Psyllid ID: psy18096

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-
Protein Sequence
MDYVLPLMETGEECQIEITARFGYGDKGEPSKSIPPGAKLYYSLTLHSVLPDFDLAELPVEKRLDFGGILASQELLDSLIKERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCLILT
Secondary Structure (PSIPRED)
cHHHHHccccccEEEEEEccccccccccccccccccccEEEEEEEccccccccccccHHHHHHHHccccHHHHHHHHHHHHHHHHHHcHHHHHHHHHccHHHHHHHHHHHHHcccccHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cccEHHHHccccEEEEEEccccccccccccccccccccEEEEEEEEEEccccccHHHccHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHcccEEEEc
Coil and Loop (DISEMBL)
mdyvlplmetgEECQIEITArfgygdkgepsksippgakLYYSLTLhsvlpdfdlaelpvekrldfggILASQELLDSLIKERINCYNNLAQAQIKLGSLEPALMSLEnvlnldpnnIKALQRKAKCLILT
Flexible Loop (DISEMBL)
MDYVLPLMETGEECQIEITARFGYGDKGEPSKSIPPGAKLYYSLTLHSVLPDFDLAELPVEKRLDFGGILASQELLDSLIKERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCLILT
Low Complexity Region (SEG)
MDYVLPLMETGEECQIEITARFGYGDKGEPSKSIPPGAKLYYSLTLHSVLPDFDLAELPVEKRLDFGGILASQELLDSLIKERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCLILT
Disordered region (IsUnstruct)
****LPLMETGEECQIEITARFGYG***********GAKLYYSLTLHSVLPDFDLAELPVEKRLDFGGILASQELLDSLIKERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCLI**
Disordered Region (DISOPRED)
MDYVLPLMETGEECQIEITARFGYGDKGEPSKSIPPGAKLYYSLTLHSVLPDFDLAELPVEKRLDFGGILASQELLDSLIKERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCLILT
Disordered Region (DISEMBL)
MDYVLPLMETGEECQIEITARFGYGDKGEPSKSIPPGAKLYYSLTLHSVLPDFDLAELPVEKRLDFGGILASQELLDSLIKERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCLILT
Disordered Region (DISPRO)
MDYVLPLMETGEECQIEITARFGYGDKGEPSKSIPPGAKLYYSLTLHSVLPDFDLAELPVEKRLDFGGILASQELLDSLIKERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCLILT
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDYVLPLMETGEECQIEITARFGYGDKGEPSKSIPPGAKLYYSLTLHSVLPDFDLAELPVEKRLDFGGILASQELLDSLIKERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCLILT
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	131	2.2.26 [Sep-21-2011]
Q3B7U9	403	Peptidyl-prolyl cis-trans	yes	N/A	0.954	0.310	0.309	2e-09
Q14318	412	Peptidyl-prolyl cis-trans	yes	N/A	0.969	0.308	0.290	7e-09
O35465	402	Peptidyl-prolyl cis-trans	yes	N/A	0.946	0.308	0.309	2e-08
Q9XSI2	457	Peptidyl-prolyl cis-trans	N/A	N/A	0.992	0.284	0.234	4e-05
Q9XSH5	457	Peptidyl-prolyl cis-trans	N/A	N/A	0.992	0.284	0.234	4e-05
Q9XT11	457	Peptidyl-prolyl cis-trans	N/A	N/A	0.992	0.284	0.234	4e-05
Q9VL78	439	FK506-binding protein 59	no	N/A	0.969	0.289	0.264	5e-05
Q95L05	457	Peptidyl-prolyl cis-trans	N/A	N/A	0.992	0.284	0.234	9e-05
Q13451	457	Peptidyl-prolyl cis-trans	no	N/A	0.992	0.284	0.234	0.0001
Q64378	456	Peptidyl-prolyl cis-trans	no	N/A	0.992	0.285	0.228	0.0001

>sp|Q3B7U9|FKBP8_RAT Peptidyl-prolyl cis-trans isomerase FKBP8 OS=Rattus norvegicus GN=Fkbp8 PE=2 SV=1

 Score = 60.8 bits (146), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 51/165 (30%), Positives = 70/165 (42%), Gaps = 40/165 (24%)

Query: 1   MDYVLPLMETGEECQIEITARFGYGDKGEPSKSIPPGAKLYYSLTLHSVLPDFDLAELPV 60
           +D  +PLM  GE   +   +++ YG +G  S  IPP A L   +TL +     DL  L  
Sbjct: 146 LDLSVPLMHVGETAMVTADSKYCYGPQGSRSPYIPPHAALCLEVTLKTAEDGPDLEMLSG 205

Query: 61  EKRL-----------------DFGGILASQELLDSLIKE--------------------R 83
           ++R+                 DF  +LA+    D  IK                     +
Sbjct: 206 QERVALANRKRECGNAHYQRADF--VLAANSY-DLAIKAITSNAKVDMTCEEEEELLQLK 262

Query: 84  INCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCL 128
           + C NNLA +Q+KL     AL S   VL   P+NIKAL RK K L
Sbjct: 263 VKCLNNLAASQLKLDHYRAALRSCSQVLEHQPDNIKALFRKGKVL 307

Constitutively inactive PPiase, which becomes active when bound to calmodulin and calcium. Seems to act as a chaperone for BCL2, targets it to the mitochondria and modulates its phosphorylation state. The BCL2/FKBP8/calmodulin/calcium complex probably interferes with the binding of BCL2 to its targets. The active form of FKBP8 may therefore play a role in the regulation of apoptosis.
Rattus norvegicus (taxid: 10116)
EC: 5EC: .EC: 2EC: .EC: 1EC: .EC: 8

>sp|Q14318|FKBP8_HUMAN Peptidyl-prolyl cis-trans isomerase FKBP8 OS=Homo sapiens GN=FKBP8 PE=1 SV=2

 Score = 59.3 bits (142), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 47/162 (29%), Positives = 69/162 (42%), Gaps = 35/162 (21%)

Query: 1   MDYVLPLMETGEECQIEITARFGYGDKGEPSKSIPPGAKLYYSLTLHSVLPDFDLAELPV 60
           +D  +PLM+ GE   +   +++ YG +G  S  IPP A L   +TL + +   DL  L  
Sbjct: 156 LDLSVPLMDVGETAMVTADSKYCYGPQGR-SPYIPPHAALCLEVTLKTAVDGPDLEMLTG 214

Query: 61  EKRLDFGG---------------------------ILASQELLDSLIKE-------RINC 86
           ++R+                                + S   +D   +E       ++ C
Sbjct: 215 QERVALANRKRECGNAHYQRADFVLAANSYDLAIKAITSSAKVDMTFEEEAQLLQLKVKC 274

Query: 87  YNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCL 128
            NNLA +Q+KL     AL S   VL   P+NIKAL RK K L
Sbjct: 275 LNNLAASQLKLDHYRAALRSCSLVLEHQPDNIKALFRKGKVL 316

Constitutively inactive PPiase, which becomes active when bound to calmodulin and calcium. Seems to act as a chaperone for BCL2, targets it to the mitochondria and modulates its phosphorylation state. The BCL2/FKBP8/calmodulin/calcium complex probably interferes with the binding of BCL2 to its targets. The active form of FKBP8 may therefore play a role in the regulation of apoptosis.

Homo sapiens (taxid: 9606)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|O35465|FKBP8_MOUSE Peptidyl-prolyl cis-trans isomerase FKBP8 OS=Mus musculus GN=Fkbp8 PE=1 SV=2

 Score = 57.8 bits (138), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 51/165 (30%), Positives = 71/165 (43%), Gaps = 41/165 (24%)

Query: 1   MDYVLPLMETGEECQIEITARFGYGDKGEPSKSIPPGAKLYYSLTLHSVLPDFDLAELPV 60
           +D  +PLM+ GE   +   +++ YG +G  S  IPP A L   +TL +     DL  L  
Sbjct: 146 LDLSVPLMDVGETAMVTADSKYCYGPQGR-SPYIPPHAALCLEVTLKTAEDGPDLEMLSG 204

Query: 61  EKRL-----------------DFGGILASQELLDSLIKE--------------------R 83
           ++R+                 DF  +LA+    D  IK                     +
Sbjct: 205 QERVALANRKRECGNAHYQRADF--VLAANSY-DLAIKAITSNTKVDMTCEEEEELLQLK 261

Query: 84  INCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCL 128
           + C NNLA +Q+KL     AL S   VL   P+NIKAL RK K L
Sbjct: 262 VKCLNNLAASQLKLDHYRAALRSCSQVLEHQPDNIKALFRKGKVL 306

Constitutively inactive PPiase, which becomes active when bound to calmodulin and calcium. Seems to act as a chaperone for BCL2, targets it to the mitochondria and modulates its phosphorylation state. The BCL2/FKBP8/calmodulin/calcium complex probably interferes with the binding of BCL2 to its targets. The active form of FKBP8 may therefore play a role in the regulation of apoptosis (By similarity). Required for normal embryonic development.

Mus musculus (taxid: 10090)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|Q9XSI2|FKBP5_SAGOE Peptidyl-prolyl cis-trans isomerase FKBP5 OS=Saguinus oedipus GN=FKBP5 PE=2 SV=2

 Score = 47.0 bits (110), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 38/162 (23%), Positives = 69/162 (42%), Gaps = 32/162 (19%)

Query: 1   MDYVLPLMETGEECQIEITARFGYGDKGEPSKSIPPGAKLYYSLTLHSVLPDFDLAELPV 60
           +D  L  M+  E+C + +  R+G+G+ G+P   I P A+L Y +TL S     +  E+  
Sbjct: 202 IDKALEKMQREEQCILHLGPRYGFGEAGKPKFGIEPNAELIYEVTLKSFEKAKESWEMDT 261

Query: 61  EKRLD------------------------FGGILASQELLDSLIKER--------INCYN 88
           +++L+                        +G I++  E+   L ++         +  + 
Sbjct: 262 KEKLEQAAIVKEEGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFL 321

Query: 89  NLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCLIL 130
           NLA   +KL     A+   +  L LD  N K L R+ +  +L
Sbjct: 322 NLAMCYLKLREYAKAVECCDKALGLDSANEKGLYRRGEAQLL 363

Interacts with functionally mature heterooligomeric progesterone receptor complexes along with HSP90 and TEBP (By similarity). Interacts with the glucocorticoid receptor and modulates its response to glucocorticoids.

Saguinus oedipus (taxid: 9490)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|Q9XSH5|FKBP5_SAIBB Peptidyl-prolyl cis-trans isomerase FKBP5 OS=Saimiri boliviensis boliviensis GN=FKBP5 PE=1 SV=1

 Score = 47.0 bits (110), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 38/162 (23%), Positives = 69/162 (42%), Gaps = 32/162 (19%)

Query: 1   MDYVLPLMETGEECQIEITARFGYGDKGEPSKSIPPGAKLYYSLTLHSVLPDFDLAELPV 60
           +D  L  M+  E+C + +  R+G+G+ G+P   I P A+L Y +TL S     +  E+  
Sbjct: 202 IDKALEKMQREEQCILHLGPRYGFGEAGKPKFGIEPNAELIYEVTLKSFEKAKESWEMDT 261

Query: 61  EKRLD------------------------FGGILASQELLDSLIKER--------INCYN 88
           +++L+                        +G I++  E+   L ++         +  + 
Sbjct: 262 KEKLEQAAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFL 321

Query: 89  NLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCLIL 130
           NLA   +KL     A+   +  L LD  N K L R+ +  +L
Sbjct: 322 NLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLL 363

Interacts with functionally mature heterooligomeric progesterone receptor complexes along with HSP90 and TEBP (By similarity). Interacts with the glucocorticoid receptor and modulates its response to glucocorticoids.

Saimiri boliviensis boliviensis (taxid: 39432)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|Q9XT11|FKBP5_AOTNA Peptidyl-prolyl cis-trans isomerase FKBP5 OS=Aotus nancymaae GN=FKBP5 PE=2 SV=2

 Score = 46.6 bits (109), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 38/162 (23%), Positives = 69/162 (42%), Gaps = 32/162 (19%)

Query: 1   MDYVLPLMETGEECQIEITARFGYGDKGEPSKSIPPGAKLYYSLTLHSVLPDFDLAELPV 60
           +D  L  M+  E+C + +  R+G+G+ G+P   I P A+L Y +TL S     +  E+  
Sbjct: 202 IDKALEKMQREEQCILHLGPRYGFGEAGKPKFGIEPNAELIYEVTLKSFEKAKESWEMDT 261

Query: 61  EKRLD------------------------FGGILASQELLDSLIKER--------INCYN 88
           +++L+                        +G I++  E+   L ++         +  + 
Sbjct: 262 KEKLEQAAIVKEKGTLYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFL 321

Query: 89  NLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCLIL 130
           NLA   +KL     A+   +  L LD  N K L R+ +  +L
Sbjct: 322 NLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLL 363

Interacts with functionally mature heterooligomeric progesterone receptor complexes along with HSP90 and TEBP (By similarity). Interacts with the glucocorticoid receptor and modulates its response to glucocorticoids.

Aotus nancymaae (taxid: 37293)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|Q9VL78|FKB59_DROME FK506-binding protein 59 OS=Drosophila melanogaster GN=FKBP59 PE=1 SV=1

 Score = 46.6 bits (109), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 41/155 (26%), Positives = 60/155 (38%), Gaps = 28/155 (18%)

Query: 1   MDYVLPLMETGEECQIEITARFGYGDKGEPSKSIPPGAKLYYSLTLHSVLPDFDLAELPV 60
           ++  L  M  GE  +I+I A++ +G KG     IPP A + Y++ L       +  +L  
Sbjct: 186 VEIALEKMNVGETSRIKIQAKYAFGAKGNEEFKIPPNATVEYTVKLVDCGKGLEEWKLSD 245

Query: 61  EKRL-------DFGGILASQELLDSLIKERINCYN---------------------NLAQ 92
           E+RL       + G     +E     IK    C N                     N+A 
Sbjct: 246 EERLAEAKVYKEKGTNYFKKENWALAIKMYTKCKNILPTTVHTNEEVKKIKVATHSNIAL 305

Query: 93  AQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKC 127
              K      A      VL LD NN+KAL R+ +C
Sbjct: 306 CHQKSNDHFEAKQECNEVLALDKNNVKALYRRGQC 340

May have a role in phototransduction; inhibits or prevents Ca(2+) induced stimulation of the trpl ion channel.

Drosophila melanogaster (taxid: 7227)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|Q95L05|FKBP5_CHLAE Peptidyl-prolyl cis-trans isomerase FKBP5 OS=Chlorocebus aethiops GN=FKBP5 PE=2 SV=1

 Score = 45.4 bits (106), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 38/162 (23%), Positives = 69/162 (42%), Gaps = 32/162 (19%)

Query: 1   MDYVLPLMETGEECQIEITARFGYGDKGEPSKSIPPGAKLYYSLTLHSVLPDFDLAELPV 60
           +D  L  M+  E+C + +  R+G+G+ G+P   I P A+L Y +TL S     +  E+  
Sbjct: 202 IDKALEKMQREEQCILYLGPRYGFGEAGKPKFGIEPNAELIYEVTLKSFEKAKESWEMDT 261

Query: 61  EKRLD------------------------FGGILASQELLDSLIKER--------INCYN 88
           +++L+                        +G I++  E+   L ++         +  + 
Sbjct: 262 KEKLEQAAIVKEKGTVYFKGGKYMRAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFL 321

Query: 89  NLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCLIL 130
           NLA   +KL     A+   +  L LD  N K L R+ +  +L
Sbjct: 322 NLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLL 363

Interacts with functionally mature heterooligomeric progesterone receptor complexes along with HSP90 and TEBP. Interacts with the glucocorticoid receptor and modulates its response to glucocorticoids.

Chlorocebus aethiops (taxid: 9534)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|Q13451|FKBP5_HUMAN Peptidyl-prolyl cis-trans isomerase FKBP5 OS=Homo sapiens GN=FKBP5 PE=1 SV=2

 Score = 45.4 bits (106), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 38/162 (23%), Positives = 69/162 (42%), Gaps = 32/162 (19%)

Query: 1   MDYVLPLMETGEECQIEITARFGYGDKGEPSKSIPPGAKLYYSLTLHSVLPDFDLAELPV 60
           +D  L  M+  E+C + +  R+G+G+ G+P   I P A+L Y +TL S     +  E+  
Sbjct: 202 IDKALEKMQREEQCILYLGPRYGFGEAGKPKFGIEPNAELIYEVTLKSFEKAKESWEMDT 261

Query: 61  EKRLD------------------------FGGILASQELLDSLIKER--------INCYN 88
           +++L+                        +G I++  E+   L ++         +  + 
Sbjct: 262 KEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFL 321

Query: 89  NLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCLIL 130
           NLA   +KL     A+   +  L LD  N K L R+ +  +L
Sbjct: 322 NLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLL 363

Interacts with functionally mature heterooligomeric progesterone receptor complexes along with HSP90 and TEBP.

Homo sapiens (taxid: 9606)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|Q64378|FKBP5_MOUSE Peptidyl-prolyl cis-trans isomerase FKBP5 OS=Mus musculus GN=Fkbp5 PE=1 SV=1

 Score = 45.1 bits (105), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 37/162 (22%), Positives = 67/162 (41%), Gaps = 32/162 (19%)

Query: 1   MDYVLPLMETGEECQIEITARFGYGDKGEPSKSIPPGAKLYYSLTLHSVLPDFDLAELPV 60
           +D  L  M+  E+C + +  R+G+G+ G+P   I P A+L Y +TL S     +  E+  
Sbjct: 202 IDKALVKMQREEQCILYLGPRYGFGEAGKPKFGIDPNAELMYEVTLKSFEKAKESWEMDT 261

Query: 61  EKRLDFGGILASQ--------ELLDSLIKER------------------------INCYN 88
           +++L    I+  +        +   ++I+ R                        +  + 
Sbjct: 262 KEKLTQAAIVKEKGTVYFKGGKYTQAVIQYRKIVSWLEMEYGLSEKESKASESFLLAAFL 321

Query: 89  NLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCLIL 130
           NLA   +KL     A+   +  L LD  N K L R+ +  +L
Sbjct: 322 NLAMCYLKLREYNKAVECCDKALGLDSANEKGLYRRGEAQLL 363

Interacts with functionally mature heterooligomeric progesterone receptor complexes along with HSP90 and TEBP.

Mus musculus (taxid: 10090)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	131
225714660	350	FK506-binding protein 8 [Lepeophtheirus	0.977	0.365	0.362	2e-15
427779287	382	Putative fk506 binding protein 8 [Rhipic	0.961	0.329	0.335	5e-14
427779569	499	Putative fk506 binding protein 8 [Rhipic	0.961	0.252	0.335	7e-14
195120067	401	GI19549 [Drosophila mojavensis] gi|19390	0.977	0.319	0.350	1e-13
170037479	387	FK506 binding protein [Culex quinquefasc	0.977	0.330	0.310	2e-13
195380083	402	GJ21121 [Drosophila virilis] gi|19414359	0.977	0.318	0.338	2e-13
195027892	401	GH21577 [Drosophila grimshawi] gi|193902	0.977	0.319	0.338	3e-13
427783123	425	Putative fk506 binding protein 8 [Rhipic	0.961	0.296	0.329	1e-12
157131940	386	fk506 binding protein [Aedes aegypti] gi	0.977	0.331	0.293	1e-12
427783125	425	Putative fk506 binding protein 8 [Rhipic	0.961	0.296	0.329	1e-12

>gi|225714660|gb|ACO13176.1| FK506-binding protein 8 [Lepeophtheirus salmonis]

 Score = 87.0 bits (214), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 62/171 (36%), Positives = 84/171 (49%), Gaps = 43/171 (25%)

Query: 1   MDYVLPLMETGEECQIEITARFGYGDKGEPSKSIPPGAKLYYSLTL-HSVLPDFDLAELP 59
           +DY+LP+M   E  ++   + F YGD+G  S  +PP A L   L L  SV+P  +L +LP
Sbjct: 82  LDYILPIMNVNEVVEVITESDFMYGDQGLDSPPVPPKATLQLKLHLIDSVVPPPNL-DLP 140

Query: 60  VEKRLDFG---------------------GILASQELLDS-------------------- 78
           +E+R+  G                     G   + ++LD                     
Sbjct: 141 LEERMALGARKKERGTFWYNRGEYQMAIFGYRKASQILDDAEIDIEVPIERHTLPLPLQL 200

Query: 79  LIKERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCLI 129
           LIKERIN  NNLAQAQ+K  S E +L +L  VL LDPNN KAL RK+K  +
Sbjct: 201 LIKERINALNNLAQAQMKNNSWESSLATLNQVLRLDPNNEKALFRKSKVFL 251

Source: Lepeophtheirus salmonis

Species: Lepeophtheirus salmonis

Genus: Lepeophtheirus

Family: Caligidae

Order: Siphonostomatoida

Class: Maxillopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|427779287|gb|JAA55095.1| Putative fk506 binding protein 8 [Rhipicephalus pulchellus]

 Score = 82.4 bits (202), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 55/164 (33%), Positives = 79/164 (48%), Gaps = 38/164 (23%)

Query: 1   MDYVLPLMETGEECQIEITARFGYGDKG-EPSKSIPPGAKLYYSLTLHSVLPDFDLAELP 59
           +D  L LME GE  +I + AR GYGD+G EP   +PP AKL++ + L    P  D ++LP
Sbjct: 121 LDITLALMEKGEIAEIVVPARLGYGDQGREP--DVPPKAKLHFYVELLDTYPAKDESDLP 178

Query: 60  VEKRLDFGGILASQ---------------------ELLDS--------------LIKERI 84
            ++RL  G     +                     + LD               L+  R+
Sbjct: 179 FQERLSIGDAKRERGNFWYSRGDYSNAAHCYRRALDFLDDMGLNLSESPADLQLLLDTRL 238

Query: 85  NCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCL 128
             YNNL   Q+K+ + + AL S++ VL + PNN+KAL RK K L
Sbjct: 239 KVYNNLTATQMKMKAYDAALKSVDFVLKVQPNNVKALYRKGKIL 282

Source: Rhipicephalus pulchellus

Species: Rhipicephalus pulchellus

Genus: Rhipicephalus

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|427779569|gb|JAA55236.1| Putative fk506 binding protein 8 [Rhipicephalus pulchellus]

 Score = 82.0 bits (201), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 55/164 (33%), Positives = 78/164 (47%), Gaps = 38/164 (23%)

Query: 1   MDYVLPLMETGEECQIEITARFGYGDKG-EPSKSIPPGAKLYYSLTLHSVLPDFDLAELP 59
           +D  L LME GE  +I + AR GYGD+G EP   +PP AKL++ + L    P  D ++LP
Sbjct: 238 LDITLALMEKGEIAEIVVPARLGYGDQGREP--DVPPKAKLHFYVELLDTYPAKDESDLP 295

Query: 60  VEKRLDFG-----------------------------------GILASQELLDSLIKERI 84
            ++RL  G                                    +  S   L  L+  R+
Sbjct: 296 FQERLSIGDAKRERGNFWYSRGDYSNAAHCYRRALDFLDDMGLNLSESPADLQLLLDTRL 355

Query: 85  NCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCL 128
             YNNL   Q+K+ + + AL S++ VL + PNN+KAL RK K L
Sbjct: 356 KVYNNLTATQMKMKAYDAALKSVDFVLKVQPNNVKALYRKGKIL 399

Source: Rhipicephalus pulchellus

Species: Rhipicephalus pulchellus

Genus: Rhipicephalus

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195120067|ref|XP_002004550.1| GI19549 [Drosophila mojavensis] gi|193909618|gb|EDW08485.1| GI19549 [Drosophila mojavensis]

 Score = 81.3 bits (199), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 62/177 (35%), Positives = 79/177 (44%), Gaps = 49/177 (27%)

Query: 1   MDYVLPLMETGEECQIEITARFGYGDKG-----EPSKSIPPGAKLYYSLTLHSV-LPDF- 53
           +D VLP+M  GE  Q+ I  RFGYG  G      P   IPP A L Y L L  V   DF 
Sbjct: 125 LDMVLPMMHVGEVAQVSIDQRFGYGTIGLKTENPPETVIPPNANLIYELELVDVKYEDFA 184

Query: 54  DLAELPV---------------EKRLDFGGILA--------------------------- 71
           DL    V                KR+++   +                            
Sbjct: 185 DLKSFDVLRKYGARKKERANYFYKRVEYNNAIHLYRRALDYLDNRDGDPDAEFGKEDMEL 244

Query: 72  SQELLDSLIKERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCL 128
           S   L SL+++R+  YNNLA AQIK+G+ + AL S+E+VL   PNN KAL RK + L
Sbjct: 245 SNSDLQSLLEDRLIVYNNLAMAQIKIGAYDAALQSVEHVLRCQPNNPKALYRKGRVL 301

Source: Drosophila mojavensis

Species: Drosophila mojavensis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170037479|ref|XP_001846585.1| FK506 binding protein [Culex quinquefasciatus] gi|167880693|gb|EDS44076.1| FK506 binding protein [Culex quinquefasciatus]

 Score = 80.5 bits (197), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 55/177 (31%), Positives = 79/177 (44%), Gaps = 49/177 (27%)

Query: 1   MDYVLPLMETGEECQIEITARFGYGDKG-----EPSKSIPPGAKLYYSLTLHSVLPDFDL 55
           +D  L LM  GE  ++ + ARF YGD+G      P +S+PP AK+ Y++ L S   + DL
Sbjct: 109 LDMTLKLMNVGERAEVIVDARFAYGDQGYKNEDHPERSVPPNAKITYTVELVSSKEEADL 168

Query: 56  AELPVEKRLDFGG--------ILASQEL-------------------------------- 75
                  R D G          +  QE                                 
Sbjct: 169 ESKTYAARKDIGNKKRLRGNFWMKRQEYNLAIQSYRRALEYLDESEGGITKPTADGEAEP 228

Query: 76  ----LDSLIKERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCL 128
               L  L+++R+  YNNLA AQ+K+G+ + AL S+++VL   P+N KAL RK K L
Sbjct: 229 TNADLQELLEDRMKVYNNLALAQLKIGANDAALKSVDHVLQCQPSNTKALFRKRKIL 285

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195380083|ref|XP_002048800.1| GJ21121 [Drosophila virilis] gi|194143597|gb|EDW59993.1| GJ21121 [Drosophila virilis]

 Score = 80.1 bits (196), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 60/177 (33%), Positives = 79/177 (44%), Gaps = 49/177 (27%)

Query: 1   MDYVLPLMETGEECQIEITARFGYGDKG-----EPSKSIPPGAKLYYSLTLHSV-LPDF- 53
           +D VLP+M  GE  Q+ +  RFGYG  G      P   +PP A L Y + L  V   DF 
Sbjct: 126 IDMVLPMMHVGEVSQVNVDQRFGYGTIGLKTENPPEIIVPPNANLVYQVELVDVKFEDFS 185

Query: 54  DLAELPV---------------EKRLDFGGILA--------------------------- 71
           DL    V                KR+++   +                            
Sbjct: 186 DLKSFDVLRKYGARKKERANYYYKRVEYNNAIHLYRRALDYLDSRDGDPDAEFGKEDLEL 245

Query: 72  SQELLDSLIKERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCL 128
           S   L SL+++R+  YNNLA AQIK+G+ + AL S+ENVL   PNN KAL RK + L
Sbjct: 246 SNSDLQSLLEDRLIVYNNLAMAQIKVGAYDAALQSVENVLRCQPNNPKALYRKGRVL 302

Source: Drosophila virilis

Species: Drosophila virilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195027892|ref|XP_001986816.1| GH21577 [Drosophila grimshawi] gi|193902816|gb|EDW01683.1| GH21577 [Drosophila grimshawi]

 Score = 80.1 bits (196), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 60/177 (33%), Positives = 80/177 (45%), Gaps = 49/177 (27%)

Query: 1   MDYVLPLMETGEECQIEITARFGYGDKG-----EPSKSIPPGAKLYYSLTLHSV-LPDF- 53
           +D VLP+M  GE  ++ +  RFGYG  G      P   IPP A+L Y L L  V   DF 
Sbjct: 125 LDMVLPMMHVGEVAEVTVDQRFGYGTAGLKTDNPPEIVIPPNAQLIYELELVDVKYEDFA 184

Query: 54  DLAELPV---------------EKRLDFGGILA--------------------------- 71
           DL    V                KR+++   +                            
Sbjct: 185 DLKSFEVLRKYGARKKERANYFYKRVEYNNAIHLYRRALDYLDHRDGDPDAEFGKEDLEL 244

Query: 72  SQELLDSLIKERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCL 128
           S   L SL+++R+  YNNLA AQIK+G+ + AL S+E+VL   PNN KAL RK + L
Sbjct: 245 SNSDLQSLLEDRLIVYNNLAMAQIKIGAYDAALQSVEHVLRCQPNNPKALYRKGRVL 301

Source: Drosophila grimshawi

Species: Drosophila grimshawi

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|427783123|gb|JAA57013.1| Putative fk506 binding protein 8 [Rhipicephalus pulchellus]

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 54/164 (32%), Positives = 78/164 (47%), Gaps = 38/164 (23%)

Query: 1   MDYVLPLMETGEECQIEITARFGYGDKG-EPSKSIPPGAKLYYSLTLHSVLPDFDLAELP 59
           +D  L LME GE  +I + AR GYGD+G EP   + P AKL++ + L    P  D ++LP
Sbjct: 164 LDITLALMEKGEIAEIVVPARLGYGDQGKEP--DVLPKAKLHFYVELLDTYPAKDESDLP 221

Query: 60  VEKRLDFGGILASQ---------------------ELLDS--------------LIKERI 84
            ++RL  G     +                     + LD               L+  R+
Sbjct: 222 FQERLSIGDAKRERGNFWYSRGDYSNAAHCYRRALDFLDDMGLNLSESPADLQLLLDTRL 281

Query: 85  NCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCL 128
             YNNL   Q+K+ + + AL S++ VL + PNN+KAL RK K L
Sbjct: 282 KVYNNLTATQMKMKAYDAALKSVDFVLKVQPNNVKALYRKGKIL 325

Source: Rhipicephalus pulchellus

Species: Rhipicephalus pulchellus

Genus: Rhipicephalus

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157131940|ref|XP_001662371.1| fk506 binding protein [Aedes aegypti] gi|108871336|gb|EAT35561.1| AAEL012272-PA [Aedes aegypti]

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 52/177 (29%), Positives = 82/177 (46%), Gaps = 49/177 (27%)

Query: 1   MDYVLPLMETGEECQIEITARFGYGDKG-----EPSKSIPPGAKLYYSLTLHSVLPDFDL 55
           +D  L LM  GE+ ++ +++RF YG++G      P +++PP  K+ Y++ L S   + DL
Sbjct: 107 LDMALKLMNVGEQAEVIVSSRFAYGEQGLKNEDHPERTVPPNEKITYTVELVSTKEETDL 166

Query: 56  --------AELPVEKRLDFGGILASQEL-------------------------------- 75
                    E+  +KRL     +  QE                                 
Sbjct: 167 ESKTYKARKEIGNKKRLRGNFWMKRQEYNLAIQSYRRALEYLDESEGGITNPTESGNMEP 226

Query: 76  ----LDSLIKERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCL 128
               L  L+++R+  YNNLA AQ+K+ + + AL S+++VL   PNN KAL RK K L
Sbjct: 227 TNAELQELLEDRMKVYNNLALAQLKIAAYDAALKSVDHVLQCQPNNAKALFRKGKIL 283

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|427783125|gb|JAA57014.1| Putative fk506 binding protein 8 [Rhipicephalus pulchellus]

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 54/164 (32%), Positives = 78/164 (47%), Gaps = 38/164 (23%)

Query: 1   MDYVLPLMETGEECQIEITARFGYGDKG-EPSKSIPPGAKLYYSLTLHSVLPDFDLAELP 59
           +D  L LME GE  +I + AR GYGD+G EP   + P AKL++ + L    P  D ++LP
Sbjct: 164 LDITLALMEKGEIAEIVVPARLGYGDQGKEP--DVLPKAKLHFYVELLDTYPAKDESDLP 221

Query: 60  VEKRLDFGGILASQ---------------------ELLDS--------------LIKERI 84
            ++RL  G     +                     + LD               L+  R+
Sbjct: 222 FQERLSIGDAKRERGNFWYSRGDYSNAAHCYRRALDFLDDMGLNLSESPADLQLLLDTRL 281

Query: 85  NCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCL 128
             YNNL   Q+K+ + + AL S++ VL + PNN+KAL RK K L
Sbjct: 282 KVYNNLTATQMKMKAYDAALKSVDFVLKVQPNNVKALYRKGKIL 325

Source: Rhipicephalus pulchellus

Species: Rhipicephalus pulchellus

Genus: Rhipicephalus

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	131
ZFIN|ZDB-GENE-050208-116	504	si:ch211-13k12.1 "si:ch211-13k	0.351	0.091	0.565	6e-11
UNIPROTKB|B7Z7Z8	278	FKBP5 "Peptidyl-prolyl cis-tra	0.534	0.251	0.3	7.1e-09
UNIPROTKB|Q9XSI2	457	FKBP5 "Peptidyl-prolyl cis-tra	0.557	0.159	0.287	1.7e-08
UNIPROTKB|Q9XT11	457	FKBP5 "Peptidyl-prolyl cis-tra	0.580	0.166	0.289	1.7e-08
UNIPROTKB|E1C4X2	449	FKBP5 "Uncharacterized protein	0.534	0.155	0.3	2.1e-08
UNIPROTKB|Q646T7	449	FKBP51 "Uncharacterized protei	0.534	0.155	0.3	2.1e-08
UNIPROTKB|Q9XSH5	457	FKBP5 "Peptidyl-prolyl cis-tra	0.534	0.153	0.3	2.1e-08
UNIPROTKB|E2RLB3	456	FKBP5 "Uncharacterized protein	0.534	0.153	0.3	2.7e-08
UNIPROTKB|F1RYY0	456	FKBP5 "Uncharacterized protein	0.534	0.153	0.3	3.4e-08
UNIPROTKB|G3MXV0	457	FKBP5 "Uncharacterized protein	0.534	0.153	0.3	3.4e-08

ZFIN|ZDB-GENE-050208-116 si:ch211-13k12.1 "si:ch211-13k12.1" [Danio rerio (taxid:7955)]

 Score = 128 (50.1 bits), Expect = 6.0e-11, Sum P(2) = 6.0e-11
 Identities = 26/46 (56%), Positives = 33/46 (71%)

Query:    83 RINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCL 128
             R+ C NNLA AQ+KLG  + AL + ++VL LDP N+KAL RK K L
Sbjct:   360 RVKCLNNLAAAQLKLGHFDEALHTSQDVLFLDPQNVKALFRKGKLL 405

GO:0006457 "protein folding" evidence=IEA

GO:0018208 "peptidyl-proline modification" evidence=IBA

GO:0030176 "integral to endoplasmic reticulum membrane" evidence=IBA

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=IBA

GO:0000413 "protein peptidyl-prolyl isomerization" evidence=IBA

GO:0005528 "FK506 binding" evidence=IBA

GO:0005740 "mitochondrial envelope" evidence=IBA

UNIPROTKB|B7Z7Z8 FKBP5 "Peptidyl-prolyl cis-trans isomerase FKBP5" [Homo sapiens (taxid:9606)]

 Score = 100 (40.3 bits), Expect = 7.1e-09, Sum P(2) = 7.1e-09
 Identities = 21/70 (30%), Positives = 39/70 (55%)

Query:     1 MDYVLPLMETGEECQIEITARFGYGDKGEPSKSIPPGAKLYYSLTLHSVLPDFDLAELPV 60
             +D  L  M+  E+C + +  R+G+G+ G+P   I P A+L Y +TL S     +  E+  
Sbjct:    23 IDKALEKMQREEQCILYLGPRYGFGEAGKPKFGIEPNAELIYEVTLKSFEKAKESWEMDT 82

Query:    61 EKRLDFGGIL 70
             +++L+   I+
Sbjct:    83 KEKLEQAAIV 92

GO:0006457 "protein folding" evidence=IEA

UNIPROTKB|Q9XSI2 FKBP5 "Peptidyl-prolyl cis-trans isomerase FKBP5" [Saguinus oedipus (taxid:9490)]

 Score = 103 (41.3 bits), Expect = 1.7e-08, Sum P(2) = 1.7e-08
 Identities = 21/73 (28%), Positives = 40/73 (54%)

Query:     1 MDYVLPLMETGEECQIEITARFGYGDKGEPSKSIPPGAKLYYSLTLHSVLPDFDLAELPV 60
             +D  L  M+  E+C + +  R+G+G+ G+P   I P A+L Y +TL S     +  E+  
Sbjct:   202 IDKALEKMQREEQCILHLGPRYGFGEAGKPKFGIEPNAELIYEVTLKSFEKAKESWEMDT 261

Query:    61 EKRLDFGGILASQ 73
             +++L+   I+  +
Sbjct:   262 KEKLEQAAIVKEE 274

GO:0000413 "protein peptidyl-prolyl isomerization" evidence=ISS

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=ISS

GO:0061077 "chaperone-mediated protein folding" evidence=ISS

UNIPROTKB|Q9XT11 FKBP5 "Peptidyl-prolyl cis-trans isomerase FKBP5" [Aotus nancymaae (taxid:37293)]

 Score = 103 (41.3 bits), Expect = 1.7e-08, Sum P(2) = 1.7e-08
 Identities = 22/76 (28%), Positives = 41/76 (53%)

Query:     1 MDYVLPLMETGEECQIEITARFGYGDKGEPSKSIPPGAKLYYSLTLHSVLPDFDLAELPV 60
             +D  L  M+  E+C + +  R+G+G+ G+P   I P A+L Y +TL S     +  E+  
Sbjct:   202 IDKALEKMQREEQCILHLGPRYGFGEAGKPKFGIEPNAELIYEVTLKSFEKAKESWEMDT 261

Query:    61 EKRLDFGGILASQELL 76
             +++L+   I+  +  L
Sbjct:   262 KEKLEQAAIVKEKGTL 277

GO:0000413 "protein peptidyl-prolyl isomerization" evidence=ISS

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=ISS

GO:0061077 "chaperone-mediated protein folding" evidence=ISS

UNIPROTKB|E1C4X2 FKBP5 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 99 (39.9 bits), Expect = 2.1e-08, Sum P(2) = 2.1e-08
 Identities = 21/70 (30%), Positives = 38/70 (54%)

Query:     1 MDYVLPLMETGEECQIEITARFGYGDKGEPSKSIPPGAKLYYSLTLHSVLPDFDLAELPV 60
             +D  L  M+ GE C + +  R+G+G+ G+P   I   A+L Y +TL S     +  E+  
Sbjct:   202 IDKALEKMQRGEHCILYLGPRYGFGEAGKPKYGIQANAELVYEVTLKSFEKAKESWEMDT 261

Query:    61 EKRLDFGGIL 70
             +++L+   I+
Sbjct:   262 KEKLEQAAIV 271

GO:0006457 "protein folding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0031072 "heat shock protein binding" evidence=IEA

UNIPROTKB|Q646T7 FKBP51 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 99 (39.9 bits), Expect = 2.1e-08, Sum P(2) = 2.1e-08
 Identities = 21/70 (30%), Positives = 38/70 (54%)

Query:     1 MDYVLPLMETGEECQIEITARFGYGDKGEPSKSIPPGAKLYYSLTLHSVLPDFDLAELPV 60
             +D  L  M+ GE C + +  R+G+G+ G+P   I   A+L Y +TL S     +  E+  
Sbjct:   202 IDKALEKMQRGEHCILYLGPRYGFGEAGKPKYGIQANAELVYEVTLKSFEKAKESWEMDT 261

Query:    61 EKRLDFGGIL 70
             +++L+   I+
Sbjct:   262 KEKLEQAAIV 271

GO:0006457 "protein folding" evidence=IEA

GO:0018208 "peptidyl-proline modification" evidence=IBA

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=IBA

GO:0005528 "FK506 binding" evidence=IBA

GO:0016020 "membrane" evidence=IBA

GO:0000413 "protein peptidyl-prolyl isomerization" evidence=IBA

UNIPROTKB|Q9XSH5 FKBP5 "Peptidyl-prolyl cis-trans isomerase FKBP5" [Saimiri boliviensis boliviensis (taxid:39432)]

 Score = 102 (41.0 bits), Expect = 2.1e-08, Sum P(2) = 2.1e-08
 Identities = 21/70 (30%), Positives = 39/70 (55%)

Query:     1 MDYVLPLMETGEECQIEITARFGYGDKGEPSKSIPPGAKLYYSLTLHSVLPDFDLAELPV 60
             +D  L  M+  E+C + +  R+G+G+ G+P   I P A+L Y +TL S     +  E+  
Sbjct:   202 IDKALEKMQREEQCILHLGPRYGFGEAGKPKFGIEPNAELIYEVTLKSFEKAKESWEMDT 261

Query:    61 EKRLDFGGIL 70
             +++L+   I+
Sbjct:   262 KEKLEQAAIV 271

GO:0000413 "protein peptidyl-prolyl isomerization" evidence=ISS

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=ISS

GO:0061077 "chaperone-mediated protein folding" evidence=ISS

UNIPROTKB|E2RLB3 FKBP5 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 100 (40.3 bits), Expect = 2.7e-08, Sum P(2) = 2.7e-08
 Identities = 21/70 (30%), Positives = 39/70 (55%)

Query:     1 MDYVLPLMETGEECQIEITARFGYGDKGEPSKSIPPGAKLYYSLTLHSVLPDFDLAELPV 60
             +D  L  M+  E+C + +  R+G+G+ G+P   I P A+L Y +TL S     +  E+  
Sbjct:   202 IDKALEKMQREEQCILYLGPRYGFGEAGKPKFGIEPNAELIYEVTLKSFEKAKESWEMDT 261

Query:    61 EKRLDFGGIL 70
             +++L+   I+
Sbjct:   262 KEKLEQAAIV 271

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0006457 "protein folding" evidence=IEA

UNIPROTKB|F1RYY0 FKBP5 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 100 (40.3 bits), Expect = 3.4e-08, Sum P(2) = 3.4e-08
 Identities = 21/70 (30%), Positives = 39/70 (55%)

Query:     1 MDYVLPLMETGEECQIEITARFGYGDKGEPSKSIPPGAKLYYSLTLHSVLPDFDLAELPV 60
             +D  L  M+  E+C + +  R+G+G+ G+P   I P A+L Y +TL S     +  E+  
Sbjct:   202 IDKALEKMQREEQCILYLGPRYGFGEAGKPKFGIEPNAELIYEVTLKSFEKAKESWEMDT 261

Query:    61 EKRLDFGGIL 70
             +++L+   I+
Sbjct:   262 KEKLEQAAIV 271

GO:0006457 "protein folding" evidence=IEA

UNIPROTKB|G3MXV0 FKBP5 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 100 (40.3 bits), Expect = 3.4e-08, Sum P(2) = 3.4e-08
 Identities = 21/70 (30%), Positives = 39/70 (55%)

Query:     1 MDYVLPLMETGEECQIEITARFGYGDKGEPSKSIPPGAKLYYSLTLHSVLPDFDLAELPV 60
             +D  L  M+  E+C + +  R+G+G+ G+P   I P A+L Y +TL S     +  E+  
Sbjct:   202 IDKALEKMQREEQCILYLGPRYGFGEAGKPKFGIEPNAELIYEVTLKSFEKAKESWEMDT 261

Query:    61 EKRLDFGGIL 70
             +++L+   I+
Sbjct:   262 KEKLEQAAIV 271

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0006457 "protein folding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	131
pfam00254	94	pfam00254, FKBP_C, FKBP-type peptidyl-prolyl cis-t	8e-07
pfam13414	69	pfam13414, TPR_11, TPR repeat	0.002
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	0.004

>gnl|CDD|215821 pfam00254, FKBP_C, FKBP-type peptidyl-prolyl cis-trans isomerase

 Score = 43.8 bits (104), Expect = 8e-07
 Identities = 15/47 (31%), Positives = 23/47 (48%)

Query: 1  MDYVLPLMETGEECQIEITARFGYGDKGEPSKSIPPGAKLYYSLTLH 47
           D  L  M+ GE+ ++ I     YG++G     IPP A L + + L 
Sbjct: 48 WDEGLLGMKVGEKRKLTIPPELAYGEEGLAGGVIPPNATLVFEVELL 94

Length = 94

>gnl|CDD|222112 pfam13414, TPR_11, TPR repeat

 Score = 34.2 bits (79), Expect = 0.002
 Identities = 15/48 (31%), Positives = 22/48 (45%)

Query: 82  ERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCLI 129
           +      NL  A  KLG  + A+ + E  L LDP+N +A    A   +
Sbjct: 1   DNAEALKNLGNALFKLGDYDEAIEAYEKALELDPDNAEAYYNLALAYL 48

Length = 69

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 33.9 bits (78), Expect = 0.004
 Identities = 19/43 (44%), Positives = 20/43 (46%)

Query: 86  CYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCL 128
            Y NLA A  KLG  E AL   E  L LDP+N KA        
Sbjct: 36  AYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAY 78

Length = 100

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	131
KOG0543|consensus	397		100.0
KOG0545|consensus	329		99.81
KOG0553|consensus	304		99.59
KOG0547|consensus	606		99.57
KOG0544|consensus	108		99.46
KOG0548|consensus	539		99.45
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.39
KOG4234|consensus	271		99.38
KOG0549|consensus	188		99.33
KOG0551|consensus	390		99.27
KOG4648|consensus	536		99.16
COG0545	205	FkpA FKBP-type peptidyl-prolyl cis-trans isomerase	99.16
KOG0548|consensus	539		99.11
KOG0550|consensus	486		99.1
KOG4642|consensus	284		99.09
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	99.09
KOG0376|consensus	476		99.08
PF00254	94	FKBP_C: FKBP-type peptidyl-prolyl cis-trans isomer	99.05
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	99.03
TIGR03516	177	ppisom_GldI peptidyl-prolyl isomerase, gliding mot	99.01
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	99.0
PRK15359	144	type III secretion system chaperone protein SscB;	98.99
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	98.97
PRK15359	144	type III secretion system chaperone protein SscB;	98.92
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	98.91
KOG0552|consensus	226		98.89
PRK11570	206	peptidyl-prolyl cis-trans isomerase; Provisional	98.83
PRK11189	296	lipoprotein NlpI; Provisional	98.82
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	98.73
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	98.72
PF13371	73	TPR_9: Tetratricopeptide repeat	98.72
PF13428	44	TPR_14: Tetratricopeptide repeat	98.71
TIGR02552	135	LcrH_SycD type III secretion low calcium response	98.68
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	98.68
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	98.63
PRK10902	269	FKBP-type peptidyl-prolyl cis-trans isomerase; Pro	98.59
KOG0553|consensus	304		98.47
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	98.46
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	98.41
KOG1308|consensus	377		98.4
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	98.36
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	98.33
PLN02789	320	farnesyltranstransferase	98.33
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	98.33
KOG0543|consensus	397		98.33
PRK10370	198	formate-dependent nitrite reductase complex subuni	98.3
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	98.29
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	98.29
PRK12370	553	invasion protein regulator; Provisional	98.28
PRK10370	198	formate-dependent nitrite reductase complex subuni	98.28
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	98.28
KOG0550|consensus	486		98.25
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	98.24
TIGR02552	135	LcrH_SycD type III secretion low calcium response	98.18
PRK11189	296	lipoprotein NlpI; Provisional	98.18
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	98.15
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	98.15
PLN02789	320	farnesyltranstransferase	98.14
KOG4234|consensus	271		98.13
KOG0624|consensus	504		98.11
KOG4626|consensus	966		98.11
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	98.09
PRK15331	165	chaperone protein SicA; Provisional	98.09
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	98.09
KOG4626|consensus	966		98.08
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	98.08
KOG1125|consensus	579		98.07
KOG4555|consensus	175		98.06
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	98.04
PRK12370	553	invasion protein regulator; Provisional	98.03
PF13512	142	TPR_18: Tetratricopeptide repeat	98.0
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	97.98
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	97.95
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	97.95
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	97.95
KOG1310|consensus	758		97.95
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	97.92
KOG0547|consensus	606		97.91
PF13371	73	TPR_9: Tetratricopeptide repeat	97.9
KOG1126|consensus	638		97.89
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	97.89
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	97.88
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	97.87
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	97.87
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	97.85
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	97.84
PF13431	34	TPR_17: Tetratricopeptide repeat	97.84
KOG1155|consensus	559		97.81
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	97.8
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	97.79
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	97.77
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	97.74
PF13431	34	TPR_17: Tetratricopeptide repeat	97.73
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	97.7
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	97.66
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	97.65
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	97.65
COG4783	484	Putative Zn-dependent protease, contains TPR repea	97.63
KOG2076|consensus	895		97.63
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	97.62
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	97.59
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	97.54
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	97.54
KOG1128|consensus	777		97.54
KOG1155|consensus	559		97.53
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	97.53
KOG0624|consensus	504		97.51
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	97.49
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	97.48
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	97.47
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	97.47
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	97.46
PRK10803	263	tol-pal system protein YbgF; Provisional	97.43
PRK11788	389	tetratricopeptide repeat protein; Provisional	97.42
KOG1125|consensus	579		97.39
KOG1173|consensus	611		97.39
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	97.37
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	97.35
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	97.34
KOG1173|consensus	611		97.33
PF03704	146	BTAD: Bacterial transcriptional activator domain;	97.31
PRK11788	389	tetratricopeptide repeat protein; Provisional	97.26
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	97.2
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	97.19
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	97.14
KOG1126|consensus	638		97.11
KOG3364|consensus	149		97.03
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	97.0
KOG0546|consensus	372		96.99
PRK14720	906	transcript cleavage factor/unknown domain fusion p	96.98
KOG4162|consensus	799		96.96
KOG4648|consensus	536		96.91
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	96.82
PRK15095	156	FKBP-type peptidyl-prolyl cis-trans isomerase; Pro	96.82
PRK15331	165	chaperone protein SicA; Provisional	96.81
PF12968	144	DUF3856: Domain of Unknown Function (DUF3856); Int	96.78
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	96.67
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	96.66
PRK11906	458	transcriptional regulator; Provisional	96.63
KOG1840|consensus	508		96.61
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	96.6
PF12688	120	TPR_5: Tetratrico peptide repeat	96.56
KOG0376|consensus	476		96.53
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	96.45
PRK14574	822	hmsH outer membrane protein; Provisional	96.41
KOG0545|consensus	329		96.34
KOG3785|consensus	557		96.33
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	96.33
COG4105	254	ComL DNA uptake lipoprotein [General function pred	96.32
KOG2002|consensus	1018		96.29
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	96.27
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	96.25
PRK11906	458	transcriptional regulator; Provisional	96.21
PF15015	569	NYD-SP12_N: Spermatogenesis-associated, N-terminal	96.21
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	96.15
PRK10803	263	tol-pal system protein YbgF; Provisional	96.12
KOG2002|consensus	1018		96.08
KOG0551|consensus	390		96.06
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	95.96
KOG3060|consensus	289		95.94
KOG2076|consensus	895		95.94
KOG1129|consensus	478		95.88
COG4783	484	Putative Zn-dependent protease, contains TPR repea	95.8
PF12862	94	Apc5: Anaphase-promoting complex subunit 5	95.76
KOG1128|consensus	777		95.73
KOG1174|consensus	564		95.72
KOG1840|consensus	508		95.49
KOG3060|consensus	289		95.48
KOG4814|consensus	872		95.41
PRK10941	269	hypothetical protein; Provisional	95.41
KOG2003|consensus	840		95.34
KOG1129|consensus	478		95.32
COG1047	174	SlpA FKBP-type peptidyl-prolyl cis-trans isomerase	95.32
PRK10737	196	FKBP-type peptidyl-prolyl cis-trans isomerase; Pro	95.27
KOG1127|consensus	1238		95.13
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	95.11
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	95.1
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	95.08
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	95.07
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	95.04
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	95.03
KOG3081|consensus	299		94.98
KOG4555|consensus	175		94.97
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	94.84
PF10516	38	SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat	94.84
KOG0549|consensus	188		94.78
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	94.71
KOG1156|consensus	700		94.5
PF07721	26	TPR_4: Tetratricopeptide repeat; InterPro: IPR0117	94.4
KOG4151|consensus	748		94.35
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	94.28
TIGR03504	44	FimV_Cterm FimV C-terminal domain. This protein is	94.26
KOG2796|consensus	366		94.25
KOG1156|consensus	700		94.22
PF12688	120	TPR_5: Tetratrico peptide repeat	94.09
KOG2471|consensus	696		94.06
PF10255	404	Paf67: RNA polymerase I-associated factor PAF67; I	93.95
PF07720	36	TPR_3: Tetratricopeptide repeat; InterPro: IPR0117	93.87
PRK14574	822	hmsH outer membrane protein; Provisional	93.79
COG3947	361	Response regulator containing CheY-like receiver a	93.51
KOG4340|consensus	459		93.51
KOG4162|consensus	799		93.49
KOG2003|consensus	840		93.38
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	93.36
PRK10941	269	hypothetical protein; Provisional	93.15
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	93.15
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	93.01
KOG3824|consensus	472		92.81
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	92.37
KOG1586|consensus	288		92.36
PF03704	146	BTAD: Bacterial transcriptional activator domain;	92.1
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	92.04
KOG1127|consensus	1238		91.93
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	91.79
TIGR00115	408	tig trigger factor. Trigger factor is a ribosome-a	91.66
COG0457	291	NrfG FOG: TPR repeat [General function prediction	91.55
PF14561	90	TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S	91.34
PF14863	141	Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB	91.31
KOG3785|consensus	557		91.01
PRK14720	906	transcript cleavage factor/unknown domain fusion p	90.65
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	90.18
COG4976	287	Predicted methyltransferase (contains TPR repeat)	90.05
KOG4642|consensus	284		89.86
PF10579	80	Rapsyn_N: Rapsyn N-terminal myristoylation and lin	89.44
KOG4340|consensus	459		89.42
COG2912	269	Uncharacterized conserved protein [Function unknow	89.34
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	88.85
PF12968	144	DUF3856: Domain of Unknown Function (DUF3856); Int	88.72
cd02682	75	MIT_AAA_Arch MIT: domain contained within Microtub	88.33
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	87.69
PF00244	236	14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14	87.3
PRK01490	435	tig trigger factor; Provisional	87.03
KOG2796|consensus	366		86.96
KOG1130|consensus	639		86.3
PF01535	31	PPR: PPR repeat; InterPro: IPR002885 This entry re	86.3
KOG3824|consensus	472		86.09
PF13512	142	TPR_18: Tetratricopeptide repeat	85.37
KOG1130|consensus	639		85.09
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	84.69
PF12854	34	PPR_1: PPR repeat	84.5
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	84.46
KOG1174|consensus	564		84.29
COG3629	280	DnrI DNA-binding transcriptional activator of the	84.03
smart00386	33	HAT HAT (Half-A-TPR) repeats. Present in several R	83.9
COG0457	291	NrfG FOG: TPR repeat [General function prediction	83.5
PF01239	31	PPTA: Protein prenyltransferase alpha subunit repe	83.21
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	82.41
KOG2376|consensus	652		81.89
PF04212	69	MIT: MIT (microtubule interacting and transport) d	81.84
cd02679	79	MIT_spastin MIT: domain contained within Microtubu	81.52
KOG2610|consensus	491		81.4
KOG2376|consensus	652		80.6
KOG1308|consensus	377		80.37

>KOG0543|consensus

Probab=100.00  E-value=2.7e-36  Score=220.91  Aligned_cols=130  Identities=31%  Similarity=0.462  Sum_probs=117.5

Q ss_pred             CcchhcccCCCcEEEEEEcCCCCCCCCCCCCCCCCCCceEEEEEeecccc-CCccCcCcchhhhHHHH------------
Q psy18096          1 MDYVLPLMETGEECQIEITARFGYGDKGEPSKSIPPGAKLYYSLTLHSVL-PDFDLAELPVEKRLDFG------------   67 (131)
Q Consensus         1 ld~~l~~M~~gE~~~v~i~~~~ayG~~G~~~~~ip~~~~~~~~v~l~~~~-~~~~~~~~~~~e~~~~~------------   67 (131)
                      ||.||++|++||++.|+|+|+|+||+.|..++.|||++++.|+|+|++|. +....|.+...+++..+            
T Consensus       141 le~al~~M~~GE~a~v~i~~~YayG~~~~~~p~IPPnA~l~yEVeL~~f~~~~~~s~~~~~~e~l~~A~~~ke~Gn~~fK  220 (397)
T KOG0543|consen  141 LEIALRMMKVGEVALVTIDPKYAYGEEGGEPPLIPPNATLLYEVELLDFELKEDESWKMFAEERLEAADRKKERGNVLFK  220 (397)
T ss_pred             HHHHHHhcCccceEEEEeCcccccCCCCCCCCCCCCCceEEEEEEEEeeecCcccccccchHHHHHHHHHHHHhhhHHHh
Confidence            58899999999999999999999997777789999999999999999999 77789999888777655            


Q ss_pred             ----------HHHHHHHHHH----------HhhhhhHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHh
Q psy18096         68 ----------GILASQELLD----------SLIKERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKC  127 (131)
Q Consensus        68 ----------y~~Ai~~~~~----------~~~~~~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~~~ka~~rrg~a  127 (131)
                                |++|+++++.          ........+++|+|+||+|+++|.+|+..|++||++||+|+|||||||+|
T Consensus       221 ~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A  300 (397)
T KOG0543|consen  221 EGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQA  300 (397)
T ss_pred             hchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHH
Confidence                      6666666664          45677889999999999999999999999999999999999999999999


Q ss_pred             hhc
Q psy18096        128 LIL  130 (131)
Q Consensus       128 ~~~  130 (131)
                      ++.
T Consensus       301 ~l~  303 (397)
T KOG0543|consen  301 LLA  303 (397)
T ss_pred             HHh
Confidence            975

>KOG0545|consensus

Probab=99.81  E-value=2e-20  Score=130.51  Aligned_cols=129  Identities=20%  Similarity=0.159  Sum_probs=101.2

Q ss_pred             cchhcccCCCcEEEEEEcCC----CC------------------------------CCCCCCCC--CCCCCCceEEEEEe
Q psy18096          2 DYVLPLMETGEECQIEITAR----FG------------------------------YGDKGEPS--KSIPPGAKLYYSLT   45 (131)
Q Consensus         2 d~~l~~M~~gE~~~v~i~~~----~a------------------------------yG~~G~~~--~~ip~~~~~~~~v~   45 (131)
                      |.+|.+|.++|.++|+++..    |-                              |...|..+  ......+++.|.++
T Consensus        73 E~il~tM~v~EvaqF~~d~~~~vqYPfvsksLRdia~GK~p~e~~~H~Cg~a~m~~~~glGyedLDeL~knPqpL~Fvie  152 (329)
T KOG0545|consen   73 EIILTTMRVHEVAQFWCDTIHTVQYPFVSKSLRDIAQGKDPTEWHRHCCGLANMFAYHGLGYEDLDELQKNPQPLVFVIE  152 (329)
T ss_pred             HHHHHHHhhhhHHHhhhhhhheeechhHHHHHHHHhcCCCcchhhhhhhhhHHHHHhcCCChhhHHHHhhCCCceEeehh
Confidence            57899999999999999853    21                              22222111  11245578999999


Q ss_pred             eccccCCc----cCcCcchhhhHHHH---------------HHHHHHHH-------HH-------------HhhhhhHHH
Q psy18096         46 LHSVLPDF----DLAELPVEKRLDFG---------------GILASQEL-------LD-------------SLIKERINC   86 (131)
Q Consensus        46 l~~~~~~~----~~~~~~~~e~~~~~---------------y~~Ai~~~-------~~-------------~~~~~~~~~   86 (131)
                      |..+....    +.|.|+.++|+...               |++|+..|       +.             +++....++
T Consensus       153 llqVe~P~qYq~e~WqlsddeKmkav~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpL  232 (329)
T KOG0545|consen  153 LLQVEAPSQYQRETWQLSDDEKMKAVPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPL  232 (329)
T ss_pred             hhhccCchhhccccccCCchHhhhhhHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHH
Confidence            99987543    68999999886432               44444444       44             788899999


Q ss_pred             HHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHhhhc
Q psy18096         87 YNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCLIL  130 (131)
Q Consensus        87 ~~N~a~~~~kl~~~~~a~~~~~~al~~dp~~~ka~~rrg~a~~~  130 (131)
                      +.|.|+|+++.++|.++++.|+.+|..+|.|+|||||||+|+++
T Consensus       233 llNy~QC~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa  276 (329)
T KOG0545|consen  233 LLNYCQCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAA  276 (329)
T ss_pred             HHhHHHHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999874

>KOG0553|consensus

Probab=99.59  E-value=4e-15  Score=106.32  Aligned_cols=63  Identities=29%  Similarity=0.268  Sum_probs=61.5

Q ss_pred             HHHHHHHHHH--HhhhhhHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHhhhc
Q psy18096         68 GILASQELLD--SLIKERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCLIL  130 (131)
Q Consensus        68 y~~Ai~~~~~--~~~~~~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~~~ka~~rrg~a~~~  130 (131)
                      |.+||..|+.  +++|.++.+|+|||++|++||+|+.|++||..+|.+||.+.|+|-|.|.|+..
T Consensus        97 Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~  161 (304)
T KOG0553|consen   97 YQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLA  161 (304)
T ss_pred             HHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHc
Confidence            9999999999  99999999999999999999999999999999999999999999999999864

>KOG0547|consensus

Probab=99.57  E-value=5.2e-15  Score=111.56  Aligned_cols=63  Identities=25%  Similarity=0.242  Sum_probs=60.2

Q ss_pred             HHHHHHHHHH--HhhhhhHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHhhhc
Q psy18096         68 GILASQELLD--SLIKERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCLIL  130 (131)
Q Consensus        68 y~~Ai~~~~~--~~~~~~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~~~ka~~rrg~a~~~  130 (131)
                      |.+||++|+.  ++.|..+..|.|||+||..+|+|++.+++|+++|+++|+++|||+||+.|+-.
T Consensus       131 Y~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA~A~E~  195 (606)
T KOG0547|consen  131 YDEAIKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLRRASAHEQ  195 (606)
T ss_pred             HHHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHh
Confidence            9999999999  88888899999999999999999999999999999999999999999999743

>KOG0544|consensus

Probab=99.46  E-value=9.5e-14  Score=83.14  Aligned_cols=47  Identities=32%  Similarity=0.642  Sum_probs=44.4

Q ss_pred             cchhcccCCCcEEEEEEcCCCCCCCCCCCCCCCCCCceEEEEEeeccc
Q psy18096          2 DYVLPLMETGEECQIEITARFGYGDKGEPSKSIPPGAKLYYSLTLHSV   49 (131)
Q Consensus         2 d~~l~~M~~gE~~~v~i~~~~ayG~~G~~~~~ip~~~~~~~~v~l~~~   49 (131)
                      |.++.+|++||++.++|.|.||||..| ++..|||++++.|++||.++
T Consensus        61 degv~qmsvGekakLti~pd~aYG~~G-~p~~IppNatL~FdVEll~v  107 (108)
T KOG0544|consen   61 DEGVAQMSVGEKAKLTISPDYAYGPRG-HPGGIPPNATLVFDVELLKV  107 (108)
T ss_pred             hhcchhccccccceeeeccccccCCCC-CCCccCCCcEEEEEEEEEec
Confidence            688999999999999999999999999 56999999999999999876

>KOG0548|consensus

Probab=99.45  E-value=2.6e-13  Score=103.06  Aligned_cols=63  Identities=32%  Similarity=0.325  Sum_probs=60.6

Q ss_pred             HHHHHHHHHH--HhhhhhHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHhhhc
Q psy18096         68 GILASQELLD--SLIKERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCLIL  130 (131)
Q Consensus        68 y~~Ai~~~~~--~~~~~~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~~~ka~~rrg~a~~~  130 (131)
                      |..||+.|++  ..+|....+|+|||+||++++++..|++||+.+|++||++.|+|+|+|.|+..
T Consensus       374 y~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~  438 (539)
T KOG0548|consen  374 YPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRA  438 (539)
T ss_pred             HHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHH
Confidence            9999999999  77899999999999999999999999999999999999999999999999864

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.39  E-value=2.2e-12  Score=102.07  Aligned_cols=97  Identities=25%  Similarity=0.233  Sum_probs=78.7

Q ss_pred             CCCCCCceEEEEEeeccccCCccCcCcchhhhHHH-------H--------HHHHHHHHHH--HhhhhhHHHHHHHHHHH
Q psy18096         32 KSIPPGAKLYYSLTLHSVLPDFDLAELPVEKRLDF-------G--------GILASQELLD--SLIKERINCYNNLAQAQ   94 (131)
Q Consensus        32 ~~ip~~~~~~~~v~l~~~~~~~~~~~~~~~e~~~~-------~--------y~~Ai~~~~~--~~~~~~~~~~~N~a~~~   94 (131)
                      ..+|++..+....++..++. ...|.++.+++...       |        |.+||..|++  ++.|. ..+|.|+|.||
T Consensus        93 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~a~~~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~-~~~~~n~a~~~  170 (615)
T TIGR00990        93 STAPKNAPVEPADELPEIDE-SSVANLSEEERKKYAAKLKEKGNKAYRNKDFNKAIKLYSKAIECKPD-PVYYSNRAACH  170 (615)
T ss_pred             CCCCCCCCCCccccccccch-hhcccCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-hHHHHHHHHHH
Confidence            34566666666666665543 44678887765543       2        9999999999  66664 67899999999


Q ss_pred             HHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHhhhc
Q psy18096         95 IKLGSLEPALMSLENVLNLDPNNIKALQRKAKCLIL  130 (131)
Q Consensus        95 ~kl~~~~~a~~~~~~al~~dp~~~ka~~rrg~a~~~  130 (131)
                      +++|+|++|+.+|+++|+++|++.++|+|+|.++..
T Consensus       171 ~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~  206 (615)
T TIGR00990       171 NALGDWEKVVEDTTAALELDPDYSKALNRRANAYDG  206 (615)
T ss_pred             HHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999864

>KOG4234|consensus

Probab=99.38  E-value=8.6e-13  Score=90.22  Aligned_cols=63  Identities=30%  Similarity=0.322  Sum_probs=54.7

Q ss_pred             HHHHHHHHHH-------HhhhhhHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHhhhc
Q psy18096         68 GILASQELLD-------SLIKERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCLIL  130 (131)
Q Consensus        68 y~~Ai~~~~~-------~~~~~~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~~~ka~~rrg~a~~~  130 (131)
                      |.+|..-|..       -.......+|.|||+|.+|++.|+.||.+|.++|+++|.+.||+-||+.+|-.
T Consensus       111 yeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek  180 (271)
T KOG4234|consen  111 YEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEK  180 (271)
T ss_pred             HHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHh
Confidence            6666665555       33467889999999999999999999999999999999999999999999853

>KOG0549|consensus

Probab=99.33  E-value=1.6e-12  Score=86.90  Aligned_cols=52  Identities=33%  Similarity=0.510  Sum_probs=48.0

Q ss_pred             CcchhcccCCCcEEEEEEcCCCCCCCCCCCCCCCCCCceEEEEEeeccccCCc
Q psy18096          1 MDYVLPLMETGEECQIEITARFGYGDKGEPSKSIPPGAKLYYSLTLHSVLPDF   53 (131)
Q Consensus         1 ld~~l~~M~~gE~~~v~i~~~~ayG~~G~~~~~ip~~~~~~~~v~l~~~~~~~   53 (131)
                      +|++|..|++||+..++|+|+++||++|.|+. ||+++.+.|+++|..+.+.+
T Consensus       128 ~Dqgl~gMCvGEkRkl~IPp~LgYG~~G~~~~-IP~~A~LiFdiELv~i~~~~  179 (188)
T KOG0549|consen  128 WDQGLLGMCVGEKRKLIIPPHLGYGERGAPPK-IPGDAVLIFDIELVKIERGP  179 (188)
T ss_pred             HhHHhhhhCcccceEEecCccccCccCCCCCC-CCCCeeEEEEEEEEEeecCC
Confidence            58999999999999999999999999998644 99999999999999998754

>KOG0551|consensus

Probab=99.27  E-value=7.5e-12  Score=90.91  Aligned_cols=63  Identities=33%  Similarity=0.388  Sum_probs=58.3

Q ss_pred             HHHHHHHHHHHh------hhhhHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHhhhc
Q psy18096         68 GILASQELLDSL------IKERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCLIL  130 (131)
Q Consensus        68 y~~Ai~~~~~~~------~~~~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~~~ka~~rrg~a~~~  130 (131)
                      |+.|+..|++.+      ...++.+|+|||+|++-+|+|-.||.||.+|+.++|.+.||+||-++|++.
T Consensus        97 yk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc~~e  165 (390)
T KOG0551|consen   97 YKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAKCLLE  165 (390)
T ss_pred             HHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhHHHHH
Confidence            999999999922      357889999999999999999999999999999999999999999999874

>KOG4648|consensus

Probab=99.16  E-value=2.7e-11  Score=88.89  Aligned_cols=63  Identities=21%  Similarity=0.035  Sum_probs=60.4

Q ss_pred             HHHHHHHHHH--HhhhhhHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHhhhc
Q psy18096         68 GILASQELLD--SLIKERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCLIL  130 (131)
Q Consensus        68 y~~Ai~~~~~--~~~~~~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~~~ka~~rrg~a~~~  130 (131)
                      |.+||++|++  .+.|.++.++.|||.+|+|++.|..|..||+.|+.+|..++|||-|||.|...
T Consensus       113 y~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~  177 (536)
T KOG4648|consen  113 YEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARES  177 (536)
T ss_pred             hhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHH
Confidence            9999999999  78899999999999999999999999999999999999999999999998753

>COG0545 FkpA FKBP-type peptidyl-prolyl cis-trans isomerases 1 [Posttranslational modification, protein turnover, chaperones]

Probab=99.16  E-value=4.5e-11  Score=81.48  Aligned_cols=47  Identities=32%  Similarity=0.615  Sum_probs=43.4

Q ss_pred             cchhcccCCCcEEEEEEcCCCCCCCCCCCCCCCCCCceEEEEEeeccc
Q psy18096          2 DYVLPLMETGEECQIEITARFGYGDKGEPSKSIPPGAKLYYSLTLHSV   49 (131)
Q Consensus         2 d~~l~~M~~gE~~~v~i~~~~ayG~~G~~~~~ip~~~~~~~~v~l~~~   49 (131)
                      +.+|+.|++|++++++|+|.+|||.+|.| +.|||++++.|+|+|.++
T Consensus       158 ~egl~~M~vG~k~~l~IP~~laYG~~g~~-g~Ippns~LvFeVeLl~v  204 (205)
T COG0545         158 DEGLQGMKVGGKRKLTIPPELAYGERGVP-GVIPPNSTLVFEVELLDV  204 (205)
T ss_pred             HHHHhhCCCCceEEEEeCchhccCcCCCC-CCCCCCCeEEEEEEEEec
Confidence            57899999999999999999999999975 459999999999999876

>KOG0548|consensus

Probab=99.11  E-value=1.3e-10  Score=88.54  Aligned_cols=64  Identities=27%  Similarity=0.217  Sum_probs=61.6

Q ss_pred             HHHHHHHHHH--HhhhhhHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHhhhcC
Q psy18096         68 GILASQELLD--SLIKERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCLILT  131 (131)
Q Consensus        68 y~~Ai~~~~~--~~~~~~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~~~ka~~rrg~a~~~~  131 (131)
                      |..||.+|+.  .++|.+-.+|.||++||.++++|.+|+.|..+.++++|+++|+|.|+|-|++++
T Consensus        18 ~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~l   83 (539)
T KOG0548|consen   18 FETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGL   83 (539)
T ss_pred             HHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhc
Confidence            9999999999  889999999999999999999999999999999999999999999999998763

>KOG0550|consensus

Probab=99.10  E-value=6.2e-11  Score=88.27  Aligned_cols=63  Identities=30%  Similarity=0.417  Sum_probs=57.8

Q ss_pred             HHHHHHHHHH--Hh----hhhhHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHhhhc
Q psy18096         68 GILASQELLD--SL----IKERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCLIL  130 (131)
Q Consensus        68 y~~Ai~~~~~--~~----~~~~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~~~ka~~rrg~a~~~  130 (131)
                      |+.|-++|+.  .+    ...++.+|.|||.+..++|+..+||.||+.|+.+||..+|||.|||+|++.
T Consensus       265 y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~  333 (486)
T KOG0550|consen  265 YRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLA  333 (486)
T ss_pred             hhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHH
Confidence            8999999998  33    356788999999999999999999999999999999999999999999874

>KOG4642|consensus

Probab=99.09  E-value=1.5e-10  Score=80.94  Aligned_cols=63  Identities=25%  Similarity=0.191  Sum_probs=59.4

Q ss_pred             HHHHHHHHHH--HhhhhhHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHhhhc
Q psy18096         68 GILASQELLD--SLIKERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCLIL  130 (131)
Q Consensus        68 y~~Ai~~~~~--~~~~~~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~~~ka~~rrg~a~~~  130 (131)
                      |..||..|.+  -+.|..+++|.|+|.||+|+++|+.+..||.+||+++|+.+|++|-.|++++.
T Consensus        26 y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~   90 (284)
T KOG4642|consen   26 YDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQ   90 (284)
T ss_pred             hchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHh
Confidence            8999999998  67899999999999999999999999999999999999999999999998763

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=99.09  E-value=6.4e-10  Score=63.77  Aligned_cols=48  Identities=33%  Similarity=0.393  Sum_probs=42.0

Q ss_pred             HHHHHHHHHH--HhhhhhHHHHHHHHHHHHHhC-ChHHHHHHHHHHHhhCC
Q psy18096         68 GILASQELLD--SLIKERINCYNNLAQAQIKLG-SLEPALMSLENVLNLDP  115 (131)
Q Consensus        68 y~~Ai~~~~~--~~~~~~~~~~~N~a~~~~kl~-~~~~a~~~~~~al~~dp  115 (131)
                      |.+|+..|++  +++|..+.++.|+|.||.++| +|.+|+.+++++|++||
T Consensus        19 ~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P   69 (69)
T PF13414_consen   19 YEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP   69 (69)
T ss_dssp             HHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence            8888888888  778888888889999999888 68899999999988887

...

>KOG0376|consensus

Probab=99.08  E-value=2.9e-11  Score=91.26  Aligned_cols=63  Identities=25%  Similarity=0.245  Sum_probs=60.6

Q ss_pred             HHHHHHHHHH--HhhhhhHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHhhhc
Q psy18096         68 GILASQELLD--SLIKERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCLIL  130 (131)
Q Consensus        68 y~~Ai~~~~~--~~~~~~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~~~ka~~rrg~a~~~  130 (131)
                      |..||..|++  +++|..+.++.|||++++|.++|..|+.|+.+||++||.+.|+|+|||.|.+.
T Consensus        20 fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~   84 (476)
T KOG0376|consen   20 FDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMA   84 (476)
T ss_pred             HHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHh
Confidence            9999999999  89999999999999999999999999999999999999999999999998764

>PF00254 FKBP_C: FKBP-type peptidyl-prolyl cis-trans isomerase; InterPro: IPR001179 Synonym(s): Peptidylprolyl cis-trans isomerase FKBP-type peptidylprolyl isomerases (5

Probab=99.05  E-value=2.2e-10  Score=69.85  Aligned_cols=47  Identities=28%  Similarity=0.556  Sum_probs=43.2

Q ss_pred             CcchhcccCCCcEEEEEEcCCCCCCCCCCCCCCCCCCceEEEEEeec
Q psy18096          1 MDYVLPLMETGEECQIEITARFGYGDKGEPSKSIPPGAKLYYSLTLH   47 (131)
Q Consensus         1 ld~~l~~M~~gE~~~v~i~~~~ayG~~G~~~~~ip~~~~~~~~v~l~   47 (131)
                      +|.+|..|++||++.|.++|..+||+.|.....||+++++.|+|+|.
T Consensus        48 ~e~al~~m~~Ge~~~~~vp~~~ayg~~~~~~~~ip~~~~l~f~Iell   94 (94)
T PF00254_consen   48 LEEALIGMKVGEKREFYVPPELAYGEKGLEPPKIPPNSTLVFEIELL   94 (94)
T ss_dssp             HHHHHTTSBTTEEEEEEEEGGGTTTTTTBCTTTBTTTSEEEEEEEEE
T ss_pred             hhhhcccccCCCEeeeEeCChhhcCccccCCCCcCCCCeEEEEEEEC
Confidence            47899999999999999999999999997556799999999999984

2.1.8 from EC) in vertebrates, are receptors for the two immunosuppressants, FK506 and rapamycin. The drugs inhibit T cell proliferation by arresting two distinct cytoplasmic signal transmission pathways. Peptidylprolyl isomerases accelerate protein folding by catalysing the cis-trans isomerisation of proline imidic peptide bonds in oligopeptides. These proteins are found in a variety of organisms.; GO: 0006457 protein folding; PDB: 1IX5_A 3JXV_A 3JYM_A 1T11_A 1PBK_A 1FD9_A 2VCD_A 3B7X_A 1Q6H_B 1Q6I_B ....

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=99.03  E-value=1.2e-09  Score=81.65  Aligned_cols=63  Identities=30%  Similarity=0.353  Sum_probs=59.7

Q ss_pred             HHHHHHHHHH--HhhhhhHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHhhhc
Q psy18096         68 GILASQELLD--SLIKERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCLIL  130 (131)
Q Consensus        68 y~~Ai~~~~~--~~~~~~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~~~ka~~rrg~a~~~  130 (131)
                      |.+|+.+|++  ++.|....+|.|+|.||+++|++++|+.+++++|.++|++..+|+++|.++..
T Consensus        18 ~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~   82 (356)
T PLN03088         18 FALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMK   82 (356)
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHH
Confidence            9999999999  78899999999999999999999999999999999999999999999998864

>TIGR03516 ppisom_GldI peptidyl-prolyl isomerase, gliding motility-associated

Probab=99.01  E-value=2.9e-10  Score=77.12  Aligned_cols=49  Identities=24%  Similarity=0.386  Sum_probs=45.2

Q ss_pred             CcchhcccCCCcEEEEEEcCCCCCCCCCCCCCCCCCCceEEEEEeecccc
Q psy18096          1 MDYVLPLMETGEECQIEITARFGYGDKGEPSKSIPPGAKLYYSLTLHSVL   50 (131)
Q Consensus         1 ld~~l~~M~~gE~~~v~i~~~~ayG~~G~~~~~ip~~~~~~~~v~l~~~~   50 (131)
                      ++.+|..|++||+++|+++|..|||..|. ...|||++++.|+++|.++.
T Consensus       128 l~e~L~~Mk~Ge~~~~~iP~~~AYG~~g~-~~~Ippns~L~f~IeL~~i~  176 (177)
T TIGR03516       128 LRDGLKLMKEGETATFLFPSHKAYGYYGD-QNKIGPNLPIISTVTLLNIK  176 (177)
T ss_pred             HHHHHcCCCCCCEEEEEECHHHcCCCCCC-CCCcCcCCcEEEEEEEEEec
Confidence            47899999999999999999999999995 47899999999999999874

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldI is a FKBP-type peptidyl-prolyl cis-trans isomerase (pfam00254) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockout of this gene abolishes the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. This family is only found in Bacteroidetes containing the suite of genes proposed to confer the gliding motility phenotype.

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=99.00  E-value=2.3e-09  Score=71.02  Aligned_cols=63  Identities=10%  Similarity=-0.005  Sum_probs=59.7

Q ss_pred             HHHHHHHHHH--HhhhhhHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHhhhc
Q psy18096         68 GILASQELLD--SLIKERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCLIL  130 (131)
Q Consensus        68 y~~Ai~~~~~--~~~~~~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~~~ka~~rrg~a~~~  130 (131)
                      |.+|.+.|.-  .++|.+...|.|+|.|+..+|+|.+||..+.+++.++|+|+.++|+.|.+++.
T Consensus        51 l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~  115 (157)
T PRK15363         51 FAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYLA  115 (157)
T ss_pred             HHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHH
Confidence            7888888877  88999999999999999999999999999999999999999999999999875

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=98.99  E-value=2.4e-09  Score=70.35  Aligned_cols=61  Identities=7%  Similarity=-0.097  Sum_probs=31.4

Q ss_pred             HHHHHHHHHH--HhhhhhHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHhh
Q psy18096         68 GILASQELLD--SLIKERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCL  128 (131)
Q Consensus        68 y~~Ai~~~~~--~~~~~~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~~~ka~~rrg~a~  128 (131)
                      |.+|+..|..  .++|.....+.|+|.|+..+|++++|+..++++|.++|+++.++..+|.+.
T Consensus        74 ~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~  136 (144)
T PRK15359         74 YTTAINFYGHALMLDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQ  136 (144)
T ss_pred             HHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence            4444444444  444555555555555555555555555555555555555555555555443

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=98.97  E-value=1.9e-09  Score=61.77  Aligned_cols=48  Identities=27%  Similarity=0.398  Sum_probs=45.3

Q ss_pred             hHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHhhhc
Q psy18096         83 RINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCLIL  130 (131)
Q Consensus        83 ~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~~~ka~~rrg~a~~~  130 (131)
                      ++..|.++|.++..+|+|++|+..++++|++||+++.+|+++|.++..
T Consensus         2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~   49 (69)
T PF13414_consen    2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMK   49 (69)
T ss_dssp             SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence            467899999999999999999999999999999999999999999864

...

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=98.92  E-value=5.7e-09  Score=68.56  Aligned_cols=63  Identities=16%  Similarity=0.054  Sum_probs=60.7

Q ss_pred             HHHHHHHHHH--HhhhhhHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHhhhc
Q psy18096         68 GILASQELLD--SLIKERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCLIL  130 (131)
Q Consensus        68 y~~Ai~~~~~--~~~~~~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~~~ka~~rrg~a~~~  130 (131)
                      |.+|+..|..  .++|....++.++|.++.++|+|++|+..+++++.++|+++.+++++|.++..
T Consensus        40 ~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~  104 (144)
T PRK15359         40 YSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKM  104 (144)
T ss_pred             HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHH
Confidence            9999999999  88999999999999999999999999999999999999999999999999864

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=98.91  E-value=3.1e-09  Score=52.69  Aligned_cols=34  Identities=41%  Similarity=0.640  Sum_probs=30.9

Q ss_pred             HHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCC
Q psy18096         84 INCYNNLAQAQIKLGSLEPALMSLENVLNLDPNN  117 (131)
Q Consensus        84 ~~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~~  117 (131)
                      +.+|+|+|.+|..+|+|++|+.+|++||++||+|
T Consensus         1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~   34 (34)
T PF00515_consen    1 AEAYYNLGNAYFQLGDYEEALEYYQRALELDPDN   34 (34)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred             CHHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence            3679999999999999999999999999999985

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>KOG0552|consensus

Probab=98.89  E-value=2e-09  Score=74.94  Aligned_cols=47  Identities=34%  Similarity=0.588  Sum_probs=44.1

Q ss_pred             CcchhcccCCCcEEEEEEcCCCCCCCCCCCCCCCCCCceEEEEEeeccc
Q psy18096          1 MDYVLPLMETGEECQIEITARFGYGDKGEPSKSIPPGAKLYYSLTLHSV   49 (131)
Q Consensus         1 ld~~l~~M~~gE~~~v~i~~~~ayG~~G~~~~~ip~~~~~~~~v~l~~~   49 (131)
                      +|.+|.+|++|-+.+|+|+|.+|||..|.  +.|||++++.|+|+|..+
T Consensus       179 ~d~gv~GMkvGGkRrviIPp~lgYg~~g~--~~IppnstL~fdVEL~~v  225 (226)
T KOG0552|consen  179 WDVGVEGMKVGGKRRVIIPPELGYGKKGV--PEIPPNSTLVFDVELLSV  225 (226)
T ss_pred             HHHhhhhhccCCeeEEEeCccccccccCc--CcCCCCCcEEEEEEEEec
Confidence            57899999999999999999999999997  599999999999999875

>PRK11570 peptidyl-prolyl cis-trans isomerase; Provisional

Probab=98.83  E-value=3.7e-09  Score=73.33  Aligned_cols=48  Identities=29%  Similarity=0.551  Sum_probs=44.2

Q ss_pred             CcchhcccCCCcEEEEEEcCCCCCCCCCCCCCCCCCCceEEEEEeeccc
Q psy18096          1 MDYVLPLMETGEECQIEITARFGYGDKGEPSKSIPPGAKLYYSLTLHSV   49 (131)
Q Consensus         1 ld~~l~~M~~gE~~~v~i~~~~ayG~~G~~~~~ip~~~~~~~~v~l~~~   49 (131)
                      ++.+|..|++|+++.|+|+|+.|||..|.+ +.|||++++.|+|+|.++
T Consensus       158 ~~eaL~~M~~G~k~~~~IP~~lAYG~~g~~-~~Ipp~s~Lif~veLl~i  205 (206)
T PRK11570        158 WIEALTLMPVGSKWELTIPHELAYGERGAG-ASIPPFSTLVFEVELLEI  205 (206)
T ss_pred             HHHHHcCCCCCCEEEEEECHHHcCCCCCCC-CCcCCCCeEEEEEEEEEE
Confidence            367899999999999999999999999963 789999999999999876

>PRK11189 lipoprotein NlpI; Provisional

Probab=98.82  E-value=8.3e-09  Score=75.22  Aligned_cols=90  Identities=22%  Similarity=0.301  Sum_probs=71.3

Q ss_pred             EEEEEeeccccCCccCcCcchhh----hHHHH--------HHHHHHHHHH--HhhhhhHHHHHHHHHHHHHhCChHHHHH
Q psy18096         40 LYYSLTLHSVLPDFDLAELPVEK----RLDFG--------GILASQELLD--SLIKERINCYNNLAQAQIKLGSLEPALM  105 (131)
Q Consensus        40 ~~~~v~l~~~~~~~~~~~~~~~e----~~~~~--------y~~Ai~~~~~--~~~~~~~~~~~N~a~~~~kl~~~~~a~~  105 (131)
                      ...++.+.++........++.+.    ...+|        +.+|+..|++  +++|..+.+|+|+|.++..+|+|++|+.
T Consensus        40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~  119 (296)
T PRK11189         40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYE  119 (296)
T ss_pred             hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence            34455566665554433443333    33444        7889998888  7889999999999999999999999999


Q ss_pred             HHHHHHhhCCCCHHHHHHHHHhhh
Q psy18096        106 SLENVLNLDPNNIKALQRKAKCLI  129 (131)
Q Consensus       106 ~~~~al~~dp~~~ka~~rrg~a~~  129 (131)
                      .++++++++|++..+|+++|.++.
T Consensus       120 ~~~~Al~l~P~~~~a~~~lg~~l~  143 (296)
T PRK11189        120 AFDSVLELDPTYNYAYLNRGIALY  143 (296)
T ss_pred             HHHHHHHhCCCCHHHHHHHHHHHH
Confidence            999999999999999999999875

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=98.73  E-value=6.4e-08  Score=55.11  Aligned_cols=59  Identities=27%  Similarity=0.139  Sum_probs=52.2

Q ss_pred             HHHHHHHHHH--HhhhhhHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHH
Q psy18096         68 GILASQELLD--SLIKERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAK  126 (131)
Q Consensus        68 y~~Ai~~~~~--~~~~~~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~~~ka~~rrg~  126 (131)
                      |.+|+..|++  ...|.+..++.++|.||++.|++++|...+.+++..+|++...+.=+++
T Consensus         7 ~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~   67 (68)
T PF14559_consen    7 YDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQ   67 (68)
T ss_dssp             HHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhc
Confidence            8899999999  8889999999999999999999999999999999999998766654443

...

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=98.72  E-value=6.8e-08  Score=54.65  Aligned_cols=51  Identities=22%  Similarity=0.193  Sum_probs=46.3

Q ss_pred             HHHHHHHHHH--HhhhhhHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCH
Q psy18096         68 GILASQELLD--SLIKERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNI  118 (131)
Q Consensus        68 y~~Ai~~~~~--~~~~~~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~~~  118 (131)
                      |.+|+..|+.  +..|....++..+|.|+..+|++++|+..++++++++|+|+
T Consensus        13 ~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p   65 (65)
T PF13432_consen   13 YDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP   65 (65)
T ss_dssp             HHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred             HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence            8999999999  67799999999999999999999999999999999999985

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=98.72  E-value=1e-07  Score=55.05  Aligned_cols=59  Identities=27%  Similarity=0.242  Sum_probs=54.3

Q ss_pred             HHHHHHHHHH--HhhhhhHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHH
Q psy18096         68 GILASQELLD--SLIKERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAK  126 (131)
Q Consensus        68 y~~Ai~~~~~--~~~~~~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~~~ka~~rrg~  126 (131)
                      |.+|+++++.  .+.|..+.++.++|.|+.++|+|.+|+.+++++++.+|++..+..-+++
T Consensus        11 ~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~a~   71 (73)
T PF13371_consen   11 YEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALRAM   71 (73)
T ss_pred             HHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHHHh
Confidence            8899999999  8899999999999999999999999999999999999999888765543

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=98.71  E-value=5.4e-08  Score=51.14  Aligned_cols=43  Identities=30%  Similarity=0.366  Sum_probs=40.1

Q ss_pred             HHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHh
Q psy18096         85 NCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKC  127 (131)
Q Consensus        85 ~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~~~ka~~rrg~a  127 (131)
                      .++..+|.+|..+|++++|++.++++++.+|+|..+|+..|++
T Consensus         2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~l   44 (44)
T PF13428_consen    2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQL   44 (44)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhhC
Confidence            4688999999999999999999999999999999999998863

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=98.68  E-value=1.1e-07  Score=60.99  Aligned_cols=63  Identities=19%  Similarity=0.130  Sum_probs=53.0

Q ss_pred             HHHHHHHHHH--HhhhhhHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHhhhc
Q psy18096         68 GILASQELLD--SLIKERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCLIL  130 (131)
Q Consensus        68 y~~Ai~~~~~--~~~~~~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~~~ka~~rrg~a~~~  130 (131)
                      |.+|+..++.  .+.|....++.++|.++.++|++++|+..+++++..+|++...++.+|.++..
T Consensus        33 ~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~   97 (135)
T TIGR02552        33 YDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLA   97 (135)
T ss_pred             HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Confidence            8888888877  66788888888888888888888888888888888888888888888887753

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=98.68  E-value=7.4e-08  Score=47.44  Aligned_cols=34  Identities=41%  Similarity=0.606  Sum_probs=30.9

Q ss_pred             HHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCC
Q psy18096         84 INCYNNLAQAQIKLGSLEPALMSLENVLNLDPNN  117 (131)
Q Consensus        84 ~~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~~  117 (131)
                      +.++.++|.++.++|+|++|+.+++++++++|+|
T Consensus         1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~   34 (34)
T PF07719_consen    1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN   34 (34)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred             CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence            3578999999999999999999999999999986

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=98.63  E-value=9.1e-08  Score=56.99  Aligned_cols=62  Identities=29%  Similarity=0.269  Sum_probs=54.6

Q ss_pred             HHHHHHHHHH--Hhhhh--hHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHhhhc
Q psy18096         68 GILASQELLD--SLIKE--RINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCLIL  130 (131)
Q Consensus        68 y~~Ai~~~~~--~~~~~--~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~~~ka~~rrg~a~~~  130 (131)
                      |++|+.++++  +..|.  ...++.++|.||.++|+|++|+..+++ +..+|.+....+-.|++++.
T Consensus         5 y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~   70 (84)
T PF12895_consen    5 YENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLK   70 (84)
T ss_dssp             HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHH
Confidence            8899999999  44442  667888999999999999999999999 99999999999999999864

>PRK10902 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional

Probab=98.59  E-value=6.9e-08  Score=69.48  Aligned_cols=51  Identities=24%  Similarity=0.412  Sum_probs=46.0

Q ss_pred             CcchhcccCCCcEEEEEEcCCCCCCCCCCCCCCCCCCceEEEEEeeccccCCc
Q psy18096          1 MDYVLPLMETGEECQIEITARFGYGDKGEPSKSIPPGAKLYYSLTLHSVLPDF   53 (131)
Q Consensus         1 ld~~l~~M~~gE~~~v~i~~~~ayG~~G~~~~~ip~~~~~~~~v~l~~~~~~~   53 (131)
                      ++.+|..|++|+++.|+|+|.++||..|.  +.|||++++.|+|+|.++....
T Consensus       202 ~~EaL~~Mk~Gek~~l~IP~~laYG~~g~--~gIppns~LvfeVeLl~V~~~~  252 (269)
T PRK10902        202 WTEGLKNIKKGGKIKLVIPPELAYGKAGV--PGIPANSTLVFDVELLDVKPAP  252 (269)
T ss_pred             HHHHHhcCCCCcEEEEEECchhhCCCCCC--CCCCCCCcEEEEEEEEEeccCc
Confidence            36789999999999999999999999995  4799999999999999987544

>KOG0553|consensus

Probab=98.47  E-value=2.9e-07  Score=66.44  Aligned_cols=56  Identities=25%  Similarity=0.271  Sum_probs=50.4

Q ss_pred             HHHHHHHHHH--HhhhhhHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHH
Q psy18096         68 GILASQELLD--SLIKERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQR  123 (131)
Q Consensus        68 y~~Ai~~~~~--~~~~~~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~~~ka~~r  123 (131)
                      |..||+.+..  .++|.+.++|..++.+|+-+|+|.+|++.|.+||++||+|.-.+-.
T Consensus       131 ~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A~~aykKaLeldP~Ne~~K~n  188 (304)
T KOG0553|consen  131 YEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEAIEAYKKALELDPDNESYKSN  188 (304)
T ss_pred             hHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHHHHHHHhhhccCCCcHHHHHH
Confidence            7788888877  8899999999999999999999999999999999999999744433

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=98.46  E-value=4e-07  Score=69.23  Aligned_cols=59  Identities=17%  Similarity=0.020  Sum_probs=47.7

Q ss_pred             cCcchhhhHHHH--------HHHHHHHHHH--HhhhhhHH---HHHHHHHHHHHhCChHHHHHHHHHHHhhC
Q psy18096         56 AELPVEKRLDFG--------GILASQELLD--SLIKERIN---CYNNLAQAQIKLGSLEPALMSLENVLNLD  114 (131)
Q Consensus        56 ~~~~~~e~~~~~--------y~~Ai~~~~~--~~~~~~~~---~~~N~a~~~~kl~~~~~a~~~~~~al~~d  114 (131)
                      .+.......+.|        |.+|+..|++  +++|....   +|+|+|.||.++|++++|+.++.+||++.
T Consensus        71 dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels  142 (453)
T PLN03098         71 DVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY  142 (453)
T ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence            344445555555        9999999998  78888774   49999999999999999999999999973

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=98.41  E-value=1.5e-06  Score=65.00  Aligned_cols=61  Identities=20%  Similarity=0.147  Sum_probs=57.5

Q ss_pred             HHHHHHHHHH--HhhhhhHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHhh
Q psy18096         68 GILASQELLD--SLIKERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCL  128 (131)
Q Consensus        68 y~~Ai~~~~~--~~~~~~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~~~ka~~rrg~a~  128 (131)
                      |.+|+..+++  +++|....+|+++|.++..+|+|++|+..++++++++|++..+....+.+.
T Consensus        52 ~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~  114 (356)
T PLN03088         52 FTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQTAKAALEKGASLAPGDSRFTKLIKECD  114 (356)
T ss_pred             HHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            9999999999  888999999999999999999999999999999999999999998887763

>KOG1308|consensus

Probab=98.40  E-value=4e-08  Score=71.98  Aligned_cols=63  Identities=16%  Similarity=0.112  Sum_probs=59.3

Q ss_pred             HHHHHHHHHH--HhhhhhHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHhhhc
Q psy18096         68 GILASQELLD--SLIKERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCLIL  130 (131)
Q Consensus        68 y~~Ai~~~~~--~~~~~~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~~~ka~~rrg~a~~~  130 (131)
                      +..||..++.  ++.|....+|.+|+.+++|++.+..||+||+.||+++|+..+.|-.||.|+.+
T Consensus       130 ~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rl  194 (377)
T KOG1308|consen  130 FDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERL  194 (377)
T ss_pred             hhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHH
Confidence            8888888888  88999999999999999999999999999999999999999999999998764

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=98.36  E-value=1.4e-06  Score=69.29  Aligned_cols=61  Identities=20%  Similarity=0.167  Sum_probs=33.6

Q ss_pred             HHHHHHHHHH--HhhhhhHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHhh
Q psy18096         68 GILASQELLD--SLIKERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCL  128 (131)
Q Consensus        68 y~~Ai~~~~~--~~~~~~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~~~ka~~rrg~a~  128 (131)
                      |.+|+..|++  +++|....++.++|.++..+|+|++|+.++++++.++|++..+++.+|.++
T Consensus       381 ~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~  443 (615)
T TIGR00990       381 PDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQ  443 (615)
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHH
Confidence            4445555544  444555555555555555555555555555555555555555555555544

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=98.33  E-value=2.1e-06  Score=46.87  Aligned_cols=38  Identities=32%  Similarity=0.499  Sum_probs=32.6

Q ss_pred             HHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHH
Q psy18096         85 NCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQ  122 (131)
Q Consensus        85 ~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~~~ka~~  122 (131)
                      .+++.+|.++.|+|+|.+|.+.|+.+|+.+|+|..|.-
T Consensus         2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~   39 (53)
T PF14853_consen    2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQS   39 (53)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHH
T ss_pred             hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHH
Confidence            36778999999999999999999999999999987754

>PLN02789 farnesyltranstransferase

Probab=98.33  E-value=2.7e-06  Score=62.85  Aligned_cols=59  Identities=17%  Similarity=0.101  Sum_probs=46.5

Q ss_pred             HHHHHHHH--HhhhhhHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHhh
Q psy18096         70 LASQELLD--SLIKERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCL  128 (131)
Q Consensus        70 ~Ai~~~~~--~~~~~~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~~~ka~~rrg~a~  128 (131)
                      +++.++++  +++|.+..+|++|+.+..++|+|++++.+|+++|+.||.|..||++||.++
T Consensus       126 ~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl  186 (320)
T PLN02789        126 KELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVI  186 (320)
T ss_pred             HHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHH
Confidence            34444434  566778888888888888888888888888888888888888888888765

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=98.33  E-value=1.3e-06  Score=49.27  Aligned_cols=43  Identities=28%  Similarity=0.366  Sum_probs=40.2

Q ss_pred             HHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHhhhc
Q psy18096         88 NNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCLIL  130 (131)
Q Consensus        88 ~N~a~~~~kl~~~~~a~~~~~~al~~dp~~~ka~~rrg~a~~~  130 (131)
                      +++|..+++.|+|++|+..++++++.+|++..+|+..|.++..
T Consensus         1 ~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~   43 (65)
T PF13432_consen    1 YALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQ   43 (65)
T ss_dssp             HHHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHH
T ss_pred             ChHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence            3689999999999999999999999999999999999999864

>KOG0543|consensus

Probab=98.33  E-value=1.4e-06  Score=65.12  Aligned_cols=51  Identities=22%  Similarity=0.219  Sum_probs=49.6

Q ss_pred             HHHHHHHHHH--HhhhhhHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCH
Q psy18096         68 GILASQELLD--SLIKERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNI  118 (131)
Q Consensus        68 y~~Ai~~~~~--~~~~~~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~~~  118 (131)
                      |..||..+++  +++|.++++++.++.|++-+++|+.|+.++.+|++++|+|-
T Consensus       273 ~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nk  325 (397)
T KOG0543|consen  273 YKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNK  325 (397)
T ss_pred             HHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcH
Confidence            9999999999  89999999999999999999999999999999999999994

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=98.30  E-value=7.7e-06  Score=56.48  Aligned_cols=63  Identities=22%  Similarity=0.168  Sum_probs=53.5

Q ss_pred             HHHHHHHHHH--HhhhhhHHHHHHHHHHH-HHhCC--hHHHHHHHHHHHhhCCCCHHHHHHHHHhhhc
Q psy18096         68 GILASQELLD--SLIKERINCYNNLAQAQ-IKLGS--LEPALMSLENVLNLDPNNIKALQRKAKCLIL  130 (131)
Q Consensus        68 y~~Ai~~~~~--~~~~~~~~~~~N~a~~~-~kl~~--~~~a~~~~~~al~~dp~~~ka~~rrg~a~~~  130 (131)
                      |.+|+..|++  .+.|.+..++.++|.++ ...|+  +++|+..+++++++||++..+++..|.+++.
T Consensus        89 ~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~  156 (198)
T PRK10370         89 YDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFM  156 (198)
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHH
Confidence            8888888888  78888899999999885 67777  4899999999999999999999988887754

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=98.29  E-value=5.7e-06  Score=47.93  Aligned_cols=62  Identities=34%  Similarity=0.327  Sum_probs=55.1

Q ss_pred             HHHHHHHHHH--HhhhhhHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHhhh
Q psy18096         68 GILASQELLD--SLIKERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCLI  129 (131)
Q Consensus        68 y~~Ai~~~~~--~~~~~~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~~~ka~~rrg~a~~  129 (131)
                      |.+|+..+..  ...|....++.++|.++...+++++|+..+++++...|.+..+++..|.++.
T Consensus        16 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (100)
T cd00189          16 YDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYY   79 (100)
T ss_pred             HHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHH
Confidence            8888988887  5566667889999999999999999999999999999999999998888765

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=98.29  E-value=7.2e-06  Score=55.13  Aligned_cols=62  Identities=21%  Similarity=0.161  Sum_probs=54.2

Q ss_pred             HHHHHHHHHH--Hhhhh---hHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHhhh
Q psy18096         68 GILASQELLD--SLIKE---RINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCLI  129 (131)
Q Consensus        68 y~~Ai~~~~~--~~~~~---~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~~~ka~~rrg~a~~  129 (131)
                      |.+|+.+|.+  .+.+.   ...++.|+|.++.++|+|++|+..+.+++.++|++..+++..|.++.
T Consensus        51 ~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~  117 (172)
T PRK02603         51 YAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVIYH  117 (172)
T ss_pred             HHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence            8999999988  33322   35789999999999999999999999999999999999999988874

>PRK12370 invasion protein regulator; Provisional

Probab=98.28  E-value=3.8e-06  Score=66.17  Aligned_cols=62  Identities=11%  Similarity=0.016  Sum_probs=52.0

Q ss_pred             HHHHHHHHH--HhhhhhHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHhhhc
Q psy18096         69 ILASQELLD--SLIKERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCLIL  130 (131)
Q Consensus        69 ~~Ai~~~~~--~~~~~~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~~~ka~~rrg~a~~~  130 (131)
                      .+|+..+++  +++|....++.++|.++..+|++++|+..++++++++|++..+|+..|.++..
T Consensus       321 ~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~  384 (553)
T PRK12370        321 IKAKEHAIKATELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFM  384 (553)
T ss_pred             HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            456666666  77888888999999999999999999999999999999999999988887753

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=98.28  E-value=6e-06  Score=57.01  Aligned_cols=61  Identities=18%  Similarity=0.137  Sum_probs=55.9

Q ss_pred             HHHHHHHHHH--HhhhhhHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHhh
Q psy18096         68 GILASQELLD--SLIKERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCL  128 (131)
Q Consensus        68 y~~Ai~~~~~--~~~~~~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~~~ka~~rrg~a~  128 (131)
                      ..+++..+..  ..+|.+...|.++|.+|+.+|++++|+..+++++.++|++...++..|.++
T Consensus        55 ~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL  117 (198)
T PRK10370         55 PEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVL  117 (198)
T ss_pred             HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            4667777776  778999999999999999999999999999999999999999999999875

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=98.28  E-value=1.9e-06  Score=42.33  Aligned_cols=33  Identities=39%  Similarity=0.625  Sum_probs=30.4

Q ss_pred             HHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCC
Q psy18096         85 NCYNNLAQAQIKLGSLEPALMSLENVLNLDPNN  117 (131)
Q Consensus        85 ~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~~  117 (131)
                      .+|.++|.+|.++|++++|+..+.++++++|+|
T Consensus         2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~n   34 (34)
T PF13181_consen    2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPDN   34 (34)
T ss_dssp             HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT-
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence            578999999999999999999999999999965

...

>KOG0550|consensus

Probab=98.25  E-value=3e-07  Score=68.96  Aligned_cols=63  Identities=21%  Similarity=0.219  Sum_probs=60.0

Q ss_pred             HHHHHHHHHH--HhhhhhHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHhhhc
Q psy18096         68 GILASQELLD--SLIKERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCLIL  130 (131)
Q Consensus        68 y~~Ai~~~~~--~~~~~~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~~~ka~~rrg~a~~~  130 (131)
                      |..|+..|+.  ++.|.++.+|.|||++++.+++|++|+-++.+.++++|...|+..|-++++..
T Consensus        65 Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~a  129 (486)
T KOG0550|consen   65 YGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCHLA  129 (486)
T ss_pred             HHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhhhh
Confidence            9999999999  78899999999999999999999999999999999999999999999998864

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=98.24  E-value=9.5e-06  Score=54.25  Aligned_cols=62  Identities=21%  Similarity=0.072  Sum_probs=53.7

Q ss_pred             HHHHHHHHHH--Hhhhh---hHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHhhh
Q psy18096         68 GILASQELLD--SLIKE---RINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCLI  129 (131)
Q Consensus        68 y~~Ai~~~~~--~~~~~---~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~~~ka~~rrg~a~~  129 (131)
                      |.+|+..|.+  .+.+.   .+.++.|+|.++.++|++++|+..+.+++.++|.+..+++..|.++.
T Consensus        51 ~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~i~~  117 (168)
T CHL00033         51 YAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAVICH  117 (168)
T ss_pred             HHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHH
Confidence            8899998888  33322   45689999999999999999999999999999999999988887765

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=98.18  E-value=1.3e-05  Score=51.34  Aligned_cols=54  Identities=20%  Similarity=0.111  Sum_probs=50.1

Q ss_pred             HHHHHHHHHH--HhhhhhHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHH
Q psy18096         68 GILASQELLD--SLIKERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKAL  121 (131)
Q Consensus        68 y~~Ai~~~~~--~~~~~~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~~~ka~  121 (131)
                      |.+|+.+++.  ...|.....+.++|.|+..+|++++|+..++++++++|++....
T Consensus        67 ~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~  122 (135)
T TIGR02552        67 YEEAIDAYALAAALDPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPEYS  122 (135)
T ss_pred             HHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHH
Confidence            8899999988  77889999999999999999999999999999999999998743

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>PRK11189 lipoprotein NlpI; Provisional

Probab=98.18  E-value=9.4e-06  Score=59.24  Aligned_cols=52  Identities=23%  Similarity=0.006  Sum_probs=49.6

Q ss_pred             HHHHHHHHHH--HhhhhhHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHH
Q psy18096         68 GILASQELLD--SLIKERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIK  119 (131)
Q Consensus        68 y~~Ai~~~~~--~~~~~~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~~~k  119 (131)
                      |.+|+..|++  +++|....++.|+|.++..+|++++|+.+++++++++|++..
T Consensus       114 ~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~  167 (296)
T PRK11189        114 FDAAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPY  167 (296)
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH
Confidence            9999999999  889999999999999999999999999999999999999973

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=98.15  E-value=9.7e-06  Score=47.27  Aligned_cols=47  Identities=23%  Similarity=0.163  Sum_probs=38.1

Q ss_pred             HHHHHHHHHH---------HhhhhhHHHHHHHHHHHHHhCChHHHHHHHHHHHhhC
Q psy18096         68 GILASQELLD---------SLIKERINCYNNLAQAQIKLGSLEPALMSLENVLNLD  114 (131)
Q Consensus        68 y~~Ai~~~~~---------~~~~~~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~d  114 (131)
                      |.+|+.+|++         +-.+..+.++.|+|.||..+|++++|+..+++++++.
T Consensus        21 ~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~   76 (78)
T PF13424_consen   21 YDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIF   76 (78)
T ss_dssp             HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence            5566665555         2335668999999999999999999999999999863

...

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=98.15  E-value=1.9e-05  Score=55.28  Aligned_cols=62  Identities=19%  Similarity=0.083  Sum_probs=53.9

Q ss_pred             HHHHHHHHHH--Hhhhh---hHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHH---HHHHHHHhhh
Q psy18096         68 GILASQELLD--SLIKE---RINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIK---ALQRKAKCLI  129 (131)
Q Consensus        68 y~~Ai~~~~~--~~~~~---~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~~~k---a~~rrg~a~~  129 (131)
                      |.+|+..++.  ...|.   ...+++++|.++.++|+|++|+..++++++.+|++..   ++|.+|.++.
T Consensus        49 ~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~~~  118 (235)
T TIGR03302        49 YTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYLRGLSNY  118 (235)
T ss_pred             HHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHHHHHHHH
Confidence            9999999988  44443   3468899999999999999999999999999998887   7999998875

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>PLN02789 farnesyltranstransferase

Probab=98.14  E-value=1e-05  Score=59.78  Aligned_cols=61  Identities=18%  Similarity=0.082  Sum_probs=42.2

Q ss_pred             HHHHHHHHHH--HhhhhhHHHHHHHHHHHHHhC-ChHHHHHHHHHHHhhCCCCHHHHHHHHHhh
Q psy18096         68 GILASQELLD--SLIKERINCYNNLAQAQIKLG-SLEPALMSLENVLNLDPNNIKALQRKAKCL  128 (131)
Q Consensus        68 y~~Ai~~~~~--~~~~~~~~~~~N~a~~~~kl~-~~~~a~~~~~~al~~dp~~~ka~~rrg~a~  128 (131)
                      +.+|+..+++  ++.|.+.++|++|+.++.+++ .+++++..++++++.+|+|..+|+.|+.++
T Consensus        53 serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l  116 (320)
T PLN02789         53 SPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLA  116 (320)
T ss_pred             CHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHH
Confidence            5566666666  666777777777777777776 467777777777777777777777776554

>KOG4234|consensus

Probab=98.13  E-value=1.7e-05  Score=54.86  Aligned_cols=59  Identities=22%  Similarity=0.169  Sum_probs=53.2

Q ss_pred             HHHHHHHHHH--HhhhhhHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHhh
Q psy18096         68 GILASQELLD--SLIKERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCL  128 (131)
Q Consensus        68 y~~Ai~~~~~--~~~~~~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~~~ka~~rrg~a~  128 (131)
                      ++.||+.+++  ++.|.+..++..||.+|-++..|++|+.|+.+++++||.+..  .|+|.+.
T Consensus       150 ~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek~eealeDyKki~E~dPs~~e--ar~~i~r  210 (271)
T KOG4234|consen  150 WESAIEDCSKAIELNPTYEKALERRAEAYEKMEKYEEALEDYKKILESDPSRRE--AREAIAR  210 (271)
T ss_pred             HHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCcchHH--HHHHHHh
Confidence            8889998888  899999999999999999999999999999999999999874  3666554

>KOG0624|consensus

Probab=98.11  E-value=2.1e-06  Score=63.58  Aligned_cols=63  Identities=16%  Similarity=0.167  Sum_probs=51.1

Q ss_pred             HHHHHHHHHH------HhhhhhHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHhhhc
Q psy18096         68 GILASQELLD------SLIKERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCLIL  130 (131)
Q Consensus        68 y~~Ai~~~~~------~~~~~~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~~~ka~~rrg~a~~~  130 (131)
                      |.+++..+++      +..+.....+--++.||.+-+++.+||..|.++|..||+|+.+|..|+.||++
T Consensus       285 ~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~  353 (504)
T KOG0624|consen  285 WTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLG  353 (504)
T ss_pred             HHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhh
Confidence            7777777776      22344455666788999999999999999999999999999999999999875

>KOG4626|consensus

Probab=98.11  E-value=9.1e-06  Score=64.21  Aligned_cols=61  Identities=25%  Similarity=0.278  Sum_probs=49.6

Q ss_pred             HHHHHHHHHH--HhhhhhHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHhh
Q psy18096         68 GILASQELLD--SLIKERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCL  128 (131)
Q Consensus        68 y~~Ai~~~~~--~~~~~~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~~~ka~~rrg~a~  128 (131)
                      +..|+++|..  ++.|..+.+++|+|..|-.+|++++|+.++.+||.++|.-+.||-++|..|
T Consensus       370 ~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~  432 (966)
T KOG4626|consen  370 IEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTY  432 (966)
T ss_pred             chHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHH
Confidence            5566666666  667888888888888888888888888888888888888888888888765

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=98.09  E-value=9.4e-07  Score=61.68  Aligned_cols=95  Identities=18%  Similarity=0.206  Sum_probs=72.6

Q ss_pred             CCCCceEEEEEeeccccCCccCcCcchhhhHHHHHHHHH------------HHHHH--HhhhhhHHHHHHHHHHHHHhCC
Q psy18096         34 IPPGAKLYYSLTLHSVLPDFDLAELPVEKRLDFGGILAS------------QELLD--SLIKERINCYNNLAQAQIKLGS   99 (131)
Q Consensus        34 ip~~~~~~~~v~l~~~~~~~~~~~~~~~e~~~~~y~~Ai------------~~~~~--~~~~~~~~~~~N~a~~~~kl~~   99 (131)
                      +|-.+.+.-+|.+..++.......++.+++...-|++.+            -.+++  .+.|..+.+|+-++.-++.-|+
T Consensus        35 ~~~qp~lqqEV~iarlsqlL~~~~l~~eeRA~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~  114 (297)
T COG4785          35 VPLQPTLQQEVILARMSQILASRALTDEERAQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGN  114 (297)
T ss_pred             ccCCccHHHHHHHHHHHHHHHhccCChHHHHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhccc
Confidence            444445666666777766666667777776554333333            22222  5679999999999999999999


Q ss_pred             hHHHHHHHHHHHhhCCCCHHHHHHHHHhh
Q psy18096        100 LEPALMSLENVLNLDPNNIKALQRKAKCL  128 (131)
Q Consensus       100 ~~~a~~~~~~al~~dp~~~ka~~rrg~a~  128 (131)
                      |+.|.+.++.++++||.+.-|..+||.++
T Consensus       115 fdaa~eaFds~~ELDp~y~Ya~lNRgi~~  143 (297)
T COG4785         115 FDAAYEAFDSVLELDPTYNYAHLNRGIAL  143 (297)
T ss_pred             chHHHHHhhhHhccCCcchHHHhccceee
Confidence            99999999999999999999999999875

>PRK15331 chaperone protein SicA; Provisional

Probab=98.09  E-value=8.3e-06  Score=54.49  Aligned_cols=63  Identities=13%  Similarity=-0.072  Sum_probs=56.8

Q ss_pred             HHHHHHHHHH--HhhhhhHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHhhhc
Q psy18096         68 GILASQELLD--SLIKERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCLIL  130 (131)
Q Consensus        68 y~~Ai~~~~~--~~~~~~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~~~ka~~rrg~a~~~  130 (131)
                      |.+|..+|.-  -+++.+..++..+|.|+..+++|.+|+..+..+..++++|+...|+-|++++.
T Consensus        53 ~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~  117 (165)
T PRK15331         53 LDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLL  117 (165)
T ss_pred             HHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHH
Confidence            6666666666  66788899999999999999999999999999999999999999999999875

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=98.09  E-value=2.8e-05  Score=52.94  Aligned_cols=62  Identities=29%  Similarity=0.246  Sum_probs=52.2

Q ss_pred             HHHHHHHHHH--HhhhhhHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHhhh
Q psy18096         68 GILASQELLD--SLIKERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCLI  129 (131)
Q Consensus        68 y~~Ai~~~~~--~~~~~~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~~~ka~~rrg~a~~  129 (131)
                      |.+|+..+++  +..|....++.++|.++..+|++++|+..+.++++++|++..+++..|.++.
T Consensus        47 ~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  110 (234)
T TIGR02521        47 LEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLC  110 (234)
T ss_pred             HHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Confidence            8888888887  5667778888889999999999999999999999988888888888877664

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>KOG4626|consensus

Probab=98.08  E-value=1.3e-05  Score=63.37  Aligned_cols=60  Identities=28%  Similarity=0.304  Sum_probs=46.2

Q ss_pred             HHHHHHHH--HhhhhhHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHhhh
Q psy18096         70 LASQELLD--SLIKERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCLI  129 (131)
Q Consensus        70 ~Ai~~~~~--~~~~~~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~~~ka~~rrg~a~~  129 (131)
                      -||+.|.+  +++|....+|+|+|.+.-..|+-.+|.++++++|.+.|+.+.++++.|.++.
T Consensus       304 lAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~  365 (966)
T KOG4626|consen  304 LAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYR  365 (966)
T ss_pred             HHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence            34444444  6678888888888888888888888888888888888888888888887764

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=98.08  E-value=3.1e-05  Score=48.01  Aligned_cols=62  Identities=19%  Similarity=0.064  Sum_probs=38.0

Q ss_pred             HHHHHHHHHH--Hhhhh---hHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCC---HHHHHHHHHhhh
Q psy18096         68 GILASQELLD--SLIKE---RINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNN---IKALQRKAKCLI  129 (131)
Q Consensus        68 y~~Ai~~~~~--~~~~~---~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~~---~ka~~rrg~a~~  129 (131)
                      |.+|++.|..  ...|.   ...++.++|.++.+.|+|++|+..+.+++..+|++   ..+++..|.++.
T Consensus        18 ~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~   87 (119)
T TIGR02795        18 YADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSLQ   87 (119)
T ss_pred             HHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHHH
Confidence            6666666665  22222   24566667777777777777777777777766664   456666666553

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>KOG1125|consensus

Probab=98.07  E-value=4.6e-06  Score=64.73  Aligned_cols=62  Identities=13%  Similarity=0.067  Sum_probs=58.7

Q ss_pred             HHHHHHHHHH--HhhhhhHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHhhh
Q psy18096         68 GILASQELLD--SLIKERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCLI  129 (131)
Q Consensus        68 y~~Ai~~~~~--~~~~~~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~~~ka~~rrg~a~~  129 (131)
                      |.+||++|+.  ..+|....+|+.++++...-++..+||..|.+||+|.|+.+++.|+.|.+++
T Consensus       446 fdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~m  509 (579)
T KOG1125|consen  446 FDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCM  509 (579)
T ss_pred             HHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhh
Confidence            9999999999  7789999999999999999999999999999999999999999999998875

>KOG4555|consensus

Probab=98.06  E-value=2.5e-05  Score=50.61  Aligned_cols=62  Identities=29%  Similarity=0.203  Sum_probs=53.2

Q ss_pred             HHHHHHHHHH--HhhhhhHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCC----HHHHHHHHHhhh
Q psy18096         68 GILASQELLD--SLIKERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNN----IKALQRKAKCLI  129 (131)
Q Consensus        68 y~~Ai~~~~~--~~~~~~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~~----~ka~~rrg~a~~  129 (131)
                      ...||+.|.+  .+-|..+++|+|||+++.-+|+.++|++|.++|+++...-    ..++..||..|-
T Consensus        59 Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyR  126 (175)
T KOG4555|consen   59 LDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYR  126 (175)
T ss_pred             hHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHH
Confidence            7888888888  7789999999999999999999999999999999997544    456777776553

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=98.04  E-value=2.3e-05  Score=65.53  Aligned_cols=62  Identities=18%  Similarity=0.060  Sum_probs=43.5

Q ss_pred             HHHHHHHHHH--HhhhhhHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHhhh
Q psy18096         68 GILASQELLD--SLIKERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCLI  129 (131)
Q Consensus        68 y~~Ai~~~~~--~~~~~~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~~~ka~~rrg~a~~  129 (131)
                      +.+|+..|.+  +++|....+++|+|.++..+|++++|+..+.++++++|+++.+++.+|.++.
T Consensus       625 ~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~  688 (987)
T PRK09782        625 VPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQ  688 (987)
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            5666666666  6667777777777777777777777777777777777777777777776664

>PRK12370 invasion protein regulator; Provisional

Probab=98.03  E-value=2.5e-05  Score=61.60  Aligned_cols=61  Identities=23%  Similarity=0.140  Sum_probs=55.0

Q ss_pred             HHHHHHHHHH--HhhhhhHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHhh
Q psy18096         68 GILASQELLD--SLIKERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCL  128 (131)
Q Consensus        68 y~~Ai~~~~~--~~~~~~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~~~ka~~rrg~a~  128 (131)
                      |.+|+..|++  +++|..+.+++++|.++..+|++++|+..++++++++|.+..+++.++.++
T Consensus       354 ~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~  416 (553)
T PRK12370        354 YIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLWIT  416 (553)
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHH
Confidence            8899999999  889999999999999999999999999999999999999987766655443

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=98.00  E-value=9.5e-05  Score=48.37  Aligned_cols=63  Identities=19%  Similarity=0.113  Sum_probs=55.3

Q ss_pred             HHHHHHHHHH-----HhhhhhHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCH---HHHHHHHHhhhc
Q psy18096         68 GILASQELLD-----SLIKERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNI---KALQRKAKCLIL  130 (131)
Q Consensus        68 y~~Ai~~~~~-----~~~~~~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~~~---ka~~rrg~a~~~  130 (131)
                      |.+|++.++.     -..+....+.++++-+|.+.++|.+|+..+++-|+++|++.   -|+|++|.++..
T Consensus        26 Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~~   96 (142)
T PF13512_consen   26 YEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYYE   96 (142)
T ss_pred             HHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHH
Confidence            9999999987     34466678899999999999999999999999999999885   689999988753

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=97.98  E-value=4.2e-05  Score=50.83  Aligned_cols=62  Identities=11%  Similarity=0.009  Sum_probs=51.8

Q ss_pred             HHHHHHHHHH--HhhhhhHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCC--HHHHHHHHHhhh
Q psy18096         68 GILASQELLD--SLIKERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNN--IKALQRKAKCLI  129 (131)
Q Consensus        68 y~~Ai~~~~~--~~~~~~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~~--~ka~~rrg~a~~  129 (131)
                      |.+||..|..  .+++..+..+.|.|.|++++|+.+.|+..+..||..-..+  -..+-.|+++++
T Consensus        85 ~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~~~~~~~~~l~~~A~~~L  150 (157)
T PRK15363         85 WGEAIYAYGRAAQIKIDAPQAPWAAAECYLACDNVCYAIKALKAVVRICGEVSEHQILRQRAEKML  150 (157)
T ss_pred             HHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccChhHHHHHHHHHHHH
Confidence            9999999999  8889999999999999999999999999999999876222  334455565554

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=97.95  E-value=1.9e-05  Score=39.52  Aligned_cols=29  Identities=31%  Similarity=0.372  Sum_probs=24.8

Q ss_pred             HHHHHHHHHHHhCChHHHHHHHHHHHhhC
Q psy18096         86 CYNNLAQAQIKLGSLEPALMSLENVLNLD  114 (131)
Q Consensus        86 ~~~N~a~~~~kl~~~~~a~~~~~~al~~d  114 (131)
                      ++.|+|.+|.++|+|++|+..+.++|.+.
T Consensus         1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~   29 (36)
T PF13176_consen    1 ALNNLGRIYRQQGDYEKAIEYYEQALALA   29 (36)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence            57899999999999999999999966543

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=97.95  E-value=4.5e-05  Score=58.31  Aligned_cols=53  Identities=26%  Similarity=0.282  Sum_probs=49.3

Q ss_pred             HhhhhhHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHH---HHHHHHhhhc
Q psy18096         78 SLIKERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKA---LQRKAKCLIL  130 (131)
Q Consensus        78 ~~~~~~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~~~ka---~~rrg~a~~~  130 (131)
                      +.+|.....++|+|.+|.++|+|++|+..|++||+++|++..+   ||++|.+|..
T Consensus        69 ~~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~  124 (453)
T PLN03098         69 EADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAY  124 (453)
T ss_pred             cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHH
Confidence            4578999999999999999999999999999999999999965   9999999864

>smart00028 TPR Tetratricopeptide repeats

Probab=97.95  E-value=1.9e-05  Score=36.97  Aligned_cols=33  Identities=45%  Similarity=0.655  Sum_probs=30.5

Q ss_pred             HHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCC
Q psy18096         85 NCYNNLAQAQIKLGSLEPALMSLENVLNLDPNN  117 (131)
Q Consensus        85 ~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~~  117 (131)
                      .++.++|.++..++++++|+..+.++++++|++
T Consensus         2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~~   34 (34)
T smart00028        2 EALYNLGNAYLKLGDYDEALEYYEKALELDPNN   34 (34)
T ss_pred             hHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCC
Confidence            468899999999999999999999999999864

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>KOG1310|consensus

Probab=97.95  E-value=2.3e-05  Score=60.88  Aligned_cols=63  Identities=27%  Similarity=0.151  Sum_probs=55.0

Q ss_pred             HHHHHHHHHH--HhhhhhHHHHHHHHHHHHHh---CChHHHHHHHHHHHhhCCCCHHHHHHHHHhhhc
Q psy18096         68 GILASQELLD--SLIKERINCYNNLAQAQIKL---GSLEPALMSLENVLNLDPNNIKALQRKAKCLIL  130 (131)
Q Consensus        68 y~~Ai~~~~~--~~~~~~~~~~~N~a~~~~kl---~~~~~a~~~~~~al~~dp~~~ka~~rrg~a~~~  130 (131)
                      ...||..|.+  ...+...-+|.|||.+++|.   |+--.|++||..||++||...|||||.+.|+..
T Consensus       390 ~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~e  457 (758)
T KOG1310|consen  390 VSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALNE  457 (758)
T ss_pred             HHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHHHH
Confidence            5677777777  44578889999999999996   578889999999999999999999999999864

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=97.92  E-value=0.00013  Score=51.98  Aligned_cols=61  Identities=16%  Similarity=0.048  Sum_probs=52.0

Q ss_pred             HHHHHHHHHH--Hhh---hhhHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCC---HHHHHHHHHhh
Q psy18096         68 GILASQELLD--SLI---KERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNN---IKALQRKAKCL  128 (131)
Q Consensus        68 y~~Ai~~~~~--~~~---~~~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~~---~ka~~rrg~a~  128 (131)
                      |.+|+..|+.  ...   +....+..++|.+|.++++|++|+..+++.++++|++   ..++|.+|.++
T Consensus        48 y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~  116 (243)
T PRK10866         48 WKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTN  116 (243)
T ss_pred             HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhh
Confidence            9999999998  332   4455567899999999999999999999999999876   57899999874

>KOG0547|consensus

Probab=97.91  E-value=1.9e-05  Score=60.77  Aligned_cols=51  Identities=25%  Similarity=0.339  Sum_probs=44.4

Q ss_pred             HhhhhhHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHhh
Q psy18096         78 SLIKERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCL  128 (131)
Q Consensus        78 ~~~~~~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~~~ka~~rrg~a~  128 (131)
                      .++|.++.+|.-||+.++-+++|++|+.||++++++||+|+-++-..+.++
T Consensus       388 ~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~  438 (606)
T KOG0547|consen  388 DLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPENAYAYIQLCCAL  438 (606)
T ss_pred             hcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHH
Confidence            678889999999999999999999999999999999999988877776664

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=97.90  E-value=2.1e-05  Score=45.17  Aligned_cols=40  Identities=33%  Similarity=0.514  Sum_probs=37.2

Q ss_pred             HHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHhhhc
Q psy18096         91 AQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCLIL  130 (131)
Q Consensus        91 a~~~~kl~~~~~a~~~~~~al~~dp~~~ka~~rrg~a~~~  130 (131)
                      ...|++.++|++|+..+++++.++|+++.+|+.+|.++..
T Consensus         2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~   41 (73)
T PF13371_consen    2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQ   41 (73)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence            5678999999999999999999999999999999998864

>KOG1126|consensus

Probab=97.89  E-value=9.7e-06  Score=63.76  Aligned_cols=63  Identities=19%  Similarity=0.169  Sum_probs=54.5

Q ss_pred             HHHHHHHHHH--HhhhhhHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHhhhc
Q psy18096         68 GILASQELLD--SLIKERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCLIL  130 (131)
Q Consensus        68 y~~Ai~~~~~--~~~~~~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~~~ka~~rrg~a~~~  130 (131)
                      |+.|.-.|.+  ++.|.+..+..-.+..+.++|+.++|+..+++|+.+||.|+-.-|.||..+..
T Consensus       505 ~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~  569 (638)
T KOG1126|consen  505 LEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFS  569 (638)
T ss_pred             hhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHh
Confidence            5555555555  77899999999999999999999999999999999999999999999988764

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=97.89  E-value=6.1e-05  Score=60.94  Aligned_cols=62  Identities=6%  Similarity=-0.005  Sum_probs=38.7

Q ss_pred             HHHHHHHHHH--HhhhhhHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHhhh
Q psy18096         68 GILASQELLD--SLIKERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCLI  129 (131)
Q Consensus        68 y~~Ai~~~~~--~~~~~~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~~~ka~~rrg~a~~  129 (131)
                      |.+|...+..  ++.|.+..++.|+|.+..+++++++|+..++++|..+|+|..+++.+|.++.
T Consensus       102 ~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~  165 (694)
T PRK15179        102 SDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEAKSWD  165 (694)
T ss_pred             cHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHH
Confidence            6777776666  5556666666666666666666666666666666666666666666665553

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=97.88  E-value=9.8e-05  Score=50.22  Aligned_cols=62  Identities=19%  Similarity=0.228  Sum_probs=44.6

Q ss_pred             HHHHHHHHHHHh----hhhhHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHhhh
Q psy18096         68 GILASQELLDSL----IKERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCLI  129 (131)
Q Consensus        68 y~~Ai~~~~~~~----~~~~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~~~ka~~rrg~a~~  129 (131)
                      |.+|+..+.+-+    .+.....+.++|.++..+|++++|+..+++++..+|++..+++..|.++.
T Consensus       115 ~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~  180 (234)
T TIGR02521       115 YEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYY  180 (234)
T ss_pred             HHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHH
Confidence            455555555411    13345577788888888888888888888888888888888888877764

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=97.87  E-value=0.00013  Score=50.43  Aligned_cols=62  Identities=23%  Similarity=0.057  Sum_probs=52.3

Q ss_pred             HHHHHHHHHH-----HhhhhhHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCH---HHHHHHHHhhh
Q psy18096         68 GILASQELLD-----SLIKERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNI---KALQRKAKCLI  129 (131)
Q Consensus        68 y~~Ai~~~~~-----~~~~~~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~~~---ka~~rrg~a~~  129 (131)
                      |.+|++.|+.     .-.+....+...+|.++.+.|+|.+|+..+++.+...|++.   .|+|.+|.++.
T Consensus        21 y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~   90 (203)
T PF13525_consen   21 YEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYY   90 (203)
T ss_dssp             HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHH
Confidence            9999999998     23467778999999999999999999999999999998775   69999999875

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=97.87  E-value=7.7e-05  Score=62.49  Aligned_cols=62  Identities=23%  Similarity=0.198  Sum_probs=56.5

Q ss_pred             HHHHHHHHHH--HhhhhhHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHhhhc
Q psy18096         68 GILASQELLD--SLIKERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCLIL  130 (131)
Q Consensus        68 y~~Ai~~~~~--~~~~~~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~~~ka~~rrg~a~~~  130 (131)
                      |.+|+..|.+  ++.|. ..++.|+|.++.++|++++|+..+.+++.++|++..+++..|.++..
T Consensus       592 ~~eAl~~~~~AL~l~P~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~  655 (987)
T PRK09782        592 PELALNDLTRSLNIAPS-ANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWD  655 (987)
T ss_pred             HHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            7888888888  67785 88999999999999999999999999999999999999999988753

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=97.85  E-value=8.4e-05  Score=59.85  Aligned_cols=63  Identities=11%  Similarity=-0.072  Sum_probs=57.5

Q ss_pred             HHHHHHHHHH--HhhhhhHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHhhhc
Q psy18096         68 GILASQELLD--SLIKERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCLIL  130 (131)
Q Consensus        68 y~~Ai~~~~~--~~~~~~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~~~ka~~rrg~a~~~  130 (131)
                      +.+|+..+++  +++|....++.++|.++..+|++++|+..++++++++|++..+++.+|.++..
T Consensus        92 ~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~  156 (656)
T PRK15174         92 PDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVL  156 (656)
T ss_pred             HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence            8888888888  78899999999999999999999999999999999999999999999888653

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=97.84  E-value=7.1e-05  Score=60.57  Aligned_cols=63  Identities=16%  Similarity=-0.061  Sum_probs=59.2

Q ss_pred             HHHHHHHHHH--HhhhhhHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHhhhc
Q psy18096         68 GILASQELLD--SLIKERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCLIL  130 (131)
Q Consensus        68 y~~Ai~~~~~--~~~~~~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~~~ka~~rrg~a~~~  130 (131)
                      +.+|+..+++  ...|.+...++++|.|..++|+|++|+..|++++.-+|++.++|..+|.++..
T Consensus       136 ~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~  200 (694)
T PRK15179        136 IEAGRAEIELYFSGGSSSAREILLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTR  200 (694)
T ss_pred             HHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence            8888888888  77899999999999999999999999999999999999999999999999863

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=97.84  E-value=2.1e-05  Score=38.88  Aligned_cols=27  Identities=33%  Similarity=0.490  Sum_probs=20.2

Q ss_pred             HhhhhhHHHHHHHHHHHHHhCChHHHH
Q psy18096         78 SLIKERINCYNNLAQAQIKLGSLEPAL  104 (131)
Q Consensus        78 ~~~~~~~~~~~N~a~~~~kl~~~~~a~  104 (131)
                      +++|.++.+|+|+|.+|...|++++|+
T Consensus         7 e~~P~n~~a~~nla~~~~~~g~~~~A~   33 (34)
T PF13431_consen    7 ELNPNNAEAYNNLANLYLNQGDYEEAI   33 (34)
T ss_pred             HHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence            456777777777777777777777775

>KOG1155|consensus

Probab=97.81  E-value=7e-05  Score=57.32  Aligned_cols=63  Identities=10%  Similarity=0.176  Sum_probs=60.0

Q ss_pred             HHHHHHHHHH--HhhhhhHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHhhhc
Q psy18096         68 GILASQELLD--SLIKERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCLIL  130 (131)
Q Consensus        68 y~~Ai~~~~~--~~~~~~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~~~ka~~rrg~a~~~  130 (131)
                      .++||.+|.+  .++|....+|.=++.=|+.|++-..||..+..|+.++|.+-+|||-.|++|..
T Consensus       346 HEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYei  410 (559)
T KOG1155|consen  346 HEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEI  410 (559)
T ss_pred             HHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHH
Confidence            7899999999  88999999999999999999999999999999999999999999999999853

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=97.80  E-value=5.2e-05  Score=44.11  Aligned_cols=49  Identities=31%  Similarity=0.562  Sum_probs=39.8

Q ss_pred             hhhHHHHHHHHHHHHHhCChHHHHHHHHHHHhhC-------CCCHHHHHHHHHhhh
Q psy18096         81 KERINCYNNLAQAQIKLGSLEPALMSLENVLNLD-------PNNIKALQRKAKCLI  129 (131)
Q Consensus        81 ~~~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~d-------p~~~ka~~rrg~a~~  129 (131)
                      |....+++|+|.+|..+|+|++|+..+++++.+-       |.-+.++++.|.++.
T Consensus         2 ~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~   57 (78)
T PF13424_consen    2 PDTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYY   57 (78)
T ss_dssp             HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence            5678899999999999999999999999999762       223677888887764

...

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=97.79  E-value=5.4e-05  Score=42.75  Aligned_cols=36  Identities=31%  Similarity=0.469  Sum_probs=34.0

Q ss_pred             HHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHhhhc
Q psy18096         95 IKLGSLEPALMSLENVLNLDPNNIKALQRKAKCLIL  130 (131)
Q Consensus        95 ~kl~~~~~a~~~~~~al~~dp~~~ka~~rrg~a~~~  130 (131)
                      ++.|+|++|+..+++++..+|+|..+++..|.+++.
T Consensus         2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~   37 (68)
T PF14559_consen    2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLK   37 (68)
T ss_dssp             HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHH
T ss_pred             hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence            678999999999999999999999999999999875

...

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=97.77  E-value=6.6e-05  Score=36.20  Aligned_cols=32  Identities=22%  Similarity=0.400  Sum_probs=30.0

Q ss_pred             HHHHHHHHHHHhCChHHHHHHHHHHHhhCCCC
Q psy18096         86 CYNNLAQAQIKLGSLEPALMSLENVLNLDPNN  117 (131)
Q Consensus        86 ~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~~  117 (131)
                      ++.++|.|+.++|++++|+..+++++..-|++
T Consensus         2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s   33 (33)
T PF13174_consen    2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPDS   33 (33)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence            57899999999999999999999999999975

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=97.74  E-value=0.00015  Score=41.74  Aligned_cols=44  Identities=34%  Similarity=0.410  Sum_probs=41.2

Q ss_pred             HHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHhhh
Q psy18096         86 CYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCLI  129 (131)
Q Consensus        86 ~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~~~ka~~rrg~a~~  129 (131)
                      ++.++|.++...|++++|+..+.++++..|++..+++..|.++.
T Consensus         2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~   45 (100)
T cd00189           2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYY   45 (100)
T ss_pred             HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence            57899999999999999999999999999999999999998875

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=97.73  E-value=4.2e-05  Score=37.82  Aligned_cols=24  Identities=25%  Similarity=0.423  Sum_probs=22.1

Q ss_pred             HHHHHhhCCCCHHHHHHHHHhhhc
Q psy18096        107 LENVLNLDPNNIKALQRKAKCLIL  130 (131)
Q Consensus       107 ~~~al~~dp~~~ka~~rrg~a~~~  130 (131)
                      |++||+++|+|+.+|++.|.+|..
T Consensus         2 y~kAie~~P~n~~a~~nla~~~~~   25 (34)
T PF13431_consen    2 YKKAIELNPNNAEAYNNLANLYLN   25 (34)
T ss_pred             hHHHHHHCCCCHHHHHHHHHHHHH
Confidence            789999999999999999998863

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=97.70  E-value=0.0002  Score=57.68  Aligned_cols=58  Identities=21%  Similarity=0.204  Sum_probs=29.5

Q ss_pred             HHHHHHH--HhhhhhHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHhh
Q psy18096         71 ASQELLD--SLIKERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCL  128 (131)
Q Consensus        71 Ai~~~~~--~~~~~~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~~~ka~~rrg~a~  128 (131)
                      |+..|++  ++.|....++.++|.++.++|++++|+..++++++++|++..+++..|.++
T Consensus       269 A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l  328 (656)
T PRK15174        269 AAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARAL  328 (656)
T ss_pred             HHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            4444444  444445555555555555555555555555555555555555555544444

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=97.66  E-value=0.00023  Score=58.26  Aligned_cols=63  Identities=16%  Similarity=-0.034  Sum_probs=58.3

Q ss_pred             HHHHHHHHHH--HhhhhhHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHhhhc
Q psy18096         68 GILASQELLD--SLIKERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCLIL  130 (131)
Q Consensus        68 y~~Ai~~~~~--~~~~~~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~~~ka~~rrg~a~~~  130 (131)
                      +.+|+..+++  ...|.+..++.++|.++..+|++++|+..+++++.++|++...++-+|.+++.
T Consensus       375 ~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~  439 (765)
T PRK10049        375 LPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALD  439 (765)
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHH
Confidence            8999999998  77899999999999999999999999999999999999999999988887653

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=97.65  E-value=0.00021  Score=50.91  Aligned_cols=63  Identities=24%  Similarity=0.211  Sum_probs=59.2

Q ss_pred             HHHHHHHHHH--HhhhhhHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHhhhc
Q psy18096         68 GILASQELLD--SLIKERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCLIL  130 (131)
Q Consensus        68 y~~Ai~~~~~--~~~~~~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~~~ka~~rrg~a~~~  130 (131)
                      |.+|+..+.+  .+.|....+|+-++.+|.++|++++|...+.+++++.|++..++-+.|..+..
T Consensus       116 ~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L  180 (257)
T COG5010         116 FGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLL  180 (257)
T ss_pred             hHHHHHHHHHHhccCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHH
Confidence            9999999999  88999999999999999999999999999999999999999999888876653

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=97.65  E-value=0.00032  Score=47.61  Aligned_cols=63  Identities=19%  Similarity=0.155  Sum_probs=50.2

Q ss_pred             HHHHHHHHHH--HhhhhhHHHHHHHHHHHHHhC----------ChHHHHHHHHHHHhhCCCCHHHHHHHHHhhhc
Q psy18096         68 GILASQELLD--SLIKERINCYNNLAQAQIKLG----------SLEPALMSLENVLNLDPNNIKALQRKAKCLIL  130 (131)
Q Consensus        68 y~~Ai~~~~~--~~~~~~~~~~~N~a~~~~kl~----------~~~~a~~~~~~al~~dp~~~ka~~rrg~a~~~  130 (131)
                      |+.|.+.+..  ..+|..+..++|-+.+++.+-          .+++|+.-+++||.++|+...|++..|.||..
T Consensus         7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts   81 (186)
T PF06552_consen    7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTS   81 (186)
T ss_dssp             HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHH
Confidence            5667766666  678999999999999999873          46788999999999999999999999999864

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=97.63  E-value=0.00012  Score=56.14  Aligned_cols=63  Identities=25%  Similarity=0.138  Sum_probs=59.0

Q ss_pred             HHHHHHHHHH--HhhhhhHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHhhhc
Q psy18096         68 GILASQELLD--SLIKERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCLIL  130 (131)
Q Consensus        68 y~~Ai~~~~~--~~~~~~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~~~ka~~rrg~a~~~  130 (131)
                      +++|++.+.+  .++|....+..|+|.+++++|++.+|+...+..+.-+|+|+-.|...++||..
T Consensus       356 ~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~  420 (484)
T COG4783         356 AKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAE  420 (484)
T ss_pred             hHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHH
Confidence            8888888888  78899999999999999999999999999999999999999999999999854

>KOG2076|consensus

Probab=97.63  E-value=0.00018  Score=58.66  Aligned_cols=62  Identities=26%  Similarity=0.178  Sum_probs=53.4

Q ss_pred             HHHHHHHHHH---HhhhhhHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHhhh
Q psy18096         68 GILASQELLD---SLIKERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCLI  129 (131)
Q Consensus        68 y~~Ai~~~~~---~~~~~~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~~~ka~~rrg~a~~  129 (131)
                      |+.|++++..   .-.-.+..+|.++|.||+.+|.+++|+..+.+||.++|+|..+..+.+..+.
T Consensus       430 ~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~  494 (895)
T KOG2076|consen  430 YKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQ  494 (895)
T ss_pred             HHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHH
Confidence            9999999988   1112246799999999999999999999999999999999999888877654

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=97.62  E-value=0.00028  Score=60.18  Aligned_cols=61  Identities=15%  Similarity=0.098  Sum_probs=55.9

Q ss_pred             HHHHHHHHHH--HhhhhhHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHhh
Q psy18096         68 GILASQELLD--SLIKERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCL  128 (131)
Q Consensus        68 y~~Ai~~~~~--~~~~~~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~~~ka~~rrg~a~  128 (131)
                      |.+|+..|.+  .++|....++.++|.++..+|++++|+..++++++++|++..++...+..+
T Consensus       367 ~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~  429 (1157)
T PRK11447        367 LAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLY  429 (1157)
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            8889999988  778889999999999999999999999999999999999999987776654

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=97.59  E-value=0.00045  Score=49.72  Aligned_cols=62  Identities=27%  Similarity=0.241  Sum_probs=49.1

Q ss_pred             HHHHHHHHHH--Hhh--hhhHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHhhh
Q psy18096         68 GILASQELLD--SLI--KERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCLI  129 (131)
Q Consensus        68 y~~Ai~~~~~--~~~--~~~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~~~ka~~rrg~a~~  129 (131)
                      |.++...++.  ...  +....+|.-+|.++.+.|++++|+.++.++|+++|+|..++...+..++
T Consensus       126 ~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li  191 (280)
T PF13429_consen  126 YDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPDARNALAWLLI  191 (280)
T ss_dssp             HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence            6777777666  222  4677889999999999999999999999999999999999888887765

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=97.54  E-value=0.00043  Score=59.06  Aligned_cols=61  Identities=16%  Similarity=0.047  Sum_probs=56.8

Q ss_pred             HHHHHHHHHH--HhhhhhHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHhh
Q psy18096         68 GILASQELLD--SLIKERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCL  128 (131)
Q Consensus        68 y~~Ai~~~~~--~~~~~~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~~~ka~~rrg~a~  128 (131)
                      |.+|+..|++  ++.|....++.++|.+|.++|++++|+..++++++++|++..++|..|..+
T Consensus       477 ~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l  539 (1157)
T PRK11447        477 WAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDPEQVYAYGLYL  539 (1157)
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence            8999999999  788999999999999999999999999999999999999999998877654

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=97.54  E-value=0.00027  Score=49.73  Aligned_cols=62  Identities=26%  Similarity=0.229  Sum_probs=50.3

Q ss_pred             HHHHHHHHHH----HhhhhhHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHhhh
Q psy18096         68 GILASQELLD----SLIKERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCLI  129 (131)
Q Consensus        68 y~~Ai~~~~~----~~~~~~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~~~ka~~rrg~a~~  129 (131)
                      |.+|...|+.    -.-+.....|-|++.|-+++|+++.|..++.++|++||++.-+....++-+.
T Consensus       119 ~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~  184 (250)
T COG3063         119 PEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHY  184 (250)
T ss_pred             hHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHH
Confidence            6666666666    2235567789999999999999999999999999999999887777666554

>KOG1128|consensus

Probab=97.54  E-value=0.00022  Score=57.08  Aligned_cols=63  Identities=17%  Similarity=0.230  Sum_probs=59.0

Q ss_pred             HHHHHHHHHH--HhhhhhHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHhhhc
Q psy18096         68 GILASQELLD--SLIKERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCLIL  130 (131)
Q Consensus        68 y~~Ai~~~~~--~~~~~~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~~~ka~~rrg~a~~~  130 (131)
                      |++|.++++.  ++.|.....|++++.|.++++++..|..+|...+.++|+|..+|-+-+.+|+.
T Consensus       501 fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~  565 (777)
T KOG1128|consen  501 FSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIR  565 (777)
T ss_pred             HHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHH
Confidence            8888888888  88999999999999999999999999999999999999999999999988863

>KOG1155|consensus

Probab=97.53  E-value=0.0004  Score=53.34  Aligned_cols=52  Identities=25%  Similarity=0.208  Sum_probs=48.6

Q ss_pred             HhhhhhHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHhhh
Q psy18096         78 SLIKERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCLI  129 (131)
Q Consensus        78 ~~~~~~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~~~ka~~rrg~a~~  129 (131)
                      ++.|....+|.-+|.||.|+++.++||.++.+|+.....+.-||+|.|++|-
T Consensus       426 ~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye  477 (559)
T KOG1155|consen  426 ELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYE  477 (559)
T ss_pred             hcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHH
Confidence            5679999999999999999999999999999999999999999999999874

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=97.53  E-value=0.00036  Score=41.23  Aligned_cols=43  Identities=28%  Similarity=0.196  Sum_probs=36.4

Q ss_pred             HHHHHHHHHH-HhhhhhHHHHHHHHHHHHHhCChHHHHHHHHHH
Q psy18096         68 GILASQELLD-SLIKERINCYNNLAQAQIKLGSLEPALMSLENV  110 (131)
Q Consensus        68 y~~Ai~~~~~-~~~~~~~~~~~N~a~~~~kl~~~~~a~~~~~~a  110 (131)
                      |.+|+.++++ +..+....+..-+|.|++++|+|++|+..+.++
T Consensus        41 y~~A~~~~~~~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~l~~~   84 (84)
T PF12895_consen   41 YEEAIELLQKLKLDPSNPDIHYLLARCLLKLGKYEEAIKALEKA   84 (84)
T ss_dssp             HHHHHHHHHCHTHHHCHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHhcC
Confidence            9999999987 566667777778899999999999999998875

>KOG0624|consensus

Probab=97.51  E-value=0.00032  Score=52.30  Aligned_cols=63  Identities=19%  Similarity=0.139  Sum_probs=47.5

Q ss_pred             HHHHHHHHHH--HhhhhhHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHhhhc
Q psy18096         68 GILASQELLD--SLIKERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCLIL  130 (131)
Q Consensus        68 y~~Ai~~~~~--~~~~~~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~~~ka~~rrg~a~~~  130 (131)
                      |..|+..|..  +.+|.+-.+++.||.+|+-||+-.-|+.|.++||++.|+-.-|-..||..++.
T Consensus        54 ~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK  118 (504)
T KOG0624|consen   54 LSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLK  118 (504)
T ss_pred             HHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhhh
Confidence            7777777766  67777777777777777777777777777777777777777777777776653

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=97.49  E-value=0.00065  Score=41.93  Aligned_cols=53  Identities=21%  Similarity=0.191  Sum_probs=46.2

Q ss_pred             HHHHHHHHHH--Hhhhh---hHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHH
Q psy18096         68 GILASQELLD--SLIKE---RINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKA  120 (131)
Q Consensus        68 y~~Ai~~~~~--~~~~~---~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~~~ka  120 (131)
                      |.+|+..|..  ...|.   ...++.++|.++.+++++++|+..+++++...|++..+
T Consensus        55 ~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~  112 (119)
T TIGR02795        55 YADAAKAFLAVVKKYPKSPKAPDALLKLGMSLQELGDKEKAKATLQQVIKRYPGSSAA  112 (119)
T ss_pred             HHHHHHHHHHHHHHCCCCCcccHHHHHHHHHHHHhCChHHHHHHHHHHHHHCcCChhH
Confidence            8999999998  44443   46789999999999999999999999999999998764

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=97.48  E-value=0.0005  Score=55.52  Aligned_cols=51  Identities=20%  Similarity=0.212  Sum_probs=37.6

Q ss_pred             hhhhhHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHhhh
Q psy18096         79 LIKERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCLI  129 (131)
Q Consensus        79 ~~~~~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~~~ka~~rrg~a~~  129 (131)
                      +.|....++.++|.++..+|++++|+..++++++++|.+..+++..+.++.
T Consensus       832 ~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~  882 (899)
T TIGR02917       832 LAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALALL  882 (899)
T ss_pred             hCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHH
Confidence            345555666677777777788888888888888888777777777777765

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=97.47  E-value=0.00025  Score=51.83  Aligned_cols=62  Identities=26%  Similarity=0.250  Sum_probs=49.7

Q ss_pred             HHHHHHHHHH--HhhhhhHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHhhh
Q psy18096         68 GILASQELLD--SLIKERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCLI  129 (131)
Q Consensus        68 y~~Ai~~~~~--~~~~~~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~~~ka~~rrg~a~~  129 (131)
                      |++|.-+|+.  +..+..+..++.+|.|++.+|+|++|.....++++.||+++.++.+...+..
T Consensus       183 ~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~  246 (290)
T PF04733_consen  183 YQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSL  246 (290)
T ss_dssp             CCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHH
Confidence            6777777776  3335677888999999999999999999999999999999999999876643

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=97.47  E-value=0.00084  Score=47.32  Aligned_cols=59  Identities=24%  Similarity=0.068  Sum_probs=53.4

Q ss_pred             HHHHHHHHHH--HhhhhhHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHH
Q psy18096         68 GILASQELLD--SLIKERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAK  126 (131)
Q Consensus        68 y~~Ai~~~~~--~~~~~~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~~~ka~~rrg~  126 (131)
                      +..|-.-+++  +.+|.+..+|.-||..|.++|+.+.|-+.+.+||+++|+|...+.+-|.
T Consensus        51 ~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~  111 (250)
T COG3063          51 YAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGA  111 (250)
T ss_pred             HHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhH
Confidence            7888888888  8899999999999999999999999999999999999999887776664

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=97.46  E-value=0.00061  Score=55.03  Aligned_cols=61  Identities=25%  Similarity=0.263  Sum_probs=30.6

Q ss_pred             HHHHHHHHHH--HhhhhhHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHhh
Q psy18096         68 GILASQELLD--SLIKERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCL  128 (131)
Q Consensus        68 y~~Ai~~~~~--~~~~~~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~~~ka~~rrg~a~  128 (131)
                      |.+|+..|++  +..|....++..+|.++...|+|++|+..++++++.+|.+..+++.+|.++
T Consensus       141 ~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~  203 (899)
T TIGR02917       141 LELAQKSYEQALAIDPRSLYAKLGLAQLALAENRFDEARALIDEVLTADPGNVDALLLKGDLL  203 (899)
T ss_pred             HHHHHHHHHHHHhcCCCChhhHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence            5555555554  334444444555555555555555555555555555555555555544443

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=97.43  E-value=0.0011  Score=47.79  Aligned_cols=62  Identities=15%  Similarity=0.061  Sum_probs=51.8

Q ss_pred             HHHHHHHHHH--Hhhhhh---HHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCC---CHHHHHHHHHhhh
Q psy18096         68 GILASQELLD--SLIKER---INCYNNLAQAQIKLGSLEPALMSLENVLNLDPN---NIKALQRKAKCLI  129 (131)
Q Consensus        68 y~~Ai~~~~~--~~~~~~---~~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~---~~ka~~rrg~a~~  129 (131)
                      |.+|+..|..  ...|..   ..+++-+|.+|...|+|++|+..+.+++...|+   ...+||+.|.++.
T Consensus       159 y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~  228 (263)
T PRK10803        159 QDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQ  228 (263)
T ss_pred             HHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHH
Confidence            8888888887  444443   578899999999999999999999999988876   5788998888774

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=97.42  E-value=0.0011  Score=49.51  Aligned_cols=62  Identities=23%  Similarity=0.184  Sum_probs=43.4

Q ss_pred             HHHHHHHHHH--Hhhhh-----hHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHhhh
Q psy18096         68 GILASQELLD--SLIKE-----RINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCLI  129 (131)
Q Consensus        68 y~~Ai~~~~~--~~~~~-----~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~~~ka~~rrg~a~~  129 (131)
                      |.+|+..+..  ...+.     ...++.++|.++.+.|++++|+..++++++.+|++..+++..|.++.
T Consensus       157 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  225 (389)
T PRK11788        157 WQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLAL  225 (389)
T ss_pred             HHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHH
Confidence            6666666665  22221     23456778888888888888888888888888888888877777664

>KOG1125|consensus

Probab=97.39  E-value=0.00017  Score=56.23  Aligned_cols=49  Identities=18%  Similarity=0.177  Sum_probs=47.1

Q ss_pred             HHHHHHHHHH--HhhhhhHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCC
Q psy18096         68 GILASQELLD--SLIKERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPN  116 (131)
Q Consensus        68 y~~Ai~~~~~--~~~~~~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~  116 (131)
                      +.+||..|++  ++.|.++.+.+|+|.+++.+|.|++|+.++-.||.+.++
T Consensus       480 s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~k  530 (579)
T KOG1125|consen  480 SEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRK  530 (579)
T ss_pred             cHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhc
Confidence            8999999999  999999999999999999999999999999999998865

>KOG1173|consensus

Probab=97.39  E-value=0.00048  Score=53.84  Aligned_cols=51  Identities=22%  Similarity=0.199  Sum_probs=47.9

Q ss_pred             HHHHHHHHHH--HhhhhhHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCH
Q psy18096         68 GILASQELLD--SLIKERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNI  118 (131)
Q Consensus        68 y~~Ai~~~~~--~~~~~~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~~~  118 (131)
                      |.+||..|++  .+.|..+..|.-.|.+|..+|+++.|++.+.++|.++|+|.
T Consensus       471 ~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~  523 (611)
T KOG1173|consen  471 YEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNI  523 (611)
T ss_pred             HHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccH
Confidence            9999999999  77899999999999999999999999999999999999994

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=97.37  E-value=0.0018  Score=45.17  Aligned_cols=44  Identities=23%  Similarity=0.258  Sum_probs=38.9

Q ss_pred             HHHHHHHHHHhCChHHHHHHHHHHHhhCCC---CHHHHHHHHHhhhc
Q psy18096         87 YNNLAQAQIKLGSLEPALMSLENVLNLDPN---NIKALQRKAKCLIL  130 (131)
Q Consensus        87 ~~N~a~~~~kl~~~~~a~~~~~~al~~dp~---~~ka~~rrg~a~~~  130 (131)
                      ..++|.+|++.|++.+|+..+.+++...|+   ..++++++|.++..
T Consensus       169 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~  215 (235)
T TIGR03302       169 ELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLK  215 (235)
T ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHH
Confidence            358899999999999999999999999765   46999999999864

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=97.35  E-value=0.001  Score=54.49  Aligned_cols=59  Identities=15%  Similarity=0.016  Sum_probs=26.6

Q ss_pred             HHHHHHHHHH--HhhhhhHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHh
Q psy18096         68 GILASQELLD--SLIKERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKC  127 (131)
Q Consensus        68 y~~Ai~~~~~--~~~~~~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~~~ka~~rrg~a  127 (131)
                      +.+|+..+.+  +..|.... +.++|.++..+|++.+|+..++++++++|++..+++..|.+
T Consensus        99 ~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~  159 (765)
T PRK10049         99 YDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQA  159 (765)
T ss_pred             HHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            3444444443  33344444 44444444444444444444444444444444444444443

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=97.34  E-value=0.00061  Score=34.41  Aligned_cols=31  Identities=39%  Similarity=0.425  Sum_probs=27.0

Q ss_pred             HHHHHHHHHHHHHhCChHHHHHHHHHHHhhC
Q psy18096         84 INCYNNLAQAQIKLGSLEPALMSLENVLNLD  114 (131)
Q Consensus        84 ~~~~~N~a~~~~kl~~~~~a~~~~~~al~~d  114 (131)
                      +.+++|+|.+|..+|+|++|+..+.+++.+-
T Consensus         2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~~   32 (42)
T PF13374_consen    2 ASALNNLANAYRAQGRYEEALELLEEALEIR   32 (42)
T ss_dssp             HHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhhcchhhHHHHHHHHHH
Confidence            4678999999999999999999999999753

>KOG1173|consensus

Probab=97.33  E-value=0.00088  Score=52.45  Aligned_cols=63  Identities=22%  Similarity=0.123  Sum_probs=52.4

Q ss_pred             HHHHHHHHHHHh------h---hhhHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHhhhc
Q psy18096         68 GILASQELLDSL------I---KERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCLIL  130 (131)
Q Consensus        68 y~~Ai~~~~~~~------~---~~~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~~~ka~~rrg~a~~~  130 (131)
                      |.+|+.++...+      .   +.-.+.++|+|.++.|++.|.+||..++++|.+.|+++..+---|-+|..
T Consensus       430 y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~l  501 (611)
T KOG1173|consen  430 YPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHL  501 (611)
T ss_pred             hHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHH
Confidence            888888887721      1   12346799999999999999999999999999999999998887777653

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=97.31  E-value=0.0015  Score=42.44  Aligned_cols=63  Identities=25%  Similarity=0.235  Sum_probs=50.0

Q ss_pred             HHHHHHHHHH-----------------HhhhhhHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHhhhc
Q psy18096         68 GILASQELLD-----------------SLIKERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCLIL  130 (131)
Q Consensus        68 y~~Ai~~~~~-----------------~~~~~~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~~~ka~~rrg~a~~~  130 (131)
                      +.+|+.+|..                 .+......+...++..+...|++++|+..|.+++.+||-+..+|...-++|..
T Consensus        29 ~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~  108 (146)
T PF03704_consen   29 LEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAA  108 (146)
T ss_dssp             HHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence            6777777765                 34567778888999999999999999999999999999999999888777753

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=97.26  E-value=0.0017  Score=48.50  Aligned_cols=61  Identities=20%  Similarity=0.220  Sum_probs=34.3

Q ss_pred             HHHHHHHHHH--HhhhhhHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCH-HHHHHHHHhh
Q psy18096         68 GILASQELLD--SLIKERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNI-KALQRKAKCL  128 (131)
Q Consensus        68 y~~Ai~~~~~--~~~~~~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~~~-ka~~rrg~a~  128 (131)
                      +.+|+..+++  +..|....++.++|.++.+.|++++|+..++++++.+|.+. .++...+.++
T Consensus       196 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~  259 (389)
T PRK11788        196 LDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECY  259 (389)
T ss_pred             HHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHH
Confidence            5556666555  34455555666666666666666666666666666665542 3333444433

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=97.20  E-value=0.0012  Score=47.42  Aligned_cols=50  Identities=32%  Similarity=0.395  Sum_probs=42.9

Q ss_pred             hhhHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHhhhc
Q psy18096         81 KERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCLIL  130 (131)
Q Consensus        81 ~~~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~~~ka~~rrg~a~~~  130 (131)
                      +..+.++..+|.++..+|++++|+..+.+++..+|+|+..+...|.++..
T Consensus       211 ~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~  260 (280)
T PF13429_consen  211 PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQ  260 (280)
T ss_dssp             HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT-
T ss_pred             cCHHHHHHHHHHHhcccccccccccccccccccccccccccccccccccc
Confidence            55667888999999999999999999999999999999999999988753

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=97.19  E-value=0.002  Score=49.00  Aligned_cols=62  Identities=19%  Similarity=0.185  Sum_probs=51.7

Q ss_pred             HHHHHHHHH--HhhhhhHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHhhhc
Q psy18096         69 ILASQELLD--SLIKERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCLIL  130 (131)
Q Consensus        69 ~~Ai~~~~~--~~~~~~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~~~ka~~rrg~a~~~  130 (131)
                      .+||+++.+  ...|....++.-.|..+++.++++.|+..+.++.++.|++.++|+..+++|+.
T Consensus       217 ~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~  280 (395)
T PF09295_consen  217 VEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYELALEIAKKAVELSPSEFETWYQLAECYIQ  280 (395)
T ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHh
Confidence            444444444  33466778888899999999999999999999999999999999999999975

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=97.14  E-value=0.002  Score=43.23  Aligned_cols=53  Identities=15%  Similarity=0.066  Sum_probs=44.7

Q ss_pred             HhhhhhHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCC---HHHHHHHHHhhhc
Q psy18096         78 SLIKERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNN---IKALQRKAKCLIL  130 (131)
Q Consensus        78 ~~~~~~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~~---~ka~~rrg~a~~~  130 (131)
                      ...+....++.|+|..+...|++++|+..+.+++.++|+.   ..+++..|.++..
T Consensus        29 ~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~   84 (172)
T PRK02603         29 NKKAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYAS   84 (172)
T ss_pred             ccHhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHH
Confidence            3456777889999999999999999999999999987653   4688888888753

>KOG1126|consensus

Probab=97.11  E-value=0.00084  Score=53.19  Aligned_cols=61  Identities=16%  Similarity=0.164  Sum_probs=47.0

Q ss_pred             HHHHHHHHHH--HhhhhhHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHhh
Q psy18096         68 GILASQELLD--SLIKERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCL  128 (131)
Q Consensus        68 y~~Ai~~~~~--~~~~~~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~~~ka~~rrg~a~  128 (131)
                      |.+|..+|+.  ..+|..-.+|+-++.+|+|+++++.|.-.+.+|++++|.|.-.+..-|..+
T Consensus       471 ~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~  533 (638)
T KOG1126|consen  471 FDKAMKSFRKALGVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQ  533 (638)
T ss_pred             HHhHHHHHHhhhcCCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHH
Confidence            4455555554  456777888999999999999999999999999999998877666666554

>KOG3364|consensus

Probab=97.03  E-value=0.0022  Score=41.68  Aligned_cols=55  Identities=25%  Similarity=0.305  Sum_probs=44.2

Q ss_pred             HHHHHHHHHH----HhhhhhHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHH
Q psy18096         68 GILASQELLD----SLIKERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQ  122 (131)
Q Consensus        68 y~~Ai~~~~~----~~~~~~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~~~ka~~  122 (131)
                      =++.|.+++.    +-......+.+-+|..+.++++|+.+++.++..|+.+|+|..|.-
T Consensus        51 v~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~  109 (149)
T KOG3364|consen   51 VQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALE  109 (149)
T ss_pred             HHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHH
Confidence            4566777766    222345567788999999999999999999999999999987753

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=97.00  E-value=0.0039  Score=42.40  Aligned_cols=57  Identities=23%  Similarity=0.191  Sum_probs=44.8

Q ss_pred             HHHHHHHHHH--HhhhhhHHHHHHHHHHHHHhCC-----------hHHHHHHHHHHHhhCCCCHHHHHHHHH
Q psy18096         68 GILASQELLD--SLIKERINCYNNLAQAQIKLGS-----------LEPALMSLENVLNLDPNNIKALQRKAK  126 (131)
Q Consensus        68 y~~Ai~~~~~--~~~~~~~~~~~N~a~~~~kl~~-----------~~~a~~~~~~al~~dp~~~ka~~rrg~  126 (131)
                      |++||.-|+.  .++|....++.|++.+|+.++.           |++|..++.+|...||+|.  +||++.
T Consensus        51 iedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne--~Y~ksL  120 (186)
T PF06552_consen   51 IEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNNE--LYRKSL  120 (186)
T ss_dssp             HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT-H--HHHHHH
T ss_pred             HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCcH--HHHHHH
Confidence            7788888877  8899999999999999998753           9999999999999999985  455543

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>KOG0546|consensus

Probab=96.99  E-value=9.7e-05  Score=54.73  Aligned_cols=63  Identities=22%  Similarity=0.165  Sum_probs=54.3

Q ss_pred             HHHHHHHHHH----------H----hhhhhHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHhhhc
Q psy18096         68 GILASQELLD----------S----LIKERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCLIL  130 (131)
Q Consensus        68 y~~Ai~~~~~----------~----~~~~~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~~~ka~~rrg~a~~~  130 (131)
                      |.++.++++.          +    +.......+.|.+.|-+|++.|..|+..|..++..|++..||+|||++++.+
T Consensus       245 ~~k~~r~~~~~s~~~~~e~~~~~~~~~~~r~~~~~n~~~~~lk~~~~~~a~~~~~~~~~~~~s~tka~~Rr~~~~~~  321 (372)
T KOG0546|consen  245 YRKALRYLSEQSRDREKEQENRIPPLRELRFSIRRNLAAVGLKVKGRGGARFRTNEALRDERSKTKAHYRRGQAYKL  321 (372)
T ss_pred             HHHHhhhhcccccccccccccccccccccccccccchHHhcccccCCCcceeccccccccChhhCcHHHHHHhHHHh
Confidence            7777777762          1    3455677889999999999999999999999999999999999999999865

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=96.98  E-value=0.0037  Score=52.03  Aligned_cols=50  Identities=20%  Similarity=0.133  Sum_probs=44.3

Q ss_pred             hhhHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHhhhc
Q psy18096         81 KERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCLIL  130 (131)
Q Consensus        81 ~~~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~~~ka~~rrg~a~~~  130 (131)
                      +.+.-++..+|.||-++|++++|+..++++|++||+|+-++-+.|-.|..
T Consensus       113 ~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae  162 (906)
T PRK14720        113 GENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEE  162 (906)
T ss_pred             hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHH
Confidence            33445888999999999999999999999999999999999998877653

>KOG4162|consensus

Probab=96.96  E-value=0.0033  Score=50.83  Aligned_cols=62  Identities=26%  Similarity=0.229  Sum_probs=54.4

Q ss_pred             HHHHHHHHHH--HhhhhhHHHHHHHHHHHHHhCChHHHHH--HHHHHHhhCCCCHHHHHHHHHhhh
Q psy18096         68 GILASQELLD--SLIKERINCYNNLAQAQIKLGSLEPALM--SLENVLNLDPNNIKALQRKAKCLI  129 (131)
Q Consensus        68 y~~Ai~~~~~--~~~~~~~~~~~N~a~~~~kl~~~~~a~~--~~~~al~~dp~~~ka~~rrg~a~~  129 (131)
                      +.+|...|..  .++|..+....-+|.|+++.|+..-|.+  ....++++||.|.+|||..|..+.
T Consensus       700 ~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k  765 (799)
T KOG4162|consen  700 LEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFK  765 (799)
T ss_pred             hHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Confidence            6666666666  7789999999999999999998888877  899999999999999999998764

>KOG4648|consensus

Probab=96.91  E-value=0.0026  Score=47.67  Aligned_cols=42  Identities=36%  Similarity=0.426  Sum_probs=39.2

Q ss_pred             HhhhhhHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHH
Q psy18096         78 SLIKERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIK  119 (131)
Q Consensus        78 ~~~~~~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~~~k  119 (131)
                      .++..++++|..|+.+...+|...+|..||+.||.+.|++..
T Consensus       159 aLd~~Y~KAYSRR~~AR~~Lg~~~EAKkD~E~vL~LEP~~~E  200 (536)
T KOG4648|consen  159 ALDKLYVKAYSRRMQARESLGNNMEAKKDCETVLALEPKNIE  200 (536)
T ss_pred             HhhHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHhhCcccHH
Confidence            567889999999999999999999999999999999998753

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=96.82  E-value=0.0082  Score=47.30  Aligned_cols=61  Identities=20%  Similarity=0.225  Sum_probs=52.8

Q ss_pred             HHHHHHHHHH--HhhhhhHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHhh
Q psy18096         68 GILASQELLD--SLIKERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCL  128 (131)
Q Consensus        68 y~~Ai~~~~~--~~~~~~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~~~ka~~rrg~a~  128 (131)
                      |++|++++..  ..-.+...++--+|.+++++|++++|...+...|..+|+|..-|.....++
T Consensus        20 ~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~   82 (517)
T PF12569_consen   20 YEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEAL   82 (517)
T ss_pred             HHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHH
Confidence            9999999988  445667888899999999999999999999999999999987666555554

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>PRK15095 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional

Probab=96.82  E-value=0.00052  Score=45.76  Aligned_cols=28  Identities=11%  Similarity=0.272  Sum_probs=25.9

Q ss_pred             CcchhcccCCCcEEEEEEcCCCCCCCCC
Q psy18096          1 MDYVLPLMETGEECQIEITARFGYGDKG   28 (131)
Q Consensus         1 ld~~l~~M~~gE~~~v~i~~~~ayG~~G   28 (131)
                      +|.+|..|++||+..|+|+|+.|||...
T Consensus        48 le~aL~gm~~Ge~~~v~ipp~~ayG~~d   75 (156)
T PRK15095         48 LEQQLLGLKVGDKKTFSLEPEAAFGVPS   75 (156)
T ss_pred             HHHHHcCCCCCCEEEEEEChHHhcCCCC
Confidence            4789999999999999999999999766

>PRK15331 chaperone protein SicA; Provisional

Probab=96.81  E-value=0.0044  Score=41.55  Aligned_cols=60  Identities=18%  Similarity=0.047  Sum_probs=49.3

Q ss_pred             HHHHHHHHHH--HhhhhhHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHhhh
Q psy18096         68 GILASQELLD--SLIKERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCLI  129 (131)
Q Consensus        68 y~~Ai~~~~~--~~~~~~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~~~ka~~rrg~a~~  129 (131)
                      |++||..|..  -+++..+.-+...|.||+.+|+...|+..+..|+. .|. -..+-+|+++++
T Consensus        87 y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~~A~~~f~~a~~-~~~-~~~l~~~A~~~L  148 (165)
T PRK15331         87 FQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAAKARQCFELVNE-RTE-DESLRAKALVYL  148 (165)
T ss_pred             HHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHHHHHHHHHHHHh-Ccc-hHHHHHHHHHHH
Confidence            9999999988  55566666688899999999999999999999998 455 445566777765

>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT

Probab=96.78  E-value=0.01  Score=37.91  Aligned_cols=63  Identities=22%  Similarity=0.118  Sum_probs=48.3

Q ss_pred             HHHHHHHHHH--------------HhhhhhHHHHHHHHHHHHHhCChHHHHHHHHHHHh-------hCCC----CHHHHH
Q psy18096         68 GILASQELLD--------------SLIKERINCYNNLAQAQIKLGSLEPALMSLENVLN-------LDPN----NIKALQ  122 (131)
Q Consensus        68 y~~Ai~~~~~--------------~~~~~~~~~~~N~a~~~~kl~~~~~a~~~~~~al~-------~dp~----~~ka~~  122 (131)
                      |.+|...+.+              +.+....-+|.-++.++.++|+|++++...+.+|.       ++.+    ++.+-|
T Consensus        25 ~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWIaaVf  104 (144)
T PF12968_consen   25 YEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLWIAAVF  104 (144)
T ss_dssp             HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhHHHHHH
Confidence            6666666655              44677888999999999999999999999999996       3333    467778


Q ss_pred             HHHHhhhc
Q psy18096        123 RKAKCLIL  130 (131)
Q Consensus       123 rrg~a~~~  130 (131)
                      +||.|+-.
T Consensus       105 sra~Al~~  112 (144)
T PF12968_consen  105 SRAVALEG  112 (144)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHh
Confidence            89888754

The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=96.67  E-value=0.0097  Score=39.62  Aligned_cols=49  Identities=12%  Similarity=0.049  Sum_probs=41.8

Q ss_pred             hhhHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCC---HHHHHHHHHhhh
Q psy18096         81 KERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNN---IKALQRKAKCLI  129 (131)
Q Consensus        81 ~~~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~~---~ka~~rrg~a~~  129 (131)
                      .....+++++|.++..+++|++|+..+.+++.+.|+.   .-+|+..|.++.
T Consensus        32 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~   83 (168)
T CHL00033         32 EKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHT   83 (168)
T ss_pred             hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHH
Confidence            4467889999999999999999999999999987653   458888888775

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=96.66  E-value=0.0093  Score=43.99  Aligned_cols=62  Identities=10%  Similarity=-0.055  Sum_probs=48.6

Q ss_pred             HHHHHHHHHH--HhhhhhHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCH----HHHHHHHHhhh
Q psy18096         68 GILASQELLD--SLIKERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNI----KALQRKAKCLI  129 (131)
Q Consensus        68 y~~Ai~~~~~--~~~~~~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~~~----ka~~rrg~a~~  129 (131)
                      |.+|+..+++  ++.|....++.++|.++...|++++|+..+++++..+|.+.    ..|+..|..++
T Consensus       130 ~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~  197 (355)
T cd05804         130 YDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYL  197 (355)
T ss_pred             HHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHH
Confidence            8888888888  77788888888999999999999999999999998876432    34445555543

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>PRK11906 transcriptional regulator; Provisional

Probab=96.63  E-value=0.012  Score=45.49  Aligned_cols=53  Identities=6%  Similarity=-0.098  Sum_probs=49.6

Q ss_pred             HhhhhhHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHhhhc
Q psy18096         78 SLIKERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCLIL  130 (131)
Q Consensus        78 ~~~~~~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~~~ka~~rrg~a~~~  130 (131)
                      ++++..+.++..+|.+..-.++++.|+..+++|+.++|+.+-+||..|..++.
T Consensus       332 eld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~  384 (458)
T PRK11906        332 DITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFH  384 (458)
T ss_pred             hcCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHH
Confidence            78899999999999999999999999999999999999999999999987653

>KOG1840|consensus

Probab=96.61  E-value=0.0055  Score=48.11  Aligned_cols=47  Identities=21%  Similarity=0.004  Sum_probs=40.0

Q ss_pred             HHHHHHHHHH----------HhhhhhHHHHHHHHHHHHHhCChHHHHHHHHHHHhhC
Q psy18096         68 GILASQELLD----------SLIKERINCYNNLAQAQIKLGSLEPALMSLENVLNLD  114 (131)
Q Consensus        68 y~~Ai~~~~~----------~~~~~~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~d  114 (131)
                      |.+|+.+|.+          +-.|..+..+.|+|..|.+.|+|.+|..+|++|+++-
T Consensus       257 ~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~  313 (508)
T KOG1840|consen  257 YDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIY  313 (508)
T ss_pred             HHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHH
Confidence            6666666666          4568888999999999999999999999999999864

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=96.60  E-value=0.0078  Score=47.42  Aligned_cols=46  Identities=26%  Similarity=0.261  Sum_probs=41.6

Q ss_pred             HHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHhhh
Q psy18096         84 INCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCLI  129 (131)
Q Consensus        84 ~~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~~~ka~~rrg~a~~  129 (131)
                      ..+++.+|++|..+|++++|+...++||+.+|..+..|+.+|+.|-
T Consensus       194 lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilK  239 (517)
T PF12569_consen  194 LWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILK  239 (517)
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Confidence            3466789999999999999999999999999999999999998863

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=96.56  E-value=0.034  Score=35.40  Aligned_cols=49  Identities=27%  Similarity=0.194  Sum_probs=35.9

Q ss_pred             HHHHHHHHHH----Hh-hhhhHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCC
Q psy18096         68 GILASQELLD----SL-IKERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPN  116 (131)
Q Consensus        68 y~~Ai~~~~~----~~-~~~~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~  116 (131)
                      ..+||.+|.+    .+ .+....++.++|.++..+|++++|+...++++.-.|+
T Consensus        17 ~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~   70 (120)
T PF12688_consen   17 EEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPD   70 (120)
T ss_pred             HHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC
Confidence            5677777776    11 2345567788888888888888888888888877666

>KOG0376|consensus

Probab=96.53  E-value=0.0026  Score=48.98  Aligned_cols=54  Identities=31%  Similarity=0.333  Sum_probs=50.9

Q ss_pred             HHHHHHHHHH--HhhhhhHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHH
Q psy18096         68 GILASQELLD--SLIKERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKAL  121 (131)
Q Consensus        68 y~~Ai~~~~~--~~~~~~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~~~ka~  121 (131)
                      |..|+..+.+  +++|.+..+|..+|.+.++++++.+|+.+++.+..+.|+.+++.
T Consensus        54 ~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~~~A~~~l~~~~~l~Pnd~~~~  109 (476)
T KOG0376|consen   54 FGGALHDALKAIELDPTYIKAYVRRGTAVMALGEFKKALLDLEKVKKLAPNDPDAT  109 (476)
T ss_pred             hhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHHHHHHHHHHHhhhcCcCcHHHH
Confidence            8899998888  88999999999999999999999999999999999999988764

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=96.45  E-value=0.016  Score=42.25  Aligned_cols=63  Identities=25%  Similarity=0.141  Sum_probs=48.8

Q ss_pred             HHHHHHHHHH--HhhhhhHHHHHHHHHHHHHhC---ChHHHHHHHHHHHhhCCCCHHHHHHHHHhhhc
Q psy18096         68 GILASQELLD--SLIKERINCYNNLAQAQIKLG---SLEPALMSLENVLNLDPNNIKALQRKAKCLIL  130 (131)
Q Consensus        68 y~~Ai~~~~~--~~~~~~~~~~~N~a~~~~kl~---~~~~a~~~~~~al~~dp~~~ka~~rrg~a~~~  130 (131)
                      +..|+..|.+  .+.+.++.++.-.|.++..+.   .-.++...++++|.+||+|+++++-.|.+++.
T Consensus       172 ~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~lLA~~afe  239 (287)
T COG4235         172 ASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSLLAFAAFE  239 (287)
T ss_pred             hhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHHHHHHHHH
Confidence            7777777777  777888888888888877764   35677788888888888888888888777654

>PRK14574 hmsH outer membrane protein; Provisional

Probab=96.41  E-value=0.016  Score=48.11  Aligned_cols=60  Identities=15%  Similarity=0.022  Sum_probs=37.2

Q ss_pred             HHHHHHHHHHHhhhhhH--HHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHh
Q psy18096         68 GILASQELLDSLIKERI--NCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKC  127 (131)
Q Consensus        68 y~~Ai~~~~~~~~~~~~--~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~~~ka~~rrg~a  127 (131)
                      +.+|+.++++-+++...  ..+..+|..+..+|+|++|+..++++++.+|+|+.+++-.+.+
T Consensus        84 ~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~  145 (822)
T PRK14574         84 DQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMT  145 (822)
T ss_pred             cHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Confidence            56666666653333333  3333446677777777777777777777777777777644443

>KOG0545|consensus

Probab=96.34  E-value=0.024  Score=40.72  Aligned_cols=57  Identities=19%  Similarity=0.187  Sum_probs=48.5

Q ss_pred             HHHHHHHHHH--HhhhhhHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHH
Q psy18096         68 GILASQELLD--SLIKERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRK  124 (131)
Q Consensus        68 y~~Ai~~~~~--~~~~~~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~~~ka~~rr  124 (131)
                      |-++++..+.  ...|.++++|..||.++...-+..+|.+|+.++|++||.-..+--|.
T Consensus       246 ~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasvVsrE  304 (329)
T KOG0545|consen  246 YYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASVVSRE  304 (329)
T ss_pred             HHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHHHHHH
Confidence            6666766666  66799999999999999999999999999999999999766555443

>KOG3785|consensus

Probab=96.33  E-value=0.038  Score=41.79  Aligned_cols=61  Identities=21%  Similarity=-0.015  Sum_probs=50.2

Q ss_pred             HHHHHHHHHH--HhhhhhHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHhh
Q psy18096         68 GILASQELLD--SLIKERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCL  128 (131)
Q Consensus        68 y~~Ai~~~~~--~~~~~~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~~~ka~~rrg~a~  128 (131)
                      |++||+.|++  .-.+....+-.++|+||.|++-|+-+-.....-|+--|++.=|.--++..+
T Consensus       167 YQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdStiA~NLkacn~  229 (557)
T KOG3785|consen  167 YQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDSTIAKNLKACNL  229 (557)
T ss_pred             HHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence            9999999999  445777778889999999999999998888888888898876665554433

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=96.33  E-value=0.016  Score=45.75  Aligned_cols=51  Identities=20%  Similarity=0.051  Sum_probs=36.6

Q ss_pred             HHHHHHHHHH--HhhhhhHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHH
Q psy18096         68 GILASQELLD--SLIKERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIK  119 (131)
Q Consensus        68 y~~Ai~~~~~--~~~~~~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~~~k  119 (131)
                      +.+|...+++  ++.+ ...+|..+|.++...|++++|+..+.+|+.++|.+..
T Consensus       436 ~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt  488 (517)
T PRK10153        436 TDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT  488 (517)
T ss_pred             HHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence            6777777776  5566 4567777777777777777777777777777777653

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=96.32  E-value=0.055  Score=38.78  Aligned_cols=62  Identities=19%  Similarity=0.070  Sum_probs=53.4

Q ss_pred             HHHHHHHHHH-----HhhhhhHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCC---HHHHHHHHHhhh
Q psy18096         68 GILASQELLD-----SLIKERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNN---IKALQRKAKCLI  129 (131)
Q Consensus        68 y~~Ai~~~~~-----~~~~~~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~~---~ka~~rrg~a~~  129 (131)
                      |.+|++.|+.     -..|....+...++.++.|-++|++|+...++=+.+.|++   .-++|=+|.+++
T Consensus        50 ~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~~  119 (254)
T COG4105          50 YEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSYF  119 (254)
T ss_pred             HHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHh
Confidence            9999999988     3456677889999999999999999999999999999866   467777887754

>KOG2002|consensus

Probab=96.29  E-value=0.0031  Score=52.17  Aligned_cols=111  Identities=21%  Similarity=0.085  Sum_probs=72.3

Q ss_pred             EEEcCCCCCCCCCCCCCCCCCCceEEEEEeeccccCCcc-------CcCcchhhhHHHH-HHHHHHHHHH----Hhhhhh
Q psy18096         16 IEITARFGYGDKGEPSKSIPPGAKLYYSLTLHSVLPDFD-------LAELPVEKRLDFG-GILASQELLD----SLIKER   83 (131)
Q Consensus        16 v~i~~~~ayG~~G~~~~~ip~~~~~~~~v~l~~~~~~~~-------~~~~~~~e~~~~~-y~~Ai~~~~~----~~~~~~   83 (131)
                      +..+|+..|.-.|..   |--...-.|..++.-|....+       .|-+.+.--++.+ |..||+.|+.    -.....
T Consensus       639 L~~dpkN~yAANGIg---iVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~  715 (1018)
T KOG2002|consen  639 LRNDPKNMYAANGIG---IVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNR  715 (1018)
T ss_pred             HhcCcchhhhccchh---hhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCC
Confidence            456777777777742   111111122223322332222       3333344444555 8899998888    234556


Q ss_pred             HHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHhhh
Q psy18096         84 INCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCLI  129 (131)
Q Consensus        84 ~~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~~~ka~~rrg~a~~  129 (131)
                      ..+..-+|.++...|.|.+|.+....|+.+.|.|.-..|+.|.++.
T Consensus       716 ~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~v~k  761 (1018)
T KOG2002|consen  716 SEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLALVLK  761 (1018)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHHHHHH
Confidence            7788889999999999999999999999999999888888887764

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=96.27  E-value=0.014  Score=42.99  Aligned_cols=50  Identities=20%  Similarity=0.163  Sum_probs=44.4

Q ss_pred             hhhhHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHhhh
Q psy18096         80 IKERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCLI  129 (131)
Q Consensus        80 ~~~~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~~~ka~~rrg~a~~  129 (131)
                      .+....++.++|.++..+|++++|+..++++++++|++..++...|.++.
T Consensus       110 ~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~  159 (355)
T cd05804         110 NPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLE  159 (355)
T ss_pred             CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHH
Confidence            45556677899999999999999999999999999999999888888775

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=96.25  E-value=0.035  Score=40.25  Aligned_cols=62  Identities=18%  Similarity=0.141  Sum_probs=43.8

Q ss_pred             HHHHHHHHHH-HhhhhhHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCC------CCHHHH-HHHHHhhh
Q psy18096         68 GILASQELLD-SLIKERINCYNNLAQAQIKLGSLEPALMSLENVLNLDP------NNIKAL-QRKAKCLI  129 (131)
Q Consensus        68 y~~Ai~~~~~-~~~~~~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp------~~~ka~-~rrg~a~~  129 (131)
                      |++|+++|.. +.......++.+.|.++.++++|++|+..++++....-      -+++-+ ++.+.+++
T Consensus       138 Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L  207 (282)
T PF14938_consen  138 YQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHL  207 (282)
T ss_dssp             HHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHH
Confidence            6777777766 43445667889999999999999999999999987431      134544 55565554

>PRK11906 transcriptional regulator; Provisional

Probab=96.21  E-value=0.024  Score=43.79  Aligned_cols=62  Identities=19%  Similarity=0.116  Sum_probs=52.0

Q ss_pred             HHHHHHHHHH-----HhhhhhHHHHHHHHHHHHHh---------CChHHHHHHHHHHHhhCCCCHHHHHHHHHhhh
Q psy18096         68 GILASQELLD-----SLIKERINCYNNLAQAQIKL---------GSLEPALMSLENVLNLDPNNIKALQRKAKCLI  129 (131)
Q Consensus        68 y~~Ai~~~~~-----~~~~~~~~~~~N~a~~~~kl---------~~~~~a~~~~~~al~~dp~~~ka~~rrg~a~~  129 (131)
                      -.+|+.++.+     +++|.++.+|.-+|.||+.+         ..-.+|.+..++|+++||.|+.|++..|.++.
T Consensus       274 ~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~  349 (458)
T PRK11906        274 IYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITG  349 (458)
T ss_pred             HHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence            4566666666     67899999999999999975         23567889999999999999999999999764

>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal

Probab=96.21  E-value=0.023  Score=43.63  Aligned_cols=61  Identities=15%  Similarity=0.105  Sum_probs=50.8

Q ss_pred             HHHHHHHHHH-------------HhhhhhHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHhh
Q psy18096         68 GILASQELLD-------------SLIKERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCL  128 (131)
Q Consensus        68 y~~Ai~~~~~-------------~~~~~~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~~~ka~~rrg~a~  128 (131)
                      |..|++++++             ++.....-+-.-+..||+++++.+-|+...-+.|.++|.+..-++|+|-+.
T Consensus       199 F~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~lnP~~frnHLrqAavf  272 (569)
T PF15015_consen  199 FRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINLNPSYFRNHLRQAAVF  272 (569)
T ss_pred             HHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhcCcchhhHHHHHHHHH
Confidence            7777777777             334444555668999999999999999999999999999999999988765

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=96.15  E-value=0.041  Score=35.78  Aligned_cols=61  Identities=15%  Similarity=0.047  Sum_probs=45.0

Q ss_pred             HHHHHHHHHH--Hh---hhhhHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHhhh
Q psy18096         68 GILASQELLD--SL---IKERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCLI  129 (131)
Q Consensus        68 y~~Ai~~~~~--~~---~~~~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~~~ka~~rrg~a~~  129 (131)
                      |.+|+..|+.  +.   ......+.+++|.+++.+|+|++|+...+. +.-.+-...++..+|.++.
T Consensus        64 ~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~-~~~~~~~~~~~~~~Gdi~~  129 (145)
T PF09976_consen   64 YDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEALATLQQ-IPDEAFKALAAELLGDIYL  129 (145)
T ss_pred             HHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHh-ccCcchHHHHHHHHHHHHH
Confidence            8899999988  11   234566888999999999999999999866 3333444566677777765

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=96.12  E-value=0.027  Score=40.66  Aligned_cols=53  Identities=11%  Similarity=-0.017  Sum_probs=46.0

Q ss_pred             HHHHHHHHHH--H---hhhhhHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHH
Q psy18096         68 GILASQELLD--S---LIKERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKA  120 (131)
Q Consensus        68 y~~Ai~~~~~--~---~~~~~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~~~ka  120 (131)
                      |.+|+..|..  .   -.+....++.++|.++..+|++++|+..++++++..|++.-+
T Consensus       196 ~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~a  253 (263)
T PRK10803        196 KDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDTAKAKAVYQQVIKKYPGTDGA  253 (263)
T ss_pred             HHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHH
Confidence            8899998888  2   235578899999999999999999999999999999988644

>KOG2002|consensus

Probab=96.08  E-value=0.021  Score=47.48  Aligned_cols=62  Identities=15%  Similarity=0.077  Sum_probs=49.7

Q ss_pred             HHHHHHHHHH-----HhhhhhHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCC-HHHHHHHHHhhh
Q psy18096         68 GILASQELLD-----SLIKERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNN-IKALQRKAKCLI  129 (131)
Q Consensus        68 y~~Ai~~~~~-----~~~~~~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~~-~ka~~rrg~a~~  129 (131)
                      |..+..++..     ...+..+..|+++|.+|-.+|+|++|..++-++++.+|++ +-+++..|+.++
T Consensus       286 y~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i  353 (1018)
T KOG2002|consen  286 YERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYI  353 (1018)
T ss_pred             HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHH
Confidence            4455444443     3356777789999999999999999999999999999998 888888888775

>KOG0551|consensus

Probab=96.06  E-value=0.01  Score=44.08  Aligned_cols=54  Identities=20%  Similarity=0.164  Sum_probs=48.5

Q ss_pred             HHHHHHHHHH--HhhhhhHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHH
Q psy18096         68 GILASQELLD--SLIKERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKAL  121 (131)
Q Consensus        68 y~~Ai~~~~~--~~~~~~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~~~ka~  121 (131)
                      |..||...+.  .++|...+++..-|.|++.++++++|+..|+..+++|..+-++.
T Consensus       135 yRs~l~Dcs~al~~~P~h~Ka~~R~Akc~~eLe~~~~a~nw~ee~~~~d~e~K~~~  190 (390)
T KOG0551|consen  135 YRSALNDCSAALKLKPTHLKAYIRGAKCLLELERFAEAVNWCEEGLQIDDEAKKAI  190 (390)
T ss_pred             HHHHHHHHHHHHhcCcchhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhhHHHHHHH
Confidence            8888888888  88999999999999999999999999999999999886655543

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=95.96  E-value=0.023  Score=41.42  Aligned_cols=52  Identities=25%  Similarity=0.287  Sum_probs=47.6

Q ss_pred             HhhhhhHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHhhh
Q psy18096         78 SLIKERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCLI  129 (131)
Q Consensus        78 ~~~~~~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~~~ka~~rrg~a~~  129 (131)
                      ..+|.++.-|.=+|.+|+.+|++..|...+.+|++++|+|+..+.-.|.++.
T Consensus       150 ~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~  201 (287)
T COG4235         150 QQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALY  201 (287)
T ss_pred             HhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            4578999999999999999999999999999999999999998888877764

>KOG3060|consensus

Probab=95.94  E-value=0.055  Score=38.95  Aligned_cols=48  Identities=29%  Similarity=0.396  Sum_probs=34.3

Q ss_pred             hhhHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHhh
Q psy18096         81 KERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCL  128 (131)
Q Consensus        81 ~~~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~~~ka~~rrg~a~  128 (131)
                      +....+|--+|-.|+.+++|++|.-++++++-+.|-|.--+-|.|..+
T Consensus       151 ~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~  198 (289)
T KOG3060|consen  151 MNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVL  198 (289)
T ss_pred             cCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Confidence            445567777777777788888888888888877777776665555543

>KOG2076|consensus

Probab=95.94  E-value=0.041  Score=45.46  Aligned_cols=49  Identities=14%  Similarity=0.287  Sum_probs=37.5

Q ss_pred             hhhHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHhhh
Q psy18096         81 KERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCLI  129 (131)
Q Consensus        81 ~~~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~~~ka~~rrg~a~~  129 (131)
                      |.....|.-++---.++|+|.+|+-++++||+++|.|.+-.++|+..+.
T Consensus       204 p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~  252 (895)
T KOG2076|consen  204 PKDYELWKRLADLSEQLGNINQARYCYSRAIQANPSNWELIYERSSLYQ  252 (895)
T ss_pred             CCChHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHH
Confidence            3344445555555555678999999999999999999999999988775

>KOG1129|consensus

Probab=95.88  E-value=0.015  Score=43.49  Aligned_cols=43  Identities=23%  Similarity=0.216  Sum_probs=39.7

Q ss_pred             HhhhhhHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHH
Q psy18096         78 SLIKERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKA  120 (131)
Q Consensus        78 ~~~~~~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~~~ka  120 (131)
                      +.-|..++.++-.|..|-.|+++++|++.+..|++++|.|+.|
T Consensus       284 d~fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEa  326 (478)
T KOG1129|consen  284 DSFPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLHPINVEA  326 (478)
T ss_pred             hcCCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCCcccee
Confidence            4568899999999999999999999999999999999999876

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=95.80  E-value=0.063  Score=41.64  Aligned_cols=63  Identities=19%  Similarity=0.120  Sum_probs=54.9

Q ss_pred             HHHHHHHHHH--------------HhhhhhHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHhhhc
Q psy18096         68 GILASQELLD--------------SLIKERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCLIL  130 (131)
Q Consensus        68 y~~Ai~~~~~--------------~~~~~~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~~~ka~~rrg~a~~~  130 (131)
                      |-.|+..|..              ...|.++.+..=++..+++.|+.++|++.+.+++.++|+..-.++..|++|+.
T Consensus       310 YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~  386 (484)
T COG4783         310 YGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLK  386 (484)
T ss_pred             HHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHh
Confidence            7777777655              34578888888999999999999999999999999999999889999999875

>PF12862 Apc5: Anaphase-promoting complex subunit 5

Probab=95.76  E-value=0.062  Score=32.49  Aligned_cols=47  Identities=28%  Similarity=0.206  Sum_probs=37.2

Q ss_pred             HHHHHHHHHH-------Hhh----hhhHHHHHHHHHHHHHhCChHHHHHHHHHHHhhC
Q psy18096         68 GILASQELLD-------SLI----KERINCYNNLAQAQIKLGSLEPALMSLENVLNLD  114 (131)
Q Consensus        68 y~~Ai~~~~~-------~~~----~~~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~d  114 (131)
                      |..|++.+.+       +..    .....+..|+|..+..+|++++|+..+++++.+-
T Consensus        14 y~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~A   71 (94)
T PF12862_consen   14 YSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLA   71 (94)
T ss_pred             HHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence            7777776666       111    1356678899999999999999999999999874

>KOG1128|consensus

Probab=95.73  E-value=0.015  Score=47.10  Aligned_cols=56  Identities=20%  Similarity=0.261  Sum_probs=50.8

Q ss_pred             HHHHHHHHHH--HhhhhhHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHH
Q psy18096         68 GILASQELLD--SLIKERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQR  123 (131)
Q Consensus        68 y~~Ai~~~~~--~~~~~~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~~~ka~~r  123 (131)
                      ++.|++.|..  .++|.+...|+|++.+|+++++-.+|.....+|++-+-++.+.|-+
T Consensus       535 ~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWEN  592 (777)
T KOG1128|consen  535 EQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWEN  592 (777)
T ss_pred             hHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeec
Confidence            8999999999  8899999999999999999999999999999999998777665543

>KOG1174|consensus

Probab=95.72  E-value=0.034  Score=42.73  Aligned_cols=54  Identities=19%  Similarity=0.122  Sum_probs=44.6

Q ss_pred             HHHHHHHHHH-HhhhhhHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHH
Q psy18096         68 GILASQELLD-SLIKERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKAL  121 (131)
Q Consensus        68 y~~Ai~~~~~-~~~~~~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~~~ka~  121 (131)
                      |+.+|.++++ -.+-....++.-+|...--.+++.+|++.+..||.+||+|.+++
T Consensus       454 ~~D~i~LLe~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~sl  508 (564)
T KOG1174|consen  454 TKDIIKLLEKHLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRTL  508 (564)
T ss_pred             cchHHHHHHHHHhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHHH
Confidence            6777777766 22334567888899999999999999999999999999998875

>KOG1840|consensus

Probab=95.49  E-value=0.044  Score=43.14  Aligned_cols=47  Identities=19%  Similarity=0.119  Sum_probs=38.0

Q ss_pred             HHHHHHHHHH----------HhhhhhHHHHHHHHHHHHHhCChHHHHHHHHHHHhhC
Q psy18096         68 GILASQELLD----------SLIKERINCYNNLAQAQIKLGSLEPALMSLENVLNLD  114 (131)
Q Consensus        68 y~~Ai~~~~~----------~~~~~~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~d  114 (131)
                      |++|+.+|..          +-.+..+..+.|+|.+|.++|+|++|...+.+||+..
T Consensus       341 ~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~  397 (508)
T KOG1840|consen  341 YEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQIL  397 (508)
T ss_pred             hhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHH
Confidence            5555555544          3345778899999999999999999999999999864

>KOG3060|consensus

Probab=95.48  E-value=0.082  Score=38.08  Aligned_cols=57  Identities=26%  Similarity=0.200  Sum_probs=50.6

Q ss_pred             HHHHHHHHHH--HhhhhhHHHHHHHHHHHHHhC---ChHHHHHHHHHHHhhCCCCHHHHHHH
Q psy18096         68 GILASQELLD--SLIKERINCYNNLAQAQIKLG---SLEPALMSLENVLNLDPNNIKALQRK  124 (131)
Q Consensus        68 y~~Ai~~~~~--~~~~~~~~~~~N~a~~~~kl~---~~~~a~~~~~~al~~dp~~~ka~~rr  124 (131)
                      |.+|+=+|++  -+.|.+.-+|..+|-++.-+|   ++.-|..++.++|+++|.|..+||--
T Consensus       170 f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ral~GI  231 (289)
T KOG3060|consen  170 FEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNLRALFGI  231 (289)
T ss_pred             HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHHHHHH
Confidence            8999988888  668999999999999998775   68889999999999999999998854

>KOG4814|consensus

Probab=95.41  E-value=0.089  Score=42.47  Aligned_cols=56  Identities=11%  Similarity=0.012  Sum_probs=46.1

Q ss_pred             HHHHHHHHHH--------HhhhhhHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHH
Q psy18096         68 GILASQELLD--------SLIKERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQR  123 (131)
Q Consensus        68 y~~Ai~~~~~--------~~~~~~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~~~ka~~r  123 (131)
                      |..+++.|..        +.+-..++..-|++.||+++.+.+.|++...+|=+.||.++-.-+.
T Consensus       370 Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~  433 (872)
T KOG4814|consen  370 YVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLL  433 (872)
T ss_pred             HHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHH
Confidence            7777777766        3445568999999999999999999999999999999988644433

>PRK10941 hypothetical protein; Provisional

Probab=95.41  E-value=0.087  Score=38.24  Aligned_cols=48  Identities=19%  Similarity=0.231  Sum_probs=30.5

Q ss_pred             hhHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHhhh
Q psy18096         82 ERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCLI  129 (131)
Q Consensus        82 ~~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~~~ka~~rrg~a~~  129 (131)
                      .......|+=.+|++.++|+.|+++++.+|.++|+++.-+-.||.+|.
T Consensus       179 il~Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~  226 (269)
T PRK10941        179 VIRKLLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYA  226 (269)
T ss_pred             HHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            344455666666666666666666666666666666666655665553

>KOG2003|consensus

Probab=95.34  E-value=0.011  Score=45.93  Aligned_cols=56  Identities=25%  Similarity=0.217  Sum_probs=46.9

Q ss_pred             HHHHHHHHHHHh-------hhhhHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHH
Q psy18096         68 GILASQELLDSL-------IKERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRK  124 (131)
Q Consensus        68 y~~Ai~~~~~~~-------~~~~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~~~ka~~rr  124 (131)
                      |.+||++|...+       ....+++++|.+..+.++|+|+.||..++...+-.|+-. +-++.
T Consensus       253 fskaikfyrmaldqvpsink~~rikil~nigvtfiq~gqy~dainsfdh~m~~~pn~~-a~~nl  315 (840)
T KOG2003|consen  253 FSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFIQAGQYDDAINSFDHCMEEAPNFI-AALNL  315 (840)
T ss_pred             HHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEEecccchhhHhhHHHHHHhCccHH-hhhhh
Confidence            999999998822       356789999999999999999999999999999999644 43443

>KOG1129|consensus

Probab=95.32  E-value=0.039  Score=41.27  Aligned_cols=49  Identities=8%  Similarity=0.040  Sum_probs=39.0

Q ss_pred             hhhhHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCC---CCHHHHHHHHHhh
Q psy18096         80 IKERINCYNNLAQAQIKLGSLEPALMSLENVLNLDP---NNIKALQRKAKCL  128 (131)
Q Consensus        80 ~~~~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp---~~~ka~~rrg~a~  128 (131)
                      .-.++.+|+|+++|.+--++++-++..+.+|+..-.   .-...||+.|.+.
T Consensus       354 G~~speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~va  405 (478)
T KOG1129|consen  354 GAQSPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVA  405 (478)
T ss_pred             cCCChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeE
Confidence            345778999999999999999999999999998643   3467788877653

>COG1047 SlpA FKBP-type peptidyl-prolyl cis-trans isomerases 2 [Posttranslational modification, protein turnover, chaperones]

Probab=95.32  E-value=0.0091  Score=40.37  Aligned_cols=28  Identities=29%  Similarity=0.421  Sum_probs=26.2

Q ss_pred             CcchhcccCCCcEEEEEEcCCCCCCCCC
Q psy18096          1 MDYVLPLMETGEECQIEITARFGYGDKG   28 (131)
Q Consensus         1 ld~~l~~M~~gE~~~v~i~~~~ayG~~G   28 (131)
                      ||.||..|.+||+-.|.|+|+-|||...
T Consensus        46 lE~al~g~~~Ge~~~V~IpPE~AfGe~~   73 (174)
T COG1047          46 LEEALLGKEVGEEFTVEIPPEDAFGEYD   73 (174)
T ss_pred             HHHHHhCCCCCceeEEEeCchHhcCCCC
Confidence            5889999999999999999999999876

>PRK10737 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional

Probab=95.27  E-value=0.0086  Score=41.37  Aligned_cols=28  Identities=21%  Similarity=0.392  Sum_probs=26.0

Q ss_pred             CcchhcccCCCcEEEEEEcCCCCCCCCC
Q psy18096          1 MDYVLPLMETGEECQIEITARFGYGDKG   28 (131)
Q Consensus         1 ld~~l~~M~~gE~~~v~i~~~~ayG~~G   28 (131)
                      ||.+|..|.+|++..|+|+|+-|||...
T Consensus        45 lE~aL~G~~~Gd~~~v~l~peeAyGe~d   72 (196)
T PRK10737         45 LETALEGHEVGDKFDVAVGANDAYGQYD   72 (196)
T ss_pred             HHHHHcCCCCCCEEEEEEChHHhcCCCC
Confidence            5889999999999999999999999766

>KOG1127|consensus

Probab=95.13  E-value=0.083  Score=44.51  Aligned_cols=61  Identities=23%  Similarity=0.109  Sum_probs=55.3

Q ss_pred             HHHHHHHHHH--HhhhhhHHHHHHHHHHHHHhCC-hHHHHHHHHHHHhhCCCCHHHHHHHHHhh
Q psy18096         68 GILASQELLD--SLIKERINCYNNLAQAQIKLGS-LEPALMSLENVLNLDPNNIKALQRKAKCL  128 (131)
Q Consensus        68 y~~Ai~~~~~--~~~~~~~~~~~N~a~~~~kl~~-~~~a~~~~~~al~~dp~~~ka~~rrg~a~  128 (131)
                      |++||+...+  +.+|++-.++.-++.++..+++ .++|-..+-.|.++||+|.-||--.|..|
T Consensus        18 YeealEqskkvLk~dpdNYnA~vFLGvAl~sl~q~le~A~ehYv~AaKldpdnlLAWkGL~nLy   81 (1238)
T KOG1127|consen   18 YEEALEQSKKVLKEDPDNYNAQVFLGVALWSLGQDLEKAAEHYVLAAKLDPDNLLAWKGLGNLY   81 (1238)
T ss_pred             HHHHHHHHHHHHhcCCCcchhhhHHHHHHHhccCCHHHHHHHHHHHHhcChhhhHHHHHHHHHH
Confidence            9999999988  8889999999999999999998 99999999999999999998886665544

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=95.11  E-value=0.061  Score=41.12  Aligned_cols=42  Identities=29%  Similarity=0.361  Sum_probs=38.8

Q ss_pred             HHHHHHHHHH--HhhhhhHHHHHHHHHHHHHhCChHHHHHHHHH
Q psy18096         68 GILASQELLD--SLIKERINCYNNLAQAQIKLGSLEPALMSLEN  109 (131)
Q Consensus        68 y~~Ai~~~~~--~~~~~~~~~~~N~a~~~~kl~~~~~a~~~~~~  109 (131)
                      |+.|+.+..+  ++.|.....|..+|.||.++|+|+.|+...+.
T Consensus       250 ~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs  293 (395)
T PF09295_consen  250 YELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNS  293 (395)
T ss_pred             HHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhc
Confidence            8999999988  88999999999999999999999999987663

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>TIGR00540 hemY_coli hemY protein

Probab=95.10  E-value=0.12  Score=39.50  Aligned_cols=60  Identities=12%  Similarity=0.040  Sum_probs=45.4

Q ss_pred             HHHHHHHHH--HhhhhhH--HHHHHHHHHHHHhCChHHHHHHHH--HHHhhCCCCHHHHHHHHHhhh
Q psy18096         69 ILASQELLD--SLIKERI--NCYNNLAQAQIKLGSLEPALMSLE--NVLNLDPNNIKALQRKAKCLI  129 (131)
Q Consensus        69 ~~Ai~~~~~--~~~~~~~--~~~~N~a~~~~kl~~~~~a~~~~~--~al~~dp~~~ka~~rrg~a~~  129 (131)
                      ..+++.+++  +..|.++  .++..+|..++++|+|++|.+.++  .+++.+|++.- +...|.++.
T Consensus       316 ~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~-~~~La~ll~  381 (409)
T TIGR00540       316 EKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDAND-LAMAADAFD  381 (409)
T ss_pred             HHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHH-HHHHHHHHH
Confidence            344444544  5567888  888899999999999999999999  68888887765 336665543

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=95.08  E-value=0.11  Score=38.78  Aligned_cols=62  Identities=18%  Similarity=0.090  Sum_probs=50.5

Q ss_pred             HHHHHHHHHH-------HhhhhhHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHhhh
Q psy18096         68 GILASQELLD-------SLIKERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCLI  129 (131)
Q Consensus        68 y~~Ai~~~~~-------~~~~~~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~~~ka~~rrg~a~~  129 (131)
                      |++||+.-.+       +..-..+..|+-+|..++--++.+.|+....+|++.||++++|=.-.|...+
T Consensus       157 W~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~  225 (389)
T COG2956         157 WEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVEL  225 (389)
T ss_pred             HHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHH
Confidence            7888887775       3334566788889999998999999999999999999999988777776654

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=95.07  E-value=0.14  Score=38.91  Aligned_cols=52  Identities=15%  Similarity=0.166  Sum_probs=44.6

Q ss_pred             HHHHHHHHHH--HhhhhhHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHH
Q psy18096         68 GILASQELLD--SLIKERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIK  119 (131)
Q Consensus        68 y~~Ai~~~~~--~~~~~~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~~~k  119 (131)
                      +.+++..++.  +..|.++.++.-+|..+++.++|++|.+.++++++.+|++.-
T Consensus       310 ~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~  363 (398)
T PRK10747        310 PEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYD  363 (398)
T ss_pred             hHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHH
Confidence            5566666655  667889999999999999999999999999999999998754

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=95.04  E-value=0.18  Score=38.36  Aligned_cols=62  Identities=16%  Similarity=0.161  Sum_probs=38.2

Q ss_pred             HHHHHHHHHH--HhhhhhH-HHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHhhh
Q psy18096         68 GILASQELLD--SLIKERI-NCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCLI  129 (131)
Q Consensus        68 y~~Ai~~~~~--~~~~~~~-~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~~~ka~~rrg~a~~  129 (131)
                      +.+|..++.+  +..|... ....-.+..++..|++++|+..++++++.+|+|..++.-.+.++.
T Consensus       134 ~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~  198 (398)
T PRK10747        134 EARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYI  198 (398)
T ss_pred             HHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence            4444444444  3333332 222334667777788888888888888888887777776666654

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=95.03  E-value=0.24  Score=32.07  Aligned_cols=48  Identities=27%  Similarity=0.231  Sum_probs=40.2

Q ss_pred             hhHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCC---HHHHHHHHHhhh
Q psy18096         82 ERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNN---IKALQRKAKCLI  129 (131)
Q Consensus        82 ~~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~~---~ka~~rrg~a~~  129 (131)
                      ....+.+.+|.++...|++++|+..+++++...|+.   ..+.+|.+.+++
T Consensus        46 ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~   96 (145)
T PF09976_consen   46 YAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILL   96 (145)
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHH
Confidence            446678889999999999999999999999987655   457888888775

>KOG3081|consensus

Probab=94.98  E-value=0.1  Score=37.82  Aligned_cols=58  Identities=21%  Similarity=0.094  Sum_probs=47.1

Q ss_pred             HHHHHHHHHH--HhhhhhHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHH
Q psy18096         68 GILASQELLD--SLIKERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKA  125 (131)
Q Consensus        68 y~~Ai~~~~~--~~~~~~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~~~ka~~rrg  125 (131)
                      ++.|.-+|+.  +--+......+-.|.|++.+++|++|......+|..|++++..+-+.-
T Consensus       189 ~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nli  248 (299)
T KOG3081|consen  189 IQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLI  248 (299)
T ss_pred             hhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHH
Confidence            5555555554  334567778889999999999999999999999999999999887654

>KOG4555|consensus

Probab=94.97  E-value=0.053  Score=35.45  Aligned_cols=41  Identities=32%  Similarity=0.367  Sum_probs=36.1

Q ss_pred             HHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHhhhc
Q psy18096         90 LAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCLIL  130 (131)
Q Consensus        90 ~a~~~~kl~~~~~a~~~~~~al~~dp~~~ka~~rrg~a~~~  130 (131)
                      .+.+...-|+.+.|++-|.++|.+-|.++-+|.+|++++-+
T Consensus        49 ~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RL   89 (175)
T KOG4555|consen   49 KAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRL   89 (175)
T ss_pred             HHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHH
Confidence            35556677999999999999999999999999999999853

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=94.84  E-value=0.18  Score=39.93  Aligned_cols=50  Identities=16%  Similarity=0.171  Sum_probs=42.7

Q ss_pred             hhhhHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHhhhc
Q psy18096         80 IKERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCLIL  130 (131)
Q Consensus        80 ~~~~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~~~ka~~rrg~a~~~  130 (131)
                      ++..+.+|.-+|..++..|++++|...+++|+.++| +..+|...|+++..
T Consensus       416 ~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~  465 (517)
T PRK10153        416 LNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYEL  465 (517)
T ss_pred             CcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHH
Confidence            344556777888899999999999999999999999 57899999988753

>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=94.84  E-value=0.091  Score=26.50  Aligned_cols=30  Identities=20%  Similarity=0.424  Sum_probs=25.9

Q ss_pred             HHHHHHHHHHHHhCChHHHHHHHHHHHhhC
Q psy18096         85 NCYNNLAQAQIKLGSLEPALMSLENVLNLD  114 (131)
Q Consensus        85 ~~~~N~a~~~~kl~~~~~a~~~~~~al~~d  114 (131)
                      .+|.-+|-+-+..++|++|+.|+.++|++.
T Consensus         2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~   31 (38)
T PF10516_consen    2 DVYDLLGEISLENENFEQAIEDYEKALEIQ   31 (38)
T ss_pred             cHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence            357778888888899999999999999874

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].

>KOG0549|consensus

Probab=94.78  E-value=0.015  Score=39.54  Aligned_cols=29  Identities=34%  Similarity=0.622  Sum_probs=25.9

Q ss_pred             CcchhcccCCCcEEEEEEcCCCCCCCCCC
Q psy18096          1 MDYVLPLMETGEECQIEITARFGYGDKGE   29 (131)
Q Consensus         1 ld~~l~~M~~gE~~~v~i~~~~ayG~~G~   29 (131)
                      +|.++..|+.||+..++++|+.+||..|.
T Consensus        12 m~~~~~g~c~ge~rkvv~pp~l~fg~~~~   40 (188)
T KOG0549|consen   12 MDQALEGMCNGEKRKVVIPPHLGFGEGGR   40 (188)
T ss_pred             HHHHhhhhhccccceeccCCccccccccc
Confidence            47899999999999999999999995554

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=94.71  E-value=0.12  Score=37.07  Aligned_cols=49  Identities=18%  Similarity=0.205  Sum_probs=42.6

Q ss_pred             hhhHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHhhh
Q psy18096         81 KERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCLI  129 (131)
Q Consensus        81 ~~~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~~~ka~~rrg~a~~  129 (131)
                      +....++.-.+..+...|+|.+|+..+.++..++|+|.++|--+|-+|.
T Consensus        97 ~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaald  145 (257)
T COG5010          97 PKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALD  145 (257)
T ss_pred             cccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHH
Confidence            4444455558899999999999999999999999999999999998875

>KOG1156|consensus

Probab=94.50  E-value=0.14  Score=41.17  Aligned_cols=62  Identities=18%  Similarity=0.128  Sum_probs=54.1

Q ss_pred             HHHHHHHHHH--HhhhhhHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHhhh
Q psy18096         68 GILASQELLD--SLIKERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCLI  129 (131)
Q Consensus        68 y~~Ai~~~~~--~~~~~~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~~~ka~~rrg~a~~  129 (131)
                      |.+||++|..  .+.+.+..++.-+|.-+..|++|+.....=.+.|+++|.+.-.|+--+.++.
T Consensus        91 Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~  154 (700)
T KOG1156|consen   91 YDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQH  154 (700)
T ss_pred             HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence            9999999988  7788899999999999999999999999889999999988887777766654

>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models

Probab=94.40  E-value=0.067  Score=24.34  Aligned_cols=24  Identities=25%  Similarity=0.174  Sum_probs=21.1

Q ss_pred             HHHHHHHHHHHHhCChHHHHHHHH
Q psy18096         85 NCYNNLAQAQIKLGSLEPALMSLE  108 (131)
Q Consensus        85 ~~~~N~a~~~~kl~~~~~a~~~~~  108 (131)
                      .+..++|.++..+|++++|...++
T Consensus         2 ~a~~~la~~~~~~G~~~eA~~~l~   25 (26)
T PF07721_consen    2 RARLALARALLAQGDPDEAERLLR   25 (26)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHh
Confidence            467899999999999999998765

The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding

>KOG4151|consensus

Probab=94.35  E-value=0.046  Score=44.57  Aligned_cols=50  Identities=24%  Similarity=0.210  Sum_probs=45.1

Q ss_pred             hhhhHHHHHHHHHHHHHh--CChHHHHHHHHHHHhhCCCCHHHHHHHHHhhh
Q psy18096         80 IKERINCYNNLAQAQIKL--GSLEPALMSLENVLNLDPNNIKALQRKAKCLI  129 (131)
Q Consensus        80 ~~~~~~~~~N~a~~~~kl--~~~~~a~~~~~~al~~dp~~~ka~~rrg~a~~  129 (131)
                      ....+.++.|++.|++.+  ++|..++.+|+-|+...|...+++++|+.+|-
T Consensus        87 ~~~~a~~~~~~~s~~m~~~l~~~~~~~~E~~la~~~~p~i~~~Ll~r~~~y~  138 (748)
T KOG4151|consen   87 HHVVATLRSNQASCYMQLGLGEYPKAIPECELALESQPRISKALLKRARKYE  138 (748)
T ss_pred             chhhhhHHHHHHHHHhhcCccchhhhcCchhhhhhccchHHHHHhhhhhHHH
Confidence            456788999999999865  79999999999999999999999999988874

>TIGR00540 hemY_coli hemY protein

Probab=94.28  E-value=0.28  Score=37.39  Aligned_cols=62  Identities=18%  Similarity=0.211  Sum_probs=43.1

Q ss_pred             HHHHHHHHHH--Hhhhhh-HHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHhhh
Q psy18096         68 GILASQELLD--SLIKER-INCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCLI  129 (131)
Q Consensus        68 y~~Ai~~~~~--~~~~~~-~~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~~~ka~~rrg~a~~  129 (131)
                      +.+|..++.+  +..|.. ..+..-++..++..|+++.|+..++..++..|++..++.-.+.+++
T Consensus       134 ~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~  198 (409)
T TIGR00540       134 EARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYI  198 (409)
T ss_pred             HHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            4444444444  222333 2344556788888899999999999999999999888888777765

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>TIGR03504 FimV_Cterm FimV C-terminal domain

Probab=94.26  E-value=0.11  Score=27.04  Aligned_cols=27  Identities=41%  Similarity=0.442  Sum_probs=24.5

Q ss_pred             HHHHHHHHHHhCChHHHHHHHHHHHhh
Q psy18096         87 YNNLAQAQIKLGSLEPALMSLENVLNL  113 (131)
Q Consensus        87 ~~N~a~~~~kl~~~~~a~~~~~~al~~  113 (131)
                      .+++|.+|+.+|+++.|..-.++++.-
T Consensus         2 kLdLA~ayie~Gd~e~Ar~lL~evl~~   28 (44)
T TIGR03504         2 KLDLARAYIEMGDLEGARELLEEVIEE   28 (44)
T ss_pred             chHHHHHHHHcCChHHHHHHHHHHHHc
Confidence            368999999999999999999999953

This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.

>KOG2796|consensus

Probab=94.25  E-value=0.085  Score=38.44  Aligned_cols=49  Identities=27%  Similarity=0.261  Sum_probs=41.6

Q ss_pred             HHHHHHHHHH--HhhhhhHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCC
Q psy18096         68 GILASQELLD--SLIKERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPN  116 (131)
Q Consensus        68 y~~Ai~~~~~--~~~~~~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~  116 (131)
                      |-.|.+.|++  +.++..+.+-+|.|+|++-+|+..+|++..+.+++.+|.
T Consensus       268 ~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~  318 (366)
T KOG2796|consen  268 FAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPR  318 (366)
T ss_pred             hHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCc
Confidence            7788887877  667788888889999999999999999999999888884

>KOG1156|consensus

Probab=94.22  E-value=0.16  Score=40.87  Aligned_cols=47  Identities=17%  Similarity=0.244  Sum_probs=40.8

Q ss_pred             hhhhHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHH
Q psy18096         80 IKERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAK  126 (131)
Q Consensus        80 ~~~~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~~~ka~~rrg~  126 (131)
                      ++-...||--+|+.+-.-++|++||.++..||.++|+|...|...+.
T Consensus        71 d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlsl  117 (700)
T KOG1156|consen   71 DLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSL  117 (700)
T ss_pred             CcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHH
Confidence            45566788889999999999999999999999999999998877654

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=94.09  E-value=0.21  Score=31.79  Aligned_cols=45  Identities=27%  Similarity=0.191  Sum_probs=37.3

Q ss_pred             HHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCC---HHHHHHHHHhhh
Q psy18096         85 NCYNNLAQAQIKLGSLEPALMSLENVLNLDPNN---IKALQRKAKCLI  129 (131)
Q Consensus        85 ~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~~---~ka~~rrg~a~~  129 (131)
                      .+.+++|-++-.+|+.++|+..+.+++....+.   ..++...|.++.
T Consensus         2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr   49 (120)
T PF12688_consen    2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLR   49 (120)
T ss_pred             chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHH
Confidence            467899999999999999999999999975443   567777777664

>KOG2471|consensus

Probab=94.06  E-value=0.23  Score=39.17  Aligned_cols=48  Identities=17%  Similarity=0.212  Sum_probs=44.2

Q ss_pred             hHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHhhhc
Q psy18096         83 RINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCLIL  130 (131)
Q Consensus        83 ~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~~~ka~~rrg~a~~~  130 (131)
                      .-.+.+|.+..|+..|++..|..++.++.+.-..|+..|.|.+.|.+.
T Consensus       334 s~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEcCim  381 (696)
T KOG2471|consen  334 SMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAECCIM  381 (696)
T ss_pred             chhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence            446788999999999999999999999999999999999999998764

>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 []

Probab=93.95  E-value=0.078  Score=40.60  Aligned_cols=45  Identities=18%  Similarity=0.141  Sum_probs=40.0

Q ss_pred             HHHHHHHHHH----------HhhhhhHHHHHHHHHHHHHhCChHHHHHHHHHHHh
Q psy18096         68 GILASQELLD----------SLIKERINCYNNLAQAQIKLGSLEPALMSLENVLN  112 (131)
Q Consensus        68 y~~Ai~~~~~----------~~~~~~~~~~~N~a~~~~kl~~~~~a~~~~~~al~  112 (131)
                      |..|++.++.          ...+-.++.++..|.||+.|++|.+|++.+..+|.
T Consensus       138 Y~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~  192 (404)
T PF10255_consen  138 YYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILL  192 (404)
T ss_pred             HHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999887          33567888999999999999999999999999885

>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones []

Probab=93.87  E-value=0.34  Score=24.02  Aligned_cols=32  Identities=22%  Similarity=0.211  Sum_probs=25.2

Q ss_pred             HHHHHHHHHHHhCChHHHHHHHH--HHHhhCCCC
Q psy18096         86 CYNNLAQAQIKLGSLEPALMSLE--NVLNLDPNN  117 (131)
Q Consensus        86 ~~~N~a~~~~kl~~~~~a~~~~~--~al~~dp~~  117 (131)
                      .+.-+|.++..+|+|++|++.++  -+..+||.|
T Consensus         3 ~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~n   36 (36)
T PF07720_consen    3 YLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKYN   36 (36)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT-
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcccC
Confidence            45567899999999999999944  888888875

; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.

>PRK14574 hmsH outer membrane protein; Provisional

Probab=93.79  E-value=0.38  Score=40.28  Aligned_cols=62  Identities=21%  Similarity=0.105  Sum_probs=52.2

Q ss_pred             HHHHHHHHHH--HhhhhhHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHhhh
Q psy18096         68 GILASQELLD--SLIKERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCLI  129 (131)
Q Consensus        68 y~~Ai~~~~~--~~~~~~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~~~ka~~rrg~a~~  129 (131)
                      +.+|.+.++.  ...|.+..+.+++|.++...|.+.+|....+.++.++|++..+.+-+|.+++
T Consensus       432 l~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al  495 (822)
T PRK14574        432 LPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAM  495 (822)
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHH
Confidence            7888888887  6678888888888888888899999988888888888888888887777664

>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]

Probab=93.51  E-value=0.52  Score=34.84  Aligned_cols=47  Identities=19%  Similarity=0.214  Sum_probs=39.3

Q ss_pred             HhhhhhHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHH
Q psy18096         78 SLIKERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRK  124 (131)
Q Consensus        78 ~~~~~~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~~~ka~~rr  124 (131)
                      -+...+.+++.-.|..|++.|.+.+|+..|.+++.+||-+...++-.
T Consensus       273 rle~ly~kllgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~l  319 (361)
T COG3947         273 RLEQLYMKLLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGL  319 (361)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHH
Confidence            34567788888889999999999999999999999999776555433

>KOG4340|consensus

Probab=93.51  E-value=0.3  Score=36.37  Aligned_cols=61  Identities=18%  Similarity=-0.001  Sum_probs=51.8

Q ss_pred             HHHHHHHHHH--HhhhhhHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHhh
Q psy18096         68 GILASQELLD--SLIKERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCL  128 (131)
Q Consensus        68 y~~Ai~~~~~--~~~~~~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~~~ka~~rrg~a~  128 (131)
                      |..||+++..  +-.|.....++-++-||....+|..|-.++++.-.+-|...+--+.-++.+
T Consensus        26 y~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSL   88 (459)
T KOG4340|consen   26 YADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSL   88 (459)
T ss_pred             HHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHH
Confidence            9999999998  666777788889999999999999999999999999998876555555543

>KOG4162|consensus

Probab=93.49  E-value=0.39  Score=39.42  Aligned_cols=52  Identities=21%  Similarity=0.212  Sum_probs=47.7

Q ss_pred             HhhhhhHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHhhh
Q psy18096         78 SLIKERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCLI  129 (131)
Q Consensus        78 ~~~~~~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~~~ka~~rrg~a~~  129 (131)
                      .+.+..+..|+=+|.++...|++.+|...+..|+.+||+++.+.--.|+++.
T Consensus       678 ~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~ll  729 (799)
T KOG4162|consen  678 KIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLL  729 (799)
T ss_pred             hcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence            5678889999999999999999999999999999999999988888887775

>KOG2003|consensus

Probab=93.38  E-value=0.32  Score=38.14  Aligned_cols=61  Identities=18%  Similarity=0.074  Sum_probs=39.9

Q ss_pred             HHHHHHHHHH--HhhhhhHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHhh
Q psy18096         68 GILASQELLD--SLIKERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCL  128 (131)
Q Consensus        68 y~~Ai~~~~~--~~~~~~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~~~ka~~rrg~a~  128 (131)
                      |.+|...|..  .-+..-..+++|.++.+-++|+.++|++++-+.-.+--+|+..++.-+..|
T Consensus       506 ~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qianiy  568 (840)
T KOG2003|consen  506 LDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIY  568 (840)
T ss_pred             HHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            7777777766  223445566777777777777777777777665555556666666655544

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=93.36  E-value=0.46  Score=32.74  Aligned_cols=48  Identities=19%  Similarity=0.180  Sum_probs=39.4

Q ss_pred             hHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCC---HHHHHHHHHhhhc
Q psy18096         83 RINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNN---IKALQRKAKCLIL  130 (131)
Q Consensus        83 ~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~~---~ka~~rrg~a~~~  130 (131)
                      ....+...|...+..|+|.+|+..+++++..-|.+   .+|++..|.++..
T Consensus         4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~   54 (203)
T PF13525_consen    4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYK   54 (203)
T ss_dssp             -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHH
Confidence            45678889999999999999999999999988765   6889999988764

>PRK10941 hypothetical protein; Provisional

Probab=93.15  E-value=0.8  Score=33.29  Aligned_cols=60  Identities=15%  Similarity=-0.009  Sum_probs=53.6

Q ss_pred             HHHHHHHHHH--HhhhhhHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHh
Q psy18096         68 GILASQELLD--SLIKERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKC  127 (131)
Q Consensus        68 y~~Ai~~~~~--~~~~~~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~~~ka~~rrg~a  127 (131)
                      |.+|+++.+.  .+.|..+.-+--||..|.++|.+..|+.|.+.-++.-|+++.+-.=+.+.
T Consensus       197 ~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql  258 (269)
T PRK10941        197 MELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQI  258 (269)
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHH
Confidence            9999999988  88899998888999999999999999999999999999998776655443

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=93.15  E-value=0.7  Score=36.16  Aligned_cols=60  Identities=17%  Similarity=0.014  Sum_probs=49.7

Q ss_pred             HHHHHHHHHH------HhhhhhHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHhh
Q psy18096         68 GILASQELLD------SLIKERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCL  128 (131)
Q Consensus        68 y~~Ai~~~~~------~~~~~~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~~~ka~~rrg~a~  128 (131)
                      -.+||+.|+.      +..+...-++.-++.|++-+.+|++|..++.+.++.+ ++.||+|.-..|-
T Consensus       283 ~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-~WSka~Y~Y~~a~  348 (468)
T PF10300_consen  283 LEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-KWSKAFYAYLAAA  348 (468)
T ss_pred             HHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-ccHHHHHHHHHHH
Confidence            7888888886      4556677889999999999999999999999988754 6789998875543

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=93.01  E-value=0.072  Score=37.77  Aligned_cols=51  Identities=20%  Similarity=-0.061  Sum_probs=48.8

Q ss_pred             HHHHHHHHHH--HhhhhhHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCH
Q psy18096         68 GILASQELLD--SLIKERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNI  118 (131)
Q Consensus        68 y~~Ai~~~~~--~~~~~~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~~~  118 (131)
                      |..|.+.++.  |++|.+--++.||+++..--|+|.-|.+++.+-.+-||+++
T Consensus       115 fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DP  167 (297)
T COG4785         115 FDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDP  167 (297)
T ss_pred             chHHHHHhhhHhccCCcchHHHhccceeeeecCchHhhHHHHHHHHhcCCCCh
Confidence            8999999999  99999999999999999999999999999999999999886

>KOG3824|consensus

Probab=92.81  E-value=0.21  Score=37.24  Aligned_cols=60  Identities=17%  Similarity=0.090  Sum_probs=49.7

Q ss_pred             HHHHHHHHHH--HhhhhhHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHh
Q psy18096         68 GILASQELLD--SLIKERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKC  127 (131)
Q Consensus        68 y~~Ai~~~~~--~~~~~~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~~~ka~~rrg~a  127 (131)
                      -++|.+++..  .+.|.++.++...+...-.-++.-+|-.++-+||.++|.|.+|+-.|+..
T Consensus       132 ~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~RT  193 (472)
T KOG3824|consen  132 LEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRART  193 (472)
T ss_pred             hHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhcc
Confidence            5666666666  67888888888888888877888889999999999999999999888754

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=92.37  E-value=0.79  Score=33.21  Aligned_cols=50  Identities=18%  Similarity=0.161  Sum_probs=40.1

Q ss_pred             HHHHHHHHHH--------HhhhhhH-HHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCC
Q psy18096         68 GILASQELLD--------SLIKERI-NCYNNLAQAQIKLGSLEPALMSLENVLNLDPNN  117 (131)
Q Consensus        68 y~~Ai~~~~~--------~~~~~~~-~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~~  117 (131)
                      |.+|+.+|++        .+....+ ..+++..+|++.+|++..|...+++..+.||.-
T Consensus       171 y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F  229 (282)
T PF14938_consen  171 YEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSF  229 (282)
T ss_dssp             HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTS
T ss_pred             HHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence            9999999998        1122233 467899999999999999999999999999843

>KOG1586|consensus

Probab=92.36  E-value=1  Score=32.31  Aligned_cols=62  Identities=19%  Similarity=0.141  Sum_probs=43.3

Q ss_pred             HHHHHHHHHH--------HhhhhhHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCC------HHHHHHH-HHhhh
Q psy18096         68 GILASQELLD--------SLIKERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNN------IKALQRK-AKCLI  129 (131)
Q Consensus        68 y~~Ai~~~~~--------~~~~~~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~~------~ka~~rr-g~a~~  129 (131)
                      +.+||.+|+.        +....-..+++-.|.---.+++|.+||+.++++....-+|      +|.||-+ |.+++
T Consensus       130 ~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl  206 (288)
T KOG1586|consen  130 FEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHL  206 (288)
T ss_pred             HHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhH
Confidence            5666666665        4455556677777777777899999999999998766554      5666544 55554

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=92.10  E-value=0.88  Score=29.25  Aligned_cols=44  Identities=23%  Similarity=0.032  Sum_probs=38.1

Q ss_pred             HHHHHHHHHH--HhhhhhHHHHHHHHHHHHHhCChHHHHHHHHHHH
Q psy18096         68 GILASQELLD--SLIKERINCYNNLAQAQIKLGSLEPALMSLENVL  111 (131)
Q Consensus        68 y~~Ai~~~~~--~~~~~~~~~~~N~a~~~~kl~~~~~a~~~~~~al  111 (131)
                      |.+|+..+..  .++|..-.+|..+-.+|..+|++.+|++.+.+..
T Consensus        78 ~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~  123 (146)
T PF03704_consen   78 YEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYR  123 (146)
T ss_dssp             HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence            8888888888  8899999999999999999999999999888763

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=92.04  E-value=0.52  Score=34.08  Aligned_cols=62  Identities=21%  Similarity=0.109  Sum_probs=43.2

Q ss_pred             HHHHHHHHHH-----HhhhhhHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCH---HHHHHHHHhhh
Q psy18096         68 GILASQELLD-----SLIKERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNI---KALQRKAKCLI  129 (131)
Q Consensus        68 y~~Ai~~~~~-----~~~~~~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~~~---ka~~rrg~a~~  129 (131)
                      |..|...|..     .-.+....+++=++.|+..+|+|++|...+..+.+--|++.   .++|..|.++.
T Consensus       157 y~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~  226 (262)
T COG1729         157 YAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLG  226 (262)
T ss_pred             HHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHH
Confidence            4444444444     11344556777788999999999999999999888777664   55887777653

>KOG1127|consensus

Probab=91.93  E-value=0.43  Score=40.51  Aligned_cols=59  Identities=19%  Similarity=0.039  Sum_probs=47.7

Q ss_pred             HHHHHHHHHH--HhhhhhHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHH
Q psy18096         68 GILASQELLD--SLIKERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAK  126 (131)
Q Consensus        68 y~~Ai~~~~~--~~~~~~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~~~ka~~rrg~  126 (131)
                      +.+||..+..  ..+|....+|.-++.+|...|+|..|++.+++|..++|.+.-+-|..+.
T Consensus       578 ~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~  638 (1238)
T KOG1127|consen  578 LHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAV  638 (1238)
T ss_pred             hhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHH
Confidence            6777777777  6678888888888888888888888888888888888888777666553

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=91.79  E-value=0.6  Score=33.79  Aligned_cols=44  Identities=20%  Similarity=0.157  Sum_probs=40.1

Q ss_pred             HHHHHHHHHHhCChHHHHHHHHHHHhhCCCC---HHHHHHHHHhhhc
Q psy18096         87 YNNLAQAQIKLGSLEPALMSLENVLNLDPNN---IKALQRKAKCLIL  130 (131)
Q Consensus        87 ~~N~a~~~~kl~~~~~a~~~~~~al~~dp~~---~ka~~rrg~a~~~  130 (131)
                      .+|.|.-+++.|+|.+|..-|..=++.=|++   ..|+||.|+++..
T Consensus       144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~  190 (262)
T COG1729         144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYA  190 (262)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHh
Confidence            7899999999999999999999999998877   5799999998863

>TIGR00115 tig trigger factor

Probab=91.66  E-value=0.31  Score=37.26  Aligned_cols=45  Identities=24%  Similarity=0.302  Sum_probs=36.2

Q ss_pred             cchhcccCCCcEEEEEEcCCCCCCCCCCCCCCCCCCceEEEEEeeccccCC
Q psy18096          2 DYVLPLMETGEECQIEITARFGYGDKGEPSKSIPPGAKLYYSLTLHSVLPD   52 (131)
Q Consensus         2 d~~l~~M~~gE~~~v~i~~~~ayG~~G~~~~~ip~~~~~~~~v~l~~~~~~   52 (131)
                      +.+|.+|++|+...|.++....|+..+.      .|.++.|++++.++.+.
T Consensus       188 ee~L~G~k~Gd~~~~~v~~p~~~~~~~~------~gk~~~f~v~i~~I~~~  232 (408)
T TIGR00115       188 EEQLVGMKAGEEKEIKVTFPEDYHAEEL------AGKEATFKVTVKEVKEK  232 (408)
T ss_pred             HHHhCCCCCCCeeEEEecCccccCcccC------CCCeEEEEEEEEEeccC
Confidence            5689999999999999986666665543      57788999999998653

Trigger factor is a ribosome-associated molecular chaperone and is the first chaperone to interact with nascent polypeptide. Trigger factor can bind at the same time as the signal recognition particle (SRP), but is excluded by the SRP receptor (FtsY). The central domain of trigger factor has peptidyl-prolyl cis/trans isomerase activity. This protein is found in a single copy in virtually every bacterial genome.

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=91.55  E-value=1.8  Score=27.93  Aligned_cols=61  Identities=34%  Similarity=0.307  Sum_probs=40.1

Q ss_pred             HHHHHHHHHH--Hhhhh-hHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHhh
Q psy18096         68 GILASQELLD--SLIKE-RINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCL  128 (131)
Q Consensus        68 y~~Ai~~~~~--~~~~~-~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~~~ka~~rrg~a~  128 (131)
                      +..|+..+..  ...+. ....+.+++.++...+.+.+|+..+..++...|.....++..+..+
T Consensus       183 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~  246 (291)
T COG0457         183 YEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLL  246 (291)
T ss_pred             HHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHH
Confidence            5666666665  33344 4666777777777777777777777777777776555555555443

>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B

Probab=91.34  E-value=1.2  Score=26.81  Aligned_cols=40  Identities=23%  Similarity=0.272  Sum_probs=34.4

Q ss_pred             HhhhhhHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCC
Q psy18096         78 SLIKERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNN  117 (131)
Q Consensus        78 ~~~~~~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~~  117 (131)
                      +.+|....+...+|.+++..|++++|++.+-.++..|+++
T Consensus        16 a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~   55 (90)
T PF14561_consen   16 AANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDY   55 (90)
T ss_dssp             HHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTC
T ss_pred             HcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc
Confidence            5678899999999999999999999999999999999877

>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A

Probab=91.31  E-value=1.3  Score=29.03  Aligned_cols=45  Identities=31%  Similarity=0.268  Sum_probs=36.3

Q ss_pred             HHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHhhh
Q psy18096         85 NCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCLI  129 (131)
Q Consensus        85 ~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~~~ka~~rrg~a~~  129 (131)
                      .....+|...+..|+|..|.+-++.++..||+|..|-.-++.+|.
T Consensus        71 d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~  115 (141)
T PF14863_consen   71 DKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALE  115 (141)
T ss_dssp             HHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHH
Confidence            345567888889999999999999999999999999888888764

>KOG3785|consensus

Probab=91.01  E-value=1  Score=34.34  Aligned_cols=42  Identities=19%  Similarity=-0.097  Sum_probs=24.1

Q ss_pred             HHHHHHHHHH--HhhhhhHHHHHHHHHHHHHhCChHHHHHHHHH
Q psy18096         68 GILASQELLD--SLIKERINCYNNLAQAQIKLGSLEPALMSLEN  109 (131)
Q Consensus        68 y~~Ai~~~~~--~~~~~~~~~~~N~a~~~~kl~~~~~a~~~~~~  109 (131)
                      |++|+..|+-  +.+.....+..|+|-|+.-+|.|.+|.....+
T Consensus        73 Y~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~k  116 (557)
T KOG3785|consen   73 YEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAEK  116 (557)
T ss_pred             HHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHhh
Confidence            6666666655  33333455566666666666666666554444

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=90.65  E-value=0.65  Score=39.22  Aligned_cols=52  Identities=15%  Similarity=0.043  Sum_probs=47.5

Q ss_pred             HhhhhhHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHhhh
Q psy18096         78 SLIKERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCLI  129 (131)
Q Consensus        78 ~~~~~~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~~~ka~~rrg~a~~  129 (131)
                      ..+|.+..++.-+...|...+++++|+..|+.+++..|+...+||-.|..+.
T Consensus        25 ~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~   76 (906)
T PRK14720         25 NYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSL   76 (906)
T ss_pred             cCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHH
Confidence            4568899999999999999999999999999999999999999999998543

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=90.18  E-value=1.7  Score=30.95  Aligned_cols=48  Identities=17%  Similarity=0.033  Sum_probs=39.1

Q ss_pred             hHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHH---HHHHHHhhhc
Q psy18096         83 RINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKA---LQRKAKCLIL  130 (131)
Q Consensus        83 ~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~~~ka---~~rrg~a~~~  130 (131)
                      ....+...|.-.++.|+|++|+..+++++...|....+   .++.|.++..
T Consensus        31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~   81 (243)
T PRK10866         31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYK   81 (243)
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHh
Confidence            45556678888888999999999999999999988544   4888887753

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=90.05  E-value=0.8  Score=32.80  Aligned_cols=51  Identities=25%  Similarity=0.306  Sum_probs=43.7

Q ss_pred             HHHHHHHHHH--HhhhhhHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCH
Q psy18096         68 GILASQELLD--SLIKERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNI  118 (131)
Q Consensus        68 y~~Ai~~~~~--~~~~~~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~~~  118 (131)
                      +..|.+.|++  ++.|.-..-|..++.-..|.|+++.|.+.+.++|++||.+.
T Consensus        11 ~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~   63 (287)
T COG4976          11 AEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDH   63 (287)
T ss_pred             hHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcccc
Confidence            4456667776  67788888899999999999999999999999999999774

>KOG4642|consensus

Probab=89.86  E-value=0.24  Score=35.56  Aligned_cols=40  Identities=10%  Similarity=0.179  Sum_probs=34.6

Q ss_pred             HHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHhhhc
Q psy18096         91 AQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCLIL  130 (131)
Q Consensus        91 a~~~~kl~~~~~a~~~~~~al~~dp~~~ka~~rrg~a~~~  130 (131)
                      +.++..-+.|..||.++.+||.++|..+.-|-+|+.+|+.
T Consensus        17 gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk   56 (284)
T KOG4642|consen   17 GNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLK   56 (284)
T ss_pred             cccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHH
Confidence            4455667889999999999999999999999999998864

>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane

Probab=89.44  E-value=3  Score=24.63  Aligned_cols=46  Identities=20%  Similarity=0.169  Sum_probs=36.0

Q ss_pred             HHHHHHHHHH-----HhhhhhHHHHHHHHHHHHHhCChHHHHHHHHHHHhh
Q psy18096         68 GILASQELLD-----SLIKERINCYNNLAQAQIKLGSLEPALMSLENVLNL  113 (131)
Q Consensus        68 y~~Ai~~~~~-----~~~~~~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~  113 (131)
                      ..+||...++     .-.+....++.-++.+|..+|+|.++++....-+.+
T Consensus        22 ~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~   72 (80)
T PF10579_consen   22 TQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQLEI   72 (80)
T ss_pred             HHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5677777766     113567788899999999999999999988776654

Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane

>KOG4340|consensus

Probab=89.42  E-value=1  Score=33.67  Aligned_cols=46  Identities=17%  Similarity=0.054  Sum_probs=41.3

Q ss_pred             HHHHHHHHHH--HhhhhhHHHHHHHHHHHHHhCChHHHHHHHHHHHhh
Q psy18096         68 GILASQELLD--SLIKERINCYNNLAQAQIKLGSLEPALMSLENVLNL  113 (131)
Q Consensus        68 y~~Ai~~~~~--~~~~~~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~  113 (131)
                      |+.|++-++.  ++....+-+-+|+|+|+.+.++|..|++...+.++.
T Consensus       160 yEaAvqkFqaAlqvsGyqpllAYniALaHy~~~qyasALk~iSEIieR  207 (459)
T KOG4340|consen  160 YEAAVQKFQAALQVSGYQPLLAYNLALAHYSSRQYASALKHISEIIER  207 (459)
T ss_pred             HHHHHHHHHHHHhhcCCCchhHHHHHHHHHhhhhHHHHHHHHHHHHHh
Confidence            9999999988  677778888899999999999999999999998864

>COG2912 Uncharacterized conserved protein [Function unknown]

Probab=89.34  E-value=1.1  Score=32.60  Aligned_cols=50  Identities=20%  Similarity=0.189  Sum_probs=40.9

Q ss_pred             hhhhHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHhhh
Q psy18096         80 IKERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCLI  129 (131)
Q Consensus        80 ~~~~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~~~ka~~rrg~a~~  129 (131)
                      .........|+=..++.-++|+.|..+.++.|.++|.++.-+-.||.+|.
T Consensus       177 ~~il~rll~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~  226 (269)
T COG2912         177 REILSRLLRNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYA  226 (269)
T ss_pred             HHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHH
Confidence            34556677788888888899999999999999999998888888887775

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=88.85  E-value=1.8  Score=31.79  Aligned_cols=49  Identities=22%  Similarity=0.097  Sum_probs=38.8

Q ss_pred             hhhHHHHHHHHHHHHHh------CChHHHHHHHHHHHhhCCCCHHHHHHHHHhhh
Q psy18096         81 KERINCYNNLAQAQIKL------GSLEPALMSLENVLNLDPNNIKALQRKAKCLI  129 (131)
Q Consensus        81 ~~~~~~~~N~a~~~~kl------~~~~~a~~~~~~al~~dp~~~ka~~rrg~a~~  129 (131)
                      .....++.-+|.....+      +..++++..+.++++++|++.|+|++-|..+.
T Consensus       249 ~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~  303 (352)
T PF02259_consen  249 ELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFND  303 (352)
T ss_pred             HHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHHH
Confidence            34455666666666666      78888999999999999999999999887653

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT

Probab=88.72  E-value=3  Score=26.90  Aligned_cols=45  Identities=22%  Similarity=0.013  Sum_probs=33.6

Q ss_pred             HHHHHHHHHH--Hhhh----hhHHHHHHHHHHHHHhCChHHHHHHHHHHHh
Q psy18096         68 GILASQELLD--SLIK----ERINCYNNLAQAQIKLGSLEPALMSLENVLN  112 (131)
Q Consensus        68 y~~Ai~~~~~--~~~~----~~~~~~~N~a~~~~kl~~~~~a~~~~~~al~  112 (131)
                      -.+|+.+|++  ++..    .-+.+-.|||.+.--+|+.++|+..+..+-+
T Consensus        78 A~~aL~YFNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agE  128 (144)
T PF12968_consen   78 ADRALRYFNRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGE  128 (144)
T ss_dssp             HHHHHHHHHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Confidence            4566777777  5543    4455667999999999999999999988765

The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.

>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=88.33  E-value=3.5  Score=24.03  Aligned_cols=40  Identities=20%  Similarity=0.161  Sum_probs=28.2

Q ss_pred             hHHHHHHHHHHHHHhCChHHHHHHHHHHHh-------hCCCCHHHHH
Q psy18096         83 RINCYNNLAQAQIKLGSLEPALMSLENVLN-------LDPNNIKALQ  122 (131)
Q Consensus        83 ~~~~~~N~a~~~~kl~~~~~a~~~~~~al~-------~dp~~~ka~~  122 (131)
                      .+.-+..+|.-+-+.|++.+|+.++.++++       .-|++.+...
T Consensus         5 ~A~~~a~~AVe~D~~gr~~eAi~~Y~~aIe~L~q~~~~~pD~~~k~~   51 (75)
T cd02682           5 MARKYAINAVKAEKEGNAEDAITNYKKAIEVLSQIVKNYPDSPTRLI   51 (75)
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhCCChHHHHH
Confidence            455677888888888888888877777665       4576654433

This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=87.69  E-value=5  Score=28.11  Aligned_cols=59  Identities=12%  Similarity=0.022  Sum_probs=42.1

Q ss_pred             HHHHHHHHHH----Hh----hhhhHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCH-HHHHHHHH
Q psy18096         68 GILASQELLD----SL----IKERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNI-KALQRKAK  126 (131)
Q Consensus        68 y~~Ai~~~~~----~~----~~~~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~~~-ka~~rrg~  126 (131)
                      +++|++.|.+    +-    ......+.+=+|..+.++|++++|+..+.+++..-..+. ..+.++|+
T Consensus       141 l~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~s~~~~l~~~AR  208 (214)
T PF09986_consen  141 LRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKKASKEPKLKDMAR  208 (214)
T ss_pred             HHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCCCCcHHHHHHHH
Confidence            7888888888    11    122345666789999999999999999999998653332 25555554

>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]

Probab=87.30  E-value=4.3  Score=28.85  Aligned_cols=45  Identities=13%  Similarity=-0.045  Sum_probs=37.0

Q ss_pred             HHHHHHHHHH---HhhhhhHHHHHHHHHHHHH-hCChHHHHHHHHHHHh
Q psy18096         68 GILASQELLD---SLIKERINCYNNLAQAQIK-LGSLEPALMSLENVLN  112 (131)
Q Consensus        68 y~~Ai~~~~~---~~~~~~~~~~~N~a~~~~k-l~~~~~a~~~~~~al~  112 (131)
                      |++|+.....   ..+|....+.+|.+..|.. +|+.++|+..+.+|+.
T Consensus       149 Y~~A~~~a~~~L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd  197 (236)
T PF00244_consen  149 YEEALEIAKKELPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFD  197 (236)
T ss_dssp             HHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHH
T ss_pred             hhhHHHHHhcccCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence            9999988887   4567888889999988865 8999999998888875

There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....

>PRK01490 tig trigger factor; Provisional

Probab=87.03  E-value=1.1  Score=34.55  Aligned_cols=45  Identities=24%  Similarity=0.307  Sum_probs=34.4

Q ss_pred             cchhcccCCCcEEEEEEcCCCCCCCCCCCCCCCCCCceEEEEEeeccccCC
Q psy18096          2 DYVLPLMETGEECQIEITARFGYGDKGEPSKSIPPGAKLYYSLTLHSVLPD   52 (131)
Q Consensus         2 d~~l~~M~~gE~~~v~i~~~~ayG~~G~~~~~ip~~~~~~~~v~l~~~~~~   52 (131)
                      +.+|.+|++||...|.+...-.|+....      .|.++.|.++++++...
T Consensus       199 ee~L~G~k~Ge~~~~~~~~p~~~~~~~l------agk~~~f~v~v~~V~~~  243 (435)
T PRK01490        199 EEQLVGMKAGEEKTIDVTFPEDYHAEDL------AGKEATFKVTVKEVKEK  243 (435)
T ss_pred             HHHhCCCCCCCeeEEEecCccccccccC------CCCeEEEEEEEEEeccC
Confidence            5689999999999999876545544332      46788999999998653

>KOG2796|consensus

Probab=86.96  E-value=0.8  Score=33.55  Aligned_cols=48  Identities=27%  Similarity=0.356  Sum_probs=41.1

Q ss_pred             hhHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHhhh
Q psy18096         82 ERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCLI  129 (131)
Q Consensus        82 ~~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~~~ka~~rrg~a~~  129 (131)
                      ....++-|.+..|+-.++|.+|...+++.+..||.++-+-..+|.+++
T Consensus       250 ~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcll  297 (366)
T KOG2796|consen  250 GKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLL  297 (366)
T ss_pred             hhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHH
Confidence            355678899999999999999999999999999998877777776654

>KOG1130|consensus

Probab=86.30  E-value=1.9  Score=33.60  Aligned_cols=61  Identities=13%  Similarity=0.059  Sum_probs=37.1

Q ss_pred             HHHHHHHHHH------Hh--hhhhHHHHHHHHHHHHHhCChHHHHHHHHHHHhhC------CCCHHHHHHHHHhh
Q psy18096         68 GILASQELLD------SL--IKERINCYNNLAQAQIKLGSLEPALMSLENVLNLD------PNNIKALQRKAKCL  128 (131)
Q Consensus        68 y~~Ai~~~~~------~~--~~~~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~d------p~~~ka~~rrg~a~  128 (131)
                      |..|+++|..      ++  ....+...+.++.+|.-+.++.+||.+..+-|.+-      -.-.+|+|..|.|+
T Consensus       251 fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~  325 (639)
T KOG1130|consen  251 FELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAF  325 (639)
T ss_pred             cHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence            6667776666      22  12333334457777777888888887777666543      23356666666655

>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat

Probab=86.30  E-value=1.5  Score=19.82  Aligned_cols=27  Identities=30%  Similarity=0.498  Sum_probs=23.4

Q ss_pred             HHHHHHHHHHHhCChHHHHHHHHHHHh
Q psy18096         86 CYNNLAQAQIKLGSLEPALMSLENVLN  112 (131)
Q Consensus        86 ~~~N~a~~~~kl~~~~~a~~~~~~al~  112 (131)
                      .|+.+-.+|.+.|++++|.+.+++..+
T Consensus         2 ~y~~li~~~~~~~~~~~a~~~~~~M~~   28 (31)
T PF01535_consen    2 TYNSLISGYCKMGQFEEALEVFDEMRE   28 (31)
T ss_pred             cHHHHHHHHHccchHHHHHHHHHHHhH
Confidence            477888999999999999999988654

Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.

>KOG3824|consensus

Probab=86.09  E-value=3.2  Score=31.20  Aligned_cols=44  Identities=27%  Similarity=0.218  Sum_probs=38.5

Q ss_pred             HHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHhh
Q psy18096         85 NCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCL  128 (131)
Q Consensus        85 ~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~~~ka~~rrg~a~  128 (131)
                      .+-.|.|.-..+.|+-++|..-+.-||.++|.++.++.+.|+-.
T Consensus       117 ~~Al~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~  160 (472)
T KOG3824|consen  117 ILALKAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFR  160 (472)
T ss_pred             HHHHHHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHH
Confidence            34557777778899999999999999999999999999998753

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=85.37  E-value=6.3  Score=25.91  Aligned_cols=53  Identities=15%  Similarity=-0.012  Sum_probs=44.5

Q ss_pred             HHHHHHHHHH--Hhhhh---hHHHHHHHHHHHHHhCC---------------hHHHHHHHHHHHhhCCCCHHH
Q psy18096         68 GILASQELLD--SLIKE---RINCYNNLAQAQIKLGS---------------LEPALMSLENVLNLDPNNIKA  120 (131)
Q Consensus        68 y~~Ai~~~~~--~~~~~---~~~~~~N~a~~~~kl~~---------------~~~a~~~~~~al~~dp~~~ka  120 (131)
                      |.+|+..+++  ++.|.   ..-+++-+|++++++..               ...|+.++.+++..-|++.-|
T Consensus        63 y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ya  135 (142)
T PF13512_consen   63 YEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSEYA  135 (142)
T ss_pred             HHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCChhH
Confidence            8999999998  55543   44578899999999987               899999999999999988644

>KOG1130|consensus

Probab=85.09  E-value=1.8  Score=33.76  Aligned_cols=46  Identities=24%  Similarity=0.119  Sum_probs=35.2

Q ss_pred             HHHHHHHHHH--Hh------hhhhHHHHHHHHHHHHHhCChHHHHHHHHHHHhh
Q psy18096         68 GILASQELLD--SL------IKERINCYNNLAQAQIKLGSLEPALMSLENVLNL  113 (131)
Q Consensus        68 y~~Ai~~~~~--~~------~~~~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~  113 (131)
                      |.+||..=..  ++      ..-...++.|++.||+-+|+++.|++++..++.+
T Consensus       211 f~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~L  264 (639)
T KOG1130|consen  211 FDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNL  264 (639)
T ss_pred             HHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHH
Confidence            7777764444  22      2334568999999999999999999999987765

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=84.69  E-value=6.9  Score=31.10  Aligned_cols=46  Identities=26%  Similarity=0.372  Sum_probs=35.1

Q ss_pred             HHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCC--CHHHHHHHHHhhh
Q psy18096         84 INCYNNLAQAQIKLGSLEPALMSLENVLNLDPN--NIKALQRKAKCLI  129 (131)
Q Consensus        84 ~~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~--~~ka~~rrg~a~~  129 (131)
                      .-+...+|.|.-|+|+.+|||+.+.+.++..|.  +.-..+..-.+|+
T Consensus       259 ~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LL  306 (539)
T PF04184_consen  259 VYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALL  306 (539)
T ss_pred             hhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHH
Confidence            445568999999999999999999999988775  3445555555544

The molecular function of this protein is uncertain.

>PF12854 PPR_1: PPR repeat

Probab=84.50  E-value=2.9  Score=20.08  Aligned_cols=27  Identities=22%  Similarity=0.400  Sum_probs=23.4

Q ss_pred             hHHHHHHHHHHHHHhCChHHHHHHHHH
Q psy18096         83 RINCYNNLAQAQIKLGSLEPALMSLEN  109 (131)
Q Consensus        83 ~~~~~~N~a~~~~kl~~~~~a~~~~~~  109 (131)
                      +...|+-+-.+|.+.|+.++|++.+++
T Consensus         6 d~~ty~~lI~~~Ck~G~~~~A~~l~~~   32 (34)
T PF12854_consen    6 DVVTYNTLIDGYCKAGRVDEAFELFDE   32 (34)
T ss_pred             cHhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence            556788899999999999999998765

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=84.46  E-value=3.6  Score=33.61  Aligned_cols=60  Identities=13%  Similarity=0.078  Sum_probs=43.9

Q ss_pred             HHHHHHHHHH-HhhhhhHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHhh
Q psy18096         68 GILASQELLD-SLIKERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCL  128 (131)
Q Consensus        68 y~~Ai~~~~~-~~~~~~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~~~ka~~rrg~a~  128 (131)
                      +++|.+++++ ...| ....|+.+..++.+.|+++.|...+++.++++|++...|.-.+.+|
T Consensus       478 ~~eA~~~~~~~~~~p-~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y  538 (697)
T PLN03081        478 LDEAYAMIRRAPFKP-TVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLY  538 (697)
T ss_pred             HHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHH
Confidence            5666666655 2223 4556888888888999999999999999999998876665555444

>KOG1174|consensus

Probab=84.29  E-value=4.2  Score=31.72  Aligned_cols=58  Identities=16%  Similarity=0.096  Sum_probs=46.1

Q ss_pred             HHHHHHHHHH--HhhhhhHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHH
Q psy18096         68 GILASQELLD--SLIKERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKA  125 (131)
Q Consensus        68 y~~Ai~~~~~--~~~~~~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~~~ka~~rrg  125 (131)
                      .++|+-.|..  .+.|....+|.-+-.||+-.|.+.||.-..+.++..=|++++++---|
T Consensus       350 ~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g  409 (564)
T KOG1174|consen  350 HTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSARSLTLFG  409 (564)
T ss_pred             hHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchhhhhhhc
Confidence            4555555555  566788888889999999999999999999999988888888876654

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=84.03  E-value=5.9  Score=29.06  Aligned_cols=52  Identities=27%  Similarity=0.376  Sum_probs=46.3

Q ss_pred             HhhhhhHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHhhh
Q psy18096         78 SLIKERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCLI  129 (131)
Q Consensus        78 ~~~~~~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~~~ka~~rrg~a~~  129 (131)
                      -+......++.-++..+.-.++++.++...++.+..||-+.++|.+.-.+|.
T Consensus       147 ~l~e~~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~  198 (280)
T COG3629         147 ALEELFIKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYL  198 (280)
T ss_pred             HHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHH
Confidence            4567888999999999999999999999999999999999999988766654

>smart00386 HAT HAT (Half-A-TPR) repeats

Probab=83.90  E-value=2.9  Score=18.89  Aligned_cols=29  Identities=24%  Similarity=0.303  Sum_probs=24.5

Q ss_pred             CChHHHHHHHHHHHhhCCCCHHHHHHHHH
Q psy18096         98 GSLEPALMSLENVLNLDPNNIKALQRKAK  126 (131)
Q Consensus        98 ~~~~~a~~~~~~al~~dp~~~ka~~rrg~  126 (131)
                      |+++.|...+++++...|.+...|.....
T Consensus         1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~   29 (33)
T smart00386        1 GDIERARKIYERALEKFPKSVELWLKYAE   29 (33)
T ss_pred             CcHHHHHHHHHHHHHHCCCChHHHHHHHH
Confidence            46788999999999999999988877654

Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=83.50  E-value=9.4  Score=24.45  Aligned_cols=23  Identities=48%  Similarity=0.631  Sum_probs=13.4

Q ss_pred             HHHHhCChHHHHHHHHHHHhhCC
Q psy18096         93 AQIKLGSLEPALMSLENVLNLDP  115 (131)
Q Consensus        93 ~~~kl~~~~~a~~~~~~al~~dp  115 (131)
                      ++..+++++.|+..+.+++..+|
T Consensus       139 ~~~~~~~~~~a~~~~~~~~~~~~  161 (291)
T COG0457         139 ALYELGDYEEALELYEKALELDP  161 (291)
T ss_pred             HHHHcCCHHHHHHHHHHHHhcCC
Confidence            55556666666666666555544

>PF01239 PPTA: Protein prenyltransferase alpha subunit repeat; InterPro: IPR002088 Protein prenylation is the posttranslational attachment of either a farnesyl group or a geranylgeranyl group via a thioether linkage (-C-S-C-) to a cysteine at or near the carboxyl terminus of the protein

Probab=83.21  E-value=3.4  Score=19.23  Aligned_cols=26  Identities=27%  Similarity=0.268  Sum_probs=21.5

Q ss_pred             HHHHHHHHHhhCCCCHHHHHHHHHhh
Q psy18096        103 ALMSLENVLNLDPNNIKALQRKAKCL  128 (131)
Q Consensus       103 a~~~~~~al~~dp~~~ka~~rrg~a~  128 (131)
                      .+..+.++|..||+|--+|..|-..+
T Consensus         2 El~~~~~~l~~~pknys~W~yR~~ll   27 (31)
T PF01239_consen    2 ELEFTKKALEKDPKNYSAWNYRRWLL   27 (31)
T ss_dssp             HHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCcccccHHHHHHHHH
Confidence            46788999999999999998875543

Farnesyl and geranylgeranyl groups are polyisoprenes, unsaturated hydrocarbons with a multiple of five carbons; the chain is 15 carbons long in the farnesyl moiety and 20 carbons long in the geranylgeranyl moiety. There are three different protein prenyltransferases in humans: farnesyltransferase (FT) and geranylgeranyltransferase 1 (GGT1) share the same motif (the CaaX box) around the cysteine in their substrates, and are thus called CaaX prenyltransferases, whereas geranylgeranyltransferase 2 (GGT2, also called Rab geranylgeranyltransferase) recognises a different motif and is thus called a non-CaaX prenyltransferase. Protein prenyltransferases are currently known only in eukaryotes, but they are widespread, being found in vertebrates, insects, nematodes, plants, fungi and protozoa, including several parasites. Each protein consists of two subunits, alpha and beta; the alpha subunit of FT and GGT1 is encoded by the same gene, FNTA. The alpha subunit is thought to participate in a stable complex with the isoprenyl substrate; the beta subunit binds the peptide substrate. In the alpha subunits of both types of protein prenyltransferases, seven tetratricopeptide repeats are formed by pairs of helices that are stabilised by conserved intercalating residues. The alpha subunits of GGT2 in mammals and plants also have an immunoglobulin-like domain between the fifth and sixth tetratricopeptide repeat, as well as leucine-rich repeats at the carboxyl terminus. The functions of these additional domains in GGT2 are as yet undefined, but they are apparently not directly involved in the interaction with substrates and Rab escort proteins. The tetratricopeptide repeats of the alpha subunit form a right-handed superhelix, which embraces the (alpha-alpha)6 barrel of the beta subunit []. ; GO: 0008318 protein prenyltransferase activity, 0018342 protein prenylation; PDB: 1S63_A 1LD7_A 1LD8_A 2H6G_A 1SA4_A 1MZC_A 1TN6_A 2F0Y_A 2H6H_A 2H6F_A ....

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=82.41  E-value=4.7  Score=29.55  Aligned_cols=51  Identities=20%  Similarity=0.119  Sum_probs=40.5

Q ss_pred             HHHHHHHHHH--HhhhhhHHHHHHHHHHHHHhCChHH-HHHHHHHHHhhCCCCH
Q psy18096         68 GILASQELLD--SLIKERINCYNNLAQAQIKLGSLEP-ALMSLENVLNLDPNNI  118 (131)
Q Consensus        68 y~~Ai~~~~~--~~~~~~~~~~~N~a~~~~kl~~~~~-a~~~~~~al~~dp~~~  118 (131)
                      |.+|.+.+.+  +.+|..+.++.|++.|...+|+..+ +-+...+.-..+|+++
T Consensus       217 ~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~h~  270 (290)
T PF04733_consen  217 YEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQSNPNHP  270 (290)
T ss_dssp             HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTTSH
T ss_pred             HHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCCCh
Confidence            9999999998  6778889999999999999999955 5556666666888764

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>KOG2376|consensus

Probab=81.89  E-value=6.9  Score=31.69  Aligned_cols=41  Identities=17%  Similarity=0.088  Sum_probs=21.5

Q ss_pred             HHHHHHHHHH-HhhhhhHHHHHHHHHHHHHhCChHHHHHHHH
Q psy18096         68 GILASQELLD-SLIKERINCYNNLAQAQIKLGSLEPALMSLE  108 (131)
Q Consensus        68 y~~Ai~~~~~-~~~~~~~~~~~N~a~~~~kl~~~~~a~~~~~  108 (131)
                      |++|+++... .........++-.|-|..+++..++|+.+.+
T Consensus        62 y~~ALk~ikk~~~~~~~~~~~fEKAYc~Yrlnk~Dealk~~~  103 (652)
T KOG2376|consen   62 YEDALKLIKKNGALLVINSFFFEKAYCEYRLNKLDEALKTLK  103 (652)
T ss_pred             HHHHHHHHHhcchhhhcchhhHHHHHHHHHcccHHHHHHHHh
Confidence            7777755554 1112222223455666666666666666555

>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking

Probab=81.84  E-value=5.8  Score=22.24  Aligned_cols=28  Identities=18%  Similarity=0.071  Sum_probs=21.5

Q ss_pred             HHHHHHHHHHHHhCChHHHHHHHHHHHh
Q psy18096         85 NCYNNLAQAQIKLGSLEPALMSLENVLN  112 (131)
Q Consensus        85 ~~~~N~a~~~~kl~~~~~a~~~~~~al~  112 (131)
                      .-+.+.|.-.-+.|+|.+|+..+.++++
T Consensus         6 ~~~~~~Av~~D~~g~~~~A~~~Y~~ai~   33 (69)
T PF04212_consen    6 IELIKKAVEADEAGNYEEALELYKEAIE   33 (69)
T ss_dssp             HHHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            3456777888888888888888887775

; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....

>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=81.52  E-value=1.5  Score=25.88  Aligned_cols=26  Identities=23%  Similarity=0.081  Sum_probs=18.6

Q ss_pred             HHHHHHHHHHhCChHHHHHHHHHHHh
Q psy18096         87 YNNLAQAQIKLGSLEPALMSLENVLN  112 (131)
Q Consensus        87 ~~N~a~~~~kl~~~~~a~~~~~~al~  112 (131)
                      +.|.|+++-..|++++|+..|.+++.
T Consensus        11 ~I~kaL~~dE~g~~e~Al~~Y~~gi~   36 (79)
T cd02679          11 EISKALRADEWGDKEQALAHYRKGLR   36 (79)
T ss_pred             HHHHHhhhhhcCCHHHHHHHHHHHHH
Confidence            45677777777777777777777665

This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.

>KOG2610|consensus

Probab=81.40  E-value=5.1  Score=30.50  Aligned_cols=48  Identities=17%  Similarity=0.034  Sum_probs=37.9

Q ss_pred             hhhHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHhh
Q psy18096         81 KERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCL  128 (131)
Q Consensus        81 ~~~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~~~ka~~rrg~a~  128 (131)
                      |.++-+..=.|.|....|-|++|.+..+++++++|.+.-|.--++.++
T Consensus       172 p~~sYv~GmyaFgL~E~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVl  219 (491)
T KOG2610|consen  172 PCYSYVHGMYAFGLEECGIYDDAEKQADRALQINRFDCWASHAKAHVL  219 (491)
T ss_pred             cHHHHHHHHHHhhHHHhccchhHHHHHHhhccCCCcchHHHHHHHHHH
Confidence            444555567899999999999999999999999998876655444443

>KOG2376|consensus

Probab=80.60  E-value=8.5  Score=31.21  Aligned_cols=51  Identities=16%  Similarity=0.010  Sum_probs=43.6

Q ss_pred             HHHHHHHHHH-----------------HhhhhhHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCH
Q psy18096         68 GILASQELLD-----------------SLIKERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNI  118 (131)
Q Consensus        68 y~~Ai~~~~~-----------------~~~~~~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~~~  118 (131)
                      |.+|++++.+                 ++......+..-+|-++..+|+-.+|...+...|..+|.+.
T Consensus       191 y~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~~D~  258 (652)
T KOG2376|consen  191 YNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRNPADE  258 (652)
T ss_pred             HHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCCc
Confidence            8888888876                 34566677888999999999999999999999999998664

>KOG1308|consensus

Probab=80.37  E-value=1.5  Score=33.09  Aligned_cols=47  Identities=21%  Similarity=0.104  Sum_probs=42.9

Q ss_pred             HHHHHHHHHH--HhhhhhHHHHHHHHHHHHHhCChHHHHHHHHHHHhhC
Q psy18096         68 GILASQELLD--SLIKERINCYNNLAQAQIKLGSLEPALMSLENVLNLD  114 (131)
Q Consensus        68 y~~Ai~~~~~--~~~~~~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~d  114 (131)
                      ...||+.|+.  ++.++...-|--|+.++.-+|+|.+|-+++..|+++|
T Consensus       164 p~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~dl~~a~kld  212 (377)
T KOG1308|consen  164 PNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHDLALACKLD  212 (377)
T ss_pred             CchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHHHHHHHhcc
Confidence            6788888888  7888888889999999999999999999999999987

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	131
1kt1_A	457	Structure Of The Large Fkbp-Like Protein, Fkbp51, I		3e-06
1kt0_A	457	Structure Of The Large Fkbp-like Protein, Fkbp51, I		8e-06
1qz2_A	336	Crystal Structure Of Fkbp52 C-Terminal Domain Compl		4e-05
1pbk_A	116	Homologous Domain Of Human Fkbp25 Length = 116		7e-05
1p5q_A	336	Crystal Structure Of Fkbp52 C-Terminal Domain Lengt		2e-04
3kz7_A	119	C-Terminal Domain Of Murine Fkbp25 Rapamycin Comple		3e-04
3o5d_A	264	Crystal Structure Of A Fragment Of Fkbp51 Comprisin		8e-04

>pdb|1KT1|A Chain A, Structure Of The Large Fkbp-Like Protein, Fkbp51, Involved In Steroid Receptor Complexes Length = 457

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 38/162 (23%), Positives = 69/162 (42%), Gaps = 32/162 (19%)
Query: 1   MDYVLPLMETGEECQIEITARFGYGDKGEPSKSIPPGAKLYYSLTLHSVLPDFDLAELPV 60
           +D  L  M+  E+C + +  R+G+G+ G+P   I P A+L Y +TL S     +  E+  
Sbjct: 202 IDKALEKMQREEQCILHLGPRYGFGEAGKPKFGIEPNAELIYEVTLKSFEKAKESWEMDT 261
Query: 61  EKRLD------------------------FGGILASQELLDSLIKER--------INCYN 88
           +++L+                        +G I++  E+   L ++         +  + 
Sbjct: 262 KEKLEQAAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFL 321
Query: 89  NLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCLIL 130
           NLA   +KL     A+   +  L LD  N K L R+ +  +L
Sbjct: 322 NLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLL 363

>pdb|1KT0|A Chain A, Structure Of The Large Fkbp-like Protein, Fkbp51, Involved In Steroid Receptor Complexes Length = 457

Iteration: 1
 Score = 45.4 bits (106), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 38/162 (23%), Positives = 69/162 (42%), Gaps = 32/162 (19%)
Query: 1   MDYVLPLMETGEECQIEITARFGYGDKGEPSKSIPPGAKLYYSLTLHSVLPDFDLAELPV 60
           +D  L  M+  E+C + +  R+G+G+ G+P   I P A+L Y +TL S     +  E+  
Sbjct: 202 IDKALEKMQREEQCILYLGPRYGFGEAGKPKFGIEPNAELIYEVTLKSFEKAKESWEMDT 261
Query: 61  EKRLD------------------------FGGILASQELLDSLIKER--------INCYN 88
           +++L+                        +G I++  E+   L ++         +  + 
Sbjct: 262 KEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFL 321
Query: 89  NLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCLIL 130
           NLA   +KL     A+   +  L LD  N K L R+ +  +L
Sbjct: 322 NLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLL 363

>pdb|1QZ2|A Chain A, Crystal Structure Of Fkbp52 C-Terminal Domain Complex With The C-Terminal Peptide Meevd Of Hsp90 Length = 336

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 38/159 (23%), Positives = 62/159 (38%), Gaps = 32/159 (20%)
Query: 1   MDYVLPLMETGEECQIEITARFGYGDKGEPSKSIPPGAKLYYSLTLHSVLPDFDLAELPV 60
           ++  +  ME GE   + +   + +G  G+    IPP A+L Y L L S     +  E+  
Sbjct: 81  LERAIQRMEKGEHSIVYLKPSYAFGSVGKEKFQIPPNAELKYELHLKSFEKAKESWEMNS 140
Query: 61  EKRLD------------------------FGGILASQELLDSLIKE--------RINCYN 88
           E++L+                        +  I++  E   S   E        R+  + 
Sbjct: 141 EEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHL 200
Query: 89  NLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKC 127
           NLA   +KL +   A+ S    L LD NN K L R+ + 
Sbjct: 201 NLAMCHLKLQAFSAAIESCNKALELDSNNEKGLFRRGEA 239

>pdb|1PBK|A Chain A, Homologous Domain Of Human Fkbp25 Length = 116

Iteration: 1
 Score = 42.4 bits (98), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 19/46 (41%), Positives = 26/46 (56%)
Query: 1   MDYVLPLMETGEECQIEITARFGYGDKGEPSKSIPPGAKLYYSLTL 46
            D  L  M  GE+ ++EI   + YG KG+P   IPP AKL + + L
Sbjct: 67  WDEALLTMSKGEKARLEIEPEWAYGKKGQPDAKIPPNAKLTFEVEL 112

>pdb|1P5Q|A Chain A, Crystal Structure Of Fkbp52 C-Terminal Domain Length = 336

Iteration: 1
 Score = 40.4 bits (93), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 37/161 (22%), Positives = 61/161 (37%), Gaps = 32/161 (19%)
Query: 1   MDYVLPLMETGEECQIEITARFGYGDKGEPSKSIPPGAKLYYSLTLHSVLPDFDLAELPV 60
           ++  +   E GE   + +   + +G  G+    IPP A+L Y L L S     +  E   
Sbjct: 81  LERAIQRXEKGEHSIVYLKPSYAFGSVGKEKFQIPPNAELKYELHLKSFEKAKESWEXNS 140
Query: 61  EKRLD------------------------FGGILASQELLDSLIKE--------RINCYN 88
           E++L+                        +  I++  E   S   E        R+  + 
Sbjct: 141 EEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHL 200
Query: 89  NLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCLI 129
           NLA   +KL +   A+ S    L LD NN K L R+ +  +
Sbjct: 201 NLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHL 241

>pdb|3KZ7|A Chain A, C-Terminal Domain Of Murine Fkbp25 Rapamycin Complex Length = 119

Iteration: 1
 Score = 40.0 bits (92), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 18/46 (39%), Positives = 25/46 (54%)
Query: 1   MDYVLPLMETGEECQIEITARFGYGDKGEPSKSIPPGAKLYYSLTL 46
            D  L  M  GE+ ++EI   + YG KG+P   IPP  KL + + L
Sbjct: 70  WDEALLTMSKGEKARLEIEPEWAYGKKGQPDAKIPPNTKLIFEVEL 115

>pdb|3O5D|A Chain A, Crystal Structure Of A Fragment Of Fkbp51 Comprising The Fk1 And Fk2 Domains Length = 264

Iteration: 1
 Score = 38.9 bits (89), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 18/48 (37%), Positives = 29/48 (60%)
Query: 1   MDYVLPLMETGEECQIEITARFGYGDKGEPSKSIPPGAKLYYSLTLHS 48
           +D  L  M+  E+C + +  R+G+G+ G+P   I P A+L Y +TL S
Sbjct: 206 IDKALEKMQREEQCILYLGPRYGFGEAGKPKFGIEPNAELIYEVTLKS 253

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	131
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	2e-23
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	4e-07
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	7e-23
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	4e-18
2d9f_A	135	FK506-binding protein 8 variant; FKBP, rapamycin,	7e-12
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	7e-11
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	1e-10
2jwx_A	157	FKBP38NTD, FK506-binding protein 8 variant; apopto	7e-10
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	6e-09
2awg_A	118	38 kDa FK-506 binding protein; FKBP-type, ppiase,	7e-09
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	8e-09
1q1c_A	280	FK506-binding protein 4; rotamase, TPR repeat, nuc	1e-08
1q1c_A	280	FK506-binding protein 4; rotamase, TPR repeat, nuc	8e-06
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	2e-07
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	3e-07
3kz7_A	119	FK506-binding protein 3; FKPB ppiase rapamycin, is	5e-07
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	5e-07
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	1e-06
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	2e-04
3jxv_A	356	70 kDa peptidyl-prolyl isomerase; FKBP- binding do	6e-07
3jxv_A	356	70 kDa peptidyl-prolyl isomerase; FKBP- binding do	4e-06
3jxv_A	356	70 kDa peptidyl-prolyl isomerase; FKBP- binding do	5e-05
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	6e-07
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	4e-04
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	1e-06
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	2e-04
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	2e-06
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	2e-06
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	3e-06
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	2e-04
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	5e-04
2l6j_A	111	TPR repeat-containing protein associated with HSP;	2e-06
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	2e-06
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	8e-04
2f4e_A	180	ATFKBP42; FKBP-like, alpha-beta, signaling protein	4e-06
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	4e-06
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	3e-04
2pbc_A	102	FK506-binding protein 2; endoplasmic reticulum, is	5e-06
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	7e-06
2vn1_A	129	70 kDa peptidylprolyl isomerase; FKBP, FK506, TPR	2e-05
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	2e-05
3o5q_A	128	Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506	3e-05
1r9h_A	135	FKB-6, FK506 binding protein family; structural ge	3e-05
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	3e-05
3o5e_A	144	Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506	3e-05
2ppn_A	107	FK506-binding protein 1A; high resolution protein	3e-05
1yat_A	113	FK506 binding protein; HET: FK5; 2.50A {Saccharomy	4e-05
2lgo_A	130	FKBP; infectious disease, isomerase, giardiasis, s	9e-05
2gw1_A	514	Mitochondrial precursor proteins import receptor;	1e-04
2gw1_A	514	Mitochondrial precursor proteins import receptor;	6e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-04
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	2e-04
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	2e-04
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	7e-04
3u4t_A	272	TPR repeat-containing protein; structural genomics	3e-04
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	4e-04
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	5e-04
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	5e-04
3b7x_A	134	FK506-binding protein 6; isomerase, repeat, rotama	7e-04
3cn9_A	226	Carboxylesterase; alpha/beta hydrolase fold super-	7e-04
3k9i_A	117	BH0479 protein; putative protein binding protein,	8e-04
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	8e-04
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	8e-04
4dip_A	125	Peptidyl-prolyl CIS-trans isomerase FKBP14; struct	8e-04

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A Length = 457

 Score = 92.8 bits (230), Expect = 2e-23
 Identities = 34/161 (21%), Positives = 60/161 (37%), Gaps = 32/161 (19%)

Query: 1   MDYVLPLMETGEECQIEITARFGYGDKGEPSKSIPPGAKLYYSLTLHSVLPDFDLAELPV 60
           +D  L  M+  E+C + +  R+G+G+ G+P   I P A+L Y +TL S     +  E+  
Sbjct: 202 IDKALEKMQREEQCILYLGPRYGFGEAGKPKFGIEPNAELIYEVTLKSFEKAKESWEMDT 261

Query: 61  E-----------------KRLDFGG---------------ILASQELLDSLIKERINCYN 88
           +                 K   +                    S++   +     +  + 
Sbjct: 262 KEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFL 321

Query: 89  NLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCLI 129
           NLA   +KL     A+   +  L LD  N K L R+ +  +
Sbjct: 322 NLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQL 362

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A Length = 457

 Score = 46.6 bits (110), Expect = 4e-07
 Identities = 15/63 (23%), Positives = 26/63 (41%), Gaps = 1/63 (1%)

Query: 1   MDYVLPLMETGEECQIEITARFGYGDKGEPSKSIPPGAKLYYSLTLHSVLPDFDLAELPV 60
            D  +  M+ GE C +     + YG  G   K IP  A L++ + L     +    +  +
Sbjct: 90  WDIGVATMKRGEICHLLCKPEYAYGSAGSLPK-IPSNATLFFEIELLDFKGEDLFEDGGI 148

Query: 61  EKR 63
            +R
Sbjct: 149 IRR 151

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A Length = 336

 Score = 90.3 bits (224), Expect = 7e-23
 Identities = 37/161 (22%), Positives = 60/161 (37%), Gaps = 32/161 (19%)

Query: 1   MDYVLPLMETGEECQIEITARFGYGDKGEPSKSIPPGAKLYYSLTLHSVLPDFDLAELPV 60
           ++  +  ME GE   + +   + +G  G+    IPP A+L Y L L S     +  E+  
Sbjct: 81  LERAIQRMEKGEHSIVYLKPSYAFGSVGKEKFQIPPNAELKYELHLKSFEKAKESWEMNS 140

Query: 61  EKRLDFGGIL--------------------------------ASQELLDSLIKERINCYN 88
           E++L+   I+                                 S E        R+  + 
Sbjct: 141 EEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHL 200

Query: 89  NLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCLI 129
           NLA   +KL +   A+ S    L LD NN K L R+ +  +
Sbjct: 201 NLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHL 241

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} Length = 338

 Score = 77.4 bits (190), Expect = 4e-18
 Identities = 31/167 (18%), Positives = 56/167 (33%), Gaps = 38/167 (22%)

Query: 1   MDYVLPLMETGEECQIEITARFGYGDKGEPSK-SIPPGAKLYYSLTLHSVLPDF---DLA 56
           +   +  M++GE   + +     YG +G  S  ++PP A L Y + +            +
Sbjct: 109 LAIGVASMKSGERALVHVGWELAYGKEGNFSFPNVPPMADLLYEVEVIGFDETKEGKARS 168

Query: 57  ELPVEKRLDFGGIL----------------------------------ASQELLDSLIKE 82
           ++ VE+R+                                           +  D  +  
Sbjct: 169 DMTVEERIGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAV 228

Query: 83  RINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCLI 129
           +  C+ N+A   IKL   + A+     VL  +  N KAL R+ K   
Sbjct: 229 KNPCHLNIAACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKA 275

>2d9f_A FK506-binding protein 8 variant; FKBP, rapamycin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 135

 Score = 57.7 bits (140), Expect = 7e-12
 Identities = 19/60 (31%), Positives = 29/60 (48%)

Query: 2   DYVLPLMETGEECQIEITARFGYGDKGEPSKSIPPGAKLYYSLTLHSVLPDFDLAELPVE 61
           D  +PLM+ GE   +   +++ YG +G  S  IPP A L   +TL + +   DL      
Sbjct: 74  DLSVPLMDVGETAMVTADSKYCYGPQGSRSPYIPPHAALCLEVTLKTAVDRPDLEMSGPS 133

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} Length = 162

 Score = 55.5 bits (134), Expect = 7e-11
 Identities = 18/58 (31%), Positives = 28/58 (48%)

Query: 72  SQELLDSLIKERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCLI 129
            +     L ++ I  Y N++Q  + +G L  A  +   VL  +  N KAL R+AK  I
Sbjct: 51  GEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARI 108

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 Length = 198

 Score = 55.6 bits (134), Expect = 1e-10
 Identities = 19/66 (28%), Positives = 25/66 (37%)

Query: 64  LDFGGILASQELLDSLIKERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQR 123
                    Q LLD      I+C  NLA    K      A+     VL +D NN+KAL +
Sbjct: 68  FIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYK 127

Query: 124 KAKCLI 129
                +
Sbjct: 128 LGVANM 133

>2jwx_A FKBP38NTD, FK506-binding protein 8 variant; apoptosis, beta barrel, central helix, with flexible N-terminal extension, isomerase; NMR {Homo sapiens} Length = 157

 Score = 52.9 bits (127), Expect = 7e-10
 Identities = 17/48 (35%), Positives = 26/48 (54%)

Query: 2   DYVLPLMETGEECQIEITARFGYGDKGEPSKSIPPGAKLYYSLTLHSV 49
           D  +PLM+ GE   +   +++ YG +G  S  IPP A L   +TL + 
Sbjct: 100 DLSVPLMDVGETAMVTADSKYCYGPQGSRSPYIPPHAALCLEVTLKTA 147

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 148

 Score = 50.0 bits (120), Expect = 6e-09
 Identities = 13/53 (24%), Positives = 26/53 (49%)

Query: 76  LDSLIKERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCL 128
           LD+  +++   + N A   +KL   + A       +  D  ++KAL R+++ L
Sbjct: 57  LDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQAL 109

>2awg_A 38 kDa FK-506 binding protein; FKBP-type, ppiase, BCL-2 inhibitor, SHH signalling antagonist, structural genomics consortium, SGC; 1.60A {Homo sapiens} PDB: 2f2d_A 3ey6_A Length = 118

 Score = 49.2 bits (118), Expect = 7e-09
 Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 1/48 (2%)

Query: 2   DYVLPLMETGEECQIEITARFGYGDKGEPSKSIPPGAKLYYSLTLHSV 49
           D  +PLM+ GE   +   +++ YG +G     IPP A L   +TL + 
Sbjct: 70  DLSVPLMDVGETAMVTADSKYCYGPQGRS-PYIPPHAALCLEVTLKTA 116

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A Length = 370

 Score = 51.3 bits (123), Expect = 8e-09
 Identities = 16/66 (24%), Positives = 30/66 (45%)

Query: 64  LDFGGILASQELLDSLIKERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQR 123
           ++     A       L    ++C  N+   ++K+   + A+ S    L +DP+N KAL R
Sbjct: 253 VEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYR 312

Query: 124 KAKCLI 129
           +A+   
Sbjct: 313 RAQGWQ 318

>1q1c_A FK506-binding protein 4; rotamase, TPR repeat, nuclear protein, phosphorylation, isomerase; 1.90A {Homo sapiens} SCOP: d.26.1.1 d.26.1.1 PDB: 1n1a_A 1rot_A 1rou_A Length = 280

 Score = 51.0 bits (122), Expect = 1e-08
 Identities = 15/49 (30%), Positives = 24/49 (48%)

Query: 1   MDYVLPLMETGEECQIEITARFGYGDKGEPSKSIPPGAKLYYSLTLHSV 49
           ++  +  ME GE   + +   + +G  G+    IPP A+L Y L L S 
Sbjct: 224 LERAIQRMEKGEHSIVYLKPSYAFGSVGKEKFQIPPNAELKYELHLKSF 272

>1q1c_A FK506-binding protein 4; rotamase, TPR repeat, nuclear protein, phosphorylation, isomerase; 1.90A {Homo sapiens} SCOP: d.26.1.1 d.26.1.1 PDB: 1n1a_A 1rot_A 1rou_A Length = 280

 Score = 42.5 bits (100), Expect = 8e-06
 Identities = 16/40 (40%), Positives = 19/40 (47%), Gaps = 1/40 (2%)

Query: 1   MDYVLPLMETGEECQIEITARFGYGDKGEPSKSIPPGAKL 40
            D  +  M+ GE C I     + YG  G P K IPP A L
Sbjct: 110 WDIAIATMKVGEVCHITCKPEYAYGSAGSPPK-IPPNATL 148

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} Length = 126

 Score = 45.7 bits (109), Expect = 2e-07
 Identities = 16/42 (38%), Positives = 20/42 (47%)

Query: 87  YNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCL 128
           Y+N A    KL   + AL   +  + LD   IK   RKA CL
Sbjct: 50  YSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACL 91

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} Length = 126

 Score = 45.0 bits (107), Expect = 3e-07
 Identities = 15/43 (34%), Positives = 20/43 (46%)

Query: 86  CYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCL 128
            Y+N A A  KL S   A+      +  DPN ++A  RKA   
Sbjct: 40  GYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQ 82

>3kz7_A FK506-binding protein 3; FKPB ppiase rapamycin, isomerase, nucleus, phosphoprotein, R isomerase-inhibitor complex; HET: RAP; 1.95A {Mus musculus} PDB: 1pbk_A* Length = 119

 Score = 44.6 bits (106), Expect = 5e-07
 Identities = 16/36 (44%), Positives = 21/36 (58%)

Query: 5   LPLMETGEECQIEITARFGYGDKGEPSKSIPPGAKL 40
           L  M  GE+ ++EI   + YG KG+P   IPP  KL
Sbjct: 74  LLTMSKGEKARLEIEPEWAYGKKGQPDAKIPPNTKL 109

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 46.2 bits (110), Expect = 5e-07
 Identities = 10/44 (22%), Positives = 18/44 (40%)

Query: 86  CYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCLI 129
            Y   A   + +G  + AL  L  V+ L  +   A  ++   L+
Sbjct: 62  AYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLL 105

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 45.1 bits (107), Expect = 1e-06
 Identities = 9/47 (19%), Positives = 20/47 (42%)

Query: 83  RINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCLI 129
            +     +     K      A+     VL ++P+N+ AL+ +A+  +
Sbjct: 294 TVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYL 340

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 38.5 bits (90), Expect = 2e-04
 Identities = 9/42 (21%), Positives = 16/42 (38%)

Query: 87  YNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCL 128
               A+  IK G    A+  L+    L  +N +A  + +   
Sbjct: 180 RELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLY 221

>3jxv_A 70 kDa peptidyl-prolyl isomerase; FKBP- binding domain five-stranded anti-parallel beta-sheet alpha-helix crossing THis sheet; 2.08A {Triticum aestivum} PDB: 3jym_A Length = 356

 Score = 46.0 bits (109), Expect = 6e-07
 Identities = 12/50 (24%), Positives = 21/50 (42%), Gaps = 1/50 (2%)

Query: 1   MDYVLPLMETGEECQIEITARFGYGDKGEPSK-SIPPGAKLYYSLTLHSV 49
           +D  +  M+ GE   + I   + YG         +PP + + Y + L S 
Sbjct: 304 LDRAVLNMKKGEVALVTIPPEYAYGSTESKQDAIVPPNSTVIYEVELVSF 353

>3jxv_A 70 kDa peptidyl-prolyl isomerase; FKBP- binding domain five-stranded anti-parallel beta-sheet alpha-helix crossing THis sheet; 2.08A {Triticum aestivum} PDB: 3jym_A Length = 356

 Score = 43.7 bits (103), Expect = 4e-06
 Identities = 13/50 (26%), Positives = 26/50 (52%), Gaps = 4/50 (8%)

Query: 1   MDYVLPLMETGEECQIEITARFGYGDKGEPSK----SIPPGAKLYYSLTL 46
           +   +  M+ GE+  + +  ++G+G+ G P+     ++PP A L   L L
Sbjct: 182 LAKAVKTMKKGEKVLLAVKPQYGFGEMGRPAAGEGGAVPPNASLVIDLEL 231

>3jxv_A 70 kDa peptidyl-prolyl isomerase; FKBP- binding domain five-stranded anti-parallel beta-sheet alpha-helix crossing THis sheet; 2.08A {Triticum aestivum} PDB: 3jym_A Length = 356

 Score = 40.6 bits (95), Expect = 5e-05
 Identities = 13/42 (30%), Positives = 17/42 (40%), Gaps = 1/42 (2%)

Query: 1   MDYVLPLMETGEECQIEITARFGYGDKGEPSKSIPPGAKLYY 42
            D  +  M+ GE     I     YG+ G P   IP  A L +
Sbjct: 70  WDQGIKTMKKGENALFTIPPELAYGESGSPPT-IPANATLQF 110

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* Length = 137

 Score = 44.6 bits (106), Expect = 6e-07
 Identities = 13/44 (29%), Positives = 19/44 (43%)

Query: 86  CYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCLI 129
            Y N A   +K+   E AL      L LD  ++KA     +C +
Sbjct: 45  YYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQL 88

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* Length = 137

 Score = 36.9 bits (86), Expect = 4e-04
 Identities = 7/44 (15%), Positives = 17/44 (38%)

Query: 87  YNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCLIL 130
           +  L Q Q+++ S + A+ +L+   +L               + 
Sbjct: 80  HFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALR 123

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} Length = 133

 Score = 43.4 bits (103), Expect = 1e-06
 Identities = 16/42 (38%), Positives = 20/42 (47%)

Query: 87  YNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCL 128
           Y+N A    KL   + AL   E  + L+P  IK   RKA  L
Sbjct: 53  YSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAAL 94

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} Length = 133

 Score = 37.6 bits (88), Expect = 2e-04
 Identities = 9/42 (21%), Positives = 17/42 (40%)

Query: 87  YNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCL 128
           Y   A A   +     A+   +  L+LD +  +A     +C+
Sbjct: 87  YTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCM 128

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A Length = 166

 Score = 43.9 bits (104), Expect = 2e-06
 Identities = 11/42 (26%), Positives = 16/42 (38%)

Query: 87  YNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCL 128
           Y N + A ++      AL      + LD   IK   R+A   
Sbjct: 50  YGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASN 91

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 44.6 bits (106), Expect = 2e-06
 Identities = 10/44 (22%), Positives = 18/44 (40%)

Query: 86  CYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCLI 129
            Y   A   + +G  + AL  L  V+ L  +   A  ++   L+
Sbjct: 39  AYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLL 82

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 43.8 bits (104), Expect = 3e-06
 Identities = 9/47 (19%), Positives = 20/47 (42%)

Query: 83  RINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCLI 129
            +     +     K      A+     VL ++P+N+ AL+ +A+  +
Sbjct: 271 TVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYL 317

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 38.4 bits (90), Expect = 2e-04
 Identities = 9/42 (21%), Positives = 16/42 (38%)

Query: 87  YNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCL 128
               A+  IK G    A+  L+    L  +N +A  + +   
Sbjct: 157 RELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLY 198

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 37.3 bits (87), Expect = 5e-04
 Identities = 7/42 (16%), Positives = 18/42 (42%)

Query: 87  YNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCL 128
                   +K G L+ A    + VL  +P+  +  + +++ +
Sbjct: 74  RLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLV 115

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} Length = 111

 Score = 42.7 bits (101), Expect = 2e-06
 Identities = 12/44 (27%), Positives = 15/44 (34%)

Query: 87  YNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCLIL 130
           Y+N A A IKLG    A+   +  L           R      L
Sbjct: 41  YSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQYRL 84

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 Length = 118

 Score = 42.6 bits (101), Expect = 2e-06
 Identities = 13/43 (30%), Positives = 19/43 (44%)

Query: 86  CYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCL 128
            Y+N + A  K G  + A       ++L P+  K   RKA  L
Sbjct: 40  LYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL 82

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 Length = 118

 Score = 35.6 bits (83), Expect = 8e-04
 Identities = 10/41 (24%), Positives = 15/41 (36%)

Query: 87  YNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKC 127
           Y+  A A   L   E A  + E  L  + NN +  +     
Sbjct: 75  YSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNM 115

>2f4e_A ATFKBP42; FKBP-like, alpha-beta, signaling protein; 2.32A {Arabidopsis thaliana} Length = 180

 Score = 42.9 bits (101), Expect = 4e-06
 Identities = 15/69 (21%), Positives = 31/69 (44%), Gaps = 4/69 (5%)

Query: 1   MDYVLPLMETGEECQIEITARFGYGDKGEPS-KSIPPGAKLYYSLTLHSVLPDFDLA--- 56
           +   +  M++GE   + +     YG +G  S  ++PP A L Y + +       +     
Sbjct: 109 LAIGVASMKSGERALVHVGWELAYGKEGNFSFPNVPPMADLLYEVEVIGFDETKEGKARS 168

Query: 57  ELPVEKRLD 65
           ++ VE+R+ 
Sbjct: 169 DMTVEERIG 177

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Length = 131

 Score = 42.2 bits (100), Expect = 4e-06
 Identities = 14/42 (33%), Positives = 19/42 (45%)

Query: 87  YNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCL 128
           + N A A  KLG+   A+   E  + +DP   KA  R    L
Sbjct: 49  FCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLAL 90

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Length = 131

 Score = 37.2 bits (87), Expect = 3e-04
 Identities = 9/41 (21%), Positives = 13/41 (31%)

Query: 87  YNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKC 127
           Y  +  A   L     A+   +  L LDP+N          
Sbjct: 83  YGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIA 123

>2pbc_A FK506-binding protein 2; endoplasmic reticulum, isomerase, polymorphism, rotamase, structural genomics, structural genomics consortium, SGC; 1.80A {Homo sapiens} Length = 102

 Score = 41.4 bits (98), Expect = 5e-06
 Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 1/51 (1%)

Query: 5   LPLMETGEECQIEITARFGYGDKGEPSKSIPPGAKLYYSLTLHSVLPDFDL 55
           L  M  GE+ ++ I +  GYG++G P K IP GA L + + L  +    +L
Sbjct: 53  LLGMCEGEKRKLVIPSELGYGERGAPPK-IPGGATLVFEVELLKIERRTEL 102

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 Length = 281

 Score = 43.0 bits (101), Expect = 7e-06
 Identities = 13/43 (30%), Positives = 19/43 (44%)

Query: 87  YNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCLI 129
           Y N A   +K+   E AL      L LD  ++KA     +C +
Sbjct: 41  YTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQL 83

>2vn1_A 70 kDa peptidylprolyl isomerase; FKBP, FK506, TPR repeat; HET: FK5; 2.35A {Plasmodium falciparum} PDB: 2ofn_A 2ki3_A 3ihz_A* 3ni6_A 3pa7_A Length = 129

 Score = 40.7 bits (96), Expect = 2e-05
 Identities = 12/36 (33%), Positives = 19/36 (52%), Gaps = 1/36 (2%)

Query: 5   LPLMETGEECQIEITARFGYGDKGEPSKSIPPGAKL 40
           +  M   E+C + I + +GYGD+G     IP  + L
Sbjct: 82  VSSMRKNEKCLVRIESMYGYGDEGCGES-IPGNSVL 116

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} Length = 164

 Score = 41.3 bits (97), Expect = 2e-05
 Identities = 12/42 (28%), Positives = 14/42 (33%)

Query: 87  YNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCL 128
            +N A A    G  E A    E    +DP   KA  R     
Sbjct: 48  LSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLAR 89

>3o5q_A Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506 binding domain, HSP90 cochaperone, immunophiline, PEP prolyl isomerase; 0.96A {Homo sapiens} PDB: 3o5m_A 3o5l_A 3o5o_A 3o5p_A 3o5r_A* 4drq_A* 3o5j_A 3o5g_A 3o5i_A 3o5k_A Length = 128

 Score = 39.9 bits (94), Expect = 3e-05
 Identities = 12/36 (33%), Positives = 16/36 (44%), Gaps = 1/36 (2%)

Query: 5   LPLMETGEECQIEITARFGYGDKGEPSKSIPPGAKL 40
           +  M+ GE C +     + YG  G   K IP  A L
Sbjct: 82  VATMKKGEICHLLCKPEYAYGSAGSLPK-IPSNATL 116

>1r9h_A FKB-6, FK506 binding protein family; structural genomics, peptidylprolyl isomerase, PSI, protein structure initiative; 1.80A {Caenorhabditis elegans} SCOP: d.26.1.1 Length = 135

 Score = 40.0 bits (94), Expect = 3e-05
 Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 1/36 (2%)

Query: 5   LPLMETGEECQIEITARFGYGDKGEPSKSIPPGAKL 40
           +  M  GE  +  I + +GYGD G P K IP GA L
Sbjct: 77  VATMTKGEVAEFTIRSDYGYGDAGSPPK-IPGGATL 111

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 40.6 bits (96), Expect = 3e-05
 Identities = 15/42 (35%), Positives = 20/42 (47%)

Query: 87  YNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCL 128
           Y+N A A  KL S   A+      +  DPN ++A  RKA   
Sbjct: 176 YSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQ 217

>3o5e_A Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506 binding domain, HSP90 cochaperone, immunophiline, PEP prolyl isomerase; 1.60A {Homo sapiens} PDB: 3o5f_A Length = 144

 Score = 40.0 bits (94), Expect = 3e-05
 Identities = 12/36 (33%), Positives = 16/36 (44%), Gaps = 1/36 (2%)

Query: 5   LPLMETGEECQIEITARFGYGDKGEPSKSIPPGAKL 40
           +  M+ GE C +     + YG  G   K IP  A L
Sbjct: 98  VATMKKGEICHLLCKPEYAYGSAGSLPK-IPSNATL 132

>2ppn_A FK506-binding protein 1A; high resolution protein structure, isomerase; 0.92A {Homo sapiens} SCOP: d.26.1.1 PDB: 1b6c_A 1a7x_A 1d7h_A 1d7i_A 1d7j_A* 1f40_A* 1fap_A* 1d6o_A* 1fkd_A* 1fkf_A* 1fkg_A* 1fkh_A* 1fki_A* 1fkj_A* 1fkr_A 1fks_A 1fkt_A 1j4h_A* 1j4i_A* 1j4r_A* ... Length = 107

 Score = 39.1 bits (92), Expect = 3e-05
 Identities = 12/36 (33%), Positives = 18/36 (50%), Gaps = 1/36 (2%)

Query: 5  LPLMETGEECQIEITARFGYGDKGEPSKSIPPGAKL 40
          +  M  G+  ++ I+  + YG  G P   IPP A L
Sbjct: 63 VAQMSVGQRAKLTISPDYAYGATGHPGI-IPPHATL 97

>1yat_A FK506 binding protein; HET: FK5; 2.50A {Saccharomyces cerevisiae} SCOP: d.26.1.1 Length = 113

 Score = 39.1 bits (92), Expect = 4e-05
 Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 1/45 (2%)

Query: 5   LPLMETGEECQIEITARFGYGDKGEPSKSIPPGAKLYYSLTLHSV 49
           +P +  GE+ ++ I   + YG +G P   IPP + L + + L  V
Sbjct: 69  IPKLSVGEKARLTIPGPYAYGPRGFPGL-IPPNSTLVFDVELLKV 112

>2lgo_A FKBP; infectious disease, isomerase, giardiasis, ssgcid, structura genomics, seattle structural genomics center for infectious; NMR {Giardia lamblia} Length = 130

 Score = 38.4 bits (90), Expect = 9e-05
 Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 1/45 (2%)

Query: 5   LPLMETGEECQIEITARFGYGDKGEPSKSIPPGAKLYYSLTLHSV 49
           +  M  GE+    I  +  YG++G P   IPP A L + + L +V
Sbjct: 87  VATMTLGEKALFTIPYQLAYGERGYPPV-IPPKATLVFEVELLAV 130

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 39.7 bits (93), Expect = 1e-04
 Identities = 12/42 (28%), Positives = 20/42 (47%)

Query: 87  YNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCL 128
           Y+NL+   + +G L+  +      L L P+  K L R+A   
Sbjct: 42  YSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASAN 83

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 37.4 bits (87), Expect = 6e-04
 Identities = 9/49 (18%), Positives = 15/49 (30%)

Query: 80  IKERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCL 128
           +  R+N Y  +A                +  L LD NN      + +  
Sbjct: 266 LFPRVNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMN 314

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 39.5 bits (91), Expect = 1e-04
 Identities = 19/121 (15%), Positives = 35/121 (28%), Gaps = 25/121 (20%)

Query: 14  CQIEITARF--------GYGDKGEPSKSIPPGAKLYYSLTLHSVLPDFDLAELPVEKRLD 65
           C+I +T RF                              +L     D    +LP E    
Sbjct: 266 CKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPRE---- 321

Query: 66  FGGILASQELLDSLI----KERINCYNNLAQAQIKLGSLEPAL-MSLENVLNLDPNNIKA 120
              +L +     S+I    ++ +  ++N          L   +  SL     L+P   + 
Sbjct: 322 ---VLTTNPRRLSIIAESIRDGLATWDNWKHVNCD--KLTTIIESSLN---VLEPAEYRK 373

Query: 121 L 121
           +
Sbjct: 374 M 374

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121

 Score = 37.8 bits (88), Expect = 2e-04
 Identities = 9/43 (20%), Positives = 17/43 (39%)

Query: 87  YNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCLI 129
           + +L   Q +      A+++L +   LDP +I      A    
Sbjct: 54  WRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHT 96

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 38.9 bits (91), Expect = 2e-04
 Identities = 13/42 (30%), Positives = 21/42 (50%)

Query: 87  YNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCL 128
           Y+N++   I  G LE  +      L + P++ KAL R+A   
Sbjct: 62  YSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASAN 103

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 37.0 bits (86), Expect = 7e-04
 Identities = 6/49 (12%), Positives = 15/49 (30%)

Query: 80  IKERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCL 128
           +    N Y  LA       + +      +  ++L+P        + +  
Sbjct: 272 LHPTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMY 320

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 38.0 bits (89), Expect = 3e-04
 Identities = 12/45 (26%), Positives = 17/45 (37%)

Query: 84  INCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCL 128
           I     +A           A  + +N+L LDP N KA+      L
Sbjct: 221 IEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMKL 265

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 37.9 bits (88), Expect = 4e-04
 Identities = 7/42 (16%), Positives = 9/42 (21%)

Query: 87  YNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCL 128
              L  A    G  E A  +      L P       +     
Sbjct: 94  ALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWR 135

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 37.5 bits (87), Expect = 5e-04
 Identities = 11/43 (25%), Positives = 16/43 (37%)

Query: 86  CYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCL 128
            + NL  A  KL   + A+ +L   L L  N+       A   
Sbjct: 518 TWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVY 560

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 37.0 bits (86), Expect = 5e-04
 Identities = 12/47 (25%), Positives = 21/47 (44%)

Query: 84  INCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCLIL 130
           ++C    A+ Q+  G  + AL   E +L L+ +N+ A         L
Sbjct: 88  VDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYL 134

>3b7x_A FK506-binding protein 6; isomerase, repeat, rotamase, TPR repeat, williams-beuren syndrome, structural genomics consortium, SGC; 2.10A {Homo sapiens} Length = 134

 Score = 36.1 bits (84), Expect = 7e-04
 Identities = 11/36 (30%), Positives = 14/36 (38%), Gaps = 1/36 (2%)

Query: 5   LPLMETGEECQIEITARFGYGDKGEPSKSIPPGAKL 40
           L  M  GE  +      + YG  G P   IPP   +
Sbjct: 89  LLSMRRGELARFLFKPNYAYGTLGCPPL-IPPNTTV 123

>3cn9_A Carboxylesterase; alpha/beta hydrolase fold super-family, hydrolase; HET: 2PE; 2.09A {Pseudomonas aeruginosa} PDB: 3cn7_A* Length = 226

 Score = 36.6 bits (85), Expect = 7e-04
 Identities = 11/70 (15%), Positives = 26/70 (37%), Gaps = 3/70 (4%)

Query: 53  FDLAELPVEKRLDFGGILASQELLDSLIKERINCYNNLAQAQIKLGSL-EPALMSLENVL 111
           +D+      + +D   + AS + + +LI E+      +A  +I L    +   + L    
Sbjct: 78  YDILAFSPARAIDEDQLNASADQVIALIDEQRA--KGIAAERIILAGFSQGGAVVLHTAF 135

Query: 112 NLDPNNIKAL 121
                 +  +
Sbjct: 136 RRYAQPLGGV 145

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117

 Score = 35.8 bits (83), Expect = 8e-04
 Identities = 12/47 (25%), Positives = 15/47 (31%)

Query: 82  ERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCL 128
           +   CY  L      LG    A   L N +   PN+       A  L
Sbjct: 25  DLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVL 71

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 36.8 bits (86), Expect = 8e-04
 Identities = 11/42 (26%), Positives = 18/42 (42%)

Query: 87  YNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCL 128
           ++NLA    + G L+ ALM  +  + + P    A       L
Sbjct: 342 HSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTL 383

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100

 Score = 35.3 bits (82), Expect = 8e-04
 Identities = 10/42 (23%), Positives = 16/42 (38%)

Query: 87  YNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCL 128
              LAQ  +K  +   AL   E ++  DP+ +       K  
Sbjct: 10  RYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLY 51

>4dip_A Peptidyl-prolyl CIS-trans isomerase FKBP14; structural genomics, structural genomics consortium, SGC, PE prolyl CIS-trans isomerase; 1.82A {Homo sapiens} Length = 125

 Score = 35.7 bits (83), Expect = 8e-04
 Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 2/45 (4%)

Query: 5   LPLMETGEECQIEITARFGYGDKGEPSKSIPPGAKLYYSLTLHSV 49
           L  M  GE+ ++ I    GYG +G+    IPP + L +++ L  +
Sbjct: 79  LKGMCVGEKRKLIIPPALGYGKEGKG--KIPPESTLIFNIDLLEI 121

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	131
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	99.91
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	99.89
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	99.89
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	99.63
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	99.49
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	99.48
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	99.45
2f4e_A	180	ATFKBP42; FKBP-like, alpha-beta, signaling protein	99.38
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	99.36
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	99.34
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	99.33
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	99.3
2l6j_A	111	TPR repeat-containing protein associated with HSP;	99.23
3kz7_A	119	FK506-binding protein 3; FKPB ppiase rapamycin, is	99.22
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	99.22
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	99.2
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.19
2d9f_A	135	FK506-binding protein 8 variant; FKBP, rapamycin,	99.17
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	99.14
3o5e_A	144	Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506	99.14
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	99.14
4dip_A	125	Peptidyl-prolyl CIS-trans isomerase FKBP14; struct	99.14
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	99.14
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	99.11
1jvw_A	167	Macrophage infectivity potentiator; chagas disease	99.11
2pbc_A	102	FK506-binding protein 2; endoplasmic reticulum, is	99.1
3o5q_A	128	Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506	99.1
3b7x_A	134	FK506-binding protein 6; isomerase, repeat, rotama	99.09
2ppn_A	107	FK506-binding protein 1A; high resolution protein	99.08
2vn1_A	129	70 kDa peptidylprolyl isomerase; FKBP, FK506, TPR	99.08
2jwx_A	157	FKBP38NTD, FK506-binding protein 8 variant; apopto	99.08
2awg_A	118	38 kDa FK-506 binding protein; FKBP-type, ppiase,	99.08
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	99.07
1q1c_A	280	FK506-binding protein 4; rotamase, TPR repeat, nuc	99.07
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	99.06
1yat_A	113	FK506 binding protein; HET: FK5; 2.50A {Saccharomy	99.06
3k9i_A	117	BH0479 protein; putative protein binding protein,	99.05
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.05
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.04
2lgo_A	130	FKBP; infectious disease, isomerase, giardiasis, s	99.04
2y78_A	133	Peptidyl-prolyl CIS-trans isomerase; MIP, ppiase,	99.04
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	99.03
3oe2_A	219	Peptidyl-prolyl CIS-trans isomerase; FKBP, ppiase,	99.03
1r9h_A	135	FKB-6, FK506 binding protein family; structural ge	99.02
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	99.02
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.01
3jxv_A	356	70 kDa peptidyl-prolyl isomerase; FKBP- binding do	98.96
1fd9_A	213	Protein (macrophage infectivity potentiator prote;	98.96
3uf8_A	209	Ubiquitin-like protein SMT3, peptidyl-prolyl CIS-	98.94
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	98.93
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	98.92
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	98.91
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	98.91
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	98.9
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	98.89
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	98.87
1q6h_A	224	FKBP-type peptidyl-prolyl CIS-trans isomerase FKP;	98.86
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	98.86
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	98.86
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	98.85
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	98.84
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	98.83
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	98.83
2kat_A	115	Uncharacterized protein; NESG, structure, structur	98.83
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	98.82
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	98.81
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	98.8
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	98.8
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	98.79
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	98.79
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	98.79
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	98.77
1q1c_A	280	FK506-binding protein 4; rotamase, TPR repeat, nuc	98.77
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	98.75
1u79_A	129	FKBP-type peptidyl-prolyl CIS-trans isomerase 3; T	98.75
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	98.75
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	98.74
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	98.73
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	98.73
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	98.71
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	98.7
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	98.7
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	98.7
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	98.69
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	98.69
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	98.68
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	98.68
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	98.68
3jxv_A	356	70 kDa peptidyl-prolyl isomerase; FKBP- binding do	98.68
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	98.68
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	98.68
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	98.68
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	98.67
2lkn_A	165	AH receptor-interacting protein; FKBP-type domain,	98.65
1pc2_A	152	Mitochondria fission protein; unknown function; NM	98.64
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	98.63
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	98.63
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	98.61
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	98.61
2gw1_A	514	Mitochondrial precursor proteins import receptor;	98.61
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	98.58
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	98.58
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	98.58
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	98.58
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	98.58
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	98.57
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	98.57
3k9i_A	117	BH0479 protein; putative protein binding protein,	98.57
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	98.56
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	98.55
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	98.55
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	98.54
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	98.54
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	98.53
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	98.53
2l6j_A	111	TPR repeat-containing protein associated with HSP;	98.5
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	98.49
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	98.49
3u4t_A	272	TPR repeat-containing protein; structural genomics	98.48
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	98.47
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	98.46
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	98.46
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	98.45
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	98.45
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	98.44
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	98.44
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	98.44
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	98.43
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	98.43
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	98.42
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	98.41
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	98.41
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	98.4
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	98.4
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	98.38
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	98.38
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	98.38
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	98.37
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	98.37
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	98.35
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	98.35
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	98.35
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	98.33
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	98.32
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	98.3
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	98.29
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	98.28
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	98.27
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	98.26
2kat_A	115	Uncharacterized protein; NESG, structure, structur	98.26
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	98.25
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	98.25
3u4t_A	272	TPR repeat-containing protein; structural genomics	98.24
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	98.24
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	98.23
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	98.23
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	98.23
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	98.23
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	98.2
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	98.2
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	98.2
4g1t_A	472	Interferon-induced protein with tetratricopeptide	98.18
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	98.18
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	98.18
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	98.14
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	98.13
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	98.12
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	98.11
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	98.08
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	98.08
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	98.03
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	98.02
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	98.02
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	98.01
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	98.0
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	97.98
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	97.97
4g1t_A	472	Interferon-induced protein with tetratricopeptide	97.97
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	97.97
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	97.95
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	97.95
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	97.95
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	97.95
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	97.92
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	97.87
2gw1_A	514	Mitochondrial precursor proteins import receptor;	97.87
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	97.87
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	97.87
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	97.85
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	97.79
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	97.78
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	97.75
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	97.73
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	97.72
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	97.71
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	97.69
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	97.68
1hxv_A	113	Trigger factor; FKBP fold, ppiase, chaperone; NMR	97.67
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	97.64
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	97.63
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	97.63
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	97.62
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	97.62
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	97.62
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	97.6
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	97.6
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	97.56
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	97.55
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	97.53
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	97.52
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	97.51
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	97.47
1klx_A	138	Cysteine rich protein B; structural genomics, heli	97.46
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	97.44
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	97.38
3pr9_A	157	FKBP-type peptidyl-prolyl CIS-trans isomerase; FKB	97.38
3cgm_A	158	SLYD, peptidyl-prolyl CIS-trans isomerase; chapero	97.29
1ix5_A	151	FKBP; ppiase, isomerase; NMR {Methanothermococcust	97.24
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	97.23
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	97.22
4dt4_A	169	FKBP-type 16 kDa peptidyl-prolyl CIS-trans isomer;	97.22
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	97.21
2kr7_A	151	FKBP-type peptidyl-prolyl CIS-trans isomerase SLY;	97.21
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	97.14
2k8i_A	171	SLYD, peptidyl-prolyl CIS-trans isomerase; ppiase,	97.11
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	97.09
3prb_A	231	FKBP-type peptidyl-prolyl CIS-trans isomerase; cha	97.09
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	97.08
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	97.04
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	97.03
2kfw_A	196	FKBP-type peptidyl-prolyl CIS-trans isomerase SLYD	97.02
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	96.97
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	96.92
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	96.82
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	96.81
1klx_A	138	Cysteine rich protein B; structural genomics, heli	96.8
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	96.77
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	96.75
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	96.66
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	96.64
1w26_A	432	Trigger factor, TF; chaperone, protein folding, ri	96.49
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	96.32
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	96.29
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	96.12
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	96.03
1pc2_A	152	Mitochondria fission protein; unknown function; NM	96.0
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	95.87
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	95.73
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	95.42
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	95.27
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	95.03
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	94.82
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	94.77
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	94.52
1t11_A	392	Trigger factor, TF; helix-turn-helix, four-helix-b	93.95
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	93.32
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	92.81
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	91.2
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	90.3
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	89.55
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	87.86
2crb_A	97	Nuclear receptor binding factor 2; NRBF-2, MIT dom	87.44
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	85.21
2br9_A	234	14-3-3E, 14-3-3 protein epsilon; cell regulator pr	81.59
1zbp_A	273	Hypothetical protein VPA1032; alpha-beta protein,	81.17

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=99.91  E-value=1.6e-23  Score=153.10  Aligned_cols=130  Identities=24%  Similarity=0.309  Sum_probs=111.6

Q ss_pred             CcchhcccCCCcEEEEEEcCCCCCCCCCCC-CCCCCCCceEEEEEeeccccCCc---cCcCcchhhhHHHH---------
Q psy18096          1 MDYVLPLMETGEECQIEITARFGYGDKGEP-SKSIPPGAKLYYSLTLHSVLPDF---DLAELPVEKRLDFG---------   67 (131)
Q Consensus         1 ld~~l~~M~~gE~~~v~i~~~~ayG~~G~~-~~~ip~~~~~~~~v~l~~~~~~~---~~~~~~~~e~~~~~---------   67 (131)
                      +|.+|.+|++||++.|+|+|.++||..|.+ .+.||+++++.|.++|.++....   ..|.+...++...+         
T Consensus       109 ~e~~l~~m~~Ge~~~~~i~~~~~yg~~~~~~~~~ip~~~~l~f~v~L~~~~~~~e~~~~~~~~~~~~~~~a~~~~~~g~~  188 (338)
T 2if4_A          109 LAIGVASMKSGERALVHVGWELAYGKEGNFSFPNVPPMADLLYEVEVIGFDETKEGKARSDMTVEERIGAADRRKMDGNS  188 (338)
T ss_dssp             HHHHHHHCCBTCEEEEEECGGGSSCSSCCCSSSCCCTTCCEEEEEEEEEEECCCCCBTTTBCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhcCCCCCeEEEEECHHHhcCCCCCCCCCCCCCCCcEEEEEEEEEecCCccccccccCCHHHHHHHHHHHHHHHHH
Confidence            367999999999999999999999999963 26799999999999999987654   36777776665543         


Q ss_pred             ------HHHHHHHHHH--HhhhhhH-----------------HHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHH
Q psy18096         68 ------GILASQELLD--SLIKERI-----------------NCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQ  122 (131)
Q Consensus        68 ------y~~Ai~~~~~--~~~~~~~-----------------~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~~~ka~~  122 (131)
                            |.+|+..|.+  .+.+...                 .+|+|+|.||+++++|++|+.+|+++|+++|++.++||
T Consensus       189 ~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~  268 (338)
T 2if4_A          189 LFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLTEEEKNPKALF  268 (338)
T ss_dssp             TCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             HHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence                  8889988888  4444443                 48999999999999999999999999999999999999


Q ss_pred             HHHHhhhc
Q psy18096        123 RKAKCLIL  130 (131)
Q Consensus       123 rrg~a~~~  130 (131)
                      ++|.+|..
T Consensus       269 ~lg~a~~~  276 (338)
T 2if4_A          269 RRGKAKAE  276 (338)
T ss_dssp             HHHHHHHT
T ss_pred             HHHHHHHH
Confidence            99999874

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=99.89  E-value=7.4e-23  Score=154.89  Aligned_cols=130  Identities=28%  Similarity=0.460  Sum_probs=115.9

Q ss_pred             CcchhcccCCCcEEEEEEcCCCCCCCCCCCCCCCCCCceEEEEEeeccccCCccCcCcchhhhHH-------HH------
Q psy18096          1 MDYVLPLMETGEECQIEITARFGYGDKGEPSKSIPPGAKLYYSLTLHSVLPDFDLAELPVEKRLD-------FG------   67 (131)
Q Consensus         1 ld~~l~~M~~gE~~~v~i~~~~ayG~~G~~~~~ip~~~~~~~~v~l~~~~~~~~~~~~~~~e~~~-------~~------   67 (131)
                      +|.|+..|+.||++.|.++|.|+||..|.+...|||++.+.|.+++.++.+....|.+....+..       .|      
T Consensus       202 ~e~al~~~~~ge~~~l~i~P~~ay~~~g~~~~~ip~~~~l~y~~~l~~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~  281 (457)
T 1kt0_A          202 IDKALEKMQREEQCILYLGPRYGFGEAGKPKFGIEPNAELIYEVTLKSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKG  281 (457)
T ss_dssp             HHHHHTTCCBTCEEEEEECGGGTTCSSCBGGGTBCTTCCEEEEEEEEEEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHhCCCCCEEEEEECcccccCCCCCcccCCCCCCEEEEEhhhhhcccCcchhhcCHHHHHHHHHHHHHHHHHHHhC
Confidence            47899999999999999999999999998666899999999999999999999888877655433       22      


Q ss_pred             --HHHHHHHHHH--Hhhhhh---------------HHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHhh
Q psy18096         68 --GILASQELLD--SLIKER---------------INCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCL  128 (131)
Q Consensus        68 --y~~Ai~~~~~--~~~~~~---------------~~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~~~ka~~rrg~a~  128 (131)
                        |.+|+..|++  ++.|..               ..+|+|+|.||+++++|++|+.+|++||+++|++.++||++|.+|
T Consensus       282 g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~  361 (457)
T 1kt0_A          282 GKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQ  361 (457)
T ss_dssp             TCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHH
Confidence              8999999988  545554               799999999999999999999999999999999999999999998


Q ss_pred             hc
Q psy18096        129 IL  130 (131)
Q Consensus       129 ~~  130 (131)
                      ..
T Consensus       362 ~~  363 (457)
T 1kt0_A          362 LL  363 (457)
T ss_dssp             HH
T ss_pred             HH
Confidence            64

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=99.89  E-value=1.6e-22  Score=147.55  Aligned_cols=130  Identities=28%  Similarity=0.405  Sum_probs=114.2

Q ss_pred             CcchhcccCCCcEEEEEEcCCCCCCCCCCCCCCCCCCceEEEEEeeccccCCccCcCcchhhhHH-------HH------
Q psy18096          1 MDYVLPLMETGEECQIEITARFGYGDKGEPSKSIPPGAKLYYSLTLHSVLPDFDLAELPVEKRLD-------FG------   67 (131)
Q Consensus         1 ld~~l~~M~~gE~~~v~i~~~~ayG~~G~~~~~ip~~~~~~~~v~l~~~~~~~~~~~~~~~e~~~-------~~------   67 (131)
                      +|.||..|++||++.|.++|.++||..|.+...||+++.+.|+++|.++.+....+.........       .|      
T Consensus        81 ~e~al~~~~~Ge~~~l~i~p~~ayg~~g~~~~~i~~~~~l~f~~~L~~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~  160 (336)
T 1p5q_A           81 LERAIQRMEKGEHSIVYLKPSYAFGSVGKEKFQIPPNAELKYELHLKSFEKAKESWEMNSEEKLEQSTIVKERGTVYFKE  160 (336)
T ss_dssp             HHHHHTTCCTTCEEEEEECTTTTTTTTCBGGGTBCSSCCEEEEEEEEEEECCCCGGGCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhcCCCCCeEEEEECCccccCcCCCCccCCCCCCeEEEEEEEeecccccchhcCCHHHHHHHHHHHHHHHHHHHHC
Confidence            36899999999999999999999999997655799999999999999999988877776544332       22      


Q ss_pred             --HHHHHHHHHH--Hhhhhh---------------HHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHhh
Q psy18096         68 --GILASQELLD--SLIKER---------------INCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCL  128 (131)
Q Consensus        68 --y~~Ai~~~~~--~~~~~~---------------~~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~~~ka~~rrg~a~  128 (131)
                        |.+|+..|++  ++.|..               ..+++|+|.||+++|+|++|+.+|+++|+++|++.++|+++|.++
T Consensus       161 g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~  240 (336)
T 1p5q_A          161 GKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAH  240 (336)
T ss_dssp             TCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence              8999999988  555555               799999999999999999999999999999999999999999998


Q ss_pred             hc
Q psy18096        129 IL  130 (131)
Q Consensus       129 ~~  130 (131)
                      ..
T Consensus       241 ~~  242 (336)
T 1p5q_A          241 LA  242 (336)
T ss_dssp             HH
T ss_pred             HH
Confidence            64

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=99.63  E-value=3.3e-16  Score=118.44  Aligned_cols=129  Identities=17%  Similarity=0.224  Sum_probs=99.7

Q ss_pred             CcchhcccCCCcEEEEEEcCCCCCCCCCCCCCCCCCCceEEEEEeeccccCCcc---------------CcC--cc----
Q psy18096          1 MDYVLPLMETGEECQIEITARFGYGDKGEPSKSIPPGAKLYYSLTLHSVLPDFD---------------LAE--LP----   59 (131)
Q Consensus         1 ld~~l~~M~~gE~~~v~i~~~~ayG~~G~~~~~ip~~~~~~~~v~l~~~~~~~~---------------~~~--~~----   59 (131)
                      +|.+|.+|++||++.|+|+|.++||..|.| +.|||++++.|+|+|.++.....               .+.  ..    
T Consensus        90 ~~~~l~~m~~Ge~~~~~i~~~~~yg~~g~~-~~i~~~~~l~~~v~l~~~~~~~~~~dg~~~k~i~~~g~~~~~p~~g~~V  168 (457)
T 1kt0_A           90 WDIGVATMKRGEICHLLCKPEYAYGSAGSL-PKIPSNATLFFEIELLDFKGEDLFEDGGIIRRTKRKGEGYSNPNEGATV  168 (457)
T ss_dssp             HHHHHTTCCTTCEEEEEECGGGTTTTTCBT-TTBCTTCCEEEEEEEEEEECEETTSSSSEEEEEEECCBCSCCCCTTCEE
T ss_pred             HHHHHhhCCCCCEEEEEEChHHhccccCCC-CCCCCCCcEEEEEeeceeecccccCCcceEEEEEecCCCCCCCCCCCEE
Confidence            478999999999999999999999999975 68999999999999998754200               000  00    


Q ss_pred             ----------------------h---hhhHHHHHHHHHHHHH--------------------------------------
Q psy18096         60 ----------------------V---EKRLDFGGILASQELL--------------------------------------   76 (131)
Q Consensus        60 ----------------------~---~e~~~~~y~~Ai~~~~--------------------------------------   76 (131)
                                            +   ...+-.++..|+..++                                      
T Consensus       169 ~v~y~g~~~g~~f~~~~~~f~~g~g~~~~v~~~~e~al~~~~~ge~~~l~i~P~~ay~~~g~~~~~ip~~~~l~y~~~l~  248 (457)
T 1kt0_A          169 EIHLEGRCGGRMFDCRDVAFTVGEGEDHDIPIGIDKALEKMQREEQCILYLGPRYGFGEAGKPKFGIEPNAELIYEVTLK  248 (457)
T ss_dssp             EEEEEEEETTEEEEEEEEEEETTCGGGGTCCHHHHHHHTTCCBTCEEEEEECGGGTTCSSCBGGGTBCTTCCEEEEEEEE
T ss_pred             EEEEEEEeCCeEEecCceEEEeCCCccccCChHHHHHHHhCCCCCEEEEEECcccccCCCCCcccCCCCCCEEEEEhhhh
Confidence                                  0   0001112444444332                                      


Q ss_pred             ----------H--HhhhhhHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCC---------------HHHHHHHHHhhh
Q psy18096         77 ----------D--SLIKERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNN---------------IKALQRKAKCLI  129 (131)
Q Consensus        77 ----------~--~~~~~~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~~---------------~ka~~rrg~a~~  129 (131)
                                .  +..+..+..+.|+|.++.++|+|++|+..+++||+++|++               ..+|+++|.++.
T Consensus       249 ~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~  328 (457)
T 1kt0_A          249 SFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYL  328 (457)
T ss_dssp             EEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hcccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHH
Confidence                      2  3456778899999999999999999999999999999999               799999999986


Q ss_pred             c
Q psy18096        130 L  130 (131)
Q Consensus       130 ~  130 (131)
                      .
T Consensus       329 ~  329 (457)
T 1kt0_A          329 K  329 (457)
T ss_dssp             H
T ss_pred             H
Confidence            4

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=99.49  E-value=2e-13  Score=88.92  Aligned_cols=63  Identities=30%  Similarity=0.316  Sum_probs=57.8

Q ss_pred             HHHHHHHHHH--Hh------------------hhhhHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHh
Q psy18096         68 GILASQELLD--SL------------------IKERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKC  127 (131)
Q Consensus        68 y~~Ai~~~~~--~~------------------~~~~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~~~ka~~rrg~a  127 (131)
                      |.+|+..|++  ++                  .|....+|+|+|.||+++|+|++|+.+|+++|+++|+++++||++|.+
T Consensus        27 ~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~  106 (162)
T 3rkv_A           27 YKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKA  106 (162)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHH
Confidence            7888888877  44                  788889999999999999999999999999999999999999999999


Q ss_pred             hhc
Q psy18096        128 LIL  130 (131)
Q Consensus       128 ~~~  130 (131)
                      +..
T Consensus       107 ~~~  109 (162)
T 3rkv_A          107 RIA  109 (162)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            864

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=99.48  E-value=2.7e-13  Score=85.69  Aligned_cols=63  Identities=29%  Similarity=0.283  Sum_probs=60.5

Q ss_pred             HHHHHHHHHH--HhhhhhHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHhhhc
Q psy18096         68 GILASQELLD--SLIKERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCLIL  130 (131)
Q Consensus        68 y~~Ai~~~~~--~~~~~~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~~~ka~~rrg~a~~~  130 (131)
                      |.+|+..|++  +++|..+.+|.|+|.||.++|+|++|+.+|+++|++||++.++|+++|.++..
T Consensus        29 ~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~   93 (126)
T 4gco_A           29 YPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLVA   93 (126)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Confidence            9999999999  88999999999999999999999999999999999999999999999999864

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=99.45  E-value=5e-13  Score=88.22  Aligned_cols=63  Identities=22%  Similarity=0.145  Sum_probs=57.2

Q ss_pred             HHHHHHHHHH--Hhhhh------------hHHHHHHHHHHHHHhCChHHHHHHHHHHHhh-------CCCCHHHH----H
Q psy18096         68 GILASQELLD--SLIKE------------RINCYNNLAQAQIKLGSLEPALMSLENVLNL-------DPNNIKAL----Q  122 (131)
Q Consensus        68 y~~Ai~~~~~--~~~~~------------~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~-------dp~~~ka~----~  122 (131)
                      |.+|+..|++  +++|.            ...+|+|+|.|+.++|+|++|+.+|++||++       +|++.++|    |
T Consensus        27 ~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~  106 (159)
T 2hr2_A           27 YDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVY  106 (159)
T ss_dssp             HHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHH
Confidence            9999999998  66665            3449999999999999999999999999999       99999999    9


Q ss_pred             HHHHhhhc
Q psy18096        123 RKAKCLIL  130 (131)
Q Consensus       123 rrg~a~~~  130 (131)
                      |||.|+..
T Consensus       107 ~rG~aL~~  114 (159)
T 2hr2_A          107 SRALALDG  114 (159)
T ss_dssp             HHHHHHHH
T ss_pred             hHHHHHHH
Confidence            99999864

>2f4e_A ATFKBP42; FKBP-like, alpha-beta, signaling protein; 2.32A {Arabidopsis thaliana}

Probab=99.38  E-value=2.6e-13  Score=91.42  Aligned_cols=67  Identities=21%  Similarity=0.409  Sum_probs=49.0

Q ss_pred             CcchhcccCCCcEEEEEEcCCCCCCCCCCC-CCCCCCCceEEEEEeeccccCCcc---CcCcchhhhHHHH
Q psy18096          1 MDYVLPLMETGEECQIEITARFGYGDKGEP-SKSIPPGAKLYYSLTLHSVLPDFD---LAELPVEKRLDFG   67 (131)
Q Consensus         1 ld~~l~~M~~gE~~~v~i~~~~ayG~~G~~-~~~ip~~~~~~~~v~l~~~~~~~~---~~~~~~~e~~~~~   67 (131)
                      +|.+|..|++||++.|+|+|.++||..|.+ .+.|||++++.|+|+|+++....+   .|.|+.++|++.+
T Consensus       109 ~eeaL~gMk~Ge~~~v~iPp~~aYG~~g~~~~~~Ip~~s~l~F~VeL~~v~~~~e~~~~~~mt~eErl~~A  179 (180)
T 2f4e_A          109 LAIGVASMKSGERALVHVGWELAYGKEGNFSFPNVPPMADLLYEVEVIGFDETKEGKARSDMTVEERIGAA  179 (180)
T ss_dssp             HHHHHTTCCBTCEEEEEECGGGTTTTTCBSSSSCBCTTCCEEEEEEEEEESCBCCC---------------
T ss_pred             HHHHHhCCCCCCEEEEEECchHhCCcCCcccCCCcCCCCeEEEEEEEEEEecCccccccccCCHHHHHhhc
Confidence            467999999999999999999999999963 257999999999999999988887   8999999998754

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=99.36  E-value=4.6e-12  Score=84.94  Aligned_cols=91  Identities=20%  Similarity=0.123  Sum_probs=69.4

Q ss_pred             EEEEEeeccccCCccCcCcchhhhHHHH---------------HHHHHHHHHH--Hhhhhh----------------HHH
Q psy18096         40 LYYSLTLHSVLPDFDLAELPVEKRLDFG---------------GILASQELLD--SLIKER----------------INC   86 (131)
Q Consensus        40 ~~~~v~l~~~~~~~~~~~~~~~e~~~~~---------------y~~Ai~~~~~--~~~~~~----------------~~~   86 (131)
                      ......+.++++.++.|.++..++...+               |.+|+..|.+  ++.|..                ..+
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~   90 (198)
T 2fbn_A           11 SSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISC   90 (198)
T ss_dssp             -----------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHH
T ss_pred             hhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHH
Confidence            3445667889999999999887765543               8999999988  443433                389


Q ss_pred             HHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHhhhc
Q psy18096         87 YNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCLIL  130 (131)
Q Consensus        87 ~~N~a~~~~kl~~~~~a~~~~~~al~~dp~~~ka~~rrg~a~~~  130 (131)
                      +.|+|.|+.++|+|++|+.+|+++++++|++.++++++|.++..
T Consensus        91 ~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~  134 (198)
T 2fbn_A           91 NLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMY  134 (198)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999998863

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=99.34  E-value=9.7e-12  Score=77.48  Aligned_cols=63  Identities=29%  Similarity=0.265  Sum_probs=60.2

Q ss_pred             HHHHHHHHHH--HhhhhhHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHhhhc
Q psy18096         68 GILASQELLD--SLIKERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCLIL  130 (131)
Q Consensus        68 y~~Ai~~~~~--~~~~~~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~~~ka~~rrg~a~~~  130 (131)
                      |.+|+..|++  ++.|....++.|+|.|+.++|+|++|+.+++++++++|++.++|+++|.++..
T Consensus        20 ~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~   84 (126)
T 3upv_A           20 WPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIA   84 (126)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence            9999999999  78899999999999999999999999999999999999999999999999864

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=99.33  E-value=6.9e-12  Score=81.93  Aligned_cols=63  Identities=11%  Similarity=-0.043  Sum_probs=60.9

Q ss_pred             HHHHHHHHHH--HhhhhhHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHhhhc
Q psy18096         68 GILASQELLD--SLIKERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCLIL  130 (131)
Q Consensus        68 y~~Ai~~~~~--~~~~~~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~~~ka~~rrg~a~~~  130 (131)
                      |.+|+..|++  .++|.++.+|.|+|.|+.++|+|++|+..++++++++|+++.+|+++|.++..
T Consensus        52 ~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~~~  116 (151)
T 3gyz_A           52 IEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLR  116 (151)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHH
Confidence            9999999999  88999999999999999999999999999999999999999999999999864

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=99.30  E-value=5.3e-12  Score=79.68  Aligned_cols=62  Identities=18%  Similarity=0.133  Sum_probs=57.2

Q ss_pred             HHHHHHHHHH--HhhhhhHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCH-------HHHHHHHHhhh
Q psy18096         68 GILASQELLD--SLIKERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNI-------KALQRKAKCLI  129 (131)
Q Consensus        68 y~~Ai~~~~~--~~~~~~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~~~-------ka~~rrg~a~~  129 (131)
                      |.+|+..|++  +++|..+.+|+|+|.||.++|+|++|+.+|+++|+++|++.       ++|+++|.++.
T Consensus        24 ~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~   94 (127)
T 4gcn_A           24 FEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRAGNAFQ   94 (127)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHHHHHHH
Confidence            9999999999  88999999999999999999999999999999999998774       67888887765

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=99.23  E-value=6.6e-11  Score=71.49  Aligned_cols=62  Identities=21%  Similarity=0.044  Sum_probs=59.2

Q ss_pred             HHHHHHHHHH--HhhhhhHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCC------HHHHHHHHHhhh
Q psy18096         68 GILASQELLD--SLIKERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNN------IKALQRKAKCLI  129 (131)
Q Consensus        68 y~~Ai~~~~~--~~~~~~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~~------~ka~~rrg~a~~  129 (131)
                      |.+|+..|++  ++.|....++.|+|.|+.++|+|++|+.+++++++++|++      .++++++|.++.
T Consensus        20 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~   89 (111)
T 2l6j_A           20 YREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQYRLELAQG   89 (111)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHH
Confidence            9999999999  7889999999999999999999999999999999999999      999999999875

>3kz7_A FK506-binding protein 3; FKPB ppiase rapamycin, isomerase, nucleus, phosphoprotein, R isomerase-inhibitor complex; HET: RAP; 1.95A {Mus musculus} SCOP: d.26.1.1 PDB: 1pbk_A*

Probab=99.22  E-value=4.6e-12  Score=79.72  Aligned_cols=50  Identities=36%  Similarity=0.694  Sum_probs=45.9

Q ss_pred             CcchhcccCCCcEEEEEEcCCCCCCCCCCCCCCCCCCceEEEEEeecccc
Q psy18096          1 MDYVLPLMETGEECQIEITARFGYGDKGEPSKSIPPGAKLYYSLTLHSVL   50 (131)
Q Consensus         1 ld~~l~~M~~gE~~~v~i~~~~ayG~~G~~~~~ip~~~~~~~~v~l~~~~   50 (131)
                      +|.+|..|++||++.|+|+|.+|||+.|.+...|||++++.|+++|++++
T Consensus        70 ~e~~l~gm~~Ge~~~v~ip~~~aYG~~g~~~~~Ip~~~~l~f~veL~~i~  119 (119)
T 3kz7_A           70 WDEALLTMSKGEKARLEIEPEWAYGKKGQPDAKIPPNTKLIFEVELVDID  119 (119)
T ss_dssp             HHHHHTTCCTTCEEEEEECGGGTTCTTCBGGGTBCTTCCEEEEEEEEEEC
T ss_pred             HHHHHhCCCCCCEEEEEECcHHhcCCCCCCCCccCcCCeEEEEEEEEEeC
Confidence            47899999999999999999999999998656899999999999999863

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=99.22  E-value=2.8e-11  Score=76.36  Aligned_cols=61  Identities=23%  Similarity=0.225  Sum_probs=58.3

Q ss_pred             HHHHHHHHHH--HhhhhhHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHhh
Q psy18096         68 GILASQELLD--SLIKERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCL  128 (131)
Q Consensus        68 y~~Ai~~~~~--~~~~~~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~~~ka~~rrg~a~  128 (131)
                      |.+|+..|++  +++|....+|.|+|.|+..+|+|++|+.+++++|++||+|..++...+.++
T Consensus        63 ~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~l  125 (126)
T 4gco_A           63 FQRALDDCDTCIRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNCL  125 (126)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHhc
Confidence            9999999999  889999999999999999999999999999999999999999999888775

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=99.20  E-value=1.7e-10  Score=75.08  Aligned_cols=63  Identities=22%  Similarity=0.035  Sum_probs=58.9

Q ss_pred             HHHHHHHHHH--HhhhhhHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHhhhc
Q psy18096         68 GILASQELLD--SLIKERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCLIL  130 (131)
Q Consensus        68 y~~Ai~~~~~--~~~~~~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~~~ka~~rrg~a~~~  130 (131)
                      |.+|+.+|++  ++.|....++.|+|.||.++|+|++|+.+++++++++|++..+|+++|.++..
T Consensus        27 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~   91 (164)
T 3sz7_A           27 YSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARFD   91 (164)
T ss_dssp             HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            9999999999  78888999999999999999999999999999999999999999999998864

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.19  E-value=1.1e-10  Score=75.47  Aligned_cols=62  Identities=13%  Similarity=0.059  Sum_probs=59.2

Q ss_pred             HHHHHHHHHH--HhhhhhHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHhhh
Q psy18096         68 GILASQELLD--SLIKERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCLI  129 (131)
Q Consensus        68 y~~Ai~~~~~--~~~~~~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~~~ka~~rrg~a~~  129 (131)
                      |.+|+..|++  +++|..+.+|.|+|.+|.++|++++|+..+.++++++|+++.+|++.|.++.
T Consensus        47 ~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  110 (150)
T 4ga2_A           47 YDLAKKYICTYINVQERDPKAHRFLGLLYELEENTDKAVECYRRSVELNPTQKDLVLKIAELLC  110 (150)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            9999999999  8899999999999999999999999999999999999999999999998875

>2d9f_A FK506-binding protein 8 variant; FKBP, rapamycin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.17  E-value=2.4e-11  Score=78.14  Aligned_cols=60  Identities=32%  Similarity=0.548  Sum_probs=52.5

Q ss_pred             CcchhcccCCCcEEEEEEcCCCCCCCCCCCCCCCCCCceEEEEEeeccccCCccCcCcch
Q psy18096          1 MDYVLPLMETGEECQIEITARFGYGDKGEPSKSIPPGAKLYYSLTLHSVLPDFDLAELPV   60 (131)
Q Consensus         1 ld~~l~~M~~gE~~~v~i~~~~ayG~~G~~~~~ip~~~~~~~~v~l~~~~~~~~~~~~~~   60 (131)
                      +|.+|..|++||++.|+++|.++||+.|...+.|||++++.|+++|.++.+..+.+.++.
T Consensus        73 ~e~~L~gm~~Ge~~~v~ip~~~aYG~~~~~~~~Ip~~~~l~f~vel~~v~~~~~~e~~s~  132 (135)
T 2d9f_A           73 LDLSVPLMDVGETAMVTADSKYCYGPQGSRSPYIPPHAALCLEVTLKTAVDRPDLEMSGP  132 (135)
T ss_dssp             TTTTGGGSCTTCEEEEEECHHHHTCTTCCSSSCCCTTCCEEEEEEEEEEESSCSSSSCCC
T ss_pred             HHHHHhCCCCCCEEEEEEChhHccCcCCcCCCccCCCCeEEEEEEEEEeecCCchhhcCc
Confidence            578999999999999999999999999933468999999999999999988776665543

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=99.14  E-value=3.3e-10  Score=72.19  Aligned_cols=63  Identities=21%  Similarity=0.108  Sum_probs=60.1

Q ss_pred             HHHHHHHHHH--HhhhhhHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHhhhc
Q psy18096         68 GILASQELLD--SLIKERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCLIL  130 (131)
Q Consensus        68 y~~Ai~~~~~--~~~~~~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~~~ka~~rrg~a~~~  130 (131)
                      |.+|+..|.+  .++|....++.++|.|+.++|+|++|+..+++++.++|+++.+++.+|.++..
T Consensus        34 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~   98 (142)
T 2xcb_A           34 WDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQ   98 (142)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHH
Confidence            9999999998  78899999999999999999999999999999999999999999999998864

>3o5e_A Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506 binding domain, HSP90 cochaperone, immunophiline, PEP prolyl isomerase; 1.60A {Homo sapiens} PDB: 3o5f_A

Probab=99.14  E-value=2.5e-11  Score=78.88  Aligned_cols=49  Identities=27%  Similarity=0.563  Sum_probs=45.8

Q ss_pred             CcchhcccCCCcEEEEEEcCCCCCCCCCCCCCCCCCCceEEEEEeecccc
Q psy18096          1 MDYVLPLMETGEECQIEITARFGYGDKGEPSKSIPPGAKLYYSLTLHSVL   50 (131)
Q Consensus         1 ld~~l~~M~~gE~~~v~i~~~~ayG~~G~~~~~ip~~~~~~~~v~l~~~~   50 (131)
                      +|.+|..|++||++.|+|+|.+|||+.|.+ +.|||++++.|+|+|.++.
T Consensus        94 ~e~~l~gm~~Ge~~~v~ipp~~aYG~~g~~-~~Ipp~~~L~f~VeL~~ik  142 (144)
T 3o5e_A           94 WDIGVATMKKGEICHLLCKPEYAYGSAGSL-PKIPSNATLFFEIELLDFK  142 (144)
T ss_dssp             HHHHHTTCCBTCEEEEEECGGGTTTTTCBT-TTBCTTCCEEEEEEEEEEE
T ss_pred             HHHHHhCCCCCCEEEEEEChHHCcCCCCCC-CCcCCCCeEEEEEEEEEec
Confidence            478999999999999999999999999975 7999999999999999885

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=99.14  E-value=2.1e-10  Score=74.09  Aligned_cols=63  Identities=16%  Similarity=0.096  Sum_probs=60.1

Q ss_pred             HHHHHHHHHH--HhhhhhHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHhhhc
Q psy18096         68 GILASQELLD--SLIKERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCLIL  130 (131)
Q Consensus        68 y~~Ai~~~~~--~~~~~~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~~~ka~~rrg~a~~~  130 (131)
                      |.+|+..|++  .++|....++.|+|.|+..+|+|++|+..+++++.++|+++.+++.+|.++..
T Consensus        37 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~  101 (148)
T 2vgx_A           37 YEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQ  101 (148)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHH
Confidence            9999999999  78899999999999999999999999999999999999999999999999864

>4dip_A Peptidyl-prolyl CIS-trans isomerase FKBP14; structural genomics, structural genomics consortium, SGC, PE prolyl CIS-trans isomerase; 1.82A {Homo sapiens}

Probab=99.14  E-value=3e-11  Score=76.63  Aligned_cols=50  Identities=30%  Similarity=0.529  Sum_probs=46.0

Q ss_pred             CcchhcccCCCcEEEEEEcCCCCCCCCCCCCCCCCCCceEEEEEeeccccCC
Q psy18096          1 MDYVLPLMETGEECQIEITARFGYGDKGEPSKSIPPGAKLYYSLTLHSVLPD   52 (131)
Q Consensus         1 ld~~l~~M~~gE~~~v~i~~~~ayG~~G~~~~~ip~~~~~~~~v~l~~~~~~   52 (131)
                      +|.+|..|++||++.|+|+|.+|||+.|.  +.|||++++.|+++|.++.+.
T Consensus        75 ~e~~l~gm~~Ge~~~~~ip~~~aYG~~g~--~~Ip~~~~l~f~vel~~i~~~  124 (125)
T 4dip_A           75 WDQGLKGMCVGEKRKLIIPPALGYGKEGK--GKIPPESTLIFNIDLLEIRNG  124 (125)
T ss_dssp             HHHHSTTCCTTCEEEEEECGGGTTTTTCB--TTBCTTCCEEEEEEEEEEECC
T ss_pred             HHHHHhCCCCCCEEEEEEChHHhcCCCCC--CCCCCCCeEEEEEEEEEEEcC
Confidence            47899999999999999999999999995  489999999999999998764

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=99.14  E-value=4.8e-10  Score=82.76  Aligned_cols=63  Identities=25%  Similarity=0.324  Sum_probs=58.0

Q ss_pred             HHHHHHHHHH--H----------------hhhhhHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHhhh
Q psy18096         68 GILASQELLD--S----------------LIKERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCLI  129 (131)
Q Consensus        68 y~~Ai~~~~~--~----------------~~~~~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~~~ka~~rrg~a~~  129 (131)
                      |.+|+..|++  +                +.+....+|+|+|.||+++++|++|+.+|++||+++|++.++|+++|.++.
T Consensus       239 ~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~  318 (370)
T 1ihg_A          239 WEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQ  318 (370)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHH
Confidence            7888888877  3                678889999999999999999999999999999999999999999999986


Q ss_pred             c
Q psy18096        130 L  130 (131)
Q Consensus       130 ~  130 (131)
                      .
T Consensus       319 ~  319 (370)
T 1ihg_A          319 G  319 (370)
T ss_dssp             H
T ss_pred             H
Confidence            4

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=99.11  E-value=8e-10  Score=69.11  Aligned_cols=63  Identities=22%  Similarity=0.120  Sum_probs=60.0

Q ss_pred             HHHHHHHHHH--HhhhhhHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHhhhc
Q psy18096         68 GILASQELLD--SLIKERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCLIL  130 (131)
Q Consensus        68 y~~Ai~~~~~--~~~~~~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~~~ka~~rrg~a~~~  130 (131)
                      |.+|+..|.+  .+.|....++.|+|.|+..+|+|++|+..+.++++++|++..+|+..|.++..
T Consensus        25 ~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~   89 (137)
T 3q49_B           25 YPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLE   89 (137)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHH
Confidence            9999999998  77889999999999999999999999999999999999999999999998864

>1jvw_A Macrophage infectivity potentiator; chagas disease, X-RAY rotamase, isomeras; 1.70A {Trypanosoma cruzi} SCOP: d.26.1.1

Probab=99.11  E-value=9.6e-11  Score=77.89  Aligned_cols=59  Identities=25%  Similarity=0.343  Sum_probs=50.3

Q ss_pred             CcchhcccCCCcEEEEEEcCCCCCCCCCCCCCCCCCCceEEEEEeeccccCCccCcCcchhh
Q psy18096          1 MDYVLPLMETGEECQIEITARFGYGDKGEPSKSIPPGAKLYYSLTLHSVLPDFDLAELPVEK   62 (131)
Q Consensus         1 ld~~l~~M~~gE~~~v~i~~~~ayG~~G~~~~~ip~~~~~~~~v~l~~~~~~~~~~~~~~~e   62 (131)
                      ++.+|..|++||++.|+|+|.+|||+.|.+ +.|||++++.|+|+|.++.+..  +.++..+
T Consensus        94 ~eeaL~gMk~Ge~~~~~Ip~~laYG~~g~~-~~Ipp~s~LiF~VeL~~i~~~~--~~~~~~e  152 (167)
T 1jvw_A           94 WTEALQLMREGDRWRLFIPYDLAYGVTGGG-GMIPPYSPLEFDVELISIKDGG--KGRTAEE  152 (167)
T ss_dssp             HHHHHTTCCTTCEEEEEECGGGTTTTTCSS-SSSCTTCCEEEEEEEEEEGGGC--CSCBHHH
T ss_pred             HHHHHcCCCCCCEEEEEECchhhCCCCCCC-CCcCCCCeEEEEEEEEEEEcCC--CCCCHHH
Confidence            367999999999999999999999999963 6899999999999999998643  4454444

>2pbc_A FK506-binding protein 2; endoplasmic reticulum, isomerase, polymorphism, rotamase, structural genomics, structural genomics consortium, SGC; 1.80A {Homo sapiens}

Probab=99.10  E-value=6.1e-11  Score=72.59  Aligned_cols=51  Identities=33%  Similarity=0.568  Sum_probs=46.4

Q ss_pred             CcchhcccCCCcEEEEEEcCCCCCCCCCCCCCCCCCCceEEEEEeeccccCC
Q psy18096          1 MDYVLPLMETGEECQIEITARFGYGDKGEPSKSIPPGAKLYYSLTLHSVLPD   52 (131)
Q Consensus         1 ld~~l~~M~~gE~~~v~i~~~~ayG~~G~~~~~ip~~~~~~~~v~l~~~~~~   52 (131)
                      +|.+|..|++||++.|+++|.++||+.|.+ +.|||++++.|+++|.++.+.
T Consensus        49 ~~~~l~gm~~Ge~~~v~ip~~~ayG~~~~~-~~Ip~~~~l~f~v~l~~v~~~   99 (102)
T 2pbc_A           49 WDQGLLGMCEGEKRKLVIPSELGYGERGAP-PKIPGGATLVFEVELLKIERR   99 (102)
T ss_dssp             HHTTSTTCCTTCEEEEEECGGGTTTTTCBT-TTBCTTCCEEEEEEEEEEGGG
T ss_pred             HHHHHhCCCCCCEEEEEECHHHCcCCCCCC-CCcCcCCeEEEEEEEEEeccc
Confidence            478999999999999999999999999964 589999999999999998754

>3o5q_A Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506 binding domain, HSP90 cochaperone, immunophiline, PEP prolyl isomerase; 0.96A {Homo sapiens} PDB: 3o5m_A 3o5l_A 3o5o_A 3o5p_A 3o5r_A* 4drk_A* 4drm_A* 4drn_A* 4dro_A* 4drp_A* 4drq_A* 3o5j_A 3o5g_A 3o5i_A 3o5k_A

Probab=99.10  E-value=5.4e-11  Score=75.80  Aligned_cols=49  Identities=27%  Similarity=0.563  Sum_probs=45.6

Q ss_pred             CcchhcccCCCcEEEEEEcCCCCCCCCCCCCCCCCCCceEEEEEeecccc
Q psy18096          1 MDYVLPLMETGEECQIEITARFGYGDKGEPSKSIPPGAKLYYSLTLHSVL   50 (131)
Q Consensus         1 ld~~l~~M~~gE~~~v~i~~~~ayG~~G~~~~~ip~~~~~~~~v~l~~~~   50 (131)
                      +|.+|..|++||++.|+|+|.+|||+.|.+ +.|||++++.|+++|.++.
T Consensus        78 ~e~~l~gm~~Ge~~~v~ip~~~aYG~~g~~-~~Ip~~~~l~f~vel~~i~  126 (128)
T 3o5q_A           78 WDIGVATMKKGEICHLLCKPEYAYGSAGSL-PKIPSNATLFFEIELLDFK  126 (128)
T ss_dssp             HHHHHTTCCTTCEEEEEECGGGTTTTTCBT-TTBCTTCCEEEEEEEEEEE
T ss_pred             HHHHHhcCCCCCEEEEEEChHHcCCCCCCC-CCcCCCCEEEEEEEEEEec
Confidence            478999999999999999999999999975 7899999999999999875

>3b7x_A FK506-binding protein 6; isomerase, repeat, rotamase, TPR repeat, williams-beuren syndrome, structural genomics consortium, SGC; 2.10A {Homo sapiens}

Probab=99.09  E-value=4.3e-11  Score=76.85  Aligned_cols=49  Identities=29%  Similarity=0.547  Sum_probs=44.9

Q ss_pred             CcchhcccCCCcEEEEEEcCCCCCCCCCCCCCCCCCCceEEEEEeecccc
Q psy18096          1 MDYVLPLMETGEECQIEITARFGYGDKGEPSKSIPPGAKLYYSLTLHSVL   50 (131)
Q Consensus         1 ld~~l~~M~~gE~~~v~i~~~~ayG~~G~~~~~ip~~~~~~~~v~l~~~~   50 (131)
                      +|.+|..|++||++.|+|+|.+|||+.|.+ +.|||++++.|+|+|+++.
T Consensus        85 ~e~aL~gm~~Ge~~~v~ip~~~aYG~~~~~-~~Ip~~~~l~f~VeL~~i~  133 (134)
T 3b7x_A           85 MELGLLSMRRGELARFLFKPNYAYGTLGCP-PLIPPNTTVLFEIELLDFL  133 (134)
T ss_dssp             HHHHHHTCEETCEEEEEECGGGTTTTTCBT-TTBCTTCCEEEEEEEEEEC
T ss_pred             HHHHHhCCCCCCEEEEEECHHHCcCCCCCC-CCcCcCCeEEEEEEEEEEe
Confidence            468999999999999999999999999974 5699999999999999874

>2ppn_A FK506-binding protein 1A; high resolution protein structure, isomerase; 0.92A {Homo sapiens} SCOP: d.26.1.1 PDB: 1b6c_A 1a7x_A 1d7h_A 1d7i_A 1d7j_A* 1f40_A* 1fap_A* 1d6o_A* 1fkd_A* 1fkf_A* 1fkg_A* 1fkh_A* 1fki_A* 1fkj_A* 1fkr_A 1fks_A 1fkt_A 1j4h_A* 1j4i_A* 1j4r_A* ...

Probab=99.08  E-value=7.8e-11  Score=72.68  Aligned_cols=48  Identities=27%  Similarity=0.595  Sum_probs=44.2

Q ss_pred             CcchhcccCCCcEEEEEEcCCCCCCCCCCCCCCCCCCceEEEEEeeccc
Q psy18096          1 MDYVLPLMETGEECQIEITARFGYGDKGEPSKSIPPGAKLYYSLTLHSV   49 (131)
Q Consensus         1 ld~~l~~M~~gE~~~v~i~~~~ayG~~G~~~~~ip~~~~~~~~v~l~~~   49 (131)
                      +|.+|..|++||++.|+++|.++||+.|.+ +.|||++++.|+++|.++
T Consensus        59 ~~~~l~gm~~Ge~~~~~ip~~~ayG~~~~~-~~Ip~~~~l~f~v~l~~v  106 (107)
T 2ppn_A           59 WEEGVAQMSVGQRAKLTISPDYAYGATGHP-GIIPPHATLVFDVELLKL  106 (107)
T ss_dssp             HHHHHTTCCTTCEEEEEECGGGTTTTTCBT-TTBCTTCCEEEEEEEEEE
T ss_pred             HHHHHhCCCCCCEEEEEECHHHccCCCCCC-CCcCCCCeEEEEEEEEEe
Confidence            468999999999999999999999999974 579999999999999876

>2vn1_A 70 kDa peptidylprolyl isomerase; FKBP, FK506, TPR repeat; HET: FK5; 2.35A {Plasmodium falciparum} PDB: 2ofn_A 2ki3_A 3ihz_A* 3ni6_A 3pa7_A

Probab=99.08  E-value=8.2e-11  Score=75.01  Aligned_cols=50  Identities=32%  Similarity=0.605  Sum_probs=45.8

Q ss_pred             CcchhcccCCCcEEEEEEcCCCCCCCCCCCCCCCCCCceEEEEEeeccccC
Q psy18096          1 MDYVLPLMETGEECQIEITARFGYGDKGEPSKSIPPGAKLYYSLTLHSVLP   51 (131)
Q Consensus         1 ld~~l~~M~~gE~~~v~i~~~~ayG~~G~~~~~ip~~~~~~~~v~l~~~~~   51 (131)
                      +|.+|..|++||++.|+|+|.++||+.|.+ +.|||++++.|+|+|.++.+
T Consensus        78 ~e~~l~gm~~Ge~~~v~ip~~~aYG~~~~~-~~Ip~~~~l~f~vel~~v~~  127 (129)
T 2vn1_A           78 WDICVSSMRKNEKCLVRIESMYGYGDEGCG-ESIPGNSVLLFEIELLSFRE  127 (129)
T ss_dssp             HHHHHTTCCTTCEEEEEECGGGTTTTTCBT-TTBCTTCCEEEEEEEEEEEC
T ss_pred             HHHHHhCCCCCCEEEEEEChHHcCCCCCCC-CCcCCCCeEEEEEEEEEEec
Confidence            468999999999999999999999999974 57999999999999999865

>2jwx_A FKBP38NTD, FK506-binding protein 8 variant; apoptosis, beta barrel, central helix, with flexible N-terminal extension, isomerase; NMR {Homo sapiens}

Probab=99.08  E-value=8.8e-11  Score=77.34  Aligned_cols=53  Identities=32%  Similarity=0.589  Sum_probs=46.7

Q ss_pred             CcchhcccCCCcEEEEEEcCCCCCCCCCCCCCCCCCCceEEEEEeeccccCCc
Q psy18096          1 MDYVLPLMETGEECQIEITARFGYGDKGEPSKSIPPGAKLYYSLTLHSVLPDF   53 (131)
Q Consensus         1 ld~~l~~M~~gE~~~v~i~~~~ayG~~G~~~~~ip~~~~~~~~v~l~~~~~~~   53 (131)
                      +|.+|..|++||+++|+|+|.++||+.|...+.|||++++.|+|+|.++.+..
T Consensus        99 ~eeaL~gMk~Ge~~~v~IP~~~aYG~~g~~~~~IPp~stLiF~VeL~~i~~~~  151 (157)
T 2jwx_A           99 LDLSVPLMDVGETAMVTADSKYCYGPQGSRSPYIPPHAALCLEVTLKTAVDLE  151 (157)
T ss_dssp             HHHHTTTSCTTCEEEEEECGGGTTTTTCCSSSCCCTTCCEEEEEEEEEEEECS
T ss_pred             HHHHHcCCCCCCEEEEEECchhcCCcccccCCCcCCCCeEEEEEEEEEEEccc
Confidence            46899999999999999999999999993246899999999999999986543

>2awg_A 38 kDa FK-506 binding protein; FKBP-type, ppiase, BCL-2 inhibitor, SHH signalling antagonist, structural genomics consortium, SGC; 1.60A {Homo sapiens} PDB: 2f2d_A 3ey6_A

Probab=99.08  E-value=8.5e-11  Score=73.84  Aligned_cols=49  Identities=33%  Similarity=0.691  Sum_probs=44.9

Q ss_pred             CcchhcccCCCcEEEEEEcCCCCCCCCCCCCCCCCCCceEEEEEeecccc
Q psy18096          1 MDYVLPLMETGEECQIEITARFGYGDKGEPSKSIPPGAKLYYSLTLHSVL   50 (131)
Q Consensus         1 ld~~l~~M~~gE~~~v~i~~~~ayG~~G~~~~~ip~~~~~~~~v~l~~~~   50 (131)
                      +|.+|..|++||++.|+++|.++||..|.+ +.|||++++.|+++|.++.
T Consensus        69 ~e~~l~gm~~Ge~~~~~ip~~~ayG~~~~~-~~Ip~~~~l~f~v~l~~v~  117 (118)
T 2awg_A           69 LDLSVPLMDVGETAMVTADSKYCYGPQGRS-PYIPPHAALCLEVTLKTAV  117 (118)
T ss_dssp             HHHHGGGSCTTCEEEEEECGGGTTTTTCBT-TTBCTTCCEEEEEEEEEEE
T ss_pred             HHHHHhCCCCCCEEEEEEChHHccCCCCCC-CccCCCCeEEEEEEEEEec
Confidence            468999999999999999999999999974 6899999999999998874

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=99.07  E-value=8.5e-10  Score=68.89  Aligned_cols=62  Identities=19%  Similarity=0.125  Sum_probs=59.6

Q ss_pred             HHHHHHHHHH--HhhhhhHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHhhh
Q psy18096         68 GILASQELLD--SLIKERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCLI  129 (131)
Q Consensus        68 y~~Ai~~~~~--~~~~~~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~~~ka~~rrg~a~~  129 (131)
                      |.+|+..|.+  +++|....++.++|.++..+|++++|+..++++++++|++..+++..|.++.
T Consensus        33 ~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~   96 (121)
T 1hxi_A           33 LAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHT   96 (121)
T ss_dssp             HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            9999999999  7889999999999999999999999999999999999999999999999875

>1q1c_A FK506-binding protein 4; rotamase, TPR repeat, nuclear protein, phosphorylation, isomerase; 1.90A {Homo sapiens} SCOP: d.26.1.1 d.26.1.1 PDB: 1n1a_A 1rot_A 1rou_A

Probab=99.07  E-value=5.9e-11  Score=84.90  Aligned_cols=57  Identities=28%  Similarity=0.481  Sum_probs=50.1

Q ss_pred             CcchhcccCCCcEEEEEEcCCCCCCCCCCCCCCCCCCceEEEEEeeccccCCccCcC
Q psy18096          1 MDYVLPLMETGEECQIEITARFGYGDKGEPSKSIPPGAKLYYSLTLHSVLPDFDLAE   57 (131)
Q Consensus         1 ld~~l~~M~~gE~~~v~i~~~~ayG~~G~~~~~ip~~~~~~~~v~l~~~~~~~~~~~   57 (131)
                      +|.+|..|++||++.|+++|.|+||..|.+...||+++++.|+|+|+++.+.++.|+
T Consensus       224 ~e~~l~gmk~Ge~~~v~ip~~~~yG~~~~~~~~IP~~~~l~f~V~L~~i~~~~~~W~  280 (280)
T 1q1c_A          224 LERAIQRMEKGEHSIVYLKPSYAFGSVGKEKFQIPPNAELKYELHLKSFEKAKESWE  280 (280)
T ss_dssp             HHHHHTTCCTTCEEEEEECGGGTTTTTCBGGGTBCTTCCEEEEEEEEEEECCCC---
T ss_pred             HHHHHhCCCCCcEEEEEEChhHcCCcCCCccCccCCCCeEEEEEEEEEEeCCCCCCC
Confidence            478999999999999999999999999976557999999999999999999888874

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=99.06  E-value=3.8e-10  Score=74.31  Aligned_cols=62  Identities=13%  Similarity=0.104  Sum_probs=58.9

Q ss_pred             HHHHHHHHHH--HhhhhhHHHHHHHHHHHHHhCCh----------HHHHHHHHHHHhhCCCCHHHHHHHHHhhh
Q psy18096         68 GILASQELLD--SLIKERINCYNNLAQAQIKLGSL----------EPALMSLENVLNLDPNNIKALQRKAKCLI  129 (131)
Q Consensus        68 y~~Ai~~~~~--~~~~~~~~~~~N~a~~~~kl~~~----------~~a~~~~~~al~~dp~~~ka~~rrg~a~~  129 (131)
                      |++|+..+..  +++|..+.+|.|++.+++.++++          ++|+..+++||++||++..|||..|.||.
T Consensus        18 feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~   91 (158)
T 1zu2_A           18 FEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYT   91 (158)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHH
Confidence            9999999999  88999999999999999999876          59999999999999999999999999986

>1yat_A FK506 binding protein; HET: FK5; 2.50A {Saccharomyces cerevisiae} SCOP: d.26.1.1

Probab=99.06  E-value=1.2e-10  Score=72.57  Aligned_cols=48  Identities=31%  Similarity=0.668  Sum_probs=44.1

Q ss_pred             CcchhcccCCCcEEEEEEcCCCCCCCCCCCCCCCCCCceEEEEEeeccc
Q psy18096          1 MDYVLPLMETGEECQIEITARFGYGDKGEPSKSIPPGAKLYYSLTLHSV   49 (131)
Q Consensus         1 ld~~l~~M~~gE~~~v~i~~~~ayG~~G~~~~~ip~~~~~~~~v~l~~~   49 (131)
                      +|.+|..|++||++.|+++|.++||+.|.+ +.|||++++.|+++|.++
T Consensus        65 ~e~~l~gm~~Ge~~~v~ip~~~ayG~~~~~-~~Ip~~~~l~f~vel~~i  112 (113)
T 1yat_A           65 WDVGIPKLSVGEKARLTIPGPYAYGPRGFP-GLIPPNSTLVFDVELLKV  112 (113)
T ss_dssp             HHHHGGGCCTTCEEEEEECGGGTTTTTCBT-TTBCTTCCEEEEEEEEEE
T ss_pred             HHHHHhCCCCCCEEEEEECHHHCcCCCCCC-CCcCCCCeEEEEEEEEEe
Confidence            468999999999999999999999999964 579999999999999876

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=99.05  E-value=3.9e-10  Score=69.61  Aligned_cols=62  Identities=23%  Similarity=0.122  Sum_probs=35.4

Q ss_pred             HHHHHHHHHH--Hh---hhhhHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHhhh
Q psy18096         68 GILASQELLD--SL---IKERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCLI  129 (131)
Q Consensus        68 y~~Ai~~~~~--~~---~~~~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~~~ka~~rrg~a~~  129 (131)
                      |.+|+..|++  ++   +|....++.|+|.+|.++|+|++|+..++++++++|++..+++..|.++.
T Consensus         6 ~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~   72 (117)
T 3k9i_A            6 EAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLY   72 (117)
T ss_dssp             -CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence            3445555555  33   45555666666666666666666666666666666666666666665553

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.05  E-value=7.2e-10  Score=71.58  Aligned_cols=63  Identities=10%  Similarity=-0.104  Sum_probs=59.1

Q ss_pred             HHHHHHHHHH--HhhhhhHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHhhhc
Q psy18096         68 GILASQELLD--SLIKERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCLIL  130 (131)
Q Consensus        68 y~~Ai~~~~~--~~~~~~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~~~ka~~rrg~a~~~  130 (131)
                      +.+||..+..  ...|.....+.++|.+|.++|+|++|+..++++|+++|+++.+|+.+|.++..
T Consensus        13 ~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~   77 (150)
T 4ga2_A           13 VERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYEL   77 (150)
T ss_dssp             HHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            7899999988  77888999999999999999999999999999999999999999999999864

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.04  E-value=1e-09  Score=74.31  Aligned_cols=62  Identities=19%  Similarity=0.171  Sum_probs=59.6

Q ss_pred             HHHHHHHHHH--HhhhhhHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHhhh
Q psy18096         68 GILASQELLD--SLIKERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCLI  129 (131)
Q Consensus        68 y~~Ai~~~~~--~~~~~~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~~~ka~~rrg~a~~  129 (131)
                      |.+|+..|++  +++|..+.++.|+|.++..+|++++|+..++++++++|++..+|+.+|.++.
T Consensus        70 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~  133 (208)
T 3urz_A           70 YDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYY  133 (208)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence            9999999999  8899999999999999999999999999999999999999999999998874

>2lgo_A FKBP; infectious disease, isomerase, giardiasis, ssgcid, structura genomics, seattle structural genomics center for infectious; NMR {Giardia lamblia}

Probab=99.04  E-value=1.7e-10  Score=73.71  Aligned_cols=48  Identities=33%  Similarity=0.600  Sum_probs=43.8

Q ss_pred             CcchhcccCCCcEEEEEEcCCCCCCCCCCCCCCCCCCceEEEEEeeccc
Q psy18096          1 MDYVLPLMETGEECQIEITARFGYGDKGEPSKSIPPGAKLYYSLTLHSV   49 (131)
Q Consensus         1 ld~~l~~M~~gE~~~v~i~~~~ayG~~G~~~~~ip~~~~~~~~v~l~~~   49 (131)
                      +|.+|..|++||++.|+|+|.++||+.|.+ +.|||++++.|+++|.++
T Consensus        83 ~e~aL~gm~~Ge~~~v~ip~~~aYG~~~~~-~~Ip~~~~l~f~VeL~~i  130 (130)
T 2lgo_A           83 WDQGVATMTLGEKALFTIPYQLAYGERGYP-PVIPPKATLVFEVELLAV  130 (130)
T ss_dssp             HHHHHHHSCTTEEEEEEECTTTSTTTTCCS-TTSCSSCCEEEEEEEEEC
T ss_pred             HHHHHhCCCCCCEEEEEECcHHHCCCCCCC-CCcCCCCeEEEEEEEEEC
Confidence            468999999999999999999999999974 579999999999999864

>2y78_A Peptidyl-prolyl CIS-trans isomerase; MIP, ppiase, virulence; HET: SO4 GOL; 0.91A {Burkholderia pseudomallei} PDB: 2ke0_A 2ko7_A* 2l2s_A* 4dz2_A* 4dz3_A*

Probab=99.04  E-value=1.4e-10  Score=74.45  Aligned_cols=48  Identities=31%  Similarity=0.546  Sum_probs=43.9

Q ss_pred             CcchhcccCCCcEEEEEEcCCCCCCCCCCCCCCCCCCceEEEEEeeccc
Q psy18096          1 MDYVLPLMETGEECQIEITARFGYGDKGEPSKSIPPGAKLYYSLTLHSV   49 (131)
Q Consensus         1 ld~~l~~M~~gE~~~v~i~~~~ayG~~G~~~~~ip~~~~~~~~v~l~~~   49 (131)
                      +|.+|..|++||+++|+|+|.++||+.|.+ +.|||++++.|+++|.++
T Consensus        86 ~eeaL~gmk~Ge~~~v~ip~~~aYG~~~~~-~~Ipp~~~l~f~VeL~~I  133 (133)
T 2y78_A           86 WDEGVQGMKVGGVRRLTIPPQLGYGARGAG-GVIPPNATLVFEVELLDV  133 (133)
T ss_dssp             HHHHSTTCBTTCEEEEEECGGGTTTTTCBT-TTBCTTCCEEEEEEEEEC
T ss_pred             HHHHHcCCCCCCEEEEEECcHHhCCCCCCC-CCCCCCCeEEEEEEEEEC
Confidence            478999999999999999999999999964 679999999999999864

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=99.03  E-value=2e-09  Score=62.65  Aligned_cols=63  Identities=25%  Similarity=0.225  Sum_probs=59.1

Q ss_pred             HHHHHHHHHH--HhhhhhHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHhhhc
Q psy18096         68 GILASQELLD--SLIKERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCLIL  130 (131)
Q Consensus        68 y~~Ai~~~~~--~~~~~~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~~~ka~~rrg~a~~~  130 (131)
                      |.+|+..|.+  ++.|....++.++|.++.++|++++|+..+.++++++|++..+++..|.++..
T Consensus        25 ~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~   89 (91)
T 1na3_A           25 YDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQK   89 (91)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh
Confidence            8999999998  77788899999999999999999999999999999999999999999998753

>3oe2_A Peptidyl-prolyl CIS-trans isomerase; FKBP, ppiase, FK506; HET: TAR SRT; 1.60A {Pseudomonas syringae PV} SCOP: d.26.1.0

Probab=99.03  E-value=1.5e-10  Score=79.88  Aligned_cols=49  Identities=27%  Similarity=0.381  Sum_probs=44.9

Q ss_pred             CcchhcccCCCcEEEEEEcCCCCCCCCCCCCCCCCCCceEEEEEeecccc
Q psy18096          1 MDYVLPLMETGEECQIEITARFGYGDKGEPSKSIPPGAKLYYSLTLHSVL   50 (131)
Q Consensus         1 ld~~l~~M~~gE~~~v~i~~~~ayG~~G~~~~~ip~~~~~~~~v~l~~~~   50 (131)
                      ++.+|..|++||+++|+|+|.+|||+.|.+ +.|||++++.|+|+|.++.
T Consensus       170 ~eeaL~gMk~Gek~~v~IPp~lAYG~~g~~-~~IPpnstLvFeVeLl~Ik  218 (219)
T 3oe2_A          170 WTSALQNMPTGAKWRLVIPSDQAYGAEGAG-DLIDPFTPLVFEIELIAVS  218 (219)
T ss_dssp             HHHHHTTCCTTCEEEEEECGGGTTTTTCBT-TTBCTTCCEEEEEEEEEEE
T ss_pred             HHHHHhCCCCCCEEEEEECchhcCCCCCCC-CCCCCCCeEEEEEEEEEEe
Confidence            367999999999999999999999999964 5799999999999999875

>1r9h_A FKB-6, FK506 binding protein family; structural genomics, peptidylprolyl isomerase, PSI, protein structure initiative; 1.80A {Caenorhabditis elegans} SCOP: d.26.1.1

Probab=99.02  E-value=1.8e-10  Score=74.03  Aligned_cols=51  Identities=33%  Similarity=0.638  Sum_probs=46.4

Q ss_pred             CcchhcccCCCcEEEEEEcCCCCCCCCCCCCCCCCCCceEEEEEeeccccCC
Q psy18096          1 MDYVLPLMETGEECQIEITARFGYGDKGEPSKSIPPGAKLYYSLTLHSVLPD   52 (131)
Q Consensus         1 ld~~l~~M~~gE~~~v~i~~~~ayG~~G~~~~~ip~~~~~~~~v~l~~~~~~   52 (131)
                      +|.+|..|++||++.|+|+|.+|||+.|.+ +.||+++++.|+++|.++...
T Consensus        73 ~e~~l~gm~~Ge~~~v~ip~~~aYG~~g~~-~~Ip~~~~l~f~v~l~~i~~~  123 (135)
T 1r9h_A           73 WDLGVATMTKGEVAEFTIRSDYGYGDAGSP-PKIPGGATLIFEVELFEWSAE  123 (135)
T ss_dssp             HHHHHTTCCBTCEEEEEECGGGTTTTTCBT-TTBCTTCCEEEEEEEEEEEC-
T ss_pred             HHHHHhcCCCCCEEEEEEChHHcCCCCCCC-CCcCcCCcEEEEEEEEEeecC
Confidence            478999999999999999999999999974 789999999999999999753

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=99.02  E-value=1.7e-09  Score=76.66  Aligned_cols=63  Identities=22%  Similarity=0.120  Sum_probs=60.1

Q ss_pred             HHHHHHHHHH--HhhhhhHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHhhhc
Q psy18096         68 GILASQELLD--SLIKERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCLIL  130 (131)
Q Consensus        68 y~~Ai~~~~~--~~~~~~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~~~ka~~rrg~a~~~  130 (131)
                      |.+|+..|++  .+.|....++.|+|.||.++|+|++|+.+++++++++|++.++++++|.++..
T Consensus        20 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~   84 (281)
T 2c2l_A           20 YPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLE   84 (281)
T ss_dssp             HHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            9999999999  77899999999999999999999999999999999999999999999999864

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.01  E-value=3.1e-09  Score=71.87  Aligned_cols=63  Identities=24%  Similarity=0.225  Sum_probs=59.6

Q ss_pred             HHHHHHHHHH--HhhhhhHHHHHH----------------HHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHhhh
Q psy18096         68 GILASQELLD--SLIKERINCYNN----------------LAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCLI  129 (131)
Q Consensus        68 y~~Ai~~~~~--~~~~~~~~~~~N----------------~a~~~~kl~~~~~a~~~~~~al~~dp~~~ka~~rrg~a~~  129 (131)
                      |.+|+..|++  +++|.+..++.+                +|.+|.++|++++|+..++++|+++|+++.+|+.+|.++.
T Consensus        20 ~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~   99 (208)
T 3urz_A           20 NGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQV   99 (208)
T ss_dssp             HHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence            9999999999  788999999999                9999999999999999999999999999999999999886


Q ss_pred             c
Q psy18096        130 L  130 (131)
Q Consensus       130 ~  130 (131)
                      .
T Consensus       100 ~  100 (208)
T 3urz_A          100 C  100 (208)
T ss_dssp             H
T ss_pred             H
Confidence            3

>3jxv_A 70 kDa peptidyl-prolyl isomerase; FKBP- binding domain five-stranded anti-parallel beta-sheet alpha-helix crossing THis sheet; 2.08A {Triticum aestivum} PDB: 3jym_A

Probab=98.96  E-value=3.6e-10  Score=83.27  Aligned_cols=51  Identities=27%  Similarity=0.602  Sum_probs=46.6

Q ss_pred             CcchhcccCCCcEEEEEEcCCCCCCCCCCCCC----CCCCCceEEEEEeeccccC
Q psy18096          1 MDYVLPLMETGEECQIEITARFGYGDKGEPSK----SIPPGAKLYYSLTLHSVLP   51 (131)
Q Consensus         1 ld~~l~~M~~gE~~~v~i~~~~ayG~~G~~~~----~ip~~~~~~~~v~l~~~~~   51 (131)
                      ||.+|.+|++||++.|+|+|+|+||+.|.+..    .|||++.+.|+++|.++..
T Consensus       182 l~~~l~~m~~GE~~~~~v~p~~~yg~~G~~~~~~~~~ip~~~~l~~~vel~~~~~  236 (356)
T 3jxv_A          182 LAKAVKTMKKGEKVLLAVKPQYGFGEMGRPAAGEGGAVPPNASLVIDLELVSWKT  236 (356)
T ss_dssp             HHHHHTTCCBTCEEEEEECGGGTTTTTCBCCCC--CCBCTTCCEEEEEEEEEEEC
T ss_pred             HHHHHhhCCCCCEEEEEEChHhhcCCCCCCcccccccCCCCcEEEEEEEEEEEec
Confidence            47899999999999999999999999998653    5999999999999999865

>1fd9_A Protein (macrophage infectivity potentiator prote; FKBP domain, long alpha helix, dimerisation VIA helical INTE isomerase; 2.41A {Legionella pneumophila} SCOP: d.26.1.1 PDB: 2uz5_A 2vcd_A*

Probab=98.96  E-value=5.6e-10  Score=76.87  Aligned_cols=50  Identities=26%  Similarity=0.414  Sum_probs=45.7

Q ss_pred             CcchhcccCCCcEEEEEEcCCCCCCCCCCCCCCCCCCceEEEEEeeccccC
Q psy18096          1 MDYVLPLMETGEECQIEITARFGYGDKGEPSKSIPPGAKLYYSLTLHSVLP   51 (131)
Q Consensus         1 ld~~l~~M~~gE~~~v~i~~~~ayG~~G~~~~~ip~~~~~~~~v~l~~~~~   51 (131)
                      ++.+|..|++||+++|+|+|.++||+.|.+ +.|||++++.|+|+|.++.+
T Consensus       162 ~eeaL~gMk~Gek~~v~IP~~laYG~~g~~-~~Ipp~stLiF~VeLl~v~~  211 (213)
T 1fd9_A          162 WTEALQLMPAGSTWEIYVPSGLAYGPRSVG-GPIGPNETLIFKIHLISVKK  211 (213)
T ss_dssp             HHHHHTTCCTTCEEEEEECGGGTTTTCCCS-SSCCTTCCEEEEEEEEEEEC
T ss_pred             HHHHHcCCCCCCEEEEEECchhccCccCCC-CCCCCCCeEEEEEEEEEEEc
Confidence            367899999999999999999999999963 68999999999999999865

>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase; ssgcid, seattle structural genomics center for in disease; HET: FK5; 1.50A {Burkholderia pseudomallei} PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A* 4giv_A* 1euv_B 3v60_A 3v61_A 3v62_A*

Probab=98.94  E-value=4.8e-10  Score=77.05  Aligned_cols=48  Identities=31%  Similarity=0.559  Sum_probs=43.9

Q ss_pred             CcchhcccCCCcEEEEEEcCCCCCCCCCCCCCCCCCCceEEEEEeeccc
Q psy18096          1 MDYVLPLMETGEECQIEITARFGYGDKGEPSKSIPPGAKLYYSLTLHSV   49 (131)
Q Consensus         1 ld~~l~~M~~gE~~~v~i~~~~ayG~~G~~~~~ip~~~~~~~~v~l~~~   49 (131)
                      +|.+|..|++||++.|+|+|.+|||+.|.+ +.|||++++.|+++|.++
T Consensus       162 ~eeaL~gM~~Ge~~~v~Ipp~~aYG~~g~~-~~IP~~s~LvF~VeL~~I  209 (209)
T 3uf8_A          162 WDEGVQGMKVGGVRRLTIPPQLGYGARGAA-GVIPPNATLVFEVELLDV  209 (209)
T ss_dssp             HHHHHTTCBTTCEEEEEECGGGTTTTTCBT-TTBCTTCCEEEEEEEEEC
T ss_pred             HHHHHhCCCCCCEEEEEECcHHhCCCCCCC-CCcCCCCeEEEEEEEEEC
Confidence            478999999999999999999999999964 669999999999999864

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=98.93  E-value=6.6e-09  Score=61.70  Aligned_cols=56  Identities=23%  Similarity=0.225  Sum_probs=52.4

Q ss_pred             HHHHHHHHHH--HhhhhhHH-HHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHH
Q psy18096         68 GILASQELLD--SLIKERIN-CYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQR  123 (131)
Q Consensus        68 y~~Ai~~~~~--~~~~~~~~-~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~~~ka~~r  123 (131)
                      |.+|+..|++  +..|.... ++.++|.+|.++|+|++|+..++++++++|++..++++
T Consensus        16 ~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~   74 (99)
T 2kc7_A           16 IENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR   74 (99)
T ss_dssp             HHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH
Confidence            9999999998  77888888 99999999999999999999999999999999999844

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.92  E-value=1.4e-08  Score=63.68  Aligned_cols=62  Identities=21%  Similarity=0.142  Sum_probs=55.7

Q ss_pred             HHHHHHHHHH--Hhhhhh---HHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHhhh
Q psy18096         68 GILASQELLD--SLIKER---INCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCLI  129 (131)
Q Consensus        68 y~~Ai~~~~~--~~~~~~---~~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~~~ka~~rrg~a~~  129 (131)
                      |.+|+.+|++  ++.|..   ..++.|+|.++.++++|++|+..++++++++|++..+++.+|.++.
T Consensus        44 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~  110 (148)
T 2dba_A           44 YGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQALE  110 (148)
T ss_dssp             HHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHHHHHH
Confidence            9999999998  555554   8899999999999999999999999999999999999999998875

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=98.91  E-value=9.3e-09  Score=61.39  Aligned_cols=63  Identities=19%  Similarity=0.094  Sum_probs=58.9

Q ss_pred             HHHHHHHHHH--HhhhhhHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCC--CHHHHHHHHHhhhc
Q psy18096         68 GILASQELLD--SLIKERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPN--NIKALQRKAKCLIL  130 (131)
Q Consensus        68 y~~Ai~~~~~--~~~~~~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~--~~ka~~rrg~a~~~  130 (131)
                      |.+|+..+++  ++.|....++.++|.++..+|+|++|+..++++++++|+  +..+++..|.++..
T Consensus        22 ~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~~~~   88 (112)
T 2kck_A           22 YTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADALRY   88 (112)
T ss_dssp             HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHH
Confidence            8899999998  677888899999999999999999999999999999999  99999999998864

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=98.91  E-value=3.2e-09  Score=78.75  Aligned_cols=62  Identities=11%  Similarity=0.080  Sum_probs=45.3

Q ss_pred             HHHHHHHHHH--HhhhhhHHHHHHHHHHHHHhCC-hHHHHHHHHHHHhhCCCCHHHHHHHHHhhh
Q psy18096         68 GILASQELLD--SLIKERINCYNNLAQAQIKLGS-LEPALMSLENVLNLDPNNIKALQRKAKCLI  129 (131)
Q Consensus        68 y~~Ai~~~~~--~~~~~~~~~~~N~a~~~~kl~~-~~~a~~~~~~al~~dp~~~ka~~rrg~a~~  129 (131)
                      |.+|+..|++  +++|.+..+|+|++.++.++|+ +++|+.+++++|+++|++..+|+.+|.++.
T Consensus       113 ~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~  177 (382)
T 2h6f_A          113 SERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVE  177 (382)
T ss_dssp             CHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence            7777777777  6667777777777777777775 777777777777777777777777777664

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=98.90  E-value=1.1e-08  Score=61.51  Aligned_cols=62  Identities=26%  Similarity=0.127  Sum_probs=34.9

Q ss_pred             HHHHHHHHHH--HhhhhhHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHhhh
Q psy18096         68 GILASQELLD--SLIKERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCLI  129 (131)
Q Consensus        68 y~~Ai~~~~~--~~~~~~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~~~ka~~rrg~a~~  129 (131)
                      |.+|+..|++  ...|....++.++|.++.++|+|++|+..++++++++|++..+++..|.++.
T Consensus        20 ~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~   83 (118)
T 1elw_A           20 IDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALE   83 (118)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence            5555555555  4445555555555555555555555555555555555555555555555543

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=98.89  E-value=3.8e-09  Score=68.55  Aligned_cols=62  Identities=10%  Similarity=0.036  Sum_probs=58.7

Q ss_pred             HHHHHHHHHH--HhhhhhHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHhhh
Q psy18096         68 GILASQELLD--SLIKERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCLI  129 (131)
Q Consensus        68 y~~Ai~~~~~--~~~~~~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~~~ka~~rrg~a~~  129 (131)
                      |.+|+..|++  +++|....+|.|+|.+|.++|+|++|+.++.++++++|++..+|++++.+.+
T Consensus        61 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~  124 (164)
T 3sz7_A           61 HEKAAEDAELATVVDPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLETT  124 (164)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence            9999999999  8889999999999999999999999999999999999999999999987754

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=98.87  E-value=1.2e-08  Score=66.90  Aligned_cols=63  Identities=19%  Similarity=0.195  Sum_probs=49.2

Q ss_pred             HHHHHHHHHH--HhhhhhHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHhhhc
Q psy18096         68 GILASQELLD--SLIKERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCLIL  130 (131)
Q Consensus        68 y~~Ai~~~~~--~~~~~~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~~~ka~~rrg~a~~~  130 (131)
                      |..|+..+.+  .+.|....++.++|.+|.++|+|++|+..++++++++|++..+|+.+|.++..
T Consensus        89 ~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~  153 (184)
T 3vtx_A           89 KQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEG  153 (184)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHH
Confidence            6666666666  66677778888888888888888888888888888888888888888887753

>1q6h_A FKBP-type peptidyl-prolyl CIS-trans isomerase FKP; chaperone, peptidyl-prolyl isomerase, heat shock protein, FK family; HET: MSE; 1.97A {Escherichia coli} SCOP: d.26.1.1 PDB: 1q6i_A* 1q6u_A

Probab=98.86  E-value=1.5e-09  Score=75.20  Aligned_cols=47  Identities=28%  Similarity=0.547  Sum_probs=43.2

Q ss_pred             CcchhcccCCCcEEEEEEcCCCCCCCCCCCCCCCCCCceEEEEEeeccc
Q psy18096          1 MDYVLPLMETGEECQIEITARFGYGDKGEPSKSIPPGAKLYYSLTLHSV   49 (131)
Q Consensus         1 ld~~l~~M~~gE~~~v~i~~~~ayG~~G~~~~~ip~~~~~~~~v~l~~~   49 (131)
                      ++.+|..|++||++.|+|+|.++||+.|.+  .|||++++.|+|+|.++
T Consensus       177 ~eeaL~gMk~Gek~~v~IP~~laYG~~g~~--~IPp~stLiF~VeL~~i  223 (224)
T 1q6h_A          177 WTEGLKNIKKGGKIKLVIPPELAYGKAGVP--GIPPNSTLVFDVELLDV  223 (224)
T ss_dssp             HHHHGGGSCTTCEEEEEECGGGTTTTTCBT--TBCTTCCEEEEEEEEEE
T ss_pred             HHHHHcCCCCCCEEEEEECchhhcCcCCCC--CCCCCCEEEEEEEEEEe
Confidence            367999999999999999999999999964  39999999999999876

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=98.86  E-value=7e-09  Score=76.94  Aligned_cols=62  Identities=13%  Similarity=0.041  Sum_probs=59.5

Q ss_pred             HHHHHHHHHH--HhhhhhHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHhhh
Q psy18096         68 GILASQELLD--SLIKERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCLI  129 (131)
Q Consensus        68 y~~Ai~~~~~--~~~~~~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~~~ka~~rrg~a~~  129 (131)
                      |.+|+..|++  +++|.+..+|+|++.++.++|+|++|+.+|+++|++||+|..+|+.+|.++.
T Consensus       148 ~~eAl~~~~~al~l~P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~  211 (382)
T 2h6f_A          148 LHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQ  211 (382)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHH
Confidence            8899999988  8899999999999999999999999999999999999999999999999885

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=98.86  E-value=1.8e-08  Score=68.24  Aligned_cols=63  Identities=11%  Similarity=-0.019  Sum_probs=55.1

Q ss_pred             HHHHHHHHHH--Hhhh-hhHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHhhhc
Q psy18096         68 GILASQELLD--SLIK-ERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCLIL  130 (131)
Q Consensus        68 y~~Ai~~~~~--~~~~-~~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~~~ka~~rrg~a~~~  130 (131)
                      |.+|+..|++  ++.| ....++.|+|.|+.++|+|++|+..++++++++|++..+|+.+|.++..
T Consensus        23 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~   88 (228)
T 4i17_A           23 YAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAAYRD   88 (228)
T ss_dssp             HHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHHHHHH
Confidence            8899999988  6666 6778888899999999999999999999999999999999999988754

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=98.85  E-value=1.2e-08  Score=69.47  Aligned_cols=62  Identities=18%  Similarity=0.140  Sum_probs=59.7

Q ss_pred             HHHHHHHHHH--HhhhhhHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHhhh
Q psy18096         68 GILASQELLD--SLIKERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCLI  129 (131)
Q Consensus        68 y~~Ai~~~~~--~~~~~~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~~~ka~~rrg~a~~  129 (131)
                      |.+|+..|++  +++|..+.++.|+|.++.++|++++|+..++++++++|++..+++.+|.++.
T Consensus        21 ~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~   84 (217)
T 2pl2_A           21 YDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEAYV   84 (217)
T ss_dssp             HHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence            9999999999  8889999999999999999999999999999999999999999999999875

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=98.84  E-value=2.1e-08  Score=61.72  Aligned_cols=62  Identities=21%  Similarity=0.237  Sum_probs=35.2

Q ss_pred             HHHHHHHHHH--HhhhhhHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHhhh
Q psy18096         68 GILASQELLD--SLIKERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCLI  129 (131)
Q Consensus        68 y~~Ai~~~~~--~~~~~~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~~~ka~~rrg~a~~  129 (131)
                      |.+|+.++++  ++.|....++.++|.++.++|++++|+..++++++++|++..+++..+.++.
T Consensus        66 ~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~  129 (133)
T 2lni_A           66 FQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMM  129 (133)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence            5555555555  4445555555556666666666666666666666555555555555555543

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=98.83  E-value=1.4e-08  Score=80.95  Aligned_cols=62  Identities=13%  Similarity=0.127  Sum_probs=41.8

Q ss_pred             HHHHHHHHHH--HhhhhhHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHhhh
Q psy18096         68 GILASQELLD--SLIKERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCLI  129 (131)
Q Consensus        68 y~~Ai~~~~~--~~~~~~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~~~ka~~rrg~a~~  129 (131)
                      |.+|+..|++  +++|....+|+|+|.++.++|++++|+..+++||+++|++..+|+.+|.++.
T Consensus        59 ~~eA~~~~~~Al~l~P~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~  122 (723)
T 4gyw_A           59 LQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHK  122 (723)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            6666666666  5666666666666666666666666666666666666666666666666654

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=98.83  E-value=9.3e-09  Score=61.86  Aligned_cols=48  Identities=10%  Similarity=0.105  Sum_probs=28.1

Q ss_pred             HHHHHHHHHH--HhhhhhHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCC
Q psy18096         68 GILASQELLD--SLIKERINCYNNLAQAQIKLGSLEPALMSLENVLNLDP  115 (131)
Q Consensus        68 y~~Ai~~~~~--~~~~~~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp  115 (131)
                      |.+|+..|++  +++|....+|.++|.||.++|++++|+..++++++++|
T Consensus        23 ~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~   72 (100)
T 3ma5_A           23 ASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAR   72 (100)
T ss_dssp             HHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhh
Confidence            5555555555  55555555566666666666666666666666665554

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=98.83  E-value=1.8e-08  Score=61.57  Aligned_cols=59  Identities=19%  Similarity=0.183  Sum_probs=36.9

Q ss_pred             HHHHHHH--HhhhhhHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHhhh
Q psy18096         71 ASQELLD--SLIKERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCLI  129 (131)
Q Consensus        71 Ai~~~~~--~~~~~~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~~~ka~~rrg~a~~  129 (131)
                      |+..|.+  +..|....++.++|.++..+|+|++|+..+.+++.++|++..+|+..|.++.
T Consensus         4 a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~   64 (115)
T 2kat_A            4 ITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQ   64 (115)
T ss_dssp             HHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHH
Confidence            4445554  4455566666666666666666666666666666666666666666666553

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=98.82  E-value=2.5e-08  Score=63.71  Aligned_cols=62  Identities=21%  Similarity=0.125  Sum_probs=47.0

Q ss_pred             HHHHHHHHHH--HhhhhhHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHhhh
Q psy18096         68 GILASQELLD--SLIKERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCLI  129 (131)
Q Consensus        68 y~~Ai~~~~~--~~~~~~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~~~ka~~rrg~a~~  129 (131)
                      |.+|+..|.+  .+.|....++.++|.++..+|+|++|+..+.+++.++|++..+|+..|.++.
T Consensus        29 ~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~   92 (166)
T 1a17_A           29 YENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNM   92 (166)
T ss_dssp             HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence            7777777777  5566677777777777777777777777777777777777777777777664

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=98.81  E-value=2.2e-08  Score=61.77  Aligned_cols=62  Identities=16%  Similarity=0.105  Sum_probs=44.3

Q ss_pred             HHHHHHHHHH--HhhhhhH---HHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCC---HHHHHHHHHhhh
Q psy18096         68 GILASQELLD--SLIKERI---NCYNNLAQAQIKLGSLEPALMSLENVLNLDPNN---IKALQRKAKCLI  129 (131)
Q Consensus        68 y~~Ai~~~~~--~~~~~~~---~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~~---~ka~~rrg~a~~  129 (131)
                      |.+|+..|+.  ...|...   .++.++|.++.++|+|++|+..+++++..+|++   ..+++..|.++.
T Consensus        18 ~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~   87 (129)
T 2xev_A           18 YDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQY   87 (129)
T ss_dssp             HHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHH
Confidence            7777777776  3344444   677777777777777777777777777777777   777777777764

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=98.80  E-value=3.8e-08  Score=60.04  Aligned_cols=61  Identities=18%  Similarity=0.091  Sum_probs=30.1

Q ss_pred             HHHHHHHHHH--HhhhhhHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHhh
Q psy18096         68 GILASQELLD--SLIKERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCL  128 (131)
Q Consensus        68 y~~Ai~~~~~--~~~~~~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~~~ka~~rrg~a~  128 (131)
                      |.+|+.++.+  ++.|....++.++|.++.++|++++|+..+.++++++|++..+++..|.++
T Consensus        62 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~  124 (131)
T 2vyi_A           62 YAGAVQDCERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAE  124 (131)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHhcCccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHH
Confidence            4444444444  334444445555555555555555555555555555555555555544443

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=98.80  E-value=2.2e-08  Score=72.69  Aligned_cols=62  Identities=23%  Similarity=0.197  Sum_probs=59.4

Q ss_pred             HHHHHHHHHH--HhhhhhHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHhhh
Q psy18096         68 GILASQELLD--SLIKERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCLI  129 (131)
Q Consensus        68 y~~Ai~~~~~--~~~~~~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~~~ka~~rrg~a~~  129 (131)
                      |.+|+..|++  +++|.+..+++|+|.+|..+|+|++|+.+++++++++|++..+++.+|.++.
T Consensus       212 ~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~  275 (336)
T 1p5q_A          212 FSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQ  275 (336)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence            9999999999  8889999999999999999999999999999999999999999999998875

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=98.79  E-value=2.1e-08  Score=76.18  Aligned_cols=62  Identities=21%  Similarity=0.125  Sum_probs=44.6

Q ss_pred             HHHHHHHHHH--HhhhhhHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHhhh
Q psy18096         68 GILASQELLD--SLIKERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCLI  129 (131)
Q Consensus        68 y~~Ai~~~~~--~~~~~~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~~~ka~~rrg~a~~  129 (131)
                      |.+|+..|++  ++.|....++.|+|.+|.++|+|++|+.+++++++++|++..+|+++|.++.
T Consensus        22 ~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~   85 (477)
T 1wao_1           22 YENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNM   85 (477)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            6667776666  5566677777777777777777777777777777777777777777777664

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=98.79  E-value=2.3e-08  Score=71.16  Aligned_cols=62  Identities=16%  Similarity=0.032  Sum_probs=58.0

Q ss_pred             HHHHHHHHHH--HhhhhhHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHhhh
Q psy18096         68 GILASQELLD--SLIKERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCLI  129 (131)
Q Consensus        68 y~~Ai~~~~~--~~~~~~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~~~ka~~rrg~a~~  129 (131)
                      |.+|+.+|++  +..|..+.+++|+|.++.++|+|++|+..++++|+++|+++.+|+++|.++.
T Consensus       182 ~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~  245 (291)
T 3mkr_A          182 LQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQ  245 (291)
T ss_dssp             HHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            8889988888  6678899999999999999999999999999999999999999999998765

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=98.79  E-value=1e-08  Score=81.73  Aligned_cols=62  Identities=24%  Similarity=0.209  Sum_probs=38.6

Q ss_pred             HHHHHHHHHH--HhhhhhHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHhhh
Q psy18096         68 GILASQELLD--SLIKERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCLI  129 (131)
Q Consensus        68 y~~Ai~~~~~--~~~~~~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~~~ka~~rrg~a~~  129 (131)
                      |.+|+..|++  +++|....+|+|+|.+|.++|++++|+..+++||+++|++..+|+.+|.++.
T Consensus        93 ~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~  156 (723)
T 4gyw_A           93 VQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQ  156 (723)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHH
Confidence            5666666655  5556666666666666666666666666666666666666666666665553

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=98.77  E-value=1.5e-08  Score=68.83  Aligned_cols=62  Identities=19%  Similarity=0.165  Sum_probs=51.2

Q ss_pred             HHHHHHHHHH--HhhhhhHHHHHHHHHHHHHh-----------CChHHHHHHHHHHHhhCCCCHHHHHHHHHhhh
Q psy18096         68 GILASQELLD--SLIKERINCYNNLAQAQIKL-----------GSLEPALMSLENVLNLDPNNIKALQRKAKCLI  129 (131)
Q Consensus        68 y~~Ai~~~~~--~~~~~~~~~~~N~a~~~~kl-----------~~~~~a~~~~~~al~~dp~~~ka~~rrg~a~~  129 (131)
                      |.+|+..|++  +++|....++.|+|.++.++           |++++|+..++++++++|++..+|+.+|.++.
T Consensus        55 ~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~  129 (217)
T 2pl2_A           55 VNPALENGKTLVARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYA  129 (217)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence            7888888877  77788888888888888888           88888888888888888888888888887765

>1q1c_A FK506-binding protein 4; rotamase, TPR repeat, nuclear protein, phosphorylation, isomerase; 1.90A {Homo sapiens} SCOP: d.26.1.1 d.26.1.1 PDB: 1n1a_A 1rot_A 1rou_A

Probab=98.77  E-value=4.3e-09  Score=75.26  Aligned_cols=50  Identities=32%  Similarity=0.677  Sum_probs=46.2

Q ss_pred             CcchhcccCCCcEEEEEEcCCCCCCCCCCCCCCCCCCceEEEEEeeccccC
Q psy18096          1 MDYVLPLMETGEECQIEITARFGYGDKGEPSKSIPPGAKLYYSLTLHSVLP   51 (131)
Q Consensus         1 ld~~l~~M~~gE~~~v~i~~~~ayG~~G~~~~~ip~~~~~~~~v~l~~~~~   51 (131)
                      +|.+|..|++||++.|+|+|.+|||+.|.+ +.||+++++.|+++|.++..
T Consensus       110 ~e~aL~gm~~Ge~~~v~ipp~~aYG~~g~~-~~Ip~~~~lvf~Vel~~i~~  159 (280)
T 1q1c_A          110 WDIAIATMKVGEVCHITCKPEYAYGSAGSP-PKIPPNATLVFEVELFEFKG  159 (280)
T ss_dssp             HHHHHTTCCTTCEEEEEECGGGTTTTTCBT-TTBCTTCCEEEEEEEEEEEC
T ss_pred             HHHHHhcCCCCCEEEEEECcHHhCCCcCcc-CCCCCCCcEEEEEEeeeecc
Confidence            478999999999999999999999999974 68999999999999999865

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=98.75  E-value=4e-08  Score=60.39  Aligned_cols=63  Identities=27%  Similarity=0.250  Sum_probs=59.3

Q ss_pred             HHHHHHHHHH--HhhhhhHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHhhhc
Q psy18096         68 GILASQELLD--SLIKERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCLIL  130 (131)
Q Consensus        68 y~~Ai~~~~~--~~~~~~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~~~ka~~rrg~a~~~  130 (131)
                      |.+|+..|++  +..|....++.++|.++..+|++++|+..++++++++|++..+++..|.++..
T Consensus        32 ~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~   96 (133)
T 2lni_A           32 YPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEA   96 (133)
T ss_dssp             SHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHHHH
Confidence            9999999999  67788899999999999999999999999999999999999999999998763

>1u79_A FKBP-type peptidyl-prolyl CIS-trans isomerase 3; TFKBP13, FK-506 binding protein; 1.85A {Arabidopsis thaliana} SCOP: d.26.1.1 PDB: 1y0o_A

Probab=98.75  E-value=1.4e-09  Score=69.27  Aligned_cols=45  Identities=31%  Similarity=0.589  Sum_probs=39.6

Q ss_pred             hcccCCCcEEEEEEcCCCCCCCCCCC----CCCCCCCceEEEEEeeccc
Q psy18096          5 LPLMETGEECQIEITARFGYGDKGEP----SKSIPPGAKLYYSLTLHSV   49 (131)
Q Consensus         5 l~~M~~gE~~~v~i~~~~ayG~~G~~----~~~ip~~~~~~~~v~l~~~   49 (131)
                      |+.|++||++.|+|+|.++||+.|.+    .+.|||++++.|+++|.++
T Consensus        80 ~~~m~~Ge~~~v~ip~~~aYG~~~~~~~~~~~~Ip~~~~l~f~vel~~i  128 (129)
T 1u79_A           80 IPPMLTGGKRTLRIPPELAYGDRGAGCKGGSCLIPPASVLLFDIEYIGK  128 (129)
T ss_dssp             BCCCBTTCEEEEEECGGGTTGGGCEEEETTEEEECTTCCEEEEEEEEEE
T ss_pred             ccccCCCCEEEEEEChHHccCCCCCCccccCCcCCCCCeEEEEEEEEEe
Confidence            45599999999999999999999853    2579999999999999875

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=98.75  E-value=4.4e-08  Score=63.29  Aligned_cols=53  Identities=17%  Similarity=0.041  Sum_probs=50.5

Q ss_pred             HHHHHHHHHH--HhhhhhHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHH
Q psy18096         68 GILASQELLD--SLIKERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKA  120 (131)
Q Consensus        68 y~~Ai~~~~~--~~~~~~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~~~ka  120 (131)
                      |.+|+..+++  +++|..+.+|.++|.||..+|+|++|+.++.++++++|+|..+
T Consensus        79 ~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~  133 (162)
T 3rkv_A           79 LHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASV  133 (162)
T ss_dssp             HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHH
T ss_pred             HHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHH
Confidence            9999999999  8899999999999999999999999999999999999999844

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=98.74  E-value=3.5e-08  Score=61.86  Aligned_cols=50  Identities=24%  Similarity=0.325  Sum_probs=46.7

Q ss_pred             hhhHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHhhhc
Q psy18096         81 KERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCLIL  130 (131)
Q Consensus        81 ~~~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~~~ka~~rrg~a~~~  130 (131)
                      +..+.++.|+|.++.+.|+|++|+..+++||+++|+++.+|+.+|.++..
T Consensus         5 ~d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~   54 (127)
T 4gcn_A            5 TDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFE   54 (127)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHH
Confidence            45678899999999999999999999999999999999999999999864

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=98.73  E-value=3.3e-08  Score=65.03  Aligned_cols=57  Identities=11%  Similarity=0.056  Sum_probs=50.7

Q ss_pred             HHHHHHHHHH--HhhhhhHHHHHHHHHHHHHhC-----------ChHHHHHHHHHHHhhCCCCHHHHHHHHH
Q psy18096         68 GILASQELLD--SLIKERINCYNNLAQAQIKLG-----------SLEPALMSLENVLNLDPNNIKALQRKAK  126 (131)
Q Consensus        68 y~~Ai~~~~~--~~~~~~~~~~~N~a~~~~kl~-----------~~~~a~~~~~~al~~dp~~~ka~~rrg~  126 (131)
                      +++||..|++  +++|....+|+|++.+|.++|           +|++|+.+|++||++||+|.  .|+++.
T Consensus        62 ~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~--~y~~al  131 (158)
T 1zu2_A           62 IQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNT--HYLKSL  131 (158)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCH--HHHHHH
T ss_pred             HHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCH--HHHHHH
Confidence            5699999999  899999999999999999985           89999999999999999986  445543

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=98.73  E-value=3.3e-08  Score=60.42  Aligned_cols=63  Identities=16%  Similarity=0.082  Sum_probs=58.3

Q ss_pred             HHHHHHHHHH--HhhhhhHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCC-------HHHHHHHHHhhhc
Q psy18096         68 GILASQELLD--SLIKERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNN-------IKALQRKAKCLIL  130 (131)
Q Consensus        68 y~~Ai~~~~~--~~~~~~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~~-------~ka~~rrg~a~~~  130 (131)
                      |.+|+.+|.+  ...|....++.++|.++..+|+|++|+..+.+++.++|++       ..++++.|.++..
T Consensus        20 ~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~   91 (131)
T 1elr_A           20 FDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFK   91 (131)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHHH
Confidence            8999999998  6778889999999999999999999999999999999888       9999999998763

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=98.71  E-value=7.9e-08  Score=65.07  Aligned_cols=62  Identities=11%  Similarity=-0.015  Sum_probs=58.0

Q ss_pred             HHHHHHHHHH--HhhhhhHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCH-------HHHHHHHHhhh
Q psy18096         68 GILASQELLD--SLIKERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNI-------KALQRKAKCLI  129 (131)
Q Consensus        68 y~~Ai~~~~~--~~~~~~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~~~-------ka~~rrg~a~~  129 (131)
                      |.+|+..|++  ++.|....++.++|.+|.++|++++|+..++++++++|++.       .+|+.+|.++.
T Consensus        58 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~  128 (228)
T 4i17_A           58 YKEAADYFDIAIKKNYNLANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQ  128 (228)
T ss_dssp             HHHHHHHHHHHHHTTCSHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCcchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHH
Confidence            9999999999  88899999999999999999999999999999999999999       66888888765

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=98.70  E-value=1.1e-07  Score=57.85  Aligned_cols=63  Identities=25%  Similarity=0.151  Sum_probs=59.2

Q ss_pred             HHHHHHHHHH--HhhhhhHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHhhhc
Q psy18096         68 GILASQELLD--SLIKERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCLIL  130 (131)
Q Consensus        68 y~~Ai~~~~~--~~~~~~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~~~ka~~rrg~a~~~  130 (131)
                      |.+|+..+.+  ...|....++.++|.++..+|++++|+..+.+++.++|++..+++..|.++..
T Consensus        28 ~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~   92 (131)
T 2vyi_A           28 FEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALSS   92 (131)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHHHH
Confidence            9999999998  67788899999999999999999999999999999999999999999998753

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=98.70  E-value=1.4e-07  Score=57.32  Aligned_cols=68  Identities=21%  Similarity=0.298  Sum_probs=55.8

Q ss_pred             cchhhhHHHH--------HHHHHHHHHH--H-------hhhhhHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHH
Q psy18096         58 LPVEKRLDFG--------GILASQELLD--S-------LIKERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKA  120 (131)
Q Consensus        58 ~~~~e~~~~~--------y~~Ai~~~~~--~-------~~~~~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~~~ka  120 (131)
                      ++..+..+.|        |.+|+..|..  .       .......++.++|.|+.++|++++|+...++++.++|++..+
T Consensus         3 Lsa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~   82 (104)
T 2v5f_A            3 LTAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRA   82 (104)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             CCHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHH
Confidence            4556666665        7888888777  1       123578899999999999999999999999999999999998


Q ss_pred             HHHHH
Q psy18096        121 LQRKA  125 (131)
Q Consensus       121 ~~rrg  125 (131)
                      +.+++
T Consensus        83 ~~n~~   87 (104)
T 2v5f_A           83 NGNLK   87 (104)
T ss_dssp             HHHHH
T ss_pred             HhhHH
Confidence            77765

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=98.70  E-value=6.2e-08  Score=59.87  Aligned_cols=62  Identities=19%  Similarity=0.022  Sum_probs=57.6

Q ss_pred             HHHHHHHHHH--HhhhhhHHHHHHHHHHHHHhCChHHHHHHHHHHHhhC------CCCHHHHHHHHHhhh
Q psy18096         68 GILASQELLD--SLIKERINCYNNLAQAQIKLGSLEPALMSLENVLNLD------PNNIKALQRKAKCLI  129 (131)
Q Consensus        68 y~~Ai~~~~~--~~~~~~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~d------p~~~ka~~rrg~a~~  129 (131)
                      |.+|+..+++  +++|....++.++|.++..+|++++|+.++.++++++      |++..++...+.+..
T Consensus        54 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~  123 (126)
T 3upv_A           54 FPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQ  123 (126)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHH
Confidence            9999999999  8889999999999999999999999999999999999      999988888777653

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=98.69  E-value=3.9e-08  Score=73.79  Aligned_cols=63  Identities=24%  Similarity=0.199  Sum_probs=58.5

Q ss_pred             HHHHHHHHHH--HhhhhhHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHhhhc
Q psy18096         68 GILASQELLD--SLIKERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCLIL  130 (131)
Q Consensus        68 y~~Ai~~~~~--~~~~~~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~~~ka~~rrg~a~~~  130 (131)
                      |.+|+..|++  +++|..+.++.++|.||.++|+|++|+..++++++++|++..+++++|.++..
T Consensus        41 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~  105 (537)
T 3fp2_A           41 FNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANES  105 (537)
T ss_dssp             CC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHH
Confidence            8889999988  77899999999999999999999999999999999999999999999998753

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=98.69  E-value=2e-08  Score=66.07  Aligned_cols=50  Identities=14%  Similarity=-0.011  Sum_probs=45.2

Q ss_pred             HHHHHHHHHH--Hh-------hhhhHHHH----HHHHHHHHHhCChHHHHHHHHHHHhhCCCC
Q psy18096         68 GILASQELLD--SL-------IKERINCY----NNLAQAQIKLGSLEPALMSLENVLNLDPNN  117 (131)
Q Consensus        68 y~~Ai~~~~~--~~-------~~~~~~~~----~N~a~~~~kl~~~~~a~~~~~~al~~dp~~  117 (131)
                      |.+|+..|++  ++       +|....+|    +|+|.++..+|++++|+.++++||+++|++
T Consensus        73 ~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d  135 (159)
T 2hr2_A           73 FDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEER  135 (159)
T ss_dssp             HHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence            7777777776  55       99999999    999999999999999999999999999976

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=98.68  E-value=5.2e-08  Score=63.35  Aligned_cols=53  Identities=13%  Similarity=0.075  Sum_probs=50.6

Q ss_pred             HhhhhhHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHhhhc
Q psy18096         78 SLIKERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCLIL  130 (131)
Q Consensus        78 ~~~~~~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~~~ka~~rrg~a~~~  130 (131)
                      +++|....++.++|.++.++|+|++|+..+++++.++|++..+|+.+|.++..
T Consensus        30 ~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~   82 (151)
T 3gyz_A           30 AIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQI   82 (151)
T ss_dssp             CSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            67899999999999999999999999999999999999999999999999864

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=98.68  E-value=1.2e-07  Score=62.09  Aligned_cols=62  Identities=15%  Similarity=0.079  Sum_probs=53.4

Q ss_pred             HHHHHHHHHH--HhhhhhHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHhhh
Q psy18096         68 GILASQELLD--SLIKERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCLI  129 (131)
Q Consensus        68 y~~Ai~~~~~--~~~~~~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~~~ka~~rrg~a~~  129 (131)
                      |.+|+..|++  +++|.++.++.++|.+|.++|++++|+..+.+++..+|++..+++..|..+.
T Consensus        21 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (184)
T 3vtx_A           21 FDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSANF   84 (184)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHH
Confidence            8888888888  7788888888889999888888888888888888888888888888877654

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=98.68  E-value=8.7e-08  Score=63.94  Aligned_cols=62  Identities=15%  Similarity=-0.013  Sum_probs=48.7

Q ss_pred             HHHHHHHHHH--HhhhhhHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCH----------------HHHHHHHHhhh
Q psy18096         68 GILASQELLD--SLIKERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNI----------------KALQRKAKCLI  129 (131)
Q Consensus        68 y~~Ai~~~~~--~~~~~~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~~~----------------ka~~rrg~a~~  129 (131)
                      |.+|+..|++  ++.|....++.|+|.+|.++|+|++|+..++++++++|++.                .+++.+|.++.
T Consensus        53 ~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  132 (213)
T 1hh8_A           53 MTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYA  132 (213)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCccchHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHH
Confidence            7778877777  66677778888888888888888888888888888777666                78888887765

>3jxv_A 70 kDa peptidyl-prolyl isomerase; FKBP- binding domain five-stranded anti-parallel beta-sheet alpha-helix crossing THis sheet; 2.08A {Triticum aestivum} PDB: 3jym_A

Probab=98.68  E-value=7.7e-09  Score=76.18  Aligned_cols=51  Identities=24%  Similarity=0.505  Sum_probs=45.5

Q ss_pred             CcchhcccCCCcEEEEEEcCCCCCCCCCC-CCCCCCCCceEEEEEeeccccC
Q psy18096          1 MDYVLPLMETGEECQIEITARFGYGDKGE-PSKSIPPGAKLYYSLTLHSVLP   51 (131)
Q Consensus         1 ld~~l~~M~~gE~~~v~i~~~~ayG~~G~-~~~~ip~~~~~~~~v~l~~~~~   51 (131)
                      +|.+|..|++||++.|+|+|.+|||+.|. ....|||++++.|+++|++|.+
T Consensus       304 ~e~~l~gm~~Ge~~~v~ip~~~aYG~~~~~~~~~Ip~~~~l~f~vel~~~~~  355 (356)
T 3jxv_A          304 LDRAVLNMKKGEVALVTIPPEYAYGSTESKQDAIVPPNSTVIYEVELVSFVK  355 (356)
T ss_dssp             HHHHHTTCCBTCEEEEEECGGGTTTTSCEESSSEECTTCCEEEEEEEEEEEC
T ss_pred             HHHHHhCCCCCCEEEEEEChHHccCCCCcCCCCcCCcCCeEEEEEEEEEEEc
Confidence            47899999999999999999999999884 2357999999999999999864

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=98.68  E-value=7e-08  Score=64.40  Aligned_cols=62  Identities=11%  Similarity=-0.066  Sum_probs=56.6

Q ss_pred             HHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHhhhc
Q psy18096         68 GILASQELLDSLIKERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCLIL  130 (131)
Q Consensus        68 y~~Ai~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~~~ka~~rrg~a~~~  130 (131)
                      |.+|+..|++-+.+ ...++.|+|.+|.++|+|++|+..++++++++|++..+|+.+|.++..
T Consensus        22 ~~~A~~~~~~a~~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~   83 (213)
T 1hh8_A           22 WKGALDAFSAVQDP-HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQ   83 (213)
T ss_dssp             HHHHHHHHHTSSSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHH
Confidence            89999999875433 678999999999999999999999999999999999999999998864

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=98.68  E-value=1.1e-07  Score=63.30  Aligned_cols=62  Identities=23%  Similarity=0.253  Sum_probs=58.4

Q ss_pred             HHHHHHHHHH--HhhhhhHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHhhh
Q psy18096         68 GILASQELLD--SLIKERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCLI  129 (131)
Q Consensus        68 y~~Ai~~~~~--~~~~~~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~~~ka~~rrg~a~~  129 (131)
                      |.+|+.++++  ++.|....++.++|.+|..+|+|++|+..+.++++++|++..++...+.++.
T Consensus       104 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~  167 (198)
T 2fbn_A          104 YPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVN  167 (198)
T ss_dssp             HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHH
Confidence            9999999999  7889999999999999999999999999999999999999999998888764

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=98.68  E-value=1.6e-07  Score=56.22  Aligned_cols=61  Identities=20%  Similarity=0.045  Sum_probs=57.2

Q ss_pred             HHHHHHHHHH--HhhhhhHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHhh
Q psy18096         68 GILASQELLD--SLIKERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCL  128 (131)
Q Consensus        68 y~~Ai~~~~~--~~~~~~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~~~ka~~rrg~a~  128 (131)
                      |.+|+..+.+  ++.|....++.++|.++.++|++++|+..+.++++++|++..+++..+.+.
T Consensus        54 ~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~  116 (118)
T 1elw_A           54 YQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNME  116 (118)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHhh
Confidence            8999999988  777888999999999999999999999999999999999999999988765

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=98.67  E-value=1.1e-07  Score=64.52  Aligned_cols=63  Identities=29%  Similarity=0.265  Sum_probs=55.9

Q ss_pred             HHHHHHHHHH--HhhhhhHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHhhhc
Q psy18096         68 GILASQELLD--SLIKERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCLIL  130 (131)
Q Consensus        68 y~~Ai~~~~~--~~~~~~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~~~ka~~rrg~a~~~  130 (131)
                      |.+|+..|++  ++.|....++.++|.++.++|++++|+..++++++++|++..+|+..|.++..
T Consensus       155 ~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~  219 (258)
T 3uq3_A          155 WPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIA  219 (258)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHH
Confidence            8888888888  67788888999999999999999999999999999999999999999988753

>2lkn_A AH receptor-interacting protein; FKBP-type domain, immunophilin homolog, protein binding; NMR {Homo sapiens}

Probab=98.65  E-value=5e-09  Score=69.34  Aligned_cols=54  Identities=11%  Similarity=0.002  Sum_probs=40.6

Q ss_pred             CcchhcccCCCcEEEEEEcCCCCCCCC-------CCCCCC-----------------------------CCCCceEEEEE
Q psy18096          1 MDYVLPLMETGEECQIEITARFGYGDK-------GEPSKS-----------------------------IPPGAKLYYSL   44 (131)
Q Consensus         1 ld~~l~~M~~gE~~~v~i~~~~ayG~~-------G~~~~~-----------------------------ip~~~~~~~~v   44 (131)
                      +|.+|.+|++||+++|+|+|++|||..       ..+...                             |++++++.|+|
T Consensus        72 wd~gl~~M~~Ge~~~~~ipp~laYG~p~v~~~~r~~~~~~~p~~~~~~~~g~~~~~~~~~~g~~d~~~li~~p~~L~FeI  151 (165)
T 2lkn_A           72 WETIVCTMREGEIAQFLCDIKHVVLYPLVAKSLRNIAVGKDPLEGQRHCCGVAQMREHSSLGHADLDALQQNPQPLIFHM  151 (165)
T ss_dssp             HHHHHTTCCTTCEEEEECCHHHHSSHHHHHHHHTTGGGSSTTTTTCSCCSSCCSCCCCCCCCCSTTTHHHHSCCCCEEEE
T ss_pred             HHHHHhcCccCceEEEEECHHHhcCCcchhhhhhhccccCCCccccccceeeeeccccccccccccccccCCCCCeEEEE
Confidence            378999999999999999999999921       001111                             23447799999


Q ss_pred             eeccccCCcc
Q psy18096         45 TLHSVLPDFD   54 (131)
Q Consensus        45 ~l~~~~~~~~   54 (131)
                      +|.++.+..+
T Consensus       152 ELl~Ve~P~e  161 (165)
T 2lkn_A          152 EMLKVESPGT  161 (165)
T ss_dssp             EEEEEECTTT
T ss_pred             EEEEEcCCcc
Confidence            9999987544

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=98.64  E-value=1.4e-07  Score=61.49  Aligned_cols=57  Identities=23%  Similarity=0.146  Sum_probs=50.3

Q ss_pred             HHHHHHHHHH--Hhh-h-hhHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHH
Q psy18096         68 GILASQELLD--SLI-K-ERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRK  124 (131)
Q Consensus        68 y~~Ai~~~~~--~~~-~-~~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~~~ka~~rr  124 (131)
                      .+++|.+++.  +.+ | ....+++|+|.+|.++++|++|++.|+++|+++|+|..|..-+
T Consensus        51 ~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ieP~n~QA~~Lk  111 (152)
T 1pc2_A           51 IRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELE  111 (152)
T ss_dssp             HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence            7899999998  444 5 5789999999999999999999999999999999998876543

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=98.63  E-value=1.4e-07  Score=74.39  Aligned_cols=62  Identities=19%  Similarity=0.097  Sum_probs=56.0

Q ss_pred             HHHHHHHHHH--HhhhhhHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHhhh
Q psy18096         68 GILASQELLD--SLIKERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCLI  129 (131)
Q Consensus        68 y~~Ai~~~~~--~~~~~~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~~~ka~~rrg~a~~  129 (131)
                      |.+|+..|++  +++|....+++|+|.++.++|+|++|+.++++|++++|++..+|+.+|.++.
T Consensus       449 ~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~  512 (681)
T 2pzi_A          449 VAKATRKLDDLAERVGWRWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELAPKLALAATAE  512 (681)
T ss_dssp             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence            8899999888  7788889999999999999999999999999999999999999999988875

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=98.63  E-value=2e-07  Score=63.41  Aligned_cols=62  Identities=15%  Similarity=0.068  Sum_probs=54.6

Q ss_pred             HHHHHHHHHH--Hhhhh---hHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHH---HHHHHHHhhh
Q psy18096         68 GILASQELLD--SLIKE---RINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIK---ALQRKAKCLI  129 (131)
Q Consensus        68 y~~Ai~~~~~--~~~~~---~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~~~k---a~~rrg~a~~  129 (131)
                      |.+|+..|++  +..|.   ...++.++|.+|.++|+|++|+..++++++.+|++..   |+|++|.++.
T Consensus        20 ~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g~~~~   89 (225)
T 2yhc_A           20 WRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNM   89 (225)
T ss_dssp             HHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHHHHHH
Confidence            9999999998  43333   4579999999999999999999999999999999975   8999998874

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=98.61  E-value=3.3e-07  Score=55.28  Aligned_cols=62  Identities=26%  Similarity=0.239  Sum_probs=47.5

Q ss_pred             HHHHHHHHHH--HhhhhhHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHhhh
Q psy18096         68 GILASQELLD--SLIKERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCLI  129 (131)
Q Consensus        68 y~~Ai~~~~~--~~~~~~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~~~ka~~rrg~a~~  129 (131)
                      |.+|+.++.+  +..|....++.++|.++.++|++++|+..++++++++|++..+++..|.++.
T Consensus        59 ~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~  122 (125)
T 1na0_A           59 YDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ  122 (125)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence            7777777776  5556667777788888888888888888888888888888888877777654

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=98.61  E-value=3.3e-07  Score=55.25  Aligned_cols=63  Identities=24%  Similarity=0.226  Sum_probs=58.0

Q ss_pred             HHHHHHHHHH--HhhhhhHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHhhhc
Q psy18096         68 GILASQELLD--SLIKERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCLIL  130 (131)
Q Consensus        68 y~~Ai~~~~~--~~~~~~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~~~ka~~rrg~a~~~  130 (131)
                      |.+|+..+.+  ...|....++.++|.++.++|++++|+..+++++.++|++..+++..|.++..
T Consensus        25 ~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~   89 (125)
T 1na0_A           25 YDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYK   89 (125)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHH
Confidence            8999999988  66777889999999999999999999999999999999999999999988753

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=98.61  E-value=1.5e-07  Score=70.02  Aligned_cols=62  Identities=23%  Similarity=0.157  Sum_probs=57.7

Q ss_pred             HHHHHHHHHH--HhhhhhHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHhhhc
Q psy18096         68 GILASQELLD--SLIKERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCLIL  130 (131)
Q Consensus        68 y~~Ai~~~~~--~~~~~~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~~~ka~~rrg~a~~~  130 (131)
                      |.+|+..|++  ...| ...++.++|.|+.++|+|++|+..++++++++|++..+|+.+|.++..
T Consensus        22 ~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~   85 (514)
T 2gw1_A           22 YDDAIKYYNWALELKE-DPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEG   85 (514)
T ss_dssp             HHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCc-cHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHHHH
Confidence            9999999999  5566 688999999999999999999999999999999999999999999864

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=98.58  E-value=2.9e-07  Score=70.66  Aligned_cols=62  Identities=10%  Similarity=0.027  Sum_probs=41.4

Q ss_pred             HHHHHHHHHH--HhhhhhHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHhhh
Q psy18096         68 GILASQELLD--SLIKERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCLI  129 (131)
Q Consensus        68 y~~Ai~~~~~--~~~~~~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~~~ka~~rrg~a~~  129 (131)
                      |.+|+..|++  ++.|....++.|+|.+|..+|++++|+..++++++++|++..+++..|.++.
T Consensus        39 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  102 (568)
T 2vsy_A           39 TTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALE  102 (568)
T ss_dssp             HHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence            6667766666  5556666666666666666666666666666666666666666666666654

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=98.58  E-value=2.1e-07  Score=63.93  Aligned_cols=63  Identities=21%  Similarity=0.305  Sum_probs=55.8

Q ss_pred             HHHHHHHHHH--HhhhhhHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHhhhc
Q psy18096         68 GILASQELLD--SLIKERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCLIL  130 (131)
Q Consensus        68 y~~Ai~~~~~--~~~~~~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~~~ka~~rrg~a~~~  130 (131)
                      |.+|+..|.+  ++.|....++.++|.++..+|+|++|+..++++++++|++..+++..|.++..
T Consensus        59 ~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~  123 (275)
T 1xnf_A           59 RALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYY  123 (275)
T ss_dssp             HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCccccHHHHHHHHHHHH
Confidence            8888888888  67788888999999999999999999999999999999999999999888753

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=98.58  E-value=2.7e-07  Score=60.12  Aligned_cols=63  Identities=21%  Similarity=0.150  Sum_probs=58.3

Q ss_pred             HHHHHHHHHH--HhhhhhHHHHHHHHHH-HHHhCCh--HHHHHHHHHHHhhCCCCHHHHHHHHHhhhc
Q psy18096         68 GILASQELLD--SLIKERINCYNNLAQA-QIKLGSL--EPALMSLENVLNLDPNNIKALQRKAKCLIL  130 (131)
Q Consensus        68 y~~Ai~~~~~--~~~~~~~~~~~N~a~~-~~kl~~~--~~a~~~~~~al~~dp~~~ka~~rrg~a~~~  130 (131)
                      |.+|+.+|.+  .+.|....++.++|.+ +...|++  ++|+..++++++++|++..+++..|.++..
T Consensus        60 ~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~  127 (177)
T 2e2e_A           60 YSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITALMLLASDAFM  127 (177)
T ss_dssp             HHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence            9999999998  7788889999999999 8899999  999999999999999999999999998763

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=98.58  E-value=8.8e-08  Score=60.75  Aligned_cols=59  Identities=15%  Similarity=0.000  Sum_probs=52.5

Q ss_pred             HHHHHHHHHH--HhhhhhHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHH
Q psy18096         68 GILASQELLD--SLIKERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAK  126 (131)
Q Consensus        68 y~~Ai~~~~~--~~~~~~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~~~ka~~rrg~  126 (131)
                      |.+|+..|++  .++|..+.++.|+|.|+..+|++++|+..++++++++|+++....-+.+
T Consensus        68 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~  128 (142)
T 2xcb_A           68 YEQALQSYSYGALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEALAAR  128 (142)
T ss_dssp             HHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCGGGHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHH
Confidence            9999999999  8889999999999999999999999999999999999988655444433

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=98.58  E-value=7.7e-08  Score=70.78  Aligned_cols=63  Identities=17%  Similarity=0.127  Sum_probs=58.9

Q ss_pred             HHHHHHHHHH--HhhhhhHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHhhhc
Q psy18096         68 GILASQELLD--SLIKERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCLIL  130 (131)
Q Consensus        68 y~~Ai~~~~~--~~~~~~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~~~ka~~rrg~a~~~  130 (131)
                      |.+|+.+|++  +..|....++.++|.++.++|++++|+..++++++++|++..+++..|.++..
T Consensus        42 ~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~  106 (450)
T 2y4t_A           42 LADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLK  106 (450)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence            9999999998  67788999999999999999999999999999999999999999999998763

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=98.57  E-value=5.7e-07  Score=64.62  Aligned_cols=63  Identities=21%  Similarity=0.152  Sum_probs=59.8

Q ss_pred             HHHHHHHHHH--HhhhhhHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHhhhc
Q psy18096         68 GILASQELLD--SLIKERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCLIL  130 (131)
Q Consensus        68 y~~Ai~~~~~--~~~~~~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~~~ka~~rrg~a~~~  130 (131)
                      |.+|+.+|++  +..|....++.++|.+|.++|++++|+..++++++++|++..+|+..|.++..
T Consensus        81 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~  145 (365)
T 4eqf_A           81 LPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTN  145 (365)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHc
Confidence            9999999999  77899999999999999999999999999999999999999999999998753

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=98.57  E-value=1.3e-07  Score=60.74  Aligned_cols=53  Identities=17%  Similarity=-0.039  Sum_probs=49.8

Q ss_pred             HHHHHHHHHH--HhhhhhHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHH
Q psy18096         68 GILASQELLD--SLIKERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKA  120 (131)
Q Consensus        68 y~~Ai~~~~~--~~~~~~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~~~ka  120 (131)
                      |.+|+..|++  .++|..+.++.|+|.||..+|++++|+..++++++++|+++..
T Consensus        71 ~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~  125 (148)
T 2vgx_A           71 YDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEF  125 (148)
T ss_dssp             HHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGG
T ss_pred             HHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcc
Confidence            9999999999  8889999999999999999999999999999999999987654

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=98.57  E-value=2.7e-07  Score=56.57  Aligned_cols=55  Identities=13%  Similarity=0.023  Sum_probs=51.4

Q ss_pred             HHHHHHHHHH--HhhhhhHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHH
Q psy18096         68 GILASQELLD--SLIKERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQ  122 (131)
Q Consensus        68 y~~Ai~~~~~--~~~~~~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~~~ka~~  122 (131)
                      |.+|+..+++  ++.|....++.|+|.|+.++|++++|+..+.+++..+|++.....
T Consensus        43 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~   99 (117)
T 3k9i_A           43 YRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVELLLKIIAETSDDETIQS   99 (117)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHH
Confidence            9999999999  888999999999999999999999999999999999999876643

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.56  E-value=4.3e-07  Score=56.77  Aligned_cols=61  Identities=21%  Similarity=0.177  Sum_probs=56.3

Q ss_pred             HHHHHHHHHH--HhhhhhHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHhh
Q psy18096         68 GILASQELLD--SLIKERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCL  128 (131)
Q Consensus        68 y~~Ai~~~~~--~~~~~~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~~~ka~~rrg~a~  128 (131)
                      |.+|+..+++  ++.|....++.++|.++..+|++++|+..+.++++++|++..++...+.+.
T Consensus        81 ~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~  143 (148)
T 2dba_A           81 YDKAETEASKAIEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNIS  143 (148)
T ss_dssp             HHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Confidence            8999999988  777888999999999999999999999999999999999999988877664

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=98.55  E-value=2.6e-07  Score=68.04  Aligned_cols=62  Identities=16%  Similarity=0.085  Sum_probs=58.0

Q ss_pred             HHHHHHHHHH--HhhhhhHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHhhh
Q psy18096         68 GILASQELLD--SLIKERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCLI  129 (131)
Q Consensus        68 y~~Ai~~~~~--~~~~~~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~~~ka~~rrg~a~~  129 (131)
                      |.+|+.++++  +++|....++.++|.+|.++|+|++|+.++++|++++|++..++...+.++.
T Consensus       289 ~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~  352 (370)
T 1ihg_A          289 WQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQ  352 (370)
T ss_dssp             HHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            8999999999  7889999999999999999999999999999999999999999988887764

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=98.55  E-value=5.1e-07  Score=62.39  Aligned_cols=63  Identities=14%  Similarity=0.012  Sum_probs=56.1

Q ss_pred             HHHHHHHHHH--Hhhhhh---HHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCC---HHHHHHHHHhhhc
Q psy18096         68 GILASQELLD--SLIKER---INCYNNLAQAQIKLGSLEPALMSLENVLNLDPNN---IKALQRKAKCLIL  130 (131)
Q Consensus        68 y~~Ai~~~~~--~~~~~~---~~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~~---~ka~~rrg~a~~~  130 (131)
                      |.+|+..|++  +..|..   ..++.++|.||.++|+|++|+..++++++++|++   ..++|+.|.++..
T Consensus        31 ~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~  101 (261)
T 3qky_A           31 YDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYERAMCYYK  101 (261)
T ss_dssp             HHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHHH
Confidence            9999999999  555555   8999999999999999999999999999998854   7899999999853

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=98.54  E-value=3.6e-07  Score=69.13  Aligned_cols=62  Identities=19%  Similarity=0.078  Sum_probs=58.4

Q ss_pred             HHHHHHHHHH--Hhhh---hhHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHhhh
Q psy18096         68 GILASQELLD--SLIK---ERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCLI  129 (131)
Q Consensus        68 y~~Ai~~~~~--~~~~---~~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~~~ka~~rrg~a~~  129 (131)
                      |.+|+..|++  +++|   ....++.|+|.+|.++|+|++|+..++++++++|++..+++.++.++.
T Consensus       237 ~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~  303 (474)
T 4abn_A          237 SQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLE  303 (474)
T ss_dssp             HHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            8889999988  7788   899999999999999999999999999999999999999999998875

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=98.54  E-value=5.8e-07  Score=63.55  Aligned_cols=62  Identities=18%  Similarity=0.135  Sum_probs=55.6

Q ss_pred             HHHHHHHHHH--HhhhhhHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHhhh
Q psy18096         68 GILASQELLD--SLIKERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCLI  129 (131)
Q Consensus        68 y~~Ai~~~~~--~~~~~~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~~~ka~~rrg~a~~  129 (131)
                      |.+|+..|++  +..|....++.++|.++..+|+|++|+..++++++++|++..+++..|.++.
T Consensus        19 ~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~   82 (359)
T 3ieg_A           19 LADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLL   82 (359)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHH
Confidence            8899999888  7778888899999999999999999999999999999999999999988875

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=98.53  E-value=5.9e-07  Score=57.19  Aligned_cols=60  Identities=25%  Similarity=0.334  Sum_probs=54.5

Q ss_pred             HHHHHHHHHH--HhhhhhHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHh
Q psy18096         68 GILASQELLD--SLIKERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKC  127 (131)
Q Consensus        68 y~~Ai~~~~~--~~~~~~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~~~ka~~rrg~a  127 (131)
                      |.+|+..+.+  .+.|....++.++|.++.++|++++|+..+.++++++|++..++...+.+
T Consensus        63 ~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~  124 (166)
T 1a17_A           63 YGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQEC  124 (166)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            8999999998  77888999999999999999999999999999999999999988555444

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=98.53  E-value=4.2e-07  Score=65.32  Aligned_cols=62  Identities=16%  Similarity=0.112  Sum_probs=55.9

Q ss_pred             HHHHHHHHHH--HhhhhhHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHhhh
Q psy18096         68 GILASQELLD--SLIKERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCLI  129 (131)
Q Consensus        68 y~~Ai~~~~~--~~~~~~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~~~ka~~rrg~a~~  129 (131)
                      |.+|+.+|++  ++.|....++.|+|.++.++|++++|+..++++++++|++..+|+..|.++.
T Consensus       229 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~  292 (365)
T 4eqf_A          229 FNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCI  292 (365)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHH
Confidence            8889988888  7778888899999999999999999999999999999999999999998875

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=98.50  E-value=3.5e-07  Score=54.64  Aligned_cols=48  Identities=19%  Similarity=0.261  Sum_probs=44.9

Q ss_pred             hHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHhhhc
Q psy18096         83 RINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCLIL  130 (131)
Q Consensus        83 ~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~~~ka~~rrg~a~~~  130 (131)
                      .+..+.++|.++.++|+|++|+..++++++++|++..+|+.+|.++..
T Consensus         3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~   50 (111)
T 2l6j_A            3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIK   50 (111)
T ss_dssp             HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence            467899999999999999999999999999999999999999998864

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=98.49  E-value=1e-07  Score=57.20  Aligned_cols=51  Identities=22%  Similarity=0.171  Sum_probs=46.9

Q ss_pred             hhhhHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHhhhc
Q psy18096         80 IKERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCLIL  130 (131)
Q Consensus        80 ~~~~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~~~ka~~rrg~a~~~  130 (131)
                      +|..+.++.++|.+|.++|+|++|+..++++++++|++..+|+.+|.++..
T Consensus         3 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~   53 (100)
T 3ma5_A            3 DPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYER   53 (100)
T ss_dssp             --CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHH
T ss_pred             CccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence            577889999999999999999999999999999999999999999999864

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=98.49  E-value=6.1e-07  Score=64.18  Aligned_cols=63  Identities=19%  Similarity=0.101  Sum_probs=59.8

Q ss_pred             HHHHHHHHHH--HhhhhhHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHhhhc
Q psy18096         68 GILASQELLD--SLIKERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCLIL  130 (131)
Q Consensus        68 y~~Ai~~~~~--~~~~~~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~~~ka~~rrg~a~~~  130 (131)
                      |.+|+.+|++  +..|....++.++|.++.++|++++|+..+.++++++|++..+++..|.++..
T Consensus        80 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~  144 (368)
T 1fch_A           80 LPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTN  144 (368)
T ss_dssp             HHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence            9999999999  77899999999999999999999999999999999999999999999998753

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=98.48  E-value=3.1e-07  Score=63.13  Aligned_cols=61  Identities=15%  Similarity=0.174  Sum_probs=46.1

Q ss_pred             HHHHHHHHHH--HhhhhhHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHH-Hhh
Q psy18096         68 GILASQELLD--SLIKERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKA-KCL  128 (131)
Q Consensus        68 y~~Ai~~~~~--~~~~~~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~~~ka~~rrg-~a~  128 (131)
                      |.+|+..|++  ++.|....++.++|.+|..+|+|++|+..++++++++|++..+|+.+| .++
T Consensus        90 ~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~  153 (272)
T 3u4t_A           90 DSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYY  153 (272)
T ss_dssp             HHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHH
Confidence            7777777777  666777777777777777777777777777777777777777777777 544

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=98.47  E-value=9.9e-07  Score=60.49  Aligned_cols=63  Identities=13%  Similarity=0.028  Sum_probs=57.3

Q ss_pred             HHHHHHHHHH--Hh----hhhhHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHhhhc
Q psy18096         68 GILASQELLD--SL----IKERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCLIL  130 (131)
Q Consensus        68 y~~Ai~~~~~--~~----~~~~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~~~ka~~rrg~a~~~  130 (131)
                      |.+|+..|++  +.    .+....++.++|.++..+|+|++|+..++++++++|++..+|+..|.++..
T Consensus        21 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~   89 (275)
T 1xnf_A           21 QEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQ   89 (275)
T ss_dssp             HHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH
Confidence            8899999988  32    467899999999999999999999999999999999999999999998753

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=98.46  E-value=8.1e-07  Score=63.52  Aligned_cols=62  Identities=18%  Similarity=0.111  Sum_probs=47.9

Q ss_pred             HHHHHHHHHH--HhhhhhHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHhhh
Q psy18096         68 GILASQELLD--SLIKERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCLI  129 (131)
Q Consensus        68 y~~Ai~~~~~--~~~~~~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~~~ka~~rrg~a~~  129 (131)
                      |.+|+..|++  ++.|....++.++|.++.++|++++|+..++++++++|++..+++..|.++.
T Consensus       233 ~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~  296 (368)
T 1fch_A          233 YDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCI  296 (368)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence            7777777777  5667777778888888888888888888888888888888888877777764

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=98.46  E-value=1.6e-07  Score=74.16  Aligned_cols=61  Identities=13%  Similarity=0.007  Sum_probs=44.6

Q ss_pred             HHHHHHHHHH--HhhhhhHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHhhh
Q psy18096         68 GILASQELLD--SLIKERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCLI  129 (131)
Q Consensus        68 y~~Ai~~~~~--~~~~~~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~~~ka~~rrg~a~~  129 (131)
                      |.+|+..|++  +++|....+++|+|.++.++|+|++ +..+++|++++|++..+|+.+|.++.
T Consensus       483 ~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~  545 (681)
T 2pzi_A          483 YDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARS  545 (681)
T ss_dssp             HHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHH
Confidence            8888888888  6666677777777777777777777 77777777777777777777776664

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=98.45  E-value=1.2e-06  Score=59.25  Aligned_cols=52  Identities=10%  Similarity=0.127  Sum_probs=49.2

Q ss_pred             hhhhhHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHhhhc
Q psy18096         79 LIKERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCLIL  130 (131)
Q Consensus        79 ~~~~~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~~~ka~~rrg~a~~~  130 (131)
                      ..|....++.++|.++..+|+|++|+..++++++++|++..+++..|.++..
T Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~  185 (258)
T 3uq3_A          134 VNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAK  185 (258)
T ss_dssp             CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             cCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHH
Confidence            6788999999999999999999999999999999999999999999998763

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=98.45  E-value=5.4e-07  Score=65.33  Aligned_cols=62  Identities=21%  Similarity=0.196  Sum_probs=46.4

Q ss_pred             HHHHHHHHHH--HhhhhhHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHhhh
Q psy18096         68 GILASQELLD--SLIKERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCLI  129 (131)
Q Consensus        68 y~~Ai~~~~~--~~~~~~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~~~ka~~rrg~a~~  129 (131)
                      |.+|+..+++  ++.|....++.+++.++.++|++++|+..++++++++|++..+|++.|.++.
T Consensus       321 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~  384 (388)
T 1w3b_A          321 IEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLK  384 (388)
T ss_dssp             HHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHhHHHHHH
Confidence            5566666665  5567777777888888888888888888888888888888888888777764

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=98.44  E-value=1.8e-07  Score=61.01  Aligned_cols=60  Identities=15%  Similarity=0.099  Sum_probs=54.7

Q ss_pred             HHHHHHHHHH--HhhhhhHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHh
Q psy18096         68 GILASQELLD--SLIKERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKC  127 (131)
Q Consensus        68 y~~Ai~~~~~--~~~~~~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~~~ka~~rrg~a  127 (131)
                      |.+|+..+..  +..|....++.++|.+|..+|+|++|+..+.++++++|++..+++..|.+
T Consensus        26 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~   87 (177)
T 2e2e_A           26 PEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATV   87 (177)
T ss_dssp             -CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence            6777777777  66788899999999999999999999999999999999999999999998

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=98.44  E-value=2.4e-07  Score=57.53  Aligned_cols=52  Identities=25%  Similarity=0.122  Sum_probs=43.7

Q ss_pred             HHHHHHHHHH--HhhhhhHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHH
Q psy18096         68 GILASQELLD--SLIKERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIK  119 (131)
Q Consensus        68 y~~Ai~~~~~--~~~~~~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~~~k  119 (131)
                      |.+|+..|++  +++|....++.++|.++..+|++++|+..++++++++|++.+
T Consensus        67 ~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~  120 (121)
T 1hxi_A           67 DGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQ  120 (121)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCCC
Confidence            8999999999  889999999999999999999999999999999999998764

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=98.44  E-value=9e-07  Score=51.00  Aligned_cols=49  Identities=27%  Similarity=0.370  Sum_probs=45.5

Q ss_pred             hhHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHhhhc
Q psy18096         82 ERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCLIL  130 (131)
Q Consensus        82 ~~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~~~ka~~rrg~a~~~  130 (131)
                      ....++.++|.++..+++|++|+..+.+++.++|++..+++..|.++..
T Consensus         7 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~   55 (91)
T 1na3_A            7 NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYK   55 (91)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence            4567899999999999999999999999999999999999999998864

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=98.43  E-value=1.5e-06  Score=52.75  Aligned_cols=63  Identities=21%  Similarity=0.187  Sum_probs=53.8

Q ss_pred             HHHHHHHHHH--HhhhhhHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHhhhc
Q psy18096         68 GILASQELLD--SLIKERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCLIL  130 (131)
Q Consensus        68 y~~Ai~~~~~--~~~~~~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~~~ka~~rrg~a~~~  130 (131)
                      |.+|+..+.+  ...|....++.++|.++..+|++++|+..+++++..+|++..+++..|.++..
T Consensus        51 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~  115 (136)
T 2fo7_A           51 YDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK  115 (136)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence            7888888887  56677788888999999999999999999999999999999999888887753

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=98.43  E-value=1.7e-07  Score=68.12  Aligned_cols=60  Identities=10%  Similarity=0.004  Sum_probs=43.3

Q ss_pred             HHHHHHHHHH--HhhhhhHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHh
Q psy18096         68 GILASQELLD--SLIKERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKC  127 (131)
Q Consensus        68 y~~Ai~~~~~--~~~~~~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~~~ka~~rrg~a  127 (131)
                      |.+|+.+|++  +++|.+..+++|+|.+|..+|+|++|+.++.++++++|++..++...+.+
T Consensus       246 ~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l  307 (338)
T 2if4_A          246 YDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRAL  307 (338)
T ss_dssp             CHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------------
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence            8999999998  78899999999999999999999999999999999999999988877655

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=98.42  E-value=5.5e-07  Score=63.17  Aligned_cols=61  Identities=16%  Similarity=0.230  Sum_probs=57.1

Q ss_pred             HHHHHHHHHH--HhhhhhHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHhh
Q psy18096         68 GILASQELLD--SLIKERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCL  128 (131)
Q Consensus        68 y~~Ai~~~~~--~~~~~~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~~~ka~~rrg~a~  128 (131)
                      |.+|+.++++  ++.|....++.++|.++.++|++++|+..++++++++|++..+++..|.++
T Consensus       252 ~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~  314 (330)
T 3hym_B          252 YAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCI  314 (330)
T ss_dssp             HHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHH
Confidence            8899999988  777888999999999999999999999999999999999999999999987

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=98.41  E-value=1.6e-06  Score=58.34  Aligned_cols=62  Identities=13%  Similarity=-0.032  Sum_probs=42.9

Q ss_pred             HHHHHHHHHH--HhhhhhHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHhhh
Q psy18096         68 GILASQELLD--SLIKERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCLI  129 (131)
Q Consensus        68 y~~Ai~~~~~--~~~~~~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~~~ka~~rrg~a~~  129 (131)
                      |.+|+..+.+  ++.|....++.++|.++..+|++++|+..++++++.+|++..+++..|.++.
T Consensus        73 ~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~  136 (243)
T 2q7f_A           73 LERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLV  136 (243)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            7777777776  5556666667777777777777777777777777777777777766666654

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=98.41  E-value=1.9e-06  Score=55.30  Aligned_cols=61  Identities=26%  Similarity=0.171  Sum_probs=30.6

Q ss_pred             HHHHHHHHHH--HhhhhhHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHhh
Q psy18096         68 GILASQELLD--SLIKERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCL  128 (131)
Q Consensus        68 y~~Ai~~~~~--~~~~~~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~~~ka~~rrg~a~  128 (131)
                      |.+|+.++++  ...|....++.++|.++.++|++++|+..+.++++.+|++..+++..|.++
T Consensus        92 ~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~  154 (186)
T 3as5_A           92 YDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSY  154 (186)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHH
Confidence            4444444444  333444455555555555555555555555555555555555555555444

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=98.40  E-value=1.9e-06  Score=57.09  Aligned_cols=62  Identities=15%  Similarity=0.021  Sum_probs=39.5

Q ss_pred             HHHHHHHHHH--HhhhhhHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHhhh
Q psy18096         68 GILASQELLD--SLIKERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCLI  129 (131)
Q Consensus        68 y~~Ai~~~~~--~~~~~~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~~~ka~~rrg~a~~  129 (131)
                      |.+|+..+.+  +..|....++.++|.++..+|++++|+..++++++++|++..+++..|.++.
T Consensus        24 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~   87 (225)
T 2vq2_A           24 YRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLC   87 (225)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence            5666666665  4455556666666666666666666666666666666666666666666554

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=98.40  E-value=2.1e-06  Score=55.11  Aligned_cols=63  Identities=14%  Similarity=0.053  Sum_probs=58.9

Q ss_pred             HHHHHHHHHH--HhhhhhHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHhhhc
Q psy18096         68 GILASQELLD--SLIKERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCLIL  130 (131)
Q Consensus        68 y~~Ai~~~~~--~~~~~~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~~~ka~~rrg~a~~~  130 (131)
                      |.+|+.++.+  +..|....++.++|.++..+|++++|+..+++++..+|++..+++..|.++..
T Consensus        58 ~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~  122 (186)
T 3as5_A           58 VDRGTELLERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDN  122 (186)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHH
Confidence            9999999998  67788899999999999999999999999999999999999999999988753

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=98.38  E-value=3e-06  Score=51.35  Aligned_cols=63  Identities=21%  Similarity=0.187  Sum_probs=57.4

Q ss_pred             HHHHHHHHHH--HhhhhhHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHhhhc
Q psy18096         68 GILASQELLD--SLIKERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCLIL  130 (131)
Q Consensus        68 y~~Ai~~~~~--~~~~~~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~~~ka~~rrg~a~~~  130 (131)
                      |.+|+..+.+  +..+....++.++|.++...|++++|+..+++++..+|++..+++..|.++..
T Consensus        17 ~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~   81 (136)
T 2fo7_A           17 YDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK   81 (136)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHH
Confidence            8899998888  56677888999999999999999999999999999999999999999988753

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=98.38  E-value=6.3e-07  Score=67.79  Aligned_cols=63  Identities=13%  Similarity=-0.002  Sum_probs=59.6

Q ss_pred             HHHHHHHHHH--HhhhhhHHHHHHHHHHHHHh--------CChHHHHHHHHHHHhhCC---CCHHHHHHHHHhhhc
Q psy18096         68 GILASQELLD--SLIKERINCYNNLAQAQIKL--------GSLEPALMSLENVLNLDP---NNIKALQRKAKCLIL  130 (131)
Q Consensus        68 y~~Ai~~~~~--~~~~~~~~~~~N~a~~~~kl--------~~~~~a~~~~~~al~~dp---~~~ka~~rrg~a~~~  130 (131)
                      |.+|+..|++  ++.|....++.|+|.+|..+        |+|++|+..++++++++|   ++..+|+.+|.++..
T Consensus       195 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~  270 (474)
T 4abn_A          195 VMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKY  270 (474)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHH
Confidence            8899999998  88899999999999999999        999999999999999999   999999999998864

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=98.38  E-value=9.3e-07  Score=67.11  Aligned_cols=60  Identities=25%  Similarity=0.334  Sum_probs=57.4

Q ss_pred             HHHHHHHHHH--HhhhhhHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHh
Q psy18096         68 GILASQELLD--SLIKERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKC  127 (131)
Q Consensus        68 y~~Ai~~~~~--~~~~~~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~~~ka~~rrg~a  127 (131)
                      |.+|+..+++  +++|....++.|+|.+|.++|+|++|+..++++++++|++..+++..+.+
T Consensus        56 ~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~  117 (477)
T 1wao_1           56 YGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQEC  117 (477)
T ss_dssp             HHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCTTHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            9999999999  88899999999999999999999999999999999999999999988877

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=98.37  E-value=2.8e-06  Score=52.04  Aligned_cols=58  Identities=21%  Similarity=0.092  Sum_probs=51.4

Q ss_pred             HHHHHHHHHH--Hhhhhh---HHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHH
Q psy18096         68 GILASQELLD--SLIKER---INCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKA  125 (131)
Q Consensus        68 y~~Ai~~~~~--~~~~~~---~~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~~~ka~~rrg  125 (131)
                      |.+|+..|++  ...|..   ..++.++|.++.++|++++|+..+++++..+|++..+..-+.
T Consensus        55 ~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~  117 (129)
T 2xev_A           55 FQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQYPGSDAARVAQE  117 (129)
T ss_dssp             HHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHHH
Confidence            9999999998  666766   889999999999999999999999999999999987765443

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=98.37  E-value=3.7e-06  Score=58.84  Aligned_cols=62  Identities=19%  Similarity=0.140  Sum_probs=58.4

Q ss_pred             HHHHHHHHHH--HhhhhhHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHhhh
Q psy18096         68 GILASQELLD--SLIKERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCLI  129 (131)
Q Consensus        68 y~~Ai~~~~~--~~~~~~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~~~ka~~rrg~a~~  129 (131)
                      |.+|+.++++  +..|....++.++|.++..+|++++|+..++++++++|++..+++..|.++.
T Consensus        37 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~  100 (327)
T 3cv0_A           37 LAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHT  100 (327)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHH
Confidence            9999999998  6778899999999999999999999999999999999999999999998875

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=98.35  E-value=4.3e-06  Score=50.72  Aligned_cols=60  Identities=10%  Similarity=0.050  Sum_probs=52.2

Q ss_pred             HHHHHHHHHH--Hhhhhh-------HHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHhh
Q psy18096         68 GILASQELLD--SLIKER-------INCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCL  128 (131)
Q Consensus        68 y~~Ai~~~~~--~~~~~~-------~~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~~~ka~~rrg~a~  128 (131)
                      |.+|+.++.+  .+.|..       ..++.++|.++.++|++++|+..+.++++++| +...+...+.+.
T Consensus        54 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~  122 (131)
T 1elr_A           54 YNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAE  122 (131)
T ss_dssp             HHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHH
Confidence            8899998888  555555       88999999999999999999999999999999 688887777664

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=98.35  E-value=1.8e-06  Score=62.54  Aligned_cols=62  Identities=21%  Similarity=0.146  Sum_probs=41.5

Q ss_pred             HHHHHHHHHH--HhhhhhHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHhhh
Q psy18096         68 GILASQELLD--SLIKERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCLI  129 (131)
Q Consensus        68 y~~Ai~~~~~--~~~~~~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~~~ka~~rrg~a~~  129 (131)
                      |.+|+..|.+  +..|....++.|++.++.++|++++|+..++++++++|++..+|+..|.++.
T Consensus       151 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~  214 (388)
T 1w3b_A          151 LEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLK  214 (388)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Confidence            6666666666  5556666667777777777777777777777777777776666666666553

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=98.35  E-value=1.9e-06  Score=66.12  Aligned_cols=63  Identities=16%  Similarity=-0.027  Sum_probs=59.5

Q ss_pred             HHHHHHHHHH--HhhhhhHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHhhhc
Q psy18096         68 GILASQELLD--SLIKERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCLIL  130 (131)
Q Consensus        68 y~~Ai~~~~~--~~~~~~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~~~ka~~rrg~a~~~  130 (131)
                      |.+|+..|++  ++.|....++.|+|.+|.++|++++|+..++++++++|++..+++..|.++..
T Consensus        73 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~  137 (568)
T 2vsy_A           73 HAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRR  137 (568)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            8999999998  78899999999999999999999999999999999999999999999998753

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=98.33  E-value=2.7e-06  Score=57.27  Aligned_cols=62  Identities=21%  Similarity=0.156  Sum_probs=43.3

Q ss_pred             HHHHHHHHHH--HhhhhhHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHhhh
Q psy18096         68 GILASQELLD--SLIKERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCLI  129 (131)
Q Consensus        68 y~~Ai~~~~~--~~~~~~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~~~ka~~rrg~a~~  129 (131)
                      |.+|+..+.+  +..|....++.++|.++.++|++++|+..++++++++|++..+++..|.++.
T Consensus       107 ~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~  170 (243)
T 2q7f_A          107 YKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLA  170 (243)
T ss_dssp             HHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence            7777777777  5555566667777777777777777777777777777777777776666654

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=98.32  E-value=2.9e-06  Score=59.89  Aligned_cols=62  Identities=18%  Similarity=0.062  Sum_probs=57.4

Q ss_pred             HHHHHHHHHH--HhhhhhHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHhhh
Q psy18096         68 GILASQELLD--SLIKERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCLI  129 (131)
Q Consensus        68 y~~Ai~~~~~--~~~~~~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~~~ka~~rrg~a~~  129 (131)
                      |.+|+..+++  +..|....++.++|.++.++|++++|+..++++++++|++..+++..|.++.
T Consensus       136 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~  199 (359)
T 3ieg_A          136 YTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYY  199 (359)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            8999999988  7778889999999999999999999999999999999999999999998875

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=98.30  E-value=3.7e-06  Score=58.79  Aligned_cols=63  Identities=16%  Similarity=0.161  Sum_probs=55.0

Q ss_pred             HHHHHHHHHH--HhhhhhHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHhhhc
Q psy18096         68 GILASQELLD--SLIKERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCLIL  130 (131)
Q Consensus        68 y~~Ai~~~~~--~~~~~~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~~~ka~~rrg~a~~~  130 (131)
                      |.+|+.++.+  +..|....++.++|.++..+|++++|+..++++++++|++..+++..|.++..
T Consensus       188 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~  252 (327)
T 3cv0_A          188 YDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSN  252 (327)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence            8888888887  66778888899999999999999999999999999999999999988887753

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=98.29  E-value=3.8e-06  Score=54.87  Aligned_cols=60  Identities=18%  Similarity=0.083  Sum_probs=52.6

Q ss_pred             HHHHHHHH--HhhhhhHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCC--HHHHHHHHHhhh
Q psy18096         70 LASQELLD--SLIKERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNN--IKALQRKAKCLI  129 (131)
Q Consensus        70 ~Ai~~~~~--~~~~~~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~~--~ka~~rrg~a~~  129 (131)
                      .|+..+++  ++.|....++.++|.++..+|++++|+..+.++++++|++  ..+++..|.++.
T Consensus        92 ~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~  155 (176)
T 2r5s_A           92 PELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILS  155 (176)
T ss_dssp             HHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHH
Confidence            35677766  6789999999999999999999999999999999999976  668988888764

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=98.28  E-value=4.4e-06  Score=55.33  Aligned_cols=42  Identities=21%  Similarity=0.137  Sum_probs=17.0

Q ss_pred             HHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHH
Q psy18096         85 NCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAK  126 (131)
Q Consensus        85 ~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~~~ka~~rrg~  126 (131)
                      .++.++|.++.++|++++|+..+.++++.+|++..+++..|.
T Consensus       114 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~  155 (225)
T 2vq2_A          114 IANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELAR  155 (225)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHH
Confidence            333444444444444444444444444444444444443333

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=98.27  E-value=2.9e-06  Score=64.58  Aligned_cols=63  Identities=21%  Similarity=0.108  Sum_probs=58.1

Q ss_pred             HHHHHHHHHH--HhhhhhHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHhhhc
Q psy18096         68 GILASQELLD--SLIKERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCLIL  130 (131)
Q Consensus        68 y~~Ai~~~~~--~~~~~~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~~~ka~~rrg~a~~~  130 (131)
                      |.+|++.+++  ++.|....+|.+++.+|.++|+|++|+..++++++++|++..++...+.+|..
T Consensus       532 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~  596 (597)
T 2xpi_A          532 YDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRALEE  596 (597)
T ss_dssp             HHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTC-
T ss_pred             HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHhc
Confidence            8899999988  67788999999999999999999999999999999999999999999998864

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=98.26  E-value=2.6e-06  Score=58.77  Aligned_cols=62  Identities=16%  Similarity=0.054  Sum_probs=50.3

Q ss_pred             HHHHHHHHHH--HhhhhhHHH-----------------HHHHHHHHHHhCChHHHHHHHHHHHhhCCC---CHHHHHHHH
Q psy18096         68 GILASQELLD--SLIKERINC-----------------YNNLAQAQIKLGSLEPALMSLENVLNLDPN---NIKALQRKA  125 (131)
Q Consensus        68 y~~Ai~~~~~--~~~~~~~~~-----------------~~N~a~~~~kl~~~~~a~~~~~~al~~dp~---~~ka~~rrg  125 (131)
                      |.+|+..|++  +..|....+                 +.++|.+|.++|+|++|+..++++++.+|+   ...++++.|
T Consensus       113 ~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~  192 (261)
T 3qky_A          113 TRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAM  192 (261)
T ss_dssp             HHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHH
Confidence            6777777777  333333222                 389999999999999999999999999998   578999999


Q ss_pred             Hhhh
Q psy18096        126 KCLI  129 (131)
Q Consensus       126 ~a~~  129 (131)
                      .++.
T Consensus       193 ~~~~  196 (261)
T 3qky_A          193 RAYI  196 (261)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            9885

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=98.26  E-value=4e-06  Score=50.80  Aligned_cols=50  Identities=14%  Similarity=-0.041  Sum_probs=46.9

Q ss_pred             HHHHHHHHHH--HhhhhhHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCC
Q psy18096         68 GILASQELLD--SLIKERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNN  117 (131)
Q Consensus        68 y~~Ai~~~~~--~~~~~~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~~  117 (131)
                      |.+|+..|.+  ++.|....++.++|.+|.++|++++|+..+.++++++|++
T Consensus        35 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~   86 (115)
T 2kat_A           35 FDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAAAQSR   86 (115)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccc
Confidence            9999999999  7789999999999999999999999999999999998854

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=98.25  E-value=5.8e-06  Score=56.15  Aligned_cols=61  Identities=16%  Similarity=0.097  Sum_probs=34.3

Q ss_pred             HHHHHHHHHH--HhhhhhHHHHHHHHHHHHHhCChHHHHHHHHHHHh--hCCCCHHHHHHHHHhh
Q psy18096         68 GILASQELLD--SLIKERINCYNNLAQAQIKLGSLEPALMSLENVLN--LDPNNIKALQRKAKCL  128 (131)
Q Consensus        68 y~~Ai~~~~~--~~~~~~~~~~~N~a~~~~kl~~~~~a~~~~~~al~--~dp~~~ka~~rrg~a~  128 (131)
                      |.+|+..+.+  ++.|....++.++|.++..+|++++|+..+++++.  .+|.+..+++..|.++
T Consensus        87 ~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~  151 (252)
T 2ho1_A           87 PKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVS  151 (252)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHH
Confidence            6666666665  44444555555555555555555555555555555  5555555555555544

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=98.25  E-value=2.3e-06  Score=60.33  Aligned_cols=63  Identities=11%  Similarity=0.029  Sum_probs=52.3

Q ss_pred             HHHHHHHHHH---------HhhhhhHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCC------HHHHHHHHHhhhc
Q psy18096         68 GILASQELLD---------SLIKERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNN------IKALQRKAKCLIL  130 (131)
Q Consensus        68 y~~Ai~~~~~---------~~~~~~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~~------~ka~~rrg~a~~~  130 (131)
                      |.+|+.+|.+         ...+....+++|+|.+|.++|+|++|+..++++|++.++.      ..+|+..|.++..
T Consensus       171 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~  248 (293)
T 3u3w_A          171 LKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRK  248 (293)
T ss_dssp             HHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHH
Confidence            6777777766         2245667799999999999999999999999999987554      8899999998863

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=98.24  E-value=4.3e-06  Score=57.33  Aligned_cols=63  Identities=11%  Similarity=0.123  Sum_probs=54.1

Q ss_pred             HHHHHHHHHHHh-h----hhhHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHhhhc
Q psy18096         68 GILASQELLDSL-I----KERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCLIL  130 (131)
Q Consensus        68 y~~Ai~~~~~~~-~----~~~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~~~ka~~rrg~a~~~  130 (131)
                      |.+|+..+++-+ .    .....++.++|.++..+|++++|+..++++++++|++..+|+..|.++..
T Consensus        53 ~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~  120 (272)
T 3u4t_A           53 YDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYN  120 (272)
T ss_dssp             HHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHH
Confidence            899999988821 1    22356799999999999999999999999999999999999999998764

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=98.24  E-value=3.2e-06  Score=52.28  Aligned_cols=51  Identities=8%  Similarity=0.022  Sum_probs=46.7

Q ss_pred             hhhhHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHhhhc
Q psy18096         80 IKERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCLIL  130 (131)
Q Consensus        80 ~~~~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~~~ka~~rrg~a~~~  130 (131)
                      .+..+..+.++|.++.+.|+|++|+..+.+++.++|++..+|+.+|.++..
T Consensus         5 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~   55 (137)
T 3q49_B            5 KSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLK   55 (137)
T ss_dssp             -CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             ccccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHH
Confidence            456778999999999999999999999999999999999999999998863

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=98.23  E-value=3e-06  Score=57.57  Aligned_cols=63  Identities=16%  Similarity=-0.003  Sum_probs=58.3

Q ss_pred             HHHHHHHHHH--HhhhhhHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHhhhc
Q psy18096         68 GILASQELLD--SLIKERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCLIL  130 (131)
Q Consensus        68 y~~Ai~~~~~--~~~~~~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~~~ka~~rrg~a~~~  130 (131)
                      |.+|+..|.+  +..|....++.++|.++.++|++++|+..+.++++++|++..+++..|.++..
T Consensus        53 ~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~  117 (252)
T 2ho1_A           53 TEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYE  117 (252)
T ss_dssp             TGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHH
Confidence            8889998888  66788899999999999999999999999999999999999999999988753

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=98.23  E-value=6.2e-06  Score=52.08  Aligned_cols=57  Identities=23%  Similarity=0.146  Sum_probs=47.8

Q ss_pred             HHHHHHHHHH--Hhh-h-hhHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHH
Q psy18096         68 GILASQELLD--SLI-K-ERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRK  124 (131)
Q Consensus        68 y~~Ai~~~~~--~~~-~-~~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~~~ka~~rr  124 (131)
                      =+++|.++..  ... | ....+++.+|..+.|+|+|.+|++.|+..|+.+|+|..|.--+
T Consensus        54 ~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~eP~n~QA~~Lk  114 (126)
T 1nzn_A           54 IRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELE  114 (126)
T ss_dssp             HHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence            4678888887  222 4 6778999999999999999999999999999999998876433

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=98.23  E-value=3.6e-06  Score=65.33  Aligned_cols=62  Identities=10%  Similarity=-0.016  Sum_probs=51.2

Q ss_pred             HHHHHHHHHH--HhhhhhHHHHHHHHHHHHHhC--ChHHHHHHHHHHHhhCCCCHHHHHHHHHhhh
Q psy18096         68 GILASQELLD--SLIKERINCYNNLAQAQIKLG--SLEPALMSLENVLNLDPNNIKALQRKAKCLI  129 (131)
Q Consensus        68 y~~Ai~~~~~--~~~~~~~~~~~N~a~~~~kl~--~~~~a~~~~~~al~~dp~~~ka~~rrg~a~~  129 (131)
                      |++|+..++.  +.+|.+..+|++|+.+..+++  +|++++..|+++|++||.|..||..|+.++.
T Consensus        89 ~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~  154 (567)
T 1dce_A           89 VKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAA  154 (567)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHH
Confidence            6677777777  777888888888888888888  6788888888888888888888888887654

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=98.23  E-value=5.7e-06  Score=58.43  Aligned_cols=63  Identities=13%  Similarity=0.043  Sum_probs=49.8

Q ss_pred             HHHHHHHHHH--Hhhhh------hHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHH-------HHHHHHHhhhc
Q psy18096         68 GILASQELLD--SLIKE------RINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIK-------ALQRKAKCLIL  130 (131)
Q Consensus        68 y~~Ai~~~~~--~~~~~------~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~~~k-------a~~rrg~a~~~  130 (131)
                      |.+|+.+|++  ++.+.      ...++.|+|.++.++|+|++|+..+++++.++|++..       +|++.|.++..
T Consensus       134 ~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~  211 (292)
T 1qqe_A          134 YAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLA  211 (292)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHH
Confidence            5667777766  33332      2678999999999999999999999999999987643       67888887753

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=98.20  E-value=6.1e-06  Score=57.75  Aligned_cols=62  Identities=10%  Similarity=-0.041  Sum_probs=42.0

Q ss_pred             HHHHHHHHHH--HhhhhhHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHhhh
Q psy18096         68 GILASQELLD--SLIKERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCLI  129 (131)
Q Consensus        68 y~~Ai~~~~~--~~~~~~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~~~ka~~rrg~a~~  129 (131)
                      |.+|+..+.+  ++.|.....+.++|.++..+|++++|+..++++++.+|++..+++..|.++.
T Consensus       141 ~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~  204 (330)
T 3hym_B          141 HDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAF  204 (330)
T ss_dssp             HHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence            6666666666  4555556666667777777777777777777777777777777777666654

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=98.20  E-value=5.2e-06  Score=54.20  Aligned_cols=54  Identities=11%  Similarity=-0.062  Sum_probs=45.8

Q ss_pred             HHHHHHHHHH--HhhhhhHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHH
Q psy18096         68 GILASQELLD--SLIKERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQ  122 (131)
Q Consensus        68 y~~Ai~~~~~--~~~~~~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~~~ka~~  122 (131)
                      |.+|+..|++  +.+|.+..++.++|.++..+|++++|+..+++++..+| +...+.
T Consensus        22 ~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~   77 (176)
T 2r5s_A           22 HAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSYKS   77 (176)
T ss_dssp             HHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHHHH
Confidence            8999999988  88899999999999999999999999888888877777 655443

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=98.20  E-value=6.7e-06  Score=60.32  Aligned_cols=58  Identities=12%  Similarity=0.122  Sum_probs=27.0

Q ss_pred             HHHHHHHHHH--HhhhhhHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHH
Q psy18096         68 GILASQELLD--SLIKERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKA  125 (131)
Q Consensus        68 y~~Ai~~~~~--~~~~~~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~~~ka~~rrg  125 (131)
                      |.+|+..+++  ++.|....++.++|.++.++|++++|+..++++++++|++..++...+
T Consensus       311 ~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~  370 (450)
T 2y4t_A          311 PVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLE  370 (450)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHH
Confidence            4444444444  333444444444444444444444444444444444444444444444

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=98.18  E-value=4.4e-06  Score=61.85  Aligned_cols=62  Identities=13%  Similarity=0.045  Sum_probs=56.2

Q ss_pred             HHHHHHHHHH--HhhhhhHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHhhh
Q psy18096         68 GILASQELLD--SLIKERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCLI  129 (131)
Q Consensus        68 y~~Ai~~~~~--~~~~~~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~~~ka~~rrg~a~~  129 (131)
                      |.+|++++++  ++.|....++.|+|.+|.++|++++|+..+.++++.+|++..+++..|.++.
T Consensus       229 ~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~  292 (472)
T 4g1t_A          229 EGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYR  292 (472)
T ss_dssp             -CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHHHHHHH
Confidence            6778888877  7788999999999999999999999999999999999999999999998763

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=98.18  E-value=5e-06  Score=48.88  Aligned_cols=44  Identities=23%  Similarity=0.225  Sum_probs=40.8

Q ss_pred             HHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHH-HHHHHHHhhhc
Q psy18096         87 YNNLAQAQIKLGSLEPALMSLENVLNLDPNNIK-ALQRKAKCLIL  130 (131)
Q Consensus        87 ~~N~a~~~~kl~~~~~a~~~~~~al~~dp~~~k-a~~rrg~a~~~  130 (131)
                      ..++|.++.+.|+|++|+..++++++.+|++.. +|+.+|.++..
T Consensus         3 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~   47 (99)
T 2kc7_A            3 QLKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRK   47 (99)
T ss_dssp             THHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHH
Confidence            367999999999999999999999999999999 99999998863

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=98.18  E-value=9.4e-07  Score=52.36  Aligned_cols=51  Identities=22%  Similarity=0.246  Sum_probs=46.3

Q ss_pred             hhhhHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHhhhc
Q psy18096         80 IKERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCLIL  130 (131)
Q Consensus        80 ~~~~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~~~ka~~rrg~a~~~  130 (131)
                      +|....++.++|.++..+|+|++|+..++++++++|++..+++.+|.++..
T Consensus         2 ~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~   52 (112)
T 2kck_A            2 VDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYN   52 (112)
T ss_dssp             CCSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
T ss_pred             CCCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHH
Confidence            355667889999999999999999999999999999999999999998763

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=98.14  E-value=6.3e-06  Score=64.01  Aligned_cols=62  Identities=13%  Similarity=0.096  Sum_probs=57.2

Q ss_pred             HHHHHHHHHH--HhhhhhHHHHHHHHHHHHHhCC----------hHHHHHHHHHHHhhCCCCHHHHHHHHHhhh
Q psy18096         68 GILASQELLD--SLIKERINCYNNLAQAQIKLGS----------LEPALMSLENVLNLDPNNIKALQRKAKCLI  129 (131)
Q Consensus        68 y~~Ai~~~~~--~~~~~~~~~~~N~a~~~~kl~~----------~~~a~~~~~~al~~dp~~~ka~~rrg~a~~  129 (131)
                      .++|+..+++  ++.|....+|++|+.+..++++          +++++..++++|+.+|+|..+|+.|+.++.
T Consensus        45 ~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~  118 (567)
T 1dce_A           45 DESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLS  118 (567)
T ss_dssp             SHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            4677887777  8889999999999999999998          999999999999999999999999998874

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=98.13  E-value=1e-05  Score=57.18  Aligned_cols=52  Identities=21%  Similarity=0.050  Sum_probs=46.5

Q ss_pred             HhhhhhHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCC--HHHHHHHHHhhh
Q psy18096         78 SLIKERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNN--IKALQRKAKCLI  129 (131)
Q Consensus        78 ~~~~~~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~~--~ka~~rrg~a~~  129 (131)
                      ...|....++.|+|.++..+|++++|+..+.+++..+|++  ..++.+.|.++.
T Consensus       213 ~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~  266 (287)
T 3qou_A          213 AENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILA  266 (287)
T ss_dssp             HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHH
T ss_pred             hcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHH
Confidence            4468889999999999999999999999999999999998  888888888764

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=98.12  E-value=1.7e-05  Score=50.40  Aligned_cols=56  Identities=21%  Similarity=0.210  Sum_probs=48.1

Q ss_pred             HHHHHHHHHH--Hhhh-hhHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHH
Q psy18096         68 GILASQELLD--SLIK-ERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQR  123 (131)
Q Consensus        68 y~~Ai~~~~~--~~~~-~~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~~~ka~~r  123 (131)
                      ..++|.+++.  ...+ ....+++-+|.++.|+|+|.+|++.|+.+|+.+|+|..|.--
T Consensus        59 ~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~L  117 (134)
T 3o48_A           59 ERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGAL  117 (134)
T ss_dssp             HHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHHH
T ss_pred             HHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHHH
Confidence            6788988877  3334 568899999999999999999999999999999999877543

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=98.11  E-value=7.7e-06  Score=61.23  Aligned_cols=62  Identities=18%  Similarity=0.101  Sum_probs=34.2

Q ss_pred             HHHHHHHHHH--HhhhhhHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHhhh
Q psy18096         68 GILASQELLD--SLIKERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCLI  129 (131)
Q Consensus        68 y~~Ai~~~~~--~~~~~~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~~~ka~~rrg~a~~  129 (131)
                      |.+|+..+.+  +..|....++.++|.++..+|+|++|+..++++++++|++..+++..|.++.
T Consensus       292 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~  355 (537)
T 3fp2_A          292 SQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLY  355 (537)
T ss_dssp             CHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            3444444444  3445555555566666666666666666666666666665555555555543

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=98.08  E-value=1e-05  Score=58.32  Aligned_cols=61  Identities=10%  Similarity=-0.081  Sum_probs=57.9

Q ss_pred             HHHHHHHHHH--HhhhhhHHHHHHHHHHHHHhC--ChHHHHHHHHHHHhhCCCCHHHHHHHHHhh
Q psy18096         68 GILASQELLD--SLIKERINCYNNLAQAQIKLG--SLEPALMSLENVLNLDPNNIKALQRKAKCL  128 (131)
Q Consensus        68 y~~Ai~~~~~--~~~~~~~~~~~N~a~~~~kl~--~~~~a~~~~~~al~~dp~~~ka~~rrg~a~  128 (131)
                      ..+|+.+++.  +++|...+++++|+.+...++  .+++++..++++|..+|++..+|+.|+.++
T Consensus        49 s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL  113 (306)
T 3dra_A           49 SERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLII  113 (306)
T ss_dssp             SHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHH
Confidence            4688988888  889999999999999999999  999999999999999999999999999887

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=98.08  E-value=1.3e-05  Score=54.41  Aligned_cols=63  Identities=13%  Similarity=0.055  Sum_probs=49.6

Q ss_pred             HHHHHHHHHH--Hhhhhh-----------------HHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCH---HHHHHHH
Q psy18096         68 GILASQELLD--SLIKER-----------------INCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNI---KALQRKA  125 (131)
Q Consensus        68 y~~Ai~~~~~--~~~~~~-----------------~~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~~~---ka~~rrg  125 (131)
                      +.+|+..|++  +..|..                 .....++|.+|.+.|+|.+|+..++++++..|++.   ++++++|
T Consensus       112 ~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~  191 (225)
T 2yhc_A          112 ARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLME  191 (225)
T ss_dssp             HHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHH
Confidence            6777777777  222222                 23346889999999999999999999999999886   7899999


Q ss_pred             Hhhhc
Q psy18096        126 KCLIL  130 (131)
Q Consensus       126 ~a~~~  130 (131)
                      .++..
T Consensus       192 ~~~~~  196 (225)
T 2yhc_A          192 NAYRQ  196 (225)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            98864

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=98.03  E-value=1.3e-05  Score=54.63  Aligned_cols=62  Identities=23%  Similarity=0.186  Sum_probs=53.9

Q ss_pred             HHHHHHHHHH--Hh--------hhhhHHHHHHHHHHHHHhCChHHHHHHHHHHHhh--------CCCCHHHHHHHHHhhh
Q psy18096         68 GILASQELLD--SL--------IKERINCYNNLAQAQIKLGSLEPALMSLENVLNL--------DPNNIKALQRKAKCLI  129 (131)
Q Consensus        68 y~~Ai~~~~~--~~--------~~~~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~--------dp~~~ka~~rrg~a~~  129 (131)
                      |.+|+.++.+  ++        .+....++.|+|.++..+|++++|+..+.+++.+        +|....+++..|.++.
T Consensus       101 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~  180 (283)
T 3edt_B          101 YKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYL  180 (283)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Confidence            7777777766  22        4778899999999999999999999999999999        8888999999998875

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=98.02  E-value=1.9e-05  Score=50.80  Aligned_cols=56  Identities=21%  Similarity=0.210  Sum_probs=47.1

Q ss_pred             HHHHHHHHHH--Hhhh-hhHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHH
Q psy18096         68 GILASQELLD--SLIK-ERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQR  123 (131)
Q Consensus        68 y~~Ai~~~~~--~~~~-~~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~~~ka~~r  123 (131)
                      =+++|.+++.  ...| ....+++.+|.++.|+|+|.+|.+.|+..|+.+|+|..|.--
T Consensus        58 i~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~L  116 (144)
T 1y8m_A           58 ERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGAL  116 (144)
T ss_dssp             HHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHHH
T ss_pred             HHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHH
Confidence            4678888887  3233 577899999999999999999999999999999999777543

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=98.02  E-value=2.1e-05  Score=56.69  Aligned_cols=62  Identities=13%  Similarity=-0.009  Sum_probs=55.8

Q ss_pred             HHHHHHHHHH--HhhhhhHHHHHHHHHHHHHhCChH--HHHHHHHHHHhhCCCCHHHHHHHHHhhh
Q psy18096         68 GILASQELLD--SLIKERINCYNNLAQAQIKLGSLE--PALMSLENVLNLDPNNIKALQRKAKCLI  129 (131)
Q Consensus        68 y~~Ai~~~~~--~~~~~~~~~~~N~a~~~~kl~~~~--~a~~~~~~al~~dp~~~ka~~rrg~a~~  129 (131)
                      +.+++.++++  +.+|.+..++++|+.+..+++.|+  +++..|+++|+.||.|..||..|+.++.
T Consensus       126 ~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~  191 (306)
T 3dra_A          126 PYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLF  191 (306)
T ss_dssp             THHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            4566666666  778999999999999999999999  9999999999999999999999998764

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=98.01  E-value=2.7e-05  Score=56.76  Aligned_cols=61  Identities=10%  Similarity=-0.016  Sum_probs=44.8

Q ss_pred             HHHHHHHHHH--HhhhhhHHHHHHHHHHHHHhCC--hHHHHHHHHHHHhhCCCCHHHHHHHHHhh
Q psy18096         68 GILASQELLD--SLIKERINCYNNLAQAQIKLGS--LEPALMSLENVLNLDPNNIKALQRKAKCL  128 (131)
Q Consensus        68 y~~Ai~~~~~--~~~~~~~~~~~N~a~~~~kl~~--~~~a~~~~~~al~~dp~~~ka~~rrg~a~  128 (131)
                      |.+++.+++.  ..+|.+..+|++|+.+..+++.  |++++..|+++|+.||.|..||+.|+.++
T Consensus        90 l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl  154 (331)
T 3dss_A           90 VKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVA  154 (331)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            4566666666  5667777777777777777773  77777888888888888887877777664

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=98.00  E-value=2.4e-05  Score=56.75  Aligned_cols=63  Identities=11%  Similarity=-0.085  Sum_probs=51.4

Q ss_pred             HHHHHHHHHH--H------hhhhhHHHHHHHHHHHHHhCChHHHHHHHHHHHh-----hC-CCCHHHHHHHHHhhhc
Q psy18096         68 GILASQELLD--S------LIKERINCYNNLAQAQIKLGSLEPALMSLENVLN-----LD-PNNIKALQRKAKCLIL  130 (131)
Q Consensus        68 y~~Ai~~~~~--~------~~~~~~~~~~N~a~~~~kl~~~~~a~~~~~~al~-----~d-p~~~ka~~rrg~a~~~  130 (131)
                      |.+|+.++.+  +      -.+....++.|+|.+|..+|++++|+..+.++++     .+ |....+++..|.++..
T Consensus       200 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~  276 (383)
T 3ulq_A          200 YEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYK  276 (383)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHH
Confidence            6777777766  2      2345567899999999999999999999999999     57 8889999999988763

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=97.98  E-value=1.7e-05  Score=55.84  Aligned_cols=63  Identities=13%  Similarity=0.053  Sum_probs=49.6

Q ss_pred             HHHHHHHHHHHh--------h-hhhHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCC------CHHHHHHHHHhhhc
Q psy18096         68 GILASQELLDSL--------I-KERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPN------NIKALQRKAKCLIL  130 (131)
Q Consensus        68 y~~Ai~~~~~~~--------~-~~~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~------~~ka~~rrg~a~~~  130 (131)
                      |.+|+.+|++-+        . ...+.+++|+|.+|.++|+|++|+..+++++.+.++      -..+|++.|.++..
T Consensus       171 ~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~  248 (293)
T 2qfc_A          171 LKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRK  248 (293)
T ss_dssp             HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH
Confidence            777777777711        1 123379999999999999999999999999998643      27889999988753

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=97.97  E-value=3.2e-05  Score=54.81  Aligned_cols=61  Identities=15%  Similarity=0.028  Sum_probs=51.9

Q ss_pred             HHHHHHHHH--H-hhhhhHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHH-HHHHHHHhhh
Q psy18096         69 ILASQELLD--S-LIKERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIK-ALQRKAKCLI  129 (131)
Q Consensus        69 ~~Ai~~~~~--~-~~~~~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~~~k-a~~rrg~a~~  129 (131)
                      .+|+..|++  + +.|....+|.+++..+.++|++++|+..++++|+++|++.. +|+..|..+.
T Consensus        81 ~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~  145 (308)
T 2ond_A           81 DEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFAR  145 (308)
T ss_dssp             HHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHH
Confidence            678888887  5 57888889999999999999999999999999999998886 8888887653

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=97.97  E-value=3.8e-05  Score=56.76  Aligned_cols=62  Identities=11%  Similarity=0.033  Sum_probs=49.7

Q ss_pred             HHHHHHHHHH-----------HhhhhhHHHHHHHHHHHHHhCChHHHHHHHHHHHhhC--------CCCHHHHHHHHHhh
Q psy18096         68 GILASQELLD-----------SLIKERINCYNNLAQAQIKLGSLEPALMSLENVLNLD--------PNNIKALQRKAKCL  128 (131)
Q Consensus        68 y~~Ai~~~~~-----------~~~~~~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~d--------p~~~ka~~rrg~a~  128 (131)
                      |++|++.|++           +.++.....|.|+|.+|..+|+|++|+.++++++++.        +....++..+|.++
T Consensus        67 ~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~  146 (472)
T 4g1t_A           67 NEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTR  146 (472)
T ss_dssp             HHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHHHHHH
Confidence            7777777776           2256678899999999999999999999999999873        35567777777665


Q ss_pred             h
Q psy18096        129 I  129 (131)
Q Consensus       129 ~  129 (131)
                      +
T Consensus       147 ~  147 (472)
T 4g1t_A          147 L  147 (472)
T ss_dssp             H
T ss_pred             H
Confidence            3

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=97.97  E-value=3.6e-05  Score=56.49  Aligned_cols=62  Identities=11%  Similarity=-0.012  Sum_probs=49.5

Q ss_pred             HHHHHHHHHH--HhhhhhHHHHHHHHHHHHHhC-ChHHHHHHHHHHHhhCCCCHHHHHHHHHhhh
Q psy18096         68 GILASQELLD--SLIKERINCYNNLAQAQIKLG-SLEPALMSLENVLNLDPNNIKALQRKAKCLI  129 (131)
Q Consensus        68 y~~Ai~~~~~--~~~~~~~~~~~N~a~~~~kl~-~~~~a~~~~~~al~~dp~~~ka~~rrg~a~~  129 (131)
                      ..+|+.+++.  .++|.+..++++|+.+...++ .+++++..++++|..+|+|..+|+.|+.++.
T Consensus        70 se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~  134 (349)
T 3q7a_A           70 SERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLD  134 (349)
T ss_dssp             SHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence            4677777777  777888888888888888888 4888888888888888888888888887664

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=97.95  E-value=2.5e-05  Score=55.10  Aligned_cols=63  Identities=14%  Similarity=0.038  Sum_probs=49.6

Q ss_pred             HHHHHHHHHH--Hhhh------hhHHHHHHHHHHHHHh-CChHHHHHHHHHHHhhCCCC------HHHHHHHHHhhhc
Q psy18096         68 GILASQELLD--SLIK------ERINCYNNLAQAQIKL-GSLEPALMSLENVLNLDPNN------IKALQRKAKCLIL  130 (131)
Q Consensus        68 y~~Ai~~~~~--~~~~------~~~~~~~N~a~~~~kl-~~~~~a~~~~~~al~~dp~~------~ka~~rrg~a~~~  130 (131)
                      |.+|+.+|++  ++.+      ....++.|+|.+|..+ |++++|+..+++||++.|++      ..++.+.|.++..
T Consensus        93 ~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~  170 (292)
T 1qqe_A           93 SVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKAL  170 (292)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHH
Confidence            6677777766  2222      2367899999999995 99999999999999998865      5678888887753

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=97.95  E-value=2.6e-05  Score=56.58  Aligned_cols=63  Identities=14%  Similarity=-0.100  Sum_probs=51.5

Q ss_pred             HHHHHHHHHH--H------hhhhhHHHHHHHHHHHHHhCChHHHHHHHHHHHh-----hCCCCHHHHHHHHHhhhc
Q psy18096         68 GILASQELLD--S------LIKERINCYNNLAQAQIKLGSLEPALMSLENVLN-----LDPNNIKALQRKAKCLIL  130 (131)
Q Consensus        68 y~~Ai~~~~~--~------~~~~~~~~~~N~a~~~~kl~~~~~a~~~~~~al~-----~dp~~~ka~~rrg~a~~~  130 (131)
                      |.+|+.++.+  +      -.+....++.|+|.+|..+|++++|+..+.+++.     .+|....+++..|.++..
T Consensus       198 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~  273 (378)
T 3q15_A          198 YDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCK  273 (378)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHH
Confidence            6777777766  1      2235667899999999999999999999999999     788889999999988753

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=97.95  E-value=2.6e-05  Score=53.09  Aligned_cols=63  Identities=24%  Similarity=0.098  Sum_probs=54.9

Q ss_pred             HHHHHHHHHH--Hh--------hhhhHHHHHHHHHHHHHhCChHHHHHHHHHHHhh--------CCCCHHHHHHHHHhhh
Q psy18096         68 GILASQELLD--SL--------IKERINCYNNLAQAQIKLGSLEPALMSLENVLNL--------DPNNIKALQRKAKCLI  129 (131)
Q Consensus        68 y~~Ai~~~~~--~~--------~~~~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~--------dp~~~ka~~rrg~a~~  129 (131)
                      |.+|+.++.+  ++        .+....++.|+|.++..+|++++|+..+.+++.+        +|....+++..|.++.
T Consensus        59 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~  138 (283)
T 3edt_B           59 YKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQ  138 (283)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHH
Confidence            7888888877  22        3778889999999999999999999999999998        6888999999998876


Q ss_pred             c
Q psy18096        130 L  130 (131)
Q Consensus       130 ~  130 (131)
                      .
T Consensus       139 ~  139 (283)
T 3edt_B          139 N  139 (283)
T ss_dssp             T
T ss_pred             H
Confidence            4

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=97.95  E-value=4.5e-05  Score=55.61  Aligned_cols=62  Identities=6%  Similarity=0.014  Sum_probs=58.0

Q ss_pred             HHHHHHHHHH--HhhhhhHHHHHHHHHHHHHhCC-hHHHHHHHHHHHhhCCCCHHHHHHHHHhhh
Q psy18096         68 GILASQELLD--SLIKERINCYNNLAQAQIKLGS-LEPALMSLENVLNLDPNNIKALQRKAKCLI  129 (131)
Q Consensus        68 y~~Ai~~~~~--~~~~~~~~~~~N~a~~~~kl~~-~~~a~~~~~~al~~dp~~~ka~~rrg~a~~  129 (131)
                      |.+++.++++  +.+|.+..+|++|+.+..+++. +++++..++++|+.||.|.-||..|+.++.
T Consensus       126 ~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~  190 (331)
T 3dss_A          126 WARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLP  190 (331)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence            7889998888  8899999999999999999999 699999999999999999999999998764

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=97.92  E-value=3e-05  Score=55.01  Aligned_cols=62  Identities=8%  Similarity=0.038  Sum_probs=41.5

Q ss_pred             HHHHHHHHHH--Hhh------hhhHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCC------HHHHHHHHHhhh
Q psy18096         68 GILASQELLD--SLI------KERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNN------IKALQRKAKCLI  129 (131)
Q Consensus        68 y~~Ai~~~~~--~~~------~~~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~~------~ka~~rrg~a~~  129 (131)
                      |.+|+.+|++  ++.      .....++.|+|.+|.++|+|++|+..+++++.+.|++      ..+++..|.+++
T Consensus       131 ~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~  206 (307)
T 2ifu_A          131 LSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQL  206 (307)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHH
Confidence            5555555555  222      2235678888888888888888888888888876544      346666666654

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=97.87  E-value=3.1e-05  Score=54.54  Aligned_cols=49  Identities=8%  Similarity=0.036  Sum_probs=45.5

Q ss_pred             hhHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHhhhc
Q psy18096         82 ERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCLIL  130 (131)
Q Consensus        82 ~~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~~~ka~~rrg~a~~~  130 (131)
                      ..+..+.++|.++.+.|+|++|+..+++++.++|++..+|+.+|.++..
T Consensus         2 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~   50 (281)
T 2c2l_A            2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLK   50 (281)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHH
Confidence            4567899999999999999999999999999999999999999999864

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=97.87  E-value=2.5e-05  Score=57.91  Aligned_cols=63  Identities=17%  Similarity=-0.025  Sum_probs=52.5

Q ss_pred             HHHHHHHHHH--HhhhhhH------HHHHHHHHHHHH---hCChHHHHHHHHHHHhhCCCCHHHHHHHHHhhhc
Q psy18096         68 GILASQELLD--SLIKERI------NCYNNLAQAQIK---LGSLEPALMSLENVLNLDPNNIKALQRKAKCLIL  130 (131)
Q Consensus        68 y~~Ai~~~~~--~~~~~~~------~~~~N~a~~~~k---l~~~~~a~~~~~~al~~dp~~~ka~~rrg~a~~~  130 (131)
                      |.+|+.++.+  ++.|...      .++.++|.++.+   +|++++|+..+++++.++|++..+++..|.++..
T Consensus       388 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~  461 (514)
T 2gw1_A          388 FDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQ  461 (514)
T ss_dssp             HHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence            7777777777  4455553      389999999999   9999999999999999999999999999988753

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=97.87  E-value=4.9e-05  Score=55.83  Aligned_cols=62  Identities=6%  Similarity=-0.093  Sum_probs=57.2

Q ss_pred             HHHHHHHHHH--HhhhhhHHHHHHHHHHHHHh-C-ChHHHHHHHHHHHhhCCCCHHHHHHHHHhhh
Q psy18096         68 GILASQELLD--SLIKERINCYNNLAQAQIKL-G-SLEPALMSLENVLNLDPNNIKALQRKAKCLI  129 (131)
Q Consensus        68 y~~Ai~~~~~--~~~~~~~~~~~N~a~~~~kl-~-~~~~a~~~~~~al~~dp~~~ka~~rrg~a~~  129 (131)
                      +++++.+++.  ...|.+..+|++|..+..++ + ++++++..|+++|+.||+|..||+.|+.++.
T Consensus       105 l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~  170 (349)
T 3q7a_A          105 LEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYS  170 (349)
T ss_dssp             HHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            7888888887  77899999999999999999 8 9999999999999999999999999998763

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=97.87  E-value=5.1e-05  Score=57.65  Aligned_cols=61  Identities=8%  Similarity=-0.096  Sum_probs=29.8

Q ss_pred             HHHHHHHHHH--HhhhhhHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHhh
Q psy18096         68 GILASQELLD--SLIKERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCL  128 (131)
Q Consensus        68 y~~Ai~~~~~--~~~~~~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~~~ka~~rrg~a~  128 (131)
                      |.+|+++|++  ++.|....++++++.+|.+.|++++|+..++++++.+|++..+|+..|.++
T Consensus       389 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~  451 (597)
T 2xpi_A          389 ISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQH  451 (597)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHH
Confidence            5555555554  334444444445555555555555555555555554444444444444443

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=97.85  E-value=3.1e-05  Score=54.62  Aligned_cols=45  Identities=24%  Similarity=0.031  Sum_probs=38.3

Q ss_pred             HHHHHHHHHH--HhhhhhHHHHHHHHHHHHHhCChHHHHHHHHHHHh
Q psy18096         68 GILASQELLD--SLIKERINCYNNLAQAQIKLGSLEPALMSLENVLN  112 (131)
Q Consensus        68 y~~Ai~~~~~--~~~~~~~~~~~N~a~~~~kl~~~~~a~~~~~~al~  112 (131)
                      +.+|+..|.+  +++|.+..++.++|.+++.+|++++|+..+++++.
T Consensus       133 ~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~  179 (287)
T 3qou_A          133 YTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPL  179 (287)
T ss_dssp             HHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCG
T ss_pred             HHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCch
Confidence            8999999998  78899999999999999999999988766655533

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=97.79  E-value=8.1e-05  Score=46.27  Aligned_cols=30  Identities=37%  Similarity=0.406  Sum_probs=16.4

Q ss_pred             HHHHHHHHHHHHhCChHHHHHHHHHHHhhC
Q psy18096         85 NCYNNLAQAQIKLGSLEPALMSLENVLNLD  114 (131)
Q Consensus        85 ~~~~N~a~~~~kl~~~~~a~~~~~~al~~d  114 (131)
                      .++.++|.++..+|++++|+..+++++.+.
T Consensus        50 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~   79 (164)
T 3ro3_A           50 IAYSNLGNAYIFLGEFETASEYYKKTLLLA   79 (164)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence            355555555555555555555555555543

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=97.78  E-value=0.00014  Score=50.19  Aligned_cols=59  Identities=10%  Similarity=-0.077  Sum_probs=28.8

Q ss_pred             HHHHHHHHHHHhhhhhHHHHHHHHHHHHH----hCChHHHHHHHHHHHhhCCCCHHHHHHHHHhh
Q psy18096         68 GILASQELLDSLIKERINCYNNLAQAQIK----LGSLEPALMSLENVLNLDPNNIKALQRKAKCL  128 (131)
Q Consensus        68 y~~Ai~~~~~~~~~~~~~~~~N~a~~~~k----l~~~~~a~~~~~~al~~dp~~~ka~~rrg~a~  128 (131)
                      |.+|+.+|.+-+.+....++.++|.+|..    .+++++|+..+.++++++  ++.+++..|.++
T Consensus        22 ~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~   84 (273)
T 1ouv_A           22 FTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNGCHLLGNLY   84 (273)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHH
Confidence            44555555443334444445555555555    555555555555555443  445555544444

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=97.75  E-value=8e-05  Score=51.53  Aligned_cols=62  Identities=23%  Similarity=0.199  Sum_probs=53.2

Q ss_pred             HHHHHHHHHH--Hh--------hhhhHHHHHHHHHHHHHhCChHHHHHHHHHHHhh--------CCCCHHHHHHHHHhhh
Q psy18096         68 GILASQELLD--SL--------IKERINCYNNLAQAQIKLGSLEPALMSLENVLNL--------DPNNIKALQRKAKCLI  129 (131)
Q Consensus        68 y~~Ai~~~~~--~~--------~~~~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~--------dp~~~ka~~rrg~a~~  129 (131)
                      |.+|+.++.+  ++        .+....++.++|.++..+|+|++|+..+++++.+        +|....+++..|.++.
T Consensus       127 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~  206 (311)
T 3nf1_A          127 YKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYL  206 (311)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence            7777777776  22        2677889999999999999999999999999998        7888889999988875

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=97.73  E-value=0.0001  Score=50.94  Aligned_cols=46  Identities=17%  Similarity=0.081  Sum_probs=40.4

Q ss_pred             HHHHHHHHHH--Hh--------hhhhHHHHHHHHHHHHHhCChHHHHHHHHHHHhh
Q psy18096         68 GILASQELLD--SL--------IKERINCYNNLAQAQIKLGSLEPALMSLENVLNL  113 (131)
Q Consensus        68 y~~Ai~~~~~--~~--------~~~~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~  113 (131)
                      |.+|+.++.+  ++        .+....++.++|.+|.++|++++|+..+++++++
T Consensus       169 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  224 (311)
T 3nf1_A          169 YEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTR  224 (311)
T ss_dssp             HHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            7888888877  33        6778889999999999999999999999999984

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=97.72  E-value=0.00017  Score=50.98  Aligned_cols=61  Identities=13%  Similarity=0.019  Sum_probs=52.5

Q ss_pred             HHHHHHHHH--HhhhhhHHHHHHHHHHHHH-------hCCh-------HHHHHHHHHHHh-hCCCCHHHHHHHHHhhh
Q psy18096         69 ILASQELLD--SLIKERINCYNNLAQAQIK-------LGSL-------EPALMSLENVLN-LDPNNIKALQRKAKCLI  129 (131)
Q Consensus        69 ~~Ai~~~~~--~~~~~~~~~~~N~a~~~~k-------l~~~-------~~a~~~~~~al~-~dp~~~ka~~rrg~a~~  129 (131)
                      ++|+..|++  ...|..+.+|.++|..+..       +|++       ++|+..+++|++ ++|++..+|+..|..+.
T Consensus        33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~  110 (308)
T 2ond_A           33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEE  110 (308)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence            566666666  6679999999999999874       5886       999999999999 79999999999998764

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=97.71  E-value=0.00019  Score=48.27  Aligned_cols=61  Identities=11%  Similarity=-0.141  Sum_probs=49.7

Q ss_pred             HHHHHHHHHH--Hhhh--hhHHHHHHHHHHHHH----hCChHHHHHHHHHHHhhCCCCHHHHHHHHHhhh
Q psy18096         68 GILASQELLD--SLIK--ERINCYNNLAQAQIK----LGSLEPALMSLENVLNLDPNNIKALQRKAKCLI  129 (131)
Q Consensus        68 y~~Ai~~~~~--~~~~--~~~~~~~N~a~~~~k----l~~~~~a~~~~~~al~~dp~~~ka~~rrg~a~~  129 (131)
                      +.+|+.+|.+  +..+  ..+.+++|++.+|..    .+++++|+..+.+++++ |.+..+++..|.+|.
T Consensus       105 ~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~a~~~Lg~~y~  173 (212)
T 3rjv_A          105 VAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SRTGYAEYWAGMMFQ  173 (212)
T ss_dssp             HHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCTTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCCHHHHHHHHHHHH
Confidence            7888888888  3333  348889999999998    88899999999999988 677888888888774

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=97.69  E-value=0.00014  Score=47.52  Aligned_cols=62  Identities=10%  Similarity=-0.032  Sum_probs=49.5

Q ss_pred             HHHHHHHHHH--------HhhhhhHHHHHHHHHHHHHhCChHHHHHHHHHHHhh---CC----CCHHHHHHHHHhhh
Q psy18096         68 GILASQELLD--------SLIKERINCYNNLAQAQIKLGSLEPALMSLENVLNL---DP----NNIKALQRKAKCLI  129 (131)
Q Consensus        68 y~~Ai~~~~~--------~~~~~~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~---dp----~~~ka~~rrg~a~~  129 (131)
                      |.+|+.++.+        ...+....++.|+|.++..+|++++|+..+.+++.+   .+    ....+++..|.++.
T Consensus        42 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~  118 (203)
T 3gw4_A           42 FDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVAL  118 (203)
T ss_dssp             HHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHH
Confidence            6777777766        245678889999999999999999999999999998   33    33566777777664

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=97.68  E-value=8.6e-05  Score=49.99  Aligned_cols=62  Identities=11%  Similarity=-0.061  Sum_probs=42.4

Q ss_pred             HHHHHHHHHHHhhhhhHHHHHHHHHHHHH----hCChHHHHHHHHHHHhhCC--CCHHHHHHHHHhhh
Q psy18096         68 GILASQELLDSLIKERINCYNNLAQAQIK----LGSLEPALMSLENVLNLDP--NNIKALQRKAKCLI  129 (131)
Q Consensus        68 y~~Ai~~~~~~~~~~~~~~~~N~a~~~~k----l~~~~~a~~~~~~al~~dp--~~~ka~~rrg~a~~  129 (131)
                      +.+|+.+|.+-.++..+.+++|++.+|..    .+++++|+..+.++++.+|  +++.+++..|.+|.
T Consensus        69 ~~~A~~~~~~A~~~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~  136 (212)
T 3rjv_A           69 YPQARQLAEKAVEAGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYA  136 (212)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHH
Confidence            55666666665555666777777777776    6777777777777777776  34777777776664

>1hxv_A Trigger factor; FKBP fold, ppiase, chaperone; NMR {Mycoplasma genitalium} SCOP: d.26.1.1

Probab=97.67  E-value=1.7e-05  Score=49.20  Aligned_cols=42  Identities=14%  Similarity=0.217  Sum_probs=34.5

Q ss_pred             CcchhcccCCCcEEEEEEc-CCCCCCCCCCCCCCCCCCceEEEEEeeccc
Q psy18096          1 MDYVLPLMETGEECQIEIT-ARFGYGDKGEPSKSIPPGAKLYYSLTLHSV   49 (131)
Q Consensus         1 ld~~l~~M~~gE~~~v~i~-~~~ayG~~G~~~~~ip~~~~~~~~v~l~~~   49 (131)
                      +|.+|..|++||+..|+|+ |.- ||+.+.      +++++.|+|+|+++
T Consensus        70 ~ee~L~Gmk~Ge~~~v~i~fP~~-Yg~~~~------~g~~l~F~V~l~~V  112 (113)
T 1hxv_A           70 FETGLIAMKVNQKKTLALTFPSD-YHVKEL------QSKPVTFEVVLKAI  112 (113)
T ss_dssp             HHHHHHTSCSSEEEEECCCCCTT-SSSSGG------GSCCCEEEEEECCB
T ss_pred             HHHHHCCCCCCCEEEEEEeCchh-hCcCCC------CCCEEEEEEEEEEE
Confidence            3689999999999999996 444 887663      46889999999876

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=97.64  E-value=8.4e-05  Score=53.86  Aligned_cols=62  Identities=18%  Similarity=0.102  Sum_probs=40.1

Q ss_pred             HHHHHHHHHH--Hhhhhh----HHHHHHHHHHHHHhCChHHHHHHHHHHHhh------CCCCHHHHHHHHHhhh
Q psy18096         68 GILASQELLD--SLIKER----INCYNNLAQAQIKLGSLEPALMSLENVLNL------DPNNIKALQRKAKCLI  129 (131)
Q Consensus        68 y~~Ai~~~~~--~~~~~~----~~~~~N~a~~~~kl~~~~~a~~~~~~al~~------dp~~~ka~~rrg~a~~  129 (131)
                      |.+|+.+|++  ++.+..    ..++.++|.+|..+|+|++|+..+++++++      +|....+++..|.++.
T Consensus        64 ~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~  137 (411)
T 4a1s_A           64 CRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLK  137 (411)
T ss_dssp             HHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHH
Confidence            6777777766  333322    246667777777777777777777777766      5666666666666654

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=97.63  E-value=0.00032  Score=48.30  Aligned_cols=60  Identities=8%  Similarity=-0.146  Sum_probs=38.2

Q ss_pred             HHHHHHHHHHHhhhhhHHHHHHHHHHHHH----hCChHHHHHHHHHHHhhCCCCHHHHHHHHHhhh
Q psy18096         68 GILASQELLDSLIKERINCYNNLAQAQIK----LGSLEPALMSLENVLNLDPNNIKALQRKAKCLI  129 (131)
Q Consensus        68 y~~Ai~~~~~~~~~~~~~~~~N~a~~~~k----l~~~~~a~~~~~~al~~dp~~~ka~~rrg~a~~  129 (131)
                      |.+|+.+|++-+....+.++.|+|.+|..    .+++++|+..++++++.+|  ..+++..|.++.
T Consensus       166 ~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~  229 (273)
T 1ouv_A          166 LKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN--GGGCFNLGAMQY  229 (273)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC--HHHHHHHHHHHH
Confidence            55666666653333455666677777777    7777777777777776654  666666666654

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=97.63  E-value=0.00014  Score=52.68  Aligned_cols=63  Identities=11%  Similarity=0.146  Sum_probs=49.6

Q ss_pred             HHHHHHHHHH--Hh-------hhhhHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCC------HHHHHHHHHhhhc
Q psy18096         68 GILASQELLD--SL-------IKERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNN------IKALQRKAKCLIL  130 (131)
Q Consensus        68 y~~Ai~~~~~--~~-------~~~~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~~------~ka~~rrg~a~~~  130 (131)
                      |.+|+.++.+  ++       .+....+++|+|.+|..+|+|++|+..+.+++.+.+..      ..+++..|.++..
T Consensus       159 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~  236 (383)
T 3ulq_A          159 TYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNS  236 (383)
T ss_dssp             HHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHH
Confidence            5666666665  11       56677899999999999999999999999999986543      3588888887753

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=97.62  E-value=0.00017  Score=42.88  Aligned_cols=50  Identities=14%  Similarity=-0.024  Sum_probs=44.5

Q ss_pred             HHHHHHHHHH--HhhhhhHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCC
Q psy18096         68 GILASQELLD--SLIKERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNN  117 (131)
Q Consensus        68 y~~Ai~~~~~--~~~~~~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~~  117 (131)
                      ..+|..++.+  .++|..+.++..+|..+++.|+|++|+..+.++++.+|.+
T Consensus        25 ~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~   76 (93)
T 3bee_A           25 TDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPN   76 (93)
T ss_dssp             CHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTT
T ss_pred             CHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence            4677777777  7889999999999999999999999999999999999874

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=97.62  E-value=0.00021  Score=44.27  Aligned_cols=62  Identities=15%  Similarity=-0.028  Sum_probs=46.6

Q ss_pred             HHHHHHHHHH--Hh------hhhhHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCC------CCHHHHHHHHHhhh
Q psy18096         68 GILASQELLD--SL------IKERINCYNNLAQAQIKLGSLEPALMSLENVLNLDP------NNIKALQRKAKCLI  129 (131)
Q Consensus        68 y~~Ai~~~~~--~~------~~~~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp------~~~ka~~rrg~a~~  129 (131)
                      |.+|+.++.+  ++      .+....++.|+|.++..+|++++|+..+++++.+.+      ....+++..|.++.
T Consensus        65 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~  140 (164)
T 3ro3_A           65 FETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYT  140 (164)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHH
Confidence            7777777776  21      233577899999999999999999999999998742      22566777776654

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=97.62  E-value=0.00022  Score=42.33  Aligned_cols=51  Identities=22%  Similarity=0.140  Sum_probs=45.3

Q ss_pred             hhhhHHHHHHHHHHHHHhCC---hHHHHHHHHHHHhhCCCCHHHHHHHHHhhhc
Q psy18096         80 IKERINCYNNLAQAQIKLGS---LEPALMSLENVLNLDPNNIKALQRKAKCLIL  130 (131)
Q Consensus        80 ~~~~~~~~~N~a~~~~kl~~---~~~a~~~~~~al~~dp~~~ka~~rrg~a~~~  130 (131)
                      .|.++.++..+|.++...++   .++|...++++|++||++++|++-.|.+++.
T Consensus         2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~   55 (93)
T 3bee_A            2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFI   55 (93)
T ss_dssp             CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHH
Confidence            46678899999999987766   7999999999999999999999999988764

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=97.60  E-value=0.00015  Score=52.52  Aligned_cols=62  Identities=19%  Similarity=0.096  Sum_probs=54.0

Q ss_pred             HHHHHHHHHH--Hh------hhhhHHHHHHHHHHHHHhCChHHHHHHHHHHHhh------CCCCHHHHHHHHHhhh
Q psy18096         68 GILASQELLD--SL------IKERINCYNNLAQAQIKLGSLEPALMSLENVLNL------DPNNIKALQRKAKCLI  129 (131)
Q Consensus        68 y~~Ai~~~~~--~~------~~~~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~------dp~~~ka~~rrg~a~~  129 (131)
                      |.+|+.++.+  ++      .+....++.++|.+|..+|++++|+..+.+++.+      +|....+++..|.++.
T Consensus       102 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~  177 (411)
T 4a1s_A          102 YNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYH  177 (411)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHH
Confidence            7788888777  33      5788899999999999999999999999999998      6777889999888875

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=97.60  E-value=0.00037  Score=48.84  Aligned_cols=63  Identities=24%  Similarity=0.185  Sum_probs=47.7

Q ss_pred             HHHHHHHHHHHh-------h-hhhHHHHHHHHHHHHHhCChHHHHHHHHHHH---hhCCCC----HHHHHHHHHhhhc
Q psy18096         68 GILASQELLDSL-------I-KERINCYNNLAQAQIKLGSLEPALMSLENVL---NLDPNN----IKALQRKAKCLIL  130 (131)
Q Consensus        68 y~~Ai~~~~~~~-------~-~~~~~~~~N~a~~~~kl~~~~~a~~~~~~al---~~dp~~----~ka~~rrg~a~~~  130 (131)
                      |.+|+..+.+-+       + .....+++|+|.+|..+|+|++|+..+++++   +..|++    +.+++..|.++..
T Consensus       131 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~  208 (293)
T 2qfc_A          131 YEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYL  208 (293)
T ss_dssp             HHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHH
Confidence            667777776611       1 1236689999999999999999999999999   445653    2688999988753

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=97.56  E-value=0.00024  Score=50.24  Aligned_cols=54  Identities=13%  Similarity=-0.057  Sum_probs=48.6

Q ss_pred             HHHHHHHHHH--HhhhhhHHHHHHHHHHHHHhCChHH-HHHHHHHHHhhCCCCHHHH
Q psy18096         68 GILASQELLD--SLIKERINCYNNLAQAQIKLGSLEP-ALMSLENVLNLDPNNIKAL  121 (131)
Q Consensus        68 y~~Ai~~~~~--~~~~~~~~~~~N~a~~~~kl~~~~~-a~~~~~~al~~dp~~~ka~  121 (131)
                      |.+|+..|.+  +++|.++.++.|++.++..+|++.+ +...++++++++|+++.+.
T Consensus       216 ~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~  272 (291)
T 3mkr_A          216 WEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIK  272 (291)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHHH
Confidence            8999999998  8889999999999999999999987 5678899999999997543

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=97.55  E-value=0.00014  Score=50.99  Aligned_cols=63  Identities=21%  Similarity=0.173  Sum_probs=48.5

Q ss_pred             HHHHHHHHHH--Hhh------hhhHHHHHHHHHHHHHhCChHHHHHHHHHHHh-------hCCCCHHHHHHHHHhhhc
Q psy18096         68 GILASQELLD--SLI------KERINCYNNLAQAQIKLGSLEPALMSLENVLN-------LDPNNIKALQRKAKCLIL  130 (131)
Q Consensus        68 y~~Ai~~~~~--~~~------~~~~~~~~N~a~~~~kl~~~~~a~~~~~~al~-------~dp~~~ka~~rrg~a~~~  130 (131)
                      |.+|+.++.+  ++.      .....+++|+|.+|..+|+|++|+..++++|+       ..+....+++..|.++..
T Consensus       131 ~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~  208 (293)
T 3u3w_A          131 YEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYL  208 (293)
T ss_dssp             HHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHH
Confidence            7888888887  211      12355899999999999999999999999994       234456788888888753

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=97.53  E-value=0.00016  Score=50.15  Aligned_cols=62  Identities=16%  Similarity=0.135  Sum_probs=42.0

Q ss_pred             HHHHHHHHHH--Hh------hhhhHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCC------HHHHHHHHHhhh
Q psy18096         68 GILASQELLD--SL------IKERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNN------IKALQRKAKCLI  129 (131)
Q Consensus        68 y~~Ai~~~~~--~~------~~~~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~~------~ka~~rrg~a~~  129 (131)
                      |.+|+.++.+  ++      .+....++.++|.++..+|++++|+..+.+++++.|..      ..+++..|.++.
T Consensus        59 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~  134 (338)
T 3ro2_A           59 YAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYH  134 (338)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHH
Confidence            6666666655  11      45556777788888888888888888888888876543      336666666654

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=97.52  E-value=0.00026  Score=53.34  Aligned_cols=62  Identities=6%  Similarity=-0.113  Sum_probs=50.6

Q ss_pred             HHHHHHHHHH----------HhhhhhHHHHHHHHHHHHHhCChHHHHHHHHHHHhh--------CCCCHHHHHHHHHhhh
Q psy18096         68 GILASQELLD----------SLIKERINCYNNLAQAQIKLGSLEPALMSLENVLNL--------DPNNIKALQRKAKCLI  129 (131)
Q Consensus        68 y~~Ai~~~~~----------~~~~~~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~--------dp~~~ka~~rrg~a~~  129 (131)
                      |.+|+.+|.+          .-.|..+..++|+|.+|..+|+|++|+..+.++|.+        .|+=...|++.|.+|.
T Consensus       314 ~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~  393 (433)
T 3qww_A          314 PSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYM  393 (433)
T ss_dssp             HHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHH
Confidence            7788888877          335778899999999999999999999999999975        2444667777777764

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=97.51  E-value=0.00026  Score=50.78  Aligned_cols=62  Identities=19%  Similarity=0.073  Sum_probs=43.3

Q ss_pred             HHHHHHHHHH--Hh------hhhhHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCC------HHHHHHHHHhhh
Q psy18096         68 GILASQELLD--SL------IKERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNN------IKALQRKAKCLI  129 (131)
Q Consensus        68 y~~Ai~~~~~--~~------~~~~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~~------~ka~~rrg~a~~  129 (131)
                      |.+|+.++.+  ++      .+....++.|+|.+|..+|++++|+..+++++.+.|..      ..+++..|.++.
T Consensus       203 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~  278 (406)
T 3sf4_A          203 FRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYT  278 (406)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHH
Confidence            6666666665  11      23344578888888888888888888888888777655      667777777664

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=97.47  E-value=0.0002  Score=51.33  Aligned_cols=62  Identities=15%  Similarity=0.093  Sum_probs=39.1

Q ss_pred             HHHHHHHHHH--H------hhhhhHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCC------HHHHHHHHHhhh
Q psy18096         68 GILASQELLD--S------LIKERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNN------IKALQRKAKCLI  129 (131)
Q Consensus        68 y~~Ai~~~~~--~------~~~~~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~~------~ka~~rrg~a~~  129 (131)
                      |.+|+.++++  +      -.+....++.++|.++..+|++++|+..+.+++.+.|..      ..+++..|.++.
T Consensus        63 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~  138 (406)
T 3sf4_A           63 YAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYH  138 (406)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHH
Confidence            5555555555  1      134556677777777777777777777777777776543      446666666554

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=97.46  E-value=0.001  Score=41.86  Aligned_cols=60  Identities=13%  Similarity=-0.128  Sum_probs=45.3

Q ss_pred             HHHHHHHHHHHhhhhhHHHHHHHHHHHHH----hCChHHHHHHHHHHHhhCCCCHHHHHHHHHhhh
Q psy18096         68 GILASQELLDSLIKERINCYNNLAQAQIK----LGSLEPALMSLENVLNLDPNNIKALQRKAKCLI  129 (131)
Q Consensus        68 y~~Ai~~~~~~~~~~~~~~~~N~a~~~~k----l~~~~~a~~~~~~al~~dp~~~ka~~rrg~a~~  129 (131)
                      +.+|+++|.+-.+...+.+.+|++.+|..    .+++++|+..+.++.+.  .++.|+++.|..|.
T Consensus        41 ~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~  104 (138)
T 1klx_A           41 KQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQY  104 (138)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC--CCHHHHHHHHHHHH
Confidence            55677777774445677788888888888    78888888888888766  57788888877764

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=97.44  E-value=0.0002  Score=50.75  Aligned_cols=46  Identities=9%  Similarity=0.078  Sum_probs=34.7

Q ss_pred             hHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCC------HHHHHHHHHhhh
Q psy18096         83 RINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNN------IKALQRKAKCLI  129 (131)
Q Consensus        83 ~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~~------~ka~~rrg~a~~  129 (131)
                      ...++.|+|.+|.. |++++|+..+++|+.+.|..      ..++++.|.++.
T Consensus       115 ~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~  166 (307)
T 2ifu_A          115 AAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLV  166 (307)
T ss_dssp             HHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHH
Confidence            45678888888888 88888888888888877643      567777777664

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=97.38  E-value=0.0005  Score=47.57  Aligned_cols=62  Identities=19%  Similarity=0.073  Sum_probs=42.7

Q ss_pred             HHHHHHHHHH--Hh------hhhhHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCC------HHHHHHHHHhhh
Q psy18096         68 GILASQELLD--SL------IKERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNN------IKALQRKAKCLI  129 (131)
Q Consensus        68 y~~Ai~~~~~--~~------~~~~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~~------~ka~~rrg~a~~  129 (131)
                      |.+|+.++++  ++      .+....++.++|.++..+|++++|+..+++++.+.+..      ..+++..|.++.
T Consensus       199 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~  274 (338)
T 3ro2_A          199 FRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYT  274 (338)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHH
Confidence            6666666665  11      23344577888888888888888888888888776655      667777776664

>3pr9_A FKBP-type peptidyl-prolyl CIS-trans isomerase; FKBP protein, chaperone; 1.95A {Methanocaldococcus jannaschii} SCOP: d.26.1.0 PDB: 3pra_A

Probab=97.38  E-value=4.5e-05  Score=49.93  Aligned_cols=29  Identities=21%  Similarity=0.454  Sum_probs=26.9

Q ss_pred             CcchhcccCCCcEEEEEEcCCCCCCCCCC
Q psy18096          1 MDYVLPLMETGEECQIEITARFGYGDKGE   29 (131)
Q Consensus         1 ld~~l~~M~~gE~~~v~i~~~~ayG~~G~   29 (131)
                      +|.+|..|++||+..|+|+|..|||..+.
T Consensus        57 ~eeaL~gm~~Ge~~~v~Ipp~~aYG~~~~   85 (157)
T 3pr9_A           57 LDEAILEMDVGEEREVVLPPEKAFGKRDP   85 (157)
T ss_dssp             HHHHHHHCCTTCEEEEEECGGGTTCCCCG
T ss_pred             HHHHHcCCCCCCEEEEEECcHHhcCCCCh
Confidence            47899999999999999999999999884

>3cgm_A SLYD, peptidyl-prolyl CIS-trans isomerase; chaperone function, two domain P rotamase; 2.41A {Thermus thermophilus} PDB: 3cgn_A 3luo_A*

Probab=97.29  E-value=0.00014  Score=47.58  Aligned_cols=28  Identities=29%  Similarity=0.395  Sum_probs=26.2

Q ss_pred             CcchhcccCCCcEEEEEEcCCCCCCCCC
Q psy18096          1 MDYVLPLMETGEECQIEITARFGYGDKG   28 (131)
Q Consensus         1 ld~~l~~M~~gE~~~v~i~~~~ayG~~G   28 (131)
                      +|.+|..|++||+..|+|+|..|||..+
T Consensus        40 ~e~aL~Gm~~Ge~~~v~ipp~~aYG~~~   67 (158)
T 3cgm_A           40 LEEALEGREEGEAFQAHVPAEKAYGPHD   67 (158)
T ss_dssp             HHHHHTTCBTTCEEEEEECGGGTTCCCC
T ss_pred             HHHHHcCCCCCCEEEEEECcHHHcCCCC
Confidence            4789999999999999999999999887

>1ix5_A FKBP; ppiase, isomerase; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.26.1.1

Probab=97.24  E-value=9.3e-05  Score=48.09  Aligned_cols=29  Identities=31%  Similarity=0.540  Sum_probs=26.7

Q ss_pred             CcchhcccCCCcEEEEEEcCCCCCCCCCC
Q psy18096          1 MDYVLPLMETGEECQIEITARFGYGDKGE   29 (131)
Q Consensus         1 ld~~l~~M~~gE~~~v~i~~~~ayG~~G~   29 (131)
                      +|.+|..|++||+..|+|+|..|||..+.
T Consensus        58 ~eeaL~gm~~Ge~~~v~ipp~~aYG~~~~   86 (151)
T 1ix5_A           58 FEEAVLDMEVGDEKTVKIPAEKAYGNRNE   86 (151)
T ss_dssp             HHHHHHTCCTTCCCEEEECTTTSSCSCCS
T ss_pred             HHHHHcCCCCCCEEEEEECcHHHCCCCCc
Confidence            47899999999999999999999999873

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=97.23  E-value=0.00064  Score=51.96  Aligned_cols=62  Identities=8%  Similarity=-0.175  Sum_probs=50.3

Q ss_pred             HHHHHHHHHH----------HhhhhhHHHHHHHHHHHHHhCChHHHHHHHHHHHhhC-----C---CCHHHHHHHHHhhh
Q psy18096         68 GILASQELLD----------SLIKERINCYNNLAQAQIKLGSLEPALMSLENVLNLD-----P---NNIKALQRKAKCLI  129 (131)
Q Consensus        68 y~~Ai~~~~~----------~~~~~~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~d-----p---~~~ka~~rrg~a~~  129 (131)
                      |.+|+.+|.+          .-.|..+..++|+|.+|..+|+|++|+..+.++|.+-     |   +-..++.+.|.+|.
T Consensus       325 ~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~  404 (490)
T 3n71_A          325 YHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNW  404 (490)
T ss_dssp             HHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence            8888888877          3357788999999999999999999999999999853     3   33566777777664

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=97.22  E-value=0.0011  Score=47.25  Aligned_cols=62  Identities=10%  Similarity=-0.221  Sum_probs=37.9

Q ss_pred             HHHHHHHHHHHh---hhhh-HHHHHHHHHHHHHhCChHHHHHHHHHHHhhC--CC-CHHHHHHHHHhhh
Q psy18096         68 GILASQELLDSL---IKER-INCYNNLAQAQIKLGSLEPALMSLENVLNLD--PN-NIKALQRKAKCLI  129 (131)
Q Consensus        68 y~~Ai~~~~~~~---~~~~-~~~~~N~a~~~~kl~~~~~a~~~~~~al~~d--p~-~~ka~~rrg~a~~  129 (131)
                      |.+|+..++.-.   ++.. ..++.+++.++..+|++++|+..+++++.-.  |. ...++|++|.++.
T Consensus       151 ~~dA~~~l~~a~~~~d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~  219 (282)
T 4f3v_A          151 WTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARR  219 (282)
T ss_dssp             HHHHHHHHTTGGGCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhccCCcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHH
Confidence            555555554411   1221 3467777777777777777777777776543  54 5667777777664

>4dt4_A FKBP-type 16 kDa peptidyl-prolyl CIS-trans isomer; FKBP domain, IF domain, chaperone, peptidyl-prolyl isomerase isomerase; 1.35A {Escherichia coli}

Probab=97.22  E-value=0.0002  Score=47.40  Aligned_cols=28  Identities=11%  Similarity=0.285  Sum_probs=26.2

Q ss_pred             CcchhcccCCCcEEEEEEcCCCCCCCCC
Q psy18096          1 MDYVLPLMETGEECQIEITARFGYGDKG   28 (131)
Q Consensus         1 ld~~l~~M~~gE~~~v~i~~~~ayG~~G   28 (131)
                      +|.+|..|++||+..|+|+|..|||+.+
T Consensus        68 ~eeaL~gm~~Ge~~~v~Ipp~~AYG~~~   95 (169)
T 4dt4_A           68 LEQHLLGLKVGDKTTFSLEPDAAFGVPS   95 (169)
T ss_dssp             HHHHHTTCCTTCEEEEEECGGGTTCCCC
T ss_pred             HHHHHcCCCCCCEEEEEEChHHhcCCCC
Confidence            4789999999999999999999999877

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=97.21  E-value=0.0007  Score=50.84  Aligned_cols=62  Identities=16%  Similarity=0.054  Sum_probs=51.1

Q ss_pred             HHHHHHHHHH----------HhhhhhHHHHHHHHHHHHHhCChHHHHHHHHHHHhhC--------CCCHHHHHHHHHhhh
Q psy18096         68 GILASQELLD----------SLIKERINCYNNLAQAQIKLGSLEPALMSLENVLNLD--------PNNIKALQRKAKCLI  129 (131)
Q Consensus        68 y~~Ai~~~~~----------~~~~~~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~d--------p~~~ka~~rrg~a~~  129 (131)
                      |.+|+..+.+          .-.+.....++|+|.+|..+|+|++|+..+.++|.+-        |.-...+++.|.+|.
T Consensus       303 ~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~  382 (429)
T 3qwp_A          303 WEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQL  382 (429)
T ss_dssp             HHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHH
Confidence            8889988887          3457788999999999999999999999999999752        334567777777764

>2kr7_A FKBP-type peptidyl-prolyl CIS-trans isomerase SLY; protein, rotamase; NMR {Helicobacter pylori}

Probab=97.21  E-value=0.00025  Score=45.99  Aligned_cols=29  Identities=17%  Similarity=0.207  Sum_probs=26.7

Q ss_pred             CcchhcccCCCcEEEEEEcCCCCCCCCCC
Q psy18096          1 MDYVLPLMETGEECQIEITARFGYGDKGE   29 (131)
Q Consensus         1 ld~~l~~M~~gE~~~v~i~~~~ayG~~G~   29 (131)
                      +|.+|..|++||+..|+|+|..|||..+.
T Consensus        50 ~e~aL~gm~~Ge~~~v~ipp~~aYG~~~~   78 (151)
T 2kr7_A           50 LEKAVLKAQIGEWEEVVIAPEEAYGVYES   78 (151)
T ss_dssp             HHHHHTTCCBTCEEEEEECGGGTTCSSCS
T ss_pred             HHHHHcCCCCCCEEEEEEecHHHcCCCCc
Confidence            47899999999999999999999999873

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=97.14  E-value=0.0011  Score=43.05  Aligned_cols=63  Identities=11%  Similarity=0.008  Sum_probs=50.0

Q ss_pred             HHHHHHHHHH--HhhhhhHHHHHHHHHHHHHhCChHHHHHHHHHHHh------hCCCCHHHHHHHHHhhhc
Q psy18096         68 GILASQELLD--SLIKERINCYNNLAQAQIKLGSLEPALMSLENVLN------LDPNNIKALQRKAKCLIL  130 (131)
Q Consensus        68 y~~Ai~~~~~--~~~~~~~~~~~N~a~~~~kl~~~~~a~~~~~~al~------~dp~~~ka~~rrg~a~~~  130 (131)
                      |.+|.+.+..  ........++.++|.++..+|+|++|+..+.+++.      ..|....+++..|.++..
T Consensus         8 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~   78 (203)
T 3gw4_A            8 YALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERM   78 (203)
T ss_dssp             HHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHH
Confidence            7788883332  22235788999999999999999999999999999      556677888888887753

>2k8i_A SLYD, peptidyl-prolyl CIS-trans isomerase; ppiase, chaperone, rotamase; NMR {Escherichia coli}

Probab=97.11  E-value=0.00053  Score=45.43  Aligned_cols=28  Identities=21%  Similarity=0.392  Sum_probs=26.2

Q ss_pred             CcchhcccCCCcEEEEEEcCCCCCCCCC
Q psy18096          1 MDYVLPLMETGEECQIEITARFGYGDKG   28 (131)
Q Consensus         1 ld~~l~~M~~gE~~~v~i~~~~ayG~~G   28 (131)
                      +|.+|..|++||+..|+|+|..|||..+
T Consensus        45 ~eeaL~Gm~~Ge~~~v~ippe~aYG~~~   72 (171)
T 2k8i_A           45 LETALEGHEVGDKFDVAVGANDAYGQYD   72 (171)
T ss_dssp             HHHHHTTCCTTCEEEEEEETTTSSCCCC
T ss_pred             HHHHHcCCCCCCEEEEEECcHHhcCCCC
Confidence            4789999999999999999999999987

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=97.09  E-value=0.0033  Score=45.40  Aligned_cols=48  Identities=15%  Similarity=0.070  Sum_probs=41.4

Q ss_pred             HHHHHHHHHH--H-----hhhhhHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCC
Q psy18096         68 GILASQELLD--S-----LIKERINCYNNLAQAQIKLGSLEPALMSLENVLNLDP  115 (131)
Q Consensus        68 y~~Ai~~~~~--~-----~~~~~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp  115 (131)
                      |.+|+.++.+  +     ..+....++.|+|.+|.++|++++|+..+++++++.+
T Consensus       238 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  292 (378)
T 3q15_A          238 DQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHIT  292 (378)
T ss_dssp             HHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence            7778777777  2     5567789999999999999999999999999999843

>3prb_A FKBP-type peptidyl-prolyl CIS-trans isomerase; chaperone; 2.20A {Methanocaldococcus jannaschii} PDB: 3prd_A

Probab=97.09  E-value=0.00017  Score=50.07  Aligned_cols=28  Identities=21%  Similarity=0.476  Sum_probs=26.2

Q ss_pred             CcchhcccCCCcEEEEEEcCCCCCCCCC
Q psy18096          1 MDYVLPLMETGEECQIEITARFGYGDKG   28 (131)
Q Consensus         1 ld~~l~~M~~gE~~~v~i~~~~ayG~~G   28 (131)
                      +|.+|..|++||+..|+|+|..|||..+
T Consensus        57 ~eeaL~Gm~vGek~~v~Ippe~AYGe~~   84 (231)
T 3prb_A           57 LDEAILEMDVGEEREVVLPPEKAFGKRD   84 (231)
T ss_dssp             HHHHHHTCCTTCEEEEEECGGGTTCCCC
T ss_pred             HHHHHcCCCCCCEEEEEeCcHHhcCCCC
Confidence            4789999999999999999999999877

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=97.08  E-value=0.0011  Score=49.88  Aligned_cols=46  Identities=9%  Similarity=-0.047  Sum_probs=40.4

Q ss_pred             HHHHHHHHHH----------HhhhhhHHHHHHHHHHHHHhCChHHHHHHHHHHHhh
Q psy18096         68 GILASQELLD----------SLIKERINCYNNLAQAQIKLGSLEPALMSLENVLNL  113 (131)
Q Consensus        68 y~~Ai~~~~~----------~~~~~~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~  113 (131)
                      |.+|+.++.+          .-.|.....++|+|..|..+|+|++|+..+.+||.+
T Consensus       356 ~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i  411 (433)
T 3qww_A          356 WEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIAI  411 (433)
T ss_dssp             HHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHH
Confidence            7777777777          335888899999999999999999999999999985

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=97.04  E-value=0.0025  Score=45.45  Aligned_cols=54  Identities=20%  Similarity=0.069  Sum_probs=46.6

Q ss_pred             HHHHHHHHHHHh-h---hh-hHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHH
Q psy18096         68 GILASQELLDSL-I---KE-RINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQ  122 (131)
Q Consensus        68 y~~Ai~~~~~~~-~---~~-~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~~~ka~~  122 (131)
                      +.+|+..|++-+ .   |. ...+.+++|.|+.++|+.++|...+++++..+|+ ..++.
T Consensus       187 ~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~  245 (282)
T 4f3v_A          187 FTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAA  245 (282)
T ss_dssp             HHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHH
T ss_pred             HHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHH
Confidence            999999999822 1   33 6679999999999999999999999999999998 66653

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=97.03  E-value=0.0025  Score=48.21  Aligned_cols=59  Identities=15%  Similarity=0.051  Sum_probs=51.8

Q ss_pred             HHHHHHHH--H-hhhhhHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCH-HHHHHHHHhh
Q psy18096         70 LASQELLD--S-LIKERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNI-KALQRKAKCL  128 (131)
Q Consensus        70 ~Ai~~~~~--~-~~~~~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~~~-ka~~rrg~a~  128 (131)
                      +|+..|++  . +.|....++.+++..+.++|++++|+..++++|+++|++. .+|...|..+
T Consensus       304 ~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~  366 (530)
T 2ooe_A          304 EAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFA  366 (530)
T ss_dssp             HHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHH
Confidence            68888888  3 5688999999999999999999999999999999999985 6888877654

>2kfw_A FKBP-type peptidyl-prolyl CIS-trans isomerase SLYD; protein, cobalt, copper, cytoplasm, metal- binding, nickel, rotamase, zinc; NMR {Escherichia coli}

Probab=97.02  E-value=0.00036  Score=47.25  Aligned_cols=29  Identities=24%  Similarity=0.420  Sum_probs=26.6

Q ss_pred             CcchhcccCCCcEEEEEEcCCCCCCCCCC
Q psy18096          1 MDYVLPLMETGEECQIEITARFGYGDKGE   29 (131)
Q Consensus         1 ld~~l~~M~~gE~~~v~i~~~~ayG~~G~   29 (131)
                      +|.+|..|++||+..|+|+|..|||.++.
T Consensus        45 ~eeaL~Gm~vGe~~~v~Ippe~aYGe~~~   73 (196)
T 2kfw_A           45 LETALEGHEVGDKFDVAVGANDAYGQYDE   73 (196)
T ss_dssp             HHHHHSSSCTTCEEEEECSTTTTSSCCCT
T ss_pred             HHHHHcCCCCCCEEEEEeCcHHhcCCCCh
Confidence            47899999999999999999999998873

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=96.97  E-value=0.0034  Score=47.48  Aligned_cols=60  Identities=13%  Similarity=0.021  Sum_probs=51.4

Q ss_pred             HHHHHHHH--HhhhhhHHHHHHHHHHHHH-------hCChH-------HHHHHHHHHHh-hCCCCHHHHHHHHHhhh
Q psy18096         70 LASQELLD--SLIKERINCYNNLAQAQIK-------LGSLE-------PALMSLENVLN-LDPNNIKALQRKAKCLI  129 (131)
Q Consensus        70 ~Ai~~~~~--~~~~~~~~~~~N~a~~~~k-------l~~~~-------~a~~~~~~al~-~dp~~~ka~~rrg~a~~  129 (131)
                      +|+..|++  ...|....+|.++|..+.+       +|+++       +|+..+++|++ ++|++...|+..|..+.
T Consensus       256 ~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~  332 (530)
T 2ooe_A          256 RVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEE  332 (530)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence            45556665  5568899999999999997       79987       99999999997 89999999999988764

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=96.92  E-value=0.0021  Score=49.16  Aligned_cols=46  Identities=9%  Similarity=-0.154  Sum_probs=40.1

Q ss_pred             HHHHHHHHHH----------HhhhhhHHHHHHHHHHHHHhCChHHHHHHHHHHHhh
Q psy18096         68 GILASQELLD----------SLIKERINCYNNLAQAQIKLGSLEPALMSLENVLNL  113 (131)
Q Consensus        68 y~~Ai~~~~~----------~~~~~~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~  113 (131)
                      |.+|+.++.+          .-.|.....++|+|..|..+|+|++|+..+.+||.+
T Consensus       367 ~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i  422 (490)
T 3n71_A          367 YEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAI  422 (490)
T ss_dssp             HHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence            7777777766          345888899999999999999999999999999975

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=96.82  E-value=0.0039  Score=46.68  Aligned_cols=58  Identities=21%  Similarity=0.078  Sum_probs=25.8

Q ss_pred             HHHHHHHHHHHhhhhhHHHHHHHHHH-H--HHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHhh
Q psy18096         68 GILASQELLDSLIKERINCYNNLAQA-Q--IKLGSLEPALMSLENVLNLDPNNIKALQRKAKCL  128 (131)
Q Consensus        68 y~~Ai~~~~~~~~~~~~~~~~N~a~~-~--~kl~~~~~a~~~~~~al~~dp~~~ka~~rrg~a~  128 (131)
                      +.+|+.+|.+-. +..+.+++|+|.+ +  ...+++++|+..+.++++.  +++.|++..|..|
T Consensus       233 ~~~A~~~~~~aa-~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y  293 (452)
T 3e4b_A          233 EKTAQALLEKIA-PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA--DQPRAELLLGKLY  293 (452)
T ss_dssp             HHHHHHHHHHHG-GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT--TCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHc-CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHH
Confidence            445555444433 4444444444444 2  2344444444444444422  2444444444443

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=96.81  E-value=0.0027  Score=47.68  Aligned_cols=46  Identities=13%  Similarity=-0.051  Sum_probs=40.2

Q ss_pred             HHHHHHHHHH----------HhhhhhHHHHHHHHHHHHHhCChHHHHHHHHHHHhh
Q psy18096         68 GILASQELLD----------SLIKERINCYNNLAQAQIKLGSLEPALMSLENVLNL  113 (131)
Q Consensus        68 y~~Ai~~~~~----------~~~~~~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~  113 (131)
                      |.+|+.++.+          .-.|.....++|+|..|..+|+|++|+..+.+|+.+
T Consensus       345 ~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i  400 (429)
T 3qwp_A          345 LEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDI  400 (429)
T ss_dssp             HHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence            7777777776          446888999999999999999999999999999975

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=96.80  E-value=0.006  Score=38.20  Aligned_cols=56  Identities=14%  Similarity=-0.057  Sum_probs=47.0

Q ss_pred             HHHHHHHHHHHhhhhhHHHHHHHHHHHHH----hCChHHHHHHHHHHHhhCCCCHHHHHHHH
Q psy18096         68 GILASQELLDSLIKERINCYNNLAQAQIK----LGSLEPALMSLENVLNLDPNNIKALQRKA  125 (131)
Q Consensus        68 y~~Ai~~~~~~~~~~~~~~~~N~a~~~~k----l~~~~~a~~~~~~al~~dp~~~ka~~rrg  125 (131)
                      +.+|+.+|++-.....+.+..|++.+|..    .+++++|+..+.+|.+..  +..|.++.+
T Consensus        77 ~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g--~~~A~~~l~  136 (138)
T 1klx_A           77 LRKAAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG--SEDACGILN  136 (138)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHC-
T ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC--CHHHHHHHh
Confidence            78899999985555788999999999999    999999999999999884  566666544

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=96.77  E-value=0.0027  Score=47.54  Aligned_cols=59  Identities=12%  Similarity=-0.022  Sum_probs=31.4

Q ss_pred             HHHHHHHHHHHhhhhhHHHHHHHHHHHHH----hCChHHHHHHHHHHHhhCCCCHHHHHHHHHhh
Q psy18096         68 GILASQELLDSLIKERINCYNNLAQAQIK----LGSLEPALMSLENVLNLDPNNIKALQRKAKCL  128 (131)
Q Consensus        68 y~~Ai~~~~~~~~~~~~~~~~N~a~~~~k----l~~~~~a~~~~~~al~~dp~~~ka~~rrg~a~  128 (131)
                      +.+|+.+|.+-.....+.+++|+|.+|..    .+++++|+..+.++++.+  +..++++.|.+|
T Consensus       347 ~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~Lg~~y  409 (490)
T 2xm6_A          347 HKKAVEWFRKAAAKGEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG--LSAAQVQLGEIY  409 (490)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHH
Confidence            55555555553333445555555555555    555555555555555432  455555555544

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=96.75  E-value=0.0075  Score=45.13  Aligned_cols=60  Identities=15%  Similarity=0.050  Sum_probs=48.2

Q ss_pred             HHHHHHHHHHHhhhhhHHHHHHHHHHHHHhC---ChHHHHHHHHHHHhhCCCCHHHHHHHHHhhh
Q psy18096         68 GILASQELLDSLIKERINCYNNLAQAQIKLG---SLEPALMSLENVLNLDPNNIKALQRKAKCLI  129 (131)
Q Consensus        68 y~~Ai~~~~~~~~~~~~~~~~N~a~~~~kl~---~~~~a~~~~~~al~~dp~~~ka~~rrg~a~~  129 (131)
                      +.+|+.+|.+-.......++.|++.+|...|   ++++|+..+.++++.  +++.+++..|.++.
T Consensus       312 ~~~A~~~~~~a~~~~~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~  374 (490)
T 2xm6_A          312 REQAISWYTKSAEQGDATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK--GEKAAQFNLGNALL  374 (490)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC--CCHHHHHHHHHHHH
Confidence            8888888888555566778888999988866   788899999988876  57888888888765

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=96.66  E-value=0.01  Score=42.58  Aligned_cols=62  Identities=18%  Similarity=0.071  Sum_probs=51.8

Q ss_pred             HHHHHHHHHH--Hhhhh--hHHHHHHHHHHHHHh-----CChHHHHHHHHHHHhhCCCC-HHHHHHHHHhhh
Q psy18096         68 GILASQELLD--SLIKE--RINCYNNLAQAQIKL-----GSLEPALMSLENVLNLDPNN-IKALQRKAKCLI  129 (131)
Q Consensus        68 y~~Ai~~~~~--~~~~~--~~~~~~N~a~~~~kl-----~~~~~a~~~~~~al~~dp~~-~ka~~rrg~a~~  129 (131)
                      -.+|...+++  +++|.  ...+|.-++..|.++     |+.++|..++++||+++|+. ..+++..|..+.
T Consensus       179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~  250 (301)
T 3u64_A          179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALC  250 (301)
T ss_dssp             HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHH
Confidence            4555666666  78888  567999999999996     99999999999999999975 888888887654

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=96.64  E-value=0.014  Score=41.70  Aligned_cols=62  Identities=16%  Similarity=0.042  Sum_probs=47.0

Q ss_pred             HHHHHHHHHH--Hhh--------hhhHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCC-----CHHHHHHHHHhhh
Q psy18096         68 GILASQELLD--SLI--------KERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPN-----NIKALQRKAKCLI  129 (131)
Q Consensus        68 y~~Ai~~~~~--~~~--------~~~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~-----~~ka~~rrg~a~~  129 (131)
                      |.+|+..+.+  ++.        +....++.|+|.++..+|++++|+..+.+++.+.+.     ...+++..|.++.
T Consensus       109 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~  185 (373)
T 1hz4_A          109 LQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSL  185 (373)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHH
Confidence            6777777766  211        456778899999999999999999999999998775     2456666666553

>1w26_A Trigger factor, TF; chaperone, protein folding, ribosome associated protein, nascent chain, cell division, isomerase; 2.7A {Escherichia coli} SCOP: a.223.1.1 d.241.2.1 d.26.1.1 PDB: 2vrh_A 1w2b_5

Probab=96.49  E-value=0.0031  Score=47.51  Aligned_cols=44  Identities=20%  Similarity=0.255  Sum_probs=38.6

Q ss_pred             cchhcccCCCcEEEEEEcCCCCCCCCCCCCCCCCCCceEEEEEeeccccC
Q psy18096          2 DYVLPLMETGEECQIEITARFGYGDKGEPSKSIPPGAKLYYSLTLHSVLP   51 (131)
Q Consensus         2 d~~l~~M~~gE~~~v~i~~~~ayG~~G~~~~~ip~~~~~~~~v~l~~~~~   51 (131)
                      +.+|..|++||+..|.+++..+||..+.      ++.++.|.++++++..
T Consensus       199 ee~L~G~k~Ge~~~v~v~~~~~yg~~~l------ag~~~~F~V~v~~v~~  242 (432)
T 1w26_A          199 EDGIKGHKAGEEFTIDVTFPEEYHAENL------KGKAAKFAINLKKVEE  242 (432)
T ss_dssp             HHHSSSCCSSCEEEEEEECCTTCSCTTT------SSCEEEEEEECCEECC
T ss_pred             HHHhCCCCCCCEEEEEECCchhhCCCCC------CCceEEEEEEEEEEec
Confidence            5789999999999999999999998663      5678999999998864

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=96.32  E-value=0.014  Score=43.53  Aligned_cols=57  Identities=12%  Similarity=-0.024  Sum_probs=26.3

Q ss_pred             HHHHHHHHHH--HhhhhhHHHHHHHHHHHHHh----CChHHHHHHHHHHHhhCCCCHHHHHHHHHh
Q psy18096         68 GILASQELLD--SLIKERINCYNNLAQAQIKL----GSLEPALMSLENVLNLDPNNIKALQRKAKC  127 (131)
Q Consensus        68 y~~Ai~~~~~--~~~~~~~~~~~N~a~~~~kl----~~~~~a~~~~~~al~~dp~~~ka~~rrg~a  127 (131)
                      +.+|+..|.+  +..+.....++|++.+|...    +++++|+..+.++.   |+++.++++.|.+
T Consensus       195 ~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~g~~~a~~~Lg~~  257 (452)
T 3e4b_A          195 QAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA---PGYPASWVSLAQL  257 (452)
T ss_dssp             HHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG---GGSTHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHH
Confidence            4444444444  33333344444444444433    44445555554444   4444444444444

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=96.29  E-value=0.014  Score=41.71  Aligned_cols=62  Identities=13%  Similarity=0.049  Sum_probs=46.5

Q ss_pred             HHHHHHHHHH--Hh------hhhhHHHHHHHHHHHHHhCChHHHHHHHHHHHhhC--------CCCHHHHHHHHHhhh
Q psy18096         68 GILASQELLD--SL------IKERINCYNNLAQAQIKLGSLEPALMSLENVLNLD--------PNNIKALQRKAKCLI  129 (131)
Q Consensus        68 y~~Ai~~~~~--~~------~~~~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~d--------p~~~ka~~rrg~a~~  129 (131)
                      |.+|+..+.+  .+      ......++.|+|.++..+|+|++|+..+.+++.+.        |....++...|.++.
T Consensus        69 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~  146 (373)
T 1hz4_A           69 LTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLW  146 (373)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHH
Confidence            7777777766  11      12335668899999999999999999999999875        344567777777654

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.12  E-value=0.02  Score=41.58  Aligned_cols=53  Identities=15%  Similarity=0.018  Sum_probs=43.6

Q ss_pred             HHHHHHHHHH-------------------HhhhhhHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHH
Q psy18096         68 GILASQELLD-------------------SLIKERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKA  120 (131)
Q Consensus        68 y~~Ai~~~~~-------------------~~~~~~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~~~ka  120 (131)
                      |.+|++.|..                   ...+....++.+++..|.++|+|++|+..+.+++.+.+...++
T Consensus        20 y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~   91 (434)
T 4b4t_Q           20 YNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKS   91 (434)
T ss_dssp             HHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHH
T ss_pred             HHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccch
Confidence            9999999987                   1124456789999999999999999999999999887665444

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=96.03  E-value=0.012  Score=42.54  Aligned_cols=57  Identities=9%  Similarity=-0.106  Sum_probs=44.6

Q ss_pred             HHHHHHHHHH--Hhhhh--hHHHHHHHHHHHHHhCChHHHHHHHHHHHhh----------CCCCHHHHHHHHHh
Q psy18096         68 GILASQELLD--SLIKE--RINCYNNLAQAQIKLGSLEPALMSLENVLNL----------DPNNIKALQRKAKC  127 (131)
Q Consensus        68 y~~Ai~~~~~--~~~~~--~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~----------dp~~~ka~~rrg~a  127 (131)
                      |++|+.+|++  +..|.  ...++.|   |++++|+|++|....+.++++          ||+|+.++.....+
T Consensus       194 ~q~A~~~f~El~~~~p~~~~~~lLln---~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l  264 (310)
T 3mv2_B          194 ATSNFYYYEELSQTFPTWKTQLGLLN---LHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITL  264 (310)
T ss_dssp             TTHHHHHHHHHHTTSCSHHHHHHHHH---HHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCcccHHHHHH---HHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHH
Confidence            7888888887  33333  3456667   999999999999999988887          68999999777443

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=96.00  E-value=0.013  Score=38.03  Aligned_cols=51  Identities=10%  Similarity=-0.053  Sum_probs=45.5

Q ss_pred             hhhhHHHHHHHHHHHHHhC---ChHHHHHHHHHHHhhC-C-CCHHHHHHHHHhhhc
Q psy18096         80 IKERINCYNNLAQAQIKLG---SLEPALMSLENVLNLD-P-NNIKALQRKAKCLIL  130 (131)
Q Consensus        80 ~~~~~~~~~N~a~~~~kl~---~~~~a~~~~~~al~~d-p-~~~ka~~rrg~a~~~  130 (131)
                      .+....+.+|.|.|+.+.+   +..++|..+++++..+ | ++.+++|..|.++..
T Consensus        28 ~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~k   83 (152)
T 1pc2_A           28 GSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYR   83 (152)
T ss_dssp             TCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred             CCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHH
Confidence            4678889999999999988   7779999999999999 7 679999999998864

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=95.87  E-value=0.026  Score=40.91  Aligned_cols=46  Identities=13%  Similarity=0.159  Sum_probs=25.3

Q ss_pred             hHHHHHHHHHHHHHhCChHHHHHHHHHHHhh------CCCCHHHHHHHHHhh
Q psy18096         83 RINCYNNLAQAQIKLGSLEPALMSLENVLNL------DPNNIKALQRKAKCL  128 (131)
Q Consensus        83 ~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~------dp~~~ka~~rrg~a~  128 (131)
                      ...++.|+|.+|..+|+|.+|+..+.+++..      .+..+.++...|+++
T Consensus       134 ~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (434)
T 4b4t_Q          134 KHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVY  185 (434)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHH
Confidence            4455666666666666666666666665543      122344455555444

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=95.73  E-value=0.029  Score=48.22  Aligned_cols=44  Identities=16%  Similarity=0.196  Sum_probs=36.4

Q ss_pred             hhhHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHhhh
Q psy18096         81 KERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCLI  129 (131)
Q Consensus        81 ~~~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~~~ka~~rrg~a~~  129 (131)
                      .....+|.++|.++.++|+|++|+..+.++     ++..+|++.|.++.
T Consensus      1102 vn~p~vWsqLAKAql~~G~~kEAIdsYiKA-----dD~say~eVa~~~~ 1145 (1630)
T 1xi4_A         1102 CNEPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAAN 1145 (1630)
T ss_pred             cCCHHHHHHHHHHHHhCCCHHHHHHHHHhc-----CChHHHHHHHHHHH
Confidence            345778899999999999999999999775     78888888887764

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=95.42  E-value=0.05  Score=32.16  Aligned_cols=48  Identities=8%  Similarity=0.007  Sum_probs=39.1

Q ss_pred             hHHHHHHHHHHHHHhCChHHHHHHHHHHHhhC-------CCCHHHHHHHHHhhhc
Q psy18096         83 RINCYNNLAQAQIKLGSLEPALMSLENVLNLD-------PNNIKALQRKAKCLIL  130 (131)
Q Consensus        83 ~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~d-------p~~~ka~~rrg~a~~~  130 (131)
                      .+.-.+.+|..+++.++|..|+..+.+|++..       +.....+...|.++..
T Consensus         4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~   58 (104)
T 2v5f_A            4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQ   58 (104)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHH
Confidence            34556789999999999999999999999963       3567778888887753

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=95.27  E-value=0.099  Score=39.58  Aligned_cols=42  Identities=19%  Similarity=0.169  Sum_probs=38.1

Q ss_pred             HHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHhhhc
Q psy18096         89 NLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCLIL  130 (131)
Q Consensus        89 N~a~~~~kl~~~~~a~~~~~~al~~dp~~~ka~~rrg~a~~~  130 (131)
                      .+..+|.+.|+|++|+..++++|.+|+.+.-.+...|.++..
T Consensus       212 ~lv~~Yek~G~~eEai~lLe~aL~le~ah~~~ftel~il~~k  253 (449)
T 1b89_A          212 ELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSK  253 (449)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHh
Confidence            466789999999999999999999999999999999988764

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=95.03  E-value=0.069  Score=46.02  Aligned_cols=50  Identities=14%  Similarity=0.157  Sum_probs=42.0

Q ss_pred             HHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHhh
Q psy18096         68 GILASQELLDSLIKERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCL  128 (131)
Q Consensus        68 y~~Ai~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~~~ka~~rrg~a~  128 (131)
                      |.+|+.+|++      +..|..++.|+.++|+|++|++.+.+|     ++.++|...+.|+
T Consensus      1211 YeeA~~~Y~k------A~ny~rLA~tLvkLge~q~AIEaarKA-----~n~~aWkev~~ac 1260 (1630)
T 1xi4_A         1211 YDAAKLLYNN------VSNFGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFAC 1260 (1630)
T ss_pred             HHHHHHHHHh------hhHHHHHHHHHHHhCCHHHHHHHHHHh-----CCHHHHHHHHHHH
Confidence            9999999983      568999999999999999999999998     5667776554443

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=94.82  E-value=0.028  Score=42.53  Aligned_cols=49  Identities=14%  Similarity=0.157  Sum_probs=39.6

Q ss_pred             HHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHh
Q psy18096         68 GILASQELLDSLIKERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKC  127 (131)
Q Consensus        68 y~~Ai~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~~~ka~~rrg~a  127 (131)
                      |++|+.+|+      .+..|.++|.|+.++|+|++|++.+.++     ++++.|-..+.+
T Consensus       138 yeeA~~~Y~------~a~n~~~LA~~L~~Lg~yq~AVea~~KA-----~~~~~Wk~v~~a  186 (449)
T 1b89_A          138 YDAAKLLYN------NVSNFGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFA  186 (449)
T ss_dssp             TTTHHHHHH------HTTCHHHHHHHHHTTTCHHHHHHHHHHH-----TCHHHHHHHHHH
T ss_pred             HHHHHHHHH------HhhhHHHHHHHHHHhccHHHHHHHHHHc-----CCchhHHHHHHH
Confidence            899999887      3357899999999999999999999999     466666554433

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=94.77  E-value=0.055  Score=38.98  Aligned_cols=48  Identities=6%  Similarity=-0.116  Sum_probs=33.2

Q ss_pred             HHHHHHHHHHH--hhh--hhHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCC
Q psy18096         68 GILASQELLDS--LIK--ERINCYNNLAQAQIKLGSLEPALMSLENVLNLDP  115 (131)
Q Consensus        68 y~~Ai~~~~~~--~~~--~~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp  115 (131)
                      +.+|++.+.+-  ..+  ....++.-++.+++++|+.+.|.+.+.+..+.+|
T Consensus       116 ~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~  167 (310)
T 3mv2_B          116 LDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNAIE  167 (310)
T ss_dssp             HHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCc
Confidence            77777777662  222  5667777777777777777777777777777777

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=94.52  E-value=0.13  Score=37.94  Aligned_cols=49  Identities=18%  Similarity=0.035  Sum_probs=27.0

Q ss_pred             HHHHHHHHHH--HhhhhhHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCC
Q psy18096         68 GILASQELLD--SLIKERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNN  117 (131)
Q Consensus        68 y~~Ai~~~~~--~~~~~~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~~  117 (131)
                      +.+|+..+++  .+++ ....|.-+|.++.-.|++++|++.+++|+.++|..
T Consensus       293 ~d~A~~~l~rAl~Ln~-s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~  343 (372)
T 3ly7_A          293 TDESYQAINTGIDLEM-SWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGA  343 (372)
T ss_dssp             HHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSH
T ss_pred             HHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence            4555555555  3433 23444555666666666666666666666666644

>1t11_A Trigger factor, TF; helix-turn-helix, four-helix-bundle, ppiase, chaperone; 2.50A {Vibrio cholerae} SCOP: a.223.1.1 d.241.2.1 d.26.1.1 PDB: 1l1p_A

Probab=93.95  E-value=0.038  Score=41.06  Aligned_cols=45  Identities=16%  Similarity=0.183  Sum_probs=35.7

Q ss_pred             CcchhcccCCCcEEEEEEcCCCCCCCCCCCCCCCCCCceEEEEEeeccccC
Q psy18096          1 MDYVLPLMETGEECQIEITARFGYGDKGEPSKSIPPGAKLYYSLTLHSVLP   51 (131)
Q Consensus         1 ld~~l~~M~~gE~~~v~i~~~~ayG~~G~~~~~ip~~~~~~~~v~l~~~~~   51 (131)
                      +|.+|..|++||+..|+++..-.||..+.      +|.++.|+++++++..
T Consensus       201 fee~L~Gmk~Ge~~~v~v~fp~dy~~~~l------aGk~~~F~V~v~~i~~  245 (392)
T 1t11_A          201 FEDGIVGKTKGMEFVIDVTFPEDYHAENL------KGKAAKFAIKVNKVEA  245 (392)
T ss_dssp             SGGGTTTCCSSCCCCEEEECCTTCSCTTT------SSCEEEECCCEEEEEE
T ss_pred             HHHHhCCCCCCCEEEEEEeCccccccCCC------CCCeEEEEEEEEEEEc
Confidence            47899999999999999974445665442      5789999999998864

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=93.32  E-value=0.31  Score=36.03  Aligned_cols=48  Identities=10%  Similarity=0.066  Sum_probs=38.2

Q ss_pred             hhhHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHhhh
Q psy18096         81 KERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCLI  129 (131)
Q Consensus        81 ~~~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~~~ka~~rrg~a~~  129 (131)
                      +..+.+|.-+|..++..|++++|+..+++|+.++|+ .-+|.-.|+++.
T Consensus       274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~  321 (372)
T 3ly7_A          274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS-WLNYVLLGKVYE  321 (372)
T ss_dssp             TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHH
T ss_pred             CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHH
Confidence            444555556777788889999999999999999974 678778887764

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=92.81  E-value=0.68  Score=37.29  Aligned_cols=45  Identities=20%  Similarity=0.188  Sum_probs=39.8

Q ss_pred             HHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHhhhc
Q psy18096         86 CYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCLIL  130 (131)
Q Consensus        86 ~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~~~ka~~rrg~a~~~  130 (131)
                      ++.-.|.-.+..|+|+-|+..+.+|...-|...+.|++.+++|+.
T Consensus       339 LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~  383 (754)
T 4gns_B          339 LLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIK  383 (754)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHH
Confidence            455556667788999999999999999999999999999999975

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=91.20  E-value=0.57  Score=30.69  Aligned_cols=25  Identities=20%  Similarity=0.165  Sum_probs=22.0

Q ss_pred             HHHHHHHHHHHHhCChHHHHHHHHH
Q psy18096         85 NCYNNLAQAQIKLGSLEPALMSLEN  109 (131)
Q Consensus        85 ~~~~N~a~~~~kl~~~~~a~~~~~~  109 (131)
                      .+.+..|.||++++++.+||...+.
T Consensus       123 Elkykia~C~~~l~~~~~Ai~~Le~  147 (167)
T 3ffl_A          123 EVKYKLAECYTVLKQDKDAIAILDG  147 (167)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHCCHHHHHHHHhc
Confidence            5778899999999999999997654

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=90.30  E-value=1.3  Score=32.50  Aligned_cols=51  Identities=16%  Similarity=0.203  Sum_probs=43.6

Q ss_pred             hhhhhHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHhhh
Q psy18096         79 LIKERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCLI  129 (131)
Q Consensus        79 ~~~~~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~~~ka~~rrg~a~~  129 (131)
                      +......+...++.+++.+|++.+|+..+..++..||-+..+|...-.||.
T Consensus       166 l~~~~~~a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~  216 (388)
T 2ff4_A          166 LVEDKVLAHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYY  216 (388)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            345666777889999999999999999999999999999988877766664

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=89.55  E-value=0.59  Score=37.66  Aligned_cols=42  Identities=26%  Similarity=0.261  Sum_probs=37.1

Q ss_pred             HHHHHHHHHH--HhhhhhHHHHHHHHHHHHHhCChHHHHHHHHH
Q psy18096         68 GILASQELLD--SLIKERINCYNNLAQAQIKLGSLEPALMSLEN  109 (131)
Q Consensus        68 y~~Ai~~~~~--~~~~~~~~~~~N~a~~~~kl~~~~~a~~~~~~  109 (131)
                      |+-|+.+..+  .+.|.....|..+|.||.++|+|+.|+-..+-
T Consensus       353 ~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNS  396 (754)
T 4gns_B          353 YELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINS  396 (754)
T ss_dssp             HHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhc
Confidence            8888888888  77899999999999999999999999976554

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=87.86  E-value=1.5  Score=28.64  Aligned_cols=47  Identities=6%  Similarity=-0.164  Sum_probs=37.2

Q ss_pred             HHHHHHHHHH-----Hh------hhhhHHHHHHHHHHHHHhCChHHHHHHHHHHHhhC
Q psy18096         68 GILASQELLD-----SL------IKERINCYNNLAQAQIKLGSLEPALMSLENVLNLD  114 (131)
Q Consensus        68 y~~Ai~~~~~-----~~------~~~~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~d  114 (131)
                      |+.|+-..+.     +.      ......++..+|.++...++|..|...+.+||++.
T Consensus        36 Y~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~   93 (167)
T 3ffl_A           36 HSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQK   93 (167)
T ss_dssp             HHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHH
Confidence            8888777766     11      12345688899999999999999999999998753

>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1

Probab=87.44  E-value=1.4  Score=25.87  Aligned_cols=29  Identities=14%  Similarity=0.085  Sum_probs=23.7

Q ss_pred             hHHHHHHHHHHHHHhCChHHHHHHHHHHH
Q psy18096         83 RINCYNNLAQAQIKLGSLEPALMSLENVL  111 (131)
Q Consensus        83 ~~~~~~N~a~~~~kl~~~~~a~~~~~~al  111 (131)
                      .+..+..+|-.+++-|.|++||.+-.+|.
T Consensus        14 ~AH~~~RrAe~ll~~gkydeAIech~kAa   42 (97)
T 2crb_A           14 LAHQQSRRADRLLAAGKYEEAISCHRKAT   42 (97)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             hhhHhhhHHHHHHhcCCHHHHHHHHHHHH
Confidence            45567789999999999999998776655

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=85.21  E-value=0.85  Score=32.69  Aligned_cols=49  Identities=14%  Similarity=0.019  Sum_probs=42.4

Q ss_pred             HHHHHHHHHH--Hhhhhh-HHHHHHHHHHHHHh-CChHHHHHHHHHHHhhCCC
Q psy18096         68 GILASQELLD--SLIKER-INCYNNLAQAQIKL-GSLEPALMSLENVLNLDPN  116 (131)
Q Consensus        68 y~~Ai~~~~~--~~~~~~-~~~~~N~a~~~~kl-~~~~~a~~~~~~al~~dp~  116 (131)
                      .++|-.+|++  ++.|.. +..+...|..+... ++++++.+.+++||..+|.
T Consensus       220 ~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~  272 (301)
T 3u64_A          220 MEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPE  272 (301)
T ss_dssp             HHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGG
T ss_pred             HHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCC
Confidence            5677888887  788865 88899999999884 9999999999999998876

>2br9_A 14-3-3E, 14-3-3 protein epsilon; cell regulator protein, 14-3-3, phosphoserine, structural GE consortium, SGC, ywhae; HET: SEP; 1.75A {Homo sapiens} PDB: 3ual_A* 2o98_A* 3m50_A* 3m51_A* 3axy_C*

Probab=81.59  E-value=8.5  Score=26.46  Aligned_cols=45  Identities=16%  Similarity=0.010  Sum_probs=36.6

Q ss_pred             HHHHHHHHHH---HhhhhhHHHHHHHHHHHHH-hCChHHHHHHHHHHHh
Q psy18096         68 GILASQELLD---SLIKERINCYNNLAQAQIK-LGSLEPALMSLENVLN  112 (131)
Q Consensus        68 y~~Ai~~~~~---~~~~~~~~~~~N~a~~~~k-l~~~~~a~~~~~~al~  112 (131)
                      |++|..+-..   ...|....+-+|.+..|.. +++.++|+..+.+|+.
T Consensus       153 Y~~A~~iA~~~L~pthPirLgLaLN~SVF~yEil~~~~~A~~lAk~afd  201 (234)
T 2br9_A          153 YKAASDIAMTELPPTHPIRLGLALNFSVFYYEILNSPDRACRLAKAAFD  201 (234)
T ss_dssp             HHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHccCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            9999988766   4456777788899988886 7999999998887774

>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1

Probab=81.17  E-value=8.4  Score=27.17  Aligned_cols=57  Identities=16%  Similarity=0.089  Sum_probs=46.7

Q ss_pred             HHHHHHHHHH--HhhhhhHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHH--HHHH
Q psy18096         68 GILASQELLD--SLIKERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKA--LQRK  124 (131)
Q Consensus        68 y~~Ai~~~~~--~~~~~~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~~~ka--~~rr  124 (131)
                      ...||..+..  .-.|.++....-+..-+.-.|+|++|...++.+.+++|+....  .||.
T Consensus        13 L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~   73 (273)
T 1zbp_A           13 LQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRH   73 (273)
T ss_dssp             HHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHH
Confidence            5677777766  5568888888888888888999999999999999999998765  4543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	131
d1kt1a3	115	d.26.1.1 (A:139-253) FKBP51, N-terminal domains {M	3e-06
d1pbka_	116	d.26.1.1 (A:) FKBP25 {Human (Homo sapiens) [TaxId:	3e-06
d1fd9a_	204	d.26.1.1 (A:) Macrophage infectivity potentiator p	5e-06
d1q1ca2	117	d.26.1.1 (A:141-257) FKBP52, N-terminal domains {H	4e-05
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	5e-05
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	3e-04
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	6e-04
d1q6ha_	210	d.26.1.1 (A:) Peptidyl-prolyl cis-trans isomerase	5e-05
d1q1ca1	120	d.26.1.1 (A:21-140) FKBP52, N-terminal domains {Hu	1e-04
d1u79a_	125	d.26.1.1 (A:) FKBP13 {Thale cress (Arabidopsis tha	2e-04
d1yata_	113	d.26.1.1 (A:) Calcineurin (FKBP12.6) {Baker's yeas	6e-04
d1jvwa_	160	d.26.1.1 (A:) Macrophage infectivity potentiator p	7e-04
d2pqrb1	124	a.118.8.1 (B:5-128) Mitochondria fission protein F	0.001
d2ppna1	107	d.26.1.1 (A:1-107) FK-506 binding protein (FKBP12)	0.001
d1kt1a2	111	d.26.1.1 (A:28-138) FKBP51, N-terminal domains {Mo	0.002
d1nzna_	122	a.118.8.1 (A:) Mitochondria fission protein Fis1 {	0.002

>d1kt1a3 d.26.1.1 (A:139-253) FKBP51, N-terminal domains {Monkey (Saimiri boliviensis) [TaxId: 27679]} Length = 115

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP51, N-terminal domains
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

 Score = 41.2 bits (96), Expect = 3e-06
 Identities = 18/49 (36%), Positives = 29/49 (59%)

Query: 1   MDYVLPLMETGEECQIEITARFGYGDKGEPSKSIPPGAKLYYSLTLHSV 49
           +D  L  M+  E+C + +  R+G+G+ G+P   I P A+L Y +TL S 
Sbjct: 64  IDKALEKMQREEQCILHLGPRYGFGEAGKPKFGIEPNAELIYEVTLKSF 112

>d1pbka_ d.26.1.1 (A:) FKBP25 {Human (Homo sapiens) [TaxId: 9606]} Length = 116

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP25
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.3 bits (96), Expect = 3e-06
 Identities = 19/49 (38%), Positives = 27/49 (55%)

Query: 1   MDYVLPLMETGEECQIEITARFGYGDKGEPSKSIPPGAKLYYSLTLHSV 49
            D  L  M  GE+ ++EI   + YG KG+P   IPP AKL + + L  +
Sbjct: 67  WDEALLTMSKGEKARLEIEPEWAYGKKGQPDAKIPPNAKLTFEVELVDI 115

>d1fd9a_ d.26.1.1 (A:) Macrophage infectivity potentiator protein (MIP) {Legionella pneumophila [TaxId: 446]} Length = 204

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Macrophage infectivity potentiator protein (MIP)
species: Legionella pneumophila [TaxId: 446]

 Score = 41.8 bits (97), Expect = 5e-06
 Identities = 13/49 (26%), Positives = 19/49 (38%), Gaps = 1/49 (2%)

Query: 1   MDYVLPLMETGEECQIEITARFGYGDKGEPSKSIPPGAKLYYSLTLHSV 49
               L LM  G   +I + +   YG +      I P   L + + L SV
Sbjct: 154 WTEALQLMPAGSTWEIYVPSGLAYGPRSVGGP-IGPNETLIFKIHLISV 201

>d1q1ca2 d.26.1.1 (A:141-257) FKBP52, N-terminal domains {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP52, N-terminal domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.2 bits (88), Expect = 4e-05
 Identities = 15/49 (30%), Positives = 24/49 (48%)

Query: 1   MDYVLPLMETGEECQIEITARFGYGDKGEPSKSIPPGAKLYYSLTLHSV 49
           ++  +  ME GE   + +   + +G  G+    IPP A+L Y L L S 
Sbjct: 64  LERAIQRMEKGEHSIVYLKPSYAFGSVGKEKFQIPPNAELKYELHLKSF 112

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.3 bits (90), Expect = 5e-05
 Identities = 11/42 (26%), Positives = 18/42 (42%)

Query: 87  YNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCL 128
           ++NLA    + G L+ ALM  +  + + P    A       L
Sbjct: 342 HSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTL 383

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.0 bits (84), Expect = 3e-04
 Identities = 5/58 (8%), Positives = 14/58 (24%), Gaps = 3/58 (5%)

Query: 74  ELLDSLIK---ERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCL 128
                L +   +       L+    +   L+ +       +  +P   +A        
Sbjct: 20  RHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVY 77

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.2 bits (82), Expect = 6e-04
 Identities = 14/64 (21%), Positives = 24/64 (37%)

Query: 65  DFGGILASQELLDSLIKERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRK 124
            F   +A+     SL       + NLA    + G ++ A+ +    + L P+   A    
Sbjct: 218 IFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNL 277

Query: 125 AKCL 128
           A  L
Sbjct: 278 ANAL 281

>d1q6ha_ d.26.1.1 (A:) Peptidyl-prolyl cis-trans isomerase FkpA {Escherichia coli [TaxId: 562]} Length = 210

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Peptidyl-prolyl cis-trans isomerase FkpA
species: Escherichia coli [TaxId: 562]

 Score = 38.7 bits (89), Expect = 5e-05
 Identities = 13/49 (26%), Positives = 21/49 (42%), Gaps = 2/49 (4%)

Query: 1   MDYVLPLMETGEECQIEITARFGYGDKGEPSKSIPPGAKLYYSLTLHSV 49
               L  ++ G + ++ I     YG  G P   IPP + L + + L  V
Sbjct: 163 WTEGLKNIKKGGKIKLVIPPELAYGKAGVPG--IPPNSTLVFDVELLDV 209

>d1q1ca1 d.26.1.1 (A:21-140) FKBP52, N-terminal domains {Human (Homo sapiens) [TaxId: 9606]} Length = 120

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP52, N-terminal domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.6 bits (84), Expect = 1e-04
 Identities = 17/49 (34%), Positives = 22/49 (44%), Gaps = 1/49 (2%)

Query: 1   MDYVLPLMETGEECQIEITARFGYGDKGEPSKSIPPGAKLYYSLTLHSV 49
            D  +  M+ GE C I     + YG  G P K IPP A L + + L   
Sbjct: 70  WDIAIATMKVGEVCHITCKPEYAYGSAGSPPK-IPPNATLVFEVELFEF 117

>d1u79a_ d.26.1.1 (A:) FKBP13 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 125

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP13
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 36.8 bits (84), Expect = 2e-04
 Identities = 14/46 (30%), Positives = 21/46 (45%), Gaps = 4/46 (8%)

Query: 5   LPLMETGEECQIEITARFGYGDKGEPSKS----IPPGAKLYYSLTL 46
           +P M TG +  + I     YGD+G   K     IPP + L + +  
Sbjct: 76  IPPMLTGGKRTLRIPPELAYGDRGAGCKGGSCLIPPASVLLFDIEY 121

>d1yata_ d.26.1.1 (A:) Calcineurin (FKBP12.6) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 113

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Calcineurin (FKBP12.6)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 35.1 bits (80), Expect = 6e-04
 Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 1/49 (2%)

Query: 1   MDYVLPLMETGEECQIEITARFGYGDKGEPSKSIPPGAKLYYSLTLHSV 49
            D  +P +  GE+ ++ I   + YG +G P   IPP + L + + L  V
Sbjct: 65  WDVGIPKLSVGEKARLTIPGPYAYGPRGFPGL-IPPNSTLVFDVELLKV 112

>d1jvwa_ d.26.1.1 (A:) Macrophage infectivity potentiator protein (MIP) {Trypanosoma cruzi [TaxId: 5693]} Length = 160

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Macrophage infectivity potentiator protein (MIP)
species: Trypanosoma cruzi [TaxId: 5693]

 Score = 35.2 bits (80), Expect = 7e-04
 Identities = 14/51 (27%), Positives = 21/51 (41%), Gaps = 1/51 (1%)

Query: 1   MDYVLPLMETGEECQIEITARFGYGDKGEPSKSIPPGAKLYYSLTLHSVLP 51
               L LM  G+  ++ I     YG  G     IPP + L + + L S+  
Sbjct: 91  WTEALQLMREGDRWRLFIPYDLAYGVTGGGGM-IPPYSPLEFDVELISIKD 140

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 124

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 34.3 bits (79), Expect = 0.001
 Identities = 10/55 (18%), Positives = 18/55 (32%)

Query: 68  GILASQELLDSLIKERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQ 122
           G+    ++       R  C   L     KLG    A   ++ +   + NN +   
Sbjct: 57  GVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA 111

>d2ppna1 d.26.1.1 (A:1-107) FK-506 binding protein (FKBP12), an immunophilin {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FK-506 binding protein (FKBP12), an immunophilin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.0 bits (77), Expect = 0.001
 Identities = 13/49 (26%), Positives = 23/49 (46%), Gaps = 1/49 (2%)

Query: 1   MDYVLPLMETGEECQIEITARFGYGDKGEPSKSIPPGAKLYYSLTLHSV 49
            +  +  M  G+  ++ I+  + YG  G P   IPP A L + + L  +
Sbjct: 59  WEEGVAQMSVGQRAKLTISPDYAYGATGHPGI-IPPHATLVFDVELLKL 106

>d1kt1a2 d.26.1.1 (A:28-138) FKBP51, N-terminal domains {Monkey (Saimiri boliviensis) [TaxId: 27679]} Length = 111

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP51, N-terminal domains
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

 Score = 33.6 bits (76), Expect = 0.002
 Identities = 14/49 (28%), Positives = 21/49 (42%), Gaps = 1/49 (2%)

Query: 1   MDYVLPLMETGEECQIEITARFGYGDKGEPSKSIPPGAKLYYSLTLHSV 49
            D  +  M+ GE C +     + YG  G   K IP  A L++ + L   
Sbjct: 63  WDIGVATMKKGEICHLLCKPEYAYGATGSLPK-IPSNATLFFEVELLDF 110

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} Length = 122

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.5 bits (76), Expect = 0.002
 Identities = 11/44 (25%), Positives = 20/44 (45%)

Query: 82  ERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKA 125
           E+ +    LA    +L   E AL  +  +L  +P N +A + + 
Sbjct: 70  EQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELER 113

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	131
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	99.68
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	99.68
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	99.62
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	99.54
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	99.53
d1kt1a3	115	FKBP51, N-terminal domains {Monkey (Saimiri bolivi	99.49
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.46
d1q1ca2	117	FKBP52, N-terminal domains {Human (Homo sapiens) [	99.42
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	99.4
d1r9ha_	118	FKB-6, N-terminal domain {Caenorhabditis elegans [	99.36
d1pbka_	116	FKBP25 {Human (Homo sapiens) [TaxId: 9606]}	99.34
d1kt1a2	111	FKBP51, N-terminal domains {Monkey (Saimiri bolivi	99.34
d2ppna1	107	FK-506 binding protein (FKBP12), an immunophilin {	99.32
d1yata_	113	Calcineurin (FKBP12.6) {Baker's yeast (Saccharomyc	99.31
d1jvwa_	160	Macrophage infectivity potentiator protein (MIP) {	99.29
d1q1ca1	120	FKBP52, N-terminal domains {Human (Homo sapiens) [	99.29
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	99.29
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.29
d1fd9a_	204	Macrophage infectivity potentiator protein (MIP) {	99.26
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	99.23
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.22
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.18
d1q6ha_	210	Peptidyl-prolyl cis-trans isomerase FkpA {Escheric	99.13
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	99.12
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.06
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	99.03
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	99.01
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	99.01
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	98.99
d1u79a_	125	FKBP13 {Thale cress (Arabidopsis thaliana) [TaxId:	98.98
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	98.97
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	98.97
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	98.88
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	98.86
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	98.86
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	98.85
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	98.85
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	98.84
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	98.83
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	98.83
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	98.82
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	98.65
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	98.63
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	98.59
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	98.58
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	98.55
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	98.41
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	98.35
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	98.27
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	98.14
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	98.09
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	98.05
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	97.93
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	97.84
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	97.67
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	97.59
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	97.46
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	97.31
d1hxva_	85	Trigger factor PPIase domain {Mycoplasma genitaliu	97.24
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	96.89
d1ix5a_	151	Archaeal FKBP {Archaeon Methanococcus thermolithot	96.84
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	96.54
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	96.01
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	95.86
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	95.35
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	93.08
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	92.28
d1l1pa_	106	Trigger factor PPIase domain {Escherichia coli [Ta	92.24
d1t11a3	113	Trigger factor PPIase domain {Vibrio cholerae [Tax	92.07
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	90.85
d2crba1	83	Nuclear receptor binding factor 2, NRBF2, N-termin	89.98
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	82.78
d2o02a1	230	zeta isoform {Cow (Bos taurus) [TaxId: 9913]}	81.49

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=99.68  E-value=1.5e-16  Score=104.07  Aligned_cols=78  Identities=22%  Similarity=0.238  Sum_probs=67.8

Q ss_pred             ccCcCcchhhhHHHH---------------HHHHHHHHHH-----------------HhhhhhHHHHHHHHHHHHHhCCh
Q psy18096         53 FDLAELPVEKRLDFG---------------GILASQELLD-----------------SLIKERINCYNNLAQAQIKLGSL  100 (131)
Q Consensus        53 ~~~~~~~~~e~~~~~---------------y~~Ai~~~~~-----------------~~~~~~~~~~~N~a~~~~kl~~~  100 (131)
                      ++.|.|+..|+++.+               |.+|++.|++                 ...+....+|+|+|.||.++|+|
T Consensus         1 ~e~~~m~~~E~~~~a~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~   80 (168)
T d1kt1a1           1 KESWEMDTKEKLEQAAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREY   80 (168)
T ss_dssp             CCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCH
T ss_pred             CCcccCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhc
Confidence            367999998887654               7778777766                 34566788999999999999999


Q ss_pred             HHHHHHHHHHHhhCCCCHHHHHHHHHhhhc
Q psy18096        101 EPALMSLENVLNLDPNNIKALQRKAKCLIL  130 (131)
Q Consensus       101 ~~a~~~~~~al~~dp~~~ka~~rrg~a~~~  130 (131)
                      ++|+.+|+++|.+||+|+++||++|.++..
T Consensus        81 ~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~  110 (168)
T d1kt1a1          81 TKAVECCDKALGLDSANEKGLYRRGEAQLL  110 (168)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             ccchhhhhhhhhcccchHHHHHHHHHHHHH
Confidence            999999999999999999999999999864

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.68  E-value=2.1e-16  Score=101.96  Aligned_cols=78  Identities=22%  Similarity=0.183  Sum_probs=67.7

Q ss_pred             ccCcCcchhhhHHHH---------------HHHHHHHHHH------------------HhhhhhHHHHHHHHHHHHHhCC
Q psy18096         53 FDLAELPVEKRLDFG---------------GILASQELLD------------------SLIKERINCYNNLAQAQIKLGS   99 (131)
Q Consensus        53 ~~~~~~~~~e~~~~~---------------y~~Ai~~~~~------------------~~~~~~~~~~~N~a~~~~kl~~   99 (131)
                      ++.|.++.+++++.+               |.+|+..|++                  ...+....+|+|+|.||+++++
T Consensus         3 ~~~~~~~~~e~~~~a~~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~   82 (153)
T d2fbna1           3 KSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKD   82 (153)
T ss_dssp             CSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             cchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHHhcc
Confidence            467899998887754               8888888877                  2345567899999999999999


Q ss_pred             hHHHHHHHHHHHhhCCCCHHHHHHHHHhhhc
Q psy18096        100 LEPALMSLENVLNLDPNNIKALQRKAKCLIL  130 (131)
Q Consensus       100 ~~~a~~~~~~al~~dp~~~ka~~rrg~a~~~  130 (131)
                      |++|+.+|++||+++|+|++|||++|.++..
T Consensus        83 ~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~  113 (153)
T d2fbna1          83 YPKAIDHASKVLKIDKNNVKALYKLGVANMY  113 (153)
T ss_dssp             HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred             cchhhhhhhccccccchhhhhhHHhHHHHHH
Confidence            9999999999999999999999999999863

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=2e-15  Score=98.90  Aligned_cols=76  Identities=26%  Similarity=0.278  Sum_probs=66.8

Q ss_pred             CcCcchhhhHHHH---------------HHHHHHHHHH-----------------HhhhhhHHHHHHHHHHHHHhCChHH
Q psy18096         55 LAELPVEKRLDFG---------------GILASQELLD-----------------SLIKERINCYNNLAQAQIKLGSLEP  102 (131)
Q Consensus        55 ~~~~~~~e~~~~~---------------y~~Ai~~~~~-----------------~~~~~~~~~~~N~a~~~~kl~~~~~  102 (131)
                      +|.|+.+++++.+               |.+|+..|++                 ...+....+|+|+|.||+++|+|++
T Consensus         1 ~~~~~~~ek~~~a~~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~   80 (170)
T d1p5qa1           1 SWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSA   80 (170)
T ss_dssp             GGGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhccc
Confidence            4889998887755               7888888876                 2356778899999999999999999


Q ss_pred             HHHHHHHHHhhCCCCHHHHHHHHHhhhc
Q psy18096        103 ALMSLENVLNLDPNNIKALQRKAKCLIL  130 (131)
Q Consensus       103 a~~~~~~al~~dp~~~ka~~rrg~a~~~  130 (131)
                      |+.+|++||.++|+|+++|+++|.++..
T Consensus        81 A~~~~~~al~~~p~~~~a~~~~g~~~~~  108 (170)
T d1p5qa1          81 AIESCNKALELDSNNEKGLSRRGEAHLA  108 (170)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             ccchhhhhhhccccchhhhHHHHHHHHH
Confidence            9999999999999999999999999864

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.54  E-value=3.9e-14  Score=92.19  Aligned_cols=53  Identities=28%  Similarity=0.395  Sum_probs=50.0

Q ss_pred             HhhhhhHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHhhhc
Q psy18096         78 SLIKERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCLIL  130 (131)
Q Consensus        78 ~~~~~~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~~~ka~~rrg~a~~~  130 (131)
                      .+.|....+++|+|.||.++|+|++|+.+|++||+++|+++++|+++|.+|..
T Consensus        71 ~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~  123 (169)
T d1ihga1          71 KLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQG  123 (169)
T ss_dssp             GGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH
T ss_pred             HhChhhHHHHHHHHHHHHhhcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHH
Confidence            45788999999999999999999999999999999999999999999999864

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.53  E-value=2.1e-14  Score=94.68  Aligned_cols=63  Identities=22%  Similarity=0.120  Sum_probs=61.1

Q ss_pred             HHHHHHHHHH--HhhhhhHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHhhhc
Q psy18096         68 GILASQELLD--SLIKERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCLIL  130 (131)
Q Consensus        68 y~~Ai~~~~~--~~~~~~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~~~ka~~rrg~a~~~  130 (131)
                      |.+||..|++  +++|.++.+|+|+|.||+++|+|++|+.+|++||+++|+++++|+++|.++..
T Consensus        20 ~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~~~~~   84 (201)
T d2c2la1          20 YPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLE   84 (201)
T ss_dssp             HHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence            9999999999  88999999999999999999999999999999999999999999999999864

>d1kt1a3 d.26.1.1 (A:139-253) FKBP51, N-terminal domains {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP51, N-terminal domains
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=99.49  E-value=9.3e-15  Score=90.21  Aligned_cols=51  Identities=35%  Similarity=0.712  Sum_probs=47.8

Q ss_pred             CcchhcccCCCcEEEEEEcCCCCCCCCCCCCCCCCCCceEEEEEeeccccC
Q psy18096          1 MDYVLPLMETGEECQIEITARFGYGDKGEPSKSIPPGAKLYYSLTLHSVLP   51 (131)
Q Consensus         1 ld~~l~~M~~gE~~~v~i~~~~ayG~~G~~~~~ip~~~~~~~~v~l~~~~~   51 (131)
                      +|.+|.+|++||+++|+|+|++|||+.|.+...|||++++.|+++|.+|.+
T Consensus        64 ~~~~l~~M~~Ge~~~v~ip~~~ayG~~g~~~~~Ipp~a~l~f~ieLl~~~k  114 (115)
T d1kt1a3          64 IDKALEKMQREEQCILHLGPRYGFGEAGKPKFGIEPNAELIYEVTLKSFEK  114 (115)
T ss_dssp             HHHHHTTCCTTCEEEEEECGGGSSCTTCBTTTTBCTTCCEEEEEEEEEEEC
T ss_pred             hHhhhccchhhceeEEEeCHHHCcCCCCCCCCCcCcCCeEEEEEEEEEEEe
Confidence            478999999999999999999999999987678999999999999999976

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=2.8e-13  Score=83.35  Aligned_cols=63  Identities=25%  Similarity=0.136  Sum_probs=60.5

Q ss_pred             HHHHHHHHHH--HhhhhhHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHhhhc
Q psy18096         68 GILASQELLD--SLIKERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCLIL  130 (131)
Q Consensus        68 y~~Ai~~~~~--~~~~~~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~~~ka~~rrg~a~~~  130 (131)
                      |++||.+|++  +++|..+.+|.|+|.||.++|+|.+|+.+|+++++++|+++++|+++|.++..
T Consensus        19 ~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~   83 (117)
T d1elwa_          19 IDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEF   83 (117)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHH
Confidence            9999999999  88999999999999999999999999999999999999999999999998864

>d1q1ca2 d.26.1.1 (A:141-257) FKBP52, N-terminal domains {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP52, N-terminal domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.42  E-value=3.4e-14  Score=87.91  Aligned_cols=53  Identities=28%  Similarity=0.513  Sum_probs=49.0

Q ss_pred             CcchhcccCCCcEEEEEEcCCCCCCCCCCCCCCCCCCceEEEEEeeccccCCc
Q psy18096          1 MDYVLPLMETGEECQIEITARFGYGDKGEPSKSIPPGAKLYYSLTLHSVLPDF   53 (131)
Q Consensus         1 ld~~l~~M~~gE~~~v~i~~~~ayG~~G~~~~~ip~~~~~~~~v~l~~~~~~~   53 (131)
                      |+.||..|++||+++|+|+|++|||..|.+...|||++++.|+++|++|.+.+
T Consensus        64 l~~~l~~M~~Ge~~~i~ip~~~ayG~~g~~~~~Ipp~s~l~f~veL~~~~~~k  116 (117)
T d1q1ca2          64 LERAIQRMEKGEHSIVYLKPSYAFGSVGKEKFQIPPNAELKYELHLKSFEKAK  116 (117)
T ss_dssp             HHHHHTTCCTTCEEEEEECGGGTTTTTCBGGGTBCTTCCEEEEEEEEEEECCC
T ss_pred             HHHhhhcchhhCeEEEEECHHHhCcccCCCCCccCcCCeEEEEEEEEEEEeCC
Confidence            47899999999999999999999999998766899999999999999998764

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.40  E-value=9.4e-13  Score=84.63  Aligned_cols=63  Identities=21%  Similarity=0.116  Sum_probs=61.0

Q ss_pred             HHHHHHHHHH--HhhhhhHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHhhhc
Q psy18096         68 GILASQELLD--SLIKERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCLIL  130 (131)
Q Consensus        68 y~~Ai~~~~~--~~~~~~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~~~ka~~rrg~a~~~  130 (131)
                      |.+|+.+|++  +++|....+|.|+|.|++++|+|++|+.+|+++|+++|++.++|+++|.++..
T Consensus        26 y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~   90 (159)
T d1a17a_          26 YENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMA   90 (159)
T ss_dssp             HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHH
Confidence            9999999999  88999999999999999999999999999999999999999999999999864

>d1r9ha_ d.26.1.1 (A:) FKB-6, N-terminal domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKB-6, N-terminal domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.36  E-value=1.6e-13  Score=85.02  Aligned_cols=49  Identities=35%  Similarity=0.644  Sum_probs=45.6

Q ss_pred             CcchhcccCCCcEEEEEEcCCCCCCCCCCCCCCCCCCceEEEEEeecccc
Q psy18096          1 MDYVLPLMETGEECQIEITARFGYGDKGEPSKSIPPGAKLYYSLTLHSVL   50 (131)
Q Consensus         1 ld~~l~~M~~gE~~~v~i~~~~ayG~~G~~~~~ip~~~~~~~~v~l~~~~   50 (131)
                      +|.+|..|++||+++|.++|++|||+.|.+ +.|||++++.|+++|.+|.
T Consensus        69 ~~~~l~~M~~Ge~~~~~ipp~laYG~~g~~-~~IPp~s~l~f~IeLl~f~  117 (118)
T d1r9ha_          69 WDLGVATMTKGEVAEFTIRSDYGYGDAGSP-PKIPGGATLIFEVELFEWS  117 (118)
T ss_dssp             HHHHHTTCCBTCEEEEEECGGGTTTTTCBT-TTBCTTCCEEEEEEEEEEE
T ss_pred             eeeeeeeecCCceEEEEECHHHhCCcCCCC-CccCcCCcEEEEEEEEEEe
Confidence            478999999999999999999999999974 6899999999999999985

>d1pbka_ d.26.1.1 (A:) FKBP25 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP25
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.34  E-value=2.1e-13  Score=84.21  Aligned_cols=50  Identities=38%  Similarity=0.698  Sum_probs=46.3

Q ss_pred             CcchhcccCCCcEEEEEEcCCCCCCCCCCCCCCCCCCceEEEEEeecccc
Q psy18096          1 MDYVLPLMETGEECQIEITARFGYGDKGEPSKSIPPGAKLYYSLTLHSVL   50 (131)
Q Consensus         1 ld~~l~~M~~gE~~~v~i~~~~ayG~~G~~~~~ip~~~~~~~~v~l~~~~   50 (131)
                      ++.+|..|++||+++|+|+|++|||+.|.+...|||++++.|+|+|++++
T Consensus        67 l~~~v~~M~~Ge~~~~~ip~~~ayG~~g~~~~~Ipp~s~L~feieLl~ve  116 (116)
T d1pbka_          67 WDEALLTMSKGEKARLEIEPEWAYGKKGQPDAKIPPNAKLTFEVELVDID  116 (116)
T ss_dssp             HHHHHTTCCTTCEEEEEECGGGTTTTTCBGGGTBCTTCCEEEEEEEEEEC
T ss_pred             hheechhhcCCcEEEEEECHHHhCCccCCCCCCcCcCCeEEEEEEEEEEC
Confidence            47899999999999999999999999998767899999999999999874

>d1kt1a2 d.26.1.1 (A:28-138) FKBP51, N-terminal domains {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP51, N-terminal domains
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=99.34  E-value=2.4e-13  Score=83.36  Aligned_cols=49  Identities=27%  Similarity=0.554  Sum_probs=41.2

Q ss_pred             CcchhcccCCCcEEEEEEcCCCCCCCCCCCCCCCCCCceEEEEEeecccc
Q psy18096          1 MDYVLPLMETGEECQIEITARFGYGDKGEPSKSIPPGAKLYYSLTLHSVL   50 (131)
Q Consensus         1 ld~~l~~M~~gE~~~v~i~~~~ayG~~G~~~~~ip~~~~~~~~v~l~~~~   50 (131)
                      ++.+|..|++||+++|+|+|++|||+.|.+ +.|||++++.|+++|.++.
T Consensus        63 ~~~~l~~M~~Ge~~~~~ip~~layG~~g~~-~~IPp~s~lif~ieLl~ik  111 (111)
T d1kt1a2          63 WDIGVATMKKGEICHLLCKPEYAYGATGSL-PKIPSNATLFFEVELLDFK  111 (111)
T ss_dssp             HHHSTTTCCTTCCEEEEC----CCCTTTCT-TTSCTTCCCEEEEEEEEEE
T ss_pred             eeeeehhccCCcEEEEEECHHHhCCCCCCC-CcCCcCCeEEEEEEEEEEC
Confidence            478999999999999999999999999974 6899999999999999873

>d2ppna1 d.26.1.1 (A:1-107) FK-506 binding protein (FKBP12), an immunophilin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FK-506 binding protein (FKBP12), an immunophilin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.32  E-value=4.5e-13  Score=81.55  Aligned_cols=49  Identities=27%  Similarity=0.564  Sum_probs=44.9

Q ss_pred             CcchhcccCCCcEEEEEEcCCCCCCCCCCCCCCCCCCceEEEEEeecccc
Q psy18096          1 MDYVLPLMETGEECQIEITARFGYGDKGEPSKSIPPGAKLYYSLTLHSVL   50 (131)
Q Consensus         1 ld~~l~~M~~gE~~~v~i~~~~ayG~~G~~~~~ip~~~~~~~~v~l~~~~   50 (131)
                      ++.+|..|++||+++|+|+|++|||+.|.+ +.|||++++.|+++|.+++
T Consensus        59 ~~~~l~~M~~Ge~~~~~ip~~laYG~~g~~-~~IPp~s~lif~ieL~~vk  107 (107)
T d2ppna1          59 WEEGVAQMSVGQRAKLTISPDYAYGATGHP-GIIPPHATLVFDVELLKLE  107 (107)
T ss_dssp             HHHHHTTCCTTCEEEEEECGGGTTTTTCBT-TTBCTTCCEEEEEEEEEEC
T ss_pred             ehhhhcCccCCCEEEEEECHHHhCCCCCCC-CCCCcCCeEEEEEEEEEEC
Confidence            468999999999999999999999999974 6799999999999999863

>d1yata_ d.26.1.1 (A:) Calcineurin (FKBP12.6) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Calcineurin (FKBP12.6)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.31  E-value=5.9e-13  Score=81.76  Aligned_cols=49  Identities=31%  Similarity=0.634  Sum_probs=44.9

Q ss_pred             CcchhcccCCCcEEEEEEcCCCCCCCCCCCCCCCCCCceEEEEEeecccc
Q psy18096          1 MDYVLPLMETGEECQIEITARFGYGDKGEPSKSIPPGAKLYYSLTLHSVL   50 (131)
Q Consensus         1 ld~~l~~M~~gE~~~v~i~~~~ayG~~G~~~~~ip~~~~~~~~v~l~~~~   50 (131)
                      ++.+|..|++||+++|.++|.+|||+.|.+ +.|||++++.|+++|.+++
T Consensus        65 ~~~~l~~M~~G~~~~~~iP~~laYG~~g~~-~~IP~~s~Lif~ieLl~I~  113 (113)
T d1yata_          65 WDVGIPKLSVGEKARLTIPGPYAYGPRGFP-GLIPPNSTLVFDVELLKVN  113 (113)
T ss_dssp             HHHHGGGCCTTCEEEEEECGGGTTTTTCBT-TTBCTTCCEEEEEEEEEEC
T ss_pred             hhhhcccccCCCEEEEEechHHeecCcCCC-CccCcCCeEEEEEEEEEeC
Confidence            468999999999999999999999999974 6799999999999998863

>d1jvwa_ d.26.1.1 (A:) Macrophage infectivity potentiator protein (MIP) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Macrophage infectivity potentiator protein (MIP)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=99.29  E-value=1.1e-12  Score=85.11  Aligned_cols=57  Identities=25%  Similarity=0.311  Sum_probs=49.8

Q ss_pred             CcchhcccCCCcEEEEEEcCCCCCCCCCCCCCCCCCCceEEEEEeeccccCCccCcCc
Q psy18096          1 MDYVLPLMETGEECQIEITARFGYGDKGEPSKSIPPGAKLYYSLTLHSVLPDFDLAEL   58 (131)
Q Consensus         1 ld~~l~~M~~gE~~~v~i~~~~ayG~~G~~~~~ip~~~~~~~~v~l~~~~~~~~~~~~   58 (131)
                      ++.+|..|++||+++|+|+|.+|||..|.+ +.|||++++.|+++|.++.+.......
T Consensus        91 ~~e~l~~M~~Ge~~~v~iPp~laYG~~g~~-~~IPp~s~LifeIeLl~i~~~~~~~~~  147 (160)
T d1jvwa_          91 WTEALQLMREGDRWRLFIPYDLAYGVTGGG-GMIPPYSPLEFDVELISIKDGGKGRTA  147 (160)
T ss_dssp             HHHHHTTCCTTCEEEEEECGGGTTTTTCSS-SSSCTTCCEEEEEEEEEEGGGCCSCBH
T ss_pred             HHHHhcCccccceeEEEeCHHHCcCCCCCC-CCcCcCCcEEEEEEEEEEecCCCCCCh
Confidence            468999999999999999999999999964 679999999999999999766554443

>d1q1ca1 d.26.1.1 (A:21-140) FKBP52, N-terminal domains {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP52, N-terminal domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.29  E-value=7.8e-13  Score=82.06  Aligned_cols=49  Identities=33%  Similarity=0.701  Sum_probs=45.6

Q ss_pred             CcchhcccCCCcEEEEEEcCCCCCCCCCCCCCCCCCCceEEEEEeecccc
Q psy18096          1 MDYVLPLMETGEECQIEITARFGYGDKGEPSKSIPPGAKLYYSLTLHSVL   50 (131)
Q Consensus         1 ld~~l~~M~~gE~~~v~i~~~~ayG~~G~~~~~ip~~~~~~~~v~l~~~~   50 (131)
                      ++.+|..|++||+++|.|+|++|||+.|.+ +.|||++++.|+++|.++.
T Consensus        70 ~~~~l~~M~~Ge~~~~~ip~~laYG~~g~~-~~IPp~s~LifeIeLl~v~  118 (120)
T d1q1ca1          70 WDIAIATMKVGEVCHITCKPEYAYGSAGSP-PKIPPNATLVFEVELFEFK  118 (120)
T ss_dssp             HHHHHTTCCTTCEEEEEECGGGTTTTTCBT-TTBCTTCCEEEEEEEEEEE
T ss_pred             eeeeeccccCCcEEEEEECHHHhCCCcCCC-CCCCcCCcEEEEEEEEEEe
Confidence            478999999999999999999999999974 7899999999999999985

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.29  E-value=1.2e-11  Score=73.30  Aligned_cols=71  Identities=20%  Similarity=0.270  Sum_probs=58.8

Q ss_pred             cchhhhHHHH--------HHHHHHHHHH--Hh-------hhhhHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHH
Q psy18096         58 LPVEKRLDFG--------GILASQELLD--SL-------IKERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKA  120 (131)
Q Consensus        58 ~~~~e~~~~~--------y~~Ai~~~~~--~~-------~~~~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~~~ka  120 (131)
                      |++++..+.|        |.+|+..|++  ++       .+....++.|+|.|+.++|+|++|+..++++|++||++..|
T Consensus         3 Lsaddc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a   82 (95)
T d1tjca_           3 LTAEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRA   82 (95)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             ccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHH
Confidence            4556666666        8888888887  22       23457899999999999999999999999999999999999


Q ss_pred             HHHHHHhh
Q psy18096        121 LQRKAKCL  128 (131)
Q Consensus       121 ~~rrg~a~  128 (131)
                      +++.+...
T Consensus        83 ~~Nl~~~~   90 (95)
T d1tjca_          83 NGNLKYFE   90 (95)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99987643

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.29  E-value=2.2e-12  Score=80.34  Aligned_cols=61  Identities=15%  Similarity=0.074  Sum_probs=54.8

Q ss_pred             HHHHHHHHHH--HhhhhhHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHhh
Q psy18096         68 GILASQELLD--SLIKERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCL  128 (131)
Q Consensus        68 y~~Ai~~~~~--~~~~~~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~~~ka~~rrg~a~  128 (131)
                      |.+|+.+|++  +++|....++.|+|.||.++|+|++|+.+|+++|+++|++..+|+..|++|
T Consensus        20 y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~   82 (128)
T d1elra_          20 FDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAY   82 (128)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence            9999999999  889999999999999999999999999999999999999876555555444

>d1fd9a_ d.26.1.1 (A:) Macrophage infectivity potentiator protein (MIP) {Legionella pneumophila [TaxId: 446]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Macrophage infectivity potentiator protein (MIP)
species: Legionella pneumophila [TaxId: 446]

Probab=99.26  E-value=1.7e-12  Score=87.32  Aligned_cols=50  Identities=26%  Similarity=0.414  Sum_probs=46.2

Q ss_pred             CcchhcccCCCcEEEEEEcCCCCCCCCCCCCCCCCCCceEEEEEeeccccC
Q psy18096          1 MDYVLPLMETGEECQIEITARFGYGDKGEPSKSIPPGAKLYYSLTLHSVLP   51 (131)
Q Consensus         1 ld~~l~~M~~gE~~~v~i~~~~ayG~~G~~~~~ip~~~~~~~~v~l~~~~~   51 (131)
                      ++.+|..|++|++++|+|+|.+|||+.|.+ +.|||++++.|+|+|.++.+
T Consensus       154 ~~e~l~~m~~G~~~~~~iP~~laYG~~g~~-~~Ipp~s~l~feveL~~i~k  203 (204)
T d1fd9a_         154 WTEALQLMPAGSTWEIYVPSGLAYGPRSVG-GPIGPNETLIFKIHLISVKK  203 (204)
T ss_dssp             HHHHHTTCCTTCEEEEEECGGGTTTTCCCS-SSCCTTCCEEEEEEEEEEEC
T ss_pred             HHHHhcCCCCCCEEEEEEChHHCcCCCCCC-CCcCcCCcEEEEEEEEEEEc
Confidence            367999999999999999999999999974 68999999999999999875

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.23  E-value=1.4e-11  Score=81.69  Aligned_cols=62  Identities=11%  Similarity=-0.029  Sum_probs=56.6

Q ss_pred             HHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHhhhc
Q psy18096         68 GILASQELLDSLIKERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCLIL  130 (131)
Q Consensus        68 y~~Ai~~~~~~~~~~~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~~~ka~~rrg~a~~~  130 (131)
                      |.+|++.|++ +.+.++.+++|+|.||.++|+|++|+.+|++||++||+++.+|+.+|.++..
T Consensus        21 ~~~Al~~~~~-i~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~~~   82 (192)
T d1hh8a_          21 WKGALDAFSA-VQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQ   82 (192)
T ss_dssp             HHHHHHHHHT-SSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHh-cCCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhhhhhHHHHHHHHHh
Confidence            9999999885 4556778899999999999999999999999999999999999999999853

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.22  E-value=7.3e-11  Score=71.69  Aligned_cols=63  Identities=19%  Similarity=0.107  Sum_probs=60.4

Q ss_pred             HHHHHHHHHH--HhhhhhHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHhhhc
Q psy18096         68 GILASQELLD--SLIKERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCLIL  130 (131)
Q Consensus        68 y~~Ai~~~~~--~~~~~~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~~~ka~~rrg~a~~~  130 (131)
                      |.+|+..|++  ...|..+.+|.++|.++.+++++++|+.+++++|+++|++..+|+.+|.++..
T Consensus        32 ~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~   96 (112)
T d1hxia_          32 LAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN   96 (112)
T ss_dssp             HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             hHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHHH
Confidence            9999999999  88899999999999999999999999999999999999999999999998863

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.18  E-value=6.8e-12  Score=85.08  Aligned_cols=63  Identities=21%  Similarity=0.305  Sum_probs=60.5

Q ss_pred             HHHHHHHHHH--HhhhhhHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHhhhc
Q psy18096         68 GILASQELLD--SLIKERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCLIL  130 (131)
Q Consensus        68 y~~Ai~~~~~--~~~~~~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~~~ka~~rrg~a~~~  130 (131)
                      |++|+..|++  +++|..+.+|+|+|.||.++|++++|+.+++++++++|++..+++++|.++..
T Consensus        53 ~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~  117 (259)
T d1xnfa_          53 RALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYY  117 (259)
T ss_dssp             HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHHhhhhhhHHHHHHHHHH
Confidence            9999999999  88999999999999999999999999999999999999999999999998864

>d1q6ha_ d.26.1.1 (A:) Peptidyl-prolyl cis-trans isomerase FkpA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Peptidyl-prolyl cis-trans isomerase FkpA
species: Escherichia coli [TaxId: 562]

Probab=99.13  E-value=1.4e-11  Score=83.10  Aligned_cols=47  Identities=26%  Similarity=0.489  Sum_probs=43.5

Q ss_pred             CcchhcccCCCcEEEEEEcCCCCCCCCCCCCCCCCCCceEEEEEeeccc
Q psy18096          1 MDYVLPLMETGEECQIEITARFGYGDKGEPSKSIPPGAKLYYSLTLHSV   49 (131)
Q Consensus         1 ld~~l~~M~~gE~~~v~i~~~~ayG~~G~~~~~ip~~~~~~~~v~l~~~   49 (131)
                      ++.+|..|++|++++|+|+|.+|||+.|.  +.|||++++.|+|+|.++
T Consensus       163 ~~e~l~~m~~G~k~~~~iP~~laYG~~g~--~~Ippns~Lvfevel~~i  209 (210)
T d1q6ha_         163 WTEGLKNIKKGGKIKLVIPPELAYGKAGV--PGIPPNSTLVFDVELLDV  209 (210)
T ss_dssp             HHHHGGGSCTTCEEEEEECGGGTTTTTCB--TTBCTTCCEEEEEEEEEE
T ss_pred             HHHHHhhccCCCEEEEEECHHHCcCCCCC--CCCCcCCcEEEEEEEEEE
Confidence            36799999999999999999999999996  459999999999999986

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.12  E-value=1e-10  Score=74.20  Aligned_cols=62  Identities=13%  Similarity=0.092  Sum_probs=57.5

Q ss_pred             HHHHHHHHHH--HhhhhhHHHHHHHHHHHHHh----------CChHHHHHHHHHHHhhCCCCHHHHHHHHHhhh
Q psy18096         68 GILASQELLD--SLIKERINCYNNLAQAQIKL----------GSLEPALMSLENVLNLDPNNIKALQRKAKCLI  129 (131)
Q Consensus        68 y~~Ai~~~~~--~~~~~~~~~~~N~a~~~~kl----------~~~~~a~~~~~~al~~dp~~~ka~~rrg~a~~  129 (131)
                      |++|+..|++  +++|.++.++.|+|.++..+          +.+++|+..+++||++||++..+|+++|.+|.
T Consensus        13 fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~~y~   86 (145)
T d1zu2a1          13 FEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYT   86 (145)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchhhHHHhhHHHHHH
Confidence            8999999999  89999999999999999865          45689999999999999999999999999885

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.06  E-value=5.4e-10  Score=68.14  Aligned_cols=62  Identities=19%  Similarity=0.040  Sum_probs=58.5

Q ss_pred             HHHHHHHHHH--HhhhhhHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHhhh
Q psy18096         68 GILASQELLD--SLIKERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCLI  129 (131)
Q Consensus        68 y~~Ai~~~~~--~~~~~~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~~~ka~~rrg~a~~  129 (131)
                      |.+|+..+++  +++|..+.+|.|+|.|+..+|+|++|+.++.++++++|++..++...+.+..
T Consensus        53 ~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~l~~  116 (117)
T d1elwa_          53 YQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNMEA  116 (117)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred             ccccchhhhhHHHhccchhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhC
Confidence            9999999999  8899999999999999999999999999999999999999999998887653

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.03  E-value=8.2e-10  Score=68.14  Aligned_cols=60  Identities=20%  Similarity=0.107  Sum_probs=52.1

Q ss_pred             HHHHHHHHHH--Hhh--hhhHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHh
Q psy18096         68 GILASQELLD--SLI--KERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKC  127 (131)
Q Consensus        68 y~~Ai~~~~~--~~~--~~~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~~~ka~~rrg~a  127 (131)
                      +++||.+|++  ..+  +..+.++.|+|.||.++|+|++|+.+++++|+++|+|.+|..-++..
T Consensus        52 ~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y~~~g~~~~A~~~~~~aL~~~P~~~~A~~l~~~I  115 (122)
T d1nzna_          52 IRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLI  115 (122)
T ss_dssp             HHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhCcCCHHHHHHHHHH
Confidence            7789999988  333  44567999999999999999999999999999999999998777654

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.01  E-value=8.8e-10  Score=70.21  Aligned_cols=61  Identities=23%  Similarity=0.272  Sum_probs=57.1

Q ss_pred             HHHHHHHHHH--HhhhhhHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHhh
Q psy18096         68 GILASQELLD--SLIKERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCL  128 (131)
Q Consensus        68 y~~Ai~~~~~--~~~~~~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~~~ka~~rrg~a~  128 (131)
                      |.+|++++++  +++|.++.+|.++|.||..+|+|++|+.++.++++++|+|..+....+.+.
T Consensus        83 ~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~~  145 (153)
T d2fbna1          83 YPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCV  145 (153)
T ss_dssp             HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred             cchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            9999999999  889999999999999999999999999999999999999999887766654

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.01  E-value=7.8e-10  Score=71.29  Aligned_cols=61  Identities=16%  Similarity=0.097  Sum_probs=57.3

Q ss_pred             HHHHHHHHHH--HhhhhhHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHhh
Q psy18096         68 GILASQELLD--SLIKERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCL  128 (131)
Q Consensus        68 y~~Ai~~~~~--~~~~~~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~~~ka~~rrg~a~  128 (131)
                      |.+||..|++  +++|.++.+|.++|.+|.++|+|++|+.++.++++++|+|..++...+.+.
T Consensus        93 ~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l~~~~  155 (169)
T d1ihga1          93 WQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVK  155 (169)
T ss_dssp             HHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             cchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            9999999999  889999999999999999999999999999999999999999887777664

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=98.99  E-value=1.1e-09  Score=70.58  Aligned_cols=61  Identities=21%  Similarity=0.163  Sum_probs=57.4

Q ss_pred             HHHHHHHHHH--HhhhhhHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHhh
Q psy18096         68 GILASQELLD--SLIKERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCL  128 (131)
Q Consensus        68 y~~Ai~~~~~--~~~~~~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~~~ka~~rrg~a~  128 (131)
                      |.+||..+++  .++|.+..+|.++|.||..+|+|++|+.++.++++++|+|..++..++.+.
T Consensus        80 ~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~  142 (168)
T d1kt1a1          80 YTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQ  142 (168)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHH
T ss_pred             cccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            9999999999  889999999999999999999999999999999999999999888777654

>d1u79a_ d.26.1.1 (A:) FKBP13 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP13
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.98  E-value=7.1e-11  Score=73.42  Aligned_cols=47  Identities=30%  Similarity=0.521  Sum_probs=41.0

Q ss_pred             chhcccCCCcEEEEEEcCCCCCCCCCCC----CCCCCCCceEEEEEeeccc
Q psy18096          3 YVLPLMETGEECQIEITARFGYGDKGEP----SKSIPPGAKLYYSLTLHSV   49 (131)
Q Consensus         3 ~~l~~M~~gE~~~v~i~~~~ayG~~G~~----~~~ip~~~~~~~~v~l~~~   49 (131)
                      .+|+.|++||+++|+|+|++|||++|.+    ...|||++++.|+++|..+
T Consensus        74 ~~l~~M~~G~k~~v~iP~~laYG~~G~~~~~~~~~IPp~s~LifeieLl~~  124 (125)
T d1u79a_          74 DGIPPMLTGGKRTLRIPPELAYGDRGAGCKGGSCLIPPASVLLFDIEYIGK  124 (125)
T ss_dssp             TTBCCCBTTCEEEEEECGGGTTGGGCEEEETTEEEECTTCCEEEEEEEEEE
T ss_pred             hhcccccCCCEEEEEECHHHCCCCCCcCCcCCCCcCCcCCeEEEEEEEEEe
Confidence            4678999999999999999999999852    2459999999999999864

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.97  E-value=6.5e-10  Score=77.63  Aligned_cols=63  Identities=21%  Similarity=0.178  Sum_probs=59.2

Q ss_pred             HHHHHHHHHH--HhhhhhHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHhhhc
Q psy18096         68 GILASQELLD--SLIKERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCLIL  130 (131)
Q Consensus        68 y~~Ai~~~~~--~~~~~~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~~~ka~~rrg~a~~~  130 (131)
                      |.+|+..|++  ++.|..+.++.|+|.+|.++|++++|+..+++||+++|++..+|+++|.+|..
T Consensus       321 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~lg~~~~~  385 (388)
T d1w3ba_         321 IEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKE  385 (388)
T ss_dssp             HHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            8889999988  77899999999999999999999999999999999999999999999999853

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.97  E-value=1.5e-09  Score=70.28  Aligned_cols=61  Identities=23%  Similarity=0.210  Sum_probs=57.3

Q ss_pred             HHHHHHHHHH--HhhhhhHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHhh
Q psy18096         68 GILASQELLD--SLIKERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCL  128 (131)
Q Consensus        68 y~~Ai~~~~~--~~~~~~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~~~ka~~rrg~a~  128 (131)
                      |.+|+.+++.  +++|.++.++.++|.||..+|+|++|+.++.+++++||+|..+....+.+.
T Consensus        78 ~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~  140 (170)
T d1p5qa1          78 FSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQ  140 (170)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred             cccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            8999999999  889999999999999999999999999999999999999999987777664

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=98.88  E-value=4.7e-09  Score=70.67  Aligned_cols=62  Identities=13%  Similarity=0.021  Sum_probs=53.2

Q ss_pred             HHHHHHHHH------HhhhhhHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHhhhc
Q psy18096         69 ILASQELLD------SLIKERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCLIL  130 (131)
Q Consensus        69 ~~Ai~~~~~------~~~~~~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~~~ka~~rrg~a~~~  130 (131)
                      ..|+..+++      ..++..+.+|+|+|.+|.++|+|++|+.+++++|+++|+++.+|+++|.++..
T Consensus        16 e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~   83 (259)
T d1xnfa_          16 EVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQ   83 (259)
T ss_dssp             HHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHH
Confidence            345555544      23567888999999999999999999999999999999999999999999864

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.86  E-value=2.9e-09  Score=75.07  Aligned_cols=61  Identities=11%  Similarity=0.096  Sum_probs=28.5

Q ss_pred             HHHHHHHHHH--HhhhhhHHHHHHHHHHHHHhCC-hHHHHHHHHHHHhhCCCCHHHHHHHHHhh
Q psy18096         68 GILASQELLD--SLIKERINCYNNLAQAQIKLGS-LEPALMSLENVLNLDPNNIKALQRKAKCL  128 (131)
Q Consensus        68 y~~Ai~~~~~--~~~~~~~~~~~N~a~~~~kl~~-~~~a~~~~~~al~~dp~~~ka~~rrg~a~  128 (131)
                      |.+|+.++++  +++|.+..+|+||+.++.+++. +++|+..++++|+++|++..+|++||.++
T Consensus        59 ~~~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~~~~~~~~  122 (315)
T d2h6fa1          59 SERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLV  122 (315)
T ss_dssp             CHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhhHHHHHhHHH
Confidence            4444444444  4444444444444444444432 44444444444444444444444444443

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.86  E-value=2.9e-09  Score=67.84  Aligned_cols=61  Identities=25%  Similarity=0.312  Sum_probs=56.9

Q ss_pred             HHHHHHHHHH--HhhhhhHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHhh
Q psy18096         68 GILASQELLD--SLIKERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCL  128 (131)
Q Consensus        68 y~~Ai~~~~~--~~~~~~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~~~ka~~rrg~a~  128 (131)
                      |.+|+..|++  +++|....+|.++|.|+..+|+|++|+.++++++.++|++..++...+.+.
T Consensus        60 ~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~g~~~eA~~~~~~a~~~~p~~~~~~~~l~~~~  122 (159)
T d1a17a_          60 YGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECN  122 (159)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHcccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence            9999999999  889999999999999999999999999999999999999999987766553

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=98.85  E-value=2.6e-09  Score=68.03  Aligned_cols=63  Identities=24%  Similarity=0.092  Sum_probs=51.8

Q ss_pred             HHHHHHHHHH--Hh------------hhhhHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCC-----------CCHHHHH
Q psy18096         68 GILASQELLD--SL------------IKERINCYNNLAQAQIKLGSLEPALMSLENVLNLDP-----------NNIKALQ  122 (131)
Q Consensus        68 y~~Ai~~~~~--~~------------~~~~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp-----------~~~ka~~  122 (131)
                      |.+||..|++  ++            .+....+|+|+|.||.++|+|++|+.+|+++|.+.|           ...++|+
T Consensus        25 y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~a~~  104 (156)
T d2hr2a1          25 YDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVY  104 (156)
T ss_dssp             HHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccccchhHHHHh
Confidence            8888888888  22            234568999999999999999999999999998754           2467899


Q ss_pred             HHHHhhhc
Q psy18096        123 RKAKCLIL  130 (131)
Q Consensus       123 rrg~a~~~  130 (131)
                      ++|.+|..
T Consensus       105 ~~g~~~~~  112 (156)
T d2hr2a1         105 SRALALDG  112 (156)
T ss_dssp             HHHHHHHH
T ss_pred             hhHHHHHH
Confidence            99999864

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.85  E-value=6.9e-09  Score=68.31  Aligned_cols=62  Identities=15%  Similarity=-0.009  Sum_probs=56.5

Q ss_pred             HHHHHHHHHH--HhhhhhHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCC----------------HHHHHHHHHhhh
Q psy18096         68 GILASQELLD--SLIKERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNN----------------IKALQRKAKCLI  129 (131)
Q Consensus        68 y~~Ai~~~~~--~~~~~~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~~----------------~ka~~rrg~a~~  129 (131)
                      |.+|++.|++  +++|..+.+|+|+|.||.++|+|++|+.+|++||...|.|                .+++|++|.++.
T Consensus        52 ~~~A~~~~~kAl~ldp~~~~a~~~~g~~~~~~g~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~  131 (192)
T d1hh8a_          52 MTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYA  131 (192)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHhhhhhhhHHHHHHHHHhhccHHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHH
Confidence            9999999999  8999999999999999999999999999999999876654                478889888765

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.84  E-value=6.7e-09  Score=72.03  Aligned_cols=63  Identities=17%  Similarity=0.094  Sum_probs=59.1

Q ss_pred             HHHHHHHHHH--HhhhhhHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHhhhc
Q psy18096         68 GILASQELLD--SLIKERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCLIL  130 (131)
Q Consensus        68 y~~Ai~~~~~--~~~~~~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~~~ka~~rrg~a~~~  130 (131)
                      |.+|+..|++  ...|....++.++|.++.++|++++|+..++++++++|+++.+|+..|.++..
T Consensus       188 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~  252 (323)
T d1fcha_         188 YDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCIN  252 (323)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HhhhhcccccccccccccccchhhhhhcccccccchhHHHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence            8999999988  77888999999999999999999999999999999999999999999998853

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.83  E-value=1.3e-08  Score=70.44  Aligned_cols=63  Identities=19%  Similarity=0.101  Sum_probs=60.2

Q ss_pred             HHHHHHHHHH--HhhhhhHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHhhhc
Q psy18096         68 GILASQELLD--SLIKERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCLIL  130 (131)
Q Consensus        68 y~~Ai~~~~~--~~~~~~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~~~ka~~rrg~a~~~  130 (131)
                      |.+|+..|++  +.+|..+.+|.++|.++..+|++++|+..++++++++|++..+|++.|.++..
T Consensus        35 ~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~   99 (323)
T d1fcha_          35 LPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTN   99 (323)
T ss_dssp             HHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccccccccccccccccccc
Confidence            9999999999  88899999999999999999999999999999999999999999999988753

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.83  E-value=5e-09  Score=73.80  Aligned_cols=62  Identities=13%  Similarity=0.041  Sum_probs=59.4

Q ss_pred             HHHHHHHHHH--HhhhhhHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHhhh
Q psy18096         68 GILASQELLD--SLIKERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCLI  129 (131)
Q Consensus        68 y~~Ai~~~~~--~~~~~~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~~~ka~~rrg~a~~  129 (131)
                      |++|+..+++  +++|.+..+|.|||.++.++|++++|+.+++++|++||+|..+|+.+|.++.
T Consensus        94 ~~eal~~~~~al~~~p~~~~a~~~~~~~~~~l~~~~eAl~~~~kal~~dp~n~~a~~~~~~~~~  157 (315)
T d2h6fa1          94 LHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQ  157 (315)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhhhHHHHHhHHHHhhccHHHHHHHHhhhhhhhhcchHHHHHHHHHHH
Confidence            8899999888  8899999999999999999999999999999999999999999999998875

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.82  E-value=8.5e-09  Score=71.78  Aligned_cols=66  Identities=9%  Similarity=0.016  Sum_probs=61.0

Q ss_pred             HHHH-HHHHHHHHHH--HhhhhhHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHhhh
Q psy18096         64 LDFG-GILASQELLD--SLIKERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCLI  129 (131)
Q Consensus        64 ~~~~-y~~Ai~~~~~--~~~~~~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~~~ka~~rrg~a~~  129 (131)
                      .+.| |.+|++.|++  +..|.++.++.++|.+|.++|+|++|+..++++++++|++..+|++.|.++.
T Consensus        10 ~~~G~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~   78 (388)
T d1w3ba_          10 YQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYK   78 (388)
T ss_dssp             HHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhh
Confidence            3444 9999999999  7789999999999999999999999999999999999999999999999875

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.65  E-value=1.2e-07  Score=58.17  Aligned_cols=57  Identities=23%  Similarity=0.224  Sum_probs=49.6

Q ss_pred             HHHHHHHHHH--Hhhhh-hHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHH
Q psy18096         68 GILASQELLD--SLIKE-RINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRK  124 (131)
Q Consensus        68 y~~Ai~~~~~--~~~~~-~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~~~ka~~rr  124 (131)
                      .++||.+++.  ..+|. ...+++|+|.+|.++|+|++|+..|+++|+++|+|..|..-+
T Consensus        54 ~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA~~L~  113 (124)
T d2pqrb1          54 ERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALK  113 (124)
T ss_dssp             HHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHHHHHHH
Confidence            6789999988  44454 458999999999999999999999999999999999987544

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.63  E-value=2.1e-09  Score=70.03  Aligned_cols=50  Identities=18%  Similarity=0.186  Sum_probs=47.7

Q ss_pred             HHHHHHHHHH--HhhhhhHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCC
Q psy18096         68 GILASQELLD--SLIKERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNN  117 (131)
Q Consensus        68 y~~Ai~~~~~--~~~~~~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~~  117 (131)
                      |.+|+..|++  +++|.++.+|.|+|.+|.++|+|++|+.++.+|++++|++
T Consensus        54 ~~~Ai~~~~~al~l~p~~~~a~~~lg~~~~~l~~~~~A~~~~~~al~l~p~~  105 (201)
T d2c2la1          54 PEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQ  105 (201)
T ss_dssp             HHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred             hhhhhHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc
Confidence            9999999999  8889999999999999999999999999999999998854

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.59  E-value=7.8e-08  Score=60.50  Aligned_cols=60  Identities=10%  Similarity=0.071  Sum_probs=53.2

Q ss_pred             HHHHHHHHHH--HhhhhhHHHHHHHHHHHHHhC-----------ChHHHHHHHHHHHhhCCCCHHHHHHHHHh
Q psy18096         68 GILASQELLD--SLIKERINCYNNLAQAQIKLG-----------SLEPALMSLENVLNLDPNNIKALQRKAKC  127 (131)
Q Consensus        68 y~~Ai~~~~~--~~~~~~~~~~~N~a~~~~kl~-----------~~~~a~~~~~~al~~dp~~~ka~~rrg~a  127 (131)
                      +.+||..|++  +++|....+|+|+|.+|..+|           .|.+|+..+.++|+++|+|..++...+.+
T Consensus        57 ~~~Ai~~~~kAl~l~P~~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~  129 (145)
T d1zu2a1          57 IQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMT  129 (145)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcchhhHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhcccccCCCHHHHHHHHHHH
Confidence            6889999999  899999999999999999875           47999999999999999998877666654

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.58  E-value=2.5e-08  Score=61.26  Aligned_cols=63  Identities=8%  Similarity=-0.046  Sum_probs=55.0

Q ss_pred             HHHHHHHHHH--HhhhhhHHHHHHHHHHHHHhC---ChHHHHHHHHHHHhhCCCCH--HHHHHHHHhhhc
Q psy18096         68 GILASQELLD--SLIKERINCYNNLAQAQIKLG---SLEPALMSLENVLNLDPNNI--KALQRKAKCLIL  130 (131)
Q Consensus        68 y~~Ai~~~~~--~~~~~~~~~~~N~a~~~~kl~---~~~~a~~~~~~al~~dp~~~--ka~~rrg~a~~~  130 (131)
                      |.+|.+.|.+  .++|..+.+++|+|.|+++.+   ++.+|+..++++|..+|++.  .+||..|.+|..
T Consensus        15 l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y~~   84 (122)
T d1nzna_          15 LLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYR   84 (122)
T ss_dssp             HHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHH
Confidence            8889999988  778999999999999999754   56679999999999998774  599999999864

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.55  E-value=2.9e-07  Score=59.90  Aligned_cols=53  Identities=17%  Similarity=0.227  Sum_probs=49.1

Q ss_pred             HhhhhhHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHhhhc
Q psy18096         78 SLIKERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCLIL  130 (131)
Q Consensus        78 ~~~~~~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~~~ka~~rrg~a~~~  130 (131)
                      .+.+....++.+++.+++++|+|++|+.+|++++++||.+..+|.+.+.+|..
T Consensus        61 ~l~~~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~P~~e~~~~~l~~al~~  113 (179)
T d2ff4a2          61 ALVEDKVLAHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYL  113 (179)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCccHHHHHHHHHHHHH
Confidence            44677889999999999999999999999999999999999999999999864

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.41  E-value=4.2e-07  Score=55.69  Aligned_cols=47  Identities=19%  Similarity=0.248  Sum_probs=43.5

Q ss_pred             HHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHhhhc
Q psy18096         84 INCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCLIL  130 (131)
Q Consensus        84 ~~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~~~ka~~rrg~a~~~  130 (131)
                      +..+-|+|.++++.|+|++|+.+++++|+++|++..+|+.+|.++..
T Consensus         4 a~~~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~   50 (128)
T d1elra_           4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFE   50 (128)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHH
Confidence            44577999999999999999999999999999999999999999864

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=98.35  E-value=5.8e-07  Score=53.80  Aligned_cols=45  Identities=18%  Similarity=0.146  Sum_probs=42.1

Q ss_pred             HHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHhhhc
Q psy18096         86 CYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCLIL  130 (131)
Q Consensus        86 ~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~~~ka~~rrg~a~~~  130 (131)
                      ...++|.++.+.|++.+|+..+++++.++|+++.+|+.+|.++..
T Consensus        18 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~   62 (112)
T d1hxia_          18 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAE   62 (112)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhh
Confidence            457899999999999999999999999999999999999999864

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=98.27  E-value=1.7e-06  Score=59.51  Aligned_cols=62  Identities=13%  Similarity=0.052  Sum_probs=57.7

Q ss_pred             HHHHHHHHHH--HhhhhhHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHhhh
Q psy18096         68 GILASQELLD--SLIKERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCLI  129 (131)
Q Consensus        68 y~~Ai~~~~~--~~~~~~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~~~ka~~rrg~a~~  129 (131)
                      +.+|+..|.+  +.+|.+..++.+++.++...|+|++|+..++++++++|++..++...+.++.
T Consensus        12 l~eAl~~l~~al~~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~   75 (264)
T d1zbpa1          12 LQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVK   75 (264)
T ss_dssp             HHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence            8899999999  7889999999999999999999999999999999999999999888777653

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.14  E-value=2.1e-06  Score=59.81  Aligned_cols=62  Identities=16%  Similarity=0.047  Sum_probs=55.9

Q ss_pred             HHHHHHHHHH--HhhhhhHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHhhh
Q psy18096         68 GILASQELLD--SLIKERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCLI  129 (131)
Q Consensus        68 y~~Ai~~~~~--~~~~~~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~~~ka~~rrg~a~~  129 (131)
                      +.+|+..+.+  +..|....++.++|.++..+|++++|+.++++++++||.+...|...+..++
T Consensus       258 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP~~~~y~~~L~~~~~  321 (334)
T d1dcea1         258 ELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFL  321 (334)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcccHHHHHHHHHHHh
Confidence            8889998888  7788999999999999999999999999999999999998888777766554

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=98.09  E-value=2.4e-06  Score=53.78  Aligned_cols=36  Identities=22%  Similarity=0.142  Sum_probs=32.3

Q ss_pred             hhhHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCC
Q psy18096         81 KERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPN  116 (131)
Q Consensus        81 ~~~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~  116 (131)
                      +....+++|+|.+|.++|++++|+.+++++++++|+
T Consensus        97 ~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~  132 (156)
T d2hr2a1          97 KLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEE  132 (156)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             chhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence            456678999999999999999999999999999753

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.05  E-value=5.7e-06  Score=61.20  Aligned_cols=62  Identities=16%  Similarity=0.034  Sum_probs=58.1

Q ss_pred             HHHHHHHHHH--HhhhhhHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHhhh
Q psy18096         68 GILASQELLD--SLIKERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCLI  129 (131)
Q Consensus        68 y~~Ai~~~~~--~~~~~~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~~~ka~~rrg~a~~  129 (131)
                      |.+|+.+|.+  ++.|.....|+|+|.++...|++.+|+.+|.++|.++|....|+.+.+.++-
T Consensus       168 ~~~A~~~y~~A~~l~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~~~~~~a~~nL~~~~~  231 (497)
T d1ya0a1         168 TSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALS  231 (497)
T ss_dssp             HHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Confidence            9999999999  8899999999999999999999999999999999999999999999887753

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.93  E-value=1.4e-05  Score=55.48  Aligned_cols=62  Identities=13%  Similarity=0.096  Sum_probs=55.1

Q ss_pred             HHHHHHHHHH--HhhhhhHHHHHHHHHHHHHhCC----------hHHHHHHHHHHHhhCCCCHHHHHHHHHhhh
Q psy18096         68 GILASQELLD--SLIKERINCYNNLAQAQIKLGS----------LEPALMSLENVLNLDPNNIKALQRKAKCLI  129 (131)
Q Consensus        68 y~~Ai~~~~~--~~~~~~~~~~~N~a~~~~kl~~----------~~~a~~~~~~al~~dp~~~ka~~rrg~a~~  129 (131)
                      +++|+.++++  +++|....+|++|+.+...++.          +.+|+..++++++.+|++..+|+.+|.++.
T Consensus        45 ~~~al~~~~~~l~~~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~pk~~~~~~~~~~~~~  118 (334)
T d1dcea1          45 DESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLS  118 (334)
T ss_dssp             SHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHhhHHHH
Confidence            5789988888  8899999999999988777654          889999999999999999999999998864

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.84  E-value=1.2e-05  Score=59.32  Aligned_cols=49  Identities=14%  Similarity=0.029  Sum_probs=44.9

Q ss_pred             hhhHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCHHHHHHHHHhhh
Q psy18096         81 KERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCLI  129 (131)
Q Consensus        81 ~~~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~~~ka~~rrg~a~~  129 (131)
                      +....++.|+|.++..+++|++|+.++.+|++++|++..+|+..|.++.
T Consensus       149 ~~~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~~~  197 (497)
T d1ya0a1         149 YICQHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILAS  197 (497)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCchHHHHHHHHHHH
Confidence            3445689999999999999999999999999999999999999999875

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.67  E-value=4.3e-05  Score=52.22  Aligned_cols=61  Identities=21%  Similarity=0.096  Sum_probs=48.0

Q ss_pred             HHHHHHHHHH--H------hhhhhHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCC------HHHHHHHHHhh
Q psy18096         68 GILASQELLD--S------LIKERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNN------IKALQRKAKCL  128 (131)
Q Consensus        68 y~~Ai~~~~~--~------~~~~~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~~------~ka~~rrg~a~  128 (131)
                      |.+|++.|.+  +      -.+....+|.|+|.||.++|+|++|+..+++++.+.+++      ..++.+.|.++
T Consensus        53 ~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~  127 (290)
T d1qqea_          53 LNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEIL  127 (290)
T ss_dssp             THHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHHHHHhH
Confidence            6666666666  2      235567899999999999999999999999999987655      56677777665

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.59  E-value=0.00018  Score=48.93  Aligned_cols=62  Identities=13%  Similarity=0.053  Sum_probs=46.8

Q ss_pred             HHHHHHHHHH--------HhhhhhHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCH-------HHHHHHHHhhh
Q psy18096         68 GILASQELLD--------SLIKERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNI-------KALQRKAKCLI  129 (131)
Q Consensus        68 y~~Ai~~~~~--------~~~~~~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~~~-------ka~~rrg~a~~  129 (131)
                      |.+|+..|.+        ...+....++.|+|.++.++|+|++|+..+++++...|++.       ..+++.|.+++
T Consensus       134 ~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  210 (290)
T d1qqea_         134 YAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQL  210 (290)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHHHHHHHHHH
Confidence            6666666665        22345677899999999999999999999999999987764       34456565543

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.46  E-value=0.00012  Score=42.08  Aligned_cols=47  Identities=9%  Similarity=-0.000  Sum_probs=39.3

Q ss_pred             HHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCC-------HHHHHHHHHhhhc
Q psy18096         84 INCYNNLAQAQIKLGSLEPALMSLENVLNLDPNN-------IKALQRKAKCLIL  130 (131)
Q Consensus        84 ~~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~~-------~ka~~rrg~a~~~  130 (131)
                      +.-..++|.++.++|+|.+|+..+++|++++|.+       ..+|+..|.++..
T Consensus         5 addc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~   58 (95)
T d1tjca_           5 AEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQ   58 (95)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHh
Confidence            3446799999999999999999999999987644       6788888887753

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.31  E-value=0.00039  Score=44.55  Aligned_cols=57  Identities=23%  Similarity=0.198  Sum_probs=49.4

Q ss_pred             HHHHHHHHHH--HhhhhhHHHHHHHHHHHHHhCChHHHHHHHHHH-------HhhCCCC-HHHHHHH
Q psy18096         68 GILASQELLD--SLIKERINCYNNLAQAQIKLGSLEPALMSLENV-------LNLDPNN-IKALQRK  124 (131)
Q Consensus        68 y~~Ai~~~~~--~~~~~~~~~~~N~a~~~~kl~~~~~a~~~~~~a-------l~~dp~~-~ka~~rr  124 (131)
                      |.+|+.++++  .++|....+|.+++.++.++|++.+|++.|.++       |.++|.. ...++++
T Consensus        83 ~~~Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l~~l~~~  149 (179)
T d2ff4a2          83 ASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRALNER  149 (179)
T ss_dssp             HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHHHH
T ss_pred             chHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHHHHHHHH
Confidence            9999999999  889999999999999999999999999999987       6688864 3444443

>d1hxva_ d.26.1.1 (A:) Trigger factor PPIase domain {Mycoplasma genitalium [TaxId: 2097]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Trigger factor PPIase domain
species: Mycoplasma genitalium [TaxId: 2097]

Probab=97.24  E-value=6.3e-05  Score=42.71  Aligned_cols=42  Identities=14%  Similarity=0.192  Sum_probs=36.7

Q ss_pred             cchhcccCCCcEEEEEEcCCCCCCCCCCCCCCCCCCceEEEEEeeccc
Q psy18096          2 DYVLPLMETGEECQIEITARFGYGDKGEPSKSIPPGAKLYYSLTLHSV   49 (131)
Q Consensus         2 d~~l~~M~~gE~~~v~i~~~~ayG~~G~~~~~ip~~~~~~~~v~l~~~   49 (131)
                      |.+|..|++||+..|.+++...|+..+.      ++.++.|+|+++++
T Consensus        43 ~~~l~g~~~Ge~~~~~i~~p~~y~~~~l------aGk~~~f~V~v~~V   84 (85)
T d1hxva_          43 ETGLIAMKVNQKKTLALTFPSDYHVKEL------QSKPVTFEVVLKAI   84 (85)
T ss_dssp             HHHHHTSCSSEEEEECCCCCTTSSSSGG------GSCCCEEEEEECCB
T ss_pred             HHHhccCcCCCeEEEEEEChhhcCcccC------CCCcEEEEEEEEEe
Confidence            6789999999999999999988888663      56788999999876

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=96.89  E-value=0.0011  Score=44.29  Aligned_cols=35  Identities=20%  Similarity=0.085  Sum_probs=20.3

Q ss_pred             hhhhHHHHHHHHHHHHHhCChHHHHHHHHHHHhhC
Q psy18096         80 IKERINCYNNLAQAQIKLGSLEPALMSLENVLNLD  114 (131)
Q Consensus        80 ~~~~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~d  114 (131)
                      .+....++.++|.+|.++|++++|+..+.+||++.
T Consensus       287 ~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~l~  321 (366)
T d1hz4a_         287 MSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLA  321 (366)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh
Confidence            34455555666666666666666666666666553

>d1ix5a_ d.26.1.1 (A:) Archaeal FKBP {Archaeon Methanococcus thermolithotrophicus [TaxId: 2186]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Archaeal FKBP
species: Archaeon Methanococcus thermolithotrophicus [TaxId: 2186]

Probab=96.84  E-value=0.00017  Score=45.25  Aligned_cols=28  Identities=29%  Similarity=0.516  Sum_probs=26.2

Q ss_pred             CcchhcccCCCcEEEEEEcCCCCCCCCC
Q psy18096          1 MDYVLPLMETGEECQIEITARFGYGDKG   28 (131)
Q Consensus         1 ld~~l~~M~~gE~~~v~i~~~~ayG~~G   28 (131)
                      +|.+|..|+.||+..|+|+|+.|||.+.
T Consensus        58 lE~al~gm~~Ge~~~v~i~p~~ayG~~d   85 (151)
T d1ix5a_          58 FEEAVLDMEVGDEKTVKIPAEKAYGNRN   85 (151)
T ss_dssp             HHHHHHTCCTTCCCEEEECTTTSSCSCC
T ss_pred             HHHHHHhhcCCceeEEEeCHHHhccccc
Confidence            4789999999999999999999999876

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=96.54  E-value=0.0045  Score=41.18  Aligned_cols=62  Identities=15%  Similarity=0.061  Sum_probs=48.9

Q ss_pred             HHHHHHHHHH--Hhhh-----hhHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCH------HHHHHHHHhhh
Q psy18096         68 GILASQELLD--SLIK-----ERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNI------KALQRKAKCLI  129 (131)
Q Consensus        68 y~~Ai~~~~~--~~~~-----~~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~~~------ka~~rrg~a~~  129 (131)
                      |.+|+.++++  +..|     ....++.++|.+|..+|++++|+..+.+++++.+...      .+++..+..+.
T Consensus        28 ~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~  102 (366)
T d1hz4a_          28 PDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILF  102 (366)
T ss_dssp             HHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHH
Confidence            9999999988  3322     3467899999999999999999999999999998773      45555555543

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=96.01  E-value=0.031  Score=33.14  Aligned_cols=60  Identities=13%  Similarity=-0.128  Sum_probs=44.6

Q ss_pred             HHHHHHHHHHHhhhhhHHHHHHHHHHHHH----hCChHHHHHHHHHHHhhCCCCHHHHHHHHHhhh
Q psy18096         68 GILASQELLDSLIKERINCYNNLAQAQIK----LGSLEPALMSLENVLNLDPNNIKALQRKAKCLI  129 (131)
Q Consensus        68 y~~Ai~~~~~~~~~~~~~~~~N~a~~~~k----l~~~~~a~~~~~~al~~dp~~~ka~~rrg~a~~  129 (131)
                      +++|+++|.+..+...+.+..++|..|..    ..++.+|+..+.++.+.  .++.|.++.|..|.
T Consensus        39 ~~~a~~~~~~aa~~g~~~a~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~~--g~~~a~~~Lg~~y~  102 (133)
T d1klxa_          39 KQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQY  102 (133)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhhhcccchhhhhhHHHhhhhccccchhhHHHHHHHhhhhcc--CcchHHHHHHHHHH
Confidence            66777777775555677778888888876    45688888888888764  46778888877654

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=95.86  E-value=0.012  Score=38.59  Aligned_cols=59  Identities=10%  Similarity=-0.077  Sum_probs=38.0

Q ss_pred             HHHHHHHHHHHhhhhhHHHHHHHHHHHHH----hCChHHHHHHHHHHHhhCCCCHHHHHHHHHhh
Q psy18096         68 GILASQELLDSLIKERINCYNNLAQAQIK----LGSLEPALMSLENVLNLDPNNIKALQRKAKCL  128 (131)
Q Consensus        68 y~~Ai~~~~~~~~~~~~~~~~N~a~~~~k----l~~~~~a~~~~~~al~~dp~~~ka~~rrg~a~  128 (131)
                      |.+|+++|.+-.+.....++.|+|.+|..    ..++..|+..+..+...+  +..+.+..|..+
T Consensus        18 ~~~A~~~~~kAa~~g~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~--~~~a~~~l~~~~   80 (265)
T d1ouva_          18 FTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNGCHLLGNLY   80 (265)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc--ccchhhcccccc
Confidence            67777777774444566677777777776    556777777777766433  556666655543

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=95.35  E-value=0.052  Score=35.32  Aligned_cols=49  Identities=10%  Similarity=-0.087  Sum_probs=39.2

Q ss_pred             hhhhhHHHHHHHHHHHHH----hCChHHHHHHHHHHHhhCCCCHHHHHHHHHhhh
Q psy18096         79 LIKERINCYNNLAQAQIK----LGSLEPALMSLENVLNLDPNNIKALQRKAKCLI  129 (131)
Q Consensus        79 ~~~~~~~~~~N~a~~~~k----l~~~~~a~~~~~~al~~dp~~~ka~~rrg~a~~  129 (131)
                      .+.....+..|+|.+|..    .+++++|+..+.++.+.  ++++|+|+.|..+.
T Consensus       173 ~~~g~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~--g~~~a~~~LG~~y~  225 (265)
T d1ouva_         173 CDLKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACEL--ENGGGCFNLGAMQY  225 (265)
T ss_dssp             HHTTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHH
T ss_pred             ccccccccccchhhhcccCcccccchhhhhhhHhhhhcc--cCHHHHHHHHHHHH
Confidence            345577888889988887    67899999999998876  47888888888764

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.08  E-value=0.31  Score=32.40  Aligned_cols=59  Identities=14%  Similarity=0.039  Sum_probs=36.7

Q ss_pred             HHHHHHHHHH---HhhhhhHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCH-HHHHHHHH
Q psy18096         68 GILASQELLD---SLIKERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNI-KALQRKAK  126 (131)
Q Consensus        68 y~~Ai~~~~~---~~~~~~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~~~-ka~~rrg~  126 (131)
                      +.+|..+|++   ...|....++...+....++|++++|...++++|+.+|.+. ..|...+.
T Consensus        80 ~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~  142 (308)
T d2onda1          80 SDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMK  142 (308)
T ss_dssp             HHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHH
Confidence            3444555554   12455566777777777777777777777777777777653 34544443

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=92.28  E-value=0.27  Score=28.74  Aligned_cols=48  Identities=15%  Similarity=-0.022  Sum_probs=41.0

Q ss_pred             HHHHHHHHHHHhhhhhHHHHHHHHHHHHH----hCChHHHHHHHHHHHhhCC
Q psy18096         68 GILASQELLDSLIKERINCYNNLAQAQIK----LGSLEPALMSLENVLNLDP  115 (131)
Q Consensus        68 y~~Ai~~~~~~~~~~~~~~~~N~a~~~~k----l~~~~~a~~~~~~al~~dp  115 (131)
                      +.+|+++|.+-.+...+.+..+++.+|..    ..++.+|+..+.+|.++..
T Consensus        75 ~~~A~~~~~~aa~~g~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G~  126 (133)
T d1klxa_          75 LRKAAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS  126 (133)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred             hHHHHHHHhhhhccCcchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCCC
Confidence            78999999885566678889999999998    5789999999999998753

>d1l1pa_ d.26.1.1 (A:) Trigger factor PPIase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Trigger factor PPIase domain
species: Escherichia coli [TaxId: 562]

Probab=92.24  E-value=0.11  Score=29.87  Aligned_cols=45  Identities=20%  Similarity=0.219  Sum_probs=33.3

Q ss_pred             cchhcccCCCcEEEEEEcCCCCCCCCCCCCCCCCCCceEEEEEeeccccCC
Q psy18096          2 DYVLPLMETGEECQIEITARFGYGDKGEPSKSIPPGAKLYYSLTLHSVLPD   52 (131)
Q Consensus         2 d~~l~~M~~gE~~~v~i~~~~ayG~~G~~~~~ip~~~~~~~~v~l~~~~~~   52 (131)
                      +.+|..|++||...|.+.---.|.      ..--.+..+.|.|+++++.+.
T Consensus        56 ~~~L~G~k~Ge~~~~~~~~P~d~~------~~~laGK~v~f~V~v~~i~~~  100 (106)
T d1l1pa_          56 EDGIKGHKAGEEFTIDVTFPEEYH------AENLKGKAAKFAINLKKVEER  100 (106)
T ss_dssp             HHHTTSCCTTCCEEEEECCCSSCC------CTTTTTCCEEEEEEEEEEECC
T ss_pred             HHHhcCCCCCceEEEEEEeCCCCC------chhhCCCEEEEEEEEEEeccc
Confidence            578999999999999997432222      122356789999999998654

>d1t11a3 d.26.1.1 (A:135-247) Trigger factor PPIase domain {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Trigger factor PPIase domain
species: Vibrio cholerae [TaxId: 666]

Probab=92.07  E-value=0.054  Score=31.60  Aligned_cols=45  Identities=16%  Similarity=0.187  Sum_probs=32.7

Q ss_pred             CcchhcccCCCcEEEEEEcCCCCCCCCCCCCCCCCCCceEEEEEeeccccC
Q psy18096          1 MDYVLPLMETGEECQIEITARFGYGDKGEPSKSIPPGAKLYYSLTLHSVLP   51 (131)
Q Consensus         1 ld~~l~~M~~gE~~~v~i~~~~ayG~~G~~~~~ip~~~~~~~~v~l~~~~~   51 (131)
                      ++.+|..|++||+..|.+.---.|....      -.+.++.|.++++++.+
T Consensus        64 f~~~L~G~k~Ge~~~~~~~~Ped~~~~~------laGk~~~f~v~v~~Ik~  108 (113)
T d1t11a3          64 FEDGIVGKTKGMEFVIDVTFPEDYHAEN------LKGKAAKFAIKVNKVEA  108 (113)
T ss_dssp             SGGGTTTCCSSCCCCEEEECCTTCSCTT------TSSCEEEECCCEEEEEE
T ss_pred             HHHhhcCCcCCCEEEEEEeCCCcCCccc------cCCCeEEEEEEEEEEEe
Confidence            4789999999999999887432232221      25668999999998754

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=90.85  E-value=0.25  Score=32.83  Aligned_cols=38  Identities=8%  Similarity=-0.106  Sum_probs=31.6

Q ss_pred             hhhHHHHHHHHHHHHHhCChHHHHHHHHHHHhhCCCCH
Q psy18096         81 KERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNI  118 (131)
Q Consensus        81 ~~~~~~~~N~a~~~~kl~~~~~a~~~~~~al~~dp~~~  118 (131)
                      |.....+..++..+...|++++|+..+.+++++.|+..
T Consensus        96 p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p~~~  133 (264)
T d1zbpa1          96 NEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKG  133 (264)
T ss_dssp             CHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCC
T ss_pred             chHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCC
Confidence            55667777888888889999999999999999988764

>d2crba1 a.7.16.1 (A:8-90) Nuclear receptor binding factor 2, NRBF2, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: MIT domain-like
family: MIT domain
domain: Nuclear receptor binding factor 2, NRBF2, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=89.98  E-value=0.38  Score=26.25  Aligned_cols=37  Identities=16%  Similarity=0.138  Sum_probs=27.9

Q ss_pred             HHHHHHHHHHHHHhCChHHHHHHHHHHHh-------hCCCCHHHH
Q psy18096         84 INCYNNLAQAQIKLGSLEPALMSLENVLN-------LDPNNIKAL  121 (131)
Q Consensus        84 ~~~~~N~a~~~~kl~~~~~a~~~~~~al~-------~dp~~~ka~  121 (131)
                      +..+..+|--+++-|.|++||.+..+|..       + +++..++
T Consensus         8 AH~~~RrAer~l~~~rydeAIech~kA~~yl~eA~kl-t~s~~~l   51 (83)
T d2crba1           8 AHQQSRRADRLLAAGKYEEAISCHRKATTYLSEAMKL-TESEQAH   51 (83)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTT-CCCHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhC-CCcHHHH
Confidence            45677889999999999999998776554       3 5565554

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=82.78  E-value=2.5  Score=24.67  Aligned_cols=49  Identities=14%  Similarity=-0.008  Sum_probs=40.3

Q ss_pred             hhHHHHHHHHHHHHHhC---ChHHHHHHHHHHHhhCCCCH-HHHHHHHHhhhc
Q psy18096         82 ERINCYNNLAQAQIKLG---SLEPALMSLENVLNLDPNNI-KALQRKAKCLIL  130 (131)
Q Consensus        82 ~~~~~~~N~a~~~~kl~---~~~~a~~~~~~al~~dp~~~-ka~~rrg~a~~~  130 (131)
                      ..+..-.|.|-|..+..   +..++|..+++++..+|.+. .+||..|.++..
T Consensus        33 ~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyk   85 (124)
T d2pqrb1          33 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYK   85 (124)
T ss_dssp             SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHH
T ss_pred             CCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHH
Confidence            44567789999998764   56799999999999999774 799999998753

>d2o02a1 a.118.7.1 (A:1-230) zeta isoform {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: 14-3-3 protein
family: 14-3-3 protein
domain: zeta isoform
species: Cow (Bos taurus) [TaxId: 9913]

Probab=81.49  E-value=4.1  Score=26.24  Aligned_cols=45  Identities=16%  Similarity=-0.054  Sum_probs=37.6

Q ss_pred             HHHHHHHHHH---HhhhhhHHHHHHHHHHHHH-hCChHHHHHHHHHHHh
Q psy18096         68 GILASQELLD---SLIKERINCYNNLAQAQIK-LGSLEPALMSLENVLN  112 (131)
Q Consensus        68 y~~Ai~~~~~---~~~~~~~~~~~N~a~~~~k-l~~~~~a~~~~~~al~  112 (131)
                      |++|+.....   ..+|....+.+|.+..|.. +++.++|+..+.+|+.
T Consensus       149 Y~~A~~~A~~~L~~t~pirLgL~LN~SVF~YEi~~~~~~A~~lak~afd  197 (230)
T d2o02a1         149 YQEAFEISKKEMQPTHPIRLGLALNFSVFYYEILNSPEKACSLAKTAFD  197 (230)
T ss_dssp             HHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCCCchHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            9999988876   4567788888899998875 6999999999888874