Psyllid ID: psy18159

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290----
MDQHEIDMSMNLTNSNNKKAESQNSRKTVLKSKQTTVSEKKEKSLIEHFDKEIQLEDKPKVTGPPSDVDDFDKETWEDPLQVSCYAMHIFEYLKSREAEFQIKDYLPFQSSTEKGNINAEMRSVLVDWMVEVQETFELNHETLYLAVKLVDLYLGKVVCSRLNLQLLGATAIFVSSKFDDRIPPQLSDLEYICSHTYSIQDLKDMEIKLVTAIGFDLGIPLSYRFLRRYARCNRIQLPLLTLARYILELSLMEYSLIRESDSKLACASLYLAQKMNKLTPWNKTLEYYSEEKLY
cccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHccccccccccccccccccccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHcccccccccccEEEccccccHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHccccccccHHHHHHcccccc
ccccccEEEEccccccccccccccccccccccccccccccccccccccccHcccHHHcccccccccccccccHHccccHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHcccccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHccccccHHHHHHHccccccHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHcHHccccHHHHHHHHHHHHHHHHccccccHHHHHHcccEEc
MDQHEIDMsmnltnsnnkkaesqnsRKTVLKSKQTTVSEKKEKSLIEHFDkeiqledkpkvtgppsdvddfdketwedplqvSCYAMHIFEYLKSREAEfqikdylpfqsstekgninAEMRSVLVDWMVEVQETFELNHETLYLAVKLVDLYLGKVVCSRLNLQLLGATAIfvsskfddrippqlsdleyicsHTYSIQDLKDMEIKLVTAIGFDLGIPLSYRFLRRYARCNRIQLPLLTLARYILELSLMEYSLIRESDSKLACASLYLAQKMnkltpwnktleyyseekly
mdqheidmsmnltnsnnkkaesqnsrktvlkskqttvsekkeksliehfdkeiqledkpkvtgppsdVDDFDKETWEDPLQVSCYAMHIFEYLKSREAEFQIKDYLpfqsstekgnINAEMRSVLVDWMVEVQETFELNHETLYLAVKLVDLYLGKVVCSRLNLQLLGATAIFVSSKFDDRIPPQLSDLEYICSHTYSIQDLKDMEIKLVTAIGFDLGIPLSYRFLRRYARCNRIQLPLLTLARYILELSLMEYSLIRESDSKLACASLYLAqkmnkltpwnktleyyseekly
MDQHEIDMSMNLTNSNNKKAESQNSRKTVLKSKQTTVSEKKEKSLIEHFDKEIQLEDKPKVTGPPSDVDDFDKETWEDPLQVSCYAMHIFEYLKSREAEFQIKDYLPFQSSTEKGNINAEMRSVLVDWMVEVQETFELNHETLYLAVKLVDLYLGKVVCSRLNLQLLGATAIFVSSKFDDRIPPQLSDLEYICSHTYSIQDLKDMEIKLVTAIGFDLGIPLSYRFLRRYARCNRIQLPLLTLARYILELSLMEYSLIRESDSKLACASLYLAQKMNKLTPWNKTLEYYSEEKLY
**************************************************************************TWEDPLQVSCYAMHIFEYLKSREAEFQIKDYLPFQSSTEKGNINAEMRSVLVDWMVEVQETFELNHETLYLAVKLVDLYLGKVVCSRLNLQLLGATAIFVSSKFDDRIPPQLSDLEYICSHTYSIQDLKDMEIKLVTAIGFDLGIPLSYRFLRRYARCNRIQLPLLTLARYILELSLMEYSLIRESDSKLACASLYLAQKMNKLTPWNKTLEYY******
******************************************************************DVDDFDKETWEDPLQVSCYAMHIFEYLKSREAEFQIKDYLPFQSSTEKGNINAEMRSVLVDWMVEVQETFELNHETLYLAVKLVDLYLGKVVCSRLNLQLLGATAIFVSSKFDDRIPPQLSDLEYICSHTYSIQDLKDMEIKLVTAIGFDLGIPLSYRFLRRYARCNRIQLPLLTLARYILELSLMEYSLIRESDSKLACASLYLAQKMNKLTPWNKTLEYYSEEKLY
********SMNLTNS***************************KSLIEHFDKEIQLEDKPKVTGPPSDVDDFDKETWEDPLQVSCYAMHIFEYLKSREAEFQIKDYLPFQSSTEKGNINAEMRSVLVDWMVEVQETFELNHETLYLAVKLVDLYLGKVVCSRLNLQLLGATAIFVSSKFDDRIPPQLSDLEYICSHTYSIQDLKDMEIKLVTAIGFDLGIPLSYRFLRRYARCNRIQLPLLTLARYILELSLMEYSLIRESDSKLACASLYLAQKMNKLTPWNKTLEYYSEEKLY
*****IDMSM******************************************************PSDVDDFDKETWEDPLQVSCYAMHIFEYLKSREAEFQIKDYLPFQSSTEKGNINAEMRSVLVDWMVEVQETFELNHETLYLAVKLVDLYLGKVVCSRLNLQLLGATAIFVSSKFDDRIPPQLSDLEYICSHTYSIQDLKDMEIKLVTAIGFDLGIPLSYRFLRRYARCNRIQLPLLTLARYILELSLMEYSLIRESDSKLACASLYLAQKMNKLTPWNKTLEYYSEEKLY
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MDQHEIDMSMNLTNSNNKKAESQNSRKTVLKSKQTTVSEKKEKSLIEHFDKEIQLEDKPKVTGPPSDVDDFDKETWEDPLQVSCYAMHIFEYLKSREAEFQIKDYLPFQSSTEKGNINAEMRSVLVDWMVEVQETFELNHETLYLAVKLVDLYLGKVVCSRLNLQLLGATAIFVSSKFDDRIPPQLSDLEYICSHTYSIQDLKDMEIKLVTAIGFDLGIPLSYRFLRRYARCNRIQLPLLTLARYILELSLMEYSLIRESDSKLACASLYLAQKMNKLTPWNKTLEYYSEEKLY
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query294 2.2.26 [Sep-21-2011]
Q9I7I0575 G2/mitotic-specific cycli yes N/A 0.758 0.387 0.559 1e-69
P39963403 G2/mitotic-specific cycli yes N/A 0.738 0.538 0.513 2e-55
Q659K01330 G2/mitotic-specific cycli yes N/A 0.741 0.163 0.473 3e-54
Q810T21396 G2/mitotic-specific cycli yes N/A 0.874 0.184 0.371 2e-49
Q8WWL71395 G2/mitotic-specific cycli yes N/A 0.846 0.178 0.454 3e-49
Q10654385 G2/mitotic-specific cycli yes N/A 0.731 0.558 0.441 7e-48
P51987392 G2/mitotic-specific cycli N/A N/A 0.806 0.604 0.361 1e-38
P07818409 G2/mitotic-specific cycli N/A N/A 0.734 0.528 0.364 8e-37
O77689398 G2/mitotic-specific cycli no N/A 0.738 0.545 0.351 9e-37
Q1LZG6427 G2/mitotic-specific cycli no N/A 0.748 0.515 0.356 1e-36
>sp|Q9I7I0|CCNB3_DROME G2/mitotic-specific cyclin-B3 OS=Drosophila melanogaster GN=CycB3 PE=1 SV=1 Back     alignment and function desciption
 Score =  263 bits (672), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 132/236 (55%), Positives = 170/236 (72%), Gaps = 13/236 (5%)

Query: 65  PSDVDDFDKETWEDPLQVSCYAMHIFEYLKSREAEFQIKDYLPFQSSTEKGNINAEMRSV 124
           P +V+DFD++ W+DP QVS YAM IF YLK REAEF I DY+P Q      ++   MR++
Sbjct: 285 PEEVEDFDRKNWDDPFQVSHYAMDIFNYLKVREAEFPIADYMPRQI-----HLTTWMRTL 339

Query: 125 LVDWMVEVQETFELNHETLYLAVKLVDLYLGKVVCSRLNLQLLGATAIFVSSKFDDRIPP 184
           LVDWMVEVQETFELNHETLYLAVK+VDLYL + V ++  LQLLGA A F++ K+D+R PP
Sbjct: 340 LVDWMVEVQETFELNHETLYLAVKIVDLYLCREVINKEKLQLLGAAAFFIACKYDERQPP 399

Query: 185 QLSDLEYICSHTYSIQDLKDMEIKLVTAIGFDLGIPLSYRFLRRYARCNRIQLPLLTLAR 244
            + D  YIC   Y+  +L  ME + +  I +DLGIPLSYRFLRRYARC ++ +P LTLAR
Sbjct: 400 LIEDFLYICDGAYNHDELVRMERETLRVIKYDLGIPLSYRFLRRYARCAKVPMPTLTLAR 459

Query: 245 YILELSLMEYSLIRESDSKLACASLYLAQKM-------NKLTPWNKTLEYYSEEKL 293
           YILELSLM+Y+ I  SDS++A A+L++A +M       +K T W  TL YY+  +L
Sbjct: 460 YILELSLMDYANISFSDSQMASAALFMALRMHGGPGQLDKQT-WTSTLIYYTGYQL 514
Cyclins are positive regulatory subunits of the cyclin-dependent kinases (CDKs), and thereby play an essential role in the control of the cell cycle, notably via their destruction during cell division. Probably functions redundantly with other cyclins in regulation of cell cycle. Its presence may be required to delay a deadline for completing cytokinesis that is ordinary imposed by nuclear envelope reformation. Degradation of CycB and CycB3 promote cytokinesis furrow initiation and ingression. Required with CycB for female fertility.
Drosophila melanogaster (taxid: 7227)
>sp|P39963|CCNB3_CHICK G2/mitotic-specific cyclin-B3 OS=Gallus gallus GN=CCNB3 PE=2 SV=1 Back     alignment and function description
>sp|Q659K0|CCNB3_CANFA G2/mitotic-specific cyclin-B3 OS=Canis familiaris GN=CCNB3 PE=2 SV=1 Back     alignment and function description
>sp|Q810T2|CCNB3_MOUSE G2/mitotic-specific cyclin-B3 OS=Mus musculus GN=Ccnb3 PE=2 SV=2 Back     alignment and function description
>sp|Q8WWL7|CCNB3_HUMAN G2/mitotic-specific cyclin-B3 OS=Homo sapiens GN=CCNB3 PE=1 SV=2 Back     alignment and function description
>sp|Q10654|CCNB3_CAEEL G2/mitotic-specific cyclin-B3 OS=Caenorhabditis elegans GN=cyb-3 PE=2 SV=3 Back     alignment and function description
>sp|P51987|CCNB_HYDVD G2/mitotic-specific cyclin-B OS=Hydra viridissima PE=2 SV=1 Back     alignment and function description
>sp|P07818|CCNB_ARBPU G2/mitotic-specific cyclin-B OS=Arbacia punctulata PE=2 SV=1 Back     alignment and function description
>sp|O77689|CCNB2_BOVIN G2/mitotic-specific cyclin-B2 OS=Bos taurus GN=CCNB2 PE=2 SV=2 Back     alignment and function description
>sp|Q1LZG6|CCNB1_BOVIN G2/mitotic-specific cyclin-B1 OS=Bos taurus GN=CCNB1 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query294
157123632 573 cyclin B3 [Aedes aegypti] gi|108874327|g 0.761 0.390 0.558 8e-74
170057407 577 G2/mitotic-specific cyclin-B3 [Culex qui 0.761 0.388 0.554 4e-73
195112969 575 GI22195 [Drosophila mojavensis] gi|19391 0.935 0.478 0.501 9e-72
242017915 518 G2/mitotic-specific cyclin-B3, putative 0.846 0.480 0.534 1e-71
195055027 589 GH16367 [Drosophila grimshawi] gi|193892 0.921 0.460 0.505 1e-71
270006787 494 hypothetical protein TcasGA2_TC013167 [T 0.761 0.453 0.567 1e-71
189237775 497 PREDICTED: similar to GA19151-PA [Tribol 0.761 0.450 0.567 1e-71
195449848 583 GK22753 [Drosophila willistoni] gi|19416 0.761 0.384 0.565 2e-71
194742848 570 GF18004 [Drosophila ananassae] gi|190626 0.761 0.392 0.565 6e-71
357607465 460 cyclin 3 [Danaus plexippus] 0.802 0.513 0.556 2e-70
>gi|157123632|ref|XP_001660237.1| cyclin B3 [Aedes aegypti] gi|108874327|gb|EAT38552.1| AAEL009572-PA, partial [Aedes aegypti] Back     alignment and taxonomy information
 Score =  283 bits (723), Expect = 8e-74,   Method: Compositional matrix adjust.
 Identities = 128/229 (55%), Positives = 171/229 (74%), Gaps = 5/229 (2%)

Query: 65  PSDVDDFDKETWEDPLQVSCYAMHIFEYLKSREAEFQIKDYLPFQSSTEKGNINAEMRSV 124
           P  ++D+D   W D  QVS YA  IF+Y K REA+F I DY+P Q      +I+  MR++
Sbjct: 269 PEGIEDYDLSNWNDVFQVSHYAQDIFDYQKDREAQFVIPDYMPTQP-----HISKWMRAL 323

Query: 125 LVDWMVEVQETFELNHETLYLAVKLVDLYLGKVVCSRLNLQLLGATAIFVSSKFDDRIPP 184
           LVDWMVE+QE+FELNHETLYLAVK+VD+YL +    + +LQLLGA A+F++SK+D+R+PP
Sbjct: 324 LVDWMVEIQESFELNHETLYLAVKIVDIYLSRAEVQKDSLQLLGAAALFIASKYDERVPP 383

Query: 185 QLSDLEYICSHTYSIQDLKDMEIKLVTAIGFDLGIPLSYRFLRRYARCNRIQLPLLTLAR 244
            + D +YIC   Y  +++  MEI +   IG+DLGIPLSYRFLRRYAR NRI + +LTLAR
Sbjct: 384 TVDDFQYICDGAYQRREMILMEINVFKTIGYDLGIPLSYRFLRRYARVNRIDMQVLTLAR 443

Query: 245 YILELSLMEYSLIRESDSKLACASLYLAQKMNKLTPWNKTLEYYSEEKL 293
           YILE +LMEY+++   DSKLACA+L++A +MN +  WNKTLE+YS  K+
Sbjct: 444 YILEFTLMEYAIVGLRDSKLACAALFIAMRMNDMPGWNKTLEFYSGYKI 492

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|170057407|ref|XP_001864470.1| G2/mitotic-specific cyclin-B3 [Culex quinquefasciatus] gi|167876868|gb|EDS40251.1| G2/mitotic-specific cyclin-B3 [Culex quinquefasciatus] Back     alignment and taxonomy information
>gi|195112969|ref|XP_002001044.1| GI22195 [Drosophila mojavensis] gi|193917638|gb|EDW16505.1| GI22195 [Drosophila mojavensis] Back     alignment and taxonomy information
>gi|242017915|ref|XP_002429429.1| G2/mitotic-specific cyclin-B3, putative [Pediculus humanus corporis] gi|212514361|gb|EEB16691.1| G2/mitotic-specific cyclin-B3, putative [Pediculus humanus corporis] Back     alignment and taxonomy information
>gi|195055027|ref|XP_001994424.1| GH16367 [Drosophila grimshawi] gi|193892187|gb|EDV91053.1| GH16367 [Drosophila grimshawi] Back     alignment and taxonomy information
>gi|270006787|gb|EFA03235.1| hypothetical protein TcasGA2_TC013167 [Tribolium castaneum] Back     alignment and taxonomy information
>gi|189237775|ref|XP_971742.2| PREDICTED: similar to GA19151-PA [Tribolium castaneum] Back     alignment and taxonomy information
>gi|195449848|ref|XP_002072252.1| GK22753 [Drosophila willistoni] gi|194168337|gb|EDW83238.1| GK22753 [Drosophila willistoni] Back     alignment and taxonomy information
>gi|194742848|ref|XP_001953912.1| GF18004 [Drosophila ananassae] gi|190626949|gb|EDV42473.1| GF18004 [Drosophila ananassae] Back     alignment and taxonomy information
>gi|357607465|gb|EHJ65506.1| cyclin 3 [Danaus plexippus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query294
FB|FBgn0015625575 CycB3 "Cyclin B3" [Drosophila 0.884 0.452 0.503 5.4e-63
UNIPROTKB|P39963403 CCNB3 "G2/mitotic-specific cyc 0.931 0.679 0.440 6.8e-56
UNIPROTKB|K7GMP0329 CCNB3 "Uncharacterized protein 0.880 0.787 0.437 4.9e-53
UNIPROTKB|F1RW201338 CCNB3 "Uncharacterized protein 0.925 0.203 0.426 6.8e-52
UNIPROTKB|Q659K01330 CCNB3 "G2/mitotic-specific cyc 0.744 0.164 0.475 4.1e-51
UNIPROTKB|Q8WWL71395 CCNB3 "G2/mitotic-specific cyc 0.843 0.177 0.445 8.8e-51
UNIPROTKB|F1PYY21330 CCNB3 "G2/mitotic-specific cyc 0.744 0.164 0.471 1.8e-50
UNIPROTKB|G3N0U21276 Bt.83346 "Uncharacterized prot 0.704 0.162 0.485 1.8e-49
ZFIN|ZDB-GENE-060929-684401 ccnb3 "cyclin B3" [Danio rerio 0.935 0.685 0.414 9.8e-48
MGI|MGI:21834431396 Ccnb3 "cyclin B3" [Mus musculu 0.935 0.196 0.384 7.9e-47
FB|FBgn0015625 CycB3 "Cyclin B3" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 643 (231.4 bits), Expect = 5.4e-63, P = 5.4e-63
 Identities = 139/276 (50%), Positives = 187/276 (67%)

Query:    25 SRKTVLKSKQTTVSEKKEKSLIEHFDKEIQLEDKPKVTGPPSDVDDFDKETWEDPLQVSC 84
             +R+   K +Q T  E++ + L+    +    +  P +   P +V+DFD++ W+DP QVS 
Sbjct:   248 ARRRSAKLQQKT--EQQPQPLLLTLPETAPSQVVP-IPPVPEEVEDFDRKNWDDPFQVSH 304

Query:    85 YAMHIFEYLKSREAEFQIKDYLPFQSSTEKGNINAEMRSVLVDWMVEVQETFELNHETLY 144
             YAM IF YLK REAEF I DY+P Q      ++   MR++LVDWMVEVQETFELNHETLY
Sbjct:   305 YAMDIFNYLKVREAEFPIADYMPRQI-----HLTTWMRTLLVDWMVEVQETFELNHETLY 359

Query:   145 LAVKLVDLYLGKVVCSRLNLQLLGATAIFVSSKFDDRIPPQLSDLEYICSHTYSIQDLKD 204
             LAVK+VDLYL + V ++  LQLLGA A F++ K+D+R PP + D  YIC   Y+  +L  
Sbjct:   360 LAVKIVDLYLCREVINKEKLQLLGAAAFFIACKYDERQPPLIEDFLYICDGAYNHDELVR 419

Query:   205 MEIKLVTAIGFDLGIPLSYRFLRRYARCNRIQLPLLTLARYILELSLMEYSLIRESDSKL 264
             ME + +  I +DLGIPLSYRFLRRYARC ++ +P LTLARYILELSLM+Y+ I  SDS++
Sbjct:   420 MERETLRVIKYDLGIPLSYRFLRRYARCAKVPMPTLTLARYILELSLMDYANISFSDSQM 479

Query:   265 ACASLYLAQKMN-------KLTPWNKTLEYYSEEKL 293
             A A+L++A +M+       K T W  TL YY+  +L
Sbjct:   480 ASAALFMALRMHGGPGQLDKQT-WTSTLIYYTGYQL 514
GO:0016538 "cyclin-dependent protein serine/threonine kinase regulator activity" evidence=ISS
GO:0005515 "protein binding" evidence=IPI
GO:0005634 "nucleus" evidence=IDA
GO:0007052 "mitotic spindle organization" evidence=IMP
GO:0007067 "mitosis" evidence=IDA
GO:0000281 "cytokinesis after mitosis" evidence=IMP;IDA
GO:0019901 "protein kinase binding" evidence=IEA
GO:0000079 "regulation of cyclin-dependent protein serine/threonine kinase activity" evidence=IEA
GO:0010389 "regulation of G2/M transition of mitotic cell cycle" evidence=IEA
GO:0035186 "syncytial blastoderm mitotic cell cycle" evidence=IGI
GO:0035561 "regulation of chromatin binding" evidence=IGI
UNIPROTKB|P39963 CCNB3 "G2/mitotic-specific cyclin-B3" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|K7GMP0 CCNB3 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|F1RW20 CCNB3 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|Q659K0 CCNB3 "G2/mitotic-specific cyclin-B3" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|Q8WWL7 CCNB3 "G2/mitotic-specific cyclin-B3" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1PYY2 CCNB3 "G2/mitotic-specific cyclin-B3" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|G3N0U2 Bt.83346 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-060929-684 ccnb3 "cyclin B3" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
MGI|MGI:2183443 Ccnb3 "cyclin B3" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9I7I0CCNB3_DROMENo assigned EC number0.55930.75850.3878yesN/A
P39963CCNB3_CHICKNo assigned EC number0.51350.73800.5384yesN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query294
COG5024440 COG5024, COG5024, Cyclin [Cell division and chromo 2e-38
pfam00134127 pfam00134, Cyclin_N, Cyclin, N-terminal domain 6e-37
pfam02984117 pfam02984, Cyclin_C, Cyclin, C-terminal domain 5e-21
cd0004388 cd00043, CYCLIN, Cyclin box fold 2e-16
smart0038583 smart00385, CYCLIN, domain present in cyclins, TFI 1e-14
cd0004388 cd00043, CYCLIN, Cyclin box fold 4e-13
smart0038583 smart00385, CYCLIN, domain present in cyclins, TFI 5e-13
>gnl|CDD|227357 COG5024, COG5024, Cyclin [Cell division and chromosome partitioning] Back     alignment and domain information 
 Score =  139 bits (353), Expect = 2e-38
 Identities = 84/297 (28%), Positives = 135/297 (45%), Gaps = 24/297 (8%)

Query: 13  TNSNNKKAESQNSRKTVL---KSKQTT-----VSEKKEKSLIEHFDKEIQLEDKPKVTGP 64
           +  +N++A      +  L      Q T          +  L +  +     E        
Sbjct: 90  SGESNERARIPRLSECNLDSILFIQMTLNEDSYEPMIDYILKKDENSLSPYELDENQLAL 149

Query: 65  PSD----------VDDFDKETWEDPLQVSCYAMHIFEYLKSREAEF-QIKDYLPFQSSTE 113
                          D D    EDPL V  YA  IFEYL   E       +YL  QS   
Sbjct: 150 DEKQAESKRESQSWQDLDATDQEDPLMVPEYASDIFEYLLKLELIDLPNPNYLIKQS--- 206

Query: 114 KGNINAEMRSVLVDWMVEVQETFELNHETLYLAVKLVDLYLGKVVCSRLNLQLLGATAIF 173
                  MRS+LVDW+VEV   F L  ETL+LA+ ++D +L   V S    QL+G +A+F
Sbjct: 207 --LYEWSMRSILVDWLVEVHGKFGLLPETLFLAINIIDRFLSSRVVSLEKYQLVGISALF 264

Query: 174 VSSKFDDRIPPQLSDLEYICSHTYSIQDLKDMEIKLVTAIGFDLGIPLSYRFLRRYARCN 233
           ++SK+++   P + DL Y     ++  D+   E  ++  + F++  P    FLRR ++ +
Sbjct: 265 IASKYEEVNCPSIKDLVYATDGAFTRDDIIRAERYMLEVLDFNISWPSPMSFLRRISKAS 324

Query: 234 RIQLPLLTLARYILELSLMEYSLIRESDSKLACASLYLAQKMNKLTPWNKTLEYYSE 290
              +   T A++  E+S ++Y  I+ S S  A A++YL++K+     W++TL +YS 
Sbjct: 325 DYDIFSRTPAKFSSEISPVDYKFIQISPSWCAAAAMYLSRKILSQNQWDRTLIHYSG 381

Length = 440
>gnl|CDD|215740 pfam00134, Cyclin_N, Cyclin, N-terminal domain Back     alignment and domain information
>gnl|CDD|217307 pfam02984, Cyclin_C, Cyclin, C-terminal domain Back     alignment and domain information
>gnl|CDD|238003 cd00043, CYCLIN, Cyclin box fold Back     alignment and domain information
>gnl|CDD|214641 smart00385, CYCLIN, domain present in cyclins, TFIIB and Retinoblastoma Back     alignment and domain information
>gnl|CDD|238003 cd00043, CYCLIN, Cyclin box fold Back     alignment and domain information
>gnl|CDD|214641 smart00385, CYCLIN, domain present in cyclins, TFIIB and Retinoblastoma Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 294
KOG0653|consensus391 100.0
COG5024440 Cyclin [Cell division and chromosome partitioning] 100.0
KOG0654|consensus359 100.0
KOG0655|consensus408 100.0
KOG0656|consensus335 100.0
PF00134127 Cyclin_N: Cyclin, N-terminal domain; InterPro: IPR 99.94
TIGR00569305 ccl1 cyclin ccl1. University). 99.91
KOG0834|consensus323 99.83
COG5333297 CCL1 Cdk activating kinase (CAK)/RNA polymerase II 99.82
KOG0835|consensus 367 99.77
KOG0794|consensus264 99.7
PRK00423310 tfb transcription initiation factor IIB; Reviewed 99.63
cd0004388 CYCLIN Cyclin box fold. Protein binding domain fun 99.57
PF02984118 Cyclin_C: Cyclin, C-terminal domain; InterPro: IPR 99.5
smart0038583 CYCLIN domain present in cyclins, TFIIB and Retino 99.49
KOG2496|consensus325 99.41
COG1405285 SUA7 Transcription initiation factor TFIIIB, Brf1 99.26
KOG1597|consensus308 99.24
smart0038583 CYCLIN domain present in cyclins, TFIIB and Retino 98.84
cd0004388 CYCLIN Cyclin box fold. Protein binding domain fun 98.78
PF08613149 Cyclin: Cyclin; InterPro: IPR013922 Cyclins are eu 98.55
KOG1598|consensus 521 97.9
KOG4164|consensus497 97.73
PF0038271 TFIIB: Transcription factor TFIIB repeat; InterPro 97.17
PF0038271 TFIIB: Transcription factor TFIIB repeat; InterPro 97.11
PRK00423310 tfb transcription initiation factor IIB; Reviewed 96.11
KOG1674|consensus218 95.25
KOG1675|consensus343 94.4
PF00134127 Cyclin_N: Cyclin, N-terminal domain; InterPro: IPR 93.05
PF02984118 Cyclin_C: Cyclin, C-terminal domain; InterPro: IPR 91.01
COG1405285 SUA7 Transcription initiation factor TFIIIB, Brf1 89.31
PF09241106 Herp-Cyclin: Herpesviridae viral cyclin; InterPro: 83.64
KOG0834|consensus 323 81.61
TIGR00569 305 ccl1 cyclin ccl1. University). 81.52
>KOG0653|consensus Back     alignment and domain information 
Probab=100.00  E-value=2e-46  Score=357.36  Aligned_cols=220  Identities=40%  Similarity=0.633  Sum_probs=209.1

Q ss_pred             CCCCCCCCCCCCcchhhhHHHHHHHHHHHHhhCCCCCccCCCCCCCCCCCCHHHHHHHHHHHHHHHHHcCCChhHHHHHH
Q psy18159         68 VDDFDKETWEDPLQVSCYAMHIFEYLKSREAEFQIKDYLPFQSSTEKGNINAEMRSVLVDWMVEVQETFELNHETLYLAV  147 (294)
Q Consensus        68 ~~~~d~~~~~~p~~~~eY~~dI~~~l~~~E~~~~~~~yl~~q~~~~~~~i~~~~R~~lvdWl~~v~~~~~l~~eTl~lAv  147 (294)
                      +.|+|..+..+|.++.||++|||.|++.+|..+.+..|+..+.     +++..||++++|||++||.+|+|.+||+|+||
T Consensus       109 ~~dl~~~d~~~~~~~~ey~~di~~~l~~~e~~~~p~~~~~~~~-----e~~~~mR~iLvdwlvevh~~F~L~~ETL~LaV  183 (391)
T KOG0653|consen  109 ILDLDSEDKSDPSMIVEYVQDIFEYLRQLELEFLPLSYDISQS-----EIRAKMRAILVDWLVEVHEKFGLSPETLYLAV  183 (391)
T ss_pred             ccCcchhcccCcHHHHHHHHHHHHHHHHHHHhhCchhhhcccc-----cccHHHHHHHHHHHHHhhhhcCcCHHHHHHHH
Confidence            7788999999999999999999999999995444444556666     99999999999999999999999999999999


Q ss_pred             HHHHHHhhhccccccchhhhhhhhhh-hhccCCCCCCCChhhHHhhhcCCcCHHHHHHHHHHHHHHhCCCCCCCChHHHH
Q psy18159        148 KLVDLYLGKVVCSRLNLQLLGATAIF-VSSKFDDRIPPQLSDLEYICSHTYSIQDLKDMEIKLVTAIGFDLGIPLSYRFL  226 (294)
Q Consensus       148 ~ilDRfls~~~v~~~~lqLvg~acL~-IAsK~eE~~~~~i~dl~~i~~~~yt~~~i~~mE~~IL~~L~f~l~~ptp~~Fl  226 (294)
                      +++||||++..|++.++||+|++||| ||||+||..+|.+.|++++++++||+++|++||+.||++|+|+++.|+|+.||
T Consensus       184 nliDRfL~~~~v~~~~lqLvgvsalf~IA~K~EE~~~P~v~dlv~isd~~~s~~~il~mE~~il~~L~f~l~~p~~~~FL  263 (391)
T KOG0653|consen  184 NLIDRFLSKVKVPLKKLQLVGVSALLSIACKYEEISLPSVEDLVLITDGAYSREEILRMEKYILNVLEFDLSVPTPLSFL  263 (391)
T ss_pred             HHHHHHHHHhcccHHHhhHHhHHHHHHHHHhhhhccCCccceeEeeeCCccchHHHHHHHHHHHhccCeeecCCchHHHH
Confidence            99999999999999999999999976 99999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCChhHHHHHHHHHHHHhcchhccCCcHHHHHHHHHHHHHHhcCCCC-ChHHHHHhcCcc
Q psy18159        227 RRYARCNRIQLPLLTLARYILELSLMEYSLIRESDSKLACASLYLAQKMNKLTP-WNKTLEYYSEEK  292 (294)
Q Consensus       227 ~~~~~~~~~~~~~~~la~~llel~l~d~~~l~~~PS~iAaAal~lA~~~~~~~~-W~~~L~~~sgY~  292 (294)
                      ++|.++...+...+.++++++|++++|+.++.++||.+|+|++++++.+...+. |+.++.+||||+
T Consensus       264 rr~~ka~~~d~~~~~~~k~~~El~l~d~~~~~~~~s~~aaa~~~~~~~~~~~~~~w~~~~~~~sg~~  330 (391)
T KOG0653|consen  264 RRFLKAADYDIKTRTLVKYLLELSLCDYSMLSIPPSSSAAASFTLALRMLSKGDVWSPTLEHYSGYS  330 (391)
T ss_pred             HHHHHhhhcchhHHHHHHHHHHHHHhhhHHhccCcHHHHHHHHHHHHHHhccCCccCCCCeeccCCC
Confidence            999999999999999999999999999999999999999999999999999885 999999999985

>COG5024 Cyclin [Cell division and chromosome partitioning] Back     alignment and domain information
>KOG0654|consensus Back     alignment and domain information
>KOG0655|consensus Back     alignment and domain information
>KOG0656|consensus Back     alignment and domain information
>PF00134 Cyclin_N: Cyclin, N-terminal domain; InterPro: IPR006671 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs) Back     alignment and domain information
>TIGR00569 ccl1 cyclin ccl1 Back     alignment and domain information
>KOG0834|consensus Back     alignment and domain information
>COG5333 CCL1 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH/TFIIK, cyclin H subunit [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair] Back     alignment and domain information
>KOG0835|consensus Back     alignment and domain information
>KOG0794|consensus Back     alignment and domain information
>PRK00423 tfb transcription initiation factor IIB; Reviewed Back     alignment and domain information
>cd00043 CYCLIN Cyclin box fold Back     alignment and domain information
>PF02984 Cyclin_C: Cyclin, C-terminal domain; InterPro: IPR004367 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs) Back     alignment and domain information
>smart00385 CYCLIN domain present in cyclins, TFIIB and Retinoblastoma Back     alignment and domain information
>KOG2496|consensus Back     alignment and domain information
>COG1405 SUA7 Transcription initiation factor TFIIIB, Brf1 subunit/Transcription initiation factor TFIIB [Transcription] Back     alignment and domain information
>KOG1597|consensus Back     alignment and domain information
>smart00385 CYCLIN domain present in cyclins, TFIIB and Retinoblastoma Back     alignment and domain information
>cd00043 CYCLIN Cyclin box fold Back     alignment and domain information
>PF08613 Cyclin: Cyclin; InterPro: IPR013922 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs) Back     alignment and domain information
>KOG1598|consensus Back     alignment and domain information
>KOG4164|consensus Back     alignment and domain information
>PF00382 TFIIB: Transcription factor TFIIB repeat; InterPro: IPR013150 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs) Back     alignment and domain information
>PF00382 TFIIB: Transcription factor TFIIB repeat; InterPro: IPR013150 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs) Back     alignment and domain information
>PRK00423 tfb transcription initiation factor IIB; Reviewed Back     alignment and domain information
>KOG1674|consensus Back     alignment and domain information
>KOG1675|consensus Back     alignment and domain information
>PF00134 Cyclin_N: Cyclin, N-terminal domain; InterPro: IPR006671 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs) Back     alignment and domain information
>PF02984 Cyclin_C: Cyclin, C-terminal domain; InterPro: IPR004367 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs) Back     alignment and domain information
>COG1405 SUA7 Transcription initiation factor TFIIIB, Brf1 subunit/Transcription initiation factor TFIIB [Transcription] Back     alignment and domain information
>PF09241 Herp-Cyclin: Herpesviridae viral cyclin; InterPro: IPR015322 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs) Back     alignment and domain information
>KOG0834|consensus Back     alignment and domain information
>TIGR00569 ccl1 cyclin ccl1 Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query294
2b9r_A269 Crystal Structure Of Human Cyclin B1 Length = 269 4e-34
2jgz_B260 Crystal Structure Of Phospho-Cdk2 In Complex With C 1e-33
3qhr_B261 Structure Of A Pcdk2CYCLINA TRANSITION-State Mimic 1e-21
3dog_B264 Structure Of Thr 160 Phosphorylated Cdk2CYCLIN A IN 1e-21
3ddq_B269 Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN 2e-21
3ddp_B268 Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN 2e-21
3bht_B262 Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN 2e-21
2g9x_B262 Structure Of Thr 160 Phosphorylated Cdk2CYCLIN A IN 2e-21
1vin_A268 Bovine Cyclin A3 Length = 268 2e-21
4bcq_D262 Structure Of Cdk2 In Complex With Cyclin A And A 2- 2e-21
4ii5_B258 Structure Of Pcdk2/cyclina Bound To Adp And 1 Magne 2e-21
1ogu_B260 Structure Of Human Thr160-phospho Cdk2/cyclin A Com 2e-21
4bcq_B262 Structure Of Cdk2 In Complex With Cyclin A And A 2- 2e-21
4i3z_B257 Structure Of Pcdk2CYCLINA BOUND TO ADP AND 2 MAGNES 2e-21
4bco_B262 Structure Of Cdk2 In Complex With Cyclin A And A 2- 2e-21
1vyw_B265 Structure Of Cdk2CYCLIN A WITH PNU-292137 Length = 3e-21
1qmz_B259 Phosphorylated Cdk2-Cyclyin A-Substrate Peptide Com 3e-21
1fin_B260 Cyclin A-Cyclin-Dependent Kinase 2 Complex Length = 3e-21
2x1n_B261 Truncation And Optimisation Of Peptide Inhibitors O 3e-21
1jst_B258 Phosphorylated Cyclin-Dependent Kinase-2 Bound To C 5e-21
3f5x_B256 Cdk-2-Cyclin Complex With Indazole Inhibitor 9 Boun 5e-21
1e9h_B261 Thr 160 Phosphorylated Cdk2-Human Cyclin A3 Complex 6e-21
1w98_B283 The Structural Basis Of Cdk2 Activation By Cyclin E 4e-11
3g33_B306 Crystal Structure Of Cdk4CYCLIN D3 Length = 306 1e-09
1jow_A254 Crystal Structure Of A Complex Of Human Cdk6 And A 1e-08
1bu2_A229 X-Ray Structure Of A Viral Cyclin From Herpesvirus 1e-08
2w9z_A257 Crystal Structure Of Cdk4 In Complex With A D-Type 2e-06
2w96_A271 Crystal Structure Of Cdk4 In Complex With A D-Type 2e-06
>pdb|2B9R|A Chain A, Crystal Structure Of Human Cyclin B1 Length = 269 Back     alignment and structure 
Iteration: 1

 Score =  141 bits (355), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 73/215 (33%), Positives = 129/215 (60%), Gaps = 10/215 (4%)
Query: 83  SCYAMHIFEYLKSREAEFQIK-DYLPFQSSTEKGNINAEMRSVLVDWMVEVQETFELNHE 141
           S Y   I+ YL+  EA   ++  YL  +  T  GN    MR++L+DW+V+VQ  F L  E
Sbjct: 4   SEYVKDIYAYLRQLEAAQAVRPKYLLGREVT--GN----MRAILIDWLVQVQMKFRLLQE 57
Query: 142 TLYLAVKLVDLYLGKVVCSRLNLQLLGATAIFVSSKFDDRIPPQLSDLEYICSHTYSIQD 201
           T+Y+ V ++D ++      +  LQL+G TA+F++SK+++  PP++ D  ++  +TY+   
Sbjct: 58  TMYMTVSIIDRFMQNNSVPKKMLQLVGVTAMFIASKYEEMYPPEIGDFAFVTDNTYTKHQ 117
Query: 202 LKDMEIKLVTAIGFDLGIPLSYRFLRRYARCNRIQLPLLTLARYILELSLMEYSLIRESD 261
           ++ ME+K++ A+ F LG PL   FLRR ++   + +   TLA+Y++EL++++Y ++    
Sbjct: 118 IRQMEMKILRALNFGLGRPLPLHFLRRASKIGEVDVEQHTLAKYLMELTMLDYDMVHFPP 177
Query: 262 SKLACASLYLAQKMNKLTPWNKTLEY---YSEEKL 293
           S++A  +  LA K+     W  TL++   Y+EE L
Sbjct: 178 SQIAAGAFSLALKILDNGEWTPTLQHYLSYTEESL 212
>pdb|2JGZ|B Chain B, Crystal Structure Of Phospho-Cdk2 In Complex With Cyclin B Length = 260 Back     alignment and structure
>pdb|3QHR|B Chain B, Structure Of A Pcdk2CYCLINA TRANSITION-State Mimic Length = 261 Back     alignment and structure
>pdb|3DOG|B Chain B, Structure Of Thr 160 Phosphorylated Cdk2CYCLIN A IN Complex With The Inhibitor N-&-N1 Length = 264 Back     alignment and structure
>pdb|3DDQ|B Chain B, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX With The Inhibitor Roscovitine Length = 269 Back     alignment and structure
>pdb|3DDP|B Chain B, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX With The Inhibitor Cr8 Length = 268 Back     alignment and structure
>pdb|3BHT|B Chain B, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX WITH THE Inhibitor Meriolin 3 Length = 262 Back     alignment and structure
>pdb|2G9X|B Chain B, Structure Of Thr 160 Phosphorylated Cdk2CYCLIN A IN COMPLEX WITH THE Inhibitor Nu6271 Length = 262 Back     alignment and structure
>pdb|1VIN|A Chain A, Bovine Cyclin A3 Length = 268 Back     alignment and structure
>pdb|4BCQ|D Chain D, Structure Of Cdk2 In Complex With Cyclin A And A 2-amino-4- Heteroaryl-pyrimidine Inhibitor Length = 262 Back     alignment and structure
>pdb|4II5|B Chain B, Structure Of Pcdk2/cyclina Bound To Adp And 1 Magnesium Ion Length = 258 Back     alignment and structure
>pdb|1OGU|B Chain B, Structure Of Human Thr160-phospho Cdk2/cyclin A Complexed With A 2-arylamino-4-cyclohexylmethyl-5-nitroso-6- aminopyrimidine Inhibitor Length = 260 Back     alignment and structure
>pdb|4BCQ|B Chain B, Structure Of Cdk2 In Complex With Cyclin A And A 2-amino-4- Heteroaryl-pyrimidine Inhibitor Length = 262 Back     alignment and structure
>pdb|4I3Z|B Chain B, Structure Of Pcdk2CYCLINA BOUND TO ADP AND 2 MAGNESIUM IONS Length = 257 Back     alignment and structure
>pdb|4BCO|B Chain B, Structure Of Cdk2 In Complex With Cyclin A And A 2-amino-4- Heteroaryl-pyrimidine Inhibitor Length = 262 Back     alignment and structure
>pdb|1VYW|B Chain B, Structure Of Cdk2CYCLIN A WITH PNU-292137 Length = 265 Back     alignment and structure
>pdb|1QMZ|B Chain B, Phosphorylated Cdk2-Cyclyin A-Substrate Peptide Complex Length = 259 Back     alignment and structure
>pdb|1FIN|B Chain B, Cyclin A-Cyclin-Dependent Kinase 2 Complex Length = 260 Back     alignment and structure
>pdb|2X1N|B Chain B, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2, Cyclin A Through Structure Guided Design Length = 261 Back     alignment and structure
>pdb|1JST|B Chain B, Phosphorylated Cyclin-Dependent Kinase-2 Bound To Cyclin A Length = 258 Back     alignment and structure
>pdb|3F5X|B Chain B, Cdk-2-Cyclin Complex With Indazole Inhibitor 9 Bound At Its Active Site Length = 256 Back     alignment and structure
>pdb|1E9H|B Chain B, Thr 160 Phosphorylated Cdk2-Human Cyclin A3 Complex With The Inhibitor Indirubin-5-Sulphonate Bound Length = 261 Back     alignment and structure
>pdb|1W98|B Chain B, The Structural Basis Of Cdk2 Activation By Cyclin E Length = 283 Back     alignment and structure
>pdb|3G33|B Chain B, Crystal Structure Of Cdk4CYCLIN D3 Length = 306 Back     alignment and structure
>pdb|1JOW|A Chain A, Crystal Structure Of A Complex Of Human Cdk6 And A Viral Cyclin Length = 254 Back     alignment and structure
>pdb|1BU2|A Chain A, X-Ray Structure Of A Viral Cyclin From Herpesvirus Saimiri Length = 229 Back     alignment and structure
>pdb|2W9Z|A Chain A, Crystal Structure Of Cdk4 In Complex With A D-Type Cyclin Length = 257 Back     alignment and structure
>pdb|2W96|A Chain A, Crystal Structure Of Cdk4 In Complex With A D-Type Cyclin Length = 271 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query294
2b9r_A269 Human cyclin B1; cell cycle; 2.90A {Homo sapiens} 5e-79
2f2c_A254 Cyclin homolog, V-cyclin; small molecule inhibitor 2e-78
2cch_B260 Cyclin A2, cyclin-A; complex(transferase/cell divi 2e-76
1w98_B283 Cyclin E, G1/S-specific cyclin E1; cell cycle, tra 3e-71
3g33_B306 CCND3 protein; Ser/Thr protein kinase, cell cycle, 4e-70
2w96_A271 G1/S-specific cyclin-D1; serine/threonine-protein 9e-70
1g3n_C257 V-cyclin; cyclin-dependent kinase, INK4 inhibitor, 6e-67
1f5q_B252 Gamma herpesvirus cyclin; herpesviral cyclin, cycl 5e-63
2i53_A258 Cyclin K; cell cycle, transcription, cyclin BOX, C 6e-14
1zp2_A235 RNA polymerase II holoenzyme cyclin-like subunit; 4e-11
2ivx_A257 Cyclin-T2; transcription regulation, cell division 3e-07
2pk2_A 358 Cyclin-T1, protein TAT; TAR, twinning, transcripti 4e-07
1jkw_A323 Cyclin H; cell cycle, cell division, nuclear prote 3e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-06
3rgf_B285 Cyclin-C; protein kinase complex, transferase,tran 1e-04
>2b9r_A Human cyclin B1; cell cycle; 2.90A {Homo sapiens} PDB: 2jgz_B* Length = 269 Back     alignment and structure
 Score =  239 bits (613), Expect = 5e-79
 Identities = 65/208 (31%), Positives = 120/208 (57%), Gaps = 5/208 (2%)

Query: 82  VSCYAMHIFEYLKSREAEFQIKDYLPFQSSTEKGNINAEMRSVLVDWMVEVQETFELNHE 141
            S Y   I+ YL+  EA   ++             +   MR++L+DW+V+VQ  F L  E
Sbjct: 3   SSEYVKDIYAYLRQLEAAQAVRPKYLLGR-----EVTGNMRAILIDWLVQVQMKFRLLQE 57

Query: 142 TLYLAVKLVDLYLGKVVCSRLNLQLLGATAIFVSSKFDDRIPPQLSDLEYICSHTYSIQD 201
           T+Y+ V ++D ++      +  LQL+G TA+F++SK+++  PP++ D  ++  +TY+   
Sbjct: 58  TMYMTVSIIDRFMQNNSVPKKMLQLVGVTAMFIASKYEEMYPPEIGDFAFVTDNTYTKHQ 117

Query: 202 LKDMEIKLVTAIGFDLGIPLSYRFLRRYARCNRIQLPLLTLARYILELSLMEYSLIRESD 261
           ++ ME+K++ A+ F LG PL   FLRR ++   + +   TLA+Y++EL++++Y ++    
Sbjct: 118 IRQMEMKILRALNFGLGRPLPLHFLRRASKIGEVDVEQHTLAKYLMELTMLDYDMVHFPP 177

Query: 262 SKLACASLYLAQKMNKLTPWNKTLEYYS 289
           S++A  +  LA K+     W  TL++Y 
Sbjct: 178 SQIAAGAFSLALKILDNGEWTPTLQHYL 205
>2f2c_A Cyclin homolog, V-cyclin; small molecule inhibitor bound between N-terminal and C-TERM domain of kinase, cell cycle-transferase complex; HET: AP9; 2.80A {Herpesvirus saimiri} SCOP: a.74.1.1 a.74.1.1 PDB: 1jow_A* 2euf_A* 1xo2_A* 1bu2_A Length = 254 Back     alignment and structure
>2cch_B Cyclin A2, cyclin-A; complex(transferase/cell division), ATP-binding, CDK2, cell cycle, cyclin, mitosis, nuclear protein; HET: TPO ATP; 1.7A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1fvv_B* 1jsu_B* 1okv_B 1okw_B* 1ol1_B* 1ol2_B* 1urc_B 1fin_B* 2c5p_B* 2c5o_B* 2i40_B* 2wev_B* 2wfy_B 2whb_B* 3eid_B* 3ej1_B* 3eoc_B* 2wha_B* 2x1n_B* 1vyw_B* ... Length = 260 Back     alignment and structure
>1w98_B Cyclin E, G1/S-specific cyclin E1; cell cycle, transferase; HET: TPO; 2.15A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 Length = 283 Back     alignment and structure
>3g33_B CCND3 protein; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens} Length = 306 Back     alignment and structure
>2w96_A G1/S-specific cyclin-D1; serine/threonine-protein kinase, chromosomal rearrangement, ATP-binding, transferase, polymorphism, cell division; 2.30A {Homo sapiens} PDB: 2w99_A 2w9f_A 2w9z_A Length = 271 Back     alignment and structure
>1g3n_C V-cyclin; cyclin-dependent kinase, INK4 inhibitor, viral cyclin, cell cycle, signaling protein; 2.90A {Human herpesvirus 8} SCOP: a.74.1.1 a.74.1.1 Length = 257 Back     alignment and structure
>1f5q_B Gamma herpesvirus cyclin; herpesviral cyclin, cyclin dependent kinase. protein/protein complex, transferase; 2.50A {Murid herpesvirus 4} SCOP: a.74.1.1 a.74.1.1 Length = 252 Back     alignment and structure
>2i53_A Cyclin K; cell cycle, transcription, cyclin BOX, CDK9, positive transcription elongation factor, P-TEFB; 1.50A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 Length = 258 Back     alignment and structure
>1zp2_A RNA polymerase II holoenzyme cyclin-like subunit; cyclin repeat domains, transcription-cell cycle complex; 3.00A {Schizosaccharomyces pombe} Length = 235 Back     alignment and structure
>2ivx_A Cyclin-T2; transcription regulation, cell division, phosphorylation, NU protein, cell cycle, transcription; 1.8A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_A 3mi9_B* 3mia_B* 3tnh_B* 3tni_B* 3blh_B* 3blq_B* 3blr_B* 3lq5_B* 3my1_B* 3tn8_B* Length = 257 Back     alignment and structure
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C Length = 358 Back     alignment and structure
>1jkw_A Cyclin H; cell cycle, cell division, nuclear protein; 2.60A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1kxu_A Length = 323 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>3rgf_B Cyclin-C; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens} Length = 285 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query294
2cch_B260 Cyclin A2, cyclin-A; complex(transferase/cell divi 100.0
2b9r_A269 Human cyclin B1; cell cycle; 2.90A {Homo sapiens} 100.0
2f2c_A254 Cyclin homolog, V-cyclin; small molecule inhibitor 100.0
1g3n_C257 V-cyclin; cyclin-dependent kinase, INK4 inhibitor, 100.0
3g33_B306 CCND3 protein; Ser/Thr protein kinase, cell cycle, 100.0
1f5q_B252 Gamma herpesvirus cyclin; herpesviral cyclin, cycl 100.0
1w98_B283 Cyclin E, G1/S-specific cyclin E1; cell cycle, tra 100.0
2w96_A271 G1/S-specific cyclin-D1; serine/threonine-protein 100.0
2i53_A258 Cyclin K; cell cycle, transcription, cyclin BOX, C 100.0
2ivx_A257 Cyclin-T2; transcription regulation, cell division 100.0
1zp2_A235 RNA polymerase II holoenzyme cyclin-like subunit; 100.0
3rgf_B285 Cyclin-C; protein kinase complex, transferase,tran 100.0
2pk2_A 358 Cyclin-T1, protein TAT; TAR, twinning, transcripti 100.0
1jkw_A323 Cyclin H; cell cycle, cell division, nuclear prote 99.98
1c9b_A207 General transcription factor IIB; protein-DNA comp 99.96
1ais_B200 TFB TFIIB, protein (transcription initiation facto 99.92
3k7a_M345 Transcription initiation factor IIB; RNA polymeras 99.81
4bbr_M345 Transcription initiation factor IIB; RNA polymeras 99.48
2pmi_B293 PHO85 cyclin PHO80, aminoglycoside anti; cyclin-de 98.28
1ais_B200 TFB TFIIB, protein (transcription initiation facto 97.22
1c9b_A 207 General transcription factor IIB; protein-DNA comp 95.79
1zp2_A 235 RNA polymerase II holoenzyme cyclin-like subunit; 92.42
4bbr_M 345 Transcription initiation factor IIB; RNA polymeras 91.35
2ivx_A 257 Cyclin-T2; transcription regulation, cell division 90.39
2i53_A 258 Cyclin K; cell cycle, transcription, cyclin BOX, C 89.19
3h4c_A260 Transcription factor TFIIB-like; cyclin, transcrip 88.97
3rgf_B 285 Cyclin-C; protein kinase complex, transferase,tran 88.7
2pk2_A 358 Cyclin-T1, protein TAT; TAR, twinning, transcripti 87.76
1jkw_A 323 Cyclin H; cell cycle, cell division, nuclear prote 87.65
2f2c_A254 Cyclin homolog, V-cyclin; small molecule inhibitor 87.37
1g3n_C257 V-cyclin; cyclin-dependent kinase, INK4 inhibitor, 86.49
3k7a_M 345 Transcription initiation factor IIB; RNA polymeras 86.06
2w96_A 271 G1/S-specific cyclin-D1; serine/threonine-protein 86.05
2b9r_A 269 Human cyclin B1; cell cycle; 2.90A {Homo sapiens} 85.8
2cch_B 260 Cyclin A2, cyclin-A; complex(transferase/cell divi 82.43
3m03_A95 ORC6, origin recognition complex subunit 6; helix 82.32
>2cch_B Cyclin A2, cyclin-A; complex(transferase/cell division), ATP-binding, CDK2, cell cycle, cyclin, mitosis, nuclear protein; HET: TPO ATP; 1.7A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1fvv_B* 1jsu_B* 1okv_B 1okw_B* 1ol1_B* 1ol2_B* 1urc_B 1fin_B* 2c5p_B* 2c5o_B* 2i40_B* 2wev_B* 2wfy_B 2whb_B* 3eid_B* 3ej1_B* 3eoc_B* 2wha_B* 2x1n_B* 1vyw_B* ... Back     alignment and structure
Probab=100.00  E-value=3.3e-50  Score=363.29  Aligned_cols=208  Identities=32%  Similarity=0.509  Sum_probs=200.1

Q ss_pred             chhhhHHHHHHHHHHHHhhC-CCCCccCCCCCCCCCCCCHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHhhhccc
Q psy18159         81 QVSCYAMHIFEYLKSREAEF-QIKDYLPFQSSTEKGNINAEMRSVLVDWMVEVQETFELNHETLYLAVKLVDLYLGKVVC  159 (294)
Q Consensus        81 ~~~eY~~dI~~~l~~~E~~~-~~~~yl~~q~~~~~~~i~~~~R~~lvdWl~~v~~~~~l~~eTl~lAv~ilDRfls~~~v  159 (294)
                      .|+||++|||+||+++|.++ |.++|+..|+     ++++.||.+++|||++++..|+++++|+++|++|+|||+++.++
T Consensus         2 ~~~eY~~di~~~l~~~E~~~~p~~~y~~~q~-----~i~~~~R~~lvdwl~~v~~~~~l~~~tl~lAv~~lDRfls~~~v   76 (260)
T 2cch_B            2 EVPDYHEDIHTYLREMEVKCKPKVGYMKKQP-----DITNSMRAILVDWLVEVGEEYKLQNETLHLAVNYIDRFLSSMSV   76 (260)
T ss_dssp             CCCTTHHHHHHHHHHHHHHTCCCTTGGGGCS-----SCCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCCC
T ss_pred             chHhHHHHHHHHHHHHHhhcCCCchhhhcCC-----CCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhccCCC
Confidence            36799999999999999986 6689999998     99999999999999999999999999999999999999999999


Q ss_pred             cccchhhhhhhhhhhhccCCCCCCCChhhHHhhhcCCcCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHcCCCh-h
Q psy18159        160 SRLNLQLLGATAIFVSSKFDDRIPPQLSDLEYICSHTYSIQDLKDMEIKLVTAIGFDLGIPLSYRFLRRYARCNRIQL-P  238 (294)
Q Consensus       160 ~~~~lqLvg~acL~IAsK~eE~~~~~i~dl~~i~~~~yt~~~i~~mE~~IL~~L~f~l~~ptp~~Fl~~~~~~~~~~~-~  238 (294)
                      .+.++|++|+||||||||+||..||+++|+++++++.|++++|.+||+.||++|+|+++.|||++|+++|++..+.+. +
T Consensus        77 ~~~~lqlv~~acl~iA~K~ee~~~~~~~d~~~i~~~~~~~~~i~~mE~~iL~~L~~~l~~~tp~~fl~~~~~~l~~~~~~  156 (260)
T 2cch_B           77 LRGKLQLVGTAAMLLASKFEEIYPPEVAEFVYITDDTYTKKQVLRMEHLVLKVLTFDLAAPTVNQFLTQYFLHQQPANCK  156 (260)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHCSSCCCHHHHHHHTTSSSCHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHTTCSSCCHH
T ss_pred             CHHHHhHHHHHHHHHHHHhcccCCCCHHHHHHHHcCCcCHHHHHHHHHHHHHHcCCccCCCCHHHHHHHHHHHcCCChHH
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999988765 7


Q ss_pred             HHHHHHHHHHHHhcchh-ccCCcHHHHHHHHHHHHHHhcCCCCChHHHHHhcCccc
Q psy18159        239 LLTLARYILELSLMEYS-LIRESDSKLACASLYLAQKMNKLTPWNKTLEYYSEEKL  293 (294)
Q Consensus       239 ~~~la~~llel~l~d~~-~l~~~PS~iAaAal~lA~~~~~~~~W~~~L~~~sgY~~  293 (294)
                      +..+|++++++++.|+. +++|+||.|||||+++|+.+++.+.|.+.|+++|||+.
T Consensus       157 ~~~~a~~l~e~sl~~~~~~~~~~Ps~iAaAai~lA~~~~~~~~w~~~l~~~~g~~~  212 (260)
T 2cch_B          157 VESLAMFLGELSLIDADPYLKYLPSVIAGAAFHLALYTVTGQSWPESLIRKTGYTL  212 (260)
T ss_dssp             HHHHHHHHHHHHHHCHHHHTTSCHHHHHHHHHHHHHHHHHSCCSCHHHHHHHCCCH
T ss_pred             HHHHHHHHHHHHHHhHHHHhCCCHHHHHHHHHHHHHHHhCCCcchHHHHHHhCcCH
Confidence            89999999999999999 99999999999999999999988999999999999974
>2b9r_A Human cyclin B1; cell cycle; 2.90A {Homo sapiens} PDB: 2jgz_B* Back     alignment and structure
>2f2c_A Cyclin homolog, V-cyclin; small molecule inhibitor bound between N-terminal and C-TERM domain of kinase, cell cycle-transferase complex; HET: AP9; 2.80A {Herpesvirus saimiri} SCOP: a.74.1.1 a.74.1.1 PDB: 1jow_A* 2euf_A* 1xo2_A* 1bu2_A Back     alignment and structure
>1g3n_C V-cyclin; cyclin-dependent kinase, INK4 inhibitor, viral cyclin, cell cycle, signaling protein; 2.90A {Human herpesvirus 8} SCOP: a.74.1.1 a.74.1.1 Back     alignment and structure
>3g33_B CCND3 protein; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens} Back     alignment and structure
>1f5q_B Gamma herpesvirus cyclin; herpesviral cyclin, cyclin dependent kinase. protein/protein complex, transferase; 2.50A {Murid herpesvirus 4} SCOP: a.74.1.1 a.74.1.1 Back     alignment and structure
>1w98_B Cyclin E, G1/S-specific cyclin E1; cell cycle, transferase; HET: TPO; 2.15A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 Back     alignment and structure
>2w96_A G1/S-specific cyclin-D1; serine/threonine-protein kinase, chromosomal rearrangement, ATP-binding, transferase, polymorphism, cell division; 2.30A {Homo sapiens} PDB: 2w99_A 2w9f_A 2w9z_A Back     alignment and structure
>2i53_A Cyclin K; cell cycle, transcription, cyclin BOX, CDK9, positive transcription elongation factor, P-TEFB; 1.50A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 Back     alignment and structure
>2ivx_A Cyclin-T2; transcription regulation, cell division, phosphorylation, NU protein, cell cycle, transcription; 1.8A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_A 3mi9_B* 3mia_B* 3tnh_B* 3tni_B* 3blh_B* 3blq_B* 3blr_B* 3lq5_B* 3my1_B* 3tn8_B* Back     alignment and structure
>1zp2_A RNA polymerase II holoenzyme cyclin-like subunit; cyclin repeat domains, transcription-cell cycle complex; 3.00A {Schizosaccharomyces pombe} Back     alignment and structure
>3rgf_B Cyclin-C; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens} Back     alignment and structure
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C Back     alignment and structure
>1jkw_A Cyclin H; cell cycle, cell division, nuclear protein; 2.60A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1kxu_A Back     alignment and structure
>1c9b_A General transcription factor IIB; protein-DNA complex, cyclin-like fold, helix-turn-helix, transcription/DNA complex; 2.65A {Homo sapiens} SCOP: a.74.1.2 a.74.1.2 PDB: 1tfb_A 2phg_A 1vol_A* Back     alignment and structure
>1ais_B TFB TFIIB, protein (transcription initiation factor IIB); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: a.74.1.2 a.74.1.2 PDB: 1d3u_B* Back     alignment and structure
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae} Back     alignment and structure
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M Back     alignment and structure
>2pmi_B PHO85 cyclin PHO80, aminoglycoside anti; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_B* Back     alignment and structure
>1ais_B TFB TFIIB, protein (transcription initiation factor IIB); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: a.74.1.2 a.74.1.2 PDB: 1d3u_B* Back     alignment and structure
>1c9b_A General transcription factor IIB; protein-DNA complex, cyclin-like fold, helix-turn-helix, transcription/DNA complex; 2.65A {Homo sapiens} SCOP: a.74.1.2 a.74.1.2 PDB: 1tfb_A 2phg_A 1vol_A* Back     alignment and structure
>1zp2_A RNA polymerase II holoenzyme cyclin-like subunit; cyclin repeat domains, transcription-cell cycle complex; 3.00A {Schizosaccharomyces pombe} Back     alignment and structure
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M Back     alignment and structure
>2ivx_A Cyclin-T2; transcription regulation, cell division, phosphorylation, NU protein, cell cycle, transcription; 1.8A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_A 3mi9_B* 3mia_B* 3tnh_B* 3tni_B* 3blh_B* 3blq_B* 3blr_B* 3lq5_B* 3my1_B* 3tn8_B* Back     alignment and structure
>2i53_A Cyclin K; cell cycle, transcription, cyclin BOX, CDK9, positive transcription elongation factor, P-TEFB; 1.50A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 Back     alignment and structure
>3h4c_A Transcription factor TFIIB-like; cyclin, transcription factor TFIIB repeat; 2.30A {Trypanosoma brucei brucei} Back     alignment and structure
>3rgf_B Cyclin-C; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens} Back     alignment and structure
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C Back     alignment and structure
>1jkw_A Cyclin H; cell cycle, cell division, nuclear protein; 2.60A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1kxu_A Back     alignment and structure
>2f2c_A Cyclin homolog, V-cyclin; small molecule inhibitor bound between N-terminal and C-TERM domain of kinase, cell cycle-transferase complex; HET: AP9; 2.80A {Herpesvirus saimiri} SCOP: a.74.1.1 a.74.1.1 PDB: 1jow_A* 2euf_A* 1xo2_A* 1bu2_A Back     alignment and structure
>1g3n_C V-cyclin; cyclin-dependent kinase, INK4 inhibitor, viral cyclin, cell cycle, signaling protein; 2.90A {Human herpesvirus 8} SCOP: a.74.1.1 a.74.1.1 Back     alignment and structure
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae} Back     alignment and structure
>2w96_A G1/S-specific cyclin-D1; serine/threonine-protein kinase, chromosomal rearrangement, ATP-binding, transferase, polymorphism, cell division; 2.30A {Homo sapiens} PDB: 2w99_A 2w9f_A 2w9z_A Back     alignment and structure
>2b9r_A Human cyclin B1; cell cycle; 2.90A {Homo sapiens} PDB: 2jgz_B* Back     alignment and structure
>2cch_B Cyclin A2, cyclin-A; complex(transferase/cell division), ATP-binding, CDK2, cell cycle, cyclin, mitosis, nuclear protein; HET: TPO ATP; 1.7A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1fvv_B* 1jsu_B* 1okv_B 1okw_B* 1ol1_B* 1ol2_B* 1urc_B 1fin_B* 2c5p_B* 2c5o_B* 2i40_B* 2wev_B* 2wfy_B 2whb_B* 3eid_B* 3ej1_B* 3eoc_B* 2wha_B* 2x1n_B* 1vyw_B* ... Back     alignment and structure
>3m03_A ORC6, origin recognition complex subunit 6; helix turn helix, DNA binding protein, origin recognition CO DNA replication; HET: MES; 2.50A {Homo sapiens} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 294
d1bu2a1127 a.74.1.1 (A:22-148) Viral cyclin {Herpesvirus saim 2e-34
d2cchb1128 a.74.1.1 (B:181-308) Cyclin A {Cow (Bos taurus) [T 8e-32
d1w98b2140 a.74.1.1 (B:88-227) G1/S-specific cyclin-E1 {Human 2e-30
d1g3nc1132 a.74.1.1 (C:16-147) Viral cyclin {Kaposi's sarcoma 5e-30
d1f5qb1141 a.74.1.1 (B:6-146) Viral cyclin {Murine herpesviru 1e-28
d2i53a1144 a.74.1.1 (A:14-157) Cyclin K {Human (Homo sapiens) 3e-18
d2cchb2124 a.74.1.1 (B:309-432) Cyclin A {Cow (Bos taurus) [T 3e-17
d2ivxa1143 a.74.1.1 (A:7-149) Cyclin-T2 {Human (Homo sapiens) 2e-14
d1jkwa1151 a.74.1.1 (A:11-161) Cyclin H (mcs2) {Human (Homo s 2e-12
>d1bu2a1 a.74.1.1 (A:22-148) Viral cyclin {Herpesvirus saimiri [TaxId: 10381]} Length = 127 Back     information, alignment and structure

class: All alpha proteins
fold: Cyclin-like
superfamily: Cyclin-like
family: Cyclin
domain: Viral cyclin
species: Herpesvirus saimiri [TaxId: 10381]

 Score =  119 bits (299), Expect = 2e-34
 Identities = 35/129 (27%), Positives = 64/129 (49%), Gaps = 4/129 (3%)

Query: 89  IFEYLKSREAEFQIKDYLPFQSSTEKGNINAEMRSVLVDWMVEVQETFELNHETLYLAVK 148
           +   LK RE        L ++  TE   +  + R++L+ WM  + E+FEL+     L+V 
Sbjct: 2   VLNNLKLRELLLPKFTSL-WEIQTE---VTVDNRTILLTWMHLLCESFELDKSVFPLSVS 57

Query: 149 LVDLYLGKVVCSRLNLQLLGATAIFVSSKFDDRIPPQLSDLEYICSHTYSIQDLKDMEIK 208
           ++D YL K   ++  LQ +GA  + + SK     P  +S L Y+    ++  +L + E  
Sbjct: 58  ILDRYLCKKQGTKKTLQKIGAACVLIGSKIRTVKPMTVSKLTYLSCDCFTNLELINQEKD 117

Query: 209 LVTAIGFDL 217
           ++ A+ +D 
Sbjct: 118 ILEALKWDT 126
>d2cchb1 a.74.1.1 (B:181-308) Cyclin A {Cow (Bos taurus) [TaxId: 9913]} Length = 128 Back     information, alignment and structure
>d1w98b2 a.74.1.1 (B:88-227) G1/S-specific cyclin-E1 {Human (Homo sapiens) [TaxId: 9606]} Length = 140 Back     information, alignment and structure
>d1g3nc1 a.74.1.1 (C:16-147) Viral cyclin {Kaposi's sarcoma-associated herpesvirus [TaxId: 37296]} Length = 132 Back     information, alignment and structure
>d1f5qb1 a.74.1.1 (B:6-146) Viral cyclin {Murine herpesvirus 68 [TaxId: 33708]} Length = 141 Back     information, alignment and structure
>d2i53a1 a.74.1.1 (A:14-157) Cyclin K {Human (Homo sapiens) [TaxId: 9606]} Length = 144 Back     information, alignment and structure
>d2cchb2 a.74.1.1 (B:309-432) Cyclin A {Cow (Bos taurus) [TaxId: 9913]} Length = 124 Back     information, alignment and structure
>d2ivxa1 a.74.1.1 (A:7-149) Cyclin-T2 {Human (Homo sapiens) [TaxId: 9606]} Length = 143 Back     information, alignment and structure
>d1jkwa1 a.74.1.1 (A:11-161) Cyclin H (mcs2) {Human (Homo sapiens) [TaxId: 9606]} Length = 151 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query294
d1w98b2140 G1/S-specific cyclin-E1 {Human (Homo sapiens) [Tax 100.0
d2cchb1128 Cyclin A {Cow (Bos taurus) [TaxId: 9913]} 100.0
d1g3nc1132 Viral cyclin {Kaposi's sarcoma-associated herpesvi 100.0
d1bu2a1127 Viral cyclin {Herpesvirus saimiri [TaxId: 10381]} 100.0
d1f5qb1141 Viral cyclin {Murine herpesvirus 68 [TaxId: 33708] 99.97
d2i53a1144 Cyclin K {Human (Homo sapiens) [TaxId: 9606]} 99.83
d1jkwa1151 Cyclin H (mcs2) {Human (Homo sapiens) [TaxId: 9606 99.82
d2ivxa1143 Cyclin-T2 {Human (Homo sapiens) [TaxId: 9606]} 99.78
d2cchb2124 Cyclin A {Cow (Bos taurus) [TaxId: 9913]} 99.65
d1vola195 Transcription factor IIB (TFIIB), core domain {Hum 98.25
d2ivxa2113 Cyclin-T2 {Human (Homo sapiens) [TaxId: 9606]} 98.09
d1aisb198 Transcription factor IIB (TFIIB), core domain {Arc 98.06
d2i53a2110 Cyclin K {Human (Homo sapiens) [TaxId: 9606]} 97.93
d1aisb295 Transcription factor IIB (TFIIB), core domain {Arc 97.88
d1vola2109 Transcription factor IIB (TFIIB), core domain {Hum 97.76
d1aisb295 Transcription factor IIB (TFIIB), core domain {Arc 97.75
d1vola2109 Transcription factor IIB (TFIIB), core domain {Hum 97.55
d1vola195 Transcription factor IIB (TFIIB), core domain {Hum 97.1
d1aisb198 Transcription factor IIB (TFIIB), core domain {Arc 97.07
d1w98b1130 G1/S-specific cyclin-E1 {Human (Homo sapiens) [Tax 96.88
d1jkwa2126 Cyclin H (mcs2) {Human (Homo sapiens) [TaxId: 9606 96.77
d2ivxa2113 Cyclin-T2 {Human (Homo sapiens) [TaxId: 9606]} 95.77
d2i53a1144 Cyclin K {Human (Homo sapiens) [TaxId: 9606]} 94.29
d2ivxa1143 Cyclin-T2 {Human (Homo sapiens) [TaxId: 9606]} 93.93
d2i53a2110 Cyclin K {Human (Homo sapiens) [TaxId: 9606]} 91.63
d1jkwa1151 Cyclin H (mcs2) {Human (Homo sapiens) [TaxId: 9606 89.28
d2cchb1128 Cyclin A {Cow (Bos taurus) [TaxId: 9913]} 87.88
d1bu2a1127 Viral cyclin {Herpesvirus saimiri [TaxId: 10381]} 85.68
d1bu2a2102 Viral cyclin {Herpesvirus saimiri [TaxId: 10381]} 83.09
d1f5qb1141 Viral cyclin {Murine herpesvirus 68 [TaxId: 33708] 82.95
>d1w98b2 a.74.1.1 (B:88-227) G1/S-specific cyclin-E1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All alpha proteins
fold: Cyclin-like
superfamily: Cyclin-like
family: Cyclin
domain: G1/S-specific cyclin-E1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.6e-36  Score=246.34  Aligned_cols=136  Identities=25%  Similarity=0.549  Sum_probs=129.3

Q ss_pred             CCcchhhhHHHHHHHHHHHHhhC-CCCCccCCCCCCCCCCCCHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHhhh
Q psy18159         78 DPLQVSCYAMHIFEYLKSREAEF-QIKDYLPFQSSTEKGNINAEMRSVLVDWMVEVQETFELNHETLYLAVKLVDLYLGK  156 (294)
Q Consensus        78 ~p~~~~eY~~dI~~~l~~~E~~~-~~~~yl~~q~~~~~~~i~~~~R~~lvdWl~~v~~~~~l~~eTl~lAv~ilDRfls~  156 (294)
                      +|.++.+|++|||.+|.++|..+ ++++|+.+|+     +++++||.+++|||++++..|+++++|+|+||+|||||++.
T Consensus         3 ~p~~~~~~~~dI~~~l~~~E~~~~~~~~~l~~q~-----~i~~~~R~~lidW~~~v~~~~~l~~et~~lAv~llDryl~~   77 (140)
T d1w98b2           3 LPVLSWANREEVWKIMLNKEKTYLRDQHFLEQHP-----LLQPKMRAILLDWLMEVCEVYKLHRETFYLAQDFFDRYMAT   77 (140)
T ss_dssp             SCCCSSSCHHHHHHHHHHHTTTSCCCTTGGGGCT-----TCCHHHHHHHHHHHHHHHHHTTCBHHHHHHHHHHHHHHHHH
T ss_pred             CccccccCHHHHHHHHHHHHHhhCCChHHHhCCC-----CCCHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHhc
Confidence            57777899999999999999987 6679999998     99999999999999999999999999999999999999986


Q ss_pred             c-cccccchhhhhhhhhhhhccCCCCCCCChhhHHhhhcCCcCHHHHHHHHHHHHHHhCCCCC
Q psy18159        157 V-VCSRLNLQLLGATAIFVSSKFDDRIPPQLSDLEYICSHTYSIQDLKDMEIKLVTAIGFDLG  218 (294)
Q Consensus       157 ~-~v~~~~lqLvg~acL~IAsK~eE~~~~~i~dl~~i~~~~yt~~~i~~mE~~IL~~L~f~l~  218 (294)
                      . .+.++++||+|+||||||+|+||..+|.+++++++|++.|++++|.+||..||++|+|+++
T Consensus        78 ~~~v~~~~lqL~a~acL~IAsK~ee~~~~~~~~l~~~~~~~~t~~ei~~mE~~IL~~L~~~Ln  140 (140)
T d1w98b2          78 QENVVKTLLQLIGISSLFIAAKLEEIYPPKLHQFAYVTDGACSGDEILTMELMIMKALKWRLS  140 (140)
T ss_dssp             CCCCCGGGHHHHHHHHHHHHHHHHCSSCCCHHHHHHTTTTSSCHHHHHHHHHHHHHHTTTCCC
T ss_pred             cccccHHHHhHHHHHHHHHHHHHcccCCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHCCCcCC
Confidence            5 4899999999999999999999999999999999999999999999999999999999985
>d2cchb1 a.74.1.1 (B:181-308) Cyclin A {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1g3nc1 a.74.1.1 (C:16-147) Viral cyclin {Kaposi's sarcoma-associated herpesvirus [TaxId: 37296]} Back     information, alignment and structure
>d1bu2a1 a.74.1.1 (A:22-148) Viral cyclin {Herpesvirus saimiri [TaxId: 10381]} Back     information, alignment and structure
>d1f5qb1 a.74.1.1 (B:6-146) Viral cyclin {Murine herpesvirus 68 [TaxId: 33708]} Back     information, alignment and structure
>d2i53a1 a.74.1.1 (A:14-157) Cyclin K {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jkwa1 a.74.1.1 (A:11-161) Cyclin H (mcs2) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ivxa1 a.74.1.1 (A:7-149) Cyclin-T2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cchb2 a.74.1.1 (B:309-432) Cyclin A {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1vola1 a.74.1.2 (A:113-207) Transcription factor IIB (TFIIB), core domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ivxa2 a.74.1.1 (A:150-262) Cyclin-T2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1aisb1 a.74.1.2 (B:1108-1205) Transcription factor IIB (TFIIB), core domain {Archaeon Pyrococcus woesei [TaxId: 2262]} Back     information, alignment and structure
>d2i53a2 a.74.1.1 (A:158-267) Cyclin K {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1aisb2 a.74.1.2 (B:1206-1300) Transcription factor IIB (TFIIB), core domain {Archaeon Pyrococcus woesei [TaxId: 2262]} Back     information, alignment and structure
>d1vola2 a.74.1.2 (A:208-316) Transcription factor IIB (TFIIB), core domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1aisb2 a.74.1.2 (B:1206-1300) Transcription factor IIB (TFIIB), core domain {Archaeon Pyrococcus woesei [TaxId: 2262]} Back     information, alignment and structure
>d1vola2 a.74.1.2 (A:208-316) Transcription factor IIB (TFIIB), core domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1vola1 a.74.1.2 (A:113-207) Transcription factor IIB (TFIIB), core domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1aisb1 a.74.1.2 (B:1108-1205) Transcription factor IIB (TFIIB), core domain {Archaeon Pyrococcus woesei [TaxId: 2262]} Back     information, alignment and structure
>d1w98b1 a.74.1.1 (B:228-357) G1/S-specific cyclin-E1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jkwa2 a.74.1.1 (A:162-287) Cyclin H (mcs2) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ivxa2 a.74.1.1 (A:150-262) Cyclin-T2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2i53a1 a.74.1.1 (A:14-157) Cyclin K {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ivxa1 a.74.1.1 (A:7-149) Cyclin-T2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2i53a2 a.74.1.1 (A:158-267) Cyclin K {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jkwa1 a.74.1.1 (A:11-161) Cyclin H (mcs2) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cchb1 a.74.1.1 (B:181-308) Cyclin A {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1bu2a1 a.74.1.1 (A:22-148) Viral cyclin {Herpesvirus saimiri [TaxId: 10381]} Back     information, alignment and structure
>d1bu2a2 a.74.1.1 (A:149-250) Viral cyclin {Herpesvirus saimiri [TaxId: 10381]} Back     information, alignment and structure
>d1f5qb1 a.74.1.1 (B:6-146) Viral cyclin {Murine herpesvirus 68 [TaxId: 33708]} Back     information, alignment and structure