Psyllid ID: psy18222

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130
Protein Sequence
PYELACAVSRGLSGSGGQVQLWQFLLELLGEPSNGGVIVWEGSQGEFRLVDPDEVARRWGLRKSKPNMNYDKLSRALRYYYDKNIMTKVHGKRYAYRFDFQGLMLACQASNTSDAYKLHQTLYLTQKKIK
Secondary Structure (PSIPRED)
cccccccccccccccccccHHHHHHHHHHccccccccEEEEccccEEEEccHHHHHHHHHcccccccccHHHHHHHHHHHHHcccEEccccEEEEEEEccHHHHHHHccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccHHHHHHHHHccHHHccccEEcccccEEEcccHHHHHHHHHHHcccccccHHHHHHHHHcccccccEEEccccccEEEEcHHHHHHHHccccccccccccccccccHHHcc
Coil and Loop (DISEMBL)
pyelacavsrglsgsggQVQLWQFLLELlgepsnggvivwegsqgefrlvdpdevarrwglrkskpnmnydKLSRALRYYydknimtkvhgkryayrFDFQGLMLacqasntsdaYKLHQTLYLTQKKIK
Flexible Loop (DISEMBL)
PYELACAVsrglsgsggQVQLWQFLLELLGEPSNGGVIVWEgsqgefrlvdpdevarrwglrkskpnmnydklSRALRYYYDKNIMTKVHGKRYAYRFDFQGLMLACQASNTSDAYKLHQTLYLTQKKIK
Low Complexity Region (SEG)
PYELACAVSRGLSGSGGQVQLWQFLLELLGEPSNGGVIVWEGSQGEFRLVDPDEVARRWGLRKSKPNMNYDKLSRALRYYYDKNIMTKVHGKRYAYRFDFQGLMLACQASNTSDAYKLHQTLYLTQKKIK
Disordered region (IsUnstruct)
*****CAVSRGLSGSGGQVQLWQFLLELLGEPSNGGVIVWEGSQGEFRLVDPDEVARRWGLRKSKPNMNYDKLSRALRYYYDKNIMTKVHGKRYAYRFDFQGLMLACQASNTSDAYKLHQTLYLT*****
Disordered Region (DISOPRED)
*********************WQFLLELLGEPSNGGVIVWEGSQGEFRLVDPDEVARRWGLRKSKPNMNYDKLSRALRYYYDKNIMTKVHGKRYAYRFDFQGLM**************************
Disordered Region (DISEMBL)
PYELACAVSRGLSGSGGQVQLWQFLLELLGEPSNGGVIVWEGSQGEFRLVDPDEVARRWGLRKSKPNMNYDKLSRALRYYYDKNIMTKVHGKRYAYRFDFQGLMLACQASNTSDAYKLHQTLYLTQKKIK
Disordered Region (DISPRO)
*YELACAVSRGLSGSGGQVQLWQFLLELLGEPSNGGVIVWEGSQGEFRLVDPDEVARRWGLRKSKPNMNYDKLSRALRYYYDKNIMTKVHGKRYAYRFDFQGLMLACQASNTSDAYKLHQTLYLT*****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
PYELACAVSRGLSGSGGQVQLWQFLLELLGEPSNGGVIVWEGSQGEFRLVDPDEVARRWGLRKSKPNMNYDKLSRALRYYYDKNIMTKVHGKRYAYRFDFQGLMLACQASNTSDAYKLHQTLYLTQKKIK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	130	2.2.26 [Sep-21-2011]
P29776	475	DNA-binding protein D-ETS	yes	N/A	0.838	0.229	0.774	1e-46
P29774	490	DNA-binding protein D-ETS	no	N/A	0.961	0.255	0.666	2e-46
A3FEM2	235	Protein FEV OS=Danio reri	yes	N/A	0.915	0.506	0.666	5e-43
Q90837	478	Transcriptional regulator	no	N/A	0.838	0.228	0.7	1e-42
P81270	486	Transcriptional regulator	yes	N/A	0.838	0.224	0.7	2e-42
O70132	237	Protein FEV OS=Rattus nor	no	N/A	0.8	0.438	0.740	3e-42
Q8QZW2	237	Protein FEV OS=Mus muscul	no	N/A	0.8	0.438	0.740	3e-42
Q99581	238	Protein FEV OS=Homo sapie	no	N/A	0.8	0.436	0.740	3e-42
Q01543	452	Friend leukemia integrati	no	N/A	0.9	0.258	0.672	3e-42
P11308	486	Transcriptional regulator	yes	N/A	0.830	0.222	0.706	3e-42

>sp|P29776|ETS6_DROME DNA-binding protein D-ETS-6 OS=Drosophila melanogaster GN=Ets21C PE=2 SV=2

 Score =  184 bits (468), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 86/111 (77%), Positives = 92/111 (82%), Gaps = 2/111 (1%)

Query: 1   PYELACAVSRGL--SGSGGQVQLWQFLLELLGEPSNGGVIVWEGSQGEFRLVDPDEVARR 58
           PY+L  A S  L   GSGGQ+QLWQFLLELL + SN   I WEG  GEFRL+DPDEVARR
Sbjct: 235 PYQLLNAASHRLVAQGSGGQIQLWQFLLELLADSSNANAISWEGQSGEFRLIDPDEVARR 294

Query: 59  WGLRKSKPNMNYDKLSRALRYYYDKNIMTKVHGKRYAYRFDFQGLMLACQA 109
           WG RK+KPNMNYDKLSRALRYYYDKNIMTKVHGKRYAY+FDF GLM ACQA
Sbjct: 295 WGERKAKPNMNYDKLSRALRYYYDKNIMTKVHGKRYAYKFDFHGLMAACQA 345

Drosophila melanogaster (taxid: 7227)

>sp|P29774|ETS3_DROME DNA-binding protein D-ETS-3 OS=Drosophila melanogaster GN=Ets65A PE=2 SV=3

 Score =  184 bits (466), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 84/126 (66%), Positives = 97/126 (76%), Gaps = 1/126 (0%)

Query: 1   PYELACAVSRGLSGSG-GQVQLWQFLLELLGEPSNGGVIVWEGSQGEFRLVDPDEVARRW 59
           PY++    S  L+ SG GQ+QLWQFLLELL + +N   I WEG+ GEF+L DPDEVARRW
Sbjct: 298 PYQMFGPTSSRLASSGSGQIQLWQFLLELLSDSNNASCITWEGTNGEFKLTDPDEVARRW 357

Query: 60  GLRKSKPNMNYDKLSRALRYYYDKNIMTKVHGKRYAYRFDFQGLMLACQASNTSDAYKLH 119
           G RKSKPNMNYDKLSRALRYYYDKNIMTKVHGKRYAY+FDFQGL  A Q + +   YK  
Sbjct: 358 GERKSKPNMNYDKLSRALRYYYDKNIMTKVHGKRYAYKFDFQGLAAATQPAASDPTYKYQ 417

Query: 120 QTLYLT 125
             L++T
Sbjct: 418 SDLFMT 423

Drosophila melanogaster (taxid: 7227)

>sp|A3FEM2|FEV_DANRE Protein FEV OS=Danio rerio GN=fev PE=2 SV=1

 Score =  172 bits (436), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 80/120 (66%), Positives = 91/120 (75%), Gaps = 1/120 (0%)

Query: 8   VSRGLSGSGGQVQLWQFLLELLGEPSNGGVIVWEGSQGEFRLVDPDEVARRWGLRKSKPN 67
           ++ G+    GQ+QLWQFLLELL + +N   I WEG+ GEF+L+DPDEVARRWG RKSKPN
Sbjct: 47  INTGVQKGSGQIQLWQFLLELLSDSANMTCIAWEGTNGEFKLIDPDEVARRWGERKSKPN 106

Query: 68  MNYDKLSRALRYYYDKNIMTKVHGKRYAYRFDFQGLMLACQASNTSDA-YKLHQTLYLTQ 126
           MNYDKLSRALRYYYDKNIMTKVHGKRYAY+FDF GL   CQ S+T  A YK        Q
Sbjct: 107 MNYDKLSRALRYYYDKNIMTKVHGKRYAYKFDFNGLAQVCQPSSTEQAIYKFQSNFAPIQ 166

Functions as a transcriptional regulator. Functions in the differentiation and the maintenance of the central serotonergic neurons. May play a role in cell growth.

Danio rerio (taxid: 7955)

>sp|Q90837|ERG_CHICK Transcriptional regulator Erg OS=Gallus gallus GN=ERG PE=2 SV=1

 Score =  171 bits (432), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 77/110 (70%), Positives = 87/110 (79%), Gaps = 1/110 (0%)

Query: 1   PYELACAVSRGLSGSG-GQVQLWQFLLELLGEPSNGGVIVWEGSQGEFRLVDPDEVARRW 59
           PY++    S  L+  G GQ+QLWQFLLELL + SN   I WEG+ GEF++ DPDEVARRW
Sbjct: 291 PYQILGPTSSRLANPGSGQIQLWQFLLELLSDSSNSNCITWEGTNGEFKMTDPDEVARRW 350

Query: 60  GLRKSKPNMNYDKLSRALRYYYDKNIMTKVHGKRYAYRFDFQGLMLACQA 109
           G RKSKPNMNYDKLSRALRYYYDKNIMTKVHGKRYAY+FDF G+  A Q 
Sbjct: 351 GERKSKPNMNYDKLSRALRYYYDKNIMTKVHGKRYAYKFDFHGIAQALQP 400

Acts as a transcriptional activator.

Gallus gallus (taxid: 9031)

>sp|P81270|ERG_MOUSE Transcriptional regulator ERG OS=Mus musculus GN=Erg PE=1 SV=2

 Score =  170 bits (431), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 77/110 (70%), Positives = 87/110 (79%), Gaps = 1/110 (0%)

Query: 1   PYELACAVSRGLSGSG-GQVQLWQFLLELLGEPSNGGVIVWEGSQGEFRLVDPDEVARRW 59
           PY++    S  L+  G GQ+QLWQFLLELL + SN   I WEG+ GEF++ DPDEVARRW
Sbjct: 299 PYQILGPTSSRLANPGSGQIQLWQFLLELLSDSSNSNCITWEGTNGEFKMTDPDEVARRW 358

Query: 60  GLRKSKPNMNYDKLSRALRYYYDKNIMTKVHGKRYAYRFDFQGLMLACQA 109
           G RKSKPNMNYDKLSRALRYYYDKNIMTKVHGKRYAY+FDF G+  A Q 
Sbjct: 359 GERKSKPNMNYDKLSRALRYYYDKNIMTKVHGKRYAYKFDFHGIAQALQP 408

Transcriptional regulator. May participate in transcriptional regulation through the recruitment of SETDB1 histone methyltransferase and subsequent modification of local chromatin structure.

Mus musculus (taxid: 10090)

>sp|O70132|FEV_RAT Protein FEV OS=Rattus norvegicus GN=Fev PE=2 SV=2

 Score =  170 bits (430), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 80/108 (74%), Positives = 87/108 (80%), Gaps = 4/108 (3%)

Query: 3   ELACAVSRGLSGSGGQVQLWQFLLELLGEPSNGGVIVWEGSQGEFRLVDPDEVARRWGLR 62
            L+ AV +G     GQ+QLWQFLLELL + +N G I WEG  GEF+L DPDEVARRWG R
Sbjct: 35  PLSPAVQKG----SGQIQLWQFLLELLADRANAGCIAWEGGHGEFKLTDPDEVARRWGER 90

Query: 63  KSKPNMNYDKLSRALRYYYDKNIMTKVHGKRYAYRFDFQGLMLACQAS 110
           KSKPNMNYDKLSRALRYYYDKNIM+KVHGKRYAYRFDFQGL  ACQ  
Sbjct: 91  KSKPNMNYDKLSRALRYYYDKNIMSKVHGKRYAYRFDFQGLAQACQPP 138

Functions as a transcriptional regulator. May function as a transcriptional repressor. Functions in the differentiation and the maintenance of the central serotonergic neurons. May play a role in cell growth.

Rattus norvegicus (taxid: 10116)

>sp|Q8QZW2|FEV_MOUSE Protein FEV OS=Mus musculus GN=Fev PE=2 SV=1

 Score =  170 bits (430), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 80/108 (74%), Positives = 87/108 (80%), Gaps = 4/108 (3%)

Query: 3   ELACAVSRGLSGSGGQVQLWQFLLELLGEPSNGGVIVWEGSQGEFRLVDPDEVARRWGLR 62
            L+ AV +G     GQ+QLWQFLLELL + +N G I WEG  GEF+L DPDEVARRWG R
Sbjct: 35  PLSPAVQKG----SGQIQLWQFLLELLADRANAGCIAWEGGHGEFKLTDPDEVARRWGER 90

Query: 63  KSKPNMNYDKLSRALRYYYDKNIMTKVHGKRYAYRFDFQGLMLACQAS 110
           KSKPNMNYDKLSRALRYYYDKNIM+KVHGKRYAYRFDFQGL  ACQ  
Sbjct: 91  KSKPNMNYDKLSRALRYYYDKNIMSKVHGKRYAYRFDFQGLAQACQPP 138

Functions as a transcriptional regulator. May function as a transcriptional repressor. Functions in the differentiation and the maintenance of the central serotonergic neurons. May play a role in cell growth.

Mus musculus (taxid: 10090)

>sp|Q99581|FEV_HUMAN Protein FEV OS=Homo sapiens GN=FEV PE=1 SV=1

 Score =  170 bits (430), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 80/108 (74%), Positives = 87/108 (80%), Gaps = 4/108 (3%)

Query: 3   ELACAVSRGLSGSGGQVQLWQFLLELLGEPSNGGVIVWEGSQGEFRLVDPDEVARRWGLR 62
            L+ AV +G     GQ+QLWQFLLELL + +N G I WEG  GEF+L DPDEVARRWG R
Sbjct: 35  PLSPAVQKG----SGQIQLWQFLLELLADRANAGCIAWEGGHGEFKLTDPDEVARRWGER 90

Query: 63  KSKPNMNYDKLSRALRYYYDKNIMTKVHGKRYAYRFDFQGLMLACQAS 110
           KSKPNMNYDKLSRALRYYYDKNIM+KVHGKRYAYRFDFQGL  ACQ  
Sbjct: 91  KSKPNMNYDKLSRALRYYYDKNIMSKVHGKRYAYRFDFQGLAQACQPP 138

Functions as a transcriptional regulator. According to PubMed:12761502, it functions as a transcriptional repressor. Functions in the differentiation and the maintenance of the central serotonergic neurons. May play a role in cell growth.

Homo sapiens (taxid: 9606)

>sp|Q01543|FLI1_HUMAN Friend leukemia integration 1 transcription factor OS=Homo sapiens GN=FLI1 PE=1 SV=1

 Score =  169 bits (429), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 80/119 (67%), Positives = 91/119 (76%), Gaps = 2/119 (1%)

Query: 1   PYELACAVSRGLSGSG-GQVQLWQFLLELLGEPSNGGVIVWEGSQGEFRLVDPDEVARRW 59
           PY++    S  L+  G GQ+QLWQFLLELL + +N   I WEG+ GEF++ DPDEVARRW
Sbjct: 262 PYQILGPTSSRLANPGSGQIQLWQFLLELLSDSANASCITWEGTNGEFKMTDPDEVARRW 321

Query: 60  GLRKSKPNMNYDKLSRALRYYYDKNIMTKVHGKRYAYRFDFQGLMLACQASNT-SDAYK 117
           G RKSKPNMNYDKLSRALRYYYDKNIMTKVHGKRYAY+FDF G+  A Q   T S  YK
Sbjct: 322 GERKSKPNMNYDKLSRALRYYYDKNIMTKVHGKRYAYKFDFHGIAQALQPHPTESSMYK 380

Sequence-specific transcriptional activator. Recognizes the DNA sequence 5'-C[CA]GGAAGT-3'.

Homo sapiens (taxid: 9606)

>sp|P11308|ERG_HUMAN Transcriptional regulator ERG OS=Homo sapiens GN=ERG PE=1 SV=2

 Score =  169 bits (429), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 77/109 (70%), Positives = 87/109 (79%), Gaps = 1/109 (0%)

Query: 1   PYELACAVSRGLSGSG-GQVQLWQFLLELLGEPSNGGVIVWEGSQGEFRLVDPDEVARRW 59
           PY++    S  L+  G GQ+QLWQFLLELL + SN   I WEG+ GEF++ DPDEVARRW
Sbjct: 299 PYQILGPTSSRLANPGSGQIQLWQFLLELLSDSSNSSCITWEGTNGEFKMTDPDEVARRW 358

Query: 60  GLRKSKPNMNYDKLSRALRYYYDKNIMTKVHGKRYAYRFDFQGLMLACQ 108
           G RKSKPNMNYDKLSRALRYYYDKNIMTKVHGKRYAY+FDF G+  A Q
Sbjct: 359 GERKSKPNMNYDKLSRALRYYYDKNIMTKVHGKRYAYKFDFHGIAQALQ 407

Transcriptional regulator. May participate in transcriptional regulation through the recruitment of SETDB1 histone methyltransferase and subsequent modification of local chromatin structure.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	130
357609717	257	hypothetical protein KGM_08723 [Danaus p	0.961	0.486	0.682	1e-45
321473620	188	hypothetical protein DAPPUDRAFT_46766 [D	0.961	0.664	0.690	1e-45
195032793	498	GH10509 [Drosophila grimshawi] gi|193904	0.838	0.218	0.765	4e-45
195118236	511	GI18027 [Drosophila mojavensis] gi|19391	0.838	0.213	0.765	4e-45
195388358	505	GJ19705 [Drosophila virilis] gi|19414930	0.838	0.215	0.765	4e-45
195011781	257	GH15833 [Drosophila grimshawi] gi|193896	0.961	0.486	0.674	5e-45
195350129	475	GM16660 [Drosophila sechellia] gi|194123	0.838	0.229	0.774	7e-45
17647397	475	Ets at 21C, isoform A [Drosophila melano	0.838	0.229	0.774	8e-45
28316866	490	RH40480p [Drosophila melanogaster]	0.961	0.255	0.666	1e-44
194853562	481	GG24643 [Drosophila erecta] gi|190660051	0.838	0.226	0.774	1e-44

>gi|357609717|gb|EHJ66603.1| hypothetical protein KGM_08723 [Danaus plexippus]

 Score =  187 bits (475), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 86/126 (68%), Positives = 99/126 (78%), Gaps = 1/126 (0%)

Query: 1   PYELACAVSRGLSGSG-GQVQLWQFLLELLGEPSNGGVIVWEGSQGEFRLVDPDEVARRW 59
           PY++    S  L+ SG GQ+QLWQFLLELL + SN G I WEG+ GEF+L DPDEVARRW
Sbjct: 69  PYQMFGPTSSRLANSGSGQIQLWQFLLELLSDSSNAGCITWEGTNGEFKLTDPDEVARRW 128

Query: 60  GLRKSKPNMNYDKLSRALRYYYDKNIMTKVHGKRYAYRFDFQGLMLACQASNTSDAYKLH 119
           G RKSKPNMNYDKLSRALRYYYDKNIMTKVHGKRYAY+FDFQGL  A Q + +  AYK  
Sbjct: 129 GERKSKPNMNYDKLSRALRYYYDKNIMTKVHGKRYAYKFDFQGLAAATQPAASDPAYKYQ 188

Query: 120 QTLYLT 125
             L+++
Sbjct: 189 SDLFMS 194

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|321473620|gb|EFX84587.1| hypothetical protein DAPPUDRAFT_46766 [Daphnia pulex]

 Score =  187 bits (474), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 87/126 (69%), Positives = 99/126 (78%), Gaps = 1/126 (0%)

Query: 1   PYELACAVSRGLSGSG-GQVQLWQFLLELLGEPSNGGVIVWEGSQGEFRLVDPDEVARRW 59
           PY++  A S  L+ SG GQ+QLWQFLLELL + SN   I WEG+ GEF+L DPDEVARRW
Sbjct: 4   PYQMFGATSSRLASSGSGQIQLWQFLLELLSDSSNAACITWEGTNGEFKLTDPDEVARRW 63

Query: 60  GLRKSKPNMNYDKLSRALRYYYDKNIMTKVHGKRYAYRFDFQGLMLACQASNTSDAYKLH 119
           G RKSKPNMNYDKLSRALRYYYDKNIM+KVHGKRYAY+FDFQGL  A Q + T  AYK  
Sbjct: 64  GERKSKPNMNYDKLSRALRYYYDKNIMSKVHGKRYAYKFDFQGLAAATQPTPTDPAYKYQ 123

Query: 120 QTLYLT 125
             L++T
Sbjct: 124 SDLFMT 129

Source: Daphnia pulex

Species: Daphnia pulex

Genus: Daphnia

Family: Daphniidae

Order: Diplostraca

Class: Branchiopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195032793|ref|XP_001988562.1| GH10509 [Drosophila grimshawi] gi|193904562|gb|EDW03429.1| GH10509 [Drosophila grimshawi]

 Score =  186 bits (471), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 85/111 (76%), Positives = 92/111 (82%), Gaps = 2/111 (1%)

Query: 1   PYELACAVSRGL--SGSGGQVQLWQFLLELLGEPSNGGVIVWEGSQGEFRLVDPDEVARR 58
           PY+L  A S  L   GSGGQ+QLWQFLLELL + SN   I WEG  GEFRLV+PDEVA+R
Sbjct: 244 PYQLLNAASHRLVAQGSGGQIQLWQFLLELLADSSNASSITWEGQSGEFRLVEPDEVAKR 303

Query: 59  WGLRKSKPNMNYDKLSRALRYYYDKNIMTKVHGKRYAYRFDFQGLMLACQA 109
           WG RK+KPNMNYDKLSRALRYYYDKNIMTKVHGKRYAY+FDF GLM ACQA
Sbjct: 304 WGERKAKPNMNYDKLSRALRYYYDKNIMTKVHGKRYAYKFDFHGLMAACQA 354

Source: Drosophila grimshawi

Species: Drosophila grimshawi

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195118236|ref|XP_002003646.1| GI18027 [Drosophila mojavensis] gi|193914221|gb|EDW13088.1| GI18027 [Drosophila mojavensis]

 Score =  186 bits (471), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 85/111 (76%), Positives = 92/111 (82%), Gaps = 2/111 (1%)

Query: 1   PYELACAVSRGL--SGSGGQVQLWQFLLELLGEPSNGGVIVWEGSQGEFRLVDPDEVARR 58
           PY+L  A S  L   GSGGQ+QLWQFLLELL + SN   I WEG  GEFRL+DPDEVA+R
Sbjct: 250 PYQLLNAASHRLVAQGSGGQIQLWQFLLELLADSSNANCISWEGQSGEFRLIDPDEVAKR 309

Query: 59  WGLRKSKPNMNYDKLSRALRYYYDKNIMTKVHGKRYAYRFDFQGLMLACQA 109
           WG RK+KPNMNYDKLSRALRYYYDKNIMTKVHGKRYAY+FDF GLM ACQA
Sbjct: 310 WGERKAKPNMNYDKLSRALRYYYDKNIMTKVHGKRYAYKFDFHGLMAACQA 360

Source: Drosophila mojavensis

Species: Drosophila mojavensis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195388358|ref|XP_002052847.1| GJ19705 [Drosophila virilis] gi|194149304|gb|EDW65002.1| GJ19705 [Drosophila virilis]

 Score =  185 bits (470), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 85/111 (76%), Positives = 92/111 (82%), Gaps = 2/111 (1%)

Query: 1   PYELACAVSRGL--SGSGGQVQLWQFLLELLGEPSNGGVIVWEGSQGEFRLVDPDEVARR 58
           PY+L  A S  L   GSGGQ+QLWQFLLELL + SN   I WEG  GEFRL+DPDEVA+R
Sbjct: 234 PYQLLNAASHRLVAQGSGGQIQLWQFLLELLADSSNANCISWEGQSGEFRLIDPDEVAKR 293

Query: 59  WGLRKSKPNMNYDKLSRALRYYYDKNIMTKVHGKRYAYRFDFQGLMLACQA 109
           WG RK+KPNMNYDKLSRALRYYYDKNIMTKVHGKRYAY+FDF GLM ACQA
Sbjct: 294 WGERKAKPNMNYDKLSRALRYYYDKNIMTKVHGKRYAYKFDFHGLMAACQA 344

Source: Drosophila virilis

Species: Drosophila virilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195011781|ref|XP_001983315.1| GH15833 [Drosophila grimshawi] gi|193896797|gb|EDV95663.1| GH15833 [Drosophila grimshawi]

 Score =  185 bits (469), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 85/126 (67%), Positives = 98/126 (77%), Gaps = 1/126 (0%)

Query: 1   PYELACAVSRGLSGSG-GQVQLWQFLLELLGEPSNGGVIVWEGSQGEFRLVDPDEVARRW 59
           PY++  A S  L+ SG GQ+QLWQFLLELL + +N   I WEG+ GEF+L DPDEVARRW
Sbjct: 65  PYQMFGATSSRLASSGSGQIQLWQFLLELLSDSNNAACITWEGTNGEFKLTDPDEVARRW 124

Query: 60  GLRKSKPNMNYDKLSRALRYYYDKNIMTKVHGKRYAYRFDFQGLMLACQASNTSDAYKLH 119
           G RKSKPNMNYDKLSRALRYYYDKNIMTKVHGKRYAY+FDFQGL  A Q + +   YK  
Sbjct: 125 GERKSKPNMNYDKLSRALRYYYDKNIMTKVHGKRYAYKFDFQGLAAATQPAASDPTYKYQ 184

Query: 120 QTLYLT 125
             L++T
Sbjct: 185 SDLFMT 190

Source: Drosophila grimshawi

Species: Drosophila grimshawi

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195350129|ref|XP_002041594.1| GM16660 [Drosophila sechellia] gi|194123367|gb|EDW45410.1| GM16660 [Drosophila sechellia]

 Score =  185 bits (469), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 86/111 (77%), Positives = 92/111 (82%), Gaps = 2/111 (1%)

Query: 1   PYELACAVSRGL--SGSGGQVQLWQFLLELLGEPSNGGVIVWEGSQGEFRLVDPDEVARR 58
           PY+L  A S  L   GSGGQ+QLWQFLLELL + SN   I WEG  GEFRL+DPDEVARR
Sbjct: 235 PYQLLNAASHRLVAQGSGGQIQLWQFLLELLADSSNANAISWEGQSGEFRLIDPDEVARR 294

Query: 59  WGLRKSKPNMNYDKLSRALRYYYDKNIMTKVHGKRYAYRFDFQGLMLACQA 109
           WG RK+KPNMNYDKLSRALRYYYDKNIMTKVHGKRYAY+FDF GLM ACQA
Sbjct: 295 WGERKAKPNMNYDKLSRALRYYYDKNIMTKVHGKRYAYKFDFHGLMAACQA 345

Source: Drosophila sechellia

Species: Drosophila sechellia

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|17647397|ref|NP_523445.1| Ets at 21C, isoform A [Drosophila melanogaster] gi|13124742|sp|P29776.2|ETS6_DROME RecName: Full=DNA-binding protein D-ETS-6 gi|7296192|gb|AAF51484.1| Ets at 21C, isoform A [Drosophila melanogaster] gi|157816780|gb|ABV82382.1| LP04687p [Drosophila melanogaster]

 Score =  184 bits (468), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 86/111 (77%), Positives = 92/111 (82%), Gaps = 2/111 (1%)

Query: 1   PYELACAVSRGL--SGSGGQVQLWQFLLELLGEPSNGGVIVWEGSQGEFRLVDPDEVARR 58
           PY+L  A S  L   GSGGQ+QLWQFLLELL + SN   I WEG  GEFRL+DPDEVARR
Sbjct: 235 PYQLLNAASHRLVAQGSGGQIQLWQFLLELLADSSNANAISWEGQSGEFRLIDPDEVARR 294

Query: 59  WGLRKSKPNMNYDKLSRALRYYYDKNIMTKVHGKRYAYRFDFQGLMLACQA 109
           WG RK+KPNMNYDKLSRALRYYYDKNIMTKVHGKRYAY+FDF GLM ACQA
Sbjct: 295 WGERKAKPNMNYDKLSRALRYYYDKNIMTKVHGKRYAYKFDFHGLMAACQA 345

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|28316866|gb|AAO39456.1| RH40480p [Drosophila melanogaster]

 Score =  184 bits (466), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 84/126 (66%), Positives = 98/126 (77%), Gaps = 1/126 (0%)

Query: 1   PYELACAVSRGLSGSG-GQVQLWQFLLELLGEPSNGGVIVWEGSQGEFRLVDPDEVARRW 59
           PY++    S  L+ SG GQ+QLWQFLLELL + +N   I WEG+ GEF+L DPDEVARRW
Sbjct: 298 PYQMFGPTSSRLASSGSGQIQLWQFLLELLSDSNNASCITWEGTNGEFKLTDPDEVARRW 357

Query: 60  GLRKSKPNMNYDKLSRALRYYYDKNIMTKVHGKRYAYRFDFQGLMLACQASNTSDAYKLH 119
           G RKSKPNMNYDKLSRALRYYYDKNIMTKVHGKRYAY+FDFQGL  A Q + +   YK  
Sbjct: 358 GERKSKPNMNYDKLSRALRYYYDKNIMTKVHGKRYAYKFDFQGLAAATQPAASDPTYKYQ 417

Query: 120 QTLYLT 125
           + L++T
Sbjct: 418 RDLFMT 423

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194853562|ref|XP_001968184.1| GG24643 [Drosophila erecta] gi|190660051|gb|EDV57243.1| GG24643 [Drosophila erecta]

 Score =  184 bits (466), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 86/111 (77%), Positives = 92/111 (82%), Gaps = 2/111 (1%)

Query: 1   PYELACAVSRGL--SGSGGQVQLWQFLLELLGEPSNGGVIVWEGSQGEFRLVDPDEVARR 58
           PY+L  A S  L   GSGGQ+QLWQFLLELL + SN   I WEG  GEFRL+DPDEVARR
Sbjct: 241 PYQLLNAASHRLVAQGSGGQIQLWQFLLELLADSSNANAISWEGQSGEFRLIDPDEVARR 300

Query: 59  WGLRKSKPNMNYDKLSRALRYYYDKNIMTKVHGKRYAYRFDFQGLMLACQA 109
           WG RK+KPNMNYDKLSRALRYYYDKNIMTKVHGKRYAY+FDF GLM ACQA
Sbjct: 301 WGERKAKPNMNYDKLSRALRYYYDKNIMTKVHGKRYAYKFDFHGLMAACQA 351

Source: Drosophila erecta

Species: Drosophila erecta

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	130
FB|FBgn0005660	475	Ets21C "Ets at 21C" [Drosophil	0.838	0.229	0.774	1.3e-43
FB|FBgn0005658	490	Ets65A "Ets at 65A" [Drosophil	0.961	0.255	0.666	1.2e-42
ZFIN|ZDB-GENE-070112-1852	235	fev "FEV (ETS oncogene family)	0.846	0.468	0.711	1.2e-40
WB|WBGene00020368	377	ast-1 [Caenorhabditis elegans	0.915	0.315	0.666	4.2e-40
ZFIN|ZDB-GENE-980526-426	451	fli1a "friend leukemia integra	0.9	0.259	0.680	4.2e-40
UNIPROTKB|E1BVB4	432	FLI1 "Uncharacterized protein"	0.9	0.270	0.680	6.8e-40
UNIPROTKB|F1NT87	432	FLI1 "Uncharacterized protein"	0.9	0.270	0.680	6.8e-40
UNIPROTKB|F1N1U5	239	FEV "Uncharacterized protein"	0.776	0.422	0.761	6.8e-40
UNIPROTKB|Q99581	238	FEV "Protein FEV" [Homo sapien	0.776	0.424	0.761	6.8e-40
MGI|MGI:2449712	237	Fev "FEV (ETS oncogene family)	0.776	0.426	0.761	6.8e-40

FB|FBgn0005660 Ets21C "Ets at 21C" [Drosophila melanogaster (taxid:7227)]

 Score = 460 (167.0 bits), Expect = 1.3e-43, P = 1.3e-43
 Identities = 86/111 (77%), Positives = 92/111 (82%)

Query:     1 PYELACAVSRGL--SGSGGQVQLWQFLLELLGEPSNGGVIVWEGSQGEFRLVDPDEVARR 58
             PY+L  A S  L   GSGGQ+QLWQFLLELL + SN   I WEG  GEFRL+DPDEVARR
Sbjct:   235 PYQLLNAASHRLVAQGSGGQIQLWQFLLELLADSSNANAISWEGQSGEFRLIDPDEVARR 294

Query:    59 WGLRKSKPNMNYDKLSRALRYYYDKNIMTKVHGKRYAYRFDFQGLMLACQA 109
             WG RK+KPNMNYDKLSRALRYYYDKNIMTKVHGKRYAY+FDF GLM ACQA
Sbjct:   295 WGERKAKPNMNYDKLSRALRYYYDKNIMTKVHGKRYAYKFDFHGLMAACQA 345

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISS;NAS

GO:0003677 "DNA binding" evidence=NAS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0048813 "dendrite morphogenesis" evidence=IMP

GO:0042742 "defense response to bacterium" evidence=IMP

FB|FBgn0005658 Ets65A "Ets at 65A" [Drosophila melanogaster (taxid:7227)]

 Score = 451 (163.8 bits), Expect = 1.2e-42, P = 1.2e-42
 Identities = 84/126 (66%), Positives = 97/126 (76%)

Query:     1 PYELACAVSRGLSGSG-GQVQLWQFLLELLGEPSNGGVIVWEGSQGEFRLVDPDEVARRW 59
             PY++    S  L+ SG GQ+QLWQFLLELL + +N   I WEG+ GEF+L DPDEVARRW
Sbjct:   298 PYQMFGPTSSRLASSGSGQIQLWQFLLELLSDSNNASCITWEGTNGEFKLTDPDEVARRW 357

Query:    60 GLRKSKPNMNYDKLSRALRYYYDKNIMTKVHGKRYAYRFDFQGLMLACQASNTSDAYKLH 119
             G RKSKPNMNYDKLSRALRYYYDKNIMTKVHGKRYAY+FDFQGL  A Q + +   YK  
Sbjct:   358 GERKSKPNMNYDKLSRALRYYYDKNIMTKVHGKRYAYKFDFQGLAAATQPAASDPTYKYQ 417

Query:   120 QTLYLT 125
               L++T
Sbjct:   418 SDLFMT 423

GO:0003677 "DNA binding" evidence=ISS;NAS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0005634 "nucleus" evidence=ISS;NAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

ZFIN|ZDB-GENE-070112-1852 fev "FEV (ETS oncogene family)" [Danio rerio (taxid:7955)]

 Score = 432 (157.1 bits), Expect = 1.2e-40, P = 1.2e-40
 Identities = 79/111 (71%), Positives = 90/111 (81%)

Query:     8 VSRGLSGSGGQVQLWQFLLELLGEPSNGGVIVWEGSQGEFRLVDPDEVARRWGLRKSKPN 67
             ++ G+    GQ+QLWQFLLELL + +N   I WEG+ GEF+L+DPDEVARRWG RKSKPN
Sbjct:    47 INTGVQKGSGQIQLWQFLLELLSDSANMTCIAWEGTNGEFKLIDPDEVARRWGERKSKPN 106

Query:    68 MNYDKLSRALRYYYDKNIMTKVHGKRYAYRFDFQGLMLACQASNTSDA-YK 117
             MNYDKLSRALRYYYDKNIMTKVHGKRYAY+FDF GL   CQ S+T  A YK
Sbjct:   107 MNYDKLSRALRYYYDKNIMTKVHGKRYAYKFDFNGLAQVCQPSSTEQAIYK 157

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0030154 "cell differentiation" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0007399 "nervous system development" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=IEA

WB|WBGene00020368 ast-1 [Caenorhabditis elegans (taxid:6239)]

 Score = 427 (155.4 bits), Expect = 4.2e-40, P = 4.2e-40
 Identities = 82/123 (66%), Positives = 95/123 (77%)

Query:     1 PYELACAVSRGLSGSG-GQVQLWQFLLELLGEPSNGGVIVWEGSQGEFRLVDPDEVARRW 59
             PY++    S+ L+ SG GQ QLWQFLLELL +     VI WEG+QGEF+LVDPDEVAR+W
Sbjct:   195 PYQILGPTSKNLAHSGSGQTQLWQFLLELLSDKRYSEVITWEGTQGEFKLVDPDEVARKW 254

Query:    60 GLRKSKPNMNYDKLSRALRYYYDKNIMTKVHGKRYAYRFDFQGLMLACQ---ASNTSDAY 116
             G RKSKPNMNYDK+SRALRYYYDKNIM KVHGKRYAY+FDFQG+  A Q   AS+  D +
Sbjct:   255 GERKSKPNMNYDKMSRALRYYYDKNIMAKVHGKRYAYKFDFQGIAQALQPPTASHPQDYF 314

Query:   117 KLH 119
               H
Sbjct:   315 NSH 317

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0002119 "nematode larval development" evidence=IMP

GO:0040007 "growth" evidence=IMP

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

GO:0018991 "oviposition" evidence=IMP

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IMP

GO:0071542 "dopaminergic neuron differentiation" evidence=IMP

ZFIN|ZDB-GENE-980526-426 fli1a "friend leukemia integration 1a" [Danio rerio (taxid:7955)]

 Score = 427 (155.4 bits), Expect = 4.2e-40, P = 4.2e-40
 Identities = 81/119 (68%), Positives = 92/119 (77%)

Query:     1 PYELACAVSRGLSGSG-GQVQLWQFLLELLGEPSNGGVIVWEGSQGEFRLVDPDEVARRW 59
             PY++    S  L+  G GQ+QLWQFLLELL + +N G I WEG+ GEF++ DPDEVARRW
Sbjct:   261 PYQILGPTSSRLANPGSGQIQLWQFLLELLSDSANAGCITWEGTNGEFKMTDPDEVARRW 320

Query:    60 GLRKSKPNMNYDKLSRALRYYYDKNIMTKVHGKRYAYRFDFQGLMLACQASNT-SDAYK 117
             G RKSKPNMNYDKLSRALRYYYDKNIMTKVHGKRYAY+FDF G+  A Q   T S  YK
Sbjct:   321 GERKSKPNMNYDKLSRALRYYYDKNIMTKVHGKRYAYKFDFHGIAQALQPHPTESTMYK 379

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0001525 "angiogenesis" evidence=IGI

GO:0048514 "blood vessel morphogenesis" evidence=IGI

GO:0003677 "DNA binding" evidence=IEA

GO:0051091 "positive regulation of sequence-specific DNA binding transcription factor activity" evidence=IMP

UNIPROTKB|E1BVB4 FLI1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 425 (154.7 bits), Expect = 6.8e-40, P = 6.8e-40
 Identities = 81/119 (68%), Positives = 91/119 (76%)

Query:     1 PYELACAVSRGLSGSG-GQVQLWQFLLELLGEPSNGGVIVWEGSQGEFRLVDPDEVARRW 59
             PY++    S  L+  G GQ+QLWQFLLELL + SN   I WEG+ GEF++ DPDEVARRW
Sbjct:   242 PYQILGPTSSRLANPGDGQIQLWQFLLELLSDSSNASCITWEGTNGEFKMTDPDEVARRW 301

Query:    60 GLRKSKPNMNYDKLSRALRYYYDKNIMTKVHGKRYAYRFDFQGLMLACQASNT-SDAYK 117
             G RKSKPNMNYDKLSRALRYYYDKNIMTKVHGKRYAY+FDF G+  A Q   T S  YK
Sbjct:   302 GERKSKPNMNYDKLSRALRYYYDKNIMTKVHGKRYAYKFDFHGIAQALQPHPTESSMYK 360

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|F1NT87 FLI1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 425 (154.7 bits), Expect = 6.8e-40, P = 6.8e-40
 Identities = 81/119 (68%), Positives = 91/119 (76%)

Query:     1 PYELACAVSRGLSGSG-GQVQLWQFLLELLGEPSNGGVIVWEGSQGEFRLVDPDEVARRW 59
             PY++    S  L+  G GQ+QLWQFLLELL + SN   I WEG+ GEF++ DPDEVARRW
Sbjct:   242 PYQILGPTSSRLANPGSGQIQLWQFLLELLSDSSNASCITWEGTNGEFKMTDPDEVARRW 301

Query:    60 GLRKSKPNMNYDKLSRALRYYYDKNIMTKVHGKRYAYRFDFQGLMLACQASNT-SDAYK 117
             G RKSKPNMNYDKLSRALRYYYDKNIMTKVHGKRYAY+FDF G+  A Q   T S  YK
Sbjct:   302 GERKSKPNMNYDKLSRALRYYYDKNIMTKVHGKRYAYKFDFHGIAQALQPHPTESSMYK 360

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

GO:0000980 "RNA polymerase II distal enhancer sequence-specific DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0008015 "blood circulation" evidence=IEA

GO:0009887 "organ morphogenesis" evidence=IEA

UNIPROTKB|F1N1U5 FEV "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 425 (154.7 bits), Expect = 6.8e-40, P = 6.8e-40
 Identities = 80/105 (76%), Positives = 87/105 (82%)

Query:     4 LACAVSRGLSGSGGQVQLWQFLLELLGEPSNGGVIVWEGSQGEFRLVDPDEVARRWGLRK 63
             L+ AV +G     GQ+QLWQFLLELL + +N G I WEG  GEF+L DPDEVARRWG RK
Sbjct:    36 LSPAVQKG----SGQIQLWQFLLELLADRANAGCIAWEGGHGEFKLTDPDEVARRWGERK 91

Query:    64 SKPNMNYDKLSRALRYYYDKNIMTKVHGKRYAYRFDFQGLMLACQ 108
             SKPNMNYDKLSRALRYYYDKNIM+KVHGKRYAYRFDFQGL  ACQ
Sbjct:    92 SKPNMNYDKLSRALRYYYDKNIMSKVHGKRYAYRFDFQGLAQACQ 136

GO:0048665 "neuron fate specification" evidence=IEA

GO:0042551 "neuron maturation" evidence=IEA

GO:0010628 "positive regulation of gene expression" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

UNIPROTKB|Q99581 FEV "Protein FEV" [Homo sapiens (taxid:9606)]

 Score = 425 (154.7 bits), Expect = 6.8e-40, P = 6.8e-40
 Identities = 80/105 (76%), Positives = 87/105 (82%)

Query:     4 LACAVSRGLSGSGGQVQLWQFLLELLGEPSNGGVIVWEGSQGEFRLVDPDEVARRWGLRK 63
             L+ AV +G     GQ+QLWQFLLELL + +N G I WEG  GEF+L DPDEVARRWG RK
Sbjct:    36 LSPAVQKG----SGQIQLWQFLLELLADRANAGCIAWEGGHGEFKLTDPDEVARRWGERK 91

Query:    64 SKPNMNYDKLSRALRYYYDKNIMTKVHGKRYAYRFDFQGLMLACQ 108
             SKPNMNYDKLSRALRYYYDKNIM+KVHGKRYAYRFDFQGL  ACQ
Sbjct:    92 SKPNMNYDKLSRALRYYYDKNIMSKVHGKRYAYRFDFQGLAQACQ 136

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0003690 "double-stranded DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

GO:0042551 "neuron maturation" evidence=IEA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IEA

GO:0048665 "neuron fate specification" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0003714 "transcription corepressor activity" evidence=TAS

GO:0006366 "transcription from RNA polymerase II promoter" evidence=TAS

MGI|MGI:2449712 Fev "FEV (ETS oncogene family)" [Mus musculus (taxid:10090)]

 Score = 425 (154.7 bits), Expect = 6.8e-40, P = 6.8e-40
 Identities = 80/105 (76%), Positives = 87/105 (82%)

Query:     4 LACAVSRGLSGSGGQVQLWQFLLELLGEPSNGGVIVWEGSQGEFRLVDPDEVARRWGLRK 63
             L+ AV +G     GQ+QLWQFLLELL + +N G I WEG  GEF+L DPDEVARRWG RK
Sbjct:    36 LSPAVQKG----SGQIQLWQFLLELLADRANAGCIAWEGGHGEFKLTDPDEVARRWGERK 91

Query:    64 SKPNMNYDKLSRALRYYYDKNIMTKVHGKRYAYRFDFQGLMLACQ 108
             SKPNMNYDKLSRALRYYYDKNIM+KVHGKRYAYRFDFQGL  ACQ
Sbjct:    92 SKPNMNYDKLSRALRYYYDKNIMSKVHGKRYAYRFDFQGLAQACQ 136

GO:0003677 "DNA binding" evidence=IEA

GO:0003690 "double-stranded DNA binding" evidence=ISO

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISO

GO:0005634 "nucleus" evidence=IDA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=IEA

GO:0007399 "nervous system development" evidence=IEA

GO:0010628 "positive regulation of gene expression" evidence=IMP

GO:0030154 "cell differentiation" evidence=IEA

GO:0042551 "neuron maturation" evidence=IMP

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=ISO

GO:0048665 "neuron fate specification" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P29776	ETS6_DROME	No assigned EC number	0.7747	0.8384	0.2294	yes	N/A
P11308	ERG_HUMAN	No assigned EC number	0.7064	0.8307	0.2222	yes	N/A
P81270	ERG_MOUSE	No assigned EC number	0.7	0.8384	0.2242	yes	N/A
A3FEM2	FEV_DANRE	No assigned EC number	0.6666	0.9153	0.5063	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	130
smart00413	87	smart00413, ETS, erythroblast transformation speci	1e-47
pfam00178	85	pfam00178, Ets, Ets-domain	2e-45

>gnl|CDD|197710 smart00413, ETS, erythroblast transformation specific domain

 Score =  147 bits (374), Expect = 1e-47
 Identities = 55/87 (63%), Positives = 66/87 (75%), Gaps = 1/87 (1%)

Query: 18  QVQLWQFLLELLGEPSNGGVIVWEG-SQGEFRLVDPDEVARRWGLRKSKPNMNYDKLSRA 76
            +QLWQFLL+LL +P N  +I W    +GEF+LVDP+EVAR WG RK+KPNMNY+KLSRA
Sbjct: 1   GIQLWQFLLDLLLDPENSDIIKWTDRDEGEFKLVDPEEVARLWGQRKNKPNMNYEKLSRA 60

Query: 77  LRYYYDKNIMTKVHGKRYAYRFDFQGL 103
           LRYYY KNI+ KV GKR  Y+F    L
Sbjct: 61  LRYYYKKNILEKVPGKRLVYKFVKNPL 87

variation of the helix-turn-helix motif. Length = 87

>gnl|CDD|143944 pfam00178, Ets, Ets-domain

 Score =  142 bits (359), Expect = 2e-45
 Identities = 56/84 (66%), Positives = 65/84 (77%), Gaps = 1/84 (1%)

Query: 18  QVQLWQFLLELLGEPSNGGVIVWEG-SQGEFRLVDPDEVARRWGLRKSKPNMNYDKLSRA 76
           Q+QLWQFLLELL +  N   I W G  +GEF+LVDP+EVAR WG+RK+KPNMNYDKLSRA
Sbjct: 1   QIQLWQFLLELLTDQDNRDFIRWTGRDKGEFKLVDPEEVARLWGIRKNKPNMNYDKLSRA 60

Query: 77  LRYYYDKNIMTKVHGKRYAYRFDF 100
           LRYYY K I+ KV GKR  Y+F  
Sbjct: 61  LRYYYKKGIIRKVKGKRLVYKFVS 84

Length = 85

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	130
KOG3806|consensus	177		100.0
smart00413	87	ETS erythroblast transformation specific domain. v	100.0
PF00178	85	Ets: Ets-domain; InterPro: IPR000418 Transcription	100.0
KOG3805|consensus	361		99.97
KOG3804|consensus	390		99.95
KOG3804|consensus	390		98.88
PF00447	103	HSF_DNA-bind: HSF-type DNA-binding; InterPro: IPR0	97.21
smart00415	105	HSF heat shock factor.	96.96
COG5169	282	HSF1 Heat shock transcription factor [Transcriptio	94.66
KOG0627|consensus	304		90.24
PF00605	109	IRF: Interferon regulatory factor transcription fa	84.68

>KOG3806|consensus

Probab=100.00  E-value=3.1e-45  Score=283.14  Aligned_cols=114  Identities=58%  Similarity=0.993  Sum_probs=107.3

Q ss_pred             CcccccCC-CcCcCCCCCceehHHHHHHhhCCCCCCCCeeEecC-CCeEEEeChHHHHHHhhcccCCCCCcHHHHHHHHH
Q psy18222          1 PYELACAV-SRGLSGSGGQVQLWQFLLELLGEPSNGGVIVWEGS-QGEFRLVDPDEVARRWGLRKSKPNMNYDKLSRALR   78 (130)
Q Consensus         1 ~~~~~~p~-~r~~~~~~g~~~LW~FLl~LL~d~~~~~~I~Wt~~-~~eFri~d~~~vArlWG~~Knk~~M~YeklsRsLR   78 (130)
                      ||++.+|+ ...+..++|+++|||||++||+|+++++||+|||. ++||+++||++||||||.+||+|+|||||||||||
T Consensus        50 ~~~~~~~~~~~~s~~~sg~iqLwqFLleLl~d~~~~~~I~Wtg~~g~EFkl~dp~eVArlWG~rK~kp~MNYdKLSRaLR  129 (177)
T KOG3806|consen   50 PYQPENPLSKNESTSGSGQIQLWQFLLELLQDESNAHIIAWTGKDGLEFKLVDPDEVARLWGARKNKPNMNYDKLSRALR  129 (177)
T ss_pred             cccccccccccccCCCCchhhHHHHHHHHHhCcccCCeeEEeCCCCceEEecCHHHHHHHHhhhhCCCCCCHHHHHHHHH
Confidence            57888888 55677799999999999999999999999999995 67999999999999999999999999999999999


Q ss_pred             HhhhcccEEecCceeeEEEecccchhhhhccCCCCh
Q psy18222         79 YYYDKNIMTKVHGKRYAYRFDFQGLMLACQASNTSD  114 (130)
Q Consensus        79 ~yY~kgIl~Kv~g~rl~Y~F~~~~~~~~~~~~~~~~  114 (130)
                      |||+++||+||+|+|++|+|+.+....+++|++..+
T Consensus       130 yyY~kni~~Kv~Gkr~~YkF~~~~~~~~~~~~~~~~  165 (177)
T KOG3806|consen  130 YYYDKNILKKVPGKRFVYKFVFDPLNLALYPHTLKN  165 (177)
T ss_pred             HHHhcCceeecCCceEEEEEecCHHHhccCcccccc
Confidence            999999999999999999999999999999998866

>smart00413 ETS erythroblast transformation specific domain

Probab=100.00  E-value=1.4e-42  Score=242.47  Aligned_cols=85  Identities=66%  Similarity=1.171  Sum_probs=81.2

Q ss_pred             ceehHHHHHHhhCCCCCCCCeeEec-CCCeEEEeChHHHHHHhhcccCCCCCcHHHHHHHHHHhhhcccEEecCceeeEE
Q psy18222         18 QVQLWQFLLELLGEPSNGGVIVWEG-SQGEFRLVDPDEVARRWGLRKSKPNMNYDKLSRALRYYYDKNIMTKVHGKRYAY   96 (130)
Q Consensus        18 ~~~LW~FLl~LL~d~~~~~~I~Wt~-~~~eFri~d~~~vArlWG~~Knk~~M~YeklsRsLR~yY~kgIl~Kv~g~rl~Y   96 (130)
                      +++||+||++||.||+++++|+||| .+|||+|+||++||+|||.+||+++||||||||||||||++|||+||+|++++|
T Consensus         1 ~~~Lw~FL~~LL~d~~~~~~I~W~~k~~g~Fkl~~~~~vA~lWG~~Knk~~M~YeklSRaLRyyy~~~il~Kv~g~rl~Y   80 (87)
T smart00413        1 QIQLWQFLLDLLLDPENGDIIRWTDRDGGEFKLVDPEEVARLWGQRKNKPNMNYEKLSRALRYYYKKNILRKVPGKRLVY   80 (87)
T ss_pred             CccHHHHHHHHHcCccCCCeEEeeCCCCCEEEecCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHhcCcEEecCCceEEE
Confidence            3689999999999999999999999 589999999999999999999999999999999999999999999999999999


Q ss_pred             Eecccc
Q psy18222         97 RFDFQG  102 (130)
Q Consensus        97 ~F~~~~  102 (130)
                      +|..++
T Consensus        81 ~F~~~~   86 (87)
T smart00413       81 KFVKNP   86 (87)
T ss_pred             ecCCCC
Confidence            997653

variation of the helix-turn-helix motif

>PF00178 Ets: Ets-domain; InterPro: IPR000418 Transcription factors are protein molecules that bind to specific DNA sequences in the genome, resulting in the induction or inhibition of gene transcription []

Probab=100.00  E-value=2e-40  Score=230.57  Aligned_cols=83  Identities=64%  Similarity=1.189  Sum_probs=78.8

Q ss_pred             ceehHHHHHHhhCCCCCCCCeeEec-CCCeEEEeChHHHHHHhhcccCCCCCcHHHHHHHHHHhhhcccEEecCceeeEE
Q psy18222         18 QVQLWQFLLELLGEPSNGGVIVWEG-SQGEFRLVDPDEVARRWGLRKSKPNMNYDKLSRALRYYYDKNIMTKVHGKRYAY   96 (130)
Q Consensus        18 ~~~LW~FLl~LL~d~~~~~~I~Wt~-~~~eFri~d~~~vArlWG~~Knk~~M~YeklsRsLR~yY~kgIl~Kv~g~rl~Y   96 (130)
                      +++||+||++||+|++++++|+||| +++||+|+||++||+|||.+||+++||||||||+||+||++|||+||+|++++|
T Consensus         1 ~~~Lw~FLl~LL~d~~~~~~I~Wt~~~~~eFki~d~~~vA~lWG~~k~~~~m~yeklsR~LR~yy~k~il~kv~g~r~~Y   80 (85)
T PF00178_consen    1 QIQLWQFLLELLEDPSNSDIIAWTGKRGGEFKIVDPEAVARLWGKHKNRPNMNYEKLSRALRYYYKKGILEKVKGQRLVY   80 (85)
T ss_dssp             S-SHHHHHHHHHHSGGGTTTEEEEETSTTEEEESSHHHHHHHHHHHTTSTT-SHHHHHHHHHHHHHTTSEEEETTSTTEE
T ss_pred             CccHHHHHHHHhcCccCCCeeEeeccCCCeEEecCHHHHHHHHHHHcCCccccHHHHHHHHHHHhhCCeEEecCCcEEEE
Confidence            4789999999999999999999999 789999999999999999999999999999999999999999999999999999


Q ss_pred             Eecc
Q psy18222         97 RFDF  100 (130)
Q Consensus        97 ~F~~  100 (130)
                      +|..
T Consensus        81 ~F~~   84 (85)
T PF00178_consen   81 RFVE   84 (85)
T ss_dssp             EESS
T ss_pred             ecCc
Confidence            9964

The ets oncogene is such a factor, possessing a region of 85-90 amino acids known as the ETS (erythroblast transformation specific) domain [, , ]. This domain is rich in positively-charged and aromatic residues, and binds to purine-rich segments of DNA. The ETS domain has been identified in other transcription factors such as PU.1, human erg, human elf-1, human elk-1, GA binding protein, and a number of others [, , ]. It is generally localized at the C terminus of the protein, with the exception of ELF-1, ELK-1, ELK-3, ELK-4 and ERF where it is found at the N terminus. NMR-analysis of the structure of the Ets domains revealed that it contains three alpha-helixes (1-3) and four-stranded beta-sheets (1-4) arranged in the order alpha1-beta1-beta2-alpha2-alpha3-beta3-beta4 forming a winged helix-turn-helix (wHTH) topology []. The third alpha-helix is responsive to contact to the major groove of the DNA. Different members of the Ets family proteins display distinct DNA binding specificities. The Ets domains and the flanking amino acid sequences of the proteins influence the binding affinity, and the alteration of a single amino acid in the Ets domain can change its DNA binding specificities. Avian leukemia virus E26 is a replication defective retrovirus that induces a mixed erythroid/myeloid leukemia in chickens.This virus carries two distinct oncogenes: v-myb and v-ets. The ets portion of this oncogene is required for the induction of erythroblastosis. V-ets and c-ets-1, its cellular progenitor, have been shown [] to be nuclear DNA-binding proteins. Ets-1 differs slightly from v-ets at its carboxy-terminal region. In most species where it has been sequenced, c-ets-1 exists in various isoforms generated by alternative splicing and differential phosphorylation.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1DUX_F 4AVP_B 1HBX_G 1BC7_C 1K6O_A 1BC8_C 1PUE_E 1FLI_A 2DAO_A 1WWX_A ....

>KOG3805|consensus

Probab=99.97  E-value=8.6e-32  Score=223.30  Aligned_cols=85  Identities=45%  Similarity=0.862  Sum_probs=79.9

Q ss_pred             CCceehHHHHHHhhCCCC-CCCCeeEec-CCCeEEEeChHHHHHHhhcccCCCCCcHHHHHHHHHHhhhcccEEecC-ce
Q psy18222         16 GGQVQLWQFLLELLGEPS-NGGVIVWEG-SQGEFRLVDPDEVARRWGLRKSKPNMNYDKLSRALRYYYDKNIMTKVH-GK   92 (130)
Q Consensus        16 ~g~~~LW~FLl~LL~d~~-~~~~I~Wt~-~~~eFri~d~~~vArlWG~~Knk~~M~YeklsRsLR~yY~kgIl~Kv~-g~   92 (130)
                      ..+++|||||++||..|. +++||+|+| .+|+|+|.+++.||++||++|||+.|||||||||||.|||+|||.|++ .+
T Consensus       270 kk~IhLwQFLkELL~sP~~~~~~IrWVDkdKGiFkiess~~lArlWG~RKNR~~MnYdKlsRslRqYyKkGiikK~ekkq  349 (361)
T KOG3805|consen  270 KKKIHLWQFLKELLYSPEQMGSCIRWVDKDKGIFKIESSEKLARLWGIRKNRKAMNYDKLSRSLRQYYKKGIIKKPEKKQ  349 (361)
T ss_pred             cceeeHHHHHHHHHhChhhhchheEeeccCCceEEeecHHHHHHHhhhhcccccccHHHHHHHHHHHhhcCccccchhhh
Confidence            337999999999999998 999999999 589999999999999999999999999999999999999999999997 55


Q ss_pred             eeEEEecc
Q psy18222         93 RYAYRFDF  100 (130)
Q Consensus        93 rl~Y~F~~  100 (130)
                      ||+|+|.+
T Consensus       350 rLvyqf~p  357 (361)
T KOG3805|consen  350 RLVYQFQP  357 (361)
T ss_pred             heeeeecC
Confidence            89999954

>KOG3804|consensus

Probab=99.95  E-value=1.9e-28  Score=208.87  Aligned_cols=82  Identities=48%  Similarity=0.982  Sum_probs=77.6

Q ss_pred             eehHHHHHHhhCCCCCC-CCeeEec-CCCeEEEeChHHHHHHhhcccCCCCCcHHHHHHHHHHhhhcccEEecCceeeEE
Q psy18222         19 VQLWQFLLELLGEPSNG-GVIVWEG-SQGEFRLVDPDEVARRWGLRKSKPNMNYDKLSRALRYYYDKNIMTKVHGKRYAY   96 (130)
Q Consensus        19 ~~LW~FLl~LL~d~~~~-~~I~Wt~-~~~eFri~d~~~vArlWG~~Knk~~M~YeklsRsLR~yY~kgIl~Kv~g~rl~Y   96 (130)
                      ..||+||++||.|++.. ..|.|++ ..|+|||||+++||||||.+||+.+||||||+|+|||||+++||+||.|+|++|
T Consensus       294 t~LWefl~~lL~d~~~~p~~IkWedr~~GVFrvVds~a~arlWG~~Kn~~~MtYekmsRAlRyYYk~~IL~kv~GqrLvy  373 (390)
T KOG3804|consen  294 TGLWEFLRQLLLDPNYNPGFIKWEDREKGVFRVVDSEALARLWGMHKNNSSMTYEKMSRALRYYYKREILRKVDGQRLVY  373 (390)
T ss_pred             chHHHHHHHHhcCCCcCCccccccccCCCeeEEecccHHHHHhcCcCCCCCcCHHHHhHHhhhhhhcceeecCCCceeeE
Confidence            48999999999999864 5999999 579999999999999999999999999999999999999999999999999999


Q ss_pred             Eecc
Q psy18222         97 RFDF  100 (130)
Q Consensus        97 ~F~~  100 (130)
                      +|.-
T Consensus       374 qF~k  377 (390)
T KOG3804|consen  374 QFVK  377 (390)
T ss_pred             Eecc
Confidence            9943

>KOG3804|consensus

Probab=98.88  E-value=3.6e-10  Score=97.12  Aligned_cols=85  Identities=39%  Similarity=0.763  Sum_probs=77.1

Q ss_pred             CCCceehHHHHHHhhCCCC-CCCCeeEec-CCCeEEEeChHHHHHHhhcccCCCCCcHHHHHHHHHHhhhcccEEecC--
Q psy18222         15 SGGQVQLWQFLLELLGEPS-NGGVIVWEG-SQGEFRLVDPDEVARRWGLRKSKPNMNYDKLSRALRYYYDKNIMTKVH--   90 (130)
Q Consensus        15 ~~g~~~LW~FLl~LL~d~~-~~~~I~Wt~-~~~eFri~d~~~vArlWG~~Knk~~M~YeklsRsLR~yY~kgIl~Kv~--   90 (130)
                      ..+...+|+|++.+|.|.. ....|.|+. .++.|+.+|...++.+||+++|++.|+|+.|.|++|+||..||+.||.  
T Consensus       168 p~~tp~~~~~l~~~~q~~~~~p~~~~~~~~~~~~~~~~~s~~~s~~~~a~sn~~~m~~~~m~~a~~~~~q~~il~~~~~~  247 (390)
T KOG3804|consen  168 PGNTPYLWEFLLDLLQDSATCPKPIKWTQREKGCFKLVDSKAVSKLWGAHSNKPDMNYETMGRALRYYPQRGILAKVEGV  247 (390)
T ss_pred             CCCCcchHHHHhhhhhcccCCCcccccccccccccccccCccccccchhhccCccccccccccccccccCCccccccchh
Confidence            3446789999999999986 478999999 689999999999999999999999999999999999999999999999  


Q ss_pred             ceeeEEEec
Q psy18222         91 GKRYAYRFD   99 (130)
Q Consensus        91 g~rl~Y~F~   99 (130)
                      +++..+++.
T Consensus       248 ~~~~~~q~~  256 (390)
T KOG3804|consen  248 LQRSCHQNK  256 (390)
T ss_pred             hhhhcccCC
Confidence            777777774

>PF00447 HSF_DNA-bind: HSF-type DNA-binding; InterPro: IPR000232 Heat shock factor (HSF) is a transcriptional activator of heat shock genes []: it binds specifically to heat shock promoter elements, which are palindromic sequences rich with repetitive purine and pyrimidine motifs []

Probab=97.21  E-value=0.0012  Score=46.35  Aligned_cols=65  Identities=23%  Similarity=0.420  Sum_probs=46.2

Q ss_pred             HHHHhhCCCCCCCCeeEecCCCeEEEeChHHHHHHhhcccCCCCCcHHHHHHHHHHhhhcccEEecCce
Q psy18222         24 FLLELLGEPSNGGVIVWEGSQGEFRLVDPDEVARRWGLRKSKPNMNYDKLSRALRYYYDKNIMTKVHGK   92 (130)
Q Consensus        24 FLl~LL~d~~~~~~I~Wt~~~~eFri~d~~~vArlWG~~Knk~~M~YeklsRsLR~yY~kgIl~Kv~g~   92 (130)
                      =|.++|+|++..++|+|.+.+..|.|.|++++++.-=.. --..-+|.++.|-|-.|   |.-....+.
T Consensus         5 kL~~~l~~~~~~~~I~W~~~G~~fiI~d~~~f~~~vLp~-~F~~~~~~SF~RQLn~y---GF~k~~~~~   69 (103)
T PF00447_consen    5 KLYEMLEDPENSDIIRWSPDGDSFIIHDPEEFEKEVLPK-YFKHSNFSSFVRQLNMY---GFKKVSSDS   69 (103)
T ss_dssp             HHHHHHCTTTTTTTCEECTTSSEEEES-HHHHHHHTHHH-HSST--HHHHHHHHHHT---TEEECC-SS
T ss_pred             HHHHHHcCCCCCCEEEEeCCCCEEEEeecHHHhhhcccc-ccCccccceeeeEeeee---eeEEEecCc
Confidence            467899999999999999999999999998887632211 11234799999999888   655555443

Under normal conditions, HSF is a homo-trimeric cytoplasmic protein, but heat shock activation results in relocalisation to the nucleus []. Each HSF monomer contains one C-terminal and three N-terminal leucine zipper repeats []. Point mutations in these regions result in disruption of cellular localisation, rendering the protein constitutively nuclear []. Two sequences flanking the N-terminal zippers fit the consensus of a bi- partite nuclear localisation signal (NLS). Interaction between the N- and C-terminal zippers may result in a structure that masks the NLS sequences: following activation of HSF, these may then be unmasked, resulting in relocalisation of the protein to the nucleus []. The DNA-binding component of HSF lies to the N terminus of the first NLS region, and is referred to as the HSF domain.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1FBQ_B 1FYL_B 1FBS_A 1FYM_B 3HTS_B 2HTS_A 3HSF_A 1FBU_B 1FYK_A 2LDU_A ....

>smart00415 HSF heat shock factor

Probab=96.96  E-value=0.0029  Score=44.86  Aligned_cols=58  Identities=29%  Similarity=0.442  Sum_probs=44.8

Q ss_pred             HHHHHhhCCCCCCCCeeEecCCCeEEEeChHHHHHHhhcccCCCCCcHHHHHHHHHHhh
Q psy18222         23 QFLLELLGEPSNGGVIVWEGSQGEFRLVDPDEVARRWGLRKSKPNMNYDKLSRALRYYY   81 (130)
Q Consensus        23 ~FLl~LL~d~~~~~~I~Wt~~~~eFri~d~~~vArlWG~~Knk~~M~YeklsRsLR~yY   81 (130)
                      .=|.++|+|++..++|+|+..+..|.|.|++++++---.+ --..-+|.++.|-|-.|-
T Consensus         7 ~kL~~~l~~~~~~~iI~W~~~G~~f~I~d~~~f~~~vLp~-~Fk~~~~~SF~RqLn~yG   64 (105)
T smart00415        7 TKLYLLVEDPSTDKIISWSPSGKSFVIWDPEEFAKNLLPR-YFKHNNFSSFVRQLNMYG   64 (105)
T ss_pred             HHHHHHHhCCCCCCEEEECCCCCEEEEcCHHHHHHHHHHH-hcCCCCHHHHHHHHHhcC
Confidence            3467889999999999999999999999998776532221 113446999999998883

>COG5169 HSF1 Heat shock transcription factor [Transcription]

Probab=94.66  E-value=0.033  Score=46.51  Aligned_cols=51  Identities=29%  Similarity=0.584  Sum_probs=38.1

Q ss_pred             HHHhhCCCCCCCCeeEecCCCeEEEeChHHHHH----HhhcccCCCCCcHHHHHHHHHHh
Q psy18222         25 LLELLGEPSNGGVIVWEGSQGEFRLVDPDEVAR----RWGLRKSKPNMNYDKLSRALRYY   80 (130)
Q Consensus        25 Ll~LL~d~~~~~~I~Wt~~~~eFri~d~~~vAr----lWG~~Knk~~M~YeklsRsLR~y   80 (130)
                      |.++|+|+++.+.|+|+..+..|-|.|+++++.    +...|.     ++.++-|-|--|
T Consensus        17 Ly~iLe~~e~~k~I~Ws~~G~sfvI~~~~~F~~~iLpr~FKh~-----NfaSFVRQLN~Y   71 (282)
T COG5169          17 LYQILEEPEYYKLIQWSPDGRSFVILDPEEFTKVILPRYFKHG-----NFASFVRQLNKY   71 (282)
T ss_pred             HHHHhcCcccCCceEECCCCCEEEEeCcchhhhhhhhhhhccc-----CHHHHHHHHHhc
Confidence            557789999999999999999999999876664    344444     455565555444

>KOG0627|consensus

Probab=90.24  E-value=0.28  Score=40.24  Aligned_cols=36  Identities=31%  Similarity=0.591  Sum_probs=31.4

Q ss_pred             HHHhhCCCCCCCCeeEecCCCeEEEeChHHHHHHhh
Q psy18222         25 LLELLGEPSNGGVIVWEGSQGEFRLVDPDEVARRWG   60 (130)
Q Consensus        25 Ll~LL~d~~~~~~I~Wt~~~~eFri~d~~~vArlWG   60 (130)
                      |.++++||++.++|+|+..+.-|-|.|+.++|+.=-
T Consensus        19 ~y~~v~Dps~~~iisWs~~g~sFvv~d~~~F~~~~L   54 (304)
T KOG0627|consen   19 LYEMVEDPSTDEIISWSPSGNSFVIWNPEEFAKVLL   54 (304)
T ss_pred             HHHHhcCCCCCCceEECCCCCccccCCHHHHHHHHh
Confidence            457899999999999999999999999998887544

>PF00605 IRF: Interferon regulatory factor transcription factor; InterPro: IPR001346 Viral infections induce the expression of type I interferons (IFN-alpha and IFN-beta) genes

Probab=84.68  E-value=3  Score=30.16  Aligned_cols=62  Identities=16%  Similarity=0.406  Sum_probs=46.6

Q ss_pred             eehHHHHHHhhCCCCCCCCeeEec-CCCeEEEe------------ChHHHHHHhhcccCC-----CCCcHHHHHHHHHHh
Q psy18222         19 VQLWQFLLELLGEPSNGGVIVWEG-SQGEFRLV------------DPDEVARRWGLRKSK-----PNMNYDKLSRALRYY   80 (130)
Q Consensus        19 ~~LW~FLl~LL~d~~~~~~I~Wt~-~~~eFri~------------d~~~vArlWG~~Knk-----~~M~YeklsRsLR~y   80 (130)
                      ++|-.+|.+.++++.+.+ +.|+| ....|+|-            +..++=+.|+.++|+     ...+..+..+.+|.=
T Consensus         2 ~rlr~WL~~~i~sg~ypG-L~W~d~~kt~FrIPWkH~~r~~~~~~~D~~iFkaWA~~~Gk~~~g~~~~dp~~wKtnfRcA   80 (109)
T PF00605_consen    2 LRLRPWLIEQIDSGRYPG-LEWLDEEKTIFRIPWKHAGRQDWDQEEDAKIFKAWAVHRGKYRPGIDKPDPSTWKTNFRCA   80 (109)
T ss_dssp             --HHHHHHHHHHHTCSTT-SEESSTTSSEEEEETTSTTSTTSSHCGGGHHHHHHHHHTTSS-CTTCSSHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHhcCCCCC-cEEEcCCCCEEEeeCccCCCCCccccchHHHHHHHHHHhcccCCCCCCCCHHHHHHHHHHH
Confidence            578899999999999965 59999 57999995            234788999999986     246777766666654


Q ss_pred             h
Q psy18222         81 Y   81 (130)
Q Consensus        81 Y   81 (130)
                      -
T Consensus        81 L   81 (109)
T PF00605_consen   81 L   81 (109)
T ss_dssp             H
T ss_pred             H
Confidence            4

The induction is due to the transcriptional activation of the IFN genes. Interferon regulatory factor I (IRF-1) is one of the transcription factors responsible for that activation. IRF-1 binds to an upstream regulatory cis element, known as the interferon consensus sequence (ICS), which is found in the promoters of type I IFN and IFN-inducible MHC class I genes. Interferon regulatory factor 2 (IRF-2) is a protein that also interacts with the ICS, but that does not function as an activator; rather, it suppresses the function of IRF-1 under certain circumstances []. These proteins share a highly conserved N-terminal domain of about 100 amino acid residues which is involved in DNA-binding and which contain five conserved tryptophans. This domain is known as a 'tryptophan pentad repeat' or a 'tryptophan cluster' and is also present in: Interferon consensus sequence binding protein (ICSBP) [], a transcription factor expressed predominantly in lymphoid tissues and induced by IFN-gamma that also binds to the ICS. Transcriptional regulator ISGF3 gamma subunit []. ISGF3 is responsible for the initial stimulation of interferon-alpha-responsive genes. It recognises and binds to the interferon-stimulated response element (ISRE) within the regulatory sequences of target genes. Interferon regulatory factor 3 (IRF-3). Interferon regulatory factor 4 (IRF-4) which binds to the interferon- stimulated response element (ISRE) of the MHC class I promoter. Interferon regulatory factor 5 (IRF-5). Interferon regulatory factor 6 (IRF-6). Interferon regulatory factor 7 (IRF-7). Gamma Herpesviruses vIRF-1, -2 and -3, proteins with homology to the cellular transcription factors of the IRF family []. Neither vIRF-1 nor vIRF-2 bind to DNA with the same specificity as cellular IRFs, indicating that if vIRFs are DNA-binding proteins, their binding has a pattern distinct from that of the cellular IRFs. Whether vIRF-3 can bind DNA with the same specificity as cellular IRFs is not known. The IRF tryptophan pentad repeat DNA-binding domain has an alpha/beta architecture comprising a cluster of three alpha-helices (alpha1-alpha3) flanked on one side by a mixed four-stranded beta-sheet (beta1-beta4). It forms a helix-turn-helix motif that binds to ISRE consensus sequences found in target promoters. Three of the tryptophan residues contact DNA by recognising a GAAA sequence []. This entry represents the IRF tryptophan pentad repeat DNA-binding domain.; GO: 0000975 regulatory region DNA binding; PDB: 2IRF_H 1IRF_A 1IRG_A 2DLL_A 3QU3_C 2PI0_D 2O6G_G 1T2K_A 2O61_A 3QU6_C ....

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	130
2ypr_A	102	Crystal Structure Of The Dna Binding Ets Domain Of		2e-42
1fli_A	98	Dna-Binding Domain Of Fli-1 Length = 98		3e-40
2nny_A	171	Crystal Structure Of The Ets1 Dimer Dna Complex. Le		5e-30
3mfk_A	162	Ets1 Complex With Stromelysin-1 Promoter Dna Length		2e-29
3ri4_A	163	Ets1 Cooperative Binding To Widely Separated Sites		2e-29
1mdm_B	161	Inhibited Fragment Of Ets-1 And Paired Domain Of Pa		2e-29
1r36_A	140	Nmr-Based Structure Of Autoinhibited Murine Ets-1 D		3e-29
1gvj_A	146	Ets-1 Dna Binding And Autoinhibitory Domains Length		3e-29
1md0_A	141	Crystal Structure Of An Inhibited Fragment Of Ets-1		3e-29
2stt_A	96	Solution Nmr Structure Of The Human Ets1DNA COMPLEX		2e-28
1k78_B	110	Pax5(1-149)+ets-1(331-440)+dna Length = 110		3e-28
4avp_A	106	Crystal Structure Of The Dna-Binding Domain Of Huma		1e-27
1dux_C	94	Elk-1DNA STRUCTURE REVEALS HOW RESIDUES DISTAL FROM		4e-26
1awc_A	110	Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA Length = 1		3e-24
1bc7_C	93	Serum Response Factor Accessory Protein 1a (Sap-1)D		8e-21
1hbx_G	157	Ternary Complex Of Sap-1 And Srf With Specific Sre		1e-20
2dao_A	118	Solution Structure Of Ets Domain Transcriptional Fa		6e-16
1yo5_C	97	Analysis Of The 2.0a Crystal Structure Of The Prote		1e-14
3jtg_A	103	Crystal Structure Of Mouse Elf3 C-Terminal Dna-Bind		3e-14
2lf7_A	106	Intramolecular Regulation Of The Ets Domain Within		3e-14
2lf8_A	128	Intramolecular Regulation Of The Ets Domain Within		4e-14
1wwx_A	107	Solution Structure Of The Ets-Domain Of The Ets Dom		6e-13
1pue_E	89	Pu.1 Ets Domain-Dna Complex Length = 89		3e-05

>pdb|2YPR|A Chain A, Crystal Structure Of The Dna Binding Ets Domain Of Human Protein Fev Length = 102

Iteration: 1
 Score =  167 bits (423), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 76/92 (82%), Positives = 81/92 (88%)
Query: 17  GQVQLWQFLLELLGEPSNGGVIVWEGSQGEFRLVDPDEVARRWGLRKSKPNMNYDKLSRA 76
           GQ+QLWQFLLELL + +N G I WEG  GEF+L DPDEVARRWG RKSKPNMNYDKLSRA
Sbjct: 6   GQIQLWQFLLELLADRANAGCIAWEGGHGEFKLTDPDEVARRWGERKSKPNMNYDKLSRA 65
Query: 77  LRYYYDKNIMTKVHGKRYAYRFDFQGLMLACQ 108
           LRYYYDKNIM+KVHGKRYAYRFDFQGL  ACQ
Sbjct: 66  LRYYYDKNIMSKVHGKRYAYRFDFQGLAQACQ 97

>pdb|1FLI|A Chain A, Dna-Binding Domain Of Fli-1 Length = 98

Iteration: 1
 Score =  160 bits (404), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 71/92 (77%), Positives = 79/92 (85%)
Query: 17  GQVQLWQFLLELLGEPSNGGVIVWEGSQGEFRLVDPDEVARRWGLRKSKPNMNYDKLSRA 76
           GQ+QLWQFLLELL + +N   I WEG+ GEF++ DPDEVARRWG RKSKPNMNYDKLSRA
Sbjct: 4   GQIQLWQFLLELLSDSANASCITWEGTNGEFKMTDPDEVARRWGERKSKPNMNYDKLSRA 63
Query: 77  LRYYYDKNIMTKVHGKRYAYRFDFQGLMLACQ 108
           LRYYYDKNIMTKVHGKRYAY+FDF G+  A Q
Sbjct: 64  LRYYYDKNIMTKVHGKRYAYKFDFHGIAQALQ 95

>pdb|2NNY|A Chain A, Crystal Structure Of The Ets1 Dimer Dna Complex. Length = 171

Iteration: 1
 Score =  125 bits (315), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 63/103 (61%), Positives = 73/103 (70%), Gaps = 3/103 (2%)
Query: 4   LACAVSRGLSGSGGQVQLWQFLLELLGEPSNGGVIVWEGSQGEFRLVDPDEVARRWGLRK 63
           +  A   G +GSG  +QLWQFLLELL + S+   I W G   EF+L DPDEVARRWG RK
Sbjct: 51  IPAAALAGYTGSG-PIQLWQFLLELLTDKSSQSFISWTGDGWEFKLSDPDEVARRWGKRK 109
Query: 64  SKPNMNYDKLSRALRYYYDKNIMTKVHGKRYAYRF--DFQGLM 104
           +KP MNY+KLSR LRYYYDKNI+ K  GKRY YRF  D Q L+
Sbjct: 110 NKPKMNYEKLSRGLRYYYDKNIIHKTAGKRYVYRFVSDLQSLL 152

>pdb|3MFK|A Chain A, Ets1 Complex With Stromelysin-1 Promoter Dna Length = 162

Iteration: 1
 Score =  123 bits (309), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 63/103 (61%), Positives = 72/103 (69%), Gaps = 3/103 (2%)
Query: 4   LACAVSRGLSGSGGQVQLWQFLLELLGEPSNGGVIVWEGSQGEFRLVDPDEVARRWGLRK 63
           +  A   G +GSG  +QLWQFLLELL + S    I W G   EF+L DPDEVARRWG RK
Sbjct: 42  IPAAALAGYTGSG-PIQLWQFLLELLTDKSCQSFISWTGDGWEFKLSDPDEVARRWGKRK 100
Query: 64  SKPNMNYDKLSRALRYYYDKNIMTKVHGKRYAYRF--DFQGLM 104
           +KP MNY+KLSR LRYYYDKNI+ K  GKRY YRF  D Q L+
Sbjct: 101 NKPKMNYEKLSRGLRYYYDKNIIHKTAGKRYVYRFVCDLQSLL 143

>pdb|3RI4|A Chain A, Ets1 Cooperative Binding To Widely Separated Sites On Promoter Dna Length = 163

Iteration: 1
 Score =  123 bits (309), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 63/103 (61%), Positives = 72/103 (69%), Gaps = 3/103 (2%)
Query: 4   LACAVSRGLSGSGGQVQLWQFLLELLGEPSNGGVIVWEGSQGEFRLVDPDEVARRWGLRK 63
           +  A   G +GSG  +QLWQFLLELL + S    I W G   EF+L DPDEVARRWG RK
Sbjct: 43  IPAAALAGYTGSG-PIQLWQFLLELLTDKSCQSFISWTGDGWEFKLSDPDEVARRWGKRK 101
Query: 64  SKPNMNYDKLSRALRYYYDKNIMTKVHGKRYAYRF--DFQGLM 104
           +KP MNY+KLSR LRYYYDKNI+ K  GKRY YRF  D Q L+
Sbjct: 102 NKPKMNYEKLSRGLRYYYDKNIIHKTAGKRYVYRFVCDLQSLL 144

>pdb|1MDM|B Chain B, Inhibited Fragment Of Ets-1 And Paired Domain Of Pax5 Bound To Dna Length = 161

Iteration: 1
 Score =  123 bits (309), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 63/103 (61%), Positives = 72/103 (69%), Gaps = 3/103 (2%)
Query: 4   LACAVSRGLSGSGGQVQLWQFLLELLGEPSNGGVIVWEGSQGEFRLVDPDEVARRWGLRK 63
           +  A   G +GSG  +QLWQFLLELL + S    I W G   EF+L DPDEVARRWG RK
Sbjct: 42  IPAAALAGYTGSG-PIQLWQFLLELLTDKSCQSFISWTGDGWEFKLSDPDEVARRWGKRK 100
Query: 64  SKPNMNYDKLSRALRYYYDKNIMTKVHGKRYAYRF--DFQGLM 104
           +KP MNY+KLSR LRYYYDKNI+ K  GKRY YRF  D Q L+
Sbjct: 101 NKPKMNYEKLSRGLRYYYDKNIIHKTAGKRYVYRFVCDLQSLL 143

>pdb|1R36|A Chain A, Nmr-Based Structure Of Autoinhibited Murine Ets-1 Deltan301 Length = 140

Iteration: 1
 Score =  123 bits (309), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 63/103 (61%), Positives = 72/103 (69%), Gaps = 3/103 (2%)
Query: 4   LACAVSRGLSGSGGQVQLWQFLLELLGEPSNGGVIVWEGSQGEFRLVDPDEVARRWGLRK 63
           +  A   G +GSG  +QLWQFLLELL + S    I W G   EF+L DPDEVARRWG RK
Sbjct: 21  IPAAALAGYTGSG-PIQLWQFLLELLTDKSCQSFISWTGDGWEFKLSDPDEVARRWGKRK 79
Query: 64  SKPNMNYDKLSRALRYYYDKNIMTKVHGKRYAYRF--DFQGLM 104
           +KP MNY+KLSR LRYYYDKNI+ K  GKRY YRF  D Q L+
Sbjct: 80  NKPKMNYEKLSRGLRYYYDKNIIHKTAGKRYVYRFVSDLQSLL 122

>pdb|1GVJ|A Chain A, Ets-1 Dna Binding And Autoinhibitory Domains Length = 146

Iteration: 1
 Score =  123 bits (308), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 63/103 (61%), Positives = 72/103 (69%), Gaps = 3/103 (2%)
Query: 4   LACAVSRGLSGSGGQVQLWQFLLELLGEPSNGGVIVWEGSQGEFRLVDPDEVARRWGLRK 63
           +  A   G +GSG  +QLWQFLLELL + S    I W G   EF+L DPDEVARRWG RK
Sbjct: 26  IPAAALAGYTGSG-PIQLWQFLLELLTDKSCQSFISWTGDGWEFKLSDPDEVARRWGKRK 84
Query: 64  SKPNMNYDKLSRALRYYYDKNIMTKVHGKRYAYRF--DFQGLM 104
           +KP MNY+KLSR LRYYYDKNI+ K  GKRY YRF  D Q L+
Sbjct: 85  NKPKMNYEKLSRGLRYYYDKNIIHKTAGKRYVYRFVCDLQSLL 127

>pdb|1MD0|A Chain A, Crystal Structure Of An Inhibited Fragment Of Ets-1 Length = 141

Iteration: 1
 Score =  123 bits (308), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 63/103 (61%), Positives = 72/103 (69%), Gaps = 3/103 (2%)
Query: 4   LACAVSRGLSGSGGQVQLWQFLLELLGEPSNGGVIVWEGSQGEFRLVDPDEVARRWGLRK 63
           +  A   G +GSG  +QLWQFLLELL + S    I W G   EF+L DPDEVARRWG RK
Sbjct: 22  IPAAALAGYTGSG-PIQLWQFLLELLTDKSCQSFISWTGDGWEFKLSDPDEVARRWGKRK 80
Query: 64  SKPNMNYDKLSRALRYYYDKNIMTKVHGKRYAYRF--DFQGLM 104
           +KP MNY+KLSR LRYYYDKNI+ K  GKRY YRF  D Q L+
Sbjct: 81  NKPKMNYEKLSRGLRYYYDKNIIHKTAGKRYVYRFVCDLQSLL 123

>pdb|2STT|A Chain A, Solution Nmr Structure Of The Human Ets1DNA COMPLEX, 25 Structures Length = 96

Iteration: 1
 Score =  120 bits (302), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 60/95 (63%), Positives = 68/95 (71%), Gaps = 1/95 (1%)
Query: 4  LACAVSRGLSGSGGQVQLWQFLLELLGEPSNGGVIVWEGSQGEFRLVDPDEVARRWGLRK 63
          +  A   G +GSG  +QLWQFLLELL + S    I W G   EF+L DPDEVARRWG RK
Sbjct: 2  IPAAALAGYTGSG-PIQLWQFLLELLTDKSCQSFISWTGDGWEFKLSDPDEVARRWGKRK 60
Query: 64 SKPNMNYDKLSRALRYYYDKNIMTKVHGKRYAYRF 98
          +KP MNY+KLSR LRYYYDKNI+ K  GKRY YRF
Sbjct: 61 NKPKMNYEKLSRGLRYYYDKNIIHKTAGKRYVYRF 95

>pdb|1K78|B Chain B, Pax5(1-149)+ets-1(331-440)+dna Length = 110

Iteration: 1
 Score =  120 bits (300), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 59/90 (65%), Positives = 66/90 (73%), Gaps = 2/90 (2%)
Query: 17  GQVQLWQFLLELLGEPSNGGVIVWEGSQGEFRLVDPDEVARRWGLRKSKPNMNYDKLSRA 76
           G +QLWQFLLELL + S    I W G   EF+L DPDEVARRWG RK+KP MNY+KLSR 
Sbjct: 3   GPIQLWQFLLELLTDKSCQSFISWTGDGWEFKLSDPDEVARRWGKRKNKPKMNYEKLSRG 62
Query: 77  LRYYYDKNIMTKVHGKRYAYRF--DFQGLM 104
           LRYYYDKNI+ K  GKRY YRF  D Q L+
Sbjct: 63  LRYYYDKNIIHKTAGKRYVYRFVCDLQSLL 92

>pdb|4AVP|A Chain A, Crystal Structure Of The Dna-Binding Domain Of Human Etv1. Length = 106

Iteration: 1
 Score =  117 bits (294), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 51/82 (62%), Positives = 66/82 (80%)
Query: 17 GQVQLWQFLLELLGEPSNGGVIVWEGSQGEFRLVDPDEVARRWGLRKSKPNMNYDKLSRA 76
          G +QLWQFL+ LL +PSN   I W G   EF+L++P+EVARRWG++K++P MNYDKLSR+
Sbjct: 10 GSLQLWQFLVALLDDPSNSHFIAWTGRGMEFKLIEPEEVARRWGIQKNRPAMNYDKLSRS 69
Query: 77 LRYYYDKNIMTKVHGKRYAYRF 98
          LRYYY+K IM KV G+RY Y+F
Sbjct: 70 LRYYYEKGIMQKVAGERYVYKF 91

>pdb|1DUX|C Chain C, Elk-1DNA STRUCTURE REVEALS HOW RESIDUES DISTAL FROM DNA- Binding Surface Affect Dna-Recognition Length = 94

Iteration: 1
 Score =  112 bits (281), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 54/81 (66%), Positives = 64/81 (79%), Gaps = 1/81 (1%)
Query: 19 VQLWQFLLELLGEPSNGGVIVWEGSQG-EFRLVDPDEVARRWGLRKSKPNMNYDKLSRAL 77
          V LWQFLL+LL E  NG +I W    G EF+LVD +EVAR WGLRK+K NMNYDKLSRAL
Sbjct: 5  VTLWQFLLQLLREQGNGHIISWTSRDGGEFKLVDAEEVARLWGLRKNKTNMNYDKLSRAL 64
Query: 78 RYYYDKNIMTKVHGKRYAYRF 98
          RYYYDKNI+ KV G+++ Y+F
Sbjct: 65 RYYYDKNIIRKVSGQKFVYKF 85

>pdb|1AWC|A Chain A, Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA Length = 110

Iteration: 1
 Score =  106 bits (265), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 47/80 (58%), Positives = 61/80 (76%)
Query: 19 VQLWQFLLELLGEPSNGGVIVWEGSQGEFRLVDPDEVARRWGLRKSKPNMNYDKLSRALR 78
          +QLWQFLLELL +      I W G +GEF+L  P+ VA++WG RK+KP MNY+KLSRALR
Sbjct: 1  IQLWQFLLELLTDKDARDCISWVGDEGEFKLNQPELVAQKWGQRKNKPTMNYEKLSRALR 60
Query: 79 YYYDKNIMTKVHGKRYAYRF 98
          YYYD +++ KV GKR+ Y+F
Sbjct: 61 YYYDGDMICKVQGKRFVYKF 80

>pdb|1BC7|C Chain C, Serum Response Factor Accessory Protein 1a (Sap-1)DNA Complex Length = 93

Iteration: 1
 Score = 95.5 bits (236), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 40/68 (58%), Positives = 55/68 (80%)
Query: 31 EPSNGGVIVWEGSQGEFRLVDPDEVARRWGLRKSKPNMNYDKLSRALRYYYDKNIMTKVH 90
          +P N  +I W  + G+F+L+  +EVAR WG+RK+KPNMNYDKLSRALRYYY KNI+ KV+
Sbjct: 17 KPQNKHMICWTSNDGQFKLLQAEEVARLWGIRKNKPNMNYDKLSRALRYYYVKNIIKKVN 76
Query: 91 GKRYAYRF 98
          G+++ Y+F
Sbjct: 77 GQKFVYKF 84

>pdb|1HBX|G Chain G, Ternary Complex Of Sap-1 And Srf With Specific Sre Dna Length = 157

Iteration: 1
 Score = 94.7 bits (234), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 40/68 (58%), Positives = 55/68 (80%)
Query: 31 EPSNGGVIVWEGSQGEFRLVDPDEVARRWGLRKSKPNMNYDKLSRALRYYYDKNIMTKVH 90
          +P N  +I W  + G+F+L+  +EVAR WG+RK+KPNMNYDKLSRALRYYY KNI+ KV+
Sbjct: 18 KPQNKHMICWTSNDGQFKLLQAEEVARLWGIRKNKPNMNYDKLSRALRYYYVKNIIKKVN 77
Query: 91 GKRYAYRF 98
          G+++ Y+F
Sbjct: 78 GQKFVYKF 85

>pdb|2DAO|A Chain A, Solution Structure Of Ets Domain Transcriptional Factor Etv6 Protein Length = 118

Iteration: 1
 Score = 79.0 bits (193), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 40/89 (44%), Positives = 57/89 (64%), Gaps = 1/89 (1%)
Query: 11 GLSGSGGQVQLWQFLLELLGEPSNGGVIVWEGSQGE-FRLVDPDEVARRWGLRKSKPNMN 69
          G SGS G   LW ++ +LL +      I WE  + + FR+VDP+ +AR WG  K++ NM 
Sbjct: 1  GSSGSSGCRLLWDYVYQLLSDSRYENFIRWEDKESKIFRIVDPNGLARLWGNHKNRTNMT 60
Query: 70 YDKLSRALRYYYDKNIMTKVHGKRYAYRF 98
          Y+K+SRALR+YY  NI+ K  G+R  +RF
Sbjct: 61 YEKMSRALRHYYKLNIIRKEPGQRLLFRF 89

>pdb|1YO5|C Chain C, Analysis Of The 2.0a Crystal Structure Of The Protein-Dna Complex Of Human Pdef Ets Domain Bound To The Prostate Specific Antigen Regulatory Site Length = 97

Iteration: 1
 Score = 74.7 bits (182), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 44/92 (47%), Positives = 58/92 (63%), Gaps = 4/92 (4%)
Query: 11 GLSGSGGQ-VQLWQFLLELLGEP-SNGGVIVW-EGSQGEFRLVDPDEVARRWGLRKSKPN 67
           L   G Q + LWQFL ELL +P S G  I W    +G F++ D  +VAR WG+RK++P 
Sbjct: 2  SLDALGSQPIHLWQFLKELLLKPHSYGRFIRWLNKEKGIFKIEDSAQVARLWGIRKNRPA 61
Query: 68 MNYDKLSRALRYYYDKNIMTKVH-GKRYAYRF 98
          MNYDKLSR++R YY K I+ K    +R  Y+F
Sbjct: 62 MNYDKLSRSIRQYYKKGIIRKPDISQRLVYQF 93

>pdb|3JTG|A Chain A, Crystal Structure Of Mouse Elf3 C-Terminal Dna-Binding Domai Complex With Type Ii Tgf-Beta Receptor Promoter Dna Length = 103

Iteration: 1
 Score = 73.6 bits (179), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 34/82 (41%), Positives = 53/82 (64%), Gaps = 2/82 (2%)
Query: 19 VQLWQFLLELLGEPS-NGGVIVWEG-SQGEFRLVDPDEVARRWGLRKSKPNMNYDKLSRA 76
            LW+F+ ++L  P  N G++ WE   +G F+ +  + VA+ WG +K   NM Y+KLSRA
Sbjct: 5  THLWEFIRDILIHPELNEGLMKWENRHEGVFKFLRSEAVAQLWGQKKKNSNMTYEKLSRA 64
Query: 77 LRYYYDKNIMTKVHGKRYAYRF 98
          +RYYY + I+ +V G+R  Y+F
Sbjct: 65 MRYYYKREILERVDGRRLVYKF 86

>pdb|2LF7|A Chain A, Intramolecular Regulation Of The Ets Domain Within Etv6 Sequence R335 To Q436 Length = 106

Iteration: 1
 Score = 73.6 bits (179), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 35/79 (44%), Positives = 52/79 (65%), Gaps = 1/79 (1%)
Query: 21 LWQFLLELLGEPSNGGVIVWEGSQGE-FRLVDPDEVARRWGLRKSKPNMNYDKLSRALRY 79
          LW ++ +LL +      I WE  + + FR+VDP+ +AR WG  K++ NM Y+K+SRALR+
Sbjct: 7  LWDYVYQLLSDSRYENFIRWEDKESKIFRIVDPNGLARLWGNHKNRTNMTYEKMSRALRH 66
Query: 80 YYDKNIMTKVHGKRYAYRF 98
          YY  NI+ K  G+R  +RF
Sbjct: 67 YYKLNIIRKEPGQRLLFRF 85

>pdb|2LF8|A Chain A, Intramolecular Regulation Of The Ets Domain Within Etv6 Sequence R335 To R458 Length = 128

Iteration: 1
 Score = 73.2 bits (178), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 35/79 (44%), Positives = 52/79 (65%), Gaps = 1/79 (1%)
Query: 21 LWQFLLELLGEPSNGGVIVWEGSQGE-FRLVDPDEVARRWGLRKSKPNMNYDKLSRALRY 79
          LW ++ +LL +      I WE  + + FR+VDP+ +AR WG  K++ NM Y+K+SRALR+
Sbjct: 7  LWDYVYQLLSDSRYENFIRWEDKESKIFRIVDPNGLARLWGNHKNRTNMTYEKMSRALRH 66
Query: 80 YYDKNIMTKVHGKRYAYRF 98
          YY  NI+ K  G+R  +RF
Sbjct: 67 YYKLNIIRKEPGQRLLFRF 85

>pdb|1WWX|A Chain A, Solution Structure Of The Ets-Domain Of The Ets Domain Transcription Factor Length = 107

Iteration: 1
 Score = 69.3 bits (168), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 37/81 (45%), Positives = 51/81 (62%), Gaps = 3/81 (3%)
Query: 20 QLWQFLLELLGEPS-NGGVIVWEG-SQGEFRLVDPDEVARRWGLRKSKPNMNYDKLSRAL 77
           LW+F+ +LL  P  N G++ WE   QG FR+V  + +A+ WG RK    M Y+KLSRAL
Sbjct: 10 HLWEFVRDLLLSPEENCGILEWEDREQGIFRVVKSEALAKMWGQRKKNDRMTYEKLSRAL 69
Query: 78 RYYYDKNIMTKVHGKRYAYRF 98
          RYYY   I+ +V  +R  Y+F
Sbjct: 70 RYYYKTGILERVD-RRLVYKF 89

>pdb|1PUE|E Chain E, Pu.1 Ets Domain-Dna Complex Length = 89

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 29/85 (34%), Positives = 49/85 (57%), Gaps = 5/85 (5%)
Query: 18 QVQLWQFLLELLGEPSNGGVIVW-EGSQGEFRLVDP--DEVARRWGLRK-SKPNMNYDKL 73
          +++L+QFLL+LL        I W +  +G F+      + +A RWG++K ++  M Y+K+
Sbjct: 1  KIRLYQFLLDLLRSGDMKDSIWWVDKDKGTFQFSSKHKEALAHRWGIQKGNRKKMTYEKM 60
Query: 74 SRALRYYYDKNIMTKVHGKRYAYRF 98
          +RALR Y     + KV  K+  Y+F
Sbjct: 61 ARALRNYGKTGEVKKVK-KKLTYQF 84

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	130
1fli_A	98	FLI-1; transcription/DNA; NMR {Homo sapiens} SCOP:	7e-42
1hbx_G	157	ETS-domain protein ELK-4; gene regulation, transcr	2e-40
1bc8_C	93	SAP-1, protein (SAP-1 ETS domain); DNA-binding dom	4e-38
2nny_A	171	C-ETS-1 protein, P54; protein-DNA complex, transcr	1e-37
2dao_A	118	Transcription factor ETV6; ETS domain, structural	2e-37
1gvj_A	146	C-ETS-1 protein, P54; transcription, autoinhibitio	1e-36
2lf8_A	128	Transcription factor ETV6; auto-inhibition; NMR {M	2e-36
1wwx_A	107	E74-like factor 5 ESE-2B; DNA binding, transcripti	4e-35
4avp_A	106	ETS translocation variant 1; transcription, transc	2e-34
3jtg_A	103	ETS-related transcription factor ELF-3; ELF3, prot	2e-34
1awc_A	110	Protein (GA binding protein alpha); complex (trans	5e-34
1yo5_C	97	SAM pointed domain containing ETS transcription fa	8e-34
1pue_E	89	Protein (transcription factor PU.1 (TF PU.1)); com	2e-30

>1fli_A FLI-1; transcription/DNA; NMR {Homo sapiens} SCOP: a.4.5.21 Length = 98

 Score =  133 bits (335), Expect = 7e-42
 Identities = 71/92 (77%), Positives = 79/92 (85%)

Query: 17  GQVQLWQFLLELLGEPSNGGVIVWEGSQGEFRLVDPDEVARRWGLRKSKPNMNYDKLSRA 76
           GQ+QLWQFLLELL + +N   I WEG+ GEF++ DPDEVARRWG RKSKPNMNYDKLSRA
Sbjct: 4   GQIQLWQFLLELLSDSANASCITWEGTNGEFKMTDPDEVARRWGERKSKPNMNYDKLSRA 63

Query: 77  LRYYYDKNIMTKVHGKRYAYRFDFQGLMLACQ 108
           LRYYYDKNIMTKVHGKRYAY+FDF G+  A Q
Sbjct: 64  LRYYYDKNIMTKVHGKRYAYKFDFHGIAQALQ 95

>1hbx_G ETS-domain protein ELK-4; gene regulation, transcription complex; 3.15A {Homo sapiens} SCOP: a.4.5.21 Length = 157

 Score =  131 bits (330), Expect = 2e-40
 Identities = 52/109 (47%), Positives = 72/109 (66%)

Query: 14  GSGGQVQLWQFLLELLGEPSNGGVIVWEGSQGEFRLVDPDEVARRWGLRKSKPNMNYDKL 73
           GS   + LWQFLL+LL +P N  +I W  + G+F+L+  +EVAR WG+RK+KPNMNYDKL
Sbjct: 1   GSDSAITLWQFLLQLLQKPQNKHMICWTSNDGQFKLLQAEEVARLWGIRKNKPNMNYDKL 60

Query: 74  SRALRYYYDKNIMTKVHGKRYAYRFDFQGLMLACQASNTSDAYKLHQTL 122
           SRALRYYY KNI+ KV+G+++ Y+F     +L              ++L
Sbjct: 61  SRALRYYYVKNIIKKVNGQKFVYKFVSYPEILNMDPMTVGRIEGDCESL 109

>1bc8_C SAP-1, protein (SAP-1 ETS domain); DNA-binding domain, winged helix-turn-helix, DNA-binding specificity, transcription/DNA complex; HET: DNA; 1.93A {Homo sapiens} SCOP: a.4.5.21 PDB: 1bc7_C* 1k6o_A 1dux_C* Length = 93

 Score =  123 bits (309), Expect = 4e-38
 Identities = 48/83 (57%), Positives = 65/83 (78%)

Query: 16 GGQVQLWQFLLELLGEPSNGGVIVWEGSQGEFRLVDPDEVARRWGLRKSKPNMNYDKLSR 75
             + LWQFLL+LL +P N  +I W  + G+F+L+  +EVAR WG+RK+KPNMNYDKLSR
Sbjct: 2  DSAITLWQFLLQLLQKPQNKHMICWTSNDGQFKLLQAEEVARLWGIRKNKPNMNYDKLSR 61

Query: 76 ALRYYYDKNIMTKVHGKRYAYRF 98
          ALRYYY KNI+ KV+G+++ Y+F
Sbjct: 62 ALRYYYVKNIIKKVNGQKFVYKF 84

>2nny_A C-ETS-1 protein, P54; protein-DNA complex, transcription/DNA complex; 2.58A {Homo sapiens} PDB: 3ri4_A 3mfk_A 1mdm_B Length = 171

 Score =  124 bits (312), Expect = 1e-37
 Identities = 57/96 (59%), Positives = 66/96 (68%)

Query: 3   ELACAVSRGLSGSGGQVQLWQFLLELLGEPSNGGVIVWEGSQGEFRLVDPDEVARRWGLR 62
            +  A +       G +QLWQFLLELL + S+   I W G   EF+L DPDEVARRWG R
Sbjct: 49  PVIPAAALAGYTGSGPIQLWQFLLELLTDKSSQSFISWTGDGWEFKLSDPDEVARRWGKR 108

Query: 63  KSKPNMNYDKLSRALRYYYDKNIMTKVHGKRYAYRF 98
           K+KP MNY+KLSR LRYYYDKNI+ K  GKRY YRF
Sbjct: 109 KNKPKMNYEKLSRGLRYYYDKNIIHKTAGKRYVYRF 144

>2dao_A Transcription factor ETV6; ETS domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 118

 Score =  122 bits (306), Expect = 2e-37
 Identities = 40/89 (44%), Positives = 55/89 (61%), Gaps = 1/89 (1%)

Query: 11 GLSGSGGQVQLWQFLLELLGEPSNGGVIVWEG-SQGEFRLVDPDEVARRWGLRKSKPNMN 69
          G SGS G   LW ++ +LL +      I WE      FR+VDP+ +AR WG  K++ NM 
Sbjct: 1  GSSGSSGCRLLWDYVYQLLSDSRYENFIRWEDKESKIFRIVDPNGLARLWGNHKNRTNMT 60

Query: 70 YDKLSRALRYYYDKNIMTKVHGKRYAYRF 98
          Y+K+SRALR+YY  NI+ K  G+R  +RF
Sbjct: 61 YEKMSRALRHYYKLNIIRKEPGQRLLFRF 89

>1gvj_A C-ETS-1 protein, P54; transcription, autoinhibition, ETS domain; 1.53A {Homo sapiens} SCOP: a.4.5.21 PDB: 1md0_A 1r36_A 1k78_B 1k79_A* 1k7a_A* 2stt_A* 2stw_A* Length = 146

 Score =  121 bits (304), Expect = 1e-36
 Identities = 60/100 (60%), Positives = 68/100 (68%), Gaps = 2/100 (2%)

Query: 7   AVSRGLSGSGGQVQLWQFLLELLGEPSNGGVIVWEGSQGEFRLVDPDEVARRWGLRKSKP 66
           A +       G +QLWQFLLELL + S    I W G   EF+L DPDEVARRWG RK+KP
Sbjct: 28  AAALAGYTGSGPIQLWQFLLELLTDKSCQSFISWTGDGWEFKLSDPDEVARRWGKRKNKP 87

Query: 67  NMNYDKLSRALRYYYDKNIMTKVHGKRYAYRF--DFQGLM 104
            MNY+KLSR LRYYYDKNI+ K  GKRY YRF  D Q L+
Sbjct: 88  KMNYEKLSRGLRYYYDKNIIHKTAGKRYVYRFVCDLQSLL 127

>2lf8_A Transcription factor ETV6; auto-inhibition; NMR {Mus musculus} Length = 128

 Score =  120 bits (302), Expect = 2e-36
 Identities = 35/84 (41%), Positives = 50/84 (59%), Gaps = 1/84 (1%)

Query: 16 GGQVQLWQFLLELLGEPSNGGVIVWEG-SQGEFRLVDPDEVARRWGLRKSKPNMNYDKLS 74
               LW ++ +LL +      I WE      FR+VDP+ +AR WG  K++ NM Y+K+S
Sbjct: 2  SHMRLLWDYVYQLLSDSRYENFIRWEDKESKIFRIVDPNGLARLWGNHKNRTNMTYEKMS 61

Query: 75 RALRYYYDKNIMTKVHGKRYAYRF 98
          RALR+YY  NI+ K  G+R  +RF
Sbjct: 62 RALRHYYKLNIIRKEPGQRLLFRF 85

>1wwx_A E74-like factor 5 ESE-2B; DNA binding, transcriptional activation and repression, structural genomics; NMR {Homo sapiens} SCOP: a.4.5.21 Length = 107

 Score =  116 bits (291), Expect = 4e-35
 Identities = 42/107 (39%), Positives = 58/107 (54%), Gaps = 3/107 (2%)

Query: 11  GLSGSGGQVQLWQFLLELLGEPS-NGGVIVWEG-SQGEFRLVDPDEVARRWGLRKSKPNM 68
           G SGS G   LW+F+ +LL  P  N G++ WE   QG FR+V  + +A+ WG RK    M
Sbjct: 1   GSSGSSGSSHLWEFVRDLLLSPEENCGILEWEDREQGIFRVVKSEALAKMWGQRKKNDRM 60

Query: 69  NYDKLSRALRYYYDKNIMTKVHGKRYAYRFDFQGLMLACQASNTSDA 115
            Y+KLSRALRYYY   I+ +V  +R  Y+F            +   +
Sbjct: 61  TYEKLSRALRYYYKTGILERV-DRRLVYKFGKNAHGWQEDKLSGPSS 106

>4avp_A ETS translocation variant 1; transcription, transcriptional activation and repression, DN binding protein, E twenty-SIX, erwing sarcoma; 1.82A {Homo sapiens} Length = 106

 Score =  114 bits (287), Expect = 2e-34
 Identities = 52/86 (60%), Positives = 67/86 (77%)

Query: 13 SGSGGQVQLWQFLLELLGEPSNGGVIVWEGSQGEFRLVDPDEVARRWGLRKSKPNMNYDK 72
          S   G +QLWQFL+ LL +PSN   I W G   EF+L++P+EVARRWG++K++P MNYDK
Sbjct: 6  SQRRGSLQLWQFLVALLDDPSNSHFIAWTGRGMEFKLIEPEEVARRWGIQKNRPAMNYDK 65

Query: 73 LSRALRYYYDKNIMTKVHGKRYAYRF 98
          LSR+LRYYY+K IM KV G+RY Y+F
Sbjct: 66 LSRSLRYYYEKGIMQKVAGERYVYKF 91

>3jtg_A ETS-related transcription factor ELF-3; ELF3, protein-DNA complex, type II TGF-beta receptor, activa alternative splicing, cytoplasm; HET: DNA; 2.20A {Mus musculus} Length = 103

 Score =  114 bits (286), Expect = 2e-34
 Identities = 34/86 (39%), Positives = 54/86 (62%), Gaps = 2/86 (2%)

Query: 15 SGGQVQLWQFLLELLGEP-SNGGVIVWEG-SQGEFRLVDPDEVARRWGLRKSKPNMNYDK 72
          +     LW+F+ ++L  P  N G++ WE   +G F+ +  + VA+ WG +K   NM Y+K
Sbjct: 1  APRGTHLWEFIRDILIHPELNEGLMKWENRHEGVFKFLRSEAVAQLWGQKKKNSNMTYEK 60

Query: 73 LSRALRYYYDKNIMTKVHGKRYAYRF 98
          LSRA+RYYY + I+ +V G+R  Y+F
Sbjct: 61 LSRAMRYYYKREILERVDGRRLVYKF 86

>1awc_A Protein (GA binding protein alpha); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: a.4.5.21 Length = 110

 Score =  113 bits (284), Expect = 5e-34
 Identities = 47/80 (58%), Positives = 61/80 (76%)

Query: 19 VQLWQFLLELLGEPSNGGVIVWEGSQGEFRLVDPDEVARRWGLRKSKPNMNYDKLSRALR 78
          +QLWQFLLELL +      I W G +GEF+L  P+ VA++WG RK+KP MNY+KLSRALR
Sbjct: 1  IQLWQFLLELLTDKDARDCISWVGDEGEFKLNQPELVAQKWGQRKNKPTMNYEKLSRALR 60

Query: 79 YYYDKNIMTKVHGKRYAYRF 98
          YYYD +++ KV GKR+ Y+F
Sbjct: 61 YYYDGDMICKVQGKRFVYKF 80

>1yo5_C SAM pointed domain containing ETS transcription factor; protein-DNA complex, double helix, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.4.5.21 Length = 97

 Score =  112 bits (281), Expect = 8e-34
 Identities = 41/89 (46%), Positives = 56/89 (62%), Gaps = 3/89 (3%)

Query: 13 SGSGGQVQLWQFLLELLGEP-SNGGVIVWE-GSQGEFRLVDPDEVARRWGLRKSKPNMNY 70
          +     + LWQFL ELL +P S G  I W    +G F++ D  +VAR WG+RK++P MNY
Sbjct: 5  ALGSQPIHLWQFLKELLLKPHSYGRFIRWLNKEKGIFKIEDSAQVARLWGIRKNRPAMNY 64

Query: 71 DKLSRALRYYYDKNIMTKVH-GKRYAYRF 98
          DKLSR++R YY K I+ K    +R  Y+F
Sbjct: 65 DKLSRSIRQYYKKGIIRKPDISQRLVYQF 93

>1pue_E Protein (transcription factor PU.1 (TF PU.1)); complex (transcription regulating/DNA), oncogene, transforming protein, DNA- binding, activator; HET: DNA; 2.10A {Mus musculus} SCOP: a.4.5.21 Length = 89

 Score =  103 bits (258), Expect = 2e-30
 Identities = 29/90 (32%), Positives = 47/90 (52%), Gaps = 5/90 (5%)

Query: 18  QVQLWQFLLELLGEPSNGGVIVWEGSQ---GEFRLVDPDEVARRWGLRKS-KPNMNYDKL 73
           +++L+QFLL+LL        I W        +F     + +A RWG++K  +  M Y+K+
Sbjct: 1   KIRLYQFLLDLLRSGDMKDSIWWVDKDKGTFQFSSKHKEALAHRWGIQKGNRKKMTYEKM 60

Query: 74  SRALRYYYDKNIMTKVHGKRYAYRFDFQGL 103
           +RALR Y     + KV  K+  Y+F  + L
Sbjct: 61  ARALRNYGKTGEVKKVK-KKLTYQFSGEVL 89

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	130
4avp_A	106	ETS translocation variant 1; transcription, transc	100.0
1fli_A	98	FLI-1; transcription/DNA; NMR {Homo sapiens} SCOP:	100.0
2ypr_A	102	Protein FEV; transcription; 2.64A {Homo sapiens} P	100.0
1bc8_C	93	SAP-1, protein (SAP-1 ETS domain); DNA-binding dom	100.0
1yo5_C	97	SAM pointed domain containing ETS transcription fa	100.0
2dao_A	118	Transcription factor ETV6; ETS domain, structural	100.0
1wwx_A	107	E74-like factor 5 ESE-2B; DNA binding, transcripti	100.0
1awc_A	110	Protein (GA binding protein alpha); complex (trans	100.0
1gvj_A	146	C-ETS-1 protein, P54; transcription, autoinhibitio	100.0
1pue_E	89	Protein (transcription factor PU.1 (TF PU.1)); com	100.0
3jtg_A	103	ETS-related transcription factor ELF-3; ELF3, prot	100.0
2nny_A	171	C-ETS-1 protein, P54; protein-DNA complex, transcr	100.0
1hbx_G	157	ETS-domain protein ELK-4; gene regulation, transcr	100.0
2lf8_A	128	Transcription factor ETV6; auto-inhibition; NMR {M	100.0
3hts_B	102	Heat shock transcription factor; transcription reg	97.12
2ldu_A	125	Heat shock factor protein 1; structural genomics,	96.79
1hks_A	106	Heat-shock transcription factor; transcription reg	96.59

>4avp_A ETS translocation variant 1; transcription, transcriptional activation and repression, DN binding protein, E twenty-SIX, erwing sarcoma; 1.82A {Homo sapiens} PDB: 4b06_A

Probab=100.00  E-value=4.9e-46  Score=267.13  Aligned_cols=98  Identities=55%  Similarity=1.064  Sum_probs=89.8

Q ss_pred             CCCCceehHHHHHHhhCCCCCCCCeeEecCCCeEEEeChHHHHHHhhcccCCCCCcHHHHHHHHHHhhhcccEEecCcee
Q psy18222         14 GSGGQVQLWQFLLELLGEPSNGGVIVWEGSQGEFRLVDPDEVARRWGLRKSKPNMNYDKLSRALRYYYDKNIMTKVHGKR   93 (130)
Q Consensus        14 ~~~g~~~LW~FLl~LL~d~~~~~~I~Wt~~~~eFri~d~~~vArlWG~~Knk~~M~YeklsRsLR~yY~kgIl~Kv~g~r   93 (130)
                      .++|+++|||||++||+|+++++||+|||+++||+++||++||+|||.+||+++||||||||||||||++|||+||+|+|
T Consensus         7 ~~~g~i~LwqFL~~LL~d~~~~~~I~W~~~~~~Fkl~dp~~VA~lWG~rKnkp~M~YeKlSRaLRyYY~kgii~Kv~G~r   86 (106)
T 4avp_A            7 QRRGSLQLWQFLVALLDDPSNSHFIAWTGRGMEFKLIEPEEVARRWGIQKNRPAMNYDKLSRSLRYYYEKGIMQKVAGER   86 (106)
T ss_dssp             ----CCCHHHHHHHHHHCGGGTTTEEECSSTTEEEESSHHHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTSEEECTTCS
T ss_pred             CCCCcEeHHHHHHHHHcCccCCCCCcccCCCceEEecCHHHHHHHHHhccCCCCcCHHHHHHHHHHHHhcCeEEecCCCe
Confidence            36789999999999999999999999999889999999999999999999999999999999999999999999999999


Q ss_pred             eEEEe--cccchhhhhccCC
Q psy18222         94 YAYRF--DFQGLMLACQASN  111 (130)
Q Consensus        94 l~Y~F--~~~~~~~~~~~~~  111 (130)
                      +||+|  +++++++|++|||
T Consensus        87 ~vYkF~~~p~~l~~~~~~~~  106 (106)
T 4avp_A           87 YVYKFVCDPEALFSMAFSDN  106 (106)
T ss_dssp             SEEEECCSHHHHHHHHC---
T ss_pred             EEEEecCCHHHHHhccCCCC
Confidence            99999  8899999999997

>1fli_A FLI-1; transcription/DNA; NMR {Homo sapiens} SCOP: a.4.5.21

Probab=100.00  E-value=2.9e-46  Score=265.00  Aligned_cols=97  Identities=73%  Similarity=1.280  Sum_probs=94.3

Q ss_pred             CCCCceehHHHHHHhhCCCCCCCCeeEecCCCeEEEeChHHHHHHhhcccCCCCCcHHHHHHHHHHhhhcccEEecCcee
Q psy18222         14 GSGGQVQLWQFLLELLGEPSNGGVIVWEGSQGEFRLVDPDEVARRWGLRKSKPNMNYDKLSRALRYYYDKNIMTKVHGKR   93 (130)
Q Consensus        14 ~~~g~~~LW~FLl~LL~d~~~~~~I~Wt~~~~eFri~d~~~vArlWG~~Knk~~M~YeklsRsLR~yY~kgIl~Kv~g~r   93 (130)
                      +++|+++||+||++||.|+++.+||+|||+++||+|+||++||+|||.+|||++||||||||||||||++|||.||+|+|
T Consensus         1 ~gsg~~~LwqFL~~LL~d~~~~~~I~W~~~~g~Fklvd~e~VArlWG~rK~kp~MnYeklSRaLRyYY~k~i~~Kv~gkr   80 (98)
T 1fli_A            1 PGSGQIQLWQFLLELLSDSANASCITWEGTNGEFKMTDPDEVARRWGERKSKPNMNYDKLSRALRYYYDKNIMTKVHGKR   80 (98)
T ss_dssp             CCCSSCCSHHHHHHHHHTCSSCSSEECTTSSSSCEECCHHHHHHHHHHHTCCTTCSSHHHHHHHHHHHHTTSCCCBGGGS
T ss_pred             CCCCceeHHHHHHHHhcCcccCCCeEEeCCCCEEEEcCHHHHHHHHHhccCCCCcCHHHHHHHHHHHHHcCcEeecCCCe
Confidence            57899999999999999999999999999899999999999999999999999999999999999999999999999999


Q ss_pred             eEEEecccchhhhhccC
Q psy18222         94 YAYRFDFQGLMLACQAS  110 (130)
Q Consensus        94 l~Y~F~~~~~~~~~~~~  110 (130)
                      ++|+|+++++..+++|.
T Consensus        81 ~vY~F~~~~~~~~~~~~   97 (98)
T 1fli_A           81 YAYKFDFHGIAQALQPH   97 (98)
T ss_dssp             SBCCCCTTSCSSSCCCC
T ss_pred             EEEEecCccHhhhcCCC
Confidence            99999999999998875

>2ypr_A Protein FEV; transcription; 2.64A {Homo sapiens} PDB: 1fli_A

Probab=100.00  E-value=1.4e-45  Score=263.22  Aligned_cols=99  Identities=77%  Similarity=1.326  Sum_probs=94.1

Q ss_pred             CCCCCceehHHHHHHhhCCCCCCCCeeEecCCCeEEEeChHHHHHHhhcccCCCCCcHHHHHHHHHHhhhcccEEecCce
Q psy18222         13 SGSGGQVQLWQFLLELLGEPSNGGVIVWEGSQGEFRLVDPDEVARRWGLRKSKPNMNYDKLSRALRYYYDKNIMTKVHGK   92 (130)
Q Consensus        13 ~~~~g~~~LW~FLl~LL~d~~~~~~I~Wt~~~~eFri~d~~~vArlWG~~Knk~~M~YeklsRsLR~yY~kgIl~Kv~g~   92 (130)
                      -+++|+++|||||++||+|+++.+||+|++.++||+|+||++||+|||.+|||++||||||||||||||++|||+||+|+
T Consensus         2 ~~g~g~i~LwqFLl~LL~d~~~~~~I~W~~~~g~Fkl~dp~~VArlWG~rKnkp~MnYeKlSRaLRyYY~k~ii~Kv~Gk   81 (102)
T 2ypr_A            2 MKGSGQIQLWQFLLELLADRANAGCIAWEGGHGEFKLTDPDEVARRWGERKSKPNMNYDKLSRALRYYYDKNIMSKVHGK   81 (102)
T ss_dssp             -CCCSSCCHHHHHHHHHTCGGGTTTCEECSSTTEEECSSHHHHHHHHHHHTTCTTCCHHHHHHHHTHHHHTTSEEECSSC
T ss_pred             cCCCCcEeHHHHHHHHhcCCCCCCcccccCCCceEEecChHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCcEEecCCC
Confidence            46889999999999999999999999999989999999999999999999999999999999999999999999999999


Q ss_pred             eeEEEecccchhhhhccCC
Q psy18222         93 RYAYRFDFQGLMLACQASN  111 (130)
Q Consensus        93 rl~Y~F~~~~~~~~~~~~~  111 (130)
                      |+||+|+++.+..+++|..
T Consensus        82 r~vYkF~~~~l~~~~~~~~  100 (102)
T 2ypr_A           82 RYAYRFDFQGLAQACQPPP  100 (102)
T ss_dssp             SSEEEECHHHHHHHHCC--
T ss_pred             eEEEEeCCCcHHHhccCCC
Confidence            9999999999999998865

>1bc8_C SAP-1, protein (SAP-1 ETS domain); DNA-binding domain, winged helix-turn-helix, DNA-binding specificity, transcription/DNA complex; HET: DNA; 1.93A {Homo sapiens} SCOP: a.4.5.21 PDB: 1bc7_C* 1k6o_A 1dux_C*

Probab=100.00  E-value=5e-43  Score=246.38  Aligned_cols=85  Identities=56%  Similarity=1.106  Sum_probs=82.4

Q ss_pred             CCceehHHHHHHhhCCCCCCCCeeEecCCCeEEEeChHHHHHHhhcccCCCCCcHHHHHHHHHHhhhcccEEecCceeeE
Q psy18222         16 GGQVQLWQFLLELLGEPSNGGVIVWEGSQGEFRLVDPDEVARRWGLRKSKPNMNYDKLSRALRYYYDKNIMTKVHGKRYA   95 (130)
Q Consensus        16 ~g~~~LW~FLl~LL~d~~~~~~I~Wt~~~~eFri~d~~~vArlWG~~Knk~~M~YeklsRsLR~yY~kgIl~Kv~g~rl~   95 (130)
                      .|+++||+||++||.|+++++||+|||+++||+++||++||++||.+||+++||||||||||||||++|||+||+|++++
T Consensus         2 ~~~i~Lw~FL~~LL~d~~~~~~I~W~~~~g~Fkl~d~~~VArlWG~rKnk~~MnYeklSRaLRyYY~~~il~Kv~g~r~v   81 (93)
T 1bc8_C            2 DSAITLWQFLLQLLQKPQNKHMICWTSNDGQFKLLQAEEVARLWGIRKNKPNMNYDKLSRALRYYYVKNIIKKVNGQKFV   81 (93)
T ss_dssp             CCCCCHHHHHHHHTTCGGGTTTSEECSSSSEEECTTHHHHHHHHHHHHTCTTCCHHHHHHHHHHHHHHTSEEECTTSTTE
T ss_pred             CCcccHHHHHHHHhcCcccCCceEEeCCCCEEEecCHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHhcCcEEecCCCeEE
Confidence            47899999999999999999999999988999999999999999999999999999999999999999999999999999


Q ss_pred             EEecc
Q psy18222         96 YRFDF  100 (130)
Q Consensus        96 Y~F~~  100 (130)
                      |+|+.
T Consensus        82 Y~F~~   86 (93)
T 1bc8_C           82 YKFVS   86 (93)
T ss_dssp             EEETT
T ss_pred             EEeCC
Confidence            99953

>1yo5_C SAM pointed domain containing ETS transcription factor; protein-DNA complex, double helix, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.4.5.21

Probab=100.00  E-value=2.8e-42  Score=244.16  Aligned_cols=89  Identities=45%  Similarity=0.819  Sum_probs=80.1

Q ss_pred             CcCCCCCceehHHHHHHhhCCCC-CCCCeeEec-CCCeEEEeChHHHHHHhhcccCCCCCcHHHHHHHHHHhhhcccEEe
Q psy18222         11 GLSGSGGQVQLWQFLLELLGEPS-NGGVIVWEG-SQGEFRLVDPDEVARRWGLRKSKPNMNYDKLSRALRYYYDKNIMTK   88 (130)
Q Consensus        11 ~~~~~~g~~~LW~FLl~LL~d~~-~~~~I~Wt~-~~~eFri~d~~~vArlWG~~Knk~~M~YeklsRsLR~yY~kgIl~K   88 (130)
                      ++++++|+++|||||++||.||+ +++||+||+ .++||+|+||++||+|||.+||+++||||||||||||||++|||+|
T Consensus         3 ~~~~~~~~i~LwqFL~eLL~d~~~~~~~I~W~~~~~g~Fkl~d~~~VArlWG~rKnkp~MnYeklSRaLRyYY~~~ii~K   82 (97)
T 1yo5_C            3 LDALGSQPIHLWQFLKELLLKPHSYGRFIRWLNKEKGIFKIEDSAQVARLWGIRKNRPAMNYDKLSRSIRQYYKKGIIRK   82 (97)
T ss_dssp             ------CCCCHHHHHHHHHHCHHHHTTTEEEEETTTTEEEESCHHHHHHHHHHHHTCTTCCHHHHHHHHHHTTTTTSEEC
T ss_pred             cCCCCCCeeEHHHHHHHHhcCcccCCCceEeecCCCCEEEecCHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHhcCcEee
Confidence            35678899999999999999986 699999998 5899999999999999999999999999999999999999999999


Q ss_pred             cC-ceeeEEEec
Q psy18222         89 VH-GKRYAYRFD   99 (130)
Q Consensus        89 v~-g~rl~Y~F~   99 (130)
                      |+ |+|+||+|.
T Consensus        83 v~~g~r~vY~F~   94 (97)
T 1yo5_C           83 PDISQRLVYQFV   94 (97)
T ss_dssp             CSSCCTTEEEES
T ss_pred             ccCCcEEEEecC
Confidence            98 899999995

>2dao_A Transcription factor ETV6; ETS domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=100.00  E-value=1e-41  Score=248.31  Aligned_cols=92  Identities=42%  Similarity=0.757  Sum_probs=85.7

Q ss_pred             cCCCCCceehHHHHHHhhCCCCCCCCeeEecC-CCeEEEeChHHHHHHhhcccCCCCCcHHHHHHHHHHhhhcccEEecC
Q psy18222         12 LSGSGGQVQLWQFLLELLGEPSNGGVIVWEGS-QGEFRLVDPDEVARRWGLRKSKPNMNYDKLSRALRYYYDKNIMTKVH   90 (130)
Q Consensus        12 ~~~~~g~~~LW~FLl~LL~d~~~~~~I~Wt~~-~~eFri~d~~~vArlWG~~Knk~~M~YeklsRsLR~yY~kgIl~Kv~   90 (130)
                      +.+.+|.++||+||++||.|+++.+||+|||+ .++|+|+||++||+|||.+||+++||||||||||||||++|||.||+
T Consensus         2 ~~~~~g~~~LwqFLleLL~d~~~~~~I~W~~~~~g~Fklvdp~~VArlWG~rKnkp~MnYeKLSRaLRyYY~k~ii~Kv~   81 (118)
T 2dao_A            2 SSGSSGCRLLWDYVYQLLSDSRYENFIRWEDKESKIFRIVDPNGLARLWGNHKNRTNMTYEKMSRALRHYYKLNIIRKEP   81 (118)
T ss_dssp             CCCCCCCCCHHHHHHHHHHCGGGTTTEEEEEGGGTEEEESCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHTSEECCS
T ss_pred             CCccCcchHHHHHHHHHhCCcccCCceEeeCCCCCeEEEeCHHHHHHHHHhccCCCCcCHHHHHHHHHHHHhcCCEEecc
Confidence            45677899999999999999999999999995 68999999999999999999999999999999999999999999999


Q ss_pred             ceeeEEEecccch
Q psy18222         91 GKRYAYRFDFQGL  103 (130)
Q Consensus        91 g~rl~Y~F~~~~~  103 (130)
                      |+|++|+|.....
T Consensus        82 G~r~vY~F~~~p~   94 (118)
T 2dao_A           82 GQRLLFRFMKTPD   94 (118)
T ss_dssp             SSSSEEEECSCSG
T ss_pred             CCeEEEEecCCHH
Confidence            9999999964433

>1wwx_A E74-like factor 5 ESE-2B; DNA binding, transcriptional activation and repression, structural genomics; NMR {Homo sapiens} SCOP: a.4.5.21

Probab=100.00  E-value=1.9e-41  Score=243.49  Aligned_cols=90  Identities=46%  Similarity=0.919  Sum_probs=84.0

Q ss_pred             cCCCCCceehHHHHHHhhCCCC-CCCCeeEecC-CCeEEEeChHHHHHHhhcccCCCCCcHHHHHHHHHHhhhcccEEec
Q psy18222         12 LSGSGGQVQLWQFLLELLGEPS-NGGVIVWEGS-QGEFRLVDPDEVARRWGLRKSKPNMNYDKLSRALRYYYDKNIMTKV   89 (130)
Q Consensus        12 ~~~~~g~~~LW~FLl~LL~d~~-~~~~I~Wt~~-~~eFri~d~~~vArlWG~~Knk~~M~YeklsRsLR~yY~kgIl~Kv   89 (130)
                      +++++|+++|||||++||.||+ +.+||+|||+ ++||+|+||++||+|||.+|||++||||||||||||||++|||.||
T Consensus         2 ~sg~~g~i~LwqFL~eLL~d~~~~~~~I~W~~~~~g~Fkl~d~e~VArlWG~rKnkp~MnYeKlSRaLRyYY~~~ii~Kv   81 (107)
T 1wwx_A            2 SSGSSGSSHLWEFVRDLLLSPEENCGILEWEDREQGIFRVVKSEALAKMWGQRKKNDRMTYEKLSRALRYYYKTGILERV   81 (107)
T ss_dssp             CCCCCSSCCHHHHHHHHHHCTTTCCSCCEEEETTTTEEECSCHHHHHHHHHHHHTCTTCCHHHHHHHHHHHHHHTSEECC
T ss_pred             CCCCCCcEEHHHHHHHHHcCcccCCCcEEeecCCCCEEEecCHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHhcCcEEec
Confidence            5789999999999999999986 6799999995 7999999999999999999999999999999999999999999999


Q ss_pred             CceeeEEEecccc
Q psy18222         90 HGKRYAYRFDFQG  102 (130)
Q Consensus        90 ~g~rl~Y~F~~~~  102 (130)
                      + +|+||+|+..+
T Consensus        82 ~-~rlvY~F~~~~   93 (107)
T 1wwx_A           82 D-RRLVYKFGKNA   93 (107)
T ss_dssp             S-SSSEEEECSSC
T ss_pred             c-ceEEEEeCCch
Confidence            5 89999996443

>1awc_A Protein (GA binding protein alpha); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: a.4.5.21

Probab=100.00  E-value=2.3e-41  Score=243.97  Aligned_cols=84  Identities=56%  Similarity=1.080  Sum_probs=80.9

Q ss_pred             eehHHHHHHhhCCCCCCCCeeEecCCCeEEEeChHHHHHHhhcccCCCCCcHHHHHHHHHHhhhcccEEecCceeeEEEe
Q psy18222         19 VQLWQFLLELLGEPSNGGVIVWEGSQGEFRLVDPDEVARRWGLRKSKPNMNYDKLSRALRYYYDKNIMTKVHGKRYAYRF   98 (130)
Q Consensus        19 ~~LW~FLl~LL~d~~~~~~I~Wt~~~~eFri~d~~~vArlWG~~Knk~~M~YeklsRsLR~yY~kgIl~Kv~g~rl~Y~F   98 (130)
                      ++|||||++||.|+++++||+|||++|||+++||++||++||.+||+++||||||||||||||++|||.||+|+|++|+|
T Consensus         1 i~LwqFLleLL~d~~~~~~I~W~~~~geFkl~d~e~VArlWG~rKnkp~MnYeKlSRaLRyYY~k~ii~Kv~GkrlvY~F   80 (110)
T 1awc_A            1 IQLWQFLLELLTDKDARDCISWVGDEGEFKLNQPELVAQKWGQRKNKPTMNYEKLSRALRYYYDGDMICKVQGKRFVYKF   80 (110)
T ss_dssp             CCHHHHHHHHHTCTTTTTTSEECSSSSEEECSSHHHHHHHHHHHHTCTTCCHHHHHHHHHGGGGSSSEEECTTSTTEEEE
T ss_pred             CcHHHHHHHHhcCcccCCceEEeCCCCEEEecCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHhcCCEeeccCCeeEEec
Confidence            58999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccc
Q psy18222         99 DFQG  102 (130)
Q Consensus        99 ~~~~  102 (130)
                      +++.
T Consensus        81 ~~~~   84 (110)
T 1awc_A           81 VCDL   84 (110)
T ss_dssp             CSCH
T ss_pred             CCCH
Confidence            6543

>1gvj_A C-ETS-1 protein, P54; transcription, autoinhibition, ETS domain; 1.53A {Homo sapiens} SCOP: a.4.5.21 PDB: 1md0_A 1r36_A 1k78_B 1k79_A* 1k7a_A* 2stt_A* 2stw_A*

Probab=100.00  E-value=4.1e-41  Score=252.61  Aligned_cols=91  Identities=65%  Similarity=1.140  Sum_probs=86.6

Q ss_pred             CCCceehHHHHHHhhCCCCCCCCeeEecCCCeEEEeChHHHHHHhhcccCCCCCcHHHHHHHHHHhhhcccEEecCceee
Q psy18222         15 SGGQVQLWQFLLELLGEPSNGGVIVWEGSQGEFRLVDPDEVARRWGLRKSKPNMNYDKLSRALRYYYDKNIMTKVHGKRY   94 (130)
Q Consensus        15 ~~g~~~LW~FLl~LL~d~~~~~~I~Wt~~~~eFri~d~~~vArlWG~~Knk~~M~YeklsRsLR~yY~kgIl~Kv~g~rl   94 (130)
                      ++|+++||+||++||.|+++++||+|||+++||+++||++||+|||.+||+++||||||||||||||++|||+||+|+|+
T Consensus        36 ~sg~i~LwqFLleLL~d~~~~~~I~Wt~~~~eFklvdpe~VArlWG~rKnkp~MnYeKLSRaLRyYY~k~ii~Kv~Gkrl  115 (146)
T 1gvj_A           36 GSGPIQLWQFLLELLTDKSCQSFISWTGDGWEFKLSDPDEVARRWGKRKNKPKMNYEKLSRGLRYYYDKNIIHKTAGKRY  115 (146)
T ss_dssp             TCCSCCHHHHHHHHHTCGGGTTTSEECSSTTEEECSSHHHHHHHHHHHHTCTTCCHHHHHHHHHHHHHTTSEEECTTSSS
T ss_pred             CCCceeHHHHHHHHhcCcccCCceEeeCCCCEEEeCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcCcEEecCCCeE
Confidence            77999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEe--cccchhh
Q psy18222         95 AYRF--DFQGLML  105 (130)
Q Consensus        95 ~Y~F--~~~~~~~  105 (130)
                      +|+|  +++++.+
T Consensus       116 vY~F~~~~~~l~g  128 (146)
T 1gvj_A          116 VYRFVCDLQSLLG  128 (146)
T ss_dssp             EEEECSCHHHHHS
T ss_pred             EEEeccchHhhcC
Confidence            9999  5555554

>1pue_E Protein (transcription factor PU.1 (TF PU.1)); complex (transcription regulating/DNA), oncogene, transforming protein, DNA- binding, activator; HET: DNA; 2.10A {Mus musculus} SCOP: a.4.5.21

Probab=100.00  E-value=1.1e-40  Score=232.82  Aligned_cols=85  Identities=35%  Similarity=0.709  Sum_probs=79.3

Q ss_pred             ceehHHHHHHhhCCCCCCCCeeEec-CCCeEEEe--ChHHHHHHhhccc-CCCCCcHHHHHHHHHHhhhcccEEecCcee
Q psy18222         18 QVQLWQFLLELLGEPSNGGVIVWEG-SQGEFRLV--DPDEVARRWGLRK-SKPNMNYDKLSRALRYYYDKNIMTKVHGKR   93 (130)
Q Consensus        18 ~~~LW~FLl~LL~d~~~~~~I~Wt~-~~~eFri~--d~~~vArlWG~~K-nk~~M~YeklsRsLR~yY~kgIl~Kv~g~r   93 (130)
                      +++|||||++||.|+++++||+||| .+|+|+|+  ||++||++||.+| |+|+||||||||||||||++|||.||+ +|
T Consensus         1 ~i~LwqFL~~LL~d~~~~~~I~W~~~~~g~Fk~~~~~~e~VArlWG~rK~Nk~~MnYeKlSRaLRyYY~~~ii~Kv~-~r   79 (89)
T 1pue_E            1 KIRLYQFLLDLLRSGDMKDSIWWVDKDKGTFQFSSKHKEALAHRWGIQKGNRKKMTYEKMARALRNYGKTGEVKKVK-KK   79 (89)
T ss_dssp             CCCHHHHHHHHHHHTCCTTTEEEEETTTTEEEECTTTHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHHSSEEECS-ST
T ss_pred             CccHHHHHHHHhcCcccCCceEeecCCCcEEEEecCChHHHHHHhhcccCCCCCcCHHHHHHHHHHHHHcCceeecc-ce
Confidence            4799999999999999999999999 57999997  7999999999999 789999999999999999999999998 79


Q ss_pred             eEEEecccch
Q psy18222         94 YAYRFDFQGL  103 (130)
Q Consensus        94 l~Y~F~~~~~  103 (130)
                      ++|+|+++.+
T Consensus        80 ~vY~F~~~~~   89 (89)
T 1pue_E           80 LTYQFSGEVL   89 (89)
T ss_dssp             TEEEECTTC-
T ss_pred             EEEeeccccC
Confidence            9999987653

>3jtg_A ETS-related transcription factor ELF-3; ELF3, protein-DNA complex, type II TGF-beta receptor, activa alternative splicing, cytoplasm; HET: DNA; 2.20A {Mus musculus} SCOP: a.4.5.21

Probab=100.00  E-value=3.3e-40  Score=235.78  Aligned_cols=85  Identities=40%  Similarity=0.935  Sum_probs=80.2

Q ss_pred             ceehHHHHHHhhCCCC-CCCCeeEecC-CCeEEEeChHHHHHHhhcccCCCCCcHHHHHHHHHHhhhcccEEecCceeeE
Q psy18222         18 QVQLWQFLLELLGEPS-NGGVIVWEGS-QGEFRLVDPDEVARRWGLRKSKPNMNYDKLSRALRYYYDKNIMTKVHGKRYA   95 (130)
Q Consensus        18 ~~~LW~FLl~LL~d~~-~~~~I~Wt~~-~~eFri~d~~~vArlWG~~Knk~~M~YeklsRsLR~yY~kgIl~Kv~g~rl~   95 (130)
                      .++|||||++||+|++ ++++|+|||+ .++|+|+||++||+|||++|||++||||||||||||||++|||+||+|+++|
T Consensus         4 ~~~LwqFL~~LL~d~~~~~~~I~W~~~~~g~Fkl~dp~~VArlWG~rKnkp~MnYeKlSRaLRyYy~~~ii~Kv~G~r~v   83 (103)
T 3jtg_A            4 GTHLWEFIRDILIHPELNEGLMKWENRHEGVFKFLRSEAVAQLWGQKKKNSNMTYEKLSRAMRYYYKREILERVDGRRLV   83 (103)
T ss_dssp             CCSHHHHHHHHHTCGGGCSSCEEEEETTTTEEEESSHHHHHHHHHHHTTCTTCCHHHHHHHHHHHHHTTSBCCCTTCTTE
T ss_pred             cccHHHHHHHHHcCcccCCCccccccCCCceEEecCHHHHHHHHHhccCCCCcCHHHHHHHHHHHHhcCcEEecCCceEE
Confidence            3599999999999998 7899999995 7999999999999999999999999999999999999999999999999999


Q ss_pred             EEecccc
Q psy18222         96 YRFDFQG  102 (130)
Q Consensus        96 Y~F~~~~  102 (130)
                      |+|....
T Consensus        84 Y~F~~~~   90 (103)
T 3jtg_A           84 YKFGKNS   90 (103)
T ss_dssp             EEBCTTC
T ss_pred             EEeCCCc
Confidence            9997553

>2nny_A C-ETS-1 protein, P54; protein-DNA complex, transcription/DNA complex; 2.58A {Homo sapiens} PDB: 3ri4_A 3mfk_A 1mdm_B

Probab=100.00  E-value=2.1e-40  Score=253.91  Aligned_cols=91  Identities=65%  Similarity=1.150  Sum_probs=86.3

Q ss_pred             CCCceehHHHHHHhhCCCCCCCCeeEecCCCeEEEeChHHHHHHhhcccCCCCCcHHHHHHHHHHhhhcccEEecCceee
Q psy18222         15 SGGQVQLWQFLLELLGEPSNGGVIVWEGSQGEFRLVDPDEVARRWGLRKSKPNMNYDKLSRALRYYYDKNIMTKVHGKRY   94 (130)
Q Consensus        15 ~~g~~~LW~FLl~LL~d~~~~~~I~Wt~~~~eFri~d~~~vArlWG~~Knk~~M~YeklsRsLR~yY~kgIl~Kv~g~rl   94 (130)
                      ++|+++|||||++||.|+++++||+|||+++||+++||++||+|||.+|||++||||||||||||||++|||+||+|+|+
T Consensus        61 ~sg~i~LwqFLleLL~d~~~~~~I~Wt~~~~eFklvdpe~VArlWG~rKnkp~MnYeKLSRaLRyYY~k~ii~Kv~Gkrl  140 (171)
T 2nny_A           61 GSGPIQLWQFLLELLTDKSSQSFISWTGDGWEFKLSDPDEVARRWGKRKNKPKMNYEKLSRGLRYYYDKNIIHKTAGKRY  140 (171)
T ss_dssp             TCSSCCHHHHHHHHHTCTGGGGTCEECSSTTEEECSSHHHHHHHHHHHHTCTTCCHHHHHHHHHGGGTTTSEEECTTSTT
T ss_pred             CCCceeHHHHHHHHhcCcccCCceEeeCCCCEEEeCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcCcEeecCCCeE
Confidence            67999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEe--cccchhh
Q psy18222         95 AYRF--DFQGLML  105 (130)
Q Consensus        95 ~Y~F--~~~~~~~  105 (130)
                      +|+|  +++++.+
T Consensus       141 vY~F~~d~~~l~g  153 (171)
T 2nny_A          141 VYRFVSDLQSLLG  153 (171)
T ss_dssp             EEEECTTHHHHHC
T ss_pred             EEEeCCChHHHcC
Confidence            9999  4455554

>1hbx_G ETS-domain protein ELK-4; gene regulation, transcription complex; 3.15A {Homo sapiens} SCOP: a.4.5.21

Probab=100.00  E-value=2.8e-40  Score=250.05  Aligned_cols=85  Identities=56%  Similarity=1.106  Sum_probs=82.5

Q ss_pred             CCceehHHHHHHhhCCCCCCCCeeEecCCCeEEEeChHHHHHHhhcccCCCCCcHHHHHHHHHHhhhcccEEecCceeeE
Q psy18222         16 GGQVQLWQFLLELLGEPSNGGVIVWEGSQGEFRLVDPDEVARRWGLRKSKPNMNYDKLSRALRYYYDKNIMTKVHGKRYA   95 (130)
Q Consensus        16 ~g~~~LW~FLl~LL~d~~~~~~I~Wt~~~~eFri~d~~~vArlWG~~Knk~~M~YeklsRsLR~yY~kgIl~Kv~g~rl~   95 (130)
                      .|+++||+||++||.|+++++||+|||+++||+++||++||+|||.+||+++||||||||||||||++|||+||+|+|++
T Consensus         3 ~~~i~LWqFLleLL~d~~~~~~I~Wt~~~geFklvdpe~VArLWG~rKnkp~MnYeKLSRALRyYY~k~Ii~KV~Gqrlv   82 (157)
T 1hbx_G            3 DSAITLWQFLLQLLQKPQNKHMICWTSNDGQFKLLQAEEVARLWGIRKNKPNMNYDKLSRALRYYYVKNIIKKVNGQKFV   82 (157)
T ss_dssp             CCCCCHHHHTTTSSSCGGGTTTEEECSSSSCEEETTHHHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTSEEECSSCTTE
T ss_pred             CCcccHHHHHHHHhcCcccCCceEEeCCCCEEEecCcHHHHHHHHhccCCCCcCHHHHHHHHHHHHhcCcEEecCCCeEE
Confidence            58999999999999999999999999988999999999999999999999999999999999999999999999999999


Q ss_pred             EEecc
Q psy18222         96 YRFDF  100 (130)
Q Consensus        96 Y~F~~  100 (130)
                      |+|..
T Consensus        83 YkF~~   87 (157)
T 1hbx_G           83 YKFVS   87 (157)
T ss_dssp             EEESS
T ss_pred             EeeCC
Confidence            99943

>2lf8_A Transcription factor ETV6; auto-inhibition; NMR {Mus musculus}

Probab=100.00  E-value=1.7e-41  Score=249.85  Aligned_cols=93  Identities=39%  Similarity=0.736  Sum_probs=86.9

Q ss_pred             CCCceehHHHHHHhhCCCCCCCCeeEecC-CCeEEEeChHHHHHHhhcccCCCCCcHHHHHHHHHHhhhcccEEecCcee
Q psy18222         15 SGGQVQLWQFLLELLGEPSNGGVIVWEGS-QGEFRLVDPDEVARRWGLRKSKPNMNYDKLSRALRYYYDKNIMTKVHGKR   93 (130)
Q Consensus        15 ~~g~~~LW~FLl~LL~d~~~~~~I~Wt~~-~~eFri~d~~~vArlWG~~Knk~~M~YeklsRsLR~yY~kgIl~Kv~g~r   93 (130)
                      ++|.++||+||++||.|+++.+||+|||+ .++|+|+||++||+|||.+|||++||||||||||||||++|||.||+|+|
T Consensus         1 ~s~~~~LWqFLleLL~d~~~~~~I~Wt~k~~geFklvdpe~VArlWG~rKnkp~MnYeKLSRALRyYY~k~Ii~Kv~Gqr   80 (128)
T 2lf8_A            1 GSHMRLLWDYVYQLLSDSRYENFIRWEDKESKIFRIVDPNGLARLWGNHKNRTNMTYEKMSRALRHYYKLNIIRKEPGQR   80 (128)
Confidence            46889999999999999999999999995 68999999999999999999999999999999999999999999999999


Q ss_pred             eEEEe--cccchhhhh
Q psy18222         94 YAYRF--DFQGLMLAC  107 (130)
Q Consensus        94 l~Y~F--~~~~~~~~~  107 (130)
                      ++|+|  .++.++++.
T Consensus        81 lvY~F~~~p~~l~~~~   96 (128)
T 2lf8_A           81 LLFRFMKTPDEIMSGR   96 (128)
Confidence            99999  466666554

>3hts_B Heat shock transcription factor; transcription regulation, DNA-binding protein, complex (WING helix_TURN_ helix-DNA); 1.75A {Kluyveromyces lactis} SCOP: a.4.5.22 PDB: 2hts_A 1fyk_A* 1fym_A 1fyl_A 3hsf_A 1fbu_A 1fbs_A 1fbq_A

Probab=97.12  E-value=0.001  Score=46.74  Aligned_cols=71  Identities=20%  Similarity=0.256  Sum_probs=50.8

Q ss_pred             CcCcCCCCCceehHHHHHHhhCCCCCCCCeeEecCCCeEEEeChHHHHHHhhcccCCCCCcHHHHHHHHHHh
Q psy18222          9 SRGLSGSGGQVQLWQFLLELLGEPSNGGVIVWEGSQGEFRLVDPDEVARRWGLRKSKPNMNYDKLSRALRYY   80 (130)
Q Consensus         9 ~r~~~~~~g~~~LW~FLl~LL~d~~~~~~I~Wt~~~~eFri~d~~~vArlWG~~Knk~~M~YeklsRsLR~y   80 (130)
                      .|.+.+......+-.=|.++|+|++..++|+|...+..|.|.|++++++.==. +--..-+|.++-|-|-.|
T Consensus         3 ~~~s~~~~~~p~F~~KL~~ml~d~~~~~iI~W~~~G~sfiI~d~~~F~~~VLp-~yFkh~nfsSFvRQLN~Y   73 (102)
T 3hts_B            3 RRASVGSMARPAFVNKLWSMVNDKSNEKFIHWSTSGESIVVPNRERFVQEVLP-KYFKHSNFASFVRQLNMY   73 (102)
T ss_dssp             -------CCSCHHHHHHHHHHHCGGGTTTSEECTTSCSEEESCHHHHHHHTHH-HHCSSCCHHHHHHHHHHT
T ss_pred             cccCCCCCCCCcHHHHHHHHhcCCCCCCEEEEeCCCCEEEEcCHHHHHHHHHH-HhcCCCcHHHHHHHhhcC
Confidence            34555666666677777889999999999999999999999999888753111 123467899999999887

>2ldu_A Heat shock factor protein 1; structural genomics, northeast structural genomics consortiu DNA-binding, PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=96.79  E-value=0.002  Score=46.42  Aligned_cols=61  Identities=21%  Similarity=0.369  Sum_probs=47.4

Q ss_pred             ceehHHHHHHhhCCCCCCCCeeEecCCCeEEEeChHHHHHH-hhcccCCCCCcHHHHHHHHHHh
Q psy18222         18 QVQLWQFLLELLGEPSNGGVIVWEGSQGEFRLVDPDEVARR-WGLRKSKPNMNYDKLSRALRYY   80 (130)
Q Consensus        18 ~~~LW~FLl~LL~d~~~~~~I~Wt~~~~eFri~d~~~vArl-WG~~Knk~~M~YeklsRsLR~y   80 (130)
                      ...+-.=|.++|+|++..++|+|...+..|.|.|++++++- =-.  --..-+|.++-|-|-.|
T Consensus        17 ~~~F~~KL~~ml~d~~~~~iI~W~~~G~sFvV~d~~~F~~~vLp~--yFkh~nfsSFvRQLN~Y   78 (125)
T 2ldu_A           17 VPAFLTKLWTLVSDPDTDALICWSPSGNSFHVFDQGQFAKEVLPK--YFKHNNMASFVRQLNMY   78 (125)
T ss_dssp             CCHHHHHHHHHHHCTTTTTTEEECTTSSEEEECCHHHHHHHHHHH--HSSCCCHHHHHHHHHHT
T ss_pred             CCcHHHHHHHHhhCCCCCCEEEEcCCCCEEEEeCHHHHHHHHhHH--hcCCCcHHHHHHHhccc
Confidence            33455556678999999999999999999999999988752 221  12446899999999887

>1hks_A Heat-shock transcription factor; transcription regulation; NMR {Drosophila melanogaster} SCOP: a.4.5.22 PDB: 1hkt_A

Probab=96.59  E-value=0.0021  Score=44.86  Aligned_cols=61  Identities=16%  Similarity=0.259  Sum_probs=46.7

Q ss_pred             ehHHHHHHhhCCCCCCCCeeEecCCCeEEEeChHHHHHHhhcccCCCCCcHHHHHHHHHHhh
Q psy18222         20 QLWQFLLELLGEPSNGGVIVWEGSQGEFRLVDPDEVARRWGLRKSKPNMNYDKLSRALRYYY   81 (130)
Q Consensus        20 ~LW~FLl~LL~d~~~~~~I~Wt~~~~eFri~d~~~vArlWG~~Knk~~M~YeklsRsLR~yY   81 (130)
                      .+-.=|.++|+|++..++|+|...+..|.|.|++++++-==. +--..-+|.++-|-|-.|=
T Consensus         6 ~F~~KL~~mv~d~~~~~iI~W~~~G~sFvI~d~~~F~~~vLp-~yFkh~n~~SFvRQLN~YG   66 (106)
T 1hks_A            6 AFLAKLWRLVDDADTNRLICWTKDGQSFVIQNQAQFAKELLP-LNYKHNNMASFIRQLNMYG   66 (106)
T ss_dssp             TTHHHHHHHHSSSTTTTTSEESTTTSCEECSCCSTTTTTTST-TTTSCCCHHHHHHHHHHHC
T ss_pred             cHHHHHHHHhcCCCCCCEEEEeCCCCEEEECCHHHHHHHHhH-HhcCCCcHHHHHHhhhcCC
Confidence            344456688999999999999999999999999877653111 1235569999999998883

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	130
d1flia_	98	a.4.5.21 (A:) Fli-1 {Human (Homo sapiens) [TaxId:	1e-47
d1gvja_	142	a.4.5.21 (A:) ETS-1 transcription factor, residues	1e-43
d1hbxg_	155	a.4.5.21 (G:) Serum response factor accessory prot	1e-42
d1awca_	110	a.4.5.21 (A:) GA binding protein (GABP) alpha {Mou	2e-41
d1duxc_	86	a.4.5.21 (C:) Elk-1 {Human (Homo sapiens) [TaxId:	7e-41
d1yo5c1	88	a.4.5.21 (C:247-334) Sam pointed domain containing	9e-37
d1wwxa1	94	a.4.5.21 (A:8-101) E74-like factor 5 ese-2b {Human	2e-36
d1puee_	88	a.4.5.21 (E:) Transcription factor PU.1, residues	2e-35

>d1flia_ a.4.5.21 (A:) Fli-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 98

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: ets domain
domain: Fli-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  146 bits (370), Expect = 1e-47
 Identities = 71/92 (77%), Positives = 79/92 (85%)

Query: 17  GQVQLWQFLLELLGEPSNGGVIVWEGSQGEFRLVDPDEVARRWGLRKSKPNMNYDKLSRA 76
           GQ+QLWQFLLELL + +N   I WEG+ GEF++ DPDEVARRWG RKSKPNMNYDKLSRA
Sbjct: 4   GQIQLWQFLLELLSDSANASCITWEGTNGEFKMTDPDEVARRWGERKSKPNMNYDKLSRA 63

Query: 77  LRYYYDKNIMTKVHGKRYAYRFDFQGLMLACQ 108
           LRYYYDKNIMTKVHGKRYAY+FDF G+  A Q
Sbjct: 64  LRYYYDKNIMTKVHGKRYAYKFDFHGIAQALQ 95

>d1gvja_ a.4.5.21 (A:) ETS-1 transcription factor, residues 331-440 {Human (Homo sapiens) [TaxId: 9606]} Length = 142

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: ets domain
domain: ETS-1 transcription factor, residues 331-440
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  138 bits (348), Expect = 1e-43
 Identities = 60/100 (60%), Positives = 68/100 (68%), Gaps = 2/100 (2%)

Query: 7   AVSRGLSGSGGQVQLWQFLLELLGEPSNGGVIVWEGSQGEFRLVDPDEVARRWGLRKSKP 66
           A +       G +QLWQFLLELL + S    I W G   EF+L DPDEVARRWG RK+KP
Sbjct: 28  AAALAGYTGSGPIQLWQFLLELLTDKSCQSFISWTGDGWEFKLSDPDEVARRWGKRKNKP 87

Query: 67  NMNYDKLSRALRYYYDKNIMTKVHGKRYAYRF--DFQGLM 104
            MNY+KLSR LRYYYDKNI+ K  GKRY YRF  D Q L+
Sbjct: 88  KMNYEKLSRGLRYYYDKNIIHKTAGKRYVYRFVCDLQSLL 127

>d1hbxg_ a.4.5.21 (G:) Serum response factor accessory protein 1a, SAP-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 155

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: ets domain
domain: Serum response factor accessory protein 1a, SAP-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  135 bits (342), Expect = 1e-42
 Identities = 50/105 (47%), Positives = 70/105 (66%)

Query: 18  QVQLWQFLLELLGEPSNGGVIVWEGSQGEFRLVDPDEVARRWGLRKSKPNMNYDKLSRAL 77
            + LWQFLL+LL +P N  +I W  + G+F+L+  +EVAR WG+RK+KPNMNYDKLSRAL
Sbjct: 3   AITLWQFLLQLLQKPQNKHMICWTSNDGQFKLLQAEEVARLWGIRKNKPNMNYDKLSRAL 62

Query: 78  RYYYDKNIMTKVHGKRYAYRFDFQGLMLACQASNTSDAYKLHQTL 122
           RYYY KNI+ KV+G+++ Y+F     +L              ++L
Sbjct: 63  RYYYVKNIIKKVNGQKFVYKFVSYPEILNMDPMTVGRIEGDCESL 107

>d1awca_ a.4.5.21 (A:) GA binding protein (GABP) alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 110

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: ets domain
domain: GA binding protein (GABP) alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  131 bits (330), Expect = 2e-41
 Identities = 47/80 (58%), Positives = 61/80 (76%)

Query: 19 VQLWQFLLELLGEPSNGGVIVWEGSQGEFRLVDPDEVARRWGLRKSKPNMNYDKLSRALR 78
          +QLWQFLLELL +      I W G +GEF+L  P+ VA++WG RK+KP MNY+KLSRALR
Sbjct: 1  IQLWQFLLELLTDKDARDCISWVGDEGEFKLNQPELVAQKWGQRKNKPTMNYEKLSRALR 60

Query: 79 YYYDKNIMTKVHGKRYAYRF 98
          YYYD +++ KV GKR+ Y+F
Sbjct: 61 YYYDGDMICKVQGKRFVYKF 80

>d1duxc_ a.4.5.21 (C:) Elk-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 86

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: ets domain
domain: Elk-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  128 bits (324), Expect = 7e-41
 Identities = 54/81 (66%), Positives = 64/81 (79%), Gaps = 1/81 (1%)

Query: 19 VQLWQFLLELLGEPSNGGVIVWEG-SQGEFRLVDPDEVARRWGLRKSKPNMNYDKLSRAL 77
          V LWQFLL+LL E  NG +I W     GEF+LVD +EVAR WGLRK+K NMNYDKLSRAL
Sbjct: 1  VTLWQFLLQLLREQGNGHIISWTSRDGGEFKLVDAEEVARLWGLRKNKTNMNYDKLSRAL 60

Query: 78 RYYYDKNIMTKVHGKRYAYRF 98
          RYYYDKNI+ KV G+++ Y+F
Sbjct: 61 RYYYDKNIIRKVSGQKFVYKF 81

>d1yo5c1 a.4.5.21 (C:247-334) Sam pointed domain containing ets transcription SPDEF {Human (Homo sapiens) [TaxId: 9606]} Length = 88

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: ets domain
domain: Sam pointed domain containing ets transcription SPDEF
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  118 bits (298), Expect = 9e-37
 Identities = 41/83 (49%), Positives = 55/83 (66%), Gaps = 3/83 (3%)

Query: 19 VQLWQFLLELLGEP-SNGGVIVWEG-SQGEFRLVDPDEVARRWGLRKSKPNMNYDKLSRA 76
          + LWQFL ELL +P S G  I W    +G F++ D  +VAR WG+RK++P MNYDKLSR+
Sbjct: 3  IHLWQFLKELLLKPHSYGRFIRWLNKEKGIFKIEDSAQVARLWGIRKNRPAMNYDKLSRS 62

Query: 77 LRYYYDKNIMTKVH-GKRYAYRF 98
          +R YY K I+ K    +R  Y+F
Sbjct: 63 IRQYYKKGIIRKPDISQRLVYQF 85

>d1wwxa1 a.4.5.21 (A:8-101) E74-like factor 5 ese-2b {Human (Homo sapiens) [TaxId: 9606]} Length = 94

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: ets domain
domain: E74-like factor 5 ese-2b
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  117 bits (296), Expect = 2e-36
 Identities = 37/81 (45%), Positives = 51/81 (62%), Gaps = 3/81 (3%)

Query: 20 QLWQFLLELLGEP-SNGGVIVWEG-SQGEFRLVDPDEVARRWGLRKSKPNMNYDKLSRAL 77
           LW+F+ +LL  P  N G++ WE   QG FR+V  + +A+ WG RK    M Y+KLSRAL
Sbjct: 3  HLWEFVRDLLLSPEENCGILEWEDREQGIFRVVKSEALAKMWGQRKKNDRMTYEKLSRAL 62

Query: 78 RYYYDKNIMTKVHGKRYAYRF 98
          RYYY   I+ +V  +R  Y+F
Sbjct: 63 RYYYKTGILERV-DRRLVYKF 82

>d1puee_ a.4.5.21 (E:) Transcription factor PU.1, residues 171-259 {Mouse (Mus musculus) [TaxId: 10090]} Length = 88

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: ets domain
domain: Transcription factor PU.1, residues 171-259
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  115 bits (290), Expect = 2e-35
 Identities = 29/86 (33%), Positives = 48/86 (55%), Gaps = 5/86 (5%)

Query: 18 QVQLWQFLLELLGEPSNGGVIVWEG-SQGEFRLVD--PDEVARRWGLRK-SKPNMNYDKL 73
          +++L+QFLL+LL        I W    +G F+      + +A RWG++K ++  M Y+K+
Sbjct: 1  KIRLYQFLLDLLRSGDMKDSIWWVDKDKGTFQFSSKHKEALAHRWGIQKGNRKKMTYEKM 60

Query: 74 SRALRYYYDKNIMTKVHGKRYAYRFD 99
          +RALR Y     + KV  K+  Y+F 
Sbjct: 61 ARALRNYGKTGEVKKVK-KKLTYQFS 85

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	130
d1flia_	98	Fli-1 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1duxc_	86	Elk-1 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1awca_	110	GA binding protein (GABP) alpha {Mouse (Mus muscul	100.0
d1gvja_	142	ETS-1 transcription factor, residues 331-440 {Huma	100.0
d1yo5c1	88	Sam pointed domain containing ets transcription SP	100.0
d1hbxg_	155	Serum response factor accessory protein 1a, SAP-1	100.0
d1puee_	88	Transcription factor PU.1, residues 171-259 {Mouse	100.0
d1wwxa1	94	E74-like factor 5 ese-2b {Human (Homo sapiens) [Ta	100.0
d2htsa_	92	Heat-shock transcription factor {Milk yeast (Kluyv	97.23
d1hksa_	106	Heat-shock transcription factor {Drosophila melano	97.01
d2irfg_	109	Interferon regulatory factor-2, IRF-2 {Mouse (Mus	92.09
d2pi0a1	106	Interferon regulatory factor 3, IRF-3 {Human (Homo	80.57

>d1flia_ a.4.5.21 (A:) Fli-1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: ets domain
domain: Fli-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3e-46  Score=263.18  Aligned_cols=98  Identities=72%  Similarity=1.264  Sum_probs=93.8

Q ss_pred             CCCCceehHHHHHHhhCCCCCCCCeeEecCCCeEEEeChHHHHHHhhcccCCCCCcHHHHHHHHHHhhhcccEEecCcee
Q psy18222         14 GSGGQVQLWQFLLELLGEPSNGGVIVWEGSQGEFRLVDPDEVARRWGLRKSKPNMNYDKLSRALRYYYDKNIMTKVHGKR   93 (130)
Q Consensus        14 ~~~g~~~LW~FLl~LL~d~~~~~~I~Wt~~~~eFri~d~~~vArlWG~~Knk~~M~YeklsRsLR~yY~kgIl~Kv~g~r   93 (130)
                      +++|+++||+||++||.|+++.++|+|+++++||+|+|+++||+|||.+|||++||||||||||||||++|||+||+|++
T Consensus         1 pg~g~~~Lw~FL~~LL~d~~~~~~I~W~~~~geFkl~~~~~VA~lWG~~Knk~~M~YeklSRaLRyYY~~~il~Kv~gkr   80 (98)
T d1flia_           1 PGSGQIQLWQFLLELLSDSANASCITWEGTNGEFKMTDPDEVARRWGERKSKPNMNYDKLSRALRYYYDKNIMTKVHGKR   80 (98)
T ss_dssp             CCCSSCCSHHHHHHHHHTCSSCSSEECTTSSSSCEECCHHHHHHHHHHHTCCTTCSSHHHHHHHHHHHHTTSCCCBGGGS
T ss_pred             CCCCcccHHHHHHHHhcCcccCCceEEECCCCEEEeCCHHHHHHHHHHhhcCCCccHHHHHHHHHHHHhccceeeccCce
Confidence            57899999999999999999999999999899999999999999999999999999999999999999999999999999


Q ss_pred             eEEEecccchhhhhccCC
Q psy18222         94 YAYRFDFQGLMLACQASN  111 (130)
Q Consensus        94 l~Y~F~~~~~~~~~~~~~  111 (130)
                      ++|+|+.+++...++|.+
T Consensus        81 l~Y~F~~~~~~~~~~p~p   98 (98)
T d1flia_          81 YAYKFDFHGIAQALQPHP   98 (98)
T ss_dssp             SBCCCCTTSCSSSCCCCC
T ss_pred             EEEecCCcccccccCCCC
Confidence            999999999988877653

>d1duxc_ a.4.5.21 (C:) Elk-1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: ets domain
domain: Elk-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.1e-43  Score=241.24  Aligned_cols=82  Identities=66%  Similarity=1.177  Sum_probs=79.3

Q ss_pred             eehHHHHHHhhCCCCCCCCeeEec-CCCeEEEeChHHHHHHhhcccCCCCCcHHHHHHHHHHhhhcccEEecCceeeEEE
Q psy18222         19 VQLWQFLLELLGEPSNGGVIVWEG-SQGEFRLVDPDEVARRWGLRKSKPNMNYDKLSRALRYYYDKNIMTKVHGKRYAYR   97 (130)
Q Consensus        19 ~~LW~FLl~LL~d~~~~~~I~Wt~-~~~eFri~d~~~vArlWG~~Knk~~M~YeklsRsLR~yY~kgIl~Kv~g~rl~Y~   97 (130)
                      ++|||||++||.|++++++|+||| ++|+|+|+||++||+|||.+||+++||||||||||||||++|||+||+|+|++|+
T Consensus         1 i~LwqFL~~LL~d~~~~~~I~Wt~k~~g~Fklv~~~~VA~lWG~~Knk~~MnYeklSRaLRyyY~~~il~Kv~g~rl~Y~   80 (86)
T d1duxc_           1 VTLWQFLLQLLREQGNGHIISWTSRDGGEFKLVDAEEVARLWGLRKNKTNMNYDKLSRALRYYYDKNIIRKVSGQKFVYK   80 (86)
T ss_dssp             CCHHHHHHHHHHHCSSSSSCEEEETTTTEEECTTHHHHHHHHHHTTTCSCCCHHHHHHHHHHHHTTTSEEECTTSTTEEE
T ss_pred             CcHHHHHHHHhcCCCCCCceEeccCCCCEEEecCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcccEeeccCcEEEEE
Confidence            589999999999999999999999 5899999999999999999999999999999999999999999999999999999


Q ss_pred             ecc
Q psy18222         98 FDF  100 (130)
Q Consensus        98 F~~  100 (130)
                      |..
T Consensus        81 F~~   83 (86)
T d1duxc_          81 FVS   83 (86)
T ss_dssp             ESS
T ss_pred             ecC
Confidence            953

>d1awca_ a.4.5.21 (A:) GA binding protein (GABP) alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: ets domain
domain: GA binding protein (GABP) alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=7.6e-43  Score=249.94  Aligned_cols=84  Identities=56%  Similarity=1.080  Sum_probs=80.5

Q ss_pred             eehHHHHHHhhCCCCCCCCeeEecCCCeEEEeChHHHHHHhhcccCCCCCcHHHHHHHHHHhhhcccEEecCceeeEEEe
Q psy18222         19 VQLWQFLLELLGEPSNGGVIVWEGSQGEFRLVDPDEVARRWGLRKSKPNMNYDKLSRALRYYYDKNIMTKVHGKRYAYRF   98 (130)
Q Consensus        19 ~~LW~FLl~LL~d~~~~~~I~Wt~~~~eFri~d~~~vArlWG~~Knk~~M~YeklsRsLR~yY~kgIl~Kv~g~rl~Y~F   98 (130)
                      ++||+||++||.|++++++|+|||++|+|+|+||++||++||.+||+++||||||||||||||++|||+||+|+|++|+|
T Consensus         1 i~Lw~FL~~LL~d~~~~~~I~Wt~~~geFkl~d~e~VA~lWG~~Knk~~M~YeklSRaLRyYY~~~il~Kv~g~rl~Y~F   80 (110)
T d1awca_           1 IQLWQFLLELLTDKDARDCISWVGDEGEFKLNQPELVAQKWGQRKNKPTMNYEKLSRALRYYYDGDMICKVQGKRFVYKF   80 (110)
T ss_dssp             CCHHHHHHHHHTCTTTTTTSEECSSSSEEECSSHHHHHHHHHHHHTCTTCCHHHHHHHHHGGGGSSSEEECTTSTTEEEE
T ss_pred             CcHHHHHHHHHcCcccCCCcEEECCCCEEEeCCHHHHHHHHHHhhCCCcccHHHHHHHHHHHHhcccEEecCCcEEEEec
Confidence            58999999999999999999999988999999999999999999999999999999999999999999999999999999


Q ss_pred             cccc
Q psy18222         99 DFQG  102 (130)
Q Consensus        99 ~~~~  102 (130)
                      ..+.
T Consensus        81 ~~d~   84 (110)
T d1awca_          81 VCDL   84 (110)
T ss_dssp             CSCH
T ss_pred             cCCH
Confidence            4443

>d1gvja_ a.4.5.21 (A:) ETS-1 transcription factor, residues 331-440 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: ets domain
domain: ETS-1 transcription factor, residues 331-440
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.4e-42  Score=255.62  Aligned_cols=90  Identities=62%  Similarity=1.070  Sum_probs=85.7

Q ss_pred             cCCCCCceehHHHHHHhhCCCCCCCCeeEecCCCeEEEeChHHHHHHhhcccCCCCCcHHHHHHHHHHhhhcccEEecCc
Q psy18222         12 LSGSGGQVQLWQFLLELLGEPSNGGVIVWEGSQGEFRLVDPDEVARRWGLRKSKPNMNYDKLSRALRYYYDKNIMTKVHG   91 (130)
Q Consensus        12 ~~~~~g~~~LW~FLl~LL~d~~~~~~I~Wt~~~~eFri~d~~~vArlWG~~Knk~~M~YeklsRsLR~yY~kgIl~Kv~g   91 (130)
                      ..+++|+++||+||++||.|+++.+||+|||+++||+++|+++||++||.+||+++||||||||||||||++|||+||.|
T Consensus        33 ~~~~~g~i~LWqFLleLL~d~~~~~~I~Wt~~~~eFkl~d~e~VA~lWG~~Knk~~MnYeKmSRALRyYY~k~il~Kv~g  112 (142)
T d1gvja_          33 GYTGSGPIQLWQFLLELLTDKSCQSFISWTGDGWEFKLSDPDEVARRWGKRKNKPKMNYEKLSRGLRYYYDKNIIHKTAG  112 (142)
T ss_dssp             HHHTCCSCCHHHHHHHHHTCGGGTTTSEECSSTTEEECSSHHHHHHHHHHHHTCTTCCHHHHHHHHHHHHHTTSEEECTT
T ss_pred             CCCCCCeeeHHHHHHHHHcCCccCCccEEECCCCeEEeCCHHHHHHHHHhhcCCCCccHHHHhHHHHHHhhcceEEecCC
Confidence            44578999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eeeEEEeccc
Q psy18222         92 KRYAYRFDFQ  101 (130)
Q Consensus        92 ~rl~Y~F~~~  101 (130)
                      +|++|+|..+
T Consensus       113 ~rl~YkF~~~  122 (142)
T d1gvja_         113 KRYVYRFVCD  122 (142)
T ss_dssp             SSSEEEECSC
T ss_pred             cEEEEecCCC
Confidence            9999999443

>d1yo5c1 a.4.5.21 (C:247-334) Sam pointed domain containing ets transcription SPDEF {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: ets domain
domain: Sam pointed domain containing ets transcription SPDEF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.6e-41  Score=234.92  Aligned_cols=82  Identities=49%  Similarity=0.937  Sum_probs=77.9

Q ss_pred             ceehHHHHHHhhCCCC-CCCCeeEec-CCCeEEEeChHHHHHHhhcccCCCCCcHHHHHHHHHHhhhcccEEecC-ceee
Q psy18222         18 QVQLWQFLLELLGEPS-NGGVIVWEG-SQGEFRLVDPDEVARRWGLRKSKPNMNYDKLSRALRYYYDKNIMTKVH-GKRY   94 (130)
Q Consensus        18 ~~~LW~FLl~LL~d~~-~~~~I~Wt~-~~~eFri~d~~~vArlWG~~Knk~~M~YeklsRsLR~yY~kgIl~Kv~-g~rl   94 (130)
                      .++||+||++||.|++ ++++|+||| ..|||+|+||++||+|||.+||++.||||||||||||||++|||+||+ |+|+
T Consensus         2 pi~Lw~FL~~LL~d~~~~~~~I~Wt~~~~g~Fkl~~~~~VA~lWG~~Knk~~M~YeklSRALRyYY~~~il~Kv~~g~rl   81 (88)
T d1yo5c1           2 PIHLWQFLKELLLKPHSYGRFIRWLNKEKGIFKIEDSAQVARLWGIRKNRPAMNYDKLSRSIRQYYKKGIIRKPDISQRL   81 (88)
T ss_dssp             CCCHHHHHHHHHHCHHHHTTTEEEEETTTTEEEESCHHHHHHHHHHHHTCTTCCHHHHHHHHHHTTTTTSEECCSSCCTT
T ss_pred             cchHHHHHHHHHcCccccCCCeEEECCCCceEEecCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhccceeeccCCcEe
Confidence            4799999999999985 799999998 479999999999999999999999999999999999999999999997 9999


Q ss_pred             EEEec
Q psy18222         95 AYRFD   99 (130)
Q Consensus        95 ~Y~F~   99 (130)
                      +|+|.
T Consensus        82 ~Y~Fv   86 (88)
T d1yo5c1          82 VYQFV   86 (88)
T ss_dssp             EEEES
T ss_pred             EEeCC
Confidence            99995

>d1hbxg_ a.4.5.21 (G:) Serum response factor accessory protein 1a, SAP-1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: ets domain
domain: Serum response factor accessory protein 1a, SAP-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.1e-41  Score=253.09  Aligned_cols=85  Identities=56%  Similarity=1.099  Sum_probs=81.6

Q ss_pred             CceehHHHHHHhhCCCCCCCCeeEecCCCeEEEeChHHHHHHhhcccCCCCCcHHHHHHHHHHhhhcccEEecCceeeEE
Q psy18222         17 GQVQLWQFLLELLGEPSNGGVIVWEGSQGEFRLVDPDEVARRWGLRKSKPNMNYDKLSRALRYYYDKNIMTKVHGKRYAY   96 (130)
Q Consensus        17 g~~~LW~FLl~LL~d~~~~~~I~Wt~~~~eFri~d~~~vArlWG~~Knk~~M~YeklsRsLR~yY~kgIl~Kv~g~rl~Y   96 (130)
                      ..++|||||++||.|++++++|+|||++|||+|+|+++||+|||.+|||++||||||||||||||++|||+||.|+|++|
T Consensus         2 ~~i~Lw~FL~~LL~d~~~~~~I~Wt~~~geFkl~~~~~VA~lWG~rKnk~~M~YeklSRaLRyYY~k~il~Kv~g~r~~Y   81 (155)
T d1hbxg_           2 SAITLWQFLLQLLQKPQNKHMICWTSNDGQFKLLQAEEVARLWGIRKNKPNMNYDKLSRALRYYYVKNIIKKVNGQKFVY   81 (155)
T ss_dssp             CCCCHHHHTTTSSSCGGGTTTEEECSSSSCEEETTHHHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTSEEECSSCTTEE
T ss_pred             CeeeHHHHHHHHHcCccCCCceEEECCCCEEEeCCHHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCCEeeccCceeEE
Confidence            46899999999999999999999999889999999999999999999999999999999999999999999999999999


Q ss_pred             Eeccc
Q psy18222         97 RFDFQ  101 (130)
Q Consensus        97 ~F~~~  101 (130)
                      +|..+
T Consensus        82 kF~~~   86 (155)
T d1hbxg_          82 KFVSY   86 (155)
T ss_dssp             EESST
T ss_pred             EecCC
Confidence            99533

>d1puee_ a.4.5.21 (E:) Transcription factor PU.1, residues 171-259 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: ets domain
domain: Transcription factor PU.1, residues 171-259
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=8.6e-41  Score=231.22  Aligned_cols=83  Identities=35%  Similarity=0.722  Sum_probs=78.0

Q ss_pred             ceehHHHHHHhhCCCCCCCCeeEecC-CCeEEEeC--hHHHHHHhhccc-CCCCCcHHHHHHHHHHhhhcccEEecCcee
Q psy18222         18 QVQLWQFLLELLGEPSNGGVIVWEGS-QGEFRLVD--PDEVARRWGLRK-SKPNMNYDKLSRALRYYYDKNIMTKVHGKR   93 (130)
Q Consensus        18 ~~~LW~FLl~LL~d~~~~~~I~Wt~~-~~eFri~d--~~~vArlWG~~K-nk~~M~YeklsRsLR~yY~kgIl~Kv~g~r   93 (130)
                      +++||+||++||.||++.++|+|||+ +|+|+|++  |++||++||.+| |+++||||||||||||||++|||+||+ +|
T Consensus         1 qi~LwqFL~~LL~d~~~~~~I~Wt~~~~g~F~fv~~~~e~VA~lWG~~K~Nr~~MnYeklSRaLRyYY~~~il~Kv~-~r   79 (88)
T d1puee_           1 KIRLYQFLLDLLRSGDMKDSIWWVDKDKGTFQFSSKHKEALAHRWGIQKGNRKKMTYEKMARALRNYGKTGEVKKVK-KK   79 (88)
T ss_dssp             CCCHHHHHHHHHHHTCCTTTEEEEETTTTEEEECTTTHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHHSSEEECS-ST
T ss_pred             CccHHHHHHHHHcCccCCCceEeeCCCCceEEEEeCCHHHHHHHHHhhcCCCCCCcHHHHHHHHHHHHhccceeecc-ce
Confidence            57999999999999999999999994 79999996  889999999999 689999999999999999999999998 78


Q ss_pred             eEEEeccc
Q psy18222         94 YAYRFDFQ  101 (130)
Q Consensus        94 l~Y~F~~~  101 (130)
                      ++|+|+++
T Consensus        80 l~YkF~~~   87 (88)
T d1puee_          80 LTYQFSGE   87 (88)
T ss_dssp             TEEEECTT
T ss_pred             EEEecCCC
Confidence            99999765

>d1wwxa1 a.4.5.21 (A:8-101) E74-like factor 5 ese-2b {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: ets domain
domain: E74-like factor 5 ese-2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.1e-40  Score=233.05  Aligned_cols=83  Identities=45%  Similarity=0.932  Sum_probs=77.7

Q ss_pred             eehHHHHHHhhCCCC-CCCCeeEec-CCCeEEEeChHHHHHHhhcccCCCCCcHHHHHHHHHHhhhcccEEecCceeeEE
Q psy18222         19 VQLWQFLLELLGEPS-NGGVIVWEG-SQGEFRLVDPDEVARRWGLRKSKPNMNYDKLSRALRYYYDKNIMTKVHGKRYAY   96 (130)
Q Consensus        19 ~~LW~FLl~LL~d~~-~~~~I~Wt~-~~~eFri~d~~~vArlWG~~Knk~~M~YeklsRsLR~yY~kgIl~Kv~g~rl~Y   96 (130)
                      .+|||||++||.||+ ++++|+||| ..|||+|+||++||+|||.+|||++||||||||||||||++|||+|| |+|++|
T Consensus         2 ~~LwqFL~~LL~d~~~~~~~I~Wt~k~~g~Fkl~d~~~VA~lWG~~K~~~~M~YeklSRaLRyYY~~~il~Kv-~~rl~Y   80 (94)
T d1wwxa1           2 SHLWEFVRDLLLSPEENCGILEWEDREQGIFRVVKSEALAKMWGQRKKNDRMTYEKLSRALRYYYKTGILERV-DRRLVY   80 (94)
T ss_dssp             CCHHHHHHHHHHCTTTCCSCCEEEETTTTEEECSCHHHHHHHHHHHHTCTTCCHHHHHHHHHHHHHHTSEECC-SSSSEE
T ss_pred             ChHHHHHHHHHcCCccCCCeEEEEcCCCcEEEEcCHHHHHHHHHhhcCCCCCcHHHHHHHHHHHHhccceeec-CcEEEE
Confidence            589999999999975 688999999 57999999999999999999999999999999999999999999999 689999


Q ss_pred             Eecccc
Q psy18222         97 RFDFQG  102 (130)
Q Consensus        97 ~F~~~~  102 (130)
                      +|++++
T Consensus        81 ~F~~~~   86 (94)
T d1wwxa1          81 KFGKNA   86 (94)
T ss_dssp             EECSSC
T ss_pred             EeCCCc
Confidence            997654

>d2htsa_ a.4.5.22 (A:) Heat-shock transcription factor {Milk yeast (Kluyveromyces lactis) [TaxId: 28985]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Heat-shock transcription factor
domain: Heat-shock transcription factor
species: Milk yeast (Kluyveromyces lactis) [TaxId: 28985]

Probab=97.23  E-value=0.00017  Score=48.07  Aligned_cols=59  Identities=17%  Similarity=0.263  Sum_probs=47.5

Q ss_pred             hHHHHHHhhCCCCCCCCeeEecCCCeEEEeChHHHHHHhhcccCCCCCcHHHHHHHHHHh
Q psy18222         21 LWQFLLELLGEPSNGGVIVWEGSQGEFRLVDPDEVARRWGLRKSKPNMNYDKLSRALRYY   80 (130)
Q Consensus        21 LW~FLl~LL~d~~~~~~I~Wt~~~~eFri~d~~~vArlWG~~Knk~~M~YeklsRsLR~y   80 (130)
                      +-.=|.+||+|+++.++|+|...+..|.|.|++++++.--.+- -..-+|.++.|-|-.|
T Consensus         5 F~~kL~~~l~~~~~~~iI~W~~~G~~f~I~d~~~f~~~vLp~~-F~~~~~~SF~RQLn~y   63 (92)
T d2htsa_           5 FVNKLWSMVNDKSNEKFIHWSTSGESIVVPNRERFVQEVLPKY-FKHSNFASFVRQLNMY   63 (92)
T ss_dssp             HHHHHHHHHHCGGGTTTCEECTTSSSEEESCHHHHHHHTHHHH-CTTCCHHHHHHHHHHT
T ss_pred             hHHHHHHHHcCcCCCCEEEEeCCCCEEEEeCHHHHHHHHHHHh-cCCCCHHHHHHHHHhC
Confidence            3345778999999999999999999999999988876644321 2456799999999988

>d1hksa_ a.4.5.22 (A:) Heat-shock transcription factor {Drosophila melanogaster [TaxId: 7227]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Heat-shock transcription factor
domain: Heat-shock transcription factor
species: Drosophila melanogaster [TaxId: 7227]

Probab=97.01  E-value=0.00029  Score=47.51  Aligned_cols=59  Identities=17%  Similarity=0.291  Sum_probs=47.0

Q ss_pred             hHHHHHHhhCCCCCCCCeeEecCCCeEEEeChHHHHHHhhcccCCCCCcHHHHHHHHHHh
Q psy18222         21 LWQFLLELLGEPSNGGVIVWEGSQGEFRLVDPDEVARRWGLRKSKPNMNYDKLSRALRYY   80 (130)
Q Consensus        21 LW~FLl~LL~d~~~~~~I~Wt~~~~eFri~d~~~vArlWG~~Knk~~M~YeklsRsLR~y   80 (130)
                      +-.=|.+||+|++..++|+|...+..|.|.|++++++.--.. .-...+|.++.|-|-.|
T Consensus         7 F~~KL~~ml~~~~~~~iI~W~~~G~~fiI~d~~~f~~~vLp~-~Fk~~~~~SF~RQLn~y   65 (106)
T d1hksa_           7 FLAKLWRLVDDADTNRLICWTKDGQSFVIQNQAQFAKELLPL-NYKHNNMASFIRQLNMY   65 (106)
T ss_dssp             THHHHHHHHSSSTTTTTSEESTTTSCEECSCCSTTTTTTSTT-TTSCCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCcCCCCEEEEcCCCCEEEEcCHHHHHHHHhhh-hccccCHHHHHHHHHHC
Confidence            445577899999999999999999999999987766544322 23457899999999888

>d2irfg_ a.4.5.23 (G:) Interferon regulatory factor-2, IRF-2 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Interferon regulatory factor
domain: Interferon regulatory factor-2, IRF-2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.09  E-value=0.66  Score=30.94  Aligned_cols=62  Identities=16%  Similarity=0.354  Sum_probs=47.0

Q ss_pred             eehHHHHHHhhCCCCCCCCeeEec-CCCeEEEe---------Ch---HHHHHHhhcccCC-----CCCcHHHHHHHHHHh
Q psy18222         19 VQLWQFLLELLGEPSNGGVIVWEG-SQGEFRLV---------DP---DEVARRWGLRKSK-----PNMNYDKLSRALRYY   80 (130)
Q Consensus        19 ~~LW~FLl~LL~d~~~~~~I~Wt~-~~~eFri~---------d~---~~vArlWG~~Knk-----~~M~YeklsRsLR~y   80 (130)
                      +.|-.+|++.++++.+++ +.|.| ....|+|-         +.   ..+=+.|+.++|+     ..-+..+....||.=
T Consensus         2 ~rlr~WL~~qi~sg~ypG-L~W~D~~k~~FrIPWkH~~r~~~~~e~d~~iFkaWA~~tGk~~~g~d~~dp~~WKtnfRcA   80 (109)
T d2irfg_           2 MRMRPWLEEQINSNTIPG-LKWLNKEKKIFQIPWMHAARHGWDVEKDAPLFRNWAIHTGKHQPGIDKPDPKTWKANFRCA   80 (109)
T ss_dssp             CCHHHHHHHHHHTTCSTT-CEEEETTTTEEEEECCCTTSTTCCHHHHSHHHHHHHHHTTSCCTTTSCCCHHHHHHHHHHH
T ss_pred             CchHHHHHHHhccCCCCC-CEEecCCCCEEEeecccCCCCCCCccchhHHHHHHHHHcCCcCCCCCCCChhHHHHHHHHH
Confidence            578899999999999987 89999 57899996         32   2577999999886     334677765555544


Q ss_pred             h
Q psy18222         81 Y   81 (130)
Q Consensus        81 Y   81 (130)
                      -
T Consensus        81 L   81 (109)
T d2irfg_          81 M   81 (109)
T ss_dssp             H
T ss_pred             H
Confidence            3

>d2pi0a1 a.4.5.23 (A:5-110) Interferon regulatory factor 3, IRF-3 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Interferon regulatory factor
domain: Interferon regulatory factor 3, IRF-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.57  E-value=1.3  Score=29.35  Aligned_cols=62  Identities=16%  Similarity=0.321  Sum_probs=46.0

Q ss_pred             eehHHHHHHhhCCCCCCCCeeEec-CCCeEEEe-----------ChHHHHHHhhcccCC-----CCCcHHHHHHHHHHhh
Q psy18222         19 VQLWQFLLELLGEPSNGGVIVWEG-SQGEFRLV-----------DPDEVARRWGLRKSK-----PNMNYDKLSRALRYYY   81 (130)
Q Consensus        19 ~~LW~FLl~LL~d~~~~~~I~Wt~-~~~eFri~-----------d~~~vArlWG~~Knk-----~~M~YeklsRsLR~yY   81 (130)
                      .+|-.+|.+.++++.+.+ +.|.| ..+.|+|-           +...+=+.|..++|+     ..-++.+....+|.=-
T Consensus         2 ~rl~pWL~~~i~sg~ypG-L~W~d~~k~~FrIPWkHa~r~~~~~~d~~iFkaWA~~tGk~~~g~d~~dp~~WKtnfRcAL   80 (106)
T d2pi0a1           2 PRILPWLVSQLDLGQLEG-VAWVNKSRTRFRIPWKHGLRQDAQQEDFGIFQAWAEATGAYVPGRDKPDLPTWKRNFRSAL   80 (106)
T ss_dssp             CCHHHHHHHHHHHCCSTT-CEECSSSSCEEEEECCCCCC--------CHHHHHHHHTTSCCBTTBCCCHHHHHHHHHHHH
T ss_pred             cchHHHHHHHhccCCCCC-CeEecCCCCEEEeccccCCcCCCCHHHHHHHHHHHHhcccCCCCCCCCChHHHHHHHHHHH
Confidence            467789999999999964 88999 57899984           223677999998885     2456777777777554