Psyllid ID: psy18231
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 540 | 2.2.26 [Sep-21-2011] | |||||||
| Q6DH44 | 315 | WD repeat domain-containi | yes | N/A | 0.512 | 0.879 | 0.356 | 3e-44 | |
| Q9DAJ4 | 315 | WD repeat domain-containi | yes | N/A | 0.512 | 0.879 | 0.337 | 1e-43 | |
| Q9BRX9 | 315 | WD repeat domain-containi | yes | N/A | 0.501 | 0.860 | 0.337 | 2e-43 | |
| Q5BLX8 | 315 | WD repeat domain-containi | yes | N/A | 0.512 | 0.879 | 0.332 | 3e-43 | |
| Q5XGI5 | 314 | WD repeat domain-containi | yes | N/A | 0.505 | 0.869 | 0.327 | 2e-40 | |
| Q3KQ62 | 314 | WD repeat domain-containi | N/A | N/A | 0.509 | 0.875 | 0.334 | 8e-38 | |
| O95620 | 317 | tRNA-dihydrouridine(20a/2 | no | N/A | 0.196 | 0.334 | 0.528 | 4e-28 | |
| Q32M08 | 324 | tRNA-dihydrouridine(20a/2 | no | N/A | 0.196 | 0.327 | 0.518 | 3e-27 | |
| Q06063 | 367 | tRNA-dihydrouridine(20a/2 | yes | N/A | 0.174 | 0.256 | 0.489 | 3e-23 | |
| O74553 | 326 | tRNA-dihydrouridine(20a/2 | yes | N/A | 0.244 | 0.404 | 0.401 | 3e-21 |
| >sp|Q6DH44|WDR83_DANRE WD repeat domain-containing protein 83 OS=Danio rerio GN=wdr83 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 180 bits (456), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 130/365 (35%), Positives = 184/365 (50%), Gaps = 88/365 (24%)
Query: 171 RFPVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSV 230
RF DG+Y LTCGSDK +KLW+ R LLKTY GH +EV DA + D+SQ+ S +SDK+V
Sbjct: 32 RFNADGNYLLTCGSDKSLKLWSVSRGTLLKTYSGHGYEVLDADGSYDNSQLCSCSSDKTV 91
Query: 231 ILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQVRCL 290
ILW+V +GQ R+ R HA KV CV+FNE+++V++SGS D TV WD +SR PIQ+
Sbjct: 92 ILWDVASGQVTRKLRGHAGKVNCVQFNEEATVMLSGSIDGTVRCWDTRSRRMEPIQI--- 148
Query: 291 NEALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLL 350
L E++D I+S +K +++ L G + V + L G L +
Sbjct: 149 ---LDESQDGISS----LKVSEHELLTGSVDGRVRRYD------LRMGQLQ--------V 187
Query: 351 DFLGSTQIGDVTPISIHNSCFQALKEARDSITSVHVSDHEILTASLDCRIRRYDIRTGNL 410
D++GS PI+ CF +RD + L++SLD +R D TG +
Sbjct: 188 DYIGS-------PITC--VCF-----SRDGQCT--------LSSSLDSTVRLLDKSTGEM 225
Query: 411 VTDYVGEPIVDACFTRDCQCILTCSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLDS 470
+ +Y G V+ + DC C TD
Sbjct: 226 LGEYSGH--VNKGYKLDC-----CLTD--------------------------------- 245
Query: 471 KDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLW 530
KD+ + S DG +Y W LV+ S TL VGKAVV SL HPT ++++ V++W
Sbjct: 246 KDTHVLSCSEDGHVYYWDLVEGSL--TLKLPVGKAVVQSLSFHPTEPRLLTSMEGRVQVW 303
Query: 531 TAEED 535
AE +
Sbjct: 304 GAEPE 308
|
Molecular scaffold protein for various multimeric protein complexes. Acts as a module in the assembly of a multicomponent scaffold for the ERK pathway, linking ERK responses to specific agonists. Also involved in response to hypoxia by acting as a negative regulator of HIF1A/HIF-1-alpha. Danio rerio (taxid: 7955) |
| >sp|Q9DAJ4|WDR83_MOUSE WD repeat domain-containing protein 83 OS=Mus musculus GN=Wdr83 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 178 bits (451), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 126/373 (33%), Positives = 182/373 (48%), Gaps = 96/373 (25%)
Query: 171 RFPVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSV 230
RF VDG+YCLTCGSDK +KLWNP R LL+TY GH +EV DA + D+S + SG DK+V
Sbjct: 32 RFNVDGNYCLTCGSDKTLKLWNPLRGTLLRTYSGHGYEVLDAAGSFDNSHLCSGGGDKTV 91
Query: 231 ILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQVRCL 290
+LW+V TGQ VR++R HA KV V+FNE+++V++SGS D++V WD +SR P+Q
Sbjct: 92 VLWDVATGQVVRKFRGHAGKVNTVQFNEEATVILSGSIDSSVRCWDCRSRKPEPVQT--- 148
Query: 291 NEALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLL 350
L EARD I+S VK + + + G + V + L G + S
Sbjct: 149 ---LDEARDGISS----VKVSDHEILAGSVDGRVRRYD------LRMGQVSS-------- 187
Query: 351 DFLGSTQIGDVTPISIHNSCFQALKEARDSITSVHVSDHEILTASLDCRIRRYDIRTGNL 410
D++GS PI+ +CF +RD + L +SLD +R D TG L
Sbjct: 188 DYVGS-------PITC--TCF-----SRDGQCT--------LISSLDSTLRLLDKDTGEL 225
Query: 411 VTDYVG----EPIVDACFTRDCQCILTCSTDECLRLFDKATGELLEEYKGHKSGDFRIEC 466
+ +YVG + +D C + +++CS D
Sbjct: 226 LGEYVGHKNQQYKLDCCLSERDTHVVSCSED----------------------------- 256
Query: 467 CLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNN 526
GK++ W LV+ + L VG VV SL HPT +++A G +
Sbjct: 257 ---------------GKVFFWDLVEGAL--ALALPVGSNVVQSLAYHPTEPCLLTAMGGS 299
Query: 527 VKLWTAEEDYGQG 539
++ W E +G
Sbjct: 300 IQYWREETYEAEG 312
|
Molecular scaffold protein for various multimeric protein complexes. Involved in response to hypoxia by acting as a negative regulator of HIF1A/HIF-1-alpha via its interaction with EGLN3/PHD3. May promote degradation of HIF1A. May act by recruiting signaling complexes to a specific upstream activator (By similarity). Also acts as a module in the assembly of a multicomponent scaffold for the ERK pathway, linking ERK responses to specific agonists. At low concentrations it enhances ERK activation, whereas high concentrations lead to the inhibition of ERK activation. May also be involved in pre-mRNA splicing. Mus musculus (taxid: 10090) |
| >sp|Q9BRX9|WDR83_HUMAN WD repeat domain-containing protein 83 OS=Homo sapiens GN=WDR83 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 177 bits (449), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 124/367 (33%), Positives = 179/367 (48%), Gaps = 96/367 (26%)
Query: 171 RFPVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSV 230
RF VDG+YCLTCGSDK +KLWNP R LL+TY GH +EV DA + D+S + SG DK+V
Sbjct: 32 RFNVDGNYCLTCGSDKTLKLWNPLRGTLLRTYSGHGYEVLDAAGSFDNSSLCSGGGDKAV 91
Query: 231 ILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQVRCL 290
+LW+V +GQ VR++R HA KV V+FNE+++V++SGS D+++ WD +SR P+Q
Sbjct: 92 VLWDVASGQVVRKFRGHAGKVNTVQFNEEATVILSGSIDSSIRCWDCRSRRPEPVQT--- 148
Query: 291 NEALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLL 350
L EARD ++S VK + + + G + V + L G L S
Sbjct: 149 ---LDEARDGVSS----VKVSDHEILAGSVDGRVRRYD------LRMGQLFS-------- 187
Query: 351 DFLGSTQIGDVTPISIHNSCFQALKEARDSITSVHVSDHEILTASLDCRIRRYDIRTGNL 410
D++GS PI+ +CF +RD + L +SLD +R D TG L
Sbjct: 188 DYVGS-------PITC--TCF-----SRDGQCT--------LVSSLDSTLRLLDKDTGEL 225
Query: 411 VTDYVG----EPIVDACFTRDCQCILTCSTDECLRLFDKATGELLEEYKGHKSGDFRIEC 466
+ +Y G E +D C + +++CS D
Sbjct: 226 LGEYKGHKNQEYKLDCCLSERDTHVVSCSED----------------------------- 256
Query: 467 CLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNN 526
GK++ W LV+ + L VG VV SL HPT +++A G +
Sbjct: 257 ---------------GKVFFWDLVEGAL--ALALPVGSGVVQSLAYHPTEPCLLTAMGGS 299
Query: 527 VKLWTAE 533
V+ W E
Sbjct: 300 VQCWREE 306
|
Molecular scaffold protein for various multimeric protein complexes. Acts as a module in the assembly of a multicomponent scaffold for the ERK pathway, linking ERK responses to specific agonists. At low concentrations it enhances ERK activation, whereas high concentrations lead to the inhibition of ERK activation. Also involved in response to hypoxia by acting as a negative regulator of HIF1A/HIF-1-alpha via its interaction with EGLN3/PHD3. May promote degradation of HIF1A. May act by recruiting signaling complexes to a specific upstream activator (By similarity). May also be involved in pre-mRNA splicing. Homo sapiens (taxid: 9606) |
| >sp|Q5BLX8|WDR83_RAT WD repeat domain-containing protein 83 OS=Rattus norvegicus GN=Wdr83 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 176 bits (447), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 124/373 (33%), Positives = 178/373 (47%), Gaps = 96/373 (25%)
Query: 171 RFPVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSV 230
RF VDG+YCLTCGSDK +KLWNP R LL+TY GH +EV DA + D+S + SG DK+V
Sbjct: 32 RFNVDGNYCLTCGSDKTLKLWNPLRGTLLRTYSGHGYEVLDAAGSFDNSHLCSGGGDKTV 91
Query: 231 ILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQVRCL 290
+LW+V TGQ VR++R HA KV V+FNE+++V++SGS D++V WD +SR P+Q
Sbjct: 92 VLWDVATGQVVRKFRGHAGKVNTVQFNEEATVILSGSIDSSVRCWDCRSRKPEPVQT--- 148
Query: 291 NEALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLL 350
L EARD I+S VK + + + G + V + + V
Sbjct: 149 ---LDEARDGISS----VKVSDHEILAGSVDGRVRRYDLRMGQ--------------VTS 187
Query: 351 DFLGSTQIGDVTPISIHNSCFQALKEARDSITSVHVSDHEILTASLDCRIRRYDIRTGNL 410
D++GS PI+ +CF +RD + L +SLD +R D TG L
Sbjct: 188 DYVGS-------PITC--TCF-----SRDGQCT--------LISSLDSTLRLLDKDTGEL 225
Query: 411 VTDYVGEP----IVDACFTRDCQCILTCSTDECLRLFDKATGELLEEYKGHKSGDFRIEC 466
+ +YVG +D C + +++CS D
Sbjct: 226 LGEYVGHKNQKYKLDCCLSERDTHVVSCSED----------------------------- 256
Query: 467 CLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNN 526
GK++ W LV+ S L VG VV SL HP +++A G +
Sbjct: 257 ---------------GKVFFWDLVEGSL--ALALPVGSNVVQSLAYHPADPCLLTAMGGS 299
Query: 527 VKLWTAEEDYGQG 539
++ W E +G
Sbjct: 300 IQYWREETYEAEG 312
|
Molecular scaffold protein for various multimeric protein complexes. Acts as a module in the assembly of a multicomponent scaffold for the ERK pathway, linking ERK responses to specific agonists. At low concentrations it enhances ERK activation, whereas high concentrations lead to the inhibition of ERK activation (By similarity). Also involved in response to hypoxia by acting as a negative regulator of HIF1A/HIF-1-alpha via its interaction with EGLN3/PHD3. May promote degradation of HIF1A. May act by recruiting signaling complexes to a specific upstream activator. May also be involved in pre-mRNA splicing. Rattus norvegicus (taxid: 10116) |
| >sp|Q5XGI5|WDR83_XENTR WD repeat domain-containing protein 83 OS=Xenopus tropicalis GN=wdr83 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 167 bits (424), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 123/376 (32%), Positives = 180/376 (47%), Gaps = 103/376 (27%)
Query: 171 RFPVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSV 230
RF VDG+YC+TCGSDK +KLWNP++ LLKTY GH +EV D + D+SQ+ S +SDK+V
Sbjct: 32 RFNVDGNYCMTCGSDKTLKLWNPHKGTLLKTYSGHGYEVLDTAGSYDNSQMCSCSSDKTV 91
Query: 231 ILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQVRCL 290
ILW+V GQ VR++R HA KV CV+FNE+++V++SGS D+++ WD +SR IQ+
Sbjct: 92 ILWDVAQGQVVRKFRGHAGKVNCVQFNEEATVIMSGSIDSSIRCWDCRSRRPEAIQI--- 148
Query: 291 NEALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVL--MSTQHLMV 348
L EA+D I+S+ +H + L G + G L + +
Sbjct: 149 ---LDEAKDGISSI-----KISDH---------------EILAGSVDGNLRRYDLRKGEM 185
Query: 349 LLDFLGSTQIGDVTPISIHNSCFQALKEARDSITSVHVSDHEILTASLDCRIRRYDIRTG 408
D+LGS +T +S ++DS +L +SLD +R D TG
Sbjct: 186 CADYLGSP----ITCVSF----------SQDSQC--------LLASSLDSTLRLLDKDTG 223
Query: 409 NLVTDYVGEP----IVDACFTRDCQCILTCSTDECLRLFDKATGELLEEYKGHKSGDFRI 464
L+ +Y G +D+C + +L+CS D
Sbjct: 224 ELLGEYTGHQNHSYKLDSCLSEKDTHVLSCSED--------------------------- 256
Query: 465 ECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACG 524
G + W LV+ S + L VGKA V SL HP+ +++A
Sbjct: 257 -----------------GTVCFWDLVEGSLVLKL--PVGKAAVQSLSFHPSECCLLTASE 297
Query: 525 NNVKLWTA---EEDYG 537
V+LW EE+ G
Sbjct: 298 GGVQLWRGASYEEEGG 313
|
Molecular scaffold protein for various multimeric protein complexes. Acts as a module in the assembly of a multicomponent scaffold for the ERK pathway, linking ERK responses to specific agonists. Also involved in response to hypoxia by acting as a negative regulator of HIF1A/HIF-1-alpha. Xenopus tropicalis (taxid: 8364) |
| >sp|Q3KQ62|WDR83_XENLA WD repeat domain-containing protein 83 OS=Xenopus laevis GN=wdr83 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 158 bits (400), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 125/374 (33%), Positives = 180/374 (48%), Gaps = 99/374 (26%)
Query: 171 RFPVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSV 230
RF VDG+YC+TCGSDK +KLWNP++ LLKTY GH +EV D +CD+SQ+ S +SDK+V
Sbjct: 32 RFNVDGNYCMTCGSDKSLKLWNPHKGSLLKTYSGHGYEVLDTAGSCDNSQLCSCSSDKTV 91
Query: 231 ILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQVRCL 290
ILW+V GQ VR++R HA KV CV+FNE+++V+ISGS D+++ WD +SR IQ+
Sbjct: 92 ILWDVAQGQVVRKFRGHAGKVNCVQFNEEATVIISGSIDSSIRCWDCRSRRPDAIQI--- 148
Query: 291 NEALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLL 350
+ EA+D I+SV +G L + L G + +
Sbjct: 149 ---MDEAKDGISSVKVSAHEILAGSVDGNLRRY----------DLRKGEMCA-------- 187
Query: 351 DFLGSTQIGDVTPISIHNSCFQALKEARDSITSVHVSDHEILTASLDCRIRRYDIRTGNL 410
D+LGS +T +S ++DS +L +SLD +R D TG L
Sbjct: 188 DYLGSP----ITCVSF----------SQDSQC--------LLASSLDSTLRLLDKDTGEL 225
Query: 411 VTDYVGEP----IVDACFTRDCQCILTCSTDECLRLFDKATGELLEEYKGHKSGDFRIEC 466
+ +Y G +D+C + +L+CS D
Sbjct: 226 LGEYTGHQNLSYKLDSCLSEKDTHVLSCSED----------------------------- 256
Query: 467 CLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNN 526
G + W LV+ S + L VGKAVV SL HPT +++A
Sbjct: 257 ---------------GTVCFWDLVEGSLVLKL--PVGKAVVQSLSFHPTECCLLTASEGG 299
Query: 527 VKLWTA---EEDYG 537
V++W EE+ G
Sbjct: 300 VQVWRGASYEEEGG 313
|
Molecular scaffold protein for various multimeric protein complexes. Acts as a module in the assembly of a multicomponent scaffold for the ERK pathway, linking ERK responses to specific agonists. Also involved in response to hypoxia by acting as a negative regulator of HIF1A/HIF-1-alpha. Xenopus laevis (taxid: 8355) |
| >sp|O95620|DUS4L_HUMAN tRNA-dihydrouridine(20a/20b) synthase [NAD(P)+]-like OS=Homo sapiens GN=DUS4L PE=2 SV=2 | Back alignment and function description |
|---|
Score = 126 bits (317), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 56/106 (52%), Positives = 77/106 (72%)
Query: 17 LKHCDSTLWTSKLNFRQLVRSHNVDLCFTPMIIADSFIKSSKARNNEFSTSPEDTPLVVQ 76
+K C + SKL FR LVR ++ DLC+TPMI+A F+KS KAR++EF+T+ D PL+VQ
Sbjct: 28 VKVCAPMVRYSKLAFRTLVRKYSCDLCYTPMIVAADFVKSIKARDSEFTTNQGDCPLIVQ 87
Query: 77 FASNNHDDFVRATQYVAPHCNGVDLNCGCPQRWAIKEGYGCALLSK 122
FA+N+ A + V P+ NG+D+NCGCPQRWA+ EGYG L++K
Sbjct: 88 FAANDARLLSDAARIVCPYANGIDINCGCPQRWAMAEGYGACLINK 133
|
Catalyzes the synthesis of dihydrouridine, a modified base found in the D-loop of most tRNAs. Homo sapiens (taxid: 9606) EC: 1 EC: . EC: 3 EC: . EC: 1 EC: . EC: - |
| >sp|Q32M08|DUS4L_MOUSE tRNA-dihydrouridine(20a/20b) synthase [NAD(P)+]-like OS=Mus musculus GN=Dus4l PE=2 SV=1 | Back alignment and function description |
|---|
Score = 123 bits (309), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 55/106 (51%), Positives = 76/106 (71%)
Query: 17 LKHCDSTLWTSKLNFRQLVRSHNVDLCFTPMIIADSFIKSSKARNNEFSTSPEDTPLVVQ 76
+K C + SKL FR LVR ++ DLC+TPMIIA F++S KAR++EF+T+ D PL+VQ
Sbjct: 28 VKVCAPMVRYSKLAFRTLVRKYSCDLCYTPMIIAADFVRSIKARDSEFTTNQGDCPLIVQ 87
Query: 77 FASNNHDDFVRATQYVAPHCNGVDLNCGCPQRWAIKEGYGCALLSK 122
FA+N+ A V P+ NG+D+NCGCPQRWA+ +GYG L++K
Sbjct: 88 FAANDARLLSDAALLVCPYANGIDINCGCPQRWAMADGYGACLINK 133
|
Catalyzes the synthesis of dihydrouridine, a modified base found in the D-loop of most tRNAs. Mus musculus (taxid: 10090) EC: 1 EC: . EC: 3 EC: . EC: 1 EC: . EC: - |
| >sp|Q06063|DUS4_YEAST tRNA-dihydrouridine(20a/20b) synthase [NAD(P)+] OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=DUS4 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 110 bits (275), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 46/94 (48%), Positives = 69/94 (73%)
Query: 27 SKLNFRQLVRSHNVDLCFTPMIIADSFIKSSKARNNEFSTSPEDTPLVVQFASNNHDDFV 86
SKL FRQL R +NVD+ ++PMI+A ++++ AR ++ ST+ EDTPL+VQ NN D +
Sbjct: 50 SKLPFRQLCREYNVDIVYSPMILAREYVRNEHARISDLSTNNEDTPLIVQVGVNNVADLL 109
Query: 87 RATQYVAPHCNGVDLNCGCPQRWAIKEGYGCALL 120
+ + VAP+C+G+ +NCGCP + I+EG GCAL+
Sbjct: 110 KFVEMVAPYCDGIGINCGCPIKEQIREGIGCALI 143
|
Catalyzes the synthesis of dihydrouridine, a modified base found in the D-loop of most tRNAs. Specifically modifies U20a and U20b in cytoplasmic tRNAs. Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292) EC: 1 EC: . EC: 3 EC: . EC: 1 EC: . EC: 9 EC: 0 |
| >sp|O74553|DUS4_SCHPO tRNA-dihydrouridine(20a/20b) synthase [NAD(P)+] OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=dus4 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 103 bits (257), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 55/137 (40%), Positives = 81/137 (59%), Gaps = 5/137 (3%)
Query: 27 SKLNFRQLVRSHNVDLCFTPMIIADSFIKSSKARNNEFSTSPEDTPLVVQFASNNHDDFV 86
SKL FRQLVR +N D+ +TPMI+A F+ K R +FST+ D L++QF ++
Sbjct: 31 SKLPFRQLVRDYNTDIVYTPMILAKEFL-HPKGRYFDFSTNDADASLILQFGVDDPVILE 89
Query: 87 RATQYVAPHCNGVDLNCGCPQRWAIKEGYGCALLSK-QRTHPLLFSLPRTITRILYELPK 145
+A Q V P+ +G+ +NCGCPQ WAI+EG G ALL + ++ H L+ ++ T+
Sbjct: 90 KAAQLVGPYVDGIGINCGCPQTWAIQEGIGSALLDEPEKVHKLVRAVKSTLGE---SFCT 146
Query: 146 EWSIRVYRPLTVNRELF 162
E IR+ + L R L
Sbjct: 147 EVKIRIAKDLNKTRHLM 163
|
Catalyzes the synthesis of dihydrouridine, a modified base found in the D-loop of most tRNAs. Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812) EC: 1 EC: . EC: 3 EC: . EC: 1 EC: . EC: 9 EC: 0 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 540 | ||||||
| 119604689 | 344 | mitogen-activated protein kinase organiz | 0.562 | 0.883 | 0.404 | 3e-68 | |
| 432095917 | 342 | WD repeat domain-containing protein 83 [ | 0.572 | 0.903 | 0.375 | 2e-59 | |
| 270008034 | 1520 | hypothetical protein TcasGA2_TC014787 [T | 0.501 | 0.178 | 0.390 | 2e-56 | |
| 189237943 | 307 | PREDICTED: similar to wd-repeat protein | 0.5 | 0.879 | 0.396 | 2e-56 | |
| 157129471 | 307 | wd-repeat protein [Aedes aegypti] gi|108 | 0.520 | 0.915 | 0.384 | 2e-53 | |
| 157110954 | 307 | wd-repeat protein [Aedes aegypti] gi|108 | 0.494 | 0.869 | 0.385 | 1e-52 | |
| 170029328 | 305 | mitogen-activated protein kinase organiz | 0.509 | 0.901 | 0.378 | 9e-50 | |
| 195401172 | 308 | GJ16167 [Drosophila virilis] gi|19415606 | 0.494 | 0.866 | 0.368 | 3e-49 | |
| 24584567 | 308 | CG4935 [Drosophila melanogaster] gi|2106 | 0.492 | 0.863 | 0.363 | 4e-49 | |
| 195475394 | 308 | GE21387 [Drosophila yakuba] gi|194176070 | 0.494 | 0.866 | 0.356 | 7e-48 |
| >gi|119604689|gb|EAW84283.1| mitogen-activated protein kinase organizer 1, isoform CRA_b [Homo sapiens] | Back alignment and taxonomy information |
|---|
Score = 265 bits (678), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 147/363 (40%), Positives = 203/363 (55%), Gaps = 59/363 (16%)
Query: 171 RFPVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSV 230
RF VDG+YCLTCGSDK +KLWNP R LL+TY GH +EV DA + D+S + SG DK+V
Sbjct: 32 RFNVDGNYCLTCGSDKTLKLWNPLRGTLLRTYSGHGYEVLDAAGSFDNSSLCSGGGDKAV 91
Query: 231 ILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQVRCL 290
+LW+V +GQ VR++R HA KV V+FNE+++V++SGS D+++ WD +SR P+Q
Sbjct: 92 VLWDVASGQVVRKFRGHAGKVNTVQFNEEATVILSGSIDSSIRCWDCRSRRPEPVQT--- 148
Query: 291 NEALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLL 350
L EARD ++S VK + + + G A+ C
Sbjct: 149 ---LDEARDGVSS----VKVSDHEILAGR------AWWCM-------------------- 175
Query: 351 DFLGSTQIGDVTPISIHNSCFQALKEARDSITSVHVSDHEILTASLDCRIRRYDIRTGNL 410
V P + ++L+ R SV D R+RRYD+R G L
Sbjct: 176 ---------PVFPSTREAEEGESLEPGRQRFRSV------------DGRVRRYDLRMGQL 214
Query: 411 VTDYVGEPIVDACFTRDCQCILTCSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLDS 470
+DYVG PI CF+RD QC L S D LRL DK TGELL EYKGHK+ +++++CCL
Sbjct: 215 FSDYVGSPITCTCFSRDGQCTLVSSLDSTLRLLDKDTGELLGEYKGHKNQEYKLDCCLSE 274
Query: 471 KDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLW 530
+D+ + S DGK++ W LV+ + L VG VV SL HPT +++A G +V+ W
Sbjct: 275 RDTHVVSCSEDGKVFFWDLVEGAL--ALALPVGSGVVQSLAYHPTEPCLLTAMGGSVQCW 332
Query: 531 TAE 533
E
Sbjct: 333 REE 335
|
Source: Homo sapiens Species: Homo sapiens Genus: Homo Family: Hominidae Order: Primates Class: Mammalia Phylum: Chordata Superkingdom: Eukaryota |
| >gi|432095917|gb|ELK26833.1| WD repeat domain-containing protein 83 [Myotis davidii] | Back alignment and taxonomy information |
|---|
Score = 236 bits (602), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 139/370 (37%), Positives = 199/370 (53%), Gaps = 61/370 (16%)
Query: 171 RFPVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSV 230
RF VDG+YCLTCGSDK +KLWNP R LL+TY GH +EV DA + D+S + SG DK+V
Sbjct: 32 RFNVDGNYCLTCGSDKTLKLWNPLRGTLLRTYSGHGYEVLDAAGSFDNSNLCSGGGDKAV 91
Query: 231 ILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQVRCL 290
+LW+V +GQ VR++R HA KV V+FNE+++V++SGS D+T+ WD +SR P+Q
Sbjct: 92 VLWDVASGQVVRKFRGHAGKVNTVQFNEEATVILSGSIDSTIRCWDCRSRRPDPVQ---- 147
Query: 291 NEALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLL 350
L EA+D ++S VK + + + G + V + L G L S
Sbjct: 148 --KLDEAKDGVSS----VKVSDHEVLAGSVDGRVRRYD------LRMGQLFS-------- 187
Query: 351 DFLGSTQIGDVTPISIHNSCFQALKEARDSITSVHVSDHEILTASLDCRIRRYDIRTGNL 410
D++GS C QA+ +A ++ + H +
Sbjct: 188 DYVGS-------------ECGQAVGQAGEAEAAKGAPAHLPIPPG--------------- 219
Query: 411 VTDYVGEPIVDACFTRDCQCILTCSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLDS 470
PI CF+RD QC L S D LRL DK TGELL EY+GHK+ +++++CCL
Sbjct: 220 -------PITCTCFSRDGQCTLVSSLDSTLRLLDKDTGELLGEYRGHKNQEYKLDCCLSE 272
Query: 471 KDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLW 530
+D+ + S DGK++ W LV+ + L VG VV SL HPT +++A G ++ W
Sbjct: 273 RDTHVVSCSEDGKVFFWDLVEG--VLALALQVGPGVVQSLAYHPTEPCLLTAMGGSIHCW 330
Query: 531 TAEEDYGQGD 540
E +GD
Sbjct: 331 REEAYETEGD 340
|
Source: Myotis davidii Species: Myotis davidii Genus: Myotis Family: Vespertilionidae Order: Chiroptera Class: Mammalia Phylum: Chordata Superkingdom: Eukaryota |
| >gi|270008034|gb|EFA04482.1| hypothetical protein TcasGA2_TC014787 [Tribolium castaneum] | Back alignment and taxonomy information |
|---|
Score = 226 bits (577), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 142/364 (39%), Positives = 195/364 (53%), Gaps = 93/364 (25%)
Query: 170 TRFPVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKS 229
++ VDGSYCLTCGSDKK+KLWNPYR+LLLKTYGGH +EV DA +CDSSQIAS +SDKS
Sbjct: 1232 SKICVDGSYCLTCGSDKKLKLWNPYRSLLLKTYGGHGNEVLDACGSCDSSQIASCSSDKS 1291
Query: 230 VILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQVRC 289
VI+W+V+TGQP+RR+R HA+ VTCVKFNE+SSV ISGS DNT+M WDVKSR+ +PIQ
Sbjct: 1292 VIIWDVSTGQPLRRFRGHAATVTCVKFNEESSVAISGSLDNTIMCWDVKSRNTNPIQT-- 1349
Query: 290 LNEALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVL 349
LK+A+D ITS ++ T + + G + V + + NG
Sbjct: 1350 ----LKDAKDCITS----IQVTDHEILAGSVDCSVRRYDLR--NGSCHA----------- 1388
Query: 350 LDFLGSTQIGDVTPISIHNSCFQALKEARDSITSVHVSDHE---ILTASLDCRIRRYDIR 406
DF+G+ +ITSV S H+ +L +S D IR D
Sbjct: 1389 -DFVGA------------------------AITSVSFS-HDGQCVLVSSADSTIRLLDKN 1422
Query: 407 TGNLVTDYVGEPIVDACFTRDCQCILTCSTDECLRLFDKATGELLEEYKGHKSGDFRIEC 466
TG ++ +YV GH++ D IE
Sbjct: 1423 TGEMLGEYV----------------------------------------GHRTDDMNIES 1442
Query: 467 CLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNN 526
+ + D+ + GS G+++ W LV + + H+ K V+NSL HPT +++A
Sbjct: 1443 AIITSDNHVLSGSVTGELFCWDLVSGAVVQKYTHTARK-VLNSLSVHPTEDTVLTASVQT 1501
Query: 527 VKLW 530
+K+W
Sbjct: 1502 IKIW 1505
|
Source: Tribolium castaneum Species: Tribolium castaneum Genus: Tribolium Family: Tenebrionidae Order: Coleoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|189237943|ref|XP_001811459.1| PREDICTED: similar to wd-repeat protein [Tribolium castaneum] | Back alignment and taxonomy information |
|---|
Score = 226 bits (577), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 144/363 (39%), Positives = 195/363 (53%), Gaps = 93/363 (25%)
Query: 171 RFPVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSV 230
RF VDGSYCLTCGSDKK+KLWNPYR+LLLKTYGGH +EV DA +CDSSQIAS +SDKSV
Sbjct: 20 RFNVDGSYCLTCGSDKKLKLWNPYRSLLLKTYGGHGNEVLDACGSCDSSQIASCSSDKSV 79
Query: 231 ILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQVRCL 290
I+W+V+TGQP+RR+R HA+ VTCVKFNE+SSV ISGS DNT+M WDVKSR+ +PIQ
Sbjct: 80 IIWDVSTGQPLRRFRGHAATVTCVKFNEESSVAISGSLDNTIMCWDVKSRNTNPIQ---- 135
Query: 291 NEALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLL 350
LK+A+D ITS ++ T + + G + V + + NG
Sbjct: 136 --TLKDAKDCITS----IQVTDHEILAGSVDCSVRRYDLR--NGSCHA------------ 175
Query: 351 DFLGSTQIGDVTPISIHNSCFQALKEARDSITSVHVSDHE---ILTASLDCRIRRYDIRT 407
DF+G+ +ITSV S H+ +L +S D IR D T
Sbjct: 176 DFVGA------------------------AITSVSFS-HDGQCVLVSSADSTIRLLDKNT 210
Query: 408 GNLVTDYVGEPIVDACFTRDCQCILTCSTDECLRLFDKATGELLEEYKGHKSGDFRIECC 467
G ++ +YV GH++ D IE
Sbjct: 211 GEMLGEYV----------------------------------------GHRTDDMNIESA 230
Query: 468 LDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNV 527
+ + D+ + GS G+++ W LV + + H+ K V+NSL HPT +++A +
Sbjct: 231 IITSDNHVLSGSVTGELFCWDLVSGAVVQKYTHTARK-VLNSLSVHPTEDTVLTASVQTI 289
Query: 528 KLW 530
K+W
Sbjct: 290 KIW 292
|
Source: Tribolium castaneum Species: Tribolium castaneum Genus: Tribolium Family: Tenebrionidae Order: Coleoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|157129471|ref|XP_001661691.1| wd-repeat protein [Aedes aegypti] gi|108872188|gb|EAT36413.1| AAEL011493-PA [Aedes aegypti] | Back alignment and taxonomy information |
|---|
Score = 216 bits (551), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 143/372 (38%), Positives = 185/372 (49%), Gaps = 91/372 (24%)
Query: 171 RFPVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSV 230
R+ VDGSYCLTCGSDKKIKLWNP LLLKTYGGHA EV DA +CDS I S ++DKSV
Sbjct: 20 RYNVDGSYCLTCGSDKKIKLWNPRSGLLLKTYGGHAGEVMDAAGSCDSGFIVSVSADKSV 79
Query: 231 ILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQVRCL 290
I W+VTTG PVRR R HA V CVKFNEDSSV +SGS DNTVM WDV++R PIQ
Sbjct: 80 IYWDVTTGLPVRRLRGHAGTVKCVKFNEDSSVAVSGSTDNTVMCWDVRTRKLEPIQ---- 135
Query: 291 NEALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLL 350
++EA+D I+S L+ T+H ++
Sbjct: 136 --TMREAKDCISS------------------------------------LVVTEHKIIAA 157
Query: 351 DFLGSTQIGDVTPISIHNSCFQALKEARDSITS-VHVSDHE-ILTASLDCRIRRYDIRTG 408
GS + D+ + IT V SD + +L A LD IR D TG
Sbjct: 158 SLDGSIRQYDLRAGELTCDTVGV------PITHVVQTSDGQCLLAACLDSTIRLIDTDTG 211
Query: 409 NLVTDYVGEPIVDACFTRDCQCILTCSTDECLRLFDKATGELLEEYKGHKSGDFRIECCL 468
L+++Y +GH++ D+ IEC +
Sbjct: 212 ELLSEY----------------------------------------QGHRTEDYHIECAV 231
Query: 469 DSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVK 528
DSQI GS++G W L++SS++ + G VV+SL HPT IM A +V+
Sbjct: 232 IKSDSQIISGSAEGCAVVWDLLESSEVRRIRMDSG-GVVHSLAPHPTGSDIMFARRRHVE 290
Query: 529 LWTAEEDYGQGD 540
+W E+ G+ D
Sbjct: 291 MWGLPEEDGEED 302
|
Source: Aedes aegypti Species: Aedes aegypti Genus: Aedes Family: Culicidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|157110954|ref|XP_001651326.1| wd-repeat protein [Aedes aegypti] gi|108878573|gb|EAT42798.1| AAEL005708-PA [Aedes aegypti] | Back alignment and taxonomy information |
|---|
Score = 214 bits (544), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 141/366 (38%), Positives = 183/366 (50%), Gaps = 99/366 (27%)
Query: 171 RFPVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSV 230
R+ VDGSYCLTCGSDKKIKLWNP LLLKTYGGHA EV DA +CDS I S ++DKSV
Sbjct: 20 RYNVDGSYCLTCGSDKKIKLWNPRSGLLLKTYGGHAGEVMDAAGSCDSGFIVSVSADKSV 79
Query: 231 ILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQVRCL 290
I W+VTTG PVRR R HA V CVKFNEDSSV +SGS DNTVM WDV++R PIQ
Sbjct: 80 IYWDVTTGLPVRRLRGHAGTVKCVKFNEDSSVAVSGSTDNTVMCWDVRTRKLEPIQ---- 135
Query: 291 NEALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLL 350
++EA+D I+S L+ T+H ++
Sbjct: 136 --TMREAKDCISS------------------------------------LVVTEHKIIAA 157
Query: 351 DFLGSTQIGDVTPISIHNSCFQALKEARDSIT-----SVHVSDHE-ILTASLDCRIRRYD 404
GS + D +A + D++ V SD + +L A LD IR D
Sbjct: 158 SLDGSIRQYD----------LRAGELTCDTVGVPITHVVQTSDGQCLLAACLDSTIRLID 207
Query: 405 IRTGNLVTDYVGEPIVDACFTRDCQCILTCSTDECLRLFDKATGELLEEYKGHKSGDFRI 464
TG L+++Y +GH++ D+ I
Sbjct: 208 TDTGELLSEY----------------------------------------RGHRTEDYHI 227
Query: 465 ECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACG 524
EC + DSQI GS++G W L++SS++ + G VV+SL HPT +IM A
Sbjct: 228 ECAVIKSDSQIISGSAEGCAVIWDLLESSEVRRIRMDPG-GVVHSLAPHPTGSNIMFARR 286
Query: 525 NNVKLW 530
+V+LW
Sbjct: 287 RHVELW 292
|
Source: Aedes aegypti Species: Aedes aegypti Genus: Aedes Family: Culicidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|170029328|ref|XP_001842545.1| mitogen-activated protein kinase organizer 1 [Culex quinquefasciatus] gi|167881648|gb|EDS45031.1| mitogen-activated protein kinase organizer 1 [Culex quinquefasciatus] | Back alignment and taxonomy information |
|---|
Score = 204 bits (519), Expect = 9e-50, Method: Compositional matrix adjust.
Identities = 138/365 (37%), Positives = 173/365 (47%), Gaps = 90/365 (24%)
Query: 172 FPVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVI 231
VDGSYCLTCGSDKKIKLWNP+ LLLKTYGGHA EV DA +CDS I S + DKSVI
Sbjct: 22 ISVDGSYCLTCGSDKKIKLWNPHSGLLLKTYGGHAGEVMDAAGSCDSGFIVSVSQDKSVI 81
Query: 232 LWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQVRCLN 291
W+VTTGQPVRR R HA V CVKFNEDSS+ +SGS DNTVM WD+++R IQ
Sbjct: 82 YWDVTTGQPVRRLRGHAGAVQCVKFNEDSSIAVSGSTDNTVMCWDIRTRKLEAIQ----- 136
Query: 292 EALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLD 351
++EA+D ITS + K + G L G + + D
Sbjct: 137 -TMREAKDCITS--------------------LVVTEHKIIAGSLDGSIRT-------YD 168
Query: 352 FLGSTQIGDVTPISIHNSCFQALKEARDSITSVHVSDHE-ILTASLDCRIRRYDIRTGNL 410
D I I + V SD + IL A LD IR D +G L
Sbjct: 169 LRAGELTCDTVGIPITH--------------IVQTSDGQCILAACLDSTIRLVDTDSGEL 214
Query: 411 VTDYVGEPIVDACFTRDCQCILTCSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLDS 470
+ +Y KGH++ D+ IEC +
Sbjct: 215 LQEY----------------------------------------KGHRTEDYHIECAVIQ 234
Query: 471 KDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLW 530
DS I GSS+ W L++ +++ L +G VV+SL HPT IM A V++W
Sbjct: 235 GDSTIISGSSESCAVLWDLLEGNELRRLQMDLG--VVHSLAPHPTGSDIMFAKKRIVEVW 292
Query: 531 TAEED 535
D
Sbjct: 293 GKPSD 297
|
Source: Culex quinquefasciatus Species: Culex quinquefasciatus Genus: Culex Family: Culicidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|195401172|ref|XP_002059188.1| GJ16167 [Drosophila virilis] gi|194156062|gb|EDW71246.1| GJ16167 [Drosophila virilis] | Back alignment and taxonomy information |
|---|
Score = 202 bits (515), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 130/353 (36%), Positives = 175/353 (49%), Gaps = 86/353 (24%)
Query: 170 TRFPVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKS 229
R+ VDGSYC++CGSDKKIKLWNP LLLKTYGGHA EV DA +CDSS I S + DKS
Sbjct: 23 VRYNVDGSYCMSCGSDKKIKLWNPASGLLLKTYGGHADEVTDAAGSCDSSYIVSASLDKS 82
Query: 230 VILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQVRC 289
+I W+V+TG PVRR R HA V CV FNEDSS+ ISG +DN VM WD+++R P+QV
Sbjct: 83 IIYWDVSTGTPVRRLRSHAGGVRCVCFNEDSSIAISGGRDNAVMCWDIRTRRLDPVQV-- 140
Query: 290 LNEALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVL 349
+KEARD IT+V T H K L G + +H +
Sbjct: 141 ----MKEARDCITAV-----LTNEH---------------KIFAASLDGCV---RHYDIR 173
Query: 350 LDFLGSTQIGDVTPISIHNSCFQALKEARDSITSVHVSDHEILTASLDCRIRRYDIRTGN 409
+ L +IG PI+ L + RD + +L D +R D +G
Sbjct: 174 VGELTCDKIG--QPITY-------LAQTRD--------EQCLLAGCQDSALRLLDCESGG 216
Query: 410 LVTDYVGEPIVDACFTRDCQCILTCSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLD 469
L+++Y KGH++ D+ IEC +
Sbjct: 217 LLSEY----------------------------------------KGHQADDYHIECGIL 236
Query: 470 SKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSA 522
S D+ I GS G Y W L+++ + + S VV+SL +HP R+ ++ A
Sbjct: 237 SNDAHIVAGSCAGDAYVWDLLEAKVLQRIRISDNGGVVHSLATHPKRQELLFA 289
|
Source: Drosophila virilis Species: Drosophila virilis Genus: Drosophila Family: Drosophilidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|24584567|ref|NP_609782.2| CG4935 [Drosophila melanogaster] gi|21064039|gb|AAM29249.1| AT12460p [Drosophila melanogaster] gi|22946609|gb|AAF53509.2| CG4935 [Drosophila melanogaster] gi|220949828|gb|ACL87457.1| CG4935-PA [synthetic construct] | Back alignment and taxonomy information |
|---|
Score = 202 bits (513), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 128/352 (36%), Positives = 175/352 (49%), Gaps = 86/352 (24%)
Query: 171 RFPVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSV 230
R+ VDG+YCL+CGSDKKIKLWNP LLLKTYGGHA EV DA +CDSS I S + DKS+
Sbjct: 24 RYNVDGTYCLSCGSDKKIKLWNPASGLLLKTYGGHADEVTDAAGSCDSSYIVSASLDKSI 83
Query: 231 ILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQVRCL 290
I W+V+TG PVRR R HA V CV FNEDSS+ ISG +DN VM WD+++R P+QV
Sbjct: 84 IYWDVSTGAPVRRLRSHAGGVRCVCFNEDSSIAISGGRDNAVMCWDIRTRRLDPVQV--- 140
Query: 291 NEALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLL 350
+KEARD IT+ V + +N + L V + + +
Sbjct: 141 ---MKEARDCITT----VATNENRIYAASLDGCVRTYD-------------------IRV 174
Query: 351 DFLGSTQIGDVTPISIHNSCFQALKEARDSITSVHVSDHEILTASLDCRIRRYDIRTGNL 410
L +IG+ PI+ L + RD + ++ D +R D TG L
Sbjct: 175 GELTCDKIGE--PITY-------LAQTRD--------EQCLVAGCQDSVVRLLDCETGGL 217
Query: 411 VTDYVGEPIVDACFTRDCQCILTCSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLDS 470
+++Y G H+ D+ IEC + S
Sbjct: 218 LSEYRG----------------------------------------HRGDDYHIECGILS 237
Query: 471 KDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSA 522
D+QI GSSDG + + L+D + + S VV+SL +HP R+ ++ A
Sbjct: 238 NDAQIVTGSSDGDAFVYDLLDGKVLQRIRISDNGGVVHSLATHPKRQEMLFA 289
|
Source: Drosophila melanogaster Species: Drosophila melanogaster Genus: Drosophila Family: Drosophilidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|195475394|ref|XP_002089969.1| GE21387 [Drosophila yakuba] gi|194176070|gb|EDW89681.1| GE21387 [Drosophila yakuba] | Back alignment and taxonomy information |
|---|
Score = 198 bits (503), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 126/353 (35%), Positives = 174/353 (49%), Gaps = 86/353 (24%)
Query: 170 TRFPVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKS 229
R+ VDG+YCL+CGSDKKIKLWNP LLLKTYGGHA EV DA +CDSS I S + DKS
Sbjct: 23 VRYNVDGTYCLSCGSDKKIKLWNPVSGLLLKTYGGHADEVTDAAGSCDSSYIVSASLDKS 82
Query: 230 VILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQVRC 289
+I W+V+TG PVRR R HA V CV FNEDSS+ ISG +DN VM WD+++R P+QV
Sbjct: 83 IIYWDVSTGAPVRRLRSHAGGVRCVCFNEDSSIAISGGRDNVVMCWDIRTRRLDPVQV-- 140
Query: 290 LNEALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVL 349
+KEARD IT+ V + +N + L V + +
Sbjct: 141 ----MKEARDCITT----VATNENRIYAASLDGCVRTYD-------------------IR 173
Query: 350 LDFLGSTQIGDVTPISIHNSCFQALKEARDSITSVHVSDHEILTASLDCRIRRYDIRTGN 409
+ L ++G+ PI+ L + RD + ++ D +R D TG
Sbjct: 174 VGELTCDKVGE--PITY-------LAQTRD--------EQCLVAGCQDSVVRLLDCETGG 216
Query: 410 LVTDYVGEPIVDACFTRDCQCILTCSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLD 469
L+++Y G H+ D+ IEC +
Sbjct: 217 LLSEYRG----------------------------------------HRGDDYHIECGIL 236
Query: 470 SKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSA 522
S D+ I GSSDG + + L++ + + S VV+SL SHP R+ ++ A
Sbjct: 237 SNDAHIVTGSSDGDAFVYDLLEGKILQRIRISDNGGVVHSLASHPKRQEMIFA 289
|
Source: Drosophila yakuba Species: Drosophila yakuba Genus: Drosophila Family: Drosophilidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 540 | ||||||
| UNIPROTKB|Q9BRX9 | 315 | WDR83 "WD repeat domain-contai | 0.307 | 0.526 | 0.502 | 2.8e-80 | |
| UNIPROTKB|F1SEX9 | 311 | WDR83 "Uncharacterized protein | 0.3 | 0.520 | 0.503 | 5.8e-80 | |
| UNIPROTKB|E2RRL3 | 315 | WDR83 "Uncharacterized protein | 0.3 | 0.514 | 0.509 | 7.4e-80 | |
| MGI|MGI:1915086 | 315 | Wdr83 "WD repeat domain contai | 0.3 | 0.514 | 0.496 | 2.5e-79 | |
| RGD|1306947 | 315 | Wdr83 "WD repeat domain 83" [R | 0.3 | 0.514 | 0.496 | 5.2e-79 | |
| ZFIN|ZDB-GENE-040718-126 | 315 | wdr83 "WD repeat domain contai | 0.309 | 0.530 | 0.470 | 4.6e-76 | |
| FB|FBgn0028897 | 308 | CG4935 [Drosophila melanogaste | 0.237 | 0.415 | 0.626 | 4.7e-74 | |
| UNIPROTKB|Q0VCN2 | 315 | MORG1 "Mitogen-activated prote | 0.507 | 0.869 | 0.368 | 9.6e-41 | |
| WB|WBGene00018014 | 305 | F33G12.2 [Caenorhabditis elega | 0.237 | 0.419 | 0.5 | 3.1e-32 | |
| UNIPROTKB|Q19986 | 305 | F33G12.2 "Protein F33G12.2" [C | 0.237 | 0.419 | 0.5 | 3.1e-32 |
| UNIPROTKB|Q9BRX9 WDR83 "WD repeat domain-containing protein 83" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 436 (158.5 bits), Expect = 2.8e-80, Sum P(2) = 2.8e-80
Identities = 85/169 (50%), Positives = 110/169 (65%)
Query: 372 QALKEARDSITSVHVSDHEILTASLDCRIRRYDIRTGNLVTDYVGEPIVDACFTRDCQCI 431
Q L EARD ++SV VSDHEIL S+D R+RRYD+R G L +DYVG PI CF+RD QC
Sbjct: 147 QTLDEARDGVSSVKVSDHEILAGSVDGRVRRYDLRMGQLFSDYVGSPITCTCFSRDGQCT 206
Query: 432 LTCSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVD 491
L S D LRL DK TGELL EYKGHK+ +++++CCL +D+ + S DGK++ W LV+
Sbjct: 207 LVSSLDSTLRLLDKDTGELLGEYKGHKNQEYKLDCCLSERDTHVVSCSEDGKVFFWDLVE 266
Query: 492 SSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQGD 540
+ L VG VV SL HPT +++A G +V+ W EE Y D
Sbjct: 267 GALALAL--PVGSGVVQSLAYHPTEPCLLTAMGGSVQCWR-EEAYEAED 312
|
|
| UNIPROTKB|F1SEX9 WDR83 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 430 (156.4 bits), Expect = 5.8e-80, Sum P(2) = 5.8e-80
Identities = 83/165 (50%), Positives = 109/165 (66%)
Query: 372 QALKEARDSITSVHVSDHEILTASLDCRIRRYDIRTGNLVTDYVGEPIVDACFTRDCQCI 431
Q L EARD I+SV VSDHE+L S+D R+RRYD+R G L +DYVG PI CF+RD QC
Sbjct: 147 QTLDEARDGISSVKVSDHEVLAGSVDGRVRRYDLRMGQLFSDYVGSPITCTCFSRDGQCT 206
Query: 432 LTCSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVD 491
L S D LRL DK TGELL EY GHK+ +++++CCL +D+ + S DGK++ W LV+
Sbjct: 207 LVSSLDSTLRLLDKDTGELLGEYTGHKNQEYKLDCCLSERDTHVVSCSEDGKVFFWDLVE 266
Query: 492 SSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDY 536
+ L VG +VV SL HPT +++A G +V+ W EE Y
Sbjct: 267 GVLVLAL--PVGPSVVQSLAYHPTEPCLLTAMGGSVQCWR-EEAY 308
|
|
| UNIPROTKB|E2RRL3 WDR83 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 431 (156.8 bits), Expect = 7.4e-80, Sum P(2) = 7.4e-80
Identities = 84/165 (50%), Positives = 108/165 (65%)
Query: 372 QALKEARDSITSVHVSDHEILTASLDCRIRRYDIRTGNLVTDYVGEPIVDACFTRDCQCI 431
Q L EARD I+SV VSDHE+L+ S+D R+RRYD+R G L +DYVG PI CF+RD QC
Sbjct: 147 QTLDEARDGISSVKVSDHEVLSGSVDGRVRRYDLRMGQLFSDYVGSPITCTCFSRDGQCT 206
Query: 432 LTCSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVD 491
L S D LRL DK TGELL EY GHK+ +++++CCL +D+ + S DGK+Y W LV+
Sbjct: 207 LVSSLDSTLRLLDKDTGELLGEYTGHKNQEYKLDCCLSERDTHVVSCSEDGKVYFWDLVE 266
Query: 492 SSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDY 536
+ L VG VV SL HPT +++A G +V W EE Y
Sbjct: 267 GALALAL--PVGPGVVQSLAYHPTEPCLLTAMGGSVHCWR-EEAY 308
|
|
| MGI|MGI:1915086 Wdr83 "WD repeat domain containing 83" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 420 (152.9 bits), Expect = 2.5e-79, Sum P(2) = 2.5e-79
Identities = 82/165 (49%), Positives = 107/165 (64%)
Query: 372 QALKEARDSITSVHVSDHEILTASLDCRIRRYDIRTGNLVTDYVGEPIVDACFTRDCQCI 431
Q L EARD I+SV VSDHEIL S+D R+RRYD+R G + +DYVG PI CF+RD QC
Sbjct: 147 QTLDEARDGISSVKVSDHEILAGSVDGRVRRYDLRMGQVSSDYVGSPITCTCFSRDGQCT 206
Query: 432 LTCSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVD 491
L S D LRL DK TGELL EY GHK+ ++++CCL +D+ + S DGK++ W LV+
Sbjct: 207 LISSLDSTLRLLDKDTGELLGEYVGHKNQQYKLDCCLSERDTHVVSCSEDGKVFFWDLVE 266
Query: 492 SSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDY 536
+ L VG VV SL HPT +++A G +++ W EE Y
Sbjct: 267 GALALAL--PVGSNVVQSLAYHPTEPCLLTAMGGSIQYWR-EETY 308
|
|
| RGD|1306947 Wdr83 "WD repeat domain 83" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 417 (151.9 bits), Expect = 5.2e-79, Sum P(2) = 5.2e-79
Identities = 82/165 (49%), Positives = 106/165 (64%)
Query: 372 QALKEARDSITSVHVSDHEILTASLDCRIRRYDIRTGNLVTDYVGEPIVDACFTRDCQCI 431
Q L EARD I+SV VSDHEIL S+D R+RRYD+R G + +DYVG PI CF+RD QC
Sbjct: 147 QTLDEARDGISSVKVSDHEILAGSVDGRVRRYDLRMGQVTSDYVGSPITCTCFSRDGQCT 206
Query: 432 LTCSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVD 491
L S D LRL DK TGELL EY GHK+ ++++CCL +D+ + S DGK++ W LV+
Sbjct: 207 LISSLDSTLRLLDKDTGELLGEYVGHKNQKYKLDCCLSERDTHVVSCSEDGKVFFWDLVE 266
Query: 492 SSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDY 536
S L VG VV SL HP +++A G +++ W EE Y
Sbjct: 267 GSLALAL--PVGSNVVQSLAYHPADPCLLTAMGGSIQYWR-EETY 308
|
|
| ZFIN|ZDB-GENE-040718-126 wdr83 "WD repeat domain containing 83" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 419 (152.6 bits), Expect = 4.6e-76, Sum P(2) = 4.6e-76
Identities = 80/170 (47%), Positives = 112/170 (65%)
Query: 372 QALKEARDSITSVHVSDHEILTASLDCRIRRYDIRTGNLVTDYVGEPIVDACFTRDCQCI 431
Q L E++D I+S+ VS+HE+LT S+D R+RRYD+R G L DY+G PI CF+RD QC
Sbjct: 147 QILDESQDGISSLKVSEHELLTGSVDGRVRRYDLRMGQLQVDYIGSPITCVCFSRDGQCT 206
Query: 432 LTCSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVD 491
L+ S D +RL DK+TGE+L EY GH + ++++CCL KD+ + S DG +Y W LV+
Sbjct: 207 LSSSLDSTVRLLDKSTGEMLGEYSGHVNKGYKLDCCLTDKDTHVLSCSEDGHVYYWDLVE 266
Query: 492 SSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAE-EDYGQGD 540
S TL VGKAVV SL HPT ++++ V++W AE ED + +
Sbjct: 267 GSL--TLKLPVGKAVVQSLSFHPTEPRLLTSMEGRVQVWGAEPEDAAENE 314
|
|
| FB|FBgn0028897 CG4935 [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 442 (160.7 bits), Expect = 4.7e-74, Sum P(2) = 4.7e-74
Identities = 84/134 (62%), Positives = 100/134 (74%)
Query: 171 RFPVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSV 230
R+ VDG+YCL+CGSDKKIKLWNP LLLKTYGGHA EV DA +CDSS I S + DKS+
Sbjct: 24 RYNVDGTYCLSCGSDKKIKLWNPASGLLLKTYGGHADEVTDAAGSCDSSYIVSASLDKSI 83
Query: 231 ILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQVRCL 290
I W+V+TG PVRR R HA V CV FNEDSS+ ISG +DN VM WD+++R P+QV
Sbjct: 84 IYWDVSTGAPVRRLRSHAGGVRCVCFNEDSSIAISGGRDNAVMCWDIRTRRLDPVQV--- 140
Query: 291 NEALKEARDSITSV 304
+KEARD IT+V
Sbjct: 141 ---MKEARDCITTV 151
|
|
| UNIPROTKB|Q0VCN2 MORG1 "Mitogen-activated protein kinase organizer 1" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 433 (157.5 bits), Expect = 9.6e-41, P = 9.6e-41
Identities = 108/293 (36%), Positives = 160/293 (54%)
Query: 251 VTCVKFNEDSSVVISGSQDNTVMMWD------VKSRSHHPIQVRCLNEALKEARDSITSV 304
V V+FN D + ++ D T+ +W+ +++ S H +V L+ A S+ S
Sbjct: 28 VRAVRFNVDGNYCLTCGSDKTLKLWNPLRGTLLRTYSGHGYEV--LDAAGSFDNSSLCSG 85
Query: 305 HSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGST-QIGDVTP 363
+++G ++V FR G ++ V + + ++L + ST + D
Sbjct: 86 GGDKAVVLWDVASG---QVVRKFRGHA--GKVNTVQFNEEATVILSGSIDSTIRCWDCR- 139
Query: 364 ISIHNSCFQALKEARDSITSVHVSDHEILTASLDCRIRRYDIRTGNLVTDYVGEPIVDAC 423
S Q L EARD I+SV VSDHE+L S+D R+RRYD+R G L +DYVG PI C
Sbjct: 140 -SRKPEPVQTLDEARDGISSVKVSDHEVLAGSVDGRVRRYDLRMGQLFSDYVGSPITCIC 198
Query: 424 FTRDCQCILTCSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGK 483
F+RD QC L S D LRL DK TGELL EY GHK+ +++++CCL +D+ + S DGK
Sbjct: 199 FSRDGQCTLVSSLDSTLRLLDKDTGELLGEYTGHKNKEYKLDCCLSERDTHVVSCSEDGK 258
Query: 484 IYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDY 536
++ W LV+ + L VG VV SL HPT +++A G +++ W EE Y
Sbjct: 259 VFFWDLVEGALALAL--PVGPGVVQSLTYHPTEPCLLTAMGGSIQCWR-EETY 308
|
|
| WB|WBGene00018014 F33G12.2 [Caenorhabditis elegans (taxid:6239)] | Back alignment and assigned GO terms |
|---|
Score = 355 (130.0 bits), Expect = 3.1e-32, P = 3.1e-32
Identities = 67/134 (50%), Positives = 95/134 (70%)
Query: 171 RFPVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSV 230
R+ VDG+YC+TCGSDK +KLWNP ++ LLKTY G +EV DA ++ D+SQIA+G +D++
Sbjct: 23 RYNVDGNYCVTCGSDKTVKLWNPLKSSLLKTYSGTGNEVLDAASSSDNSQIAAGGADRAC 82
Query: 231 ILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQVRCL 290
+++V TG+ +RRWR H ++V V FNE+SSVV SGS D T+ +D +SRS PIQ+
Sbjct: 83 TVFDVETGKQLRRWRTHGAQVNAVAFNEESSVVFSGSMDCTMQAFDCRSRSEKPIQI--- 139
Query: 291 NEALKEARDSITSV 304
E+ D I S+
Sbjct: 140 ---FNESTDGILSI 150
|
|
| UNIPROTKB|Q19986 F33G12.2 "Protein F33G12.2" [Caenorhabditis elegans (taxid:6239)] | Back alignment and assigned GO terms |
|---|
Score = 355 (130.0 bits), Expect = 3.1e-32, P = 3.1e-32
Identities = 67/134 (50%), Positives = 95/134 (70%)
Query: 171 RFPVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSV 230
R+ VDG+YC+TCGSDK +KLWNP ++ LLKTY G +EV DA ++ D+SQIA+G +D++
Sbjct: 23 RYNVDGNYCVTCGSDKTVKLWNPLKSSLLKTYSGTGNEVLDAASSSDNSQIAAGGADRAC 82
Query: 231 ILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQVRCL 290
+++V TG+ +RRWR H ++V V FNE+SSVV SGS D T+ +D +SRS PIQ+
Sbjct: 83 TVFDVETGKQLRRWRTHGAQVNAVAFNEESSVVFSGSMDCTMQAFDCRSRSEKPIQI--- 139
Query: 291 NEALKEARDSITSV 304
E+ D I S+
Sbjct: 140 ---FNESTDGILSI 150
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 540 | |||
| cd02801 | 231 | cd02801, DUS_like_FMN, Dihydrouridine synthase-lik | 8e-35 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 4e-34 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 8e-28 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 1e-21 | |
| COG0042 | 323 | COG0042, COG0042, tRNA-dihydrouridine synthase [Tr | 1e-19 | |
| pfam01207 | 309 | pfam01207, Dus, Dihydrouridine synthase (Dus) | 3e-17 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 4e-17 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 4e-14 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 2e-13 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 3e-11 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 9e-10 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 9e-09 | |
| smart00320 | 40 | smart00320, WD40, WD40 repeats | 1e-07 | |
| pfam00400 | 39 | pfam00400, WD40, WD domain, G-beta repeat | 8e-07 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 2e-05 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 4e-04 | |
| TIGR00737 | 319 | TIGR00737, nifR3_yhdG, putative TIM-barrel protein | 0.001 | |
| TIGR00742 | 318 | TIGR00742, yjbN, tRNA dihydrouridine synthase A | 0.001 | |
| PLN00181 | 793 | PLN00181, PLN00181, protein SPA1-RELATED; Provisio | 0.003 | |
| PLN00181 | 793 | PLN00181, PLN00181, protein SPA1-RELATED; Provisio | 0.004 |
| >gnl|CDD|239200 cd02801, DUS_like_FMN, Dihydrouridine synthase-like (DUS-like) FMN-binding domain | Back alignment and domain information |
|---|
Score = 130 bits (329), Expect = 8e-35
Identities = 33/97 (34%), Positives = 51/97 (52%), Gaps = 1/97 (1%)
Query: 27 SKLNFRQLVRSHNVDLCFTPMIIADSFIKSSKARNNEFSTSPEDTPLVVQFASNNHDDFV 86
+ L FR L R + DL +T MI A + ++ ++ R + +PE+ PL+VQ ++ +
Sbjct: 11 TDLPFRLLCRRYGADLVYTEMISAKALLRGNRKRLRLLTRNPEERPLIVQLGGSDPETLA 70
Query: 87 RATQYVAP-HCNGVDLNCGCPQRWAIKEGYGCALLSK 122
A + V +G+DLN GCP K G G ALL
Sbjct: 71 EAAKIVEELGADGIDLNMGCPSPKVTKGGAGAALLKD 107
|
Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present. Length = 231 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 130 bits (329), Expect = 4e-34
Identities = 81/323 (25%), Positives = 134/323 (41%), Gaps = 54/323 (16%)
Query: 171 RFPVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSV 230
F DG T D IK+W+ LL+T GH V D A+ D + +ASG+SDK++
Sbjct: 16 AFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTI 75
Query: 231 ILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQVRCL 290
LW++ TG+ VR H S V+ V F+ D ++ S S+D T+ +WDV++ +CL
Sbjct: 76 RLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETG-------KCL 128
Query: 291 NEALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLL 350
L+ D + SV +++ + + + T + L
Sbjct: 129 T-TLRGHTDWVNSV--AFSPDGTFVASSSQDGTIKLWD------------LRTGKCVATL 173
Query: 351 DFLGSTQIGDVTPISIHNSCFQALKEARDSITSVHVSD--HEILTASLDCRIRRYDIRTG 408
H + SV S ++L++S D I+ +D+ TG
Sbjct: 174 TG--------------HTG----------EVNSVAFSPDGEKLLSSSSDGTIKLWDLSTG 209
Query: 409 NLVTDYVG--EPIVDACFTRDCQCILTCSTDECLRLFDKATGELLEEYKGHKSGDFRIEC 466
+ G + F+ D + + S D +R++D TGE ++ GH + +
Sbjct: 210 KCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTN---SVTS 266
Query: 467 CLDSKDSQIFC-GSSDGKIYKWQ 488
S D + GS+DG I W
Sbjct: 267 LAWSPDGKRLASGSADGTIRIWD 289
|
Length = 289 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 112 bits (283), Expect = 8e-28
Identities = 76/340 (22%), Positives = 136/340 (40%), Gaps = 59/340 (17%)
Query: 198 LLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFN 257
L +T GH V + D +A+G+ D ++ +W++ TG+ +R + H V V +
Sbjct: 1 LRRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAAS 60
Query: 258 EDSSVVISGSQDNTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHLSN 317
D + + SGS D T+ +WD+++ C+ L ++SV
Sbjct: 61 ADGTYLASGSSDKTIRLWDLETG-------ECVRT-LTGHTSYVSSVA------------ 100
Query: 318 GLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEA 377
++ + ++ DV C L+
Sbjct: 101 ----------------------FSPDGRILSSSSRDKTIKVWDVET----GKCLTTLRGH 134
Query: 378 RDSITSVHVSDHE--ILTASLDCRIRRYDIRTGNLVTDYVG--EPIVDACFTRDCQCILT 433
D + SV S + ++S D I+ +D+RTG V G + F+ D + +L+
Sbjct: 135 TDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLS 194
Query: 434 CSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSS-DGKIYKWQLVDS 492
S+D ++L+D +TG+ L +GH++G + S D + S DG I W L
Sbjct: 195 SSSDGTIKLWDLSTGKCLGTLRGHENG---VNSVAFSPDGYLLASGSEDGTIRVWDLRTG 251
Query: 493 SQISTLI-HSVGKAVVNSLCSHPTRKHIMSACGNN-VKLW 530
+ TL H+ V SL P K + S + +++W
Sbjct: 252 ECVQTLSGHTNS---VTSLAWSPDGKRLASGSADGTIRIW 288
|
Length = 289 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 94.7 bits (236), Expect = 1e-21
Identities = 66/272 (24%), Positives = 111/272 (40%), Gaps = 35/272 (12%)
Query: 148 SIRVYRPLTVNRELFVLSGLMHT------RFPVDGSYCLTCGSDKKIKLWNPYRNLLLKT 201
+I+V+ L L L G HT DG+Y + SDK I+LW+ ++T
Sbjct: 32 TIKVWD-LETGELLRTLKG--HTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVRT 88
Query: 202 YGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSS 261
GH V+ + D ++S + DK++ +W+V TG+ + R H V V F+ D +
Sbjct: 89 LTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGT 148
Query: 262 VVISGSQDNTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHLSNGLLT 321
V S SQD T+ +WD+ R+ + L + SV + + LS+
Sbjct: 149 FVASSSQDGTIKLWDL--RTGKCVAT------LTGHTGEVNSV-AFSPDGEKLLSSS-SD 198
Query: 322 KLVF-----AFRCKYL-----NGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCF 371
+ +C NG+ S +L+ G+ ++ D+
Sbjct: 199 GTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECV---- 254
Query: 372 QALKEARDSITSVHVSDHE--ILTASLDCRIR 401
Q L +S+TS+ S + + S D IR
Sbjct: 255 QTLSGHTNSVTSLAWSPDGKRLASGSADGTIR 286
|
Length = 289 |
| >gnl|CDD|223120 COG0042, COG0042, tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 89.7 bits (223), Expect = 1e-19
Identities = 31/116 (26%), Positives = 52/116 (44%), Gaps = 5/116 (4%)
Query: 31 FRQLVRSHNV-DLCFTPMIIADSFIKSSKARNNEFSTSPEDTPLVVQFASNNHDDFVRAT 89
FR+L R DL +T M+ A + + K E+ P+ VQ ++ + A
Sbjct: 26 FRRLARELGAYDLLYTEMVSAKALLHGRKKFLLLLDELEEERPVAVQLGGSDPELLAEAA 85
Query: 90 QYVAPHC-NGVDLNCGCPQRWAIKEGYGCALLSKQRTHPLLFSLPRTITRILYELP 144
+ + +DLNCGCP +K G G ALL + LL + + + + ++P
Sbjct: 86 KIAEELGADIIDLNCGCPSPKVVKGGAGAALL---KNPELLAEIVKAMVEAVGDIP 138
|
Length = 323 |
| >gnl|CDD|216365 pfam01207, Dus, Dihydrouridine synthase (Dus) | Back alignment and domain information |
|---|
Score = 82.4 bits (204), Expect = 3e-17
Identities = 37/127 (29%), Positives = 56/127 (44%), Gaps = 12/127 (9%)
Query: 27 SKLNFRQLVRSHNV-DLCFTPMIIADSFIKSSKARNNEFSTSPEDTPLVVQFASNNHDDF 85
+ L FR+LVR + DL T M+ A + ++ K R E TPL VQ ++
Sbjct: 9 TDLPFRRLVREYGAGDLVVTEMVTAKAQLRPEKQRELMLPELEEPTPLAVQLGGSDPALL 68
Query: 86 VRATQYVAPH-CNGVDLNCGCPQRWAIKEGYGCALLSKQRTHPLLFSLPRTITRILYELP 144
A + VA + +D+N GCP + + G G ALL P + +I+ +
Sbjct: 69 AEAAKLVADLGADIIDINMGCPAKKVTRGGAGAALLRD----------PDLVAQIVKAVV 118
Query: 145 KEWSIRV 151
K I V
Sbjct: 119 KAVDIPV 125
|
Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 from Saccharomyces cerevisiae acts on pre-tRNA-Phe, while Dus 2 acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD. Some family members may be targeted to the mitochondria and even have a role in mitochondria. Length = 309 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 83.6 bits (205), Expect = 4e-17
Identities = 96/381 (25%), Positives = 160/381 (41%), Gaps = 36/381 (9%)
Query: 172 FPVDGSYCLTCGSDKKIKLWNPY--RNLLLKTYGGHAHEVND-ATAACDSSQIASGAS-- 226
F DG L+ SD IKLW+ L+ G H V+ A ++ D + I +S
Sbjct: 73 FSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSL 132
Query: 227 DKSVILWEVTT-GQPVRRWREHASKVTCVKFNEDSSVVISGSQ-DNTVMMWDVKSR---- 280
D +V LW+++T G+ +R H+ VT + F+ D ++ SGS D T+ +WD+++
Sbjct: 133 DGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLS 192
Query: 281 --SHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSG 338
+ H V L + + + LS G L + L+G
Sbjct: 193 TLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWD-LSTGKLLRST-------LSGHSDS 244
Query: 339 VLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEARDSITSVHVSDHE--ILTASL 396
V+ S LL S + + +S + L S+ SV S + + S
Sbjct: 245 VVSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSS 304
Query: 397 DCRIRRYDIRTGNLVT----DYVGEPIVDACFTRDCQCILT-CSTDECLRLFDKATGELL 451
D +R +D+ TG L++ P+ F+ D +++ S D +RL+D TG+ L
Sbjct: 305 DGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPL 364
Query: 452 EEYKGHKSGDFRIECCLDSKDSQIFC-GSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSL 510
+ +GH + + S D ++ GS+DG + W L S + L + V SL
Sbjct: 365 KTLEGHSN----VLSVSFSPDGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSR--VTSL 418
Query: 511 CSHPTRKHIMSAC-GNNVKLW 530
P K + S N ++LW
Sbjct: 419 DFSPDGKSLASGSSDNTIRLW 439
|
Length = 466 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 74.4 bits (181), Expect = 4e-14
Identities = 65/310 (20%), Positives = 117/310 (37%), Gaps = 23/310 (7%)
Query: 243 RWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKS--------RSHHPIQVRCLNEAL 294
R H +T + F+ D +++SGS D T+ +WD+ + H V L +
Sbjct: 60 LLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSS 119
Query: 295 KEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLG 354
+ + + SL T KL+ + + L G
Sbjct: 120 PDGNSILLASSSLDG-TVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDG 178
Query: 355 STQIGDVTPISIHNSCFQALKEARDSITSVHVSDHE---ILTASLDCRIRRYDIRTGNLV 411
+ ++ D+ L D ++S+ S I + S D IR +D+ TG L+
Sbjct: 179 TIKLWDLRT----GKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLL 234
Query: 412 TDYVGEPI--VDACFTRDCQCILTCSTDECLRLFD-KATGELLEEYKGHKSGDFRIECCL 468
+ V + F+ D + + S+D +RL+D +++ LL GH S +
Sbjct: 235 RSTLSGHSDSVVSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSV--AF 292
Query: 469 DSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNN-- 526
+ GSSDG + W L +S+L + V+SL P ++S ++
Sbjct: 293 SPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGT 352
Query: 527 VKLWTAEEDY 536
++LW
Sbjct: 353 IRLWDLRTGK 362
|
Length = 466 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 72.4 bits (176), Expect = 2e-13
Identities = 86/348 (24%), Positives = 139/348 (39%), Gaps = 51/348 (14%)
Query: 148 SIRVYRPLTVNRELFVLSGLMHTRFPV----DGSYCLTCGS-DKKIKLWNPYRNLLLKTY 202
+++++ T + + L G + + DG + S D IKLW+ L T
Sbjct: 135 TVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTL 194
Query: 203 GGHAHEVNDATAACDSS-QIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSS 261
GH V+ + D IASG+SD ++ LW+++TG+ +R S F+ D S
Sbjct: 195 AGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVSSFSPDGS 254
Query: 262 VVISGSQDNTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHLSNGLLT 321
++ SGS D T+ +WD++S S ++ + S+ SV
Sbjct: 255 LLASGSSDGTIRLWDLRS-SSSLLRTLSGHS------SSVLSVAFSPDGKL--------- 298
Query: 322 KLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEARDSI 381
L SG S+ + L D + + H +L + D
Sbjct: 299 -------------LASG---SSDGTVRLWDLETGKLL-SSLTLKGHEGPVSSLSFSPD-- 339
Query: 382 TSVHVSDHEILTASLDCRIRRYDIRTGNLV-TDYVGEPIVDACFTRDCQCILTCSTDECL 440
+ S D IR +D+RTG + T ++ F+ D + + + STD +
Sbjct: 340 -----GSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHSNVLSVSFSPDGRVVSSGSTDGTV 394
Query: 441 RLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFC-GSSDGKIYKW 487
RL+D +TG LL GH S R+ S D + GSSD I W
Sbjct: 395 RLWDLSTGSLLRNLDGHTS---RVTSLDFSPDGKSLASGSSDNTIRLW 439
|
Length = 466 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 63.9 bits (156), Expect = 3e-11
Identities = 33/119 (27%), Positives = 51/119 (42%), Gaps = 9/119 (7%)
Query: 418 PIVDACFTRDCQCILTCSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFC 477
+ F+ D + + T S D ++++D TGELL KGH + D +
Sbjct: 11 GVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGT--YLAS 68
Query: 478 GSSDGKIYKWQLVDSSQISTLI-HSVGKAVVNSLCSHPTRKHIMSACG--NNVKLWTAE 533
GSSD I W L + TL H + V+S+ P I+S+ +K+W E
Sbjct: 69 GSSDKTIRLWDLETGECVRTLTGH---TSYVSSVAFSPDG-RILSSSSRDKTIKVWDVE 123
|
Length = 289 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 60.5 bits (145), Expect = 9e-10
Identities = 65/281 (23%), Positives = 113/281 (40%), Gaps = 51/281 (18%)
Query: 173 PVDGSYCLTCGSDKKIKLWN-PYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVI 231
P G + SD I+LW+ LL T GH+ V + + D S +ASG+SD ++
Sbjct: 208 PDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVSSFSP-DGSLLASGSSDGTIR 266
Query: 232 LWEV-TTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQVRCL 290
LW++ ++ +R H+S V V F+ D ++ SGS D TV +WD+++
Sbjct: 267 LWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLET----------- 315
Query: 291 NEALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLL 350
L+ S G ++ L F+ L
Sbjct: 316 --------------GKLLSSLTLKGHEGPVSSLSFSPDGSLL------------------ 343
Query: 351 DFLGSTQIGDVTPISIHNSCFQALKEARDSITSVHVSDHEIL--TASLDCRIRRYDIRTG 408
G + G + + E ++ SV S + + S D +R +D+ TG
Sbjct: 344 -VSGGSDDGTIRLWDLRTGKPLKTLEGHSNVLSVSFSPDGRVVSSGSTDGTVRLWDLSTG 402
Query: 409 NLVTDYVG--EPIVDACFTRDCQCILTCSTDECLRLFDKAT 447
+L+ + G + F+ D + + + S+D +RL+D T
Sbjct: 403 SLLRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLWDLKT 443
|
Length = 466 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 57.4 bits (137), Expect = 9e-09
Identities = 43/140 (30%), Positives = 71/140 (50%), Gaps = 2/140 (1%)
Query: 145 KEWSIRVYRPLTVNRELFVLSGLMHTRFPVDGSYCLTCGS-DKKIKLWNPYRNLLLKTYG 203
+ W + + L+ + F DGS ++ GS D I+LW+ LKT
Sbjct: 309 RLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLE 368
Query: 204 GHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVV 263
GH V + + D ++SG++D +V LW+++TG +R H S+VT + F+ D +
Sbjct: 369 GH-SNVLSVSFSPDGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSL 427
Query: 264 ISGSQDNTVMMWDVKSRSHH 283
SGS DNT+ +WD+K+
Sbjct: 428 ASGSSDNTIRLWDLKTSLKS 447
|
Length = 466 |
| >gnl|CDD|197651 smart00320, WD40, WD40 repeats | Back alignment and domain information |
|---|
Score = 47.7 bits (114), Expect = 1e-07
Identities = 14/40 (35%), Positives = 23/40 (57%)
Query: 237 TGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWD 276
+G+ ++ + H VT V F+ D + SGS D T+ +WD
Sbjct: 1 SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40 |
| >gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat | Back alignment and domain information |
|---|
Score = 45.4 bits (108), Expect = 8e-07
Identities = 16/39 (41%), Positives = 24/39 (61%)
Query: 238 GQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWD 276
G+ +R + H VT V F+ D +++ SGS D TV +WD
Sbjct: 1 GKLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39
|
Length = 39 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 46.2 bits (110), Expect = 2e-05
Identities = 17/70 (24%), Positives = 35/70 (50%)
Query: 165 SGLMHTRFPVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASG 224
+G+ F DG + D I++W+ ++T GH + V + D ++ASG
Sbjct: 220 NGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASG 279
Query: 225 ASDKSVILWE 234
++D ++ +W+
Sbjct: 280 SADGTIRIWD 289
|
Length = 289 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 42.8 bits (99), Expect = 4e-04
Identities = 34/145 (23%), Positives = 60/145 (41%), Gaps = 14/145 (9%)
Query: 130 FSLPRTITRILYELPKEWSIRVYRPLTVN--RELFVLSGLMHTRFPVDGSYCLTCGSDKK 187
S + ++ + +IR++ T + L S ++ F DG + +D
Sbjct: 334 LSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHSNVLSVSFSPDGRVVSSGSTDGT 393
Query: 188 IKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPVRRWREH 247
++LW+ LL+ GH V + D +ASG+SD ++ LW++ T
Sbjct: 394 VRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLWDLKTSLKS------ 447
Query: 248 ASKVTCVKFNEDSSVVISGSQDNTV 272
V F+ D V+ S S D +V
Sbjct: 448 ------VSFSPDGKVLASKSSDLSV 466
|
Length = 466 |
| >gnl|CDD|129820 TIGR00737, nifR3_yhdG, putative TIM-barrel protein, nifR3 family | Back alignment and domain information |
|---|
Score = 40.8 bits (96), Expect = 0.001
Identities = 32/135 (23%), Positives = 55/135 (40%), Gaps = 21/135 (15%)
Query: 27 SKLNFRQLVRSHNVDLCFTPMIIADSFIKSSKARNNEFSTSPEDTPLVVQFASNNHDDFV 86
+ FR+LV + L M+ +++ + S+ + ++TP+ VQ ++ D
Sbjct: 19 TDSPFRRLVAEYGAGLTVCEMVSSEAIVYDSQRTMRLLDIAEDETPISVQLFGSDPDTMA 78
Query: 87 RATQ----YVAPHCNGVDLNCGCPQRWAIKEGYGCALLSKQRTHPLLFSLPRTITRILYE 142
A + A +D+N GCP K+G G ALL P I +I+
Sbjct: 79 EAAKINEELGADI---IDINMGCPVPKITKKGAGSALLRD----------PDLIGKIVKA 125
Query: 143 LPKEWSIRVYRPLTV 157
+ V P+TV
Sbjct: 126 VVDA----VDIPVTV 136
|
This model represents one branch of COG0042 (Predicted TIM-barrel enzymes, possibly dehydrogenases, nifR3 family). This branch includes NifR3 itself, from Rhodobacter capsulatus. It excludes a broadly distributed but more sparsely populated subfamily that contains sll0926 from Synechocystis PCC6803, HI0634 from Haemophilus influenzae, and BB0225 from Borrelia burgdorferi. It also excludes a shorter and more distant archaeal subfamily.The function of nifR3, a member of this family, is unknown, but it is found in an operon with nitrogen-sensing two component regulators in Rhodobacter capsulatus.Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase [Unknown function, General]. Length = 319 |
| >gnl|CDD|129825 TIGR00742, yjbN, tRNA dihydrouridine synthase A | Back alignment and domain information |
|---|
Score = 40.6 bits (95), Expect = 0.001
Identities = 25/85 (29%), Positives = 44/85 (51%), Gaps = 7/85 (8%)
Query: 25 WTSKLNFRQLVR--SHNVDLCFTPMIIADSFIKSSKARNNEFSTSPEDTPLVVQFASNNH 82
WT + +FR +R S + L +T MI A + I K +F SPE++P+ +Q ++
Sbjct: 11 WTDR-HFRYFLRLLSKHT-LLYTEMITAKAIIHGDKKDILKF--SPEESPVALQLGGSDP 66
Query: 83 DDFVRATQYV-APHCNGVDLNCGCP 106
+D + + + ++LN GCP
Sbjct: 67 NDLAKCAKIAEKRGYDEINLNVGCP 91
|
This model represents one branch of COG0042 (Predicted TIM-barrel enzymes, possibly dehydrogenases, nifR3 family). It represents a distinct subset by a set of shared unique motifs, a conserved pattern of insertions/deletions relative to other nifR3 homologs, and by subclustering based on cross-genome bidirectional best hits. Members are found in species as diverse as the proteobacteria, a spirochete, a cyanobacterium, and Deinococcus radiodurans. NifR3 itself, a protein of unknown function associated with nitrogen regulation in Rhodobacter capsulatus, is not a member of this branch. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase [Protein synthesis, tRNA and rRNA base modification]. Length = 318 |
| >gnl|CDD|177776 PLN00181, PLN00181, protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Score = 40.1 bits (93), Expect = 0.003
Identities = 19/60 (31%), Positives = 34/60 (56%), Gaps = 1/60 (1%)
Query: 219 SQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNE-DSSVVISGSQDNTVMMWDV 277
SQ+AS + V +W+V Q V +EH +V + ++ D +++ SGS D +V +W +
Sbjct: 546 SQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSI 605
|
Length = 793 |
| >gnl|CDD|177776 PLN00181, PLN00181, protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Score = 39.7 bits (92), Expect = 0.004
Identities = 25/97 (25%), Positives = 52/97 (53%), Gaps = 3/97 (3%)
Query: 185 DKKIKLWNPYRNLLLKTYGGHAHEV-NDATAACDSSQIASGASDKSVILWEVTTGQPVRR 243
+ +++W+ R+ L+ H V + ++ D + +ASG+ D SV LW + G +
Sbjct: 554 EGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGT 613
Query: 244 WREHASKVTCVKFNEDSSVVIS-GSQDNTVMMWDVKS 279
+ A+ + CV+F +S ++ GS D+ V +D+++
Sbjct: 614 IKTKAN-ICCVQFPSESGRSLAFGSADHKVYYYDLRN 649
|
Length = 793 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 540 | |||
| KOG0271|consensus | 480 | 100.0 | ||
| KOG0271|consensus | 480 | 100.0 | ||
| KOG0272|consensus | 459 | 100.0 | ||
| KOG0316|consensus | 307 | 100.0 | ||
| KOG0286|consensus | 343 | 100.0 | ||
| KOG0279|consensus | 315 | 100.0 | ||
| KOG0315|consensus | 311 | 100.0 | ||
| KOG0272|consensus | 459 | 100.0 | ||
| KOG0319|consensus | 775 | 100.0 | ||
| KOG0318|consensus | 603 | 100.0 | ||
| KOG0318|consensus | 603 | 100.0 | ||
| KOG0284|consensus | 464 | 100.0 | ||
| KOG0295|consensus | 406 | 100.0 | ||
| KOG0273|consensus | 524 | 100.0 | ||
| KOG0319|consensus | 775 | 100.0 | ||
| KOG0285|consensus | 460 | 100.0 | ||
| KOG0286|consensus | 343 | 100.0 | ||
| KOG0265|consensus | 338 | 100.0 | ||
| KOG0281|consensus | 499 | 100.0 | ||
| KOG0315|consensus | 311 | 100.0 | ||
| KOG0293|consensus | 519 | 100.0 | ||
| KOG0279|consensus | 315 | 100.0 | ||
| KOG0273|consensus | 524 | 100.0 | ||
| KOG0645|consensus | 312 | 100.0 | ||
| KOG0282|consensus | 503 | 100.0 | ||
| KOG0266|consensus | 456 | 100.0 | ||
| KOG0263|consensus | 707 | 100.0 | ||
| KOG0313|consensus | 423 | 100.0 | ||
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 100.0 | |
| KOG0291|consensus | 893 | 100.0 | ||
| KOG0263|consensus | 707 | 100.0 | ||
| KOG0278|consensus | 334 | 100.0 | ||
| KOG0296|consensus | 399 | 100.0 | ||
| KOG0291|consensus | 893 | 100.0 | ||
| KOG0306|consensus | 888 | 100.0 | ||
| KOG0276|consensus | 794 | 100.0 | ||
| KOG0295|consensus | 406 | 100.0 | ||
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 100.0 | |
| KOG0284|consensus | 464 | 100.0 | ||
| KOG0645|consensus | 312 | 100.0 | ||
| KOG0281|consensus | 499 | 100.0 | ||
| KOG0292|consensus | 1202 | 100.0 | ||
| KOG0296|consensus | 399 | 100.0 | ||
| KOG0275|consensus | 508 | 100.0 | ||
| KOG0643|consensus | 327 | 100.0 | ||
| KOG0285|consensus | 460 | 100.0 | ||
| KOG1407|consensus | 313 | 100.0 | ||
| KOG0266|consensus | 456 | 100.0 | ||
| KOG0288|consensus | 459 | 100.0 | ||
| KOG0292|consensus | 1202 | 100.0 | ||
| KOG0306|consensus | 888 | 100.0 | ||
| KOG0276|consensus | 794 | 100.0 | ||
| KOG0265|consensus | 338 | 100.0 | ||
| KOG1446|consensus | 311 | 100.0 | ||
| KOG0274|consensus | 537 | 100.0 | ||
| KOG0283|consensus | 712 | 100.0 | ||
| KOG0310|consensus | 487 | 100.0 | ||
| KOG0640|consensus | 430 | 100.0 | ||
| KOG0268|consensus | 433 | 100.0 | ||
| KOG0275|consensus | 508 | 100.0 | ||
| KOG0316|consensus | 307 | 100.0 | ||
| KOG0973|consensus | 942 | 100.0 | ||
| KOG0277|consensus | 311 | 100.0 | ||
| KOG0293|consensus | 519 | 100.0 | ||
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 100.0 | |
| KOG1539|consensus | 910 | 100.0 | ||
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 100.0 | |
| KOG0282|consensus | 503 | 100.0 | ||
| KOG0305|consensus | 484 | 100.0 | ||
| KOG0641|consensus | 350 | 100.0 | ||
| KOG0274|consensus | 537 | 100.0 | ||
| KOG0647|consensus | 347 | 100.0 | ||
| KOG0277|consensus | 311 | 100.0 | ||
| PTZ00421 | 493 | coronin; Provisional | 100.0 | |
| KOG0305|consensus | 484 | 100.0 | ||
| KOG0299|consensus | 479 | 100.0 | ||
| KOG0278|consensus | 334 | 100.0 | ||
| KOG1036|consensus | 323 | 99.98 | ||
| KOG1408|consensus | 1080 | 99.98 | ||
| KOG0772|consensus | 641 | 99.98 | ||
| PTZ00420 | 568 | coronin; Provisional | 99.97 | |
| KOG0643|consensus | 327 | 99.97 | ||
| KOG0283|consensus | 712 | 99.97 | ||
| KOG0308|consensus | 735 | 99.97 | ||
| KOG0289|consensus | 506 | 99.97 | ||
| KOG0313|consensus | 423 | 99.97 | ||
| KOG0294|consensus | 362 | 99.97 | ||
| KOG1446|consensus | 311 | 99.97 | ||
| KOG0301|consensus | 745 | 99.97 | ||
| KOG0294|consensus | 362 | 99.97 | ||
| PTZ00420 | 568 | coronin; Provisional | 99.97 | |
| PTZ00421 | 493 | coronin; Provisional | 99.97 | |
| KOG1539|consensus | 910 | 99.97 | ||
| KOG2106|consensus | 626 | 99.97 | ||
| KOG1407|consensus | 313 | 99.97 | ||
| KOG0640|consensus | 430 | 99.97 | ||
| KOG0300|consensus | 481 | 99.97 | ||
| KOG0288|consensus | 459 | 99.96 | ||
| KOG0289|consensus | 506 | 99.96 | ||
| KOG1063|consensus | 764 | 99.96 | ||
| KOG0299|consensus | 479 | 99.96 | ||
| KOG0300|consensus | 481 | 99.96 | ||
| KOG0973|consensus | 942 | 99.96 | ||
| KOG1332|consensus | 299 | 99.96 | ||
| KOG0321|consensus | 720 | 99.96 | ||
| KOG1063|consensus | 764 | 99.96 | ||
| KOG0308|consensus | 735 | 99.96 | ||
| KOG0310|consensus | 487 | 99.96 | ||
| KOG0646|consensus | 476 | 99.96 | ||
| KOG1273|consensus | 405 | 99.96 | ||
| KOG0301|consensus | 745 | 99.96 | ||
| KOG0639|consensus | 705 | 99.96 | ||
| KOG0264|consensus | 422 | 99.96 | ||
| KOG4283|consensus | 397 | 99.95 | ||
| KOG1274|consensus | 933 | 99.95 | ||
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 99.95 | |
| KOG2335|consensus | 358 | 99.95 | ||
| KOG2096|consensus | 420 | 99.95 | ||
| KOG0264|consensus | 422 | 99.95 | ||
| KOG2055|consensus | 514 | 99.95 | ||
| KOG0650|consensus | 733 | 99.95 | ||
| KOG1408|consensus | 1080 | 99.95 | ||
| KOG2048|consensus | 691 | 99.95 | ||
| KOG0647|consensus | 347 | 99.95 | ||
| KOG0267|consensus | 825 | 99.95 | ||
| KOG0639|consensus | 705 | 99.95 | ||
| KOG0772|consensus | 641 | 99.95 | ||
| KOG1332|consensus | 299 | 99.95 | ||
| KOG2106|consensus | 626 | 99.94 | ||
| KOG0268|consensus | 433 | 99.94 | ||
| KOG4328|consensus | 498 | 99.94 | ||
| KOG0641|consensus | 350 | 99.94 | ||
| KOG2919|consensus | 406 | 99.94 | ||
| KOG0269|consensus | 839 | 99.94 | ||
| KOG0269|consensus | 839 | 99.94 | ||
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 99.94 | |
| KOG2445|consensus | 361 | 99.94 | ||
| COG0042 | 323 | tRNA-dihydrouridine synthase [Translation, ribosom | 99.94 | |
| KOG1036|consensus | 323 | 99.94 | ||
| KOG2048|consensus | 691 | 99.94 | ||
| KOG1034|consensus | 385 | 99.94 | ||
| KOG0321|consensus | 720 | 99.93 | ||
| KOG2096|consensus | 420 | 99.93 | ||
| KOG1274|consensus | 933 | 99.93 | ||
| KOG0267|consensus | 825 | 99.93 | ||
| KOG1445|consensus | 1012 | 99.93 | ||
| KOG0646|consensus | 476 | 99.93 | ||
| KOG2445|consensus | 361 | 99.93 | ||
| KOG4283|consensus | 397 | 99.93 | ||
| TIGR00742 | 318 | yjbN tRNA dihydrouridine synthase A. Members of th | 99.92 | |
| PF01207 | 309 | Dus: Dihydrouridine synthase (Dus); InterPro: IPR0 | 99.92 | |
| KOG1009|consensus | 434 | 99.92 | ||
| KOG0307|consensus | 1049 | 99.91 | ||
| KOG0270|consensus | 463 | 99.91 | ||
| PRK10550 | 312 | tRNA-dihydrouridine synthase C; Provisional | 99.91 | |
| KOG1273|consensus | 405 | 99.91 | ||
| KOG2055|consensus | 514 | 99.91 | ||
| KOG4378|consensus | 673 | 99.91 | ||
| PRK10415 | 321 | tRNA-dihydrouridine synthase B; Provisional | 99.91 | |
| KOG4227|consensus | 609 | 99.9 | ||
| KOG0322|consensus | 323 | 99.9 | ||
| KOG1538|consensus | 1081 | 99.9 | ||
| PRK11815 | 333 | tRNA-dihydrouridine synthase A; Provisional | 99.9 | |
| KOG4378|consensus | 673 | 99.89 | ||
| KOG0302|consensus | 440 | 99.89 | ||
| KOG0642|consensus | 577 | 99.89 | ||
| KOG0302|consensus | 440 | 99.89 | ||
| KOG0644|consensus | 1113 | 99.89 | ||
| KOG1188|consensus | 376 | 99.89 | ||
| KOG0270|consensus | 463 | 99.89 | ||
| KOG1445|consensus | 1012 | 99.89 | ||
| KOG4328|consensus | 498 | 99.89 | ||
| KOG1310|consensus | 758 | 99.88 | ||
| KOG1334|consensus | 559 | 99.88 | ||
| KOG1009|consensus | 434 | 99.88 | ||
| TIGR00737 | 319 | nifR3_yhdG putative TIM-barrel protein, nifR3 fami | 99.87 | |
| KOG0642|consensus | 577 | 99.87 | ||
| COG2319 | 466 | FOG: WD40 repeat [General function prediction only | 99.86 | |
| KOG1963|consensus | 792 | 99.86 | ||
| KOG2333|consensus | 614 | 99.86 | ||
| KOG0650|consensus | 733 | 99.86 | ||
| KOG0303|consensus | 472 | 99.85 | ||
| KOG0307|consensus | 1049 | 99.85 | ||
| KOG1587|consensus | 555 | 99.85 | ||
| KOG1034|consensus | 385 | 99.85 | ||
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 99.85 | |
| COG2319 | 466 | FOG: WD40 repeat [General function prediction only | 99.85 | |
| KOG0322|consensus | 323 | 99.85 | ||
| KOG1007|consensus | 370 | 99.83 | ||
| KOG0303|consensus | 472 | 99.83 | ||
| KOG1188|consensus | 376 | 99.83 | ||
| KOG1538|consensus | 1081 | 99.83 | ||
| cd02801 | 231 | DUS_like_FMN Dihydrouridine synthase-like (DUS-lik | 99.83 | |
| KOG2110|consensus | 391 | 99.82 | ||
| KOG0290|consensus | 364 | 99.82 | ||
| KOG2919|consensus | 406 | 99.82 | ||
| KOG0649|consensus | 325 | 99.82 | ||
| KOG1007|consensus | 370 | 99.81 | ||
| KOG1517|consensus | 1387 | 99.8 | ||
| KOG4497|consensus | 447 | 99.8 | ||
| KOG1523|consensus | 361 | 99.8 | ||
| KOG0771|consensus | 398 | 99.8 | ||
| KOG1240|consensus | 1431 | 99.79 | ||
| KOG1587|consensus | 555 | 99.79 | ||
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 99.78 | |
| KOG0649|consensus | 325 | 99.78 | ||
| KOG1524|consensus | 737 | 99.78 | ||
| KOG1523|consensus | 361 | 99.77 | ||
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 99.77 | |
| KOG1963|consensus | 792 | 99.77 | ||
| KOG4227|consensus | 609 | 99.77 | ||
| KOG0644|consensus | 1113 | 99.76 | ||
| KOG1240|consensus | 1431 | 99.76 | ||
| KOG0771|consensus | 398 | 99.75 | ||
| KOG2394|consensus | 636 | 99.75 | ||
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 99.74 | |
| KOG0290|consensus | 364 | 99.74 | ||
| KOG2110|consensus | 391 | 99.74 | ||
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 99.72 | |
| KOG1310|consensus | 758 | 99.72 | ||
| KOG1517|consensus | 1387 | 99.71 | ||
| KOG1354|consensus | 433 | 99.71 | ||
| KOG2111|consensus | 346 | 99.7 | ||
| KOG1272|consensus | 545 | 99.7 | ||
| KOG2315|consensus | 566 | 99.69 | ||
| KOG2321|consensus | 703 | 99.69 | ||
| KOG1272|consensus | 545 | 99.69 | ||
| KOG1524|consensus | 737 | 99.68 | ||
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 99.67 | |
| KOG2334|consensus | 477 | 99.67 | ||
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 99.66 | |
| cd02911 | 233 | arch_FMN Archeal FMN-binding domain. This family o | 99.65 | |
| KOG2111|consensus | 346 | 99.65 | ||
| KOG2139|consensus | 445 | 99.63 | ||
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 99.63 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 99.63 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 99.63 | |
| KOG4497|consensus | 447 | 99.62 | ||
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 99.62 | |
| KOG3881|consensus | 412 | 99.61 | ||
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 99.6 | |
| KOG3881|consensus | 412 | 99.6 | ||
| KOG1354|consensus | 433 | 99.6 | ||
| KOG2394|consensus | 636 | 99.59 | ||
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 99.58 | |
| KOG1334|consensus | 559 | 99.57 | ||
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 99.57 | |
| KOG0974|consensus | 967 | 99.55 | ||
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 99.53 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 99.53 | |
| KOG2315|consensus | 566 | 99.53 | ||
| KOG2321|consensus | 703 | 99.53 | ||
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 99.53 | |
| KOG2139|consensus | 445 | 99.51 | ||
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 99.51 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 99.49 | |
| KOG1409|consensus | 404 | 99.49 | ||
| COG5354 | 561 | Uncharacterized protein, contains Trp-Asp (WD) rep | 99.48 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 99.48 | |
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 99.47 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 99.47 | |
| KOG2041|consensus | 1189 | 99.47 | ||
| KOG2314|consensus | 698 | 99.46 | ||
| KOG4547|consensus | 541 | 99.45 | ||
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 99.45 | |
| KOG0974|consensus | 967 | 99.45 | ||
| KOG0280|consensus | 339 | 99.44 | ||
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 99.43 | |
| KOG1064|consensus | 2439 | 99.42 | ||
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 99.41 | |
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 99.4 | |
| KOG0280|consensus | 339 | 99.39 | ||
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 99.38 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 99.38 | |
| KOG1912|consensus | 1062 | 99.36 | ||
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 99.36 | |
| KOG4190|consensus | 1034 | 99.35 | ||
| KOG1409|consensus | 404 | 99.34 | ||
| KOG1064|consensus | 2439 | 99.31 | ||
| COG5170 | 460 | CDC55 Serine/threonine protein phosphatase 2A, reg | 99.3 | |
| KOG4547|consensus | 541 | 99.3 | ||
| COG5170 | 460 | CDC55 Serine/threonine protein phosphatase 2A, reg | 99.28 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 99.28 | |
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 99.27 | |
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 99.24 | |
| KOG0309|consensus | 1081 | 99.21 | ||
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 99.21 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 99.2 | |
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 99.19 | |
| KOG4190|consensus | 1034 | 99.18 | ||
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 99.17 | |
| KOG0882|consensus | 558 | 99.16 | ||
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 99.15 | |
| KOG4532|consensus | 344 | 99.15 | ||
| KOG1832|consensus | 1516 | 99.13 | ||
| KOG0309|consensus | 1081 | 99.13 | ||
| KOG2041|consensus | 1189 | 99.12 | ||
| COG5354 | 561 | Uncharacterized protein, contains Trp-Asp (WD) rep | 99.12 | |
| KOG1912|consensus | 1062 | 99.1 | ||
| PF15492 | 282 | Nbas_N: Neuroblastoma-amplified sequence, N termin | 99.07 | |
| KOG4532|consensus | 344 | 99.06 | ||
| KOG3914|consensus | 390 | 99.06 | ||
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 99.04 | |
| PF15492 | 282 | Nbas_N: Neuroblastoma-amplified sequence, N termin | 99.01 | |
| KOG2314|consensus | 698 | 98.99 | ||
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 98.97 | |
| PF04762 | 928 | IKI3: IKI3 family; InterPro: IPR006849 Members of | 98.97 | |
| TIGR01037 | 300 | pyrD_sub1_fam dihydroorotate dehydrogenase (subfam | 98.96 | |
| KOG1832|consensus | 1516 | 98.95 | ||
| PF04762 | 928 | IKI3: IKI3 family; InterPro: IPR006849 Members of | 98.91 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 98.91 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 98.9 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 98.9 | |
| KOG4714|consensus | 319 | 98.86 | ||
| PF00400 | 39 | WD40: WD domain, G-beta repeat; InterPro: IPR01978 | 98.85 | |
| KOG4649|consensus | 354 | 98.84 | ||
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 98.84 | |
| KOG2695|consensus | 425 | 98.83 | ||
| KOG4714|consensus | 319 | 98.81 | ||
| KOG1275|consensus | 1118 | 98.8 | ||
| KOG3914|consensus | 390 | 98.8 | ||
| KOG1645|consensus | 463 | 98.78 | ||
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 98.75 | |
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 98.75 | |
| PF00400 | 39 | WD40: WD domain, G-beta repeat; InterPro: IPR01978 | 98.74 | |
| KOG0882|consensus | 558 | 98.7 | ||
| KOG2695|consensus | 425 | 98.69 | ||
| KOG2066|consensus | 846 | 98.67 | ||
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 98.66 | |
| KOG3617|consensus | 1416 | 98.64 | ||
| TIGR00736 | 231 | nifR3_rel_arch TIM-barrel protein, putative. Membe | 98.61 | |
| KOG2114|consensus | 933 | 98.55 | ||
| cd00216 | 488 | PQQ_DH Dehydrogenases with pyrrolo-quinoline quino | 98.54 | |
| KOG1645|consensus | 463 | 98.53 | ||
| PF06433 | 342 | Me-amine-dh_H: Methylamine dehydrogenase heavy cha | 98.52 | |
| KOG4649|consensus | 354 | 98.49 | ||
| cd00216 | 488 | PQQ_DH Dehydrogenases with pyrrolo-quinoline quino | 98.49 | |
| PF14583 | 386 | Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C | 98.47 | |
| KOG3621|consensus | 726 | 98.46 | ||
| PF00930 | 353 | DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin | 98.46 | |
| PF06433 | 342 | Me-amine-dh_H: Methylamine dehydrogenase heavy cha | 98.43 | |
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 98.39 | |
| KOG1920|consensus | 1265 | 98.38 | ||
| KOG1275|consensus | 1118 | 98.32 | ||
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 98.32 | |
| KOG1920|consensus | 1265 | 98.28 | ||
| KOG2114|consensus | 933 | 98.27 | ||
| PF08596 | 395 | Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; | 98.25 | |
| TIGR03075 | 527 | PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan | 98.24 | |
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 98.22 | |
| KOG2066|consensus | 846 | 98.2 | ||
| PF08596 | 395 | Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; | 98.2 | |
| PF11768 | 545 | DUF3312: Protein of unknown function (DUF3312); In | 98.2 | |
| TIGR01304 | 369 | IMP_DH_rel_2 IMP dehydrogenase family protein. Thi | 98.16 | |
| KOG1897|consensus | 1096 | 98.12 | ||
| cd04740 | 296 | DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) c | 98.1 | |
| PF11768 | 545 | DUF3312: Protein of unknown function (DUF3312); In | 98.1 | |
| PF06977 | 248 | SdiA-regulated: SdiA-regulated; InterPro: IPR00972 | 98.1 | |
| PF06977 | 248 | SdiA-regulated: SdiA-regulated; InterPro: IPR00972 | 98.09 | |
| KOG1008|consensus | 783 | 98.06 | ||
| TIGR03075 | 527 | PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan | 98.05 | |
| PF14655 | 415 | RAB3GAP2_N: Rab3 GTPase-activating protein regulat | 97.97 | |
| KOG3617|consensus | 1416 | 97.97 | ||
| KOG1008|consensus | 783 | 97.91 | ||
| PF03178 | 321 | CPSF_A: CPSF A subunit region; InterPro: IPR004871 | 97.84 | |
| PF04841 | 410 | Vps16_N: Vps16, N-terminal region; InterPro: IPR00 | 97.83 | |
| PF14783 | 111 | BBS2_Mid: Ciliary BBSome complex subunit 2, middle | 97.82 | |
| KOG4640|consensus | 665 | 97.79 | ||
| cd02940 | 299 | DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FM | 97.78 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 97.77 | |
| PF04841 | 410 | Vps16_N: Vps16, N-terminal region; InterPro: IPR00 | 97.77 | |
| COG3391 | 381 | Uncharacterized conserved protein [Function unknow | 97.74 | |
| KOG3621|consensus | 726 | 97.72 | ||
| PF00780 | 275 | CNH: CNH domain; InterPro: IPR001180 Based on sequ | 97.72 | |
| PF00930 | 353 | DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin | 97.72 | |
| smart00320 | 40 | WD40 WD40 repeats. Note that these repeats are per | 97.69 | |
| PF03178 | 321 | CPSF_A: CPSF A subunit region; InterPro: IPR004871 | 97.69 | |
| cd02809 | 299 | alpha_hydroxyacid_oxid_FMN Family of homologous FM | 97.68 | |
| PF02897 | 414 | Peptidase_S9_N: Prolyl oligopeptidase, N-terminal | 97.68 | |
| KOG2444|consensus | 238 | 97.66 | ||
| PF00780 | 275 | CNH: CNH domain; InterPro: IPR001180 Based on sequ | 97.64 | |
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 97.61 | |
| PF14583 | 386 | Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C | 97.59 | |
| PRK13616 | 591 | lipoprotein LpqB; Provisional | 97.58 | |
| smart00320 | 40 | WD40 WD40 repeats. Note that these repeats are per | 97.54 | |
| PF08553 | 794 | VID27: VID27 cytoplasmic protein; InterPro: IPR013 | 97.53 | |
| COG3386 | 307 | Gluconolactonase [Carbohydrate transport and metab | 97.52 | |
| KOG4640|consensus | 665 | 97.52 | ||
| PF08553 | 794 | VID27: VID27 cytoplasmic protein; InterPro: IPR013 | 97.51 | |
| COG3391 | 381 | Uncharacterized conserved protein [Function unknow | 97.5 | |
| PHA02713 | 557 | hypothetical protein; Provisional | 97.46 | |
| KOG2079|consensus | 1206 | 97.44 | ||
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 97.43 | |
| KOG4441|consensus | 571 | 97.41 | ||
| COG3490 | 366 | Uncharacterized protein conserved in bacteria [Fun | 97.38 | |
| KOG2395|consensus | 644 | 97.3 | ||
| PF14783 | 111 | BBS2_Mid: Ciliary BBSome complex subunit 2, middle | 97.29 | |
| PF05694 | 461 | SBP56: 56kDa selenium binding protein (SBP56); Int | 97.29 | |
| KOG4441|consensus | 571 | 97.21 | ||
| KOG1897|consensus | 1096 | 97.2 | ||
| PRK13616 | 591 | lipoprotein LpqB; Provisional | 97.19 | |
| PRK07259 | 301 | dihydroorotate dehydrogenase 1B; Reviewed | 97.18 | |
| PHA02713 | 557 | hypothetical protein; Provisional | 97.17 | |
| cd02810 | 289 | DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) | 97.14 | |
| PF02897 | 414 | Peptidase_S9_N: Prolyl oligopeptidase, N-terminal | 97.12 | |
| COG3386 | 307 | Gluconolactonase [Carbohydrate transport and metab | 97.03 | |
| cd04730 | 236 | NPD_like 2-Nitropropane dioxygenase (NPD), one of | 97.03 | |
| PF07995 | 331 | GSDH: Glucose / Sorbosone dehydrogenase; InterPro: | 97.0 | |
| COG3204 | 316 | Uncharacterized protein conserved in bacteria [Fun | 96.98 | |
| KOG2444|consensus | 238 | 96.92 | ||
| PF05694 | 461 | SBP56: 56kDa selenium binding protein (SBP56); Int | 96.88 | |
| TIGR03074 | 764 | PQQ_membr_DH membrane-bound PQQ-dependent dehydrog | 96.86 | |
| COG3490 | 366 | Uncharacterized protein conserved in bacteria [Fun | 96.85 | |
| PRK08318 | 420 | dihydropyrimidine dehydrogenase subunit B; Validat | 96.84 | |
| PF05096 | 264 | Glu_cyclase_2: Glutamine cyclotransferase; InterPr | 96.75 | |
| KOG2079|consensus | 1206 | 96.74 | ||
| COG3204 | 316 | Uncharacterized protein conserved in bacteria [Fun | 96.74 | |
| PF12234 | 631 | Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0 | 96.68 | |
| PRK10115 | 686 | protease 2; Provisional | 96.6 | |
| PF14870 | 302 | PSII_BNR: Photosynthesis system II assembly factor | 96.58 | |
| PF12894 | 47 | Apc4_WD40: Anaphase-promoting complex subunit 4 WD | 96.47 | |
| PHA03098 | 534 | kelch-like protein; Provisional | 96.47 | |
| PF12894 | 47 | Apc4_WD40: Anaphase-promoting complex subunit 4 WD | 96.42 | |
| KOG2280|consensus | 829 | 96.25 | ||
| KOG2395|consensus | 644 | 96.2 | ||
| PHA02790 | 480 | Kelch-like protein; Provisional | 96.17 | |
| PHA03098 | 534 | kelch-like protein; Provisional | 96.17 | |
| cd04741 | 294 | DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) c | 96.12 | |
| PF10168 | 717 | Nup88: Nuclear pore component; InterPro: IPR019321 | 95.91 | |
| COG5276 | 370 | Uncharacterized conserved protein [Function unknow | 95.77 | |
| PF05096 | 264 | Glu_cyclase_2: Glutamine cyclotransferase; InterPr | 95.73 | |
| TIGR03074 | 764 | PQQ_membr_DH membrane-bound PQQ-dependent dehydrog | 95.48 | |
| PRK05437 | 352 | isopentenyl pyrophosphate isomerase; Provisional | 95.43 | |
| PF15390 | 671 | DUF4613: Domain of unknown function (DUF4613) | 95.23 | |
| PHA02790 | 480 | Kelch-like protein; Provisional | 95.09 | |
| PF14655 | 415 | RAB3GAP2_N: Rab3 GTPase-activating protein regulat | 95.04 | |
| KOG4499|consensus | 310 | 95.02 | ||
| KOG1916|consensus | 1283 | 94.91 | ||
| TIGR02151 | 333 | IPP_isom_2 isopentenyl-diphosphate delta-isomerase | 94.9 | |
| PF10647 | 253 | Gmad1: Lipoprotein LpqB beta-propeller domain; Int | 94.79 | |
| cd04734 | 343 | OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN | 94.76 | |
| PRK08649 | 368 | inosine 5-monophosphate dehydrogenase; Validated | 94.73 | |
| TIGR03118 | 336 | PEPCTERM_chp_1 conserved hypothetical protein TIGR | 94.72 | |
| PF12234 | 631 | Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0 | 94.62 | |
| KOG3630|consensus | 1405 | 94.5 | ||
| PRK13684 | 334 | Ycf48-like protein; Provisional | 94.31 | |
| PF10647 | 253 | Gmad1: Lipoprotein LpqB beta-propeller domain; Int | 94.27 | |
| PF10313 | 43 | DUF2415: Uncharacterised protein domain (DUF2415); | 94.24 | |
| cd00381 | 325 | IMPDH IMPDH: The catalytic domain of the inosine m | 94.17 | |
| cd04739 | 325 | DHOD_like Dihydroorotate dehydrogenase (DHOD) like | 94.08 | |
| COG5167 | 776 | VID27 Protein involved in vacuole import and degra | 94.01 | |
| PRK10115 | 686 | protease 2; Provisional | 93.96 | |
| KOG1916|consensus | 1283 | 93.85 | ||
| PF10313 | 43 | DUF2415: Uncharacterised protein domain (DUF2415); | 93.83 | |
| cd04738 | 327 | DHOD_2_like Dihydroorotate dehydrogenase (DHOD) cl | 93.79 | |
| TIGR02604 | 367 | Piru_Ver_Nterm putative membrane-bound dehydrogena | 93.68 | |
| KOG2247|consensus | 615 | 93.62 | ||
| PF15390 | 671 | DUF4613: Domain of unknown function (DUF4613) | 93.42 | |
| PF07569 | 219 | Hira: TUP1-like enhancer of split; InterPro: IPR01 | 93.38 | |
| KOG4499|consensus | 310 | 93.31 | ||
| KOG3630|consensus | 1405 | 93.11 | ||
| PF14781 | 136 | BBS2_N: Ciliary BBSome complex subunit 2, N-termin | 92.98 | |
| PF08728 | 717 | CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans | 92.8 | |
| KOG2377|consensus | 657 | 92.55 | ||
| PF07569 | 219 | Hira: TUP1-like enhancer of split; InterPro: IPR01 | 92.21 | |
| PLN00033 | 398 | photosystem II stability/assembly factor; Provisio | 92.05 | |
| PRK02506 | 310 | dihydroorotate dehydrogenase 1A; Reviewed | 91.99 | |
| KOG2377|consensus | 657 | 91.8 | ||
| TIGR02604 | 367 | Piru_Ver_Nterm putative membrane-bound dehydrogena | 91.78 | |
| KOG2280|consensus | 829 | 91.69 | ||
| KOG1983|consensus | 993 | 91.53 | ||
| COG5276 | 370 | Uncharacterized conserved protein [Function unknow | 91.22 | |
| PF14761 | 215 | HPS3_N: Hermansky-Pudlak syndrome 3 | 91.09 | |
| KOG3616|consensus | 1636 | 91.0 | ||
| COG3823 | 262 | Glutamine cyclotransferase [Posttranslational modi | 90.77 | |
| cd04747 | 361 | OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN | 90.61 | |
| TIGR03118 | 336 | PEPCTERM_chp_1 conserved hypothetical protein TIGR | 90.55 | |
| PRK13523 | 337 | NADPH dehydrogenase NamA; Provisional | 90.54 | |
| KOG4659|consensus | 1899 | 90.42 | ||
| PF08728 | 717 | CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans | 90.04 | |
| cd02932 | 336 | OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN | 90.01 | |
| PF07995 | 331 | GSDH: Glucose / Sorbosone dehydrogenase; InterPro: | 89.95 | |
| TIGR02276 | 42 | beta_rpt_yvtn 40-residue YVTN family beta-propelle | 89.87 | |
| PF10168 | 717 | Nup88: Nuclear pore component; InterPro: IPR019321 | 89.71 | |
| COG3823 | 262 | Glutamine cyclotransferase [Posttranslational modi | 89.09 | |
| PF12657 | 173 | TFIIIC_delta: Transcription factor IIIC subunit de | 88.8 | |
| KOG1983|consensus | 993 | 88.63 | ||
| cd02929 | 370 | TMADH_HD_FMN Trimethylamine dehydrogenase (TMADH) | 88.5 | |
| KOG2247|consensus | 615 | 88.41 | ||
| PF02333 | 381 | Phytase: Phytase; InterPro: IPR003431 Phytase (3.1 | 88.27 | |
| PF14727 | 418 | PHTB1_N: PTHB1 N-terminus | 88.16 | |
| cd04733 | 338 | OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN | 87.93 | |
| cd02930 | 353 | DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-bindin | 87.83 | |
| PF07676 | 39 | PD40: WD40-like Beta Propeller Repeat; InterPro: I | 87.65 | |
| TIGR02276 | 42 | beta_rpt_yvtn 40-residue YVTN family beta-propelle | 87.57 | |
| PF11715 | 547 | Nup160: Nucleoporin Nup120/160; InterPro: IPR02171 | 87.56 | |
| COG1520 | 370 | FOG: WD40-like repeat [Function unknown] | 87.55 | |
| KOG1900|consensus | 1311 | 87.53 | ||
| PF07676 | 39 | PD40: WD40-like Beta Propeller Repeat; InterPro: I | 87.4 | |
| PLN02153 | 341 | epithiospecifier protein | 87.34 |
| >KOG0271|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-54 Score=372.88 Aligned_cols=346 Identities=20% Similarity=0.310 Sum_probs=273.2
Q ss_pred ceeccccchhhhhhcccccceeeeecccccc---eeeeeecCeEEEEeCCCCCEEEEeeCCCcEEEEcCCCCeeE-EEee
Q psy18231 128 LLFSLPRTITRILYELPKEWSIRVYRPLTVN---RELFVLSGLMHTRFPVDGSYCLTCGSDKKIKLWNPYRNLLL-KTYG 203 (540)
Q Consensus 128 ~~~s~~~~~~~~~~~~~~~~~i~~~~~~~~~---~~~~h~~~v~~v~~spdg~~lat~~~dg~i~iwd~~~~~~~-~~~~ 203 (540)
..|+|. ...+.+++.|.++|+|++.+.. ...+|...|.|++|+|||+.||+|+.||+|++||.++|+++ ..+.
T Consensus 121 ~~fsp~---g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~~g~~l~ 197 (480)
T KOG0271|consen 121 VQFSPT---GSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQIGRALR 197 (480)
T ss_pred EEecCC---CceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEecCCCCCccccccc
Confidence 345553 4566789999999999998865 34579999999999999999999999999999999998765 5689
Q ss_pred cCCcceeEEEEee-----CCCeEEEeeCCCeEEEEEcCCCceeEeccccCCceeEEEECCCCCEEEEecCCCcEEEEEec
Q psy18231 204 GHAHEVNDATAAC-----DSSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVK 278 (540)
Q Consensus 204 ~h~~~v~~l~~sp-----~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~ 278 (540)
+|+..|++++|.| ..++||+++.||+|+|||+..+.++..+.+|+.+|+|+.|--+ .++++||.|++|++|+..
T Consensus 198 gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~-gliySgS~DrtIkvw~a~ 276 (480)
T KOG0271|consen 198 GHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGE-GLIYSGSQDRTIKVWRAL 276 (480)
T ss_pred CcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcCC-ceEEecCCCceEEEEEcc
Confidence 9999999999987 6678999999999999999999999999999999999999755 489999999999999998
Q ss_pred CCCCCCcchhhhhHhhhhcCCceeEEEEeecccccccccCceeeEEEeeeecccccceeeeeeccceeEEEeecccceec
Q psy18231 279 SRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQI 358 (540)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (540)
.+.. .+.++++...++.+ +.+.+..+ +...+......
T Consensus 277 dG~~--------~r~lkGHahwvN~l---alsTdy~L--------------------------------Rtgaf~~t~~~ 313 (480)
T KOG0271|consen 277 DGKL--------CRELKGHAHWVNHL---ALSTDYVL--------------------------------RTGAFDHTGRK 313 (480)
T ss_pred chhH--------HHhhcccchheeee---eccchhhh--------------------------------hcccccccccc
Confidence 8762 11222222222221 11111111 11111000000
Q ss_pred ccccccccccchhhhhhcccccEEEEEecCCeeEeeeCCCeEEEEeCCCCc-eEEeeeCC--ceEEEEEecCCcEEEeec
Q psy18231 359 GDVTPISIHNSCFQALKEARDSITSVHVSDHEILTASLDCRIRRYDIRTGN-LVTDYVGE--PIVDACFTRDCQCILTCS 435 (540)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~--~i~~~~~sp~~~~l~~~~ 435 (540)
.. +.. +..+.-..... ..+.-++..+++|+.|.++.+|+....+ ++..+.+| -|+.+.||||++++|+++
T Consensus 314 ~~----~~s-e~~~~Al~rY~--~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaS 386 (480)
T KOG0271|consen 314 PK----SFS-EEQKKALERYE--AVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASAS 386 (480)
T ss_pred CC----ChH-HHHHHHHHHHH--HhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEee
Confidence 00 000 00000000001 1112234789999999999999987544 67777664 699999999999999999
Q ss_pred CCCeEEEEeccccchhhhhccCcCCcceEEEEecCCCCeEEEeeCCCcEEEEEecCCcceeEEEecccceeeeEEEEcCC
Q psy18231 436 TDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPT 515 (540)
Q Consensus 436 ~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d 515 (540)
.|..|++||.++|+.+.+|++|-..|+.+ +|+.|.++|++||.|.++++||+++.+....+. +|...|.++.|+||
T Consensus 387 FDkSVkLW~g~tGk~lasfRGHv~~VYqv--awsaDsRLlVS~SkDsTLKvw~V~tkKl~~DLp--Gh~DEVf~vDwspD 462 (480)
T KOG0271|consen 387 FDKSVKLWDGRTGKFLASFRGHVAAVYQV--AWSADSRLLVSGSKDSTLKVWDVRTKKLKQDLP--GHADEVFAVDWSPD 462 (480)
T ss_pred cccceeeeeCCCcchhhhhhhccceeEEE--EeccCccEEEEcCCCceEEEEEeeeeeecccCC--CCCceEEEEEecCC
Confidence 99999999999999999999999999988 899999999999999999999999999999888 99999999999999
Q ss_pred CcEEEeec-CCeeEEEE
Q psy18231 516 RKHIMSAC-GNNVKLWT 531 (540)
Q Consensus 516 ~~~l~s~~-d~~i~iw~ 531 (540)
|+.+++|+ |..+++|.
T Consensus 463 G~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 463 GQRVASGGKDKVLRLWR 479 (480)
T ss_pred CceeecCCCceEEEeec
Confidence 99999999 99999995
|
|
| >KOG0271|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-53 Score=365.02 Aligned_cols=284 Identities=22% Similarity=0.322 Sum_probs=261.4
Q ss_pred eeeeecCeEEEEeCCCCCEEEEeeCCCcEEEEcCCCCeeEEEeecCCcceeEEEEeeCCCeEEEeeCCCeEEEEEcCCCc
Q psy18231 160 ELFVLSGLMHTRFPVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQ 239 (540)
Q Consensus 160 ~~~h~~~v~~v~~spdg~~lat~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~ 239 (540)
..+|.++|.|++|+|+|++|++|+.|.++|+||+.+..++++.++|...|.|++|+|||+.||+|+.||+|++||.++|+
T Consensus 111 ~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~ 190 (480)
T KOG0271|consen 111 IAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQ 190 (480)
T ss_pred cCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEecCCCCC
Confidence 45799999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred ee-EeccccCCceeEEEECC-----CCCEEEEecCCCcEEEEEecCCCCCCcchhhhhHhhhhcCCceeEEEEeeccccc
Q psy18231 240 PV-RRWREHASKVTCVKFNE-----DSSVVISGSQDNTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKN 313 (540)
Q Consensus 240 ~~-~~~~~h~~~v~~~~~~~-----~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (540)
++ ..+.+|...|++++|.| ..++|++++.||+++|||+..+.
T Consensus 191 ~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~-------------------------------- 238 (480)
T KOG0271|consen 191 QIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGT-------------------------------- 238 (480)
T ss_pred cccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCce--------------------------------
Confidence 65 46899999999999976 56799999999999999998765
Q ss_pred ccccCceeeEEEeeeecccccceeeeeeccceeEEEeecccceecccccccccccchhhhhhcccccEEEEEecC-CeeE
Q psy18231 314 HLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEARDSITSVHVSD-HEIL 392 (540)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~-~~l~ 392 (540)
++..+.+|..+|+|+.|-. .++.
T Consensus 239 --------------------------------------------------------~~~~lsgHT~~VTCvrwGG~gliy 262 (480)
T KOG0271|consen 239 --------------------------------------------------------CVRTLSGHTASVTCVRWGGEGLIY 262 (480)
T ss_pred --------------------------------------------------------EEEEeccCccceEEEEEcCCceEE
Confidence 2336789999999999997 9999
Q ss_pred eeeCCCeEEEEeCCCCceEEeeeC--CceEEEEEe-----------cCCc-------------------------EEEee
Q psy18231 393 TASLDCRIRRYDIRTGNLVTDYVG--EPIVDACFT-----------RDCQ-------------------------CILTC 434 (540)
Q Consensus 393 ~~~~dg~i~iwd~~~~~~~~~~~~--~~i~~~~~s-----------p~~~-------------------------~l~~~ 434 (540)
+|+.|++|++|+...|++...+.+ +.|+.++.+ |.++ .|++|
T Consensus 263 SgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSg 342 (480)
T KOG0271|consen 263 SGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSG 342 (480)
T ss_pred ecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEe
Confidence 999999999999999999998876 578888766 3333 49999
Q ss_pred cCCCeEEEEeccc-cchhhhhccCcCCcceEEEEecCCCCeEEEeeCCCcEEEEEecCCcceeEEEecccceeeeEEEEc
Q psy18231 435 STDECLRLFDKAT-GELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSH 513 (540)
Q Consensus 435 ~~dg~i~i~d~~~-~~~~~~~~~~~~~v~~~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s 513 (540)
+.|.++.+|+-.. .+++..+.+|...|..+ .||||++++|++|.|..|++||-.+|+.+.+++ +|-+.|..++||
T Consensus 343 sDd~tlflW~p~~~kkpi~rmtgHq~lVn~V--~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfR--GHv~~VYqvaws 418 (480)
T KOG0271|consen 343 SDDFTLFLWNPFKSKKPITRMTGHQALVNHV--SFSPDGRYIASASFDKSVKLWDGRTGKFLASFR--GHVAAVYQVAWS 418 (480)
T ss_pred cCCceEEEecccccccchhhhhchhhheeeE--EECCCccEEEEeecccceeeeeCCCcchhhhhh--hccceeEEEEec
Confidence 9999999999754 45899999999999888 899999999999999999999999999999999 999999999999
Q ss_pred CCCcEEEeec-CCeeEEEEcccc
Q psy18231 514 PTRKHIMSAC-GNNVKLWTAEED 535 (540)
Q Consensus 514 ~d~~~l~s~~-d~~i~iw~~~~~ 535 (540)
.|.++|++++ |.++++|++.+.
T Consensus 419 aDsRLlVS~SkDsTLKvw~V~tk 441 (480)
T KOG0271|consen 419 ADSRLLVSGSKDSTLKVWDVRTK 441 (480)
T ss_pred cCccEEEEcCCCceEEEEEeeee
Confidence 9999999999 999999999764
|
|
| >KOG0272|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-51 Score=354.35 Aligned_cols=279 Identities=21% Similarity=0.301 Sum_probs=265.6
Q ss_pred eeeecCeEEEEeCCCCCEEEEeeCCCcEEEEcCCCCeeEEEeecCCcceeEEEEeeC--CCeEEEeeCCCeEEEEEcCCC
Q psy18231 161 LFVLSGLMHTRFPVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACD--SSQIASGASDKSVILWEVTTG 238 (540)
Q Consensus 161 ~~h~~~v~~v~~spdg~~lat~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~--~~~l~s~s~dg~i~iwd~~~~ 238 (540)
.+-+++|..+.||+|++.||||+.+|.++||+..+...+.+|.+|+..|.++.|+|. +..+|||+.||++++|++++.
T Consensus 172 ~gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e 251 (459)
T KOG0272|consen 172 VGDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQE 251 (459)
T ss_pred ccCCCcceeeEeecCCCeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCC
Confidence 456789999999999999999999999999999999999999999999999999996 668999999999999999999
Q ss_pred ceeEeccccCCceeEEEECCCCCEEEEecCCCcEEEEEecCCCCCCcchhhhhHhhhhcCCceeEEEEeecccccccccC
Q psy18231 239 QPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHLSNG 318 (540)
Q Consensus 239 ~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (540)
.++..+.+|...|..++|+|+|++|+|++.|.+-++||++++..
T Consensus 252 ~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~E------------------------------------ 295 (459)
T KOG0272|consen 252 TPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSE------------------------------------ 295 (459)
T ss_pred cchhhhhcchhhheeeeecCCCceeeecccccchhhcccccchh------------------------------------
Confidence 99999999999999999999999999999999999999999873
Q ss_pred ceeeEEEeeeecccccceeeeeeccceeEEEeecccceecccccccccccchhhhhhcccccEEEEEecC--CeeEeeeC
Q psy18231 319 LLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEARDSITSVHVSD--HEILTASL 396 (540)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~--~~l~~~~~ 396 (540)
+....+|...|.+++|++ .++++|+.
T Consensus 296 ----------------------------------------------------lL~QEGHs~~v~~iaf~~DGSL~~tGGl 323 (459)
T KOG0272|consen 296 ----------------------------------------------------LLLQEGHSKGVFSIAFQPDGSLAATGGL 323 (459)
T ss_pred ----------------------------------------------------hHhhcccccccceeEecCCCceeeccCc
Confidence 235679999999999998 88999999
Q ss_pred CCeEEEEeCCCCceEEeeeC--CceEEEEEecCCcEEEeecCCCeEEEEeccccchhhhhccCcCCcceEEEEecC-CCC
Q psy18231 397 DCRIRRYDIRTGNLVTDYVG--EPIVDACFTRDCQCILTCSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLDS-KDS 473 (540)
Q Consensus 397 dg~i~iwd~~~~~~~~~~~~--~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~s~-~~~ 473 (540)
|..-+|||+++++++..+.+ .+|.+++|+|+|..||+|+.|++++|||++..+.+.++.+|.+-|+.+ .|+| .|.
T Consensus 324 D~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~V--k~~p~~g~ 401 (459)
T KOG0272|consen 324 DSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQV--KYSPQEGY 401 (459)
T ss_pred cchhheeecccCcEEEEecccccceeeEeECCCceEEeecCCCCcEEEeeecccccceecccccchhhhe--EecccCCe
Confidence 99999999999999999987 489999999999999999999999999999999999999999999988 7888 788
Q ss_pred eEEEeeCCCcEEEEEecCCcceeEEEecccceeeeEEEEcCCCcEEEeec-CCeeEEEE
Q psy18231 474 QIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC-GNNVKLWT 531 (540)
Q Consensus 474 ~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~-d~~i~iw~ 531 (540)
+|+|++.|++++||...+..+++.+. +|.+.|.+++.++|++++++++ |.++++|.
T Consensus 402 fL~TasyD~t~kiWs~~~~~~~ksLa--GHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 402 FLVTASYDNTVKIWSTRTWSPLKSLA--GHEGKVISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred EEEEcccCcceeeecCCCcccchhhc--CCccceEEEEeccCCceEEEeccCceeeecc
Confidence 99999999999999999999999999 9999999999999999999999 99999996
|
|
| >KOG0316|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-46 Score=299.33 Aligned_cols=285 Identities=48% Similarity=0.893 Sum_probs=270.3
Q ss_pred eeeecCeEEEEeCCCCCEEEEeeCCCcEEEEcCCCCeeEEEeecCCcceeEEEEeeCCCeEEEeeCCCeEEEEEcCCCce
Q psy18231 161 LFVLSGLMHTRFPVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQP 240 (540)
Q Consensus 161 ~~h~~~v~~v~~spdg~~lat~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~ 240 (540)
..|+++|..+.|+-||+|.++++.|.+|++||+..+.+++++.+|...|..++.+.|+..+++|+.|..|.+||+++|+.
T Consensus 14 ~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TGkv 93 (307)
T KOG0316|consen 14 DCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNTGKV 93 (307)
T ss_pred cccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEEcccCee
Confidence 46889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEeccccCCceeEEEECCCCCEEEEecCCCcEEEEEecCCCCCCcchhhhhHhhhhcCCceeEEEEeecccccccccCce
Q psy18231 241 VRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHLSNGLL 320 (540)
Q Consensus 241 ~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (540)
++.+.+|.+.|+.+.|+.+...+++|+.|.++++||.++....|++
T Consensus 94 ~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQ---------------------------------- 139 (307)
T KOG0316|consen 94 DRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQ---------------------------------- 139 (307)
T ss_pred eeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccc----------------------------------
Confidence 9999999999999999999999999999999999999998866665
Q ss_pred eeEEEeeeecccccceeeeeeccceeEEEeecccceecccccccccccchhhhhhcccccEEEEEecCCeeEeeeCCCeE
Q psy18231 321 TKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEARDSITSVHVSDHEILTASLDCRI 400 (540)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~dg~i 400 (540)
.+....+.|.++..+...+++|+.||++
T Consensus 140 ----------------------------------------------------ildea~D~V~Si~v~~heIvaGS~DGtv 167 (307)
T KOG0316|consen 140 ----------------------------------------------------ILDEAKDGVSSIDVAEHEIVAGSVDGTV 167 (307)
T ss_pred ----------------------------------------------------hhhhhcCceeEEEecccEEEeeccCCcE
Confidence 6777789999999999999999999999
Q ss_pred EEEeCCCCceEEeeeCCceEEEEEecCCcEEEeecCCCeEEEEeccccchhhhhccCcCCcceEEEEecCCCCeEEEeeC
Q psy18231 401 RRYDIRTGNLVTDYVGEPIVDACFTRDCQCILTCSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSS 480 (540)
Q Consensus 401 ~iwd~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~s~~~~~l~s~s~ 480 (540)
+.||++.|+....+-+++|++++|++|++..++++.|+++++.|-.+|+.+..+++|.+.-+.+.++++.....+++|++
T Consensus 168 RtydiR~G~l~sDy~g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~l~qsdthV~sgSE 247 (307)
T KOG0316|consen 168 RTYDIRKGTLSSDYFGHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQSDTHVFSGSE 247 (307)
T ss_pred EEEEeecceeehhhcCCcceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccccceeeeeeeecccceeEEeccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcEEEEEecCCcceeEEEeccccee-eeEEEEcCCCcEEEeecCCeeEEEEcc
Q psy18231 481 DGKIYKWQLVDSSQISTLIHSVGKAV-VNSLCSHPTRKHIMSACGNNVKLWTAE 533 (540)
Q Consensus 481 dg~i~iwd~~~~~~~~~~~~~~~~~~-v~~l~~s~d~~~l~s~~d~~i~iw~~~ 533 (540)
||.|++||+.+...+..+. .+... |.++.++|.-..++++.++.+.+|.-+
T Consensus 248 DG~Vy~wdLvd~~~~sk~~--~~~~v~v~dl~~hp~~~~f~~A~~~~~~~~~~~ 299 (307)
T KOG0316|consen 248 DGKVYFWDLVDETQISKLS--VVSTVIVTDLSCHPTMDDFITATGHGDLFWYQE 299 (307)
T ss_pred CceEEEEEeccceeeeeec--cCCceeEEeeecccCccceeEecCCceeceeeh
Confidence 9999999999999999998 67766 899999999988888888888888654
|
|
| >KOG0286|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-44 Score=299.42 Aligned_cols=281 Identities=18% Similarity=0.342 Sum_probs=257.5
Q ss_pred ceeeeeecCeEEEEeCCCCCEEEEeeCCCcEEEEcCCCCeeEEEeecCCcceeEEEEeeCCCeEEEeeCCCeEEEEEcCC
Q psy18231 158 NRELFVLSGLMHTRFPVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTT 237 (540)
Q Consensus 158 ~~~~~h~~~v~~v~~spdg~~lat~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~ 237 (540)
....+|.+.|.++.|++|.++|++++.||.+.|||.-+....+.++-....|..++|+|.|+++|+|+-|+...||++.+
T Consensus 49 r~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~ 128 (343)
T KOG0286|consen 49 RTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPLST 128 (343)
T ss_pred EEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEEEeccc
Confidence 34568999999999999999999999999999999999998998988899999999999999999999999999999986
Q ss_pred C------ceeEeccccCCceeEEEECCCCCEEEEecCCCcEEEEEecCCCCCCcchhhhhHhhhhcCCceeEEEEeeccc
Q psy18231 238 G------QPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKST 311 (540)
Q Consensus 238 ~------~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (540)
. +..+.+.+|.+.+.|+.|.+| .+|+|+|.|.+..+||+++++.
T Consensus 129 ~d~~g~~~v~r~l~gHtgylScC~f~dD-~~ilT~SGD~TCalWDie~g~~----------------------------- 178 (343)
T KOG0286|consen 129 RDAEGNVRVSRELAGHTGYLSCCRFLDD-NHILTGSGDMTCALWDIETGQQ----------------------------- 178 (343)
T ss_pred ccccccceeeeeecCccceeEEEEEcCC-CceEecCCCceEEEEEcccceE-----------------------------
Confidence 5 345568899999999999875 5799999999999999999872
Q ss_pred ccccccCceeeEEEeeeecccccceeeeeeccceeEEEeecccceecccccccccccchhhhhhcccccEEEEEecC---
Q psy18231 312 KNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEARDSITSVHVSD--- 388 (540)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~--- 388 (540)
...+.+|.+.|.+++++|
T Consensus 179 -----------------------------------------------------------~~~f~GH~gDV~slsl~p~~~ 199 (343)
T KOG0286|consen 179 -----------------------------------------------------------TQVFHGHTGDVMSLSLSPSDG 199 (343)
T ss_pred -----------------------------------------------------------EEEecCCcccEEEEecCCCCC
Confidence 226779999999999988
Q ss_pred CeeEeeeCCCeEEEEeCCCCceEEeeeCC--ceEEEEEecCCcEEEeecCCCeEEEEeccccchhhhhccCc--CCcceE
Q psy18231 389 HEILTASLDCRIRRYDIRTGNLVTDYVGE--PIVDACFTRDCQCILTCSTDECLRLFDKATGELLEEYKGHK--SGDFRI 464 (540)
Q Consensus 389 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~--~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~--~~v~~~ 464 (540)
+.+++|+.|+..++||++.+.+++.+.+| .|+++.|.|+|.-+++|+.|++.++||++..+.+..|.... .+|+++
T Consensus 200 ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv 279 (343)
T KOG0286|consen 200 NTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSIICGITSV 279 (343)
T ss_pred CeEEecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCcccCCceeE
Confidence 89999999999999999999999999985 69999999999999999999999999999998888886433 345555
Q ss_pred EEEecCCCCeEEEeeCCCcEEEEEecCCcceeEEEecccceeeeEEEEcCCCcEEEeec-CCeeEEEE
Q psy18231 465 ECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC-GNNVKLWT 531 (540)
Q Consensus 465 ~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~-d~~i~iw~ 531 (540)
+||..|++|++|..|.++.+||.-.++.+..+. +|...|+++..+|||.-+++|+ |.+++||.
T Consensus 280 --~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~--GHeNRvScl~~s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 280 --AFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLA--GHENRVSCLGVSPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred --EEcccccEEEeeecCCceeEeeccccceEEEee--ccCCeeEEEEECCCCcEEEecchhHheeecC
Confidence 899999999999999999999999999999999 9999999999999999999999 99999994
|
|
| >KOG0279|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-43 Score=289.61 Aligned_cols=284 Identities=20% Similarity=0.340 Sum_probs=245.8
Q ss_pred eeeeecCeEEEEeCCC-CCEEEEeeCCCcEEEEcCC-----CCeeEEEeecCCcceeEEEEeeCCCeEEEeeCCCeEEEE
Q psy18231 160 ELFVLSGLMHTRFPVD-GSYCLTCGSDKKIKLWNPY-----RNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILW 233 (540)
Q Consensus 160 ~~~h~~~v~~v~~spd-g~~lat~~~dg~i~iwd~~-----~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~dg~i~iw 233 (540)
..+|.+.|+.++..+. .+.++++++|.++.+|++. .|.+++.++||...|..+..++||++.++++.|+++++|
T Consensus 11 l~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlW 90 (315)
T KOG0279|consen 11 LEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLW 90 (315)
T ss_pred ecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEeccccceEEEE
Confidence 4579999999999986 5678899999999999864 467899999999999999999999999999999999999
Q ss_pred EcCCCceeEeccccCCceeEEEECCCCCEEEEecCCCcEEEEEecCCCCCCcchhhhhHhhhhcCCceeEEEEeeccccc
Q psy18231 234 EVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKN 313 (540)
Q Consensus 234 d~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (540)
|+.+++..+.|.+|...|.+++|++|.+.+++|+.|++|++|++.......+
T Consensus 91 Dl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~ck~t~---------------------------- 142 (315)
T KOG0279|consen 91 DLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVCKYTI---------------------------- 142 (315)
T ss_pred EecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeecccEEEEE----------------------------
Confidence 9999999999999999999999999999999999999999999876541000
Q ss_pred ccccCceeeEEEeeeecccccceeeeeeccceeEEEeecccceecccccccccccchhhhhhcccccEEEEEecC----C
Q psy18231 314 HLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEARDSITSVHVSD----H 389 (540)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~----~ 389 (540)
.-..+.+.|.|+.|+| .
T Consensus 143 -----------------------------------------------------------~~~~~~~WVscvrfsP~~~~p 163 (315)
T KOG0279|consen 143 -----------------------------------------------------------HEDSHREWVSCVRFSPNESNP 163 (315)
T ss_pred -----------------------------------------------------------ecCCCcCcEEEEEEcCCCCCc
Confidence 1112378899999999 4
Q ss_pred eeEeeeCCCeEEEEeCCCCceEEeeeC--CceEEEEEecCCcEEEeecCCCeEEEEeccccchhhhhccCcCCcceEEEE
Q psy18231 390 EILTASLDCRIRRYDIRTGNLVTDYVG--EPIVDACFTRDCQCILTCSTDECLRLFDKATGELLEEYKGHKSGDFRIECC 467 (540)
Q Consensus 390 ~l~~~~~dg~i~iwd~~~~~~~~~~~~--~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~ 467 (540)
.+++++.|+++++||+++.+....+.+ +.++.+++||||.+.++|+.||.+.+||++.++.+..+. |...|.++ +
T Consensus 164 ~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl~-a~~~v~sl--~ 240 (315)
T KOG0279|consen 164 IIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSLE-AFDIVNSL--C 240 (315)
T ss_pred EEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEecc-CCCeEeeE--E
Confidence 799999999999999999999888876 579999999999999999999999999999999977775 56667776 9
Q ss_pred ecCCCCeEEEeeCCCcEEEEEecCCcceeEEEecc-------cceeeeEEEEcCCCcEEEeec-CCeeEEEEccc
Q psy18231 468 LDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSV-------GKAVVNSLCSHPTRKHIMSAC-GNNVKLWTAEE 534 (540)
Q Consensus 468 ~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~-------~~~~v~~l~~s~d~~~l~s~~-d~~i~iw~~~~ 534 (540)
|+|+.-+|+.+.. ..|+|||+.++..+..++... ......+++||+||..|+++. |+.|++|.+..
T Consensus 241 fspnrywL~~at~-~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~irv~qv~~ 314 (315)
T KOG0279|consen 241 FSPNRYWLCAATA-TSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQVAK 314 (315)
T ss_pred ecCCceeEeeccC-CceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeecCCcEEEEEeec
Confidence 9998766666654 459999999998888775321 133467899999999999999 99999999753
|
|
| >KOG0315|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-43 Score=284.06 Aligned_cols=267 Identities=19% Similarity=0.316 Sum_probs=237.5
Q ss_pred CCEEEEeeCCCcEEEEcCCCCeeEEEeecCCcceeEEEEeeCCCeEEEeeCCCeEEEEEcCCCc--eeEeccccCCceeE
Q psy18231 176 GSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQ--PVRRWREHASKVTC 253 (540)
Q Consensus 176 g~~lat~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~--~~~~~~~h~~~v~~ 253 (540)
.-+|+++|.|.+||+|...+|.+..+++...+.|+.+...||++.||+++. ..|++||+++++ ++.++.+|...|.+
T Consensus 10 ~viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~np~Pv~t~e~h~kNVta 88 (311)
T KOG0315|consen 10 PVILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAGN-QHVRLYDLNSNNPNPVATFEGHTKNVTA 88 (311)
T ss_pred ceEEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhccC-CeeEEEEccCCCCCceeEEeccCCceEE
Confidence 347899999999999999999999999988899999999999999999886 679999999875 58889999999999
Q ss_pred EEECCCCCEEEEecCCCcEEEEEecCCCCCCcchhhhhHhhhhcCCceeEEEEeecccccccccCceeeEEEeeeecccc
Q psy18231 254 VKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLN 333 (540)
Q Consensus 254 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (540)
+.|..+|+.+++||+||+++|||++....
T Consensus 89 VgF~~dgrWMyTgseDgt~kIWdlR~~~~--------------------------------------------------- 117 (311)
T KOG0315|consen 89 VGFQCDGRWMYTGSEDGTVKIWDLRSLSC--------------------------------------------------- 117 (311)
T ss_pred EEEeecCeEEEecCCCceEEEEeccCccc---------------------------------------------------
Confidence 99999999999999999999999988541
Q ss_pred cceeeeeeccceeEEEeecccceecccccccccccchhhhhhcccccEEEEEecC--CeeEeeeCCCeEEEEeCCCCceE
Q psy18231 334 GLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEARDSITSVHVSD--HEILTASLDCRIRRYDIRTGNLV 411 (540)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~--~~l~~~~~dg~i~iwd~~~~~~~ 411 (540)
+..-.|..+|+++..+| ..|++|..+|.|++||+....+.
T Consensus 118 --------------------------------------qR~~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~ 159 (311)
T KOG0315|consen 118 --------------------------------------QRNYQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCT 159 (311)
T ss_pred --------------------------------------chhccCCCCcceEEecCCcceEEeecCCCcEEEEEccCCccc
Confidence 13335678999999999 77999999999999999988777
Q ss_pred EeeeC---CceEEEEEecCCcEEEeecCCCeEEEEecccc------chhhhhccCcCCcceEEEEecCCCCeEEEeeCCC
Q psy18231 412 TDYVG---EPIVDACFTRDCQCILTCSTDECLRLFDKATG------ELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDG 482 (540)
Q Consensus 412 ~~~~~---~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~------~~~~~~~~~~~~v~~~~~~~s~~~~~l~s~s~dg 482 (540)
..+.. .+|.++...|||.+++.+...|..++|++... +++.+++.|++-+ +.+-+|||+++||++|.|.
T Consensus 160 ~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~i--l~C~lSPd~k~lat~ssdk 237 (311)
T KOG0315|consen 160 HELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHI--LRCLLSPDVKYLATCSSDK 237 (311)
T ss_pred cccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceE--EEEEECCCCcEEEeecCCc
Confidence 66653 58999999999999999999999999998764 4567888898765 5558999999999999999
Q ss_pred cEEEEEecCC-cceeEEEecccceeeeEEEEcCCCcEEEeec-CCeeEEEEccccc
Q psy18231 483 KIYKWQLVDS-SQISTLIHSVGKAVVNSLCSHPTRKHIMSAC-GNNVKLWTAEEDY 536 (540)
Q Consensus 483 ~i~iwd~~~~-~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~-d~~i~iw~~~~~~ 536 (540)
+++||+.++. +....+. +|...+..++||.||+||++|+ |+.+++|+++.+.
T Consensus 238 tv~iwn~~~~~kle~~l~--gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k 291 (311)
T KOG0315|consen 238 TVKIWNTDDFFKLELVLT--GHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAGK 291 (311)
T ss_pred eEEEEecCCceeeEEEee--cCCceEEeeeeccCccEEEecCCCCceeecccccCc
Confidence 9999999887 4455555 9999999999999999999999 9999999998775
|
|
| >KOG0272|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-44 Score=313.64 Aligned_cols=262 Identities=19% Similarity=0.240 Sum_probs=243.6
Q ss_pred hhhhhcccccceeeeecccccc---eeeeeecCeEEEEeCCC--CCEEEEeeCCCcEEEEcCCCCeeEEEeecCCcceeE
Q psy18231 137 TRILYELPKEWSIRVYRPLTVN---RELFVLSGLMHTRFPVD--GSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVND 211 (540)
Q Consensus 137 ~~~~~~~~~~~~i~~~~~~~~~---~~~~h~~~v~~v~~spd--g~~lat~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~ 211 (540)
..++++++-.+.+++|+..+.. ...+|.+.|.++.|+|. +..||||+.||++++|++.+..++..+.+|...|..
T Consensus 187 s~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~~l~gH~~RVs~ 266 (459)
T KOG0272|consen 187 SKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPLQDLEGHLARVSR 266 (459)
T ss_pred CCeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCcchhhhhcchhhhee
Confidence 4566778889999999988764 35679999999999996 668999999999999999999999999999999999
Q ss_pred EEEeeCCCeEEEeeCCCeEEEEEcCCCceeEeccccCCceeEEEECCCCCEEEEecCCCcEEEEEecCCCCCCcchhhhh
Q psy18231 212 ATAACDSSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQVRCLN 291 (540)
Q Consensus 212 l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 291 (540)
++|+|+|++|+|++.|.+-++||+++++.+...++|...|.+++|.+||.+++|||.|..-+|||++++.+
T Consensus 267 VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~--------- 337 (459)
T KOG0272|consen 267 VAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRC--------- 337 (459)
T ss_pred eeecCCCceeeecccccchhhcccccchhhHhhcccccccceeEecCCCceeeccCccchhheeecccCcE---------
Confidence 99999999999999999999999999999988899999999999999999999999999999999999872
Q ss_pred HhhhhcCCceeEEEEeecccccccccCceeeEEEeeeecccccceeeeeeccceeEEEeecccceecccccccccccchh
Q psy18231 292 EALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCF 371 (540)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (540)
+
T Consensus 338 -------------------------------------------------------------------------------i 338 (459)
T KOG0272|consen 338 -------------------------------------------------------------------------------I 338 (459)
T ss_pred -------------------------------------------------------------------------------E
Confidence 3
Q ss_pred hhhhcccccEEEEEecC--CeeEeeeCCCeEEEEeCCCCceEEeeeCC--ceEEEEEec-CCcEEEeecCCCeEEEEecc
Q psy18231 372 QALKEARDSITSVHVSD--HEILTASLDCRIRRYDIRTGNLVTDYVGE--PIVDACFTR-DCQCILTCSTDECLRLFDKA 446 (540)
Q Consensus 372 ~~~~~~~~~v~~l~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~--~i~~~~~sp-~~~~l~~~~~dg~i~i~d~~ 446 (540)
..+.+|..+|.+++|+| ..+++|+.|++++|||++..+.+..+..| -|+.+.|+| .|.+|++++.|++++||...
T Consensus 339 m~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~ 418 (459)
T KOG0272|consen 339 MFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTR 418 (459)
T ss_pred EEecccccceeeEeECCCceEEeecCCCCcEEEeeecccccceecccccchhhheEecccCCeEEEEcccCcceeeecCC
Confidence 36778999999999999 77999999999999999999998888764 699999999 88999999999999999999
Q ss_pred ccchhhhhccCcCCcceEEEEecCCCCeEEEeeCCCcEEEEE
Q psy18231 447 TGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQ 488 (540)
Q Consensus 447 ~~~~~~~~~~~~~~v~~~~~~~s~~~~~l~s~s~dg~i~iwd 488 (540)
++.+++++.+|.+.|.++ .+++|++++++++.|.++++|.
T Consensus 419 ~~~~~ksLaGHe~kV~s~--Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 419 TWSPLKSLAGHEGKVISL--DISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred CcccchhhcCCccceEEE--EeccCCceEEEeccCceeeecc
Confidence 999999999999999877 8999999999999999999995
|
|
| >KOG0319|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-42 Score=320.34 Aligned_cols=395 Identities=19% Similarity=0.258 Sum_probs=295.2
Q ss_pred hhhhhcccccceeeeecccccc----eeeeeecCeEEEEeCCCCCEEEEeeCCCcEEEEcCCCCeeEEEeecCCcceeEE
Q psy18231 137 TRILYELPKEWSIRVYRPLTVN----RELFVLSGLMHTRFPVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDA 212 (540)
Q Consensus 137 ~~~~~~~~~~~~i~~~~~~~~~----~~~~h~~~v~~v~~spdg~~lat~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l 212 (540)
...++......-+++|...+.. ....|++||..++|+|.|..|++|+.||.++|||+..+.+...|+||.+.|.++
T Consensus 74 ~~~L~~a~rs~llrv~~L~tgk~irswKa~He~Pvi~ma~~~~g~LlAtggaD~~v~VWdi~~~~~th~fkG~gGvVssl 153 (775)
T KOG0319|consen 74 EEVLVTASRSQLLRVWSLPTGKLIRSWKAIHEAPVITMAFDPTGTLLATGGADGRVKVWDIKNGYCTHSFKGHGGVVSSL 153 (775)
T ss_pred ccEEEEeeccceEEEEEcccchHhHhHhhccCCCeEEEEEcCCCceEEeccccceEEEEEeeCCEEEEEecCCCceEEEE
Confidence 4555666777788888888764 234599999999999999999999999999999999999999999999999999
Q ss_pred EEeeCCC--eEEEeeCCCeEEEEEcCCCce-eEeccccCCceeEEEECCCCCEEEEecCCCcEEEEEecCCCCCCcchhh
Q psy18231 213 TAACDSS--QIASGASDKSVILWEVTTGQP-VRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQVRC 289 (540)
Q Consensus 213 ~~sp~~~--~l~s~s~dg~i~iwd~~~~~~-~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 289 (540)
.|+|+-+ .|++|..|+++++||+++... +..+..|.+.|++++|++|+..++++|+|..+.+||+.+.+.... .+
T Consensus 154 ~F~~~~~~~lL~sg~~D~~v~vwnl~~~~tcl~~~~~H~S~vtsL~~~~d~~~~ls~~RDkvi~vwd~~~~~~l~~--lp 231 (775)
T KOG0319|consen 154 LFHPHWNRWLLASGATDGTVRVWNLNDKRTCLHTMILHKSAVTSLAFSEDSLELLSVGRDKVIIVWDLVQYKKLKT--LP 231 (775)
T ss_pred EeCCccchhheeecCCCceEEEEEcccCchHHHHHHhhhhheeeeeeccCCceEEEeccCcEEEEeehhhhhhhhe--ec
Confidence 9999654 489999999999999996654 778889999999999999999999999999999999865442111 00
Q ss_pred hhHhhhh----------------------------------------c-CCceeEEEE--------eeccccccc-----
Q psy18231 290 LNEALKE----------------------------------------A-RDSITSVHS--------LVKSTKNHL----- 315 (540)
Q Consensus 290 ~~~~~~~----------------------------------------~-~~~~~~~~~--------~~~~~~~~~----- 315 (540)
..+.+.. . ......... +.....+.+
T Consensus 232 ~ye~~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~ 311 (775)
T KOG0319|consen 232 LYESLESVVRLREELGGKGEYIITAGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDED 311 (775)
T ss_pred hhhheeeEEEechhcCCcceEEEEecCCceEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEcc
Confidence 0000000 0 000000000 000000000
Q ss_pred ----------------------------ccCceeeEEEeeeecccc--------cceeeeeeccce-eEEEeecccceec
Q psy18231 316 ----------------------------SNGLLTKLVFAFRCKYLN--------GLLSGVLMSTQH-LMVLLDFLGSTQI 358 (540)
Q Consensus 316 ----------------------------~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~-~~~~~~~~~~~~~ 358 (540)
...........+++.... ..+........+ .+..........+
T Consensus 312 ~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~~g~llat~sKD~svil 391 (775)
T KOG0319|consen 312 ELTIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQIIPGHTEAVLSLDVWSSGDLLATGSKDKSVIL 391 (775)
T ss_pred ccEEehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceEEEeCchhheeeeeecccCcEEEEecCCceEEE
Confidence 000000011111111111 111111111222 2233333445555
Q ss_pred ccccccccccchhhhhhcccccEEEEEecC---CeeEeeeCCCeEEEEeCCCCce-----E------EeeeCCceEEEEE
Q psy18231 359 GDVTPISIHNSCFQALKEARDSITSVHVSD---HEILTASLDCRIRRYDIRTGNL-----V------TDYVGEPIVDACF 424 (540)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~---~~l~~~~~dg~i~iwd~~~~~~-----~------~~~~~~~i~~~~~ 424 (540)
|.+........++....+|...|.+++++. ..|+++|.|+++++|++...+. + ...++..|+++++
T Consensus 392 Wr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vai 471 (775)
T KOG0319|consen 392 WRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAI 471 (775)
T ss_pred EEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEe
Confidence 655444445556778889999999999976 8999999999999999986221 1 1123468999999
Q ss_pred ecCCcEEEeecCCCeEEEEeccccchhhhhccCcCCcceEEEEecCCCCeEEEeeCCCcEEEEEecCCcceeEEEecccc
Q psy18231 425 TRDCQCILTCSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGK 504 (540)
Q Consensus 425 sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~ 504 (540)
+|+.+++++|+.|.+.+||+++..+.+.++.+|...++++ .|++.++.++|+|.|++|+||.+.+..+++++. +|.
T Consensus 472 a~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V--~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~e--GH~ 547 (775)
T KOG0319|consen 472 APNDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCV--SFSKNDQLLATCSGDKTVKIWSISTFSCLKTFE--GHT 547 (775)
T ss_pred cCCCceEEecccccceeeecccCceEEEEeeCCccceEEE--EeccccceeEeccCCceEEEEEeccceeeeeec--Ccc
Confidence 9999999999999999999999999999999999999999 899999999999999999999999999999999 999
Q ss_pred eeeeEEEEcCCCcEEEeec-CCeeEEEEcccccC
Q psy18231 505 AVVNSLCSHPTRKHIMSAC-GNNVKLWTAEEDYG 537 (540)
Q Consensus 505 ~~v~~l~~s~d~~~l~s~~-d~~i~iw~~~~~~~ 537 (540)
..|..+.|-.+|+.|++++ ||-+++|++.+..-
T Consensus 548 ~aVlra~F~~~~~qliS~~adGliKlWnikt~eC 581 (775)
T KOG0319|consen 548 SAVLRASFIRNGKQLISAGADGLIKLWNIKTNEC 581 (775)
T ss_pred ceeEeeeeeeCCcEEEeccCCCcEEEEeccchhh
Confidence 9999999999999999999 99999999987643
|
|
| >KOG0318|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-40 Score=294.84 Aligned_cols=348 Identities=16% Similarity=0.250 Sum_probs=259.7
Q ss_pred hhhcccccceeeeecccccceeeee-----ecCeEEEEeCCCCCEEEEeeCC----CcEEEEcCCCC-------------
Q psy18231 139 ILYELPKEWSIRVYRPLTVNRELFV-----LSGLMHTRFPVDGSYCLTCGSD----KKIKLWNPYRN------------- 196 (540)
Q Consensus 139 ~~~~~~~~~~i~~~~~~~~~~~~~h-----~~~v~~v~~spdg~~lat~~~d----g~i~iwd~~~~------------- 196 (540)
.++++...+++|+|+.......+.+ .++|..++|++|+++|++.+.. |.+.+||.-+.
T Consensus 73 yiASGD~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~ds~RI~avGEGrerfg~~F~~DSG~SvGei~GhSr~ins 152 (603)
T KOG0318|consen 73 YIASGDVSGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFDSKRIAAVGEGRERFGHVFLWDSGNSVGEITGHSRRINS 152 (603)
T ss_pred EEeecCCcCcEEEEeccCcceeeeeeeeecccccccceeCCCCcEEEEEecCccceeEEEEecCCCccceeeccceeEee
Confidence 5567778888888888776665553 3778888888888877765532 35566663221
Q ss_pred ----------------------------eeEEEeecCCcceeEEEEeeCCCeEEEeeCCCeEEEEEcCCCceeEecc---
Q psy18231 197 ----------------------------LLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPVRRWR--- 245 (540)
Q Consensus 197 ----------------------------~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~--- 245 (540)
+...++..|..-|.|+.|+|||+++++++.||.|.+||-.+|+.+..+.
T Consensus 153 ~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~ 232 (603)
T KOG0318|consen 153 VDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSD 232 (603)
T ss_pred eeccCCCceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCC
Confidence 1123345688899999999999999999999999999999999999988
Q ss_pred ccCCceeEEEECCCCCEEEEecCCCcEEEEEecCCCCCCcchhhhhHhhhhcCCceeEEEEeecccccccccCceeeEEE
Q psy18231 246 EHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHLSNGLLTKLVF 325 (540)
Q Consensus 246 ~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (540)
+|.+.|.+++|+||++.++|+|.|.+++|||+.+.+.....
T Consensus 233 aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~--------------------------------------- 273 (603)
T KOG0318|consen 233 AHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTW--------------------------------------- 273 (603)
T ss_pred CccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEe---------------------------------------
Confidence 89999999999999999999999999999999987631111
Q ss_pred eeeec-ccccceeeeeeccceeEEEeecccceecccccccccccchhhhhhcccccEEEEEecC--CeeEeeeCCCeEEE
Q psy18231 326 AFRCK-YLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEARDSITSVHVSD--HEILTASLDCRIRR 402 (540)
Q Consensus 326 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~--~~l~~~~~dg~i~i 402 (540)
... .......+.+.. ...++.....|.....+... ...++.+.+|...|+++..++ ..|++|+.||.|.-
T Consensus 274 --~~~~~v~dqqvG~lWq-kd~lItVSl~G~in~ln~~d----~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~ 346 (603)
T KOG0318|consen 274 --PMGSTVEDQQVGCLWQ-KDHLITVSLSGTINYLNPSD----PSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINS 346 (603)
T ss_pred --ecCCchhceEEEEEEe-CCeEEEEEcCcEEEEecccC----CChhheecccccceeEEEEcCCCCEEEeeccCceEEE
Confidence 000 011111122222 22333333333332222211 224567889999999999988 88999999999999
Q ss_pred EeCCCCceE-------------------------------Ee--------------------------------------
Q psy18231 403 YDIRTGNLV-------------------------------TD-------------------------------------- 413 (540)
Q Consensus 403 wd~~~~~~~-------------------------------~~-------------------------------------- 413 (540)
||..++..- +.
T Consensus 347 W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~ 426 (603)
T KOG0318|consen 347 WDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACIS 426 (603)
T ss_pred EecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecC
Confidence 987643210 00
Q ss_pred ----ee----------CCceEEEEEecCCcEEEeecCCCeEEEEeccccch--hhhhccCcCCcceEEEEecCCCCeEEE
Q psy18231 414 ----YV----------GEPIVDACFTRDCQCILTCSTDECLRLFDKATGEL--LEEYKGHKSGDFRIECCLDSKDSQIFC 477 (540)
Q Consensus 414 ----~~----------~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~--~~~~~~~~~~v~~~~~~~s~~~~~l~s 477 (540)
+. +-...+++++|+++.+++|+.|+.|+||.+..++. ......|.++++.+ +||||+.|||+
T Consensus 427 ~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~v--aySpd~~yla~ 504 (603)
T KOG0318|consen 427 DIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDV--AYSPDGAYLAA 504 (603)
T ss_pred cEEEEecCCcceeeccccccceEEEcCCCCEEEEecccceEEEEEecCCcccceeeeecccCCceEE--EECCCCcEEEE
Confidence 00 01246788999999999999999999999987553 34567899999999 89999999999
Q ss_pred eeCCCcEEEEEecCCcceeEEEecccceeeeEEEEcCCCcEEEeec-CCeeEEEEcccc
Q psy18231 478 GSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC-GNNVKLWTAEED 535 (540)
Q Consensus 478 ~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~-d~~i~iw~~~~~ 535 (540)
|...+.|.+||+.+.+.. .-...-|.+.|++++|+|+.+++|+|+ |..|.||+++..
T Consensus 505 ~Da~rkvv~yd~~s~~~~-~~~w~FHtakI~~~aWsP~n~~vATGSlDt~Viiysv~kP 562 (603)
T KOG0318|consen 505 GDASRKVVLYDVASREVK-TNRWAFHTAKINCVAWSPNNKLVATGSLDTNVIIYSVKKP 562 (603)
T ss_pred eccCCcEEEEEcccCcee-cceeeeeeeeEEEEEeCCCceEEEeccccceEEEEEccCh
Confidence 999999999999988773 322325999999999999999999999 999999999864
|
|
| >KOG0318|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-40 Score=296.76 Aligned_cols=385 Identities=16% Similarity=0.212 Sum_probs=278.1
Q ss_pred cceeccccchhhhhhcccccceeeeecccccce---eeeeecCeEEEEeCCCCCEEEEeeCCCcEEEEcCCCCeeEEEee
Q psy18231 127 PLLFSLPRTITRILYELPKEWSIRVYRPLTVNR---ELFVLSGLMHTRFPVDGSYCLTCGSDKKIKLWNPYRNLLLKTYG 203 (540)
Q Consensus 127 ~~~~s~~~~~~~~~~~~~~~~~i~~~~~~~~~~---~~~h~~~v~~v~~spdg~~lat~~~dg~i~iwd~~~~~~~~~~~ 203 (540)
...+.+-+++.-.+.+++.|.++.+|+-...+- ...|..-|.|+.|+|||.++|+.+.||+|.+||-.+++.+..+.
T Consensus 150 ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~ 229 (603)
T KOG0318|consen 150 INSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELE 229 (603)
T ss_pred EeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEec
Confidence 334444445555567889999999998766542 34588999999999999999999999999999999999999997
Q ss_pred ---cCCcceeEEEEeeCCCeEEEeeCCCeEEEEEcCCCce----------------------------------------
Q psy18231 204 ---GHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQP---------------------------------------- 240 (540)
Q Consensus 204 ---~h~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~---------------------------------------- 240 (540)
+|++.|.+++|+||++.++|++.|.+++|||+.++++
T Consensus 230 ~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d 309 (603)
T KOG0318|consen 230 DSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSD 309 (603)
T ss_pred CCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccC
Confidence 8999999999999999999999999999999976642
Q ss_pred ---eEeccccCCceeEEEECCCCCEEEEecCCCcEEEEEecCCCCCCcchhhhhHhhhhcCCceeEEEEeecccccc-cc
Q psy18231 241 ---VRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNH-LS 316 (540)
Q Consensus 241 ---~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 316 (540)
+..+.+|...|+++..+|++++|++|+.||.|.-|+..++...++.. ..+.+.+..+....... ..
T Consensus 310 ~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g----------~~h~nqI~~~~~~~~~~~~t 379 (603)
T KOG0318|consen 310 PSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAG----------KGHTNQIKGMAASESGELFT 379 (603)
T ss_pred CChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCcccccccc----------ccccceEEEEeecCCCcEEE
Confidence 23345799999999999999999999999999999999887543321 11222233333333222 12
Q ss_pred cCceeeEEEe-eee--------cccccceeeeeeccceeEEEeeccccee-cccccccccccchhhhhhcccccEEEEEe
Q psy18231 317 NGLLTKLVFA-FRC--------KYLNGLLSGVLMSTQHLMVLLDFLGSTQ-IGDVTPISIHNSCFQALKEARDSITSVHV 386 (540)
Q Consensus 317 ~~~~~~~~~~-~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~v~~l~~ 386 (540)
.+..+.+... ... ..+.....++....++.+.+........ ..+.... ....-.-...++++
T Consensus 380 ~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~--------~~~~~~y~~s~vAv 451 (603)
T KOG0318|consen 380 IGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKV--------SSIPIGYESSAVAV 451 (603)
T ss_pred EecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcc--------eeeccccccceEEE
Confidence 2211111111 000 0112222233333333222222221111 1111110 01112334567888
Q ss_pred cC--CeeEeeeCCCeEEEEeCCCCceEEe----eeCCceEEEEEecCCcEEEeecCCCeEEEEeccccchhh-hhccCcC
Q psy18231 387 SD--HEILTASLDCRIRRYDIRTGNLVTD----YVGEPIVDACFTRDCQCILTCSTDECLRLFDKATGELLE-EYKGHKS 459 (540)
Q Consensus 387 ~~--~~l~~~~~dg~i~iwd~~~~~~~~~----~~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~-~~~~~~~ 459 (540)
+| +.+++|+.|+.|++|.+........ -+..+|++++||||+.+||++...+.+.+||..+.+... .+.-|+.
T Consensus 452 ~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~~~~~w~FHta 531 (603)
T KOG0318|consen 452 SPDGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASREVKTNRWAFHTA 531 (603)
T ss_pred cCCCCEEEEecccceEEEEEecCCcccceeeeecccCCceEEEECCCCcEEEEeccCCcEEEEEcccCceecceeeeeee
Confidence 88 8999999999999999987654322 234789999999999999999999999999999887643 3345999
Q ss_pred CcceEEEEecCCCCeEEEeeCCCcEEEEEecCCcceeEEEecccceeeeEEEEcCCCcEEEeec-CCeeEEEEcc
Q psy18231 460 GDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC-GNNVKLWTAE 533 (540)
Q Consensus 460 ~v~~~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~-d~~i~iw~~~ 533 (540)
.|.++ +|+|+..++|+|+-|..|.||++........++. +|...|+.+.|-.+ ..|++++ |..|++|++.
T Consensus 532 kI~~~--aWsP~n~~vATGSlDt~Viiysv~kP~~~i~ikn-AH~~gVn~v~wlde-~tvvSsG~Da~iK~W~v~ 602 (603)
T KOG0318|consen 532 KINCV--AWSPNNKLVATGSLDTNVIIYSVKKPAKHIIIKN-AHLGGVNSVAWLDE-STVVSSGQDANIKVWNVT 602 (603)
T ss_pred eEEEE--EeCCCceEEEeccccceEEEEEccChhhheEecc-ccccCceeEEEecC-ceEEeccCcceeEEeccc
Confidence 99888 8999999999999999999999988766544443 88888999999855 5566666 9999999985
|
|
| >KOG0284|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-43 Score=302.43 Aligned_cols=278 Identities=21% Similarity=0.341 Sum_probs=248.8
Q ss_pred cCeEEEEeCCCCCEEEEeeCCCcEEEEcCCCCeeEEEeecCCcceeEEEEeeCCCeEEEeeCCCeEEEEEcCCCceeEec
Q psy18231 165 SGLMHTRFPVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPVRRW 244 (540)
Q Consensus 165 ~~v~~v~~spdg~~lat~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~ 244 (540)
-+|..|.|.|+|+.|++|+..|.+.+|+..+-.....++.|..+|.++.|++++.+++||+.+|.|++|+..-.. +..+
T Consensus 97 c~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnn-Vk~~ 175 (464)
T KOG0284|consen 97 CPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNN-VKII 175 (464)
T ss_pred cceeeEEEcCCCceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchhh-hHHh
Confidence 479999999999999999999999999986555555668899999999999999999999999999999975443 4444
Q ss_pred cc-cCCceeEEEECCCCCEEEEecCCCcEEEEEecCCCCCCcchhhhhHhhhhcCCceeEEEEeecccccccccCceeeE
Q psy18231 245 RE-HASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHLSNGLLTKL 323 (540)
Q Consensus 245 ~~-h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (540)
+. |...|.+++|+|+...++++|.||+|+|||....++
T Consensus 176 ~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~ke----------------------------------------- 214 (464)
T KOG0284|consen 176 QAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKE----------------------------------------- 214 (464)
T ss_pred hHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCch-----------------------------------------
Confidence 44 559999999999999999999999999999987662
Q ss_pred EEeeeecccccceeeeeeccceeEEEeecccceecccccccccccchhhhhhcccccEEEEEecC--CeeEeeeCCCeEE
Q psy18231 324 VFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEARDSITSVHVSD--HEILTASLDCRIR 401 (540)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~--~~l~~~~~dg~i~ 401 (540)
...+.+|.-.|.+++|+| .++++++.|..|+
T Consensus 215 -----------------------------------------------e~vL~GHgwdVksvdWHP~kgLiasgskDnlVK 247 (464)
T KOG0284|consen 215 -----------------------------------------------ERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVK 247 (464)
T ss_pred -----------------------------------------------hheeccCCCCcceeccCCccceeEEccCCceeE
Confidence 125678999999999999 8999999999999
Q ss_pred EEeCCCCceEEeeeC--CceEEEEEecCCcEEEeecCCCeEEEEeccccchhhhhccCcCCcceEEEEecCC-CCeEEEe
Q psy18231 402 RYDIRTGNLVTDYVG--EPIVDACFTRDCQCILTCSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSK-DSQIFCG 478 (540)
Q Consensus 402 iwd~~~~~~~~~~~~--~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~s~~-~~~l~s~ 478 (540)
+||.+++.++.++++ +.|..+.|+|++++|++++.|..+++||+++.+.+.++++|...++++ .|+|- ..+|.+|
T Consensus 248 lWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~--~WhP~~~~lftsg 325 (464)
T KOG0284|consen 248 LWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTSL--TWHPLNESLFTSG 325 (464)
T ss_pred eecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcchhhheee--ccccccccceeec
Confidence 999999999999987 479999999999999999999999999999999999999999999988 78875 4578999
Q ss_pred eCCCcEEEEEecCCcceeEEEecccceeeeEEEEcCCCcEEEeec-CCeeEEEEccc
Q psy18231 479 SSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC-GNNVKLWTAEE 534 (540)
Q Consensus 479 s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~-d~~i~iw~~~~ 534 (540)
+.||.|..|.+...+++..+.. +|...|.+++|+|=|.+|++|+ |.++++|.-..
T Consensus 326 g~Dgsvvh~~v~~~~p~~~i~~-AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~r~r 381 (464)
T KOG0284|consen 326 GSDGSVVHWVVGLEEPLGEIPP-AHDGEIWSLAYHPLGHILATGSNDRTVRFWTRNR 381 (464)
T ss_pred cCCCceEEEeccccccccCCCc-ccccceeeeeccccceeEeecCCCcceeeeccCC
Confidence 9999999999987777777765 8999999999999999999999 99999997643
|
|
| >KOG0295|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-42 Score=294.35 Aligned_cols=284 Identities=21% Similarity=0.311 Sum_probs=262.1
Q ss_pred cceeeeeecCeEEEEeCCCCCEEEEeeCCCcEEEEcCCCCeeEEEeecCCcceeEEEEeeCCCeEEEeeCCCeEEEEEcC
Q psy18231 157 VNRELFVLSGLMHTRFPVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVT 236 (540)
Q Consensus 157 ~~~~~~h~~~v~~v~~spdg~~lat~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~ 236 (540)
..+..+|..+|+.+-|+|+-..+++++.|++|++||..+++....+++|+..|.+++|+..|++|++++.|=.+++||..
T Consensus 101 ~~~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~ 180 (406)
T KOG0295|consen 101 VQKLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFD 180 (406)
T ss_pred hhhhhccccceeeeeeccCceEEEEecCCceEEEEEccchhhhhhhhccccceeEEEEecCccEEEecCCccchhheeHH
Confidence 34567799999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred C-CceeEeccccCCceeEEEECCCCCEEEEecCCCcEEEEEecCCCCCCcchhhhhHhhhhcCCceeEEEEeeccccccc
Q psy18231 237 T-GQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHL 315 (540)
Q Consensus 237 ~-~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (540)
+ .++++.+.+|...|.++.|-|.|.++++++.|.+|+.|++.++.
T Consensus 181 ~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~---------------------------------- 226 (406)
T KOG0295|consen 181 TFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGY---------------------------------- 226 (406)
T ss_pred HHHHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecccce----------------------------------
Confidence 7 56777888999999999999999999999999999999999876
Q ss_pred ccCceeeEEEeeeecccccceeeeeeccceeEEEeecccceecccccccccccchhhhhhcccccEEEEEecC--CeeEe
Q psy18231 316 SNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEARDSITSVHVSD--HEILT 393 (540)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~--~~l~~ 393 (540)
++.++.+|...|..+..+. .++++
T Consensus 227 ------------------------------------------------------cv~t~~~h~ewvr~v~v~~DGti~As 252 (406)
T KOG0295|consen 227 ------------------------------------------------------CVKTFPGHSEWVRMVRVNQDGTIIAS 252 (406)
T ss_pred ------------------------------------------------------eEEeccCchHhEEEEEecCCeeEEEe
Confidence 3447788999999999987 78899
Q ss_pred eeCCCeEEEEeCCCCceEEeee--CCceEEEEEecC---------------CcEEEeecCCCeEEEEeccccchhhhhcc
Q psy18231 394 ASLDCRIRRYDIRTGNLVTDYV--GEPIVDACFTRD---------------CQCILTCSTDECLRLFDKATGELLEEYKG 456 (540)
Q Consensus 394 ~~~dg~i~iwd~~~~~~~~~~~--~~~i~~~~~sp~---------------~~~l~~~~~dg~i~i~d~~~~~~~~~~~~ 456 (540)
++.|.++++|-+.++++...+. .++|-+++|.|. +.++.+++.|++|++||+.++.++.++.+
T Consensus 253 ~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~g 332 (406)
T KOG0295|consen 253 CSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVG 332 (406)
T ss_pred cCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEec
Confidence 9999999999999996665554 478999999772 25899999999999999999999999999
Q ss_pred CcCCcceEEEEecCCCCeEEEeeCCCcEEEEEecCCcceeEEEecccceeeeEEEEcCCCcEEEeec-CCeeEEEEc
Q psy18231 457 HKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC-GNNVKLWTA 532 (540)
Q Consensus 457 ~~~~v~~~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~-d~~i~iw~~ 532 (540)
|.+.|..+ +|+|.|+||+++.+|+++++||+++.++..++. .|..-|++++|..+..++++|+ |.++++|.-
T Consensus 333 hdnwVr~~--af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~--ah~hfvt~lDfh~~~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 333 HDNWVRGV--AFSPGGKYILSCADDKTLRVWDLKNLQCMKTLE--AHEHFVTSLDFHKTAPYVVTGSVDQTVKVWEC 405 (406)
T ss_pred ccceeeee--EEcCCCeEEEEEecCCcEEEEEeccceeeeccC--CCcceeEEEecCCCCceEEeccccceeeeeec
Confidence 99999988 899999999999999999999999999999999 8999999999999999999999 999999974
|
|
| >KOG0273|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-41 Score=295.05 Aligned_cols=313 Identities=15% Similarity=0.253 Sum_probs=276.0
Q ss_pred Ccceeccccchhhhhhcccccceeeeecccc------ccee-----------eeeecCeEEEEeCCCCCEEEEeeCCCcE
Q psy18231 126 HPLLFSLPRTITRILYELPKEWSIRVYRPLT------VNRE-----------LFVLSGLMHTRFPVDGSYCLTCGSDKKI 188 (540)
Q Consensus 126 ~~~~~s~~~~~~~~~~~~~~~~~i~~~~~~~------~~~~-----------~~h~~~v~~v~~spdg~~lat~~~dg~i 188 (540)
..+...+.+....+++..+.+.+.|+|+... .... ..-...|++++|+.+|..||+|+.||.+
T Consensus 180 ~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~~LatG~~~G~~ 259 (524)
T KOG0273|consen 180 EVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGTLLATGSEDGEA 259 (524)
T ss_pred ceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCCCeEEEeecCcEE
Confidence 3455566666676888889999999999875 1111 1133679999999999999999999999
Q ss_pred EEEcCCCCeeEEEeecCCcceeEEEEeeCCCeEEEeeCCCeEEEEEcCCCceeEeccccCCceeEEEECCCCCEEEEecC
Q psy18231 189 KLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQ 268 (540)
Q Consensus 189 ~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~ 268 (540)
+||+. +|.++.++..|+++|.++.|+.+|.+|++++.|+++.+||..++...+.+..|..+-..+.|-.+ ..+++.+.
T Consensus 260 riw~~-~G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~~-~~F~ts~t 337 (524)
T KOG0273|consen 260 RIWNK-DGNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQSN-DEFATSST 337 (524)
T ss_pred EEEec-CchhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeeeccCCccceEEecC-ceEeecCC
Confidence 99995 78889999999999999999999999999999999999999999999999999988888999754 46889999
Q ss_pred CCcEEEEEecCCCCCCcchhhhhHhhhhcCCceeEEEEeecccccccccCceeeEEEeeeecccccceeeeeeccceeEE
Q psy18231 269 DNTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMV 348 (540)
Q Consensus 269 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (540)
||.|+++.+....
T Consensus 338 d~~i~V~kv~~~~------------------------------------------------------------------- 350 (524)
T KOG0273|consen 338 DGCIHVCKVGEDR------------------------------------------------------------------- 350 (524)
T ss_pred CceEEEEEecCCC-------------------------------------------------------------------
Confidence 9999999987655
Q ss_pred EeecccceecccccccccccchhhhhhcccccEEEEEecC--CeeEeeeCCCeEEEEeCCCCceEEeeeC--CceEEEEE
Q psy18231 349 LLDFLGSTQIGDVTPISIHNSCFQALKEARDSITSVHVSD--HEILTASLDCRIRRYDIRTGNLVTDYVG--EPIVDACF 424 (540)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~--~~i~~~~~ 424 (540)
+..++.+|.+.|.++.|+| .+|++++.|++++||.+........++. ..|+.+.|
T Consensus 351 ---------------------P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~w 409 (524)
T KOG0273|consen 351 ---------------------PVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKW 409 (524)
T ss_pred ---------------------cceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCCcchhhhhhhccceeeEee
Confidence 2237778999999999998 8999999999999999998888888876 46999999
Q ss_pred ecCC---------cEEEeecCCCeEEEEeccccchhhhhccCcCCcceEEEEecCCCCeEEEeeCCCcEEEEEecCCcce
Q psy18231 425 TRDC---------QCILTCSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQI 495 (540)
Q Consensus 425 sp~~---------~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~ 495 (540)
+|+| ..+++++.|++|++||+..+.++.+|..|..+|+++ +|+|+|+++|+|+.||.|.+|+.++++.+
T Consensus 410 sp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysv--afS~~g~ylAsGs~dg~V~iws~~~~~l~ 487 (524)
T KOG0273|consen 410 SPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSV--AFSPNGRYLASGSLDGCVHIWSTKTGKLV 487 (524)
T ss_pred cCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEE--EecCCCcEEEecCCCCeeEeccccchhee
Confidence 9964 469999999999999999999999999999999998 89999999999999999999999999999
Q ss_pred eEEEecccceeeeEEEEcCCCcEEEeec-CCeeEEEEcc
Q psy18231 496 STLIHSVGKAVVNSLCSHPTRKHIMSAC-GNNVKLWTAE 533 (540)
Q Consensus 496 ~~~~~~~~~~~v~~l~~s~d~~~l~s~~-d~~i~iw~~~ 533 (540)
+... ..+.|..++|+.+|.+|..+. |+.+.+-|+.
T Consensus 488 ~s~~---~~~~Ifel~Wn~~G~kl~~~~sd~~vcvldlr 523 (524)
T KOG0273|consen 488 KSYQ---GTGGIFELCWNAAGDKLGACASDGSVCVLDLR 523 (524)
T ss_pred Eeec---CCCeEEEEEEcCCCCEEEEEecCCCceEEEec
Confidence 9986 567799999999999998887 9999998874
|
|
| >KOG0319|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-40 Score=308.48 Aligned_cols=390 Identities=18% Similarity=0.226 Sum_probs=301.5
Q ss_pred eEEEeccccceecccc-cCCcceeccccchhhhhhcccccceeeeecccccc---eeeeeecCeEEEEeCCCCCE--EEE
Q psy18231 108 RWAIKEGYGCALLSKQ-RTHPLLFSLPRTITRILYELPKEWSIRVYRPLTVN---RELFVLSGLMHTRFPVDGSY--CLT 181 (540)
Q Consensus 108 ~~~~~~g~g~~l~~~~-~~~~~~~s~~~~~~~~~~~~~~~~~i~~~~~~~~~---~~~~h~~~v~~v~~spdg~~--lat 181 (540)
.|...+|.-..++.-. ....+....++.. -+++.++.++.+++|+..... ...+|.+.|.++.|+|+-.+ |++
T Consensus 88 v~~L~tgk~irswKa~He~Pvi~ma~~~~g-~LlAtggaD~~v~VWdi~~~~~th~fkG~gGvVssl~F~~~~~~~lL~s 166 (775)
T KOG0319|consen 88 VWSLPTGKLIRSWKAIHEAPVITMAFDPTG-TLLATGGADGRVKVWDIKNGYCTHSFKGHGGVVSSLLFHPHWNRWLLAS 166 (775)
T ss_pred EEEcccchHhHhHhhccCCCeEEEEEcCCC-ceEEeccccceEEEEEeeCCEEEEEecCCCceEEEEEeCCccchhheee
Confidence 4666777555555542 2333444445444 778899999999999988754 45679999999999997654 789
Q ss_pred eeCCCcEEEEcCCCCee-EEEeecCCcceeEEEEeeCCCeEEEeeCCCeEEEEEcCCCc---------------------
Q psy18231 182 CGSDKKIKLWNPYRNLL-LKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQ--------------------- 239 (540)
Q Consensus 182 ~~~dg~i~iwd~~~~~~-~~~~~~h~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~--------------------- 239 (540)
|..|+++++||+.+... +..+..|.+.|++++|++|+..+++++.|..+.|||+.+.+
T Consensus 167 g~~D~~v~vwnl~~~~tcl~~~~~H~S~vtsL~~~~d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~ye~~E~vv~l~~~~ 246 (775)
T KOG0319|consen 167 GATDGTVRVWNLNDKRTCLHTMILHKSAVTSLAFSEDSLELLSVGRDKVIIVWDLVQYKKLKTLPLYESLESVVRLREEL 246 (775)
T ss_pred cCCCceEEEEEcccCchHHHHHHhhhhheeeeeeccCCceEEEeccCcEEEEeehhhhhhhheechhhheeeEEEechhc
Confidence 99999999999986654 77888999999999999999999999999999999873211
Q ss_pred --------------------------------------------------------------------------------
Q psy18231 240 -------------------------------------------------------------------------------- 239 (540)
Q Consensus 240 -------------------------------------------------------------------------------- 239 (540)
T Consensus 247 ~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI 326 (775)
T KOG0319|consen 247 GGKGEYIITAGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDEI 326 (775)
T ss_pred CCcceEEEEecCCceEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEEehhhcCCchhh
Confidence
Q ss_pred ------------------------------eeEeccccCCceeEEEECCCCCEEEEecCCCcEEEEEecCCCCCCcchhh
Q psy18231 240 ------------------------------PVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQVRC 289 (540)
Q Consensus 240 ------------------------------~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 289 (540)
..+.+.+|...|.++....+|.+|+|||.|.++++|.++.+......
T Consensus 327 ~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~--- 403 (775)
T KOG0319|consen 327 LDMKFLGPEESHLAVATNSPELRLYTLPTSYCQIIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLC--- 403 (775)
T ss_pred eeeeecCCccceEEEEeCCCceEEEecCCCceEEEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhh---
Confidence 01123357777777775556778899999999999988444321111
Q ss_pred hhHhhhhcCCceeEEEEeecccccccccCceeeEEEeeeecccccceeeeeeccceeEEEeecccceecccccccccccc
Q psy18231 290 LNEALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNS 369 (540)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (540)
-....++...+..+.. ...+....+..+.+..+.+|+...+..... .....
T Consensus 404 -~a~~~gH~~svgava~------------------------~~~~asffvsvS~D~tlK~W~l~~s~~~~~----~~~~~ 454 (775)
T KOG0319|consen 404 -VAQANGHTNSVGAVAG------------------------SKLGASFFVSVSQDCTLKLWDLPKSKETAF----PIVLT 454 (775)
T ss_pred -hhhhcccccccceeee------------------------cccCccEEEEecCCceEEEecCCCcccccc----cceeh
Confidence 1111222222222221 111222334556777788887766322211 22223
Q ss_pred hhhhhhcccccEEEEEecC--CeeEeeeCCCeEEEEeCCCCceEEeeeCC--ceEEEEEecCCcEEEeecCCCeEEEEec
Q psy18231 370 CFQALKEARDSITSVHVSD--HEILTASLDCRIRRYDIRTGNLVTDYVGE--PIVDACFTRDCQCILTCSTDECLRLFDK 445 (540)
Q Consensus 370 ~~~~~~~~~~~v~~l~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~--~i~~~~~sp~~~~l~~~~~dg~i~i~d~ 445 (540)
+......|...|++++++| .++++||.|.+.+||+++.......+.+| .+.++.|+|..+.+++++.|++|+||.+
T Consensus 455 ~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~i 534 (775)
T KOG0319|consen 455 CRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSI 534 (775)
T ss_pred hhHHHHhhcccccceEecCCCceEEecccccceeeecccCceEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEe
Confidence 3446678999999999999 89999999999999999999999999885 7999999999999999999999999999
Q ss_pred cccchhhhhccCcCCcceEEEEecCCCCeEEEeeCCCcEEEEEecCCcceeEEEecccceeeeEEEEcCCCcEEEeec-C
Q psy18231 446 ATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC-G 524 (540)
Q Consensus 446 ~~~~~~~~~~~~~~~v~~~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~-d 524 (540)
.+..++++|.+|+..|... .|-.+|+.|++++.||-|++|++++++++.++. .|+..|.+++.+|.+.+++||+ |
T Consensus 535 s~fSClkT~eGH~~aVlra--~F~~~~~qliS~~adGliKlWnikt~eC~~tlD--~H~DrvWaL~~~~~~~~~~tgg~D 610 (775)
T KOG0319|consen 535 STFSCLKTFEGHTSAVLRA--SFIRNGKQLISAGADGLIKLWNIKTNECEMTLD--AHNDRVWALSVSPLLDMFVTGGGD 610 (775)
T ss_pred ccceeeeeecCccceeEee--eeeeCCcEEEeccCCCcEEEEeccchhhhhhhh--hccceeEEEeecCccceeEecCCC
Confidence 9999999999999988665 888999999999999999999999999999999 9999999999999999999999 9
Q ss_pred CeeEEEEccc
Q psy18231 525 NNVKLWTAEE 534 (540)
Q Consensus 525 ~~i~iw~~~~ 534 (540)
|.|.+|.=.+
T Consensus 611 g~i~~wkD~T 620 (775)
T KOG0319|consen 611 GRIIFWKDVT 620 (775)
T ss_pred eEEEEeecCc
Confidence 9999996433
|
|
| >KOG0285|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-41 Score=285.21 Aligned_cols=286 Identities=20% Similarity=0.385 Sum_probs=257.1
Q ss_pred eeeeecCeEEEEeCCCCCEEEEeeCCCcEEEEcCCCCeeEEEeecCCcceeEEEEeeCCCeEEEeeCCCeEEEEEcCCCc
Q psy18231 160 ELFVLSGLMHTRFPVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQ 239 (540)
Q Consensus 160 ~~~h~~~v~~v~~spdg~~lat~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~ 239 (540)
..+|.+.|.|+++.|..+++++|+.|++|+|||+.+|++..++.||...|..+++|+-..||++++.|+.|+.||++..+
T Consensus 147 i~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDLe~nk 226 (460)
T KOG0285|consen 147 ISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLEYNK 226 (460)
T ss_pred hhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEEEechhhh
Confidence 45799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeEeccccCCceeEEEECCCCCEEEEecCCCcEEEEEecCCCCCCcchhhhhHhhhhcCCceeEEEEeecccccccccCc
Q psy18231 240 PVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHLSNGL 319 (540)
Q Consensus 240 ~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (540)
.++.+.+|-+.|.|++.+|.-..|++|+.|.++++||+++...
T Consensus 227 vIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~------------------------------------- 269 (460)
T KOG0285|consen 227 VIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRAS------------------------------------- 269 (460)
T ss_pred hHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccce-------------------------------------
Confidence 9999999999999999999989999999999999999998761
Q ss_pred eeeEEEeeeecccccceeeeeeccceeEEEeecccceecccccccccccchhhhhhcccccEEEEEecC--CeeEeeeCC
Q psy18231 320 LTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEARDSITSVHVSD--HEILTASLD 397 (540)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~--~~l~~~~~d 397 (540)
+..+.+|...|.++.+.| ..+++|+.|
T Consensus 270 ---------------------------------------------------V~~l~GH~~~V~~V~~~~~dpqvit~S~D 298 (460)
T KOG0285|consen 270 ---------------------------------------------------VHVLSGHTNPVASVMCQPTDPQVITGSHD 298 (460)
T ss_pred ---------------------------------------------------EEEecCCCCcceeEEeecCCCceEEecCC
Confidence 237789999999999997 889999999
Q ss_pred CeEEEEeCCCCceEEeeeC--CceEEEEEecCCcEEEeecCCCeEEEEeccccchhhhhccCcCCcceEEEEecCCCCeE
Q psy18231 398 CRIRRYDIRTGNLVTDYVG--EPIVDACFTRDCQCILTCSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQI 475 (540)
Q Consensus 398 g~i~iwd~~~~~~~~~~~~--~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~s~~~~~l 475 (540)
++|++||++.++....+.. ..+.+++.+|....+|+++.|. |+-|++..++.+..+.+|...+..+ +...| .++
T Consensus 299 ~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~dn-ik~w~~p~g~f~~nlsgh~~iintl--~~nsD-~v~ 374 (460)
T KOG0285|consen 299 STVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPDN-IKQWKLPEGEFLQNLSGHNAIINTL--SVNSD-GVL 374 (460)
T ss_pred ceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccCCcc-ceeccCCccchhhccccccceeeee--eeccC-ceE
Confidence 9999999999998888876 4789999999999999998875 9999999999999999999988877 55555 489
Q ss_pred EEeeCCCcEEEEEecCCcceeEEE---ec---ccceeeeEEEEcCCCcEEEeec-CCeeEEEEcccccC
Q psy18231 476 FCGSSDGKIYKWQLVDSSQISTLI---HS---VGKAVVNSLCSHPTRKHIMSAC-GNNVKLWTAEEDYG 537 (540)
Q Consensus 476 ~s~s~dg~i~iwd~~~~~~~~~~~---~~---~~~~~v~~l~~s~d~~~l~s~~-d~~i~iw~~~~~~~ 537 (540)
++|+++|.+.+||.+++-..+... .+ .....|.+.+|...|..|+++. |.+|++|.-++...
T Consensus 375 ~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg~rlit~eadKtIk~~keDe~aT 443 (460)
T KOG0285|consen 375 VSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTGSRLITGEADKTIKMYKEDEHAT 443 (460)
T ss_pred EEcCCceEEEEEecCcCcccccccccccCCccccccceeEEeecccCceEEeccCCcceEEEecccccC
Confidence 999999999999999886655442 11 1345689999999999999999 99999998765443
|
|
| >KOG0286|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-40 Score=276.37 Aligned_cols=277 Identities=20% Similarity=0.336 Sum_probs=245.3
Q ss_pred cccccCCcceeccccchhhhhhcccccceeeeecccccceeee---eecCeEEEEeCCCCCEEEEeeCCCcEEEEcCCCC
Q psy18231 120 LSKQRTHPLLFSLPRTITRILYELPKEWSIRVYRPLTVNRELF---VLSGLMHTRFPVDGSYCLTCGSDKKIKLWNPYRN 196 (540)
Q Consensus 120 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~---h~~~v~~v~~spdg~~lat~~~dg~i~iwd~~~~ 196 (540)
|+..-+.++.+.+.+... .+.+.+.|+.+.+|+..+.++... -...|..++|+|.|+++|.|+.|+...||++.+.
T Consensus 51 LkGH~~Ki~~~~ws~Dsr-~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~ 129 (343)
T KOG0286|consen 51 LKGHLNKIYAMDWSTDSR-RIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPLSTR 129 (343)
T ss_pred ecccccceeeeEecCCcC-eEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEEEecccc
Confidence 333333444444444434 445779999999999998776544 4477999999999999999999999999998855
Q ss_pred ------eeEEEeecCCcceeEEEEeeCCCeEEEeeCCCeEEEEEcCCCceeEeccccCCceeEEEECC-CCCEEEEecCC
Q psy18231 197 ------LLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNE-DSSVVISGSQD 269 (540)
Q Consensus 197 ------~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~~~d 269 (540)
...+.+.+|++.+.|+.|.+ ..+|+|+|.|.++.+||+++++.+..+.+|.+.|.+++++| +++.+++|+.|
T Consensus 130 d~~g~~~v~r~l~gHtgylScC~f~d-D~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD 208 (343)
T KOG0286|consen 130 DAEGNVRVSRELAGHTGYLSCCRFLD-DNHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCD 208 (343)
T ss_pred cccccceeeeeecCccceeEEEEEcC-CCceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCCeEEecccc
Confidence 45667899999999999997 55799999999999999999999999999999999999999 99999999999
Q ss_pred CcEEEEEecCCCCCCcchhhhhHhhhhcCCceeEEEEeecccccccccCceeeEEEeeeecccccceeeeeeccceeEEE
Q psy18231 270 NTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVL 349 (540)
Q Consensus 270 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (540)
+..++||++.+.
T Consensus 209 ~~aklWD~R~~~-------------------------------------------------------------------- 220 (343)
T KOG0286|consen 209 KSAKLWDVRSGQ-------------------------------------------------------------------- 220 (343)
T ss_pred cceeeeeccCcc--------------------------------------------------------------------
Confidence 999999999876
Q ss_pred eecccceecccccccccccchhhhhhcccccEEEEEecC--CeeEeeeCCCeEEEEeCCCCceEEeeeC----CceEEEE
Q psy18231 350 LDFLGSTQIGDVTPISIHNSCFQALKEARDSITSVHVSD--HEILTASLDCRIRRYDIRTGNLVTDYVG----EPIVDAC 423 (540)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~----~~i~~~~ 423 (540)
+.+.+.+|...|.++.|.| .-+++|+.|++.++||++..+.+..+.. .+|++++
T Consensus 221 --------------------c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~ 280 (343)
T KOG0286|consen 221 --------------------CVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSIICGITSVA 280 (343)
T ss_pred --------------------eeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCcccCCceeEE
Confidence 3448889999999999999 7799999999999999999998888875 4799999
Q ss_pred EecCCcEEEeecCCCeEEEEeccccchhhhhccCcCCcceEEEEecCCCCeEEEeeCCCcEEEEE
Q psy18231 424 FTRDCQCILTCSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQ 488 (540)
Q Consensus 424 ~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~s~~~~~l~s~s~dg~i~iwd 488 (540)
||..|++|.+|..|.++.+||.-.++.+..+.+|.+.|.++ ..+|||.-+++||+|.+++||.
T Consensus 281 FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvScl--~~s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 281 FSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGHENRVSCL--GVSPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred EcccccEEEeeecCCceeEeeccccceEEEeeccCCeeEEE--EECCCCcEEEecchhHheeecC
Confidence 99999999999999999999999999999999999999999 7899999999999999999994
|
|
| >KOG0265|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-40 Score=276.51 Aligned_cols=283 Identities=25% Similarity=0.405 Sum_probs=248.5
Q ss_pred eeeeeecCeEEEEeCCCCCEEEEeeCCCcEEEEcCC-CCeeEEEeecCCcceeEEEEeeCCCeEEEeeCCCeEEEEEcCC
Q psy18231 159 RELFVLSGLMHTRFPVDGSYCLTCGSDKKIKLWNPY-RNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTT 237 (540)
Q Consensus 159 ~~~~h~~~v~~v~~spdg~~lat~~~dg~i~iwd~~-~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~ 237 (540)
...+|.+.|..+.|+|+|.+||+|+.|..|.+|++. ..+....+++|.+.|..+.|.+|++.|++++.|.+|+.||.++
T Consensus 42 ~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~t 121 (338)
T KOG0265|consen 42 LLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAET 121 (338)
T ss_pred hcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEEeccc
Confidence 456899999999999999999999999999999954 4456778889999999999999999999999999999999999
Q ss_pred CceeEeccccCCceeEEEECCCC-CEEEEecCCCcEEEEEecCCCCCCcchhhhhHhhhhcCCceeEEEEeecccccccc
Q psy18231 238 GQPVRRWREHASKVTCVKFNEDS-SVVISGSQDNTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHLS 316 (540)
Q Consensus 238 ~~~~~~~~~h~~~v~~~~~~~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (540)
|+.++.+++|.+-|+.+.-+.-| ..+.+++.||++++||+++... +
T Consensus 122 G~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~--~------------------------------- 168 (338)
T KOG0265|consen 122 GKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEA--I------------------------------- 168 (338)
T ss_pred ceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccch--h-------------------------------
Confidence 99999999999999999854444 4677899999999999997652 1
Q ss_pred cCceeeEEEeeeecccccceeeeeeccceeEEEeecccceecccccccccccchhhhhhcccccEEEEEecC--CeeEee
Q psy18231 317 NGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEARDSITSVHVSD--HEILTA 394 (540)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~--~~l~~~ 394 (540)
.....+..++++.|.. ..+++|
T Consensus 169 --------------------------------------------------------~t~~~kyqltAv~f~d~s~qv~sg 192 (338)
T KOG0265|consen 169 --------------------------------------------------------KTFENKYQLTAVGFKDTSDQVISG 192 (338)
T ss_pred --------------------------------------------------------hccccceeEEEEEecccccceeec
Confidence 1112356788999987 889999
Q ss_pred eCCCeEEEEeCCCCceEEeeeC--CceEEEEEecCCcEEEeecCCCeEEEEecccc----chhhhhccCc--CCcceEEE
Q psy18231 395 SLDCRIRRYDIRTGNLVTDYVG--EPIVDACFTRDCQCILTCSTDECLRLFDKATG----ELLEEYKGHK--SGDFRIEC 466 (540)
Q Consensus 395 ~~dg~i~iwd~~~~~~~~~~~~--~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~----~~~~~~~~~~--~~v~~~~~ 466 (540)
+-|+.|++||++.+.....+.+ .+|+.+..+|+|.++.+-+.|.++++||++.. +++..+.+|. -....+.+
T Consensus 193 gIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~c 272 (338)
T KOG0265|consen 193 GIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKC 272 (338)
T ss_pred cccCceeeeccccCcceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhccee
Confidence 9999999999999999999987 58999999999999999999999999999754 3466676654 45677888
Q ss_pred EecCCCCeEEEeeCCCcEEEEEecCCcceeEEEecccceeeeEEEEcCCCcEEEeec-CCeeEEEEc
Q psy18231 467 CLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC-GNNVKLWTA 532 (540)
Q Consensus 467 ~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~-d~~i~iw~~ 532 (540)
+|+|++..+.+|+.|..+++||......+..+. +|.+.|++++|+|...+|.+++ |.+|.+=++
T Consensus 273 swsp~~~~i~ags~dr~vyvwd~~~r~~lyklp--Gh~gsvn~~~Fhp~e~iils~~sdk~i~lgei 337 (338)
T KOG0265|consen 273 SWSPNGTKITAGSADRFVYVWDTTSRRILYKLP--GHYGSVNEVDFHPTEPIILSCSSDKTIYLGEI 337 (338)
T ss_pred eccCCCCccccccccceEEEeecccccEEEEcC--CcceeEEEeeecCCCcEEEEeccCceeEeecc
Confidence 999999999999999999999988778888888 9999999999999999999999 999987443
|
|
| >KOG0281|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-41 Score=287.96 Aligned_cols=274 Identities=24% Similarity=0.380 Sum_probs=243.3
Q ss_pred eecCeEEEEeCCCCCEEEEeeCCCcEEEEcCCCCeeEEEeecCCcceeEEEEeeCCCeEEEeeCCCeEEEEEcCCCceeE
Q psy18231 163 VLSGLMHTRFPVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPVR 242 (540)
Q Consensus 163 h~~~v~~v~~spdg~~lat~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~ 242 (540)
....|.|+.+. ...+++|..|.+|+|||..+..++..+.||++.|.|+.|. .+.+++||+|.+|+|||+++|+++.
T Consensus 196 ~skgVYClQYD--D~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd--~rviisGSSDsTvrvWDv~tge~l~ 271 (499)
T KOG0281|consen 196 NSKGVYCLQYD--DEKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQYD--ERVIVSGSSDSTVRVWDVNTGEPLN 271 (499)
T ss_pred cCCceEEEEec--chhhhcccccCceEEeccccHHHHHhhhcCCCcEEeeecc--ceEEEecCCCceEEEEeccCCchhh
Confidence 55789999985 4478999999999999999999999999999999999994 6799999999999999999999999
Q ss_pred eccccCCceeEEEECCCCCEEEEecCCCcEEEEEecCCCCCCcchhhhhHhhhhcCCceeEEEEeecccccccccCceee
Q psy18231 243 RWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHLSNGLLTK 322 (540)
Q Consensus 243 ~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (540)
++-+|...|..+.|+. .++++++.|.++.+||+.....
T Consensus 272 tlihHceaVLhlrf~n--g~mvtcSkDrsiaVWdm~sps~---------------------------------------- 309 (499)
T KOG0281|consen 272 TLIHHCEAVLHLRFSN--GYMVTCSKDRSIAVWDMASPTD---------------------------------------- 309 (499)
T ss_pred HHhhhcceeEEEEEeC--CEEEEecCCceeEEEeccCchH----------------------------------------
Confidence 9999999999999974 5999999999999999977541
Q ss_pred EEEeeeecccccceeeeeeccceeEEEeecccceecccccccccccchhhhhhcccccEEEEEecCCeeEeeeCCCeEEE
Q psy18231 323 LVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEARDSITSVHVSDHEILTASLDCRIRR 402 (540)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~dg~i~i 402 (540)
..+.+.+.+|...|..+.|+.+++++++.|.+|++
T Consensus 310 ---------------------------------------------it~rrVLvGHrAaVNvVdfd~kyIVsASgDRTikv 344 (499)
T KOG0281|consen 310 ---------------------------------------------ITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKV 344 (499)
T ss_pred ---------------------------------------------HHHHHHHhhhhhheeeeccccceEEEecCCceEEE
Confidence 12455889999999999999999999999999999
Q ss_pred EeCCCCceEEeeeCC--ceEEEEEecCCcEEEeecCCCeEEEEeccccchhhhhccCcCCcceEEEEecCCCCeEEEeeC
Q psy18231 403 YDIRTGNLVTDYVGE--PIVDACFTRDCQCILTCSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSS 480 (540)
Q Consensus 403 wd~~~~~~~~~~~~~--~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~s~~~~~l~s~s~ 480 (540)
|++.+++.++.++++ .|.|+.+ .++++++|+.|.+|++||+..|.+++.+++|+.-|.++. | |.+.+++|+.
T Consensus 345 W~~st~efvRtl~gHkRGIAClQY--r~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciR--F--d~krIVSGaY 418 (499)
T KOG0281|consen 345 WSTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIR--F--DNKRIVSGAY 418 (499)
T ss_pred Eeccceeeehhhhcccccceehhc--cCeEEEecCCCceEEEEeccccHHHHHHhchHHhhhhee--e--cCceeeeccc
Confidence 999999999999986 5777666 789999999999999999999999999999999999884 4 4678999999
Q ss_pred CCcEEEEEecCCcce---------eEEEecccceeeeEEEEcCCCcEEEeec-CCeeEEEEcccccC
Q psy18231 481 DGKIYKWQLVDSSQI---------STLIHSVGKAVVNSLCSHPTRKHIMSAC-GNNVKLWTAEEDYG 537 (540)
Q Consensus 481 dg~i~iwd~~~~~~~---------~~~~~~~~~~~v~~l~~s~d~~~l~s~~-d~~i~iw~~~~~~~ 537 (540)
||+|+|||+.++... .++. .|.+.|..+.|. ...+++++ |.+|.|||+.++..
T Consensus 419 DGkikvWdl~aaldpra~~~~~Cl~~lv--~hsgRVFrLQFD--~fqIvsssHddtILiWdFl~~~~ 481 (499)
T KOG0281|consen 419 DGKIKVWDLQAALDPRAPASTLCLRTLV--EHSGRVFRLQFD--EFQIISSSHDDTILIWDFLNGPP 481 (499)
T ss_pred cceEEEEecccccCCcccccchHHHhhh--hccceeEEEeec--ceEEEeccCCCeEEEEEcCCCCc
Confidence 999999999876433 3344 689999999995 56788888 99999999987654
|
|
| >KOG0315|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-40 Score=267.20 Aligned_cols=288 Identities=19% Similarity=0.305 Sum_probs=243.1
Q ss_pred ccchhhhhhcccccceeeeecccccce--eeeee-cCeEEEEeCCCCCEEEEeeCCCcEEEEcCCCCe--eEEEeecCCc
Q psy18231 133 PRTITRILYELPKEWSIRVYRPLTVNR--ELFVL-SGLMHTRFPVDGSYCLTCGSDKKIKLWNPYRNL--LLKTYGGHAH 207 (540)
Q Consensus 133 ~~~~~~~~~~~~~~~~i~~~~~~~~~~--~~~h~-~~v~~v~~spdg~~lat~~~dg~i~iwd~~~~~--~~~~~~~h~~ 207 (540)
+.....++.+.+.|.+||+|+..++.. .+.|. +.|+.+...||++.||+++ ...||+||+.++. ++.++.+|+.
T Consensus 6 ~~d~~viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~-~qhvRlyD~~S~np~Pv~t~e~h~k 84 (311)
T KOG0315|consen 6 PTDDPVILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAG-NQHVRLYDLNSNNPNPVATFEGHTK 84 (311)
T ss_pred CCCCceEEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhcc-CCeeEEEEccCCCCCceeEEeccCC
Confidence 333467788999999999999999864 34455 5699999999999999988 5799999998764 6899999999
Q ss_pred ceeEEEEeeCCCeEEEeeCCCeEEEEEcCCCceeEeccccCCceeEEEECCCCCEEEEecCCCcEEEEEecCCCCCCcch
Q psy18231 208 EVNDATAACDSSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQV 287 (540)
Q Consensus 208 ~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 287 (540)
.|+++.|..+|++++|||+||+++|||++...+.+.+ .|.++|+++..+|+...|++|..+|.|++||+........
T Consensus 85 NVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~-~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~-- 161 (311)
T KOG0315|consen 85 NVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNY-QHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHE-- 161 (311)
T ss_pred ceEEEEEeecCeEEEecCCCceEEEEeccCcccchhc-cCCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccc--
Confidence 9999999999999999999999999999996666555 5789999999999999999999999999999988752111
Q ss_pred hhhhHhhhhcCCceeEEEEeecccccccccCceeeEEEeeeecccccceeeeeeccceeEEEeecccceecccccccccc
Q psy18231 288 RCLNEALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIH 367 (540)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (540)
T Consensus 162 -------------------------------------------------------------------------------- 161 (311)
T KOG0315|consen 162 -------------------------------------------------------------------------------- 161 (311)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cchhhhhhcccccEEEEEecC--CeeEeeeCCCeEEEEeCCCCceE------Eeee--CCceEEEEEecCCcEEEeecCC
Q psy18231 368 NSCFQALKEARDSITSVHVSD--HEILTASLDCRIRRYDIRTGNLV------TDYV--GEPIVDACFTRDCQCILTCSTD 437 (540)
Q Consensus 368 ~~~~~~~~~~~~~v~~l~~~~--~~l~~~~~dg~i~iwd~~~~~~~------~~~~--~~~i~~~~~sp~~~~l~~~~~d 437 (540)
........|.++...| .+++.+...|..++|++-..... .++. ...+..+.+|||+++|++++.|
T Consensus 162 -----liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssd 236 (311)
T KOG0315|consen 162 -----LIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSD 236 (311)
T ss_pred -----cCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCC
Confidence 1122335677887777 88888899999999999865432 3333 2568999999999999999999
Q ss_pred CeEEEEecccc-chhhhhccCcCCcceEEEEecCCCCeEEEeeCCCcEEEEEecCCcceeEEEecccceeeeEEEEc
Q psy18231 438 ECLRLFDKATG-ELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSH 513 (540)
Q Consensus 438 g~i~i~d~~~~-~~~~~~~~~~~~v~~~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s 513 (540)
.+++||+.++. +....+++|...++.. +||.||+||++|+.|+.+++|++..++.+.... +|.....+++..
T Consensus 237 ktv~iwn~~~~~kle~~l~gh~rWvWdc--~FS~dg~YlvTassd~~~rlW~~~~~k~v~qy~--gh~K~~vc~~ln 309 (311)
T KOG0315|consen 237 KTVKIWNTDDFFKLELVLTGHQRWVWDC--AFSADGEYLVTASSDHTARLWDLSAGKEVRQYQ--GHHKAAVCVALN 309 (311)
T ss_pred ceEEEEecCCceeeEEEeecCCceEEee--eeccCccEEEecCCCCceeecccccCceeeecC--CcccccEEEEee
Confidence 99999999887 6667788999887766 899999999999999999999999999999988 787777777653
|
|
| >KOG0293|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-40 Score=287.17 Aligned_cols=285 Identities=22% Similarity=0.381 Sum_probs=249.6
Q ss_pred eeeeecCeEEEEeCCCCCEEEEeeCCCcEEEEcCCCC---eeEEEeecCCcceeEEEEeeCCCeEEEeeCCCeEEEEEcC
Q psy18231 160 ELFVLSGLMHTRFPVDGSYCLTCGSDKKIKLWNPYRN---LLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVT 236 (540)
Q Consensus 160 ~~~h~~~v~~v~~spdg~~lat~~~dg~i~iwd~~~~---~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~ 236 (540)
...|++.|.-+.||++|+|||+++.|.+..+|++... +..+++.+|..+|..+.||||.++|++++.|..+.+||+.
T Consensus 220 l~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~ 299 (519)
T KOG0293|consen 220 LQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVD 299 (519)
T ss_pred HhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHheeeccCC
Confidence 3469999999999999999999999999999987654 4578889999999999999999999999999999999999
Q ss_pred CCceeEecc-ccCCceeEEEECCCCCEEEEecCCCcEEEEEecCCCCCCcchhhhhHhhhhcCCceeEEEEeeccccccc
Q psy18231 237 TGQPVRRWR-EHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHL 315 (540)
Q Consensus 237 ~~~~~~~~~-~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (540)
+|.....+. +|...+.+++|.|||..+++|+.|+++..||+.......
T Consensus 300 tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~~~~------------------------------- 348 (519)
T KOG0293|consen 300 TGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNILGN------------------------------- 348 (519)
T ss_pred cchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcchhhc-------------------------------
Confidence 999887664 356889999999999999999999999999997654111
Q ss_pred ccCceeeEEEeeeecccccceeeeeeccceeEEEeecccceecccccccccccchhhhhhc-ccccEEEEEecC--CeeE
Q psy18231 316 SNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKE-ARDSITSVHVSD--HEIL 392 (540)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~l~~~~--~~l~ 392 (540)
.++ ....|.+++..+ ..++
T Consensus 349 ----------------------------------------------------------W~gvr~~~v~dlait~Dgk~vl 370 (519)
T KOG0293|consen 349 ----------------------------------------------------------WEGVRDPKVHDLAITYDGKYVL 370 (519)
T ss_pred ----------------------------------------------------------ccccccceeEEEEEcCCCcEEE
Confidence 111 124577888776 8888
Q ss_pred eeeCCCeEEEEeCCCCceEEeee-CCceEEEEEecCCcEEEeecCCCeEEEEeccccchhhhhccCcCCcceEEEEecCC
Q psy18231 393 TASLDCRIRRYDIRTGNLVTDYV-GEPIVDACFTRDCQCILTCSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSK 471 (540)
Q Consensus 393 ~~~~dg~i~iwd~~~~~~~~~~~-~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~s~~ 471 (540)
+.+.|..|++|+.++......+. .++|++.++|.|++++++.-.+..+++||++..+.++.+.+|...-..+.-||.-.
T Consensus 371 ~v~~d~~i~l~~~e~~~dr~lise~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~ 450 (519)
T KOG0293|consen 371 LVTVDKKIRLYNREARVDRGLISEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGG 450 (519)
T ss_pred EEecccceeeechhhhhhhccccccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccCCC
Confidence 88899999999999877664443 47999999999999999999999999999999999999999999888888888754
Q ss_pred -CCeEEEeeCCCcEEEEEecCCcceeEEEecccceeeeEEEEcCCC-cEEEeec-CCeeEEEEcccc
Q psy18231 472 -DSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTR-KHIMSAC-GNNVKLWTAEED 535 (540)
Q Consensus 472 -~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~-~~l~s~~-d~~i~iw~~~~~ 535 (540)
..++++||+|+.|+||+..+++++.++. +|...|++++|+|.. .++|+|+ ||+|+||.....
T Consensus 451 ~~~fiaSGSED~kvyIWhr~sgkll~~Ls--GHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~~~~ 515 (519)
T KOG0293|consen 451 NDKFIASGSEDSKVYIWHRISGKLLAVLS--GHSKTVNCVSWNPADPEMFASASDDGTIRIWGPSDN 515 (519)
T ss_pred CcceEEecCCCceEEEEEccCCceeEeec--CCcceeeEEecCCCCHHHhhccCCCCeEEEecCCcc
Confidence 4789999999999999999999999999 999999999999965 6778888 999999998754
|
|
| >KOG0279|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-39 Score=268.56 Aligned_cols=265 Identities=20% Similarity=0.351 Sum_probs=228.8
Q ss_pred hhhhhhcccccceeeeeccccc--------ceeeeeecCeEEEEeCCCCCEEEEeeCCCcEEEEcCCCCeeEEEeecCCc
Q psy18231 136 ITRILYELPKEWSIRVYRPLTV--------NRELFVLSGLMHTRFPVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAH 207 (540)
Q Consensus 136 ~~~~~~~~~~~~~i~~~~~~~~--------~~~~~h~~~v~~v~~spdg~~lat~~~dg~i~iwd~~~~~~~~~~~~h~~ 207 (540)
...++++.+.|.++-+|+.... .+..+|...|..+..++||++.++++.|+++++||+.+++....|.+|..
T Consensus 27 ~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~ 106 (315)
T KOG0279|consen 27 NSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATGESTRRFVGHTK 106 (315)
T ss_pred CCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEeccccceEEEEEecCCcEEEEEEecCC
Confidence 3556667777888888876553 34567999999999999999999999999999999999999999999999
Q ss_pred ceeEEEEeeCCCeEEEeeCCCeEEEEEcCCCceeEecccc--CCceeEEEECCC--CCEEEEecCCCcEEEEEecCCCCC
Q psy18231 208 EVNDATAACDSSQIASGASDKSVILWEVTTGQPVRRWREH--ASKVTCVKFNED--SSVVISGSQDNTVMMWDVKSRSHH 283 (540)
Q Consensus 208 ~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h--~~~v~~~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~ 283 (540)
.|.+++|+||.+.+++|+.|.+|++|++.. .+..++..+ .+.|+|+.|+|+ ..+|+++|.|++|++||+++.+.
T Consensus 107 dVlsva~s~dn~qivSGSrDkTiklwnt~g-~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l- 184 (315)
T KOG0279|consen 107 DVLSVAFSTDNRQIVSGSRDKTIKLWNTLG-VCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQL- 184 (315)
T ss_pred ceEEEEecCCCceeecCCCcceeeeeeecc-cEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcch-
Confidence 999999999999999999999999999854 444444433 789999999997 67999999999999999988762
Q ss_pred CcchhhhhHhhhhcCCceeEEEEeecccccccccCceeeEEEeeeecccccceeeeeeccceeEEEeecccceecccccc
Q psy18231 284 PIQVRCLNEALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTP 363 (540)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (540)
T Consensus 185 -------------------------------------------------------------------------------- 184 (315)
T KOG0279|consen 185 -------------------------------------------------------------------------------- 184 (315)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccchhhhhhcccccEEEEEecC--CeeEeeeCCCeEEEEeCCCCceEEeeeC-CceEEEEEecCCcEEEeecCCCeE
Q psy18231 364 ISIHNSCFQALKEARDSITSVHVSD--HEILTASLDCRIRRYDIRTGNLVTDYVG-EPIVDACFTRDCQCILTCSTDECL 440 (540)
Q Consensus 364 ~~~~~~~~~~~~~~~~~v~~l~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~i~~~~~sp~~~~l~~~~~dg~i 440 (540)
...+.+|.+.++.++++| .+.++|+.||.+.+||++.++.+..+.. ..|.+++|+|+.-.|+.+. +..|
T Consensus 185 -------~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl~a~~~v~sl~fspnrywL~~at-~~sI 256 (315)
T KOG0279|consen 185 -------RTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSLEAFDIVNSLCFSPNRYWLCAAT-ATSI 256 (315)
T ss_pred -------hhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEeccCCCeEeeEEecCCceeEeecc-CCce
Confidence 226678999999999999 8899999999999999999999998876 6899999999977766655 4559
Q ss_pred EEEeccccchhhhhccC-------cCCcceEEEEecCCCCeEEEeeCCCcEEEEEec
Q psy18231 441 RLFDKATGELLEEYKGH-------KSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLV 490 (540)
Q Consensus 441 ~i~d~~~~~~~~~~~~~-------~~~v~~~~~~~s~~~~~l~s~s~dg~i~iwd~~ 490 (540)
+|||+.++..+..++.. .+.+.++.++|++||..|++|-.|+.|++|.+.
T Consensus 257 kIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 257 KIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQVA 313 (315)
T ss_pred EEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeecCCcEEEEEee
Confidence 99999999888776532 235678889999999999999999999999875
|
|
| >KOG0273|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-40 Score=290.49 Aligned_cols=284 Identities=17% Similarity=0.311 Sum_probs=248.5
Q ss_pred eeeeeecCeEEEEeCCCCC-EEEEeeCCCcEEEEcCCCC----eeEEEee----------cCCcceeEEEEeeCCCeEEE
Q psy18231 159 RELFVLSGLMHTRFPVDGS-YCLTCGSDKKIKLWNPYRN----LLLKTYG----------GHAHEVNDATAACDSSQIAS 223 (540)
Q Consensus 159 ~~~~h~~~v~~v~~spdg~-~lat~~~dg~i~iwd~~~~----~~~~~~~----------~h~~~v~~l~~sp~~~~l~s 223 (540)
+...|+.+|.+.+|+|-.. .+++|+.|.+.++|++... .....|+ .....|++++|+.+|.+||+
T Consensus 173 kvl~~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~~Lat 252 (524)
T KOG0273|consen 173 KVLRHESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGTLLAT 252 (524)
T ss_pred eeccCCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCCCeEEE
Confidence 4455999999999999666 8999999999999998741 1111111 12467999999999999999
Q ss_pred eeCCCeEEEEEcCCCceeEeccccCCceeEEEECCCCCEEEEecCCCcEEEEEecCCCCCCcchhhhhHhhhhcCCceeE
Q psy18231 224 GASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQVRCLNEALKEARDSITS 303 (540)
Q Consensus 224 ~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (540)
|+.||.++||+. .|..+.++..|.++|.++.|+..|++|++++.||++.+||..++...
T Consensus 253 G~~~G~~riw~~-~G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~-------------------- 311 (524)
T KOG0273|consen 253 GSEDGEARIWNK-DGNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVK-------------------- 311 (524)
T ss_pred eecCcEEEEEec-CchhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEE--------------------
Confidence 999999999996 78888899999999999999999999999999999999999777521
Q ss_pred EEEeecccccccccCceeeEEEeeeecccccceeeeeeccceeEEEeecccceecccccccccccchhhhhhcccccEEE
Q psy18231 304 VHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEARDSITS 383 (540)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 383 (540)
+.+..|..+-..
T Consensus 312 --------------------------------------------------------------------q~f~~~s~~~lD 323 (524)
T KOG0273|consen 312 --------------------------------------------------------------------QQFEFHSAPALD 323 (524)
T ss_pred --------------------------------------------------------------------EeeeeccCCccc
Confidence 133345555567
Q ss_pred EEecC-CeeEeeeCCCeEEEEeCCCCceEEeeeC--CceEEEEEecCCcEEEeecCCCeEEEEeccccchhhhhccCcCC
Q psy18231 384 VHVSD-HEILTASLDCRIRRYDIRTGNLVTDYVG--EPIVDACFTRDCQCILTCSTDECLRLFDKATGELLEEYKGHKSG 460 (540)
Q Consensus 384 l~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~--~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~ 460 (540)
+.|-. ..+++++.|+.|+++.+....++.++.+ ++|.++.|.|.|.+|++++.|++++||++........+.+|...
T Consensus 324 VdW~~~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hske 403 (524)
T KOG0273|consen 324 VDWQSNDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQAHSKE 403 (524)
T ss_pred eEEecCceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCCcchhhhhhhccc
Confidence 77866 8899999999999999999899888876 58999999999999999999999999999999999999999999
Q ss_pred cceEEEEecCCC---------CeEEEeeCCCcEEEEEecCCcceeEEEecccceeeeEEEEcCCCcEEEeec-CCeeEEE
Q psy18231 461 DFRIECCLDSKD---------SQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC-GNNVKLW 530 (540)
Q Consensus 461 v~~~~~~~s~~~---------~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~-d~~i~iw 530 (540)
|+.+ .|+|+| ..+++++.|++|++||+..+.++.++. .|..+|.+++|||+|+++|+|+ ||.|.+|
T Consensus 404 i~t~--~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~--kH~~pVysvafS~~g~ylAsGs~dg~V~iw 479 (524)
T KOG0273|consen 404 IYTI--KWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLM--KHQEPVYSVAFSPNGRYLASGSLDGCVHIW 479 (524)
T ss_pred eeeE--eecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeec--cCCCceEEEEecCCCcEEEecCCCCeeEec
Confidence 9888 677765 369999999999999999999999998 8999999999999999999999 9999999
Q ss_pred Ecccc
Q psy18231 531 TAEED 535 (540)
Q Consensus 531 ~~~~~ 535 (540)
+.+.+
T Consensus 480 s~~~~ 484 (524)
T KOG0273|consen 480 STKTG 484 (524)
T ss_pred cccch
Confidence 98865
|
|
| >KOG0645|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-39 Score=264.61 Aligned_cols=282 Identities=20% Similarity=0.342 Sum_probs=235.1
Q ss_pred ceeeeeecCeEEEEeCCC-CCEEEEeeCCCcEEEEcCCC---CeeEEEe-ecCCcceeEEEEeeCCCeEEEeeCCCeEEE
Q psy18231 158 NRELFVLSGLMHTRFPVD-GSYCLTCGSDKKIKLWNPYR---NLLLKTY-GGHAHEVNDATAACDSSQIASGASDKSVIL 232 (540)
Q Consensus 158 ~~~~~h~~~v~~v~~spd-g~~lat~~~dg~i~iwd~~~---~~~~~~~-~~h~~~v~~l~~sp~~~~l~s~s~dg~i~i 232 (540)
....+|.+.+..++|+|- |..||+++.|..|++|+... -.+...+ .+|+..|.+++|+|.|++|+++|.|.++.|
T Consensus 8 ~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~I 87 (312)
T KOG0645|consen 8 QKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVVI 87 (312)
T ss_pred EeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceEEE
Confidence 345679999999999998 99999999999999999874 2344334 469999999999999999999999999999
Q ss_pred EEcCCC--ceeEeccccCCceeEEEECCCCCEEEEecCCCcEEEEEecCCCCCCcchhhhhHhhhhcCCceeEEEEeecc
Q psy18231 233 WEVTTG--QPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKS 310 (540)
Q Consensus 233 wd~~~~--~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (540)
|.-..+ +++.++++|...|.+++|+++|++||++++|++|.||.+.....
T Consensus 88 w~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddE---------------------------- 139 (312)
T KOG0645|consen 88 WKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDE---------------------------- 139 (312)
T ss_pred eecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCc----------------------------
Confidence 987654 67888999999999999999999999999999999999985542
Q ss_pred cccccccCceeeEEEeeeecccccceeeeeeccceeEEEeecccceecccccccccccchhhhhhcccccEEEEEecC--
Q psy18231 311 TKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEARDSITSVHVSD-- 388 (540)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~-- 388 (540)
..+...+.+|...|..+.|+|
T Consensus 140 ---------------------------------------------------------fec~aVL~~HtqDVK~V~WHPt~ 162 (312)
T KOG0645|consen 140 ---------------------------------------------------------FECIAVLQEHTQDVKHVIWHPTE 162 (312)
T ss_pred ---------------------------------------------------------EEEEeeeccccccccEEEEcCCc
Confidence 112337889999999999999
Q ss_pred CeeEeeeCCCeEEEEeCC---CCceEEeeeCC--ceEEEEEecCCcEEEeecCCCeEEEEeccccchhhhhccCcCCcce
Q psy18231 389 HEILTASLDCRIRRYDIR---TGNLVTDYVGE--PIVDACFTRDCQCILTCSTDECLRLFDKATGELLEEYKGHKSGDFR 463 (540)
Q Consensus 389 ~~l~~~~~dg~i~iwd~~---~~~~~~~~~~~--~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~ 463 (540)
.+|++++.|.+|++|+-. .-.++.++.++ .|.+++|+|.|..|++++.|++++||-..+.- -..|...++.
T Consensus 163 dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~~----~~~~sr~~Y~ 238 (312)
T KOG0645|consen 163 DLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTDL----SGMHSRALYD 238 (312)
T ss_pred ceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeeccCc----chhcccceEe
Confidence 999999999999999876 33578888774 79999999999999999999999999865221 1236677777
Q ss_pred EEEEecCCCCeEEEeeCCCcEEEEEecCC------cceeEEEecccceeeeEEEEcCC-CcEEEeec-CCeeEEEEcc
Q psy18231 464 IECCLDSKDSQIFCGSSDGKIYKWQLVDS------SQISTLIHSVGKAVVNSLCSHPT-RKHIMSAC-GNNVKLWTAE 533 (540)
Q Consensus 464 ~~~~~s~~~~~l~s~s~dg~i~iwd~~~~------~~~~~~~~~~~~~~v~~l~~s~d-~~~l~s~~-d~~i~iw~~~ 533 (540)
+ .|. ...|++++.|+.|++|.-... +.+... ...|...|++++|.|. ..+|++++ ||.|++|.+.
T Consensus 239 v--~W~--~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~-~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 239 V--PWD--NGVIASGGGDDAIRLFKESDSPDEPSWNLLAKK-EGAHEVDVNSVQWNPKVSNRLASGGDDGIVNFWELE 311 (312)
T ss_pred e--eec--ccceEeccCCCEEEEEEecCCCCCchHHHHHhh-hcccccccceEEEcCCCCCceeecCCCceEEEEEec
Confidence 7 555 458999999999999986543 112211 2278889999999995 67899999 9999999975
|
|
| >KOG0282|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-40 Score=295.69 Aligned_cols=281 Identities=21% Similarity=0.388 Sum_probs=256.0
Q ss_pred eeeeecCeEEEEeCC-CCCEEEEeeCCCcEEEEcCCC-CeeEEEeecCCcceeEEEEeeCCCeEEEeeCCCeEEEEEcCC
Q psy18231 160 ELFVLSGLMHTRFPV-DGSYCLTCGSDKKIKLWNPYR-NLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTT 237 (540)
Q Consensus 160 ~~~h~~~v~~v~~sp-dg~~lat~~~dg~i~iwd~~~-~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~ 237 (540)
..+|+..|+++.|.| .+.+|++++.|+.|+||++-. +++++++.+|..+|.+++|+++|..++|+|.|+.|++||+++
T Consensus 210 ~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtET 289 (503)
T KOG0282|consen 210 LSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTET 289 (503)
T ss_pred ccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceeeeeecccc
Confidence 357999999999999 899999999999999999876 899999999999999999999999999999999999999999
Q ss_pred CceeEeccccCCceeEEEECCCC-CEEEEecCCCcEEEEEecCCCCCCcchhhhhHhhhhcCCceeEEEEeecccccccc
Q psy18231 238 GQPVRRWREHASKVTCVKFNEDS-SVVISGSQDNTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHLS 316 (540)
Q Consensus 238 ~~~~~~~~~h~~~v~~~~~~~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (540)
|+++..+. -...++|+.|+|++ +.+++|+.|+.|+.||+++++
T Consensus 290 G~~~~~f~-~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~k----------------------------------- 333 (503)
T KOG0282|consen 290 GQVLSRFH-LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGK----------------------------------- 333 (503)
T ss_pred ceEEEEEe-cCCCceeeecCCCCCcEEEEecCCCcEEEEeccchH-----------------------------------
Confidence 99998884 35678999999988 889999999999999999987
Q ss_pred cCceeeEEEeeeecccccceeeeeeccceeEEEeecccceecccccccccccchhhhhhcccccEEEEEecC--CeeEee
Q psy18231 317 NGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEARDSITSVHVSD--HEILTA 394 (540)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~--~~l~~~ 394 (540)
.++....|-+.|..+.|-+ .+++++
T Consensus 334 -----------------------------------------------------vvqeYd~hLg~i~~i~F~~~g~rFiss 360 (503)
T KOG0282|consen 334 -----------------------------------------------------VVQEYDRHLGAILDITFVDEGRRFISS 360 (503)
T ss_pred -----------------------------------------------------HHHHHHhhhhheeeeEEccCCceEeee
Confidence 3457788899999999988 899999
Q ss_pred eCCCeEEEEeCCCCceEEeee---CCceEEEEEecCCcEEEeecCCCeEEEEecccc---chhhhhccCcCCcceEEEEe
Q psy18231 395 SLDCRIRRYDIRTGNLVTDYV---GEPIVDACFTRDCQCILTCSTDECLRLFDKATG---ELLEEYKGHKSGDFRIECCL 468 (540)
Q Consensus 395 ~~dg~i~iwd~~~~~~~~~~~---~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~---~~~~~~~~~~~~v~~~~~~~ 468 (540)
+.|++++||+.+.+..+.... .+...++..+|+++++++-+.|+.|.+|.+... .....|++|...-+.+.+.|
T Consensus 361 SDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~f 440 (503)
T KOG0282|consen 361 SDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDF 440 (503)
T ss_pred ccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEE
Confidence 999999999999887765554 378889999999999999999999999986543 44578999999889999999
Q ss_pred cCCCCeEEEeeCCCcEEEEEecCCcceeEEEecccceeeeEEEEcCCC-cEEEeec-CCeeEEEE
Q psy18231 469 DSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTR-KHIMSAC-GNNVKLWT 531 (540)
Q Consensus 469 s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~-~~l~s~~-d~~i~iw~ 531 (540)
||||++|++|+.||.+.+||.++-+.+..++ .|.+++..+.|+|.. ..+|+++ ||.|++|+
T Consensus 441 SpDG~~l~SGdsdG~v~~wdwkt~kl~~~lk--ah~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 441 SPDGRTLCSGDSDGKVNFWDWKTTKLVSKLK--AHDQPCIGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred cCCCCeEEeecCCccEEEeechhhhhhhccc--cCCcceEEEEecCCCcceeEecccCceeEecC
Confidence 9999999999999999999999999999999 899999999999975 5788888 99999996
|
|
| >KOG0266|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-39 Score=314.09 Aligned_cols=281 Identities=30% Similarity=0.542 Sum_probs=255.5
Q ss_pred eecCeEEEEeCCCCCEEEEeeCCCcEEEEcCCCCe--eEEEeecCCcceeEEEEeeCCCeEEEeeCCCeEEEEEc-CCCc
Q psy18231 163 VLSGLMHTRFPVDGSYCLTCGSDKKIKLWNPYRNL--LLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEV-TTGQ 239 (540)
Q Consensus 163 h~~~v~~v~~spdg~~lat~~~dg~i~iwd~~~~~--~~~~~~~h~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~-~~~~ 239 (540)
|...|.++.|+++|+++++++.++.+++|+..+.+ .+..+.+|...|.+++|+|+++++++++.|++|+|||+ ..+.
T Consensus 158 ~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~ 237 (456)
T KOG0266|consen 158 ECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGR 237 (456)
T ss_pred ccCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEeeccCCCe
Confidence 57899999999999999999999999999998777 77888899999999999999999999999999999999 5568
Q ss_pred eeEeccccCCceeEEEECCCCCEEEEecCCCcEEEEEecCCCCCCcchhhhhHhhhhcCCceeEEEEeecccccccccCc
Q psy18231 240 PVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHLSNGL 319 (540)
Q Consensus 240 ~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (540)
.++++++|...|++++|+|+++++++|+.|++|++||+++++
T Consensus 238 ~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~-------------------------------------- 279 (456)
T KOG0266|consen 238 NLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGE-------------------------------------- 279 (456)
T ss_pred EEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCe--------------------------------------
Confidence 999999999999999999999999999999999999999866
Q ss_pred eeeEEEeeeecccccceeeeeeccceeEEEeecccceecccccccccccchhhhhhcccccEEEEEecC--CeeEeeeCC
Q psy18231 320 LTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEARDSITSVHVSD--HEILTASLD 397 (540)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~--~~l~~~~~d 397 (540)
+...+.+|.+.|++++|++ +.+++++.|
T Consensus 280 --------------------------------------------------~~~~l~~hs~~is~~~f~~d~~~l~s~s~d 309 (456)
T KOG0266|consen 280 --------------------------------------------------CVRKLKGHSDGISGLAFSPDGNLLVSASYD 309 (456)
T ss_pred --------------------------------------------------EEEeeeccCCceEEEEECCCCCEEEEcCCC
Confidence 2337789999999999998 889999999
Q ss_pred CeEEEEeCCCCc--eEEeeeC---C-ceEEEEEecCCcEEEeecCCCeEEEEeccccchhhhhccCcCCcceE-EEEecC
Q psy18231 398 CRIRRYDIRTGN--LVTDYVG---E-PIVDACFTRDCQCILTCSTDECLRLFDKATGELLEEYKGHKSGDFRI-ECCLDS 470 (540)
Q Consensus 398 g~i~iwd~~~~~--~~~~~~~---~-~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~-~~~~s~ 470 (540)
+.|++||+.++. ++..+.+ . ++++++|+|+++++++++.|+.+++||+..+..+..+.+|...+.++ ....++
T Consensus 310 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (456)
T KOG0266|consen 310 GTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLST 389 (456)
T ss_pred ccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCCcceeEecccccC
Confidence 999999999999 4555543 3 68999999999999999999999999999999999999998864333 334578
Q ss_pred CCCeEEEeeCCCcEEEEEecCCcceeEEEeccc-ceeeeEEEEcCCCcEEEeec---CCeeEEEEcc
Q psy18231 471 KDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVG-KAVVNSLCSHPTRKHIMSAC---GNNVKLWTAE 533 (540)
Q Consensus 471 ~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~-~~~v~~l~~s~d~~~l~s~~---d~~i~iw~~~ 533 (540)
.+.++++|+.|+.|++||+.++..+..+. +| ...+..+.++|...++++++ |+.+++|..+
T Consensus 390 ~~~~i~sg~~d~~v~~~~~~s~~~~~~l~--~h~~~~~~~~~~~~~~~~~~s~s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 390 GGKLIYSGSEDGSVYVWDSSSGGILQRLE--GHSKAAVSDLSSHPTENLIASSSFEGDGLIRLWKYD 454 (456)
T ss_pred CCCeEEEEeCCceEEEEeCCccchhhhhc--CCCCCceeccccCCCcCeeeecCcCCCceEEEecCC
Confidence 89999999999999999999999999998 88 89999999999999999987 8899999865
|
|
| >KOG0263|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-39 Score=303.49 Aligned_cols=266 Identities=20% Similarity=0.325 Sum_probs=236.7
Q ss_pred cCeEEEEeCCCCCEEEEeeCCCcEEEEcCCCC-------------------------------eeEEEeecCCcceeEEE
Q psy18231 165 SGLMHTRFPVDGSYCLTCGSDKKIKLWNPYRN-------------------------------LLLKTYGGHAHEVNDAT 213 (540)
Q Consensus 165 ~~v~~v~~spdg~~lat~~~dg~i~iwd~~~~-------------------------------~~~~~~~~h~~~v~~l~ 213 (540)
..++|..|++|+..||.|..|..|++|.+... ....++.+|.++|+.+.
T Consensus 379 ~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPVyg~s 458 (707)
T KOG0263|consen 379 QGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGPVYGCS 458 (707)
T ss_pred CcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCCceeeee
Confidence 57999999999999999999999999987631 12355789999999999
Q ss_pred EeeCCCeEEEeeCCCeEEEEEcCCCceeEeccccCCceeEEEECCCCCEEEEecCCCcEEEEEecCCCCCCcchhhhhHh
Q psy18231 214 AACDSSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQVRCLNEA 293 (540)
Q Consensus 214 ~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 293 (540)
|+|+.++|+++|.|++||+|.+.+..++..+++|..+|+.+.|+|.|-++||+|.|++-++|......
T Consensus 459 FsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~------------ 526 (707)
T KOG0263|consen 459 FSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHNK------------ 526 (707)
T ss_pred ecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeecccCC------------
Confidence 99999999999999999999999999999999999999999999999999999999999999987755
Q ss_pred hhhcCCceeEEEEeecccccccccCceeeEEEeeeecccccceeeeeeccceeEEEeecccceecccccccccccchhhh
Q psy18231 294 LKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQA 373 (540)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (540)
+++.
T Consensus 527 ----------------------------------------------------------------------------PlRi 530 (707)
T KOG0263|consen 527 ----------------------------------------------------------------------------PLRI 530 (707)
T ss_pred ----------------------------------------------------------------------------chhh
Confidence 3457
Q ss_pred hhcccccEEEEEecC--CeeEeeeCCCeEEEEeCCCCceEEeeeC--CceEEEEEecCCcEEEeecCCCeEEEEeccccc
Q psy18231 374 LKEARDSITSVHVSD--HEILTASLDCRIRRYDIRTGNLVTDYVG--EPIVDACFTRDCQCILTCSTDECLRLFDKATGE 449 (540)
Q Consensus 374 ~~~~~~~v~~l~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~--~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~ 449 (540)
+.+|...|.|+.|+| .++++||.|.++|+||+.+|..++.+.| .+|.+++|||+|++|++|+.||.|.+||+.+++
T Consensus 531 faghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~ 610 (707)
T KOG0263|consen 531 FAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANGS 610 (707)
T ss_pred hcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecccCCcEEEEEcCCCc
Confidence 889999999999999 9999999999999999999999999988 489999999999999999999999999999999
Q ss_pred hhhhhccCcCCcceEEEEecCCCCeEEEeeCCCcEEEEEecCCc------------------------ceeEEEecccce
Q psy18231 450 LLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSS------------------------QISTLIHSVGKA 505 (540)
Q Consensus 450 ~~~~~~~~~~~v~~~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~------------------------~~~~~~~~~~~~ 505 (540)
.+..+.+|++.+.++ .|+.+|..||+|+.|++|++||+.... .+..+. ....
T Consensus 611 ~v~~l~~Ht~ti~Sl--sFS~dg~vLasgg~DnsV~lWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llgs~~--tK~t 686 (707)
T KOG0263|consen 611 LVKQLKGHTGTIYSL--SFSRDGNVLASGGADNSVRLWDLTKVIELLNLGHISTSNSAITQENNASSLLLGSFY--TKNT 686 (707)
T ss_pred chhhhhcccCceeEE--EEecCCCEEEecCCCCeEEEEEchhhcccccccccccccccccccCCCCcceeeeee--ecCc
Confidence 999999999999888 899999999999999999999986432 233333 3455
Q ss_pred eeeEEEEcCCCcEEEee
Q psy18231 506 VVNSLCSHPTRKHIMSA 522 (540)
Q Consensus 506 ~v~~l~~s~d~~~l~s~ 522 (540)
+|..+.|....-.|+.|
T Consensus 687 pv~~l~FtrrNl~L~~g 703 (707)
T KOG0263|consen 687 PVVGLHFTRRNLLLAVG 703 (707)
T ss_pred eEEEEEEeccceeEEec
Confidence 78888887655444444
|
|
| >KOG0313|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-38 Score=271.51 Aligned_cols=315 Identities=18% Similarity=0.270 Sum_probs=256.5
Q ss_pred eeeecccccceeeeeecCeEEEEeCCCCCEEEEeeCCCcEEEEcCCCCeeEEEeecCCcceeEEEEeeCCC---eEEEee
Q psy18231 149 IRVYRPLTVNRELFVLSGLMHTRFPVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSS---QIASGA 225 (540)
Q Consensus 149 i~~~~~~~~~~~~~h~~~v~~v~~spdg~~lat~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~---~l~s~s 225 (540)
++-+.+......+.|.+.|.++... +++|++|++||.+++||. .|+..+.+.+|.++|.+++|.-... .+++++
T Consensus 90 v~~~~aP~pl~~~~hdDWVSsv~~~--~~~IltgsYDg~~riWd~-~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas 166 (423)
T KOG0313|consen 90 VEAITAPKPLQCFLHDDWVSSVKGA--SKWILTGSYDGTSRIWDL-KGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSAS 166 (423)
T ss_pred EEecCCCCccccccchhhhhhhccc--CceEEEeecCCeeEEEec-CCceEEEEecCCcceeeeEEEecCCccceEEEec
Confidence 3334455556677899999999988 779999999999999995 7899999999999999998865333 599999
Q ss_pred CCCeEEEEEcCCCcee----EeccccCCceeEEEECCCCCEEEEecCCCcEEEEEecCCCCCCcchhhhhHhhhhcCCce
Q psy18231 226 SDKSVILWEVTTGQPV----RRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQVRCLNEALKEARDSI 301 (540)
Q Consensus 226 ~dg~i~iwd~~~~~~~----~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (540)
.|.++++|.++.++.. ..-++|...|.++...+++..+++|+.|.+|++|+..+............+..
T Consensus 167 ~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk------- 239 (423)
T KOG0313|consen 167 MDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRK------- 239 (423)
T ss_pred CCceEEEEEecCchhhhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhh-------
Confidence 9999999999887533 33459999999999999999999999999999999444332111100000000
Q ss_pred eEEEEeecccccccccCceeeEEEeeeecccccceeeeeeccceeEEEeecccceecccccccccccchhhhhhcccccE
Q psy18231 302 TSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEARDSI 381 (540)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 381 (540)
............++..+.+|..+|
T Consensus 240 --------------------------------------------------------~~~~~~~~~~r~P~vtl~GHt~~V 263 (423)
T KOG0313|consen 240 --------------------------------------------------------KQKREKEGGTRTPLVTLEGHTEPV 263 (423)
T ss_pred --------------------------------------------------------hhhhhhcccccCceEEecccccce
Confidence 000000011122344788999999
Q ss_pred EEEEecC-CeeEeeeCCCeEEEEeCCCCceEEeeeC-CceEEEEEecCCcEEEeecCCCeEEEEeccccc---hhhhhcc
Q psy18231 382 TSVHVSD-HEILTASLDCRIRRYDIRTGNLVTDYVG-EPIVDACFTRDCQCILTCSTDECLRLFDKATGE---LLEEYKG 456 (540)
Q Consensus 382 ~~l~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~---~~~~~~~ 456 (540)
.++.|++ ..+.+++.|.+|+.||+.++..+.++.+ ..+.++.++|..++|++|+.|..+++||.+++. ...+|.+
T Consensus 264 s~V~w~d~~v~yS~SwDHTIk~WDletg~~~~~~~~~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~g 343 (423)
T KOG0313|consen 264 SSVVWSDATVIYSVSWDHTIKVWDLETGGLKSTLTTNKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIG 343 (423)
T ss_pred eeEEEcCCCceEeecccceEEEEEeecccceeeeecCcceeEeecccccceeeecCCCCceeecCCCCCCCceeEEeeec
Confidence 9999999 8899999999999999999999888876 689999999999999999999999999998763 4578899
Q ss_pred CcCCcceEEEEecCCCCe-EEEeeCCCcEEEEEecCCc-ceeEEEecccceeeeEEEEcCCCcEEEeec-CCeeEEEEcc
Q psy18231 457 HKSGDFRIECCLDSKDSQ-IFCGSSDGKIYKWQLVDSS-QISTLIHSVGKAVVNSLCSHPTRKHIMSAC-GNNVKLWTAE 533 (540)
Q Consensus 457 ~~~~v~~~~~~~s~~~~~-l~s~s~dg~i~iwd~~~~~-~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~-d~~i~iw~~~ 533 (540)
|.+.|..+ .|+|...+ |++|+.|+++++||+++.+ ++..+. +|...|.++.|. ++.+|++|+ |.+|+|+.-.
T Consensus 344 H~nwVssv--kwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~--~h~DKvl~vdW~-~~~~IvSGGaD~~l~i~~~~ 418 (423)
T KOG0313|consen 344 HKNWVSSV--KWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIA--GHNDKVLSVDWN-EGGLIVSGGADNKLRIFKGS 418 (423)
T ss_pred chhhhhhe--ecCCCCceEEEEEecCCeEEEEEeccCCCcceeec--cCCceEEEEecc-CCceEEeccCcceEEEeccc
Confidence 99998888 78888766 8999999999999999887 899998 999999999998 577999999 9999998754
Q ss_pred c
Q psy18231 534 E 534 (540)
Q Consensus 534 ~ 534 (540)
.
T Consensus 419 ~ 419 (423)
T KOG0313|consen 419 P 419 (423)
T ss_pred c
Confidence 3
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-37 Score=286.74 Aligned_cols=279 Identities=31% Similarity=0.516 Sum_probs=251.0
Q ss_pred eeeecCeEEEEeCCCCCEEEEeeCCCcEEEEcCCCCeeEEEeecCCcceeEEEEeeCCCeEEEeeCCCeEEEEEcCCCce
Q psy18231 161 LFVLSGLMHTRFPVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQP 240 (540)
Q Consensus 161 ~~h~~~v~~v~~spdg~~lat~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~ 240 (540)
.+|.++|++++|+|++++|++++.||.+++|++.+++....+..|...+..+.|+|+++++++++.||.|++||+.+++.
T Consensus 6 ~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~ 85 (289)
T cd00200 6 KGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGEC 85 (289)
T ss_pred cccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcccc
Confidence 37899999999999999999999999999999999988888999999999999999999999999999999999999888
Q ss_pred eEeccccCCceeEEEECCCCCEEEEecCCCcEEEEEecCCCCCCcchhhhhHhhhhcCCceeEEEEeecccccccccCce
Q psy18231 241 VRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHLSNGLL 320 (540)
Q Consensus 241 ~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (540)
+..+..|...+.++.|+++++++++++.||.|.+||+++.+.
T Consensus 86 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-------------------------------------- 127 (289)
T cd00200 86 VRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKC-------------------------------------- 127 (289)
T ss_pred eEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEE--------------------------------------
Confidence 888889999999999999988999888899999999985441
Q ss_pred eeEEEeeeecccccceeeeeeccceeEEEeecccceecccccccccccchhhhhhcccccEEEEEecC--CeeEeeeCCC
Q psy18231 321 TKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEARDSITSVHVSD--HEILTASLDC 398 (540)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~--~~l~~~~~dg 398 (540)
...+..|...+.++.++| .++++++.|+
T Consensus 128 --------------------------------------------------~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~ 157 (289)
T cd00200 128 --------------------------------------------------LTTLRGHTDWVNSVAFSPDGTFVASSSQDG 157 (289)
T ss_pred --------------------------------------------------EEEeccCCCcEEEEEEcCcCCEEEEEcCCC
Confidence 113336777899999999 5566666699
Q ss_pred eEEEEeCCCCceEEeeeC--CceEEEEEecCCcEEEeecCCCeEEEEeccccchhhhhccCcCCcceEEEEecCCCCeEE
Q psy18231 399 RIRRYDIRTGNLVTDYVG--EPIVDACFTRDCQCILTCSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIF 476 (540)
Q Consensus 399 ~i~iwd~~~~~~~~~~~~--~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~s~~~~~l~ 476 (540)
.|++||+++++.+..+.. ..+.++.|+|+++.+++++.|+.|++||+.+++.+..+..|...+..+ +|++++.+++
T Consensus 158 ~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~--~~~~~~~~~~ 235 (289)
T cd00200 158 TIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSV--AFSPDGYLLA 235 (289)
T ss_pred cEEEEEccccccceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCCceecchhhcCCceEEE--EEcCCCcEEE
Confidence 999999998888777765 479999999999999999999999999999999999998888888777 8999988899
Q ss_pred EeeCCCcEEEEEecCCcceeEEEecccceeeeEEEEcCCCcEEEeec-CCeeEEEE
Q psy18231 477 CGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC-GNNVKLWT 531 (540)
Q Consensus 477 s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~-d~~i~iw~ 531 (540)
+++.||.|++||+.+++....+. .|...|.+++|+|++++|++++ |+.|++|+
T Consensus 236 ~~~~~~~i~i~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 236 SGSEDGTIRVWDLRTGECVQTLS--GHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred EEcCCCcEEEEEcCCceeEEEcc--ccCCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence 99889999999999999888888 8889999999999999999999 99999996
|
|
| >KOG0291|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-37 Score=288.20 Aligned_cols=282 Identities=18% Similarity=0.325 Sum_probs=257.2
Q ss_pred cCeEEEEeCCCCCEEEEeeCCCcEEEEcCCCCeeEEEeecCCcceeEEEEeeCCCeEEEeeCC-CeEEEEEcCCCceeEe
Q psy18231 165 SGLMHTRFPVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASD-KSVILWEVTTGQPVRR 243 (540)
Q Consensus 165 ~~v~~v~~spdg~~lat~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~d-g~i~iwd~~~~~~~~~ 243 (540)
..|++.+|++..+.|++|-..|...+|++..-.+++.+.-...+|..++|+..|.+||.|+.. |.+.||++.+...+..
T Consensus 266 ~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlK 345 (893)
T KOG0291|consen 266 SKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLK 345 (893)
T ss_pred cceeeeeccCCceEEEEEecCCeeEEEecCCceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccceeee
Confidence 569999999999999999999999999999999999998888999999999999999998875 8999999999998888
Q ss_pred ccccCCceeEEEECCCCCEEEEecCCCcEEEEEecCCCCCCcchhhhhHhhhhcCCceeEEEEeecccccccccCceeeE
Q psy18231 244 WREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHLSNGLLTKL 323 (540)
Q Consensus 244 ~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (540)
.++|...+++++++|||+++++|+.||.|+|||..++-
T Consensus 346 QQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~Sgf------------------------------------------ 383 (893)
T KOG0291|consen 346 QQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGF------------------------------------------ 383 (893)
T ss_pred ccccccceeeEEECCCCcEEEeccCCCcEEEEeccCce------------------------------------------
Confidence 99999999999999999999999999999999987764
Q ss_pred EEeeeecccccceeeeeeccceeEEEeecccceecccccccccccchhhhhhcccccEEEEEecC--CeeEeeeCCCeEE
Q psy18231 324 VFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEARDSITSVHVSD--HEILTASLDCRIR 401 (540)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~--~~l~~~~~dg~i~ 401 (540)
|..++..|...|+.+.|+. +.+++.+.||+|+
T Consensus 384 ----------------------------------------------C~vTFteHts~Vt~v~f~~~g~~llssSLDGtVR 417 (893)
T KOG0291|consen 384 ----------------------------------------------CFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVR 417 (893)
T ss_pred ----------------------------------------------EEEEeccCCCceEEEEEEecCCEEEEeecCCeEE
Confidence 3447889999999999987 8899999999999
Q ss_pred EEeCCCCceEEeeeC---CceEEEEEecCCcEEEeecCCC-eEEEEeccccchhhhhccCcCCcceEEEEecCCCCeEEE
Q psy18231 402 RYDIRTGNLVTDYVG---EPIVDACFTRDCQCILTCSTDE-CLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFC 477 (540)
Q Consensus 402 iwd~~~~~~~~~~~~---~~i~~~~~sp~~~~l~~~~~dg-~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~s~~~~~l~s 477 (540)
.||+...+..+++.. -...|++..|.|.++.+|+.|. .|.+|++++|+.+-.+.+|.++|.++ +|+|++..|++
T Consensus 418 AwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l--~f~~~~~~LaS 495 (893)
T KOG0291|consen 418 AWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGL--SFSPDGSLLAS 495 (893)
T ss_pred eeeecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceee--EEccccCeEEe
Confidence 999999999888875 3577888899999999999875 59999999999999999999999988 89999999999
Q ss_pred eeCCCcEEEEEecCC-cceeEEEecccceeeeEEEEcCCCcEEEeec-CCeeEEEEcccccCCC
Q psy18231 478 GSSDGKIYKWQLVDS-SQISTLIHSVGKAVVNSLCSHPTRKHIMSAC-GNNVKLWTAEEDYGQG 539 (540)
Q Consensus 478 ~s~dg~i~iwd~~~~-~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~-d~~i~iw~~~~~~~~~ 539 (540)
+|+|.+|++||+-.. ..+.++. +...+..++|+|||+.|+++. ||.|.+||++....-|
T Consensus 496 ~SWDkTVRiW~if~s~~~vEtl~---i~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~~ 556 (893)
T KOG0291|consen 496 GSWDKTVRIWDIFSSSGTVETLE---IRSDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQVG 556 (893)
T ss_pred ccccceEEEEEeeccCceeeeEe---eccceeEEEEcCCCCeEEEEEecceEEEEEhhhceeec
Confidence 999999999998765 4455664 677899999999999999999 9999999998876543
|
|
| >KOG0263|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-39 Score=300.71 Aligned_cols=246 Identities=24% Similarity=0.345 Sum_probs=223.0
Q ss_pred EEEeecCCcceeEEEEeeCCCeEEEeeCCCeEEEEEcCCCc-------------------------------eeEecccc
Q psy18231 199 LKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQ-------------------------------PVRRWREH 247 (540)
Q Consensus 199 ~~~~~~h~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~-------------------------------~~~~~~~h 247 (540)
..++..-...++|..|++|+++||.|-.|..|++|.+...+ ...++.+|
T Consensus 371 ~YT~~nt~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH 450 (707)
T KOG0263|consen 371 MYTFHNTYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGH 450 (707)
T ss_pred EEEEEEcCCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecC
Confidence 34444456679999999999999999999999999986311 23346689
Q ss_pred CCceeEEEECCCCCEEEEecCCCcEEEEEecCCCCCCcchhhhhHhhhhcCCceeEEEEeecccccccccCceeeEEEee
Q psy18231 248 ASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAF 327 (540)
Q Consensus 248 ~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (540)
.++|....|+|+.++|+++|+|+++++|.+.+...
T Consensus 451 ~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~--------------------------------------------- 485 (707)
T KOG0263|consen 451 SGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSC--------------------------------------------- 485 (707)
T ss_pred CCceeeeeecccccceeeccCCcceeeeeccccee---------------------------------------------
Confidence 99999999999999999999999999999988762
Q ss_pred eecccccceeeeeeccceeEEEeecccceecccccccccccchhhhhhcccccEEEEEecC--CeeEeeeCCCeEEEEeC
Q psy18231 328 RCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEARDSITSVHVSD--HEILTASLDCRIRRYDI 405 (540)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~--~~l~~~~~dg~i~iwd~ 405 (540)
+....+|..+|..+.|+| -++++++.|++.++|..
T Consensus 486 -------------------------------------------~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~ 522 (707)
T KOG0263|consen 486 -------------------------------------------LVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWST 522 (707)
T ss_pred -------------------------------------------EEEecCCCcceeeEEecCCceEEEecCCCceeeeeec
Confidence 225669999999999999 78999999999999999
Q ss_pred CCCceEEeeeC--CceEEEEEecCCcEEEeecCCCeEEEEeccccchhhhhccCcCCcceEEEEecCCCCeEEEeeCCCc
Q psy18231 406 RTGNLVTDYVG--EPIVDACFTRDCQCILTCSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGK 483 (540)
Q Consensus 406 ~~~~~~~~~~~--~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~s~~~~~l~s~s~dg~ 483 (540)
...++++.+.+ ..+.|+.|+|+.+|+++|+.|.++++||+.+|..++.|.+|.++|.++ +|||+|++|++|+.||.
T Consensus 523 d~~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al--~~Sp~Gr~LaSg~ed~~ 600 (707)
T KOG0263|consen 523 DHNKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTAL--AFSPCGRYLASGDEDGL 600 (707)
T ss_pred ccCCchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEE--EEcCCCceEeecccCCc
Confidence 99888888887 479999999999999999999999999999999999999999999988 89999999999999999
Q ss_pred EEEEEecCCcceeEEEecccceeeeEEEEcCCCcEEEeec-CCeeEEEEccccc
Q psy18231 484 IYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC-GNNVKLWTAEEDY 536 (540)
Q Consensus 484 i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~-d~~i~iw~~~~~~ 536 (540)
|.+||+.+++++..+. +|.+.|.++.||.||..||+++ |++|++||+..-.
T Consensus 601 I~iWDl~~~~~v~~l~--~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~~ 652 (707)
T KOG0263|consen 601 IKIWDLANGSLVKQLK--GHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTKVI 652 (707)
T ss_pred EEEEEcCCCcchhhhh--cccCceeEEEEecCCCEEEecCCCCeEEEEEchhhc
Confidence 9999999999999999 8999999999999999999999 9999999987543
|
|
| >KOG0278|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-38 Score=258.56 Aligned_cols=285 Identities=21% Similarity=0.309 Sum_probs=256.0
Q ss_pred eeeeeecCeEEEEeCC---CCCEEEEeeCCCcEEEEcCCCCeeEEEeecCCcceeEEEEeeCCCeEEEeeCCCeEEEEEc
Q psy18231 159 RELFVLSGLMHTRFPV---DGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEV 235 (540)
Q Consensus 159 ~~~~h~~~v~~v~~sp---dg~~lat~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~ 235 (540)
...+|+.+|-.++||| +|-+|++++.||.-.+-+-++|.-+.+|.+|++.|++...+.+...-|+++.|-+-+|||.
T Consensus 9 ~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigtfeghkgavw~~~l~~na~~aasaaadftakvw~a 88 (334)
T KOG0278|consen 9 TCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWDA 88 (334)
T ss_pred EEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEeeeccCcceeeeecCchhhhhhhhcccchhhhhhh
Confidence 3568999999999986 8989999999999999999999999999999999999999999888999999999999999
Q ss_pred CCCceeEeccccCCceeEEEECCCCCEEEEecCCCcEEEEEecCCCCCCcchhhhhHhhhhcCCceeEEEEeeccccccc
Q psy18231 236 TTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHL 315 (540)
Q Consensus 236 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (540)
-+|..+..+ .|..-|.+++|+.|.++|++|+.++.++|||++..+.
T Consensus 89 ~tgdelhsf-~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~A--------------------------------- 134 (334)
T KOG0278|consen 89 VTGDELHSF-EHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKA--------------------------------- 134 (334)
T ss_pred hhhhhhhhh-hhhheeeeEEecccchhhhccchHHHhhhhhccCCCC---------------------------------
Confidence 999999988 5899999999999999999999999999999987663
Q ss_pred ccCceeeEEEeeeecccccceeeeeeccceeEEEeecccceecccccccccccchhhhhhcccccEEEEEecC--CeeEe
Q psy18231 316 SNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEARDSITSVHVSD--HEILT 393 (540)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~--~~l~~ 393 (540)
+...+.+|.+.|..+.|.. +.+++
T Consensus 135 ------------------------------------------------------pp~E~~ghtg~Ir~v~wc~eD~~iLS 160 (334)
T KOG0278|consen 135 ------------------------------------------------------PPKEISGHTGGIRTVLWCHEDKCILS 160 (334)
T ss_pred ------------------------------------------------------CchhhcCCCCcceeEEEeccCceEEe
Confidence 2236778999999999865 88889
Q ss_pred eeCCCeEEEEeCCCCceEEeee-CCceEEEEEecCCcEEEeecCCCeEEEEeccccchhhhhccCcCCcceEEEEecCCC
Q psy18231 394 ASLDCRIRRYDIRTGNLVTDYV-GEPIVDACFTRDCQCILTCSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKD 472 (540)
Q Consensus 394 ~~~dg~i~iwd~~~~~~~~~~~-~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~s~~~ 472 (540)
++.|++||+||.++++.++++. .++|+++.++++|++|.++. .+.|.+||..+...++.++... .|.+. +.+|+.
T Consensus 161 Sadd~tVRLWD~rTgt~v~sL~~~s~VtSlEvs~dG~ilTia~-gssV~Fwdaksf~~lKs~k~P~-nV~SA--SL~P~k 236 (334)
T KOG0278|consen 161 SADDKTVRLWDHRTGTEVQSLEFNSPVTSLEVSQDGRILTIAY-GSSVKFWDAKSFGLLKSYKMPC-NVESA--SLHPKK 236 (334)
T ss_pred eccCCceEEEEeccCcEEEEEecCCCCcceeeccCCCEEEEec-CceeEEeccccccceeeccCcc-ccccc--cccCCC
Confidence 9999999999999999999987 47999999999999887654 5779999999999888887543 34444 788999
Q ss_pred CeEEEeeCCCcEEEEEecCCcceeEE-EecccceeeeEEEEcCCCcEEEeec-CCeeEEEEcccccC
Q psy18231 473 SQIFCGSSDGKIYKWQLVDSSQISTL-IHSVGKAVVNSLCSHPTRKHIMSAC-GNNVKLWTAEEDYG 537 (540)
Q Consensus 473 ~~l~s~s~dg~i~iwd~~~~~~~~~~-~~~~~~~~v~~l~~s~d~~~l~s~~-d~~i~iw~~~~~~~ 537 (540)
..+++|++|..++.||..+++.+..+ + +|.++|.++.|+|||...++|+ ||+|+||....+-.
T Consensus 237 ~~fVaGged~~~~kfDy~TgeEi~~~nk--gh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~~~ 301 (334)
T KOG0278|consen 237 EFFVAGGEDFKVYKFDYNTGEEIGSYNK--GHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTPGKT 301 (334)
T ss_pred ceEEecCcceEEEEEeccCCceeeeccc--CCCCceEEEEECCCCceeeccCCCceEEEEEecCCCc
Confidence 99999999999999999999999886 4 8999999999999999999999 99999999876543
|
|
| >KOG0296|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-37 Score=262.47 Aligned_cols=315 Identities=13% Similarity=0.165 Sum_probs=263.1
Q ss_pred CCcceeccccchhhhhhcccccceeeeecccccc---eeeeeecCeEEEEeCCCCCEEEEeeCCCcEEEEcCCCCeeEEE
Q psy18231 125 THPLLFSLPRTITRILYELPKEWSIRVYRPLTVN---RELFVLSGLMHTRFPVDGSYCLTCGSDKKIKLWNPYRNLLLKT 201 (540)
Q Consensus 125 ~~~~~~s~~~~~~~~~~~~~~~~~i~~~~~~~~~---~~~~h~~~v~~v~~spdg~~lat~~~dg~i~iwd~~~~~~~~~ 201 (540)
...+..+..+ ...++++++.|..-.+|+..++. ...+|.+.|+++.||.||.+||||+.+|.|+||+..++.....
T Consensus 65 ~svFavsl~P-~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~ 143 (399)
T KOG0296|consen 65 DSVFAVSLHP-NNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWK 143 (399)
T ss_pred CceEEEEeCC-CCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCceEEE
Confidence 3455555555 46677888888889999998876 3456999999999999999999999999999999999999888
Q ss_pred eecCCcceeEEEEeeCCCeEEEeeCCCeEEEEEcCCCceeEeccccCCceeEEEECCCCCEEEEecCCCcEEEEEecCCC
Q psy18231 202 YGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRS 281 (540)
Q Consensus 202 ~~~h~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~ 281 (540)
+...-+.|.=+.|+|.+..|+.|+.||.+.+|.+.++...+.+.+|..++++-.|.|+|+.++++..||+|++|++.++.
T Consensus 144 ~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~ 223 (399)
T KOG0296|consen 144 LDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQ 223 (399)
T ss_pred eecccCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEecCceEEEEecCCCc
Confidence 87667888889999999999999999999999999988888999999999999999999999999999999999999986
Q ss_pred CCCcchhhhhHhhhhcCCceeEEEEeecccccccccCceeeEEEeeeecccccceeeeeeccceeEEEeecccceecccc
Q psy18231 282 HHPIQVRCLNEALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDV 361 (540)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (540)
+....
T Consensus 224 p~~~~--------------------------------------------------------------------------- 228 (399)
T KOG0296|consen 224 PLHKI--------------------------------------------------------------------------- 228 (399)
T ss_pred eeEEe---------------------------------------------------------------------------
Confidence 21100
Q ss_pred cccccccchhhhhhcccccEEEEEecC--CeeEeeeCCCeEEEEeCCCCceEEeeeC----------C---ceEEEEEec
Q psy18231 362 TPISIHNSCFQALKEARDSITSVHVSD--HEILTASLDCRIRRYDIRTGNLVTDYVG----------E---PIVDACFTR 426 (540)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~v~~l~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~----------~---~i~~~~~sp 426 (540)
-........++.++. ..++.|+.++.+++-+..+++.+....+ + .|-.+.++.
T Consensus 229 ------------~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss 296 (399)
T KOG0296|consen 229 ------------TQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSS 296 (399)
T ss_pred ------------cccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhccccc
Confidence 000012233444443 7788888899998888888887766552 2 344445555
Q ss_pred CCcEEEeecCCCeEEEEeccccchhhhhccCcCCcceEEEEecCCCCeEEEeeCCCcEEEEEecCCcceeEEEeccccee
Q psy18231 427 DCQCILTCSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAV 506 (540)
Q Consensus 427 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~ 506 (540)
.-.+.|+|+-||+|.|||+...++...+. |...|..+ .|-+ ..+|++++.+|.|+.||.++|+++.++. +|...
T Consensus 297 ~lpL~A~G~vdG~i~iyD~a~~~~R~~c~-he~~V~~l--~w~~-t~~l~t~c~~g~v~~wDaRtG~l~~~y~--GH~~~ 370 (399)
T KOG0296|consen 297 KLPLAACGSVDGTIAIYDLAASTLRHICE-HEDGVTKL--KWLN-TDYLLTACANGKVRQWDARTGQLKFTYT--GHQMG 370 (399)
T ss_pred ccchhhcccccceEEEEecccchhheecc-CCCceEEE--EEcC-cchheeeccCceEEeeeccccceEEEEe--cCchh
Confidence 66789999999999999998877655554 77777666 7777 6799999999999999999999999999 99999
Q ss_pred eeEEEEcCCCcEEEeec-CCeeEEEEcc
Q psy18231 507 VNSLCSHPTRKHIMSAC-GNNVKLWTAE 533 (540)
Q Consensus 507 v~~l~~s~d~~~l~s~~-d~~i~iw~~~ 533 (540)
|.+++.+|++++++|++ |++.+|++++
T Consensus 371 Il~f~ls~~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 371 ILDFALSPQKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred eeEEEEcCCCcEEEEecCCCeEEEEecC
Confidence 99999999999999999 9999999976
|
|
| >KOG0291|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-35 Score=277.27 Aligned_cols=366 Identities=16% Similarity=0.240 Sum_probs=264.1
Q ss_pred eeecCeEEEEeCCCCCEEEEeeCCCcEEEEcCCCC--------eeEEEeecCCcceeEEEEeeCCCeEEEeeCCCeEEEE
Q psy18231 162 FVLSGLMHTRFPVDGSYCLTCGSDKKIKLWNPYRN--------LLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILW 233 (540)
Q Consensus 162 ~h~~~v~~v~~spdg~~lat~~~dg~i~iwd~~~~--------~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~dg~i~iw 233 (540)
....+|.|+.|||||+++|+|. .+.+.||..... ...+++.+|...|.++.|+.|.++|++|+.|-++++|
T Consensus 94 ~fk~~v~~i~fSPng~~fav~~-gn~lqiw~~P~~~~~~~~pFvl~r~~~g~fddi~si~Ws~DSr~l~~gsrD~s~rl~ 172 (893)
T KOG0291|consen 94 NFKRGVGAIKFSPNGKFFAVGC-GNLLQIWHAPGEIKNEFNPFVLHRTYLGHFDDITSIDWSDDSRLLVTGSRDLSARLF 172 (893)
T ss_pred eecCccceEEECCCCcEEEEEe-cceeEEEecCcchhcccCcceEeeeecCCccceeEEEeccCCceEEeccccceEEEE
Confidence 3458999999999999999876 578999986532 3456778999999999999999999999999999999
Q ss_pred EcCCCce--eEeccccCCceeEEEECCCCCEEEEecCCCcEEEEEecCCCCCCcchhh----------hhHhhhhcCCce
Q psy18231 234 EVTTGQP--VRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQVRC----------LNEALKEARDSI 301 (540)
Q Consensus 234 d~~~~~~--~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~----------~~~~~~~~~~~~ 301 (540)
+++..+. ...+.+|.+.|...-|..+...+++.+.||.+.+|.............. ............
T Consensus 173 ~v~~~k~~~~~~l~gHkd~VvacfF~~~~~~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~ 252 (893)
T KOG0291|consen 173 GVDGNKNLFTYALNGHKDYVVACFFGANSLDLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIF 252 (893)
T ss_pred EeccccccceEeccCCCcceEEEEeccCcceEEEEecCceEEEEEecCCCcccccccccccccccccccccchhhhcceE
Confidence 9987766 5567899999999999999999999999999999988743211111000 000000000000
Q ss_pred -------------eEEEEeecccccc-cccCceeeEEEeeeecccc---------cceeeeeeccceeEEEeecc--cce
Q psy18231 302 -------------TSVHSLVKSTKNH-LSNGLLTKLVFAFRCKYLN---------GLLSGVLMSTQHLMVLLDFL--GST 356 (540)
Q Consensus 302 -------------~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~--~~~ 356 (540)
..+....+.+... +..+........+..+... ..+..+.....+.++..... |+.
T Consensus 253 ~~k~~k~~ln~~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQL 332 (893)
T KOG0291|consen 253 WYKTKKHYLNQNSSKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQL 332 (893)
T ss_pred EEEEEeeeecccccceeeeeccCCceEEEEEecCCeeEEEecCCceEEEEeecccceeeEEEecccCCEEEEcCCccceE
Confidence 0111111111111 1111111111111111110 11111122222222222211 122
Q ss_pred ecccccccccccchhhhhhcccccEEEEEecC--CeeEeeeCCCeEEEEeCCCCceEEeeeC--CceEEEEEecCCcEEE
Q psy18231 357 QIGDVTPISIHNSCFQALKEARDSITSVHVSD--HEILTASLDCRIRRYDIRTGNLVTDYVG--EPIVDACFTRDCQCIL 432 (540)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~--~~i~~~~~sp~~~~l~ 432 (540)
.+|+... ...+....+|...+.+++++| +++++|+.||+|++||..++-+..++.. ..++.+.|+..|+.++
T Consensus 333 lVweWqs----EsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~ll 408 (893)
T KOG0291|consen 333 LVWEWQS----ESYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLL 408 (893)
T ss_pred EEEEeec----cceeeeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEE
Confidence 3332221 223446679999999999999 6999999999999999999999999976 5799999999999999
Q ss_pred eecCCCeEEEEeccccchhhhhccCcCCcceEEEEecCCCCeEEEeeCCC-cEEEEEecCCcceeEEEecccceeeeEEE
Q psy18231 433 TCSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDG-KIYKWQLVDSSQISTLIHSVGKAVVNSLC 511 (540)
Q Consensus 433 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~s~~~~~l~s~s~dg-~i~iwd~~~~~~~~~~~~~~~~~~v~~l~ 511 (540)
+++-||+|+.||+...+..++|.... ++....++..|.|..++.|+.|. .|++|++++|+.+..+. +|.++|.+++
T Consensus 409 ssSLDGtVRAwDlkRYrNfRTft~P~-p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLs--GHEgPVs~l~ 485 (893)
T KOG0291|consen 409 SSSLDGTVRAWDLKRYRNFRTFTSPE-PIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILS--GHEGPVSGLS 485 (893)
T ss_pred EeecCCeEEeeeecccceeeeecCCC-ceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhc--CCCCcceeeE
Confidence 99999999999999999999988654 45555557888899999999886 59999999999999999 9999999999
Q ss_pred EcCCCcEEEeec-CCeeEEEEcccc
Q psy18231 512 SHPTRKHIMSAC-GNNVKLWTAEED 535 (540)
Q Consensus 512 ~s~d~~~l~s~~-d~~i~iw~~~~~ 535 (540)
|+|++..|++++ |.+|++|++-..
T Consensus 486 f~~~~~~LaS~SWDkTVRiW~if~s 510 (893)
T KOG0291|consen 486 FSPDGSLLASGSWDKTVRIWDIFSS 510 (893)
T ss_pred EccccCeEEeccccceEEEEEeecc
Confidence 999999999999 999999998654
|
|
| >KOG0306|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-36 Score=279.67 Aligned_cols=417 Identities=15% Similarity=0.201 Sum_probs=297.9
Q ss_pred eEEEeccccceecccccC-Ccceeccccchhhhhhcccccceeeeecccccc---eeeeeecCeEEEEeCCCCCEEEEee
Q psy18231 108 RWAIKEGYGCALLSKQRT-HPLLFSLPRTITRILYELPKEWSIRVYRPLTVN---RELFVLSGLMHTRFPVDGSYCLTCG 183 (540)
Q Consensus 108 ~~~~~~g~g~~l~~~~~~-~~~~~s~~~~~~~~~~~~~~~~~i~~~~~~~~~---~~~~h~~~v~~v~~spdg~~lat~~ 183 (540)
.|+.++|.--..|...+. .+..+-.+......++-+-.|+.|++|+..+.. ..-+|..+|+++.|+..|.+||+||
T Consensus 47 ~WdlRtge~~~~l~~~~~k~evt~l~~~~d~l~lAVGYaDGsVqif~~~s~~~~~tfngHK~AVt~l~fd~~G~rlaSGs 126 (888)
T KOG0306|consen 47 IWDLRTGEIEKKLILLKKKAEVTCLRSSDDILLLAVGYADGSVQIFSLESEEILITFNGHKAAVTTLKFDKIGTRLASGS 126 (888)
T ss_pred EEeeecchhhhhhhhhcccceEEEeeccCCcceEEEEecCceEEeeccCCCceeeeecccccceEEEEEcccCceEeecC
Confidence 577788743322222221 133333332234555778889999999988543 2346999999999999999999999
Q ss_pred CCCcEEEEcCCCCeeEEEeecCCcceeEEEEeeCCCeEEEeeCCCeEEEEEcCCCceeEeccccCCceeEEEECCCCCEE
Q psy18231 184 SDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVV 263 (540)
Q Consensus 184 ~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l 263 (540)
.|+.|.+||+-...-+..+.||...|+..-|..+.++|++.+.|+.|++||+++..+..+.-.|.+.++.+++.+ +.+
T Consensus 127 kDt~IIvwDlV~E~Gl~rL~GHkd~iT~~~F~~~~~~lvS~sKDs~iK~WdL~tqhCf~Thvd~r~Eiw~l~~~~--~~l 204 (888)
T KOG0306|consen 127 KDTDIIVWDLVGEEGLFRLRGHKDSITQALFLNGDSFLVSVSKDSMIKFWDLETQHCFETHVDHRGEIWALVLDE--KLL 204 (888)
T ss_pred CCccEEEEEeccceeeEEeecchHHHhHHhccCCCeEEEEeccCceEEEEecccceeeeEEecccceEEEEEEec--ceE
Confidence 999999999988888999999999999999998889999999999999999999999999999999999999987 689
Q ss_pred EEecCCCcEEEEEecCCCC----------------------CCc--------------------ch----------hhhh
Q psy18231 264 ISGSQDNTVMMWDVKSRSH----------------------HPI--------------------QV----------RCLN 291 (540)
Q Consensus 264 ~s~~~dg~i~iwd~~~~~~----------------------~~~--------------------~~----------~~~~ 291 (540)
++++.|+.+++|++....- ..+ .. +.+.
T Consensus 205 vt~~~dse~~v~~L~~~~D~~~~~~~~s~~~~G~~~rqsk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~ 284 (888)
T KOG0306|consen 205 VTAGTDSELKVWELAFEDDEKETNRYISTKLRGTFIRQSKGREINLVTDFSDRFLVCQGADKVIELFRIRSKEEIAKILS 284 (888)
T ss_pred EEEecCCceEEEEeecccccccccccceeeccceeeeccCCceeEEeecCcccEEEEecchhhhhheeecCHHHHHHHHH
Confidence 9999999999999821000 000 00 0000
Q ss_pred H--------------------hhhh---------cCCceeEEEEeeccccc-----------------c-cccCceeeEE
Q psy18231 292 E--------------------ALKE---------ARDSITSVHSLVKSTKN-----------------H-LSNGLLTKLV 324 (540)
Q Consensus 292 ~--------------------~~~~---------~~~~~~~~~~~~~~~~~-----------------~-~~~~~~~~~~ 324 (540)
. .+.. ....+.++...+..... . ..........
T Consensus 285 Kk~k~~Kkka~t~e~~~~v~~sl~~~i~r~~~ir~~~kiks~dv~~~~~~~~~lv~l~nNtv~~ysl~~s~~~~p~~~~~ 364 (888)
T KOG0306|consen 285 KKLKRAKKKAETEENEDDVEKSLSDEIKRLETIRTSAKIKSFDVTPSGGTENTLVLLANNTVEWYSLENSGKTSPEADRT 364 (888)
T ss_pred HHHHHhhhhccccccccchhhhHHHHHHHHHheechhheeEEEEEecCCcceeEEEeecCceEEEEeccCCCCCcccccc
Confidence 0 0000 00000011111100000 0 0000000111
Q ss_pred Eeeeecccccceeeeeeccc----------------------------------------eeEEEeecccceeccccccc
Q psy18231 325 FAFRCKYLNGLLSGVLMSTQ----------------------------------------HLMVLLDFLGSTQIGDVTPI 364 (540)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~----------------------------------------~~~~~~~~~~~~~~~~~~~~ 364 (540)
...........+..+..+.+ ..+.+....|..++.++..
T Consensus 365 ~~i~~~GHR~dVRsl~vS~d~~~~~Sga~~SikiWn~~t~kciRTi~~~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS- 443 (888)
T KOG0306|consen 365 SNIEIGGHRSDVRSLCVSSDSILLASGAGESIKIWNRDTLKCIRTITCGYILASKFVPGDRYIVLGTKNGELQVFDLAS- 443 (888)
T ss_pred ceeeeccchhheeEEEeecCceeeeecCCCcEEEEEccCcceeEEeccccEEEEEecCCCceEEEeccCCceEEEEeeh-
Confidence 11111222222222222222 2222222333333333322
Q ss_pred ccccchhhhhhcccccEEEEEecC--CeeEeeeCCCeEEEEeCCC-------CceEEeee-------CCceEEEEEecCC
Q psy18231 365 SIHNSCFQALKEARDSITSVHVSD--HEILTASLDCRIRRYDIRT-------GNLVTDYV-------GEPIVDACFTRDC 428 (540)
Q Consensus 365 ~~~~~~~~~~~~~~~~v~~l~~~~--~~l~~~~~dg~i~iwd~~~-------~~~~~~~~-------~~~i~~~~~sp~~ 428 (540)
...+.....|.+.|.+++.+| ..+++|+.|.+|++||..- .+.+..++ ...|.|+.+||||
T Consensus 444 ---~~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdg 520 (888)
T KOG0306|consen 444 ---ASLVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDG 520 (888)
T ss_pred ---hhhhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCC
Confidence 223456779999999999998 8899999999999998751 11112222 2679999999999
Q ss_pred cEEEeecCCCeEEEEeccccchhhhhccCcCCcceEEEEecCCCCeEEEeeCCCcEEEEEecCCcceeEEEecccceeee
Q psy18231 429 QCILTCSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVN 508 (540)
Q Consensus 429 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~ 508 (540)
++|+++--|++++||-+.+.+..-++.+|.-||.++ ..|||++.++|||.|.+|+||-+.-|.+.+.+- +|...|.
T Consensus 521 k~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~sm--DIS~DSklivTgSADKnVKiWGLdFGDCHKS~f--AHdDSvm 596 (888)
T KOG0306|consen 521 KLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSM--DISPDSKLIVTGSADKNVKIWGLDFGDCHKSFF--AHDDSVM 596 (888)
T ss_pred cEEEEEeccCeEEEEEecceeeeeeecccccceeEE--eccCCcCeEEeccCCCceEEeccccchhhhhhh--cccCcee
Confidence 999999999999999999999999999999999988 789999999999999999999999999999999 9999999
Q ss_pred EEEEcCCCcEEEeec-CCeeEEEEccc
Q psy18231 509 SLCSHPTRKHIMSAC-GNNVKLWTAEE 534 (540)
Q Consensus 509 ~l~~s~d~~~l~s~~-d~~i~iw~~~~ 534 (540)
++.|-|+..++.+++ |+.|+-||-++
T Consensus 597 ~V~F~P~~~~FFt~gKD~kvKqWDg~k 623 (888)
T KOG0306|consen 597 SVQFLPKTHLFFTCGKDGKVKQWDGEK 623 (888)
T ss_pred EEEEcccceeEEEecCcceEEeechhh
Confidence 999999999999999 99999998653
|
|
| >KOG0276|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-36 Score=278.22 Aligned_cols=280 Identities=16% Similarity=0.264 Sum_probs=257.0
Q ss_pred eeecCeEEEEeCCCCCEEEEeeCCCcEEEEcCCCCeeEEEeecCCcceeEEEEeeCCCeEEEeeCCCeEEEEEcCCCcee
Q psy18231 162 FVLSGLMHTRFPVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPV 241 (540)
Q Consensus 162 ~h~~~v~~v~~spdg~~lat~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~ 241 (540)
.|...|.++.|+|...+++++-.+|.|.|||.++...++++....-+|.+..|-+..+++++|+.|..|+||+.++++.+
T Consensus 11 ~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~ekV 90 (794)
T KOG0276|consen 11 SRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGEKV 90 (794)
T ss_pred ccCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeeecccchhhheeeeccceEEEecCCceEEEEecccceee
Confidence 47889999999999999999999999999999999999999989999999999999999999999999999999999999
Q ss_pred EeccccCCceeEEEECCCCCEEEEecCCCcEEEEEecCCCCCCcchhhhhHhhhhcCCceeEEEEeecccccccccCcee
Q psy18231 242 RRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHLSNGLLT 321 (540)
Q Consensus 242 ~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (540)
..+..|.+.|.+++.+|...+++|+|.|-+|++||.+..=
T Consensus 91 ~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~w---------------------------------------- 130 (794)
T KOG0276|consen 91 KTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEW---------------------------------------- 130 (794)
T ss_pred EEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCce----------------------------------------
Confidence 9999999999999999999999999999999999987642
Q ss_pred eEEEeeeecccccceeeeeeccceeEEEeecccceecccccccccccchhhhhhcccccEEEEEecC---CeeEeeeCCC
Q psy18231 322 KLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEARDSITSVHVSD---HEILTASLDC 398 (540)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~---~~l~~~~~dg 398 (540)
.+.+++.+|..-|++++|+| +.+++++.|+
T Consensus 131 -----------------------------------------------a~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDr 163 (794)
T KOG0276|consen 131 -----------------------------------------------ACEQTFEGHEHYVMQVAFNPKDPNTFASASLDR 163 (794)
T ss_pred -----------------------------------------------eeeeEEcCcceEEEEEEecCCCccceeeeeccc
Confidence 13347889999999999999 8999999999
Q ss_pred eEEEEeCCCCceEEeeeCC--ceEEEEEecC--CcEEEeecCCCeEEEEeccccchhhhhccCcCCcceEEEEecCCCCe
Q psy18231 399 RIRRYDIRTGNLVTDYVGE--PIVDACFTRD--CQCILTCSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQ 474 (540)
Q Consensus 399 ~i~iwd~~~~~~~~~~~~~--~i~~~~~sp~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~s~~~~~ 474 (540)
+|++|.+.+..+..++.+| .|+++.|-+. ..+|++|+.|.+++|||.++..+++++.+|...|..+ +|+|.=..
T Consensus 164 TVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v--~fhp~lpi 241 (794)
T KOG0276|consen 164 TVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNVSFV--FFHPELPI 241 (794)
T ss_pred cEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccccceEE--EecCCCcE
Confidence 9999999999999999874 7999999874 4799999999999999999999999999999999988 89999999
Q ss_pred EEEeeCCCcEEEEEecCCcceeEEEecccceeeeEEEEcCCCcEEEeecCCeeEEEEc
Q psy18231 475 IFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTA 532 (540)
Q Consensus 475 l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~d~~i~iw~~ 532 (540)
+++||+||+++||+..+.++..++. -..+.+.+++-.+.+..++.|.|....+.++
T Consensus 242 iisgsEDGTvriWhs~Ty~lE~tLn--~gleRvW~I~~~k~~~~i~vG~Deg~i~v~l 297 (794)
T KOG0276|consen 242 IISGSEDGTVRIWNSKTYKLEKTLN--YGLERVWCIAAHKGDGKIAVGFDEGSVTVKL 297 (794)
T ss_pred EEEecCCccEEEecCcceehhhhhh--cCCceEEEEeecCCCCeEEEeccCCcEEEEc
Confidence 9999999999999999999988888 5678899999988888888888544434444
|
|
| >KOG0295|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-37 Score=263.34 Aligned_cols=263 Identities=23% Similarity=0.381 Sum_probs=237.6
Q ss_pred hhhhhcccccceeeeecccccc---eeeeeecCeEEEEeCCCCCEEEEeeCCCcEEEEcCCC-CeeEEEeecCCcceeEE
Q psy18231 137 TRILYELPKEWSIRVYRPLTVN---RELFVLSGLMHTRFPVDGSYCLTCGSDKKIKLWNPYR-NLLLKTYGGHAHEVNDA 212 (540)
Q Consensus 137 ~~~~~~~~~~~~i~~~~~~~~~---~~~~h~~~v~~v~~spdg~~lat~~~dg~i~iwd~~~-~~~~~~~~~h~~~v~~l 212 (540)
..+.+..+.+.+|++|+..+.. ...+|+++|..++|+..|++||+++.|-.+.+||.++ .++++.+.+|...|.++
T Consensus 120 ~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~~~c~ks~~gh~h~vS~V 199 (406)
T KOG0295|consen 120 EALVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTFFRCIKSLIGHEHGVSSV 199 (406)
T ss_pred ceEEEEecCCceEEEEEccchhhhhhhhccccceeEEEEecCccEEEecCCccchhheeHHHHHHHHHHhcCcccceeeE
Confidence 4455667889999999998865 4577999999999999999999999999999999877 57788889999999999
Q ss_pred EEeeCCCeEEEeeCCCeEEEEEcCCCceeEeccccCCceeEEEECCCCCEEEEecCCCcEEEEEecCCCCCCcchhhhhH
Q psy18231 213 TAACDSSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQVRCLNE 292 (540)
Q Consensus 213 ~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~ 292 (540)
.|-|.|.++++++.|.+|+.|++.+|-++.++.+|...|..+..+.||.++++++.|.++++|-+.+++
T Consensus 200 ~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~----------- 268 (406)
T KOG0295|consen 200 FFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQ----------- 268 (406)
T ss_pred EEEecCCeeeecccccceeEEecccceeEEeccCchHhEEEEEecCCeeEEEecCCCceEEEEEeccch-----------
Confidence 999999999999999999999999999999999999999999999999999999999999999998875
Q ss_pred hhhhcCCceeEEEEeecccccccccCceeeEEEeeeecccccceeeeeeccceeEEEeecccceecccccccccccchhh
Q psy18231 293 ALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQ 372 (540)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (540)
+..
T Consensus 269 -----------------------------------------------------------------------------~k~ 271 (406)
T KOG0295|consen 269 -----------------------------------------------------------------------------CKA 271 (406)
T ss_pred -----------------------------------------------------------------------------hhh
Confidence 222
Q ss_pred hhhcccccEEEEEecC-----------------CeeEeeeCCCeEEEEeCCCCceEEeeeC--CceEEEEEecCCcEEEe
Q psy18231 373 ALKEARDSITSVHVSD-----------------HEILTASLDCRIRRYDIRTGNLVTDYVG--EPIVDACFTRDCQCILT 433 (540)
Q Consensus 373 ~~~~~~~~v~~l~~~~-----------------~~l~~~~~dg~i~iwd~~~~~~~~~~~~--~~i~~~~~sp~~~~l~~ 433 (540)
.+..|.-+|.+++|-| ..+++++.|++|++||+.++.++.++.+ +.|..++|+|.|+||++
T Consensus 272 ~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af~p~Gkyi~S 351 (406)
T KOG0295|consen 272 ELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSPGGKYILS 351 (406)
T ss_pred hhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEecccceeeeeEEcCCCeEEEE
Confidence 4556666666666632 4789999999999999999999999987 58999999999999999
Q ss_pred ecCCCeEEEEeccccchhhhhccCcCCcceEEEEecCCCCeEEEeeCCCcEEEEEe
Q psy18231 434 CSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQL 489 (540)
Q Consensus 434 ~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~s~~~~~l~s~s~dg~i~iwd~ 489 (540)
+..|+++++||++++++..++..|+.-++++ .|+.+-.++++|+-|.++++|.-
T Consensus 352 caDDktlrvwdl~~~~cmk~~~ah~hfvt~l--Dfh~~~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 352 CADDKTLRVWDLKNLQCMKTLEAHEHFVTSL--DFHKTAPYVVTGSVDQTVKVWEC 405 (406)
T ss_pred EecCCcEEEEEeccceeeeccCCCcceeEEE--ecCCCCceEEeccccceeeeeec
Confidence 9999999999999999999999999988888 78888889999999999999973
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-35 Score=308.35 Aligned_cols=279 Identities=22% Similarity=0.364 Sum_probs=230.7
Q ss_pred eeeecCeEEEEeCCCCCEEEEeeCCCcEEEEcCCCC--------eeEEEeecCCcceeEEEEee-CCCeEEEeeCCCeEE
Q psy18231 161 LFVLSGLMHTRFPVDGSYCLTCGSDKKIKLWNPYRN--------LLLKTYGGHAHEVNDATAAC-DSSQIASGASDKSVI 231 (540)
Q Consensus 161 ~~h~~~v~~v~~spdg~~lat~~~dg~i~iwd~~~~--------~~~~~~~~h~~~v~~l~~sp-~~~~l~s~s~dg~i~ 231 (540)
..|.+.|.+++|+|+|++||+|+.|++|+|||..+. .+...+. +...|.+++|+| ++.+|++++.||+|+
T Consensus 480 ~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~-~~~~v~~l~~~~~~~~~las~~~Dg~v~ 558 (793)
T PLN00181 480 LNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELA-SRSKLSGICWNSYIKSQVASSNFEGVVQ 558 (793)
T ss_pred cCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEec-ccCceeeEEeccCCCCEEEEEeCCCeEE
Confidence 348899999999999999999999999999997532 1223333 356899999987 578999999999999
Q ss_pred EEEcCCCceeEeccccCCceeEEEECC-CCCEEEEecCCCcEEEEEecCCCCCCcchhhhhHhhhhcCCceeEEEEeecc
Q psy18231 232 LWEVTTGQPVRRWREHASKVTCVKFNE-DSSVVISGSQDNTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKS 310 (540)
Q Consensus 232 iwd~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (540)
+||+.+++.+..+.+|.+.|++++|+| ++.+|++|+.||+|++||++++.. ..
T Consensus 559 lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~--~~------------------------ 612 (793)
T PLN00181 559 VWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVS--IG------------------------ 612 (793)
T ss_pred EEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcE--EE------------------------
Confidence 999999999999999999999999997 789999999999999999987641 00
Q ss_pred cccccccCceeeEEEeeeecccccceeeeeeccceeEEEeecccceecccccccccccchhhhhhcccccEEEEEecC--
Q psy18231 311 TKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEARDSITSVHVSD-- 388 (540)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~-- 388 (540)
.+. +...+.++.|++
T Consensus 613 --------------------------------------------------------------~~~-~~~~v~~v~~~~~~ 629 (793)
T PLN00181 613 --------------------------------------------------------------TIK-TKANICCVQFPSES 629 (793)
T ss_pred --------------------------------------------------------------EEe-cCCCeEEEEEeCCC
Confidence 111 124677888853
Q ss_pred -CeeEeeeCCCeEEEEeCCCCc-eEEeeeC--CceEEEEEecCCcEEEeecCCCeEEEEecccc------chhhhhccCc
Q psy18231 389 -HEILTASLDCRIRRYDIRTGN-LVTDYVG--EPIVDACFTRDCQCILTCSTDECLRLFDKATG------ELLEEYKGHK 458 (540)
Q Consensus 389 -~~l~~~~~dg~i~iwd~~~~~-~~~~~~~--~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~------~~~~~~~~~~ 458 (540)
..+++|+.||.|++||+++.+ .+..+.+ ..|.++.|. ++.+|++++.|++|++||+..+ +.+..+.+|.
T Consensus 630 g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~ 708 (793)
T PLN00181 630 GRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHT 708 (793)
T ss_pred CCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCC
Confidence 789999999999999998765 3445544 579999997 7789999999999999999743 5677888999
Q ss_pred CCcceEEEEecCCCCeEEEeeCCCcEEEEEecCCcceeEEE-----------ecccceeeeEEEEcCCCcEEEeec-CCe
Q psy18231 459 SGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLI-----------HSVGKAVVNSLCSHPTRKHIMSAC-GNN 526 (540)
Q Consensus 459 ~~v~~~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-----------~~~~~~~v~~l~~s~d~~~l~s~~-d~~ 526 (540)
..+..+ +|++++.+|++|+.|+.|++|+.....++..+. ...|...|.+++|+|++..|++|+ ||.
T Consensus 709 ~~i~~v--~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~~dG~ 786 (793)
T PLN00181 709 NVKNFV--GLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLVAANSTGN 786 (793)
T ss_pred CCeeEE--EEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCCCeEEEecCCCc
Confidence 888877 799999999999999999999977655443221 113566799999999999999999 999
Q ss_pred eEEEEc
Q psy18231 527 VKLWTA 532 (540)
Q Consensus 527 i~iw~~ 532 (540)
|+||++
T Consensus 787 I~i~~~ 792 (793)
T PLN00181 787 IKILEM 792 (793)
T ss_pred EEEEec
Confidence 999986
|
|
| >KOG0284|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-37 Score=266.24 Aligned_cols=257 Identities=20% Similarity=0.337 Sum_probs=228.3
Q ss_pred cccccceeeeecccccc---eeeeeecCeEEEEeCCCCCEEEEeeCCCcEEEEcCCCCeeEEEeec-CCcceeEEEEeeC
Q psy18231 142 ELPKEWSIRVYRPLTVN---RELFVLSGLMHTRFPVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGG-HAHEVNDATAACD 217 (540)
Q Consensus 142 ~~~~~~~i~~~~~~~~~---~~~~h~~~v~~v~~spdg~~lat~~~dg~i~iwd~~~~~~~~~~~~-h~~~v~~l~~sp~ 217 (540)
.++..+.+.+|+-...+ ....|..+|+++.|+++|.++++|+.+|.|++|+..-.. ++.+.. |...|++++|+|+
T Consensus 113 tgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnn-Vk~~~ahh~eaIRdlafSpn 191 (464)
T KOG0284|consen 113 TGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNN-VKIIQAHHAEAIRDLAFSPN 191 (464)
T ss_pred eecccccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchhh-hHHhhHhhhhhhheeccCCC
Confidence 45677788899886644 346799999999999999999999999999999975444 444544 5599999999999
Q ss_pred CCeEEEeeCCCeEEEEEcCCCceeEeccccCCceeEEEECCCCCEEEEecCCCcEEEEEecCCCCCCcchhhhhHhhhhc
Q psy18231 218 SSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQVRCLNEALKEA 297 (540)
Q Consensus 218 ~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 297 (540)
...++++|.||+|+|||....+.-..+.+|.-.|.+++|+|...+++++|.|..|++||.+++.
T Consensus 192 DskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg~---------------- 255 (464)
T KOG0284|consen 192 DSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGS---------------- 255 (464)
T ss_pred CceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEccCCceeEeecCCCcc----------------
Confidence 9999999999999999999998888899999999999999999999999999999999999887
Q ss_pred CCceeEEEEeecccccccccCceeeEEEeeeecccccceeeeeeccceeEEEeecccceecccccccccccchhhhhhcc
Q psy18231 298 RDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEA 377 (540)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 377 (540)
++.++..|
T Consensus 256 ------------------------------------------------------------------------cl~tlh~H 263 (464)
T KOG0284|consen 256 ------------------------------------------------------------------------CLATLHGH 263 (464)
T ss_pred ------------------------------------------------------------------------hhhhhhhc
Confidence 45588999
Q ss_pred cccEEEEEecC--CeeEeeeCCCeEEEEeCCCCceEEeeeC--CceEEEEEec-CCcEEEeecCCCeEEEEeccccchhh
Q psy18231 378 RDSITSVHVSD--HEILTASLDCRIRRYDIRTGNLVTDYVG--EPIVDACFTR-DCQCILTCSTDECLRLFDKATGELLE 452 (540)
Q Consensus 378 ~~~v~~l~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~--~~i~~~~~sp-~~~~l~~~~~dg~i~i~d~~~~~~~~ 452 (540)
+..|..+.|++ ++|++++.|..++++|+++.+.++.+.+ ..++++.|+| ...+|.+|+.||.|..|.+...+++.
T Consensus 264 KntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~ 343 (464)
T KOG0284|consen 264 KNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLG 343 (464)
T ss_pred cceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcchhhheeeccccccccceeeccCCCceEEEecccccccc
Confidence 99999999999 9999999999999999998888888876 4799999999 66789999999999999998555555
Q ss_pred hh-ccCcCCcceEEEEecCCCCeEEEeeCCCcEEEEEe
Q psy18231 453 EY-KGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQL 489 (540)
Q Consensus 453 ~~-~~~~~~v~~~~~~~s~~~~~l~s~s~dg~i~iwd~ 489 (540)
.+ .+|...|+++ +|+|-|..|++|+.|.++++|.-
T Consensus 344 ~i~~AHd~~iwsl--~~hPlGhil~tgsnd~t~rfw~r 379 (464)
T KOG0284|consen 344 EIPPAHDGEIWSL--AYHPLGHILATGSNDRTVRFWTR 379 (464)
T ss_pred CCCcccccceeee--eccccceeEeecCCCcceeeecc
Confidence 44 5788999998 89999999999999999999974
|
|
| >KOG0645|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-35 Score=240.14 Aligned_cols=263 Identities=19% Similarity=0.331 Sum_probs=220.3
Q ss_pred hhhhhcccccceeeeeccccc-ce------eeeeecCeEEEEeCCCCCEEEEeeCCCcEEEEcCCCC--eeEEEeecCCc
Q psy18231 137 TRILYELPKEWSIRVYRPLTV-NR------ELFVLSGLMHTRFPVDGSYCLTCGSDKKIKLWNPYRN--LLLKTYGGHAH 207 (540)
Q Consensus 137 ~~~~~~~~~~~~i~~~~~~~~-~~------~~~h~~~v~~v~~spdg~~lat~~~dg~i~iwd~~~~--~~~~~~~~h~~ 207 (540)
..++++++.+..||+|+.... .. ..+|+..|.+++|+|.|++||++|.|.++.||.-..+ +++.++.||..
T Consensus 27 g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEn 106 (312)
T KOG0645|consen 27 GVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVVIWKKEDGEFECVATLEGHEN 106 (312)
T ss_pred ceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceEEEeecCCCceeEEeeeecccc
Confidence 447889999999999998841 11 1359999999999999999999999999999985543 78899999999
Q ss_pred ceeEEEEeeCCCeEEEeeCCCeEEEEEcCCC---ceeEeccccCCceeEEEECCCCCEEEEecCCCcEEEEEecCCCCCC
Q psy18231 208 EVNDATAACDSSQIASGASDKSVILWEVTTG---QPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHP 284 (540)
Q Consensus 208 ~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~---~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~ 284 (540)
.|.|++|+++|++||+++.|..|-||.+..+ ++...+++|...|..+.|+|...+|+++|.|.+|++|+-....
T Consensus 107 EVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dd--- 183 (312)
T KOG0645|consen 107 EVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDD--- 183 (312)
T ss_pred ceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCcceeEEeccCCeEEEEeecCCC---
Confidence 9999999999999999999999999999755 4677899999999999999999999999999999999876322
Q ss_pred cchhhhhHhhhhcCCceeEEEEeecccccccccCceeeEEEeeeecccccceeeeeeccceeEEEeecccceeccccccc
Q psy18231 285 IQVRCLNEALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPI 364 (540)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (540)
T Consensus 184 -------------------------------------------------------------------------------- 183 (312)
T KOG0645|consen 184 -------------------------------------------------------------------------------- 183 (312)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccchhhhhhcccccEEEEEecC--CeeEeeeCCCeEEEEeCCCCceEEeeeCCceEEEEEecCCcEEEeecCCCeEEE
Q psy18231 365 SIHNSCFQALKEARDSITSVHVSD--HEILTASLDCRIRRYDIRTGNLVTDYVGEPIVDACFTRDCQCILTCSTDECLRL 442 (540)
Q Consensus 365 ~~~~~~~~~~~~~~~~v~~l~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~i 442 (540)
...+.+++.+|...|.+++|++ ..|++++.|++++||-..+. +...+...++.+.|. ...|++++.|+.|++
T Consensus 184 --dW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~--~~~~~sr~~Y~v~W~--~~~IaS~ggD~~i~l 257 (312)
T KOG0645|consen 184 --DWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTD--LSGMHSRALYDVPWD--NGVIASGGGDDAIRL 257 (312)
T ss_pred --CeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeeccC--cchhcccceEeeeec--ccceEeccCCCEEEE
Confidence 0123447889999999999999 79999999999999986522 223344678899997 567999999999999
Q ss_pred Eecccc------chh-hhhccCcCCcceEEEEecCC-CCeEEEeeCCCcEEEEEec
Q psy18231 443 FDKATG------ELL-EEYKGHKSGDFRIECCLDSK-DSQIFCGSSDGKIYKWQLV 490 (540)
Q Consensus 443 ~d~~~~------~~~-~~~~~~~~~v~~~~~~~s~~-~~~l~s~s~dg~i~iwd~~ 490 (540)
|--... +.+ ..-..|...|+++ .|.|. ..+|++|+.||.|++|.+.
T Consensus 258 f~~s~~~d~p~~~l~~~~~~aHe~dVNsV--~w~p~~~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 258 FKESDSPDEPSWNLLAKKEGAHEVDVNSV--QWNPKVSNRLASGGDDGIVNFWELE 311 (312)
T ss_pred EEecCCCCCchHHHHHhhhcccccccceE--EEcCCCCCceeecCCCceEEEEEec
Confidence 975542 222 2446788889888 89995 6789999999999999874
|
|
| >KOG0281|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-37 Score=260.92 Aligned_cols=258 Identities=18% Similarity=0.324 Sum_probs=227.8
Q ss_pred hhhhcccccceeeeecccccc---eeeeeecCeEEEEeCCCCCEEEEeeCCCcEEEEcCCCCeeEEEeecCCcceeEEEE
Q psy18231 138 RILYELPKEWSIRVYRPLTVN---RELFVLSGLMHTRFPVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATA 214 (540)
Q Consensus 138 ~~~~~~~~~~~i~~~~~~~~~---~~~~h~~~v~~v~~spdg~~lat~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~ 214 (540)
.++.++..|.+|++|+..+.. ...+|++.|.|+.|. .+.|++|+.|.+|+|||+++++++.++-+|...|..+.|
T Consensus 208 ~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd--~rviisGSSDsTvrvWDv~tge~l~tlihHceaVLhlrf 285 (499)
T KOG0281|consen 208 EKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQYD--ERVIVSGSSDSTVRVWDVNTGEPLNTLIHHCEAVLHLRF 285 (499)
T ss_pred hhhhcccccCceEEeccccHHHHHhhhcCCCcEEeeecc--ceEEEecCCCceEEEEeccCCchhhHHhhhcceeEEEEE
Confidence 456788999999999988864 467899999999995 558999999999999999999999999999999999999
Q ss_pred eeCCCeEEEeeCCCeEEEEEcCCCce---eEeccccCCceeEEEECCCCCEEEEecCCCcEEEEEecCCCCCCcchhhhh
Q psy18231 215 ACDSSQIASGASDKSVILWEVTTGQP---VRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQVRCLN 291 (540)
Q Consensus 215 sp~~~~l~s~s~dg~i~iwd~~~~~~---~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 291 (540)
+ ..+++++|.|.++.+||+.+... .+.+.+|...|+.+.|+ .+++++++.|.+|++|++.+.+
T Consensus 286 ~--ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd--~kyIVsASgDRTikvW~~st~e---------- 351 (499)
T KOG0281|consen 286 S--NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSASGDRTIKVWSTSTCE---------- 351 (499)
T ss_pred e--CCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccc--cceEEEecCCceEEEEecccee----------
Confidence 7 56899999999999999987643 34577999999999996 5699999999999999998876
Q ss_pred HhhhhcCCceeEEEEeecccccccccCceeeEEEeeeecccccceeeeeeccceeEEEeecccceecccccccccccchh
Q psy18231 292 EALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCF 371 (540)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (540)
++
T Consensus 352 ------------------------------------------------------------------------------fv 353 (499)
T KOG0281|consen 352 ------------------------------------------------------------------------------FV 353 (499)
T ss_pred ------------------------------------------------------------------------------ee
Confidence 45
Q ss_pred hhhhcccccEEEEEecCCeeEeeeCCCeEEEEeCCCCceEEeeeCC--ceEEEEEecCCcEEEeecCCCeEEEEeccccc
Q psy18231 372 QALKEARDSITSVHVSDHEILTASLDCRIRRYDIRTGNLVTDYVGE--PIVDACFTRDCQCILTCSTDECLRLFDKATGE 449 (540)
Q Consensus 372 ~~~~~~~~~v~~l~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~--~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~ 449 (540)
+++.+|...|.|+.+...++++|+.|.+|++||+..|.+++.++++ -|.++.| |.+.+++|+.||+|++||+..+.
T Consensus 354 Rtl~gHkRGIAClQYr~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRF--d~krIVSGaYDGkikvWdl~aal 431 (499)
T KOG0281|consen 354 RTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF--DNKRIVSGAYDGKIKVWDLQAAL 431 (499)
T ss_pred hhhhcccccceehhccCeEEEecCCCceEEEEeccccHHHHHHhchHHhhhheee--cCceeeeccccceEEEEeccccc
Confidence 6889999999999999999999999999999999999999999985 5899999 67889999999999999997753
Q ss_pred ---------hhhhhccCcCCcceEEEEecCCCCeEEEeeCCCcEEEEEecCCcce
Q psy18231 450 ---------LLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQI 495 (540)
Q Consensus 450 ---------~~~~~~~~~~~v~~~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~ 495 (540)
++.++..|++.|..+ .| |...+++++.|.+|.|||..++.+-
T Consensus 432 dpra~~~~~Cl~~lv~hsgRVFrL--QF--D~fqIvsssHddtILiWdFl~~~~~ 482 (499)
T KOG0281|consen 432 DPRAPASTLCLRTLVEHSGRVFRL--QF--DEFQIISSSHDDTILIWDFLNGPPS 482 (499)
T ss_pred CCcccccchHHHhhhhccceeEEE--ee--cceEEEeccCCCeEEEEEcCCCCcc
Confidence 467777899888877 55 4567999999999999998877554
|
|
| >KOG0292|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-35 Score=282.04 Aligned_cols=280 Identities=19% Similarity=0.301 Sum_probs=253.7
Q ss_pred ecCeEEEEeCCCCCEEEEeeCCCcEEEEcCCCCeeEEEeecCCcceeEEEEeeCCCeEEEeeCCCeEEEEEcCCCceeEe
Q psy18231 164 LSGLMHTRFPVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPVRR 243 (540)
Q Consensus 164 ~~~v~~v~~spdg~~lat~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~ 243 (540)
...|..++|+|...+++++-..|.|++||..-+.++..|..|.++|..++|+|+..++++|+.|-.|+||+..+.+++.+
T Consensus 9 SsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclft 88 (1202)
T KOG0292|consen 9 SSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFT 88 (1202)
T ss_pred cccccceecCCCCCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccceehhh
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCceeEEEECCCCCEEEEecCCCcEEEEEecCCCCCCcchhhhhHhhhhcCCceeEEEEeecccccccccCceeeE
Q psy18231 244 WREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHLSNGLLTKL 323 (540)
Q Consensus 244 ~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (540)
+.+|-+.|..+.|++.-.+++++|.|.+|+||+..+.+
T Consensus 89 L~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~------------------------------------------ 126 (1202)
T KOG0292|consen 89 LLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRK------------------------------------------ 126 (1202)
T ss_pred hccccceeEEeeccCCCceEEEccCCCeEEEEeccCCc------------------------------------------
Confidence 99999999999999999999999999999999998876
Q ss_pred EEeeeecccccceeeeeeccceeEEEeecccceecccccccccccchhhhhhcccccEEEEEecC--CeeEeeeCCCeEE
Q psy18231 324 VFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEARDSITSVHVSD--HEILTASLDCRIR 401 (540)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~--~~l~~~~~dg~i~ 401 (540)
++..+.+|...|+|..|+| +.++++|-|.+||
T Consensus 127 ----------------------------------------------~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVR 160 (1202)
T KOG0292|consen 127 ----------------------------------------------CIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVR 160 (1202)
T ss_pred ----------------------------------------------eEEEEecCceEEEeeccCCccceEEEecccceEE
Confidence 3347789999999999999 8999999999999
Q ss_pred EEeCCCCce-----------------------------EEeeeC--CceEEEEEecCCcEEEeecCCCeEEEEeccccc-
Q psy18231 402 RYDIRTGNL-----------------------------VTDYVG--EPIVDACFTRDCQCILTCSTDECLRLFDKATGE- 449 (540)
Q Consensus 402 iwd~~~~~~-----------------------------~~~~~~--~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~- 449 (540)
+||+..-+. .+.+.| ..|+-++|+|.-.++++|+.|..|++|.+..-+
T Consensus 161 VWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKa 240 (1202)
T KOG0292|consen 161 VWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKA 240 (1202)
T ss_pred EEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEeccccc
Confidence 999862110 012223 379999999999999999999999999987654
Q ss_pred -hhhhhccCcCCcceEEEEecCCCCeEEEeeCCCcEEEEEecCCcceeEEEecccceeeeEEEEcCCCcEEEeecCCeeE
Q psy18231 450 -LLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVK 528 (540)
Q Consensus 450 -~~~~~~~~~~~v~~~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~d~~i~ 528 (540)
.+-+.++|.+.|.++ -|+|...++++.|+|++|+|||+...+.+++++ ...+....++-+|..+++++|.|+.+.
T Consensus 241 WEvDtcrgH~nnVssv--lfhp~q~lIlSnsEDksirVwDm~kRt~v~tfr--rendRFW~laahP~lNLfAAgHDsGm~ 316 (1202)
T KOG0292|consen 241 WEVDTCRGHYNNVSSV--LFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFR--RENDRFWILAAHPELNLFAAGHDSGMI 316 (1202)
T ss_pred eeehhhhcccCCcceE--EecCccceeEecCCCccEEEEecccccceeeee--ccCCeEEEEEecCCcceeeeecCCceE
Confidence 467889999999988 899999999999999999999999999999998 677889999999999999888888888
Q ss_pred EEEcccc
Q psy18231 529 LWTAEED 535 (540)
Q Consensus 529 iw~~~~~ 535 (540)
+|.++.+
T Consensus 317 VFkleRE 323 (1202)
T KOG0292|consen 317 VFKLERE 323 (1202)
T ss_pred EEEEccc
Confidence 9888743
|
|
| >KOG0296|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-35 Score=252.51 Aligned_cols=284 Identities=18% Similarity=0.261 Sum_probs=250.0
Q ss_pred eeeeecCeEEEEeCCCCCEEEEeeCCCcEEEEcCCCCeeEEEeecCCcceeEEEEeeCCCeEEEeeCCCeEEEEEcCCCc
Q psy18231 160 ELFVLSGLMHTRFPVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQ 239 (540)
Q Consensus 160 ~~~h~~~v~~v~~spdg~~lat~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~ 239 (540)
...|+++|.+++.+|+.++++||+.|....||+..++.....+.+|+..|+++.|+.||.+||||..+|.|+||+..++.
T Consensus 60 F~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~ 139 (399)
T KOG0296|consen 60 FDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGG 139 (399)
T ss_pred hhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCc
Confidence 34699999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeEeccccCCceeEEEECCCCCEEEEecCCCcEEEEEecCCCCCCcchhhhhHhhhhcCCceeEEEEeecccccccccCc
Q psy18231 240 PVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHLSNGL 319 (540)
Q Consensus 240 ~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (540)
....+....+.+.=+.|+|.+..|+.|+.||.+.+|.+.+...
T Consensus 140 ~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~------------------------------------- 182 (399)
T KOG0296|consen 140 EQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQAL------------------------------------- 182 (399)
T ss_pred eEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCcce-------------------------------------
Confidence 8888876778888899999999999999999999999987531
Q ss_pred eeeEEEeeeecccccceeeeeeccceeEEEeecccceecccccccccccchhhhhhcccccEEEEEecC--CeeEeeeCC
Q psy18231 320 LTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEARDSITSVHVSD--HEILTASLD 397 (540)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~--~~l~~~~~d 397 (540)
.+.+.+|+.++++=.|.| ++++++..|
T Consensus 183 ---------------------------------------------------~kv~~Gh~~~ct~G~f~pdGKr~~tgy~d 211 (399)
T KOG0296|consen 183 ---------------------------------------------------CKVMSGHNSPCTCGEFIPDGKRILTGYDD 211 (399)
T ss_pred ---------------------------------------------------eeEecCCCCCcccccccCCCceEEEEecC
Confidence 125678999999999988 899999999
Q ss_pred CeEEEEeCCCCceEEeeeC---CceEEEEEecCCcEEEeecCCCeEEEEeccccchhhhhc--------cCcCCcceEEE
Q psy18231 398 CRIRRYDIRTGNLVTDYVG---EPIVDACFTRDCQCILTCSTDECLRLFDKATGELLEEYK--------GHKSGDFRIEC 466 (540)
Q Consensus 398 g~i~iwd~~~~~~~~~~~~---~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~--------~~~~~v~~~~~ 466 (540)
|+|++||+.+++++..+.+ ....++.++.++..++.|+.++.+++.+..+++.+..+. .+...+.++.+
T Consensus 212 gti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~ 291 (399)
T KOG0296|consen 212 GTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVES 291 (399)
T ss_pred ceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhh
Confidence 9999999999999988874 568889999999999999999999999998888776655 23333333321
Q ss_pred -EecCCCCeEEEeeCCCcEEEEEecCCcceeEEEecccceeeeEEEEcCCCcEEEeec-CCeeEEEEcccc
Q psy18231 467 -CLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC-GNNVKLWTAEED 535 (540)
Q Consensus 467 -~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~-d~~i~iw~~~~~ 535 (540)
.++..=.+.|+|+-||+|.|||+...++...+. |..+|..+.|-+ ..+|++++ ||.|+.||..+|
T Consensus 292 ~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~---he~~V~~l~w~~-t~~l~t~c~~g~v~~wDaRtG 358 (399)
T KOG0296|consen 292 IPSSSKLPLAACGSVDGTIAIYDLAASTLRHICE---HEDGVTKLKWLN-TDYLLTACANGKVRQWDARTG 358 (399)
T ss_pred cccccccchhhcccccceEEEEecccchhheecc---CCCceEEEEEcC-cchheeeccCceEEeeecccc
Confidence 345555678999999999999999988888885 888999999998 78888888 999999999876
|
|
| >KOG0275|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-36 Score=255.33 Aligned_cols=280 Identities=25% Similarity=0.432 Sum_probs=250.1
Q ss_pred eeeecCeEEEEeCCCCCEEEEeeCCCcEEEEcCCCCeeEEEe--------ecCCcceeEEEEeeCCCeEEEeeCCCeEEE
Q psy18231 161 LFVLSGLMHTRFPVDGSYCLTCGSDKKIKLWNPYRNLLLKTY--------GGHAHEVNDATAACDSSQIASGASDKSVIL 232 (540)
Q Consensus 161 ~~h~~~v~~v~~spdg~~lat~~~dg~i~iwd~~~~~~~~~~--------~~h~~~v~~l~~sp~~~~l~s~s~dg~i~i 232 (540)
.+...-+-|..|||||+||++|+.||.|.+||..+|+..+.+ --+..+|.|+.||.|...||+|+.||.|++
T Consensus 210 Fg~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKv 289 (508)
T KOG0275|consen 210 FGQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKV 289 (508)
T ss_pred cccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEE
Confidence 445667889999999999999999999999999999776544 347889999999999999999999999999
Q ss_pred EEcCCCceeEecc-ccCCceeEEEECCCCCEEEEecCCCcEEEEEecCCCCCCcchhhhhHhhhhcCCceeEEEEeeccc
Q psy18231 233 WEVTTGQPVRRWR-EHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKST 311 (540)
Q Consensus 233 wd~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (540)
|.+++|.+++.+. .|...|+|+.|+.|+..+++++.|.++++.-+.+++
T Consensus 290 Wri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK------------------------------ 339 (508)
T KOG0275|consen 290 WRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGK------------------------------ 339 (508)
T ss_pred EEEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccch------------------------------
Confidence 9999999999987 899999999999999999999999999999988877
Q ss_pred ccccccCceeeEEEeeeecccccceeeeeeccceeEEEeecccceecccccccccccchhhhhhcccccEEEEEecC--C
Q psy18231 312 KNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEARDSITSVHVSD--H 389 (540)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~--~ 389 (540)
+++.+.+|...|+...|.+ +
T Consensus 340 ----------------------------------------------------------~LKEfrGHsSyvn~a~ft~dG~ 361 (508)
T KOG0275|consen 340 ----------------------------------------------------------CLKEFRGHSSYVNEATFTDDGH 361 (508)
T ss_pred ----------------------------------------------------------hHHHhcCccccccceEEcCCCC
Confidence 5668899999999999988 8
Q ss_pred eeEeeeCCCeEEEEeCCCCceEEeeeC----CceEEEEEec-CCcEEEeecCCCeEEEEeccccchhhhhccC-cCCcce
Q psy18231 390 EILTASLDCRIRRYDIRTGNLVTDYVG----EPIVDACFTR-DCQCILTCSTDECLRLFDKATGELLEEYKGH-KSGDFR 463 (540)
Q Consensus 390 ~l~~~~~dg~i~iwd~~~~~~~~~~~~----~~i~~~~~sp-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-~~~v~~ 463 (540)
.+++++.||+|++|+.++.+++.++.. -+|+++..-| +...++++...++|+|.++ .|+.+++|... ...--.
T Consensus 362 ~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~-qGQvVrsfsSGkREgGdF 440 (508)
T KOG0275|consen 362 HIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNM-QGQVVRSFSSGKREGGDF 440 (508)
T ss_pred eEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEec-cceEEeeeccCCccCCce
Confidence 999999999999999999999988874 4688887777 5568889999999999998 47777777533 223334
Q ss_pred EEEEecCCCCeEEEeeCCCcEEEEEecCCcceeEEEecccceeeeEEEEcCCCcEEEeec-CCeeEEEE
Q psy18231 464 IECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC-GNNVKLWT 531 (540)
Q Consensus 464 ~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~-d~~i~iw~ 531 (540)
+.++.||.|.++++.++|+.++.+.+.+|+...++. .|...|-.++-+|..+.|++-+ ||.+++|.
T Consensus 441 i~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~--VhEkdvIGl~HHPHqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 441 INAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLP--VHEKDVIGLTHHPHQNLLASYSEDGLLKLWK 507 (508)
T ss_pred EEEEecCCCcEEEEEccCcEEEEEEeecCceeeeee--cccccccccccCcccchhhhhcccchhhhcC
Confidence 666899999999999999999999999999999999 8999999999999999999999 99999996
|
|
| >KOG0643|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-35 Score=244.20 Aligned_cols=290 Identities=23% Similarity=0.347 Sum_probs=240.5
Q ss_pred eeeeecCeEEEEeCCCCCEEEEeeCCCcEEEEcCCCCeeEEEeecCCcceeEEEEeeCCCeEEEeeCCCeEEEEEcCCCc
Q psy18231 160 ELFVLSGLMHTRFPVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQ 239 (540)
Q Consensus 160 ~~~h~~~v~~v~~spdg~~lat~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~ 239 (540)
..+|+++++.+.|+.+|.+|.+++.|.+..||-..+|+.+-++.||++.|+|+...-+.++++||+.|.++++||+++|+
T Consensus 6 l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk 85 (327)
T KOG0643|consen 6 LQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGK 85 (327)
T ss_pred cccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCCc
Confidence 45799999999999999999999999999999998999999999999999999999999999999999999999999999
Q ss_pred eeEeccccCCceeEEEECCCCCEEEEecC-----CCcEEEEEecCCCCCCcchhhhhHhhhhcCCceeEEEEeecccccc
Q psy18231 240 PVRRWREHASKVTCVKFNEDSSVVISGSQ-----DNTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNH 314 (540)
Q Consensus 240 ~~~~~~~h~~~v~~~~~~~~~~~l~s~~~-----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (540)
++..++ ...+|..+.|+++|++++.... .+.|.++|++.......
T Consensus 86 ~la~~k-~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~----------------------------- 135 (327)
T KOG0643|consen 86 QLATWK-TNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDID----------------------------- 135 (327)
T ss_pred EEEEee-cCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhc-----------------------------
Confidence 999885 5778999999999998776643 35789999886542000
Q ss_pred cccCceeeEEEeeeecccccceeeeeeccceeEEEeecccceecccccccccccchhhhhhcccccEEEEEecC--CeeE
Q psy18231 315 LSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEARDSITSVHVSD--HEIL 392 (540)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~--~~l~ 392 (540)
...+...+..+...++..-|.| +.++
T Consensus 136 ----------------------------------------------------s~ep~~kI~t~~skit~a~Wg~l~~~ii 163 (327)
T KOG0643|consen 136 ----------------------------------------------------SEEPYLKIPTPDSKITSALWGPLGETII 163 (327)
T ss_pred ----------------------------------------------------ccCceEEecCCccceeeeeecccCCEEE
Confidence 0111224445668889999999 8999
Q ss_pred eeeCCCeEEEEeCCCCceEEe---eeCCceEEEEEecCCcEEEeecCCCeEEEEeccccchhhhhccCcCCcceEEEEec
Q psy18231 393 TASLDCRIRRYDIRTGNLVTD---YVGEPIVDACFTRDCQCILTCSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLD 469 (540)
Q Consensus 393 ~~~~dg~i~iwd~~~~~~~~~---~~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~s 469 (540)
+|..||.|.+||.++++.... .+.+.|+.++++||..++++++.|.+-++||+.+.+.++++... .++++. +++
T Consensus 164 ~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~te-~PvN~a--ais 240 (327)
T KOG0643|consen 164 AGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYTTE-RPVNTA--AIS 240 (327)
T ss_pred EecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccceeeeccceeeEEEeeec-ccccce--ecc
Confidence 999999999999999865433 34578999999999999999999999999999999999988744 467776 788
Q ss_pred CCCCeEEEeeCCCc--E------------EEEEecCCcceeEEEecccceeeeEEEEcCCCcEEEeec-CCeeEEEEccc
Q psy18231 470 SKDSQIFCGSSDGK--I------------YKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC-GNNVKLWTAEE 534 (540)
Q Consensus 470 ~~~~~l~s~s~dg~--i------------~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~-d~~i~iw~~~~ 534 (540)
|....++.|+.... | ++|++-..+.+...+ +|-++|++++|+|+|+..++|+ ||.|++..++.
T Consensus 241 P~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvk--GHFGPINsvAfhPdGksYsSGGEDG~VR~h~Fd~ 318 (327)
T KOG0643|consen 241 PLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVK--GHFGPINSVAFHPDGKSYSSGGEDGYVRLHHFDS 318 (327)
T ss_pred cccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhcccc--ccccCcceeEECCCCcccccCCCCceEEEEEecc
Confidence 88777777653221 1 222222234566667 9999999999999999999999 99999998876
Q ss_pred cc
Q psy18231 535 DY 536 (540)
Q Consensus 535 ~~ 536 (540)
.|
T Consensus 319 ~Y 320 (327)
T KOG0643|consen 319 NY 320 (327)
T ss_pred ch
Confidence 54
|
|
| >KOG0285|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-35 Score=252.45 Aligned_cols=247 Identities=21% Similarity=0.379 Sum_probs=228.4
Q ss_pred eeEEEeecCCcceeEEEEeeCCCeEEEeeCCCeEEEEEcCCCceeEeccccCCceeEEEECCCCCEEEEecCCCcEEEEE
Q psy18231 197 LLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWD 276 (540)
Q Consensus 197 ~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd 276 (540)
++.+.+++|.+.|.|+++.|.+.++++|+.|++|+|||+.+|++..++.+|-..|..+++++--.|+++++.|+.|+.||
T Consensus 142 Kl~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwD 221 (460)
T KOG0285|consen 142 KLYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWD 221 (460)
T ss_pred eehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEEEe
Confidence 45567789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCCcchhhhhHhhhhcCCceeEEEEeecccccccccCceeeEEEeeeecccccceeeeeeccceeEEEeecccce
Q psy18231 277 VKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGST 356 (540)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (540)
++..+
T Consensus 222 Le~nk--------------------------------------------------------------------------- 226 (460)
T KOG0285|consen 222 LEYNK--------------------------------------------------------------------------- 226 (460)
T ss_pred chhhh---------------------------------------------------------------------------
Confidence 98876
Q ss_pred ecccccccccccchhhhhhcccccEEEEEecC--CeeEeeeCCCeEEEEeCCCCceEEeeeC--CceEEEEEecCCcEEE
Q psy18231 357 QIGDVTPISIHNSCFQALKEARDSITSVHVSD--HEILTASLDCRIRRYDIRTGNLVTDYVG--EPIVDACFTRDCQCIL 432 (540)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~--~~i~~~~~sp~~~~l~ 432 (540)
.++...+|-..|.+++.+| +.|++|+.|.++++||+++...+..+.+ .+|.++.+.|-...++
T Consensus 227 -------------vIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvi 293 (460)
T KOG0285|consen 227 -------------VIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVI 293 (460)
T ss_pred -------------hHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceE
Confidence 4557889999999999999 8999999999999999999999999987 4799999999888999
Q ss_pred eecCCCeEEEEeccccchhhhhccCcCCcceEEEEecCCCCeEEEeeCCCcEEEEEecCCcceeEEEecccceeeeEEEE
Q psy18231 433 TCSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCS 512 (540)
Q Consensus 433 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~ 512 (540)
+|+.|++|++||++.++...++..|...+.++ +.+|....+|+++.|. |+-|++..+..+..+. +|++.|++++.
T Consensus 294 t~S~D~tvrlWDl~agkt~~tlt~hkksvral--~lhP~e~~fASas~dn-ik~w~~p~g~f~~nls--gh~~iintl~~ 368 (460)
T KOG0285|consen 294 TGSHDSTVRLWDLRAGKTMITLTHHKKSVRAL--CLHPKENLFASASPDN-IKQWKLPEGEFLQNLS--GHNAIINTLSV 368 (460)
T ss_pred EecCCceEEEeeeccCceeEeeecccceeeEE--ecCCchhhhhccCCcc-ceeccCCccchhhccc--cccceeeeeee
Confidence 99999999999999999999999999888877 8999999999999874 9999999999999988 99999999999
Q ss_pred cCCCcEEEeec-CCeeEEEEcccccC
Q psy18231 513 HPTRKHIMSAC-GNNVKLWTAEEDYG 537 (540)
Q Consensus 513 s~d~~~l~s~~-d~~i~iw~~~~~~~ 537 (540)
..|+ ++++|+ .|.+.+||.++++.
T Consensus 369 nsD~-v~~~G~dng~~~fwdwksg~n 393 (460)
T KOG0285|consen 369 NSDG-VLVSGGDNGSIMFWDWKSGHN 393 (460)
T ss_pred ccCc-eEEEcCCceEEEEEecCcCcc
Confidence 8776 566677 89999999998864
|
|
| >KOG1407|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-34 Score=235.93 Aligned_cols=281 Identities=14% Similarity=0.199 Sum_probs=241.7
Q ss_pred eeeeeecCeEEEEeCCCCCEEEEeeCCCcEEEEcCCCCeeEEEe--ecCCcceeEEEEee-CCCeEEEeeCCCeEEEEEc
Q psy18231 159 RELFVLSGLMHTRFPVDGSYCLTCGSDKKIKLWNPYRNLLLKTY--GGHAHEVNDATAAC-DSSQIASGASDKSVILWEV 235 (540)
Q Consensus 159 ~~~~h~~~v~~v~~spdg~~lat~~~dg~i~iwd~~~~~~~~~~--~~h~~~v~~l~~sp-~~~~l~s~s~dg~i~iwd~ 235 (540)
...+|...|.+++|+.+|..|++|+.|+++.+|+++..+....+ .+|.+.|-.++|+| ...++++++.|.+|++||+
T Consensus 15 ~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~ 94 (313)
T KOG1407|consen 15 ELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDI 94 (313)
T ss_pred HhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEEe
Confidence 34578999999999999999999999999999999887655543 68999999999998 6678999999999999999
Q ss_pred CCCceeEeccccCCceeEEEECCCCCEEEEecCCCcEEEEEecCCCCCCcchhhhhHhhhhcCCceeEEEEeeccccccc
Q psy18231 236 TTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHL 315 (540)
Q Consensus 236 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (540)
+.+++...+....+.+. +.|+|+|++++.++.|..|.+.|.++.+...
T Consensus 95 r~~k~~~~i~~~~eni~-i~wsp~g~~~~~~~kdD~it~id~r~~~~~~------------------------------- 142 (313)
T KOG1407|consen 95 RSGKCTARIETKGENIN-ITWSPDGEYIAVGNKDDRITFIDARTYKIVN------------------------------- 142 (313)
T ss_pred ccCcEEEEeeccCcceE-EEEcCCCCEEEEecCcccEEEEEecccceee-------------------------------
Confidence 99999998866555554 7899999999999999999999998876211
Q ss_pred ccCceeeEEEeeeecccccceeeeeeccceeEEEeecccceecccccccccccchhhhhhcccccEEEEEecC--CeeEe
Q psy18231 316 SNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEARDSITSVHVSD--HEILT 393 (540)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~--~~l~~ 393 (540)
.......+..++|+. ++++.
T Consensus 143 ----------------------------------------------------------~~~~~~e~ne~~w~~~nd~Ffl 164 (313)
T KOG1407|consen 143 ----------------------------------------------------------EEQFKFEVNEISWNNSNDLFFL 164 (313)
T ss_pred ----------------------------------------------------------hhcccceeeeeeecCCCCEEEE
Confidence 011223445566654 77777
Q ss_pred eeCCCeEEEEeCCCCceEEeeeCCc--eEEEEEecCCcEEEeecCCCeEEEEeccccchhhhhccCcCCcceEEEEecCC
Q psy18231 394 ASLDCRIRRYDIRTGNLVTDYVGEP--IVDACFTRDCQCILTCSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSK 471 (540)
Q Consensus 394 ~~~dg~i~iwd~~~~~~~~~~~~~~--i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~s~~ 471 (540)
....|+|.|.....-++++.+..|+ ..|+.|+|+|++||+|+.|-.+.+||+...-+++.+..+.-+|..+ .||.|
T Consensus 165 t~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTl--SFS~d 242 (313)
T KOG1407|consen 165 TNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDWPVRTL--SFSHD 242 (313)
T ss_pred ecCCceEEEEeccccccccccccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeeccccCceEEE--EeccC
Confidence 7778999999999999999998765 6677899999999999999999999999999999999999999988 89999
Q ss_pred CCeEEEeeCCCcEEEEEecCCcceeEEEecccceeeeEEEEcCCCcEEEeec-C---------CeeEEEEccc
Q psy18231 472 DSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC-G---------NNVKLWTAEE 534 (540)
Q Consensus 472 ~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~-d---------~~i~iw~~~~ 534 (540)
|++||+||+|..|-|=++++|..+..++ +.++...++|+|...+||-+. | |+|+++-+++
T Consensus 243 g~~lASaSEDh~IDIA~vetGd~~~eI~---~~~~t~tVAWHPk~~LLAyA~ddk~~d~~reag~vKiFG~~~ 312 (313)
T KOG1407|consen 243 GRMLASASEDHFIDIAEVETGDRVWEIP---CEGPTFTVAWHPKRPLLAYACDDKDGDSNREAGTVKIFGLSN 312 (313)
T ss_pred cceeeccCccceEEeEecccCCeEEEee---ccCCceeEEecCCCceeeEEecCCCCccccccceeEEecCCC
Confidence 9999999999999999999999999996 889999999999999998775 3 5788887654
|
|
| >KOG0266|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-34 Score=279.40 Aligned_cols=273 Identities=28% Similarity=0.491 Sum_probs=234.5
Q ss_pred cceeccccchhhhhhcccccceeeeecccccc-----eeeeeecCeEEEEeCCCCCEEEEeeCCCcEEEEcC-CCCeeEE
Q psy18231 127 PLLFSLPRTITRILYELPKEWSIRVYRPLTVN-----RELFVLSGLMHTRFPVDGSYCLTCGSDKKIKLWNP-YRNLLLK 200 (540)
Q Consensus 127 ~~~~s~~~~~~~~~~~~~~~~~i~~~~~~~~~-----~~~~h~~~v~~v~~spdg~~lat~~~dg~i~iwd~-~~~~~~~ 200 (540)
...|+++. ..++..+.+..+++|...... ...+|...|+.++|+||++++++++.|++|+|||+ ..+..++
T Consensus 164 ~~~fs~~g---~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~ 240 (456)
T KOG0266|consen 164 CVDFSPDG---RALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLK 240 (456)
T ss_pred EEEEcCCC---CeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEeeccCCCeEEE
Confidence 34555553 336777889999999983332 23579999999999999999999999999999999 5668999
Q ss_pred EeecCCcceeEEEEeeCCCeEEEeeCCCeEEEEEcCCCceeEeccccCCceeEEEECCCCCEEEEecCCCcEEEEEecCC
Q psy18231 201 TYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSR 280 (540)
Q Consensus 201 ~~~~h~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~ 280 (540)
++++|...|++++|+|+++++++|+.|++|+|||+++++++..+.+|.+.|++++|++++++|++++.||.|++||+.++
T Consensus 241 ~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~ 320 (456)
T KOG0266|consen 241 TLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETG 320 (456)
T ss_pred EecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcCCCccEEEEECCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred CCCCcchhhhhHhhhhcCCceeEEEEeecccccccccCceeeEEEeeeecccccceeeeeeccceeEEEeecccceeccc
Q psy18231 281 SHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGD 360 (540)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (540)
...
T Consensus 321 ~~~----------------------------------------------------------------------------- 323 (456)
T KOG0266|consen 321 SKL----------------------------------------------------------------------------- 323 (456)
T ss_pred cee-----------------------------------------------------------------------------
Confidence 621
Q ss_pred ccccccccchhhhhhcccc--cEEEEEecC--CeeEeeeCCCeEEEEeCCCCceEEeeeCCc-----eEEEEEecCCcEE
Q psy18231 361 VTPISIHNSCFQALKEARD--SITSVHVSD--HEILTASLDCRIRRYDIRTGNLVTDYVGEP-----IVDACFTRDCQCI 431 (540)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~--~v~~l~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-----i~~~~~sp~~~~l 431 (540)
+...+..+.. .++++.|+| .++++++.|+.+++||+..+..+..+.++. +.+...++.+.++
T Consensus 324 ---------~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 394 (456)
T KOG0266|consen 324 ---------CLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGKLI 394 (456)
T ss_pred ---------eeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCCcceeEecccccCCCCeE
Confidence 0012222322 589999998 899999999999999999999988887643 3445567899999
Q ss_pred EeecCCCeEEEEeccccchhhhhccC-cCCcceEEEEecCCCCeEEEee--CCCcEEEEEec
Q psy18231 432 LTCSTDECLRLFDKATGELLEEYKGH-KSGDFRIECCLDSKDSQIFCGS--SDGKIYKWQLV 490 (540)
Q Consensus 432 ~~~~~dg~i~i~d~~~~~~~~~~~~~-~~~v~~~~~~~s~~~~~l~s~s--~dg~i~iwd~~ 490 (540)
++|+.|+.|++||..++..+..+.+| ...+..+ .+++...++++++ .|+.+++|...
T Consensus 395 ~sg~~d~~v~~~~~~s~~~~~~l~~h~~~~~~~~--~~~~~~~~~~s~s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 395 YSGSEDGSVYVWDSSSGGILQRLEGHSKAAVSDL--SSHPTENLIASSSFEGDGLIRLWKYD 454 (456)
T ss_pred EEEeCCceEEEEeCCccchhhhhcCCCCCceecc--ccCCCcCeeeecCcCCCceEEEecCC
Confidence 99999999999999999999999999 6666555 8999999999998 78899999753
|
|
| >KOG0288|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-35 Score=258.89 Aligned_cols=282 Identities=24% Similarity=0.379 Sum_probs=243.4
Q ss_pred eeeeeecCeEEEEeCCCCCEEEEeeCCCcEEEEcCCCCe--eEEEeecCCcceeEEEEeeCCCeEEEeeCCCeEEEEEcC
Q psy18231 159 RELFVLSGLMHTRFPVDGSYCLTCGSDKKIKLWNPYRNL--LLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVT 236 (540)
Q Consensus 159 ~~~~h~~~v~~v~~spdg~~lat~~~dg~i~iwd~~~~~--~~~~~~~h~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~ 236 (540)
....|.+.+..+.|-++...|++|+.|..|++|+...++ .+.++.+..++|+++.|.++++++++++.|+.+++|++.
T Consensus 170 ~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd 249 (459)
T KOG0288|consen 170 VLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVD 249 (459)
T ss_pred hhhccccccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCceeeeecc
Confidence 345699999999999998899999999999999987665 677888888999999999999999999999999999999
Q ss_pred CCceeEeccccCCceeEEEECCCCCEEEEecCCCcEEEEEecCCCCCCcchhhhhHhhhhcCCceeEEEEeecccccccc
Q psy18231 237 TGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHLS 316 (540)
Q Consensus 237 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (540)
+.+...++.+|++.|+++.|......+++|+.|.+|+.||+....+....
T Consensus 250 ~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~------------------------------ 299 (459)
T KOG0288|consen 250 SLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTV------------------------------ 299 (459)
T ss_pred chhhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhheeccc------------------------------
Confidence 99999999999999999999887767999999999999999875421100
Q ss_pred cCceeeEEEeeeecccccceeeeeeccceeEEEeecccceecccccccccccchhhhhhcccccEEEEEecCCeeEeeeC
Q psy18231 317 NGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEARDSITSVHVSDHEILTASL 396 (540)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~ 396 (540)
-....+..|..++..+++|..
T Consensus 300 -----------------------------------------------------------l~~S~cnDI~~~~~~~~SgH~ 320 (459)
T KOG0288|consen 300 -----------------------------------------------------------LPGSQCNDIVCSISDVISGHF 320 (459)
T ss_pred -----------------------------------------------------------cccccccceEecceeeeeccc
Confidence 012334455666778899999
Q ss_pred CCeEEEEeCCCCceEEeeeC-CceEEEEEecCCcEEEeecCCCeEEEEeccccchhhhhccCc----CCcceEEEEecCC
Q psy18231 397 DCRIRRYDIRTGNLVTDYVG-EPIVDACFTRDCQCILTCSTDECLRLFDKATGELLEEYKGHK----SGDFRIECCLDSK 471 (540)
Q Consensus 397 dg~i~iwd~~~~~~~~~~~~-~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~----~~v~~~~~~~s~~ 471 (540)
|++|++||.++..+...... +.|+++..+++|..|.+++.|.++.+.|+++.+....+.+.. ...+.+ .|||+
T Consensus 321 DkkvRfwD~Rs~~~~~sv~~gg~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrv--vfSpd 398 (459)
T KOG0288|consen 321 DKKVRFWDIRSADKTRSVPLGGRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRV--VFSPD 398 (459)
T ss_pred ccceEEEeccCCceeeEeecCcceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeecccccccccccee--EECCC
Confidence 99999999999999888874 689999999999999999999999999999988776665422 123334 89999
Q ss_pred CCeEEEeeCCCcEEEEEecCCcceeEEEecccceeeeEEEEcCCCcEEEeec-CCeeEEEE
Q psy18231 472 DSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC-GNNVKLWT 531 (540)
Q Consensus 472 ~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~-d~~i~iw~ 531 (540)
+.|+++||.||.|+||++.++++...+........|++++|+|.|..|++++ ++.+.+|.
T Consensus 399 ~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW~ 459 (459)
T KOG0288|consen 399 GSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLWT 459 (459)
T ss_pred CceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccCCcceEecC
Confidence 9999999999999999999999999998544444799999999999999999 99999993
|
|
| >KOG0292|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-34 Score=271.35 Aligned_cols=340 Identities=17% Similarity=0.236 Sum_probs=257.9
Q ss_pred ccchhhhhhcccccceeeeecccccc---eeeeeecCeEEEEeCCCCCEEEEeeCCCcEEEEcCCCCeeEEEeecCCcce
Q psy18231 133 PRTITRILYELPKEWSIRVYRPLTVN---RELFVLSGLMHTRFPVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEV 209 (540)
Q Consensus 133 ~~~~~~~~~~~~~~~~i~~~~~~~~~---~~~~h~~~v~~v~~spdg~~lat~~~dg~i~iwd~~~~~~~~~~~~h~~~v 209 (540)
.++...++.+ -..+.|++|+..-.. +...|.++|..++|+|++.++++||.|-.|+||+.++.+++.++.||-+-|
T Consensus 18 HP~rPwILts-lHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclftL~GHlDYV 96 (1202)
T KOG0292|consen 18 HPKRPWILTS-LHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFTLLGHLDYV 96 (1202)
T ss_pred CCCCCEEEEe-ecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccceehhhhcccccee
Confidence 3333444433 556789999986643 556799999999999999999999999999999999999999999999999
Q ss_pred eEEEEeeCCCeEEEeeCCCeEEEEEcCCCceeEeccccCCceeEEEECCCCCEEEEecCCCcEEEEEecCCCCCCcchhh
Q psy18231 210 NDATAACDSSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQVRC 289 (540)
Q Consensus 210 ~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 289 (540)
..+.|++.-.+++++|.|.+|+||++.+++++..+.+|...|.|..|+|....++++|-|.+|++||+..-+........
T Consensus 97 Rt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~ 176 (1202)
T KOG0292|consen 97 RTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGS 176 (1202)
T ss_pred EEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecccceEEEEeecchhccCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999875532222111
Q ss_pred hhHhhhhcCCceeEEEEeecccccccccCceeeEEEeeeecccccceeeeeeccceeEEEeecccceecccccccccccc
Q psy18231 290 LNEALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNS 369 (540)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (540)
++....+... ..+..|+. .--
T Consensus 177 ~e~~~~~~~~-------------------------------------------------~~dLfg~~----------DaV 197 (1202)
T KOG0292|consen 177 LEDQMRGQQG-------------------------------------------------NSDLFGQT----------DAV 197 (1202)
T ss_pred chhhhhcccc-------------------------------------------------chhhcCCc----------Cee
Confidence 1111110000 00000000 000
Q ss_pred hhhhhhcccccEEEEEecC--CeeEeeeCCCeEEEEeCCCCce--EEeeeC--CceEEEEEecCCcEEEeecCCCeEEEE
Q psy18231 370 CFQALKEARDSITSVHVSD--HEILTASLDCRIRRYDIRTGNL--VTDYVG--EPIVDACFTRDCQCILTCSTDECLRLF 443 (540)
Q Consensus 370 ~~~~~~~~~~~v~~l~~~~--~~l~~~~~dg~i~iwd~~~~~~--~~~~~~--~~i~~~~~sp~~~~l~~~~~dg~i~i~ 443 (540)
....+.+|...|.-++|+| .++++|+.|..|++|.+...+. +.+..+ +.|.++-|+|..+++++.++|++|++|
T Consensus 198 VK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVw 277 (1202)
T KOG0292|consen 198 VKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVW 277 (1202)
T ss_pred eeeeecccccccceEEecCCcceEEecCCcceeeEEEeccccceeehhhhcccCCcceEEecCccceeEecCCCccEEEE
Confidence 1237789999999999999 8999999999999999876543 233334 589999999999999999999999999
Q ss_pred eccccchhhhhccCcCCcceEEEEecCCCCeEEEeeCCCcEEEEEecCCcc-----------------------------
Q psy18231 444 DKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQ----------------------------- 494 (540)
Q Consensus 444 d~~~~~~~~~~~~~~~~v~~~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~----------------------------- 494 (540)
|+...+.+.+|+.....-+.+ +.+|..+++++|- |+-+.||.++..++
T Consensus 278 Dm~kRt~v~tfrrendRFW~l--aahP~lNLfAAgH-DsGm~VFkleRErpa~~v~~n~LfYvkd~~i~~~d~~t~~d~~ 354 (1202)
T KOG0292|consen 278 DMTKRTSVQTFRRENDRFWIL--AAHPELNLFAAGH-DSGMIVFKLERERPAYAVNGNGLFYVKDRFIRSYDLRTQKDTA 354 (1202)
T ss_pred ecccccceeeeeccCCeEEEE--EecCCcceeeeec-CCceEEEEEcccCceEEEcCCEEEEEccceEEeeeccccccce
Confidence 999999999998888888888 7888887777664 44455665542211
Q ss_pred eeEEEec-ccceeeeEEEEcCCCcEEEee-c--CCeeEEEEcccc
Q psy18231 495 ISTLIHS-VGKAVVNSLCSHPTRKHIMSA-C--GNNVKLWTAEED 535 (540)
Q Consensus 495 ~~~~~~~-~~~~~v~~l~~s~d~~~l~s~-~--d~~i~iw~~~~~ 535 (540)
+..++.. ....++.++.++|....+..+ . .+..-++.+...
T Consensus 355 v~~lr~~g~~~~~~~smsYNpae~~vlics~~~n~~y~L~~ipk~ 399 (1202)
T KOG0292|consen 355 VASLRRPGTLWQPPRSLSYNPAENAVLICSNLDNGEYELVQIPKD 399 (1202)
T ss_pred eEeccCCCcccCCcceeeeccccCeEEEEeccCCCeEEEEEecCc
Confidence 1111110 012578889999976554444 4 456666666554
|
|
| >KOG0306|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-34 Score=265.60 Aligned_cols=292 Identities=19% Similarity=0.291 Sum_probs=256.7
Q ss_pred eeeeecCeEEEEeCCCCCEEEEeeCCCcEEEEcCCCCeeEEEeecCCcceeEEEEeeCCCeEEEeeCCCeEEEEEcCCCc
Q psy18231 160 ELFVLSGLMHTRFPVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQ 239 (540)
Q Consensus 160 ~~~h~~~v~~v~~spdg~~lat~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~ 239 (540)
..+|...|.++++|.|...+++|+ .+.+++|+..+.++++++.. +.+.+..|.|.++++++|...|.+.++|+.+..
T Consensus 369 ~~GHR~dVRsl~vS~d~~~~~Sga-~~SikiWn~~t~kciRTi~~--~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~ 445 (888)
T KOG0306|consen 369 IGGHRSDVRSLCVSSDSILLASGA-GESIKIWNRDTLKCIRTITC--GYILASKFVPGDRYIVLGTKNGELQVFDLASAS 445 (888)
T ss_pred eccchhheeEEEeecCceeeeecC-CCcEEEEEccCcceeEEecc--ccEEEEEecCCCceEEEeccCCceEEEEeehhh
Confidence 457999999999999998888876 68999999999999999974 489999999999999999999999999999999
Q ss_pred eeEeccccCCceeEEEECCCCCEEEEecCCCcEEEEEecCCCCCCcchhhhhHhhhhcCCceeEEEEeecccccccccCc
Q psy18231 240 PVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHLSNGL 319 (540)
Q Consensus 240 ~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (540)
.+.++++|.+.|+.++.+||+..+++||.|.+|++||..-....+-.
T Consensus 446 l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt--------------------------------- 492 (888)
T KOG0306|consen 446 LVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGT--------------------------------- 492 (888)
T ss_pred hhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcc---------------------------------
Confidence 99999999999999999999999999999999999998643210000
Q ss_pred eeeEEEeeeecccccceeeeeeccceeEEEeecccceecccccccccccchhhhhhcccccEEEEEecC--CeeEeeeCC
Q psy18231 320 LTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEARDSITSVHVSD--HEILTASLD 397 (540)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~--~~l~~~~~d 397 (540)
.... ++.. ....-.-.+.|.|++++| .+|+++--|
T Consensus 493 ------------------------~~k~----------------lsl~---~~rtLel~ddvL~v~~Spdgk~LaVsLLd 529 (888)
T KOG0306|consen 493 ------------------------QKKV----------------LSLK---HTRTLELEDDVLCVSVSPDGKLLAVSLLD 529 (888)
T ss_pred ------------------------ccee----------------eeec---cceEEeccccEEEEEEcCCCcEEEEEecc
Confidence 0000 0000 001123357899999998 889999999
Q ss_pred CeEEEEeCCCCceEEeeeCC--ceEEEEEecCCcEEEeecCCCeEEEEeccccchhhhhccCcCCcceEEEEecCCCCeE
Q psy18231 398 CRIRRYDIRTGNLVTDYVGE--PIVDACFTRDCQCILTCSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQI 475 (540)
Q Consensus 398 g~i~iwd~~~~~~~~~~~~~--~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~s~~~~~l 475 (540)
.++++|-+++-+...++.|| ||.|+.+|||++++++|+.|..|++|-+.=|.+-+.+-+|...|.++ .|-|+..++
T Consensus 530 nTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~fAHdDSvm~V--~F~P~~~~F 607 (888)
T KOG0306|consen 530 NTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFAHDDSVMSV--QFLPKTHLF 607 (888)
T ss_pred CeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccccchhhhhhhcccCceeEE--EEcccceeE
Confidence 99999999999998888886 89999999999999999999999999999999999999999999888 788999999
Q ss_pred EEeeCCCcEEEEEecCCcceeEEEecccceeeeEEEEcCCCcEEEeec-CCeeEEEEccc
Q psy18231 476 FCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC-GNNVKLWTAEE 534 (540)
Q Consensus 476 ~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~-d~~i~iw~~~~ 534 (540)
.++|.|+.|+-||-..-+.++.+. +|...|.+++.+|+|.++++++ |.+|++|.-..
T Consensus 608 Ft~gKD~kvKqWDg~kFe~iq~L~--~H~~ev~cLav~~~G~~vvs~shD~sIRlwE~td 665 (888)
T KOG0306|consen 608 FTCGKDGKVKQWDGEKFEEIQKLD--GHHSEVWCLAVSPNGSFVVSSSHDKSIRLWERTD 665 (888)
T ss_pred EEecCcceEEeechhhhhhheeec--cchheeeeeEEcCCCCeEEeccCCceeEeeeccC
Confidence 999999999999999999999999 9999999999999999999999 99999998755
|
|
| >KOG0276|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-34 Score=260.53 Aligned_cols=297 Identities=16% Similarity=0.225 Sum_probs=249.1
Q ss_pred cccceeeeecccccce---eeeeecCeEEEEeCCCCCEEEEeeCCCcEEEEcCCCCeeEEEeecCCcceeEEEEeeCCCe
Q psy18231 144 PKEWSIRVYRPLTVNR---ELFVLSGLMHTRFPVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQ 220 (540)
Q Consensus 144 ~~~~~i~~~~~~~~~~---~~~h~~~v~~v~~spdg~~lat~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~ 220 (540)
-..+.+.+|+..++.- .....-+|.+..|-+..+++++|+.|..|+||+..+++.++.|..|.+-|.+++.+|...+
T Consensus 32 LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~ekV~~FeAH~DyIR~iavHPt~P~ 111 (794)
T KOG0276|consen 32 LYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGEKVKTFEAHSDYIRSIAVHPTLPY 111 (794)
T ss_pred eecCeeEEEecccceeeeeeeecccchhhheeeeccceEEEecCCceEEEEecccceeeEEeeccccceeeeeecCCCCe
Confidence 3456789999887542 2335578999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeeCCCeEEEEEcCCC-ceeEeccccCCceeEEEECC-CCCEEEEecCCCcEEEEEecCCCCCCcchhhhhHhhhhcC
Q psy18231 221 IASGASDKSVILWEVTTG-QPVRRWREHASKVTCVKFNE-DSSVVISGSQDNTVMMWDVKSRSHHPIQVRCLNEALKEAR 298 (540)
Q Consensus 221 l~s~s~dg~i~iwd~~~~-~~~~~~~~h~~~v~~~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 298 (540)
++|+|.|-+|++||.+.+ .+.+++.+|...|.+++|+| |.+.+++++-|++|++|.+.+..
T Consensus 112 vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~----------------- 174 (794)
T KOG0276|consen 112 VLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPH----------------- 174 (794)
T ss_pred EEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCC-----------------
Confidence 999999999999999875 67788999999999999999 77899999999999999997765
Q ss_pred CceeEEEEeecccccccccCceeeEEEeeeecccccceeeeeeccceeEEEeecccceecccccccccccchhhhhhccc
Q psy18231 299 DSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEAR 378 (540)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (540)
+..++.+|.
T Consensus 175 -----------------------------------------------------------------------~nfTl~gHe 183 (794)
T KOG0276|consen 175 -----------------------------------------------------------------------PNFTLEGHE 183 (794)
T ss_pred -----------------------------------------------------------------------Cceeeeccc
Confidence 123788999
Q ss_pred ccEEEEEecC----CeeEeeeCCCeEEEEeCCCCceEEeeeC--CceEEEEEecCCcEEEeecCCCeEEEEeccccchhh
Q psy18231 379 DSITSVHVSD----HEILTASLDCRIRRYDIRTGNLVTDYVG--EPIVDACFTRDCQCILTCSTDECLRLFDKATGELLE 452 (540)
Q Consensus 379 ~~v~~l~~~~----~~l~~~~~dg~i~iwd~~~~~~~~~~~~--~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~ 452 (540)
..|.|+.+-+ .++++|+.|.+|++||.++..+++++.+ +.|..+.|+|.-.++++|++||+++||+..+.+...
T Consensus 184 kGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~ 263 (794)
T KOG0276|consen 184 KGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHPELPIIISGSEDGTVRIWNSKTYKLEK 263 (794)
T ss_pred cCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccccceEEEecCCCcEEEEecCCccEEEecCcceehhh
Confidence 9999999977 5999999999999999999999999987 579999999999999999999999999999999988
Q ss_pred hhccCcCCcceEEEEecCCCCeEEEeeCCCcEEEEEecCCcceeEEEe-------------------c------------
Q psy18231 453 EYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIH-------------------S------------ 501 (540)
Q Consensus 453 ~~~~~~~~v~~~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~-------------------~------------ 501 (540)
++.-.-++++++ +..+.++.++.|..+|.|.+ .+-..++...+.. .
T Consensus 264 tLn~gleRvW~I--~~~k~~~~i~vG~Deg~i~v-~lgreeP~vsMd~~gKIiwa~~~ei~~~~~ks~~~~~ev~DgErL 340 (794)
T KOG0276|consen 264 TLNYGLERVWCI--AAHKGDGKIAVGFDEGSVTV-KLGREEPAVSMDSNGKIIWAVHSEIQAVNLKSVGAQKEVTDGERL 340 (794)
T ss_pred hhhcCCceEEEE--eecCCCCeEEEeccCCcEEE-EccCCCCceeecCCccEEEEcCceeeeeeceeccCcccccCCccc
Confidence 888888888888 66677777888887776643 2222111111100 0
Q ss_pred --------ccceeeeEEEEcCCCcEEEeecCCeeEEEE
Q psy18231 502 --------VGKAVVNSLCSHPTRKHIMSACGNNVKLWT 531 (540)
Q Consensus 502 --------~~~~~v~~l~~s~d~~~l~s~~d~~i~iw~ 531 (540)
.-.-....++-||+|++++.++||.-.||.
T Consensus 341 ~LsvKeLgs~eiyPq~L~hsPNGrfV~VcgdGEyiIyT 378 (794)
T KOG0276|consen 341 PLSVKELGSVEIYPQTLAHSPNGRFVVVCGDGEYIIYT 378 (794)
T ss_pred cchhhhccccccchHHhccCCCCcEEEEecCccEEEEE
Confidence 000113457779999999999999888775
|
|
| >KOG0265|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-34 Score=239.44 Aligned_cols=247 Identities=19% Similarity=0.284 Sum_probs=216.7
Q ss_pred eEEEeecCCcceeEEEEeeCCCeEEEeeCCCeEEEEEcC-CCceeEeccccCCceeEEEECCCCCEEEEecCCCcEEEEE
Q psy18231 198 LLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVT-TGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWD 276 (540)
Q Consensus 198 ~~~~~~~h~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~-~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd 276 (540)
++..+.+|++.|+.+.|+|+|.+||||+.|..|.+|++. .-+....+++|.+.|..+.|.+|++.++++|.|++++.||
T Consensus 39 p~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD 118 (338)
T KOG0265|consen 39 PIMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWD 118 (338)
T ss_pred hhhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEEe
Confidence 445668999999999999999999999999999999964 3455667889999999999999999999999999999999
Q ss_pred ecCCCCCCcchhhhhHhhhhcCCceeEEEEeecccccccccCceeeEEEeeeecccccceeeeeeccceeEEEeecccce
Q psy18231 277 VKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGST 356 (540)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (540)
.++++.
T Consensus 119 ~~tG~~-------------------------------------------------------------------------- 124 (338)
T KOG0265|consen 119 AETGKR-------------------------------------------------------------------------- 124 (338)
T ss_pred ccccee--------------------------------------------------------------------------
Confidence 999872
Q ss_pred ecccccccccccchhhhhhcccccEEEEEecC---CeeEeeeCCCeEEEEeCCCCceEEeeeC-CceEEEEEecCCcEEE
Q psy18231 357 QIGDVTPISIHNSCFQALKEARDSITSVHVSD---HEILTASLDCRIRRYDIRTGNLVTDYVG-EPIVDACFTRDCQCIL 432 (540)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~i~~~~~sp~~~~l~ 432 (540)
.+..++|..-|.++.... .++.+++.|+++++||+++...++++.. .+++++.|..++..+.
T Consensus 125 --------------~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~kyqltAv~f~d~s~qv~ 190 (338)
T KOG0265|consen 125 --------------IRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFENKYQLTAVGFKDTSDQVI 190 (338)
T ss_pred --------------eehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccccceeEEEEEeccccccee
Confidence 336778888888887554 7788999999999999999999888865 6899999999999999
Q ss_pred eecCCCeEEEEeccccchhhhhccCcCCcceEEEEecCCCCeEEEeeCCCcEEEEEecCC----cceeEEEecccce--e
Q psy18231 433 TCSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDS----SQISTLIHSVGKA--V 506 (540)
Q Consensus 433 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~s~~~~~l~s~s~dg~i~iwd~~~~----~~~~~~~~~~~~~--~ 506 (540)
+|+-|+.|++||++....+.++.+|...|+.+ ..+++|.++.+-+.|.++++||++.. +++..+....|.- .
T Consensus 191 sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~l--sls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfekn 268 (338)
T KOG0265|consen 191 SGGIDNDIKVWDLRKNDGLYTLSGHADTITGL--SLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKN 268 (338)
T ss_pred eccccCceeeeccccCcceEEeecccCceeeE--EeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhh
Confidence 99999999999999999999999999999988 88999999999999999999998753 3466666323332 3
Q ss_pred eeEEEEcCCCcEEEeec-CCeeEEEEccc
Q psy18231 507 VNSLCSHPTRKHIMSAC-GNNVKLWTAEE 534 (540)
Q Consensus 507 v~~l~~s~d~~~l~s~~-d~~i~iw~~~~ 534 (540)
...++|||++..+.+++ |..+++||...
T Consensus 269 lL~cswsp~~~~i~ags~dr~vyvwd~~~ 297 (338)
T KOG0265|consen 269 LLKCSWSPNGTKITAGSADRFVYVWDTTS 297 (338)
T ss_pred cceeeccCCCCccccccccceEEEeeccc
Confidence 55678999999999999 99999999865
|
|
| >KOG1446|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-32 Score=231.30 Aligned_cols=281 Identities=19% Similarity=0.317 Sum_probs=235.2
Q ss_pred eecCeEEEEeCCCCCEEEEeeCCCcEEEEcCCCCeeEEEeecCCcceeEEEEeeCCCeEEEeeC--CCeEEEEEcCCCce
Q psy18231 163 VLSGLMHTRFPVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGAS--DKSVILWEVTTGQP 240 (540)
Q Consensus 163 h~~~v~~v~~spdg~~lat~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~--dg~i~iwd~~~~~~ 240 (540)
-.+.|+++.|+++|.+|++++.|.+++|||..+++.++++..++-.+..++|....+.++.++. |.+|+..++.+.+.
T Consensus 13 ~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~dNky 92 (311)
T KOG1446|consen 13 TNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHDNKY 92 (311)
T ss_pred CCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEEEEeecCce
Confidence 3578999999999999999999999999999999999999988889999999887777877777 88999999999999
Q ss_pred eEeccccCCceeEEEECCCCCEEEEecCCCcEEEEEecCCCCCCcchhhhhHhhhhcCCceeEEEEeecccccccccCce
Q psy18231 241 VRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHLSNGLL 320 (540)
Q Consensus 241 ~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (540)
++.+.+|...|..++.+|-+..+++++.|++|++||++..++.-..
T Consensus 93 lRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l---------------------------------- 138 (311)
T KOG1446|consen 93 LRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLL---------------------------------- 138 (311)
T ss_pred EEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEE----------------------------------
Confidence 9999999999999999998899999999999999999976631111
Q ss_pred eeEEEeeeecccccceeeeeeccceeEEEeecccceecccccccccccchhhhhhcccccEEEEEecC-C-eeEeeeCCC
Q psy18231 321 TKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEARDSITSVHVSD-H-EILTASLDC 398 (540)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~-~-~l~~~~~dg 398 (540)
+...-...+|+| . .+|++....
T Consensus 139 --------------------------------------------------------~~~~~pi~AfDp~GLifA~~~~~~ 162 (311)
T KOG1446|consen 139 --------------------------------------------------------NLSGRPIAAFDPEGLIFALANGSE 162 (311)
T ss_pred --------------------------------------------------------ecCCCcceeECCCCcEEEEecCCC
Confidence 111122457777 4 455555555
Q ss_pred eEEEEeCCCC--ceEEee--e---CCceEEEEEecCCcEEEeecCCCeEEEEeccccchhhhhccCcCCc-ceEEEEecC
Q psy18231 399 RIRRYDIRTG--NLVTDY--V---GEPIVDACFTRDCQCILTCSTDECLRLFDKATGELLEEYKGHKSGD-FRIECCLDS 470 (540)
Q Consensus 399 ~i~iwd~~~~--~~~~~~--~---~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v-~~~~~~~s~ 470 (540)
.|++||++.- .+-.++ . ....+.+.|||||++++.++..+.+++.|.-+|..+.++..+...- ..+..+|+|
T Consensus 163 ~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftP 242 (311)
T KOG1446|consen 163 LIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTP 242 (311)
T ss_pred eEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEECC
Confidence 9999999864 222222 2 2578999999999999999999999999999999998888876543 235668999
Q ss_pred CCCeEEEeeCCCcEEEEEecCCcceeEEEecccceeeeEEEEcCCCcEEEeecCCeeEEEEcccc
Q psy18231 471 KDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEED 535 (540)
Q Consensus 471 ~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~d~~i~iw~~~~~ 535 (540)
|++++++|+.||+|.+|++++++.+..+.. .+.+++.++.|.|.-.+++++ +..+.+|=....
T Consensus 243 ds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~-~~~~~~~~~~fnP~~~mf~sa-~s~l~fw~p~~~ 305 (311)
T KOG1446|consen 243 DSKFVLSGSDDGTIHVWNLETGKKVAVLRG-PNGGPVSCVRFNPRYAMFVSA-SSNLVFWLPDED 305 (311)
T ss_pred CCcEEEEecCCCcEEEEEcCCCcEeeEecC-CCCCCccccccCCceeeeeec-CceEEEEecccc
Confidence 999999999999999999999999999983 278999999999987777766 578888977643
|
|
| >KOG0274|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-33 Score=270.44 Aligned_cols=274 Identities=23% Similarity=0.415 Sum_probs=244.1
Q ss_pred eecCeEEEEeCCCCCEEEEeeCCCcEEEEcCCCCeeEEE-eecCCcceeEEEEeeCCCeEEEeeCCCeEEEEEcCCCcee
Q psy18231 163 VLSGLMHTRFPVDGSYCLTCGSDKKIKLWNPYRNLLLKT-YGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPV 241 (540)
Q Consensus 163 h~~~v~~v~~spdg~~lat~~~dg~i~iwd~~~~~~~~~-~~~h~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~ 241 (540)
|...+.+..|. +.++++++.+++|++||..++..+.. +.+|.+.|+++++..-+..|++|+.|.++++||..+|++.
T Consensus 207 ~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~ 284 (537)
T KOG0274|consen 207 DDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECT 284 (537)
T ss_pred Ccchhhhheee--cCeEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEE
Confidence 56778888888 45899999999999999999999888 9999999999999887889999999999999999999999
Q ss_pred EeccccCCceeEEEECCCCCEEEEecCCCcEEEEEecCCCCCCcchhhhhHhhhhcCCceeEEEEeecccccccccCcee
Q psy18231 242 RRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHLSNGLLT 321 (540)
Q Consensus 242 ~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (540)
..+.+|.+.|.++... +.++++|+.|.+|++|+++++.
T Consensus 285 ~~l~gh~stv~~~~~~--~~~~~sgs~D~tVkVW~v~n~~---------------------------------------- 322 (537)
T KOG0274|consen 285 HSLQGHTSSVRCLTID--PFLLVSGSRDNTVKVWDVTNGA---------------------------------------- 322 (537)
T ss_pred EEecCCCceEEEEEcc--CceEeeccCCceEEEEeccCcc----------------------------------------
Confidence 9999999999999885 4578889999999999999765
Q ss_pred eEEEeeeecccccceeeeeeccceeEEEeecccceecccccccccccchhhhhhcccccEEEEEecCCeeEeeeCCCeEE
Q psy18231 322 KLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEARDSITSVHVSDHEILTASLDCRIR 401 (540)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~dg~i~ 401 (540)
++..+.+|.++|.++..+..++++|+.|++|+
T Consensus 323 ------------------------------------------------~l~l~~~h~~~V~~v~~~~~~lvsgs~d~~v~ 354 (537)
T KOG0274|consen 323 ------------------------------------------------CLNLLRGHTGPVNCVQLDEPLLVSGSYDGTVK 354 (537)
T ss_pred ------------------------------------------------eEEEeccccccEEEEEecCCEEEEEecCceEE
Confidence 23356669999999999999999999999999
Q ss_pred EEeCCCCceEEeeeCC--ceEEEEEecCCcEEEeecCCCeEEEEecccc-chhhhhccCcCCcceEEEEecCCCCeEEEe
Q psy18231 402 RYDIRTGNLVTDYVGE--PIVDACFTRDCQCILTCSTDECLRLFDKATG-ELLEEYKGHKSGDFRIECCLDSKDSQIFCG 478 (540)
Q Consensus 402 iwd~~~~~~~~~~~~~--~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~v~~~~~~~s~~~~~l~s~ 478 (540)
+||+.+++++..+.+| .|+++.+.+. +.+++|+.|++|++||+++. +++.++.+|..-+..+ ...+++|+++
T Consensus 355 VW~~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l----~~~~~~Lvs~ 429 (537)
T KOG0274|consen 355 VWDPRTGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVSSL----LLRDNFLVSS 429 (537)
T ss_pred EEEhhhceeeeeecCCcceEEEEEecCc-ceEEeeeeccceEeecCCchhhhhhhhcCCccccccc----ccccceeEec
Confidence 9999999999999884 7888877665 89999999999999999999 9999999999877554 3567899999
Q ss_pred eCCCcEEEEEecCCcceeEEEecc-cceeeeEEEEcCCCcEEEeec-CCeeEEEEcccccC
Q psy18231 479 SSDGKIYKWQLVDSSQISTLIHSV-GKAVVNSLCSHPTRKHIMSAC-GNNVKLWTAEEDYG 537 (540)
Q Consensus 479 s~dg~i~iwd~~~~~~~~~~~~~~-~~~~v~~l~~s~d~~~l~s~~-d~~i~iw~~~~~~~ 537 (540)
+.|++|++||..+++++.++. + |.+.|..+++. ...+++++ |+++++||++++..
T Consensus 430 ~aD~~Ik~WD~~~~~~~~~~~--~~~~~~v~~l~~~--~~~il~s~~~~~~~l~dl~~~~~ 486 (537)
T KOG0274|consen 430 SADGTIKLWDAEEGECLRTLE--GRHVGGVSALALG--KEEILCSSDDGSVKLWDLRSGTL 486 (537)
T ss_pred cccccEEEeecccCceeeeec--cCCcccEEEeecC--cceEEEEecCCeeEEEecccCch
Confidence 999999999999999999998 5 67889999887 34566666 99999999987643
|
|
| >KOG0283|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-33 Score=268.49 Aligned_cols=238 Identities=26% Similarity=0.462 Sum_probs=206.0
Q ss_pred eeecCeEEEEeCCCCCEEEEeeCCCcEEEEcCCC--------------------------------C-------------
Q psy18231 162 FVLSGLMHTRFPVDGSYCLTCGSDKKIKLWNPYR--------------------------------N------------- 196 (540)
Q Consensus 162 ~h~~~v~~v~~spdg~~lat~~~dg~i~iwd~~~--------------------------------~------------- 196 (540)
.|.++|.++.||+||+|||+||.|+.|+||.+.. .
T Consensus 265 ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~ 344 (712)
T KOG0283|consen 265 AHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQ 344 (712)
T ss_pred ccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccC
Confidence 6999999999999999999999999999998654 0
Q ss_pred ---------------eeEEEeecCCcceeEEEEeeCCCeEEEeeCCCeEEEEEcCCCceeEeccccCCceeEEEECC-CC
Q psy18231 197 ---------------LLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNE-DS 260 (540)
Q Consensus 197 ---------------~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~-~~ 260 (540)
+++..+.||.+.|.+|.||. .++|+++|.|.+|++|++...+++..| .|.+.|+|++|+| |.
T Consensus 345 s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSK-n~fLLSSSMDKTVRLWh~~~~~CL~~F-~HndfVTcVaFnPvDD 422 (712)
T KOG0283|consen 345 SPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSK-NNFLLSSSMDKTVRLWHPGRKECLKVF-SHNDFVTCVAFNPVDD 422 (712)
T ss_pred CccccCCCccccccccchhhhhccchhheeccccc-CCeeEeccccccEEeecCCCcceeeEE-ecCCeeEEEEecccCC
Confidence 23355689999999999995 568999999999999999999999988 6999999999999 88
Q ss_pred CEEEEecCCCcEEEEEecCCCCCCcchhhhhHhhhhcCCceeEEEEeecccccccccCceeeEEEeeeecccccceeeee
Q psy18231 261 SVVISGSQDNTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVL 340 (540)
Q Consensus 261 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (540)
+++++|+-||.|+||++...+.
T Consensus 423 ryFiSGSLD~KvRiWsI~d~~V---------------------------------------------------------- 444 (712)
T KOG0283|consen 423 RYFISGSLDGKVRLWSISDKKV---------------------------------------------------------- 444 (712)
T ss_pred CcEeecccccceEEeecCcCee----------------------------------------------------------
Confidence 9999999999999999987651
Q ss_pred eccceeEEEeecccceecccccccccccchhhhhhcccccEEEEEecC--CeeEeeeCCCeEEEEeCCCCceEEeee---
Q psy18231 341 MSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEARDSITSVHVSD--HEILTASLDCRIRRYDIRTGNLVTDYV--- 415 (540)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~--- 415 (540)
. ....-..-|+++++.| +..++|+.+|.+++|+....+.....+
T Consensus 445 -------v------------------------~W~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~ 493 (712)
T KOG0283|consen 445 -------V------------------------DWNDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRL 493 (712)
T ss_pred -------E------------------------eehhhhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEee
Confidence 0 1122347889999999 889999999999999999887765543
Q ss_pred -------CCceEEEEEecCC-cEEEeecCCCeEEEEeccccchhhhhccCcCCcceEEEEecCCCCeEEEeeCCCcEEEE
Q psy18231 416 -------GEPIVDACFTRDC-QCILTCSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKW 487 (540)
Q Consensus 416 -------~~~i~~~~~sp~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~s~~~~~l~s~s~dg~i~iw 487 (540)
++.|+.+.|.|.. ..+++.+.|..|+|||.++.+++..|+++...-..+...|+.||++|+++++|..|++|
T Consensus 494 ~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW 573 (712)
T KOG0283|consen 494 HNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYIW 573 (712)
T ss_pred ccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeecCceEEEE
Confidence 2469999999843 45777889999999999999999999998776666777899999999999999999999
Q ss_pred Eec
Q psy18231 488 QLV 490 (540)
Q Consensus 488 d~~ 490 (540)
+..
T Consensus 574 ~~~ 576 (712)
T KOG0283|consen 574 KND 576 (712)
T ss_pred eCC
Confidence 973
|
|
| >KOG0310|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-33 Score=250.07 Aligned_cols=291 Identities=19% Similarity=0.281 Sum_probs=248.2
Q ss_pred ceeeeecccccceeeeeecCeEEEEeCCCCCE-EEEeeCCCcEEEEcCCCCeeEEEeecCCcceeEEEEeeCCCeEEEee
Q psy18231 147 WSIRVYRPLTVNRELFVLSGLMHTRFPVDGSY-CLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGA 225 (540)
Q Consensus 147 ~~i~~~~~~~~~~~~~h~~~v~~v~~spdg~~-lat~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s 225 (540)
..++.|+..+........++|++++|||...+ +|+.+ .-.+.||+..+....+++.-....|+++.|-.||++||+|.
T Consensus 9 ~e~~~w~~~~~~~~~ke~~~vssl~fsp~~P~d~aVt~-S~rvqly~~~~~~~~k~~srFk~~v~s~~fR~DG~LlaaGD 87 (487)
T KOG0310|consen 9 PEIRYWRQETFPPVHKEHNSVSSLCFSPKHPYDFAVTS-SVRVQLYSSVTRSVRKTFSRFKDVVYSVDFRSDGRLLAAGD 87 (487)
T ss_pred ccchhhhhhcccccccccCcceeEecCCCCCCceEEec-ccEEEEEecchhhhhhhHHhhccceeEEEeecCCeEEEccC
Confidence 34667777665555556689999999995543 55544 46899999999888888888899999999999999999999
Q ss_pred CCCeEEEEEcCCCceeEeccccCCceeEEEECCC-CCEEEEecCCCcEEEEEecCCCCCCcchhhhhHhhhhcCCceeEE
Q psy18231 226 SDKSVILWEVTTGQPVRRWREHASKVTCVKFNED-SSVVISGSQDNTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSV 304 (540)
Q Consensus 226 ~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (540)
..|.|+|+|..+...++.+.+|+.+|..+.|+|+ +..+++|+.|+.+++||+.+...
T Consensus 88 ~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v---------------------- 145 (487)
T KOG0310|consen 88 ESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYV---------------------- 145 (487)
T ss_pred CcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEE----------------------
Confidence 9999999998777788889999999999999994 56788899999999999987641
Q ss_pred EEeecccccccccCceeeEEEeeeecccccceeeeeeccceeEEEeecccceecccccccccccchhhhhhcccccEEEE
Q psy18231 305 HSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEARDSITSV 384 (540)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l 384 (540)
...+.+|.+.|.+.
T Consensus 146 ------------------------------------------------------------------~~~l~~htDYVR~g 159 (487)
T KOG0310|consen 146 ------------------------------------------------------------------QAELSGHTDYVRCG 159 (487)
T ss_pred ------------------------------------------------------------------EEEecCCcceeEee
Confidence 11567899999999
Q ss_pred EecC---CeeEeeeCCCeEEEEeCCCC-ceEEeee-CCceEEEEEecCCcEEEeecCCCeEEEEecccc-chhhhhccCc
Q psy18231 385 HVSD---HEILTASLDCRIRRYDIRTG-NLVTDYV-GEPIVDACFTRDCQCILTCSTDECLRLFDKATG-ELLEEYKGHK 458 (540)
Q Consensus 385 ~~~~---~~l~~~~~dg~i~iwd~~~~-~~~~~~~-~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~ 458 (540)
+++| .++++|+.||+|++||.++. ..+.++. +.+|-.+.+-|.|..+++++. +.|++||+.+| +.+..+..|.
T Consensus 160 ~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~elnhg~pVe~vl~lpsgs~iasAgG-n~vkVWDl~~G~qll~~~~~H~ 238 (487)
T KOG0310|consen 160 DISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELNHGCPVESVLALPSGSLIASAGG-NSVKVWDLTTGGQLLTSMFNHN 238 (487)
T ss_pred ccccCCCeEEEecCCCceEEEEEeccCCceeEEecCCCceeeEEEcCCCCEEEEcCC-CeEEEEEecCCceehhhhhccc
Confidence 9999 58999999999999999987 6667775 579999999999999998875 57999999854 6666666699
Q ss_pred CCcceEEEEecCCCCeEEEeeCCCcEEEEEecCCcceeEEEecccceeeeEEEEcCCCcEEEeec-CCeeEEEEc
Q psy18231 459 SGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC-GNNVKLWTA 532 (540)
Q Consensus 459 ~~v~~~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~-d~~i~iw~~ 532 (540)
..|+++ .+..++..|++|+-|+.|++||+.+.+.+..+. -.++|.+++.+|+++.++.|. ||.+.+=+.
T Consensus 239 KtVTcL--~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~---~~~pvLsiavs~dd~t~viGmsnGlv~~rr~ 308 (487)
T KOG0310|consen 239 KTVTCL--RLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWK---YPGPVLSIAVSPDDQTVVIGMSNGLVSIRRR 308 (487)
T ss_pred ceEEEE--EeecCCceEeecccccceEEEEccceEEEEeee---cccceeeEEecCCCceEEEecccceeeeehh
Confidence 999999 677789999999999999999999999998886 578899999999999999999 998776543
|
|
| >KOG0640|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-34 Score=238.79 Aligned_cols=286 Identities=21% Similarity=0.342 Sum_probs=238.6
Q ss_pred eeeecCeEEEEeCCCCCEEEEeeCCCcEEEEcCCCC------------------eeEEEeecCCcceeEEEEeeCCCeEE
Q psy18231 161 LFVLSGLMHTRFPVDGSYCLTCGSDKKIKLWNPYRN------------------LLLKTYGGHAHEVNDATAACDSSQIA 222 (540)
Q Consensus 161 ~~h~~~v~~v~~spdg~~lat~~~dg~i~iwd~~~~------------------~~~~~~~~h~~~v~~l~~sp~~~~l~ 222 (540)
..|.+++.+.+|||||.++|+|+.|..|+|.|++.. -.++++-.|..+|+++.|+|....|+
T Consensus 109 t~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~ILi 188 (430)
T KOG0640|consen 109 TSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRETILI 188 (430)
T ss_pred eecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhheEE
Confidence 469999999999999999999999999999997621 35678888999999999999999999
Q ss_pred EeeCCCeEEEEEcCCCceeEecc--ccCCceeEEEECCCCCEEEEecCCCcEEEEEecCCCCCCcchhhhhHhhhhcCCc
Q psy18231 223 SGASDKSVILWEVTTGQPVRRWR--EHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQVRCLNEALKEARDS 300 (540)
Q Consensus 223 s~s~dg~i~iwd~~~~~~~~~~~--~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 300 (540)
+++.|++|+++|.......+.++ ....+|.++.|+|.|.+|+.|....++++||+.+.+.....
T Consensus 189 S~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~Qcfvsa-------------- 254 (430)
T KOG0640|consen 189 SGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSA-------------- 254 (430)
T ss_pred eccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeec--------------
Confidence 99999999999997653332222 34678999999999999999999999999999987621000
Q ss_pred eeEEEEeecccccccccCceeeEEEeeeecccccceeeeeeccceeEEEeecccceecccccccccccchhhhhhccccc
Q psy18231 301 ITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEARDS 380 (540)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (540)
-.-..|.+.
T Consensus 255 -----------------------------------------------------------------------nPd~qht~a 263 (430)
T KOG0640|consen 255 -----------------------------------------------------------------------NPDDQHTGA 263 (430)
T ss_pred -----------------------------------------------------------------------Ccccccccc
Confidence 023468899
Q ss_pred EEEEEecC--CeeEeeeCCCeEEEEeCCCCceEEeeeC----CceEEEEEecCCcEEEeecCCCeEEEEeccccchhhhh
Q psy18231 381 ITSVHVSD--HEILTASLDCRIRRYDIRTGNLVTDYVG----EPIVDACFTRDCQCILTCSTDECLRLFDKATGELLEEY 454 (540)
Q Consensus 381 v~~l~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~----~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~ 454 (540)
|+++.+++ ++.++++.||.|++||--+++++.++.. ..|.++.|..+|+++++.+.|..+++|.+.+++++.++
T Consensus 264 i~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~Y 343 (430)
T KOG0640|consen 264 ITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRMLKEY 343 (430)
T ss_pred eeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCceEEEE
Confidence 99999998 8899999999999999999999888752 57999999999999999999999999999999999888
Q ss_pred ccCc---CCcceEEEEecCCCCeEEEee-CCCcEEEEEecCCcceeEEEecccceeeeEEEEcCCCcEEEeec-CCeeEE
Q psy18231 455 KGHK---SGDFRIECCLDSKDSQIFCGS-SDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC-GNNVKL 529 (540)
Q Consensus 455 ~~~~---~~v~~~~~~~s~~~~~l~s~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~-d~~i~i 529 (540)
.+.. .........|+....|++.-. ..+.+.-||.+++..+..+.. +|++.+..+.-||.+.-+.+++ |..+++
T Consensus 344 tGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~sl-gHn~a~R~i~HSP~~p~FmTcsdD~raRF 422 (430)
T KOG0640|consen 344 TGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSL-GHNGAVRWIVHSPVEPAFMTCSDDFRARF 422 (430)
T ss_pred ecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhccc-CCCCCceEEEeCCCCCceeeecccceeee
Confidence 7642 111112225777777766554 346799999999887766654 8999999999999999999999 999999
Q ss_pred EEc
Q psy18231 530 WTA 532 (540)
Q Consensus 530 w~~ 532 (540)
|--
T Consensus 423 Wyr 425 (430)
T KOG0640|consen 423 WYR 425 (430)
T ss_pred eee
Confidence 964
|
|
| >KOG0268|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-34 Score=244.75 Aligned_cols=279 Identities=18% Similarity=0.250 Sum_probs=237.4
Q ss_pred eeeeeecCeEEEEeCCCC-CEEEEeeCCCcEEEEcCCCCeeEEEeecCCcceeEEEEeeCCCeEEEeeCCCeEEEEEcCC
Q psy18231 159 RELFVLSGLMHTRFPVDG-SYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTT 237 (540)
Q Consensus 159 ~~~~h~~~v~~v~~spdg-~~lat~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~ 237 (540)
.+.+|.+.|.|++=+|.. ..+|+|+.||.|+|||+.+.+++.+++.|.+.|..|++.. ..+++++.|.+|+.|.++-
T Consensus 61 ~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~~~ 138 (433)
T KOG0268|consen 61 SLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWKIDG 138 (433)
T ss_pred hccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecc--cceEEecCCcceeeeeccC
Confidence 346899999999999976 7899999999999999999999999999999999999985 6799999999999999854
Q ss_pred CceeEeccccCCceeEEEECCCCCEEEEecCCCcEEEEEecCCCCCCcchhhhhHhhhhcCCceeEEEEeeccccccccc
Q psy18231 238 GQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHLSN 317 (540)
Q Consensus 238 ~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (540)
.++.++.+ .+.+..+.-+..++.++|+|+ .|.|||..... |
T Consensus 139 -~p~~tilg-~s~~~gIdh~~~~~~FaTcGe--~i~IWD~~R~~--P--------------------------------- 179 (433)
T KOG0268|consen 139 -PPLHTILG-KSVYLGIDHHRKNSVFATCGE--QIDIWDEQRDN--P--------------------------------- 179 (433)
T ss_pred -Ccceeeec-cccccccccccccccccccCc--eeeecccccCC--c---------------------------------
Confidence 46666543 566777877777788999886 59999987654 1
Q ss_pred CceeeEEEeeeecccccceeeeeeccceeEEEeecccceecccccccccccchhhhhhcccccEEEEEecC---CeeEee
Q psy18231 318 GLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEARDSITSVHVSD---HEILTA 394 (540)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~---~~l~~~ 394 (540)
++.+....+.|.++.|+| ..|+++
T Consensus 180 -----------------------------------------------------v~smswG~Dti~svkfNpvETsILas~ 206 (433)
T KOG0268|consen 180 -----------------------------------------------------VSSMSWGADSISSVKFNPVETSILASC 206 (433)
T ss_pred -----------------------------------------------------cceeecCCCceeEEecCCCcchheeee
Confidence 224455567899999999 788899
Q ss_pred eCCCeEEEEeCCCCceEEeee-CCceEEEEEecCCcEEEeecCCCeEEEEecccc-chhhhhccCcCCcceEEEEecCCC
Q psy18231 395 SLDCRIRRYDIRTGNLVTDYV-GEPIVDACFTRDCQCILTCSTDECLRLFDKATG-ELLEEYKGHKSGDFRIECCLDSKD 472 (540)
Q Consensus 395 ~~dg~i~iwd~~~~~~~~~~~-~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~v~~~~~~~s~~~ 472 (540)
+.|+.|.+||++++.+++.+. .-.-+.++|+|.+-.+++|++|..++.||++.. +++..+++|.+.|..+ .|||.|
T Consensus 207 ~sDrsIvLyD~R~~~Pl~KVi~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dV--dfsptG 284 (433)
T KOG0268|consen 207 ASDRSIVLYDLRQASPLKKVILTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDV--DFSPTG 284 (433)
T ss_pred ccCCceEEEecccCCccceeeeeccccceecCccccceeeccccccceehhhhhhcccchhhcccceeEEEe--ccCCCc
Confidence 999999999999999887775 356788999998888999999999999999875 5788899999998877 899999
Q ss_pred CeEEEeeCCCcEEEEEecCCcceeEEEecccceeeeEEEEcCCCcEEEeec-CCeeEEEEccc
Q psy18231 473 SQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC-GNNVKLWTAEE 534 (540)
Q Consensus 473 ~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~-d~~i~iw~~~~ 534 (540)
+-+++||.|.+|+||.+..+........ .....|.++.||.|.+++++|+ |+.|++|....
T Consensus 285 ~EfvsgsyDksIRIf~~~~~~SRdiYht-kRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~A 346 (433)
T KOG0268|consen 285 QEFVSGSYDKSIRIFPVNHGHSRDIYHT-KRMQHVFCVKYSMDSKYIISGSDDGNVRLWKAKA 346 (433)
T ss_pred chhccccccceEEEeecCCCcchhhhhH-hhhheeeEEEEeccccEEEecCCCcceeeeecch
Confidence 9999999999999999987765444321 2345699999999999999999 99999998753
|
|
| >KOG0275|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-34 Score=241.09 Aligned_cols=271 Identities=20% Similarity=0.278 Sum_probs=236.6
Q ss_pred Ccceeccccchhhhhhcccccceeeeecccccce-----------eeeeecCeEEEEeCCCCCEEEEeeCCCcEEEEcCC
Q psy18231 126 HPLLFSLPRTITRILYELPKEWSIRVYRPLTVNR-----------ELFVLSGLMHTRFPVDGSYCLTCGSDKKIKLWNPY 194 (540)
Q Consensus 126 ~~~~~s~~~~~~~~~~~~~~~~~i~~~~~~~~~~-----------~~~h~~~v~~v~~spdg~~lat~~~dg~i~iwd~~ 194 (540)
....|||+ ...+.+++.|+.|.+|+..++.. ...+.++|.|+.||.|...||+|+.||.|++|.+.
T Consensus 217 EcA~FSPD---gqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~ 293 (508)
T KOG0275|consen 217 ECARFSPD---GQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIE 293 (508)
T ss_pred hheeeCCC---CceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEEEEe
Confidence 45677777 56788999999999999887542 24488999999999999999999999999999999
Q ss_pred CCeeEEEee-cCCcceeEEEEeeCCCeEEEeeCCCeEEEEEcCCCceeEeccccCCceeEEEECCCCCEEEEecCCCcEE
Q psy18231 195 RNLLLKTYG-GHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVM 273 (540)
Q Consensus 195 ~~~~~~~~~-~h~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~ 273 (540)
+|.+++.|. .|+..|+|+.||.|+..+++++.|.+++|.-+.+|+++..+++|.+.|+...|.+||.++++++.||+|+
T Consensus 294 tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iisaSsDgtvk 373 (508)
T KOG0275|consen 294 TGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHIISASSDGTVK 373 (508)
T ss_pred cchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCccccccceEEcCCCCeEEEecCCccEE
Confidence 999999996 8999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCCCCCcchhhhhHhhhhcCCceeEEEEeecccccccccCceeeEEEeeeecccccceeeeeeccceeEEEeecc
Q psy18231 274 MWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFL 353 (540)
Q Consensus 274 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (540)
+|+..+.++....
T Consensus 374 vW~~KtteC~~Tf------------------------------------------------------------------- 386 (508)
T KOG0275|consen 374 VWHGKTTECLSTF------------------------------------------------------------------- 386 (508)
T ss_pred EecCcchhhhhhc-------------------------------------------------------------------
Confidence 9999887631111
Q ss_pred cceecccccccccccchhhhhhcccccEEEEEecC---CeeEeeeCCCeEEEEeCCCCceEEeeeC-----CceEEEEEe
Q psy18231 354 GSTQIGDVTPISIHNSCFQALKEARDSITSVHVSD---HEILTASLDCRIRRYDIRTGNLVTDYVG-----EPIVDACFT 425 (540)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~~-----~~i~~~~~s 425 (540)
...+...+|.++..-| ..++++...+++.+-++. |+.++.+.. +...+.++|
T Consensus 387 -------------------k~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~q-GQvVrsfsSGkREgGdFi~~~lS 446 (508)
T KOG0275|consen 387 -------------------KPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQ-GQVVRSFSSGKREGGDFINAILS 446 (508)
T ss_pred -------------------cCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEecc-ceEEeeeccCCccCCceEEEEec
Confidence 0112234555555544 778999999999999986 777877753 467788899
Q ss_pred cCCcEEEeecCCCeEEEEeccccchhhhhccCcCCcceEEEEecCCCCeEEEeeCCCcEEEEE
Q psy18231 426 RDCQCILTCSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQ 488 (540)
Q Consensus 426 p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~s~~~~~l~s~s~dg~i~iwd 488 (540)
|.|.++.+.++|+.++.|...+|+..+++..|...+..+ +.+|..+.||+-++||.+++|.
T Consensus 447 pkGewiYcigED~vlYCF~~~sG~LE~tl~VhEkdvIGl--~HHPHqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 447 PKGEWIYCIGEDGVLYCFSVLSGKLERTLPVHEKDVIGL--THHPHQNLLASYSEDGLLKLWK 507 (508)
T ss_pred CCCcEEEEEccCcEEEEEEeecCceeeeeeccccccccc--ccCcccchhhhhcccchhhhcC
Confidence 999999999999999999999999999999999888777 8999999999999999999995
|
|
| >KOG0316|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-32 Score=221.82 Aligned_cols=242 Identities=18% Similarity=0.285 Sum_probs=216.2
Q ss_pred eEEEeecCCcceeEEEEeeCCCeEEEeeCCCeEEEEEcCCCceeEeccccCCceeEEEECCCCCEEEEecCCCcEEEEEe
Q psy18231 198 LLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDV 277 (540)
Q Consensus 198 ~~~~~~~h~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~ 277 (540)
.+..+..|.++|..+.|+-||+|.++++.|.+|++|+...|.+++++.+|...|..++.+.|...+++++.|+.+.+||+
T Consensus 9 r~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV 88 (307)
T KOG0316|consen 9 RLSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDV 88 (307)
T ss_pred hceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEEc
Confidence 45667889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCcchhhhhHhhhhcCCceeEEEEeecccccccccCceeeEEEeeeecccccceeeeeeccceeEEEeeccccee
Q psy18231 278 KSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQ 357 (540)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (540)
.+++.
T Consensus 89 ~TGkv--------------------------------------------------------------------------- 93 (307)
T KOG0316|consen 89 NTGKV--------------------------------------------------------------------------- 93 (307)
T ss_pred ccCee---------------------------------------------------------------------------
Confidence 99872
Q ss_pred cccccccccccchhhhhhcccccEEEEEecC--CeeEeeeCCCeEEEEeCCCC--ceEEeeeC--CceEEEEEecCCcEE
Q psy18231 358 IGDVTPISIHNSCFQALKEARDSITSVHVSD--HEILTASLDCRIRRYDIRTG--NLVTDYVG--EPIVDACFTRDCQCI 431 (540)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~--~~l~~~~~dg~i~iwd~~~~--~~~~~~~~--~~i~~~~~sp~~~~l 431 (540)
.+.+.+|.+.|+.+.|+. ..+++|+.|.++++||-++. ++++.+.. ..|.++.. .+..+
T Consensus 94 -------------~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v--~~heI 158 (307)
T KOG0316|consen 94 -------------DRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDV--AEHEI 158 (307)
T ss_pred -------------eeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEe--cccEE
Confidence 347889999999999998 88999999999999999865 56776654 57888777 46789
Q ss_pred EeecCCCeEEEEeccccchhhhhccCcCCcceEEEEecCCCCeEEEeeCCCcEEEEEecCCcceeEEEeccccee--eeE
Q psy18231 432 LTCSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAV--VNS 509 (540)
Q Consensus 432 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~--v~~ 509 (540)
++|+.||+++.||++.|+....+-+| +|+++ +|++|++....++.|+++++.|-.+|+.++..+ +|... =..
T Consensus 159 vaGS~DGtvRtydiR~G~l~sDy~g~--pit~v--s~s~d~nc~La~~l~stlrLlDk~tGklL~sYk--Ghkn~eykld 232 (307)
T KOG0316|consen 159 VAGSVDGTVRTYDIRKGTLSSDYFGH--PITSV--SFSKDGNCSLASSLDSTLRLLDKETGKLLKSYK--GHKNMEYKLD 232 (307)
T ss_pred EeeccCCcEEEEEeecceeehhhcCC--cceeE--EecCCCCEEEEeeccceeeecccchhHHHHHhc--ccccceeeee
Confidence 99999999999999999988777666 57888 899999999999999999999999999999999 77654 445
Q ss_pred EEEcCCCcEEEeec-CCeeEEEEcccc
Q psy18231 510 LCSHPTRKHIMSAC-GNNVKLWTAEED 535 (540)
Q Consensus 510 l~~s~d~~~l~s~~-d~~i~iw~~~~~ 535 (540)
++++.....+++|+ ||.|.+||+.++
T Consensus 233 c~l~qsdthV~sgSEDG~Vy~wdLvd~ 259 (307)
T KOG0316|consen 233 CCLNQSDTHVFSGSEDGKVYFWDLVDE 259 (307)
T ss_pred eeecccceeEEeccCCceEEEEEeccc
Confidence 67777888999999 999999999765
|
|
| >KOG0973|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-32 Score=268.09 Aligned_cols=282 Identities=19% Similarity=0.270 Sum_probs=240.8
Q ss_pred eecCeEEEEeCCCCCEEEEee--CCCcEEEEcCCC------------CeeEEEeecCCcceeEEEEeeCCCeEEEeeCCC
Q psy18231 163 VLSGLMHTRFPVDGSYCLTCG--SDKKIKLWNPYR------------NLLLKTYGGHAHEVNDATAACDSSQIASGASDK 228 (540)
Q Consensus 163 h~~~v~~v~~spdg~~lat~~--~dg~i~iwd~~~------------~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~dg 228 (540)
++..|.++..+|||..+|||+ .||.++||+.+. .+.+.+...|.+.|+|+.|+|||++||+||.|+
T Consensus 12 ~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~ 91 (942)
T KOG0973|consen 12 NEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDDR 91 (942)
T ss_pred CCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCcc
Confidence 445699999999999999999 899999998542 234566778999999999999999999999999
Q ss_pred eEEEEEcCC------------------CceeEeccccCCceeEEEECCCCCEEEEecCCCcEEEEEecCCCCCCcchhhh
Q psy18231 229 SVILWEVTT------------------GQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQVRCL 290 (540)
Q Consensus 229 ~i~iwd~~~------------------~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~ 290 (540)
.|.||+... .+.+..+.+|.+.|..++|+|++.+|++++.|++|.+||..+.+
T Consensus 92 ~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~--------- 162 (942)
T KOG0973|consen 92 LVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFE--------- 162 (942)
T ss_pred eEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccccce---------
Confidence 999999872 13566788999999999999999999999999999999988774
Q ss_pred hHhhhhcCCceeEEEEeecccccccccCceeeEEEeeeecccccceeeeeeccceeEEEeecccceecccccccccccch
Q psy18231 291 NEALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSC 370 (540)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (540)
.
T Consensus 163 -------------------------------------------------------------------------------~ 163 (942)
T KOG0973|consen 163 -------------------------------------------------------------------------------L 163 (942)
T ss_pred -------------------------------------------------------------------------------e
Confidence 2
Q ss_pred hhhhhcccccEEEEEecC--CeeEeeeCCCeEEEEeCCCCceEEeeeC--------CceEEEEEecCCcEEEeecC----
Q psy18231 371 FQALKEARDSITSVHVSD--HEILTASLDCRIRRYDIRTGNLVTDYVG--------EPIVDACFTRDCQCILTCST---- 436 (540)
Q Consensus 371 ~~~~~~~~~~v~~l~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~--------~~i~~~~~sp~~~~l~~~~~---- 436 (540)
+..+.+|.+.|..+.|+| +++++-+.|++|++|++.+....+.+.. ..+..+.|||||++|++...
T Consensus 164 ~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~ 243 (942)
T KOG0973|consen 164 LKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGG 243 (942)
T ss_pred eeeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCC
Confidence 337889999999999999 9999999999999999887767666653 35889999999999998653
Q ss_pred CCeEEEEeccccchhhhhccCcCCcceEEEEecCC-----CC------------eEEEeeCCCcEEEEEecCCcceeEEE
Q psy18231 437 DECLRLFDKATGELLEEYKGHKSGDFRIECCLDSK-----DS------------QIFCGSSDGKIYKWQLVDSSQISTLI 499 (540)
Q Consensus 437 dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~s~~-----~~------------~l~s~s~dg~i~iwd~~~~~~~~~~~ 499 (540)
-.++.|.+-.+.+.-..|-+|..++.++ .|+|. .+ .+|+||.|++|-||.....+++....
T Consensus 244 ~~~~~IieR~tWk~~~~LvGH~~p~evv--rFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~ 321 (942)
T KOG0973|consen 244 KSTIAIIERGTWKVDKDLVGHSAPVEVV--RFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIH 321 (942)
T ss_pred cceeEEEecCCceeeeeeecCCCceEEE--EeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchhhhh
Confidence 3468899888888888999999999888 56541 11 58899999999999988888876664
Q ss_pred ecccceeeeEEEEcCCCcEEEeec-CCeeEEEEcccc
Q psy18231 500 HSVGKAVVNSLCSHPTRKHIMSAC-GNNVKLWTAEED 535 (540)
Q Consensus 500 ~~~~~~~v~~l~~s~d~~~l~s~~-d~~i~iw~~~~~ 535 (540)
. -....|.+++|+|||..|++++ ||+|.+..++++
T Consensus 322 ~-lf~~SI~DmsWspdG~~LfacS~DGtV~~i~Fee~ 357 (942)
T KOG0973|consen 322 N-LFNKSIVDMSWSPDGFSLFACSLDGTVALIHFEEK 357 (942)
T ss_pred h-hhcCceeeeeEcCCCCeEEEEecCCeEEEEEcchH
Confidence 3 4567899999999999999999 999999998754
|
|
| >KOG0277|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-32 Score=224.73 Aligned_cols=273 Identities=17% Similarity=0.247 Sum_probs=221.0
Q ss_pred EEEEeCC-CCCEEEEe-------eCCCcEEEEcCCCCeeEEEee--cCCcceeEEEEeeC-CCeEEEeeCCCeEEEEEcC
Q psy18231 168 MHTRFPV-DGSYCLTC-------GSDKKIKLWNPYRNLLLKTYG--GHAHEVNDATAACD-SSQIASGASDKSVILWEVT 236 (540)
Q Consensus 168 ~~v~~sp-dg~~lat~-------~~dg~i~iwd~~~~~~~~~~~--~h~~~v~~l~~sp~-~~~l~s~s~dg~i~iwd~~ 236 (540)
.++.||| -.++||++ ...|.+.|-++...+-+..+. .-.+.+..++|+++ .+.+++++.||++++||+.
T Consensus 12 ysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~ 91 (311)
T KOG0277|consen 12 YSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDLT 91 (311)
T ss_pred ceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEEEEeeecccceeEeeecCCCcceEEEEecCceEEEeccC
Confidence 5788999 22344432 226899999986444343332 24678999999994 5678899999999999975
Q ss_pred C-CceeEeccccCCceeEEEECC-CCCEEEEecCCCcEEEEEecCCCCCCcchhhhhHhhhhcCCceeEEEEeecccccc
Q psy18231 237 T-GQPVRRWREHASKVTCVKFNE-DSSVVISGSQDNTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNH 314 (540)
Q Consensus 237 ~-~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (540)
. ..+++.+++|..+|.++.|++ ++..++++|.|++|++|+....+
T Consensus 92 ~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~--------------------------------- 138 (311)
T KOG0277|consen 92 MPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPN--------------------------------- 138 (311)
T ss_pred CCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCc---------------------------------
Confidence 4 368889999999999999999 66778888999999999987655
Q ss_pred cccCceeeEEEeeeecccccceeeeeeccceeEEEeecccceecccccccccccchhhhhhcccccEEEEEecC---Cee
Q psy18231 315 LSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEARDSITSVHVSD---HEI 391 (540)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~---~~l 391 (540)
.++++.+|...|...+|+| +.+
T Consensus 139 -------------------------------------------------------Sv~Tf~gh~~~Iy~a~~sp~~~nlf 163 (311)
T KOG0277|consen 139 -------------------------------------------------------SVQTFNGHNSCIYQAAFSPHIPNLF 163 (311)
T ss_pred -------------------------------------------------------ceEeecCCccEEEEEecCCCCCCeE
Confidence 1336788999999999998 899
Q ss_pred EeeeCCCeEEEEeCCCCceEEeee--CCceEEEEEec-CCcEEEeecCCCeEEEEecccc-chhhhhccCcCCcceEEEE
Q psy18231 392 LTASLDCRIRRYDIRTGNLVTDYV--GEPIVDACFTR-DCQCILTCSTDECLRLFDKATG-ELLEEYKGHKSGDFRIECC 467 (540)
Q Consensus 392 ~~~~~dg~i~iwd~~~~~~~~~~~--~~~i~~~~~sp-~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~v~~~~~~ 467 (540)
++++.|+.+++||++.......+. ...|.++.|+. +.+.|++|+.|+.|++||+++. .++.++.+|.-.|..+ .
T Consensus 164 as~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkv--k 241 (311)
T KOG0277|consen 164 ASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKV--K 241 (311)
T ss_pred EEccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCCCceEEEEehhhccccceeecCCceEEEEE--e
Confidence 999999999999998654433344 35799999998 7788999999999999999875 5678889999888888 7
Q ss_pred ecCCC-CeEEEeeCCCcEEEEEecCC-cceeEEEecccceeeeEEEEcC-CCcEEEeec-CCeeEEEEc
Q psy18231 468 LDSKD-SQIFCGSSDGKIYKWQLVDS-SQISTLIHSVGKAVVNSLCSHP-TRKHIMSAC-GNNVKLWTA 532 (540)
Q Consensus 468 ~s~~~-~~l~s~s~dg~i~iwd~~~~-~~~~~~~~~~~~~~v~~l~~s~-d~~~l~s~~-d~~i~iw~~ 532 (540)
|||.. ..||+++.|-+++|||...+ ..+.+.. .|..-|..+.||+ +..++|+.+ |+.++||+.
T Consensus 242 ~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~--~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 242 FSPHHASLLASASYDMTVRIWDPERQDSAIETVD--HHTEFVCGLDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred cCcchhhHhhhccccceEEecccccchhhhhhhh--ccceEEeccccccccCceeeecccccceeeecc
Confidence 88764 46999999999999998744 4555666 7999999999997 467899999 999999985
|
|
| >KOG0293|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-33 Score=241.14 Aligned_cols=269 Identities=23% Similarity=0.379 Sum_probs=226.1
Q ss_pred ceeccccchhhhhhcccccceeeeecccccc------eeeeeecCeEEEEeCCCCCEEEEeeCCCcEEEEcCCCCeeEEE
Q psy18231 128 LLFSLPRTITRILYELPKEWSIRVYRPLTVN------RELFVLSGLMHTRFPVDGSYCLTCGSDKKIKLWNPYRNLLLKT 201 (540)
Q Consensus 128 ~~~s~~~~~~~~~~~~~~~~~i~~~~~~~~~------~~~~h~~~v~~v~~spdg~~lat~~~dg~i~iwd~~~~~~~~~ 201 (540)
+.||.+ ..++++.++|.+.-+|...... ...+|..+|..+.||||.++|++++.|..+.+||+.+|.....
T Consensus 230 l~FS~n---GkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~ 306 (519)
T KOG0293|consen 230 LQFSHN---GKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHL 306 (519)
T ss_pred EEEcCC---CeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHheeeccCCcchhhhh
Confidence 355665 4677888999999999876543 3567999999999999999999999999999999999998887
Q ss_pred ee-cCCcceeEEEEeeCCCeEEEeeCCCeEEEEEcCCCceeEecccc-CCceeEEEECCCCCEEEEecCCCcEEEEEecC
Q psy18231 202 YG-GHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPVRRWREH-ASKVTCVKFNEDSSVVISGSQDNTVMMWDVKS 279 (540)
Q Consensus 202 ~~-~h~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h-~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 279 (540)
+. +|...+.+++|.|||..+++|+.|++|..||+ +|..+...++- ...|.+++.++||+++++.+.|..|++++.++
T Consensus 307 y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdl-Dgn~~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~ 385 (519)
T KOG0293|consen 307 YPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDL-DGNILGNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREA 385 (519)
T ss_pred cccCcCCCcceeEEccCCceeEecCCCCcEEEecC-CcchhhcccccccceeEEEEEcCCCcEEEEEecccceeeechhh
Confidence 74 35688999999999999999999999999998 45555555543 35699999999999999999999999999876
Q ss_pred CCCCCcchhhhhHhhhhcCCceeEEEEeecccccccccCceeeEEEeeeecccccceeeeeeccceeEEEeecccceecc
Q psy18231 280 RSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIG 359 (540)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (540)
....
T Consensus 386 ~~dr---------------------------------------------------------------------------- 389 (519)
T KOG0293|consen 386 RVDR---------------------------------------------------------------------------- 389 (519)
T ss_pred hhhh----------------------------------------------------------------------------
Confidence 5420
Q ss_pred cccccccccchhhhhhcccccEEEEEecC--CeeEeeeCCCeEEEEeCCCCceEEeeeCC----ceEEEEEec-CCcEEE
Q psy18231 360 DVTPISIHNSCFQALKEARDSITSVHVSD--HEILTASLDCRIRRYDIRTGNLVTDYVGE----PIVDACFTR-DCQCIL 432 (540)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~v~~l~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~----~i~~~~~sp-~~~~l~ 432 (540)
.+.....+|++++.+. +++++.-.+..+++||++..+.++.+.|+ .+..-+|.- +..+++
T Consensus 390 -------------~lise~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fia 456 (519)
T KOG0293|consen 390 -------------GLISEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIA 456 (519)
T ss_pred -------------ccccccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcceEE
Confidence 1223456788888887 77788888999999999988888888764 455666754 558999
Q ss_pred eecCCCeEEEEeccccchhhhhccCcCCcceEEEEecCCCC-eEEEeeCCCcEEEEEecC
Q psy18231 433 TCSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDS-QIFCGSSDGKIYKWQLVD 491 (540)
Q Consensus 433 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~s~~~~-~l~s~s~dg~i~iwd~~~ 491 (540)
+|++|+.|+||+..+++++.++.+|...+.++ +|+|... ++|+||.||+|+||....
T Consensus 457 SGSED~kvyIWhr~sgkll~~LsGHs~~vNcV--swNP~~p~m~ASasDDgtIRIWg~~~ 514 (519)
T KOG0293|consen 457 SGSEDSKVYIWHRISGKLLAVLSGHSKTVNCV--SWNPADPEMFASASDDGTIRIWGPSD 514 (519)
T ss_pred ecCCCceEEEEEccCCceeEeecCCcceeeEE--ecCCCCHHHhhccCCCCeEEEecCCc
Confidence 99999999999999999999999999999998 8998765 599999999999998653
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-31 Score=279.37 Aligned_cols=269 Identities=18% Similarity=0.289 Sum_probs=219.8
Q ss_pred ceeccccchhhhhhcccccceeeeeccccc----------ceeeeeecCeEEEEeCC-CCCEEEEeeCCCcEEEEcCCCC
Q psy18231 128 LLFSLPRTITRILYELPKEWSIRVYRPLTV----------NRELFVLSGLMHTRFPV-DGSYCLTCGSDKKIKLWNPYRN 196 (540)
Q Consensus 128 ~~~s~~~~~~~~~~~~~~~~~i~~~~~~~~----------~~~~~h~~~v~~v~~sp-dg~~lat~~~dg~i~iwd~~~~ 196 (540)
+.|+++ ..++++++.+++|++|+.... .....+...|.+++|+| ++.+||+++.||+|++||+.++
T Consensus 489 i~fs~d---g~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~ 565 (793)
T PLN00181 489 IGFDRD---GEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELASRSKLSGICWNSYIKSQVASSNFEGVVQVWDVARS 565 (793)
T ss_pred EEECCC---CCEEEEEeCCCEEEEEECCcccccccccccceEEecccCceeeEEeccCCCCEEEEEeCCCeEEEEECCCC
Confidence 445544 345678899999999986431 11233557899999987 5789999999999999999999
Q ss_pred eeEEEeecCCcceeEEEEee-CCCeEEEeeCCCeEEEEEcCCCceeEeccccCCceeEEEEC-CCCCEEEEecCCCcEEE
Q psy18231 197 LLLKTYGGHAHEVNDATAAC-DSSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFN-EDSSVVISGSQDNTVMM 274 (540)
Q Consensus 197 ~~~~~~~~h~~~v~~l~~sp-~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~-~~~~~l~s~~~dg~i~i 274 (540)
+.+..+.+|.+.|++++|+| ++.+|++|+.|++|++||+.++..+..+..+ ..|.++.|+ +++.+|++|+.||.|++
T Consensus 566 ~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~-~~v~~v~~~~~~g~~latgs~dg~I~i 644 (793)
T PLN00181 566 QLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTK-ANICCVQFPSESGRSLAFGSADHKVYY 644 (793)
T ss_pred eEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecC-CCeEEEEEeCCCCCEEEEEeCCCeEEE
Confidence 99999999999999999997 7899999999999999999999988888654 679999995 47899999999999999
Q ss_pred EEecCCCCCCcchhhhhHhhhhcCCceeEEEEeecccccccccCceeeEEEeeeecccccceeeeeeccceeEEEeeccc
Q psy18231 275 WDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLG 354 (540)
Q Consensus 275 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (540)
||++..+. +
T Consensus 645 wD~~~~~~-~---------------------------------------------------------------------- 653 (793)
T PLN00181 645 YDLRNPKL-P---------------------------------------------------------------------- 653 (793)
T ss_pred EECCCCCc-c----------------------------------------------------------------------
Confidence 99976541 0
Q ss_pred ceecccccccccccchhhhhhcccccEEEEEecC-CeeEeeeCCCeEEEEeCCCC------ceEEeeeC--CceEEEEEe
Q psy18231 355 STQIGDVTPISIHNSCFQALKEARDSITSVHVSD-HEILTASLDCRIRRYDIRTG------NLVTDYVG--EPIVDACFT 425 (540)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~-~~l~~~~~dg~i~iwd~~~~------~~~~~~~~--~~i~~~~~s 425 (540)
...+.+|...|.++.|.+ ..+++++.|++|++||++.+ +.+..+.+ ..+.+++|+
T Consensus 654 ----------------~~~~~~h~~~V~~v~f~~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s 717 (793)
T PLN00181 654 ----------------LCTMIGHSKTVSYVRFVDSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLS 717 (793)
T ss_pred ----------------ceEecCCCCCEEEEEEeCCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEc
Confidence 113457888999999977 88999999999999999753 45666665 468899999
Q ss_pred cCCcEEEeecCCCeEEEEeccccchhhhh-------------ccCcCCcceEEEEecCCCCeEEEeeCCCcEEEEEe
Q psy18231 426 RDCQCILTCSTDECLRLFDKATGELLEEY-------------KGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQL 489 (540)
Q Consensus 426 p~~~~l~~~~~dg~i~i~d~~~~~~~~~~-------------~~~~~~v~~~~~~~s~~~~~l~s~s~dg~i~iwd~ 489 (540)
|++++|++|+.|+.|++|+......+..+ ..|...|..+ +|++++..|++|+.||.|+||++
T Consensus 718 ~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v--~ws~~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 718 VSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSV--CWRGQSSTLVAANSTGNIKILEM 792 (793)
T ss_pred CCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEE--EEcCCCCeEEEecCCCcEEEEec
Confidence 99999999999999999997655433211 2233445555 89999999999999999999996
|
|
| >KOG1539|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-30 Score=245.44 Aligned_cols=401 Identities=15% Similarity=0.205 Sum_probs=291.6
Q ss_pred cceeccccchhhhhhcccccceeeeeccccccee---eeeecCeEEEEeCCCCCEEEEeeCCCcEEEEcCCCCeeEEEee
Q psy18231 127 PLLFSLPRTITRILYELPKEWSIRVYRPLTVNRE---LFVLSGLMHTRFPVDGSYCLTCGSDKKIKLWNPYRNLLLKTYG 203 (540)
Q Consensus 127 ~~~~s~~~~~~~~~~~~~~~~~i~~~~~~~~~~~---~~h~~~v~~v~~spdg~~lat~~~dg~i~iwd~~~~~~~~~~~ 203 (540)
+...-.+......+.-++..+.+.+|+..+.... ..+...|+++.=+|--..+|.|..+|+|.++|++.++.+.+++
T Consensus 162 Ital~HP~TYLNKIvvGs~~G~lql~Nvrt~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~sFk 241 (910)
T KOG1539|consen 162 ITALLHPSTYLNKIVVGSSQGRLQLWNVRTGKVVYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKILMSFK 241 (910)
T ss_pred eeeEecchhheeeEEEeecCCcEEEEEeccCcEEEEecccccceeEeccCCcceEEEEeccCceEEEEEcccCcEEEEEE
Confidence 4444445555555566788999999999987643 3467899999999988899999999999999999999999999
Q ss_pred cCCcceeEEEEeeCCCe-EEEeeCCCeEEEEEcCCCceeEecc-ccCCceeEEEECCCCCEEEEecCCCcEEEEEecCCC
Q psy18231 204 GHAHEVNDATAACDSSQ-IASGASDKSVILWEVTTGQPVRRWR-EHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRS 281 (540)
Q Consensus 204 ~h~~~v~~l~~sp~~~~-l~s~s~dg~i~iwd~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~ 281 (540)
...+.|++++|.-||+. +|+|+..|.+.+||++..+.+..++ .|.+.|....|.|....+++++.|+.+++|=.+++.
T Consensus 242 ~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~d 321 (910)
T KOG1539|consen 242 QDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGD 321 (910)
T ss_pred ccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccCCCceeEEEeeCCC
Confidence 55699999999999876 5667777999999999988877766 899999999999999999999999999998666433
Q ss_pred CCCcchhhhhHhhhhcCCceeE----------------------------------------------------------
Q psy18231 282 HHPIQVRCLNEALKEARDSITS---------------------------------------------------------- 303 (540)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~---------------------------------------------------------- 303 (540)
-.+...+. ..++..+..+
T Consensus 322 g~pR~LR~----R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~ 397 (910)
T KOG1539|consen 322 GVPRLLRS----RGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPP 397 (910)
T ss_pred Ccchheee----ccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCc
Confidence 21111000 0000000000
Q ss_pred EEEeecccc------cccccCceeeEEEeeeeccc---------------ccceeeeeecc-ceeEEEeecccceecccc
Q psy18231 304 VHSLVKSTK------NHLSNGLLTKLVFAFRCKYL---------------NGLLSGVLMST-QHLMVLLDFLGSTQIGDV 361 (540)
Q Consensus 304 ~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 361 (540)
+..+.+... +.+...........|+.+.. .....++..+. ++...+....|.....++
T Consensus 398 i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNm 477 (910)
T KOG1539|consen 398 IVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNM 477 (910)
T ss_pred ceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEc
Confidence 000000000 00000001111112211110 11112222222 222333333343333333
Q ss_pred cccccccchhhhhhcccccEEEEEecC--CeeEeeeCCCeEEEEeCCCCceEEeee-CCceEEEEEecCCcEEEeecCCC
Q psy18231 362 TPISIHNSCFQALKEARDSITSVHVSD--HEILTASLDCRIRRYDIRTGNLVTDYV-GEPIVDACFTRDCQCILTCSTDE 438 (540)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~v~~l~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~i~~~~~sp~~~~l~~~~~dg 438 (540)
...-.... ...-..|..+|++++.+. +.+++++.+|.+.+||..+..++..+. +..+.++..+.....++++..|-
T Consensus 478 QSGi~r~s-f~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf 556 (910)
T KOG1539|consen 478 QSGIHRKS-FGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDF 556 (910)
T ss_pred ccCeeecc-cccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCce
Confidence 22111111 112357999999999998 779999999999999999998888776 57899999999999999999999
Q ss_pred eEEEEeccccchhhhhccCcCCcceEEEEecCCCCeEEEeeCCCcEEEEEecCCcceeEEEecccceeeeEEEEcCCCcE
Q psy18231 439 CLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKH 518 (540)
Q Consensus 439 ~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~ 518 (540)
.|+++|..+.+.++.|.+|.+.++.+ +|||||+||++++.|++|++||+.++.++..+. -..++.++.|||+|.+
T Consensus 557 ~I~vvD~~t~kvvR~f~gh~nritd~--~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~---vd~~~~sls~SPngD~ 631 (910)
T KOG1539|consen 557 SIRVVDVVTRKVVREFWGHGNRITDM--TFSPDGRWLISASMDSTIRTWDLPTGTLIDGLL---VDSPCTSLSFSPNGDF 631 (910)
T ss_pred eEEEEEchhhhhhHHhhccccceeee--EeCCCCcEEEEeecCCcEEEEeccCcceeeeEe---cCCcceeeEECCCCCE
Confidence 99999999999999999999999988 899999999999999999999999999999886 5788999999999999
Q ss_pred EEeec-C-CeeEEEEcccccC
Q psy18231 519 IMSAC-G-NNVKLWTAEEDYG 537 (540)
Q Consensus 519 l~s~~-d-~~i~iw~~~~~~~ 537 (540)
||++. | ..|++|.-..-|.
T Consensus 632 LAT~Hvd~~gIylWsNkslF~ 652 (910)
T KOG1539|consen 632 LATVHVDQNGIYLWSNKSLFK 652 (910)
T ss_pred EEEEEecCceEEEEEchhHhe
Confidence 99999 7 6899998665543
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-31 Score=247.03 Aligned_cols=261 Identities=26% Similarity=0.429 Sum_probs=229.4
Q ss_pred hhhhcccccceeeeecccccc---eeeeeecCeEEEEeCCCCCEEEEeeCCCcEEEEcCCCCeeEEEeecCCcceeEEEE
Q psy18231 138 RILYELPKEWSIRVYRPLTVN---RELFVLSGLMHTRFPVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATA 214 (540)
Q Consensus 138 ~~~~~~~~~~~i~~~~~~~~~---~~~~h~~~v~~v~~spdg~~lat~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~ 214 (540)
..++.++.++.+++|+..+.. ....|...+..+.|+|++++|++++.+|.|++||+.+++.+..+..|...|.++.|
T Consensus 22 ~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~ 101 (289)
T cd00200 22 KLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAF 101 (289)
T ss_pred CEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcccceEEEeccCCcEEEEEE
Confidence 445566678899999987653 34568889999999999999999999999999999998888899999999999999
Q ss_pred eeCCCeEEEeeCCCeEEEEEcCCCceeEeccccCCceeEEEECCCCCEEEEecCCCcEEEEEecCCCCCCcchhhhhHhh
Q psy18231 215 ACDSSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQVRCLNEAL 294 (540)
Q Consensus 215 sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 294 (540)
+|+++++++++.|+.|.+||+.+++....+..|...+.++.|+|++.++++++.||.|++||+++.+.
T Consensus 102 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~------------ 169 (289)
T cd00200 102 SPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKC------------ 169 (289)
T ss_pred cCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEcccccc------------
Confidence 99988899888899999999998998888889999999999999999999888899999999976541
Q ss_pred hhcCCceeEEEEeecccccccccCceeeEEEeeeecccccceeeeeeccceeEEEeecccceecccccccccccchhhhh
Q psy18231 295 KEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQAL 374 (540)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (540)
...+
T Consensus 170 ----------------------------------------------------------------------------~~~~ 173 (289)
T cd00200 170 ----------------------------------------------------------------------------VATL 173 (289)
T ss_pred ----------------------------------------------------------------------------ceeE
Confidence 1133
Q ss_pred hcccccEEEEEecC--CeeEeeeCCCeEEEEeCCCCceEEeeeC--CceEEEEEecCCcEEEeecCCCeEEEEeccccch
Q psy18231 375 KEARDSITSVHVSD--HEILTASLDCRIRRYDIRTGNLVTDYVG--EPIVDACFTRDCQCILTCSTDECLRLFDKATGEL 450 (540)
Q Consensus 375 ~~~~~~v~~l~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~--~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~ 450 (540)
..|...+.++.+++ +.+++++.|+.+++||+++++.+..+.. ..+.+++|+|++.++++++.||.|++||+.+++.
T Consensus 174 ~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~ 253 (289)
T cd00200 174 TGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGEC 253 (289)
T ss_pred ecCccccceEEECCCcCEEEEecCCCcEEEEECCCCceecchhhcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCcee
Confidence 45677899999999 4899999999999999999888877743 5799999999999999988899999999999988
Q ss_pred hhhhccCcCCcceEEEEecCCCCeEEEeeCCCcEEEEE
Q psy18231 451 LEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQ 488 (540)
Q Consensus 451 ~~~~~~~~~~v~~~~~~~s~~~~~l~s~s~dg~i~iwd 488 (540)
+..+..|...+..+ +|++++++|++++.||.|++|+
T Consensus 254 ~~~~~~~~~~i~~~--~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 254 VQTLSGHTNSVTSL--AWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred EEEccccCCcEEEE--EECCCCCEEEEecCCCeEEecC
Confidence 88888888888877 8999999999999999999996
|
|
| >KOG0282|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-32 Score=244.94 Aligned_cols=263 Identities=16% Similarity=0.231 Sum_probs=222.1
Q ss_pred hhhhhhcccccceeeeecccccc----eeeeeecCeEEEEeCCCCCEEEEeeCCCcEEEEcCCCCeeEEEeecCCcceeE
Q psy18231 136 ITRILYELPKEWSIRVYRPLTVN----RELFVLSGLMHTRFPVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVND 211 (540)
Q Consensus 136 ~~~~~~~~~~~~~i~~~~~~~~~----~~~~h~~~v~~v~~spdg~~lat~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~ 211 (540)
...++.+++.|+.|++|+..... ...+|..+|..++|+++|..++++|.|+.|++||+++|+++..+. -...++|
T Consensus 226 ~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~f~-~~~~~~c 304 (503)
T KOG0282|consen 226 KGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTETGQVLSRFH-LDKVPTC 304 (503)
T ss_pred eeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceeeeeeccccceEEEEEe-cCCCcee
Confidence 34566788999999999988733 246799999999999999999999999999999999999999987 4667899
Q ss_pred EEEeeCC-CeEEEeeCCCeEEEEEcCCCceeEeccccCCceeEEEECCCCCEEEEecCCCcEEEEEecCCCCCCcchhhh
Q psy18231 212 ATAACDS-SQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQVRCL 290 (540)
Q Consensus 212 l~~sp~~-~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~ 290 (540)
+.|+|++ +.+++|+.|+.|+.||+++++.++.+..|-+.|..+.|-+++.++++.+.|++++||+.+.......
T Consensus 305 vkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v~ik~----- 379 (503)
T KOG0282|consen 305 VKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSSDDKSVRIWENRIPVPIKN----- 379 (503)
T ss_pred eecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeeeccCccEEEEEcCCCccchh-----
Confidence 9999988 7899999999999999999999999999999999999999999999999999999999887652111
Q ss_pred hHhhhhcCCceeEEEEeecccccccccCceeeEEEeeeecccccceeeeeeccceeEEEeecccceecccccccccccch
Q psy18231 291 NEALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSC 370 (540)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (540)
T Consensus 380 -------------------------------------------------------------------------------- 379 (503)
T KOG0282|consen 380 -------------------------------------------------------------------------------- 379 (503)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhhhcccccEEEEEecC--CeeEeeeCCCeEEEEeCCCCce---EEeeeC----CceEEEEEecCCcEEEeecCCCeEE
Q psy18231 371 FQALKEARDSITSVHVSD--HEILTASLDCRIRRYDIRTGNL---VTDYVG----EPIVDACFTRDCQCILTCSTDECLR 441 (540)
Q Consensus 371 ~~~~~~~~~~v~~l~~~~--~~l~~~~~dg~i~iwd~~~~~~---~~~~~~----~~i~~~~~sp~~~~l~~~~~dg~i~ 441 (540)
....+.-...++..+| .+++.-+.|+.|.++.+...-. ...+.+ +.-..+.|||||.+|++|+.||.+.
T Consensus 380 --i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~ 457 (503)
T KOG0282|consen 380 --IADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVN 457 (503)
T ss_pred --hcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCccEE
Confidence 1111223344666666 8899999999999998764322 233444 3467789999999999999999999
Q ss_pred EEeccccchhhhhccCcCCcceEEEEecCCCC-eEEEeeCCCcEEEEE
Q psy18231 442 LFDKATGELLEEYKGHKSGDFRIECCLDSKDS-QIFCGSSDGKIYKWQ 488 (540)
Q Consensus 442 i~d~~~~~~~~~~~~~~~~v~~~~~~~s~~~~-~l~s~s~dg~i~iwd 488 (540)
+||.++-+.+..+++|.+.+..+ .|+|... .+|+++.||.|++||
T Consensus 458 ~wdwkt~kl~~~lkah~~~ci~v--~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 458 FWDWKTTKLVSKLKAHDQPCIGV--DWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred EeechhhhhhhccccCCcceEEE--EecCCCcceeEecccCceeEecC
Confidence 99999999999999998887666 8888754 599999999999996
|
|
| >KOG0305|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-32 Score=249.94 Aligned_cols=262 Identities=21% Similarity=0.325 Sum_probs=229.3
Q ss_pred ccccceeeeecccccc-eeee--eecCeEEEEeCCCCCEEEEeeCCCcEEEEcCCCCeeEEEeec-CCcceeEEEEeeCC
Q psy18231 143 LPKEWSIRVYRPLTVN-RELF--VLSGLMHTRFPVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGG-HAHEVNDATAACDS 218 (540)
Q Consensus 143 ~~~~~~i~~~~~~~~~-~~~~--h~~~v~~v~~spdg~~lat~~~dg~i~iwd~~~~~~~~~~~~-h~~~v~~l~~sp~~ 218 (540)
.+....+.+|+..+.. ..+. +.+.|+++.|+++|.+||+|..+|.|.|||..+.+.+..+.+ |...|-+++|+ +
T Consensus 193 Valg~~vylW~~~s~~v~~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~--~ 270 (484)
T KOG0305|consen 193 VALGQSVYLWSASSGSVTELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWN--S 270 (484)
T ss_pred EEecceEEEEecCCCceEEeEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCCcCceeEEEecc--C
Confidence 3445678999988765 2222 358999999999999999999999999999999999999998 99999999998 6
Q ss_pred CeEEEeeCCCeEEEEEcCCCceeEe-ccccCCceeEEEECCCCCEEEEecCCCcEEEEEecCCCCCCcchhhhhHhhhhc
Q psy18231 219 SQIASGASDKSVILWEVTTGQPVRR-WREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQVRCLNEALKEA 297 (540)
Q Consensus 219 ~~l~s~s~dg~i~iwd~~~~~~~~~-~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 297 (540)
..+.+|+.|+.|..+|++..+.... +.+|...|..+.|++|+.++|+|+.|+.+.|||.....
T Consensus 271 ~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~---------------- 334 (484)
T KOG0305|consen 271 SVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPE---------------- 334 (484)
T ss_pred ceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCcc----------------
Confidence 7899999999999999998876655 88999999999999999999999999999999984433
Q ss_pred CCceeEEEEeecccccccccCceeeEEEeeeecccccceeeeeeccceeEEEeecccceecccccccccccchhhhhhcc
Q psy18231 298 RDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEA 377 (540)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 377 (540)
....+..|
T Consensus 335 ------------------------------------------------------------------------p~~~~~~H 342 (484)
T KOG0305|consen 335 ------------------------------------------------------------------------PKFTFTEH 342 (484)
T ss_pred ------------------------------------------------------------------------ccEEEecc
Confidence 12267789
Q ss_pred cccEEEEEecC---CeeEeee--CCCeEEEEeCCCCceEEeee-CCceEEEEEecCCcEEEe--ecCCCeEEEEeccccc
Q psy18231 378 RDSITSVHVSD---HEILTAS--LDCRIRRYDIRTGNLVTDYV-GEPIVDACFTRDCQCILT--CSTDECLRLFDKATGE 449 (540)
Q Consensus 378 ~~~v~~l~~~~---~~l~~~~--~dg~i~iwd~~~~~~~~~~~-~~~i~~~~~sp~~~~l~~--~~~dg~i~i~d~~~~~ 449 (540)
...|.+++|+| ++||+|+ .|+.|++||..+++.+..+. +..|.++.|++..+.|++ |..++.|.||+..+.+
T Consensus 343 ~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdtgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~ 422 (484)
T KOG0305|consen 343 TAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVDTGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMK 422 (484)
T ss_pred ceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEecccccCCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccc
Confidence 99999999999 8888864 69999999999999998886 578999999999877766 4457899999999999
Q ss_pred hhhhhccCcCCcceEEEEecCCCCeEEEeeCCCcEEEEEecCCccee
Q psy18231 450 LLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQIS 496 (540)
Q Consensus 450 ~~~~~~~~~~~v~~~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~ 496 (540)
.+..+.+|...|..+ +++|||..+++|+.|.++++|++.+.....
T Consensus 423 ~~~~l~gH~~RVl~l--a~SPdg~~i~t~a~DETlrfw~~f~~~~~~ 467 (484)
T KOG0305|consen 423 LVAELLGHTSRVLYL--ALSPDGETIVTGAADETLRFWNLFDERPKS 467 (484)
T ss_pred eeeeecCCcceeEEE--EECCCCCEEEEecccCcEEeccccCCCCcc
Confidence 999999999998777 899999999999999999999987754433
|
|
| >KOG0641|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-30 Score=207.63 Aligned_cols=282 Identities=16% Similarity=0.205 Sum_probs=228.5
Q ss_pred eeecCeEEEEeCCCCCEEEEeeCCCcEEEEcCC------CC---------eeEEEeecCCcceeEEEEeeCCCeEEEeeC
Q psy18231 162 FVLSGLMHTRFPVDGSYCLTCGSDKKIKLWNPY------RN---------LLLKTYGGHAHEVNDATAACDSSQIASGAS 226 (540)
Q Consensus 162 ~h~~~v~~v~~spdg~~lat~~~dg~i~iwd~~------~~---------~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~ 226 (540)
.....|.+++|+|.|.+.|+|+...+.+|-... .+ ...+.-+.|++.|+|.+|+|+|++|++|+.
T Consensus 30 ~dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~geliatgsn 109 (350)
T KOG0641|consen 30 EDSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIATGSN 109 (350)
T ss_pred cchhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCeEEecCC
Confidence 345789999999999999999999999886422 11 112333679999999999999999999999
Q ss_pred CCeEEEEEcCCCcee-----EeccccCCceeEEEECCC----CCEEEEecC-CCcEEEEEecCCCCCCcchhhhhHhhhh
Q psy18231 227 DKSVILWEVTTGQPV-----RRWREHASKVTCVKFNED----SSVVISGSQ-DNTVMMWDVKSRSHHPIQVRCLNEALKE 296 (540)
Q Consensus 227 dg~i~iwd~~~~~~~-----~~~~~h~~~v~~~~~~~~----~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 296 (540)
|.+|++.-.+...+. ..+.-|.+.|..++|..+ +.+|++++. |..|.+-|...++
T Consensus 110 dk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~--------------- 174 (350)
T KOG0641|consen 110 DKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQ--------------- 174 (350)
T ss_pred CceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCC---------------
Confidence 999999877544322 245679999999999653 457777664 4445555554443
Q ss_pred cCCceeEEEEeecccccccccCceeeEEEeeeecccccceeeeeeccceeEEEeecccceecccccccccccchhhhhhc
Q psy18231 297 ARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKE 376 (540)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (540)
.++.+.+
T Consensus 175 -------------------------------------------------------------------------~~~a~sg 181 (350)
T KOG0641|consen 175 -------------------------------------------------------------------------GFHALSG 181 (350)
T ss_pred -------------------------------------------------------------------------cceeecC
Confidence 2336778
Q ss_pred ccccEEEE-EecCCeeEeeeCCCeEEEEeCCCCceEEeeeC---------CceEEEEEecCCcEEEeecCCCeEEEEecc
Q psy18231 377 ARDSITSV-HVSDHEILTASLDCRIRRYDIRTGNLVTDYVG---------EPIVDACFTRDCQCILTCSTDECLRLFDKA 446 (540)
Q Consensus 377 ~~~~v~~l-~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~---------~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~ 446 (540)
|.+-|.++ .|+.-++++|+.|.+|++||++-..++..+.. ..|.+++..|.|++|++|-.|....+||++
T Consensus 182 htghilalyswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydir 261 (350)
T KOG0641|consen 182 HTGHILALYSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIR 261 (350)
T ss_pred CcccEEEEEEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEee
Confidence 88888887 68889999999999999999998888877642 469999999999999999999999999999
Q ss_pred ccchhhhhccCcCCcceEEEEecCCCCeEEEeeCCCcEEEEEecCC--cceeEEEecccceeeeEEEEcCCCcEEEeec-
Q psy18231 447 TGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDS--SQISTLIHSVGKAVVNSLCSHPTRKHIMSAC- 523 (540)
Q Consensus 447 ~~~~~~~~~~~~~~v~~~~~~~s~~~~~l~s~s~dg~i~iwd~~~~--~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~- 523 (540)
.+++++.|..|...|.++ .|+|.-.|+.+++.|..|++-|++-. ..+..+....|...+-.+.|+|..-.+++.+
T Consensus 262 g~r~iq~f~phsadir~v--rfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~ehkdk~i~~rwh~~d~sfisssa 339 (350)
T KOG0641|consen 262 GGRMIQRFHPHSADIRCV--RFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKDKAIQCRWHPQDFSFISSSA 339 (350)
T ss_pred CCceeeeeCCCccceeEE--EeCCCceEEEEecccceEEEeecccchhhcCceEEEEeccCceEEEEecCccceeeeccC
Confidence 999999999999999999 79999999999999999999998642 2222222237999999999999998888888
Q ss_pred CCeeEEEEcc
Q psy18231 524 GNNVKLWTAE 533 (540)
Q Consensus 524 d~~i~iw~~~ 533 (540)
|.++.+|-++
T Consensus 340 dkt~tlwa~~ 349 (350)
T KOG0641|consen 340 DKTATLWALN 349 (350)
T ss_pred cceEEEeccC
Confidence 9999999875
|
|
| >KOG0274|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-31 Score=258.82 Aligned_cols=266 Identities=25% Similarity=0.463 Sum_probs=235.8
Q ss_pred hhhhcccccceeeeecccccce----eeeeecCeEEEEeCCCCCEEEEeeCCCcEEEEcCCCCeeEEEeecCCcceeEEE
Q psy18231 138 RILYELPKEWSIRVYRPLTVNR----ELFVLSGLMHTRFPVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDAT 213 (540)
Q Consensus 138 ~~~~~~~~~~~i~~~~~~~~~~----~~~h~~~v~~v~~spdg~~lat~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~ 213 (540)
..+.....+.+|++|+..+... ..+|.+.|.+++|..-+.+|++|+.|.++++||..+|++...+.+|.+.|.++.
T Consensus 219 ~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~stv~~~~ 298 (537)
T KOG0274|consen 219 GFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTHSLQGHTSSVRCLT 298 (537)
T ss_pred CeEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEEEEecCCCceEEEEE
Confidence 3445678889999999988653 567999999999998788999999999999999999999999999999999988
Q ss_pred EeeCCCeEEEeeCCCeEEEEEcCCCceeEeccccCCceeEEEECCCCCEEEEecCCCcEEEEEecCCCCCCcchhhhhHh
Q psy18231 214 AACDSSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQVRCLNEA 293 (540)
Q Consensus 214 ~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 293 (540)
.. +.++++|+.|.+|++|+++++..+..+.+|.++|.++..+ +.++++|+.||+|++||+.+++
T Consensus 299 ~~--~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~~~------------ 362 (537)
T KOG0274|consen 299 ID--PFLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPRTGK------------ 362 (537)
T ss_pred cc--CceEeeccCCceEEEEeccCcceEEEeccccccEEEEEec--CCEEEEEecCceEEEEEhhhce------------
Confidence 75 5678899999999999999999999999999999999997 7799999999999999998766
Q ss_pred hhhcCCceeEEEEeecccccccccCceeeEEEeeeecccccceeeeeeccceeEEEeecccceecccccccccccchhhh
Q psy18231 294 LKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQA 373 (540)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (540)
++..
T Consensus 363 ----------------------------------------------------------------------------cl~s 366 (537)
T KOG0274|consen 363 ----------------------------------------------------------------------------CLKS 366 (537)
T ss_pred ----------------------------------------------------------------------------eeee
Confidence 4558
Q ss_pred hhcccccEEEEEecC-CeeEeeeCCCeEEEEeCCCC-ceEEeeeCCceEEEEEecCCcEEEeecCCCeEEEEeccccchh
Q psy18231 374 LKEARDSITSVHVSD-HEILTASLDCRIRRYDIRTG-NLVTDYVGEPIVDACFTRDCQCILTCSTDECLRLFDKATGELL 451 (540)
Q Consensus 374 ~~~~~~~v~~l~~~~-~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~ 451 (540)
+.+|...|.++.+.+ ..+++|+.|++|++||+++. +++..+.++.-..-.+...+++|++++.|++|++||..+++++
T Consensus 367 l~gH~~~V~sl~~~~~~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l~~~~~~Lvs~~aD~~Ik~WD~~~~~~~ 446 (537)
T KOG0274|consen 367 LSGHTGRVYSLIVDSENRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVSSLLLRDNFLVSSSADGTIKLWDAEEGECL 446 (537)
T ss_pred ecCCcceEEEEEecCcceEEeeeeccceEeecCCchhhhhhhhcCCcccccccccccceeEeccccccEEEeecccCcee
Confidence 889999999999999 99999999999999999999 9999998865444555567899999999999999999999999
Q ss_pred hhhcc-CcCCcceEEEEecCCCCeEEEeeCCCcEEEEEecCCcceeEEE
Q psy18231 452 EEYKG-HKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLI 499 (540)
Q Consensus 452 ~~~~~-~~~~v~~~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~ 499 (540)
+++.+ |...+..+ ++. ...+++++.||++++||+++++....+.
T Consensus 447 ~~~~~~~~~~v~~l--~~~--~~~il~s~~~~~~~l~dl~~~~~~~~l~ 491 (537)
T KOG0274|consen 447 RTLEGRHVGGVSAL--ALG--KEEILCSSDDGSVKLWDLRSGTLIRTLL 491 (537)
T ss_pred eeeccCCcccEEEe--ecC--cceEEEEecCCeeEEEecccCchhhhhh
Confidence 99998 56666666 333 4679999999999999999999888773
|
|
| >KOG0647|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-31 Score=223.61 Aligned_cols=268 Identities=16% Similarity=0.217 Sum_probs=217.0
Q ss_pred ecCeEEEEeCC-CCCEEEEeeCCCcEEEEcCCC-CeeE-EEeecCCcceeEEEEeeCCCeEEEeeCCCeEEEEEcCCCce
Q psy18231 164 LSGLMHTRFPV-DGSYCLTCGSDKKIKLWNPYR-NLLL-KTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQP 240 (540)
Q Consensus 164 ~~~v~~v~~sp-dg~~lat~~~dg~i~iwd~~~-~~~~-~~~~~h~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~ 240 (540)
.+.|.+++||| ...+++.+|.||+||+|+++. |... +....|.++|.+++|+.||..+++|+.|+.+++||+.+++
T Consensus 27 ~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q- 105 (347)
T KOG0647|consen 27 EDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQ- 105 (347)
T ss_pred ccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCCC-
Confidence 47899999999 555666899999999999986 3332 3446699999999999999999999999999999999995
Q ss_pred eEeccccCCceeEEEECCCCC--EEEEecCCCcEEEEEecCCCCCCcchhhhhHhhhhcCCceeEEEEeecccccccccC
Q psy18231 241 VRRWREHASKVTCVKFNEDSS--VVISGSQDNTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHLSNG 318 (540)
Q Consensus 241 ~~~~~~h~~~v~~~~~~~~~~--~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (540)
+..+..|..+|.++.|-+... .|+|||.|++|++||.+.... +.
T Consensus 106 ~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~p--v~-------------------------------- 151 (347)
T KOG0647|consen 106 VSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNP--VA-------------------------------- 151 (347)
T ss_pred eeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCe--ee--------------------------------
Confidence 455778999999999988655 899999999999999987652 11
Q ss_pred ceeeEEEeeeecccccceeeeeeccceeEEEeecccceecccccccccccchhhhhhcccccEEEEEecCCeeEeeeCCC
Q psy18231 319 LLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEARDSITSVHVSDHEILTASLDC 398 (540)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~dg 398 (540)
...-.+.++++..-..+++++..++
T Consensus 152 -------------------------------------------------------t~~LPeRvYa~Dv~~pm~vVata~r 176 (347)
T KOG0647|consen 152 -------------------------------------------------------TLQLPERVYAADVLYPMAVVATAER 176 (347)
T ss_pred -------------------------------------------------------eeeccceeeehhccCceeEEEecCC
Confidence 0012355666666668899999999
Q ss_pred eEEEEeCCCCceEEeeeC----CceEEEEEecCCcEEEeecCCCeEEEEecccc--chhhhhccCcC------CcceE-E
Q psy18231 399 RIRRYDIRTGNLVTDYVG----EPIVDACFTRDCQCILTCSTDECLRLFDKATG--ELLEEYKGHKS------GDFRI-E 465 (540)
Q Consensus 399 ~i~iwd~~~~~~~~~~~~----~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~--~~~~~~~~~~~------~v~~~-~ 465 (540)
.|.+|+++.+........ ..+.|++..+|....+.|+.+|.+.|..+..+ +.-.+|+.|.. .|+.+ .
T Consensus 177 ~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNs 256 (347)
T KOG0647|consen 177 HIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNS 256 (347)
T ss_pred cEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecc
Confidence 999999987755433322 46899999999888899999999999998876 33445667763 13322 2
Q ss_pred EEecCCCCeEEEeeCCCcEEEEEecCCcceeEEEecccceeeeEEEEcCCCcEEEeec
Q psy18231 466 CCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC 523 (540)
Q Consensus 466 ~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~ 523 (540)
++|+|.-..|++++.||++.+||-.....+.+.+ .|..+|++.+|+.+|.+++-+.
T Consensus 257 i~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~--~~~qpItcc~fn~~G~ifaYA~ 312 (347)
T KOG0647|consen 257 IAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTSE--THPQPITCCSFNRNGSIFAYAL 312 (347)
T ss_pred eEeecccceEEEecCCceEEEecchhhhhhhccC--cCCCccceeEecCCCCEEEEEe
Confidence 3899999999999999999999987777788777 7999999999999999988653
|
|
| >KOG0277|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-31 Score=219.45 Aligned_cols=259 Identities=18% Similarity=0.290 Sum_probs=213.3
Q ss_pred cccccceeeeecccccc--ee---eeeecCeEEEEeCCC-CCEEEEeeCCCcEEEEcCC-CCeeEEEeecCCcceeEEEE
Q psy18231 142 ELPKEWSIRVYRPLTVN--RE---LFVLSGLMHTRFPVD-GSYCLTCGSDKKIKLWNPY-RNLLLKTYGGHAHEVNDATA 214 (540)
Q Consensus 142 ~~~~~~~i~~~~~~~~~--~~---~~h~~~v~~v~~spd-g~~lat~~~dg~i~iwd~~-~~~~~~~~~~h~~~v~~l~~ 214 (540)
.+...+.+.+.+..... .+ ..-.+.+..++|+++ .+.+++++.||+++|||+. ...++..++.|..+|.++.|
T Consensus 33 Gl~G~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdw 112 (311)
T KOG0277|consen 33 GLAGNGRLFILEVTDPKGIQECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDW 112 (311)
T ss_pred ccccCceEEEEecCCCCCeEEEEeeecccceeEeeecCCCcceEEEEecCceEEEeccCCCCcchhHHHhhhhheEEecc
Confidence 35566777777764221 22 234578999999995 4567788889999999954 34688899999999999999
Q ss_pred ee-CCCeEEEeeCCCeEEEEEcCCCceeEeccccCCceeEEEECC-CCCEEEEecCCCcEEEEEecCCCCCCcchhhhhH
Q psy18231 215 AC-DSSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNE-DSSVVISGSQDNTVMMWDVKSRSHHPIQVRCLNE 292 (540)
Q Consensus 215 sp-~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~ 292 (540)
++ ++..++++|.|++|++|+...++.++++.+|...|....|+| .++.++++|.|+++++||++....
T Consensus 113 n~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk---------- 182 (311)
T KOG0277|consen 113 NTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGK---------- 182 (311)
T ss_pred ccccceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCc----------
Confidence 98 566788889999999999999999999999999999999999 678999999999999999876531
Q ss_pred hhhhcCCceeEEEEeecccccccccCceeeEEEeeeecccccceeeeeeccceeEEEeecccceecccccccccccchhh
Q psy18231 293 ALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQ 372 (540)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (540)
..
T Consensus 183 ------------------------------------------------------------------------------~~ 184 (311)
T KOG0277|consen 183 ------------------------------------------------------------------------------FM 184 (311)
T ss_pred ------------------------------------------------------------------------------ee
Confidence 01
Q ss_pred hhhcccccEEEEEecC---CeeEeeeCCCeEEEEeCCCCc-eEEeeeCC--ceEEEEEecC-CcEEEeecCCCeEEEEec
Q psy18231 373 ALKEARDSITSVHVSD---HEILTASLDCRIRRYDIRTGN-LVTDYVGE--PIVDACFTRD-CQCILTCSTDECLRLFDK 445 (540)
Q Consensus 373 ~~~~~~~~v~~l~~~~---~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~--~i~~~~~sp~-~~~l~~~~~dg~i~i~d~ 445 (540)
.+..|...|.+..|+. ..+++|+.|+.|+.||+++-+ ++..+.++ .|..+.|||. ...|++++.|-+++|||.
T Consensus 185 ~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~ 264 (311)
T KOG0277|consen 185 SIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDP 264 (311)
T ss_pred EEEeccceeEeecccccCCcEEEecCCCceEEEEehhhccccceeecCCceEEEEEecCcchhhHhhhccccceEEeccc
Confidence 3557888999999987 889999999999999999754 56677665 6999999995 568999999999999998
Q ss_pred ccc-chhhhhccCcCCcceEEEEecCCCCeEEEeeCCCcEEEEEe
Q psy18231 446 ATG-ELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQL 489 (540)
Q Consensus 446 ~~~-~~~~~~~~~~~~v~~~~~~~s~~~~~l~s~s~dg~i~iwd~ 489 (540)
..+ ..+.+...|++-+..+.+... ++.++|+.+.|+.++||+.
T Consensus 265 ~~~ds~~e~~~~HtEFv~g~Dws~~-~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 265 ERQDSAIETVDHHTEFVCGLDWSLF-DPGQVASTGWDELLYVWNP 308 (311)
T ss_pred ccchhhhhhhhccceEEeccccccc-cCceeeecccccceeeecc
Confidence 854 567788888888877754433 5678999999999999983
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-30 Score=250.92 Aligned_cols=265 Identities=18% Similarity=0.260 Sum_probs=205.8
Q ss_pred eeecCeEEEEeCCCCCEEEEeeCCCcEEEEcCCCCeeE-------------EEeecCCcceeEEEEee-CCCeEEEeeCC
Q psy18231 162 FVLSGLMHTRFPVDGSYCLTCGSDKKIKLWNPYRNLLL-------------KTYGGHAHEVNDATAAC-DSSQIASGASD 227 (540)
Q Consensus 162 ~h~~~v~~v~~spdg~~lat~~~dg~i~iwd~~~~~~~-------------~~~~~h~~~v~~l~~sp-~~~~l~s~s~d 227 (540)
.|...|.....++|+..+++++.+.....|+...+..+ ..+.+|.+.|++++|+| ++++|++|+.|
T Consensus 18 ~~~~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~D 97 (493)
T PTZ00421 18 RHFLNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASED 97 (493)
T ss_pred cceeccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCC
Confidence 35566677777778766777776777777765433222 24678999999999999 88999999999
Q ss_pred CeEEEEEcCCC-------ceeEeccccCCceeEEEECCCC-CEEEEecCCCcEEEEEecCCCCCCcchhhhhHhhhhcCC
Q psy18231 228 KSVILWEVTTG-------QPVRRWREHASKVTCVKFNEDS-SVVISGSQDNTVMMWDVKSRSHHPIQVRCLNEALKEARD 299 (540)
Q Consensus 228 g~i~iwd~~~~-------~~~~~~~~h~~~v~~~~~~~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 299 (540)
++|++||+.++ +++..+.+|...|.+++|+|++ ++|++++.|++|++||+++++.
T Consensus 98 gtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~----------------- 160 (493)
T PTZ00421 98 GTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKA----------------- 160 (493)
T ss_pred CEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeE-----------------
Confidence 99999999765 3567788999999999999975 6999999999999999987651
Q ss_pred ceeEEEEeecccccccccCceeeEEEeeeecccccceeeeeeccceeEEEeecccceecccccccccccchhhhhhcccc
Q psy18231 300 SITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEARD 379 (540)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (540)
...+..|..
T Consensus 161 -----------------------------------------------------------------------~~~l~~h~~ 169 (493)
T PTZ00421 161 -----------------------------------------------------------------------VEVIKCHSD 169 (493)
T ss_pred -----------------------------------------------------------------------EEEEcCCCC
Confidence 114557888
Q ss_pred cEEEEEecC--CeeEeeeCCCeEEEEeCCCCceEEeeeCC---ceEEEEEecCCcEEEeec----CCCeEEEEeccccc-
Q psy18231 380 SITSVHVSD--HEILTASLDCRIRRYDIRTGNLVTDYVGE---PIVDACFTRDCQCILTCS----TDECLRLFDKATGE- 449 (540)
Q Consensus 380 ~v~~l~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~---~i~~~~~sp~~~~l~~~~----~dg~i~i~d~~~~~- 449 (540)
.|.+++|++ .+|++++.|+.|++||+++++.+..+.++ ....+.|.+++..+++++ .|+.|++||+++..
T Consensus 170 ~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~ 249 (493)
T PTZ00421 170 QITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMAS 249 (493)
T ss_pred ceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCC
Confidence 999999998 78999999999999999999988887653 345778899887777654 47999999998754
Q ss_pred hhhhhccCcCCcceEEEEecCCCCeEEEee-CCCcEEEEEecCCcceeEEEecccceeeeEEEEcCCC
Q psy18231 450 LLEEYKGHKSGDFRIECCLDSKDSQIFCGS-SDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTR 516 (540)
Q Consensus 450 ~~~~~~~~~~~v~~~~~~~s~~~~~l~s~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~ 516 (540)
++.....+.... .....|++++++|++++ .|+.|++||+.+++.+..... .+..++..++|.|..
T Consensus 250 p~~~~~~d~~~~-~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~~-~s~~~~~g~~~~pk~ 315 (493)
T PTZ00421 250 PYSTVDLDQSSA-LFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSSY-SSVEPHKGLCMMPKW 315 (493)
T ss_pred ceeEeccCCCCc-eEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEeec-cCCCCCcceEecccc
Confidence 333333333222 22236899999999887 599999999999988776653 456678889998853
|
|
| >KOG0305|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-30 Score=240.93 Aligned_cols=272 Identities=18% Similarity=0.313 Sum_probs=234.7
Q ss_pred EEEEeCCCCCEEEEeeCCCcEEEEcCCCCeeEEEeecCCcceeEEEEeeCCCeEEEeeCCCeEEEEEcCCCceeEeccc-
Q psy18231 168 MHTRFPVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPVRRWRE- 246 (540)
Q Consensus 168 ~~v~~spdg~~lat~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~- 246 (540)
+-+.|+ ..+.||+|. ...|.+|+..++........+...|+++.|+++|.+|++|..+|.|.|||..+.+.+..+.+
T Consensus 181 nlldWs-s~n~laVal-g~~vylW~~~s~~v~~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~ 258 (484)
T KOG0305|consen 181 NLLDWS-SANVLAVAL-GQSVYLWSASSGSVTELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGS 258 (484)
T ss_pred hHhhcc-cCCeEEEEe-cceEEEEecCCCceEEeEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCC
Confidence 445677 344677765 56899999999987666665689999999999999999999999999999999999999988
Q ss_pred cCCceeEEEECCCCCEEEEecCCCcEEEEEecCCCCCCcchhhhhHhhhhcCCceeEEEEeecccccccccCceeeEEEe
Q psy18231 247 HASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFA 326 (540)
Q Consensus 247 h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (540)
|...|-+++|. +..+.+|+.|+.|..+|++..+.
T Consensus 259 h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~-------------------------------------------- 292 (484)
T KOG0305|consen 259 HASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQH-------------------------------------------- 292 (484)
T ss_pred cCceeEEEecc--CceEEEecCCCcEEEEEEecchh--------------------------------------------
Confidence 99999999998 66899999999999999988752
Q ss_pred eeecccccceeeeeeccceeEEEeecccceecccccccccccchhhhhhcccccEEEEEecC--CeeEeeeCCCeEEEEe
Q psy18231 327 FRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEARDSITSVHVSD--HEILTASLDCRIRRYD 404 (540)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~--~~l~~~~~dg~i~iwd 404 (540)
....+.+|...|..++|++ .++++|+.|+.+.|||
T Consensus 293 -------------------------------------------~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd 329 (484)
T KOG0305|consen 293 -------------------------------------------VVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWD 329 (484)
T ss_pred -------------------------------------------hhhhhhcccceeeeeEECCCCCeeccCCCccceEecc
Confidence 1114778999999999998 8999999999999999
Q ss_pred CCCCceEEeeeC--CceEEEEEec-CCcEEEeec--CCCeEEEEeccccchhhhhccCcCCcceEEEEecCCCCeEEEe-
Q psy18231 405 IRTGNLVTDYVG--EPIVDACFTR-DCQCILTCS--TDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCG- 478 (540)
Q Consensus 405 ~~~~~~~~~~~~--~~i~~~~~sp-~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~s~~~~~l~s~- 478 (540)
....+++..+.. ..|.+++|+| ...+||+|+ .|++|++||..+++.+..+.... .|..+ .|++..+-|+++
T Consensus 330 ~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdtgs-QVcsL--~Wsk~~kEi~sth 406 (484)
T KOG0305|consen 330 GLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVDTGS-QVCSL--IWSKKYKELLSTH 406 (484)
T ss_pred CCCccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEecccccCC-ceeeE--EEcCCCCEEEEec
Confidence 988888877765 5799999999 667888865 59999999999999988876543 46666 899998766654
Q ss_pred -eCCCcEEEEEecCCcceeEEEecccceeeeEEEEcCCCcEEEeec-CCeeEEEEcccc
Q psy18231 479 -SSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC-GNNVKLWTAEED 535 (540)
Q Consensus 479 -s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~-d~~i~iw~~~~~ 535 (540)
..++.|.||+..+.+++..+. +|...|..+++||||..+++|+ |.++++|++-+.
T Consensus 407 G~s~n~i~lw~~ps~~~~~~l~--gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 407 GYSENQITLWKYPSMKLVAELL--GHTSRVLYLALSPDGETIVTGAADETLRFWNLFDE 463 (484)
T ss_pred CCCCCcEEEEeccccceeeeec--CCcceeEEEEECCCCCEEEEecccCcEEeccccCC
Confidence 467789999999999999999 9999999999999999999999 999999998653
|
|
| >KOG0299|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-30 Score=229.88 Aligned_cols=281 Identities=18% Similarity=0.254 Sum_probs=228.5
Q ss_pred eeeeeecCeEEEEeCCCCCEEEEeeCCCcEEEEcCCCCeeE----EE-------------e-ecCCcceeEEEEeeCCCe
Q psy18231 159 RELFVLSGLMHTRFPVDGSYCLTCGSDKKIKLWNPYRNLLL----KT-------------Y-GGHAHEVNDATAACDSSQ 220 (540)
Q Consensus 159 ~~~~h~~~v~~v~~spdg~~lat~~~dg~i~iwd~~~~~~~----~~-------------~-~~h~~~v~~l~~sp~~~~ 220 (540)
....|.-++.+++++||++++++++.+|+|.=|++.+++.. .+ - ++|...+.+++.++||++
T Consensus 137 ~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgky 216 (479)
T KOG0299|consen 137 VIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGKY 216 (479)
T ss_pred eeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCcE
Confidence 34569999999999999999999999999999998877533 11 1 278899999999999999
Q ss_pred EEEeeCCCeEEEEEcCCCceeEeccccCCceeEEEECCCCCEEEEecCCCcEEEEEecCCCCCCcchhhhhHhhhhcCCc
Q psy18231 221 IASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQVRCLNEALKEARDS 300 (540)
Q Consensus 221 l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 300 (540)
||+|+.|..|.||+.++.+.++.+.+|.+.|.+++|-...+.+++++.|++|++|+++...
T Consensus 217 latgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s------------------- 277 (479)
T KOG0299|consen 217 LATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLS------------------- 277 (479)
T ss_pred EEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhH-------------------
Confidence 9999999999999999999999999999999999999888899999999999999997654
Q ss_pred eeEEEEeecccccccccCceeeEEEeeeecccccceeeeeeccceeEEEeecccceecccccccccccchhhhhhccccc
Q psy18231 301 ITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEARDS 380 (540)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (540)
.+.++.+|++.
T Consensus 278 ---------------------------------------------------------------------~vetlyGHqd~ 288 (479)
T KOG0299|consen 278 ---------------------------------------------------------------------YVETLYGHQDG 288 (479)
T ss_pred ---------------------------------------------------------------------HHHHHhCCccc
Confidence 34588899999
Q ss_pred EEEEEecC-CeeE-eeeCCCeEEEEeCCCCceE-EeeeCCceEEEEEecCCcEEEeecCCCeEEEEeccccchhhhhcc-
Q psy18231 381 ITSVHVSD-HEIL-TASLDCRIRRYDIRTGNLV-TDYVGEPIVDACFTRDCQCILTCSTDECLRLFDKATGELLEEYKG- 456 (540)
Q Consensus 381 v~~l~~~~-~~l~-~~~~dg~i~iwd~~~~~~~-~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~- 456 (540)
|.+|.... ..++ +|+.|+++++|++.....+ ..-....+-|++|-.+ ..+++|+.+|.|.+|++.+.+++.+.+.
T Consensus 289 v~~IdaL~reR~vtVGgrDrT~rlwKi~eesqlifrg~~~sidcv~~In~-~HfvsGSdnG~IaLWs~~KKkplf~~~~A 367 (479)
T KOG0299|consen 289 VLGIDALSRERCVTVGGRDRTVRLWKIPEESQLIFRGGEGSIDCVAFIND-EHFVSGSDNGSIALWSLLKKKPLFTSRLA 367 (479)
T ss_pred eeeechhcccceEEeccccceeEEEeccccceeeeeCCCCCeeeEEEecc-cceeeccCCceEEEeeecccCceeEeecc
Confidence 99998877 4444 5569999999999544332 2223358999999754 6788999999999999998887755432
Q ss_pred Cc-----------CCcceEEEEecCCCCeEEEeeCCCcEEEEEecCC----cceeEEEecccceeeeEEEEcCCCcEEEe
Q psy18231 457 HK-----------SGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDS----SQISTLIHSVGKAVVNSLCSHPTRKHIMS 521 (540)
Q Consensus 457 ~~-----------~~v~~~~~~~s~~~~~l~s~s~dg~i~iwd~~~~----~~~~~~~~~~~~~~v~~l~~s~d~~~l~s 521 (540)
|. ..|+++ +..|...++|+|+.+|.|++|.+.++ .++..+ .-.+.|++++|+++|++|++
T Consensus 368 Hgv~~~~~~~~~~~Witsl--a~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~l---s~~GfVNsl~f~~sgk~iva 442 (479)
T KOG0299|consen 368 HGVIPELDPVNGNFWITSL--AVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSL---SLVGFVNSLAFSNSGKRIVA 442 (479)
T ss_pred ccccCCccccccccceeee--EecccCceEEecCCCCceEEEEecCCccccceeeec---ccccEEEEEEEccCCCEEEE
Confidence 11 134444 77888899999999999999999887 333444 36788999999999997777
Q ss_pred ec--CCeeEEEEcc
Q psy18231 522 AC--GNNVKLWTAE 533 (540)
Q Consensus 522 ~~--d~~i~iw~~~ 533 (540)
|- ...+--|-..
T Consensus 443 giGkEhRlGRW~~~ 456 (479)
T KOG0299|consen 443 GIGKEHRLGRWWCL 456 (479)
T ss_pred ecccccccceeeEe
Confidence 65 5555555443
|
|
| >KOG0278|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-32 Score=223.39 Aligned_cols=243 Identities=20% Similarity=0.320 Sum_probs=218.1
Q ss_pred eeeeecCeEEEEeCCCCCEEEEeeCCCcEEEEcCCCCeeEEEeecCCcceeEEEEeeCCCeEEEeeCCCeEEEEEcCCCc
Q psy18231 160 ELFVLSGLMHTRFPVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQ 239 (540)
Q Consensus 160 ~~~h~~~v~~v~~spdg~~lat~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~ 239 (540)
..+|.++|.+..++.+..+-|+++.|-+.+|||.-+|..+.+|. |+..|.+++|+.|.++|++|+.+..++|+|++..+
T Consensus 55 feghkgavw~~~l~~na~~aasaaadftakvw~a~tgdelhsf~-hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~ 133 (334)
T KOG0278|consen 55 FEGHKGAVWSATLNKNATRAASAAADFTAKVWDAVTGDELHSFE-HKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPK 133 (334)
T ss_pred eeccCcceeeeecCchhhhhhhhcccchhhhhhhhhhhhhhhhh-hhheeeeEEecccchhhhccchHHHhhhhhccCCC
Confidence 45799999999999999999999999999999999999999997 89999999999999999999999999999998754
Q ss_pred -eeEeccccCCceeEEEECCCCCEEEEecCCCcEEEEEecCCCCCCcchhhhhHhhhhcCCceeEEEEeecccccccccC
Q psy18231 240 -PVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHLSNG 318 (540)
Q Consensus 240 -~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (540)
+...+.+|.+.|..+.|....+.+++++.|++|++||.+++.....
T Consensus 134 App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~s--------------------------------- 180 (334)
T KOG0278|consen 134 APPKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQS--------------------------------- 180 (334)
T ss_pred CCchhhcCCCCcceeEEEeccCceEEeeccCCceEEEEeccCcEEEE---------------------------------
Confidence 5567889999999999999888999999999999999999872110
Q ss_pred ceeeEEEeeeecccccceeeeeeccceeEEEeecccceecccccccccccchhhhhhcccccEEEEEecC-CeeEeeeCC
Q psy18231 319 LLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEARDSITSVHVSD-HEILTASLD 397 (540)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~-~~l~~~~~d 397 (540)
...+..|+++.+++ ..+++....
T Consensus 181 --------------------------------------------------------L~~~s~VtSlEvs~dG~ilTia~g 204 (334)
T KOG0278|consen 181 --------------------------------------------------------LEFNSPVTSLEVSQDGRILTIAYG 204 (334)
T ss_pred --------------------------------------------------------EecCCCCcceeeccCCCEEEEecC
Confidence 12246778888888 788888899
Q ss_pred CeEEEEeCCCCceEEeeeC-CceEEEEEecCCcEEEeecCCCeEEEEeccccchhhhh-ccCcCCcceEEEEecCCCCeE
Q psy18231 398 CRIRRYDIRTGNLVTDYVG-EPIVDACFTRDCQCILTCSTDECLRLFDKATGELLEEY-KGHKSGDFRIECCLDSKDSQI 475 (540)
Q Consensus 398 g~i~iwd~~~~~~~~~~~~-~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~-~~~~~~v~~~~~~~s~~~~~l 475 (540)
+.|.+||..+..+++.+.- -.|.+.+++|+...+++|++|..++.||..+++.+..+ ++|.++|.++ .|+|||...
T Consensus 205 ssV~Fwdaksf~~lKs~k~P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcV--rFSPdGE~y 282 (334)
T KOG0278|consen 205 SSVKFWDAKSFGLLKSYKMPCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCV--RFSPDGELY 282 (334)
T ss_pred ceeEEeccccccceeeccCccccccccccCCCceEEecCcceEEEEEeccCCceeeecccCCCCceEEE--EECCCCcee
Confidence 9999999999999988875 58999999999999999999999999999999998886 9999999999 799999999
Q ss_pred EEeeCCCcEEEEEecCCcc
Q psy18231 476 FCGSSDGKIYKWQLVDSSQ 494 (540)
Q Consensus 476 ~s~s~dg~i~iwd~~~~~~ 494 (540)
++||+||+|++|....++.
T Consensus 283 AsGSEDGTirlWQt~~~~~ 301 (334)
T KOG0278|consen 283 ASGSEDGTIRLWQTTPGKT 301 (334)
T ss_pred eccCCCceEEEEEecCCCc
Confidence 9999999999999766544
|
|
| >KOG1036|consensus | Back alignment and domain information |
|---|
Probab=99.98 E-value=2.7e-30 Score=217.43 Aligned_cols=264 Identities=19% Similarity=0.269 Sum_probs=222.2
Q ss_pred ecCeEEEEeCCCCCEEEEeeCCCcEEEEcCCCCeeEEEeecCCcceeEEEEeeCCCeEEEeeCCCeEEEEEcCCCceeEe
Q psy18231 164 LSGLMHTRFPVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPVRR 243 (540)
Q Consensus 164 ~~~v~~v~~spdg~~lat~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~ 243 (540)
.+.|+++.|+|.+..|++++.||++++||.....+...++ |..++.+++|.+ ...+++|+.||.|+.+|++++....
T Consensus 13 ~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~-~~~plL~c~F~d-~~~~~~G~~dg~vr~~Dln~~~~~~- 89 (323)
T KOG1036|consen 13 EDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFK-HGAPLLDCAFAD-ESTIVTGGLDGQVRRYDLNTGNEDQ- 89 (323)
T ss_pred hhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhhee-cCCceeeeeccC-CceEEEeccCceEEEEEecCCccee-
Confidence 4679999999999999999999999999999887777776 899999999996 5679999999999999998887654
Q ss_pred ccccCCceeEEEECCCCCEEEEecCCCcEEEEEecCCCCCCcchhhhhHhhhhcCCceeEEEEeecccccccccCceeeE
Q psy18231 244 WREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHLSNGLLTKL 323 (540)
Q Consensus 244 ~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (540)
+..|..+|.|+.+++....+++||.|++|++||.+.... ..
T Consensus 90 igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~--~~------------------------------------- 130 (323)
T KOG1036|consen 90 IGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVV--VG------------------------------------- 130 (323)
T ss_pred eccCCCceEEEEeeccCCeEEEcccCccEEEEecccccc--cc-------------------------------------
Confidence 557999999999999888999999999999999986321 00
Q ss_pred EEeeeecccccceeeeeeccceeEEEeecccceecccccccccccchhhhhhcccccEEEEEecCCeeEeeeCCCeEEEE
Q psy18231 324 VFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEARDSITSVHVSDHEILTASLDCRIRRY 403 (540)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~dg~i~iw 403 (540)
. ......|.++....+.|++|+.|..+.+|
T Consensus 131 -------------------------------------------------~-~d~~kkVy~~~v~g~~LvVg~~~r~v~iy 160 (323)
T KOG1036|consen 131 -------------------------------------------------T-FDQGKKVYCMDVSGNRLVVGTSDRKVLIY 160 (323)
T ss_pred -------------------------------------------------c-cccCceEEEEeccCCEEEEeecCceEEEE
Confidence 1 11234889999999999999999999999
Q ss_pred eCCCCceEEeeeC----CceEEEEEecCCcEEEeecCCCeEEEEecccc----chhhhhccCcC---------CcceEEE
Q psy18231 404 DIRTGNLVTDYVG----EPIVDACFTRDCQCILTCSTDECLRLFDKATG----ELLEEYKGHKS---------GDFRIEC 466 (540)
Q Consensus 404 d~~~~~~~~~~~~----~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~----~~~~~~~~~~~---------~v~~~~~ 466 (540)
|+++......... -.+.++++-|++.=+++++-||.|.+=.+... +....|+.|.. +|..+
T Consensus 161 DLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai-- 238 (323)
T KOG1036|consen 161 DLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAI-- 238 (323)
T ss_pred EcccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEecee--
Confidence 9998765543322 46899999999888999999999988666554 23345666653 45566
Q ss_pred EecCCCCeEEEeeCCCcEEEEEecCCcceeEEEecccceeeeEEEEcCCCcEEEeec
Q psy18231 467 CLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC 523 (540)
Q Consensus 467 ~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~ 523 (540)
+|+|-...||||+.||.|.+||+.+.+.+..+. .-...|.+++|+.||..||.++
T Consensus 239 ~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~--~~~~SI~slsfs~dG~~LAia~ 293 (323)
T KOG1036|consen 239 AFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLA--KYETSISSLSFSMDGSLLAIAS 293 (323)
T ss_pred EeccccceEEecCCCceEEEccCcchhhhhhcc--CCCCceEEEEeccCCCeEEEEe
Confidence 899998999999999999999999999999997 5667899999999999999886
|
|
| >KOG1408|consensus | Back alignment and domain information |
|---|
Probab=99.98 E-value=6.2e-31 Score=244.25 Aligned_cols=319 Identities=18% Similarity=0.254 Sum_probs=255.5
Q ss_pred cCCcceeccccchhhhhhcccccceeeeecccccce------eeeeecCeEEEEeCCC-----------CCEEEEeeCCC
Q psy18231 124 RTHPLLFSLPRTITRILYELPKEWSIRVYRPLTVNR------ELFVLSGLMHTRFPVD-----------GSYCLTCGSDK 186 (540)
Q Consensus 124 ~~~~~~~s~~~~~~~~~~~~~~~~~i~~~~~~~~~~------~~~h~~~v~~v~~spd-----------g~~lat~~~dg 186 (540)
+...+.|++.. ..+..+-.+..+.+|+....++ .+.|...|..+.--|. ..-+.|++.|+
T Consensus 326 D~IA~~Fdet~---~klscVYndhSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~ 402 (1080)
T KOG1408|consen 326 DAIACQFDETT---DKLSCVYNDHSLYVWDVRDVNKVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDG 402 (1080)
T ss_pred ceeEEEecCCC---ceEEEEEcCceEEEEeccccccccceeeeeeccceeeeeccccccccCcccccCCccceeEecCCC
Confidence 34445555543 3444567788999999877653 3568888888876551 12477999999
Q ss_pred cEEEEcCCCCe---eE----------------------------------EEeecCCcceeEEEEeeCCCeEEEeeCCCe
Q psy18231 187 KIKLWNPYRNL---LL----------------------------------KTYGGHAHEVNDATAACDSSQIASGASDKS 229 (540)
Q Consensus 187 ~i~iwd~~~~~---~~----------------------------------~~~~~h~~~v~~l~~sp~~~~l~s~s~dg~ 229 (540)
+|++||++.+. .. ...-+.+..+.+++.+|+|++||+|..-|+
T Consensus 403 TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~Gn 482 (1080)
T KOG1408|consen 403 TIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGN 482 (1080)
T ss_pred cEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcceecccCccCc
Confidence 99999987521 10 001123457899999999999999999999
Q ss_pred EEEEEcCCCceeEeccccCCceeEEEECC---CCCEEEEecCCCcEEEEEecCCCCCCcchhhhhHhhhhcCCceeEEEE
Q psy18231 230 VILWEVTTGQPVRRWREHASKVTCVKFNE---DSSVVISGSQDNTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHS 306 (540)
Q Consensus 230 i~iwd~~~~~~~~~~~~h~~~v~~~~~~~---~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (540)
++|||+.+-+....+..|.+.|.|+.|+. ..++|++++.|+-|.|||+...-.
T Consensus 483 lrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~------------------------ 538 (1080)
T KOG1408|consen 483 LRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYD------------------------ 538 (1080)
T ss_pred eEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccc------------------------
Confidence 99999999998888999999999999986 347899999999999999865431
Q ss_pred eecccccccccCceeeEEEeeeecccccceeeeeeccceeEEEeecccceecccccccccccchhhhhhcccccEEEEEe
Q psy18231 307 LVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEARDSITSVHV 386 (540)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~ 386 (540)
.++++.+|...|+++.|
T Consensus 539 ---------------------------------------------------------------l~qtld~HSssITsvKF 555 (1080)
T KOG1408|consen 539 ---------------------------------------------------------------LVQTLDGHSSSITSVKF 555 (1080)
T ss_pred ---------------------------------------------------------------hhhhhcccccceeEEEE
Confidence 34588999999999999
Q ss_pred cC----CeeEeeeCCCeEEEEeCCC---CceE----EeeeCCceEEEEEecCCcEEEeecCCCeEEEEeccccchhhhhc
Q psy18231 387 SD----HEILTASLDCRIRRYDIRT---GNLV----TDYVGEPIVDACFTRDCQCILTCSTDECLRLFDKATGELLEEYK 455 (540)
Q Consensus 387 ~~----~~l~~~~~dg~i~iwd~~~---~~~~----~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~ 455 (540)
-. ..+++++.|..|.+--.+. +... .++....++.++..|..+++++++.|..|+|||+.+++..+.|+
T Consensus 556 a~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FK 635 (1080)
T KOG1408|consen 556 ACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFK 635 (1080)
T ss_pred eecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccceEEEeccccceeeeec
Confidence 65 5688999998876432221 2211 12223579999999999999999999999999999999999998
Q ss_pred cCcCC-cceEEEEecCCCCeEEEeeCCCcEEEEEecCCcceeEEEecccceeeeEEEEcCCCcEEEeec-CCeeEEEEcc
Q psy18231 456 GHKSG-DFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC-GNNVKLWTAE 533 (540)
Q Consensus 456 ~~~~~-v~~~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~-d~~i~iw~~~ 533 (540)
+..+. -.-+.+...|.|-|||+...|.++.++|..+++++.++. +|...|+.+.|++|.+.|++.+ ||.|.||.+.
T Consensus 636 gs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~--GHsE~VTG~kF~nDCkHlISvsgDgCIFvW~lp 713 (1080)
T KOG1408|consen 636 GSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMT--GHSEAVTGVKFLNDCKHLISVSGDGCIFVWKLP 713 (1080)
T ss_pred ccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhhc--CcchheeeeeecccchhheeecCCceEEEEECc
Confidence 64432 334555789999999999999999999999999999999 9999999999999999999999 9999999986
Q ss_pred c
Q psy18231 534 E 534 (540)
Q Consensus 534 ~ 534 (540)
-
T Consensus 714 ~ 714 (1080)
T KOG1408|consen 714 L 714 (1080)
T ss_pred h
Confidence 4
|
|
| >KOG0772|consensus | Back alignment and domain information |
|---|
Probab=99.98 E-value=7.8e-31 Score=234.87 Aligned_cols=288 Identities=18% Similarity=0.259 Sum_probs=227.5
Q ss_pred eeeeecCeEEEEeCCCCCEEEEeeCCCcEEEEcCCCCe----eEEEe-ecCCcceeEEEEeeCCCeEEEeeCCCeEEEEE
Q psy18231 160 ELFVLSGLMHTRFPVDGSYCLTCGSDKKIKLWNPYRNL----LLKTY-GGHAHEVNDATAACDSSQIASGASDKSVILWE 234 (540)
Q Consensus 160 ~~~h~~~v~~v~~spdg~~lat~~~dg~i~iwd~~~~~----~~~~~-~~h~~~v~~l~~sp~~~~l~s~s~dg~i~iwd 234 (540)
...|+..|+++++.|.|.+|++|+.|.+|++||+.... -.+.+ ......|.+++|++.|..|++.+.....+|+|
T Consensus 163 l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqakl~D 242 (641)
T KOG0772|consen 163 LKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQAKLLD 242 (641)
T ss_pred ccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcceeEEc
Confidence 34588899999999999999999999999999986432 12222 23456899999999999999999999999999
Q ss_pred cCCCceeE------------eccccCCceeEEEECCC-CCEEEEecCCCcEEEEEecCCCCCCcchhhhhHhhhhcCCce
Q psy18231 235 VTTGQPVR------------RWREHASKVTCVKFNED-SSVVISGSQDNTVMMWDVKSRSHHPIQVRCLNEALKEARDSI 301 (540)
Q Consensus 235 ~~~~~~~~------------~~~~h~~~v~~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (540)
-...+... ..++|...++|.+|+|+ ...++|++.||++++||+...+......
T Consensus 243 RdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVi-------------- 308 (641)
T KOG0772|consen 243 RDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVI-------------- 308 (641)
T ss_pred cCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEE--------------
Confidence 64332222 23589999999999995 4689999999999999998765211000
Q ss_pred eEEEEeecccccccccCceeeEEEeeeecccccceeeeeeccceeEEEeecccceecccccccccccchhhhhhcccccE
Q psy18231 302 TSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEARDSI 381 (540)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 381 (540)
..+...+..-.+
T Consensus 309 --------------------------------------------------------------------k~k~~~g~Rv~~ 320 (641)
T KOG0772|consen 309 --------------------------------------------------------------------KTKPAGGKRVPV 320 (641)
T ss_pred --------------------------------------------------------------------eeccCCCcccCc
Confidence 000112334577
Q ss_pred EEEEecC--CeeEeeeCCCeEEEEeCCCCce-----EEeee--CCceEEEEEecCCcEEEeecCCCeEEEEecccc-chh
Q psy18231 382 TSVHVSD--HEILTASLDCRIRRYDIRTGNL-----VTDYV--GEPIVDACFTRDCQCILTCSTDECLRLFDKATG-ELL 451 (540)
Q Consensus 382 ~~l~~~~--~~l~~~~~dg~i~iwd~~~~~~-----~~~~~--~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~-~~~ 451 (540)
+..+|++ .++++|+.||+|.+|+..+... +...+ +..|+|+.||+||++|++-+.|+++++||++.. +++
T Consensus 321 tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL 400 (641)
T KOG0772|consen 321 TSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKPL 400 (641)
T ss_pred eeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeeccccccch
Confidence 8899998 8899999999999999864432 22223 248999999999999999999999999999875 567
Q ss_pred hhhccCcCCcceEEEEecCCCCeEEEee------CCCcEEEEEecCCcceeEEEecccceeeeEEEEcCCCcEEEeec-C
Q psy18231 452 EEYKGHKSGDFRIECCLDSKDSQIFCGS------SDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC-G 524 (540)
Q Consensus 452 ~~~~~~~~~v~~~~~~~s~~~~~l~s~s------~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~-d 524 (540)
.+..+-...--...++|||+.++|++|+ ..|++++||..+...+..+. -....|..+.|+|.-+.|.+++ |
T Consensus 401 ~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~--i~~aSvv~~~WhpkLNQi~~gsgd 478 (641)
T KOG0772|consen 401 NVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKID--ISTASVVRCLWHPKLNQIFAGSGD 478 (641)
T ss_pred hhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEec--CCCceEEEEeecchhhheeeecCC
Confidence 7777666655556779999999999986 45789999999989888887 5578899999999988888888 9
Q ss_pred CeeEEEE
Q psy18231 525 NNVKLWT 531 (540)
Q Consensus 525 ~~i~iw~ 531 (540)
|++++|=
T Consensus 479 G~~~vyY 485 (641)
T KOG0772|consen 479 GTAHVYY 485 (641)
T ss_pred CceEEEE
Confidence 9998863
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3e-29 Score=242.88 Aligned_cols=244 Identities=17% Similarity=0.202 Sum_probs=189.9
Q ss_pred eeCCCcEEEEcCCCCeeEEEeecCCcceeEEEEeeC-CCeEEEeeCCCeEEEEEcCCCc--------eeEeccccCCcee
Q psy18231 182 CGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACD-SSQIASGASDKSVILWEVTTGQ--------PVRRWREHASKVT 252 (540)
Q Consensus 182 ~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~-~~~l~s~s~dg~i~iwd~~~~~--------~~~~~~~h~~~v~ 252 (540)
|+.++.|++|+..+...+..+.+|.+.|.+++|+|+ +.+|++|+.|++|+|||+.++. ++..+.+|...|.
T Consensus 50 GG~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~ 129 (568)
T PTZ00420 50 GGLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKIS 129 (568)
T ss_pred CCceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEE
Confidence 667899999998888888999999999999999996 7899999999999999997642 3446788999999
Q ss_pred EEEECCCCCE-EEEecCCCcEEEEEecCCCCCCcchhhhhHhhhhcCCceeEEEEeecccccccccCceeeEEEeeeecc
Q psy18231 253 CVKFNEDSSV-VISGSQDNTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKY 331 (540)
Q Consensus 253 ~~~~~~~~~~-l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (540)
+++|+|++.. |++++.|++|++||+++++. ..
T Consensus 130 sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~--~~--------------------------------------------- 162 (568)
T PTZ00420 130 IIDWNPMNYYIMCSSGFDSFVNIWDIENEKR--AF--------------------------------------------- 162 (568)
T ss_pred EEEECCCCCeEEEEEeCCCeEEEEECCCCcE--EE---------------------------------------------
Confidence 9999998865 57899999999999987651 00
Q ss_pred cccceeeeeeccceeEEEeecccceecccccccccccchhhhhhcccccEEEEEecC--CeeEeeeCCCeEEEEeCCCCc
Q psy18231 332 LNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEARDSITSVHVSD--HEILTASLDCRIRRYDIRTGN 409 (540)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~--~~l~~~~~dg~i~iwd~~~~~ 409 (540)
.+ .|...|.+++|++ .+|++++.|+.|++||+++++
T Consensus 163 -----------------------------------------~i-~~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~ 200 (568)
T PTZ00420 163 -----------------------------------------QI-NMPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQE 200 (568)
T ss_pred -----------------------------------------EE-ecCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCc
Confidence 11 1346789999998 788888999999999999999
Q ss_pred eEEeeeCC--ce-----EEEEEecCCcEEEeecCCC----eEEEEeccc-cchhhhhccCcCCcceEEEEe-cCCCCeEE
Q psy18231 410 LVTDYVGE--PI-----VDACFTRDCQCILTCSTDE----CLRLFDKAT-GELLEEYKGHKSGDFRIECCL-DSKDSQIF 476 (540)
Q Consensus 410 ~~~~~~~~--~i-----~~~~~sp~~~~l~~~~~dg----~i~i~d~~~-~~~~~~~~~~~~~v~~~~~~~-s~~~~~l~ 476 (540)
.+..+.+| .+ ....|++++++|++++.|+ +|+|||+++ .+++..+..+. ....+...+ .++|.+++
T Consensus 201 ~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~-~~~~L~p~~D~~tg~l~l 279 (568)
T PTZ00420 201 IASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDN-ASAPLIPHYDESTGLIYL 279 (568)
T ss_pred EEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecC-CccceEEeeeCCCCCEEE
Confidence 98888754 22 2234568999999877764 799999985 45555443332 222222233 45588899
Q ss_pred EeeCCCcEEEEEecCCcceeEEEecccceeeeEEEEcCCC
Q psy18231 477 CGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTR 516 (540)
Q Consensus 477 s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~ 516 (540)
+|+.|++|++|++..+. +..+....+..++.+++|.|+.
T Consensus 280 sGkGD~tIr~~e~~~~~-~~~l~~~~s~~p~~g~~f~Pkr 318 (568)
T PTZ00420 280 IGKGDGNCRYYQHSLGS-IRKVNEYKSCSPFRSFGFLPKQ 318 (568)
T ss_pred EEECCCeEEEEEccCCc-EEeecccccCCCccceEEcccc
Confidence 99999999999997764 3444433466788999999975
|
|
| >KOG0643|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.7e-30 Score=213.92 Aligned_cols=264 Identities=17% Similarity=0.252 Sum_probs=224.9
Q ss_pred hhhhcccccceeeeeccccccee---eeeecCeEEEEeCCCCCEEEEeeCCCcEEEEcCCCCeeEEEeecCCcceeEEEE
Q psy18231 138 RILYELPKEWSIRVYRPLTVNRE---LFVLSGLMHTRFPVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATA 214 (540)
Q Consensus 138 ~~~~~~~~~~~i~~~~~~~~~~~---~~h~~~v~~v~~spdg~~lat~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~ 214 (540)
.+++++++|.+..+|-...+++. .+|+++|.|+..+-+.++|++|+.|.++++||+++|+++..++ ...+|..+.|
T Consensus 23 DLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~la~~k-~~~~Vk~~~F 101 (327)
T KOG0643|consen 23 DLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQLATWK-TNSPVKRVDF 101 (327)
T ss_pred cEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCCcEEEEee-cCCeeEEEee
Confidence 45678889999999998887754 6799999999999999999999999999999999999999998 5789999999
Q ss_pred eeCCCeEEEeeCC-----CeEEEEEcC-------CCceeEeccccCCceeEEEECCCCCEEEEecCCCcEEEEEecCCCC
Q psy18231 215 ACDSSQIASGASD-----KSVILWEVT-------TGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSH 282 (540)
Q Consensus 215 sp~~~~l~s~s~d-----g~i~iwd~~-------~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~ 282 (540)
+++|++++....+ +.|.++|++ +.++...+..+.+.++.+-|.|-+++|++|.+||.|..||+++++.
T Consensus 102 ~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~ 181 (327)
T KOG0643|consen 102 SFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETIIAGHEDGSISIYDARTGKE 181 (327)
T ss_pred ccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEEEEecCCCcEEEEEcccCce
Confidence 9999988776543 689999998 4456777888899999999999999999999999999999998762
Q ss_pred CCcchhhhhHhhhhcCCceeEEEEeecccccccccCceeeEEEeeeecccccceeeeeeccceeEEEeecccceeccccc
Q psy18231 283 HPIQVRCLNEALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVT 362 (540)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (540)
T Consensus 182 -------------------------------------------------------------------------------- 181 (327)
T KOG0643|consen 182 -------------------------------------------------------------------------------- 181 (327)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccchhhhhhcccccEEEEEecC--CeeEeeeCCCeEEEEeCCCCceEEeeeC-CceEEEEEecCCcEEEeecCCCe
Q psy18231 363 PISIHNSCFQALKEARDSITSVHVSD--HEILTASLDCRIRRYDIRTGNLVTDYVG-EPIVDACFTRDCQCILTCSTDEC 439 (540)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~v~~l~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~i~~~~~sp~~~~l~~~~~dg~ 439 (540)
.+.....|...|+.+.+++ .++++++.|.+-++||..+-++++++.. .++++.+++|....++.|+....
T Consensus 182 -------~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~te~PvN~aaisP~~d~VilgGGqeA 254 (327)
T KOG0643|consen 182 -------LVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYTTERPVNTAAISPLLDHVILGGGQEA 254 (327)
T ss_pred -------eeechhhhccccccccccCCcceEEecccCccceeeeccceeeEEEeeecccccceecccccceEEecCCcee
Confidence 1224457888999999999 8999999999999999999999999975 79999999998777777664322
Q ss_pred --E------------EEEeccccchhhhhccCcCCcceEEEEecCCCCeEEEeeCCCcEEEEEecC
Q psy18231 440 --L------------RLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVD 491 (540)
Q Consensus 440 --i------------~i~d~~~~~~~~~~~~~~~~v~~~~~~~s~~~~~l~s~s~dg~i~iwd~~~ 491 (540)
| +.|++-..+.+..+++|-++|+.+ +|+|+|+..++|++||.|++.-...
T Consensus 255 ~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsv--AfhPdGksYsSGGEDG~VR~h~Fd~ 318 (327)
T KOG0643|consen 255 MDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSV--AFHPDGKSYSSGGEDGYVRLHHFDS 318 (327)
T ss_pred eeeeeecccccchhhhHHHHHHHHHhccccccccCccee--EECCCCcccccCCCCceEEEEEecc
Confidence 1 223333334567789999999999 8999999999999999999986543
|
|
| >KOG0283|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.9e-31 Score=249.45 Aligned_cols=245 Identities=17% Similarity=0.303 Sum_probs=198.3
Q ss_pred eEEEee-cCCcceeEEEEeeCCCeEEEeeCCCeEEEEEcCC--------------------------------C------
Q psy18231 198 LLKTYG-GHAHEVNDATAACDSSQIASGASDKSVILWEVTT--------------------------------G------ 238 (540)
Q Consensus 198 ~~~~~~-~h~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~--------------------------------~------ 238 (540)
....+. .|.+.|+++.||+||+|||+|+.|+.|+||.+.. .
T Consensus 258 ~~Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s 337 (712)
T KOG0283|consen 258 VVQEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTS 337 (712)
T ss_pred EeeccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccccc
Confidence 344455 8999999999999999999999999999998755 0
Q ss_pred ----------------------ceeEeccccCCceeEEEECCCCCEEEEecCCCcEEEEEecCCCCCCcchhhhhHhhhh
Q psy18231 239 ----------------------QPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQVRCLNEALKE 296 (540)
Q Consensus 239 ----------------------~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 296 (540)
+++..+.+|.+.|..+.|+.+ ++|+++|.|++|++|++...++
T Consensus 338 ~~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn-~fLLSSSMDKTVRLWh~~~~~C-------------- 402 (712)
T KOG0283|consen 338 SSRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKN-NFLLSSSMDKTVRLWHPGRKEC-------------- 402 (712)
T ss_pred ccccccCCccccCCCccccccccchhhhhccchhheecccccC-CeeEeccccccEEeecCCCcce--------------
Confidence 134456689999999999975 5899999999999999987652
Q ss_pred cCCceeEEEEeecccccccccCceeeEEEeeeecccccceeeeeeccceeEEEeecccceecccccccccccchhhhhhc
Q psy18231 297 ARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKE 376 (540)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (540)
+ ..-.
T Consensus 403 --------------------------------------------------------------------------L-~~F~ 407 (712)
T KOG0283|consen 403 --------------------------------------------------------------------------L-KVFS 407 (712)
T ss_pred --------------------------------------------------------------------------e-eEEe
Confidence 1 2336
Q ss_pred ccccEEEEEecC---CeeEeeeCCCeEEEEeCCCCceEEeee-CCceEEEEEecCCcEEEeecCCCeEEEEeccccchhh
Q psy18231 377 ARDSITSVHVSD---HEILTASLDCRIRRYDIRTGNLVTDYV-GEPIVDACFTRDCQCILTCSTDECLRLFDKATGELLE 452 (540)
Q Consensus 377 ~~~~v~~l~~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~ 452 (540)
|.+-|+|++|+| +++++|+-||++|||++...+.+.-.. ..-|++++|.|||++.++|+.+|..++|+....+...
T Consensus 408 HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~ 487 (712)
T KOG0283|consen 408 HNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVVDWNDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVS 487 (712)
T ss_pred cCCeeEEEEecccCCCcEeecccccceEEeecCcCeeEeehhhhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEE
Confidence 999999999999 999999999999999999877765444 2679999999999999999999999999988766543
Q ss_pred hhccC--------cCCcceEEEEecCC-CCeEEEeeCCCcEEEEEecCCcceeEEEecccceeeeEEEEcCCCcEEEeec
Q psy18231 453 EYKGH--------KSGDFRIECCLDSK-DSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC 523 (540)
Q Consensus 453 ~~~~~--------~~~v~~~~~~~s~~-~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~ 523 (540)
.+..+ ...|+.+. |.|. ...+++.+.|..|||||.++..++..++.......=....|+.||++|++++
T Consensus 488 ~~~I~~~~~Kk~~~~rITG~Q--~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~s 565 (712)
T KOG0283|consen 488 DFHIRLHNKKKKQGKRITGLQ--FFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSAS 565 (712)
T ss_pred eeeEeeccCccccCceeeeeE--ecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEee
Confidence 33211 12688885 4432 2357778899999999999999988888322223345678999999999999
Q ss_pred -CCeeEEEEccc
Q psy18231 524 -GNNVKLWTAEE 534 (540)
Q Consensus 524 -d~~i~iw~~~~ 534 (540)
|..|++|+.+.
T Consensus 566 eDs~VYiW~~~~ 577 (712)
T KOG0283|consen 566 EDSWVYIWKNDS 577 (712)
T ss_pred cCceEEEEeCCC
Confidence 99999999854
|
|
| >KOG0308|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.4e-31 Score=242.98 Aligned_cols=285 Identities=23% Similarity=0.416 Sum_probs=234.9
Q ss_pred EEEeC-CCCCEEEEeeCCCcEEEEcCCCCe------eEEEeecCCcceeEEEEeeCCCeEEEeeCCCeEEEEEcCCC--c
Q psy18231 169 HTRFP-VDGSYCLTCGSDKKIKLWNPYRNL------LLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTG--Q 239 (540)
Q Consensus 169 ~v~~s-pdg~~lat~~~dg~i~iwd~~~~~------~~~~~~~h~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~--~ 239 (540)
.+..+ |.++||+|||+||.|++|+..... .+.+++.|...|..++...+++.|+++|.|-+|++|+...+ -
T Consensus 29 ~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~ 108 (735)
T KOG0308|consen 29 ALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTF 108 (735)
T ss_pred hccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcch
Confidence 44444 467789999999999999976432 36778899999999999999999999999999999999887 5
Q ss_pred eeEeccccCCceeEEEE-CCCCCEEEEecCCCcEEEEEecCCCCCCcchhhhhHhhhhcCCceeEEEEeecccccccccC
Q psy18231 240 PVRRWREHASKVTCVKF-NEDSSVVISGSQDNTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHLSNG 318 (540)
Q Consensus 240 ~~~~~~~h~~~v~~~~~-~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (540)
++.++..|.+.|.|+++ .++..++++||-|+.|.+||+.++...... .
T Consensus 109 c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~----------s--------------------- 157 (735)
T KOG0308|consen 109 CMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVA----------S--------------------- 157 (735)
T ss_pred hHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhh----------h---------------------
Confidence 77889999999999999 778889999999999999999987520000 0
Q ss_pred ceeeEEEeeeecccccceeeeeeccceeEEEeecccceecccccccccccchhhhhh-cccccEEEEEecC--CeeEeee
Q psy18231 319 LLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALK-EARDSITSVHVSD--HEILTAS 395 (540)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~l~~~~--~~l~~~~ 395 (540)
........+. ++..+|++++.++ ..+++|+
T Consensus 158 -----------------------------------------------~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGg 190 (735)
T KOG0308|consen 158 -----------------------------------------------FNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGG 190 (735)
T ss_pred -----------------------------------------------ccccccccCCCCCccceeeeecCCcceEEEecC
Confidence 0000011222 7889999999999 4889999
Q ss_pred CCCeEEEEeCCCCceEEeeeCC--ceEEEEEecCCcEEEeecCCCeEEEEeccccchhhhhccCcCCcceEEEEecCCCC
Q psy18231 396 LDCRIRRYDIRTGNLVTDYVGE--PIVDACFTRDCQCILTCSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDS 473 (540)
Q Consensus 396 ~dg~i~iwd~~~~~~~~~~~~~--~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~s~~~~ 473 (540)
..+.|++||.++++.+..+.+| .|..+..++||..+++++.||+|++||+...+++.++..|...++++ ..+|+=.
T Consensus 191 tek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~VWaL--~~~~sf~ 268 (735)
T KOG0308|consen 191 TEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKEGVWAL--QSSPSFT 268 (735)
T ss_pred cccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEeccCceEEE--eeCCCcc
Confidence 9999999999999999999885 79999999999999999999999999999999999999999999988 5668878
Q ss_pred eEEEeeCCCcEEEEEecCCcceeEEEecccceeeeEEEEcCCCcEEEeec-CCeeEEEEcccc
Q psy18231 474 QIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC-GNNVKLWTAEED 535 (540)
Q Consensus 474 ~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~-d~~i~iw~~~~~ 535 (540)
.+++|+.||.|+.=|+.+......+- ....+|..+..+.+.+-+-++. |+.|+-|..+..
T Consensus 269 ~vYsG~rd~~i~~Tdl~n~~~~tlic--k~daPv~~l~~~~~~~~~WvtTtds~I~rW~~~~~ 329 (735)
T KOG0308|consen 269 HVYSGGRDGNIYRTDLRNPAKSTLIC--KEDAPVLKLHLHEHDNSVWVTTTDSSIKRWKLEPD 329 (735)
T ss_pred eEEecCCCCcEEecccCCchhheEee--cCCCchhhhhhccccCCceeeeccccceecCCccc
Confidence 89999999999999999854433333 3556788888775555545555 999999987654
|
|
| >KOG0289|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=7e-30 Score=224.10 Aligned_cols=278 Identities=18% Similarity=0.240 Sum_probs=240.1
Q ss_pred cCeEEEEeCCCCCEEEEeeCCCcEEEEcCCCCeeEEEeecCCcceeEEEEeeCCCeEEEeeCCCeEEEEEcCCCceeEec
Q psy18231 165 SGLMHTRFPVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPVRRW 244 (540)
Q Consensus 165 ~~v~~v~~spdg~~lat~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~ 244 (540)
..+.++...|....+++|+.|..+.++|..+++.+..++||...|+.+.|+|+...+++++.|..|+||...........
T Consensus 220 pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~~ 299 (506)
T KOG0289|consen 220 PGITALDIIPSSSKILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTSS 299 (506)
T ss_pred CCeeEEeecCCCCcceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCcccc
Confidence 56888888888788999999999999999999999999999999999999999999999999999999999888888888
Q ss_pred cccCCceeEEEECCCCCEEEEecCCCcEEEEEecCCCCCCcchhhhhHhhhhcCCceeEEEEeecccccccccCceeeEE
Q psy18231 245 REHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHLSNGLLTKLV 324 (540)
Q Consensus 245 ~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (540)
..|..+|+.+..+|.|.||++++.||+..+.|++++......
T Consensus 300 ~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~v-------------------------------------- 341 (506)
T KOG0289|consen 300 RPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVV-------------------------------------- 341 (506)
T ss_pred ccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEE--------------------------------------
Confidence 899999999999999999999999999999999988731111
Q ss_pred EeeeecccccceeeeeeccceeEEEeecccceecccccccccccchhhhhhcccccEEEEEecC--CeeEeeeCCCeEEE
Q psy18231 325 FAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEARDSITSVHVSD--HEILTASLDCRIRR 402 (540)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~--~~l~~~~~dg~i~i 402 (540)
.-....-.+++.+|+| .+|.+|+.||.+++
T Consensus 342 ------------------------------------------------s~~~s~v~~ts~~fHpDgLifgtgt~d~~vki 373 (506)
T KOG0289|consen 342 ------------------------------------------------SDETSDVEYTSAAFHPDGLIFGTGTPDGVVKI 373 (506)
T ss_pred ------------------------------------------------eeccccceeEEeeEcCCceEEeccCCCceEEE
Confidence 0111234578999999 66778899999999
Q ss_pred EeCCCCceEEeeeC--CceEEEEEecCCcEEEeecCCCeEEEEeccccchhhhhccCcC-CcceEEEEecCCCCeEEEee
Q psy18231 403 YDIRTGNLVTDYVG--EPIVDACFTRDCQCILTCSTDECLRLFDKATGELLEEYKGHKS-GDFRIECCLDSKDSQIFCGS 479 (540)
Q Consensus 403 wd~~~~~~~~~~~~--~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~-~v~~~~~~~s~~~~~l~s~s 479 (540)
||+.++..+..+.+ .+|..++|+.+|-+|++++.|+.|++||++..+...++..... ++..+ .|.+.|.+|+.++
T Consensus 374 wdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~--~fD~SGt~L~~~g 451 (506)
T KOG0289|consen 374 WDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSL--SFDQSGTYLGIAG 451 (506)
T ss_pred EEcCCccccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccccccceeE--EEcCCCCeEEeec
Confidence 99999998888876 5899999999999999999999999999999888777765443 35555 8999999999998
Q ss_pred CCCcEEEEEec--CCcceeEEEecccceeeeEEEEcCCCcEEEeec-CCeeEEEEc
Q psy18231 480 SDGKIYKWQLV--DSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC-GNNVKLWTA 532 (540)
Q Consensus 480 ~dg~i~iwd~~--~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~-d~~i~iw~~ 532 (540)
.|=+|++++-. +..++..+. .|.+..+.+.|....+++++++ |..++++.+
T Consensus 452 ~~l~Vy~~~k~~k~W~~~~~~~--~~sg~st~v~Fg~~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 452 SDLQVYICKKKTKSWTEIKELA--DHSGLSTGVRFGEHAQYLASTSMDAILRLYAL 505 (506)
T ss_pred ceeEEEEEecccccceeeehhh--hcccccceeeecccceEEeeccchhheEEeec
Confidence 87666666633 456666676 7888999999999999999999 999998865
|
|
| >KOG0313|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.3e-30 Score=221.21 Aligned_cols=260 Identities=18% Similarity=0.315 Sum_probs=214.1
Q ss_pred hhhhhcccccceeeeecccccc--eeeeeecCeEEEEeCCC---CCEEEEeeCCCcEEEEcCCCCeeE----EEeecCCc
Q psy18231 137 TRILYELPKEWSIRVYRPLTVN--RELFVLSGLMHTRFPVD---GSYCLTCGSDKKIKLWNPYRNLLL----KTYGGHAH 207 (540)
Q Consensus 137 ~~~~~~~~~~~~i~~~~~~~~~--~~~~h~~~v~~v~~spd---g~~lat~~~dg~i~iwd~~~~~~~----~~~~~h~~ 207 (540)
...+.+++.++++|+|+..... ...+|.++|.+++|--. ...+++++.|.++++|.++.++.. ..-+||..
T Consensus 115 ~~~IltgsYDg~~riWd~~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~ 194 (423)
T KOG0313|consen 115 SKWILTGSYDGTSRIWDLKGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKR 194 (423)
T ss_pred CceEEEeecCCeeEEEecCCceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhHHhHhccccc
Confidence 4455678999999999987643 55789999998887432 335999999999999998876432 23359999
Q ss_pred ceeEEEEeeCCCeEEEeeCCCeEEEEEcCC-------------------------CceeEeccccCCceeEEEECCCCCE
Q psy18231 208 EVNDATAACDSSQIASGASDKSVILWEVTT-------------------------GQPVRRWREHASKVTCVKFNEDSSV 262 (540)
Q Consensus 208 ~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~-------------------------~~~~~~~~~h~~~v~~~~~~~~~~~ 262 (540)
.|.+++..++|..+++|+.|.+|+||+..+ +.++..+.+|..+|.++.|++ ...
T Consensus 195 ~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d-~~v 273 (423)
T KOG0313|consen 195 SVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD-ATV 273 (423)
T ss_pred ceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC-CCc
Confidence 999999999999999999999999999321 235667889999999999997 678
Q ss_pred EEEecCCCcEEEEEecCCCCCCcchhhhhHhhhhcCCceeEEEEeecccccccccCceeeEEEeeeecccccceeeeeec
Q psy18231 263 VISGSQDNTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMS 342 (540)
Q Consensus 263 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (540)
+++++.|.+|+.||+.++.....
T Consensus 274 ~yS~SwDHTIk~WDletg~~~~~--------------------------------------------------------- 296 (423)
T KOG0313|consen 274 IYSVSWDHTIKVWDLETGGLKST--------------------------------------------------------- 296 (423)
T ss_pred eEeecccceEEEEEeecccceee---------------------------------------------------------
Confidence 99999999999999999873111
Q ss_pred cceeEEEeecccceecccccccccccchhhhhhcccccEEEEEecC--CeeEeeeCCCeEEEEeCCCCc---eEEeeeC-
Q psy18231 343 TQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEARDSITSVHVSD--HEILTASLDCRIRRYDIRTGN---LVTDYVG- 416 (540)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~--~~l~~~~~dg~i~iwd~~~~~---~~~~~~~- 416 (540)
......+.++..+| ++|++|+.|..|++||.+++. ..+++.+
T Consensus 297 --------------------------------~~~~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH 344 (423)
T KOG0313|consen 297 --------------------------------LTTNKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGH 344 (423)
T ss_pred --------------------------------eecCcceeEeecccccceeeecCCCCceeecCCCCCCCceeEEeeecc
Confidence 12245678899988 899999999999999999774 3455555
Q ss_pred -CceEEEEEecC-CcEEEeecCCCeEEEEeccccc-hhhhhccCcCCcceEEEEecCCCCeEEEeeCCCcEEEEEe
Q psy18231 417 -EPIVDACFTRD-CQCILTCSTDECLRLFDKATGE-LLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQL 489 (540)
Q Consensus 417 -~~i~~~~~sp~-~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~v~~~~~~~s~~~~~l~s~s~dg~i~iwd~ 489 (540)
..|.++.|+|. ...|++++.|+++++||+++.+ ++..+.+|...|.++ .|. ++.+|++|+.|++|+|+.-
T Consensus 345 ~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~v--dW~-~~~~IvSGGaD~~l~i~~~ 417 (423)
T KOG0313|consen 345 KNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSV--DWN-EGGLIVSGGADNKLRIFKG 417 (423)
T ss_pred hhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEE--ecc-CCceEEeccCcceEEEecc
Confidence 47999999995 4568899999999999999887 999999999998887 554 5679999999999999873
|
|
| >KOG0294|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.6e-29 Score=213.10 Aligned_cols=259 Identities=18% Similarity=0.269 Sum_probs=214.0
Q ss_pred ceeeeeecCeEEEEeCCCCCEEEEeeCCCcEEEEcCCCCeeEEEeecCCcceeEEEEeeCCC--eEEEeeCCCeEEEEEc
Q psy18231 158 NRELFVLSGLMHTRFPVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSS--QIASGASDKSVILWEV 235 (540)
Q Consensus 158 ~~~~~h~~~v~~v~~spdg~~lat~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~--~l~s~s~dg~i~iwd~ 235 (540)
.....|.++|++++. ++.++|+||.|-+|+|||..+...+..+-.|.+.|+++.|.++-. .|++|+.||.|.+|+.
T Consensus 37 F~~~aH~~sitavAV--s~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~ 114 (362)
T KOG0294|consen 37 FAFSAHAGSITALAV--SGPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRV 114 (362)
T ss_pred ccccccccceeEEEe--cceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCcEEEEEc
Confidence 344569999999998 488999999999999999999999999999999999999999765 8999999999999999
Q ss_pred CCCceeEeccccCCceeEEEECCCCCEEEEecCCCcEEEEEecCCCCCCcchhhhhHhhhhcCCceeEEEEeeccccccc
Q psy18231 236 TTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHL 315 (540)
Q Consensus 236 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (540)
...+++..+++|.+.|+.++.+|.+++.++.+.|+.++.||+-.++..-..
T Consensus 115 ~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~----------------------------- 165 (362)
T KOG0294|consen 115 GSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVL----------------------------- 165 (362)
T ss_pred CCeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccceee-----------------------------
Confidence 999999999999999999999999999999999999999999888731111
Q ss_pred ccCceeeEEEeeeecccccceeeeeeccceeEEEeecccceecccccccccccchhhhhhcccccEEEEEecC--CeeEe
Q psy18231 316 SNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEARDSITSVHVSD--HEILT 393 (540)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~--~~l~~ 393 (540)
.+ ....+.+.|+| .+++.
T Consensus 166 ---------------------------------------------------------~L---~~~at~v~w~~~Gd~F~v 185 (362)
T KOG0294|consen 166 ---------------------------------------------------------NL---KNKATLVSWSPQGDHFVV 185 (362)
T ss_pred ---------------------------------------------------------cc---CCcceeeEEcCCCCEEEE
Confidence 11 11223378888 66666
Q ss_pred eeCCCeEEEEeCCCCceEEeeeC-CceEEEEEecCCcEEEeecCCCeEEEEeccccchhhhhccCcCCcceEEEEecCCC
Q psy18231 394 ASLDCRIRRYDIRTGNLVTDYVG-EPIVDACFTRDCQCILTCSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKD 472 (540)
Q Consensus 394 ~~~dg~i~iwd~~~~~~~~~~~~-~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~s~~~ 472 (540)
+..+ .|-+|.+++......+.. ..+.++.|. ++..|++|..|+.|.+||..+..+...+.+|..+|-.+..--.|++
T Consensus 186 ~~~~-~i~i~q~d~A~v~~~i~~~~r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~ 263 (362)
T KOG0294|consen 186 SGRN-KIDIYQLDNASVFREIENPKRILCATFL-DGSELLVGGDNEWISLKDTDSDTPLTEFLAHENRVKDIASYTNPEH 263 (362)
T ss_pred Eecc-EEEEEecccHhHhhhhhccccceeeeec-CCceEEEecCCceEEEeccCCCccceeeecchhheeeeEEEecCCc
Confidence 6654 589999998877666654 356666665 5678999999999999999999999999999999999865567888
Q ss_pred CeEEEeeCCCcEEEEEecCC-----cceeEEEecccceeeeEEEE
Q psy18231 473 SQIFCGSSDGKIYKWQLVDS-----SQISTLIHSVGKAVVNSLCS 512 (540)
Q Consensus 473 ~~l~s~s~dg~i~iwd~~~~-----~~~~~~~~~~~~~~v~~l~~ 512 (540)
.+|+++|.||.|+|||+... +++..+. -+..++|+..
T Consensus 264 ~~lvTaSSDG~I~vWd~~~~~k~~~~~l~e~n---~~~RltCl~~ 305 (362)
T KOG0294|consen 264 EYLVTASSDGFIKVWDIDMETKKRPTLLAELN---TNVRLTCLRV 305 (362)
T ss_pred eEEEEeccCceEEEEEccccccCCcceeEEee---cCCccceeee
Confidence 99999999999999998765 3444443 3455666654
|
|
| >KOG1446|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.5e-29 Score=209.54 Aligned_cols=252 Identities=17% Similarity=0.218 Sum_probs=212.2
Q ss_pred CeeEEEeecCCcceeEEEEeeCCCeEEEeeCCCeEEEEEcCCCceeEeccccCCceeEEEECCCCCEEEEecC--CCcEE
Q psy18231 196 NLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQ--DNTVM 273 (540)
Q Consensus 196 ~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~--dg~i~ 273 (540)
.++.+.+....+.|+++.|+++|.+|++++.|.+++|||..+++.+.++..+.-.+..++|....+.++.++. |.+|+
T Consensus 4 ~~~ak~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIr 83 (311)
T KOG1446|consen 4 FRPAKVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIR 83 (311)
T ss_pred cccccccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceE
Confidence 3445566666889999999999999999999999999999999999999888889999999887777777776 88999
Q ss_pred EEEecCCCCCCcchhhhhHhhhhcCCceeEEEEeecccccccccCceeeEEEeeeecccccceeeeeeccceeEEEeecc
Q psy18231 274 MWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFL 353 (540)
Q Consensus 274 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (540)
..++.+.+
T Consensus 84 yLsl~dNk------------------------------------------------------------------------ 91 (311)
T KOG1446|consen 84 YLSLHDNK------------------------------------------------------------------------ 91 (311)
T ss_pred EEEeecCc------------------------------------------------------------------------
Confidence 99998876
Q ss_pred cceecccccccccccchhhhhhcccccEEEEEecC--CeeEeeeCCCeEEEEeCCCCceEEeeeCCceEEEEEecCCcEE
Q psy18231 354 GSTQIGDVTPISIHNSCFQALKEARDSITSVHVSD--HEILTASLDCRIRRYDIRTGNLVTDYVGEPIVDACFTRDCQCI 431 (540)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~i~~~~~sp~~~~l 431 (540)
.++.+.+|...|.+|+.+| +.+++++.|++|++||++..++...+.-..-..++|+|.|-++
T Consensus 92 ----------------ylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~pi~AfDp~GLif 155 (311)
T KOG1446|consen 92 ----------------YLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGRPIAAFDPEGLIF 155 (311)
T ss_pred ----------------eEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCCCcceeECCCCcEE
Confidence 3447889999999999999 8999999999999999998888877776666778999999999
Q ss_pred EeecCCCeEEEEecccc--chhhhhccC---cCCcceEEEEecCCCCeEEEeeCCCcEEEEEecCCcceeEEEecccce-
Q psy18231 432 LTCSTDECLRLFDKATG--ELLEEYKGH---KSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKA- 505 (540)
Q Consensus 432 ~~~~~dg~i~i~d~~~~--~~~~~~~~~---~~~v~~~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~- 505 (540)
|++...+.|++||++.. .+..++.-. ......+ .|||||++|+.++..+.+++.|.-+|..+.++.......
T Consensus 156 A~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l--~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~ 233 (311)
T KOG1446|consen 156 ALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDL--EFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGN 233 (311)
T ss_pred EEecCCCeEEEEEecccCCCCceeEccCCCCccceeee--EEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCC
Confidence 99999889999999864 233333322 3344455 899999999999999999999999999988887322222
Q ss_pred eeeEEEEcCCCcEEEeec-CCeeEEEEcccccC
Q psy18231 506 VVNSLCSHPTRKHIMSAC-GNNVKLWTAEEDYG 537 (540)
Q Consensus 506 ~v~~l~~s~d~~~l~s~~-d~~i~iw~~~~~~~ 537 (540)
---..+|+||++++++|+ ||+|.+|+++++..
T Consensus 234 ~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~ 266 (311)
T KOG1446|consen 234 LPLSATFTPDSKFVLSGSDDGTIHVWNLETGKK 266 (311)
T ss_pred cceeEEECCCCcEEEEecCCCcEEEEEcCCCcE
Confidence 225778999999999999 99999999987753
|
|
| >KOG0301|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.1e-29 Score=233.66 Aligned_cols=274 Identities=20% Similarity=0.340 Sum_probs=233.8
Q ss_pred eeeeeecCeEEEEeCCCCCEEEEeeCCCcEEEEcCCCCeeE--EEeecCCcceeE-EEEee-CCCeEEEeeCCCeEEEEE
Q psy18231 159 RELFVLSGLMHTRFPVDGSYCLTCGSDKKIKLWNPYRNLLL--KTYGGHAHEVND-ATAAC-DSSQIASGASDKSVILWE 234 (540)
Q Consensus 159 ~~~~h~~~v~~v~~spdg~~lat~~~dg~i~iwd~~~~~~~--~~~~~h~~~v~~-l~~sp-~~~~l~s~s~dg~i~iwd 234 (540)
...+|...|..+++.+.. .++++|+||++++|+-..++.+ ..+.+|.+-|.. +++.+ ++-.|++|+.|.+|.+|.
T Consensus 9 ~l~gH~~DVr~v~~~~~~-~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~ 87 (745)
T KOG0301|consen 9 ELEGHKSDVRAVAVTDGV-CIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFK 87 (745)
T ss_pred EeccCccchheeEecCCe-EEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccceEEEEe
Confidence 356799999998877655 7899999999999997555443 346778888877 88875 556799999999999999
Q ss_pred cCCCceeEeccccCCceeEEEECCCCCEEEEecCCCcEEEEEecCCCCCCcchhhhhHhhhhcCCceeEEEEeecccccc
Q psy18231 235 VTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNH 314 (540)
Q Consensus 235 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (540)
.....++.++++|.+.|.+++...++. +++||.|.++++|......
T Consensus 88 ~~~~~P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~~~l~--------------------------------- 133 (745)
T KOG0301|consen 88 LSQAEPLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRIGELV--------------------------------- 133 (745)
T ss_pred cCCCCchhhhhccccceeeeecCCcCc-eEecccccceEEecchhhh---------------------------------
Confidence 999999999999999999999888877 9999999999999875533
Q ss_pred cccCceeeEEEeeeecccccceeeeeeccceeEEEeecccceecccccccccccchhhhhhcccccEEEEEecC-CeeEe
Q psy18231 315 LSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEARDSITSVHVSD-HEILT 393 (540)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~-~~l~~ 393 (540)
..+.+|+..|.+++.-| +.+++
T Consensus 134 ---------------------------------------------------------~~l~gH~asVWAv~~l~e~~~vT 156 (745)
T KOG0301|consen 134 ---------------------------------------------------------YSLQGHTASVWAVASLPENTYVT 156 (745)
T ss_pred ---------------------------------------------------------cccCCcchheeeeeecCCCcEEe
Confidence 25789999999999888 89999
Q ss_pred eeCCCeEEEEeCCCCceEEeeeCC--ceEEEEEecCCcEEEeecCCCeEEEEeccccchhhhhccCcCCcceEEEEecCC
Q psy18231 394 ASLDCRIRRYDIRTGNLVTDYVGE--PIVDACFTRDCQCILTCSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSK 471 (540)
Q Consensus 394 ~~~dg~i~iwd~~~~~~~~~~~~~--~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~s~~ 471 (540)
|+.|.+|++|.- ++.++++.+| -|+.+++-|++. +++++.||.|++|++ +++++.++.+|+.-++++ ....+
T Consensus 157 gsaDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~~~-flScsNDg~Ir~w~~-~ge~l~~~~ghtn~vYsi--s~~~~ 230 (745)
T KOG0301|consen 157 GSADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDDSH-FLSCSNDGSIRLWDL-DGEVLLEMHGHTNFVYSI--SMALS 230 (745)
T ss_pred ccCcceeeeccC--CchhhhhccchhheeeeEEecCCC-eEeecCCceEEEEec-cCceeeeeeccceEEEEE--EecCC
Confidence 999999999975 6777777764 699999988754 778999999999999 899999999999999998 56677
Q ss_pred CCeEEEeeCCCcEEEEEecCCcceeEEEecccceeeeEEEEcCCCcEEEeecCCeeEEEEccc
Q psy18231 472 DSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEE 534 (540)
Q Consensus 472 ~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~d~~i~iw~~~~ 534 (540)
+..++++++|++++||+.. ++.+.+. .....|.++.+-++|..++.++||.|+||..+.
T Consensus 231 ~~~Ivs~gEDrtlriW~~~--e~~q~I~--lPttsiWsa~~L~NgDIvvg~SDG~VrVfT~~k 289 (745)
T KOG0301|consen 231 DGLIVSTGEDRTLRIWKKD--ECVQVIT--LPTTSIWSAKVLLNGDIVVGGSDGRVRVFTVDK 289 (745)
T ss_pred CCeEEEecCCceEEEeecC--ceEEEEe--cCccceEEEEEeeCCCEEEeccCceEEEEEecc
Confidence 8899999999999999965 7777777 344579999999999977777799999998864
|
|
| >KOG0294|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.8e-29 Score=208.98 Aligned_cols=260 Identities=15% Similarity=0.284 Sum_probs=214.3
Q ss_pred EEEeeCCCcEEEEcCCC------------CeeEEEeecCCcceeEEEEeeCCCeEEEeeCCCeEEEEEcCCCceeEeccc
Q psy18231 179 CLTCGSDKKIKLWNPYR------------NLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPVRRWRE 246 (540)
Q Consensus 179 lat~~~dg~i~iwd~~~------------~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~ 246 (540)
|++|++...|.-+++.. ..++..+..|.+.|++++.+ +.++|+||.|-+|+|||+.....+..+-.
T Consensus 4 iIvGtYE~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~~qlg~ll~ 81 (362)
T KOG0294|consen 4 IIVGTYEHVILGFKLDPEPKGCTDSVKPTLKPLFAFSAHAGSITALAVS--GPYVASGSSDETIHIYDMRKRKQLGILLS 81 (362)
T ss_pred EEEeeeeeEEEEEEeccCccccccccceeeeccccccccccceeEEEec--ceeEeccCCCCcEEEEeccchhhhcceec
Confidence 56677666665555321 12356678899999999995 89999999999999999999999999999
Q ss_pred cCCceeEEEECCCCC--EEEEecCCCcEEEEEecCCCCCCcchhhhhHhhhhcCCceeEEEEeecccccccccCceeeEE
Q psy18231 247 HASKVTCVKFNEDSS--VVISGSQDNTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHLSNGLLTKLV 324 (540)
Q Consensus 247 h~~~v~~~~~~~~~~--~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (540)
|.+.|+++.|.+.-. .|++|+.||.|.+|+.....
T Consensus 82 HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~------------------------------------------- 118 (362)
T KOG0294|consen 82 HAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWE------------------------------------------- 118 (362)
T ss_pred cccceEEEEecCCcchhheeeecCCCcEEEEEcCCeE-------------------------------------------
Confidence 999999999998654 89999999999999987653
Q ss_pred EeeeecccccceeeeeeccceeEEEeecccceecccccccccccchhhhhhcccccEEEEEecC--CeeEeeeCCCeEEE
Q psy18231 325 FAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEARDSITSVHVSD--HEILTASLDCRIRR 402 (540)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~--~~l~~~~~dg~i~i 402 (540)
++..+++|.+.|+.++++| ++-++.+.|+.++.
T Consensus 119 ---------------------------------------------~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~ 153 (362)
T KOG0294|consen 119 ---------------------------------------------LLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRT 153 (362)
T ss_pred ---------------------------------------------EeeeecccccccceeEecCCCceEEEEcCCceeee
Confidence 3347889999999999999 66777899999999
Q ss_pred EeCCCCceEEeee-CCceEEEEEecCCcEEEeecCCCeEEEEeccccchhhhhccCcCCcceEEEEecCCCCeEEEeeCC
Q psy18231 403 YDIRTGNLVTDYV-GEPIVDACFTRDCQCILTCSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSD 481 (540)
Q Consensus 403 wd~~~~~~~~~~~-~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~s~~~~~l~s~s~d 481 (540)
||+-.|+.-..+. .+.-+.+.|+|.|.+++.+..+ .|-+|-+.+......+... ..+.++ .| -++..|++|+.|
T Consensus 154 WNLV~Gr~a~v~~L~~~at~v~w~~~Gd~F~v~~~~-~i~i~q~d~A~v~~~i~~~-~r~l~~--~~-l~~~~L~vG~d~ 228 (362)
T KOG0294|consen 154 WNLVRGRVAFVLNLKNKATLVSWSPQGDHFVVSGRN-KIDIYQLDNASVFREIENP-KRILCA--TF-LDGSELLVGGDN 228 (362)
T ss_pred ehhhcCccceeeccCCcceeeEEcCCCCEEEEEecc-EEEEEecccHhHhhhhhcc-ccceee--ee-cCCceEEEecCC
Confidence 9999988755554 3445569999999999888775 5899998887776666543 223333 23 467789999999
Q ss_pred CcEEEEEecCCcceeEEEecccceeeeEEEE--cCCCcEEEeec-CCeeEEEEcccc
Q psy18231 482 GKIYKWQLVDSSQISTLIHSVGKAVVNSLCS--HPTRKHIMSAC-GNNVKLWTAEED 535 (540)
Q Consensus 482 g~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~--s~d~~~l~s~~-d~~i~iw~~~~~ 535 (540)
+.|.+||..+..+...+. +|...|.++.+ .|++.+|+|++ ||.|++||++..
T Consensus 229 ~~i~~~D~ds~~~~~~~~--AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 229 EWISLKDTDSDTPLTEFL--AHENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDME 283 (362)
T ss_pred ceEEEeccCCCccceeee--cchhheeeeEEEecCCceEEEEeccCceEEEEEcccc
Confidence 999999998889999998 99999999985 57789999999 999999999865
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2e-28 Score=237.25 Aligned_cols=232 Identities=15% Similarity=0.210 Sum_probs=185.5
Q ss_pred eeCCCeEEEEEcCCCceeEeccccCCceeEEEECCC-CCEEEEecCCCcEEEEEecCCCCCCcchhhhhHhhhhcCCcee
Q psy18231 224 GASDKSVILWEVTTGQPVRRWREHASKVTCVKFNED-SSVVISGSQDNTVMMWDVKSRSHHPIQVRCLNEALKEARDSIT 302 (540)
Q Consensus 224 ~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (540)
|+.++.|++|+......+..+.+|.+.|.+++|+|+ +++|++|+.||+|++||+.+.......
T Consensus 50 GG~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~---------------- 113 (568)
T PTZ00420 50 GGLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKE---------------- 113 (568)
T ss_pred CCceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccc----------------
Confidence 667889999998888888889999999999999996 789999999999999999764310000
Q ss_pred EEEEeecccccccccCceeeEEEeeeecccccceeeeeeccceeEEEeecccceecccccccccccchhhhhhcccccEE
Q psy18231 303 SVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEARDSIT 382 (540)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 382 (540)
...++..+.+|...|.
T Consensus 114 ----------------------------------------------------------------i~~p~~~L~gH~~~V~ 129 (568)
T PTZ00420 114 ----------------------------------------------------------------IKDPQCILKGHKKKIS 129 (568)
T ss_pred ----------------------------------------------------------------cccceEEeecCCCcEE
Confidence 0001114567889999
Q ss_pred EEEecC--C-eeEeeeCCCeEEEEeCCCCceEEeee-CCceEEEEEecCCcEEEeecCCCeEEEEeccccchhhhhccCc
Q psy18231 383 SVHVSD--H-EILTASLDCRIRRYDIRTGNLVTDYV-GEPIVDACFTRDCQCILTCSTDECLRLFDKATGELLEEYKGHK 458 (540)
Q Consensus 383 ~l~~~~--~-~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~ 458 (540)
+++|+| . .+++++.|++|++||+++++.+..+. ...|.+++|+|+|++|++++.|+.|+|||+++++.+.++.+|.
T Consensus 130 sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~ 209 (568)
T PTZ00420 130 IIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQINMPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHIHD 209 (568)
T ss_pred EEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEecCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEeccc
Confidence 999999 3 46789999999999999998776664 3679999999999999999999999999999999999999998
Q ss_pred CCcceEEE---EecCCCCeEEEeeCCC----cEEEEEecC-CcceeEEEecccceeeeEEEEcCCCcEEEeec-CCeeEE
Q psy18231 459 SGDFRIEC---CLDSKDSQIFCGSSDG----KIYKWQLVD-SSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC-GNNVKL 529 (540)
Q Consensus 459 ~~v~~~~~---~~s~~~~~l~s~s~dg----~i~iwd~~~-~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~-d~~i~i 529 (540)
+.+....+ .|++++.+|++++.|+ +|++||+++ ++++..+....+.+.+......+++.++++|+ |++|++
T Consensus 210 g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr~ 289 (568)
T PTZ00420 210 GGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGNCRY 289 (568)
T ss_pred CCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECCCeEEE
Confidence 76544321 3568999999988774 799999985 56666665334445555555566789999998 999999
Q ss_pred EEcccc
Q psy18231 530 WTAEED 535 (540)
Q Consensus 530 w~~~~~ 535 (540)
|++..+
T Consensus 290 ~e~~~~ 295 (568)
T PTZ00420 290 YQHSLG 295 (568)
T ss_pred EEccCC
Confidence 999765
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-28 Score=238.11 Aligned_cols=248 Identities=15% Similarity=0.214 Sum_probs=191.2
Q ss_pred CcceeEEEEeeCCCeEEEeeCCCeEEEEEcCCCcee-------------EeccccCCceeEEEECC-CCCEEEEecCCCc
Q psy18231 206 AHEVNDATAACDSSQIASGASDKSVILWEVTTGQPV-------------RRWREHASKVTCVKFNE-DSSVVISGSQDNT 271 (540)
Q Consensus 206 ~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~-------------~~~~~h~~~v~~~~~~~-~~~~l~s~~~dg~ 271 (540)
-..|.....++++..+++++.+.....|+...+..+ ..+.+|.+.|.+++|+| ++++|++++.||+
T Consensus 20 ~~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~Dgt 99 (493)
T PTZ00421 20 FLNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDGT 99 (493)
T ss_pred eeccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCCE
Confidence 344555666667677777777777777775433221 13668999999999999 8899999999999
Q ss_pred EEEEEecCCCCCCcchhhhhHhhhhcCCceeEEEEeecccccccccCceeeEEEeeeecccccceeeeeeccceeEEEee
Q psy18231 272 VMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLD 351 (540)
Q Consensus 272 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (540)
|++||+.+.......
T Consensus 100 IkIWdi~~~~~~~~~----------------------------------------------------------------- 114 (493)
T PTZ00421 100 IMGWGIPEEGLTQNI----------------------------------------------------------------- 114 (493)
T ss_pred EEEEecCCCcccccc-----------------------------------------------------------------
Confidence 999999765310000
Q ss_pred cccceecccccccccccchhhhhhcccccEEEEEecC---CeeEeeeCCCeEEEEeCCCCceEEeeeC--CceEEEEEec
Q psy18231 352 FLGSTQIGDVTPISIHNSCFQALKEARDSITSVHVSD---HEILTASLDCRIRRYDIRTGNLVTDYVG--EPIVDACFTR 426 (540)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~~--~~i~~~~~sp 426 (540)
...+..+.+|...|.+++|+| ++|++++.|+.|++||+++++.+..+.+ ..|.+++|+|
T Consensus 115 ----------------~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~sp 178 (493)
T PTZ00421 115 ----------------SDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNL 178 (493)
T ss_pred ----------------CcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEEEEC
Confidence 001225678999999999998 5799999999999999999998888764 5799999999
Q ss_pred CCcEEEeecCCCeEEEEeccccchhhhhccCcCCcceEEEEecCCCCeEEEee----CCCcEEEEEecCCcceeEEEecc
Q psy18231 427 DCQCILTCSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGS----SDGKIYKWQLVDSSQISTLIHSV 502 (540)
Q Consensus 427 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~s~~~~~l~s~s----~dg~i~iwd~~~~~~~~~~~~~~ 502 (540)
+|++|++++.|+.|++||+++++.+.++.+|.+.... .+.|.+++..+++++ .|+.|++||+++...........
T Consensus 179 dG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~-~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d 257 (493)
T PTZ00421 179 DGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQ-RCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLD 257 (493)
T ss_pred CCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcce-EEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccC
Confidence 9999999999999999999999998889888765432 336888887777654 57999999998765433322113
Q ss_pred cceeeeEEEEcCCCcEEEeec--CCeeEEEEcccc
Q psy18231 503 GKAVVNSLCSHPTRKHIMSAC--GNNVKLWTAEED 535 (540)
Q Consensus 503 ~~~~v~~l~~s~d~~~l~s~~--d~~i~iw~~~~~ 535 (540)
+...+....|++++++|++++ |+.|++||+.++
T Consensus 258 ~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~ 292 (493)
T PTZ00421 258 QSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNE 292 (493)
T ss_pred CCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCC
Confidence 344566778999999988876 999999999865
|
|
| >KOG1539|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.9e-27 Score=225.26 Aligned_cols=385 Identities=13% Similarity=0.161 Sum_probs=255.5
Q ss_pred cccccceeeeeccccccee-------eeee-cCeEEEEeCCC--CCEEEEeeCCCcEEEEcCCCCeeEEEeecCCcceeE
Q psy18231 142 ELPKEWSIRVYRPLTVNRE-------LFVL-SGLMHTRFPVD--GSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVND 211 (540)
Q Consensus 142 ~~~~~~~i~~~~~~~~~~~-------~~h~-~~v~~v~~spd--g~~lat~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~ 211 (540)
++..++.+.+|+......+ ..-+ +.|+++. +|. -+.++.|+.+|.+.|||+.+++.+.+++++...|++
T Consensus 129 a~d~~~~l~vw~~s~~~~e~~l~~~~~~~~~~~Ital~-HP~TYLNKIvvGs~~G~lql~Nvrt~K~v~~f~~~~s~IT~ 207 (910)
T KOG1539|consen 129 AVDISNILFVWKTSSIQEELYLQSTFLKVEGDFITALL-HPSTYLNKIVVGSSQGRLQLWNVRTGKVVYTFQEFFSRITA 207 (910)
T ss_pred EEEccCcEEEEEeccccccccccceeeeccCCceeeEe-cchhheeeEEEeecCCcEEEEEeccCcEEEEecccccceeE
Confidence 4456667888887663111 1111 2266664 553 346889999999999999999999999999999999
Q ss_pred EEEeeCCCeEEEeeCCCeEEEEEcCCCceeEeccccCCceeEEEECCCCC-EEEEecCCCcEEEEEecCCCCCCcchhhh
Q psy18231 212 ATAACDSSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSS-VVISGSQDNTVMMWDVKSRSHHPIQVRCL 290 (540)
Q Consensus 212 l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~ 290 (540)
+.=+|-=..+|.|..+|+|.+++++.++.+.+++...+.|+.++|..||+ .+++|+..|.+.+||++..+...+.
T Consensus 208 ieqsPaLDVVaiG~~~G~ViifNlK~dkil~sFk~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~---- 283 (910)
T KOG1539|consen 208 IEQSPALDVVAIGLENGTVIIFNLKFDKILMSFKQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVT---- 283 (910)
T ss_pred eccCCcceEEEEeccCceEEEEEcccCcEEEEEEccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeee----
Confidence 99999888999999999999999999999999976579999999999986 5677777899999999987632211
Q ss_pred hHhhhhcCCceeEEEEeecccccccccCceeeEEEeeeeccc-----------ccceeeee-e-ccceeEEEeeccccee
Q psy18231 291 NEALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYL-----------NGLLSGVL-M-STQHLMVLLDFLGSTQ 357 (540)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~-~-~~~~~~~~~~~~~~~~ 357 (540)
...+...+.....+...+-.........-.++.++.... ......+. + +....+.........+
T Consensus 284 ---~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r 360 (910)
T KOG1539|consen 284 ---RNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLR 360 (910)
T ss_pred ---eccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchh
Confidence 011112222222222222111111111112222221110 00011111 1 1111222111111111
Q ss_pred cccccccccccch-------------hh-hhhcccccEEEEEecC-------CeeEeeeCCCeEEEEeCCCCce-EEeee
Q psy18231 358 IGDVTPISIHNSC-------------FQ-ALKEARDSITSVHVSD-------HEILTASLDCRIRRYDIRTGNL-VTDYV 415 (540)
Q Consensus 358 ~~~~~~~~~~~~~-------------~~-~~~~~~~~v~~l~~~~-------~~l~~~~~dg~i~iwd~~~~~~-~~~~~ 415 (540)
...+.......+. .. ...-.-.+|..+++.. +.+...-.+..++.|+.++... ...+.
T Consensus 361 ~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~ 440 (910)
T KOG1539|consen 361 SFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLD 440 (910)
T ss_pred hhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEec
Confidence 1111111100000 00 1112234567777754 4455555678899999987654 23332
Q ss_pred -------CCceEEEEEecCCcEEEeecCCCeEEEEeccccchhhhh---ccCcCCcceEEEEecCCCCeEEEeeCCCcEE
Q psy18231 416 -------GEPIVDACFTRDCQCILTCSTDECLRLFDKATGELLEEY---KGHKSGDFRIECCLDSKDSQIFCGSSDGKIY 485 (540)
Q Consensus 416 -------~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~---~~~~~~v~~~~~~~s~~~~~l~s~s~dg~i~ 485 (540)
...+++++.++.|++.+.|...|.|.+|++++|-...+| ..|..+|+.+ +...-++.+++++.+|.++
T Consensus 441 ~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gl--a~D~~n~~~vsa~~~Gilk 518 (910)
T KOG1539|consen 441 PKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGL--AVDGTNRLLVSAGADGILK 518 (910)
T ss_pred CccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEE--EecCCCceEEEccCcceEE
Confidence 247999999999999999999999999999999888888 5899999988 6667788899999999999
Q ss_pred EEEecCCcceeEEE---------------------------------------ecccceeeeEEEEcCCCcEEEeec-CC
Q psy18231 486 KWQLVDSSQISTLI---------------------------------------HSVGKAVVNSLCSHPTRKHIMSAC-GN 525 (540)
Q Consensus 486 iwd~~~~~~~~~~~---------------------------------------~~~~~~~v~~l~~s~d~~~l~s~~-d~ 525 (540)
+||.....++..+. ..+|...|++++|||||++|++++ |+
T Consensus 519 fw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~ 598 (910)
T KOG1539|consen 519 FWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDS 598 (910)
T ss_pred EEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCC
Confidence 99987644322211 016899999999999999999999 99
Q ss_pred eeEEEEccccc
Q psy18231 526 NVKLWTAEEDY 536 (540)
Q Consensus 526 ~i~iw~~~~~~ 536 (540)
+|++||+.++.
T Consensus 599 tIr~wDlpt~~ 609 (910)
T KOG1539|consen 599 TIRTWDLPTGT 609 (910)
T ss_pred cEEEEeccCcc
Confidence 99999998864
|
|
| >KOG2106|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.3e-27 Score=212.18 Aligned_cols=353 Identities=14% Similarity=0.192 Sum_probs=249.1
Q ss_pred Ccceeccccchhhhh-hcccccceeeeeccccccee---eeeecCeEEEEeCCCCCEEEEeeCCCcEEEEcCCCCeeEEE
Q psy18231 126 HPLLFSLPRTITRIL-YELPKEWSIRVYRPLTVNRE---LFVLSGLMHTRFPVDGSYCLTCGSDKKIKLWNPYRNLLLKT 201 (540)
Q Consensus 126 ~~~~~s~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~---~~h~~~v~~v~~spdg~~lat~~~dg~i~iwd~~~~~~~~~ 201 (540)
..+.||.......++ ...+.+.-+.+|+.....+. ....+.|....|+|.+..|+.....|.+..|+++.+.+.++
T Consensus 158 ~~vaFsk~~~G~~l~~vD~s~~h~lSVWdWqk~~~~~~vk~sne~v~~a~FHPtd~nliit~Gk~H~~Fw~~~~~~l~k~ 237 (626)
T KOG2106|consen 158 TCVAFSKINGGSLLCAVDDSNPHMLSVWDWQKKAKLGPVKTSNEVVFLATFHPTDPNLIITCGKGHLYFWTLRGGSLVKR 237 (626)
T ss_pred eeeeecccCCCceEEEecCCCccccchhhchhhhccCcceeccceEEEEEeccCCCcEEEEeCCceEEEEEccCCceEEE
Confidence 344555443333332 34566677888887765543 22456788999999665555444579999999988866554
Q ss_pred ---eec-CCcceeEEEEeeCCCeEEEeeCCCeEEEEEcCCCceeEeccccCCceeEEEECCCCCEEEEecCCCcEEEEEe
Q psy18231 202 ---YGG-HAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDV 277 (540)
Q Consensus 202 ---~~~-h~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~ 277 (540)
+.. .+.-|.|++|.++|. ++||.++|.|.||+..+.+..+....|.+.|.+++...+|.+ ++|+.|+.|..||-
T Consensus 238 ~~~fek~ekk~Vl~v~F~engd-viTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~Gtl-lSGgKDRki~~Wd~ 315 (626)
T KOG2106|consen 238 QGIFEKREKKFVLCVTFLENGD-VITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRDGTL-LSGGKDRKIILWDD 315 (626)
T ss_pred eeccccccceEEEEEEEcCCCC-EEeecCCceEEEEeCCCceEEeEeeecCCceEEEEEecCccE-eecCccceEEeccc
Confidence 333 246799999999886 899999999999999888877777799999999999999875 55999999999993
Q ss_pred cCCCCCCcchhhhhHhhhhcCCceeEEEEeecccccccccCceeeEEEeeeecccccceeeeeeccceeEEEeeccccee
Q psy18231 278 KSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQ 357 (540)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (540)
.-.+..++. + .+..+.+..+ .... ..+.+...++...
T Consensus 316 ~y~k~r~~e---l----Pe~~G~iRtv---~e~~---------------------------------~di~vGTtrN~iL 352 (626)
T KOG2106|consen 316 NYRKLRETE---L----PEQFGPIRTV---AEGK---------------------------------GDILVGTTRNFIL 352 (626)
T ss_pred ccccccccc---C----chhcCCeeEE---ecCC---------------------------------CcEEEeeccceEE
Confidence 322221211 1 1111111111 0000 0011111111111
Q ss_pred cccccccccccchhhhhhcccccEEEEEecC--CeeEeeeCCCeEEEEeCCCCceEEe-eeCCceEEEEEecCCcEEEee
Q psy18231 358 IGDVTPISIHNSCFQALKEARDSITSVHVSD--HEILTASLDCRIRRYDIRTGNLVTD-YVGEPIVDACFTRDCQCILTC 434 (540)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~-~~~~~i~~~~~sp~~~~l~~~ 434 (540)
.+. +.........+|.+....++.+| +++++++.|+.+++|+ ..++..+ ....+..++.|+|.| .+|.|
T Consensus 353 ~Gt-----~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~~~~d~~~~~~fhpsg-~va~G 424 (626)
T KOG2106|consen 353 QGT-----LENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTKIIEDPAECADFHPSG-VVAVG 424 (626)
T ss_pred Eee-----ecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc--CCceeEEEEecCceeEeeccCcc-eEEEe
Confidence 111 11112225568888999999998 8999999999999999 4444433 446899999999999 99999
Q ss_pred cCCCeEEEEeccccchhhhhccCcCCcceEEEEecCCCCeEEEeeCCCcEEEEEecCCcceeEEEecccceeeeEEEEcC
Q psy18231 435 STDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHP 514 (540)
Q Consensus 435 ~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~ 514 (540)
+..|...+.|.++...+..-.. ..++..+ .|+|+|.+||.|+.|+.|+||.+.............+..+|+.+.||+
T Consensus 425 t~~G~w~V~d~e~~~lv~~~~d-~~~ls~v--~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~ 501 (626)
T KOG2106|consen 425 TATGRWFVLDTETQDLVTIHTD-NEQLSVV--RYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGKCSGSPITHLDWSS 501 (626)
T ss_pred eccceEEEEecccceeEEEEec-CCceEEE--EEcCCCCEEEEecCCCeEEEEEECCCCcEEEEeeeecCceeEEeeecC
Confidence 9999999999998655544444 7778877 899999999999999999999997654433333224558999999999
Q ss_pred CCcEEEeec-CCeeEEEEcccc
Q psy18231 515 TRKHIMSAC-GNNVKLWTAEED 535 (540)
Q Consensus 515 d~~~l~s~~-d~~i~iw~~~~~ 535 (540)
|+++|.+-+ |-.|..| .+++
T Consensus 502 Ds~~~~~~S~d~eiLyW-~~~~ 522 (626)
T KOG2106|consen 502 DSQFLVSNSGDYEILYW-KPSE 522 (626)
T ss_pred CCceEEeccCceEEEEE-cccc
Confidence 999999999 9999999 4443
|
|
| >KOG1407|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.4e-29 Score=204.02 Aligned_cols=244 Identities=18% Similarity=0.288 Sum_probs=208.4
Q ss_pred EEeecCCcceeEEEEeeCCCeEEEeeCCCeEEEEEcCCCceeEe--ccccCCceeEEEECC-CCCEEEEecCCCcEEEEE
Q psy18231 200 KTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPVRR--WREHASKVTCVKFNE-DSSVVISGSQDNTVMMWD 276 (540)
Q Consensus 200 ~~~~~h~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~--~~~h~~~v~~~~~~~-~~~~l~s~~~dg~i~iwd 276 (540)
+.+++|...|.+++|+.+|..|++|+.|+++.+|+++..+.... ..+|.+.|-.++|+| ....+++++.|.+|++||
T Consensus 14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd 93 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWD 93 (313)
T ss_pred HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEE
Confidence 45678999999999999999999999999999999988755443 468999999999998 567999999999999999
Q ss_pred ecCCCCCCcchhhhhHhhhhcCCceeEEEEeecccccccccCceeeEEEeeeecccccceeeeeeccceeEEEeecccce
Q psy18231 277 VKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGST 356 (540)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (540)
++.+++ ..
T Consensus 94 ~r~~k~--~~---------------------------------------------------------------------- 101 (313)
T KOG1407|consen 94 IRSGKC--TA---------------------------------------------------------------------- 101 (313)
T ss_pred eccCcE--EE----------------------------------------------------------------------
Confidence 999873 11
Q ss_pred ecccccccccccchhhhhhcccccEEEEEecC--CeeEeeeCCCeEEEEeCCCCceEEeeeC-CceEEEEEecCCcEEEe
Q psy18231 357 QIGDVTPISIHNSCFQALKEARDSITSVHVSD--HEILTASLDCRIRRYDIRTGNLVTDYVG-EPIVDACFTRDCQCILT 433 (540)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~i~~~~~sp~~~~l~~ 433 (540)
... ....-.-+.|+| ++++++..|..|.+.|.++.+.+...+. ..+.-++|+.++.+++.
T Consensus 102 ----------------~i~-~~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~~nd~Ffl 164 (313)
T KOG1407|consen 102 ----------------RIE-TKGENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFKFEVNEISWNNSNDLFFL 164 (313)
T ss_pred ----------------Eee-ccCcceEEEEcCCCCEEEEecCcccEEEEEecccceeehhcccceeeeeeecCCCCEEEE
Confidence 000 112223467777 8999999999999999999888777764 46888999988888888
Q ss_pred ecCCCeEEEEeccccchhhhhccCcCCcceEEEEecCCCCeEEEeeCCCcEEEEEecCCcceeEEEecccceeeeEEEEc
Q psy18231 434 CSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSH 513 (540)
Q Consensus 434 ~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s 513 (540)
.+..|+|.|......+++..+++|.....++ .|+|+|+++|+|+.|..+.+||+..--+++.+. .+.-+|..+.||
T Consensus 165 t~GlG~v~ILsypsLkpv~si~AH~snCicI--~f~p~GryfA~GsADAlvSLWD~~ELiC~R~is--RldwpVRTlSFS 240 (313)
T KOG1407|consen 165 TNGLGCVEILSYPSLKPVQSIKAHPSNCICI--EFDPDGRYFATGSADALVSLWDVDELICERCIS--RLDWPVRTLSFS 240 (313)
T ss_pred ecCCceEEEEeccccccccccccCCcceEEE--EECCCCceEeeccccceeeccChhHhhhheeec--cccCceEEEEec
Confidence 8888999999999999999999999655444 999999999999999999999999999999998 799999999999
Q ss_pred CCCcEEEeec-CCeeEEEEccccc
Q psy18231 514 PTRKHIMSAC-GNNVKLWTAEEDY 536 (540)
Q Consensus 514 ~d~~~l~s~~-d~~i~iw~~~~~~ 536 (540)
.||++||+|+ |..|-|=++++|.
T Consensus 241 ~dg~~lASaSEDh~IDIA~vetGd 264 (313)
T KOG1407|consen 241 HDGRMLASASEDHFIDIAEVETGD 264 (313)
T ss_pred cCcceeeccCccceEEeEecccCC
Confidence 9999999999 9998777776653
|
|
| >KOG0640|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.7e-28 Score=206.44 Aligned_cols=250 Identities=18% Similarity=0.296 Sum_probs=203.4
Q ss_pred EEEeecCCcceeEEEEeeCCCeEEEeeCCCeEEEEEcCC------------C------ceeEeccccCCceeEEEECCCC
Q psy18231 199 LKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTT------------G------QPVRRWREHASKVTCVKFNEDS 260 (540)
Q Consensus 199 ~~~~~~h~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~------------~------~~~~~~~~h~~~v~~~~~~~~~ 260 (540)
...+..|++++.+.+|+|||.++|+|+.|..|+|.|++. + -.++++-.|.++|+++.|+|..
T Consensus 105 t~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre 184 (430)
T KOG0640|consen 105 TKYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRE 184 (430)
T ss_pred eEEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchh
Confidence 345678999999999999999999999999999999861 1 1466777899999999999999
Q ss_pred CEEEEecCCCcEEEEEecCCCCCCcchhhhhHhhhhcCCceeEEEEeecccccccccCceeeEEEeeeecccccceeeee
Q psy18231 261 SVVISGSQDNTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVL 340 (540)
Q Consensus 261 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (540)
..|++|+.|++|++||+.....+..
T Consensus 185 ~ILiS~srD~tvKlFDfsK~saKrA------------------------------------------------------- 209 (430)
T KOG0640|consen 185 TILISGSRDNTVKLFDFSKTSAKRA------------------------------------------------------- 209 (430)
T ss_pred heEEeccCCCeEEEEecccHHHHHH-------------------------------------------------------
Confidence 9999999999999999875431100
Q ss_pred eccceeEEEeecccceecccccccccccchhhhhhcccccEEEEEecC--CeeEeeeCCCeEEEEeCCCCceEEeeeC--
Q psy18231 341 MSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEARDSITSVHVSD--HEILTASLDCRIRRYDIRTGNLVTDYVG-- 416 (540)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~-- 416 (540)
. .......+|.+++|+| .++++|.....+++||+++-++...-..
T Consensus 210 ------------------------------~-K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~ 258 (430)
T KOG0640|consen 210 ------------------------------F-KVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDD 258 (430)
T ss_pred ------------------------------H-HHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCccc
Confidence 0 1222356899999999 8899999999999999999887655432
Q ss_pred ---CceEEEEEecCCcEEEeecCCCeEEEEeccccchhhhhcc-CcCCcceEEEEecCCCCeEEEeeCCCcEEEEEecCC
Q psy18231 417 ---EPIVDACFTRDCQCILTCSTDECLRLFDKATGELLEEYKG-HKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDS 492 (540)
Q Consensus 417 ---~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~v~~~~~~~s~~~~~l~s~s~dg~i~iwd~~~~ 492 (540)
..|+++.+++.|++.++++.||.|+|||--+++++.++.. |.+. ...+..|..+|+|+.+.+.|..|++|.+.++
T Consensus 259 qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gs-evcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~ 337 (430)
T KOG0640|consen 259 QHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGS-EVCSAVFTKNGKYILSSGKDSTVKLWEISTG 337 (430)
T ss_pred ccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCc-eeeeEEEccCCeEEeecCCcceeeeeeecCC
Confidence 5799999999999999999999999999999999999864 4433 2333479999999999999999999999999
Q ss_pred cceeEEEecccce---eeeEEEEcCCCcEEEeec--CCeeEEEEcccc
Q psy18231 493 SQISTLIHSVGKA---VVNSLCSHPTRKHIMSAC--GNNVKLWTAEED 535 (540)
Q Consensus 493 ~~~~~~~~~~~~~---~v~~l~~s~d~~~l~s~~--d~~i~iw~~~~~ 535 (540)
+.+......+..+ --+...|.....|++.-+ .+.+.-||..+.
T Consensus 338 R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRta 385 (430)
T KOG0640|consen 338 RMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTA 385 (430)
T ss_pred ceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccch
Confidence 9999887322122 234456777778887776 678888887765
|
|
| >KOG0300|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.5e-28 Score=207.37 Aligned_cols=283 Identities=17% Similarity=0.296 Sum_probs=233.9
Q ss_pred eeeeecCeEEEEeCCCCCEEEEeeCCCcEEEEcCCCCeeEEEeecCCcceeEEEEeeCCCeEEEeeCCCeEEEEEc----
Q psy18231 160 ELFVLSGLMHTRFPVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEV---- 235 (540)
Q Consensus 160 ~~~h~~~v~~v~~spdg~~lat~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~---- 235 (540)
..+|.+.|..++-......+.+++.|.+.+||.++++.++.++.||.+.|+++.|++.+.++++++.|++..||..
T Consensus 144 ~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~ 223 (481)
T KOG0300|consen 144 LEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNW 223 (481)
T ss_pred hcccccceeeehhhcCCcceeecccccceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcchHHHHHhhcC
Confidence 4679999999998887778999999999999999999999999999999999999999999999999999999972
Q ss_pred --CCC----------------------------------ceeEeccccCCceeEEEECCCCCEEEEecCCCcEEEEEecC
Q psy18231 236 --TTG----------------------------------QPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKS 279 (540)
Q Consensus 236 --~~~----------------------------------~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 279 (540)
... .++..+.+|.+.|.+..|...|+.+++++.|.+..+||+++
T Consensus 224 ~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEt 303 (481)
T KOG0300|consen 224 EVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVET 303 (481)
T ss_pred cCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccccceeeeecc
Confidence 110 14556788999999999999999999999999999999999
Q ss_pred CCCCCcchhhhhHhhhhcCCceeEEEEeecccccccccCceeeEEEeeeecccccceeeeeeccceeEEEeecccceecc
Q psy18231 280 RSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIG 359 (540)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (540)
++
T Consensus 304 ge------------------------------------------------------------------------------ 305 (481)
T KOG0300|consen 304 GE------------------------------------------------------------------------------ 305 (481)
T ss_pred Cc------------------------------------------------------------------------------
Confidence 87
Q ss_pred cccccccccchhhhhhcccccEEEEEecC--CeeEeeeCCCeEEEEeCCCC-ceEEeeeC--CceEEEEEecCCcEEEee
Q psy18231 360 DVTPISIHNSCFQALKEARDSITSVHVSD--HEILTASLDCRIRRYDIRTG-NLVTDYVG--EPIVDACFTRDCQCILTC 434 (540)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~v~~l~~~~--~~l~~~~~dg~i~iwd~~~~-~~~~~~~~--~~i~~~~~sp~~~~l~~~ 434 (540)
.+..+.+|....+.++-+| .++++++.|.+.++||.+.. ..+..+.+ ..|+++.|.-+. .+++|
T Consensus 306 ----------~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~dd-~vVSg 374 (481)
T KOG0300|consen 306 ----------VVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTDD-RVVSG 374 (481)
T ss_pred ----------eeccccCcchhccccccCCcceEEEEeccCceeEeccchhhcceeeeecccccceeEEEEecCC-ceeec
Confidence 2337788999999998888 77888999999999999843 23455555 579999998765 58899
Q ss_pred cCCCeEEEEeccccc-hhhhhccCcCCcceEEEEecCCCCeEEEeeCCCcEEEEEecCCcceeEEE---ecccceeeeEE
Q psy18231 435 STDECLRLFDKATGE-LLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLI---HSVGKAVVNSL 510 (540)
Q Consensus 435 ~~dg~i~i~d~~~~~-~~~~~~~~~~~v~~~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~---~~~~~~~v~~l 510 (540)
+.|.+|++||+++.+ ++.+++. ..++..+ +.+..+..|+.--.+..|++||+.-. .+..+. ..+|..-|.|+
T Consensus 375 SDDrTvKvWdLrNMRsplATIRt-dS~~NRv--avs~g~~iIAiPhDNRqvRlfDlnG~-RlaRlPrtsRqgHrRMV~c~ 450 (481)
T KOG0300|consen 375 SDDRTVKVWDLRNMRSPLATIRT-DSPANRV--AVSKGHPIIAIPHDNRQVRLFDLNGN-RLARLPRTSRQGHRRMVTCC 450 (481)
T ss_pred CCCceEEEeeeccccCcceeeec-CCcccee--EeecCCceEEeccCCceEEEEecCCC-ccccCCcccccccceeeeee
Confidence 999999999999864 4566653 3456666 66677778888888899999997543 333332 33899999999
Q ss_pred EEcCCC--cEEEeec-CCeeEEEEcccc
Q psy18231 511 CSHPTR--KHIMSAC-GNNVKLWTAEED 535 (540)
Q Consensus 511 ~~s~d~--~~l~s~~-d~~i~iw~~~~~ 535 (540)
+|..+. .-|++++ |..+.=|++...
T Consensus 451 AW~eehp~cnLftcGFDR~v~gW~in~p 478 (481)
T KOG0300|consen 451 AWLEEHPACNLFTCGFDRMVAGWKINTP 478 (481)
T ss_pred eccccCcccccccccccceeeeeEeccc
Confidence 998654 4577888 999999998754
|
|
| >KOG0288|consensus | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.3e-29 Score=218.63 Aligned_cols=256 Identities=21% Similarity=0.323 Sum_probs=217.0
Q ss_pred hhhhcccccceeeeecccccc-----eeeeeecCeEEEEeCCCCCEEEEeeCCCcEEEEcCCCCeeEEEeecCCcceeEE
Q psy18231 138 RILYELPKEWSIRVYRPLTVN-----RELFVLSGLMHTRFPVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDA 212 (540)
Q Consensus 138 ~~~~~~~~~~~i~~~~~~~~~-----~~~~h~~~v~~v~~spdg~~lat~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l 212 (540)
..++.++.|..|.+|+..... ...+-.++|+++.|.++++.+++++.|+.+++|++...+...++.+|++.|+++
T Consensus 188 dtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~TLsGHtdkVt~a 267 (459)
T KOG0288|consen 188 DTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSLRLRHTLSGHTDKVTAA 267 (459)
T ss_pred chhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCceeeeeccchhhhhhhcccccceeee
Confidence 456678889999999987754 223455779999999999999999999999999999999999999999999999
Q ss_pred EEeeCCCeEEEeeCCCeEEEEEcCCCceeEeccccCCceeEEEECCCCCEEEEecCCCcEEEEEecCCCCCCcchhhhhH
Q psy18231 213 TAACDSSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQVRCLNE 292 (540)
Q Consensus 213 ~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~ 292 (540)
.|......+++|+.|.+|++||+....+..++. ..+.+..|..+ ...+++|-.|+.|++||+++.....
T Consensus 268 k~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l-~~S~cnDI~~~--~~~~~SgH~DkkvRfwD~Rs~~~~~-------- 336 (459)
T KOG0288|consen 268 KFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVL-PGSQCNDIVCS--ISDVISGHFDKKVRFWDIRSADKTR-------- 336 (459)
T ss_pred hhhccccceeeccccchhhhhhhhhhheecccc-ccccccceEec--ceeeeecccccceEEEeccCCceee--------
Confidence 999877779999999999999999988877653 35566777765 4578899999999999998876211
Q ss_pred hhhhcCCceeEEEEeecccccccccCceeeEEEeeeecccccceeeeeeccceeEEEeecccceecccccccccccchhh
Q psy18231 293 ALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQ 372 (540)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (540)
T Consensus 337 -------------------------------------------------------------------------------- 336 (459)
T KOG0288|consen 337 -------------------------------------------------------------------------------- 336 (459)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhcccccEEEEEecC--CeeEeeeCCCeEEEEeCCCCceEEeeeC------CceEEEEEecCCcEEEeecCCCeEEEEe
Q psy18231 373 ALKEARDSITSVHVSD--HEILTASLDCRIRRYDIRTGNLVTDYVG------EPIVDACFTRDCQCILTCSTDECLRLFD 444 (540)
Q Consensus 373 ~~~~~~~~v~~l~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~------~~i~~~~~sp~~~~l~~~~~dg~i~i~d 444 (540)
.. .-.+.|+++..+. ..+++++.|.++.+.|+++.+....+.. +..+.+.|||++.|+++|+.||.|+||+
T Consensus 337 sv-~~gg~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~ 415 (459)
T KOG0288|consen 337 SV-PLGGRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWS 415 (459)
T ss_pred Ee-ecCcceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEECCCCceeeeccCCCcEEEEE
Confidence 11 1234788888877 6788889999999999999988877753 5688999999999999999999999999
Q ss_pred ccccchhhhhccCcCC--cceEEEEecCCCCeEEEeeCCCcEEEE
Q psy18231 445 KATGELLEEYKGHKSG--DFRIECCLDSKDSQIFCGSSDGKIYKW 487 (540)
Q Consensus 445 ~~~~~~~~~~~~~~~~--v~~~~~~~s~~~~~l~s~s~dg~i~iw 487 (540)
+.++++...+...... |+++ +|+|.|..|++++.++.+.+|
T Consensus 416 v~tgKlE~~l~~s~s~~aI~s~--~W~~sG~~Llsadk~~~v~lW 458 (459)
T KOG0288|consen 416 VFTGKLEKVLSLSTSNAAITSL--SWNPSGSGLLSADKQKAVTLW 458 (459)
T ss_pred ccCceEEEEeccCCCCcceEEE--EEcCCCchhhcccCCcceEec
Confidence 9999998888766655 6666 899999999999999999999
|
|
| >KOG0289|consensus | Back alignment and domain information |
|---|
Probab=99.96 E-value=8.4e-28 Score=211.14 Aligned_cols=235 Identities=22% Similarity=0.303 Sum_probs=211.3
Q ss_pred CcceeEEEEeeCCCeEEEeeCCCeEEEEEcCCCceeEeccccCCceeEEEECCCCCEEEEecCCCcEEEEEecCCCCCCc
Q psy18231 206 AHEVNDATAACDSSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPI 285 (540)
Q Consensus 206 ~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 285 (540)
...++++...|..+.+++|+.|.++.++|..+++.+..+++|...|+.+.|+|+...+++++.|..|++|.......
T Consensus 219 ~pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~--- 295 (506)
T KOG0289|consen 219 TPGITALDIIPSSSKILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSE--- 295 (506)
T ss_pred CCCeeEEeecCCCCcceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccC---
Confidence 35678888888778899999999999999999999999999999999999999999999999999999999866541
Q ss_pred chhhhhHhhhhcCCceeEEEEeecccccccccCceeeEEEeeeecccccceeeeeeccceeEEEeecccceecccccccc
Q psy18231 286 QVRCLNEALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPIS 365 (540)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 365 (540)
T Consensus 296 -------------------------------------------------------------------------------- 295 (506)
T KOG0289|consen 296 -------------------------------------------------------------------------------- 295 (506)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccchhhhhhcccccEEEEEecC--CeeEeeeCCCeEEEEeCCCCceEEeeeC----CceEEEEEecCCcEEEeecCCCe
Q psy18231 366 IHNSCFQALKEARDSITSVHVSD--HEILTASLDCRIRRYDIRTGNLVTDYVG----EPIVDACFTRDCQCILTCSTDEC 439 (540)
Q Consensus 366 ~~~~~~~~~~~~~~~v~~l~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~----~~i~~~~~sp~~~~l~~~~~dg~ 439 (540)
......|..+|+.+..+| .+|++++.||+..+.|++++..+..... -.+++++|+|||.+|.+|..|+.
T Consensus 296 -----~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~ 370 (506)
T KOG0289|consen 296 -----PTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGV 370 (506)
T ss_pred -----ccccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCce
Confidence 125567899999999998 9999999999999999999998877654 25899999999999999999999
Q ss_pred EEEEeccccchhhhhccCcCCcceEEEEecCCCCeEEEeeCCCcEEEEEecCCcceeEEEecccceeeeEEEEcCCCcEE
Q psy18231 440 LRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHI 519 (540)
Q Consensus 440 i~i~d~~~~~~~~~~~~~~~~v~~~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l 519 (540)
|+|||+.++..+..|.+|+++|..+ +|+.+|-|||++.+|+.|++||++..+...++... ....|.++.|.+.|.+|
T Consensus 371 vkiwdlks~~~~a~Fpght~~vk~i--~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~-~~~~v~s~~fD~SGt~L 447 (506)
T KOG0289|consen 371 VKIWDLKSQTNVAKFPGHTGPVKAI--SFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLD-EKKEVNSLSFDQSGTYL 447 (506)
T ss_pred EEEEEcCCccccccCCCCCCceeEE--EeccCceEEEEEecCCeEEEEEehhhcccceeecc-ccccceeEEEcCCCCeE
Confidence 9999999999999999999999999 89999999999999999999999999988888752 33479999999999999
Q ss_pred Eeec-CCeeEEEE
Q psy18231 520 MSAC-GNNVKLWT 531 (540)
Q Consensus 520 ~s~~-d~~i~iw~ 531 (540)
+.++ |=+|++++
T Consensus 448 ~~~g~~l~Vy~~~ 460 (506)
T KOG0289|consen 448 GIAGSDLQVYICK 460 (506)
T ss_pred EeecceeEEEEEe
Confidence 9998 76777665
|
|
| >KOG1063|consensus | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.7e-26 Score=214.50 Aligned_cols=383 Identities=16% Similarity=0.208 Sum_probs=260.1
Q ss_pred ccccceeeeeccccc---ceeeeeecCeEEEEeCCCCC---EEEEeeCCCcEEEEcCCCC--eeEEEeecCCcceeEEEE
Q psy18231 143 LPKEWSIRVYRPLTV---NRELFVLSGLMHTRFPVDGS---YCLTCGSDKKIKLWNPYRN--LLLKTYGGHAHEVNDATA 214 (540)
Q Consensus 143 ~~~~~~i~~~~~~~~---~~~~~h~~~v~~v~~spdg~---~lat~~~dg~i~iwd~~~~--~~~~~~~~h~~~v~~l~~ 214 (540)
.+....|.+|++.+. ..+.+|..+|+|+.|-|+.+ ++++|+.|+.|.+|.+... ..+.++.+|...+.| +
T Consensus 30 fGa~~~Iav~dp~k~~i~t~l~GH~a~VnC~~~l~~s~~~a~~vsG~sD~~v~lW~l~~~~~~~i~~~~g~~~~~~c--v 107 (764)
T KOG1063|consen 30 FGAGPAIAVADPEKILIVTTLDGHVARVNCVHWLPTSEIVAEMVSGDSDGRVILWKLRDEYLIKIYTIQGHCKECVC--V 107 (764)
T ss_pred ecCCceEEEeCcccceeEEeccCCccceEEEEEcccccccceEEEccCCCcEEEEEEeehheEEEEeecCcceeEEE--E
Confidence 345556778887765 24567999999999999887 8999999999999998844 344556666555544 4
Q ss_pred eeCCCeEEEeeCCCeEEEEEcCCCc--------------------------------------------------eeEec
Q psy18231 215 ACDSSQIASGASDKSVILWEVTTGQ--------------------------------------------------PVRRW 244 (540)
Q Consensus 215 sp~~~~l~s~s~dg~i~iwd~~~~~--------------------------------------------------~~~~~ 244 (540)
+.......+.+.|+++.+||.+..+ .+..+
T Consensus 108 ~a~~~~~~~~~ad~~v~vw~~~~~e~~~~~~~rf~~k~~ipLcL~~~~~~~~~lla~Ggs~~~v~~~s~~~d~f~~v~el 187 (764)
T KOG1063|consen 108 VARSSVMTCKAADGTVSVWDKQQDEVFLLAVLRFEIKEAIPLCLAALKNNKTFLLACGGSKFVVDLYSSSADSFARVAEL 187 (764)
T ss_pred EeeeeEEEeeccCceEEEeecCCCceeeehheehhhhhHhhHHHhhhccCCcEEEEecCcceEEEEeccCCcceeEEEEe
Confidence 4322233333678888888873221 23445
Q ss_pred cccCCceeEEEECCCC---CEEEEecCCCcEEEEEecCCCCCCcch-----------------------hhhhHhhhhcC
Q psy18231 245 REHASKVTCVKFNEDS---SVVISGSQDNTVMMWDVKSRSHHPIQV-----------------------RCLNEALKEAR 298 (540)
Q Consensus 245 ~~h~~~v~~~~~~~~~---~~l~s~~~dg~i~iwd~~~~~~~~~~~-----------------------~~~~~~~~~~~ 298 (540)
.+|.+.|.+++|...+ -+|+++|.|..|++|.+.-........ ...+..+.+
T Consensus 188 ~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~G-- 265 (764)
T KOG1063|consen 188 EGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMG-- 265 (764)
T ss_pred eccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcC--
Confidence 6899999999998743 489999999999999986544111000 001111222
Q ss_pred CceeEEEEeeccccc-ccccCceeeEEEeeeecccccc-----------------eeeeeeccceeEEEeecccceeccc
Q psy18231 299 DSITSVHSLVKSTKN-HLSNGLLTKLVFAFRCKYLNGL-----------------LSGVLMSTQHLMVLLDFLGSTQIGD 360 (540)
Q Consensus 299 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (540)
+...+..+...+.. .+...+.+..+..|.+....+. ..+........++.....|....|.
T Consensus 266 -HeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWk 344 (764)
T KOG1063|consen 266 -HEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHLWK 344 (764)
T ss_pred -cccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcEEEEe
Confidence 33344444444444 4555555555555554443221 1222222333344445555555555
Q ss_pred ccccccccchhhhhhcccccEEEEEecC--CeeEeeeCCCeEEEEeCC--------------------------------
Q psy18231 361 VTPISIHNSCFQALKEARDSITSVHVSD--HEILTASLDCRIRRYDIR-------------------------------- 406 (540)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~v~~l~~~~--~~l~~~~~dg~i~iwd~~-------------------------------- 406 (540)
..............+|.+.|.+++|+| .++++.+.|.+-|++-.-
T Consensus 345 -t~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~~~FV 423 (764)
T KOG1063|consen 345 -TKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNEDLQFV 423 (764)
T ss_pred -ccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehccCCceee
Confidence 111122223346678999999999997 888888988888876211
Q ss_pred ---------------------------------------------------------CCce----E--------------
Q psy18231 407 ---------------------------------------------------------TGNL----V-------------- 411 (540)
Q Consensus 407 ---------------------------------------------------------~~~~----~-------------- 411 (540)
+|.. .
T Consensus 424 SgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~eP 503 (764)
T KOG1063|consen 424 SGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEP 503 (764)
T ss_pred ecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCC
Confidence 0000 0
Q ss_pred ---------------Eee--eCCceEEEEEecCCcEEEeecCC-----CeEEEEeccccchhhhhccCcCCcceEEEEec
Q psy18231 412 ---------------TDY--VGEPIVDACFTRDCQCILTCSTD-----ECLRLFDKATGELLEEYKGHKSGDFRIECCLD 469 (540)
Q Consensus 412 ---------------~~~--~~~~i~~~~~sp~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~s 469 (540)
.++ ++..|++++.+|+|+++|+++.. -.|++|+..+...+..+.+|.-.|+.+ +||
T Consensus 504 P~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l--~FS 581 (764)
T KOG1063|consen 504 PTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRL--AFS 581 (764)
T ss_pred ChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEE--EEC
Confidence 000 11358999999999999999864 359999999999999999999888877 999
Q ss_pred CCCCeEEEeeCCCcEEEEEecCCcc----eeEEEecccceeeeEEEEcCCCcEEEeec-CCeeEEEEcccc
Q psy18231 470 SKDSQIFCGSSDGKIYKWQLVDSSQ----ISTLIHSVGKAVVNSLCSHPTRKHIMSAC-GNNVKLWTAEED 535 (540)
Q Consensus 470 ~~~~~l~s~s~dg~i~iwd~~~~~~----~~~~~~~~~~~~v~~l~~s~d~~~l~s~~-d~~i~iw~~~~~ 535 (540)
|||++|++.+.|.++.+|....... ....+ .|..-|.++.|+|++.+++|++ |.+|++|..+++
T Consensus 582 pdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k--~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~ 650 (764)
T KOG1063|consen 582 PDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLK--AHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDL 650 (764)
T ss_pred CCCcEEEEeecCceEEeeeeecccchhhhhcccc--ccceEEEEcccCcccceeEEecCCceEEEEeccCc
Confidence 9999999999999999999755422 22344 8999999999999999999999 999999998765
|
|
| >KOG0299|consensus | Back alignment and domain information |
|---|
Probab=99.96 E-value=5e-28 Score=214.25 Aligned_cols=235 Identities=19% Similarity=0.297 Sum_probs=200.1
Q ss_pred eeecCeEEEEeCCCCCEEEEeeCCCcEEEEcCCCCeeEEEeecCCcceeEEEEeeCCCeEEEeeCCCeEEEEEcCCCcee
Q psy18231 162 FVLSGLMHTRFPVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPV 241 (540)
Q Consensus 162 ~h~~~v~~v~~spdg~~lat~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~ 241 (540)
.|...+.+++.|+||+|||+|+.|..|.||+..+.+.++.+++|.+.|.+++|-.....|++++.|++|++|+++....+
T Consensus 200 ~h~keil~~avS~Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~v 279 (479)
T KOG0299|consen 200 GHVKEILTLAVSSDGKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYV 279 (479)
T ss_pred cccceeEEEEEcCCCcEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHHH
Confidence 68899999999999999999999999999999999999999999999999999988889999999999999999999999
Q ss_pred EeccccCCceeEEEECCCCCEEEEecCCCcEEEEEecCCCCCCcchhhhhHhhhhcCCceeEEEEeecccccccccCcee
Q psy18231 242 RRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHLSNGLLT 321 (540)
Q Consensus 242 ~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (540)
.++.+|.+.|..+....-++.+-+|+.|+++++|++.....
T Consensus 280 etlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~eesq--------------------------------------- 320 (479)
T KOG0299|consen 280 ETLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEESQ--------------------------------------- 320 (479)
T ss_pred HHHhCCccceeeechhcccceEEeccccceeEEEeccccce---------------------------------------
Confidence 99999999999999988777777777999999999954331
Q ss_pred eEEEeeeecccccceeeeeeccceeEEEeecccceecccccccccccchhhhhhcccccEEEEEecC-CeeEeeeCCCeE
Q psy18231 322 KLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEARDSITSVHVSD-HEILTASLDCRI 400 (540)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~-~~l~~~~~dg~i 400 (540)
..+.++.+.+-|++|-. ..+++|+.+|.|
T Consensus 321 --------------------------------------------------lifrg~~~sidcv~~In~~HfvsGSdnG~I 350 (479)
T KOG0299|consen 321 --------------------------------------------------LIFRGGEGSIDCVAFINDEHFVSGSDNGSI 350 (479)
T ss_pred --------------------------------------------------eeeeCCCCCeeeEEEecccceeeccCCceE
Confidence 14556788899999877 999999999999
Q ss_pred EEEeCCCCceEEeeeC------C--------ceEEEEEecCCcEEEeecCCCeEEEEecccc----chhhhhccCcCCcc
Q psy18231 401 RRYDIRTGNLVTDYVG------E--------PIVDACFTRDCQCILTCSTDECLRLFDKATG----ELLEEYKGHKSGDF 462 (540)
Q Consensus 401 ~iwd~~~~~~~~~~~~------~--------~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~----~~~~~~~~~~~~v~ 462 (540)
.+|++.+.+++..... . .|++++..|...++++|+.+|.|++|-+..+ +++..+. -.+-|+
T Consensus 351 aLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls-~~GfVN 429 (479)
T KOG0299|consen 351 ALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLS-LVGFVN 429 (479)
T ss_pred EEeeecccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeecc-cccEEE
Confidence 9999999988776531 1 6899999999999999999999999998877 3344443 445566
Q ss_pred eEEEEecCCCCeEEEe-eCCCcEEEEE
Q psy18231 463 RIECCLDSKDSQIFCG-SSDGKIYKWQ 488 (540)
Q Consensus 463 ~~~~~~s~~~~~l~s~-s~dg~i~iwd 488 (540)
.+ +|+++|+++++| +....+--|-
T Consensus 430 sl--~f~~sgk~ivagiGkEhRlGRW~ 454 (479)
T KOG0299|consen 430 SL--AFSNSGKRIVAGIGKEHRLGRWW 454 (479)
T ss_pred EE--EEccCCCEEEEecccccccceee
Confidence 66 899999976655 4444444443
|
|
| >KOG0300|consensus | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.2e-28 Score=205.36 Aligned_cols=294 Identities=18% Similarity=0.314 Sum_probs=225.6
Q ss_pred EEEEeeCCCcEEEEcCCCCeeEEEeecCCcceeEEEEeeCCCeEEEeeCCCeEEEEEcCCCceeEeccccCCceeEEEEC
Q psy18231 178 YCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFN 257 (540)
Q Consensus 178 ~lat~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~ 257 (540)
.|++.-.++++. .++++.+.||+..|+.++.....+.+.+++.|.+.+||.+++|+++..+.+|.+.|+++.|+
T Consensus 126 rivssFk~~t~~------~~lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh 199 (481)
T KOG0300|consen 126 RIVSSFKDGTVK------FRLVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFH 199 (481)
T ss_pred hheeeecCCcee------EeehhhhcccccceeeehhhcCCcceeecccccceeEEeeccccceeeecccccceeeEEec
Confidence 456666666642 34567788999999999998877899999999999999999999999999999999999999
Q ss_pred CCCCEEEEecCCCcEEEEEecCCCCCCcchh----hhhHhhhhcCCceeEEEEeecccccccccCceeeEEEeeeecccc
Q psy18231 258 EDSSVVISGSQDNTVMMWDVKSRSHHPIQVR----CLNEALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLN 333 (540)
Q Consensus 258 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (540)
+.+.++++++.|++-.||...-.-..+.... ..++....... ..
T Consensus 200 ~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe--------------------------------~~ 247 (481)
T KOG0300|consen 200 NSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDE--------------------------------HN 247 (481)
T ss_pred cccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccc--------------------------------cc
Confidence 9999999999999999997432211111000 00000000000 00
Q ss_pred cceeeeeeccceeEEEeecccceecccccccccccchhhhhhcccccEEEEEecC--CeeEeeeCCCeEEEEeCCCCceE
Q psy18231 334 GLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEARDSITSVHVSD--HEILTASLDCRIRRYDIRTGNLV 411 (540)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~--~~l~~~~~dg~i~iwd~~~~~~~ 411 (540)
....+...+++..+ ..++..+.+|...|.+..|-. +.+++++.|.+..+||+++++++
T Consensus 248 ~d~d~~~~sD~~ti--------------------RvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v 307 (481)
T KOG0300|consen 248 RDTDSSEKSDGHTI--------------------RVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVETGEVV 307 (481)
T ss_pred cccccccccCCcee--------------------eeeeeeeeccccceEehhhhcCcceeeeeeccccceeeeeccCcee
Confidence 00000000011111 113446788999999998865 89999999999999999999999
Q ss_pred EeeeC--CceEEEEEecCCcEEEeecCCCeEEEEecccc-chhhhhccCcCCcceEEEEecCCCCeEEEeeCCCcEEEEE
Q psy18231 412 TDYVG--EPIVDACFTRDCQCILTCSTDECLRLFDKATG-ELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQ 488 (540)
Q Consensus 412 ~~~~~--~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~v~~~~~~~s~~~~~l~s~s~dg~i~iwd 488 (540)
..+.+ +..+.++-+|..+++++++.|-+.++||++.. ..+..|++|+..|++. .|..+ ..+++|+.|.+|+|||
T Consensus 308 ~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~--vF~~d-d~vVSgSDDrTvKvWd 384 (481)
T KOG0300|consen 308 NILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSV--VFNTD-DRVVSGSDDRTVKVWD 384 (481)
T ss_pred ccccCcchhccccccCCcceEEEEeccCceeEeccchhhcceeeeecccccceeEE--EEecC-CceeecCCCceEEEee
Confidence 99987 47889999999999999999999999999843 4578899999999888 66654 4699999999999999
Q ss_pred ecCC-cceeEEEecccceeeeEEEEcCCCcEEEeec-CCeeEEEEcccc
Q psy18231 489 LVDS-SQISTLIHSVGKAVVNSLCSHPTRKHIMSAC-GNNVKLWTAEED 535 (540)
Q Consensus 489 ~~~~-~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~-d~~i~iw~~~~~ 535 (540)
+++. .++.+++ ..++++.++.+..++.|+.-. +..|++||+...
T Consensus 385 LrNMRsplATIR---tdS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~ 430 (481)
T KOG0300|consen 385 LRNMRSPLATIR---TDSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGN 430 (481)
T ss_pred eccccCcceeee---cCCccceeEeecCCceEEeccCCceEEEEecCCC
Confidence 9886 4677776 678899999998888888888 779999999754
|
|
| >KOG0973|consensus | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.8e-28 Score=236.00 Aligned_cols=268 Identities=19% Similarity=0.201 Sum_probs=197.0
Q ss_pred ccceeeeecccccc---------------eeeeeecCeEEEEeCCCCCEEEEeeCCCcEEEEcCCC--------------
Q psy18231 145 KEWSIRVYRPLTVN---------------RELFVLSGLMHTRFPVDGSYCLTCGSDKKIKLWNPYR-------------- 195 (540)
Q Consensus 145 ~~~~i~~~~~~~~~---------------~~~~h~~~v~~v~~spdg~~lat~~~dg~i~iwd~~~-------------- 195 (540)
.|+.+++|+..... ....|.+.|+|+.|+|||++||+|+.|+.|.||+...
T Consensus 35 ~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~ 114 (942)
T KOG0973|consen 35 LDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAK 114 (942)
T ss_pred ccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCcceEEEeeecccCCccccccccccc
Confidence 56667777654422 2245999999999999999999999999999998662
Q ss_pred ----CeeEEEeecCCcceeEEEEeeCCCeEEEeeCCCeEEEEEcCCCceeEeccccCCceeEEEECCCCCEEEEecCCCc
Q psy18231 196 ----NLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNT 271 (540)
Q Consensus 196 ----~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~ 271 (540)
.+....+.+|...|..++|+|++.+|++++.|++|.|||..+.+.+..+++|.+.|..+.|.|-|++|++-+.|++
T Consensus 115 ~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrt 194 (942)
T KOG0973|consen 115 NVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRT 194 (942)
T ss_pred ccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccccceeeeeeecccccccceEECCccCeeeeecCCce
Confidence 1467788999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEecCCCCCCcchhhhhHhhhhcCCceeEEEEeecccccccccCceeeEEEeeeecccccceeeeeeccceeEEEee
Q psy18231 272 VMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLD 351 (540)
Q Consensus 272 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (540)
|++|++.+.........+ .......+....+.+++++....... ..+ .....+.+.+
T Consensus 195 ikvwrt~dw~i~k~It~p-----f~~~~~~T~f~RlSWSPDG~~las~n----------A~n--------~~~~~~~Iie 251 (942)
T KOG0973|consen 195 LKVWRTSDWGIEKSITKP-----FEESPLTTFFLRLSWSPDGHHLASPN----------AVN--------GGKSTIAIIE 251 (942)
T ss_pred EEEEEcccceeeEeeccc-----hhhCCCcceeeecccCCCcCeecchh----------hcc--------CCcceeEEEe
Confidence 999997653311111000 00111112222233333322111000 000 0000111111
Q ss_pred cccceecccccccccccchhhhhhcccccEEEEEecC-------C------------eeEeeeCCCeEEEEeCCCCceEE
Q psy18231 352 FLGSTQIGDVTPISIHNSCFQALKEARDSITSVHVSD-------H------------EILTASLDCRIRRYDIRTGNLVT 412 (540)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~-------~------------~l~~~~~dg~i~iwd~~~~~~~~ 412 (540)
- . ....-..+.+|..++.++.|+| + .+++|+.|++|.||.....+++.
T Consensus 252 R----~---------tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~ 318 (942)
T KOG0973|consen 252 R----G---------TWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLF 318 (942)
T ss_pred c----C---------CceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchh
Confidence 0 0 1112236789999999999987 3 57899999999999998888776
Q ss_pred eee---CCceEEEEEecCCcEEEeecCCCeEEEEecccc
Q psy18231 413 DYV---GEPIVDACFTRDCQCILTCSTDECLRLFDKATG 448 (540)
Q Consensus 413 ~~~---~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~ 448 (540)
..+ ...|..++|+|||-.|.+++.||+|.++.++..
T Consensus 319 vi~~lf~~SI~DmsWspdG~~LfacS~DGtV~~i~Fee~ 357 (942)
T KOG0973|consen 319 VIHNLFNKSIVDMSWSPDGFSLFACSLDGTVALIHFEEK 357 (942)
T ss_pred hhhhhhcCceeeeeEcCCCCeEEEEecCCeEEEEEcchH
Confidence 555 589999999999999999999999999988653
|
|
| >KOG1332|consensus | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.1e-27 Score=194.95 Aligned_cols=242 Identities=17% Similarity=0.198 Sum_probs=196.3
Q ss_pred ecCCcceeEEEEeeCCCeEEEeeCCCeEEEEEcCCC---ceeEeccccCCceeEEEECC--CCCEEEEecCCCcEEEEEe
Q psy18231 203 GGHAHEVNDATAACDSSQIASGASDKSVILWEVTTG---QPVRRWREHASKVTCVKFNE--DSSVVISGSQDNTVMMWDV 277 (540)
Q Consensus 203 ~~h~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~---~~~~~~~~h~~~v~~~~~~~--~~~~l~s~~~dg~i~iwd~ 277 (540)
..|.+-|.++...-.|++|||++.|++|+|+..+.. +.+.++.+|.++|..++|.. .|.+|++++.||.|.||.-
T Consensus 8 t~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke 87 (299)
T KOG1332|consen 8 TQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKE 87 (299)
T ss_pred hhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEec
Confidence 468888988888888999999999999999999875 45778999999999999966 8999999999999999998
Q ss_pred cCCCCCCcchhhhhHhhhhcCCceeEEEEeecccccccccCceeeEEEeeeecccccceeeeeeccceeEEEeeccccee
Q psy18231 278 KSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQ 357 (540)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (540)
+.+.-.
T Consensus 88 ~~g~w~-------------------------------------------------------------------------- 93 (299)
T KOG1332|consen 88 ENGRWT-------------------------------------------------------------------------- 93 (299)
T ss_pred CCCchh--------------------------------------------------------------------------
Confidence 776421
Q ss_pred cccccccccccchhhhhhcccccEEEEEecC----CeeEeeeCCCeEEEEeCCCC-----ceEEeeeCCceEEEEEecC-
Q psy18231 358 IGDVTPISIHNSCFQALKEARDSITSVHVSD----HEILTASLDCRIRRYDIRTG-----NLVTDYVGEPIVDACFTRD- 427 (540)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~----~~l~~~~~dg~i~iwd~~~~-----~~~~~~~~~~i~~~~~sp~- 427 (540)
.......|...|++++|-| -.|++++.||.|.+.+.+.. +.+...+.-.+++++|.|.
T Consensus 94 ------------k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~ 161 (299)
T KOG1332|consen 94 ------------KAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPAS 161 (299)
T ss_pred ------------hhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcC
Confidence 1225668999999999998 56889999999999988755 1222333457999999985
Q ss_pred --C-----------cEEEeecCCCeEEEEecccc--chhhhhccCcCCcceEEEEecCCC----CeEEEeeCCCcEEEEE
Q psy18231 428 --C-----------QCILTCSTDECLRLFDKATG--ELLEEYKGHKSGDFRIECCLDSKD----SQIFCGSSDGKIYKWQ 488 (540)
Q Consensus 428 --~-----------~~l~~~~~dg~i~i~d~~~~--~~~~~~~~~~~~v~~~~~~~s~~~----~~l~s~s~dg~i~iwd 488 (540)
| +.|++|+.|+.|+||+..++ +.-+++.+|...|..+ +|.|.- .+||++|.||+|.||.
T Consensus 162 ~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDV--AwaP~~gl~~s~iAS~SqDg~viIwt 239 (299)
T KOG1332|consen 162 APGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDV--AWAPSVGLPKSTIASCSQDGTVIIWT 239 (299)
T ss_pred CCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhh--hhccccCCCceeeEEecCCCcEEEEE
Confidence 4 56999999999999998876 3456799999999998 555543 4699999999999998
Q ss_pred ecCC-cc--eeEEEecccceeeeEEEEcCCCcEEEeec-CCeeEEEEccc
Q psy18231 489 LVDS-SQ--ISTLIHSVGKAVVNSLCSHPTRKHIMSAC-GNNVKLWTAEE 534 (540)
Q Consensus 489 ~~~~-~~--~~~~~~~~~~~~v~~l~~s~d~~~l~s~~-d~~i~iw~~~~ 534 (540)
.... ++ ...++ .....+..+.||..|.+|+.++ |+.|.+|.-..
T Consensus 240 ~~~e~e~wk~tll~--~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~~ 287 (299)
T KOG1332|consen 240 KDEEYEPWKKTLLE--EFPDVVWRVSWSLSGNILAVSGGDNKVTLWKENV 287 (299)
T ss_pred ecCccCcccccccc--cCCcceEEEEEeccccEEEEecCCcEEEEEEeCC
Confidence 6522 11 11222 3557899999999999999999 99999998543
|
|
| >KOG0321|consensus | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.1e-27 Score=218.40 Aligned_cols=307 Identities=19% Similarity=0.302 Sum_probs=223.7
Q ss_pred EEEEeCC---CCCEEEEeeCCCcEEEEcCCCCee------EEEeecCCcceeEEEEeeCCCeEEEeeCCCeEEEEEcCCC
Q psy18231 168 MHTRFPV---DGSYCLTCGSDKKIKLWNPYRNLL------LKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTG 238 (540)
Q Consensus 168 ~~v~~sp---dg~~lat~~~dg~i~iwd~~~~~~------~~~~~~h~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~ 238 (540)
.+..|++ ....||.+..||.|.++|...... +.....|.+.|..+.|.|-...|++++.|.++++||++.+
T Consensus 53 f~~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s 132 (720)
T KOG0321|consen 53 FADSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTS 132 (720)
T ss_pred ccccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeeccc
Confidence 3456665 345789999999999999765422 3555679999999999997778999999999999999999
Q ss_pred ceeEe--ccccCCceeEEEECC-CCCEEEEecCCCcEEEEEecCCCCCCcchhhhhHhhhhcCCceeEEEEeeccccccc
Q psy18231 239 QPVRR--WREHASKVTCVKFNE-DSSVVISGSQDNTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHL 315 (540)
Q Consensus 239 ~~~~~--~~~h~~~v~~~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (540)
++... +.+|...|.+++|.| +...|++|+.||.|.|||++-.......... ..........
T Consensus 133 ~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~--~~~~~~~n~~-------------- 196 (720)
T KOG0321|consen 133 RLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFD--NRIYGRHNTA-------------- 196 (720)
T ss_pred eeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHh--hhhhccccCC--------------
Confidence 88776 789999999999999 5578999999999999999876521111000 0000000000
Q ss_pred ccCceeeEEEeeeecccccceeeeeeccceeEEEeecccceecccccccccccchhhhhhccc----ccEEEEEecC-Ce
Q psy18231 316 SNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEAR----DSITSVHVSD-HE 390 (540)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~v~~l~~~~-~~ 390 (540)
-.+.....+.......+. ..|+.+.|-. ..
T Consensus 197 ---------------------------------------------ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~t 231 (720)
T KOG0321|consen 197 ---------------------------------------------PTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDEST 231 (720)
T ss_pred ---------------------------------------------CCCCchhhccccccccccCceeeeeEEEEEeccce
Confidence 000000001111222232 3356677766 88
Q ss_pred eEeeeC-CCeEEEEeCCCCceEEeee-------------CCceEEEEEecCCcEEEeecCCCeEEEEecccc--chhhhh
Q psy18231 391 ILTASL-DCRIRRYDIRTGNLVTDYV-------------GEPIVDACFTRDCQCILTCSTDECLRLFDKATG--ELLEEY 454 (540)
Q Consensus 391 l~~~~~-dg~i~iwd~~~~~~~~~~~-------------~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~--~~~~~~ 454 (540)
|++++. |+.|++||+++........ ...+.++.....|.+|.+.+.|+.|++||+.+. .++..+
T Consensus 232 laSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~ 311 (720)
T KOG0321|consen 232 LASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISPVAEF 311 (720)
T ss_pred eeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcCchhhc
Confidence 888887 9999999999776543332 135788888888999999999999999999764 456677
Q ss_pred ccCcCCcceEEEEecCCCCeEEEeeCCCcEEEEEecCCccee-EEEecccceeeeEEEEcCCC-cEEEeec-CCeeEEEE
Q psy18231 455 KGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQIS-TLIHSVGKAVVNSLCSHPTR-KHIMSAC-GNNVKLWT 531 (540)
Q Consensus 455 ~~~~~~v~~~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~-~~~~~~~~~~v~~l~~s~d~-~~l~s~~-d~~i~iw~ 531 (540)
.++...-..+.-..+||+.+|++|+.|...++|.+.+.+.-. .+. +|.-.|++++|.|.. .-+++++ |.+++||+
T Consensus 312 sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~--Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~ 389 (720)
T KOG0321|consen 312 SGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALLL--GHTREVTTVRWLPSATTPVATCSDDFRVKIWR 389 (720)
T ss_pred cCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCChhhhh--CcceEEEEEeeccccCCCceeeccCcceEEEe
Confidence 777655555556789999999999999999999998876543 444 899999999997753 3355557 99999999
Q ss_pred cccccC
Q psy18231 532 AEEDYG 537 (540)
Q Consensus 532 ~~~~~~ 537 (540)
+.++..
T Consensus 390 l~~~l~ 395 (720)
T KOG0321|consen 390 LSNGLE 395 (720)
T ss_pred ccCchh
Confidence 977654
|
|
| >KOG1063|consensus | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.7e-26 Score=214.55 Aligned_cols=398 Identities=16% Similarity=0.174 Sum_probs=269.2
Q ss_pred cceeccccchhhhhhcccccceeeeecccccc----------------------------------eeeeeecCeEEEEe
Q psy18231 127 PLLFSLPRTITRILYELPKEWSIRVYRPLTVN----------------------------------RELFVLSGLMHTRF 172 (540)
Q Consensus 127 ~~~~s~~~~~~~~~~~~~~~~~i~~~~~~~~~----------------------------------~~~~h~~~v~~v~~ 172 (540)
.+.|........++++.+.|..||+|+..... ...+|++.|.++.|
T Consensus 196 sl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeDWV~sv~W 275 (764)
T KOG1063|consen 196 SLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHEDWVYSVWW 275 (764)
T ss_pred hhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcCcccceEEEEE
Confidence 45565555556778899999999999864322 11379999999999
Q ss_pred CCCCCEEEEeeCCCcEEEEcCCCCe-------eEEEeecCCcceeEEEEeeCCCeEEEeeCCCeEEEEEcCCC---ceeE
Q psy18231 173 PVDGSYCLTCGSDKKIKLWNPYRNL-------LLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTG---QPVR 242 (540)
Q Consensus 173 spdg~~lat~~~dg~i~iwd~~~~~-------~~~~~~~h~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~---~~~~ 242 (540)
+|++..|++++.|.++.+|...+.. .+-...+..+..++..|+|+++.+++-+..|..++|...+. ....
T Consensus 276 ~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~d~~~w~~~~ 355 (764)
T KOG1063|consen 276 HPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHLWKTKDKTFWTQEP 355 (764)
T ss_pred ccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcEEEEeccCccceeecc
Confidence 9999999999999999999876542 12223445667899999999999999999999999984332 2333
Q ss_pred eccccCCceeEEEECCCCCEEEEecCCCcEEEEEecCCCCCCcchhhhhHhhhhcCCceeEEEEeeccc-ccccccCcee
Q psy18231 243 RWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKST-KNHLSNGLLT 321 (540)
Q Consensus 243 ~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 321 (540)
.+.+|.+.|..++|+|.|.+|+++|.|.+-|++-.-..+.. - .+ +...+.+-..+..+.+-+ .....++...
T Consensus 356 ~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~-w--HE----iaRPQiHGyDl~c~~~vn~~~~FVSgAdE 428 (764)
T KOG1063|consen 356 VISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQE-W--HE----IARPQIHGYDLTCLSFVNEDLQFVSGADE 428 (764)
T ss_pred ccccccccceeeeecCCCCEEEEeccccceeeecccccccc-e--ee----ecccccccccceeeehccCCceeeecccc
Confidence 46799999999999999999999999999999865522211 0 00 111111112222222222 3333444444
Q ss_pred eEEEeeeeccc--------c--------cceeeeeec----cceeEEEeecc-cce-----------ecccccccc----
Q psy18231 322 KLVFAFRCKYL--------N--------GLLSGVLMS----TQHLMVLLDFL-GST-----------QIGDVTPIS---- 365 (540)
Q Consensus 322 ~~~~~~~~~~~--------~--------~~~~~~~~~----~~~~~~~~~~~-~~~-----------~~~~~~~~~---- 365 (540)
.....+..+.. . ....+...+ .++.....+.. |.. ....+...+
T Consensus 429 KVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~Edq 508 (764)
T KOG1063|consen 429 KVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQ 508 (764)
T ss_pred eeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCChHHH
Confidence 44444432210 0 000000000 00000000000 000 000000000
Q ss_pred ----cccchhhhhhcccccEEEEEecC--CeeEeeeCC-----CeEEEEeCCCCceEEeeeCC--ceEEEEEecCCcEEE
Q psy18231 366 ----IHNSCFQALKEARDSITSVHVSD--HEILTASLD-----CRIRRYDIRTGNLVTDYVGE--PIVDACFTRDCQCIL 432 (540)
Q Consensus 366 ----~~~~~~~~~~~~~~~v~~l~~~~--~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~--~i~~~~~sp~~~~l~ 432 (540)
.....++.+-+|...|.+++.+| +++++++.. ..|++|+..+...++.+.+| .|+.++|||||++|+
T Consensus 509 Lq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~LL 588 (764)
T KOG1063|consen 509 LQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPDGRYLL 588 (764)
T ss_pred HHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECCCCcEEE
Confidence 01223567789999999999998 778887754 45899999998888888776 699999999999999
Q ss_pred eecCCCeEEEEeccccch----hhhhccCcCCcceEEEEecCCCCeEEEeeCCCcEEEEEecCC--cceeEEEeccccee
Q psy18231 433 TCSTDECLRLFDKATGEL----LEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDS--SQISTLIHSVGKAV 506 (540)
Q Consensus 433 ~~~~dg~i~i~d~~~~~~----~~~~~~~~~~v~~~~~~~s~~~~~l~s~s~dg~i~iwd~~~~--~~~~~~~~~~~~~~ 506 (540)
+.+.|.++.+|....... ....+.|+.-|+.. .|+|++.+++|+|.|.+|++|...+. +.+..+....+..+
T Consensus 589 svsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdc--sW~pde~~FaTaSRDK~VkVW~~~~~~d~~i~~~a~~~~~~a 666 (764)
T KOG1063|consen 589 SVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDC--SWSPDEKYFATASRDKKVKVWEEPDLRDKYISRFACLKFSLA 666 (764)
T ss_pred EeecCceEEeeeeecccchhhhhccccccceEEEEc--ccCcccceeEEecCCceEEEEeccCchhhhhhhhchhccCCc
Confidence 999999999998754321 23467888877765 89999999999999999999998877 55544333368899
Q ss_pred eeEEEEcCC----Cc-EEEeec-CCeeEEEEcc
Q psy18231 507 VNSLCSHPT----RK-HIMSAC-GNNVKLWTAE 533 (540)
Q Consensus 507 v~~l~~s~d----~~-~l~s~~-d~~i~iw~~~ 533 (540)
|+.++|.|- .. .++.|- .|.|.+|+..
T Consensus 667 VTAv~~~~~~~~e~~~~vavGle~GeI~l~~~~ 699 (764)
T KOG1063|consen 667 VTAVAYLPVDHNEKGDVVAVGLEKGEIVLWRRK 699 (764)
T ss_pred eeeEEeeccccccccceEEEEecccEEEEEecc
Confidence 999999763 22 455555 9999999976
|
|
| >KOG0308|consensus | Back alignment and domain information |
|---|
Probab=99.96 E-value=3e-28 Score=224.47 Aligned_cols=240 Identities=24% Similarity=0.395 Sum_probs=207.3
Q ss_pred CCccee---EEEEe-eCCCeEEEeeCCCeEEEEEcCCCc------eeEeccccCCceeEEEECCCCCEEEEecCCCcEEE
Q psy18231 205 HAHEVN---DATAA-CDSSQIASGASDKSVILWEVTTGQ------PVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMM 274 (540)
Q Consensus 205 h~~~v~---~l~~s-p~~~~l~s~s~dg~i~iwd~~~~~------~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~i 274 (540)
|...|. .+..+ |.+++|+||+.||.|++|++.... .+..++.|.+.|+.+....+++.|+++|.|-+|++
T Consensus 20 n~~~v~~~~~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~ 99 (735)
T KOG0308|consen 20 NRNGVNITKALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKV 99 (735)
T ss_pred ccccccchhhccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEE
Confidence 444444 34444 367789999999999999986542 36678899999999999999999999999999999
Q ss_pred EEecCCCCCCcchhhhhHhhhhcCCceeEEEEeecccccccccCceeeEEEeeeecccccceeeeeeccceeEEEeeccc
Q psy18231 275 WDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLG 354 (540)
Q Consensus 275 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (540)
|+......
T Consensus 100 W~~~~~~~------------------------------------------------------------------------ 107 (735)
T KOG0308|consen 100 WNAHKDNT------------------------------------------------------------------------ 107 (735)
T ss_pred eecccCcc------------------------------------------------------------------------
Confidence 99876531
Q ss_pred ceecccccccccccchhhhhhcccccEEEEEe-cC--CeeEeeeCCCeEEEEeCCCC--ceEEeee---------C--Cc
Q psy18231 355 STQIGDVTPISIHNSCFQALKEARDSITSVHV-SD--HEILTASLDCRIRRYDIRTG--NLVTDYV---------G--EP 418 (540)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~-~~--~~l~~~~~dg~i~iwd~~~~--~~~~~~~---------~--~~ 418 (540)
.+...+..|.+.|.|+++ -+ ..+++|+.|+.|.+||++++ +.+.++. + .+
T Consensus 108 --------------~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~s 173 (735)
T KOG0308|consen 108 --------------FCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDS 173 (735)
T ss_pred --------------hhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccc
Confidence 145588899999999999 44 78999999999999999987 3333322 2 47
Q ss_pred eEEEEEecCCcEEEeecCCCeEEEEeccccchhhhhccCcCCcceEEEEecCCCCeEEEeeCCCcEEEEEecCCcceeEE
Q psy18231 419 IVDACFTRDCQCILTCSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTL 498 (540)
Q Consensus 419 i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~ 498 (540)
|++++..+.|..+++|+.++.+++||-++++.+..+++|+..|..+ ..++||..++++|.||+|++||+...+++.++
T Consensus 174 iYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~l--l~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~ 251 (735)
T KOG0308|consen 174 IYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVL--LVNDDGTRLLSASSDGTIRLWDLGQQRCLATY 251 (735)
T ss_pred eeeeecCCcceEEEecCcccceEEeccccccceeeeeccccceEEE--EEcCCCCeEeecCCCceEEeeeccccceeeeE
Confidence 9999999999999999999999999999999999999999999988 78999999999999999999999999999999
Q ss_pred EecccceeeeEEEEcCCCcEEEeec-CCeeEEEEccc
Q psy18231 499 IHSVGKAVVNSLCSHPTRKHIMSAC-GNNVKLWTAEE 534 (540)
Q Consensus 499 ~~~~~~~~v~~l~~s~d~~~l~s~~-d~~i~iw~~~~ 534 (540)
. .|...|.++..+|+-..+.+|+ ||.|..=|+.+
T Consensus 252 ~--vH~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n 286 (735)
T KOG0308|consen 252 I--VHKEGVWALQSSPSFTHVYSGGRDGNIYRTDLRN 286 (735)
T ss_pred E--eccCceEEEeeCCCcceEEecCCCCcEEecccCC
Confidence 8 8999999999999999999999 99998877765
|
|
| >KOG0310|consensus | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.1e-27 Score=213.83 Aligned_cols=252 Identities=18% Similarity=0.313 Sum_probs=204.8
Q ss_pred eeeeecccccce---eeeeecCeEEEEeCCCCCEEEEeeCCCcEEEEcCCCCeeEEEeecCCcceeEEEEee-CCCeEEE
Q psy18231 148 SIRVYRPLTVNR---ELFVLSGLMHTRFPVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAAC-DSSQIAS 223 (540)
Q Consensus 148 ~i~~~~~~~~~~---~~~h~~~v~~v~~spdg~~lat~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp-~~~~l~s 223 (540)
.+.+|...+... .....+.|.++.|-.||++||.|...|.|+|+|..+...++.+.+|+.+|..+.|+| ++..+++
T Consensus 49 rvqly~~~~~~~~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s 128 (487)
T KOG0310|consen 49 RVQLYSSVTRSVRKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVS 128 (487)
T ss_pred EEEEEecchhhhhhhHHhhccceeEEEeecCCeEEEccCCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEe
Confidence 345555544321 223567899999999999999999999999999877777888999999999999999 5566888
Q ss_pred eeCCCeEEEEEcCCCceeEeccccCCceeEEEECC-CCCEEEEecCCCcEEEEEecCCCCCCcchhhhhHhhhhcCCcee
Q psy18231 224 GASDKSVILWEVTTGQPVRRWREHASKVTCVKFNE-DSSVVISGSQDNTVMMWDVKSRSHHPIQVRCLNEALKEARDSIT 302 (540)
Q Consensus 224 ~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (540)
|+.|+.+++||+.+......+.+|++.|.|.+|+| ++..++|||.||.|++||++.... .+
T Consensus 129 ~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~-~v----------------- 190 (487)
T KOG0310|consen 129 GSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTS-RV----------------- 190 (487)
T ss_pred cCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCc-ee-----------------
Confidence 99999999999999887668899999999999999 456899999999999999987641 00
Q ss_pred EEEEeecccccccccCceeeEEEeeeecccccceeeeeeccceeEEEeecccceecccccccccccchhhhhhcccccEE
Q psy18231 303 SVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEARDSIT 382 (540)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 382 (540)
..-.|..+|.
T Consensus 191 ----------------------------------------------------------------------~elnhg~pVe 200 (487)
T KOG0310|consen 191 ----------------------------------------------------------------------VELNHGCPVE 200 (487)
T ss_pred ----------------------------------------------------------------------EEecCCCcee
Confidence 1235778899
Q ss_pred EEEecC-CeeEeeeCCCeEEEEeCCCCce-EEeee--CCceEEEEEecCCcEEEeecCCCeEEEEeccccchhhhhccCc
Q psy18231 383 SVHVSD-HEILTASLDCRIRRYDIRTGNL-VTDYV--GEPIVDACFTRDCQCILTCSTDECLRLFDKATGELLEEYKGHK 458 (540)
Q Consensus 383 ~l~~~~-~~l~~~~~dg~i~iwd~~~~~~-~~~~~--~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~ 458 (540)
.+.+-| ..+++......+++||+-+|.. +.... ...|+|+.+..++..|++++-|+.|++||+.+.+.+..++- .
T Consensus 201 ~vl~lpsgs~iasAgGn~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~~-~ 279 (487)
T KOG0310|consen 201 SVLALPSGSLIASAGGNSVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWKY-P 279 (487)
T ss_pred eEEEcCCCCEEEEcCCCeEEEEEecCCceehhhhhcccceEEEEEeecCCceEeecccccceEEEEccceEEEEeeec-c
Confidence 998887 3444444567899999996644 43333 36899999999999999999999999999988888887763 4
Q ss_pred CCcceEEEEecCCCCeEEEeeCCCcEEEEEec
Q psy18231 459 SGDFRIECCLDSKDSQIFCGSSDGKIYKWQLV 490 (540)
Q Consensus 459 ~~v~~~~~~~s~~~~~l~s~s~dg~i~iwd~~ 490 (540)
++|.++ +.+|+++.++.|..||.+.+=+..
T Consensus 280 ~pvLsi--avs~dd~t~viGmsnGlv~~rr~~ 309 (487)
T KOG0310|consen 280 GPVLSI--AVSPDDQTVVIGMSNGLVSIRRRE 309 (487)
T ss_pred cceeeE--EecCCCceEEEecccceeeeehhh
Confidence 567666 899999999999999998877543
|
|
| >KOG0646|consensus | Back alignment and domain information |
|---|
Probab=99.96 E-value=1e-27 Score=212.74 Aligned_cols=286 Identities=19% Similarity=0.275 Sum_probs=228.2
Q ss_pred ccceeeeecccccceeeeeecC-----eEEEEeCCCCCEEEEeeC-CCcEEEEcCCCCeeEEEeecCCcceeEEEEeeCC
Q psy18231 145 KEWSIRVYRPLTVNRELFVLSG-----LMHTRFPVDGSYCLTCGS-DKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDS 218 (540)
Q Consensus 145 ~~~~i~~~~~~~~~~~~~h~~~-----v~~v~~spdg~~lat~~~-dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~ 218 (540)
...++.+|++.++.....-.+. -..-+. .+.+++++.. ...+.+|.+..........--.++|.+++-+|+|
T Consensus 16 d~~~~~~~dl~TGt~~~~ykg~~~a~~~sl~~l--~~~yllsaq~~rp~l~vw~i~k~~~~~q~~v~Pg~v~al~s~n~G 93 (476)
T KOG0646|consen 16 DPINCIVWDLRTGTSLLQYKGSYLAQAASLTAL--NNEYLLSAQLKRPLLHVWEILKKDQVVQYIVLPGPVHALASSNLG 93 (476)
T ss_pred CCcceeEEecCCCceeEEecCcccccchhhhhh--chhheeeecccCccccccccCchhhhhhhcccccceeeeecCCCc
Confidence 3455888998887644332222 011111 2356666643 5588999987665554333457889999999999
Q ss_pred CeEEEeeCCCeEEEEEcCCCceeEeccccCCceeEEEECCCCCEEEEecCCCcEEEEEecCCCCCCcchhhhhHhhhhcC
Q psy18231 219 SQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQVRCLNEALKEAR 298 (540)
Q Consensus 219 ~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 298 (540)
.+|+.|+..|.+.+|.+.+|..+..+.+|-..|+|+.|+.||.+|+|||.||.|.+|.+..--....
T Consensus 94 ~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~------------- 160 (476)
T KOG0646|consen 94 YFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADN------------- 160 (476)
T ss_pred eEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeeccccc-------------
Confidence 9999999999999999999999999999999999999999999999999999999999865321000
Q ss_pred CceeEEEEeecccccccccCceeeEEEeeeecccccceeeeeeccceeEEEeecccceecccccccccccchhhhhhccc
Q psy18231 299 DSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEAR 378 (540)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (540)
.....++..+..|.
T Consensus 161 ------------------------------------------------------------------~~~~~p~~~f~~Ht 174 (476)
T KOG0646|consen 161 ------------------------------------------------------------------DHSVKPLHIFSDHT 174 (476)
T ss_pred ------------------------------------------------------------------CCCccceeeeccCc
Confidence 00122344778899
Q ss_pred ccEEEEEecC----CeeEeeeCCCeEEEEeCCCCceEEeee-CCceEEEEEecCCcEEEeecCCCeEEEEeccccc----
Q psy18231 379 DSITSVHVSD----HEILTASLDCRIRRYDIRTGNLVTDYV-GEPIVDACFTRDCQCILTCSTDECLRLFDKATGE---- 449 (540)
Q Consensus 379 ~~v~~l~~~~----~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~---- 449 (540)
-+|+++...+ .++++++.|.++++||+..+.++.++. ...+.+++.+|.+..+++|+.+|.|.+.++....
T Consensus 175 lsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~ 254 (476)
T KOG0646|consen 175 LSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITFPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSA 254 (476)
T ss_pred ceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEecCCcceeEEEcccccEEEecCCcceEEeeehhcCCcccc
Confidence 9999998875 789999999999999999999988876 4789999999999999999999999998875422
Q ss_pred ------------hhhhhccCcC--CcceEEEEecCCCCeEEEeeCCCcEEEEEecCCcceeEEEecccceeeeEEEEcCC
Q psy18231 450 ------------LLEEYKGHKS--GDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPT 515 (540)
Q Consensus 450 ------------~~~~~~~~~~--~v~~~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d 515 (540)
.+..+.+|.+ .|+++ +.+-||..|++|+.||.|+|||+.+.++++++. ...++|+.+.+.|=
T Consensus 255 ~v~~k~~~~~~t~~~~~~Gh~~~~~ITcL--ais~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~--~~kgpVtnL~i~~~ 330 (476)
T KOG0646|consen 255 GVNQKGRHEENTQINVLVGHENESAITCL--AISTDGTLLLSGDEDGKVCVWDIYSKQCIRTLQ--TSKGPVTNLQINPL 330 (476)
T ss_pred cccccccccccceeeeeccccCCcceeEE--EEecCccEEEeeCCCCCEEEEecchHHHHHHHh--hhccccceeEeecc
Confidence 2456778888 88888 888999999999999999999999999999886 46788999988554
|
|
| >KOG1273|consensus | Back alignment and domain information |
|---|
Probab=99.96 E-value=7.1e-27 Score=197.12 Aligned_cols=281 Identities=17% Similarity=0.287 Sum_probs=215.0
Q ss_pred eEEEEeCCCCCEEEEeeCCCcEEEEcCCCCeeEEEeecCCcceeEEEEeeCCCeEEEeeCCCeEEEEEcCCCceeEeccc
Q psy18231 167 LMHTRFPVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPVRRWRE 246 (540)
Q Consensus 167 v~~v~~spdg~~lat~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~ 246 (540)
..|+.|++.|.+||+|..||.|.|||..|...-+.+.+|..+|++++||+||+.|+|+|.|..|.+||+..|.+++.+.
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rir- 104 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIR- 104 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEE-
Confidence 7899999999999999999999999999999888999999999999999999999999999999999999999988875
Q ss_pred cCCceeEEEECCCC-CEEEEecCCCcEEEEEecCCCCCCcchhhhhHhhhhcCCceeEEEEeecccccccccCceeeEEE
Q psy18231 247 HASKVTCVKFNEDS-SVVISGSQDNTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHLSNGLLTKLVF 325 (540)
Q Consensus 247 h~~~v~~~~~~~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (540)
..++|+...|+|.. +..+..-.+..-.+-++...+...+. .....
T Consensus 105 f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp----------------------~d~d~------------ 150 (405)
T KOG1273|consen 105 FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLP----------------------KDDDG------------ 150 (405)
T ss_pred ccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeecc----------------------CCCcc------------
Confidence 57899999999943 33333333333444444433210000 00000
Q ss_pred eeeecccccceeeeeeccceeEEEeecccceecccccccccccchhhhhhcccccEEEEEecC--CeeEeeeCCCeEEEE
Q psy18231 326 AFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEARDSITSVHVSD--HEILTASLDCRIRRY 403 (540)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~--~~l~~~~~dg~i~iw 403 (540)
..+....+..|++ +++++|...|.+.++
T Consensus 151 --------------------------------------------------dln~sas~~~fdr~g~yIitGtsKGkllv~ 180 (405)
T KOG1273|consen 151 --------------------------------------------------DLNSSASHGVFDRRGKYIITGTSKGKLLVY 180 (405)
T ss_pred --------------------------------------------------ccccccccccccCCCCEEEEecCcceEEEE
Confidence 0000111123444 899999999999999
Q ss_pred eCCCCceEEeeeC---CceEEEEEecCCcEEEeecCCCeEEEEeccc-------c--chhhhhccCcCCcceEEEEecCC
Q psy18231 404 DIRTGNLVTDYVG---EPIVDACFTRDCQCILTCSTDECLRLFDKAT-------G--ELLEEYKGHKSGDFRIECCLDSK 471 (540)
Q Consensus 404 d~~~~~~~~~~~~---~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~-------~--~~~~~~~~~~~~v~~~~~~~s~~ 471 (540)
|..+.+++..+.- ..|..+.++..|+.|+.-+.|..|+.|+++. + ++.+.++.--+...--.++||.+
T Consensus 181 ~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~d 260 (405)
T KOG1273|consen 181 DAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGD 260 (405)
T ss_pred ecchheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCC
Confidence 9999999877753 5788999999999999999999999999762 1 22233332222222223589999
Q ss_pred CCeEEEee-CCCcEEEEEecCCcceeEEEecccc-eeeeEEEEcCCCcEEEeecCCeeEEEEccc
Q psy18231 472 DSQIFCGS-SDGKIYKWQLVDSSQISTLIHSVGK-AVVNSLCSHPTRKHIMSACGNNVKLWTAEE 534 (540)
Q Consensus 472 ~~~l~s~s-~dg~i~iwd~~~~~~~~~~~~~~~~-~~v~~l~~s~d~~~l~s~~d~~i~iw~~~~ 534 (540)
|.|++.++ .-..++||.-..|.+++.+. +.. .....+.|+|-...+++-..|.+++|....
T Consensus 261 geYv~a~s~~aHaLYIWE~~~GsLVKILh--G~kgE~l~DV~whp~rp~i~si~sg~v~iw~~~~ 323 (405)
T KOG1273|consen 261 GEYVCAGSARAHALYIWEKSIGSLVKILH--GTKGEELLDVNWHPVRPIIASIASGVVYIWAVVQ 323 (405)
T ss_pred ccEEEeccccceeEEEEecCCcceeeeec--CCchhheeecccccceeeeeeccCCceEEEEeec
Confidence 99988776 44579999999999999998 555 667889999998888888899999998753
|
|
| >KOG0301|consensus | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.9e-27 Score=220.83 Aligned_cols=252 Identities=19% Similarity=0.286 Sum_probs=213.9
Q ss_pred hhhcccccceeeeecccccce-----eeeeecCeEE-EEeCC-CCCEEEEeeCCCcEEEEcCCCCeeEEEeecCCcceeE
Q psy18231 139 ILYELPKEWSIRVYRPLTVNR-----ELFVLSGLMH-TRFPV-DGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVND 211 (540)
Q Consensus 139 ~~~~~~~~~~i~~~~~~~~~~-----~~~h~~~v~~-v~~sp-dg~~lat~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~ 211 (540)
.+.+.++++++++|....... ..+|.+-|.+ ++|-+ ++-+|++|+.|++|.+|...+..++.++++|...|.+
T Consensus 27 ~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~~P~~~LkgH~snVC~ 106 (745)
T KOG0301|consen 27 CIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQAEPLYTLKGHKSNVCS 106 (745)
T ss_pred EEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccceEEEEecCCCCchhhhhccccceee
Confidence 345678899999999865432 2346677777 88875 5556999999999999999999999999999999999
Q ss_pred EEEeeCCCeEEEeeCCCeEEEEEcCCCceeEeccccCCceeEEEECCCCCEEEEecCCCcEEEEEecCCCCCCcchhhhh
Q psy18231 212 ATAACDSSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQVRCLN 291 (540)
Q Consensus 212 l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 291 (540)
++...++. +++||.|.++++|- .+++...+++|+..|+++.+.|++ .++|||.|++|++|.-.+
T Consensus 107 ls~~~~~~-~iSgSWD~TakvW~--~~~l~~~l~gH~asVWAv~~l~e~-~~vTgsaDKtIklWk~~~------------ 170 (745)
T KOG0301|consen 107 LSIGEDGT-LISGSWDSTAKVWR--IGELVYSLQGHTASVWAVASLPEN-TYVTGSADKTIKLWKGGT------------ 170 (745)
T ss_pred eecCCcCc-eEecccccceEEec--chhhhcccCCcchheeeeeecCCC-cEEeccCcceeeeccCCc------------
Confidence 99887776 99999999999996 566777799999999999999987 799999999999997532
Q ss_pred HhhhhcCCceeEEEEeecccccccccCceeeEEEeeeecccccceeeeeeccceeEEEeecccceecccccccccccchh
Q psy18231 292 EALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCF 371 (540)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (540)
.+
T Consensus 171 ------------------------------------------------------------------------------~l 172 (745)
T KOG0301|consen 171 ------------------------------------------------------------------------------LL 172 (745)
T ss_pred ------------------------------------------------------------------------------hh
Confidence 34
Q ss_pred hhhhcccccEEEEEecC-CeeEeeeCCCeEEEEeCCCCceEEeeeCC--ceEEEEEecCCcEEEeecCCCeEEEEecccc
Q psy18231 372 QALKEARDSITSVHVSD-HEILTASLDCRIRRYDIRTGNLVTDYVGE--PIVDACFTRDCQCILTCSTDECLRLFDKATG 448 (540)
Q Consensus 372 ~~~~~~~~~v~~l~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~--~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~ 448 (540)
+++.+|.+.|..+++-+ ..+++++.||.|++|++ +++++.++++| -+++++..+++..++++++|++++||+..
T Consensus 173 ~tf~gHtD~VRgL~vl~~~~flScsNDg~Ir~w~~-~ge~l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~-- 249 (745)
T KOG0301|consen 173 KTFSGHTDCVRGLAVLDDSHFLSCSNDGSIRLWDL-DGEVLLEMHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD-- 249 (745)
T ss_pred hhhccchhheeeeEEecCCCeEeecCCceEEEEec-cCceeeeeeccceEEEEEEecCCCCeEEEecCCceEEEeecC--
Confidence 48889999999999998 69999999999999999 78899999885 58999988899999999999999999976
Q ss_pred chhhhhccCcCCcceEEEEecCCCCeEEEeeCCCcEEEEEec
Q psy18231 449 ELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLV 490 (540)
Q Consensus 449 ~~~~~~~~~~~~v~~~~~~~s~~~~~l~s~s~dg~i~iwd~~ 490 (540)
++.+.+......+++.. +-++| -+++|+.||.||||...
T Consensus 250 e~~q~I~lPttsiWsa~--~L~Ng-DIvvg~SDG~VrVfT~~ 288 (745)
T KOG0301|consen 250 ECVQVITLPTTSIWSAK--VLLNG-DIVVGGSDGRVRVFTVD 288 (745)
T ss_pred ceEEEEecCccceEEEE--EeeCC-CEEEeccCceEEEEEec
Confidence 66777776666778774 44444 38899999999999865
|
|
| >KOG0639|consensus | Back alignment and domain information |
|---|
Probab=99.96 E-value=8.8e-28 Score=214.71 Aligned_cols=278 Identities=13% Similarity=0.204 Sum_probs=234.3
Q ss_pred eeeeecCeEEEEeCCCCCEEEEeeCCCcEEEEcCCCC---eeEEEeec--CCcceeEEEEeeCCCeEEEeeCCCeEEEEE
Q psy18231 160 ELFVLSGLMHTRFPVDGSYCLTCGSDKKIKLWNPYRN---LLLKTYGG--HAHEVNDATAACDSSQIASGASDKSVILWE 234 (540)
Q Consensus 160 ~~~h~~~v~~v~~spdg~~lat~~~dg~i~iwd~~~~---~~~~~~~~--h~~~v~~l~~sp~~~~l~s~s~dg~i~iwd 234 (540)
.+.|.+-|.++.+|...+++.||+ .|.|+|||+... .++..+.. ....|.++..+|||+.|++|+.-.++.|||
T Consensus 415 tL~HGEvVcAvtIS~~trhVyTgG-kgcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWD 493 (705)
T KOG0639|consen 415 TLAHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWD 493 (705)
T ss_pred hhccCcEEEEEEecCCcceeEecC-CCeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceeeeee
Confidence 355888999999999999999998 699999998643 33334422 457789999999999999999999999999
Q ss_pred cCCCcee--EeccccCCceeEEEECCCCCEEEEecCCCcEEEEEecCCCCCCcchhhhhHhhhhcCCceeEEEEeecccc
Q psy18231 235 VTTGQPV--RRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTK 312 (540)
Q Consensus 235 ~~~~~~~--~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (540)
+....+. ..+....-..++++.+||.+..+++..||.|.|||+.+..
T Consensus 494 LAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~------------------------------- 542 (705)
T KOG0639|consen 494 LAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQT------------------------------- 542 (705)
T ss_pred ccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccce-------------------------------
Confidence 9766443 2333334567789999999999999999999999998764
Q ss_pred cccccCceeeEEEeeeecccccceeeeeeccceeEEEeecccceecccccccccccchhhhhhcccccEEEEEecC--Ce
Q psy18231 313 NHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEARDSITSVHVSD--HE 390 (540)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~--~~ 390 (540)
.++.+.+|.+.+.||.+++ ..
T Consensus 543 ---------------------------------------------------------~VrqfqGhtDGascIdis~dGtk 565 (705)
T KOG0639|consen 543 ---------------------------------------------------------LVRQFQGHTDGASCIDISKDGTK 565 (705)
T ss_pred ---------------------------------------------------------eeecccCCCCCceeEEecCCCce
Confidence 2347889999999999996 88
Q ss_pred eEeeeCCCeEEEEeCCCCceEEeee-CCceEEEEEecCCcEEEeecCCCeEEEEeccccchhhhhccCcCCcceEEEEec
Q psy18231 391 ILTASLDCRIRRYDIRTGNLVTDYV-GEPIVDACFTRDCQCILTCSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLD 469 (540)
Q Consensus 391 l~~~~~dg~i~iwd~~~~~~~~~~~-~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~s 469 (540)
|.+|+-|.++|-||+++++.+.... ...|.++...|++.+|++|-.++.+.|.... +.....+.-|...|.++ .|.
T Consensus 566 lWTGGlDntvRcWDlregrqlqqhdF~SQIfSLg~cP~~dWlavGMens~vevlh~s-kp~kyqlhlheScVLSl--KFa 642 (705)
T KOG0639|consen 566 LWTGGLDNTVRCWDLREGRQLQQHDFSSQIFSLGYCPTGDWLAVGMENSNVEVLHTS-KPEKYQLHLHESCVLSL--KFA 642 (705)
T ss_pred eecCCCccceeehhhhhhhhhhhhhhhhhheecccCCCccceeeecccCcEEEEecC-CccceeecccccEEEEE--Eec
Confidence 9999999999999999998776655 3689999999999999999999999998864 33445566677777666 789
Q ss_pred CCCCeEEEeeCCCcEEEEEecCCcceeEEEecccceeeeEEEEcCCCcEEEeec-CCeeEEEEc
Q psy18231 470 SKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC-GNNVKLWTA 532 (540)
Q Consensus 470 ~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~-d~~i~iw~~ 532 (540)
+.|+|+++.+.|+.+..|...-|..+...+ ..++|.++.+|.|.++++||+ |..-.+|.+
T Consensus 643 ~cGkwfvStGkDnlLnawrtPyGasiFqsk---E~SsVlsCDIS~ddkyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 643 YCGKWFVSTGKDNLLNAWRTPYGASIFQSK---ESSSVLSCDISFDDKYIVTGSGDKKATVYEV 703 (705)
T ss_pred ccCceeeecCchhhhhhccCccccceeecc---ccCcceeeeeccCceEEEecCCCcceEEEEE
Confidence 999999999999999999999898888875 678899999999999999999 988888876
|
|
| >KOG0264|consensus | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.9e-27 Score=209.54 Aligned_cols=244 Identities=18% Similarity=0.287 Sum_probs=198.5
Q ss_pred eeeeeecCeEEEEeCCCC-CEEEEeeCCCcEEEEcCCCC----------eeEEEeecCCcceeEEEEeeC-CCeEEEeeC
Q psy18231 159 RELFVLSGLMHTRFPVDG-SYCLTCGSDKKIKLWNPYRN----------LLLKTYGGHAHEVNDATAACD-SSQIASGAS 226 (540)
Q Consensus 159 ~~~~h~~~v~~v~~spdg-~~lat~~~dg~i~iwd~~~~----------~~~~~~~~h~~~v~~l~~sp~-~~~l~s~s~ 226 (540)
..+.|.+.|+.+++-|.. ..+|+.+..+.|.|||..+- .+-.++.+|...=++++|++. .-.|++++.
T Consensus 119 ~~i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~ 198 (422)
T KOG0264|consen 119 QKINHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSD 198 (422)
T ss_pred EeccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccC
Confidence 456799999999999955 56677888999999997542 223378899998899999984 447999999
Q ss_pred CCeEEEEEcCCCc-------eeEeccccCCceeEEEECC-CCCEEEEecCCCcEEEEEecCCCCCCcchhhhhHhhhhcC
Q psy18231 227 DKSVILWEVTTGQ-------PVRRWREHASKVTCVKFNE-DSSVVISGSQDNTVMMWDVKSRSHHPIQVRCLNEALKEAR 298 (540)
Q Consensus 227 dg~i~iwd~~~~~-------~~~~~~~h~~~v~~~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 298 (540)
|++|++||+.... +...+.+|.+.|..++|++ +..++++++.|+.+.|||++++...+
T Consensus 199 d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~-------------- 264 (422)
T KOG0264|consen 199 DHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKP-------------- 264 (422)
T ss_pred CCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCC--------------
Confidence 9999999997542 3456789999999999999 66789999999999999999742211
Q ss_pred CceeEEEEeecccccccccCceeeEEEeeeecccccceeeeeeccceeEEEeecccceecccccccccccchhhhhhccc
Q psy18231 299 DSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEAR 378 (540)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (540)
.....+|.
T Consensus 265 ------------------------------------------------------------------------~~~~~ah~ 272 (422)
T KOG0264|consen 265 ------------------------------------------------------------------------SHSVKAHS 272 (422)
T ss_pred ------------------------------------------------------------------------cccccccC
Confidence 22667899
Q ss_pred ccEEEEEecC---CeeEeeeCCCeEEEEeCCCCc-eEEeeeC--CceEEEEEecC-CcEEEeecCCCeEEEEeccccc--
Q psy18231 379 DSITSVHVSD---HEILTASLDCRIRRYDIRTGN-LVTDYVG--EPIVDACFTRD-CQCILTCSTDECLRLFDKATGE-- 449 (540)
Q Consensus 379 ~~v~~l~~~~---~~l~~~~~dg~i~iwd~~~~~-~~~~~~~--~~i~~~~~sp~-~~~l~~~~~dg~i~i~d~~~~~-- 449 (540)
+.|.|++|+| ..||+|+.|++|.+||+++.+ ++..+.+ ..|.++.|||. ...||+++.|+.+.+||+..-.
T Consensus 273 ~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~e 352 (422)
T KOG0264|consen 273 AEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEE 352 (422)
T ss_pred CceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccc
Confidence 9999999999 789999999999999999764 4566655 57999999995 5678899999999999986421
Q ss_pred ------------hhhhhccCcCCcceEEEEecCCCCe-EEEeeCCCcEEEEEec
Q psy18231 450 ------------LLEEYKGHKSGDFRIECCLDSKDSQ-IFCGSSDGKIYKWQLV 490 (540)
Q Consensus 450 ------------~~~~~~~~~~~v~~~~~~~s~~~~~-l~s~s~dg~i~iwd~~ 490 (540)
++..-.||...|... .|+|+..+ |++.++|+.+.||+..
T Consensus 353 q~~eda~dgppEllF~HgGH~~kV~Df--sWnp~ePW~I~SvaeDN~LqIW~~s 404 (422)
T KOG0264|consen 353 QSPEDAEDGPPELLFIHGGHTAKVSDF--SWNPNEPWTIASVAEDNILQIWQMA 404 (422)
T ss_pred cChhhhccCCcceeEEecCcccccccc--cCCCCCCeEEEEecCCceEEEeecc
Confidence 233446788888776 89999887 8889999999999975
|
|
| >KOG4283|consensus | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.5e-26 Score=192.06 Aligned_cols=281 Identities=19% Similarity=0.274 Sum_probs=221.9
Q ss_pred eeeeecCeEEEEeCC-CCCEEEEeeCCCcEEEEcCCCCee----------EE-----EeecCCcceeEEEEee-CCCeEE
Q psy18231 160 ELFVLSGLMHTRFPV-DGSYCLTCGSDKKIKLWNPYRNLL----------LK-----TYGGHAHEVNDATAAC-DSSQIA 222 (540)
Q Consensus 160 ~~~h~~~v~~v~~sp-dg~~lat~~~dg~i~iwd~~~~~~----------~~-----~~~~h~~~v~~l~~sp-~~~~l~ 222 (540)
...|.+.|+++...+ .|+|+++|+.||.|.+||+++... +. .-.+|+-.|.++.|.| |...+.
T Consensus 39 ~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFt 118 (397)
T KOG4283|consen 39 VRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFT 118 (397)
T ss_pred eccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceee
Confidence 456889999999988 799999999999999999875420 11 1146888999999999 777888
Q ss_pred EeeCCCeEEEEEcCCCceeEeccccCCceeEEEECCC---CCEEEEecCCCcEEEEEecCCCCCCcchhhhhHhhhhcCC
Q psy18231 223 SGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNED---SSVVISGSQDNTVMMWDVKSRSHHPIQVRCLNEALKEARD 299 (540)
Q Consensus 223 s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~---~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 299 (540)
+++.|.+++|||.++.+....++ -.+.|++-+++|- -.++++|..|-.|++-|+.++.
T Consensus 119 ssSFDhtlKVWDtnTlQ~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs------------------ 179 (397)
T KOG4283|consen 119 SSSFDHTLKVWDTNTLQEAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGS------------------ 179 (397)
T ss_pred cccccceEEEeecccceeeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCc------------------
Confidence 99999999999999988877774 4678899999883 3478888888999999999886
Q ss_pred ceeEEEEeecccccccccCceeeEEEeeeecccccceeeeeeccceeEEEeecccceecccccccccccchhhhhhcccc
Q psy18231 300 SITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEARD 379 (540)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (540)
+.+.+.+|.+
T Consensus 180 ----------------------------------------------------------------------~sH~LsGHr~ 189 (397)
T KOG4283|consen 180 ----------------------------------------------------------------------FSHTLSGHRD 189 (397)
T ss_pred ----------------------------------------------------------------------ceeeeccccC
Confidence 2347889999
Q ss_pred cEEEEEecC---CeeEeeeCCCeEEEEeCCCC-ceEEeee----------------CCceEEEEEecCCcEEEeecCCCe
Q psy18231 380 SITSVHVSD---HEILTASLDCRIRRYDIRTG-NLVTDYV----------------GEPIVDACFTRDCQCILTCSTDEC 439 (540)
Q Consensus 380 ~v~~l~~~~---~~l~~~~~dg~i~iwd~~~~-~~~~~~~----------------~~~i~~~~~sp~~~~l~~~~~dg~ 439 (540)
.|.++.|+| -.|++|+.||.|++||++.. .+...+. .+.+..++|+.++.++++.+.|..
T Consensus 190 ~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r 269 (397)
T KOG4283|consen 190 GVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDR 269 (397)
T ss_pred ceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccc
Confidence 999999999 45889999999999999854 2222221 246999999999999999999999
Q ss_pred EEEEeccccchh-hhh--ccCcCCcc-eEEEEecCCCCeEEEeeCCCcEEEEEecCCcceeEEEecccceeeeEEEEcCC
Q psy18231 440 LRLFDKATGELL-EEY--KGHKSGDF-RIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPT 515 (540)
Q Consensus 440 i~i~d~~~~~~~-~~~--~~~~~~v~-~~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d 515 (540)
+++|+..+|+.. +.+ ..|..... .+... +.+...++---.++.+.++++-+++.+..+. .|...|.+.++.|+
T Consensus 270 ~r~wn~~~G~ntl~~~g~~~~n~~~~~~~~~~-~~~s~vfv~~p~~~~lall~~~sgs~ir~l~--~h~k~i~c~~~~~~ 346 (397)
T KOG4283|consen 270 IRVWNMESGRNTLREFGPIIHNQTTSFAVHIQ-SMDSDVFVLFPNDGSLALLNLLEGSFVRRLS--THLKRINCAAYRPD 346 (397)
T ss_pred eEEeecccCcccccccccccccccccceEEEe-ecccceEEEEecCCeEEEEEccCceEEEeee--cccceeeEEeecCc
Confidence 999999888542 111 11221110 11111 2233344444466899999999999999999 88999999999999
Q ss_pred CcEEEeec-CCeeEEEEc
Q psy18231 516 RKHIMSAC-GNNVKLWTA 532 (540)
Q Consensus 516 ~~~l~s~~-d~~i~iw~~ 532 (540)
-+...+++ |+.|..|.+
T Consensus 347 fq~~~tg~~d~ni~~w~p 364 (397)
T KOG4283|consen 347 FEQCFTGDMNGNIYMWSP 364 (397)
T ss_pred hhhhhccccCCccccccc
Confidence 99999999 999999986
|
|
| >KOG1274|consensus | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.3e-26 Score=220.38 Aligned_cols=267 Identities=16% Similarity=0.243 Sum_probs=221.9
Q ss_pred eeeecCeEEEEeCCCCCEEEEeeCCCcEEEEcCCCC-eeEEEeecCCcceeEEEEeeCCCeEEEeeCCCeEEEEEcCCCc
Q psy18231 161 LFVLSGLMHTRFPVDGSYCLTCGSDKKIKLWNPYRN-LLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQ 239 (540)
Q Consensus 161 ~~h~~~v~~v~~spdg~~lat~~~dg~i~iwd~~~~-~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~ 239 (540)
..|+...+.++|.|+|++|.+++.||.|++|+.... +...++.-+...|.+++-. +.+|++|+.+++|.+|.+.+++
T Consensus 10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~--s~~f~~~s~~~tv~~y~fps~~ 87 (933)
T KOG1274|consen 10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACY--SNHFLTGSEQNTVLRYKFPSGE 87 (933)
T ss_pred hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEeec--ccceEEeeccceEEEeeCCCCC
Confidence 479999999999999999999999999999997665 4444454477788877764 5699999999999999999988
Q ss_pred eeEeccccCCceeEEEECCCCCEEEEecCCCcEEEEEecCCCCCCcchhhhhHhhhhcCCceeEEEEeecccccccccCc
Q psy18231 240 PVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHLSNGL 319 (540)
Q Consensus 240 ~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (540)
.-..+...+-++.+++|+.+|++++.||.|-.|++-++.+...
T Consensus 88 ~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~------------------------------------- 130 (933)
T KOG1274|consen 88 EDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQ------------------------------------- 130 (933)
T ss_pred ccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccch-------------------------------------
Confidence 7666666778999999999999999999999999999877651
Q ss_pred eeeEEEeeeecccccceeeeeeccceeEEEeecccceecccccccccccchhhhhhcccccEEEEEecC--CeeEeeeCC
Q psy18231 320 LTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEARDSITSVHVSD--HEILTASLD 397 (540)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~--~~l~~~~~d 397 (540)
...+.+|.++|.++.++| ++|++.+.|
T Consensus 131 ---------------------------------------------------~~~lrgh~apVl~l~~~p~~~fLAvss~d 159 (933)
T KOG1274|consen 131 ---------------------------------------------------EKVLRGHDAPVLQLSYDPKGNFLAVSSCD 159 (933)
T ss_pred ---------------------------------------------------heeecccCCceeeeeEcCCCCEEEEEecC
Confidence 226789999999999999 889999999
Q ss_pred CeEEEEeCCCCceEEeeeC----------CceEEEEEecCCcEEEeecCCCeEEEEeccccchhhhhccCcCCcceEEEE
Q psy18231 398 CRIRRYDIRTGNLVTDYVG----------EPIVDACFTRDCQCILTCSTDECLRLFDKATGELLEEYKGHKSGDFRIECC 467 (540)
Q Consensus 398 g~i~iwd~~~~~~~~~~~~----------~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~ 467 (540)
|.|++||+.++.+...+.+ ..+..++|+|+|..+++...|+.|++|+...++....+......-....+.
T Consensus 160 G~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~ 239 (933)
T KOG1274|consen 160 GKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQ 239 (933)
T ss_pred ceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceEEEE
Confidence 9999999999988776653 357788999998889999999999999999998877775433222123348
Q ss_pred ecCCCCeEEEeeCCCcEEEEEecCCcceeEEEecccceeeeEEEEcCCCcEEEeec
Q psy18231 468 LDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC 523 (540)
Q Consensus 468 ~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~ 523 (540)
|+|+|+|||+++.||.|.|||.++-+. . .....|.+++|.|+...+-.-.
T Consensus 240 wsPnG~YiAAs~~~g~I~vWnv~t~~~----~--~~~~~Vc~~aw~p~~n~it~~~ 289 (933)
T KOG1274|consen 240 WSPNGKYIAASTLDGQILVWNVDTHER----H--EFKRAVCCEAWKPNANAITLIT 289 (933)
T ss_pred EcCCCcEEeeeccCCcEEEEecccchh----c--cccceeEEEecCCCCCeeEEEe
Confidence 999999999999999999999987322 1 3456799999999987665443
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.7e-25 Score=209.32 Aligned_cols=266 Identities=13% Similarity=0.135 Sum_probs=200.8
Q ss_pred CEEEEeeCCCcEEEEcCCCCeeEEEeecCCcceeEEEEeeCCCeE-EEeeCCCeEEEEEcCCCceeEeccccCCceeEEE
Q psy18231 177 SYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQI-ASGASDKSVILWEVTTGQPVRRWREHASKVTCVK 255 (540)
Q Consensus 177 ~~lat~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l-~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~ 255 (540)
+.+++++.|+.|++||+.+++.+..+..+. .+.+++|+|+++.+ ++++.++.|++||..+++....+..+.. +..++
T Consensus 2 ~~~~s~~~d~~v~~~d~~t~~~~~~~~~~~-~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-~~~~~ 79 (300)
T TIGR03866 2 KAYVSNEKDNTISVIDTATLEVTRTFPVGQ-RPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPD-PELFA 79 (300)
T ss_pred cEEEEecCCCEEEEEECCCCceEEEEECCC-CCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCC-ccEEE
Confidence 567899999999999999999888888654 46789999999876 5677889999999999988777765443 56789
Q ss_pred ECCCCCEEEEe-cCCCcEEEEEecCCCCCCcchhhhhHhhhhcCCceeEEEEeecccccccccCceeeEEEeeeeccccc
Q psy18231 256 FNEDSSVVISG-SQDNTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNG 334 (540)
Q Consensus 256 ~~~~~~~l~s~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (540)
|+|+++.++++ +.|+.|++||+++.+. +.
T Consensus 80 ~~~~g~~l~~~~~~~~~l~~~d~~~~~~--~~------------------------------------------------ 109 (300)
T TIGR03866 80 LHPNGKILYIANEDDNLVTVIDIETRKV--LA------------------------------------------------ 109 (300)
T ss_pred ECCCCCEEEEEcCCCCeEEEEECCCCeE--Ee------------------------------------------------
Confidence 99999877654 5689999999976541 00
Q ss_pred ceeeeeeccceeEEEeecccceecccccccccccchhhhhhcccccEEEEEecC--CeeEeeeCCC-eEEEEeCCCCceE
Q psy18231 335 LLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEARDSITSVHVSD--HEILTASLDC-RIRRYDIRTGNLV 411 (540)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~--~~l~~~~~dg-~i~iwd~~~~~~~ 411 (540)
.+ .+...+.+++++| ..+++++.++ .+.+||.++++..
T Consensus 110 --------------------------------------~~-~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~ 150 (300)
T TIGR03866 110 --------------------------------------EI-PVGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIV 150 (300)
T ss_pred --------------------------------------Ee-eCCCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEE
Confidence 00 0112345678887 6777777664 5677899888776
Q ss_pred Eeee-CCceEEEEEecCCcEEEee-cCCCeEEEEeccccchhhhhccCc-----CCcceEEEEecCCCCeEEE-eeCCCc
Q psy18231 412 TDYV-GEPIVDACFTRDCQCILTC-STDECLRLFDKATGELLEEYKGHK-----SGDFRIECCLDSKDSQIFC-GSSDGK 483 (540)
Q Consensus 412 ~~~~-~~~i~~~~~sp~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~-----~~v~~~~~~~s~~~~~l~s-~s~dg~ 483 (540)
.... +.....++|+|++++|+++ ..++.|++||+.+++.+..+..+. .......++|+|++++++. .+.++.
T Consensus 151 ~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~ 230 (300)
T TIGR03866 151 DNVLVDQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANR 230 (300)
T ss_pred EEEEcCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCe
Confidence 5443 4566789999999988654 468999999999988766554321 2222334579999998554 455678
Q ss_pred EEEEEecCCcceeEEEecccceeeeEEEEcCCCcEEEee-c-CCeeEEEEccccc
Q psy18231 484 IYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSA-C-GNNVKLWTAEEDY 536 (540)
Q Consensus 484 i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~-~-d~~i~iw~~~~~~ 536 (540)
|.+||+.+++.+..+. +...+.+++|+|+|++|+++ + ++.|++||++++.
T Consensus 231 i~v~d~~~~~~~~~~~---~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~ 282 (300)
T TIGR03866 231 VAVVDAKTYEVLDYLL---VGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALK 282 (300)
T ss_pred EEEEECCCCcEEEEEE---eCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCc
Confidence 9999999888776654 34578999999999999886 4 8999999998754
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >KOG2335|consensus | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.9e-29 Score=218.92 Aligned_cols=107 Identities=46% Similarity=0.833 Sum_probs=104.0
Q ss_pred ceEEeccCCCCCHHHHHHHHHcCCCEEEeeeeecccccccchhhccccccCCCCCCEEEEEecCChhHHHHHHHHhcCCC
Q psy18231 17 LKHCDSTLWTSKLNFRQLVRSHNVDLCFTPMIIADSFIKSSKARNNEFSTSPEDTPLVVQFASNNHDDFVRATQYVAPHC 96 (540)
Q Consensus 17 ~~~~ap~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~ 96 (540)
..++|||+++|++|||+|+|+||++++|||||.|+.|++..+.+...+.+.++++|+|+|++|+||+.|++||+++.+++
T Consensus 20 ~ri~APMvd~S~l~fR~L~R~y~~~l~yTpMi~a~~fv~~ek~r~~~~st~~~D~PLIvQf~~ndp~~ll~Aa~lv~~y~ 99 (358)
T KOG2335|consen 20 KRIVAPMVDYSELAFRRLVRLYGADLLYTPMIHAKTFVHSEKYRDSELSTSPEDRPLIVQFGGNDPENLLKAARLVQPYC 99 (358)
T ss_pred ccccCCcccccHHHHHHHHHHhCCceEechHHHHHHHhcCccchhhhcccCCCCCceEEEEcCCCHHHHHHHHHHhhhhc
Confidence 34899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEeeccCCCceEEEeccccceecccc
Q psy18231 97 NGVDLNCGCPQRWAIKEGYGCALLSKQ 123 (540)
Q Consensus 97 ~~id~~~gc~~~~~~~~g~g~~l~~~~ 123 (540)
|+||+|+|||+.|+.++|+|++||.++
T Consensus 100 D~idlNcGCPq~~a~~g~yGa~L~~~~ 126 (358)
T KOG2335|consen 100 DGIDLNCGCPQKVAKRGGYGAFLMDNP 126 (358)
T ss_pred CcccccCCCCHHHHhcCCccceeccCH
Confidence 999999999999999999999999985
|
|
| >KOG2096|consensus | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.3e-26 Score=193.38 Aligned_cols=287 Identities=15% Similarity=0.212 Sum_probs=207.2
Q ss_pred eeeeeecCeEEEEeCCCCCEEEEeeCCCcEEEEcCCCCeeE--EEe--ecCCcceeEEEEeeCCCeEE-EeeCCCeEEEE
Q psy18231 159 RELFVLSGLMHTRFPVDGSYCLTCGSDKKIKLWNPYRNLLL--KTY--GGHAHEVNDATAACDSSQIA-SGASDKSVILW 233 (540)
Q Consensus 159 ~~~~h~~~v~~v~~spdg~~lat~~~dg~i~iwd~~~~~~~--~~~--~~h~~~v~~l~~sp~~~~l~-s~s~dg~i~iw 233 (540)
...+|.+.|++++|+.||++|||++.|++|+||++..-... +.+ .-.-+.-+.+.|+||-+-++ +.-...++++|
T Consensus 81 ~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~vy 160 (420)
T KOG2096|consen 81 VLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLCVY 160 (420)
T ss_pred hhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEEEE
Confidence 34579999999999999999999999999999998763211 111 11223557889999877654 44555689999
Q ss_pred EcCCC---cee---------EeccccCCceeEEEECCCCCEEEEecCCCcEEEEEecCCCCCCcchhhhhHhhhhcCCce
Q psy18231 234 EVTTG---QPV---------RRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQVRCLNEALKEARDSI 301 (540)
Q Consensus 234 d~~~~---~~~---------~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (540)
.+... ... ..-+.|.-.|..+-...++.+|++++.|..|.+|+++.....
T Consensus 161 k~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lkGq~L~------------------ 222 (420)
T KOG2096|consen 161 KLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLKGQLLQ------------------ 222 (420)
T ss_pred EeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecCCceee------------------
Confidence 87432 111 112246667777777778899999999999999999832210
Q ss_pred eEEEEeecccccccccCceeeEEEeeeecccccceeeeeeccceeEEEeecccceecccccccccccchhhhhhcccccE
Q psy18231 302 TSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEARDSI 381 (540)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 381 (540)
.+......-
T Consensus 223 -----------------------------------------------------------------------~idtnq~~n 231 (420)
T KOG2096|consen 223 -----------------------------------------------------------------------SIDTNQSSN 231 (420)
T ss_pred -----------------------------------------------------------------------eeccccccc
Confidence 111112222
Q ss_pred EEEEecC--CeeEeeeCCCeEEEEeCCCC--------ceEEeeeC--CceEEEEEecCCcEEEeecCCCeEEEEeccc--
Q psy18231 382 TSVHVSD--HEILTASLDCRIRRYDIRTG--------NLVTDYVG--EPIVDACFTRDCQCILTCSTDECLRLFDKAT-- 447 (540)
Q Consensus 382 ~~l~~~~--~~l~~~~~dg~i~iwd~~~~--------~~~~~~~~--~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~-- 447 (540)
+..+.+| .++++++.--.+++|.+--+ ..+..+.+ ..|..++|||+...+++.+.||+++|||..-
T Consensus 232 ~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY 311 (420)
T KOG2096|consen 232 YDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRY 311 (420)
T ss_pred cceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceE
Confidence 3445666 78888888888999986422 23455555 4699999999999999999999999999742
Q ss_pred --c---chhhhhc--cCcCCcceEEEEecCCCCeEEEeeCCCcEEEEEecCCcceeEEEecccceeeeEEEEcCCCcEEE
Q psy18231 448 --G---ELLEEYK--GHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIM 520 (540)
Q Consensus 448 --~---~~~~~~~--~~~~~v~~~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~ 520 (540)
+ +.+++.. .|...-.-+++..+|.|+.||.... ..+++|..++++....++. .|...|.+++|+++|++++
T Consensus 312 ~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~g-s~l~~~~se~g~~~~~~e~-~h~~~Is~is~~~~g~~~a 389 (420)
T KOG2096|consen 312 EAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSFG-SDLKVFASEDGKDYPELED-IHSTTISSISYSSDGKYIA 389 (420)
T ss_pred ecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeecC-CceEEEEcccCccchhHHH-hhcCceeeEEecCCCcEEe
Confidence 2 2333331 1222223346689999998877653 5799999999988888765 7999999999999999999
Q ss_pred eecCCeeEEEEccccc
Q psy18231 521 SACGNNVKLWTAEEDY 536 (540)
Q Consensus 521 s~~d~~i~iw~~~~~~ 536 (540)
+++|..+++..-..|+
T Consensus 390 tcGdr~vrv~~ntpg~ 405 (420)
T KOG2096|consen 390 TCGDRYVRVIRNTPGW 405 (420)
T ss_pred eecceeeeeecCCCch
Confidence 9999999998754443
|
|
| >KOG0264|consensus | Back alignment and domain information |
|---|
Probab=99.95 E-value=7e-27 Score=207.10 Aligned_cols=248 Identities=19% Similarity=0.304 Sum_probs=197.4
Q ss_pred cCCcceeEEEEeeCC-CeEEEeeCCCeEEEEEcCCCc----------eeEeccccCCceeEEEECCC-CCEEEEecCCCc
Q psy18231 204 GHAHEVNDATAACDS-SQIASGASDKSVILWEVTTGQ----------PVRRWREHASKVTCVKFNED-SSVVISGSQDNT 271 (540)
Q Consensus 204 ~h~~~v~~l~~sp~~-~~l~s~s~dg~i~iwd~~~~~----------~~~~~~~h~~~v~~~~~~~~-~~~l~s~~~dg~ 271 (540)
.|.+.|+.+.+.|.. ..+|+.+..+.|.|||..+-. +-..+.+|...-.+++|++. .-.|++++.|++
T Consensus 122 ~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~ 201 (422)
T KOG0264|consen 122 NHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHT 201 (422)
T ss_pred cCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCCc
Confidence 489999999999955 456677888999999986431 22267789988888999984 458999999999
Q ss_pred EEEEEecCCCCCCcchhhhhHhhhhcCCceeEEEEeecccccccccCceeeEEEeeeecccccceeeeeeccceeEEEee
Q psy18231 272 VMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLD 351 (540)
Q Consensus 272 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (540)
|.+||+.........
T Consensus 202 i~lwdi~~~~~~~~~----------------------------------------------------------------- 216 (422)
T KOG0264|consen 202 ICLWDINAESKEDKV----------------------------------------------------------------- 216 (422)
T ss_pred EEEEeccccccCCcc-----------------------------------------------------------------
Confidence 999999876521000
Q ss_pred cccceecccccccccccchhhhhhcccccEEEEEecC---CeeEeeeCCCeEEEEeCCC--CceEEeee--CCceEEEEE
Q psy18231 352 FLGSTQIGDVTPISIHNSCFQALKEARDSITSVHVSD---HEILTASLDCRIRRYDIRT--GNLVTDYV--GEPIVDACF 424 (540)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~---~~l~~~~~dg~i~iwd~~~--~~~~~~~~--~~~i~~~~~ 424 (540)
-.....+.+|...|..++|++ +++++++.|+.+.|||+++ .++..... ..++.|++|
T Consensus 217 ----------------~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~f 280 (422)
T KOG0264|consen 217 ----------------VDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAF 280 (422)
T ss_pred ----------------ccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEEe
Confidence 001225678999999999998 8899999999999999995 33333333 368999999
Q ss_pred ec-CCcEEEeecCCCeEEEEecccc-chhhhhccCcCCcceEEEEecCCCC-eEEEeeCCCcEEEEEecCCc--------
Q psy18231 425 TR-DCQCILTCSTDECLRLFDKATG-ELLEEYKGHKSGDFRIECCLDSKDS-QIFCGSSDGKIYKWQLVDSS-------- 493 (540)
Q Consensus 425 sp-~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~v~~~~~~~s~~~~-~l~s~s~dg~i~iwd~~~~~-------- 493 (540)
+| ++..||+|+.|++|.+||+++. +++.++.+|...|..+ .|||... .||+++.|+.+.|||+..-.
T Consensus 281 np~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V--~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda 358 (422)
T KOG0264|consen 281 NPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQV--EWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDA 358 (422)
T ss_pred CCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEE--EeCCCCCceeEecccCCcEEEEeccccccccChhhh
Confidence 99 6678899999999999999985 5789999999999888 7888765 58999999999999986422
Q ss_pred ----ceeEEEecccceeeeEEEEcCCCcEEE-eec-CCeeEEEEccc
Q psy18231 494 ----QISTLIHSVGKAVVNSLCSHPTRKHIM-SAC-GNNVKLWTAEE 534 (540)
Q Consensus 494 ----~~~~~~~~~~~~~v~~l~~s~d~~~l~-s~~-d~~i~iw~~~~ 534 (540)
+.--|.+.+|...|..+.|+|...+++ +.+ |+.+.||++..
T Consensus 359 ~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~ 405 (422)
T KOG0264|consen 359 EDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMAE 405 (422)
T ss_pred ccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeeccc
Confidence 122355569999999999999987655 555 99999999873
|
|
| >KOG2055|consensus | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.6e-26 Score=201.34 Aligned_cols=295 Identities=11% Similarity=0.161 Sum_probs=235.0
Q ss_pred eeeeecccccceeeeeecCeEEEEeCCCCCEEEEeeCCCcEEEEcCC--CCeeEEEeecCCcceeEEEEeeCCC-eEEEe
Q psy18231 148 SIRVYRPLTVNRELFVLSGLMHTRFPVDGSYCLTCGSDKKIKLWNPY--RNLLLKTYGGHAHEVNDATAACDSS-QIASG 224 (540)
Q Consensus 148 ~i~~~~~~~~~~~~~h~~~v~~v~~spdg~~lat~~~dg~i~iwd~~--~~~~~~~~~~h~~~v~~l~~sp~~~-~l~s~ 224 (540)
+|.+-+....+....-.++|++|.|+|....|++++.|++++||.+. +...+..+.-...+|.+++|+|+|. .++++
T Consensus 197 tl~~krlkDaNa~~ps~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s 276 (514)
T KOG2055|consen 197 TLNIKRLKDANAAHPSHGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTS 276 (514)
T ss_pred eeeeEeecccccCCcCcCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEec
Confidence 34444444444444456889999999999999999999999999875 3456666666688999999999999 89999
Q ss_pred eCCCeEEEEEcCCCceeEe--ccccC-CceeEEEECCCCCEEEEecCCCcEEEEEecCCCCCCcchhhhhHhhhhcCCce
Q psy18231 225 ASDKSVILWEVTTGQPVRR--WREHA-SKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQVRCLNEALKEARDSI 301 (540)
Q Consensus 225 s~dg~i~iwd~~~~~~~~~--~~~h~-~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (540)
+.......||+.+.+.... ..++. ..+.....++++++|+..|..|.|.+....+++..
T Consensus 277 ~rrky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli------------------ 338 (514)
T KOG2055|consen 277 GRRKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELI------------------ 338 (514)
T ss_pred ccceEEEEeeccccccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhh------------------
Confidence 9999999999998865432 33333 45777888999999999999999999887776520
Q ss_pred eEEEEeecccccccccCceeeEEEeeeecccccceeeeeeccceeEEEeecccceecccccccccccchhhhhhcccccE
Q psy18231 302 TSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEARDSI 381 (540)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 381 (540)
.-..-.+.|
T Consensus 339 -----------------------------------------------------------------------~s~KieG~v 347 (514)
T KOG2055|consen 339 -----------------------------------------------------------------------TSFKIEGVV 347 (514)
T ss_pred -----------------------------------------------------------------------heeeeccEE
Confidence 111235677
Q ss_pred EEEEecC--CeeEeeeCCCeEEEEeCCCCceEEeeeC-C--ceEEEEEecCCcEEEeecCCCeEEEEeccc------cch
Q psy18231 382 TSVHVSD--HEILTASLDCRIRRYDIRTGNLVTDYVG-E--PIVDACFTRDCQCILTCSTDECLRLFDKAT------GEL 450 (540)
Q Consensus 382 ~~l~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~--~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~------~~~ 450 (540)
..+.|+. ..|++++.+|.|.+||++...+++.+.. + .-++++.|+++.+||+|+..|.|.|||..+ .++
T Consensus 348 ~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkP 427 (514)
T KOG2055|consen 348 SDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKP 427 (514)
T ss_pred eeEEEecCCcEEEEEcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCc
Confidence 8888876 7788888999999999999999988875 2 356778889999999999999999999653 467
Q ss_pred hhhhccCcCCcceEEEEecCCCCeEEEee--CCCcEEEEEecCCcceeEEEec-ccceeeeEEEEcCCCcEEEeec-CCe
Q psy18231 451 LEEYKGHKSGDFRIECCLDSKDSQIFCGS--SDGKIYKWQLVDSSQISTLIHS-VGKAVVNSLCSHPTRKHIMSAC-GNN 526 (540)
Q Consensus 451 ~~~~~~~~~~v~~~~~~~s~~~~~l~s~s--~dg~i~iwd~~~~~~~~~~~~~-~~~~~v~~l~~s~d~~~l~s~~-d~~ 526 (540)
+..+..-...|+.+ .|++|.+.||.+| .+..+++-.+.+......+... ..-+.|+|++|||.+.+||.|. +|.
T Consensus 428 ik~~dNLtt~Itsl--~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~gr 505 (514)
T KOG2055|consen 428 IKTVDNLTTAITSL--QFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGR 505 (514)
T ss_pred hhhhhhhheeeeee--eeCcchhhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeecCCCc
Confidence 77777777778888 8999999988776 5678999988877666555421 2335699999999999999999 999
Q ss_pred eEEEEcc
Q psy18231 527 VKLWTAE 533 (540)
Q Consensus 527 i~iw~~~ 533 (540)
|.+|.+.
T Consensus 506 v~l~kL~ 512 (514)
T KOG2055|consen 506 VHLFKLH 512 (514)
T ss_pred eeeEeec
Confidence 9999874
|
|
| >KOG0650|consensus | Back alignment and domain information |
|---|
Probab=99.95 E-value=8.4e-26 Score=206.40 Aligned_cols=294 Identities=14% Similarity=0.205 Sum_probs=230.8
Q ss_pred cccccceeeeecccccceeeeeecCeEEEEeCCCCCEEEEeeCCCcEEEEcCCCCeeEEEeecCCcceeEEEEeeCCCe-
Q psy18231 142 ELPKEWSIRVYRPLTVNRELFVLSGLMHTRFPVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQ- 220 (540)
Q Consensus 142 ~~~~~~~i~~~~~~~~~~~~~h~~~v~~v~~spdg~~lat~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~- 220 (540)
.+.....+|-+-........+|++.|.+++..|.|.+||+|+.||+|+||.+.+|.+++++. ..+.|.|++|+|.+..
T Consensus 378 kLPsp~dLrPFPt~~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~-~d~~I~~vaw~P~~~~~ 456 (733)
T KOG0650|consen 378 KLPSPKDLRPFPTRCALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQ-FDSEIRSVAWNPLSDLC 456 (733)
T ss_pred cCCChhhcCCCcceeeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEe-ecceeEEEEecCCCCce
Confidence 34555666666655556678899999999999999999999999999999999999999987 5779999999996553
Q ss_pred -EEEeeCCCeEEEEEcCCC---------------------------------c----eeEeccccCCceeEEEECCCCCE
Q psy18231 221 -IASGASDKSVILWEVTTG---------------------------------Q----PVRRWREHASKVTCVKFNEDSSV 262 (540)
Q Consensus 221 -l~s~s~dg~i~iwd~~~~---------------------------------~----~~~~~~~h~~~v~~~~~~~~~~~ 262 (540)
||++-.+. +.|-+..-| + -+...-.|...|..+.|+..|.|
T Consensus 457 vLAvA~~~~-~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDY 535 (733)
T KOG0650|consen 457 VLAVAVGEC-VLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDY 535 (733)
T ss_pred eEEEEecCc-eEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCce
Confidence 44433322 444433211 0 01122357889999999999999
Q ss_pred EEEecCC---CcEEEEEecCCCCCCcchhhhhHhhhhcCCceeEEEEeecccccccccCceeeEEEeeeecccccceeee
Q psy18231 263 VISGSQD---NTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGV 339 (540)
Q Consensus 263 l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (540)
|++...+ ..|.|.++.....
T Consensus 536 latV~~~~~~~~VliHQLSK~~s--------------------------------------------------------- 558 (733)
T KOG0650|consen 536 LATVMPDSGNKSVLIHQLSKRKS--------------------------------------------------------- 558 (733)
T ss_pred EEEeccCCCcceEEEEecccccc---------------------------------------------------------
Confidence 9987654 4688888876542
Q ss_pred eeccceeEEEeecccceecccccccccccchhhhhhcccccEEEEEecC--CeeEeeeCCCeEEEEeCCCCceEEeeeC-
Q psy18231 340 LMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEARDSITSVHVSD--HEILTASLDCRIRRYDIRTGNLVTDYVG- 416 (540)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~- 416 (540)
...+....+.|.++.|+| .+|++++. ..|+|||+..+.++.++..
T Consensus 559 -------------------------------Q~PF~kskG~vq~v~FHPs~p~lfVaTq-~~vRiYdL~kqelvKkL~tg 606 (733)
T KOG0650|consen 559 -------------------------------QSPFRKSKGLVQRVKFHPSKPYLFVATQ-RSVRIYDLSKQELVKKLLTG 606 (733)
T ss_pred -------------------------------cCchhhcCCceeEEEecCCCceEEEEec-cceEEEehhHHHHHHHHhcC
Confidence 013445567889999999 66666654 6799999999888777764
Q ss_pred -CceEEEEEecCCcEEEeecCCCeEEEEecccc-chhhhhccCcCCcceEEEEecCCCCeEEEeeCCCcEEEEEec----
Q psy18231 417 -EPIVDACFTRDCQCILTCSTDECLRLFDKATG-ELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLV---- 490 (540)
Q Consensus 417 -~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~v~~~~~~~s~~~~~l~s~s~dg~i~iwd~~---- 490 (540)
..|..++.+|.|..|+.|+.|+.+..||+.-. ++.++++.|...+..+ +|++.-.++++|+.||++.|+.-.
T Consensus 607 ~kwiS~msihp~GDnli~gs~d~k~~WfDldlsskPyk~lr~H~~avr~V--a~H~ryPLfas~sdDgtv~Vfhg~VY~D 684 (733)
T KOG0650|consen 607 SKWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSV--AFHKRYPLFASGSDDGTVIVFHGMVYND 684 (733)
T ss_pred CeeeeeeeecCCCCeEEEecCCCeeEEEEcccCcchhHHhhhhhhhhhhh--hhccccceeeeecCCCcEEEEeeeeehh
Confidence 57999999999999999999999999999754 6888999999999988 899998899999999999998532
Q ss_pred ---CC--cceeEEEeccccee----eeEEEEcCCCcEEEeec-CCeeEEE
Q psy18231 491 ---DS--SQISTLIHSVGKAV----VNSLCSHPTRKHIMSAC-GNNVKLW 530 (540)
Q Consensus 491 ---~~--~~~~~~~~~~~~~~----v~~l~~s~d~~~l~s~~-d~~i~iw 530 (540)
+. -++..+. +|... |..+.|+|...+|++++ ||+|++|
T Consensus 685 l~qnpliVPlK~L~--gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 685 LLQNPLIVPLKRLR--GHEKTNDLGVLDTIWHPRQPWLFSAGADGTIRLF 732 (733)
T ss_pred hhcCCceEeeeecc--CceeecccceEeecccCCCceEEecCCCceEEee
Confidence 11 1244555 77766 89999999999999999 9999998
|
|
| >KOG1408|consensus | Back alignment and domain information |
|---|
Probab=99.95 E-value=8.5e-27 Score=216.96 Aligned_cols=242 Identities=19% Similarity=0.293 Sum_probs=205.6
Q ss_pred cCeEEEEeCCCCCEEEEeeCCCcEEEEcCCCCeeEEEeecCCcceeEEEEee---CCCeEEEeeCCCeEEEEEcCCC-ce
Q psy18231 165 SGLMHTRFPVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAAC---DSSQIASGASDKSVILWEVTTG-QP 240 (540)
Q Consensus 165 ~~v~~v~~spdg~~lat~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp---~~~~l~s~s~dg~i~iwd~~~~-~~ 240 (540)
-.+.+++.||+|++||+|..-|+++||++.+.+....+..|...|.|+.|+- ..++||+++.|..|.|+|+... .+
T Consensus 460 ~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l 539 (1080)
T KOG1408|consen 460 FGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDL 539 (1080)
T ss_pred cceEEEEECCCcceecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccch
Confidence 3589999999999999999999999999999999999999999999999985 4578999999999999999654 66
Q ss_pred eEeccccCCceeEEEECCCC--CEEEEecCCCcEEEEEecCCCCCCcchhhhhHhhhhcCCceeEEEEeecccccccccC
Q psy18231 241 VRRWREHASKVTCVKFNEDS--SVVISGSQDNTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHLSNG 318 (540)
Q Consensus 241 ~~~~~~h~~~v~~~~~~~~~--~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (540)
++++.+|.+.|+++.|...| ..+++++.|+.|.+ +.......-.+
T Consensus 540 ~qtld~HSssITsvKFa~~gln~~MiscGADksimF-r~~qk~~~g~~-------------------------------- 586 (1080)
T KOG1408|consen 540 VQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMF-RVNQKASSGRL-------------------------------- 586 (1080)
T ss_pred hhhhcccccceeEEEEeecCCceEEEeccCchhhhe-ehhccccCcee--------------------------------
Confidence 78899999999999998876 68899999987654 33221100000
Q ss_pred ceeeEEEeeeecccccceeeeeeccceeEEEeecccceecccccccccccchhhhhhcccccEEEEEecC--CeeEeeeC
Q psy18231 319 LLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEARDSITSVHVSD--HEILTASL 396 (540)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~--~~l~~~~~ 396 (540)
+ ...+..-....++.++..| +++++++.
T Consensus 587 ------f--------------------------------------------~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQ 616 (1080)
T KOG1408|consen 587 ------F--------------------------------------------PRHTQTLSKTTLYDMAVDPTSKLVVTVCQ 616 (1080)
T ss_pred ------c--------------------------------------------cccccccccceEEEeeeCCCcceEEEEec
Confidence 0 0001111245678888888 89999999
Q ss_pred CCeEEEEeCCCCceEEeeeC-----CceEEEEEecCCcEEEeecCCCeEEEEeccccchhhhhccCcCCcceEEEEecCC
Q psy18231 397 DCRIRRYDIRTGNLVTDYVG-----EPIVDACFTRDCQCILTCSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSK 471 (540)
Q Consensus 397 dg~i~iwd~~~~~~~~~~~~-----~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~s~~ 471 (540)
|..|+|||+++++..+.+++ +....+...|.|.|+++.+.|.++.++|..+++++.++.+|...|+.+ .|.+|
T Consensus 617 Drnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~GHsE~VTG~--kF~nD 694 (1080)
T KOG1408|consen 617 DRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMTGHSEAVTGV--KFLND 694 (1080)
T ss_pred ccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhhcCcchheeee--eeccc
Confidence 99999999999999999986 457788999999999999999999999999999999999999999998 89999
Q ss_pred CCeEEEeeCCCcEEEEEecC
Q psy18231 472 DSQIFCGSSDGKIYKWQLVD 491 (540)
Q Consensus 472 ~~~l~s~s~dg~i~iwd~~~ 491 (540)
-+.|++.+.||.|.||.+..
T Consensus 695 CkHlISvsgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 695 CKHLISVSGDGCIFVWKLPL 714 (1080)
T ss_pred chhheeecCCceEEEEECch
Confidence 99999999999999999853
|
|
| >KOG2048|consensus | Back alignment and domain information |
|---|
Probab=99.95 E-value=8e-25 Score=203.10 Aligned_cols=279 Identities=15% Similarity=0.275 Sum_probs=228.9
Q ss_pred ecCeEEEEeCCCCCEEEEeeCCCcEEEEcCCCC-eeEEEeecC-CcceeEEEEeeCCCeEEEeeCCCeEEEEEcCCCcee
Q psy18231 164 LSGLMHTRFPVDGSYCLTCGSDKKIKLWNPYRN-LLLKTYGGH-AHEVNDATAACDSSQIASGASDKSVILWEVTTGQPV 241 (540)
Q Consensus 164 ~~~v~~v~~spdg~~lat~~~dg~i~iwd~~~~-~~~~~~~~h-~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~ 241 (540)
..+|.++||+.+.+.||.+-.+|.|.||++..+ -+...+.++ ...|.+++|+ ++..|++.+.+|.|.-||+.+++.+
T Consensus 25 Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~-e~~RLFS~g~sg~i~EwDl~~lk~~ 103 (691)
T KOG2048|consen 25 PSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWA-EGGRLFSSGLSGSITEWDLHTLKQK 103 (691)
T ss_pred ccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEc-cCCeEEeecCCceEEEEecccCcee
Confidence 378999999999999999999999999999876 333445554 5689999999 5667999999999999999999999
Q ss_pred EeccccCCceeEEEECCCCCEEEEecCCCcEEEEEecCCCCCCcchhhhhHhhhhcCCceeEEEEeecccccccccCcee
Q psy18231 242 RRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHLSNGLLT 321 (540)
Q Consensus 242 ~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (540)
..+....+.|++++.+|.+..++.|+.||.+..++...++..-
T Consensus 104 ~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~------------------------------------- 146 (691)
T KOG2048|consen 104 YNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITY------------------------------------- 146 (691)
T ss_pred EEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEE-------------------------------------
Confidence 9999999999999999999999999999977777766554100
Q ss_pred eEEEeeeecccccceeeeeeccceeEEEeecccceecccccccccccchhhhhhcccccEEEEEecC--CeeEeeeCCCe
Q psy18231 322 KLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEARDSITSVHVSD--HEILTASLDCR 399 (540)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~--~~l~~~~~dg~ 399 (540)
...+....+.|.+++|++ ..++.|+.||.
T Consensus 147 -------------------------------------------------~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~ 177 (691)
T KOG2048|consen 147 -------------------------------------------------KRSLMRQKSRVLSLSWNPTGTKIAGGSIDGV 177 (691)
T ss_pred -------------------------------------------------EeecccccceEEEEEecCCccEEEecccCce
Confidence 013334468899999999 55899999999
Q ss_pred EEEEeCCCCceEEeeeC--------C--ceEEEEEecCCcEEEeecCCCeEEEEeccccchhhhhccCcCCcceEEEEec
Q psy18231 400 IRRYDIRTGNLVTDYVG--------E--PIVDACFTRDCQCILTCSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLD 469 (540)
Q Consensus 400 i~iwd~~~~~~~~~~~~--------~--~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~s 469 (540)
|++||..++..+..... . -|+++.|-.+ ..+++|..-|+|.+||...+..+..+..|...|.++ +..
T Consensus 178 Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd-~tI~sgDS~G~V~FWd~~~gTLiqS~~~h~adVl~L--av~ 254 (691)
T KOG2048|consen 178 IRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRD-STIASGDSAGTVTFWDSIFGTLIQSHSCHDADVLAL--AVA 254 (691)
T ss_pred EEEEEcCCCceEEEeeecccccccCCceEEEEEEEeec-CcEEEecCCceEEEEcccCcchhhhhhhhhcceeEE--EEc
Confidence 99999999987662221 1 2677777755 568999999999999999999999999999999888 778
Q ss_pred CCCCeEEEeeCCCcEEEEEecCCcc--eeEEEecccceeeeEEEEcCCCcEEEeec-CCeeEEEEccc
Q psy18231 470 SKDSQIFCGSSDGKIYKWQLVDSSQ--ISTLIHSVGKAVVNSLCSHPTRKHIMSAC-GNNVKLWTAEE 534 (540)
Q Consensus 470 ~~~~~l~s~s~dg~i~iwd~~~~~~--~~~~~~~~~~~~v~~l~~s~d~~~l~s~~-d~~i~iw~~~~ 534 (540)
+++.++++++.|+.|.-|...+.+. +.......|...|.+++..++ .|++|+ |.++.+=....
T Consensus 255 ~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~--~l~sgG~d~~l~i~~s~~ 320 (691)
T KOG2048|consen 255 DNEDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIEN--ALISGGRDFTLAICSSRE 320 (691)
T ss_pred CCCCeEEEccCCCceEEEEecCCccceeeeccccCCcccceeeeeecc--eEEecceeeEEEEccccc
Confidence 8889999999999999999776643 233333478888999999876 888999 99888765543
|
|
| >KOG0647|consensus | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.4e-25 Score=188.34 Aligned_cols=259 Identities=14% Similarity=0.198 Sum_probs=205.8
Q ss_pred Ccceeccccchhhhhhcccccceeeeeccccc-----ceeeeeecCeEEEEeCCCCCEEEEeeCCCcEEEEcCCCCeeEE
Q psy18231 126 HPLLFSLPRTITRILYELPKEWSIRVYRPLTV-----NRELFVLSGLMHTRFPVDGSYCLTCGSDKKIKLWNPYRNLLLK 200 (540)
Q Consensus 126 ~~~~~s~~~~~~~~~~~~~~~~~i~~~~~~~~-----~~~~~h~~~v~~v~~spdg~~lat~~~dg~i~iwd~~~~~~~~ 200 (540)
..+.||| ....++...+-|+++|+|+.... .....|.++|.+++|+.||..+++|+.|+.+++||+.+++ ..
T Consensus 31 S~l~FSP--~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q-~~ 107 (347)
T KOG0647|consen 31 SALAFSP--QADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQ-VS 107 (347)
T ss_pred heeEecc--ccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCCC-ee
Confidence 3556666 34556667899999999998773 2345699999999999999999999999999999999995 55
Q ss_pred EeecCCcceeEEEEeeCCC--eEEEeeCCCeEEEEEcCCCceeEeccccCCceeEEEECCCCCEEEEecCCCcEEEEEec
Q psy18231 201 TYGGHAHEVNDATAACDSS--QIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVK 278 (540)
Q Consensus 201 ~~~~h~~~v~~l~~sp~~~--~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~ 278 (540)
.+..|.++|.++.|-+... .|+|||.|.+|+.||.+...++.+++ -.+.++++..- ...++.+..++.|.+|+++
T Consensus 108 ~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~-LPeRvYa~Dv~--~pm~vVata~r~i~vynL~ 184 (347)
T KOG0647|consen 108 QVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQ-LPERVYAADVL--YPMAVVATAERHIAVYNLE 184 (347)
T ss_pred eeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeee-ccceeeehhcc--CceeEEEecCCcEEEEEcC
Confidence 6777999999999988655 79999999999999999999888875 35667777664 3477888889999999998
Q ss_pred CCCCCCcchhhhhHhhhhcCCceeEEEEeecccccccccCceeeEEEeeeecccccceeeeeeccceeEEEeecccceec
Q psy18231 279 SRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQI 358 (540)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (540)
.+......
T Consensus 185 n~~te~k~------------------------------------------------------------------------ 192 (347)
T KOG0647|consen 185 NPPTEFKR------------------------------------------------------------------------ 192 (347)
T ss_pred CCcchhhh------------------------------------------------------------------------
Confidence 76420000
Q ss_pred ccccccccccchhhhhhcccccEEEEEecC--CeeEeeeCCCeEEEEeCCCCceE--Eeee--C---------CceEEEE
Q psy18231 359 GDVTPISIHNSCFQALKEARDSITSVHVSD--HEILTASLDCRIRRYDIRTGNLV--TDYV--G---------EPIVDAC 423 (540)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~--~~l~~~~~dg~i~iwd~~~~~~~--~~~~--~---------~~i~~~~ 423 (540)
.....+-.+.|++..+ +..+.|+-.|.+.+..++.+... ..+. . ..|++++
T Consensus 193 --------------~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~ 258 (347)
T KOG0647|consen 193 --------------IESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIA 258 (347)
T ss_pred --------------hcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceE
Confidence 1112234567777655 66799999999999988876322 2221 1 2578899
Q ss_pred EecCCcEEEeecCCCeEEEEeccccchhhhhccCcCCcceEEEEecCCCCeEEEe
Q psy18231 424 FTRDCQCILTCSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCG 478 (540)
Q Consensus 424 ~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~s~~~~~l~s~ 478 (540)
|+|....|++++.||++.+||-.....+.+.+.|..+|++- +|+.+|.++|-+
T Consensus 259 FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~~qpItcc--~fn~~G~ifaYA 311 (347)
T KOG0647|consen 259 FHPVHGTLVTAGSDGTFSFWDKDARTKLKTSETHPQPITCC--SFNRNGSIFAYA 311 (347)
T ss_pred eecccceEEEecCCceEEEecchhhhhhhccCcCCCcccee--EecCCCCEEEEE
Confidence 99999999999999999999999999999999999999877 899999987654
|
|
| >KOG0267|consensus | Back alignment and domain information |
|---|
Probab=99.95 E-value=7.5e-28 Score=224.42 Aligned_cols=250 Identities=20% Similarity=0.344 Sum_probs=222.8
Q ss_pred CCEEEEeeCCCcEEEEcCCCCeeEEEeecCCcceeEEEEeeCCCeEEEeeCCCeEEEEEcCCCceeEeccccCCceeEEE
Q psy18231 176 GSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVK 255 (540)
Q Consensus 176 g~~lat~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~ 255 (540)
+.+++....+-.+++||... +..|...|.++..-..++.+++|+.|..+-+|.+.....+..+.+|.++|.++.
T Consensus 4 ~~~~m~~~~~t~Lr~~~~~~------~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~ 77 (825)
T KOG0267|consen 4 MEFLMKTKRATKLRVWDTRE------FVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLT 77 (825)
T ss_pred ccccceeeeeeccccccchh------hhhhhhhhceeeeeccceeeccCCCceeeccccccCCchhheeeccCCcceeee
Confidence 34455666677788888543 445888888888866788999999999999999988888888999999999999
Q ss_pred ECCCCCEEEEecCCCcEEEEEecCCCCCCcchhhhhHhhhhcCCceeEEEEeecccccccccCceeeEEEeeeecccccc
Q psy18231 256 FNEDSSVVISGSQDNTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGL 335 (540)
Q Consensus 256 ~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (540)
|+++..+|+.|+.+|+|++||++..+
T Consensus 78 f~~~E~LlaagsasgtiK~wDleeAk------------------------------------------------------ 103 (825)
T KOG0267|consen 78 FDTSERLLAAGSASGTIKVWDLEEAK------------------------------------------------------ 103 (825)
T ss_pred cCcchhhhcccccCCceeeeehhhhh------------------------------------------------------
Confidence 99999999999999999999998766
Q ss_pred eeeeeeccceeEEEeecccceecccccccccccchhhhhhcccccEEEEEecC--CeeEeeeCCCeEEEEeCCCCceEEe
Q psy18231 336 LSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEARDSITSVHVSD--HEILTASLDCRIRRYDIRTGNLVTD 413 (540)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~ 413 (540)
.++++.+|...+.++.|+| .+++.|+.|+.+.+||.+...+.+.
T Consensus 104 ----------------------------------~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~ 149 (825)
T KOG0267|consen 104 ----------------------------------IVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHT 149 (825)
T ss_pred ----------------------------------hhhhhhccccCcceeeeccceEEeccccccccceehhhhccCceee
Confidence 3458889999999999999 7778899999999999998889888
Q ss_pred eeCC--ceEEEEEecCCcEEEeecCCCeEEEEeccccchhhhhccCcCCcceEEEEecCCCCeEEEeeCCCcEEEEEecC
Q psy18231 414 YVGE--PIVDACFTRDCQCILTCSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVD 491 (540)
Q Consensus 414 ~~~~--~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~s~~~~~l~s~s~dg~i~iwd~~~ 491 (540)
+.++ .+..+.|+|+|++++.+++|.+++|||...|+.+..|+.|.+.+..+ .|+|..-++++|+.|++|++||+++
T Consensus 150 ~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sl--e~hp~e~Lla~Gs~d~tv~f~dlet 227 (825)
T KOG0267|consen 150 YKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSL--EFHPLEVLLAPGSSDRTVRFWDLET 227 (825)
T ss_pred ecCCcceeEEEeecCCCceeeccCCcceeeeeccccccccccccccccccccc--ccCchhhhhccCCCCceeeeeccce
Confidence 8874 58889999999999999999999999999999999999999999888 6999998999999999999999999
Q ss_pred CcceeEEEecccceeeeEEEEcCCCcEEEeec
Q psy18231 492 SSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC 523 (540)
Q Consensus 492 ~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~ 523 (540)
-+.+.... .....|.+++|+|+++.+.+|.
T Consensus 228 fe~I~s~~--~~~~~v~~~~fn~~~~~~~~G~ 257 (825)
T KOG0267|consen 228 FEVISSGK--PETDGVRSLAFNPDGKIVLSGE 257 (825)
T ss_pred eEEeeccC--CccCCceeeeecCCceeeecCc
Confidence 88888887 5678899999999999999887
|
|
| >KOG0639|consensus | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.2e-27 Score=212.23 Aligned_cols=260 Identities=16% Similarity=0.239 Sum_probs=209.1
Q ss_pred hhhhhcccccceeeeecccccce--------eeeeecCeEEEEeCCCCCEEEEeeCCCcEEEEcCCCCee--EEEeecCC
Q psy18231 137 TRILYELPKEWSIRVYRPLTVNR--------ELFVLSGLMHTRFPVDGSYCLTCGSDKKIKLWNPYRNLL--LKTYGGHA 206 (540)
Q Consensus 137 ~~~~~~~~~~~~i~~~~~~~~~~--------~~~h~~~v~~v~~spdg~~lat~~~dg~i~iwd~~~~~~--~~~~~~h~ 206 (540)
.+.+|++++ +.|++|+...... .+....-|.++.++|||+.|++|+.-.++.|||+....+ ...+....
T Consensus 431 trhVyTgGk-gcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWDLAapTprikaeltssa 509 (705)
T KOG0639|consen 431 TRHVYTGGK-GCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDLAAPTPRIKAELTSSA 509 (705)
T ss_pred cceeEecCC-CeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceeeeeeccCCCcchhhhcCCcc
Confidence 344455433 4577777654321 122446688999999999999999999999999876543 34444445
Q ss_pred cceeEEEEeeCCCeEEEeeCCCeEEEEEcCCCceeEeccccCCceeEEEECCCCCEEEEecCCCcEEEEEecCCCCCCcc
Q psy18231 207 HEVNDATAACDSSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQ 286 (540)
Q Consensus 207 ~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 286 (540)
-..++++.+||.+..+++..||.|.|||+.+...++.+++|.+.+.||..++||..|.||+-|.+|+.||++++....
T Consensus 510 paCyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~dGtklWTGGlDntvRcWDlregrqlq-- 587 (705)
T KOG0639|consen 510 PACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQ-- 587 (705)
T ss_pred hhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecCCCceeecCCCccceeehhhhhhhhhh--
Confidence 667889999999999999999999999999999999999999999999999999999999999999999999886211
Q ss_pred hhhhhHhhhhcCCceeEEEEeecccccccccCceeeEEEeeeecccccceeeeeeccceeEEEeecccceeccccccccc
Q psy18231 287 VRCLNEALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISI 366 (540)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (540)
T Consensus 588 -------------------------------------------------------------------------------- 587 (705)
T KOG0639|consen 588 -------------------------------------------------------------------------------- 587 (705)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccchhhhhhcccccEEEEEecC--CeeEeeeCCCeEEEEeCCCCceE-EeeeCCceEEEEEecCCcEEEeecCCCeEEEE
Q psy18231 367 HNSCFQALKEARDSITSVHVSD--HEILTASLDCRIRRYDIRTGNLV-TDYVGEPIVDACFTRDCQCILTCSTDECLRLF 443 (540)
Q Consensus 367 ~~~~~~~~~~~~~~v~~l~~~~--~~l~~~~~dg~i~iwd~~~~~~~-~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~i~ 443 (540)
.......|.++...| .++++|-.++.+.+......+.. ..++..-|.++.|++.|+++++.+.|+-+..|
T Consensus 588 -------qhdF~SQIfSLg~cP~~dWlavGMens~vevlh~skp~kyqlhlheScVLSlKFa~cGkwfvStGkDnlLnaw 660 (705)
T KOG0639|consen 588 -------QHDFSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPEKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAW 660 (705)
T ss_pred -------hhhhhhhheecccCCCccceeeecccCcEEEEecCCccceeecccccEEEEEEecccCceeeecCchhhhhhc
Confidence 112356788888888 99999999999998887644332 23344679999999999999999999999999
Q ss_pred eccccchhhhhccCcCCcceEEEEecCCCCeEEEeeCCCcEEEEEe
Q psy18231 444 DKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQL 489 (540)
Q Consensus 444 d~~~~~~~~~~~~~~~~v~~~~~~~s~~~~~l~s~s~dg~i~iwd~ 489 (540)
...-|..+...+... .| +.|..|.|+++|++|+.|....||.+
T Consensus 661 rtPyGasiFqskE~S-sV--lsCDIS~ddkyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 661 RTPYGASIFQSKESS-SV--LSCDISFDDKYIVTGSGDKKATVYEV 703 (705)
T ss_pred cCccccceeeccccC-cc--eeeeeccCceEEEecCCCcceEEEEE
Confidence 999888776665433 34 45578999999999999999888875
|
|
| >KOG0772|consensus | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.2e-26 Score=208.24 Aligned_cols=265 Identities=20% Similarity=0.327 Sum_probs=208.0
Q ss_pred hhhhhcccccceeeeecccccceeee--------eecCeEEEEeCCCCCEEEEeeCCCcEEEEcCCCCeeEE--------
Q psy18231 137 TRILYELPKEWSIRVYRPLTVNRELF--------VLSGLMHTRFPVDGSYCLTCGSDKKIKLWNPYRNLLLK-------- 200 (540)
Q Consensus 137 ~~~~~~~~~~~~i~~~~~~~~~~~~~--------h~~~v~~v~~spdg~~lat~~~dg~i~iwd~~~~~~~~-------- 200 (540)
..-+++++.|.+|+.|+......... -...|++++||+.|..|++.+.....+|+|-...+...
T Consensus 179 GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI 258 (641)
T KOG0772|consen 179 GARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQAKLLDRDGFEIVEFSKGDQYI 258 (641)
T ss_pred CceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcceeEEccCCceeeeeeccchhh
Confidence 34456889999999999877543222 34579999999999999988888999999964333222
Q ss_pred ----EeecCCcceeEEEEeeC-CCeEEEeeCCCeEEEEEcCCCc-eeEecc-----ccCCceeEEEECCCCCEEEEecCC
Q psy18231 201 ----TYGGHAHEVNDATAACD-SSQIASGASDKSVILWEVTTGQ-PVRRWR-----EHASKVTCVKFNEDSSVVISGSQD 269 (540)
Q Consensus 201 ----~~~~h~~~v~~l~~sp~-~~~l~s~s~dg~i~iwd~~~~~-~~~~~~-----~h~~~v~~~~~~~~~~~l~s~~~d 269 (540)
.-+||...++|.+|+|+ ...++|++.||+++|||++.-+ .++.++ +..-+++.++|++|++.||+|+.|
T Consensus 259 ~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~D 338 (641)
T KOG0772|consen 259 RDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLD 338 (641)
T ss_pred hhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCceeeecCCCcchhhhcccC
Confidence 22689999999999995 4568999999999999997653 333332 334578999999999999999999
Q ss_pred CcEEEEEecCCCCCCcchhhhhHhhhhcCCceeEEEEeecccccccccCceeeEEEeeeecccccceeeeeeccceeEEE
Q psy18231 270 NTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVL 349 (540)
Q Consensus 270 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (540)
|+|.+|+.......+..
T Consensus 339 GSIQ~W~~~~~~v~p~~--------------------------------------------------------------- 355 (641)
T KOG0772|consen 339 GSIQIWDKGSRTVRPVM--------------------------------------------------------------- 355 (641)
T ss_pred CceeeeecCCcccccce---------------------------------------------------------------
Confidence 99999998654321111
Q ss_pred eecccceecccccccccccchhhhhhcccc--cEEEEEecC--CeeEeeeCCCeEEEEeCCCCc-eEEeeeC----CceE
Q psy18231 350 LDFLGSTQIGDVTPISIHNSCFQALKEARD--SITSVHVSD--HEILTASLDCRIRRYDIRTGN-LVTDYVG----EPIV 420 (540)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~v~~l~~~~--~~l~~~~~dg~i~iwd~~~~~-~~~~~~~----~~i~ 420 (540)
..-..|.. .|+||+|++ ++|++-+.|+++++||++..+ ++....+ .+-+
T Consensus 356 ----------------------~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~t 413 (641)
T KOG0772|consen 356 ----------------------KVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGT 413 (641)
T ss_pred ----------------------EeeeccCCCCceeEEEeccccchhhhccCCCceeeeeccccccchhhhcCCCccCCCC
Confidence 12345655 899999998 999999999999999999764 4444443 4678
Q ss_pred EEEEecCCcEEEeecC------CCeEEEEeccccchhhhhccCcCCcceEEEEecCCCCeEEEeeCCCcEEEEE
Q psy18231 421 DACFTRDCQCILTCST------DECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQ 488 (540)
Q Consensus 421 ~~~~sp~~~~l~~~~~------dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~s~~~~~l~s~s~dg~i~iwd 488 (540)
.++|||+.+++++|+. .|.+.+||..+.+.+..+.-... ..+.+.|+|.=+.|..|+.||++++|=
T Consensus 414 dc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~a--Svv~~~WhpkLNQi~~gsgdG~~~vyY 485 (641)
T KOG0772|consen 414 DCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDISTA--SVVRCLWHPKLNQIFAGSGDGTAHVYY 485 (641)
T ss_pred ccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCCCc--eEEEEeecchhhheeeecCCCceEEEE
Confidence 8999999999999864 57899999999888877765544 445669999999999999999999874
|
|
| >KOG1332|consensus | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.2e-26 Score=186.40 Aligned_cols=243 Identities=17% Similarity=0.241 Sum_probs=192.7
Q ss_pred eeeecCeEEEEeCCCCCEEEEeeCCCcEEEEcCCCC---eeEEEeecCCcceeEEEEee--CCCeEEEeeCCCeEEEEEc
Q psy18231 161 LFVLSGLMHTRFPVDGSYCLTCGSDKKIKLWNPYRN---LLLKTYGGHAHEVNDATAAC--DSSQIASGASDKSVILWEV 235 (540)
Q Consensus 161 ~~h~~~v~~v~~spdg~~lat~~~dg~i~iwd~~~~---~~~~~~~~h~~~v~~l~~sp--~~~~l~s~s~dg~i~iwd~ 235 (540)
..|.+.|..+...-.|++|||++.|++|+|+...++ +++.+|.||.++|+.++|.. .|.+||+++.||.|.||.-
T Consensus 8 t~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke 87 (299)
T KOG1332|consen 8 TQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKE 87 (299)
T ss_pred hhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEec
Confidence 468888999988889999999999999999998754 57889999999999999976 8999999999999999998
Q ss_pred CCCce--eEeccccCCceeEEEECCC--CCEEEEecCCCcEEEEEecCCCCCCcchhhhhHhhhhcCCceeEEEEeeccc
Q psy18231 236 TTGQP--VRRWREHASKVTCVKFNED--SSVVISGSQDNTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKST 311 (540)
Q Consensus 236 ~~~~~--~~~~~~h~~~v~~~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (540)
++++- ......|...|++++|.|. |-.|++++.||.|.|.+.+....-.
T Consensus 88 ~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~--------------------------- 140 (299)
T KOG1332|consen 88 ENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWT--------------------------- 140 (299)
T ss_pred CCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCcc---------------------------
Confidence 88743 3446689999999999984 5689999999999999987752100
Q ss_pred ccccccCceeeEEEeeeecccccceeeeeeccceeEEEeecccceecccccccccccchhhhhhcccccEEEEEecC---
Q psy18231 312 KNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEARDSITSVHVSD--- 388 (540)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~--- 388 (540)
..+....|.-.|++++|.|
T Consensus 141 ----------------------------------------------------------t~ki~~aH~~GvnsVswapa~~ 162 (299)
T KOG1332|consen 141 ----------------------------------------------------------TSKIVFAHEIGVNSVSWAPASA 162 (299)
T ss_pred ----------------------------------------------------------chhhhhccccccceeeecCcCC
Confidence 0113445666677776655
Q ss_pred -------------CeeEeeeCCCeEEEEeCCCCce--EEeeeC--CceEEEEEecCC----cEEEeecCCCeEEEEeccc
Q psy18231 389 -------------HEILTASLDCRIRRYDIRTGNL--VTDYVG--EPIVDACFTRDC----QCILTCSTDECLRLFDKAT 447 (540)
Q Consensus 389 -------------~~l~~~~~dg~i~iwd~~~~~~--~~~~~~--~~i~~~~~sp~~----~~l~~~~~dg~i~i~d~~~ 447 (540)
..|++|+.|..|+||+..+++- -..+.+ ..|+.++|.|.- ..+++++.||++.||-...
T Consensus 163 ~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~ 242 (299)
T KOG1332|consen 163 PGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDE 242 (299)
T ss_pred CccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecC
Confidence 3599999999999999987632 233444 579999999954 5799999999999997652
Q ss_pred c-c--hhhhhccCcCCcceEEEEecCCCCeEEEeeCCCcEEEEEec
Q psy18231 448 G-E--LLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLV 490 (540)
Q Consensus 448 ~-~--~~~~~~~~~~~v~~~~~~~s~~~~~l~s~s~dg~i~iwd~~ 490 (540)
. + ....++.....++.+ .||..|+.|+.++.|+.|.+|.-.
T Consensus 243 e~e~wk~tll~~f~~~~w~v--SWS~sGn~LaVs~GdNkvtlwke~ 286 (299)
T KOG1332|consen 243 EYEPWKKTLLEEFPDVVWRV--SWSLSGNILAVSGGDNKVTLWKEN 286 (299)
T ss_pred ccCcccccccccCCcceEEE--EEeccccEEEEecCCcEEEEEEeC
Confidence 2 1 122233344556666 899999999999999999999843
|
|
| >KOG2106|consensus | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.8e-24 Score=193.81 Aligned_cols=340 Identities=11% Similarity=0.122 Sum_probs=247.7
Q ss_pred cccceeeeecccccceeeeeecCeEEEEeCCCCCEEEEeeCCC--------cEEEEcCCCCeeEEEeecCCcceeEEEEe
Q psy18231 144 PKEWSIRVYRPLTVNRELFVLSGLMHTRFPVDGSYCLTCGSDK--------KIKLWNPYRNLLLKTYGGHAHEVNDATAA 215 (540)
Q Consensus 144 ~~~~~i~~~~~~~~~~~~~h~~~v~~v~~spdg~~lat~~~dg--------~i~iwd~~~~~~~~~~~~h~~~v~~l~~s 215 (540)
..-..+.-|+...+....+|...|.|++.+||.-.+++|-..| .+++||..+...+..+......|.+++|+
T Consensus 84 A~V~Vl~n~ee~~Qr~y~GH~ddikc~~vHPdri~vatGQ~ag~~g~~~~phvriWdsv~L~TL~V~g~f~~GV~~vaFs 163 (626)
T KOG2106|consen 84 AAVGVLYNWEERSQRHYLGHNDDIKCMAVHPDRIRVATGQGAGTSGRPLQPHVRIWDSVTLSTLHVIGFFDRGVTCVAFS 163 (626)
T ss_pred ccEEEEEeehhhhcccccCCCCceEEEeecCCceeeccCcccccCCCcCCCeeeecccccceeeeeeccccccceeeeec
Confidence 3344555566656667788999999999999998899875544 59999988888888888888899999999
Q ss_pred e--CCCeEEEe--eCCCeEEEEEcCCCceeEeccccCCceeEEEECCC-CCEEEEecCCCcEEEEEecCCCCCCcchhhh
Q psy18231 216 C--DSSQIASG--ASDKSVILWEVTTGQPVRRWREHASKVTCVKFNED-SSVVISGSQDNTVMMWDVKSRSHHPIQVRCL 290 (540)
Q Consensus 216 p--~~~~l~s~--s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~ 290 (540)
+ .|.+|... +.+..+.+||...+......+..+..|....|+|. .+++++.+ .|.+.+|+++.+.....+
T Consensus 164 k~~~G~~l~~vD~s~~h~lSVWdWqk~~~~~~vk~sne~v~~a~FHPtd~nliit~G-k~H~~Fw~~~~~~l~k~~---- 238 (626)
T KOG2106|consen 164 KINGGSLLCAVDDSNPHMLSVWDWQKKAKLGPVKTSNEVVFLATFHPTDPNLIITCG-KGHLYFWTLRGGSLVKRQ---- 238 (626)
T ss_pred ccCCCceEEEecCCCccccchhhchhhhccCcceeccceEEEEEeccCCCcEEEEeC-CceEEEEEccCCceEEEe----
Confidence 8 45555543 44567899999998887777778889999999994 45666665 589999998877531111
Q ss_pred hHhhhhcCCceeEEEEeecccccccccCceeeEEEeeeecccccceeeeeeccceeEEEeecccceecccccccccccch
Q psy18231 291 NEALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSC 370 (540)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (540)
-.+....- ..+.++.+..++.++..|..|...+|......+..
T Consensus 239 ----------------------------------~~fek~ek-k~Vl~v~F~engdviTgDS~G~i~Iw~~~~~~~~k-- 281 (626)
T KOG2106|consen 239 ----------------------------------GIFEKREK-KFVLCVTFLENGDVITGDSGGNILIWSKGTNRISK-- 281 (626)
T ss_pred ----------------------------------eccccccc-eEEEEEEEcCCCCEEeecCCceEEEEeCCCceEEe--
Confidence 01111111 33444555555566666666666555543332222
Q ss_pred hhhhhcccccEEEEEecC-CeeEeeeCCCeEEEEeCCCCce-----------EEe-------------------------
Q psy18231 371 FQALKEARDSITSVHVSD-HEILTASLDCRIRRYDIRTGNL-----------VTD------------------------- 413 (540)
Q Consensus 371 ~~~~~~~~~~v~~l~~~~-~~l~~~~~dg~i~iwd~~~~~~-----------~~~------------------------- 413 (540)
....|.+.|.++..-. ..|++|+.|..|..||-.-.+. ++.
T Consensus 282 --~~~aH~ggv~~L~~lr~GtllSGgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~ 359 (626)
T KOG2106|consen 282 --QVHAHDGGVFSLCMLRDGTLLSGGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENG 359 (626)
T ss_pred --EeeecCCceEEEEEecCccEeecCccceEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCC
Confidence 3338999999999887 8888899999999998431110 000
Q ss_pred ------eeCCceEEEEEecCCcEEEeecCCCeEEEEeccccchhhhhccCcCCcceEEEEecCCCCeEEEeeCCCcEEEE
Q psy18231 414 ------YVGEPIVDACFTRDCQCILTCSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKW 487 (540)
Q Consensus 414 ------~~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~s~~~~~l~s~s~dg~i~iw 487 (540)
.++.....++.+|+.+.+++++.|+.+++|+ ..+++.+.. -..+..+. .|+|.| .+|.|+..|...+.
T Consensus 360 f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~~-~~d~~~~~--~fhpsg-~va~Gt~~G~w~V~ 433 (626)
T KOG2106|consen 360 FTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTKI-IEDPAECA--DFHPSG-VVAVGTATGRWFVL 433 (626)
T ss_pred ceEEEEecccceeeEEcCCChhheeeccCcceEEEcc--CCceeEEEE-ecCceeEe--eccCcc-eEEEeeccceEEEE
Confidence 0124577888999999999999999999999 333332222 22334445 899999 99999999999999
Q ss_pred EecCCcceeEEEecccceeeeEEEEcCCCcEEEeec-CCeeEEEEccccc
Q psy18231 488 QLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC-GNNVKLWTAEEDY 536 (540)
Q Consensus 488 d~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~-d~~i~iw~~~~~~ 536 (540)
|.++...+..-. . +++++.++|+|+|.+||.|+ |+.|+||.++.+.
T Consensus 434 d~e~~~lv~~~~--d-~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g 480 (626)
T KOG2106|consen 434 DTETQDLVTIHT--D-NEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANG 480 (626)
T ss_pred ecccceeEEEEe--c-CCceEEEEEcCCCCEEEEecCCCeEEEEEECCCC
Confidence 998855554444 3 88999999999999999999 9999999997653
|
|
| >KOG0268|consensus | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.4e-27 Score=201.48 Aligned_cols=239 Identities=15% Similarity=0.297 Sum_probs=193.5
Q ss_pred EEEeecCCcceeEEEEeeCC-CeEEEeeCCCeEEEEEcCCCceeEeccccCCceeEEEECCCCCEEEEecCCCcEEEEEe
Q psy18231 199 LKTYGGHAHEVNDATAACDS-SQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDV 277 (540)
Q Consensus 199 ~~~~~~h~~~v~~l~~sp~~-~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~ 277 (540)
+..+.+|.+.|.+++=+|.. ..+++|+.||.|+|||+.+..++..++.|.+.|..+++.. ..+++++.|++|+.|.+
T Consensus 59 v~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~ 136 (433)
T KOG0268|consen 59 VGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWKI 136 (433)
T ss_pred hhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecc--cceEEecCCcceeeeec
Confidence 45678999999999999976 7799999999999999999999999999999999999986 57889999999999987
Q ss_pred cCCCCCCcchhhhhHhhhhcCCceeEEEEeecccccccccCceeeEEEeeeecccccceeeeeeccceeEEEeeccccee
Q psy18231 278 KSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQ 357 (540)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (540)
+... ..
T Consensus 137 ~~~p---~~----------------------------------------------------------------------- 142 (433)
T KOG0268|consen 137 DGPP---LH----------------------------------------------------------------------- 142 (433)
T ss_pred cCCc---ce-----------------------------------------------------------------------
Confidence 6531 11
Q ss_pred cccccccccccchhhhhhcccccEEEEEecC--CeeEeeeCCCeEEEEeCCCCceEEeeeC--CceEEEEEecCC-cEEE
Q psy18231 358 IGDVTPISIHNSCFQALKEARDSITSVHVSD--HEILTASLDCRIRRYDIRTGNLVTDYVG--EPIVDACFTRDC-QCIL 432 (540)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~--~~i~~~~~sp~~-~~l~ 432 (540)
++ .....+..+.-+. +.+++++. .|.|||.+-..++..+.- ..|.++.|+|.. ..|+
T Consensus 143 ---------------ti-lg~s~~~gIdh~~~~~~FaTcGe--~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILa 204 (433)
T KOG0268|consen 143 ---------------TI-LGKSVYLGIDHHRKNSVFATCGE--QIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILA 204 (433)
T ss_pred ---------------ee-eccccccccccccccccccccCc--eeeecccccCCccceeecCCCceeEEecCCCcchhee
Confidence 00 0112233343333 55677665 489999998888888763 689999999955 5677
Q ss_pred eecCCCeEEEEeccccchhhhhccCcCCcceEEEEecCCCCeEEEeeCCCcEEEEEecCC-cceeEEEecccceeeeEEE
Q psy18231 433 TCSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDS-SQISTLIHSVGKAVVNSLC 511 (540)
Q Consensus 433 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~s~~~~~l~s~s~dg~i~iwd~~~~-~~~~~~~~~~~~~~v~~l~ 511 (540)
++..|+.|.+||++++.+++.+.-.. .-..+ +|+|.+--+++|++|..++.||++.- +++.... +|.+.|.+++
T Consensus 205 s~~sDrsIvLyD~R~~~Pl~KVi~~m-RTN~I--swnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~--dhvsAV~dVd 279 (433)
T KOG0268|consen 205 SCASDRSIVLYDLRQASPLKKVILTM-RTNTI--CWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHK--DHVSAVMDVD 279 (433)
T ss_pred eeccCCceEEEecccCCccceeeeec-cccce--ecCccccceeeccccccceehhhhhhcccchhhc--ccceeEEEec
Confidence 77799999999999999887664322 22345 89997777999999999999999875 4566666 8999999999
Q ss_pred EcCCCcEEEeec-CCeeEEEEccccc
Q psy18231 512 SHPTRKHIMSAC-GNNVKLWTAEEDY 536 (540)
Q Consensus 512 ~s~d~~~l~s~~-d~~i~iw~~~~~~ 536 (540)
|||.|+-+++|+ |.+|+||.+..+-
T Consensus 280 fsptG~EfvsgsyDksIRIf~~~~~~ 305 (433)
T KOG0268|consen 280 FSPTGQEFVSGSYDKSIRIFPVNHGH 305 (433)
T ss_pred cCCCcchhccccccceEEEeecCCCc
Confidence 999999999999 9999999987653
|
|
| >KOG4328|consensus | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.2e-25 Score=197.41 Aligned_cols=294 Identities=17% Similarity=0.190 Sum_probs=223.3
Q ss_pred cccccceeeeeecCeEEEEeCCCC--CEEEEeeCCCcEEEEcCCCC----eeEEEeecCCcceeEEEEee-CCCeEEEee
Q psy18231 153 RPLTVNRELFVLSGLMHTRFPVDG--SYCLTCGSDKKIKLWNPYRN----LLLKTYGGHAHEVNDATAAC-DSSQIASGA 225 (540)
Q Consensus 153 ~~~~~~~~~~h~~~v~~v~~spdg--~~lat~~~dg~i~iwd~~~~----~~~~~~~~h~~~v~~l~~sp-~~~~l~s~s 225 (540)
+....+....|.++|++++|+|.. +++|+|...|+|-+||+.+. .-+..+..|..+|.++.|+| +...+++.|
T Consensus 175 ~~~~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssS 254 (498)
T KOG4328|consen 175 DYRILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSS 254 (498)
T ss_pred cceecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeec
Confidence 333344455689999999999954 57889999999999999522 33556778999999999999 566899999
Q ss_pred CCCeEEEEEcCCCce--eEeccccCCceeEEEECCCCCEEEEecCCCcEEEEEecCCCCCCcchhhhhHhhhhcCCceeE
Q psy18231 226 SDKSVILWEVTTGQP--VRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQVRCLNEALKEARDSITS 303 (540)
Q Consensus 226 ~dg~i~iwd~~~~~~--~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (540)
.||+|++-|++.+.. +..+......+..+.|+.+...++.+..=|...+||+++...
T Consensus 255 yDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s--------------------- 313 (498)
T KOG4328|consen 255 YDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGS--------------------- 313 (498)
T ss_pred cCceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCc---------------------
Confidence 999999999987643 333333455678888988877788888778999999998762
Q ss_pred EEEeecccccccccCceeeEEEeeeecccccceeeeeeccceeEEEeecccceecccccccccccchhhhhhcccccEEE
Q psy18231 304 VHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEARDSITS 383 (540)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 383 (540)
....+.-|...|.+
T Consensus 314 ------------------------------------------------------------------~~~~~~lh~kKI~s 327 (498)
T KOG4328|consen 314 ------------------------------------------------------------------EYENLRLHKKKITS 327 (498)
T ss_pred ------------------------------------------------------------------cchhhhhhhcccce
Confidence 11145567779999
Q ss_pred EEecC---CeeEeeeCCCeEEEEeCCCCce-----EEeee-CCceEEEEEecCCcEEEeecCCCeEEEEecc----ccch
Q psy18231 384 VHVSD---HEILTASLDCRIRRYDIRTGNL-----VTDYV-GEPIVDACFTRDCQCILTCSTDECLRLFDKA----TGEL 450 (540)
Q Consensus 384 l~~~~---~~l~~~~~dg~i~iwd~~~~~~-----~~~~~-~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~----~~~~ 450 (540)
++++| .++++++.|++.+|||++.-.. +..+. ...|.++.|||.+-.|++.+.|..|+|||.. ..++
T Consensus 328 v~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p 407 (498)
T KOG4328|consen 328 VALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEP 407 (498)
T ss_pred eecCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCc
Confidence 99998 8899999999999999985432 33333 3689999999988889999999999999983 3334
Q ss_pred hhhhcc---CcCCcceEEEEecCCCCeEEEeeCCCcEEEEEecCCcceeEEEecccceeeeE-EEEcCCCcEEEeec--C
Q psy18231 451 LEEYKG---HKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNS-LCSHPTRKHIMSAC--G 524 (540)
Q Consensus 451 ~~~~~~---~~~~v~~~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~-l~~s~d~~~l~s~~--d 524 (540)
..++.. +...++.+...|.|+..++++|-.-..|-|+|-..++.+..+..+. ...|.+ ..|+|-+..+++|+ .
T Consensus 408 ~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~-~~tI~~vn~~HP~~~~~~aG~~s~ 486 (498)
T KOG4328|consen 408 LGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDPE-SSTIPSVNEFHPMRDTLAAGGNSS 486 (498)
T ss_pred cceeeccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCcc-ccccccceeecccccceeccCCcc
Confidence 433331 1223445556899999999999999999999977777677765322 223444 47999988677776 7
Q ss_pred CeeEEEEccc
Q psy18231 525 NNVKLWTAEE 534 (540)
Q Consensus 525 ~~i~iw~~~~ 534 (540)
|.|.||--+.
T Consensus 487 Gki~vft~k~ 496 (498)
T KOG4328|consen 487 GKIYVFTNKK 496 (498)
T ss_pred ceEEEEecCC
Confidence 8888887543
|
|
| >KOG0641|consensus | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.5e-24 Score=173.36 Aligned_cols=245 Identities=14% Similarity=0.240 Sum_probs=195.9
Q ss_pred CCcceeEEEEeeCCCeEEEeeCCCeEEEEEcC------CCc---------eeEeccccCCceeEEEECCCCCEEEEecCC
Q psy18231 205 HAHEVNDATAACDSSQIASGASDKSVILWEVT------TGQ---------PVRRWREHASKVTCVKFNEDSSVVISGSQD 269 (540)
Q Consensus 205 h~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~------~~~---------~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d 269 (540)
....|.+++|+|.|.+.+.|+...+++|--.. .+. ....-+.|.+.|+|.+|+|+|.++++|+.|
T Consensus 31 dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~geliatgsnd 110 (350)
T KOG0641|consen 31 DSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIATGSND 110 (350)
T ss_pred chhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCeEEecCCC
Confidence 56789999999999999999999999887442 211 112234689999999999999999999999
Q ss_pred CcEEEEEecCCCCCCcchhhhhHhhhhcCCceeEEEEeecccccccccCceeeEEEeeeecccccceeeeeeccceeEEE
Q psy18231 270 NTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVL 349 (540)
Q Consensus 270 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (540)
++|++..+........-
T Consensus 111 k~ik~l~fn~dt~~~~g--------------------------------------------------------------- 127 (350)
T KOG0641|consen 111 KTIKVLPFNADTCNATG--------------------------------------------------------------- 127 (350)
T ss_pred ceEEEEecccccccccC---------------------------------------------------------------
Confidence 99999876654321100
Q ss_pred eecccceecccccccccccchhhhhhcccccEEEEEecC------CeeEeee-CCCeEEEEeCCCCceEEeeeCCc--eE
Q psy18231 350 LDFLGSTQIGDVTPISIHNSCFQALKEARDSITSVHVSD------HEILTAS-LDCRIRRYDIRTGNLVTDYVGEP--IV 420 (540)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~------~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~--i~ 420 (540)
.-..+.-|.+.|..++|-. .+|++++ .|..|++-|...++..+.+.++. |.
T Consensus 128 --------------------~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~sghtghil 187 (350)
T KOG0641|consen 128 --------------------HDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALSGHTGHIL 187 (350)
T ss_pred --------------------cceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeecCCcccEE
Confidence 0014456788899999853 4566554 57788888999999999998753 43
Q ss_pred EEEEecCCcEEEeecCCCeEEEEeccccchhhhhcc--Cc-----CCcceEEEEecCCCCeEEEeeCCCcEEEEEecCCc
Q psy18231 421 DACFTRDCQCILTCSTDECLRLFDKATGELLEEYKG--HK-----SGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSS 493 (540)
Q Consensus 421 ~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~--~~-----~~v~~~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~ 493 (540)
++ ++-+|-++++|+.|.+|++||++-..++.++.. |. ..|..+ +..|.|++|++|-.|....+||++-++
T Consensus 188 al-yswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav--~vdpsgrll~sg~~dssc~lydirg~r 264 (350)
T KOG0641|consen 188 AL-YSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAV--AVDPSGRLLASGHADSSCMLYDIRGGR 264 (350)
T ss_pred EE-EEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEE--EECCCcceeeeccCCCceEEEEeeCCc
Confidence 33 345789999999999999999998877766542 22 334444 889999999999999999999999999
Q ss_pred ceeEEEecccceeeeEEEEcCCCcEEEeec-CCeeEEEEcccccC
Q psy18231 494 QISTLIHSVGKAVVNSLCSHPTRKHIMSAC-GNNVKLWTAEEDYG 537 (540)
Q Consensus 494 ~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~-d~~i~iw~~~~~~~ 537 (540)
.++.+. .|...|.++.|||...||.+++ |..|++=|++.++.
T Consensus 265 ~iq~f~--phsadir~vrfsp~a~yllt~syd~~ikltdlqgdla 307 (350)
T KOG0641|consen 265 MIQRFH--PHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLA 307 (350)
T ss_pred eeeeeC--CCccceeEEEeCCCceEEEEecccceEEEeecccchh
Confidence 999999 8999999999999999999999 99999999987654
|
|
| >KOG2919|consensus | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.6e-24 Score=183.64 Aligned_cols=275 Identities=18% Similarity=0.283 Sum_probs=216.9
Q ss_pred eEEEEeCCCCCEEEEeeCCCcEEEEcCCCC------------eeEEEee-cCCcceeEEEEe-------eCCCeEEEeeC
Q psy18231 167 LMHTRFPVDGSYCLTCGSDKKIKLWNPYRN------------LLLKTYG-GHAHEVNDATAA-------CDSSQIASGAS 226 (540)
Q Consensus 167 v~~v~~spdg~~lat~~~dg~i~iwd~~~~------------~~~~~~~-~h~~~v~~l~~s-------p~~~~l~s~s~ 226 (540)
...+.|||||..|++-+.|..+.+|++... +...+++ .....|+..+|- |+..++++.+.
T Consensus 52 ~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr 131 (406)
T KOG2919|consen 52 LKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSR 131 (406)
T ss_pred hccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeeccc
Confidence 457889999999999999999999997532 0111111 135668888886 57789999999
Q ss_pred CCeEEEEEcCCCceeEeccc--cCC---ceeEEEECCCCCEEEEecCCCcEEEEEe-cCCCCCCcchhhhhHhhhhcCCc
Q psy18231 227 DKSVILWEVTTGQPVRRWRE--HAS---KVTCVKFNEDSSVVISGSQDNTVMMWDV-KSRSHHPIQVRCLNEALKEARDS 300 (540)
Q Consensus 227 dg~i~iwd~~~~~~~~~~~~--h~~---~v~~~~~~~~~~~l~s~~~dg~i~iwd~-~~~~~~~~~~~~~~~~~~~~~~~ 300 (540)
+.-|++||.-+|+....+.+ |.+ ...+++|+|||.+|+.|- ...|+++|+ +.+...+...
T Consensus 132 ~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGy-krcirvFdt~RpGr~c~vy~------------- 197 (406)
T KOG2919|consen 132 DQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGY-KRCIRVFDTSRPGRDCPVYT------------- 197 (406)
T ss_pred cCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeecc-cceEEEeeccCCCCCCcchh-------------
Confidence 99999999999988776653 443 346899999999998764 689999999 4443211110
Q ss_pred eeEEEEeecccccccccCceeeEEEeeeecccccceeeeeeccceeEEEeecccceecccccccccccchhhhhhccccc
Q psy18231 301 ITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEARDS 380 (540)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (540)
...+...+..+.
T Consensus 198 --------------------------------------------------------------------t~~~~k~gq~gi 209 (406)
T KOG2919|consen 198 --------------------------------------------------------------------TVTKGKFGQKGI 209 (406)
T ss_pred --------------------------------------------------------------------hhhcccccccce
Confidence 000012244678
Q ss_pred EEEEEecC---CeeEeeeCCCeEEEEeCCCCceEEeeeC--CceEEEEEecCCcEEEeecC-CCeEEEEeccc-cchhhh
Q psy18231 381 ITSVHVSD---HEILTASLDCRIRRYDIRTGNLVTDYVG--EPIVDACFTRDCQCILTCST-DECLRLFDKAT-GELLEE 453 (540)
Q Consensus 381 v~~l~~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~~--~~i~~~~~sp~~~~l~~~~~-dg~i~i~d~~~-~~~~~~ 453 (540)
|.+++++| ..+++++....+-||.-..+.++..+.+ +.|+.+.|.++|+.|.+|+. |..|..||++. +.++..
T Consensus 210 isc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~ 289 (406)
T KOG2919|consen 210 ISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPVYA 289 (406)
T ss_pred eeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccchhhh
Confidence 89999999 6899999999999999999999888876 58999999999999999886 78899999986 567888
Q ss_pred hccCcC-CcceEEEEecCCCCeEEEeeCCCcEEEEEecC-CcceeEEEecccceeeeEEEEcCCCcEEEeecCC
Q psy18231 454 YKGHKS-GDFRIECCLDSKDSQIFCGSSDGKIYKWQLVD-SSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGN 525 (540)
Q Consensus 454 ~~~~~~-~v~~~~~~~s~~~~~l~s~s~dg~i~iwd~~~-~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~d~ 525 (540)
+..|.. .-..+-+...|++++|++|+.||.|++||+++ +..+..+. .|...++.++++|--.++++++..
T Consensus 290 L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~--~~sd~vNgvslnP~mpilatssGq 361 (406)
T KOG2919|consen 290 LERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTG--NYSDTVNGVSLNPIMPILATSSGQ 361 (406)
T ss_pred hhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCcccccc--cccccccceecCcccceeeeccCc
Confidence 888876 44456567789999999999999999999988 67677777 799999999999998888888743
|
|
| >KOG0269|consensus | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.6e-26 Score=214.97 Aligned_cols=239 Identities=16% Similarity=0.311 Sum_probs=200.1
Q ss_pred cCeEEEEeCC-CCCEEEEeeCCCcEEEEcCCC---CeeEEEeecCCcceeEEEEee-CCCeEEEeeCCCeEEEEEcCCCc
Q psy18231 165 SGLMHTRFPV-DGSYCLTCGSDKKIKLWNPYR---NLLLKTYGGHAHEVNDATAAC-DSSQIASGASDKSVILWEVTTGQ 239 (540)
Q Consensus 165 ~~v~~v~~sp-dg~~lat~~~dg~i~iwd~~~---~~~~~~~~~h~~~v~~l~~sp-~~~~l~s~s~dg~i~iwd~~~~~ 239 (540)
..+..|+|+. +.++|||++..|.|.+||+.. .+.+..|..|+..++++.|++ ...+|++||.||+|++||++..+
T Consensus 88 ~S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~ 167 (839)
T KOG0269|consen 88 YSAADVKWGQLYSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKK 167 (839)
T ss_pred eehhhcccccchhhhheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeeccc
Confidence 3456677765 677999999999999999987 566778899999999999998 56789999999999999999999
Q ss_pred eeEeccccCCceeEEEECC-CCCEEEEecCCCcEEEEEecCCCCCCcchhhhhHhhhhcCCceeEEEEeecccccccccC
Q psy18231 240 PVRRWREHASKVTCVKFNE-DSSVVISGSQDNTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHLSNG 318 (540)
Q Consensus 240 ~~~~~~~h~~~v~~~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (540)
...++.+....|..+.|+| .+..++++.+.|.+++||++....
T Consensus 168 S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r------------------------------------ 211 (839)
T KOG0269|consen 168 SKSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDR------------------------------------ 211 (839)
T ss_pred ccccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchh------------------------------------
Confidence 9999999999999999999 678999999999999999987652
Q ss_pred ceeeEEEeeeecccccceeeeeeccceeEEEeecccceecccccccccccchhhhhhcccccEEEEEecC--CeeEeeeC
Q psy18231 319 LLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEARDSITSVHVSD--HEILTASL 396 (540)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~--~~l~~~~~ 396 (540)
+...+..|.++|.|+.|+| .+|++|+.
T Consensus 212 ---------------------------------------------------~~~k~~AH~GpV~c~nwhPnr~~lATGGR 240 (839)
T KOG0269|consen 212 ---------------------------------------------------CEKKLTAHNGPVLCLNWHPNREWLATGGR 240 (839)
T ss_pred ---------------------------------------------------HHHHhhcccCceEEEeecCCCceeeecCC
Confidence 4557889999999999999 89999999
Q ss_pred CCeEEEEeCCCCce--EEeee-CCceEEEEEecCCcE-EEeecC--CCeEEEEecccc-chhhhhccCcCCcceEEEEec
Q psy18231 397 DCRIRRYDIRTGNL--VTDYV-GEPIVDACFTRDCQC-ILTCST--DECLRLFDKATG-ELLEEYKGHKSGDFRIECCLD 469 (540)
Q Consensus 397 dg~i~iwd~~~~~~--~~~~~-~~~i~~~~~sp~~~~-l~~~~~--dg~i~i~d~~~~-~~~~~~~~~~~~v~~~~~~~s 469 (540)
|+.|+|||+.+++. +.+++ ..++.++.|-|+..+ |++++. |-.|+|||++.. -+..++..|...++.+ +|.
T Consensus 241 DK~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i--~W~ 318 (839)
T KOG0269|consen 241 DKMVKIWDMTDSRAKPKHTINTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGI--AWD 318 (839)
T ss_pred CccEEEEeccCCCccceeEEeecceeeeeeeccCccchhhhhhccccceEEEEeeccccccceeeeccCccccce--ecc
Confidence 99999999986643 44444 479999999997665 555543 778999999754 4567889999998888 554
Q ss_pred C-CCCeEEEeeCCCcEEEEEecCC
Q psy18231 470 S-KDSQIFCGSSDGKIYKWQLVDS 492 (540)
Q Consensus 470 ~-~~~~l~s~s~dg~i~iwd~~~~ 492 (540)
. |-..+.+++.||+|..-.++++
T Consensus 319 ~~d~~~l~s~sKD~tv~qh~~kna 342 (839)
T KOG0269|consen 319 SGDRINLWSCSKDGTVLQHLFKNA 342 (839)
T ss_pred CCCceeeEeecCccHHHHhhhhcc
Confidence 3 4556899999999876655554
|
|
| >KOG0269|consensus | Back alignment and domain information |
|---|
Probab=99.94 E-value=6.8e-26 Score=213.10 Aligned_cols=281 Identities=16% Similarity=0.227 Sum_probs=215.5
Q ss_pred ecCeEEEEeCCCCCEEEEeeCCCcEEEEcCCCC----eeEEEeecCC---cceeEEEEee-CCCeEEEeeCCCeEEEEEc
Q psy18231 164 LSGLMHTRFPVDGSYCLTCGSDKKIKLWNPYRN----LLLKTYGGHA---HEVNDATAAC-DSSQIASGASDKSVILWEV 235 (540)
Q Consensus 164 ~~~v~~v~~spdg~~lat~~~dg~i~iwd~~~~----~~~~~~~~h~---~~v~~l~~sp-~~~~l~s~s~dg~i~iwd~ 235 (540)
.....+|+.+++-..|+.++. ..+.||.+... .+...++... -.+..+.|.. +.++|||++..|.|.+||+
T Consensus 39 k~~~nAIs~nr~~~qiv~AGr-s~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~nG~i~vWdl 117 (839)
T KOG0269|consen 39 KAKANAISVNRDINQIVVAGR-SLLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCSTNGVISVWDL 117 (839)
T ss_pred ccccceEeecCCcceeEEecc-cceeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhheeecCCCcEEEEec
Confidence 456778888899888888874 57778876543 2222222211 2344567765 6788999999999999999
Q ss_pred CC---CceeEeccccCCceeEEEECC-CCCEEEEecCCCcEEEEEecCCCCCCcchhhhhHhhhhcCCceeEEEEeeccc
Q psy18231 236 TT---GQPVRRWREHASKVTCVKFNE-DSSVVISGSQDNTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKST 311 (540)
Q Consensus 236 ~~---~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (540)
.. .+.+..+..|...++++.|++ ..++|++||.||+|++||++..+...
T Consensus 118 nk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~--------------------------- 170 (839)
T KOG0269|consen 118 NKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKS--------------------------- 170 (839)
T ss_pred CccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccc---------------------------
Confidence 87 566778999999999999998 56799999999999999999877311
Q ss_pred ccccccCceeeEEEeeeecccccceeeeeeccceeEEEeecccceecccccccccccchhhhhhcccccEEEEEecC---
Q psy18231 312 KNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEARDSITSVHVSD--- 388 (540)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~--- 388 (540)
++.+....|..+.|+|
T Consensus 171 -------------------------------------------------------------t~~~nSESiRDV~fsp~~~ 189 (839)
T KOG0269|consen 171 -------------------------------------------------------------TFRSNSESIRDVKFSPGYG 189 (839)
T ss_pred -------------------------------------------------------------cccccchhhhceeeccCCC
Confidence 3444677899999998
Q ss_pred CeeEeeeCCCeEEEEeCCCCce-EE--eeeCCceEEEEEecCCcEEEeecCCCeEEEEeccccchhhhhccCc-CCcceE
Q psy18231 389 HEILTASLDCRIRRYDIRTGNL-VT--DYVGEPIVDACFTRDCQCILTCSTDECLRLFDKATGELLEEYKGHK-SGDFRI 464 (540)
Q Consensus 389 ~~l~~~~~dg~i~iwd~~~~~~-~~--~~~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-~~v~~~ 464 (540)
..++++...|.+++||++.... .. ..+.++|.++.|+|++.+||+|+.|+.|+|||+.+.+.-.....++ .++..+
T Consensus 190 ~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tInTiapv~rV 269 (839)
T KOG0269|consen 190 NKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTINTIAPVGRV 269 (839)
T ss_pred ceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCccceeEEeecceeeee
Confidence 8899999999999999997643 33 3345799999999999999999999999999998765433333332 456666
Q ss_pred EEEecCCCCe-EEEee--CCCcEEEEEecCCc-ceeEEEecccceeeeEEEEcC-CCcEEEeec-CCeeEEEEcccccC
Q psy18231 465 ECCLDSKDSQ-IFCGS--SDGKIYKWQLVDSS-QISTLIHSVGKAVVNSLCSHP-TRKHIMSAC-GNNVKLWTAEEDYG 537 (540)
Q Consensus 465 ~~~~s~~~~~-l~s~s--~dg~i~iwd~~~~~-~~~~~~~~~~~~~v~~l~~s~-d~~~l~s~~-d~~i~iw~~~~~~~ 537 (540)
.|-|..++ ||+++ .|-.|+|||++..- +..++. .|...++.++|.. |...|.+++ |++|..-.+++...
T Consensus 270 --kWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~--eH~~~vt~i~W~~~d~~~l~s~sKD~tv~qh~~knat~ 344 (839)
T KOG0269|consen 270 --KWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFL--EHTDSVTGIAWDSGDRINLWSCSKDGTVLQHLFKNATT 344 (839)
T ss_pred --eeccCccchhhhhhccccceEEEEeeccccccceeee--ccCccccceeccCCCceeeEeecCccHHHHhhhhcccC
Confidence 78888776 77765 67889999997654 455666 8999999999964 567788888 99887666655544
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.2e-24 Score=199.97 Aligned_cols=278 Identities=11% Similarity=0.117 Sum_probs=204.2
Q ss_pred hhcccccceeeeecccccce--eeeeecCeEEEEeCCCCCEE-EEeeCCCcEEEEcCCCCeeEEEeecCCcceeEEEEee
Q psy18231 140 LYELPKEWSIRVYRPLTVNR--ELFVLSGLMHTRFPVDGSYC-LTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAAC 216 (540)
Q Consensus 140 ~~~~~~~~~i~~~~~~~~~~--~~~h~~~v~~v~~spdg~~l-at~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp 216 (540)
+.+.+.++.+++|+..+... ...+...+.+++|+|+|+.+ ++++.++.|++||..+++.+..+..+.. +..++|+|
T Consensus 4 ~~s~~~d~~v~~~d~~t~~~~~~~~~~~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-~~~~~~~~ 82 (300)
T TIGR03866 4 YVSNEKDNTISVIDTATLEVTRTFPVGQRPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPD-PELFALHP 82 (300)
T ss_pred EEEecCCCEEEEEECCCCceEEEEECCCCCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCC-ccEEEECC
Confidence 34556778899999866542 23334557889999999987 5667789999999999988877765443 56789999
Q ss_pred CCCeEEEe-eCCCeEEEEEcCCCceeEeccccCCceeEEEECCCCCEEEEecCCC-cEEEEEecCCCCCCcchhhhhHhh
Q psy18231 217 DSSQIASG-ASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDN-TVMMWDVKSRSHHPIQVRCLNEAL 294 (540)
Q Consensus 217 ~~~~l~s~-s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg-~i~iwd~~~~~~~~~~~~~~~~~~ 294 (540)
+++.++++ +.|+.|++||+.+++.+..+.. ...+.+++|+|+++++++++.++ .+.+||..+.+.. .
T Consensus 83 ~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~-~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~--~-------- 151 (300)
T TIGR03866 83 NGKILYIANEDDNLVTVIDIETRKVLAEIPV-GVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIV--D-------- 151 (300)
T ss_pred CCCEEEEEcCCCCeEEEEECCCCeEEeEeeC-CCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEE--E--------
Confidence 99977654 5689999999998887776653 34568899999999999888765 4667787654310 0
Q ss_pred hhcCCceeEEEEeecccccccccCceeeEEEeeeecccccceeeeeeccceeEEEeecccceecccccccccccchhhhh
Q psy18231 295 KEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQAL 374 (540)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (540)
..
T Consensus 152 ------------------------------------------------------------------------------~~ 153 (300)
T TIGR03866 152 ------------------------------------------------------------------------------NV 153 (300)
T ss_pred ------------------------------------------------------------------------------EE
Confidence 00
Q ss_pred hcccccEEEEEecC--CeeE-eeeCCCeEEEEeCCCCceEEeeeC---------CceEEEEEecCCcEEEe-ecCCCeEE
Q psy18231 375 KEARDSITSVHVSD--HEIL-TASLDCRIRRYDIRTGNLVTDYVG---------EPIVDACFTRDCQCILT-CSTDECLR 441 (540)
Q Consensus 375 ~~~~~~v~~l~~~~--~~l~-~~~~dg~i~iwd~~~~~~~~~~~~---------~~i~~~~~sp~~~~l~~-~~~dg~i~ 441 (540)
.....+.+++|++ +.++ ++..++.|++||+++++.+..+.. .....++|+|+++++++ .+.++.+.
T Consensus 154 -~~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~ 232 (300)
T TIGR03866 154 -LVDQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVA 232 (300)
T ss_pred -EcCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEE
Confidence 0011234577777 5554 445699999999999987765531 12356889999998554 45567899
Q ss_pred EEeccccchhhhhccCcCCcceEEEEecCCCCeEEEe-eCCCcEEEEEecCCcceeEEEecccceeeeEEEEcC
Q psy18231 442 LFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCG-SSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHP 514 (540)
Q Consensus 442 i~d~~~~~~~~~~~~~~~~v~~~~~~~s~~~~~l~s~-s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~ 514 (540)
+||.++++.+..+. +...+..+ +|+|+|++|+++ +.+|.|++||+.+++.+..+. .. ...+.++++|
T Consensus 233 v~d~~~~~~~~~~~-~~~~~~~~--~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~--~~-~~~~~~~~~~ 300 (300)
T TIGR03866 233 VVDAKTYEVLDYLL-VGQRVWQL--AFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSIK--VG-RLPWGVVVRP 300 (300)
T ss_pred EEECCCCcEEEEEE-eCCCcceE--EECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEE--cc-cccceeEeCC
Confidence 99999887765543 33456666 899999999886 468999999999999999997 33 5568888875
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >KOG2445|consensus | Back alignment and domain information |
|---|
Probab=99.94 E-value=8.9e-25 Score=184.03 Aligned_cols=261 Identities=17% Similarity=0.252 Sum_probs=194.9
Q ss_pred eeeecCeEEEEeCCCCCEEEEeeCCCcEEEEcCCCC----eeEEEeecCCcceeEEEEee--CCCeEEEeeCCCeEEEEE
Q psy18231 161 LFVLSGLMHTRFPVDGSYCLTCGSDKKIKLWNPYRN----LLLKTYGGHAHEVNDATAAC--DSSQIASGASDKSVILWE 234 (540)
Q Consensus 161 ~~h~~~v~~v~~spdg~~lat~~~dg~i~iwd~~~~----~~~~~~~~h~~~v~~l~~sp--~~~~l~s~s~dg~i~iwd 234 (540)
.+|.+-|.++.|.+.|+++|+|+.|++|+|||..+. .+....+.|.+.|..+.|.+ -|+.+|+++.|+++.||.
T Consensus 10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWE 89 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWE 89 (361)
T ss_pred cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeee
Confidence 468889999999999999999999999999996433 56667789999999999976 689999999999999997
Q ss_pred cCCC---------ceeEeccccCCceeEEEECC--CCCEEEEecCCCcEEEEEecCCCCCCcchhhhhHhhhhcCCceeE
Q psy18231 235 VTTG---------QPVRRWREHASKVTCVKFNE--DSSVVISGSQDNTVMMWDVKSRSHHPIQVRCLNEALKEARDSITS 303 (540)
Q Consensus 235 ~~~~---------~~~~~~~~h~~~v~~~~~~~--~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (540)
-... ....++....+.|+.+.|.| -|-.|++++.||.++||+.........- .+..
T Consensus 90 E~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W--~Lq~----------- 156 (361)
T KOG2445|consen 90 EQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQW--TLQH----------- 156 (361)
T ss_pred ecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccc--hhhh-----------
Confidence 5211 12345666788999999999 5678999999999999987654310000 0000
Q ss_pred EEEeecccccccccCceeeEEEeeeecccccceeeeeeccceeEEEeecccceecccccccccccchhhhhhcccccEEE
Q psy18231 304 VHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEARDSITS 383 (540)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 383 (540)
++. ........+..+..|
T Consensus 157 --------------------------------------------------------Ei~------~~~~pp~~~~~~~~C 174 (361)
T KOG2445|consen 157 --------------------------------------------------------EIQ------NVIDPPGKNKQPCFC 174 (361)
T ss_pred --------------------------------------------------------hhh------hccCCcccccCcceE
Confidence 000 000122345667789
Q ss_pred EEecC-----CeeEeeeCC-----CeEEEEeCCCCc----eEEeeeC--CceEEEEEecC----CcEEEeecCCCeEEEE
Q psy18231 384 VHVSD-----HEILTASLD-----CRIRRYDIRTGN----LVTDYVG--EPIVDACFTRD----CQCILTCSTDECLRLF 443 (540)
Q Consensus 384 l~~~~-----~~l~~~~~d-----g~i~iwd~~~~~----~~~~~~~--~~i~~~~~sp~----~~~l~~~~~dg~i~i~ 443 (540)
+.|++ .+|++|+.+ +.+.||....+. .+.++.+ .+|+.++|.|+ -.+||+++.|| |+||
T Consensus 175 vsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~ 253 (361)
T KOG2445|consen 175 VSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIF 253 (361)
T ss_pred EeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecCc-EEEE
Confidence 99987 567777766 478888766443 2333333 68999999995 46799999999 9999
Q ss_pred ecccc--------------------chhhhhccCcCCcceEEEEecCCCCeEEEeeCCCcEEEEEecC---CcceeEEE
Q psy18231 444 DKATG--------------------ELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVD---SSQISTLI 499 (540)
Q Consensus 444 d~~~~--------------------~~~~~~~~~~~~v~~~~~~~s~~~~~l~s~s~dg~i~iwd~~~---~~~~~~~~ 499 (540)
.+... +.+..+..|.+.|+.+ .|+-.|..|++.+.||.||+|...- .++...++
T Consensus 254 ~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv--~wNmtGtiLsStGdDG~VRLWkany~n~~kC~sv~~ 330 (361)
T KOG2445|consen 254 KVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRV--RWNMTGTILSSTGDDGCVRLWKANYNNLWKCTSVLK 330 (361)
T ss_pred EEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEE--EEeeeeeEEeecCCCceeeehhhhhhhhheeeeEEe
Confidence 98731 2345678899999988 7888899999999999999998543 34555555
|
|
| >COG0042 tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.6e-27 Score=214.10 Aligned_cols=114 Identities=27% Similarity=0.415 Sum_probs=108.3
Q ss_pred cceecCCceEEeccCCCCCHHHHHHHHHcCC-CEEEeeeeecccccccchhhccccccCCCCCCEEEEEecCChhHHHHH
Q psy18231 10 RSTLLKNLKHCDSTLWTSKLNFRQLVRSHNV-DLCFTPMIIADSFIKSSKARNNEFSTSPEDTPLVVQFASNNHDDFVRA 88 (540)
Q Consensus 10 ~~~~~~~~~~~ap~~~~~~~~~r~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~ 88 (540)
..+.++++++||||+|+||+|||+++|++|+ +++|||||++++++++.+.....+...++|.|+++|++|++|+.+++|
T Consensus 5 ~~~~~~~~~~lAPM~gvtd~~fR~l~~~~ga~~~~~TEmv~~~~~~~~~~~~~~~~~~~~~e~p~~vQl~gsdp~~l~ea 84 (323)
T COG0042 5 GLIELRNRVILAPMAGVTDLPFRRLARELGAYDLLYTEMVSAKALLHGRKKFLLLLDELEEERPVAVQLGGSDPELLAEA 84 (323)
T ss_pred ccccccCcEEEecCCCCccHHHHHHHHHhCCCceEEEccEEEhhhccCCcchhhhcCcCCCCCCEEEEecCCCHHHHHHH
Confidence 4567799999999999999999999999999 999999999999999999999888888999999999999999999999
Q ss_pred HHHhcC-CCCeEeeccCCCceEEEeccccceecccc
Q psy18231 89 TQYVAP-HCNGVDLNCGCPQRWAIKEGYGCALLSKQ 123 (540)
Q Consensus 89 ~~~~~~-~~~~id~~~gc~~~~~~~~g~g~~l~~~~ 123 (540)
++++.+ ++++||+|+|||+..+.+.|.|++||+++
T Consensus 85 A~~~~~~g~~~IdlN~GCP~~~V~~~g~Ga~Ll~~p 120 (323)
T COG0042 85 AKIAEELGADIIDLNCGCPSPKVVKGGAGAALLKNP 120 (323)
T ss_pred HHHHHhcCCCEEeeeCCCChHHhcCCCcchhhcCCH
Confidence 999887 77999999999999999999999999995
|
|
| >KOG1036|consensus | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.8e-24 Score=181.33 Aligned_cols=244 Identities=15% Similarity=0.212 Sum_probs=195.7
Q ss_pred cccceeeeeccccc--ceeeeeecCeEEEEeCCCCCEEEEeeCCCcEEEEcCCCCeeEEEeecCCcceeEEEEeeCCCeE
Q psy18231 144 PKEWSIRVYRPLTV--NRELFVLSGLMHTRFPVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQI 221 (540)
Q Consensus 144 ~~~~~i~~~~~~~~--~~~~~h~~~v~~v~~spdg~~lat~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l 221 (540)
+-|+++++|+.... .....|..++.+++|.++. .+++|+.||.|+.+|+.++.... +..|..+|.|+.+++....+
T Consensus 32 sWDgslrlYdv~~~~l~~~~~~~~plL~c~F~d~~-~~~~G~~dg~vr~~Dln~~~~~~-igth~~~i~ci~~~~~~~~v 109 (323)
T KOG1036|consen 32 SWDGSLRLYDVPANSLKLKFKHGAPLLDCAFADES-TIVTGGLDGQVRRYDLNTGNEDQ-IGTHDEGIRCIEYSYEVGCV 109 (323)
T ss_pred eccCcEEEEeccchhhhhheecCCceeeeeccCCc-eEEEeccCceEEEEEecCCccee-eccCCCceEEEEeeccCCeE
Confidence 57888999987764 3567799999999999854 68899999999999998887554 45699999999999988899
Q ss_pred EEeeCCCeEEEEEcCCCceeEeccccCCceeEEEECCCCCEEEEecCCCcEEEEEecCCCCCCcchhhhhHhhhhcCCce
Q psy18231 222 ASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQVRCLNEALKEARDSI 301 (540)
Q Consensus 222 ~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (540)
++||.|++|++||.+.......+. ....|.++... ++.|+.|+.|..+.+||+++..... +
T Consensus 110 IsgsWD~~ik~wD~R~~~~~~~~d-~~kkVy~~~v~--g~~LvVg~~~r~v~iyDLRn~~~~~-q--------------- 170 (323)
T KOG1036|consen 110 ISGSWDKTIKFWDPRNKVVVGTFD-QGKKVYCMDVS--GNRLVVGTSDRKVLIYDLRNLDEPF-Q--------------- 170 (323)
T ss_pred EEcccCccEEEEeccccccccccc-cCceEEEEecc--CCEEEEeecCceEEEEEcccccchh-h---------------
Confidence 999999999999998755555553 34589988875 6789999999999999999876311 1
Q ss_pred eEEEEeecccccccccCceeeEEEeeeecccccceeeeeeccceeEEEeecccceecccccccccccchhhhhhcccccE
Q psy18231 302 TSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEARDSI 381 (540)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 381 (540)
......+-.+
T Consensus 171 ----------------------------------------------------------------------~reS~lkyqt 180 (323)
T KOG1036|consen 171 ----------------------------------------------------------------------RRESSLKYQT 180 (323)
T ss_pred ----------------------------------------------------------------------hccccceeEE
Confidence 0112234567
Q ss_pred EEEEecC--CeeEeeeCCCeEEEEeCCCC----ceEEeee------C-----CceEEEEEecCCcEEEeecCCCeEEEEe
Q psy18231 382 TSVHVSD--HEILTASLDCRIRRYDIRTG----NLVTDYV------G-----EPIVDACFTRDCQCILTCSTDECLRLFD 444 (540)
Q Consensus 382 ~~l~~~~--~~l~~~~~dg~i~iwd~~~~----~~~~~~~------~-----~~i~~~~~sp~~~~l~~~~~dg~i~i~d 444 (540)
.++++-| .-+++++-||.|.+=.++.. +....+. . .+|++++|+|-...|++|+.||.|.+||
T Consensus 181 R~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd 260 (323)
T KOG1036|consen 181 RCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWD 260 (323)
T ss_pred EEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccceEEecCCCceEEEcc
Confidence 7888877 77899999999987666544 2222221 1 4899999999999999999999999999
Q ss_pred ccccchhhhhccCcCCcceEEEEecCCCCeEEEeeC
Q psy18231 445 KATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSS 480 (540)
Q Consensus 445 ~~~~~~~~~~~~~~~~v~~~~~~~s~~~~~l~s~s~ 480 (540)
+.+.+.+..+..-...|..+ +|+.+|..||+++.
T Consensus 261 ~~~rKrl~q~~~~~~SI~sl--sfs~dG~~LAia~s 294 (323)
T KOG1036|consen 261 LFNRKRLKQLAKYETSISSL--SFSMDGSLLAIASS 294 (323)
T ss_pred CcchhhhhhccCCCCceEEE--EeccCCCeEEEEec
Confidence 99999999998776667666 89999999999873
|
|
| >KOG2048|consensus | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.5e-23 Score=193.27 Aligned_cols=264 Identities=15% Similarity=0.179 Sum_probs=195.2
Q ss_pred hhcccccceeeeecccccce--e--ee-eecCeEEEEeCCCCCEEEEeeCCCcEEEEcCCCCeeEEEeecCCcceeEEEE
Q psy18231 140 LYELPKEWSIRVYRPLTVNR--E--LF-VLSGLMHTRFPVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATA 214 (540)
Q Consensus 140 ~~~~~~~~~i~~~~~~~~~~--~--~~-h~~~v~~v~~spdg~~lat~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~ 214 (540)
++....++.|.+|++...-. . .+ -.+.|.+++|++.+ +|.+.+.+|.|.-||+.+++++..+....+.|++++.
T Consensus 40 lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e~~-RLFS~g~sg~i~EwDl~~lk~~~~~d~~gg~IWsiai 118 (691)
T KOG2048|consen 40 LAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAEGG-RLFSSGLSGSITEWDLHTLKQKYNIDSNGGAIWSIAI 118 (691)
T ss_pred eeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEccCC-eEEeecCCceEEEEecccCceeEEecCCCcceeEEEe
Confidence 55567888999999876321 1 12 33679999999554 6788888999999999999999999999999999999
Q ss_pred eeCCCeEEEeeCCCeEEEEEcCCCceeE--eccccCCceeEEEECCCCCEEEEecCCCcEEEEEecCCCCCCcchhhhhH
Q psy18231 215 ACDSSQIASGASDKSVILWEVTTGQPVR--RWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQVRCLNE 292 (540)
Q Consensus 215 sp~~~~l~s~s~dg~i~iwd~~~~~~~~--~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~ 292 (540)
+|.+..++.|+.||.+..++...++... .+...++.|.+++|+|++..+++|+.||.|++||...+....+....+..
T Consensus 119 ~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~ 198 (691)
T KOG2048|consen 119 NPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDR 198 (691)
T ss_pred CCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccCceEEEEEcCCCceEEEeeecccc
Confidence 9999999999999988888887776543 34456789999999999999999999999999999887632211101110
Q ss_pred hhhhcCCceeEEEEeecccccccccCceeeEEEeeeecccccceeeeeeccceeEEEeecccceecccccccccccchhh
Q psy18231 293 ALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQ 372 (540)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (540)
..+.... .+=.+.+-.++.+...|..|..+.|+... +..++
T Consensus 199 l~k~~~~-----------------------------------iVWSv~~Lrd~tI~sgDS~G~V~FWd~~~----gTLiq 239 (691)
T KOG2048|consen 199 LSKREPT-----------------------------------IVWSVLFLRDSTIASGDSAGTVTFWDSIF----GTLIQ 239 (691)
T ss_pred cccCCce-----------------------------------EEEEEEEeecCcEEEecCCceEEEEcccC----cchhh
Confidence 0000111 11122233455666666667666666443 33556
Q ss_pred hhhcccccEEEEEecC--CeeEeeeCCCeEEEEeCCCCce------EEeeeCCceEEEEEecCCcEEEeecCCCeEEEEe
Q psy18231 373 ALKEARDSITSVHVSD--HEILTASLDCRIRRYDIRTGNL------VTDYVGEPIVDACFTRDCQCILTCSTDECLRLFD 444 (540)
Q Consensus 373 ~~~~~~~~v~~l~~~~--~~l~~~~~dg~i~iwd~~~~~~------~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d 444 (540)
....|...|.+++..+ +++++++.|+.|..|...+.+. .+.++.+.+.+++..++ .+++|+.|..+.+-.
T Consensus 240 S~~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~--~l~sgG~d~~l~i~~ 317 (691)
T KOG2048|consen 240 SHSCHDADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIEN--ALISGGRDFTLAICS 317 (691)
T ss_pred hhhhhhcceeEEEEcCCCCeEEEccCCCceEEEEecCCccceeeeccccCCcccceeeeeecc--eEEecceeeEEEEcc
Confidence 7888999999999988 8999999999999998877643 23344578888888776 777888877776654
Q ss_pred c
Q psy18231 445 K 445 (540)
Q Consensus 445 ~ 445 (540)
.
T Consensus 318 s 318 (691)
T KOG2048|consen 318 S 318 (691)
T ss_pred c
Confidence 3
|
|
| >KOG1034|consensus | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.8e-25 Score=189.81 Aligned_cols=317 Identities=19% Similarity=0.266 Sum_probs=221.0
Q ss_pred ceeccccchhhhhhcccccceeeeecccccceeeeeecCeEEEEeCCC----CCEEEEeeCCCcEEEEcCCCCeeEEEee
Q psy18231 128 LLFSLPRTITRILYELPKEWSIRVYRPLTVNRELFVLSGLMHTRFPVD----GSYCLTCGSDKKIKLWNPYRNLLLKTYG 203 (540)
Q Consensus 128 ~~~s~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~v~~v~~spd----g~~lat~~~dg~i~iwd~~~~~~~~~~~ 203 (540)
.+|+..+.....+|....+.-+++....... .|......++|+-| ..+||.|+.-|.|+|.|+.+++....+.
T Consensus 56 ~vfatvG~~rvtiy~c~~d~~ir~lq~y~D~---d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~ 132 (385)
T KOG1034|consen 56 QVFATVGGNRVTIYECPGDGGIRLLQSYADE---DHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYR 132 (385)
T ss_pred ceEEEeCCcEEEEEEECCccceeeeeeccCC---CCCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhcccee
Confidence 3344444445555666666666665544322 46677778888764 3478999999999999999999999999
Q ss_pred cCCcceeEEEEeeCC-CeEEEeeCCCeEEEEEcCCCceeEec---cccCCceeEEEECCCCCEEEEecCCCcEEEEEecC
Q psy18231 204 GHAHEVNDATAACDS-SQIASGASDKSVILWEVTTGQPVRRW---REHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKS 279 (540)
Q Consensus 204 ~h~~~v~~l~~sp~~-~~l~s~s~dg~i~iwd~~~~~~~~~~---~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 279 (540)
+|...|+.+.++|+. ++++++|.|.+|++|++++..++..+ .+|.+.|.++.|+++|.+|+++|.|.+|++|++..
T Consensus 133 ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~ 212 (385)
T KOG1034|consen 133 GHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNV 212 (385)
T ss_pred ccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecCh
Confidence 999999999999954 68899999999999999999998875 57999999999999999999999999999999985
Q ss_pred CCCCCcchhhhhHhhhhcCCceeEEEEeecccccccccCceeeEEEeeeecccccceeeeeeccceeEEEeecccceecc
Q psy18231 280 RSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIG 359 (540)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (540)
.+..... +.. ..+.++.. . .
T Consensus 213 ~~f~~~l--------E~s---------~~~~~~~t--------------------------------~-----------~ 232 (385)
T KOG1034|consen 213 KEFKNKL--------ELS---------ITYSPNKT--------------------------------T-----------R 232 (385)
T ss_pred hHHhhhh--------hhh---------cccCCCCc--------------------------------c-----------C
Confidence 4311100 000 00000000 0 0
Q ss_pred cccccccccchhhhhhcccccEEEEEecCCeeEeeeCCCeEEEEeCCCCceEEeeeCCceEEEEEecCCcEEEeecCCCe
Q psy18231 360 DVTPISIHNSCFQALKEARDSITSVHVSDHEILTASLDCRIRRYDIRTGNLVTDYVGEPIVDACFTRDCQCILTCSTDEC 439 (540)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~ 439 (540)
.+...........+..-|...|-|+.|-.+++++-+.++.|..|... +.-..++. | . -|++.
T Consensus 233 pfpt~~~~fp~fst~diHrnyVDCvrw~gd~ilSkscenaI~~w~pg--kl~e~~~~--v---k-p~es~---------- 294 (385)
T KOG1034|consen 233 PFPTPKTHFPDFSTTDIHRNYVDCVRWFGDFILSKSCENAIVCWKPG--KLEESIHN--V---K-PPESA---------- 294 (385)
T ss_pred cCCccccccccccccccccchHHHHHHHhhheeecccCceEEEEecc--hhhhhhhc--c---C-CCccc----------
Confidence 00000000000113446788888888888888888888888888752 11111110 0 0 01100
Q ss_pred EEEEeccccchhhhhccCcCCcceEEEEecCCCCeEEEeeCCCcEEEEEecCCcc--eeEEEecccceeeeEEEEcCCCc
Q psy18231 440 LRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQ--ISTLIHSVGKAVVNSLCSHPTRK 517 (540)
Q Consensus 440 i~i~d~~~~~~~~~~~~~~~~v~~~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~--~~~~~~~~~~~~v~~l~~s~d~~ 517 (540)
-..+.++.-....++.+.++|.+-+++||.|...|.|++||++..++ ..++........|+..+||.||.
T Consensus 295 --------~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs 366 (385)
T KOG1034|consen 295 --------TTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGS 366 (385)
T ss_pred --------eeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecccCc
Confidence 01123344455668889899999999999999999999999987765 33444334567899999999999
Q ss_pred EEEeec-CCeeEEEEcc
Q psy18231 518 HIMSAC-GNNVKLWTAE 533 (540)
Q Consensus 518 ~l~s~~-d~~i~iw~~~ 533 (540)
+|+... |++|--||.-
T Consensus 367 ~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 367 ILVLVCDDGTVWRWDRV 383 (385)
T ss_pred EEEEEeCCCcEEEEEee
Confidence 999888 9999999853
|
|
| >KOG0321|consensus | Back alignment and domain information |
|---|
Probab=99.93 E-value=9e-25 Score=201.24 Aligned_cols=283 Identities=17% Similarity=0.269 Sum_probs=209.9
Q ss_pred eeccccchhhhhhcccccceeeeecccccce---------eeeeecCeEEEEeCCCCCEEEEeeCCCcEEEEcCCCCeeE
Q psy18231 129 LFSLPRTITRILYELPKEWSIRVYRPLTVNR---------ELFVLSGLMHTRFPVDGSYCLTCGSDKKIKLWNPYRNLLL 199 (540)
Q Consensus 129 ~~s~~~~~~~~~~~~~~~~~i~~~~~~~~~~---------~~~h~~~v~~v~~spdg~~lat~~~dg~i~iwd~~~~~~~ 199 (540)
.|+.......+++...+++.|.+++...... .+.|.++|..+.|-|-...|++++.|.++++||+++.++.
T Consensus 56 sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~ 135 (720)
T KOG0321|consen 56 SFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLV 135 (720)
T ss_pred cccCCCCccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeeccceee
Confidence 4455566677888888899999998766432 2459999999999996667889999999999999999887
Q ss_pred EE--eecCCcceeEEEEeeCC-CeEEEeeCCCeEEEEEcCCCc---------------------------eeEeccccCC
Q psy18231 200 KT--YGGHAHEVNDATAACDS-SQIASGASDKSVILWEVTTGQ---------------------------PVRRWREHAS 249 (540)
Q Consensus 200 ~~--~~~h~~~v~~l~~sp~~-~~l~s~s~dg~i~iwd~~~~~---------------------------~~~~~~~h~~ 249 (540)
.. +.||.+.|.+++|.|.. ..+++|+.||.|.|||++-.. .+..-+.|..
T Consensus 136 G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ 215 (720)
T KOG0321|consen 136 GGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASN 215 (720)
T ss_pred cceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccC
Confidence 76 88999999999999954 568899999999999986321 0111123445
Q ss_pred ceeE---EEECCCCCEEEEecC-CCcEEEEEecCCCCCCcchhhhhHhhhhcCCceeEEEEeecccccccccCceeeEEE
Q psy18231 250 KVTC---VKFNEDSSVVISGSQ-DNTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHLSNGLLTKLVF 325 (540)
Q Consensus 250 ~v~~---~~~~~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (540)
.|.+ +.+..|...||++|. |+.|+|||++.....-.+..
T Consensus 216 ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep------------------------------------- 258 (720)
T KOG0321|consen 216 TIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEP------------------------------------- 258 (720)
T ss_pred ceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCC-------------------------------------
Confidence 5555 556678889999988 99999999998762111100
Q ss_pred eeeecccccceeeeeeccceeEEEeecccceecccccccccccchhhhhhcc---cccEEEEEecC--CeeEeeeCCCeE
Q psy18231 326 AFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEA---RDSITSVHVSD--HEILTASLDCRI 400 (540)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~v~~l~~~~--~~l~~~~~dg~i 400 (540)
.....+..| .-.+.++..+. .+|++.+.|+.|
T Consensus 259 -------------------------------------------~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sI 295 (720)
T KOG0321|consen 259 -------------------------------------------RGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSI 295 (720)
T ss_pred -------------------------------------------CcccCccCcccceeeeEEEEecCCCCeEEEEecCCcE
Confidence 000011111 33456666655 777777779999
Q ss_pred EEEeCCCCc--eEEeeeCCce----EEEEEecCCcEEEeecCCCeEEEEeccccc-hhhhhccCcCCcceEEEEecCCCC
Q psy18231 401 RRYDIRTGN--LVTDYVGEPI----VDACFTRDCQCILTCSTDECLRLFDKATGE-LLEEYKGHKSGDFRIECCLDSKDS 473 (540)
Q Consensus 401 ~iwd~~~~~--~~~~~~~~~i----~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~v~~~~~~~s~~~~ 473 (540)
+.|++.+-. ++..+.+..+ ..-..+|++.++++|+.|...++|.+.+.+ ....+.+|...|+.++++.++...
T Consensus 296 y~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~~t~ 375 (720)
T KOG0321|consen 296 YFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPSATTP 375 (720)
T ss_pred EEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCChhhhhCcceEEEEEeeccccCCC
Confidence 999998643 3444444322 233578999999999999999999998764 567788999999999777776665
Q ss_pred eEEEeeCCCcEEEEEecCC
Q psy18231 474 QIFCGSSDGKIYKWQLVDS 492 (540)
Q Consensus 474 ~l~s~s~dg~i~iwd~~~~ 492 (540)
+++++.|..++||++..+
T Consensus 376 -v~TcSdD~~~kiW~l~~~ 393 (720)
T KOG0321|consen 376 -VATCSDDFRVKIWRLSNG 393 (720)
T ss_pred -ceeeccCcceEEEeccCc
Confidence 555599999999999654
|
|
| >KOG2096|consensus | Back alignment and domain information |
|---|
Probab=99.93 E-value=5e-24 Score=180.33 Aligned_cols=258 Identities=20% Similarity=0.311 Sum_probs=185.3
Q ss_pred EEeecCCcceeEEEEeeCCCeEEEeeCCCeEEEEEcCCCce--eEecc--ccCCceeEEEECCCCCEEEE-ecCCCcEEE
Q psy18231 200 KTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQP--VRRWR--EHASKVTCVKFNEDSSVVIS-GSQDNTVMM 274 (540)
Q Consensus 200 ~~~~~h~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~--~~~~~--~h~~~v~~~~~~~~~~~l~s-~~~dg~i~i 274 (540)
..+++|.+.|++++|+.||++|+|++.|++|++|++++-.. -+.++ -.-+..+.+.|.||-+-++. .-...++++
T Consensus 80 ~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~v 159 (420)
T KOG2096|consen 80 SVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLCV 159 (420)
T ss_pred hhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEEE
Confidence 35689999999999999999999999999999999976321 11111 11235688999998765544 444557999
Q ss_pred EEecCCCCCCcchhhhhHhhhhcCCceeEEEEeecccccccccCceeeEEEeeeecccccceeeeeeccceeEEEeeccc
Q psy18231 275 WDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLG 354 (540)
Q Consensus 275 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (540)
|.+...+........
T Consensus 160 yk~~K~~dG~~~~~~----------------------------------------------------------------- 174 (420)
T KOG2096|consen 160 YKLVKKTDGSGSHHF----------------------------------------------------------------- 174 (420)
T ss_pred EEeeecccCCCCccc-----------------------------------------------------------------
Confidence 987654410000000
Q ss_pred ceecccccccccccchhhhhhcccccEEEEEecC--CeeEeeeCCCeEEEEeCCCCceEEeeeC--CceEEEEEecCCcE
Q psy18231 355 STQIGDVTPISIHNSCFQALKEARDSITSVHVSD--HEILTASLDCRIRRYDIRTGNLVTDYVG--EPIVDACFTRDCQC 430 (540)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~--~~i~~~~~sp~~~~ 430 (540)
....-+.-.+.|+-.+..+-... .++.+++.|..|.+|+++ |+.+..+.. ..-+..+.||+|++
T Consensus 175 -----------v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aavSP~GRF 242 (420)
T KOG2096|consen 175 -----------VHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAVSPDGRF 242 (420)
T ss_pred -----------ccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-CceeeeeccccccccceeeCCCCcE
Confidence 00000112234555555555544 889999999999999999 888888764 45677899999999
Q ss_pred EEeecCCCeEEEEecc---cc-----chhhhhccCcCCcceEEEEecCCCCeEEEeeCCCcEEEEEec-------CCcce
Q psy18231 431 ILTCSTDECLRLFDKA---TG-----ELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLV-------DSSQI 495 (540)
Q Consensus 431 l~~~~~dg~i~i~d~~---~~-----~~~~~~~~~~~~v~~~~~~~s~~~~~l~s~s~dg~i~iwd~~-------~~~~~ 495 (540)
+++++..-.|++|..- .| ..+..+++|...|... +|+++...+++.|.||+++|||.. +.+.+
T Consensus 243 ia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~--aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~L 320 (420)
T KOG2096|consen 243 IAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAA--AFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDPKIL 320 (420)
T ss_pred EEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeee--eeCCCcceeEEEecCCcEEEeeccceEecCCCchHh
Confidence 9999999999999852 22 3456789999998777 999999999999999999999974 22333
Q ss_pred eEEEec--ccceeeeEEEEcCCCcEEEeecCCeeEEEEccccc
Q psy18231 496 STLIHS--VGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDY 536 (540)
Q Consensus 496 ~~~~~~--~~~~~v~~l~~s~d~~~l~s~~d~~i~iw~~~~~~ 536 (540)
++...+ ...+....++.+|+|+.|+.+....++++..+.+.
T Consensus 321 k~g~~pl~aag~~p~RL~lsP~g~~lA~s~gs~l~~~~se~g~ 363 (420)
T KOG2096|consen 321 KEGSAPLHAAGSEPVRLELSPSGDSLAVSFGSDLKVFASEDGK 363 (420)
T ss_pred hcCCcchhhcCCCceEEEeCCCCcEEEeecCCceEEEEcccCc
Confidence 333211 12233448999999999999888889999887753
|
|
| >KOG1274|consensus | Back alignment and domain information |
|---|
Probab=99.93 E-value=5.3e-24 Score=204.39 Aligned_cols=241 Identities=16% Similarity=0.224 Sum_probs=203.5
Q ss_pred cCCcceeEEEEeeCCCeEEEeeCCCeEEEEEcCCC-ceeEeccccCCceeEEEECCCCCEEEEecCCCcEEEEEecCCCC
Q psy18231 204 GHAHEVNDATAACDSSQIASGASDKSVILWEVTTG-QPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSH 282 (540)
Q Consensus 204 ~h~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~-~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~ 282 (540)
.|+...+.++|.|+|++|.+++.||.|++|+..+. +...++..+...|.+++.. +++|++++.+++|.+|.+..+..
T Consensus 11 aht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~--s~~f~~~s~~~tv~~y~fps~~~ 88 (933)
T KOG1274|consen 11 AHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACY--SNHFLTGSEQNTVLRYKFPSGEE 88 (933)
T ss_pred hccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEeec--ccceEEeeccceEEEeeCCCCCc
Confidence 58889999999999999999999999999998776 4445554478888888764 55999999999999999988763
Q ss_pred CCcchhhhhHhhhhcCCceeEEEEeecccccccccCceeeEEEeeeecccccceeeeeeccceeEEEeecccceeccccc
Q psy18231 283 HPIQVRCLNEALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVT 362 (540)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (540)
..+
T Consensus 89 ~~i----------------------------------------------------------------------------- 91 (933)
T KOG1274|consen 89 DTI----------------------------------------------------------------------------- 91 (933)
T ss_pred cce-----------------------------------------------------------------------------
Confidence 211
Q ss_pred ccccccchhhhhhcccccEEEEEecC--CeeEeeeCCCeEEEEeCCCCceEEeeeC--CceEEEEEecCCcEEEeecCCC
Q psy18231 363 PISIHNSCFQALKEARDSITSVHVSD--HEILTASLDCRIRRYDIRTGNLVTDYVG--EPIVDACFTRDCQCILTCSTDE 438 (540)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~v~~l~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~--~~i~~~~~sp~~~~l~~~~~dg 438 (540)
+....-++.+++++. .+++.|+.|-.|++.++........+.+ .+|.++.|+|++++||+.+.||
T Consensus 92 -----------L~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG 160 (933)
T KOG1274|consen 92 -----------LARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDG 160 (933)
T ss_pred -----------eeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCc
Confidence 122345677888877 7999999999999999998888888776 6899999999999999999999
Q ss_pred eEEEEeccccchhhhhccCcC------CcceEEEEecCCCCeEEEeeCCCcEEEEEecCCcceeEEEecccceeeeEEEE
Q psy18231 439 CLRLFDKATGELLEEYKGHKS------GDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCS 512 (540)
Q Consensus 439 ~i~i~d~~~~~~~~~~~~~~~------~v~~~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~ 512 (540)
.|++||+.++.+..++.+-.. .-.+...+|+|+|..++....|+.|++|+...++....+....+...+..++|
T Consensus 161 ~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~w 240 (933)
T KOG1274|consen 161 KVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQW 240 (933)
T ss_pred eEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceEEEEE
Confidence 999999999988777654211 11234459999999999999999999999999999999987667777999999
Q ss_pred cCCCcEEEeec-CCeeEEEEccc
Q psy18231 513 HPTRKHIMSAC-GNNVKLWTAEE 534 (540)
Q Consensus 513 s~d~~~l~s~~-d~~i~iw~~~~ 534 (540)
||.|+|||+++ ||.|.|||+++
T Consensus 241 sPnG~YiAAs~~~g~I~vWnv~t 263 (933)
T KOG1274|consen 241 SPNGKYIAASTLDGQILVWNVDT 263 (933)
T ss_pred cCCCcEEeeeccCCcEEEEeccc
Confidence 99999999999 99999999984
|
|
| >KOG0267|consensus | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.9e-26 Score=215.15 Aligned_cols=246 Identities=17% Similarity=0.329 Sum_probs=219.1
Q ss_pred cccceeeeecccccceeeeeecCeEEEEeCCCCCEEEEeeCCCcEEEEcCCCCeeEEEeecCCcceeEEEEeeCCCeEEE
Q psy18231 144 PKEWSIRVYRPLTVNRELFVLSGLMHTRFPVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIAS 223 (540)
Q Consensus 144 ~~~~~i~~~~~~~~~~~~~h~~~v~~v~~spdg~~lat~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s 223 (540)
.....+++|+... ...|...|.++..-..++.+++|+.|..+-+|.+.....+..|.+|..+|.++.|+++..+|++
T Consensus 11 ~~~t~Lr~~~~~~---~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~~E~Llaa 87 (825)
T KOG0267|consen 11 KRATKLRVWDTRE---FVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFDTSERLLAA 87 (825)
T ss_pred eeeeccccccchh---hhhhhhhhceeeeeccceeeccCCCceeeccccccCCchhheeeccCCcceeeecCcchhhhcc
Confidence 3445567777554 3368889999998778899999999999999999888888889999999999999999999999
Q ss_pred eeCCCeEEEEEcCCCceeEeccccCCceeEEEECCCCCEEEEecCCCcEEEEEecCCCCCCcchhhhhHhhhhcCCceeE
Q psy18231 224 GASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQVRCLNEALKEARDSITS 303 (540)
Q Consensus 224 ~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (540)
|+.+|+|++||++..+.++++.+|...+..+.|+|-+.+.++|+.|+.+++||++...
T Consensus 88 gsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~G---------------------- 145 (825)
T KOG0267|consen 88 GSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKG---------------------- 145 (825)
T ss_pred cccCCceeeeehhhhhhhhhhhccccCcceeeeccceEEeccccccccceehhhhccC----------------------
Confidence 9999999999999999999999999999999999999999999999999999998544
Q ss_pred EEEeecccccccccCceeeEEEeeeecccccceeeeeeccceeEEEeecccceecccccccccccchhhhhhcccccEEE
Q psy18231 304 VHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEARDSITS 383 (540)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 383 (540)
|.....+|...+..
T Consensus 146 ------------------------------------------------------------------c~~~~~s~~~vv~~ 159 (825)
T KOG0267|consen 146 ------------------------------------------------------------------CSHTYKSHTRVVDV 159 (825)
T ss_pred ------------------------------------------------------------------ceeeecCCcceeEE
Confidence 23356678899999
Q ss_pred EEecC--CeeEeeeCCCeEEEEeCCCCceEEeeeC--CceEEEEEecCCcEEEeecCCCeEEEEeccccchhhhhccCcC
Q psy18231 384 VHVSD--HEILTASLDCRIRRYDIRTGNLVTDYVG--EPIVDACFTRDCQCILTCSTDECLRLFDKATGELLEEYKGHKS 459 (540)
Q Consensus 384 l~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~--~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~ 459 (540)
+.|+| .+++.++.|..+++||...|+.+.+|.. ..+.++.|+|..-+++.|+.|+++++||+++.+.+...+....
T Consensus 160 l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~~~~~~ 239 (825)
T KOG0267|consen 160 LRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISSGKPETD 239 (825)
T ss_pred EeecCCCceeeccCCcceeeeecccccccccccccccccccccccCchhhhhccCCCCceeeeeccceeEEeeccCCccC
Confidence 99999 6899999999999999999999999985 5788999999999999999999999999999999988888877
Q ss_pred CcceEEEEecCCCCeEEEeeCCC
Q psy18231 460 GDFRIECCLDSKDSQIFCGSSDG 482 (540)
Q Consensus 460 ~v~~~~~~~s~~~~~l~s~s~dg 482 (540)
.|.+. .|+|++..+++|..+.
T Consensus 240 ~v~~~--~fn~~~~~~~~G~q~s 260 (825)
T KOG0267|consen 240 GVRSL--AFNPDGKIVLSGEQIS 260 (825)
T ss_pred Cceee--eecCCceeeecCchhh
Confidence 88777 8999999999887654
|
|
| >KOG1445|consensus | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.2e-24 Score=197.44 Aligned_cols=155 Identities=16% Similarity=0.198 Sum_probs=126.0
Q ss_pred ccccEEEEEecC---CeeEeeeCCCeEEEEeCCCC---------ceEEeeeCCceEEEEEec-CCcEEEeecCCCeEEEE
Q psy18231 377 ARDSITSVHVSD---HEILTASLDCRIRRYDIRTG---------NLVTDYVGEPIVDACFTR-DCQCILTCSTDECLRLF 443 (540)
Q Consensus 377 ~~~~v~~l~~~~---~~l~~~~~dg~i~iwd~~~~---------~~~~~~~~~~i~~~~~sp-~~~~l~~~~~dg~i~i~ 443 (540)
....|+.+.|+| ..|++++.||.|++|.+..+ +.+.+.++..|+++.|+| ....|++++.|-+|++|
T Consensus 626 Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lW 705 (1012)
T KOG1445|consen 626 NGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELW 705 (1012)
T ss_pred cCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeee
Confidence 345789999998 89999999999999988754 234455668999999999 56789999999999999
Q ss_pred eccccchhhhhccCcCCcceEEEEecCCCCeEEEeeCCCcEEEEEecCCcce-eEEEecccceeeeEEEEcCCCcEEEee
Q psy18231 444 DKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQI-STLIHSVGKAVVNSLCSHPTRKHIMSA 522 (540)
Q Consensus 444 d~~~~~~~~~~~~~~~~v~~~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~-~~~~~~~~~~~v~~l~~s~d~~~l~s~ 522 (540)
|+.+++....+.+|+..|..+ +|||||+.+|+.+.||+|++|+-++++.. ..-+. .-...-..+.|.-||++++..
T Consensus 706 Dl~~~~~~~~l~gHtdqIf~~--AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~g-pvgtRgARi~wacdgr~viv~ 782 (1012)
T KOG1445|consen 706 DLANAKLYSRLVGHTDQIFGI--AWSPDGRRIATVCKDGTLRVYEPRSREQPVYEGKG-PVGTRGARILWACDGRIVIVV 782 (1012)
T ss_pred ehhhhhhhheeccCcCceeEE--EECCCCcceeeeecCceEEEeCCCCCCCccccCCC-CccCcceeEEEEecCcEEEEe
Confidence 999999999999999999888 99999999999999999999998776543 22221 111233456788899999888
Q ss_pred c-CC----eeEEEEccc
Q psy18231 523 C-GN----NVKLWTAEE 534 (540)
Q Consensus 523 ~-d~----~i~iw~~~~ 534 (540)
+ |. .|.+|+.+.
T Consensus 783 Gfdk~SeRQv~~Y~Aq~ 799 (1012)
T KOG1445|consen 783 GFDKSSERQVQMYDAQT 799 (1012)
T ss_pred cccccchhhhhhhhhhh
Confidence 7 64 678887654
|
|
| >KOG0646|consensus | Back alignment and domain information |
|---|
Probab=99.93 E-value=1e-23 Score=187.52 Aligned_cols=260 Identities=20% Similarity=0.298 Sum_probs=203.7
Q ss_pred EeeCC-CcEEEEcCCCCeeEEEeecC-CcceeEEEEeeCCCeEEEeeC-CCeEEEEEcCCCceeEeccccCCceeEEEEC
Q psy18231 181 TCGSD-KKIKLWNPYRNLLLKTYGGH-AHEVNDATAACDSSQIASGAS-DKSVILWEVTTGQPVRRWREHASKVTCVKFN 257 (540)
Q Consensus 181 t~~~d-g~i~iwd~~~~~~~~~~~~h-~~~v~~l~~sp~~~~l~s~s~-dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~ 257 (540)
+++.| .++.+||+.+|....++++. ...-.++..- .+.+++++.. -..+.+|.+..........--.++|.+++-+
T Consensus 12 ssS~d~~~~~~~dl~TGt~~~~ykg~~~a~~~sl~~l-~~~yllsaq~~rp~l~vw~i~k~~~~~q~~v~Pg~v~al~s~ 90 (476)
T KOG0646|consen 12 SSSFDPINCIVWDLRTGTSLLQYKGSYLAQAASLTAL-NNEYLLSAQLKRPLLHVWEILKKDQVVQYIVLPGPVHALASS 90 (476)
T ss_pred ccCCCCcceeEEecCCCceeEEecCcccccchhhhhh-chhheeeecccCccccccccCchhhhhhhcccccceeeeecC
Confidence 34444 45999999999999998764 2222222222 3456666654 4579999987665544333346789999999
Q ss_pred CCCCEEEEecCCCcEEEEEecCCCCCCcchhhhhHhhhhcCCceeEEEEeecccccccccCceeeEEEeeeeccccccee
Q psy18231 258 EDSSVVISGSQDNTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLS 337 (540)
Q Consensus 258 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (540)
|+|.+|+.|+..|.|++|.+.++.
T Consensus 91 n~G~~l~ag~i~g~lYlWelssG~-------------------------------------------------------- 114 (476)
T KOG0646|consen 91 NLGYFLLAGTISGNLYLWELSSGI-------------------------------------------------------- 114 (476)
T ss_pred CCceEEEeecccCcEEEEEecccc--------------------------------------------------------
Confidence 999999999899999999999987
Q ss_pred eeeeccceeEEEeecccceecccccccccccchhhhhhcccccEEEEEecC--CeeEeeeCCCeEEEEeCC---------
Q psy18231 338 GVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEARDSITSVHVSD--HEILTASLDCRIRRYDIR--------- 406 (540)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~--~~l~~~~~dg~i~iwd~~--------- 406 (540)
.+..+..|...|+++.|+. ..+++|+.||.|.+|++-
T Consensus 115 --------------------------------LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~ 162 (476)
T KOG0646|consen 115 --------------------------------LLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDH 162 (476)
T ss_pred --------------------------------HHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCC
Confidence 2346789999999999988 899999999999999764
Q ss_pred CCceEEeeeCC--ceEEEEEecC--CcEEEeecCCCeEEEEeccccchhhhhccCcCCcceEEEEecCCCCeEEEeeCCC
Q psy18231 407 TGNLVTDYVGE--PIVDACFTRD--CQCILTCSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDG 482 (540)
Q Consensus 407 ~~~~~~~~~~~--~i~~~~~sp~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~s~~~~~l~s~s~dg 482 (540)
+-+++..+.+| +|+.+...+. ..+|++++.|.++++||+..+..+.++... ..+.++ +.+|-++.++.|+.+|
T Consensus 163 ~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~fp-~si~av--~lDpae~~~yiGt~~G 239 (476)
T KOG0646|consen 163 SVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITFP-SSIKAV--ALDPAERVVYIGTEEG 239 (476)
T ss_pred CccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEecC-CcceeE--EEcccccEEEecCCcc
Confidence 23455666654 6888887764 468999999999999999999888776533 345555 8899999999999999
Q ss_pred cEEEEEecCCc----------------ceeEEEecccce--eeeEEEEcCCCcEEEeec-CCeeEEEEccc
Q psy18231 483 KIYKWQLVDSS----------------QISTLIHSVGKA--VVNSLCSHPTRKHIMSAC-GNNVKLWTAEE 534 (540)
Q Consensus 483 ~i~iwd~~~~~----------------~~~~~~~~~~~~--~v~~l~~s~d~~~l~s~~-d~~i~iw~~~~ 534 (540)
.|.+.++.... .+..+. +|.+ .|+|++.+-||.+|++|+ ||.|.|||+.+
T Consensus 240 ~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~--Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S 308 (476)
T KOG0646|consen 240 KIFQNLLFKLSGQSAGVNQKGRHEENTQINVLV--GHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYS 308 (476)
T ss_pred eEEeeehhcCCcccccccccccccccceeeeec--cccCCcceeEEEEecCccEEEeeCCCCCEEEEecch
Confidence 99998875432 344555 7877 999999999999999999 99999999864
|
|
| >KOG2445|consensus | Back alignment and domain information |
|---|
Probab=99.93 E-value=2e-23 Score=175.97 Aligned_cols=247 Identities=20% Similarity=0.282 Sum_probs=187.1
Q ss_pred ecCCcceeEEEEeeCCCeEEEeeCCCeEEEEEcCCC----ceeEeccccCCceeEEEECC--CCCEEEEecCCCcEEEEE
Q psy18231 203 GGHAHEVNDATAACDSSQIASGASDKSVILWEVTTG----QPVRRWREHASKVTCVKFNE--DSSVVISGSQDNTVMMWD 276 (540)
Q Consensus 203 ~~h~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~----~~~~~~~~h~~~v~~~~~~~--~~~~l~s~~~dg~i~iwd 276 (540)
.+|.+-|.++.|.+.|+++|+|+.|++|+|||.++. .+....+.|.+.|..+.|.+ -|+.+|+++.|+++.||.
T Consensus 10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWE 89 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWE 89 (361)
T ss_pred cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeee
Confidence 468899999999999999999999999999997554 34556778999999999966 689999999999999997
Q ss_pred ecCCCCCCcchhhhhHhhhhcCCceeEEEEeecccccccccCceeeEEEeeeecccccceeeeeeccceeEEEeecccce
Q psy18231 277 VKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGST 356 (540)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (540)
-...+.... .
T Consensus 90 E~~~~~~~~----------------------------------------------------------------------~ 99 (361)
T KOG2445|consen 90 EQEKSEEAH----------------------------------------------------------------------G 99 (361)
T ss_pred ecccccccc----------------------------------------------------------------------c
Confidence 532211000 0
Q ss_pred ecccccccccccchhhhhhcccccEEEEEecC----CeeEeeeCCCeEEEEeCCCCc------eEEeee---------CC
Q psy18231 357 QIGDVTPISIHNSCFQALKEARDSITSVHVSD----HEILTASLDCRIRRYDIRTGN------LVTDYV---------GE 417 (540)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~----~~l~~~~~dg~i~iwd~~~~~------~~~~~~---------~~ 417 (540)
..| ....++......|+++.|.| -.+++++.||.+|||+.-..- +..++. ..
T Consensus 100 ~~W---------v~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~ 170 (361)
T KOG2445|consen 100 RRW---------VRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQ 170 (361)
T ss_pred cee---------EEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccccC
Confidence 000 01114556678999999999 458899999999999865432 222222 13
Q ss_pred ceEEEEEecC---CcEEEeecCC-----CeEEEEecccc----chhhhhccCcCCcceEEEEecCCC----CeEEEeeCC
Q psy18231 418 PIVDACFTRD---CQCILTCSTD-----ECLRLFDKATG----ELLEEYKGHKSGDFRIECCLDSKD----SQIFCGSSD 481 (540)
Q Consensus 418 ~i~~~~~sp~---~~~l~~~~~d-----g~i~i~d~~~~----~~~~~~~~~~~~v~~~~~~~s~~~----~~l~s~s~d 481 (540)
+..|+.|+|. ..+||+|+.+ +.++||..... ..+.++.+|..+|+.+ +|.|+- ..||+++.|
T Consensus 171 ~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di--~wAPn~Gr~y~~lAvA~kD 248 (361)
T KOG2445|consen 171 PCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDI--SWAPNIGRSYHLLAVATKD 248 (361)
T ss_pred cceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceee--eeccccCCceeeEEEeecC
Confidence 6788899873 4678888776 57888875443 4577888999999999 566652 359999999
Q ss_pred CcEEEEEecCC--------------------cceeEEEecccceeeeEEEEcCCCcEEEeec-CCeeEEEEcc
Q psy18231 482 GKIYKWQLVDS--------------------SQISTLIHSVGKAVVNSLCSHPTRKHIMSAC-GNNVKLWTAE 533 (540)
Q Consensus 482 g~i~iwd~~~~--------------------~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~-d~~i~iw~~~ 533 (540)
| |+||.+... +.+..+ ..|++.|..+.|.-.|..|++++ ||.||+|...
T Consensus 249 g-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~--~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkan 318 (361)
T KOG2445|consen 249 G-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSEL--DDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKAN 318 (361)
T ss_pred c-EEEEEEeeccchhhhhcccCCCCccccceEEeeec--cCCCCceEEEEEeeeeeEEeecCCCceeeehhhh
Confidence 9 999998731 112233 38999999999999999999999 9999999753
|
|
| >KOG4283|consensus | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.4e-23 Score=173.40 Aligned_cols=275 Identities=18% Similarity=0.264 Sum_probs=206.7
Q ss_pred hhhhhcccccceeeeecccccc------------------eeeeeecCeEEEEeCC-CCCEEEEeeCCCcEEEEcCCCCe
Q psy18231 137 TRILYELPKEWSIRVYRPLTVN------------------RELFVLSGLMHTRFPV-DGSYCLTCGSDKKIKLWNPYRNL 197 (540)
Q Consensus 137 ~~~~~~~~~~~~i~~~~~~~~~------------------~~~~h~~~v~~v~~sp-dg~~lat~~~dg~i~iwd~~~~~ 197 (540)
.+++.+++.++.|.+|+..... .+-+|.-+|.++.|-| |.-.+.+++.|.+++|||..+.+
T Consensus 56 grymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFtssSFDhtlKVWDtnTlQ 135 (397)
T KOG4283|consen 56 GRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTSSSFDHTLKVWDTNTLQ 135 (397)
T ss_pred ceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeecccccceEEEeecccce
Confidence 3444455556666666554321 2345888999999999 66678899999999999999999
Q ss_pred eEEEeecCCcceeEEEEee---CCCeEEEeeCCCeEEEEEcCCCceeEeccccCCceeEEEECCCCC-EEEEecCCCcEE
Q psy18231 198 LLKTYGGHAHEVNDATAAC---DSSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSS-VVISGSQDNTVM 273 (540)
Q Consensus 198 ~~~~~~~h~~~v~~l~~sp---~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~s~~~dg~i~ 273 (540)
....|+ ..+.|++-++|| ...++|+|..|-.|++-|+.+|..-+++.+|.+.|.++.|+|... .|++|+.||.|+
T Consensus 136 ~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~ir 214 (397)
T KOG4283|consen 136 EAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIR 214 (397)
T ss_pred eeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEeccCceeEEEecCCCceEE
Confidence 888887 578899999998 345788888999999999999999999999999999999999655 678999999999
Q ss_pred EEEecCCCCCCcchhhhhHhhhhcCCceeEEEEeecccccccccCceeeEEEeeeecccccceeeeeeccceeEEEeecc
Q psy18231 274 MWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFL 353 (540)
Q Consensus 274 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (540)
+||++...- .+...+..
T Consensus 215 lWDiRrasg---------------------------------------------------------------cf~~lD~h 231 (397)
T KOG4283|consen 215 LWDIRRASG---------------------------------------------------------------CFRVLDQH 231 (397)
T ss_pred EEEeecccc---------------------------------------------------------------eeEEeecc
Confidence 999986531 01111111
Q ss_pred cceecccccccccccchhhhhhcccccEEEEEecC--CeeEeeeCCCeEEEEeCCCCceEEeeeC--------C-ceEEE
Q psy18231 354 GSTQIGDVTPISIHNSCFQALKEARDSITSVHVSD--HEILTASLDCRIRRYDIRTGNLVTDYVG--------E-PIVDA 422 (540)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~--------~-~i~~~ 422 (540)
.. ...+.++.-..|.+.+..++|.. .++++.+.|..+++|+..+|+....-.+ + .+. +
T Consensus 232 n~----------k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G~ntl~~~g~~~~n~~~~~~~~-~ 300 (397)
T KOG4283|consen 232 NT----------KRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESGRNTLREFGPIIHNQTTSFAVH-I 300 (397)
T ss_pred cC----------ccCccccccccccceeeeeeecccchhhhhccCccceEEeecccCcccccccccccccccccceEE-E
Confidence 00 00112234567999999999987 8899999999999999998864322211 1 122 2
Q ss_pred EEecCCcEEEeecCCCeEEEEeccccchhhhhccCcCCcceEEEEecCCCCeEEEeeCCCcEEEEEe
Q psy18231 423 CFTRDCQCILTCSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQL 489 (540)
Q Consensus 423 ~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~s~~~~~l~s~s~dg~i~iwd~ 489 (540)
. +-+...++.--.++.+.++++-++..++.+..|-..+.+. ++-|+=+...+|+.|+.|..|-.
T Consensus 301 ~-~~~s~vfv~~p~~~~lall~~~sgs~ir~l~~h~k~i~c~--~~~~~fq~~~tg~~d~ni~~w~p 364 (397)
T KOG4283|consen 301 Q-SMDSDVFVLFPNDGSLALLNLLEGSFVRRLSTHLKRINCA--AYRPDFEQCFTGDMNGNIYMWSP 364 (397)
T ss_pred e-ecccceEEEEecCCeEEEEEccCceEEEeeecccceeeEE--eecCchhhhhccccCCccccccc
Confidence 2 3334444444456899999999999999999996655554 78888888999999999999986
|
|
| >TIGR00742 yjbN tRNA dihydrouridine synthase A | Back alignment and domain information |
|---|
Probab=99.92 E-value=7.9e-26 Score=204.91 Aligned_cols=106 Identities=23% Similarity=0.440 Sum_probs=98.8
Q ss_pred CceEEeccCCCCCHHHHHHHHHcCC-CEEEeeeeecccccccchhhccccccCCCCCCEEEEEecCChhHHHHHHHHhcC
Q psy18231 16 NLKHCDSTLWTSKLNFRQLVRSHNV-DLCFTPMIIADSFIKSSKARNNEFSTSPEDTPLVVQFASNNHDDFVRATQYVAP 94 (540)
Q Consensus 16 ~~~~~ap~~~~~~~~~r~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~ 94 (540)
.+++||||+|+||+|||++||++|+ +++||||++++.++++... ..+.+.++|.|+++|++|++|+.++++++.+.+
T Consensus 1 ~~~~lAPM~g~Td~~fR~l~~~~g~~~~~~TEMv~a~~l~~~~~~--~~l~~~~~e~p~~vQl~g~~p~~~~~aA~~~~~ 78 (318)
T TIGR00742 1 GRFSVAPMLDWTDRHFRYFLRLLSKHTLLYTEMITAKAIIHGDKK--DILKFSPEESPVALQLGGSDPNDLAKCAKIAEK 78 (318)
T ss_pred CCEEEECCCCCcCHHHHHHHHHhCCCCEEEeCCEEEhhhhccCHH--HHcccCCCCCcEEEEEccCCHHHHHHHHHHHHh
Confidence 3789999999999999999999998 9999999999999987666 477788999999999999999999999999876
Q ss_pred -CCCeEeeccCCCceEEEeccccceecccc
Q psy18231 95 -HCNGVDLNCGCPQRWAIKEGYGCALLSKQ 123 (540)
Q Consensus 95 -~~~~id~~~gc~~~~~~~~g~g~~l~~~~ 123 (540)
+++.||+|+|||..++.++|.|++||+++
T Consensus 79 ~g~d~IDlN~GCP~~~v~~~g~Gs~Ll~~p 108 (318)
T TIGR00742 79 RGYDEINLNVGCPSDRVQNGNFGACLMGNA 108 (318)
T ss_pred CCCCEEEEECCCCHHHhCCCCeehHhhcCH
Confidence 78999999999999999999999999985
|
Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. |
| >PF01207 Dus: Dihydrouridine synthase (Dus); InterPro: IPR001269 Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA | Back alignment and domain information |
|---|
Probab=99.92 E-value=6e-26 Score=206.73 Aligned_cols=105 Identities=34% Similarity=0.545 Sum_probs=84.7
Q ss_pred EEeccCCCCCHHHHHHHHHcCCC-EEEeeeeecccccccchhhccccccCCCCCCEEEEEecCChhHHHHHHHHhcC-CC
Q psy18231 19 HCDSTLWTSKLNFRQLVRSHNVD-LCFTPMIIADSFIKSSKARNNEFSTSPEDTPLVVQFASNNHDDFVRATQYVAP-HC 96 (540)
Q Consensus 19 ~~ap~~~~~~~~~r~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~-~~ 96 (540)
+||||+|+||+|||++||++|++ ++|||||+++++++..+.....+...+++.|+++|++|++|+.+++|++++.+ ++
T Consensus 1 ~LAPM~g~td~~fR~l~~~~g~~~~~~temi~a~~~~~~~~~~~~~~~~~~~~~p~~~Ql~g~~~~~~~~aa~~~~~~~~ 80 (309)
T PF01207_consen 1 ILAPMAGVTDLPFRRLCREFGADDLTYTEMISAKAILRSNKKTIRLLPFLPNERPLIVQLFGNDPEDLAEAAEIVAELGF 80 (309)
T ss_dssp -E---TTTSSHHHHHHHHCCTSSSBEE-S-EEHHHHHCT-HHHHHHS-GCC-T-TEEEEEE-S-HHHHHHHHHHHCCTT-
T ss_pred CccCCCCCchHHHHHHHHHHCCCeEEEcCCEEECcccccccceeecccccccccceeEEEeeccHHHHHHHHHhhhccCC
Confidence 59999999999999999999998 99999999999999999999999999999999999999999999999999999 99
Q ss_pred CeEeeccCCCceEEEeccccceecccc
Q psy18231 97 NGVDLNCGCPQRWAIKEGYGCALLSKQ 123 (540)
Q Consensus 97 ~~id~~~gc~~~~~~~~g~g~~l~~~~ 123 (540)
++||+|+|||.+.+.+.|.|++||+++
T Consensus 81 ~~IDlN~GCP~~~v~~~g~Ga~Ll~~p 107 (309)
T PF01207_consen 81 DGIDLNMGCPAPKVTKGGAGAALLKDP 107 (309)
T ss_dssp SEEEEEE---SHHHHHCT-GGGGGC-H
T ss_pred cEEeccCCCCHHHHhcCCcChhhhcCh
Confidence 999999999999999999999999985
|
Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 (P53759 from SWISSPROT) from Saccharomyces cerevisiae (Baker's yeast) acts on pre-tRNA-Phe, while Dus 2 (P53720 from SWISSPROT) acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD []. Some family members may be targeted to the mitochondria and even have a role in mitochondria []. ; GO: 0017150 tRNA dihydrouridine synthase activity, 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing, 0055114 oxidation-reduction process; PDB: 1VHN_A 3B0P_A 3B0V_D 3B0U_Y. |
| >KOG1009|consensus | Back alignment and domain information |
|---|
Probab=99.92 E-value=5.9e-23 Score=179.58 Aligned_cols=280 Identities=17% Similarity=0.247 Sum_probs=205.2
Q ss_pred cCeEEEEeCCCCC-EEEEeeCCCcEEEEcCCCC---------eeEEEeecCCcceeEEEEeeCCCeEEEeeCCCeEEEEE
Q psy18231 165 SGLMHTRFPVDGS-YCLTCGSDKKIKLWNPYRN---------LLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWE 234 (540)
Q Consensus 165 ~~v~~v~~spdg~-~lat~~~dg~i~iwd~~~~---------~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~dg~i~iwd 234 (540)
.+|.++.|.++.. .||||+.|..|+||.+..+ +.+..+..|...|+++.|+|+|..||+|+.+|.|.+|-
T Consensus 14 ~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk 93 (434)
T KOG1009|consen 14 EPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWK 93 (434)
T ss_pred CceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEE
Confidence 5789999999776 9999999999999986543 23456788999999999999999999999999999998
Q ss_pred cC--------C--------CceeEeccccCCceeEEEECCCCCEEEEecCCCcEEEEEecCCCCCCcchhhhhHhhhhcC
Q psy18231 235 VT--------T--------GQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQVRCLNEALKEAR 298 (540)
Q Consensus 235 ~~--------~--------~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 298 (540)
.. + ......+.+|...|..++|+|++.++++++-|..+++||+..+..
T Consensus 94 ~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l---------------- 157 (434)
T KOG1009|consen 94 QGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQL---------------- 157 (434)
T ss_pred ecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEecccee----------------
Confidence 65 2 123345678999999999999999999999999999999998872
Q ss_pred CceeEEEEeecccccccccCceeeEEEeeeecccccceeeeeeccceeEEEeecccceecccccccccccchhhhhhccc
Q psy18231 299 DSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEAR 378 (540)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (540)
...+.+|.
T Consensus 158 ------------------------------------------------------------------------~~~~~dh~ 165 (434)
T KOG1009|consen 158 ------------------------------------------------------------------------LAILDDHE 165 (434)
T ss_pred ------------------------------------------------------------------------Eeeccccc
Confidence 12456778
Q ss_pred ccEEEEEecC--CeeEeeeCCCeEEEEeCCCCceEEee---------------------eC----CceEEEEEecCCcEE
Q psy18231 379 DSITSVHVSD--HEILTASLDCRIRRYDIRTGNLVTDY---------------------VG----EPIVDACFTRDCQCI 431 (540)
Q Consensus 379 ~~v~~l~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~---------------------~~----~~i~~~~~sp~~~~l 431 (540)
..+..++|.| +++++-+.|...+.+++...+.++.. +. .-...++|+|+|.+|
T Consensus 166 ~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~ll 245 (434)
T KOG1009|consen 166 HYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLL 245 (434)
T ss_pred cccceeecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCcEE
Confidence 8888888888 77888788876666666543332211 11 135678899999999
Q ss_pred EeecC----C-----CeEEEEecccc-chhhhhccCcCCcceEEEE---------------ec-CCCCeEEEeeCCCcEE
Q psy18231 432 LTCST----D-----ECLRLFDKATG-ELLEEYKGHKSGDFRIECC---------------LD-SKDSQIFCGSSDGKIY 485 (540)
Q Consensus 432 ~~~~~----d-----g~i~i~d~~~~-~~~~~~~~~~~~v~~~~~~---------------~s-~~~~~l~s~s~dg~i~ 485 (540)
++.+. . +..++|+-... ++...+.....+...++++ |+ |-+-.+|.++ .+.|+
T Consensus 246 vtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt-~~svy 324 (434)
T KOG1009|consen 246 VTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIAT-KNSVY 324 (434)
T ss_pred EcccceeeeCCceeeceeEeeccccccCceeecCCCCcceEEEEeeeeEEEeccccccccccccccceEEEEee-cceEE
Confidence 98653 2 23355543321 2233333333332222211 11 2222345555 46799
Q ss_pred EEEecCCcceeEEEecccceeeeEEEEcCCCcEEEeec-CCeeEEEEccc
Q psy18231 486 KWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC-GNNVKLWTAEE 534 (540)
Q Consensus 486 iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~-d~~i~iw~~~~ 534 (540)
|||.++.+++..... -|-..++.++|++||..|+.++ ||...+-.++.
T Consensus 325 vydtq~~~P~~~v~n-ihy~~iTDiaws~dg~~l~vSS~DGyCS~vtfe~ 373 (434)
T KOG1009|consen 325 VYDTQTLEPLAVVDN-IHYSAITDIAWSDDGSVLLVSSTDGFCSLVTFEP 373 (434)
T ss_pred EeccccccceEEEee-eeeeeecceeecCCCcEEEEeccCCceEEEEEcc
Confidence 999999888888765 6899999999999999999999 99777665543
|
|
| >KOG0307|consensus | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.1e-24 Score=210.30 Aligned_cols=278 Identities=14% Similarity=0.252 Sum_probs=216.3
Q ss_pred EEEEeCCCCC-EEEEe----------eCCCcEEEEcCCC--C----eeEEEeecCCcceeEEEEeeCCCe----EEEeeC
Q psy18231 168 MHTRFPVDGS-YCLTC----------GSDKKIKLWNPYR--N----LLLKTYGGHAHEVNDATAACDSSQ----IASGAS 226 (540)
Q Consensus 168 ~~v~~spdg~-~lat~----------~~dg~i~iwd~~~--~----~~~~~~~~h~~~v~~l~~sp~~~~----l~s~s~ 226 (540)
..++|+|++. ++|+| +.+.++.||.+.. . +....+. -....+.++|.+.+.. ||.|..
T Consensus 10 a~~awSp~~~~~laagt~aq~~D~sfst~~slEifeld~~~~~~dlk~~~s~~-s~~rF~kL~W~~~g~~~~GlIaGG~e 88 (1049)
T KOG0307|consen 10 ATFAWSPASPPLLAAGTAAQQFDASFSTSASLEIFELDFSDESSDLKPVGSLQ-SSNRFNKLAWGSYGSHSHGLIAGGLE 88 (1049)
T ss_pred ceEEecCCCchhhHHHhhhhccccccccccccceeeecccCcccccccccccc-ccccceeeeecccCCCccceeecccc
Confidence 4578999886 55554 3355666665432 2 2333333 3567889999997766 889999
Q ss_pred CCeEEEEEcCC---C---ceeEeccccCCceeEEEECCC-CCEEEEecCCCcEEEEEecCCCCCCcchhhhhHhhhhcCC
Q psy18231 227 DKSVILWEVTT---G---QPVRRWREHASKVTCVKFNED-SSVVISGSQDNTVMMWDVKSRSHHPIQVRCLNEALKEARD 299 (540)
Q Consensus 227 dg~i~iwd~~~---~---~~~~~~~~h~~~v~~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 299 (540)
||.|.+||... + ..+.+...|.+.|..+.|++. +++|++|+.||.|.|||+...+. +...
T Consensus 89 dG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~t-P~~~------------ 155 (1049)
T KOG0307|consen 89 DGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPET-PFTP------------ 155 (1049)
T ss_pred CCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCC-CCCC------------
Confidence 99999999865 2 234566789999999999995 45999999999999999987542 1100
Q ss_pred ceeEEEEeecccccccccCceeeEEEeeeecccccceeeeeeccceeEEEeecccceecccccccccccchhhhhhcccc
Q psy18231 300 SITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEARD 379 (540)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (540)
.-....+
T Consensus 156 -------------------------------------------------------------------------~~~~~~~ 162 (1049)
T KOG0307|consen 156 -------------------------------------------------------------------------GSQAPPS 162 (1049)
T ss_pred -------------------------------------------------------------------------CCCCCcc
Confidence 0112357
Q ss_pred cEEEEEecC---CeeEeeeCCCeEEEEeCCCCceEEeeeC----CceEEEEEecCC-cEEEeecCC---CeEEEEecccc
Q psy18231 380 SITSVHVSD---HEILTASLDCRIRRYDIRTGNLVTDYVG----EPIVDACFTRDC-QCILTCSTD---ECLRLFDKATG 448 (540)
Q Consensus 380 ~v~~l~~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~~----~~i~~~~~sp~~-~~l~~~~~d---g~i~i~d~~~~ 448 (540)
.|.+++|+. +.|++++.+|.+.|||++..+.+..+.. ..+..++|+|+. ..+++++.| -.|.+||++.-
T Consensus 163 eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~a 242 (1049)
T KOG0307|consen 163 EIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFA 242 (1049)
T ss_pred cceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeeccccc
Confidence 889999998 7899999999999999999988777754 247899999976 345666554 36999998864
Q ss_pred -chhhhhccCcCCcceEEEEecCCC-CeEEEeeCCCcEEEEEecCCcceeEEEecccceeeeEEEEcCCCc-EEEeec-C
Q psy18231 449 -ELLEEYKGHKSGDFRIECCLDSKD-SQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRK-HIMSAC-G 524 (540)
Q Consensus 449 -~~~~~~~~~~~~v~~~~~~~s~~~-~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~-~l~s~~-d 524 (540)
.+++++++|...|.++ .|.+.+ ++|++++.|+.|.+|+.++++.+..+. .....+..+.|+|... .+++++ |
T Consensus 243 ssP~k~~~~H~~Gilsl--sWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p--~~~nW~fdv~w~pr~P~~~A~asfd 318 (1049)
T KOG0307|consen 243 SSPLKILEGHQRGILSL--SWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELP--AQGNWCFDVQWCPRNPSVMAAASFD 318 (1049)
T ss_pred CCchhhhcccccceeee--ccCCCCchhhhcccCCCCeeEecCCCceEeeecC--CCCcceeeeeecCCCcchhhhheec
Confidence 5788899999999888 666665 789999999999999999999999998 6778999999999886 667777 9
Q ss_pred CeeEEEEccccc
Q psy18231 525 NNVKLWTAEEDY 536 (540)
Q Consensus 525 ~~i~iw~~~~~~ 536 (540)
|.|.|+.+.+..
T Consensus 319 gkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 319 GKISIYSLQGTD 330 (1049)
T ss_pred cceeeeeeecCC
Confidence 999999997665
|
|
| >KOG0270|consensus | Back alignment and domain information |
|---|
Probab=99.91 E-value=5e-23 Score=182.00 Aligned_cols=259 Identities=22% Similarity=0.295 Sum_probs=188.4
Q ss_pred eeeecccccceeeeee----cCeEEEEeCC-------CCCEEEEeeCCCcEEEEcCCCC---eeEEE-------------
Q psy18231 149 IRVYRPLTVNRELFVL----SGLMHTRFPV-------DGSYCLTCGSDKKIKLWNPYRN---LLLKT------------- 201 (540)
Q Consensus 149 i~~~~~~~~~~~~~h~----~~v~~v~~sp-------dg~~lat~~~dg~i~iwd~~~~---~~~~~------------- 201 (540)
+.+|+.........|. ..-.|+.|.. -|+|+|.|..|..|.|||+.=- .+...
T Consensus 154 vYVyn~~e~nlYvHHD~ilpafPLC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~ 233 (463)
T KOG0270|consen 154 VYVYNEEEENLYVHHDFILPAFPLCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKG 233 (463)
T ss_pred EEEEcCCCcceeEecceeccCcchhhhhhhcCCCCCCCcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhc
Confidence 4445444433333333 2335666643 3679999999999999997521 11111
Q ss_pred -----eecCCcceeEEEEeeC-CCeEEEeeCCCeEEEEEcCCCceeEeccccCCceeEEEECC-CCCEEEEecCCCcEEE
Q psy18231 202 -----YGGHAHEVNDATAACD-SSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNE-DSSVVISGSQDNTVMM 274 (540)
Q Consensus 202 -----~~~h~~~v~~l~~sp~-~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~~~dg~i~i 274 (540)
-.+|+..|.+++|+.+ .+.||+||.|.+|++||+.++++..++..|.+.|.++.|+| ...+|++|+.|+++.+
T Consensus 234 k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l 313 (463)
T KOG0270|consen 234 KRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVAL 313 (463)
T ss_pred ccccccccchHHHHHHHhccccceeEEecCCCceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEe
Confidence 2369999999999874 45799999999999999999999999999999999999999 5689999999999999
Q ss_pred EEecCCCCCCcchhhhhHhhhhcCCceeEEEEeecccccccccCceeeEEEeeeecccccceeeeeeccceeEEEeeccc
Q psy18231 275 WDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLG 354 (540)
Q Consensus 275 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (540)
.|.+.......
T Consensus 314 ~D~R~~~~s~~--------------------------------------------------------------------- 324 (463)
T KOG0270|consen 314 KDCRDPSNSGK--------------------------------------------------------------------- 324 (463)
T ss_pred eeccCccccCc---------------------------------------------------------------------
Confidence 99986331000
Q ss_pred ceecccccccccccchhhhhhcccccEEEEEecC---CeeEeeeCCCeEEEEeCCCC-ceEEeeeC--CceEEEEEecC-
Q psy18231 355 STQIGDVTPISIHNSCFQALKEARDSITSVHVSD---HEILTASLDCRIRRYDIRTG-NLVTDYVG--EPIVDACFTRD- 427 (540)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~---~~l~~~~~dg~i~iwd~~~~-~~~~~~~~--~~i~~~~~sp~- 427 (540)
.-...+.|..++|++ ..+++++.||+++-+|++.. +++.+++. .+|.++++++.
T Consensus 325 -------------------~wk~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~ 385 (463)
T KOG0270|consen 325 -------------------EWKFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQT 385 (463)
T ss_pred -------------------eEEeccceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCC
Confidence 001246677888887 78899999999999999976 77777764 68999999884
Q ss_pred CcEEEeecCCCeEEEEeccccchhhhhccCcCCcceEE-EEecCCCC-eEEEeeCCCcEEEEEecCCccee
Q psy18231 428 CQCILTCSTDECLRLFDKATGELLEEYKGHKSGDFRIE-CCLDSKDS-QIFCGSSDGKIYKWQLVDSSQIS 496 (540)
Q Consensus 428 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~-~~~s~~~~-~l~s~s~dg~i~iwd~~~~~~~~ 496 (540)
-.++++++.|+.|++|++..-... ....|.-....+. +++.|+-. +++.|+..+.++|||+.+...+.
T Consensus 386 p~~l~t~s~d~~Vklw~~~~~~~~-~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~V~ 455 (463)
T KOG0270|consen 386 PGLLSTASTDKVVKLWKFDVDSPK-SVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSPVR 455 (463)
T ss_pred CcceeeccccceEEEEeecCCCCc-ccccccccccceeecccCCCcceEEEecCccceEEEeecccChhHH
Confidence 467889999999999998654332 1222322222221 13444443 48888888999999998876543
|
|
| >PRK10550 tRNA-dihydrouridine synthase C; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=6.7e-25 Score=198.65 Aligned_cols=108 Identities=23% Similarity=0.287 Sum_probs=95.2
Q ss_pred CceEEeccCCCCCHHHHHHHHHcC-CCEEEeeeeecccccccchhh---ccccc---cCCCCCCEEEEEecCChhHHHHH
Q psy18231 16 NLKHCDSTLWTSKLNFRQLVRSHN-VDLCFTPMIIADSFIKSSKAR---NNEFS---TSPEDTPLVVQFASNNHDDFVRA 88 (540)
Q Consensus 16 ~~~~~ap~~~~~~~~~r~~~~~~~-~~~~~~~~~~~~~~~~~~~~~---~~~~~---~~~~~~~~~~q~~~~~~~~~~~~ 88 (540)
|+++||||+|+||+|||++|+++| ++++|||||+++.+....+.. ..++. ..++|.|+++|++|++|+.|+++
T Consensus 1 ~~~~lAPMag~td~~fR~l~~~~g~~~~~~temvs~~~~~~~~~~~~~~~~~~~~~~~~~~e~p~~vQl~g~~p~~~~~a 80 (312)
T PRK10550 1 MRVLLAPMEGVLDSLVRELLTEVNDYDLCITEFLRVVDQLLPVKVFHRLCPELHNASRTPSGTLVRIQLLGQYPQWLAEN 80 (312)
T ss_pred CCeEEECCCCCcCHHHHHHHHHhCCCCEEEeCCEEechhcccchhHHHHhHHhcccCCCCCCCcEEEEeccCCHHHHHHH
Confidence 689999999999999999999998 899999999998887765444 22333 56889999999999999999999
Q ss_pred HHHhcC-CCCeEeeccCCCceEEEeccccceecccc
Q psy18231 89 TQYVAP-HCNGVDLNCGCPQRWAIKEGYGCALLSKQ 123 (540)
Q Consensus 89 ~~~~~~-~~~~id~~~gc~~~~~~~~g~g~~l~~~~ 123 (540)
|+.+.+ +++.||+|+|||...+.+.|.|++||.++
T Consensus 81 A~~~~~~g~d~IdiN~GCP~~~v~~~g~Gs~Ll~~~ 116 (312)
T PRK10550 81 AARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDP 116 (312)
T ss_pred HHHHHHcCCCEEEEeCCCCchHHhcCCCchHhhcCH
Confidence 987665 89999999999999999999999999985
|
|
| >KOG1273|consensus | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.4e-23 Score=174.39 Aligned_cols=236 Identities=14% Similarity=0.212 Sum_probs=178.6
Q ss_pred eeEEEEeeCCCeEEEeeCCCeEEEEEcCCCceeEeccccCCceeEEEECCCCCEEEEecCCCcEEEEEecCCCCCCcchh
Q psy18231 209 VNDATAACDSSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQVR 288 (540)
Q Consensus 209 v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 288 (540)
..|+.|++.|.+||+|+.||.|.|||+.+...-+.+.+|..+|++++|++||+.|+|+|.|..|.+||+..+.. ..
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~--l~-- 101 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSP--LK-- 101 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCc--ee--
Confidence 78999999999999999999999999999998888999999999999999999999999999999999998862 11
Q ss_pred hhhHhhhhcCCceeEEEEeecccccccccCceeeEEEeeeecccccceeeeeeccceeEEEeecccceeccccccccccc
Q psy18231 289 CLNEALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHN 368 (540)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (540)
T Consensus 102 -------------------------------------------------------------------------------- 101 (405)
T KOG1273|consen 102 -------------------------------------------------------------------------------- 101 (405)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred chhhhhhcccccEEEEEecC---CeeEeeeCCCeEEEEeCCCCceEE--eee-C---CceEEEEEecCCcEEEeecCCCe
Q psy18231 369 SCFQALKEARDSITSVHVSD---HEILTASLDCRIRRYDIRTGNLVT--DYV-G---EPIVDACFTRDCQCILTCSTDEC 439 (540)
Q Consensus 369 ~~~~~~~~~~~~v~~l~~~~---~~l~~~~~dg~i~iwd~~~~~~~~--~~~-~---~~i~~~~~sp~~~~l~~~~~dg~ 439 (540)
-.....+|....|+| +..++.-.+..-.+-++..++... .-. + ..-.+..|.+.|+++++|...|.
T Consensus 102 -----rirf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGk 176 (405)
T KOG1273|consen 102 -----RIRFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGK 176 (405)
T ss_pred -----EEEccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecCcce
Confidence 001246677777777 444444444444444544322111 111 1 12233468999999999999999
Q ss_pred EEEEeccccchhhhhccCc-CCcceEEEEecCCCCeEEEeeCCCcEEEEEecCC-------cc--eeEEEecccceeeeE
Q psy18231 440 LRLFDKATGELLEEYKGHK-SGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDS-------SQ--ISTLIHSVGKAVVNS 509 (540)
Q Consensus 440 i~i~d~~~~~~~~~~~~~~-~~v~~~~~~~s~~~~~l~s~s~dg~i~iwd~~~~-------~~--~~~~~~~~~~~~v~~ 509 (540)
+.++|..+.+++..++-.. ..|..+ -++..|++|+.-+.|..||.|++++- ++ ...+.....+..=.+
T Consensus 177 llv~~a~t~e~vas~rits~~~IK~I--~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ 254 (405)
T KOG1273|consen 177 LLVYDAETLECVASFRITSVQAIKQI--IVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKK 254 (405)
T ss_pred EEEEecchheeeeeeeechheeeeEE--EEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhh
Confidence 9999999999998887665 566666 67889999999999999999998631 11 111111112334567
Q ss_pred EEEcCCCcEEEeec--CCeeEEEEcccc
Q psy18231 510 LCSHPTRKHIMSAC--GNNVKLWTAEED 535 (540)
Q Consensus 510 l~~s~d~~~l~s~~--d~~i~iw~~~~~ 535 (540)
++||.+|.|+++++ ...++||.-..|
T Consensus 255 ccfs~dgeYv~a~s~~aHaLYIWE~~~G 282 (405)
T KOG1273|consen 255 CCFSGDGEYVCAGSARAHALYIWEKSIG 282 (405)
T ss_pred eeecCCccEEEeccccceeEEEEecCCc
Confidence 89999999999988 779999987654
|
|
| >KOG2055|consensus | Back alignment and domain information |
|---|
Probab=99.91 E-value=6.9e-23 Score=181.90 Aligned_cols=240 Identities=13% Similarity=0.177 Sum_probs=199.2
Q ss_pred CcceeEEEEeeCCCeEEEeeCCCeEEEEEcCC--CceeEeccccCCceeEEEECCCCC-EEEEecCCCcEEEEEecCCCC
Q psy18231 206 AHEVNDATAACDSSQIASGASDKSVILWEVTT--GQPVRRWREHASKVTCVKFNEDSS-VVISGSQDNTVMMWDVKSRSH 282 (540)
Q Consensus 206 ~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~--~~~~~~~~~h~~~v~~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~ 282 (540)
.+.|+++.|+|....|++++.|++++||.+.. ...++.+.-...+|.+..|.|+|. .+++++....+..||+.+.+.
T Consensus 213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~ 292 (514)
T KOG2055|consen 213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKV 292 (514)
T ss_pred cCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeecccccc
Confidence 57899999999999999999999999998853 345566666688999999999998 899999999999999988874
Q ss_pred CCcchhhhhHhhhhcCCceeEEEEeecccccccccCceeeEEEeeeecccccceeeeeeccceeEEEeecccceeccccc
Q psy18231 283 HPIQVRCLNEALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVT 362 (540)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (540)
..+.
T Consensus 293 ~k~~---------------------------------------------------------------------------- 296 (514)
T KOG2055|consen 293 TKLK---------------------------------------------------------------------------- 296 (514)
T ss_pred cccc----------------------------------------------------------------------------
Confidence 2222
Q ss_pred ccccccchhhhhhcc-cccEEEEEecC--CeeEeeeCCCeEEEEeCCCCceEEeeeC-CceEEEEEecCCcEEEeecCCC
Q psy18231 363 PISIHNSCFQALKEA-RDSITSVHVSD--HEILTASLDCRIRRYDIRTGNLVTDYVG-EPIVDACFTRDCQCILTCSTDE 438 (540)
Q Consensus 363 ~~~~~~~~~~~~~~~-~~~v~~l~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~i~~~~~sp~~~~l~~~~~dg 438 (540)
.+.++ ...+....+++ ++++..+..|.|.+....+++.+..+.- +.+..++|+.+++.|++++.+|
T Consensus 297 ----------~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~KieG~v~~~~fsSdsk~l~~~~~~G 366 (514)
T KOG2055|consen 297 ----------PPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKIEGVVSDFTFSSDSKELLASGGTG 366 (514)
T ss_pred ----------CCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheeeeccEEeeEEEecCCcEEEEEcCCc
Confidence 11111 22344455555 8899999999999999999999998874 6899999999999999999999
Q ss_pred eEEEEeccccchhhhhccCcCCcceEEEEecCCCCeEEEeeCCCcEEEEEecC------CcceeEEEecccceeeeEEEE
Q psy18231 439 CLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVD------SSQISTLIHSVGKAVVNSLCS 512 (540)
Q Consensus 439 ~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~s~~~~~l~s~s~dg~i~iwd~~~------~~~~~~~~~~~~~~~v~~l~~ 512 (540)
.|.+||++...+++.+... +.+....+|.|+++.|||+||..|.|.|||..+ .+++.++. .-...|+++.|
T Consensus 367 eV~v~nl~~~~~~~rf~D~-G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~d--NLtt~Itsl~F 443 (514)
T KOG2055|consen 367 EVYVWNLRQNSCLHRFVDD-GSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVD--NLTTAITSLQF 443 (514)
T ss_pred eEEEEecCCcceEEEEeec-CccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhh--hhheeeeeeee
Confidence 9999999999888888743 456777779999999999999999999999653 46677666 56788999999
Q ss_pred cCCCcEEEeec---CCeeEEEEccc
Q psy18231 513 HPTRKHIMSAC---GNNVKLWTAEE 534 (540)
Q Consensus 513 s~d~~~l~s~~---d~~i~iw~~~~ 534 (540)
+||+++||.++ +..+++-.+++
T Consensus 444 n~d~qiLAiaS~~~knalrLVHvPS 468 (514)
T KOG2055|consen 444 NHDAQILAIASRVKKNALRLVHVPS 468 (514)
T ss_pred CcchhhhhhhhhccccceEEEeccc
Confidence 99999999888 67888877653
|
|
| >KOG4378|consensus | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.1e-22 Score=182.23 Aligned_cols=280 Identities=13% Similarity=0.189 Sum_probs=209.0
Q ss_pred cccceeeeecccccc--eeee-ee--cCeEEEEeCCCCCE-EEEeeCCCcEEEEcCCC--CeeEEEeecCCcceeEEEEe
Q psy18231 144 PKEWSIRVYRPLTVN--RELF-VL--SGLMHTRFPVDGSY-CLTCGSDKKIKLWNPYR--NLLLKTYGGHAHEVNDATAA 215 (540)
Q Consensus 144 ~~~~~i~~~~~~~~~--~~~~-h~--~~v~~v~~spdg~~-lat~~~dg~i~iwd~~~--~~~~~~~~~h~~~v~~l~~s 215 (540)
+...++++|+..... .+.. |+ -.+.++.|+....+ +|+.+.|..+++|.-.. ++....-+.....-.|++..
T Consensus 9 S~gd~~kl~D~s~~~~~~~~~~~t~~pg~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd~~~Cv~~~ 88 (673)
T KOG4378|consen 9 STGDKTKLSDFSDLETKSEYVHQTAEPGDFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPEVPRVRKLTGDNAFCVACA 88 (673)
T ss_pred ccCCceEEeecccccCccccccCCCCCcceeeeccccceEEEeecCCceeEEEecccCCCCccceeeccccchHHHHhhh
Confidence 334457778765543 1222 22 34899999887642 33445688999997322 22221111112234455555
Q ss_pred eCCCeEEEeeCCCeEEEEEcCCCceeEeccccCCceeEEEECCCCCEEEEecCCCcEEEEEecCCCCCCcchhhhhHhhh
Q psy18231 216 CDSSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQVRCLNEALK 295 (540)
Q Consensus 216 p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 295 (540)
....++++|+..+.|+|||++...+.+.+++|.+.|+++.++....+||+++..|.|.|..+.++....
T Consensus 89 s~S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt----------- 157 (673)
T KOG4378|consen 89 SQSLYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTT----------- 157 (673)
T ss_pred hcceeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCcccc-----------
Confidence 555899999999999999999777788899999999999999989999999999999999998876311
Q ss_pred hcCCceeEEEEeecccccccccCceeeEEEeeeecccccceeeeeeccceeEEEeecccceecccccccccccchhhhhh
Q psy18231 296 EARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALK 375 (540)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (540)
.+.
T Consensus 158 -----------------------------------------------------------------------------~f~ 160 (673)
T KOG4378|consen 158 -----------------------------------------------------------------------------TFT 160 (673)
T ss_pred -----------------------------------------------------------------------------cee
Confidence 111
Q ss_pred -cccccEEEEEecC---CeeEeeeCCCeEEEEeCCCCceEEeee---CCceEEEEEec-CCcEEEeecCCCeEEEEeccc
Q psy18231 376 -EARDSITSVHVSD---HEILTASLDCRIRRYDIRTGNLVTDYV---GEPIVDACFTR-DCQCILTCSTDECLRLFDKAT 447 (540)
Q Consensus 376 -~~~~~v~~l~~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~---~~~i~~~~~sp-~~~~l~~~~~dg~i~i~d~~~ 447 (540)
+....|.-+.+++ .+|.+++.+|.|.+||+....++..+. ..+...++|+| +..+|++.+.|..|.+||...
T Consensus 161 ~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s 240 (673)
T KOG4378|consen 161 IDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRS 240 (673)
T ss_pred cCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeeccc
Confidence 1133455778887 678889999999999999888876664 36888999999 556788899999999999997
Q ss_pred cchhhhhccCcCCcceEEEEecCCCCeEEEeeCCCcEEEEEecCC-cceeEEEecccceeeeEEEEcCCC
Q psy18231 448 GELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDS-SQISTLIHSVGKAVVNSLCSHPTR 516 (540)
Q Consensus 448 ~~~~~~~~~~~~~v~~~~~~~s~~~~~l~s~s~dg~i~iwd~~~~-~~~~~~~~~~~~~~v~~l~~s~d~ 516 (540)
.+....+.. ..+...+ +|+++|.+|+.|+..|.|..||++.. .++.++. .|...|++++|-|.-
T Consensus 241 ~~s~~~l~y-~~Plstv--af~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~s--ah~~sVt~vafq~s~ 305 (673)
T KOG4378|consen 241 QASTDRLTY-SHPLSTV--AFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRS--AHDASVTRVAFQPSP 305 (673)
T ss_pred ccccceeee-cCCccee--eecCCceEEEeecCCceEEEEecccCCCCceEee--ecccceeEEEeeecc
Confidence 776666543 3345566 89999999999999999999999865 5677777 899999999998764
|
|
| >PRK10415 tRNA-dihydrouridine synthase B; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.3e-24 Score=198.78 Aligned_cols=114 Identities=19% Similarity=0.215 Sum_probs=101.1
Q ss_pred cceecCCceEEeccCCCCCHHHHHHHHHcCCCEEEeeeeecccccccchhhccccccCCCCCCEEEEEecCChhHHHHHH
Q psy18231 10 RSTLLKNLKHCDSTLWTSKLNFRQLVRSHNVDLCFTPMIIADSFIKSSKARNNEFSTSPEDTPLVVQFASNNHDDFVRAT 89 (540)
Q Consensus 10 ~~~~~~~~~~~ap~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~ 89 (540)
+.+.++++++||||+|+||+|||++|+++|++++||||++++.+..........+...+++.|+++|++|++|++|++++
T Consensus 4 ~~~~~~~~~~lAPM~g~td~~fR~l~~~~g~~~~~temvs~~~~~~~~~~~~~~~~~~~~~~~~~vQl~g~~~~~~~~aa 83 (321)
T PRK10415 4 GQYQLRNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHIDEPGIRTVQIAGSDPKEMADAA 83 (321)
T ss_pred CCccCCCCEEecCCCCCCcHHHHHHHHHHCCCEEEEccEEcchhhhcCHhHHHHhccCccCCCEEEEEeCCCHHHHHHHH
Confidence 45677889999999999999999999999999999999999987666655555555567789999999999999999999
Q ss_pred HHhc-CCCCeEeeccCCCceEEEeccccceecccc
Q psy18231 90 QYVA-PHCNGVDLNCGCPQRWAIKEGYGCALLSKQ 123 (540)
Q Consensus 90 ~~~~-~~~~~id~~~gc~~~~~~~~g~g~~l~~~~ 123 (540)
+.+. .+++.||+|+|||..++...|.|++|++++
T Consensus 84 ~~~~~~g~d~IdlN~gCP~~~v~~~g~Gs~ll~~p 118 (321)
T PRK10415 84 RINVESGAQIIDINMGCPAKKVNRKLAGSALLQYP 118 (321)
T ss_pred HHHHHCCCCEEEEeCCCCHHHHcCCCcccHHhcCH
Confidence 9755 488999999999999999999999999985
|
|
| >KOG4227|consensus | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.4e-22 Score=174.76 Aligned_cols=287 Identities=14% Similarity=0.149 Sum_probs=216.1
Q ss_pred ceeeeeecCeEEEEeCCCCCEEEEeeCCCcEEEEcCCC------CeeEEEee-cCCcceeEEEEeeCCCeEEEeeCCCeE
Q psy18231 158 NRELFVLSGLMHTRFPVDGSYCLTCGSDKKIKLWNPYR------NLLLKTYG-GHAHEVNDATAACDSSQIASGASDKSV 230 (540)
Q Consensus 158 ~~~~~h~~~v~~v~~spdg~~lat~~~dg~i~iwd~~~------~~~~~~~~-~h~~~v~~l~~sp~~~~l~s~s~dg~i 230 (540)
+-..+|++.|+++.||.++++|++|+.|..+++|+++. .+++.... .|...|.|++|......|++|..+++|
T Consensus 50 KD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~V 129 (609)
T KOG4227|consen 50 KDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTV 129 (609)
T ss_pred hhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCccee
Confidence 34568999999999999999999999999999999753 24444432 367899999999999999999999999
Q ss_pred EEEEcCCCceeEeccc--cCCceeEEEECCCCCEEEEecCCCcEEEEEecCCCCCCcchhhhhHhhhhcCCceeEEEEee
Q psy18231 231 ILWEVTTGQPVRRWRE--HASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLV 308 (540)
Q Consensus 231 ~iwd~~~~~~~~~~~~--h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (540)
...|+++.+.+..+.. ..+.|+.+..+|..+.|++.+.+|.|.+||.+........
T Consensus 130 I~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~---------------------- 187 (609)
T KOG4227|consen 130 IKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISL---------------------- 187 (609)
T ss_pred EeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCce----------------------
Confidence 9999999998877642 2358999999999899999999999999999876521100
Q ss_pred cccccccccCceeeEEEeeeecccccceeeeeeccceeEEEeecccceecccccccccccchhhhhhcccccEEEEEecC
Q psy18231 309 KSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEARDSITSVHVSD 388 (540)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~ 388 (540)
..+.........+.|+|
T Consensus 188 ---------------------------------------------------------------~~~AN~~~~F~t~~F~P 204 (609)
T KOG4227|consen 188 ---------------------------------------------------------------VLPANSGKNFYTAEFHP 204 (609)
T ss_pred ---------------------------------------------------------------eeecCCCccceeeeecC
Confidence 01111233455677877
Q ss_pred ---CeeEeeeCCCeEEEEeCCCCce-EEeeeC--------CceEEEEEecCCcEEEeecCCCeEEEEeccccch-hhhhc
Q psy18231 389 ---HEILTASLDCRIRRYDIRTGNL-VTDYVG--------EPIVDACFTRDCQCILTCSTDECLRLFDKATGEL-LEEYK 455 (540)
Q Consensus 389 ---~~l~~~~~dg~i~iwd~~~~~~-~~~~~~--------~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~-~~~~~ 455 (540)
.+|++.+..+-+-+||.+.... +....+ ..-.++.|+|+|+.|.+--....-.+||+-+.++ +..+.
T Consensus 205 ~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~D 284 (609)
T KOG4227|consen 205 ETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVLKSD 284 (609)
T ss_pred CCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccceeEecc
Confidence 7899999999999999986542 222211 1236778999999998877777777888876443 22332
Q ss_pred cCcCC-----cceEEEEecCCCCeEEEeeCCCcEEEEEecCC-----------------------cceeEEEecccceee
Q psy18231 456 GHKSG-----DFRIECCLDSKDSQIFCGSSDGKIYKWQLVDS-----------------------SQISTLIHSVGKAVV 507 (540)
Q Consensus 456 ~~~~~-----v~~~~~~~s~~~~~l~s~s~dg~i~iwd~~~~-----------------------~~~~~~~~~~~~~~v 507 (540)
|... -+.-.++|..| ..+++|+.+-.|++|.+... +.+..++ +|.+.+
T Consensus 285 -~N~~GY~N~~T~KS~~F~~D-~~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLr--GHRSv~ 360 (609)
T KOG4227|consen 285 -HNPNGYCNIKTIKSMTFIDD-YTVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLR--GHRSVP 360 (609)
T ss_pred -CCCCcceeeeeeeeeeeecc-eeeeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeEEEe--cccccc
Confidence 3221 12223356544 45999999999999997431 1234556 899999
Q ss_pred eEEEEcCCCcEEEeec-CCeeEEEEcc
Q psy18231 508 NSLCSHPTRKHIMSAC-GNNVKLWTAE 533 (540)
Q Consensus 508 ~~l~~s~d~~~l~s~~-d~~i~iw~~~ 533 (540)
+.+.|+|...+|++++ .+.++||.--
T Consensus 361 NQVRF~~H~~~l~SSGVE~~~KlWS~~ 387 (609)
T KOG4227|consen 361 NQVRFSQHNNLLVSSGVENSFKLWSDH 387 (609)
T ss_pred cceeecCCcceEeccchhhheeccccc
Confidence 9999999999999999 9999999753
|
|
| >KOG0322|consensus | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.2e-22 Score=166.04 Aligned_cols=292 Identities=14% Similarity=0.170 Sum_probs=198.6
Q ss_pred eEEEeecCCcceeEEEEeeCCCeEEEeeCCCeEEEEEcCCCceeEecc-ccCCceeEEEECCCCCEEEEecCCCcEEEEE
Q psy18231 198 LLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPVRRWR-EHASKVTCVKFNEDSSVVISGSQDNTVMMWD 276 (540)
Q Consensus 198 ~~~~~~~h~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd 276 (540)
+...+++|.+.|+++.|-.+++ |.+|..-|.|++|++.+.+.+..++ .|...|+.+.-.|+ ..+.+-+.|+.+.+|+
T Consensus 6 P~fvLRp~~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~~L~lw~ 83 (323)
T KOG0322|consen 6 PFFVLRPHSSSVTSVLFQANER-LMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPN-DSLDTQGRDPLLILWT 83 (323)
T ss_pred CeeEeccccchheehhhccchh-hhcccccceEEEEEeecCccchhhhhhccceeeceeecCC-cchhhcCCCceEEEEE
Confidence 4566778999999999987664 9999999999999999998888887 67888999999887 4688889999999999
Q ss_pred ecCCCCCCcchhhhhHhhhhcCCceeEEEEeecccccccccCceeeEEEeeeecccccceeeeeeccceeEEEeecccce
Q psy18231 277 VKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGST 356 (540)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (540)
+.......+.. ..+..+.+........+... ..+..+...+..
T Consensus 84 ia~s~~i~i~S--------------i~~nslgFCrfSl~~~~k~~-----------------------eqll~yp~rgsd 126 (323)
T KOG0322|consen 84 IAYSAFISIHS--------------IVVNSLGFCRFSLVKKPKNS-----------------------EQLLEYPSRGSD 126 (323)
T ss_pred ccCcceEEEee--------------eeccccccccceeccCCCcc-----------------------hhheecCCcccc
Confidence 97644211110 00000000000000000000 001111111111
Q ss_pred ecccccccccccch--hhhhhcccccEEEEEecC-----CeeEeeeCCCeEEEEeCCCCceEEeee------------CC
Q psy18231 357 QIGDVTPISIHNSC--FQALKEARDSITSVHVSD-----HEILTASLDCRIRRYDIRTGNLVTDYV------------GE 417 (540)
Q Consensus 357 ~~~~~~~~~~~~~~--~~~~~~~~~~v~~l~~~~-----~~l~~~~~dg~i~iwd~~~~~~~~~~~------------~~ 417 (540)
.............+ -....+..+.+++..+.- -++++|.++|.+.+||+.++..+..+. ..
T Consensus 127 e~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~q 206 (323)
T KOG0322|consen 127 ETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQ 206 (323)
T ss_pred hhhhhccCccceeEccCchhccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccC
Confidence 10000000000000 001223456677776432 457788899999999999985554443 25
Q ss_pred ceEEEEEecCCcEEEeecCCCeEEEEecccc--ch--hhhhccCcCCcceEEEEecCCCCeEEEeeCCCcEEEEEecCCc
Q psy18231 418 PIVDACFTRDCQCILTCSTDECLRLFDKATG--EL--LEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSS 493 (540)
Q Consensus 418 ~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~--~~--~~~~~~~~~~v~~~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~ 493 (540)
++.++.|.+.-..=++|+.+..+..|++... .+ -.+..-....+..+ ..-||++.+|++++|+.||||..++..
T Consensus 207 pvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~~e~~lknpGv~gv--rIRpD~KIlATAGWD~RiRVyswrtl~ 284 (323)
T KOG0322|consen 207 PVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIRKEITLKNPGVSGV--RIRPDGKILATAGWDHRIRVYSWRTLN 284 (323)
T ss_pred cceeeeechhhcCCcCCCccccceeeeeccccCcccccceEEecCCCccce--EEccCCcEEeecccCCcEEEEEeccCC
Confidence 7999999987777788888889999987643 21 12222233445556 677999999999999999999999999
Q ss_pred ceeEEEecccceeeeEEEEcCCCcEEEeec-CCeeEEEEc
Q psy18231 494 QISTLIHSVGKAVVNSLCSHPTRKHIMSAC-GNNVKLWTA 532 (540)
Q Consensus 494 ~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~-d~~i~iw~~ 532 (540)
++..++ .|.+.|++++|+|+..++|+++ |++|.+|++
T Consensus 285 pLAVLk--yHsagvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 285 PLAVLK--YHSAGVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred chhhhh--hhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence 999999 8999999999999999999999 999999986
|
|
| >KOG1538|consensus | Back alignment and domain information |
|---|
Probab=99.90 E-value=9e-22 Score=182.47 Aligned_cols=267 Identities=16% Similarity=0.306 Sum_probs=210.6
Q ss_pred CeEEEEeCCCCCEEEEeeCCCcEEEEcCCCCeeEEEeecCCcceeEEEEeeCCCeEEEeeCCCeEEEEEcCCCceeEecc
Q psy18231 166 GLMHTRFPVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPVRRWR 245 (540)
Q Consensus 166 ~v~~v~~spdg~~lat~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~ 245 (540)
.|..++|-|||..|+.+. +..+.+||+..|..+.++++|++.|++++|+.||+.+|+|+.|..|.+|+-.-.-.++ +
T Consensus 14 ci~d~afkPDGsqL~lAA-g~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~Lk-Y- 90 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAA-GSRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGILK-Y- 90 (1081)
T ss_pred chheeEECCCCceEEEec-CCEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEecccccceee-e-
Confidence 899999999999888766 5678899999999999999999999999999999999999999999999754322222 2
Q ss_pred ccCCceeEEEECCCCCEEEEecCCCcEEEEEecCCCCCCcchhhhhHhhhhcCCceeEEEEeecccccccccCceeeEEE
Q psy18231 246 EHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHLSNGLLTKLVF 325 (540)
Q Consensus 246 ~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (540)
.|.+.|.|+.|+|-...|++++-. ..-+|.......
T Consensus 91 SH~D~IQCMsFNP~~h~LasCsLs-dFglWS~~qK~V------------------------------------------- 126 (1081)
T KOG1538|consen 91 SHNDAIQCMSFNPITHQLASCSLS-DFGLWSPEQKSV------------------------------------------- 126 (1081)
T ss_pred ccCCeeeEeecCchHHHhhhcchh-hccccChhhhhH-------------------------------------------
Confidence 699999999999988899998753 567787654321
Q ss_pred eeeecccccceeeeeeccceeEEEeecccceecccccccccccchhhhhhcccccEEEEEecC--CeeEeeeCCCeEEEE
Q psy18231 326 AFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEARDSITSVHVSD--HEILTASLDCRIRRY 403 (540)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~--~~l~~~~~dg~i~iw 403 (540)
........+.+.+|.. ++++.|-.+|+|.+-
T Consensus 127 -----------------------------------------------~K~kss~R~~~CsWtnDGqylalG~~nGTIsiR 159 (1081)
T KOG1538|consen 127 -----------------------------------------------SKHKSSSRIICCSWTNDGQYLALGMFNGTISIR 159 (1081)
T ss_pred -----------------------------------------------HhhhhheeEEEeeecCCCcEEEEeccCceEEee
Confidence 1112245677888876 899999999999998
Q ss_pred eCCCCceEEeee-----CCceEEEEEecCC-----cEEEeecCCCeEEEEeccccchhhhhccCcCCcceEEEEecCCCC
Q psy18231 404 DIRTGNLVTDYV-----GEPIVDACFTRDC-----QCILTCSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDS 473 (540)
Q Consensus 404 d~~~~~~~~~~~-----~~~i~~~~~sp~~-----~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~s~~~~ 473 (540)
+-. ++....+. ..+|.+++|+|.. ..+++.....++..|.+. |+.+..-+.-.-.-.++ .+.++|.
T Consensus 160 Nk~-gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~Ls-G~~Igk~r~L~FdP~Ci--sYf~NGE 235 (1081)
T KOG1538|consen 160 NKN-GEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLS-GKQIGKDRALNFDPCCI--SYFTNGE 235 (1081)
T ss_pred cCC-CCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEec-ceeecccccCCCCchhh--eeccCCc
Confidence 644 44333332 2689999999953 467778888888888764 54443322222223345 7889999
Q ss_pred eEEEeeCCCcEEEEEecCCcceeEEEecccceeeeEEEEcCCCcEEEeec-CCeeEEEEcc
Q psy18231 474 QIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC-GNNVKLWTAE 533 (540)
Q Consensus 474 ~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~-d~~i~iw~~~ 533 (540)
++..|+.|+.+.+|- +.|-.+.++. .....|..++..|++++++.|+ ||+|-.|++.
T Consensus 236 y~LiGGsdk~L~~fT-R~GvrLGTvg--~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl~ 293 (1081)
T KOG1538|consen 236 YILLGGSDKQLSLFT-RDGVRLGTVG--EQDSWIWTVQAKPNSQYVVVGCQDGTIACYNLI 293 (1081)
T ss_pred EEEEccCCCceEEEe-ecCeEEeecc--ccceeEEEEEEccCCceEEEEEccCeeehhhhH
Confidence 999999999999997 7788888887 5778999999999999999999 9999988864
|
|
| >PRK11815 tRNA-dihydrouridine synthase A; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=7.4e-24 Score=194.96 Aligned_cols=108 Identities=19% Similarity=0.361 Sum_probs=99.7
Q ss_pred cCCceEEeccCCCCCHHHHHHHHHcCC-CEEEeeeeecccccccchhhccccccCCCCCCEEEEEecCChhHHHHHHHHh
Q psy18231 14 LKNLKHCDSTLWTSKLNFRQLVRSHNV-DLCFTPMIIADSFIKSSKARNNEFSTSPEDTPLVVQFASNNHDDFVRATQYV 92 (540)
Q Consensus 14 ~~~~~~~ap~~~~~~~~~r~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~ 92 (540)
-+++++||||+|+||+|||++|+++|+ +++||||++++.++++. ....+...++|.|+++|++|++|+.++++|+.+
T Consensus 9 ~~~~~~lAPM~g~td~~fR~~~~~~g~~~~~~temv~~~~l~~~~--~~~~l~~~~~e~p~~vQl~g~~p~~~~~aA~~~ 86 (333)
T PRK11815 9 PSRRFSVAPMMDWTDRHCRYFHRLLSRHALLYTEMVTTGAIIHGD--RERLLAFDPEEHPVALQLGGSDPADLAEAAKLA 86 (333)
T ss_pred CCCCEEEeCCCCCcCHHHHHHHHHhCCCCEEEECCEEeccccccC--HHHHhccCCCCCcEEEEEeCCCHHHHHHHHHHH
Confidence 356899999999999999999999997 99999999999999876 456777789999999999999999999999988
Q ss_pred cC-CCCeEeeccCCCceEEEeccccceecccc
Q psy18231 93 AP-HCNGVDLNCGCPQRWAIKEGYGCALLSKQ 123 (540)
Q Consensus 93 ~~-~~~~id~~~gc~~~~~~~~g~g~~l~~~~ 123 (540)
.+ ++|+||+|+|||.......++|++|+.++
T Consensus 87 ~~~g~d~IdlN~gCP~~~v~~~~~Gs~L~~~p 118 (333)
T PRK11815 87 EDWGYDEINLNVGCPSDRVQNGRFGACLMAEP 118 (333)
T ss_pred HhcCCCEEEEcCCCCHHHccCCCeeeHHhcCH
Confidence 77 78999999999999988999999999985
|
|
| >KOG4378|consensus | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.2e-22 Score=180.25 Aligned_cols=257 Identities=15% Similarity=0.223 Sum_probs=205.6
Q ss_pred cceeccccchhhhhhcccccceeeeecccccc----eee-eeecCeEEEEeCCCCCEEEEeeCCCcEEEEcCCCCeeEEE
Q psy18231 127 PLLFSLPRTITRILYELPKEWSIRVYRPLTVN----REL-FVLSGLMHTRFPVDGSYCLTCGSDKKIKLWNPYRNLLLKT 201 (540)
Q Consensus 127 ~~~~s~~~~~~~~~~~~~~~~~i~~~~~~~~~----~~~-~h~~~v~~v~~spdg~~lat~~~dg~i~iwd~~~~~~~~~ 201 (540)
...|.+........++.+.+..+++|.-.... +.. .-.+.-.|++......|+++|+..++|+|||+....+.+.
T Consensus 37 ~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~hr~ 116 (673)
T KOG4378|consen 37 DFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPEVPRVRKLTGDNAFCVACASQSLYEISGGQSGCVKIWDLRAKLIHRF 116 (673)
T ss_pred ceeeeccccceEEEeecCCceeEEEecccCCCCccceeeccccchHHHHhhhhcceeeeccCcCceeeehhhHHHHHhhh
Confidence 44444454444555677888899999765431 110 0112334444444448999999999999999998888888
Q ss_pred eecCCcceeEEEEeeCCCeEEEeeCCCeEEEEEcCCCceeEecccc-CCceeEEEECCCCC-EEEEecCCCcEEEEEecC
Q psy18231 202 YGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPVRRWREH-ASKVTCVKFNEDSS-VVISGSQDNTVMMWDVKS 279 (540)
Q Consensus 202 ~~~h~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h-~~~v~~~~~~~~~~-~l~s~~~dg~i~iwd~~~ 279 (540)
+++|+..|+++.++-...+||+++..|.|.|..+.++.....+... ...|.-+.|++..+ +|.+++.+|.|.+||+..
T Consensus 117 lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g 196 (673)
T KOG4378|consen 117 LKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQG 196 (673)
T ss_pred ccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccC
Confidence 9999999999999999999999999999999999998877777544 34566899999664 667889999999999987
Q ss_pred CCCCCcchhhhhHhhhhcCCceeEEEEeecccccccccCceeeEEEeeeecccccceeeeeeccceeEEEeecccceecc
Q psy18231 280 RSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIG 359 (540)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (540)
...
T Consensus 197 ~sp----------------------------------------------------------------------------- 199 (673)
T KOG4378|consen 197 MSP----------------------------------------------------------------------------- 199 (673)
T ss_pred CCc-----------------------------------------------------------------------------
Confidence 652
Q ss_pred cccccccccchhhhhhcccccEEEEEecC---CeeEeeeCCCeEEEEeCCCCceEEeee-CCceEEEEEecCCcEEEeec
Q psy18231 360 DVTPISIHNSCFQALKEARDSITSVHVSD---HEILTASLDCRIRRYDIRTGNLVTDYV-GEPIVDACFTRDCQCILTCS 435 (540)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~v~~l~~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~i~~~~~sp~~~~l~~~~ 435 (540)
.......|..+...|+|+| .+|++.+.|..|.+||....+....+. .++...++|+++|.+|++|+
T Consensus 200 ----------~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~y~~Plstvaf~~~G~~L~aG~ 269 (673)
T KOG4378|consen 200 ----------IFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLTYSHPLSTVAFSECGTYLCAGN 269 (673)
T ss_pred ----------ccchhhhccCCcCcceecCCccceEEEecccceEEEeecccccccceeeecCCcceeeecCCceEEEeec
Confidence 1124567889999999998 778899999999999999887776665 48999999999999999999
Q ss_pred CCCeEEEEecccc-chhhhhccCcCCcceEEEEecC
Q psy18231 436 TDECLRLFDKATG-ELLEEYKGHKSGDFRIECCLDS 470 (540)
Q Consensus 436 ~dg~i~i~d~~~~-~~~~~~~~~~~~v~~~~~~~s~ 470 (540)
..|.|..||++.. .++.++..|...|+++++.++|
T Consensus 270 s~G~~i~YD~R~~k~Pv~v~sah~~sVt~vafq~s~ 305 (673)
T KOG4378|consen 270 SKGELIAYDMRSTKAPVAVRSAHDASVTRVAFQPSP 305 (673)
T ss_pred CCceEEEEecccCCCCceEeeecccceeEEEeeecc
Confidence 9999999999864 6788999999999999777776
|
|
| >KOG0302|consensus | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.7e-22 Score=173.73 Aligned_cols=204 Identities=18% Similarity=0.320 Sum_probs=165.2
Q ss_pred ceeeeeecCeEEEEeCCCC--CEEEEeeCCCcEEEEcCCC----------------CeeEEEeecCCcceeEEEEee-CC
Q psy18231 158 NRELFVLSGLMHTRFPVDG--SYCLTCGSDKKIKLWNPYR----------------NLLLKTYGGHAHEVNDATAAC-DS 218 (540)
Q Consensus 158 ~~~~~h~~~v~~v~~spdg--~~lat~~~dg~i~iwd~~~----------------~~~~~~~~~h~~~v~~l~~sp-~~ 218 (540)
.+...|.+.++.+.-++-+ .+.|+-+..|.|.||++.. .+++.++.+|...=+.|+||| ..
T Consensus 145 ~~~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~ 224 (440)
T KOG0302|consen 145 MKSIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKT 224 (440)
T ss_pred ccccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccc
Confidence 3456788999999888765 4556667899999999642 357888999999999999999 23
Q ss_pred CeEEEeeCCCeEEEEEcCCCceeE---eccccCCceeEEEECC-CCCEEEEecCCCcEEEEEecCCCCCCcchhhhhHhh
Q psy18231 219 SQIASGASDKSVILWEVTTGQPVR---RWREHASKVTCVKFNE-DSSVVISGSQDNTVMMWDVKSRSHHPIQVRCLNEAL 294 (540)
Q Consensus 219 ~~l~s~s~dg~i~iwd~~~~~~~~---~~~~h~~~v~~~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 294 (540)
..|+||.--+.|++|...+|.-.. -+.+|+..|-.++|+| ....|+++|.||+|+|||++.+...+..
T Consensus 225 g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~-------- 296 (440)
T KOG0302|consen 225 GRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAV-------- 296 (440)
T ss_pred cccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCcccee--------
Confidence 348888888999999998875432 3567999999999999 4568999999999999999988532221
Q ss_pred hhcCCceeEEEEeecccccccccCceeeEEEeeeecccccceeeeeeccceeEEEeecccceecccccccccccchhhhh
Q psy18231 295 KEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQAL 374 (540)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (540)
..
T Consensus 297 ------------------------------------------------------------------------------~~ 298 (440)
T KOG0302|consen 297 ------------------------------------------------------------------------------ST 298 (440)
T ss_pred ------------------------------------------------------------------------------Ee
Confidence 33
Q ss_pred hcccccEEEEEecC--CeeEeeeCCCeEEEEeCCCC---ceEEee--eCCceEEEEEec-CCcEEEeecCCCeEEEEecc
Q psy18231 375 KEARDSITSVHVSD--HEILTASLDCRIRRYDIRTG---NLVTDY--VGEPIVDACFTR-DCQCILTCSTDECLRLFDKA 446 (540)
Q Consensus 375 ~~~~~~v~~l~~~~--~~l~~~~~dg~i~iwd~~~~---~~~~~~--~~~~i~~~~~sp-~~~~l~~~~~dg~i~i~d~~ 446 (540)
+.|.+.|+.|+|+. .+|++|+.||+++|||++.- +++..+ +..+|+++.|+| +...|++++.|.+|.|||+.
T Consensus 299 kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDls 378 (440)
T KOG0302|consen 299 KAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLS 378 (440)
T ss_pred eccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEee
Confidence 67899999999998 78999999999999999854 344444 457999999999 45678888999999999986
Q ss_pred c
Q psy18231 447 T 447 (540)
Q Consensus 447 ~ 447 (540)
.
T Consensus 379 v 379 (440)
T KOG0302|consen 379 V 379 (440)
T ss_pred c
Confidence 4
|
|
| >KOG0642|consensus | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.7e-22 Score=184.01 Aligned_cols=252 Identities=18% Similarity=0.217 Sum_probs=195.3
Q ss_pred eeeeeecCeEEEEeCCCCCEEEEeeCCCcEEEEcCCC--------CeeEEEeecCCcceeEEEEeeCCCeEEEeeCCCeE
Q psy18231 159 RELFVLSGLMHTRFPVDGSYCLTCGSDKKIKLWNPYR--------NLLLKTYGGHAHEVNDATAACDSSQIASGASDKSV 230 (540)
Q Consensus 159 ~~~~h~~~v~~v~~spdg~~lat~~~dg~i~iwd~~~--------~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~dg~i 230 (540)
....|.+.|+.++|.|....|++++.||++.+|+++. -+++.+|.+|.++|.|++..+++.++++|+.||+|
T Consensus 289 tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I 368 (577)
T KOG0642|consen 289 TLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTI 368 (577)
T ss_pred eeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCcee
Confidence 3456999999999999999999999999999999832 26788999999999999999999999999999999
Q ss_pred EEEEcCCC----------ceeEeccccCCceeEEEECCCCCEEEEecCCCcEEEEEecCCCCCCcchhhhhHhhhhcCCc
Q psy18231 231 ILWEVTTG----------QPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQVRCLNEALKEARDS 300 (540)
Q Consensus 231 ~iwd~~~~----------~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 300 (540)
+.|++... .....+.||.+.|+.+++++....|++++.||+++.|+...... ...
T Consensus 369 ~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~-~~f-------------- 433 (577)
T KOG0642|consen 369 RCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP-CTF-------------- 433 (577)
T ss_pred eeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCc-ccc--------------
Confidence 99966422 23345779999999999999988999999999999999876552 000
Q ss_pred eeEEEEeecccccccccCceeeEEEeeeecccccceeeeeeccceeEEEeecccceecccccccccccchhhhhhccccc
Q psy18231 301 ITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEARDS 380 (540)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (540)
......+.
T Consensus 434 ------------------------------------------------------------------------~~~~e~g~ 441 (577)
T KOG0642|consen 434 ------------------------------------------------------------------------GEPKEHGY 441 (577)
T ss_pred ------------------------------------------------------------------------CCccccCC
Confidence 00001111
Q ss_pred EEEEEecC---CeeEeeeCCCeEEEEeCCCCceEEeeeC---------CceEEEEEecCCcEEEeecCCCeEEEEecccc
Q psy18231 381 ITSVHVSD---HEILTASLDCRIRRYDIRTGNLVTDYVG---------EPIVDACFTRDCQCILTCSTDECLRLFDKATG 448 (540)
Q Consensus 381 v~~l~~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~~---------~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~ 448 (540)
-.++.+.. ...++...-+.-.+++++....+..+.. ..+..+.++|.+.+.+++..|+.|+++|..++
T Consensus 442 Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~ 521 (577)
T KOG0642|consen 442 PLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTG 521 (577)
T ss_pred cceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceeccccccc
Confidence 22333322 2222222233333444444444433322 35788899999999999999999999999999
Q ss_pred chhhhhccCcCCcceEEEEecCCCCeEEEeeCCCcEEEEEecCCcceeEEE
Q psy18231 449 ELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLI 499 (540)
Q Consensus 449 ~~~~~~~~~~~~v~~~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~ 499 (540)
+++.....|...++++ ++.|+|.+|++++.|+.+++|.+....++....
T Consensus 522 ~~l~s~~a~~~svtsl--ai~~ng~~l~s~s~d~sv~l~kld~k~~~~es~ 570 (577)
T KOG0642|consen 522 KILHSMVAHKDSVTSL--AIDPNGPYLMSGSHDGSVRLWKLDVKTCVLEST 570 (577)
T ss_pred ccchheeeccceecce--eecCCCceEEeecCCceeehhhccchheeeccc
Confidence 9999999999999988 899999999999999999999987776665554
|
|
| >KOG0302|consensus | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.1e-21 Score=170.03 Aligned_cols=237 Identities=19% Similarity=0.238 Sum_probs=181.4
Q ss_pred ecCCcceeEEEEeeC--CCeEEEeeCCCeEEEEEcCC----------------CceeEeccccCCceeEEEECCC-CCEE
Q psy18231 203 GGHAHEVNDATAACD--SSQIASGASDKSVILWEVTT----------------GQPVRRWREHASKVTCVKFNED-SSVV 263 (540)
Q Consensus 203 ~~h~~~v~~l~~sp~--~~~l~s~s~dg~i~iwd~~~----------------~~~~~~~~~h~~~v~~~~~~~~-~~~l 263 (540)
..|.+.+.-+.-++- ..+.++-+..|.|+||++.. .+++.++.+|...=+.++|||- ...|
T Consensus 148 i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~L 227 (440)
T KOG0302|consen 148 IPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRL 227 (440)
T ss_pred cccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeeccccccccc
Confidence 457777877777764 45667778889999999842 2567888899999999999992 2358
Q ss_pred EEecCCCcEEEEEecCCCCCCcchhhhhHhhhhcCCceeEEEEeecccccccccCceeeEEEeeeecccccceeeeeecc
Q psy18231 264 ISGSQDNTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMST 343 (540)
Q Consensus 264 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (540)
++|..-+.|++|...++....-
T Consensus 228 lsGDc~~~I~lw~~~~g~W~vd---------------------------------------------------------- 249 (440)
T KOG0302|consen 228 LSGDCVKGIHLWEPSTGSWKVD---------------------------------------------------------- 249 (440)
T ss_pred ccCccccceEeeeeccCceeec----------------------------------------------------------
Confidence 8888888999999887652100
Q ss_pred ceeEEEeecccceecccccccccccchhhhhhcccccEEEEEecC---CeeEeeeCCCeEEEEeCCCCc---eE-EeeeC
Q psy18231 344 QHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEARDSITSVHVSD---HEILTASLDCRIRRYDIRTGN---LV-TDYVG 416 (540)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~---~~l~~~~~dg~i~iwd~~~~~---~~-~~~~~ 416 (540)
...+.+|...|..++|+| ..|++|+.||+|+|||++.+. ++ .+.++
T Consensus 250 ---------------------------~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~ 302 (440)
T KOG0302|consen 250 ---------------------------QRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHN 302 (440)
T ss_pred ---------------------------CccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEeeccC
Confidence 115567999999999999 889999999999999999883 22 23345
Q ss_pred CceEEEEEecCCcEEEeecCCCeEEEEeccc---cchhhhhccCcCCcceEEEEecCCC-CeEEEeeCCCcEEEEEecCC
Q psy18231 417 EPIVDACFTRDCQCILTCSTDECLRLFDKAT---GELLEEYKGHKSGDFRIECCLDSKD-SQIFCGSSDGKIYKWQLVDS 492 (540)
Q Consensus 417 ~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~---~~~~~~~~~~~~~v~~~~~~~s~~~-~~l~s~s~dg~i~iwd~~~~ 492 (540)
..|+.+.|+.+..+||+|+.||+++|||++. ++++.+|+-|..+|+++ .|+|.. ..|++++.|.+|.+||+.--
T Consensus 303 sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsi--eW~p~e~s~iaasg~D~QitiWDlsvE 380 (440)
T KOG0302|consen 303 SDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSI--EWHPHEDSVIAASGEDNQITIWDLSVE 380 (440)
T ss_pred CceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEE--EeccccCceEEeccCCCcEEEEEeecc
Confidence 6899999999888999999999999999975 56889999999999999 688754 45888999999999998532
Q ss_pred cc----------------eeEEEecccceeeeEEEEcCCC-cEEEeec-CCe
Q psy18231 493 SQ----------------ISTLIHSVGKAVVNSLCSHPTR-KHIMSAC-GNN 526 (540)
Q Consensus 493 ~~----------------~~~~~~~~~~~~v~~l~~s~d~-~~l~s~~-d~~ 526 (540)
.- .+-+-.......+..+.|++.- .+|++.+ ||-
T Consensus 381 ~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dGf 432 (440)
T KOG0302|consen 381 ADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDGF 432 (440)
T ss_pred CChhhhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEecccce
Confidence 11 1111110123468889998763 4666666 773
|
|
| >KOG0644|consensus | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.9e-23 Score=196.05 Aligned_cols=282 Identities=20% Similarity=0.321 Sum_probs=219.9
Q ss_pred ceeeeeecCeEEEEeCCCCCEEEEeeCCCcEEEEcCCCCeeEEEeecCCcceeEEEEeeCCCeEEEeeCCCeEEEEEcCC
Q psy18231 158 NRELFVLSGLMHTRFPVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTT 237 (540)
Q Consensus 158 ~~~~~h~~~v~~v~~spdg~~lat~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~ 237 (540)
.+..+|..+|.|+.|...|.++++|+.|..++||..+++.++....||.+.|+.++.+.+..+++++|.|..|++|.+.+
T Consensus 184 krLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~ 263 (1113)
T KOG0644|consen 184 KRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPD 263 (1113)
T ss_pred HHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEecCC
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceeEeccccCCceeEEEECCCCCEEEEecCCCcEEEEEecCCCCCCcchhhhhHhhhhcCCceeEEEEeeccccccccc
Q psy18231 238 GQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHLSN 317 (540)
Q Consensus 238 ~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (540)
+.++..+.+|++.|++++|+|-. +.+.||++++||.+-.. ...
T Consensus 264 ~~pvsvLrghtgavtaiafsP~~----sss~dgt~~~wd~r~~~---~~y------------------------------ 306 (1113)
T KOG0644|consen 264 GAPVSVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDARLEP---RIY------------------------------ 306 (1113)
T ss_pred CchHHHHhccccceeeeccCccc----cCCCCCceEeccccccc---ccc------------------------------
Confidence 99999999999999999999954 77889999999987211 000
Q ss_pred CceeeEEEeeeecccccceeeeeeccceeEEEeecccceecccccccccccchhhhhhcccccEEEEEecC--CeeEeee
Q psy18231 318 GLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEARDSITSVHVSD--HEILTAS 395 (540)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~--~~l~~~~ 395 (540)
.+ .+. . ......+.++.+.. ..+++++
T Consensus 307 --------~p----------------------------------rp~--------~-~~~~~~~~s~~~~~~~~~f~Tgs 335 (1113)
T KOG0644|consen 307 --------VP----------------------------------RPL--------K-FTEKDLVDSILFENNGDRFLTGS 335 (1113)
T ss_pred --------CC----------------------------------CCC--------C-cccccceeeeecccccccccccc
Confidence 00 000 0 00112333444433 6688899
Q ss_pred CCCeEEEEeCCCCceEEeeeCCceEEEEEecC-CcEEEeecCCCeEEEEeccccchhhhhccCcCCcceEEEEecCCCCe
Q psy18231 396 LDCRIRRYDIRTGNLVTDYVGEPIVDACFTRD-CQCILTCSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQ 474 (540)
Q Consensus 396 ~dg~i~iwd~~~~~~~~~~~~~~i~~~~~sp~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~s~~~~~ 474 (540)
.|+.-..|.+...... ...+.-+.++.+ ..+.+++-.+-.+.+|++.+|..++.+.+|...++.+ .++|-+..
T Consensus 336 ~d~ea~n~e~~~l~~~----~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvL--d~Hpfn~r 409 (1113)
T KOG0644|consen 336 RDGEARNHEFEQLAWR----SNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVL--DVHPFNPR 409 (1113)
T ss_pred CCcccccchhhHhhhh----ccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhcccccceeee--eecCCCcH
Confidence 9988888866522110 000111111111 2456666678889999999999999999999999888 67886655
Q ss_pred -EEEeeCCCcEEEEEecCCcceeEEEecccceeeeEEEEcCCCcEEEeec-CCeeEEEEcccc
Q psy18231 475 -IFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC-GNNVKLWTAEED 535 (540)
Q Consensus 475 -l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~-d~~i~iw~~~~~ 535 (540)
..+++.||...|||+-.|.+++.... + .+.+....||+||..++... -|.+.|.....+
T Consensus 410 i~msag~dgst~iwdi~eg~pik~y~~-g-h~kl~d~kFSqdgts~~lsd~hgql~i~g~gqs 470 (1113)
T KOG0644|consen 410 IAMSAGYDGSTIIWDIWEGIPIKHYFI-G-HGKLVDGKFSQDGTSIALSDDHGQLYILGTGQS 470 (1113)
T ss_pred hhhhccCCCceEeeecccCCcceeeec-c-cceeeccccCCCCceEecCCCCCceEEeccCCC
Confidence 55899999999999999999888773 4 45677889999999999888 788888776443
|
|
| >KOG1188|consensus | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.2e-21 Score=166.08 Aligned_cols=270 Identities=17% Similarity=0.298 Sum_probs=200.5
Q ss_pred CEEEEeeCCCcEEEEcCCCCeeEEEeecCCcceeEEEEee--CCCeEEEeeCCCeEEEEEcCCCceeEe--ccccC-Cce
Q psy18231 177 SYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAAC--DSSQIASGASDKSVILWEVTTGQPVRR--WREHA-SKV 251 (540)
Q Consensus 177 ~~lat~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp--~~~~l~s~s~dg~i~iwd~~~~~~~~~--~~~h~-~~v 251 (540)
..+|++-..|.|++||..+++.+..++++...+..+.|.. ....+.+|+.||+|++||+++...... ...+. .+.
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f 120 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPF 120 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcc
Confidence 4688888899999999999999999999999999999987 456789999999999999998755443 33444 456
Q ss_pred eEEEECCCCCEEEEecC----CCcEEEEEecCCCCCCcchhhhhHhhhhcCCceeEEEEeecccccccccCceeeEEEee
Q psy18231 252 TCVKFNEDSSVVISGSQ----DNTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAF 327 (540)
Q Consensus 252 ~~~~~~~~~~~l~s~~~----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (540)
.+++..-.++.+++|.. |-.|.+||++..+..
T Consensus 121 ~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~-------------------------------------------- 156 (376)
T KOG1188|consen 121 ICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQL-------------------------------------------- 156 (376)
T ss_pred eEeeccCcCCeEEeccccccCceEEEEEEeccccch--------------------------------------------
Confidence 67777667778887753 567999999987621
Q ss_pred eecccccceeeeeeccceeEEEeecccceecccccccccccchhhhhhcccccEEEEEecC---CeeEeeeCCCeEEEEe
Q psy18231 328 RCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEARDSITSVHVSD---HEILTASLDCRIRRYD 404 (540)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~---~~l~~~~~dg~i~iwd 404 (540)
.-.-...|.+.|+++.|+| ++|++|+.||-|.+||
T Consensus 157 ------------------------------------------l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD 194 (376)
T KOG1188|consen 157 ------------------------------------------LRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFD 194 (376)
T ss_pred ------------------------------------------hhhhhhhccCcceeEEecCCCCCeEEeecccceEEeee
Confidence 0114467999999999998 8999999999999999
Q ss_pred CCCCce----EEeee-CCceEEEEEecCC-cEEEeecCCCeEEEEeccccchhhhhccCc----------CCcceEEEEe
Q psy18231 405 IRTGNL----VTDYV-GEPIVDACFTRDC-QCILTCSTDECLRLFDKATGELLEEYKGHK----------SGDFRIECCL 468 (540)
Q Consensus 405 ~~~~~~----~~~~~-~~~i~~~~~sp~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~----------~~v~~~~~~~ 468 (540)
++.... +..+. +..|.++.|..++ +.+.+-+..++..+|+++.+.....+.... ..-+.+....
T Consensus 195 ~~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~~~~ 274 (376)
T KOG1188|consen 195 TKKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVINEHS 274 (376)
T ss_pred cCCCcchhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhheeeccc
Confidence 986532 33333 3569999998876 458888899999999999887654443221 1112232122
Q ss_pred cCCCCeEEEeeC-CCcEEEEEecC---C---cceeEEEecccceeeeEEEEcCCCcEEEeec-CCeeEEEEcc
Q psy18231 469 DSKDSQIFCGSS-DGKIYKWQLVD---S---SQISTLIHSVGKAVVNSLCSHPTRKHIMSAC-GNNVKLWTAE 533 (540)
Q Consensus 469 s~~~~~l~s~s~-dg~i~iwd~~~---~---~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~-d~~i~iw~~~ 533 (540)
..++..++.++. -|...++-+.. + +.+..+. .+|...|+++.|...+.++.||+ ||.+.+|..+
T Consensus 275 ~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~-g~~~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk~~ 346 (376)
T KOG1188|consen 275 PGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQ-GGHEEIVRDILFDVKNDVLYTGGEDGLLQAWKVE 346 (376)
T ss_pred CCCcceEEEeccccCceeEEEeeecccccccCcccccc-CCcHHHHHHHhhhcccceeeccCCCceEEEEecC
Confidence 234445555444 56666665442 2 3344444 25888899999999999999999 9999999963
|
|
| >KOG0270|consensus | Back alignment and domain information |
|---|
Probab=99.89 E-value=7.5e-22 Score=174.66 Aligned_cols=273 Identities=15% Similarity=0.224 Sum_probs=196.0
Q ss_pred EEeCCCCCEEEEeeCC---C--cEEEEcCCCCeeEEEeecCC----cceeEEEEee-------CCCeEEEeeCCCeEEEE
Q psy18231 170 TRFPVDGSYCLTCGSD---K--KIKLWNPYRNLLLKTYGGHA----HEVNDATAAC-------DSSQIASGASDKSVILW 233 (540)
Q Consensus 170 v~~spdg~~lat~~~d---g--~i~iwd~~~~~~~~~~~~h~----~~v~~l~~sp-------~~~~l~s~s~dg~i~iw 233 (540)
+..-|+..+|+++-.+ . .|+||+-.... -+..|. ..-.|++|.. .|+++|.|+.|..|.||
T Consensus 131 ~~V~psDnlIl~ar~eddvs~LEvYVyn~~e~n---lYvHHD~ilpafPLC~ewld~~~~~~~~gNyvAiGtmdp~IeIW 207 (463)
T KOG0270|consen 131 EQVKPSDNLILCARNEDDVSYLEVYVYNEEEEN---LYVHHDFILPAFPLCIEWLDHGSKSGGAGNYVAIGTMDPEIEIW 207 (463)
T ss_pred ceeccCCcEEEEeeccCCceEEEEEEEcCCCcc---eeEecceeccCcchhhhhhhcCCCCCCCcceEEEeccCceeEEe
Confidence 3455666666665432 2 35556643311 122232 2235666643 47899999999999999
Q ss_pred EcCCCce---e------------------EeccccCCceeEEEECCC-CCEEEEecCCCcEEEEEecCCCCCCcchhhhh
Q psy18231 234 EVTTGQP---V------------------RRWREHASKVTCVKFNED-SSVVISGSQDNTVMMWDVKSRSHHPIQVRCLN 291 (540)
Q Consensus 234 d~~~~~~---~------------------~~~~~h~~~v~~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 291 (540)
|+.-... . ..-.+|++.|..++|+.. .+.|++||.|.+|++||+.++++
T Consensus 208 DLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p--------- 278 (463)
T KOG0270|consen 208 DLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTGKP--------- 278 (463)
T ss_pred ccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEEEEcCCCCc---------
Confidence 9853210 0 112368999999999874 46899999999999999999883
Q ss_pred HhhhhcCCceeEEEEeecccccccccCceeeEEEeeeecccccceeeeeeccceeEEEeecccceecccccccccccchh
Q psy18231 292 EALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCF 371 (540)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (540)
.
T Consensus 279 -------------------------------------------------------------------------------~ 279 (463)
T KOG0270|consen 279 -------------------------------------------------------------------------------K 279 (463)
T ss_pred -------------------------------------------------------------------------------c
Confidence 2
Q ss_pred hhhhcccccEEEEEecC---CeeEeeeCCCeEEEEeCCCCce-EEeee-CCceEEEEEecCC-cEEEeecCCCeEEEEec
Q psy18231 372 QALKEARDSITSVHVSD---HEILTASLDCRIRRYDIRTGNL-VTDYV-GEPIVDACFTRDC-QCILTCSTDECLRLFDK 445 (540)
Q Consensus 372 ~~~~~~~~~v~~l~~~~---~~l~~~~~dg~i~iwd~~~~~~-~~~~~-~~~i~~~~~sp~~-~~l~~~~~dg~i~i~d~ 445 (540)
..+..|...|.++.|+| ..|++|+.|+++.+.|.+.... -..+. .+.|-.++|.|.. ..+++++.||+|+-+|+
T Consensus 280 ~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~ 359 (463)
T KOG0270|consen 280 SSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDI 359 (463)
T ss_pred eehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEeccceEEEEecCCCceeEEEecCCceEEeeec
Confidence 25567899999999998 8899999999999999995322 22222 3678999999954 56778889999999999
Q ss_pred ccc-chhhhhccCcCCcceEEEEecCC-CCeEEEeeCCCcEEEEEecCCcceeEEEecccceeeeEEEEcCCCcE-EEee
Q psy18231 446 ATG-ELLEEYKGHKSGDFRIECCLDSK-DSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKH-IMSA 522 (540)
Q Consensus 446 ~~~-~~~~~~~~~~~~v~~~~~~~s~~-~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~-l~s~ 522 (540)
++. +++.+++.|.++|.++ ++++. -.++++++.|+.|++|++..............-+...|.++.|+-.+ |+.|
T Consensus 360 R~~~~~vwt~~AHd~~ISgl--~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~~~~~~~rl~c~~~~~~~a~~la~G 437 (463)
T KOG0270|consen 360 RNPGKPVWTLKAHDDEISGL--SVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKEHSFKLGRLHCFALDPDVAFTLAFG 437 (463)
T ss_pred CCCCCceeEEEeccCCcceE--EecCCCCcceeeccccceEEEEeecCCCCcccccccccccceeecccCCCcceEEEec
Confidence 975 8999999999999999 45543 34799999999999999876544332221122344677788887654 5556
Q ss_pred c-CCeeEEEEcccc
Q psy18231 523 C-GNNVKLWTAEED 535 (540)
Q Consensus 523 ~-d~~i~iw~~~~~ 535 (540)
+ .+.++|||+.+.
T Consensus 438 G~k~~~~vwd~~~~ 451 (463)
T KOG0270|consen 438 GEKAVLRVWDIFTN 451 (463)
T ss_pred CccceEEEeecccC
Confidence 6 778999998764
|
|
| >KOG1445|consensus | Back alignment and domain information |
|---|
Probab=99.89 E-value=4.2e-21 Score=177.10 Aligned_cols=161 Identities=16% Similarity=0.168 Sum_probs=118.8
Q ss_pred hhhcccccEEEEEecC---CeeEeeeCCCeEEEEeCCCCceEEeeeC--CceEEEEEecCCcEEEeecCCCeEEEEeccc
Q psy18231 373 ALKEARDSITSVHVSD---HEILTASLDCRIRRYDIRTGNLVTDYVG--EPIVDACFTRDCQCILTCSTDECLRLFDKAT 447 (540)
Q Consensus 373 ~~~~~~~~v~~l~~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~~--~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~ 447 (540)
.+..|...|+++.|+| +.|++++.|-+|++||+.+++....+.+ ..|..++|||+|+.+++.+.||+|++|+-++
T Consensus 672 ~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs 751 (1012)
T KOG1445|consen 672 ILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRS 751 (1012)
T ss_pred eeecccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhheeccCcCceeEEEECCCCcceeeeecCceEEEeCCCC
Confidence 6778999999999999 8999999999999999999998888877 5799999999999999999999999999887
Q ss_pred cc-hhhhhccCcCCcceEEEEecCCCCeEEEeeCC----CcEEEEEecCC--cceeEEEecccceeeeEEEEcCCCcEEE
Q psy18231 448 GE-LLEEYKGHKSGDFRIECCLDSKDSQIFCGSSD----GKIYKWQLVDS--SQISTLIHSVGKAVVNSLCSHPTRKHIM 520 (540)
Q Consensus 448 ~~-~~~~~~~~~~~v~~~~~~~s~~~~~l~s~s~d----g~i~iwd~~~~--~~~~~~~~~~~~~~v~~l~~s~d~~~l~ 520 (540)
++ .+++-++..+ -...++.|.-||+++++.+.| ..|.+||.++- .++.+... .-.-.+.--.+.+|...|+
T Consensus 752 ~e~pv~Eg~gpvg-tRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l~~~pl~t~~l-Dvaps~LvP~YD~Ds~~lf 829 (1012)
T KOG1445|consen 752 REQPVYEGKGPVG-TRGARILWACDGRIVIVVGFDKSSERQVQMYDAQTLDLRPLYTQVL-DVAPSPLVPHYDYDSNVLF 829 (1012)
T ss_pred CCCccccCCCCcc-CcceeEEEEecCcEEEEecccccchhhhhhhhhhhccCCcceeeee-cccCccccccccCCCceEE
Confidence 64 3444333332 223444788899998887755 46888987653 34443321 1111122223456665554
Q ss_pred -eec-CCeeEEEEcccc
Q psy18231 521 -SAC-GNNVKLWTAEED 535 (540)
Q Consensus 521 -s~~-d~~i~iw~~~~~ 535 (540)
+|- |..|.+|++-.+
T Consensus 830 ltGKGD~~v~~yEv~~e 846 (1012)
T KOG1445|consen 830 LTGKGDRFVNMYEVIYE 846 (1012)
T ss_pred EecCCCceEEEEEecCC
Confidence 555 999999988543
|
|
| >KOG4328|consensus | Back alignment and domain information |
|---|
Probab=99.89 E-value=6.7e-22 Score=175.55 Aligned_cols=267 Identities=18% Similarity=0.171 Sum_probs=206.5
Q ss_pred hhhhcccccceeeeecccccc-------eeeeeecCeEEEEeCC-CCCEEEEeeCCCcEEEEcCCCCee--EEEeecCCc
Q psy18231 138 RILYELPKEWSIRVYRPLTVN-------RELFVLSGLMHTRFPV-DGSYCLTCGSDKKIKLWNPYRNLL--LKTYGGHAH 207 (540)
Q Consensus 138 ~~~~~~~~~~~i~~~~~~~~~-------~~~~h~~~v~~v~~sp-dg~~lat~~~dg~i~iwd~~~~~~--~~~~~~h~~ 207 (540)
.+++.+.+.+.|-+|+..... .-..|..+|+++.|+| +...+++.|.||+|++-|++++.. +.++.....
T Consensus 201 ~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~~~i~e~v~s~~~d~~ 280 (498)
T KOG4328|consen 201 KLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQDFEGNISEEVLSLDTDNI 280 (498)
T ss_pred eEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCceeeeeeecchhhHHHhhcCccce
Confidence 566788999999999984221 1234889999999999 456788999999999999987643 333433556
Q ss_pred ceeEEEEeeCCCeEEEeeCCCeEEEEEcCCCce-eEeccccCCceeEEEECC-CCCEEEEecCCCcEEEEEecCCCCCCc
Q psy18231 208 EVNDATAACDSSQIASGASDKSVILWEVTTGQP-VRRWREHASKVTCVKFNE-DSSVVISGSQDNTVMMWDVKSRSHHPI 285 (540)
Q Consensus 208 ~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~-~~~~~~h~~~v~~~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~ 285 (540)
.+.++.|+.+...++.+..=|...+||++++.. ...+.-|...|..++++| ...+|+|+|.|++.+|||++....+..
T Consensus 281 ~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~s 360 (498)
T KOG4328|consen 281 WFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKAS 360 (498)
T ss_pred eeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCCC
Confidence 678888988888888888888999999998754 556778999999999999 557899999999999999987652111
Q ss_pred chhhhhHhhhhcCCceeEEEEeecccccccccCceeeEEEeeeecccccceeeeeeccceeEEEeecccceecccccccc
Q psy18231 286 QVRCLNEALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPIS 365 (540)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 365 (540)
T Consensus 361 -------------------------------------------------------------------------------- 360 (498)
T KOG4328|consen 361 -------------------------------------------------------------------------------- 360 (498)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccchhhhhhcccccEEEEEecC--CeeEeeeCCCeEEEEeCC----CCceEEeeeC-------CceEEEEEecCCcEEE
Q psy18231 366 IHNSCFQALKEARDSITSVHVSD--HEILTASLDCRIRRYDIR----TGNLVTDYVG-------EPIVDACFTRDCQCIL 432 (540)
Q Consensus 366 ~~~~~~~~~~~~~~~v~~l~~~~--~~l~~~~~dg~i~iwd~~----~~~~~~~~~~-------~~i~~~~~sp~~~~l~ 432 (540)
++.....|...|.+..|+| ..|++.+.|..|+|||.. .-.+...+.. -......|.|+.++++
T Consensus 361 ----p~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~ 436 (498)
T KOG4328|consen 361 ----PFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTIPHNNRTGRWLTPFKAAWDPDYNLIV 436 (498)
T ss_pred ----cceecccccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCccceeeccCcccccccchhheeCCCccEEE
Confidence 0113457899999999999 669999999999999983 3334444432 1355678999999999
Q ss_pred eecCCCeEEEEeccccchhhhhccCcC-CcceEEEEecCCCC-eEEEeeCCCcEEEEEe
Q psy18231 433 TCSTDECLRLFDKATGELLEEYKGHKS-GDFRIECCLDSKDS-QIFCGSSDGKIYKWQL 489 (540)
Q Consensus 433 ~~~~dg~i~i~d~~~~~~~~~~~~~~~-~v~~~~~~~s~~~~-~l~s~s~dg~i~iwd~ 489 (540)
+|..-..|-|+|-..++.+..+..... .|.++. .|+|-+. +++-++..|.|+||--
T Consensus 437 vg~~~r~IDv~~~~~~q~v~el~~P~~~tI~~vn-~~HP~~~~~~aG~~s~Gki~vft~ 494 (498)
T KOG4328|consen 437 VGRYPRPIDVFDGNGGQMVCELHDPESSTIPSVN-EFHPMRDTLAAGGNSSGKIYVFTN 494 (498)
T ss_pred EeccCcceeEEcCCCCEEeeeccCccccccccce-eecccccceeccCCccceEEEEec
Confidence 999999999999998887877654443 455554 7999888 4555567788998863
|
|
| >KOG1310|consensus | Back alignment and domain information |
|---|
Probab=99.88 E-value=7e-21 Score=172.81 Aligned_cols=123 Identities=20% Similarity=0.378 Sum_probs=109.6
Q ss_pred eeeeeecCeEEEEeCCCCCEEEEeeCCCcEEEEcCCCCeeEEEe-ecCCcceeEEEEee--CCCeEEEeeCCCeEEEEEc
Q psy18231 159 RELFVLSGLMHTRFPVDGSYCLTCGSDKKIKLWNPYRNLLLKTY-GGHAHEVNDATAAC--DSSQIASGASDKSVILWEV 235 (540)
Q Consensus 159 ~~~~h~~~v~~v~~spdg~~lat~~~dg~i~iwd~~~~~~~~~~-~~h~~~v~~l~~sp--~~~~l~s~s~dg~i~iwd~ 235 (540)
...+|++.|+|+.|+.||.+|++|+.|-.+.|||....++++.+ .+|...|.++.|-| +.+.+++|..|..|+++|+
T Consensus 45 eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfdl 124 (758)
T KOG1310|consen 45 ELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFDL 124 (758)
T ss_pred hhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEEec
Confidence 45689999999999999999999999999999999988888777 68999999999999 5678999999999999999
Q ss_pred CCC----------ceeEeccccCCceeEEEECCCC-CEEEEecCCCcEEEEEecCCC
Q psy18231 236 TTG----------QPVRRWREHASKVTCVKFNEDS-SVVISGSQDNTVMMWDVKSRS 281 (540)
Q Consensus 236 ~~~----------~~~~~~~~h~~~v~~~~~~~~~-~~l~s~~~dg~i~iwd~~~~~ 281 (540)
... .....+..|...|..++-.|++ +.+.++++||+|+-+|++...
T Consensus 125 ~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph 181 (758)
T KOG1310|consen 125 DSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPH 181 (758)
T ss_pred ccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCc
Confidence 752 3445567899999999999988 789999999999999998754
|
|
| >KOG1334|consensus | Back alignment and domain information |
|---|
Probab=99.88 E-value=5.6e-22 Score=177.40 Aligned_cols=290 Identities=21% Similarity=0.322 Sum_probs=226.5
Q ss_pred eeeeeecCeEEEEeCCCCCEEEEeeCCCcEEEEcCCCCeeEEEe-ecCCcceeEEEEee--CCCeEEEeeCCCeEEEEEc
Q psy18231 159 RELFVLSGLMHTRFPVDGSYCLTCGSDKKIKLWNPYRNLLLKTY-GGHAHEVNDATAAC--DSSQIASGASDKSVILWEV 235 (540)
Q Consensus 159 ~~~~h~~~v~~v~~spdg~~lat~~~dg~i~iwd~~~~~~~~~~-~~h~~~v~~l~~sp--~~~~l~s~s~dg~i~iwd~ 235 (540)
++-.|.+.|..|.|+..|..|++|+.|..|.+||+.++.....+ .+|...|....|-| +..-+++++.||.|++=.+
T Consensus 137 kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i 216 (559)
T KOG1334|consen 137 KLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEI 216 (559)
T ss_pred cccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceeeeee
Confidence 45579999999999999999999999999999999999887776 57999999999988 4567999999999999876
Q ss_pred CCCce---eEeccccCCceeEEEECCCC-CEEEEecCCCcEEEEEecCCCCCCcchhhhhHhhhhcCCceeEEEEeeccc
Q psy18231 236 TTGQP---VRRWREHASKVTCVKFNEDS-SVVISGSQDNTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKST 311 (540)
Q Consensus 236 ~~~~~---~~~~~~h~~~v~~~~~~~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (540)
..... ...+..|.++|..++.-|+. ..|.+++.|+.+.-+|++.........
T Consensus 217 ~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~------------------------ 272 (559)
T KOG1334|consen 217 LETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFV------------------------ 272 (559)
T ss_pred ccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceee------------------------
Confidence 54322 23466799999999999954 678999999999999998876311110
Q ss_pred ccccccCceeeEEEeeeecccccceeeeeeccceeEEEeecccceecccccccccccchhhhhhcccccEEEEEecC---
Q psy18231 312 KNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEARDSITSVHVSD--- 388 (540)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~--- 388 (540)
|. ..-....-...+++.+|
T Consensus 273 -----------------cr-----------------------------------------~~~~~~~v~L~~Ia~~P~nt 294 (559)
T KOG1334|consen 273 -----------------CR-----------------------------------------EADEKERVGLYTIAVDPRNT 294 (559)
T ss_pred -----------------ee-----------------------------------------ccCCccceeeeeEecCCCCc
Confidence 00 00000012456778877
Q ss_pred CeeEeeeCCCeEEEEeCCCCce------EEeee--------CCceEEEEEecCCcEEEeecCCCeEEEEecc--cc----
Q psy18231 389 HEILTASLDCRIRRYDIRTGNL------VTDYV--------GEPIVDACFTRDCQCILTCSTDECLRLFDKA--TG---- 448 (540)
Q Consensus 389 ~~l~~~~~dg~i~iwd~~~~~~------~~~~~--------~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~--~~---- 448 (540)
..+++++.|..+++||.+.-.. +..+. .-.|++++|+.++.-|.++-.|-.|+++.-. .|
T Consensus 295 ~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~ 374 (559)
T KOG1334|consen 295 NEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEPD 374 (559)
T ss_pred cccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccCCCCC
Confidence 6899999999999999874321 22221 1369999999888888888888999999532 22
Q ss_pred ------chh-hhhccCcCCc--ceEEEEecCCCCeEEEeeCCCcEEEEEecCCcceeEEEecccceeeeEEEEcCCCcEE
Q psy18231 449 ------ELL-EEYKGHKSGD--FRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHI 519 (540)
Q Consensus 449 ------~~~-~~~~~~~~~v--~~~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l 519 (540)
..+ +.+++|.+.- ..+. -|.|...|+++||.-|.|.||+-.+++.+..++ +-...|+||.=+|--..|
T Consensus 375 ~~s~~~~~~k~vYKGHrN~~TVKgVN-FfGPrsEyVvSGSDCGhIFiW~K~t~eii~~Me--gDr~VVNCLEpHP~~PvL 451 (559)
T KOG1334|consen 375 PSSPREQYVKRVYKGHRNSRTVKGVN-FFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFME--GDRHVVNCLEPHPHLPVL 451 (559)
T ss_pred CCcchhhccchhhcccccccccceee-eccCccceEEecCccceEEEEecchhHHHHHhh--cccceEeccCCCCCCchh
Confidence 223 3489997654 3444 378899999999999999999999999999988 555589999999999999
Q ss_pred Eeec-CCeeEEEEcc
Q psy18231 520 MSAC-GNNVKLWTAE 533 (540)
Q Consensus 520 ~s~~-d~~i~iw~~~ 533 (540)
|+++ |..||||...
T Consensus 452 AsSGid~DVKIWTP~ 466 (559)
T KOG1334|consen 452 ASSGIDHDVKIWTPL 466 (559)
T ss_pred hccCCccceeeecCC
Confidence 9999 9999999873
|
|
| >KOG1009|consensus | Back alignment and domain information |
|---|
Probab=99.88 E-value=1e-20 Score=165.64 Aligned_cols=294 Identities=19% Similarity=0.166 Sum_probs=195.0
Q ss_pred hhhhhcccccceeeeecccccc------------eeeeeecCeEEEEeCCCCCEEEEeeCCCcEEEEcCC--------C-
Q psy18231 137 TRILYELPKEWSIRVYRPLTVN------------RELFVLSGLMHTRFPVDGSYCLTCGSDKKIKLWNPY--------R- 195 (540)
Q Consensus 137 ~~~~~~~~~~~~i~~~~~~~~~------------~~~~h~~~v~~v~~spdg~~lat~~~dg~i~iwd~~--------~- 195 (540)
...+++++.|..||+|...... ....|..+|+++.|+|+|..||+|+.+|.|.+|... +
T Consensus 26 ~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e 105 (434)
T KOG1009|consen 26 LNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTE 105 (434)
T ss_pred ccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCccccch
Confidence 3377888999999999876532 123499999999999999999999999999999755 2
Q ss_pred -------CeeEEEeecCCcceeEEEEeeCCCeEEEeeCCCeEEEEEcCCCceeEeccccCCceeEEEECCCCCEEEEecC
Q psy18231 196 -------NLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQ 268 (540)
Q Consensus 196 -------~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~ 268 (540)
....+.+.+|...|+.++|+|++.++++++.|+++++||+..|+....+.+|...|..++|.|-++++++-+.
T Consensus 106 ~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgvawDpl~qyv~s~s~ 185 (434)
T KOG1009|consen 106 ADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGVAWDPLNQYVASKSS 185 (434)
T ss_pred hhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeeccccccccceeecchhhhhhhhhcc
Confidence 2345667889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcEEEEEecCCCCCCcchhhhhHhhhhcCCceeEEEEeecccccccccCceeeEEEeeeecccccceeeeeeccceeEE
Q psy18231 269 DNTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMV 348 (540)
Q Consensus 269 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (540)
|...+.+.+............ .+. ..............+.-..+........++.++.+.
T Consensus 186 dr~~~~~~~~~~~~~~~~~~~----------------~m~----~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~ll 245 (434)
T KOG1009|consen 186 DRHPEGFSAKLKQVIKRHGLD----------------IMP----AKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLL 245 (434)
T ss_pred Ccccceeeeeeeeeeeeeeee----------------Eee----ecccCCCCcceeeeeecCchhhhhhhcccCCCCcEE
Confidence 987777776554321100000 000 000001111122233334444444444444444443
Q ss_pred Eeec-----ccceecccccc--cccccchhhhhhcccccEEEEEecC-------------------CeeEeeeCCCeEEE
Q psy18231 349 LLDF-----LGSTQIGDVTP--ISIHNSCFQALKEARDSITSVHVSD-------------------HEILTASLDCRIRR 402 (540)
Q Consensus 349 ~~~~-----~~~~~~~~~~~--~~~~~~~~~~~~~~~~~v~~l~~~~-------------------~~l~~~~~dg~i~i 402 (540)
+... .+......... -.....+...+.....+...+.++| +.++.......+.+
T Consensus 246 vtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt~~svyv 325 (434)
T KOG1009|consen 246 VTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIATKNSVYV 325 (434)
T ss_pred EcccceeeeCCceeeceeEeeccccccCceeecCCCCcceEEEEeeeeEEEeccccccccccccccceEEEEeecceEEE
Confidence 3211 11110000000 0001111122222333333333332 23344444567999
Q ss_pred EeCCCCceEEeee---CCceEEEEEecCCcEEEeecCCCeEEEEeccccch
Q psy18231 403 YDIRTGNLVTDYV---GEPIVDACFTRDCQCILTCSTDECLRLFDKATGEL 450 (540)
Q Consensus 403 wd~~~~~~~~~~~---~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~ 450 (540)
||.++..++.... -..|+.++|++||..|+..+.||...+.-++..+.
T Consensus 326 ydtq~~~P~~~v~nihy~~iTDiaws~dg~~l~vSS~DGyCS~vtfe~~el 376 (434)
T KOG1009|consen 326 YDTQTLEPLAVVDNIHYSAITDIAWSDDGSVLLVSSTDGFCSLVTFEPWEL 376 (434)
T ss_pred eccccccceEEEeeeeeeeecceeecCCCcEEEEeccCCceEEEEEcchhc
Confidence 9999877765544 47999999999999999999999888877665543
|
|
| >TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.5e-22 Score=186.98 Aligned_cols=113 Identities=23% Similarity=0.343 Sum_probs=103.4
Q ss_pred ceecCCceEEeccCCCCCHHHHHHHHHcCCCEEEeeeeecccccccchhhccccccCCCCCCEEEEEecCChhHHHHHHH
Q psy18231 11 STLLKNLKHCDSTLWTSKLNFRQLVRSHNVDLCFTPMIIADSFIKSSKARNNEFSTSPEDTPLVVQFASNNHDDFVRATQ 90 (540)
Q Consensus 11 ~~~~~~~~~~ap~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~ 90 (540)
++.++.+++||||+|+||+|||++||++|++++||||++++.+++..+.....+...+++.|+++|++|++|++++++++
T Consensus 3 ~~~~~~~l~lAPm~~~t~~~fR~l~~~~g~~~~~temi~~~~l~~~~~~~~~~~~~~~~~~p~i~ql~g~~~~~~~~aa~ 82 (319)
T TIGR00737 3 NIQLKSRVVLAPMAGVTDSPFRRLVAEYGAGLTVCEMVSSEAIVYDSQRTMRLLDIAEDETPISVQLFGSDPDTMAEAAK 82 (319)
T ss_pred CccCCCCEEecCCCCCCcHHHHHHHHHHCCCEEEECCEEEhhhhcCCHHHHHHhhcCCccceEEEEEeCCCHHHHHHHHH
Confidence 45678899999999999999999999999999999999999998888777777778899999999999999999999999
Q ss_pred HhcC-CCCeEeeccCCCceEEEeccccceecccc
Q psy18231 91 YVAP-HCNGVDLNCGCPQRWAIKEGYGCALLSKQ 123 (540)
Q Consensus 91 ~~~~-~~~~id~~~gc~~~~~~~~g~g~~l~~~~ 123 (540)
.+.+ ++|+|++|+|||..+....+.|+.|+.++
T Consensus 83 ~~~~~G~d~IelN~gcP~~~~~~~~~Gs~l~~~~ 116 (319)
T TIGR00737 83 INEELGADIIDINMGCPVPKITKKGAGSALLRDP 116 (319)
T ss_pred HHHhCCCCEEEEECCCCHHHhcCCCccchHhCCH
Confidence 8776 89999999999988888888899998874
|
Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. |
| >KOG0642|consensus | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.7e-21 Score=176.26 Aligned_cols=252 Identities=16% Similarity=0.216 Sum_probs=188.7
Q ss_pred EEeecCCcceeEEEEeeCCCeEEEeeCCCeEEEEEcCC--------CceeEeccccCCceeEEEECCCCCEEEEecCCCc
Q psy18231 200 KTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTT--------GQPVRRWREHASKVTCVKFNEDSSVVISGSQDNT 271 (540)
Q Consensus 200 ~~~~~h~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~--------~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~ 271 (540)
.++..|...|..++|.|....|++++.||++++|+++. -+++.++.+|.++|.|++..+++.++++|+.||+
T Consensus 288 ~tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~ 367 (577)
T KOG0642|consen 288 FTLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGT 367 (577)
T ss_pred eeeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCce
Confidence 36677999999999999999999999999999999932 2567889999999999999999999999999999
Q ss_pred EEEEEecCCCCCCcchhhhhHhhhhcCCceeEEEEeecccccccccCceeeEEEeeeecccccceeeeeeccceeEEEee
Q psy18231 272 VMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLD 351 (540)
Q Consensus 272 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (540)
|+.|++.... .+...
T Consensus 368 I~~w~~p~n~-dp~ds---------------------------------------------------------------- 382 (577)
T KOG0642|consen 368 IRCWNLPPNQ-DPDDS---------------------------------------------------------------- 382 (577)
T ss_pred eeeeccCCCC-Ccccc----------------------------------------------------------------
Confidence 9999887322 11100
Q ss_pred cccceecccccccccccchhhhhhcccccEEEEEecC--CeeEeeeCCCeEEEEeCCCCceEEeeeC----CceEEEEEe
Q psy18231 352 FLGSTQIGDVTPISIHNSCFQALKEARDSITSVHVSD--HEILTASLDCRIRRYDIRTGNLVTDYVG----EPIVDACFT 425 (540)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~----~~i~~~~~s 425 (540)
.........+.+|.+.|+.+++++ ..|++++.||++++|+.....+ ..+.. ..-.++.+-
T Consensus 383 -------------~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~Plsvd~~ 448 (577)
T KOG0642|consen 383 -------------YDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYPLSVDRT 448 (577)
T ss_pred -------------cCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCc-cccCCccccCCcceEeec
Confidence 000001226789999999999998 8899999999999999876665 22321 233444443
Q ss_pred cCC-cEEEeecCCCeEEEEeccccchhhhhccCc-------CCcceEEEEecCCCCeEEEeeCCCcEEEEEecCCcceeE
Q psy18231 426 RDC-QCILTCSTDECLRLFDKATGELLEEYKGHK-------SGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQIST 497 (540)
Q Consensus 426 p~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-------~~v~~~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~ 497 (540)
... ...++...-+.--++++.....+..+.... ..+..+ ..+|.+.+.+++..|+.|+++|..+++++..
T Consensus 449 ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~v--Vs~~~~~~~~~~hed~~Ir~~dn~~~~~l~s 526 (577)
T KOG0642|consen 449 SSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKV--VSHPTADITFTAHEDRSIRFFDNKTGKILHS 526 (577)
T ss_pred cchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceE--EecCCCCeeEecccCCceecccccccccchh
Confidence 322 222222233333344444444333332211 123333 6889999999999999999999999999999
Q ss_pred EEecccceeeeEEEEcCCCcEEEeec-CCeeEEEEccc
Q psy18231 498 LIHSVGKAVVNSLCSHPTRKHIMSAC-GNNVKLWTAEE 534 (540)
Q Consensus 498 ~~~~~~~~~v~~l~~s~d~~~l~s~~-d~~i~iw~~~~ 534 (540)
.. .|...++++++.|+|.+|++++ |+.+++|++..
T Consensus 527 ~~--a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~ 562 (577)
T KOG0642|consen 527 MV--AHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDV 562 (577)
T ss_pred ee--eccceecceeecCCCceEEeecCCceeehhhccc
Confidence 98 8999999999999999999999 99999999853
|
|
| >COG2319 FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.86 E-value=8.4e-19 Score=173.26 Aligned_cols=288 Identities=26% Similarity=0.437 Sum_probs=227.6
Q ss_pred eeeeeecCeEEEEeCCCCCEEEEeeCCCcEEEEcCCCCe-eEEEeecCCc-ceeEEEE-eeCCC-eEEEeeC-CCeEEEE
Q psy18231 159 RELFVLSGLMHTRFPVDGSYCLTCGSDKKIKLWNPYRNL-LLKTYGGHAH-EVNDATA-ACDSS-QIASGAS-DKSVILW 233 (540)
Q Consensus 159 ~~~~h~~~v~~v~~spdg~~lat~~~dg~i~iwd~~~~~-~~~~~~~h~~-~v~~l~~-sp~~~-~l~s~s~-dg~i~iw 233 (540)
....|...+.++.|.+.+..++.++.|+.+.+|+...+. ....+.++.. .+..+.+ ++++. .++..+. |+.+.+|
T Consensus 60 ~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 139 (466)
T COG2319 60 LLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLW 139 (466)
T ss_pred eeeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEEE
Confidence 455789999999999999999999999999999998886 6777776443 7777777 78787 5555445 9999999
Q ss_pred EcCC-CceeEeccccCCceeEEEECCCCCEEEEecC-CCcEEEEEecCCCCCCcchhhhhHhhhhcCCceeEEEEeeccc
Q psy18231 234 EVTT-GQPVRRWREHASKVTCVKFNEDSSVVISGSQ-DNTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKST 311 (540)
Q Consensus 234 d~~~-~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (540)
+... ......+..|...|..++|+|++..+++++. |+.+++|++.....
T Consensus 140 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------- 190 (466)
T COG2319 140 DLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKP----------------------------- 190 (466)
T ss_pred EecCCCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCce-----------------------------
Confidence 9988 7788888899999999999999998888886 99999999987431
Q ss_pred ccccccCceeeEEEeeeecccccceeeeeeccceeEEEeecccceecccccccccccchhhhhhcccccEEEEEecC--C
Q psy18231 312 KNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEARDSITSVHVSD--H 389 (540)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~--~ 389 (540)
...+..|...+.+++++| .
T Consensus 191 -----------------------------------------------------------~~~~~~~~~~v~~~~~~~~~~ 211 (466)
T COG2319 191 -----------------------------------------------------------LSTLAGHTDPVSSLAFSPDGG 211 (466)
T ss_pred -----------------------------------------------------------EEeeccCCCceEEEEEcCCcc
Confidence 114445889999999998 3
Q ss_pred -eeEeeeCCCeEEEEeCCCCceEE-eeeCCceE-EEEEecCCcEEEeecCCCeEEEEeccccch-hhhhccCcCCcceEE
Q psy18231 390 -EILTASLDCRIRRYDIRTGNLVT-DYVGEPIV-DACFTRDCQCILTCSTDECLRLFDKATGEL-LEEYKGHKSGDFRIE 465 (540)
Q Consensus 390 -~l~~~~~dg~i~iwd~~~~~~~~-~~~~~~i~-~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~v~~~~ 465 (540)
.+++++.|+.|++||...+.... .+.++... ...|+|++.++++++.|+.+++||...... +..+..|...+..+
T Consensus 212 ~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~- 290 (466)
T COG2319 212 LLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSV- 290 (466)
T ss_pred eEEEEecCCCcEEEEECCCCcEEeeecCCCCcceeEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEEecCCccEEEE-
Confidence 44444899999999998777776 45543221 338999998999999999999999987664 44446777777777
Q ss_pred EEecCCCCeEEEeeCCCcEEEEEecCCcceeEEEecccceeeeEEEEcCCCcEEEee-c-CCeeEEEEccccc
Q psy18231 466 CCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSA-C-GNNVKLWTAEEDY 536 (540)
Q Consensus 466 ~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~-~-d~~i~iw~~~~~~ 536 (540)
.|+|++..+++++.|+.+.+||..+...........|...+..+.|.+++..++.+ . |+.+.+|+.....
T Consensus 291 -~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 362 (466)
T COG2319 291 -AFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGK 362 (466)
T ss_pred -EECCCCCEEEEeeCCCcEEEEEcCCCceEEEeeecccCCceEEEEECCCCCEEEEeecCCCcEEeeecCCCc
Confidence 89998888888999999999998877766555422577789999994343566666 5 9999999987653
|
|
| >KOG1963|consensus | Back alignment and domain information |
|---|
Probab=99.86 E-value=3.3e-19 Score=171.38 Aligned_cols=310 Identities=16% Similarity=0.229 Sum_probs=221.5
Q ss_pred cceeeeecccccc-------eeeeeecCeEEEEeCCCCCEEEEeeCCCcEEEEcCCC----CeeEEEeecCCcceeEEEE
Q psy18231 146 EWSIRVYRPLTVN-------RELFVLSGLMHTRFPVDGSYCLTCGSDKKIKLWNPYR----NLLLKTYGGHAHEVNDATA 214 (540)
Q Consensus 146 ~~~i~~~~~~~~~-------~~~~h~~~v~~v~~spdg~~lat~~~dg~i~iwd~~~----~~~~~~~~~h~~~v~~l~~ 214 (540)
+..+.+|...+.. ....|+-.++|.++||+++++|+|..||.|.+|.-.. ......+.-|...|.+++|
T Consensus 180 ~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~f 259 (792)
T KOG1963|consen 180 MCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSF 259 (792)
T ss_pred eeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEE
Confidence 3445566555422 1234777899999999999999999999999996322 2345567789999999999
Q ss_pred eeCCCeEEEeeCCCeEEEEEcCCCceeEeccccCCceeEEEECCCCCEEEEecCCCcEEEEEecCCCCCCcchhhhhHhh
Q psy18231 215 ACDSSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQVRCLNEAL 294 (540)
Q Consensus 215 sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 294 (540)
+++|.+|++|+..|.+.+|.+.+++ .+-+..-.++|..+.++||+.+.+....|..|.+....+.......
T Consensus 260 S~~G~~LlSGG~E~VLv~Wq~~T~~-kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tI-------- 330 (792)
T KOG1963|consen 260 SSDGAYLLSGGREGVLVLWQLETGK-KQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTI-------- 330 (792)
T ss_pred ecCCceEeecccceEEEEEeecCCC-cccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhc--------
Confidence 9999999999999999999999998 5556677899999999999999999999999999987665421110
Q ss_pred hhcCCceeEEEEeecccccccccCceeeEEEeeeecccccceeeeeeccceeEEEeecccceecccccccccccchhhhh
Q psy18231 295 KEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQAL 374 (540)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (540)
.+. .+. .....
T Consensus 331 sgi----------------------------------------------------------------~~~-----~~~~k 341 (792)
T KOG1963|consen 331 SGI----------------------------------------------------------------KPP-----TPSTK 341 (792)
T ss_pred cCc----------------------------------------------------------------cCC-----Ccccc
Confidence 000 000 00001
Q ss_pred hcccccEEEEEecC--CeeEeeeCCCeEEEEeCCCCceEEeeeC-------------CceEEEEEecCCcEEEeec----
Q psy18231 375 KEARDSITSVHVSD--HEILTASLDCRIRRYDIRTGNLVTDYVG-------------EPIVDACFTRDCQCILTCS---- 435 (540)
Q Consensus 375 ~~~~~~v~~l~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~-------------~~i~~~~~sp~~~~l~~~~---- 435 (540)
....+-.+.++++| +.++..+..|.|.+||+.+.+.+..++- -.+++++.+-.|+++++..
T Consensus 342 ~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d 421 (792)
T KOG1963|consen 342 TRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARID 421 (792)
T ss_pred ccccccceeEEEcCCCCceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeeh
Confidence 11234455677777 7788889999999999999887766641 1477888888899999864
Q ss_pred ----CCC--eEEEEeccccc----hh-hhhccCcCCcceEEEEecCCCC-eEEEeeCCCcEEEEEecCCccee-------
Q psy18231 436 ----TDE--CLRLFDKATGE----LL-EEYKGHKSGDFRIECCLDSKDS-QIFCGSSDGKIYKWQLVDSSQIS------- 496 (540)
Q Consensus 436 ----~dg--~i~i~d~~~~~----~~-~~~~~~~~~v~~~~~~~s~~~~-~l~s~s~dg~i~iwd~~~~~~~~------- 496 (540)
.|| .+++|-..... +. .....|........ ..++... ..++++.||.++||-+.+.+.+.
T Consensus 422 ~~~~~~~e~~LKFW~~n~~~kt~~L~T~I~~PH~~~~vat~-~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~ 500 (792)
T KOG1963|consen 422 KFNFFDGEVSLKFWQYNPNSKTFILNTKINNPHGNAFVATI-FLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWT 500 (792)
T ss_pred hhhccCceEEEEEEEEcCCcceeEEEEEEecCCCceeEEEE-EecCcccceeEEeccCCeEEEEEEecccccCcCccceE
Confidence 233 46778544332 11 22345665554442 2333333 79999999999999984432211
Q ss_pred -EEEecccceeeeEEEEcCCCcEEEeecCCeeEEEEccc
Q psy18231 497 -TLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEE 534 (540)
Q Consensus 497 -~~~~~~~~~~v~~l~~s~d~~~l~s~~d~~i~iw~~~~ 534 (540)
.....-|..++++++|+.||..|+.+-|++|.+||..+
T Consensus 501 c~~i~sy~k~~i~a~~fs~dGslla~s~~~~Itiwd~~~ 539 (792)
T KOG1963|consen 501 CKAIGSYHKTPITALCFSQDGSLLAVSFDDTITIWDYDT 539 (792)
T ss_pred EeeeeccccCcccchhhcCCCcEEEEecCCEEEEecCCC
Confidence 11111478899999999999888777799999999876
|
|
| >KOG2333|consensus | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.8e-22 Score=180.69 Aligned_cols=110 Identities=24% Similarity=0.379 Sum_probs=105.3
Q ss_pred cCCceEEeccCCCCCHHHHHHHHHcCCCEEEeeeeecccccccchhhccccccCCCCCCEEEEEecCChhHHHHHHHHhc
Q psy18231 14 LKNLKHCDSTLWTSKLNFRQLVRSHNVDLCFTPMIIADSFIKSSKARNNEFSTSPEDTPLVVQFASNNHDDFVRATQYVA 93 (540)
Q Consensus 14 ~~~~~~~ap~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~ 93 (540)
+..+.||||+..++|||||+||+++|||++|.||..|..++++...+++.+..+..|..+.+|++|+.|+.|.++++.+.
T Consensus 263 ~r~K~~LaPLTTvGNLPFRRlCk~lGADvTcgEMA~~tpLlqG~~sEWALlkRH~sEdiFGVQlag~~pdt~~kaaq~i~ 342 (614)
T KOG2333|consen 263 FRDKKYLAPLTTVGNLPFRRLCKKLGADVTCGEMAMATPLLQGTASEWALLKRHQSEDIFGVQLAGSKPDTAAKAAQVIA 342 (614)
T ss_pred cccceeeccccccCCccHHHHHHHhCCccchhHHHHHHHHhcccchhhhhhhhcCcccceeeEeccCChHHHHHHHHHHH
Confidence 34689999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred C--CCCeEeeccCCCceEEEeccccceecccc
Q psy18231 94 P--HCNGVDLNCGCPQRWAIKEGYGCALLSKQ 123 (540)
Q Consensus 94 ~--~~~~id~~~gc~~~~~~~~g~g~~l~~~~ 123 (540)
+ .+|+||+|+|||...+.+.|.|++||.++
T Consensus 343 e~~~VDFIDlN~GCPIDlvy~qG~GsALl~rp 374 (614)
T KOG2333|consen 343 ETCDVDFIDLNMGCPIDLVYRQGGGSALLNRP 374 (614)
T ss_pred hhcceeeeeccCCCChheeeccCCcchhhcCc
Confidence 6 67899999999999999999999999985
|
|
| >KOG0650|consensus | Back alignment and domain information |
|---|
Probab=99.86 E-value=3.9e-20 Score=169.67 Aligned_cols=276 Identities=17% Similarity=0.204 Sum_probs=200.0
Q ss_pred eEEEeecCCcceeEEEEeeCCCeEEEeeCCCeEEEEEcCCCceeEeccccCCceeEEEECCCCC--EEEEecCCCcEEEE
Q psy18231 198 LLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSS--VVISGSQDNTVMMW 275 (540)
Q Consensus 198 ~~~~~~~h~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~--~l~s~~~dg~i~iw 275 (540)
+-..+.+|++.|.++...|.|.+|++|+.||+|+||.+.+|.++.++. ..+.|.|++|+|.+. .||++- +..+.|-
T Consensus 392 ~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~-~d~~I~~vaw~P~~~~~vLAvA~-~~~~~iv 469 (733)
T KOG0650|consen 392 CALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQ-FDSEIRSVAWNPLSDLCVLAVAV-GECVLIV 469 (733)
T ss_pred eeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEe-ecceeEEEEecCCCCceeEEEEe-cCceEEe
Confidence 345678999999999999999999999999999999999999999875 467999999999664 444443 3446666
Q ss_pred EecCCCCCCcchhhhhHhhhhcCCceeEEEEeecccccccccCceeeEEEeeeecccccceeeeeeccceeEEEeecccc
Q psy18231 276 DVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGS 355 (540)
Q Consensus 276 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (540)
+..-+.. +........+...... ...+..+..|....
T Consensus 470 np~~G~~--~e~~~t~ell~~~~~~----------------------------------------~~p~~~~~~W~~~~- 506 (733)
T KOG0650|consen 470 NPIFGDR--LEVGPTKELLASAPNE----------------------------------------SEPDAAVVTWSRAS- 506 (733)
T ss_pred Cccccch--hhhcchhhhhhcCCCc----------------------------------------cCCcccceeechhh-
Confidence 6544421 1100000000000000 00000111111000
Q ss_pred eecccccccccccchhhhhhcccccEEEEEecC--CeeEeeeC---CCeEEEEeCCCCceEEee--eCCceEEEEEecCC
Q psy18231 356 TQIGDVTPISIHNSCFQALKEARDSITSVHVSD--HEILTASL---DCRIRRYDIRTGNLVTDY--VGEPIVDACFTRDC 428 (540)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~--~~l~~~~~---dg~i~iwd~~~~~~~~~~--~~~~i~~~~~sp~~ 428 (540)
......-++....|...|..+.|+. .+|++... ...|.|+++...+...-+ ..+.+.++.|+|..
T Consensus 507 --------~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~ 578 (733)
T KOG0650|consen 507 --------LDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSK 578 (733)
T ss_pred --------hhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEEEEecccccccCchhhcCCceeEEEecCCC
Confidence 0000001224456788999999998 88887655 357889999876655444 34789999999999
Q ss_pred cEEEeecCCCeEEEEeccccchhhhhccCcCCcceEEEEecCCCCeEEEeeCCCcEEEEEecCC-cceeEEEecccceee
Q psy18231 429 QCILTCSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDS-SQISTLIHSVGKAVV 507 (540)
Q Consensus 429 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~s~~~~~l~s~s~dg~i~iwd~~~~-~~~~~~~~~~~~~~v 507 (540)
.+|++++. ..|+|||+..++.++.+......+..+ +.+|.|.-|+.|+.|+.+..+|+.-+ ++.++++ .|...+
T Consensus 579 p~lfVaTq-~~vRiYdL~kqelvKkL~tg~kwiS~m--sihp~GDnli~gs~d~k~~WfDldlsskPyk~lr--~H~~av 653 (733)
T KOG0650|consen 579 PYLFVATQ-RSVRIYDLSKQELVKKLLTGSKWISSM--SIHPNGDNLILGSYDKKMCWFDLDLSSKPYKTLR--LHEKAV 653 (733)
T ss_pred ceEEEEec-cceEEEehhHHHHHHHHhcCCeeeeee--eecCCCCeEEEecCCCeeEEEEcccCcchhHHhh--hhhhhh
Confidence 99988876 579999999999998888777667766 89999999999999999999999754 6778888 899999
Q ss_pred eEEEEcCCCcEEEeec-CCeeEEEE
Q psy18231 508 NSLCSHPTRKHIMSAC-GNNVKLWT 531 (540)
Q Consensus 508 ~~l~~s~d~~~l~s~~-d~~i~iw~ 531 (540)
++++|++.-.++++|+ ||++.|+.
T Consensus 654 r~Va~H~ryPLfas~sdDgtv~Vfh 678 (733)
T KOG0650|consen 654 RSVAFHKRYPLFASGSDDGTVIVFH 678 (733)
T ss_pred hhhhhccccceeeeecCCCcEEEEe
Confidence 9999999999999999 99998875
|
|
| >KOG0303|consensus | Back alignment and domain information |
|---|
Probab=99.85 E-value=7e-20 Score=159.81 Aligned_cols=212 Identities=16% Similarity=0.216 Sum_probs=170.0
Q ss_pred eccccCCceeEEEECC-CCCEEEEecCCCcEEEEEecCCCCCCcchhhhhHhhhhcCCceeEEEEeecccccccccCcee
Q psy18231 243 RWREHASKVTCVKFNE-DSSVVISGSQDNTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHLSNGLLT 321 (540)
Q Consensus 243 ~~~~h~~~v~~~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (540)
.+.+|+++|..++|+| +.+.||+||+|.+|.||.+..+....-.
T Consensus 76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~l----------------------------------- 120 (472)
T KOG0303|consen 76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDL----------------------------------- 120 (472)
T ss_pred CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCc-----------------------------------
Confidence 3568999999999999 6688999999999999999765421110
Q ss_pred eEEEeeeecccccceeeeeeccceeEEEeecccceecccccccccccchhhhhhcccccEEEEEecC---CeeEeeeCCC
Q psy18231 322 KLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEARDSITSVHVSD---HEILTASLDC 398 (540)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~---~~l~~~~~dg 398 (540)
..++..+.+|...|--++|+| +.|++++.|.
T Consensus 121 ----------------------------------------------tepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn 154 (472)
T KOG0303|consen 121 ----------------------------------------------TEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDN 154 (472)
T ss_pred ----------------------------------------------ccceEEEeecceeEEEEeecccchhhHhhccCCc
Confidence 012336789999999999999 8999999999
Q ss_pred eEEEEeCCCCceEEeeeC-CceEEEEEecCCcEEEeecCCCeEEEEeccccchhhhhccCcCCcceEEEEecCCCCeEEE
Q psy18231 399 RIRRYDIRTGNLVTDYVG-EPIVDACFTRDCQCILTCSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFC 477 (540)
Q Consensus 399 ~i~iwd~~~~~~~~~~~~-~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~s~~~~~l~s 477 (540)
+|.+||+.+++.+.++.. ..|++++|+.||.+|++.+.|..|+|||.++++.+..-.+|.+.-. .+..|-.+|..+.+
T Consensus 155 ~v~iWnv~tgeali~l~hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~-~Raifl~~g~i~tT 233 (472)
T KOG0303|consen 155 TVSIWNVGTGEALITLDHPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKP-ARAIFLASGKIFTT 233 (472)
T ss_pred eEEEEeccCCceeeecCCCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCc-ceeEEeccCceeee
Confidence 999999999998877763 5799999999999999999999999999999999988888876432 33368888885555
Q ss_pred ee---CCCcEEEEEecCCcceeEEEecccceeeeEEEEcCCCcEEEeec--CCeeEEEEccccc
Q psy18231 478 GS---SDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC--GNNVKLWTAEEDY 536 (540)
Q Consensus 478 ~s---~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~--d~~i~iw~~~~~~ 536 (540)
|- .+..+.+||..+-+....+..-.....|.---|.||.+++..++ |+.|+-|.+.++.
T Consensus 234 Gfsr~seRq~aLwdp~nl~eP~~~~elDtSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~ 297 (472)
T KOG0303|consen 234 GFSRMSERQIALWDPNNLEEPIALQELDTSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEP 297 (472)
T ss_pred ccccccccceeccCcccccCcceeEEeccCCceEEeeecCCCCEEEEEecCCcceEEEEecCCC
Confidence 42 67889999977654433333223555677777899999988887 9999999998764
|
|
| >KOG0307|consensus | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.4e-21 Score=189.94 Aligned_cols=240 Identities=21% Similarity=0.302 Sum_probs=189.2
Q ss_pred ecCeEEEEeCCCCCE----EEEeeCCCcEEEEcCCCC------eeEEEeecCCcceeEEEEeeCC-CeEEEeeCCCeEEE
Q psy18231 164 LSGLMHTRFPVDGSY----CLTCGSDKKIKLWNPYRN------LLLKTYGGHAHEVNDATAACDS-SQIASGASDKSVIL 232 (540)
Q Consensus 164 ~~~v~~v~~spdg~~----lat~~~dg~i~iwd~~~~------~~~~~~~~h~~~v~~l~~sp~~-~~l~s~s~dg~i~i 232 (540)
...-+.++|.+.|.. ||.|..||.|.+||...- ..+.+...|++.|..+.|++.. ++||+|+.||.|.|
T Consensus 64 ~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~i 143 (1049)
T KOG0307|consen 64 SNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILI 143 (1049)
T ss_pred cccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEE
Confidence 355678899887765 888899999999997652 4466778899999999999955 59999999999999
Q ss_pred EEcCCCceeEecc--ccCCceeEEEECC-CCCEEEEecCCCcEEEEEecCCCCCCcchhhhhHhhhhcCCceeEEEEeec
Q psy18231 233 WEVTTGQPVRRWR--EHASKVTCVKFNE-DSSVVISGSQDNTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVK 309 (540)
Q Consensus 233 wd~~~~~~~~~~~--~h~~~v~~~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (540)
||+..-+.-.... ...+.|.+++|+. ....|++++.+|.+.|||++..+. +.
T Consensus 144 WDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~p--ii----------------------- 198 (1049)
T KOG0307|consen 144 WDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKP--II----------------------- 198 (1049)
T ss_pred eccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCc--cc-----------------------
Confidence 9998765444432 2467899999987 446789999999999999998752 11
Q ss_pred ccccccccCceeeEEEeeeecccccceeeeeeccceeEEEeecccceecccccccccccchhhhhhcc--cccEEEEEec
Q psy18231 310 STKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEA--RDSITSVHVS 387 (540)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~v~~l~~~ 387 (540)
.+..+ ...+..++|+
T Consensus 199 ---------------------------------------------------------------~ls~~~~~~~~S~l~Wh 215 (1049)
T KOG0307|consen 199 ---------------------------------------------------------------KLSDTPGRMHCSVLAWH 215 (1049)
T ss_pred ---------------------------------------------------------------ccccCCCccceeeeeeC
Confidence 11111 2457789999
Q ss_pred C---CeeEeeeCCC---eEEEEeCCCCc-eEEeeeC--CceEEEEEecCC-cEEEeecCCCeEEEEeccccchhhhhccC
Q psy18231 388 D---HEILTASLDC---RIRRYDIRTGN-LVTDYVG--EPIVDACFTRDC-QCILTCSTDECLRLFDKATGELLEEYKGH 457 (540)
Q Consensus 388 ~---~~l~~~~~dg---~i~iwd~~~~~-~~~~~~~--~~i~~~~~sp~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~ 457 (540)
| ..+++++.|. .|.+||++.-. .++.+.+ ..|.++.|.+.+ .+|++++.|+.|.+|+.++++.+..+...
T Consensus 216 P~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~ 295 (1049)
T KOG0307|consen 216 PDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQ 295 (1049)
T ss_pred CCCceeeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCC
Confidence 9 6677777654 58999998543 4455544 589999999965 89999999999999999999999999886
Q ss_pred cCCcceEEEEecCCCC-eEEEeeCCCcEEEEEecCCc
Q psy18231 458 KSGDFRIECCLDSKDS-QIFCGSSDGKIYKWQLVDSS 493 (540)
Q Consensus 458 ~~~v~~~~~~~s~~~~-~l~s~s~dg~i~iwd~~~~~ 493 (540)
...+..+ .|.|... .+++++.||.|-||.+....
T Consensus 296 ~nW~fdv--~w~pr~P~~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 296 GNWCFDV--QWCPRNPSVMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred Ccceeee--eecCCCcchhhhheeccceeeeeeecCC
Confidence 6666555 7887766 78899999999999987654
|
|
| >KOG1587|consensus | Back alignment and domain information |
|---|
Probab=99.85 E-value=4.8e-19 Score=170.13 Aligned_cols=271 Identities=13% Similarity=0.151 Sum_probs=197.5
Q ss_pred CcEEEEcCCCC-eeEEEeecCCcceeEEEEee-CCCeEEEeeCCCeEEEEEcCCCce--eEe----ccccCCceeEEEEC
Q psy18231 186 KKIKLWNPYRN-LLLKTYGGHAHEVNDATAAC-DSSQIASGASDKSVILWEVTTGQP--VRR----WREHASKVTCVKFN 257 (540)
Q Consensus 186 g~i~iwd~~~~-~~~~~~~~h~~~v~~l~~sp-~~~~l~s~s~dg~i~iwd~~~~~~--~~~----~~~h~~~v~~~~~~ 257 (540)
+.+.||++... .+...+. -...|+++.|+| +..+++.|..+|+|.+||++.+.. ... ...|..++..+.|.
T Consensus 222 ~~~~vW~~~~p~~Pe~~~~-~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~ 300 (555)
T KOG1587|consen 222 GVLLVWSLKNPNTPELVLE-SPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWL 300 (555)
T ss_pred ceEEEEecCCCCCceEEEe-cCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEe
Confidence 47999998876 4444444 578999999999 677788899999999999988754 222 23689999999997
Q ss_pred CCCC--EEEEecCCCcEEEEEecCCCCCCcchhhhhHhhhhcCCceeEEEEeecccccccccCceeeEEEeeeecccccc
Q psy18231 258 EDSS--VVISGSQDNTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGL 335 (540)
Q Consensus 258 ~~~~--~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (540)
.+.. -+++++.||.|..|+++.-.. +...........
T Consensus 301 ~~~~~~~f~s~ssDG~i~~W~~~~l~~-P~e~~~~~~~~~---------------------------------------- 339 (555)
T KOG1587|consen 301 QNEHNTEFFSLSSDGSICSWDTDMLSL-PVEGLLLESKKH---------------------------------------- 339 (555)
T ss_pred ccCCCCceEEEecCCcEeeeecccccc-chhhcccccccc----------------------------------------
Confidence 7544 499999999999998776542 111000000000
Q ss_pred eeeeeeccceeEEEeecccceecccccccccccchhhhhhcccccEEEEEecC---CeeEeeeCCCeEEEEe---CCCCc
Q psy18231 336 LSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEARDSITSVHVSD---HEILTASLDCRIRRYD---IRTGN 409 (540)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~---~~l~~~~~dg~i~iwd---~~~~~ 409 (540)
...-......+++++|.+ ..+++|+.+|.|.-=+ .+...
T Consensus 340 -----------------------------------~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~ 384 (555)
T KOG1587|consen 340 -----------------------------------KGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAP 384 (555)
T ss_pred -----------------------------------cccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccc
Confidence 000012234677888876 8899999999988733 32222
Q ss_pred -e------EEeeeCCceEEEEEecCCcEEEeecCCCeEEEEecc-ccchhhhhccCcCCcceEEEEecCCCC-eEEEeeC
Q psy18231 410 -L------VTDYVGEPIVDACFTRDCQCILTCSTDECLRLFDKA-TGELLEEYKGHKSGDFRIECCLDSKDS-QIFCGSS 480 (540)
Q Consensus 410 -~------~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~-~~~~~~~~~~~~~~v~~~~~~~s~~~~-~l~s~s~ 480 (540)
. ....+.++|+++.++|-+..++..+.|.+++||... ...++..+..+...++.+ +|||... .++++..
T Consensus 385 ~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~v~~v--aWSptrpavF~~~d~ 462 (555)
T KOG1587|consen 385 EVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPDYVTDV--AWSPTRPAVFATVDG 462 (555)
T ss_pred cccccccccccccCcceEeeecCCCccceeeeeccceeEeccccCCCCcchhhhhccceeeee--EEcCcCceEEEEEcC
Confidence 1 112233789999999977666665669999999988 677888888888878877 8998765 4888889
Q ss_pred CCcEEEEEecCC--cceeEEEecccceeeeEEEEcCCCcEEEeec-CCeeEEEEcccccC
Q psy18231 481 DGKIYKWQLVDS--SQISTLIHSVGKAVVNSLCSHPTRKHIMSAC-GNNVKLWTAEEDYG 537 (540)
Q Consensus 481 dg~i~iwd~~~~--~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~-d~~i~iw~~~~~~~ 537 (540)
||.|.+||+... .++.+.+ .+....+.+.|+++|+.|+.|+ .|++.+|++...+.
T Consensus 463 ~G~l~iWDLl~~~~~Pv~s~~--~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~~l~ 520 (555)
T KOG1587|consen 463 DGNLDIWDLLQDDEEPVLSQK--VCSPALTRVRWSPNGKLLAVGDANGTTHILKLSESLA 520 (555)
T ss_pred CCceehhhhhccccCCccccc--ccccccceeecCCCCcEEEEecCCCcEEEEEcCchhh
Confidence 999999999754 4455554 5567788889999999999999 99999999976654
|
|
| >KOG1034|consensus | Back alignment and domain information |
|---|
Probab=99.85 E-value=7.6e-21 Score=161.92 Aligned_cols=235 Identities=17% Similarity=0.242 Sum_probs=175.4
Q ss_pred hhhhhhcccccceeeeecccccc---eeeeeecCeEEEEeCCCC-CEEEEeeCCCcEEEEcCCCCeeEEEe---ecCCcc
Q psy18231 136 ITRILYELPKEWSIRVYRPLTVN---RELFVLSGLMHTRFPVDG-SYCLTCGSDKKIKLWNPYRNLLLKTY---GGHAHE 208 (540)
Q Consensus 136 ~~~~~~~~~~~~~i~~~~~~~~~---~~~~h~~~v~~v~~spdg-~~lat~~~dg~i~iwd~~~~~~~~~~---~~h~~~ 208 (540)
....++.++..+.||+.++.+.. ...+|..+|+.+.|.|+. ++|+++|.|.+|++||+++..++..+ .+|.+.
T Consensus 104 ~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrde 183 (385)
T KOG1034|consen 104 GNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDE 183 (385)
T ss_pred CCeeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCc
Confidence 35566667788999999998864 568899999999999965 68889999999999999999999887 579999
Q ss_pred eeEEEEeeCCCeEEEeeCCCeEEEEEcCCCceeE----------------------------eccccCCceeEEEECCCC
Q psy18231 209 VNDATAACDSSQIASGASDKSVILWEVTTGQPVR----------------------------RWREHASKVTCVKFNEDS 260 (540)
Q Consensus 209 v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~----------------------------~~~~h~~~v~~~~~~~~~ 260 (540)
|.++.|+++|.+|++++.|.++++|++...+... +-.-|...|.|+.|- |
T Consensus 184 VLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~--g 261 (385)
T KOG1034|consen 184 VLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF--G 261 (385)
T ss_pred EEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHH--h
Confidence 9999999999999999999999999997332100 112477788888886 6
Q ss_pred CEEEEecCCCcEEEEEecCCCCCCcchhhhhHhhhhcCCceeEEEEeecccccccccCceeeEEEeeeecccccceeeee
Q psy18231 261 SVVISGSQDNTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVL 340 (540)
Q Consensus 261 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (540)
+++++-|-++.|..|.....+.......+ .
T Consensus 262 d~ilSkscenaI~~w~pgkl~e~~~~vkp-------~------------------------------------------- 291 (385)
T KOG1034|consen 262 DFILSKSCENAIVCWKPGKLEESIHNVKP-------P------------------------------------------- 291 (385)
T ss_pred hheeecccCceEEEEecchhhhhhhccCC-------C-------------------------------------------
Confidence 79999999999999987432210000000 0
Q ss_pred eccceeEEEeecccceecccccccccccchhhhhhcccccEEEE--EecC--CeeEeeeCCCeEEEEeCCCCceE-----
Q psy18231 341 MSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEARDSITSV--HVSD--HEILTASLDCRIRRYDIRTGNLV----- 411 (540)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l--~~~~--~~l~~~~~dg~i~iwd~~~~~~~----- 411 (540)
......+..+.-....|.-+ ++++ +.|+.|...|.+.+||++..++.
T Consensus 292 ------------------------es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl 347 (385)
T KOG1034|consen 292 ------------------------ESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKCTTL 347 (385)
T ss_pred ------------------------ccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCccCceE
Confidence 00000011122223344444 4455 88999999999999999976652
Q ss_pred -EeeeCCceEEEEEecCCcEEEeecCCCeEEEEecc
Q psy18231 412 -TDYVGEPIVDACFTRDCQCILTCSTDECLRLFDKA 446 (540)
Q Consensus 412 -~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~ 446 (540)
....+..|...+||.||.+|+..+.|++|.-||..
T Consensus 348 ~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 348 THSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDRV 383 (385)
T ss_pred EeccccceeeeeeecccCcEEEEEeCCCcEEEEEee
Confidence 12223679999999999999999999999999853
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.3e-18 Score=162.42 Aligned_cols=267 Identities=11% Similarity=0.202 Sum_probs=176.5
Q ss_pred EeeCCCcEEEEcCCC-Ce--eEEEeecCCcceeEEEEeeCCCeEEEee-CCCeEEEEEcCC-Cce--eEeccccCCceeE
Q psy18231 181 TCGSDKKIKLWNPYR-NL--LLKTYGGHAHEVNDATAACDSSQIASGA-SDKSVILWEVTT-GQP--VRRWREHASKVTC 253 (540)
Q Consensus 181 t~~~dg~i~iwd~~~-~~--~~~~~~~h~~~v~~l~~sp~~~~l~s~s-~dg~i~iwd~~~-~~~--~~~~~~h~~~v~~ 253 (540)
+...++.|.+|++.+ ++ .+..+. +.+....++++|++++|++++ .++.|.+|++.. ++. +... ...+....
T Consensus 7 ~~~~~~~I~~~~~~~~g~l~~~~~~~-~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~-~~~~~p~~ 84 (330)
T PRK11028 7 ASPESQQIHVWNLNHEGALTLLQVVD-VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAES-PLPGSPTH 84 (330)
T ss_pred EcCCCCCEEEEEECCCCceeeeeEEe-cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeee-cCCCCceE
Confidence 346689999999964 33 445554 446678899999999987664 578999999963 332 2222 12345678
Q ss_pred EEECCCCCEEEEecC-CCcEEEEEecCCCCCCcchhhhhHhhhhcCCceeEEEEeecccccccccCceeeEEEeeeeccc
Q psy18231 254 VKFNEDSSVVISGSQ-DNTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYL 332 (540)
Q Consensus 254 ~~~~~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (540)
++|+|+++++++++. ++.|.+|++.+.......
T Consensus 85 i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~---------------------------------------------- 118 (330)
T PRK11028 85 ISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAP---------------------------------------------- 118 (330)
T ss_pred EEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCc----------------------------------------------
Confidence 999999998888764 789999999643210000
Q ss_pred ccceeeeeeccceeEEEeecccceecccccccccccchhhhhhcccccEEEEEecC--CeeE-eeeCCCeEEEEeCCCCc
Q psy18231 333 NGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEARDSITSVHVSD--HEIL-TASLDCRIRRYDIRTGN 409 (540)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~--~~l~-~~~~dg~i~iwd~~~~~ 409 (540)
.... .+.....+++++| ++++ +...++.|.+||+++..
T Consensus 119 --------------------------------------~~~~-~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g 159 (330)
T PRK11028 119 --------------------------------------IQII-EGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDG 159 (330)
T ss_pred --------------------------------------eeec-cCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCC
Confidence 0000 0112345567777 4554 45567999999998643
Q ss_pred eEE-------e-eeCCceEEEEEecCCcEEEeecC-CCeEEEEeccc--cc--hhhhhccCc----CCcceEEEEecCCC
Q psy18231 410 LVT-------D-YVGEPIVDACFTRDCQCILTCST-DECLRLFDKAT--GE--LLEEYKGHK----SGDFRIECCLDSKD 472 (540)
Q Consensus 410 ~~~-------~-~~~~~i~~~~~sp~~~~l~~~~~-dg~i~i~d~~~--~~--~~~~~~~~~----~~v~~~~~~~s~~~ 472 (540)
.+. . ..+.....+.|+|+|+++++++. ++.|.+||+.. ++ .+..+..+. ...+...+.++|++
T Consensus 160 ~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg 239 (330)
T PRK11028 160 HLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDG 239 (330)
T ss_pred cccccCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCC
Confidence 221 1 12455678999999999988876 89999999973 22 232222211 11223345899999
Q ss_pred CeEEEee-CCCcEEEEEecCCcceeEEE-ecccceeeeEEEEcCCCcEEEeec--CCeeEEEEccc
Q psy18231 473 SQIFCGS-SDGKIYKWQLVDSSQISTLI-HSVGKAVVNSLCSHPTRKHIMSAC--GNNVKLWTAEE 534 (540)
Q Consensus 473 ~~l~s~s-~dg~i~iwd~~~~~~~~~~~-~~~~~~~v~~l~~s~d~~~l~s~~--d~~i~iw~~~~ 534 (540)
++++++. .++.|.+|++.......++. ...-......+.|+|||++|+++. +++|.+|+++.
T Consensus 240 ~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~~ 305 (330)
T PRK11028 240 RHLYACDRTASLISVFSVSEDGSVLSFEGHQPTETQPRGFNIDHSGKYLIAAGQKSHHISVYEIDG 305 (330)
T ss_pred CEEEEecCCCCeEEEEEEeCCCCeEEEeEEEeccccCCceEECCCCCEEEEEEccCCcEEEEEEcC
Confidence 9988885 47899999996543222222 001112456899999999999877 89999998853
|
|
| >COG2319 FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.85 E-value=5.9e-18 Score=167.19 Aligned_cols=298 Identities=29% Similarity=0.475 Sum_probs=233.2
Q ss_pred ccccceeeeecccc-c---ceeeeeecCeEEEEeCCCCCEEEEeeC-CCcEEEEcCCCCeeEEEeecCCcceeEEEEeeC
Q psy18231 143 LPKEWSIRVYRPLT-V---NRELFVLSGLMHTRFPVDGSYCLTCGS-DKKIKLWNPYRNLLLKTYGGHAHEVNDATAACD 217 (540)
Q Consensus 143 ~~~~~~i~~~~~~~-~---~~~~~h~~~v~~v~~spdg~~lat~~~-dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~ 217 (540)
...+..+.+|+... . .....|...|..++|+|+++++++++. |+.+++|+..++..+..+.+|...|.+++|+|+
T Consensus 130 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 209 (466)
T COG2319 130 SSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPD 209 (466)
T ss_pred CCCCccEEEEEecCCCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCC
Confidence 34477899999865 2 345669999999999999999998886 999999999998899999999999999999999
Q ss_pred CC-eEEEeeCCCeEEEEEcCCCceeE-eccccCCceeEEEECCCCCEEEEecCCCcEEEEEecCCCCCCcchhhhhHhhh
Q psy18231 218 SS-QIASGASDKSVILWEVTTGQPVR-RWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQVRCLNEALK 295 (540)
Q Consensus 218 ~~-~l~s~s~dg~i~iwd~~~~~~~~-~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 295 (540)
+. .+++++.|+.|++||...+..+. .+..|.... ...|++++..+++++.|+.+++|++..... ...
T Consensus 210 ~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~-~~~--------- 278 (466)
T COG2319 210 GGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSS-LLR--------- 278 (466)
T ss_pred cceEEEEecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCc-EEE---------
Confidence 98 55566999999999998888887 688888876 448999998999999999999999987652 000
Q ss_pred hcCCceeEEEEeecccccccccCceeeEEEeeeecccccceeeeeeccceeEEEeecccceecccccccccccchhhhhh
Q psy18231 296 EARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALK 375 (540)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (540)
...
T Consensus 279 -----------------------------------------------------------------------------~~~ 281 (466)
T COG2319 279 -----------------------------------------------------------------------------TLS 281 (466)
T ss_pred -----------------------------------------------------------------------------EEe
Confidence 113
Q ss_pred cccccEEEEEecC--CeeEeeeCCCeEEEEeCCCCceEEeee--C--CceEEEEEecCCcEEEee-cCCCeEEEEecccc
Q psy18231 376 EARDSITSVHVSD--HEILTASLDCRIRRYDIRTGNLVTDYV--G--EPIVDACFTRDCQCILTC-STDECLRLFDKATG 448 (540)
Q Consensus 376 ~~~~~v~~l~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~--~--~~i~~~~~sp~~~~l~~~-~~dg~i~i~d~~~~ 448 (540)
.|...+.++.++| ..+++++.|+.+.+||..+........ . ..+..+.+.+++..++.+ ..|+.+.+|+....
T Consensus 282 ~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 361 (466)
T COG2319 282 GHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTG 361 (466)
T ss_pred cCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEEeeecccCCceEEEEECCCCCEEEEeecCCCcEEeeecCCC
Confidence 5577888889988 777778888889999998887655543 2 348888884342455555 67899999999877
Q ss_pred chhhhhccCcCCcceEEEEecCCCCeEEE-eeCCCcEEEEEecCCcceeEEEecccceeeeEEEEcCCCcEEEeec-CCe
Q psy18231 449 ELLEEYKGHKSGDFRIECCLDSKDSQIFC-GSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC-GNN 526 (540)
Q Consensus 449 ~~~~~~~~~~~~v~~~~~~~s~~~~~l~s-~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~-d~~ 526 (540)
........... +..+ .+++ ...++. +..++.+.+|+........... .+...+....+++++..+++++ ++.
T Consensus 362 ~~~~~~~~~~~-~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 435 (466)
T COG2319 362 KPLKTLEGHSN-VLSV--SFSP-DGRVVSSGSTDGTVRLWDLSTGSLLRNLD--GHTSRVTSLDFSPDGKSLASGSSDNT 435 (466)
T ss_pred ceeEEecCCce-EEEE--EECC-CCCEEEEecCCCceEEEecccCeeeeecc--CCCCcEEEEEECCCCcEEEEecCCCc
Confidence 72222222222 4444 6666 444444 7899999999998888777776 3327899999999999999988 999
Q ss_pred eEEEEccc
Q psy18231 527 VKLWTAEE 534 (540)
Q Consensus 527 i~iw~~~~ 534 (540)
+++|+...
T Consensus 436 ~~~~~~~~ 443 (466)
T COG2319 436 IRLWDLKT 443 (466)
T ss_pred EEEEeccC
Confidence 99999876
|
|
| >KOG0322|consensus | Back alignment and domain information |
|---|
Probab=99.85 E-value=4.6e-20 Score=152.46 Aligned_cols=293 Identities=13% Similarity=0.130 Sum_probs=189.6
Q ss_pred eeeecCeEEEEeCCCCCEEEEeeCCCcEEEEcCCCCeeEEEee-cCCcceeEEEEeeCCCeEEEeeCCCeEEEEEcCCCc
Q psy18231 161 LFVLSGLMHTRFPVDGSYCLTCGSDKKIKLWNPYRNLLLKTYG-GHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQ 239 (540)
Q Consensus 161 ~~h~~~v~~v~~spdg~~lat~~~dg~i~iwd~~~~~~~~~~~-~h~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~ 239 (540)
..|.+.|+++.|-.+++ |.+|...|.|.+|++.+.+.+..+. .|+..|+.+.--|+ ..|.+-+.|+.+.+|++.-+.
T Consensus 11 Rp~~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~~L~lw~ia~s~ 88 (323)
T KOG0322|consen 11 RPHSSSVTSVLFQANER-LMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPN-DSLDTQGRDPLLILWTIAYSA 88 (323)
T ss_pred ccccchheehhhccchh-hhcccccceEEEEEeecCccchhhhhhccceeeceeecCC-cchhhcCCCceEEEEEccCcc
Confidence 37889999999998875 8899999999999999998888887 57888999999887 568999999999999997644
Q ss_pred eeEeccccCCceeEEEECCC-----C----CEEEEecCCCc-EEEEEecCCCCCCcchhhhhHhhhhcCCceeEEEEeec
Q psy18231 240 PVRRWREHASKVTCVKFNED-----S----SVVISGSQDNT-VMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVK 309 (540)
Q Consensus 240 ~~~~~~~h~~~v~~~~~~~~-----~----~~l~s~~~dg~-i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (540)
.+. .|.-.++++.|.+. + ..++.-++... +.+-|. +. +.++.-.........+...+...
T Consensus 89 ~i~---i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~--g~--~tqv~i~dd~~~~Klgsvmc~~~--- 158 (323)
T KOG0322|consen 89 FIS---IHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDG--GD--TTQVQIADDSERSKLGSVMCQDK--- 158 (323)
T ss_pred eEE---EeeeeccccccccceeccCCCcchhheecCCcccchhhhhcc--Cc--cceeEccCchhccccCceeeeec---
Confidence 322 22233333333321 0 01111100000 000000 00 00000011111111111111110
Q ss_pred ccccccccCceeeEEEeeeecccccceeeeeeccceeEEEeecccceecccccccccccchhhhhhcccccEEEEEecC-
Q psy18231 310 STKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEARDSITSVHVSD- 388 (540)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~- 388 (540)
................+.+.+|+......+-++ ....+.......|..+|.++.+.+
T Consensus 159 -------------------~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~---~~~~kv~~~~ash~qpvlsldyas~ 216 (323)
T KOG0322|consen 159 -------------------DHACGSTFLLLAGYESGHVVIWDLSTGDKIIQL---PQSSKVESPNASHKQPVLSLDYASS 216 (323)
T ss_pred -------------------cccccceEEEEEeccCCeEEEEEccCCceeecc---ccccccccchhhccCcceeeeechh
Confidence 000011112222233444444444333211111 111222335668999999999988
Q ss_pred -CeeEeeeCCCeEEEEeCCCC--ce----EEeeeCCceEEEEEecCCcEEEeecCCCeEEEEeccccchhhhhccCcCCc
Q psy18231 389 -HEILTASLDCRIRRYDIRTG--NL----VTDYVGEPIVDACFTRDCQCILTCSTDECLRLFDKATGELLEEYKGHKSGD 461 (540)
Q Consensus 389 -~~l~~~~~dg~i~iwd~~~~--~~----~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v 461 (540)
+.=++|+.+..+..|+++-. .+ ...++...+..+.+-||++.+|+++.|+.||+|+.++.+++..++-|...+
T Consensus 217 ~~rGisgga~dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagv 296 (323)
T KOG0322|consen 217 CDRGISGGADDKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGV 296 (323)
T ss_pred hcCCcCCCccccceeeeeccccCcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhcce
Confidence 77788888889999988743 22 234455789999999999999999999999999999999999999999999
Q ss_pred ceEEEEecCCCCeEEEeeCCCcEEEEEe
Q psy18231 462 FRIECCLDSKDSQIFCGSSDGKIYKWQL 489 (540)
Q Consensus 462 ~~~~~~~s~~~~~l~s~s~dg~i~iwd~ 489 (540)
.++ +|+|+-..+|++|.|++|.+|++
T Consensus 297 n~v--Afspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 297 NAV--AFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred eEE--EeCCCCchhhhccCCceEEeeec
Confidence 888 99999999999999999999986
|
|
| >KOG1007|consensus | Back alignment and domain information |
|---|
Probab=99.83 E-value=5.2e-19 Score=148.14 Aligned_cols=239 Identities=18% Similarity=0.230 Sum_probs=181.8
Q ss_pred eeeecCeEEEEeCCC-CCEEEEeeCC-------CcEEEEcCCCC---------eeEEEee-cCCcceeEEEEeeCCCeEE
Q psy18231 161 LFVLSGLMHTRFPVD-GSYCLTCGSD-------KKIKLWNPYRN---------LLLKTYG-GHAHEVNDATAACDSSQIA 222 (540)
Q Consensus 161 ~~h~~~v~~v~~spd-g~~lat~~~d-------g~i~iwd~~~~---------~~~~~~~-~h~~~v~~l~~sp~~~~l~ 222 (540)
..|.+.|..++=+|- .+.|+|+..+ ..+.||.+... +++..+. .+-+.|.|+.|.|++..++
T Consensus 60 ~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns~kla 139 (370)
T KOG1007|consen 60 FHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNSDKLA 139 (370)
T ss_pred hcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCCCeeE
Confidence 347788999999995 4556655431 35779987643 3344443 4567999999999999888
Q ss_pred EeeCCCeEEEEEcCCCce-eEecc-----ccCCceeEEEECC--CCCEEEEecCCCcEEEEEecCCCCCCcchhhhhHhh
Q psy18231 223 SGASDKSVILWEVTTGQP-VRRWR-----EHASKVTCVKFNE--DSSVVISGSQDNTVMMWDVKSRSHHPIQVRCLNEAL 294 (540)
Q Consensus 223 s~s~dg~i~iwd~~~~~~-~~~~~-----~h~~~v~~~~~~~--~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 294 (540)
+-. |..|.+|++..+.. +..+. +|....++-+|+| +++.+++.+ |+++..||+++.+.
T Consensus 140 sm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~-d~tl~~~D~RT~~~------------ 205 (370)
T KOG1007|consen 140 SMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATTS-DSTLQFWDLRTMKK------------ 205 (370)
T ss_pred Eec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEeC-CCcEEEEEccchhh------------
Confidence 876 78999999988765 33322 3567788899999 888888875 79999999998762
Q ss_pred hhcCCceeEEEEeecccccccccCceeeEEEeeeecccccceeeeeeccceeEEEeecccceecccccccccccchhhhh
Q psy18231 295 KEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQAL 374 (540)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (540)
....-
T Consensus 206 ---------------------------------------------------------------------------~~sI~ 210 (370)
T KOG1007|consen 206 ---------------------------------------------------------------------------NNSIE 210 (370)
T ss_pred ---------------------------------------------------------------------------hcchh
Confidence 11134
Q ss_pred hcccccEEEEEecC---CeeEeeeCCCeEEEEeCCCCc-eEEeeeC--CceEEEEEecC-CcEEEeecCCCeEEEEeccc
Q psy18231 375 KEARDSITSVHVSD---HEILTASLDCRIRRYDIRTGN-LVTDYVG--EPIVDACFTRD-CQCILTCSTDECLRLFDKAT 447 (540)
Q Consensus 375 ~~~~~~v~~l~~~~---~~l~~~~~dg~i~iwd~~~~~-~~~~~~~--~~i~~~~~sp~-~~~l~~~~~dg~i~i~d~~~ 447 (540)
..|...|..+.|+| ..|++++.||.|++||.+..+ +++++++ +.+.++.|+|. .+++++|+.|..|.+|...+
T Consensus 211 dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~s 290 (370)
T KOG1007|consen 211 DAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASS 290 (370)
T ss_pred hhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEecCCCceeEEEeccc
Confidence 56888899999999 679999999999999998654 6777775 68999999994 56788999999999996432
Q ss_pred c-----------------------------chhhhhccCcCCcceEEEEecCCCCe-EEEeeCCCcEEEEEec
Q psy18231 448 G-----------------------------ELLEEYKGHKSGDFRIECCLDSKDSQ-IFCGSSDGKIYKWQLV 490 (540)
Q Consensus 448 ~-----------------------------~~~~~~~~~~~~v~~~~~~~s~~~~~-l~s~s~dg~i~iwd~~ 490 (540)
- ..+.++..|...|+++ +||.-..+ +|+-+.||.+.|=.+.
T Consensus 291 vSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~--aWSsadPWiFASLSYDGRviIs~V~ 361 (370)
T KOG1007|consen 291 VSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYAL--AWSSADPWIFASLSYDGRVIISSVP 361 (370)
T ss_pred cccccccccccccccCcchhhHHhcccccccccccccccccceEEE--eeccCCCeeEEEeccCceEEeecCC
Confidence 1 0134677899999988 78877776 7888999999876643
|
|
| >KOG0303|consensus | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.3e-19 Score=156.66 Aligned_cols=122 Identities=20% Similarity=0.270 Sum_probs=111.4
Q ss_pred eeeeeecCeEEEEeCC-CCCEEEEeeCCCcEEEEcCCCC-------eeEEEeecCCcceeEEEEee-CCCeEEEeeCCCe
Q psy18231 159 RELFVLSGLMHTRFPV-DGSYCLTCGSDKKIKLWNPYRN-------LLLKTYGGHAHEVNDATAAC-DSSQIASGASDKS 229 (540)
Q Consensus 159 ~~~~h~~~v~~v~~sp-dg~~lat~~~dg~i~iwd~~~~-------~~~~~~~~h~~~v~~l~~sp-~~~~l~s~s~dg~ 229 (540)
...+|+++|..++|+| +...||+||.|.+|.||++..+ +++..+.+|...|--++|+| ..+.|++++.|.+
T Consensus 76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~ 155 (472)
T KOG0303|consen 76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNT 155 (472)
T ss_pred CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCce
Confidence 3458999999999999 5678999999999999998754 55778899999999999999 4567999999999
Q ss_pred EEEEEcCCCceeEeccccCCceeEEEECCCCCEEEEecCCCcEEEEEecCCC
Q psy18231 230 VILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRS 281 (540)
Q Consensus 230 i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~ 281 (540)
|.+||+.+|+.+.++. |.+-|+++.|+.||.+|++.+.|+.|+|||.++++
T Consensus 156 v~iWnv~tgeali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~ 206 (472)
T KOG0303|consen 156 VSIWNVGTGEALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGT 206 (472)
T ss_pred EEEEeccCCceeeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCCc
Confidence 9999999999988887 99999999999999999999999999999999887
|
|
| >KOG1188|consensus | Back alignment and domain information |
|---|
Probab=99.83 E-value=5.5e-19 Score=151.57 Aligned_cols=263 Identities=20% Similarity=0.277 Sum_probs=189.2
Q ss_pred hhcccccceeeeecccccc---eeeeeecCeEEEEeCC--CCCEEEEeeCCCcEEEEcCCCCeeEEEe--ecCC-cceeE
Q psy18231 140 LYELPKEWSIRVYRPLTVN---RELFVLSGLMHTRFPV--DGSYCLTCGSDKKIKLWNPYRNLLLKTY--GGHA-HEVND 211 (540)
Q Consensus 140 ~~~~~~~~~i~~~~~~~~~---~~~~h~~~v~~v~~sp--dg~~lat~~~dg~i~iwd~~~~~~~~~~--~~h~-~~v~~ 211 (540)
++..-..+.|++|+..+.. ...+|...++.++|.. .+..+.+++.||+|++||+.+......+ ..+. .+..+
T Consensus 43 vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~~ 122 (376)
T KOG1188|consen 43 VAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPFIC 122 (376)
T ss_pred EEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcceE
Confidence 3344566789999988844 3345778888888876 4567889999999999999877555443 4454 46677
Q ss_pred EEEeeCCCeEEEeeC----CCeEEEEEcCCCce-eEe-ccccCCceeEEEECC-CCCEEEEecCCCcEEEEEecCCCCCC
Q psy18231 212 ATAACDSSQIASGAS----DKSVILWEVTTGQP-VRR-WREHASKVTCVKFNE-DSSVVISGSQDNTVMMWDVKSRSHHP 284 (540)
Q Consensus 212 l~~sp~~~~l~s~s~----dg~i~iwd~~~~~~-~~~-~~~h~~~v~~~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~ 284 (540)
++.+..++.+++|.. |-.|.+||++..+. +.. ...|.+.|+++.|+| +.+.|++||.||-|.+||+.....
T Consensus 123 ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~E-- 200 (376)
T KOG1188|consen 123 LDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNE-- 200 (376)
T ss_pred eeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcc--
Confidence 777767888888754 56899999998776 554 457999999999999 668999999999999999976542
Q ss_pred cchhhhhHhhhhcCCceeEEEEeecccccccccCceeeEEEeeeecccccceeeeeeccceeEEEeecccceeccccccc
Q psy18231 285 IQVRCLNEALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPI 364 (540)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (540)
T Consensus 201 -------------------------------------------------------------------------------- 200 (376)
T KOG1188|consen 201 -------------------------------------------------------------------------------- 200 (376)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccchhhhhhcccccEEEEEecC---CeeEeeeCCCeEEEEeCCCCceEEeeeCC--------------ceEEEEEec-
Q psy18231 365 SIHNSCFQALKEARDSITSVHVSD---HEILTASLDCRIRRYDIRTGNLVTDYVGE--------------PIVDACFTR- 426 (540)
Q Consensus 365 ~~~~~~~~~~~~~~~~v~~l~~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~~~--------------~i~~~~~sp- 426 (540)
...+.....|...|..+.|.. +.+.+-+...+..+|+++.+.....+... .+... .+|
T Consensus 201 ---eDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~~-~~~~ 276 (376)
T KOG1188|consen 201 ---EDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVINE-HSPG 276 (376)
T ss_pred ---hhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhheeec-ccCC
Confidence 112334456778899999987 47888899999999999988765544321 11111 223
Q ss_pred CCcEEEeecC-CCeEEEEecc---c---cchhhhhcc-CcCCcceEEEEecCCCCeEEEeeCCCcEEEEEec
Q psy18231 427 DCQCILTCST-DECLRLFDKA---T---GELLEEYKG-HKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLV 490 (540)
Q Consensus 427 ~~~~l~~~~~-dg~i~i~d~~---~---~~~~~~~~~-~~~~v~~~~~~~s~~~~~l~s~s~dg~i~iwd~~ 490 (540)
+...++.++. -+...++-+. + .+.+..+.+ |..-|..+ .|...+.++.+|++||.+.+|...
T Consensus 277 ~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i--~~~~~~~~l~TGGEDG~l~~Wk~~ 346 (376)
T KOG1188|consen 277 DKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDI--LFDVKNDVLYTGGEDGLLQAWKVE 346 (376)
T ss_pred CcceEEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHH--hhhcccceeeccCCCceEEEEecC
Confidence 4444554444 4555555332 2 345566776 55555656 677888899999999999999953
|
|
| >KOG1538|consensus | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.4e-19 Score=168.07 Aligned_cols=266 Identities=15% Similarity=0.199 Sum_probs=200.8
Q ss_pred Ccceeccccchhhhhhcccccceeeeecccccc---eeeeeecCeEEEEeCCCCCEEEEeeCCCcEEEEcCCCCeeEEEe
Q psy18231 126 HPLLFSLPRTITRILYELPKEWSIRVYRPLTVN---RELFVLSGLMHTRFPVDGSYCLTCGSDKKIKLWNPYRNLLLKTY 202 (540)
Q Consensus 126 ~~~~~s~~~~~~~~~~~~~~~~~i~~~~~~~~~---~~~~h~~~v~~v~~spdg~~lat~~~dg~i~iwd~~~~~~~~~~ 202 (540)
+.+.|.|+++...+ ..+..+.+|++..+. ...+|.+.|.|++|+.||+++|+|+.|..|.+|+.+-... ..+
T Consensus 16 ~d~afkPDGsqL~l----AAg~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~-LkY 90 (1081)
T KOG1538|consen 16 NDIAFKPDGTQLIL----AAGSRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGI-LKY 90 (1081)
T ss_pred heeEECCCCceEEE----ecCCEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEecccccce-eee
Confidence 34555555432221 223457788887764 3467999999999999999999999999999999653332 333
Q ss_pred ecCCcceeEEEEeeCCCeEEEeeCCCeEEEEEcCCCceeEeccccCCceeEEEECCCCCEEEEecCCCcEEEEEecCCCC
Q psy18231 203 GGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSH 282 (540)
Q Consensus 203 ~~h~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~ 282 (540)
.|.+.|.|+.|+|-...|++++-+ ..-+|......... . .....+.+.+|..||++++.|-.||+|.+-+-...+.
T Consensus 91 -SH~D~IQCMsFNP~~h~LasCsLs-dFglWS~~qK~V~K-~-kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~gEek 166 (1081)
T KOG1538|consen 91 -SHNDAIQCMSFNPITHQLASCSLS-DFGLWSPEQKSVSK-H-KSSSRIICCSWTNDGQYLALGMFNGTISIRNKNGEEK 166 (1081)
T ss_pred -ccCCeeeEeecCchHHHhhhcchh-hccccChhhhhHHh-h-hhheeEEEeeecCCCcEEEEeccCceEEeecCCCCcc
Confidence 499999999999999999999863 57789875543221 1 2356789999999999999999999999875433321
Q ss_pred CCcchhhhhHhhhhcCCceeEEEEeecccccccccCceeeEEEeeeecccccceeeeeeccceeEEEeecccceeccccc
Q psy18231 283 HPIQVRCLNEALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVT 362 (540)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (540)
..
T Consensus 167 ~~------------------------------------------------------------------------------ 168 (1081)
T KOG1538|consen 167 VK------------------------------------------------------------------------------ 168 (1081)
T ss_pred eE------------------------------------------------------------------------------
Confidence 11
Q ss_pred ccccccchhhhhhcccccEEEEEecC-------CeeEeeeCCCeEEEEeCCCCceEEeee--CCceEEEEEecCCcEEEe
Q psy18231 363 PISIHNSCFQALKEARDSITSVHVSD-------HEILTASLDCRIRRYDIRTGNLVTDYV--GEPIVDACFTRDCQCILT 433 (540)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~v~~l~~~~-------~~l~~~~~dg~i~iwd~~~~~~~~~~~--~~~i~~~~~sp~~~~l~~ 433 (540)
+....+.+.+|.+++|+| ..+++.....++.+|.+. |+.+..-. +-...|+.+-|+|.+++.
T Consensus 169 --------I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~Ls-G~~Igk~r~L~FdP~CisYf~NGEy~Li 239 (1081)
T KOG1538|consen 169 --------IERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLS-GKQIGKDRALNFDPCCISYFTNGEYILL 239 (1081)
T ss_pred --------EeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEec-ceeecccccCCCCchhheeccCCcEEEE
Confidence 112335678899999987 568888888999999886 44433221 245678899999999999
Q ss_pred ecCCCeEEEEeccccchhhhhccCcCCcceEEEEecCCCCeEEEeeCCCcEEEEEec
Q psy18231 434 CSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLV 490 (540)
Q Consensus 434 ~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~s~~~~~l~s~s~dg~i~iwd~~ 490 (540)
|+.|+.+++|- +.|-.+.++......|+.+ +..|++++++.|..||+|..|++.
T Consensus 240 GGsdk~L~~fT-R~GvrLGTvg~~D~WIWtV--~~~PNsQ~v~~GCqDGTiACyNl~ 293 (1081)
T KOG1538|consen 240 GGSDKQLSLFT-RDGVRLGTVGEQDSWIWTV--QAKPNSQYVVVGCQDGTIACYNLI 293 (1081)
T ss_pred ccCCCceEEEe-ecCeEEeeccccceeEEEE--EEccCCceEEEEEccCeeehhhhH
Confidence 99999999996 5676677776677788888 789999999999999999999874
|
|
| >cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain | Back alignment and domain information |
|---|
Probab=99.83 E-value=8.7e-21 Score=168.51 Aligned_cols=107 Identities=31% Similarity=0.536 Sum_probs=99.7
Q ss_pred ceEEeccCCCCCHHHHHHHHHcCCCEEEeeeeecccccccchhhccccccCCCCCCEEEEEecCChhHHHHHHHHhcC-C
Q psy18231 17 LKHCDSTLWTSKLNFRQLVRSHNVDLCFTPMIIADSFIKSSKARNNEFSTSPEDTPLVVQFASNNHDDFVRATQYVAP-H 95 (540)
Q Consensus 17 ~~~~ap~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~-~ 95 (540)
++++|||+++|++|||++||+||+|++||||+.++.++...+.....+...+++.|+++|+.|+++++++++++.+.+ +
T Consensus 1 ~~~~aPm~~~~~~~fR~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~qi~g~~~~~~~~aa~~~~~aG 80 (231)
T cd02801 1 KLILAPMVGVTDLPFRLLCRRYGADLVYTEMISAKALLRGNRKRLRLLTRNPEERPLIVQLGGSDPETLAEAAKIVEELG 80 (231)
T ss_pred CeEeCCCCCCcCHHHHHHHHHHCCCEEEecCEEEhhhhhcCHHHHHhhccCccCCCEEEEEcCCCHHHHHHHHHHHHhcC
Confidence 479999999999999999999999999999999999999988877777778999999999999999999999998777 9
Q ss_pred CCeEeeccCCCceEEEeccccceecccc
Q psy18231 96 CNGVDLNCGCPQRWAIKEGYGCALLSKQ 123 (540)
Q Consensus 96 ~~~id~~~gc~~~~~~~~g~g~~l~~~~ 123 (540)
++.|++|+|||.......++|+.++.++
T Consensus 81 ~d~ieln~g~p~~~~~~~~~G~~l~~~~ 108 (231)
T cd02801 81 ADGIDLNMGCPSPKVTKGGAGAALLKDP 108 (231)
T ss_pred CCEEEEeCCCCHHHHhCCCeeehhcCCH
Confidence 9999999999999888899999998874
|
Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present. |
| >KOG2110|consensus | Back alignment and domain information |
|---|
Probab=99.82 E-value=4.4e-18 Score=147.73 Aligned_cols=237 Identities=14% Similarity=0.138 Sum_probs=181.8
Q ss_pred CcceeEEEEeeCCCeEEEeeCCCeEEEEEcCCCceeEeccccCCceeEEEECCCCCEEEEecCCC--cEEEEEecCCCCC
Q psy18231 206 AHEVNDATAACDSSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDN--TVMMWDVKSRSHH 283 (540)
Q Consensus 206 ~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg--~i~iwd~~~~~~~ 283 (540)
...+..+.|+.+...|..|+.|| -++++.+.-..........-.|..+-|+. .+++..+.+. .+++.+++.....
T Consensus 5 ~~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k~~~~~~~~~~IvEmLFSS--SLvaiV~~~qpr~Lkv~~~Kk~~~I 81 (391)
T KOG2110|consen 5 KPTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEKCFSKDTEGVSIVEMLFSS--SLVAIVSIKQPRKLKVVHFKKKTTI 81 (391)
T ss_pred CcceeeeeeccceeEEEccCCCc-eeEEecCchHHhhcccCCCeEEEEeeccc--ceeEEEecCCCceEEEEEcccCceE
Confidence 34566677998998899999988 57887766544322223344566667764 4666665543 4777777654310
Q ss_pred CcchhhhhHhhhhcCCceeEEEEeecccccccccCceeeEEEeeeecccccceeeeeeccceeEEEeecccceecccccc
Q psy18231 284 PIQVRCLNEALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTP 363 (540)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (540)
+.
T Consensus 82 Ce------------------------------------------------------------------------------ 83 (391)
T KOG2110|consen 82 CE------------------------------------------------------------------------------ 83 (391)
T ss_pred EE------------------------------------------------------------------------------
Confidence 00
Q ss_pred cccccchhhhhhcccccEEEEEecCCeeEeeeCCCeEEEEeCCCCceEEeeeC---C--ceEEEEEecCCcEEEeec--C
Q psy18231 364 ISIHNSCFQALKEARDSITSVHVSDHEILTASLDCRIRRYDIRTGNLVTDYVG---E--PIVDACFTRDCQCILTCS--T 436 (540)
Q Consensus 364 ~~~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~---~--~i~~~~~sp~~~~l~~~~--~ 436 (540)
......|.++.++.++|++.-.+. |+|||+++.+++.++.. + .+.++++++.+.+++--+ .
T Consensus 84 -----------~~fpt~IL~VrmNr~RLvV~Lee~-IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t 151 (391)
T KOG2110|consen 84 -----------IFFPTSILAVRMNRKRLVVCLEES-IYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTT 151 (391)
T ss_pred -----------EecCCceEEEEEccceEEEEEccc-EEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCC
Confidence 012467889999998888877665 99999999999888764 2 355555555666888633 4
Q ss_pred CCeEEEEeccccchhhhhccCcCCcceEEEEecCCCCeEEEeeCCCc-EEEEEecCCcceeEEEecccceeeeEEEEcCC
Q psy18231 437 DECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGK-IYKWQLVDSSQISTLIHSVGKAVVNSLCSHPT 515 (540)
Q Consensus 437 dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~s~~~~~l~s~s~dg~-i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d 515 (540)
.|.|.+||..+-+.+..+..|.+.+.++ +|+++|.+||++|+.|+ |||+.+.+|+.+.+++...-...|.+++|+||
T Consensus 152 ~GdV~l~d~~nl~~v~~I~aH~~~lAal--afs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~d 229 (391)
T KOG2110|consen 152 SGDVVLFDTINLQPVNTINAHKGPLAAL--AFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPD 229 (391)
T ss_pred CceEEEEEcccceeeeEEEecCCceeEE--EECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCC
Confidence 7999999999999999999999999888 89999999999999998 79999999999999996555677999999999
Q ss_pred CcEEEeec-CCeeEEEEcccccC
Q psy18231 516 RKHIMSAC-GNNVKLWTAEEDYG 537 (540)
Q Consensus 516 ~~~l~s~~-d~~i~iw~~~~~~~ 537 (540)
+++|++++ .++|.++.++....
T Consensus 230 s~~L~~sS~TeTVHiFKL~~~~~ 252 (391)
T KOG2110|consen 230 SQFLAASSNTETVHIFKLEKVSN 252 (391)
T ss_pred CCeEEEecCCCeEEEEEeccccc
Confidence 99999999 99999999986543
|
|
| >KOG0290|consensus | Back alignment and domain information |
|---|
Probab=99.82 E-value=4.6e-18 Score=142.71 Aligned_cols=274 Identities=16% Similarity=0.245 Sum_probs=199.2
Q ss_pred CeEEEEeCC--C-CCEEEEeeC----CCcEEEEcC--CCCeeEEEe-ecCCcceeEEEEeeCCC-----eEEEeeCCCeE
Q psy18231 166 GLMHTRFPV--D-GSYCLTCGS----DKKIKLWNP--YRNLLLKTY-GGHAHEVNDATAACDSS-----QIASGASDKSV 230 (540)
Q Consensus 166 ~v~~v~~sp--d-g~~lat~~~----dg~i~iwd~--~~~~~~~~~-~~h~~~v~~l~~sp~~~-----~l~s~s~dg~i 230 (540)
.+.++.||. + +.+||.|+. .+.|.|-.+ ++++.+..- ..|.-+++.+.|.|+.. +|||++ -.+
T Consensus 46 ~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~fd~~YP~tK~~wiPd~~g~~pdlLATs~--D~L 123 (364)
T KOG0290|consen 46 PLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDANFDHPYPVTKLMWIPDSKGVYPDLLATSS--DFL 123 (364)
T ss_pred ceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccCCCCCCCCccceEecCCccccCcchhhccc--CeE
Confidence 466777773 3 446888865 456666543 344443322 25888999999999763 455554 479
Q ss_pred EEEEcCCCcee----Ee-----ccccCCceeEEEECC-CCCEEEEecCCCcEEEEEecCCCCCCcchhhhhHhhhhcCCc
Q psy18231 231 ILWEVTTGQPV----RR-----WREHASKVTCVKFNE-DSSVVISGSQDNTVMMWDVKSRSHHPIQVRCLNEALKEARDS 300 (540)
Q Consensus 231 ~iwd~~~~~~~----~~-----~~~h~~~v~~~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 300 (540)
|+|.+...+.. .. -..+..++++..|+. +.+++.++|-|-+..|||++++....+.
T Consensus 124 RlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vk-------------- 189 (364)
T KOG0290|consen 124 RLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVK-------------- 189 (364)
T ss_pred EEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeecccccee--------------
Confidence 99998742211 11 124677999999988 7789999999999999999987421111
Q ss_pred eeEEEEeecccccccccCceeeEEEeeeecccccceeeeeeccceeEEEeecccceecccccccccccchhhhhhccccc
Q psy18231 301 ITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEARDS 380 (540)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (540)
..+..|...
T Consensus 190 -----------------------------------------------------------------------TQLIAHDKE 198 (364)
T KOG0290|consen 190 -----------------------------------------------------------------------TQLIAHDKE 198 (364)
T ss_pred -----------------------------------------------------------------------eEEEecCcc
Confidence 145689999
Q ss_pred EEEEEecC---CeeEeeeCCCeEEEEeCCCCceEEeee-----CCceEEEEEec-CCcEEEeecCC-CeEEEEecccc-c
Q psy18231 381 ITSVHVSD---HEILTASLDCRIRRYDIRTGNLVTDYV-----GEPIVDACFTR-DCQCILTCSTD-ECLRLFDKATG-E 449 (540)
Q Consensus 381 v~~l~~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~-----~~~i~~~~~sp-~~~~l~~~~~d-g~i~i~d~~~~-~ 449 (540)
|..++|.. +.+++.+.||++|+||++..+....+. ..+...++|++ |-+++|+-..| ..|.|.|++.. .
T Consensus 199 V~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~t 278 (364)
T KOG0290|consen 199 VYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCT 278 (364)
T ss_pred eeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCc
Confidence 99999987 889999999999999999876544442 24688899988 55677775554 57999999864 6
Q ss_pred hhhhhccCcCCcceEEEEecCCC-CeEEEeeCCCcEEEEEecCCcc------eeEEEecccceeeeEEEEcC-CCcEEEe
Q psy18231 450 LLEEYKGHKSGDFRIECCLDSKD-SQIFCGSSDGKIYKWQLVDSSQ------ISTLIHSVGKAVVNSLCSHP-TRKHIMS 521 (540)
Q Consensus 450 ~~~~~~~~~~~v~~~~~~~s~~~-~~l~s~s~dg~i~iwd~~~~~~------~~~~~~~~~~~~v~~l~~s~-d~~~l~s 521 (540)
++..+++|.+.|..+ +|.|.. ..|++++.|..+.+||+...-. +... ...+.|+.+.|++ ...+++.
T Consensus 279 pva~L~~H~a~VNgI--aWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPilay---~a~~EVNqi~Ws~~~~Dwiai 353 (364)
T KOG0290|consen 279 PVARLRNHQASVNGI--AWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPILAY---TAGGEVNQIQWSSSQPDWIAI 353 (364)
T ss_pred ceehhhcCcccccce--EecCCCCceeeecCCcceEEEEecccccccCCCCchhhh---hccceeeeeeecccCCCEEEE
Confidence 789999999999999 666654 4699999999999999976422 2222 2456799999995 4678888
Q ss_pred ecCCeeEEEE
Q psy18231 522 ACGNNVKLWT 531 (540)
Q Consensus 522 ~~d~~i~iw~ 531 (540)
+.++++.+-.
T Consensus 354 ~~~kkleiLR 363 (364)
T KOG0290|consen 354 CFGKKLEILR 363 (364)
T ss_pred EecCeeeEEe
Confidence 7777766643
|
|
| >KOG2919|consensus | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.3e-18 Score=148.18 Aligned_cols=236 Identities=19% Similarity=0.270 Sum_probs=176.8
Q ss_pred eEEEEeeCCCeEEEeeCCCeEEEEEcCCCc-------e-----eEecc-ccCCceeEEEEC-------CCCCEEEEecCC
Q psy18231 210 NDATAACDSSQIASGASDKSVILWEVTTGQ-------P-----VRRWR-EHASKVTCVKFN-------EDSSVVISGSQD 269 (540)
Q Consensus 210 ~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~-------~-----~~~~~-~h~~~v~~~~~~-------~~~~~l~s~~~d 269 (540)
..+.|+|||..|++-+.|..+++|++...- . ...++ .....|...+|- |+..++++.+.+
T Consensus 53 kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr~ 132 (406)
T KOG2919|consen 53 KGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSRD 132 (406)
T ss_pred ccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeecccc
Confidence 457899999999999999999999985320 0 00111 124567777774 567899999999
Q ss_pred CcEEEEEecCCCCCCcchhhhhHhhhhcCCceeEEEEeecccccccccCceeeEEEeeeecccccceeeeeeccceeEEE
Q psy18231 270 NTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVL 349 (540)
Q Consensus 270 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (540)
.-|++||.-+++.+...
T Consensus 133 ~PIh~wdaftG~lraSy--------------------------------------------------------------- 149 (406)
T KOG2919|consen 133 QPIHLWDAFTGKLRASY--------------------------------------------------------------- 149 (406)
T ss_pred Cceeeeeccccccccch---------------------------------------------------------------
Confidence 99999999998742221
Q ss_pred eecccceecccccccccccchhhhhhccc---ccEEEEEecC-CeeEeeeCCCeEEEEeC-CCCceEEee----e-----
Q psy18231 350 LDFLGSTQIGDVTPISIHNSCFQALKEAR---DSITSVHVSD-HEILTASLDCRIRRYDI-RTGNLVTDY----V----- 415 (540)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~v~~l~~~~-~~l~~~~~dg~i~iwd~-~~~~~~~~~----~----- 415 (540)
..-.|. ....+++|+| ..-+.++....|+++|+ +.|.....+ +
T Consensus 150 -----------------------~~ydh~de~taAhsL~Fs~DGeqlfaGykrcirvFdt~RpGr~c~vy~t~~~~k~gq 206 (406)
T KOG2919|consen 150 -----------------------RAYDHQDEYTAAHSLQFSPDGEQLFAGYKRCIRVFDTSRPGRDCPVYTTVTKGKFGQ 206 (406)
T ss_pred -----------------------hhhhhHHhhhhheeEEecCCCCeEeecccceEEEeeccCCCCCCcchhhhhcccccc
Confidence 111122 2346899999 44555667889999999 555432211 1
Q ss_pred CCceEEEEEec-CCcEEEeecCCCeEEEEeccccchhhhhccCcCCcceEEEEecCCCCeEEEeeC-CCcEEEEEecCC-
Q psy18231 416 GEPIVDACFTR-DCQCILTCSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSS-DGKIYKWQLVDS- 492 (540)
Q Consensus 416 ~~~i~~~~~sp-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~s~~~~~l~s~s~-dg~i~iwd~~~~- 492 (540)
.+-|.+++|+| +.+.++.|+....+-||.-..+.++..+-+|.+.|+.+ +|.++|+.|++|+. |-.|..||++..
T Consensus 207 ~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL--~~~edGn~lfsGaRk~dkIl~WDiR~~~ 284 (406)
T KOG2919|consen 207 KGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHL--QWCEDGNKLFSGARKDDKILCWDIRYSR 284 (406)
T ss_pred cceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeE--EeccCcCeecccccCCCeEEEEeehhcc
Confidence 14588999999 55699999999999999988999999999999999988 89999999999974 678999999864
Q ss_pred cceeEEEecccce-eeeEEEE--cCCCcEEEeec-CCeeEEEEcccc
Q psy18231 493 SQISTLIHSVGKA-VVNSLCS--HPTRKHIMSAC-GNNVKLWTAEED 535 (540)
Q Consensus 493 ~~~~~~~~~~~~~-~v~~l~~--s~d~~~l~s~~-d~~i~iw~~~~~ 535 (540)
.++..+. .|.+ .-..|.| .|++++|++|+ ||.|++||+++-
T Consensus 285 ~pv~~L~--rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~ 329 (406)
T KOG2919|consen 285 DPVYALE--RHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDL 329 (406)
T ss_pred chhhhhh--hhccCccceEEEecCCCCceeeccCCCccEEEEecCCC
Confidence 4566666 5554 3334444 68999999999 999999999863
|
|
| >KOG0649|consensus | Back alignment and domain information |
|---|
Probab=99.82 E-value=6.6e-18 Score=138.12 Aligned_cols=264 Identities=13% Similarity=0.125 Sum_probs=190.4
Q ss_pred CeEEEEeCCCCCEEEEeeCCCcEEEEcCCCC----------eeEEEeecCCcceeEEEEeeCCCeEEEeeCCCeEEEEEc
Q psy18231 166 GLMHTRFPVDGSYCLTCGSDKKIKLWNPYRN----------LLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEV 235 (540)
Q Consensus 166 ~v~~v~~spdg~~lat~~~dg~i~iwd~~~~----------~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~ 235 (540)
.|.+-+++|.+++|++|..+|+|.+..+.+. ..+...++|.++|+.++|. ..+|++|+. |.|+=|..
T Consensus 12 tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~gd-G~V~gw~W 88 (325)
T KOG0649|consen 12 TVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGGD-GLVYGWEW 88 (325)
T ss_pred HHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee--hhheeeccC-ceEEEeee
Confidence 4566789999999999999999999986531 3455568999999999998 456777764 99999988
Q ss_pred CCCce------eEec--ccc-----CCceeEEEECCCCCEEEEecCCCcEEEEEecCCCCCCcchhhhhHhhhhcCCcee
Q psy18231 236 TTGQP------VRRW--REH-----ASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQVRCLNEALKEARDSIT 302 (540)
Q Consensus 236 ~~~~~------~~~~--~~h-----~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (540)
+.... +... ..| -..|+++...|..+-++.++.|+.+..||+++++.
T Consensus 89 ~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i-------------------- 148 (325)
T KOG0649|consen 89 NEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRI-------------------- 148 (325)
T ss_pred hhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEE--------------------
Confidence 64322 1111 112 24689999999877788888899999999999871
Q ss_pred EEEEeecccccccccCceeeEEEeeeecccccceeeeeeccceeEEEeecccceecccccccccccchhhhhhcccccEE
Q psy18231 303 SVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEARDSIT 382 (540)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 382 (540)
.+.+++|.+.|.
T Consensus 149 --------------------------------------------------------------------~r~~rGHtDYvH 160 (325)
T KOG0649|consen 149 --------------------------------------------------------------------QREYRGHTDYVH 160 (325)
T ss_pred --------------------------------------------------------------------EEEEcCCcceee
Confidence 237789999999
Q ss_pred EEEecC--CeeEeeeCCCeEEEEeCCCCceEEeeeC------------CceEEEEEecCCcEEEeecCCCeEEEEecccc
Q psy18231 383 SVHVSD--HEILTASLDCRIRRYDIRTGNLVTDYVG------------EPIVDACFTRDCQCILTCSTDECLRLFDKATG 448 (540)
Q Consensus 383 ~l~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~------------~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~ 448 (540)
++.--. ..+++|++||++|+||.++++.+..+.. ..|.+++ -+..++++|+. ..+.+|.+++.
T Consensus 161 ~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala--~~edWlvCGgG-p~lslwhLrss 237 (325)
T KOG0649|consen 161 SVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALA--VNEDWLVCGGG-PKLSLWHLRSS 237 (325)
T ss_pred eeeecccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEe--ccCceEEecCC-CceeEEeccCC
Confidence 998843 8899999999999999999999887753 2344444 45668887654 57999999999
Q ss_pred chhhhhccCcCCcceEEEEecCCCCeEEEeeCCCcEEEEEecCCcceeEEEecccceeeeEEEEcCC-CcEEEeec-CCe
Q psy18231 449 ELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPT-RKHIMSAC-GNN 526 (540)
Q Consensus 449 ~~~~~~~~~~~~v~~~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d-~~~l~s~~-d~~ 526 (540)
++...|.-. .++..+ .|. ...+++++..+.|.-|.+ .|..-.... .......+..|+-. -++|..++ ...
T Consensus 238 e~t~vfpip-a~v~~v--~F~--~d~vl~~G~g~~v~~~~l-~Gvl~a~ip--~~s~~c~s~s~~~~p~k~~s~ag~s~~ 309 (325)
T KOG0649|consen 238 ESTCVFPIP-ARVHLV--DFV--DDCVLIGGEGNHVQSYTL-NGVLQANIP--VESTACYSASWQTSPIKFISIAGFSNK 309 (325)
T ss_pred CceEEEecc-cceeEe--eee--cceEEEeccccceeeeee-ccEEEEecc--CCccceeeecccCCceEEEEeccccee
Confidence 887776422 233334 444 347888888889999985 344444444 33334555555433 35565666 777
Q ss_pred eEEEE
Q psy18231 527 VKLWT 531 (540)
Q Consensus 527 i~iw~ 531 (540)
+.|+.
T Consensus 310 ~~i~~ 314 (325)
T KOG0649|consen 310 LHILK 314 (325)
T ss_pred eeeee
Confidence 76653
|
|
| >KOG1007|consensus | Back alignment and domain information |
|---|
Probab=99.81 E-value=4.4e-18 Score=142.65 Aligned_cols=264 Identities=23% Similarity=0.306 Sum_probs=189.9
Q ss_pred CCcEEEEcCCCC--ee-EEEeecCCcceeEEEEee-CCCeEEEeeCC-------CeEEEEEcCCC---------ceeEec
Q psy18231 185 DKKIKLWNPYRN--LL-LKTYGGHAHEVNDATAAC-DSSQIASGASD-------KSVILWEVTTG---------QPVRRW 244 (540)
Q Consensus 185 dg~i~iwd~~~~--~~-~~~~~~h~~~v~~l~~sp-~~~~l~s~s~d-------g~i~iwd~~~~---------~~~~~~ 244 (540)
|+.|.+.+++.+ .. -+.|..|.+.|+.++-+| +.+.|+|+..+ -.+.||.+... +++..+
T Consensus 39 dNqVhll~~d~e~s~l~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~L 118 (370)
T KOG1007|consen 39 DNQVHLLRLDSEGSELLSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASL 118 (370)
T ss_pred cceeEEEEecCccchhhhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcC
Confidence 677777665543 22 234667889999999999 45556665442 24789988643 223333
Q ss_pred c-ccCCceeEEEECCCCCEEEEecCCCcEEEEEecCCCCCCcchhhhhHhhhhcCCceeEEEEeecccccccccCceeeE
Q psy18231 245 R-EHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHLSNGLLTKL 323 (540)
Q Consensus 245 ~-~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (540)
. .+-+.|.|+.|.|++..+++-. |..|.+|++.........+
T Consensus 119 dteavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev------------------------------------ 161 (370)
T KOG1007|consen 119 DTEAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEV------------------------------------ 161 (370)
T ss_pred CHHHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheee------------------------------------
Confidence 3 4567999999999999999876 7899999998876311000
Q ss_pred EEeeeecccccceeeeeeccceeEEEeecccceecccccccccccchhhhhhcccccEEEEEecC---CeeEeeeCCCeE
Q psy18231 324 VFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEARDSITSVHVSD---HEILTASLDCRI 400 (540)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~---~~l~~~~~dg~i 400 (540)
....-.++....++-+|+| ...+....|+++
T Consensus 162 ----------------------------------------------~ss~s~e~~~~ftsg~WspHHdgnqv~tt~d~tl 195 (370)
T KOG1007|consen 162 ----------------------------------------------LSSESAEMRHSFTSGAWSPHHDGNQVATTSDSTL 195 (370)
T ss_pred ----------------------------------------------cccccccccceecccccCCCCccceEEEeCCCcE
Confidence 0001112445566777888 344555678999
Q ss_pred EEEeCCCCceEEeee---CCceEEEEEecCCc-EEEeecCCCeEEEEecccc-chhhhhccCcCCcceEEEEecCC-CCe
Q psy18231 401 RRYDIRTGNLVTDYV---GEPIVDACFTRDCQ-CILTCSTDECLRLFDKATG-ELLEEYKGHKSGDFRIECCLDSK-DSQ 474 (540)
Q Consensus 401 ~iwd~~~~~~~~~~~---~~~i~~~~~sp~~~-~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~v~~~~~~~s~~-~~~ 474 (540)
..||+++.+....+. ++.+..+.|.|+.+ +|++++.||.|+|||.+.- .++.++.+|...+++++ |+|. .++
T Consensus 196 ~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VR--fn~~hdqL 273 (370)
T KOG1007|consen 196 QFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVR--FNPEHDQL 273 (370)
T ss_pred EEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEE--ecCccceE
Confidence 999999988766654 57899999999765 5788999999999999864 57899999999999995 5554 467
Q ss_pred EEEeeCCCcEEEEEecCCc-----------------------------ceeEEEecccceeeeEEEEcCCCcEE-Eeec-
Q psy18231 475 IFCGSSDGKIYKWQLVDSS-----------------------------QISTLIHSVGKAVVNSLCSHPTRKHI-MSAC- 523 (540)
Q Consensus 475 l~s~s~dg~i~iwd~~~~~-----------------------------~~~~~~~~~~~~~v~~l~~s~d~~~l-~s~~- 523 (540)
|.+|+.|..|.+|....-. .+.++. .|...|.+++||.-..++ |+-+
T Consensus 274 iLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tyd--ehEDSVY~~aWSsadPWiFASLSY 351 (370)
T KOG1007|consen 274 ILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYD--EHEDSVYALAWSSADPWIFASLSY 351 (370)
T ss_pred EEecCCCceeEEEeccccccccccccccccccCcchhhHHhccccccccccccc--ccccceEEEeeccCCCeeEEEecc
Confidence 8999999999999753211 123444 689999999998766655 5556
Q ss_pred CCeeEEEEcccc
Q psy18231 524 GNNVKLWTAEED 535 (540)
Q Consensus 524 d~~i~iw~~~~~ 535 (540)
||.+.|=+++..
T Consensus 352 DGRviIs~V~r~ 363 (370)
T KOG1007|consen 352 DGRVIISSVPRF 363 (370)
T ss_pred CceEEeecCChh
Confidence 999998777654
|
|
| >KOG1517|consensus | Back alignment and domain information |
|---|
Probab=99.80 E-value=8.4e-18 Score=164.32 Aligned_cols=281 Identities=17% Similarity=0.252 Sum_probs=200.1
Q ss_pred CeEEEEeCCCCCEEEEeeCCCcEEEEcCCCCeeEEEeecC---CcceeEEEEee--CCCeEEEeeCCCeEEEEEcCCC--
Q psy18231 166 GLMHTRFPVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGH---AHEVNDATAAC--DSSQIASGASDKSVILWEVTTG-- 238 (540)
Q Consensus 166 ~v~~v~~spdg~~lat~~~dg~i~iwd~~~~~~~~~~~~h---~~~v~~l~~sp--~~~~l~s~s~dg~i~iwd~~~~-- 238 (540)
+-..+.|+|-...++++...-.|+|||.+.++.+..|..+ ...|+.+.+-. |..++++|+.||.|+||+--..
T Consensus 1066 ~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~ 1145 (1387)
T KOG1517|consen 1066 PPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKW 1145 (1387)
T ss_pred CCceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEeccccccc
Confidence 4677889998889999987889999999999988877543 45788888865 5678999999999999974322
Q ss_pred ---ceeEecc---c----cCCceeEEEECCCCCEEEEecCCCcEEEEEecCCCCCCcchhhhhHhhhhcCCceeEEEEee
Q psy18231 239 ---QPVRRWR---E----HASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLV 308 (540)
Q Consensus 239 ---~~~~~~~---~----h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (540)
+.+.... + ..+.=.-+.|.....+|+++|.-..|+|||........-
T Consensus 1146 ~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~d----------------------- 1202 (1387)
T KOG1517|consen 1146 KKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVAD----------------------- 1202 (1387)
T ss_pred CCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEee-----------------------
Confidence 2222221 1 112224467877666777777788999999977542000
Q ss_pred cccccccccCceeeEEEeeeecccccceeeeeeccceeEEEeecccceecccccccccccchhhhhhcccccEEEEEecC
Q psy18231 309 KSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEARDSITSVHVSD 388 (540)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~ 388 (540)
...+....|+++.-+.
T Consensus 1203 ----------------------------------------------------------------iP~~s~t~vTaLS~~~ 1218 (1387)
T KOG1517|consen 1203 ----------------------------------------------------------------IPYGSSTLVTALSADL 1218 (1387)
T ss_pred ----------------------------------------------------------------cccCCCccceeecccc
Confidence 1111234455555443
Q ss_pred ---CeeEeeeCCCeEEEEeCCCCce---EEeee--C--CceEEEEEecCCcE-EEeecCCCeEEEEeccccchhh--hhc
Q psy18231 389 ---HEILTASLDCRIRRYDIRTGNL---VTDYV--G--EPIVDACFTRDCQC-ILTCSTDECLRLFDKATGELLE--EYK 455 (540)
Q Consensus 389 ---~~l~~~~~dg~i~iwd~~~~~~---~~~~~--~--~~i~~~~~sp~~~~-l~~~~~dg~i~i~d~~~~~~~~--~~~ 455 (540)
+.+++|..||.|++||.+.... +.... . .+|..+.+.+.|-- |++|+.||.|++||++...... ++.
T Consensus 1219 ~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv 1298 (1387)
T KOG1517|consen 1219 VHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIV 1298 (1387)
T ss_pred cCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceee
Confidence 7899999999999999986543 33332 2 34899999886654 9999999999999998742222 222
Q ss_pred cCc--C-CcceEEEEecCCCCeEEEeeCCCcEEEEEecCCcceeEEEec-----ccceeeeEEEEcCCCcEEEeec-CCe
Q psy18231 456 GHK--S-GDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHS-----VGKAVVNSLCSHPTRKHIMSAC-GNN 526 (540)
Q Consensus 456 ~~~--~-~v~~~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~-----~~~~~v~~l~~s~d~~~l~s~~-d~~ 526 (540)
.|. + ..+++ ..+++...+|+|+. +.|+||++ .|+.+..++.. ...+.+.+++|+|-.-+||+|+ |.+
T Consensus 1299 ~~~~yGs~lTal--~VH~hapiiAsGs~-q~ikIy~~-~G~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~ 1374 (1387)
T KOG1517|consen 1299 AHWEYGSALTAL--TVHEHAPIIASGSA-QLIKIYSL-SGEQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADST 1374 (1387)
T ss_pred eccccCccceee--eeccCCCeeeecCc-ceEEEEec-ChhhhcccccCcccccCcCCCcceeeecchhHhhhhccCCce
Confidence 332 2 25555 77888889999998 99999996 45555544411 1335689999999999999999 999
Q ss_pred eEEEEcccccC
Q psy18231 527 VKLWTAEEDYG 537 (540)
Q Consensus 527 i~iw~~~~~~~ 537 (540)
|.||..+++-.
T Consensus 1375 V~iYs~~k~~~ 1385 (1387)
T KOG1517|consen 1375 VSIYSCEKPRL 1385 (1387)
T ss_pred EEEeecCCcCC
Confidence 99999877543
|
|
| >KOG4497|consensus | Back alignment and domain information |
|---|
Probab=99.80 E-value=9.8e-18 Score=143.18 Aligned_cols=309 Identities=12% Similarity=0.140 Sum_probs=201.7
Q ss_pred EEEeCCCCCEEEEeeCCCcEEEEcCCCCeeEEEeecCCcceeEEEEeeCCCeEEEe-eCCCeEEEEEcCCCceeEecccc
Q psy18231 169 HTRFPVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASG-ASDKSVILWEVTTGQPVRRWREH 247 (540)
Q Consensus 169 ~v~~spdg~~lat~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~-s~dg~i~iwd~~~~~~~~~~~~h 247 (540)
-.+|||+|+++|+.+.- .+.|-|.++.+..+.+.. -..|.-+.|..|..+++++ ..|+.|.+|++...+-...+...
T Consensus 13 ~c~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf~c-ldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg 90 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSRY-RLVIRDSETLQLHQLFLC-LDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEG 90 (447)
T ss_pred ceeECCCCCeeeeeeee-EEEEeccchhhHHHHHHH-HHHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEeccC
Confidence 46799999999999855 777889887766554432 4567788999888876654 66889999999998888888888
Q ss_pred CCceeEEEECCCCC-EEEEecCCCcEEEEEecCCCCCCcchhhhhHhhhhcCCceeEEEEeecccccccccCceeeEEEe
Q psy18231 248 ASKVTCVKFNEDSS-VVISGSQDNTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFA 326 (540)
Q Consensus 248 ~~~v~~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (540)
...+..++|+|||+ .|.+...|-.|.+|.+.+.+...+.
T Consensus 91 ~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~---------------------------------------- 130 (447)
T KOG4497|consen 91 QAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLP---------------------------------------- 130 (447)
T ss_pred CCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEec----------------------------------------
Confidence 89999999999995 4556667889999999887631111
Q ss_pred eeecccccceeeeeeccceeEEEeecccc-eecccccccccccchhhhhhcccccEEEEEecCCeeEeeeCCCeEEEEeC
Q psy18231 327 FRCKYLNGLLSGVLMSTQHLMVLLDFLGS-TQIGDVTPISIHNSCFQALKEARDSITSVHVSDHEILTASLDCRIRRYDI 405 (540)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~dg~i~iwd~ 405 (540)
.......+..+..++.......+.. .....+. .......++.+.-..-..+.+.|+|+ +..+.+||-
T Consensus 131 ----~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~-~c~~W~ll~~f~~dT~DltgieWsPd-------g~~laVwd~ 198 (447)
T KOG4497|consen 131 ----HPKTNVKGYAFHPDGQFCAILSRRDCKDYVQIS-SCKAWILLKEFKLDTIDLTGIEWSPD-------GNWLAVWDN 198 (447)
T ss_pred ----ccccCceeEEECCCCceeeeeecccHHHHHHHH-hhHHHHHHHhcCCCcccccCceECCC-------CcEEEEecc
Confidence 0000112222222222222211110 0000000 00011122333334455677888882 234556765
Q ss_pred CCCceEEeeeC-CceEEEEEecCCcEEEeecCCCeEEEEeccccchhhh-------------------------------
Q psy18231 406 RTGNLVTDYVG-EPIVDACFTRDCQCILTCSTDECLRLFDKATGELLEE------------------------------- 453 (540)
Q Consensus 406 ~~~~~~~~~~~-~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~------------------------------- 453 (540)
--.-.+..++. -.+..++|+|.+++|++|+.|+.+|+.+.-+.+...+
T Consensus 199 ~Leykv~aYe~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLs 278 (447)
T KOG4497|consen 199 VLEYKVYAYERGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLS 278 (447)
T ss_pred hhhheeeeeeeccceeEEEeccccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccc
Confidence 43334444443 5788999999999999999999998876533222110
Q ss_pred -----------------------------hcc----CcCCcceEEEEecCCCCeEEEeeC--CCcEEEEEecCCcceeEE
Q psy18231 454 -----------------------------YKG----HKSGDFRIECCLDSKDSQIFCGSS--DGKIYKWQLVDSSQISTL 498 (540)
Q Consensus 454 -----------------------------~~~----~~~~v~~~~~~~s~~~~~l~s~s~--dg~i~iwd~~~~~~~~~~ 498 (540)
++. .+.....-.++|++|..++++-.. -+.+.+||++..+....+
T Consensus 279 f~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avL 358 (447)
T KOG4497|consen 279 FTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVL 358 (447)
T ss_pred cCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechhhhhhhhh
Confidence 000 000111223489999999888753 367999999988887777
Q ss_pred EecccceeeeEEEEcCCCcEEEeec-CCeeEEEEccc
Q psy18231 499 IHSVGKAVVNSLCSHPTRKHIMSAC-GNNVKLWTAEE 534 (540)
Q Consensus 499 ~~~~~~~~v~~l~~s~d~~~l~s~~-d~~i~iw~~~~ 534 (540)
. ...+|....|.|....|+.+. ...+++|....
T Consensus 359 i---Qk~piraf~WdP~~prL~vctg~srLY~W~psg 392 (447)
T KOG4497|consen 359 I---QKHPIRAFEWDPGRPRLVVCTGKSRLYFWAPSG 392 (447)
T ss_pred h---hccceeEEEeCCCCceEEEEcCCceEEEEcCCC
Confidence 5 567899999999998888877 77899998764
|
|
| >KOG1523|consensus | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.3e-17 Score=140.50 Aligned_cols=202 Identities=16% Similarity=0.217 Sum_probs=165.5
Q ss_pred ecCeEEEEeCCCCCEEEEeeCCCcEEEEcCCCC---eeEEEeecCCcceeEEEEeeCCCeEEEeeCCCeEEEEEcCC-C-
Q psy18231 164 LSGLMHTRFPVDGSYCLTCGSDKKIKLWNPYRN---LLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTT-G- 238 (540)
Q Consensus 164 ~~~v~~v~~spdg~~lat~~~dg~i~iwd~~~~---~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~-~- 238 (540)
..+|+|.+|++|+..+|++.....|.||..... +..++++.|...|+.+.|+|..+.|++++.|..-.||...+ +
T Consensus 10 ~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~~ 89 (361)
T KOG1523|consen 10 LEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGGT 89 (361)
T ss_pred cCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCCe
Confidence 478999999999999999999999999987654 57788999999999999999999999999999999999843 3
Q ss_pred -ceeEeccccCCceeEEEECCCCCEEEEecCCCcEEEEEecCCCCCCcchhhhhHhhhhcCCceeEEEEeeccccccccc
Q psy18231 239 -QPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHLSN 317 (540)
Q Consensus 239 -~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (540)
++.-.+..++...+++.|+|.++.+++||.-..|.||-++..+.--+
T Consensus 90 WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWV-------------------------------- 137 (361)
T KOG1523|consen 90 WKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWV-------------------------------- 137 (361)
T ss_pred eccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceeh--------------------------------
Confidence 34445667899999999999999999999999999998876552000
Q ss_pred CceeeEEEeeeecccccceeeeeeccceeEEEeecccceecccccccccccchhhhhhcccccEEEEEecC--CeeEeee
Q psy18231 318 GLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEARDSITSVHVSD--HEILTAS 395 (540)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~--~~l~~~~ 395 (540)
..+.-+.+...|.+++|+| -++++|+
T Consensus 138 ----------------------------------------------------sKhikkPirStv~sldWhpnnVLlaaGs 165 (361)
T KOG1523|consen 138 ----------------------------------------------------SKHIKKPIRSTVTSLDWHPNNVLLAAGS 165 (361)
T ss_pred ----------------------------------------------------hhhhCCccccceeeeeccCCcceecccc
Confidence 1113345678899999999 5678899
Q ss_pred CCCeEEEEeCC------------------CCceEEee--eCCceEEEEEecCCcEEEeecCCCeEEEEeccccc
Q psy18231 396 LDCRIRRYDIR------------------TGNLVTDY--VGEPIVDACFTRDCQCILTCSTDECLRLFDKATGE 449 (540)
Q Consensus 396 ~dg~i~iwd~~------------------~~~~~~~~--~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~ 449 (540)
.|+..+++..- -|+++.++ .++.+..+.|+|+|+.|+-.+.|..+.+-|.....
T Consensus 166 ~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~ 239 (361)
T KOG1523|consen 166 TDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPS 239 (361)
T ss_pred cCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCc
Confidence 99999998532 12233333 34689999999999999999999999999977654
|
|
| >KOG0771|consensus | Back alignment and domain information |
|---|
Probab=99.80 E-value=9.8e-19 Score=154.52 Aligned_cols=198 Identities=20% Similarity=0.212 Sum_probs=151.4
Q ss_pred EEEEeCCCCCEEEEeeCCCcEEEEcCCCCeeEEEeecCCcceeEEEEeeCCCeEEEeeCCCeEEEEEcCCCceeEeccc-
Q psy18231 168 MHTRFPVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPVRRWRE- 246 (540)
Q Consensus 168 ~~v~~spdg~~lat~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~- 246 (540)
.+++|+.+|..|++|+.||++|||++.+...+.....|.+.|.++.|+|||++|++-+.| ..+||+++++..+.....
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~~ 226 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTPF 226 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCCc
Confidence 899999999999999999999999998988888888899999999999999999999999 899999999976665432
Q ss_pred -cCCceeEEEECCCC---C--EEEEecCCCcEEEEEecCCCCCCcchhhhhHhhhhcCCceeEEEEeecccccccccCce
Q psy18231 247 -HASKVTCVKFNEDS---S--VVISGSQDNTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHLSNGLL 320 (540)
Q Consensus 247 -h~~~v~~~~~~~~~---~--~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (540)
-......+.|+.|+ . .++....-+.|+.||+
T Consensus 227 ~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~------------------------------------------- 263 (398)
T KOG0771|consen 227 SKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDI------------------------------------------- 263 (398)
T ss_pred ccchhhhhceecccCCCceEEEEEecCCCCceeEEEe-------------------------------------------
Confidence 22334556666554 1 1111222233333332
Q ss_pred eeEEEeeeecccccceeeeeeccceeEEEeecccceecccccccccccchhhhhhcccccEEEEEecCCeeEeeeCCCeE
Q psy18231 321 TKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEARDSITSVHVSDHEILTASLDCRI 400 (540)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~dg~i 400 (540)
T Consensus 264 -------------------------------------------------------------------------------- 263 (398)
T KOG0771|consen 264 -------------------------------------------------------------------------------- 263 (398)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEeCC-CCceEEeeeC-CceEEEEEecCCcEEEeecCCCeEEEEeccccchhhhh-ccCcCCcceEEEEecCCCCeEEE
Q psy18231 401 RRYDIR-TGNLVTDYVG-EPIVDACFTRDCQCILTCSTDECLRLFDKATGELLEEY-KGHKSGDFRIECCLDSKDSQIFC 477 (540)
Q Consensus 401 ~iwd~~-~~~~~~~~~~-~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~-~~~~~~v~~~~~~~s~~~~~l~s 477 (540)
.+|+-. ..+..+.+.. ..|.+++.|++|++++.|+.||.|.|++..+.+.++.. +.|...|+.+ .|+||.+++++
T Consensus 264 ~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsVai~~~~~lq~~~~vk~aH~~~VT~l--tF~Pdsr~~~s 341 (398)
T KOG0771|consen 264 SLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGL--TFSPDSRYLAS 341 (398)
T ss_pred eeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCcEEEEEeceeeeeEeehhhheeeeeeE--EEcCCcCcccc
Confidence 233321 1111122222 48999999999999999999999999999988776554 5688878877 89999999999
Q ss_pred eeCCCcEEEEEecC
Q psy18231 478 GSSDGKIYKWQLVD 491 (540)
Q Consensus 478 ~s~dg~i~iwd~~~ 491 (540)
.+.|....+..+.-
T Consensus 342 vSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 342 VSSDNEAAVTKLAV 355 (398)
T ss_pred cccCCceeEEEEee
Confidence 99999999888754
|
|
| >KOG1240|consensus | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.9e-17 Score=164.45 Aligned_cols=287 Identities=16% Similarity=0.215 Sum_probs=199.8
Q ss_pred eeeeeecCeEEEEeCCC-CCEEEEeeCCCcEEEEcCCCC-------eeEEEeecCCcceeEEEEeeCCCeEEEeeCCCeE
Q psy18231 159 RELFVLSGLMHTRFPVD-GSYCLTCGSDKKIKLWNPYRN-------LLLKTYGGHAHEVNDATAACDSSQIASGASDKSV 230 (540)
Q Consensus 159 ~~~~h~~~v~~v~~spd-g~~lat~~~dg~i~iwd~~~~-------~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~dg~i 230 (540)
....|...|..++.+++ +.+++|||.||+|++||..+- +...++.-....+.++...+.+..+|.++.||.|
T Consensus 1043 hL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~DG~v 1122 (1431)
T KOG1240|consen 1043 HLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVSTKDGSV 1122 (1431)
T ss_pred hhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEEcCCCeE
Confidence 34558888888888775 499999999999999997542 2233344357789999999999999999999999
Q ss_pred EEEEcCCC--c-----eeEecccc-CC-ceeEEEECC-CCC-EEEEecCCCcEEEEEecCCCCCCcchhhhhHhhhhcCC
Q psy18231 231 ILWEVTTG--Q-----PVRRWREH-AS-KVTCVKFNE-DSS-VVISGSQDNTVMMWDVKSRSHHPIQVRCLNEALKEARD 299 (540)
Q Consensus 231 ~iwd~~~~--~-----~~~~~~~h-~~-~v~~~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 299 (540)
++.+++.. + +......+ .+ .|..-+|.. .+. .++.+..-+.|..||++........
T Consensus 1123 ~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~l------------- 1189 (1431)
T KOG1240|consen 1123 RVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRL------------- 1189 (1431)
T ss_pred EEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhh-------------
Confidence 99998762 1 11112222 22 333344433 333 6778888899999999876521100
Q ss_pred ceeEEEEeecccccccccCceeeEEEeeeecccccceeeeeeccceeEEEeecccceecccccccccccchhhhhhcccc
Q psy18231 300 SITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEARD 379 (540)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (540)
......+
T Consensus 1190 -------------------------------------------------------------------------k~~~~hG 1196 (1431)
T KOG1240|consen 1190 -------------------------------------------------------------------------KNQLRHG 1196 (1431)
T ss_pred -------------------------------------------------------------------------hcCcccc
Confidence 2234467
Q ss_pred cEEEEEecC--CeeEeeeCCCeEEEEeCCCCceEEeeeC---CceEEEEEecCC---cEEEe-ec-CCCeEEEEeccccc
Q psy18231 380 SITSVHVSD--HEILTASLDCRIRRYDIRTGNLVTDYVG---EPIVDACFTRDC---QCILT-CS-TDECLRLFDKATGE 449 (540)
Q Consensus 380 ~v~~l~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~---~~i~~~~~sp~~---~~l~~-~~-~dg~i~i~d~~~~~ 449 (540)
.|++++.+| .++++|+..|.+.+||++-+.++...+. .+|..+...|-. ...++ ++ ..+.|.+|++.+|.
T Consensus 1197 ~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~ 1276 (1431)
T KOG1240|consen 1197 LVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGL 1276 (1431)
T ss_pred ceeEEEecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCc
Confidence 899999999 9999999999999999999999888864 467777776632 34444 44 57889999999886
Q ss_pred hhhhhccC-----------------cCCcceEEEEecCCCCeEEEeeCCCcEEEEEecCCcce-----------------
Q psy18231 450 LLEEYKGH-----------------KSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQI----------------- 495 (540)
Q Consensus 450 ~~~~~~~~-----------------~~~v~~~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~----------------- 495 (540)
+..++... ...+..+.+++...+.++.+|+.|..|+.||....+..
T Consensus 1277 ~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p~~ss~~~~~~s~~~~~~~~s 1356 (1431)
T KOG1240|consen 1277 RQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRPEISSYAVPGPSTSYSTNSES 1356 (1431)
T ss_pred ceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCcccccccccCccccccccchh
Confidence 54444322 12223334455566778999999999999997542211
Q ss_pred ------------eE-------------------E------EecccceeeeEEEEcCC-CcEEEeec-CCeeEEEE
Q psy18231 496 ------------ST-------------------L------IHSVGKAVVNSLCSHPT-RKHIMSAC-GNNVKLWT 531 (540)
Q Consensus 496 ------------~~-------------------~------~~~~~~~~v~~l~~s~d-~~~l~s~~-d~~i~iw~ 531 (540)
.. + ....|..+|+++++... ..+|++++ ||.|+||.
T Consensus 1357 ~~~~~i~~~~~i~e~i~~~~tv~~t~~~~~~~~~~~~~~~ps~~H~d~Itdma~~~~~q~llvs~s~dG~IkiWk 1431 (1431)
T KOG1240|consen 1357 YDLSTIPGSQFIDEFIIYQQTVGLTEALRENQKLRPGPSDPSTYHHDPITDMATLKSEQPLLVSSSRDGVIKIWK 1431 (1431)
T ss_pred ccccccCCCccchhhhhhhhhcCchhhcccccccccCCCCCcccccchhhhhhhhccCccEEEEecCCCeeeecC
Confidence 00 0 00136678888887654 35788888 99999994
|
|
| >KOG1587|consensus | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.4e-17 Score=158.59 Aligned_cols=261 Identities=15% Similarity=0.145 Sum_probs=186.9
Q ss_pred eeeeecccccc---eeeeeecCeEEEEeCC-CCCEEEEeeCCCcEEEEcCCCCee--EEE----eecCCcceeEEEEeeC
Q psy18231 148 SIRVYRPLTVN---RELFVLSGLMHTRFPV-DGSYCLTCGSDKKIKLWNPYRNLL--LKT----YGGHAHEVNDATAACD 217 (540)
Q Consensus 148 ~i~~~~~~~~~---~~~~h~~~v~~v~~sp-dg~~lat~~~dg~i~iwd~~~~~~--~~~----~~~h~~~v~~l~~sp~ 217 (540)
.+.+|+..... ....-...|+|+.|+| +..+||.|..+|.|.+||+..+.. ... ...|..+++.+.|..+
T Consensus 223 ~~~vW~~~~p~~Pe~~~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~ 302 (555)
T KOG1587|consen 223 VLLVWSLKNPNTPELVLESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQN 302 (555)
T ss_pred eEEEEecCCCCCceEEEecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEecc
Confidence 67888876653 3344557899999999 567788888999999999987654 222 2458999999999875
Q ss_pred CCe--EEEeeCCCeEEEEEcCCCceeE------ecc------ccCCceeEEEECC-CCCEEEEecCCCcEEEEEecCCCC
Q psy18231 218 SSQ--IASGASDKSVILWEVTTGQPVR------RWR------EHASKVTCVKFNE-DSSVVISGSQDNTVMMWDVKSRSH 282 (540)
Q Consensus 218 ~~~--l~s~s~dg~i~iwd~~~~~~~~------~~~------~h~~~v~~~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~ 282 (540)
..- +++++.||.|..|+++.-.... ... .-...+++++|.+ +...++.|+++|.|.-=+-.....
T Consensus 303 ~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~ 382 (555)
T KOG1587|consen 303 EHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTP 382 (555)
T ss_pred CCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcc
Confidence 444 9999999999999886543211 111 1234688999988 567899999999876533222221
Q ss_pred CCcchhhhhHhhhhcCCceeEEEEeecccccccccCceeeEEEeeeecccccceeeeeeccceeEEEeecccceeccccc
Q psy18231 283 HPIQVRCLNEALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVT 362 (540)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (540)
....
T Consensus 383 ~~~~---------------------------------------------------------------------------- 386 (555)
T KOG1587|consen 383 APEV---------------------------------------------------------------------------- 386 (555)
T ss_pred cccc----------------------------------------------------------------------------
Confidence 0000
Q ss_pred ccccccchhhhhhcccccEEEEEecC---CeeEeeeCCCeEEEEeCC-CCceEEeeeC--CceEEEEEecCC-cEEEeec
Q psy18231 363 PISIHNSCFQALKEARDSITSVHVSD---HEILTASLDCRIRRYDIR-TGNLVTDYVG--EPIVDACFTRDC-QCILTCS 435 (540)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~v~~l~~~~---~~l~~~~~dg~i~iwd~~-~~~~~~~~~~--~~i~~~~~sp~~-~~l~~~~ 435 (540)
..+.......|.+.|.++.++| ..+++++ |.+++||... ...++..+.. ..+++++|||.. ..++++.
T Consensus 387 ----~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~g-DW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d 461 (555)
T KOG1587|consen 387 ----SYKGHSTFITHIGPVYAVSRNPFYPKNFLSVG-DWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVD 461 (555)
T ss_pred ----cccccccccccCcceEeeecCCCccceeeeec-cceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEc
Confidence 0011224567889999999999 4444544 9999999988 5566665554 469999999965 5778888
Q ss_pred CCCeEEEEecccc--chhhhhccCcCCcceEEEEecCCCCeEEEeeCCCcEEEEEecC
Q psy18231 436 TDECLRLFDKATG--ELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVD 491 (540)
Q Consensus 436 ~dg~i~i~d~~~~--~~~~~~~~~~~~v~~~~~~~s~~~~~l~s~s~dg~i~iwd~~~ 491 (540)
.||.+.+||+... .++.+.+.+......+ .++++|+.|++|...|++.+|++..
T Consensus 462 ~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~--~~s~~g~~lavGd~~G~~~~~~l~~ 517 (555)
T KOG1587|consen 462 GDGNLDIWDLLQDDEEPVLSQKVCSPALTRV--RWSPNGKLLAVGDANGTTHILKLSE 517 (555)
T ss_pred CCCceehhhhhccccCCccccccccccccee--ecCCCCcEEEEecCCCcEEEEEcCc
Confidence 8999999998754 4455555554444444 6888899999999999999999854
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=3.5e-16 Score=147.57 Aligned_cols=261 Identities=9% Similarity=0.114 Sum_probs=168.8
Q ss_pred cccceeeeeccccc-c----eeeeeecCeEEEEeCCCCCEEEEee-CCCcEEEEcCC-CCee--EEEeecCCcceeEEEE
Q psy18231 144 PKEWSIRVYRPLTV-N----RELFVLSGLMHTRFPVDGSYCLTCG-SDKKIKLWNPY-RNLL--LKTYGGHAHEVNDATA 214 (540)
Q Consensus 144 ~~~~~i~~~~~~~~-~----~~~~h~~~v~~v~~spdg~~lat~~-~dg~i~iwd~~-~~~~--~~~~~~h~~~v~~l~~ 214 (540)
..++.|++|+..+. . ....+.+....++++|++++|++++ .++.|.+|++. ++.. +.... ..+....++|
T Consensus 9 ~~~~~I~~~~~~~~g~l~~~~~~~~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~-~~~~p~~i~~ 87 (330)
T PRK11028 9 PESQQIHVWNLNHEGALTLLQVVDVPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESP-LPGSPTHIST 87 (330)
T ss_pred CCCCCEEEEEECCCCceeeeeEEecCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeec-CCCCceEEEE
Confidence 45677888887431 1 2223446788899999999987764 47899999986 3332 22222 3345678999
Q ss_pred eeCCCeEEEeeC-CCeEEEEEcCC-Cc---eeEeccccCCceeEEEECCCCCEEEEec-CCCcEEEEEecCCCCCCcchh
Q psy18231 215 ACDSSQIASGAS-DKSVILWEVTT-GQ---PVRRWREHASKVTCVKFNEDSSVVISGS-QDNTVMMWDVKSRSHHPIQVR 288 (540)
Q Consensus 215 sp~~~~l~s~s~-dg~i~iwd~~~-~~---~~~~~~~h~~~v~~~~~~~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~ 288 (540)
+|++++|++++. ++.|.+|++++ +. .+..+. +......++++|+++++++++ .++.|.+||+.+........
T Consensus 88 ~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~- 165 (330)
T PRK11028 88 DHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQE- 165 (330)
T ss_pred CCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeecc-CCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccC-
Confidence 999999888764 78999999964 32 223232 334567789999998886554 56899999997633100000
Q ss_pred hhhHhhhhcCCceeEEEEeecccccccccCceeeEEEeeeecccccceeeeeeccceeEEEeecccceeccccccccccc
Q psy18231 289 CLNEALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHN 368 (540)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (540)
.
T Consensus 166 ~------------------------------------------------------------------------------- 166 (330)
T PRK11028 166 P------------------------------------------------------------------------------- 166 (330)
T ss_pred C-------------------------------------------------------------------------------
Confidence 0
Q ss_pred chhhhhhcccccEEEEEecC--CeeEeeeC-CCeEEEEeCCC--Cc--eEEeeeC--------CceEEEEEecCCcEEEe
Q psy18231 369 SCFQALKEARDSITSVHVSD--HEILTASL-DCRIRRYDIRT--GN--LVTDYVG--------EPIVDACFTRDCQCILT 433 (540)
Q Consensus 369 ~~~~~~~~~~~~v~~l~~~~--~~l~~~~~-dg~i~iwd~~~--~~--~~~~~~~--------~~i~~~~~sp~~~~l~~ 433 (540)
... .. ........+.|+| ++++++.. ++.|.+||++. ++ .+..+.. .....+.++|+++++++
T Consensus 167 ~~~-~~-~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv 244 (330)
T PRK11028 167 AEV-TT-VEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYA 244 (330)
T ss_pred Cce-ec-CCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEE
Confidence 000 00 0112345678888 56766665 89999999973 32 2333321 12335889999999998
Q ss_pred ecC-CCeEEEEeccccchhhhhccCc---CCcceEEEEecCCCCeEEEeeC-CCcEEEEEec
Q psy18231 434 CST-DECLRLFDKATGELLEEYKGHK---SGDFRIECCLDSKDSQIFCGSS-DGKIYKWQLV 490 (540)
Q Consensus 434 ~~~-dg~i~i~d~~~~~~~~~~~~~~---~~v~~~~~~~s~~~~~l~s~s~-dg~i~iwd~~ 490 (540)
+.. ++.|.+|++.......++..+. .....+ .++|+|++|+++.. +++|.+|++.
T Consensus 245 ~~~~~~~I~v~~i~~~~~~~~~~~~~~~~~~p~~~--~~~~dg~~l~va~~~~~~v~v~~~~ 304 (330)
T PRK11028 245 CDRTASLISVFSVSEDGSVLSFEGHQPTETQPRGF--NIDHSGKYLIAAGQKSHHISVYEID 304 (330)
T ss_pred ecCCCCeEEEEEEeCCCCeEEEeEEEeccccCCce--EECCCCCEEEEEEccCCcEEEEEEc
Confidence 864 7899999986543211222221 122334 89999999988775 8999999875
|
|
| >KOG0649|consensus | Back alignment and domain information |
|---|
Probab=99.78 E-value=5.8e-18 Score=138.48 Aligned_cols=209 Identities=15% Similarity=0.261 Sum_probs=160.1
Q ss_pred cceeEEEEeeCCCeEEEeeCCCeEEEEEcCCC----------ceeEeccccCCceeEEEECCCCCEEEEecCCCcEEEEE
Q psy18231 207 HEVNDATAACDSSQIASGASDKSVILWEVTTG----------QPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWD 276 (540)
Q Consensus 207 ~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~----------~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd 276 (540)
..|.+-+++|.+++|++|+.+|+|-+..+++- ..+...++|.++|+.++|. ..+|++++ ||.|+-|.
T Consensus 11 ~tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~g-dG~V~gw~ 87 (325)
T KOG0649|consen 11 NTVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGG-DGLVYGWE 87 (325)
T ss_pred HHHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee--hhheeecc-CceEEEee
Confidence 34666789999999999999999999998642 2344568999999999998 45777776 59999998
Q ss_pred ecCCCCCCcchhhhhHhhhhcCCceeEEEEeecccccccccCceeeEEEeeeecccccceeeeeeccceeEEEeecccce
Q psy18231 277 VKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGST 356 (540)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (540)
.+.....
T Consensus 88 W~E~~es------------------------------------------------------------------------- 94 (325)
T KOG0649|consen 88 WNEEEES------------------------------------------------------------------------- 94 (325)
T ss_pred ehhhhhh-------------------------------------------------------------------------
Confidence 7654310
Q ss_pred ecccccccccccchhhhhhcccccEEEEEecCCeeEeeeCCCeEEEEeCCCCceEEeeeCCceEEEEEecCCcEEEeecC
Q psy18231 357 QIGDVTPISIHNSCFQALKEARDSITSVHVSDHEILTASLDCRIRRYDIRTGNLVTDYVGEPIVDACFTRDCQCILTCST 436 (540)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~ 436 (540)
.+.=++|.+..........-..|+++...|..+-++.++.
T Consensus 95 ----------------------------------------~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgG 134 (325)
T KOG0649|consen 95 ----------------------------------------LATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGG 134 (325)
T ss_pred ----------------------------------------ccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecC
Confidence 1122345554443333344467999999998888888889
Q ss_pred CCeEEEEeccccchhhhhccCcCCcceEEEEecCCCCeEEEeeCCCcEEEEEecCCcceeEEEecccc--------eeee
Q psy18231 437 DECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGK--------AVVN 508 (540)
Q Consensus 437 dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~--------~~v~ 508 (540)
|+.++-||+++|+..+++++|+..+.++ +--.....+.+|++||++|+||.++++.+..+....|. ..|-
T Consensus 135 D~~~y~~dlE~G~i~r~~rGHtDYvH~v--v~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wig 212 (325)
T KOG0649|consen 135 DGVIYQVDLEDGRIQREYRGHTDYVHSV--VGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIG 212 (325)
T ss_pred CeEEEEEEecCCEEEEEEcCCcceeeee--eecccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeE
Confidence 9999999999999999999999998887 33234457999999999999999999998887633332 2355
Q ss_pred EEEEcCCCcEEEeecCCeeEEEEcccc
Q psy18231 509 SLCSHPTRKHIMSACGNNVKLWTAEED 535 (540)
Q Consensus 509 ~l~~s~d~~~l~s~~d~~i~iw~~~~~ 535 (540)
+++- +..+|+.|+.-.+.+|++...
T Consensus 213 ala~--~edWlvCGgGp~lslwhLrss 237 (325)
T KOG0649|consen 213 ALAV--NEDWLVCGGGPKLSLWHLRSS 237 (325)
T ss_pred EEec--cCceEEecCCCceeEEeccCC
Confidence 5554 567899888788999998764
|
|
| >KOG1524|consensus | Back alignment and domain information |
|---|
Probab=99.78 E-value=2e-17 Score=150.26 Aligned_cols=257 Identities=9% Similarity=0.121 Sum_probs=182.7
Q ss_pred eeecCeEEEEeCCCCCEEEEeeCCCcEEEEcCCCCeeEEEeecCCcceeE-EEEee-------CCCeEEEeeCCCeEEEE
Q psy18231 162 FVLSGLMHTRFPVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVND-ATAAC-------DSSQIASGASDKSVILW 233 (540)
Q Consensus 162 ~h~~~v~~v~~spdg~~lat~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~-l~~sp-------~~~~l~s~s~dg~i~iw 233 (540)
.|...|.|+.|+.+...+.+++ |..+.+|.-.+......+.-...-|.. +..-+ ....++.++.||.+.|.
T Consensus 12 r~~e~vc~v~w~~~eei~~~~d-Dh~~~~~~~~~~~s~~~~~~p~df~pt~~h~~~rs~~~g~~~d~~~i~s~DGkf~il 90 (737)
T KOG1524|consen 12 RNSEKVCCVDWSSNEEIYFVSD-DHQIFKWSDVSRDSVEVAKLPDDFVPTDMHLGGRSSGGGKGSDTLLICSNDGRFVIL 90 (737)
T ss_pred ccceeEEeecccccceEEEecc-CceEEEeecccchhhhhhhCCcccCCccccccccccCCCCCcceEEEEcCCceEEEe
Confidence 4666677999998887777666 555555543332222222111111111 11111 23458889999999998
Q ss_pred EcCCCceeEeccccCCceeEEEECCCCCEEEEecCCCcEEEEEecCCCCCCcchhhhhHhhhhcCCceeEEEEeeccccc
Q psy18231 234 EVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKN 313 (540)
Q Consensus 234 d~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (540)
+ +.++.-..+..|.+.+.+-.|+|||.-|+++++||.|++|.-...-
T Consensus 91 ~-k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsGML-------------------------------- 137 (737)
T KOG1524|consen 91 N-KSARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSGML-------------------------------- 137 (737)
T ss_pred c-ccchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEeccchH--------------------------------
Confidence 7 4677777888999999999999999999999999999999743321
Q ss_pred ccccCceeeEEEeeeecccccceeeeeeccceeEEEeecccceecccccccccccchhhhhhcccccEEEEEecC---Ce
Q psy18231 314 HLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEARDSITSVHVSD---HE 390 (540)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~---~~ 390 (540)
..++.....+|.|++|.| +.
T Consensus 138 ---------------------------------------------------------RStl~Q~~~~v~c~~W~p~S~~v 160 (737)
T KOG1524|consen 138 ---------------------------------------------------------RSTVVQNEESIRCARWAPNSNSI 160 (737)
T ss_pred ---------------------------------------------------------HHHHhhcCceeEEEEECCCCCce
Confidence 113445567899999998 33
Q ss_pred eEeeeCCCeEEEEeCCCCceEEee--eCCceEEEEEecCCcEEEeecCCCeEEEEeccccchhhhhccCcCCcceEEEEe
Q psy18231 391 ILTASLDCRIRRYDIRTGNLVTDY--VGEPIVDACFTRDCQCILTCSTDECLRLFDKATGELLEEYKGHKSGDFRIECCL 468 (540)
Q Consensus 391 l~~~~~dg~i~iwd~~~~~~~~~~--~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~ 468 (540)
+++ ..+.+.|=.+.....+... +.+-|.++.|++..+++++|++|-..++||. .|+.+..-..|.-+|+++ +|
T Consensus 161 l~c--~g~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~-~G~~Lf~S~~~ey~ITSv--a~ 235 (737)
T KOG1524|consen 161 VFC--QGGHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDA-QGANLFTSAAEEYAITSV--AF 235 (737)
T ss_pred EEe--cCCeEEEeecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeecc-cCcccccCChhccceeee--ee
Confidence 443 3455666555544444444 4467999999999999999999999999996 577788888899999999 89
Q ss_pred cCCCCeEEEeeCCCcEEEEEecCCcceeEEEecccceeeeEEEEcCCCcEEEeec-CCeeEE
Q psy18231 469 DSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC-GNNVKL 529 (540)
Q Consensus 469 s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~-d~~i~i 529 (540)
.|+ +.++.+|. ++++ +.. ...+.|..++||+||..++.|. .|.+.+
T Consensus 236 npd-~~~~v~S~-nt~R------------~~~-p~~GSifnlsWS~DGTQ~a~gt~~G~v~~ 282 (737)
T KOG1524|consen 236 NPE-KDYLLWSY-NTAR------------FSS-PRVGSIFNLSWSADGTQATCGTSTGQLIV 282 (737)
T ss_pred ccc-cceeeeee-eeee------------ecC-CCccceEEEEEcCCCceeeccccCceEEE
Confidence 999 66666664 3344 221 4567899999999999999988 776543
|
|
| >KOG1523|consensus | Back alignment and domain information |
|---|
Probab=99.77 E-value=9.2e-17 Score=136.91 Aligned_cols=233 Identities=15% Similarity=0.179 Sum_probs=180.9
Q ss_pred eecCCcceeEEEEeeCCCeEEEeeCCCeEEEEEcCCCc---eeEeccccCCceeEEEECCCCCEEEEecCCCcEEEEEec
Q psy18231 202 YGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQ---PVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVK 278 (540)
Q Consensus 202 ~~~h~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~---~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~ 278 (540)
+.--..+|+|.+|++|+..+|.+-.+..|.||.....+ ..++++.|...|+.+.|+|..+.|++++.|..-.+|...
T Consensus 6 ~~~~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~ 85 (361)
T KOG1523|consen 6 FHRLLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQP 85 (361)
T ss_pred eeeccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccC
Confidence 33346789999999999999999999999999987654 677899999999999999999999999999999999984
Q ss_pred -CCCCCCcchhhhhHhhhhcCCceeEEEEeecccccccccCceeeEEEeeeecccccceeeeeeccceeEEEeeccccee
Q psy18231 279 -SRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQ 357 (540)
Q Consensus 279 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (540)
.++-.+..
T Consensus 86 ~~~~Wkptl----------------------------------------------------------------------- 94 (361)
T KOG1523|consen 86 SGGTWKPTL----------------------------------------------------------------------- 94 (361)
T ss_pred CCCeeccce-----------------------------------------------------------------------
Confidence 33322222
Q ss_pred cccccccccccchhhhhhcccccEEEEEecC--CeeEeeeCCCeEEEEeCCCCce------EEeeeCCceEEEEEecCCc
Q psy18231 358 IGDVTPISIHNSCFQALKEARDSITSVHVSD--HEILTASLDCRIRRYDIRTGNL------VTDYVGEPIVDACFTRDCQ 429 (540)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~--~~l~~~~~dg~i~iwd~~~~~~------~~~~~~~~i~~~~~sp~~~ 429 (540)
.+..++...+++.|+| +.+++|+....|.+|-.+..+. +..-....|+++.|+|++-
T Consensus 95 ---------------vLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnV 159 (361)
T KOG1523|consen 95 ---------------VLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNV 159 (361)
T ss_pred ---------------eEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcc
Confidence 5567789999999999 8999999999999998775432 3333346799999999999
Q ss_pred EEEeecCCCeEEEEecc-----c-------------cchhhhhccCcCCcceEEEEecCCCCeEEEeeCCCcEEEEEecC
Q psy18231 430 CILTCSTDECLRLFDKA-----T-------------GELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVD 491 (540)
Q Consensus 430 ~l~~~~~dg~i~i~d~~-----~-------------~~~~~~~~~~~~~v~~~~~~~s~~~~~l~s~s~dg~i~iwd~~~ 491 (540)
+|++|+.|+..++|..- + |+.+.++....+.+..+ .|+|+|..|+-.+.|.++.+=|...
T Consensus 160 LlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v--~fs~sG~~lawv~Hds~v~~~da~~ 237 (361)
T KOG1523|consen 160 LLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGV--LFSPSGNRLAWVGHDSTVSFVDAAG 237 (361)
T ss_pred eecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeee--EeCCCCCEeeEecCCCceEEeecCC
Confidence 99999999999999642 1 23455555455566666 8999999999999999999999766
Q ss_pred Cc-ceeEEEecccceeeeEEEEcCCCcEEEeecC
Q psy18231 492 SS-QISTLIHSVGKAVVNSLCSHPTRKHIMSACG 524 (540)
Q Consensus 492 ~~-~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~d 524 (540)
.. .+..+. ...-+..++.|-.+...+++|.|
T Consensus 238 p~~~v~~~~--~~~lP~ls~~~ise~~vv~ag~~ 269 (361)
T KOG1523|consen 238 PSERVQSVA--TAQLPLLSVSWISENSVVAAGYD 269 (361)
T ss_pred Cchhccchh--hccCCceeeEeecCCceeecCCC
Confidence 54 344443 22366777777655444433334
|
|
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.4e-17 Score=160.20 Aligned_cols=230 Identities=16% Similarity=0.114 Sum_probs=161.0
Q ss_pred CCcEEEEcCCCCeeEEEeecCCcceeEEEEeeCCCeEEEeeCC---CeEEEEEcCCCce--eEeccccCCceeEEEECCC
Q psy18231 185 DKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASD---KSVILWEVTTGQP--VRRWREHASKVTCVKFNED 259 (540)
Q Consensus 185 dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~d---g~i~iwd~~~~~~--~~~~~~h~~~v~~~~~~~~ 259 (540)
+..|.+||..... ...+..|...+.+.+|+|||+.|+.++.+ ..|.+||+.+++. +..+.+| ....+|+||
T Consensus 183 ~~~i~i~d~dg~~-~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~---~~~~~wSPD 258 (429)
T PRK01742 183 PYEVRVADYDGFN-QFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGH---NGAPAFSPD 258 (429)
T ss_pred eEEEEEECCCCCC-ceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCc---cCceeECCC
Confidence 4789999975544 55677788899999999999999987654 4799999988754 3333333 346899999
Q ss_pred CCEEEEec-CCCcEEEEEec--CCCCCCcchhhhhHhhhhcCCceeEEEEeecccccccccCceeeEEEeeeecccccce
Q psy18231 260 SSVVISGS-QDNTVMMWDVK--SRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLL 336 (540)
Q Consensus 260 ~~~l~s~~-~dg~i~iwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (540)
|+.|+.++ .+|.+.||.+. ++..
T Consensus 259 G~~La~~~~~~g~~~Iy~~d~~~~~~------------------------------------------------------ 284 (429)
T PRK01742 259 GSRLAFASSKDGVLNIYVMGANGGTP------------------------------------------------------ 284 (429)
T ss_pred CCEEEEEEecCCcEEEEEEECCCCCe------------------------------------------------------
Confidence 99888764 68877766543 3321
Q ss_pred eeeeeccceeEEEeecccceecccccccccccchhhhhhcccccEEEEEecC--CeeE-eeeCCCeEEEEeCCCC-ceEE
Q psy18231 337 SGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEARDSITSVHVSD--HEIL-TASLDCRIRRYDIRTG-NLVT 412 (540)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~--~~l~-~~~~dg~i~iwd~~~~-~~~~ 412 (540)
..+..+...+....|+| +.++ ++..+|...+|+++.. ....
T Consensus 285 -----------------------------------~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~ 329 (429)
T PRK01742 285 -----------------------------------SQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGAS 329 (429)
T ss_pred -----------------------------------EeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeE
Confidence 01223344566788888 4455 4446788888876532 2222
Q ss_pred eeeCCceEEEEEecCCcEEEeecCCCeEEEEeccccchhhhhccCcCCcceEEEEecCCCCeEEEeeCCCcEEEEEec--
Q psy18231 413 DYVGEPIVDACFTRDCQCILTCSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLV-- 490 (540)
Q Consensus 413 ~~~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~s~~~~~l~s~s~dg~i~iwd~~-- 490 (540)
.+.... ....|+|||++|+..+.++ +.+||+.+++.......+ ..... .|+|||++|+.++.++.+.+|++.
T Consensus 330 ~l~~~~-~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~lt~~~--~~~~~--~~sPdG~~i~~~s~~g~~~~l~~~~~ 403 (429)
T PRK01742 330 LVGGRG-YSAQISADGKTLVMINGDN-VVKQDLTSGSTEVLSSTF--LDESP--SISPNGIMIIYSSTQGLGKVLQLVSA 403 (429)
T ss_pred EecCCC-CCccCCCCCCEEEEEcCCC-EEEEECCCCCeEEecCCC--CCCCc--eECCCCCEEEEEEcCCCceEEEEEEC
Confidence 222222 5678999999998887765 566999887643222222 12233 799999999999999999988863
Q ss_pred CCcceeEEEecccceeeeEEEEcCC
Q psy18231 491 DSSQISTLIHSVGKAVVNSLCSHPT 515 (540)
Q Consensus 491 ~~~~~~~~~~~~~~~~v~~l~~s~d 515 (540)
+++.+..+. .|.+.+...+|||-
T Consensus 404 ~G~~~~~l~--~~~g~~~~p~wsp~ 426 (429)
T PRK01742 404 DGRFKARLP--GSDGQVKFPAWSPY 426 (429)
T ss_pred CCCceEEcc--CCCCCCCCcccCCC
Confidence 688888887 78888999999984
|
|
| >KOG1963|consensus | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.3e-16 Score=152.14 Aligned_cols=283 Identities=14% Similarity=0.192 Sum_probs=194.6
Q ss_pred EEeCCCCCEEEEeeCCCcEEEEcCCCCeeEEEeecCCcceeEEEEeeCC---CeEEEeeCCCeEEEEEcCCCceeEeccc
Q psy18231 170 TRFPVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDS---SQIASGASDKSVILWEVTTGQPVRRWRE 246 (540)
Q Consensus 170 v~~spdg~~lat~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~---~~l~s~s~dg~i~iwd~~~~~~~~~~~~ 246 (540)
-.||+|+++++... +..|.||...++.++..+.+|..+++++.+.|.. .++.+++.||+|++||...+..+.++..
T Consensus 22 avfSnD~k~l~~~~-~~~V~VyS~~Tg~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Llkt~~~ 100 (792)
T KOG1963|consen 22 AVFSNDAKFLFLCT-GNFVKVYSTATGECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGELLKTFDN 100 (792)
T ss_pred cccccCCcEEEEee-CCEEEEEecchHhhhhhcccccCccceeeecCCCccceEEEEEecCccEEEecCCCcEEEEEEec
Confidence 35899999988766 6799999999999999999999999999998854 4678999999999999999999988754
Q ss_pred cCCceeEEEECC---CCCEEEEecCCCcEEEEEecCCCCCCcchhhhhHhhhhcCCceeEEEEeecccccccccCceeeE
Q psy18231 247 HASKVTCVKFNE---DSSVVISGSQDNTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHLSNGLLTKL 323 (540)
Q Consensus 247 h~~~v~~~~~~~---~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (540)
..++..+.+.| +...++..+.+. ..+......+. ..+
T Consensus 101 -~~~v~~~~~~~~~a~~s~~~~~s~~~-~~~~~~~s~~~-~~q------------------------------------- 140 (792)
T KOG1963|consen 101 -NLPVHALVYKPAQADISANVYVSVED-YSILTTFSKKL-SKQ------------------------------------- 140 (792)
T ss_pred -CCceeEEEechhHhCccceeEeeccc-ceeeeeccccc-ccc-------------------------------------
Confidence 34455555533 111222122111 11111111110 000
Q ss_pred EEeeeecccccceeeeeeccceeEEEeecccceecccccccccccchhhhhhcccccEEEEEecC-CeeEeeeCCCeEEE
Q psy18231 324 VFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEARDSITSVHVSD-HEILTASLDCRIRR 402 (540)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~-~~l~~~~~dg~i~i 402 (540)
.....+. .........+..+.. -.++..++ ..+.....+..+.+
T Consensus 141 --------------------~~~~~~~--------------t~~~~~~d~~~~~~~-~~~I~~~~~ge~~~i~~~~~~~~ 185 (792)
T KOG1963|consen 141 --------------------SSRFVLA--------------TFDSAKGDFLKEHQE-PKSIVDNNSGEFKGIVHMCKIHI 185 (792)
T ss_pred --------------------eeeeEee--------------eccccchhhhhhhcC-CccEEEcCCceEEEEEEeeeEEE
Confidence 0000000 000000112222222 34566666 55555566677899
Q ss_pred EeCCCCceEEee------eCCceEEEEEecCCcEEEeecCCCeEEEEeccc--c--chhhhhccCcCCcceEEEEecCCC
Q psy18231 403 YDIRTGNLVTDY------VGEPIVDACFTRDCQCILTCSTDECLRLFDKAT--G--ELLEEYKGHKSGDFRIECCLDSKD 472 (540)
Q Consensus 403 wd~~~~~~~~~~------~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~--~--~~~~~~~~~~~~v~~~~~~~s~~~ 472 (540)
|+..+....... +...+++.++||+++++++|..||.|.+|.--. . .....+.-|...|.++ +|+++|
T Consensus 186 ~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L--~fS~~G 263 (792)
T KOG1963|consen 186 YFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSL--SFSSDG 263 (792)
T ss_pred EEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEeccccccee--EEecCC
Confidence 998875511111 113479999999999999999999999996432 1 2345667788899988 899999
Q ss_pred CeEEEeeCCCcEEEEEecCCcceeEEEecccceeeeEEEEcCCCcEEEeec-CCeeEEEEcc
Q psy18231 473 SQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC-GNNVKLWTAE 533 (540)
Q Consensus 473 ~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~-d~~i~iw~~~ 533 (540)
.+|++|+..|.+.+|.+.+++ .+-+. .-.++|..+.+|||+.+.+... |+.|.+-...
T Consensus 264 ~~LlSGG~E~VLv~Wq~~T~~-kqfLP--RLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~ 322 (792)
T KOG1963|consen 264 AYLLSGGREGVLVLWQLETGK-KQFLP--RLGSPILHIVVSPDSDLYSLVLEDNQIHLIKAS 322 (792)
T ss_pred ceEeecccceEEEEEeecCCC-ccccc--ccCCeeEEEEEcCCCCeEEEEecCceEEEEecc
Confidence 999999999999999999988 34444 5678999999999999988888 9999887764
|
|
| >KOG4227|consensus | Back alignment and domain information |
|---|
Probab=99.77 E-value=8e-17 Score=140.73 Aligned_cols=250 Identities=13% Similarity=0.175 Sum_probs=182.1
Q ss_pred EEEeecCCcceeEEEEeeCCCeEEEeeCCCeEEEEEcCC------CceeEecc-ccCCceeEEEECCCCCEEEEecCCCc
Q psy18231 199 LKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTT------GQPVRRWR-EHASKVTCVKFNEDSSVVISGSQDNT 271 (540)
Q Consensus 199 ~~~~~~h~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~------~~~~~~~~-~h~~~v~~~~~~~~~~~l~s~~~dg~ 271 (540)
.+.+.+|.+.|.++.|+.++++|++|+.|..+++|+++. .+++.... .|.+.|.|++|.....++++|+.+++
T Consensus 49 qKD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~ 128 (609)
T KOG4227|consen 49 QKDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGT 128 (609)
T ss_pred hhhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcce
Confidence 344578999999999999999999999999999999853 35565543 45689999999998899999999999
Q ss_pred EEEEEecCCCCCCcchhhhhHhhhhcCCceeEEEEeecccccccccCceeeEEEeeeecccccceeeeeeccceeEEEee
Q psy18231 272 VMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLD 351 (540)
Q Consensus 272 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (540)
|...|+++.+..-+.
T Consensus 129 VI~HDiEt~qsi~V~----------------------------------------------------------------- 143 (609)
T KOG4227|consen 129 VIKHDIETKQSIYVA----------------------------------------------------------------- 143 (609)
T ss_pred eEeeecccceeeeee-----------------------------------------------------------------
Confidence 999999987621000
Q ss_pred cccceecccccccccccchhhhhhcccccEEEEEecC--CeeEeeeCCCeEEEEeCCCCce-EEee----eCCceEEEEE
Q psy18231 352 FLGSTQIGDVTPISIHNSCFQALKEARDSITSVHVSD--HEILTASLDCRIRRYDIRTGNL-VTDY----VGEPIVDACF 424 (540)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~--~~l~~~~~dg~i~iwd~~~~~~-~~~~----~~~~i~~~~~ 424 (540)
......+.|+.+..+| +.+++.+.++.|.+||.+..+. ..-+ .+.....+.|
T Consensus 144 ---------------------~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F 202 (609)
T KOG4227|consen 144 ---------------------NENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEF 202 (609)
T ss_pred ---------------------cccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeee
Confidence 1122345889999999 8999999999999999987652 2111 2357889999
Q ss_pred ecC-CcEEEeecCCCeEEEEeccccc-hhhhhcc---CcCCc-ceEEEEecCCCCeEEEeeCCCcEEEEEecCCcc-eeE
Q psy18231 425 TRD-CQCILTCSTDECLRLFDKATGE-LLEEYKG---HKSGD-FRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQ-IST 497 (540)
Q Consensus 425 sp~-~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~---~~~~v-~~~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~-~~~ 497 (540)
+|. ..+|++.+..+-+-+||.+..+ .+....+ -.... .-+..-|+|+|..|.+--....-.+||+.+.++ +.+
T Consensus 203 ~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k 282 (609)
T KOG4227|consen 203 HPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVLK 282 (609)
T ss_pred cCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccceeEe
Confidence 994 5678888888999999988654 2322221 11111 112336999999988877666667888876444 233
Q ss_pred EEe-c---ccceeeeEEEEcCCCcEEEeec-CCeeEEEEcccc
Q psy18231 498 LIH-S---VGKAVVNSLCSHPTRKHIMSAC-GNNVKLWTAEED 535 (540)
Q Consensus 498 ~~~-~---~~~~~v~~l~~s~d~~~l~s~~-d~~i~iw~~~~~ 535 (540)
+.. + .....+.+++|..|-. +++|+ +-.|.+|.+...
T Consensus 283 ~D~N~~GY~N~~T~KS~~F~~D~~-v~tGSD~~~i~~WklP~~ 324 (609)
T KOG4227|consen 283 SDHNPNGYCNIKTIKSMTFIDDYT-VATGSDHWGIHIWKLPRA 324 (609)
T ss_pred ccCCCCcceeeeeeeeeeeeccee-eeccCcccceEEEecCCC
Confidence 320 0 0123578889986654 88999 889999999754
|
|
| >KOG0644|consensus | Back alignment and domain information |
|---|
Probab=99.76 E-value=2e-18 Score=164.45 Aligned_cols=287 Identities=17% Similarity=0.191 Sum_probs=215.4
Q ss_pred eecccccceeeeeecCeEEEEeCCCCCEEEEeeC----CCcEEEEc-----CCCCeeEEEeecCCcceeEEEEeeCCCeE
Q psy18231 151 VYRPLTVNRELFVLSGLMHTRFPVDGSYCLTCGS----DKKIKLWN-----PYRNLLLKTYGGHAHEVNDATAACDSSQI 221 (540)
Q Consensus 151 ~~~~~~~~~~~~h~~~v~~v~~spdg~~lat~~~----dg~i~iwd-----~~~~~~~~~~~~h~~~v~~l~~sp~~~~l 221 (540)
.|..........|...|..+.+..-|..+.---. ...-+... ++..+.++.+.+|...|+|+.|...|.++
T Consensus 126 ~~~~s~~~~~h~~~~~~~~~sl~s~~~~~~~h~~a~~i~~at~~~akPgtmvqkmk~ikrLlgH~naVyca~fDrtg~~I 205 (1113)
T KOG0644|consen 126 VWKGSAFRWPHMHADQVRGVSLRSIGGGFEIHHRAPSIGCATFSIAKPGTMVQKMKNIKRLLGHRNAVYCAIFDRTGRYI 205 (1113)
T ss_pred cccccccccccccCcccccceeccCCcchhhhhcCcccccceeeecCcHHHHHHHHHHHHHHhhhhheeeeeeccccceE
Confidence 5665555666678888888877653322221000 00011111 11224456678999999999999999999
Q ss_pred EEeeCCCeEEEEEcCCCceeEeccccCCceeEEEECCCCCEEEEecCCCcEEEEEecCCCCCCcchhhhhHhhhhcCCce
Q psy18231 222 ASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQVRCLNEALKEARDSI 301 (540)
Q Consensus 222 ~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (540)
++|+.|..++||..+++.++....+|.+.|+.++.+.+...++++|.|..|++|.+.++.
T Consensus 206 itgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~~-------------------- 265 (1113)
T KOG0644|consen 206 ITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPDGA-------------------- 265 (1113)
T ss_pred eecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEecCCCc--------------------
Confidence 999999999999999999999999999999999999988999999999999999998876
Q ss_pred eEEEEeecccccccccCceeeEEEeeeecccccceeeeeeccceeEEEeecccceecccccccccccchhhhhhcccccE
Q psy18231 302 TSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEARDSI 381 (540)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 381 (540)
++..+.+|.+.|
T Consensus 266 --------------------------------------------------------------------pvsvLrghtgav 277 (1113)
T KOG0644|consen 266 --------------------------------------------------------------------PVSVLRGHTGAV 277 (1113)
T ss_pred --------------------------------------------------------------------hHHHHhccccce
Confidence 344788999999
Q ss_pred EEEEecCCeeEeeeCCCeEEEEeCCCCceEEe-----e-eCCceEEEEEecCCcEEEeecCCCeEEEEeccccchhhhhc
Q psy18231 382 TSVHVSDHEILTASLDCRIRRYDIRTGNLVTD-----Y-VGEPIVDACFTRDCQCILTCSTDECLRLFDKATGELLEEYK 455 (540)
Q Consensus 382 ~~l~~~~~~l~~~~~dg~i~iwd~~~~~~~~~-----~-~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~ 455 (540)
++++|+|.. +.+.||++++||.+-.-.+.. + .+.-+.++.|-.++..+++++.|+.-..|.+... .
T Consensus 278 taiafsP~~--sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l------~ 349 (1113)
T KOG0644|consen 278 TAIAFSPRA--SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSRDGEARNHEFEQL------A 349 (1113)
T ss_pred eeeccCccc--cCCCCCceEeccccccccccCCCCCCcccccceeeeeccccccccccccCCcccccchhhHh------h
Confidence 999999943 788999999999882111111 1 1245777888888899999999999888875422 2
Q ss_pred cCcCCcceEEEEecCC-CCeEEEeeCCCcEEEEEecCCcceeEEEecccceeeeEEEEcCCCcEEE-eec-CCeeEEEEc
Q psy18231 456 GHKSGDFRIECCLDSK-DSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIM-SAC-GNNVKLWTA 532 (540)
Q Consensus 456 ~~~~~v~~~~~~~s~~-~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~-s~~-d~~i~iw~~ 532 (540)
.+...+..+ .++.+ ..+.+++-.+..+.+|++.+|.....+. +|...+..+.++|-...++ +++ ||...|||+
T Consensus 350 ~~~~~lif~--t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~--ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi 425 (1113)
T KOG0644|consen 350 WRSNLLIFV--TRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLM--GHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDI 425 (1113)
T ss_pred hhccceEEE--eccccccccceeeeeeeEeeeeecccchhhhhhc--ccccceeeeeecCCCcHhhhhccCCCceEeeec
Confidence 222221111 22222 2467778888899999999999999998 8999999999999776554 566 999999999
Q ss_pred ccccC
Q psy18231 533 EEDYG 537 (540)
Q Consensus 533 ~~~~~ 537 (540)
-.+..
T Consensus 426 ~eg~p 430 (1113)
T KOG0644|consen 426 WEGIP 430 (1113)
T ss_pred ccCCc
Confidence 77643
|
|
| >KOG1240|consensus | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.8e-16 Score=157.62 Aligned_cols=265 Identities=14% Similarity=0.202 Sum_probs=185.3
Q ss_pred EcCCCCeeEEEeecCCcceeEEEEeeCC-CeEEEeeCCCeEEEEEcCCC-------ceeEeccccCCceeEEEECCCCCE
Q psy18231 191 WNPYRNLLLKTYGGHAHEVNDATAACDS-SQIASGASDKSVILWEVTTG-------QPVRRWREHASKVTCVKFNEDSSV 262 (540)
Q Consensus 191 wd~~~~~~~~~~~~h~~~v~~l~~sp~~-~~l~s~s~dg~i~iwd~~~~-------~~~~~~~~h~~~v~~~~~~~~~~~ 262 (540)
|++ +|..+..+..|...|..++.+++. .+++|||.||+|++|++..- +...++..-.+.+.++.+.+.++.
T Consensus 1034 W~p-~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~ 1112 (1431)
T KOG1240|consen 1034 WNP-RGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQ 1112 (1431)
T ss_pred CCc-cceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCe
Confidence 775 788999999999999999988755 99999999999999998642 122233334678999999999999
Q ss_pred EEEecCCCcEEEEEecCCCCCCcchhhhhHhhhhcCCceeEEEEeecccccccccCceeeEEEeeeecccccceeeeeec
Q psy18231 263 VISGSQDNTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMS 342 (540)
Q Consensus 263 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (540)
+|.++.||.|++.+++..+....... .
T Consensus 1113 ~Av~t~DG~v~~~~id~~~~~~~~~~--------------~--------------------------------------- 1139 (1431)
T KOG1240|consen 1113 FAVSTKDGSVRVLRIDHYNVSKRVAT--------------Q--------------------------------------- 1139 (1431)
T ss_pred EEEEcCCCeEEEEEccccccccceee--------------e---------------------------------------
Confidence 99999999999999987421000000 0
Q ss_pred cceeEEEeecccceecccccccccccchhhhhhcccccEEEEEecC---C-eeEeeeCCCeEEEEeCCCCceEEeee---
Q psy18231 343 TQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEARDSITSVHVSD---H-EILTASLDCRIRRYDIRTGNLVTDYV--- 415 (540)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~---~-~l~~~~~dg~i~iwd~~~~~~~~~~~--- 415 (540)
. ..........-|..-++.. . .++.+..-+.|..||+++......++
T Consensus 1140 ----~----------------------ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~ 1193 (1431)
T KOG1240|consen 1140 ----V----------------------RIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQL 1193 (1431)
T ss_pred ----e----------------------ecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCc
Confidence 0 0000111111122222222 3 68888889999999999877655544
Q ss_pred -CCceEEEEEecCCcEEEeecCCCeEEEEeccccchhhhhc-cCcCCcceEEEEecCC-CCeEEEee--CCCcEEEEEec
Q psy18231 416 -GEPIVDACFTRDCQCILTCSTDECLRLFDKATGELLEEYK-GHKSGDFRIECCLDSK-DSQIFCGS--SDGKIYKWQLV 490 (540)
Q Consensus 416 -~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~v~~~~~~~s~~-~~~l~s~s--~dg~i~iwd~~ 490 (540)
.+.|++++.+|.++++++|+..|.+.+||++=+.++.... ++..++..+.+++.+. ....++++ ..+.|.+|++.
T Consensus 1194 ~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~ 1273 (1431)
T KOG1240|consen 1194 RHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNME 1273 (1431)
T ss_pred cccceeEEEecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecc
Confidence 4689999999999999999999999999999888776664 3446677776555443 34544444 57789999999
Q ss_pred CCcceeEEEec-----------------ccceeeeEEEEcCCCcEEEeec-CCeeEEEEcccc
Q psy18231 491 DSSQISTLIHS-----------------VGKAVVNSLCSHPTRKHIMSAC-GNNVKLWTAEED 535 (540)
Q Consensus 491 ~~~~~~~~~~~-----------------~~~~~v~~l~~s~d~~~l~s~~-d~~i~iw~~~~~ 535 (540)
+|....++... .+.-......+...+.++.+|+ |..|+.||....
T Consensus 1274 ~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p 1336 (1431)
T KOG1240|consen 1274 TGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRP 1336 (1431)
T ss_pred cCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCc
Confidence 98776666532 1111222333444456788888 999999998654
|
|
| >KOG0771|consensus | Back alignment and domain information |
|---|
Probab=99.75 E-value=7.3e-16 Score=136.55 Aligned_cols=192 Identities=16% Similarity=0.190 Sum_probs=150.6
Q ss_pred eEEEECCCCCEEEEecCCCcEEEEEecCCCCCCcchhhhhHhhhhcCCceeEEEEeecccccccccCceeeEEEeeeecc
Q psy18231 252 TCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKY 331 (540)
Q Consensus 252 ~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (540)
.+++|+.+|..+++++.||++|+|+..+..
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~-------------------------------------------------- 177 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSML-------------------------------------------------- 177 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcch--------------------------------------------------
Confidence 789999999999999999999999976554
Q ss_pred cccceeeeeeccceeEEEeecccceecccccccccccchhhhhhcccccEEEEEecC--CeeEeeeCCCeEEEEeCCCCc
Q psy18231 332 LNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEARDSITSVHVSD--HEILTASLDCRIRRYDIRTGN 409 (540)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~--~~l~~~~~dg~i~iwd~~~~~ 409 (540)
.......|...|.++.|+| ..|++-+.| ..++|+.+++.
T Consensus 178 --------------------------------------t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~ 218 (398)
T KOG0771|consen 178 --------------------------------------TILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGA 218 (398)
T ss_pred --------------------------------------hhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCc
Confidence 1225567899999999999 688888888 89999999997
Q ss_pred eEEeeeC----CceEEEEEecCC-----cEEEeecCCCeEEEEeccccch-----hhhhccCcCCcceEEEEecCCCCeE
Q psy18231 410 LVTDYVG----EPIVDACFTRDC-----QCILTCSTDECLRLFDKATGEL-----LEEYKGHKSGDFRIECCLDSKDSQI 475 (540)
Q Consensus 410 ~~~~~~~----~~i~~~~~sp~~-----~~l~~~~~dg~i~i~d~~~~~~-----~~~~~~~~~~v~~~~~~~s~~~~~l 475 (540)
.+..... .....+.|+.|+ ..++....-+.|+.||+....- .++.......+.++ +.++||+++
T Consensus 219 ~~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl--~VS~dGkf~ 296 (398)
T KOG0771|consen 219 ALARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSL--AVSDDGKFL 296 (398)
T ss_pred hhhhcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeE--EEcCCCcEE
Confidence 7766652 356677888776 3333344456677776643321 12222223346666 889999999
Q ss_pred EEeeCCCcEEEEEecCCcceeEEEecccceeeeEEEEcCCCcEEEeec-CCeeEEEEcccc
Q psy18231 476 FCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC-GNNVKLWTAEED 535 (540)
Q Consensus 476 ~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~-d~~i~iw~~~~~ 535 (540)
|.|+.||.|.|++..+.+.+...+. .|...|+.+.|+||.+++++.+ |.+..+-.+.-+
T Consensus 297 AlGT~dGsVai~~~~~lq~~~~vk~-aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~vd 356 (398)
T KOG0771|consen 297 ALGTMDGSVAIYDAKSLQRLQYVKE-AHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAVD 356 (398)
T ss_pred EEeccCCcEEEEEeceeeeeEeehh-hheeeeeeEEEcCCcCcccccccCCceeEEEEeec
Confidence 9999999999999998888877765 8999999999999999999988 999888877653
|
|
| >KOG2394|consensus | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.8e-16 Score=143.01 Aligned_cols=132 Identities=23% Similarity=0.294 Sum_probs=113.7
Q ss_pred cccEEEEEecC---CeeEeeeCCCeEEEEeCCCC--------------ce--------------EEee--eCCceEEEEE
Q psy18231 378 RDSITSVHVSD---HEILTASLDCRIRRYDIRTG--------------NL--------------VTDY--VGEPIVDACF 424 (540)
Q Consensus 378 ~~~v~~l~~~~---~~l~~~~~dg~i~iwd~~~~--------------~~--------------~~~~--~~~~i~~~~~ 424 (540)
+..++++.|-| ..++++-.+|.+.+||..-. .. +..+ -...|+..+|
T Consensus 219 ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~F 298 (636)
T KOG2394|consen 219 KSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAF 298 (636)
T ss_pred ccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccceeEeccccccceeE
Confidence 47899999987 78888999999999976411 00 0111 1146889999
Q ss_pred ecCCcEEEeecCCCeEEEEeccccchhhhhccCcCCcceEEEEecCCCCeEEEeeCCCcEEEEEecCCcceeEEEecccc
Q psy18231 425 TRDCQCILTCSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGK 504 (540)
Q Consensus 425 sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~ 504 (540)
+|||++||+.+.||.++|||..+.+++..++.--+...++ +|||||+||++|++|.-|.||.+...+.+..-. +|+
T Consensus 299 S~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCv--cWSPDGKyIvtGGEDDLVtVwSf~erRVVARGq--GHk 374 (636)
T KOG2394|consen 299 SPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCV--CWSPDGKYIVTGGEDDLVTVWSFEERRVVARGQ--GHK 374 (636)
T ss_pred cCCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEE--EEcCCccEEEecCCcceEEEEEeccceEEEecc--ccc
Confidence 9999999999999999999999999999888888877777 999999999999999999999999999999888 999
Q ss_pred eeeeEEEEc
Q psy18231 505 AVVNSLCSH 513 (540)
Q Consensus 505 ~~v~~l~~s 513 (540)
+.|+.|+|.
T Consensus 375 SWVs~VaFD 383 (636)
T KOG2394|consen 375 SWVSVVAFD 383 (636)
T ss_pred cceeeEeec
Confidence 999999998
|
|
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.7e-16 Score=154.21 Aligned_cols=229 Identities=13% Similarity=0.120 Sum_probs=159.5
Q ss_pred cceeeeecccccce--eeeeecCeEEEEeCCCCCEEEEeeCC---CcEEEEcCCCCee--EEEeecCCcceeEEEEeeCC
Q psy18231 146 EWSIRVYRPLTVNR--ELFVLSGLMHTRFPVDGSYCLTCGSD---KKIKLWNPYRNLL--LKTYGGHAHEVNDATAACDS 218 (540)
Q Consensus 146 ~~~i~~~~~~~~~~--~~~h~~~v~~v~~spdg~~lat~~~d---g~i~iwd~~~~~~--~~~~~~h~~~v~~l~~sp~~ 218 (540)
+..|.+|+...... ...|...+.+.+|||||++|+..+.+ ..|.+||+.+++. +..+.+ ....++|+|||
T Consensus 183 ~~~i~i~d~dg~~~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g---~~~~~~wSPDG 259 (429)
T PRK01742 183 PYEVRVADYDGFNQFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRG---HNGAPAFSPDG 259 (429)
T ss_pred eEEEEEECCCCCCceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCC---ccCceeECCCC
Confidence 46788888755432 34567789999999999999987643 4799999988754 333333 34468999999
Q ss_pred CeEEEee-CCCeEEEE--EcCCCceeEeccccCCceeEEEECCCCCEEEEec-CCCcEEEEEecCCCCCCcchhhhhHhh
Q psy18231 219 SQIASGA-SDKSVILW--EVTTGQPVRRWREHASKVTCVKFNEDSSVVISGS-QDNTVMMWDVKSRSHHPIQVRCLNEAL 294 (540)
Q Consensus 219 ~~l~s~s-~dg~i~iw--d~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~ 294 (540)
+.|+.++ .+|.+.|| |+.+++ ...+..+...+....|+|||+.|+.++ .+|...+|++........
T Consensus 260 ~~La~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~--------- 329 (429)
T PRK01742 260 SRLAFASSKDGVLNIYVMGANGGT-PSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGAS--------- 329 (429)
T ss_pred CEEEEEEecCCcEEEEEEECCCCC-eEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeE---------
Confidence 9988765 67876665 555555 445566777788999999999776554 578889998764321000
Q ss_pred hhcCCceeEEEEeecccccccccCceeeEEEeeeecccccceeeeeeccceeEEEeecccceecccccccccccchhhhh
Q psy18231 295 KEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQAL 374 (540)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (540)
.+
T Consensus 330 ------------------------------------------------------------------------------~l 331 (429)
T PRK01742 330 ------------------------------------------------------------------------------LV 331 (429)
T ss_pred ------------------------------------------------------------------------------Ee
Confidence 00
Q ss_pred hcccccEEEEEecC--CeeEeeeCCCeEEEEeCCCCceEEeeeCCceEEEEEecCCcEEEeecCCCeEEEEecc--ccch
Q psy18231 375 KEARDSITSVHVSD--HEILTASLDCRIRRYDIRTGNLVTDYVGEPIVDACFTRDCQCILTCSTDECLRLFDKA--TGEL 450 (540)
Q Consensus 375 ~~~~~~v~~l~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~--~~~~ 450 (540)
.+.. ....|+| +.++..+.++ +.+||+.+++..............|+|||++|+.++.++...+|++. +++.
T Consensus 332 -~~~~--~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~lt~~~~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~ 407 (429)
T PRK01742 332 -GGRG--YSAQISADGKTLVMINGDN-VVKQDLTSGSTEVLSSTFLDESPSISPNGIMIIYSSTQGLGKVLQLVSADGRF 407 (429)
T ss_pred -cCCC--CCccCCCCCCEEEEEcCCC-EEEEECCCCCeEEecCCCCCCCceECCCCCEEEEEEcCCCceEEEEEECCCCc
Confidence 1111 2345666 6666666654 56699998875433333344567899999999999999988888753 5777
Q ss_pred hhhhccCcCCcceEEEEecCC
Q psy18231 451 LEEYKGHKSGDFRIECCLDSK 471 (540)
Q Consensus 451 ~~~~~~~~~~v~~~~~~~s~~ 471 (540)
++.+..|.+.+... +|+|-
T Consensus 408 ~~~l~~~~g~~~~p--~wsp~ 426 (429)
T PRK01742 408 KARLPGSDGQVKFP--AWSPY 426 (429)
T ss_pred eEEccCCCCCCCCc--ccCCC
Confidence 88888888777666 78774
|
|
| >KOG0290|consensus | Back alignment and domain information |
|---|
Probab=99.74 E-value=1e-16 Score=134.70 Aligned_cols=234 Identities=17% Similarity=0.238 Sum_probs=157.0
Q ss_pred eeeecCeEEEEeCCCC-----CEEEEeeCCCcEEEEcCCCCe--e--EEEe-----ecCCcceeEEEEee-CCCeEEEee
Q psy18231 161 LFVLSGLMHTRFPVDG-----SYCLTCGSDKKIKLWNPYRNL--L--LKTY-----GGHAHEVNDATAAC-DSSQIASGA 225 (540)
Q Consensus 161 ~~h~~~v~~v~~spdg-----~~lat~~~dg~i~iwd~~~~~--~--~~~~-----~~h~~~v~~l~~sp-~~~~l~s~s 225 (540)
..|.-+++.+.|.|+. ++|||++ -.+|+|.+...+ . ...+ ..+..++++..|+. |.+++.++|
T Consensus 93 fd~~YP~tK~~wiPd~~g~~pdlLATs~--D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSS 170 (364)
T KOG0290|consen 93 FDHPYPVTKLMWIPDSKGVYPDLLATSS--DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSS 170 (364)
T ss_pred CCCCCCccceEecCCccccCcchhhccc--CeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeec
Confidence 4588899999999976 3566654 589999876321 1 1111 34668899999987 778899999
Q ss_pred CCCeEEEEEcCCCce---eEeccccCCceeEEEECCCC-CEEEEecCCCcEEEEEecCCCCCCcchhhhhHhhhhcCCce
Q psy18231 226 SDKSVILWEVTTGQP---VRRWREHASKVTCVKFNEDS-SVVISGSQDNTVMMWDVKSRSHHPIQVRCLNEALKEARDSI 301 (540)
Q Consensus 226 ~dg~i~iwd~~~~~~---~~~~~~h~~~v~~~~~~~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (540)
-|-++.|||++++.. ...+-.|..+|..++|...+ +.+++.|.||++++||++..+...+.-...+ ..
T Consensus 171 iDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~--------~~ 242 (364)
T KOG0290|consen 171 IDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPS--------PS 242 (364)
T ss_pred ccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCC--------CC
Confidence 999999999998743 45577999999999999855 6899999999999999998764222200000 00
Q ss_pred eEEEEeecccccccccCceeeEEEeeeecccccceeeeeeccceeEEEeecccceecccccccccccchhhhhhcccccE
Q psy18231 302 TSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEARDSI 381 (540)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 381 (540)
...-.+ .|. ................+.+.+.+ .....+..+.+|.+.|
T Consensus 243 ~pLlRL------------------swn--kqDpnymATf~~dS~~V~iLDiR------------~P~tpva~L~~H~a~V 290 (364)
T KOG0290|consen 243 TPLLRL------------------SWN--KQDPNYMATFAMDSNKVVILDIR------------VPCTPVARLRNHQASV 290 (364)
T ss_pred Ccceee------------------ccC--cCCchHHhhhhcCCceEEEEEec------------CCCcceehhhcCcccc
Confidence 000000 000 00111111112222233333322 2233456889999999
Q ss_pred EEEEecC---CeeEeeeCCCeEEEEeCCCCce------EEee-eCCceEEEEEec-CCcEEEeecC
Q psy18231 382 TSVHVSD---HEILTASLDCRIRRYDIRTGNL------VTDY-VGEPIVDACFTR-DCQCILTCST 436 (540)
Q Consensus 382 ~~l~~~~---~~l~~~~~dg~i~iwd~~~~~~------~~~~-~~~~i~~~~~sp-~~~~l~~~~~ 436 (540)
..++|.| ..+.+++.|..+.+||+.+.-. +..+ .++.|+.+.|++ .+.+++.+..
T Consensus 291 NgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPilay~a~~EVNqi~Ws~~~~Dwiai~~~ 356 (364)
T KOG0290|consen 291 NGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPILAYTAGGEVNQIQWSSSQPDWIAICFG 356 (364)
T ss_pred cceEecCCCCceeeecCCcceEEEEecccccccCCCCchhhhhccceeeeeeecccCCCEEEEEec
Confidence 9999998 8899999999999999985432 2222 347899999997 5667776654
|
|
| >KOG2110|consensus | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.1e-14 Score=126.75 Aligned_cols=235 Identities=11% Similarity=0.122 Sum_probs=173.8
Q ss_pred cCeEEEEeCCCCCEEEEeeCCCcEEEEcCCCCeeEEEeecCCcceeEEEEeeCCCeEEEeeCC--CeEEEEEcCCCceeE
Q psy18231 165 SGLMHTRFPVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASD--KSVILWEVTTGQPVR 242 (540)
Q Consensus 165 ~~v~~v~~spdg~~lat~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~d--g~i~iwd~~~~~~~~ 242 (540)
..+..+.|+.|...|..|+.||. ++++.+..............|--+-|+ ..++|..+.+ +.+++.+++.+..+.
T Consensus 6 ~ti~~~~~Nqd~~~lsvGs~~Gy-k~~~~~~~~k~~~~~~~~~~IvEmLFS--SSLvaiV~~~qpr~Lkv~~~Kk~~~IC 82 (391)
T KOG2110|consen 6 PTINFIGFNQDSTLLSVGSKDGY-KIFSCSPFEKCFSKDTEGVSIVEMLFS--SSLVAIVSIKQPRKLKVVHFKKKTTIC 82 (391)
T ss_pred cceeeeeeccceeEEEccCCCce-eEEecCchHHhhcccCCCeEEEEeecc--cceeEEEecCCCceEEEEEcccCceEE
Confidence 34667779999999999998875 477766544422222223344455565 4566666554 358999998887776
Q ss_pred eccccCCceeEEEECCCCCEEEEecCCCcEEEEEecCCCCCCcchhhhhHhhhhcCCceeEEEEeecccccccccCceee
Q psy18231 243 RWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHLSNGLLTK 322 (540)
Q Consensus 243 ~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (540)
.+. ...+|.++.++. +.|++.=+ ..|.|||+++.+....
T Consensus 83 e~~-fpt~IL~VrmNr--~RLvV~Le-e~IyIydI~~MklLhT------------------------------------- 121 (391)
T KOG2110|consen 83 EIF-FPTSILAVRMNR--KRLVVCLE-ESIYIYDIKDMKLLHT------------------------------------- 121 (391)
T ss_pred EEe-cCCceEEEEEcc--ceEEEEEc-ccEEEEecccceeehh-------------------------------------
Confidence 653 467899999964 45666554 4599999998873110
Q ss_pred EEEeeeecccccceeeeeeccceeEEEeecccceecccccccccccchhhhhhcccccEEEEEecC--CeeEee--eCCC
Q psy18231 323 LVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEARDSITSVHVSD--HEILTA--SLDC 398 (540)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~--~~l~~~--~~dg 398 (540)
+.....+...+.++++++ .+++.- ...|
T Consensus 122 ------------------------------------------------I~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~G 153 (391)
T KOG2110|consen 122 ------------------------------------------------IETTPPNPKGLCALSPNNANCYLAYPGSTTSG 153 (391)
T ss_pred ------------------------------------------------hhccCCCccceEeeccCCCCceEEecCCCCCc
Confidence 112234455666777766 355542 3468
Q ss_pred eEEEEeCCCCceEEeeeC--CceEEEEEecCCcEEEeecCCCe-EEEEeccccchhhhhccCcCCcceEEEEecCCCCeE
Q psy18231 399 RIRRYDIRTGNLVTDYVG--EPIVDACFTRDCQCILTCSTDEC-LRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQI 475 (540)
Q Consensus 399 ~i~iwd~~~~~~~~~~~~--~~i~~~~~sp~~~~l~~~~~dg~-i~i~d~~~~~~~~~~~~~~~~v~~~~~~~s~~~~~l 475 (540)
.|.+||..+-+.+..+.. +++.+++|+++|.+||+++..|+ ||||.+.+|+.+.+|+....++...+++|+|++++|
T Consensus 154 dV~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L 233 (391)
T KOG2110|consen 154 DVVLFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFL 233 (391)
T ss_pred eEEEEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeE
Confidence 999999999988887764 68999999999999999999997 689999999999999877767777777999999999
Q ss_pred EEeeCCCcEEEEEecC
Q psy18231 476 FCGSSDGKIYKWQLVD 491 (540)
Q Consensus 476 ~s~s~dg~i~iwd~~~ 491 (540)
++.|..++|.|+.+.+
T Consensus 234 ~~sS~TeTVHiFKL~~ 249 (391)
T KOG2110|consen 234 AASSNTETVHIFKLEK 249 (391)
T ss_pred EEecCCCeEEEEEecc
Confidence 9999999999999864
|
|
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=99.72 E-value=4.5e-15 Score=139.28 Aligned_cols=316 Identities=10% Similarity=0.058 Sum_probs=187.8
Q ss_pred EE-EEeeCCCcEEEEcCCCCeeEEEeecCCcceeEEEEeeCCCeEEEeeCCCeEEEEEcCCCceeEeccccCCceeEEEE
Q psy18231 178 YC-LTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKF 256 (540)
Q Consensus 178 ~l-at~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~ 256 (540)
++ ++-..++.|.+.|..+.+.+.++......-..+.|+|||+++++++.||.|.++|+.+++.+.+++. ......+++
T Consensus 7 l~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~-G~~~~~i~~ 85 (369)
T PF02239_consen 7 LFYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKV-GGNPRGIAV 85 (369)
T ss_dssp EEEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE--SSEEEEEEE
T ss_pred EEEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEec-CCCcceEEE
Confidence 44 3455689999999999999999986555445678999999999999999999999999999988865 445688999
Q ss_pred CCCCCEEEEec-CCCcEEEEEecCCCCCCcchhhhhHhhhhcCCceeEEEEeecccccccccCceeeEEEeeeecccccc
Q psy18231 257 NEDSSVVISGS-QDNTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGL 335 (540)
Q Consensus 257 ~~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (540)
++||++++++. .++.+.++|.++.+..... ... . .........
T Consensus 86 s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I--~~~-------------------~---------------~~~~~~~~R 129 (369)
T PF02239_consen 86 SPDGKYVYVANYEPGTVSVIDAETLEPVKTI--PTG-------------------G---------------MPVDGPESR 129 (369)
T ss_dssp --TTTEEEEEEEETTEEEEEETTT--EEEEE--E---------------------E---------------E-TTTS---
T ss_pred cCCCCEEEEEecCCCceeEeccccccceeec--ccc-------------------c---------------ccccccCCC
Confidence 99999998775 5789999999887621100 000 0 000001112
Q ss_pred eeeeeeccceeEEEeecccceecccccccccccchhhhhhcccccEEEEEecC--CeeEe-eeCCCeEEEEeCCCCceEE
Q psy18231 336 LSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEARDSITSVHVSD--HEILT-ASLDCRIRRYDIRTGNLVT 412 (540)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~--~~l~~-~~~dg~i~iwd~~~~~~~~ 412 (540)
..++..+..+...+.......+++.+.......... .............|+| +++++ ...+..|-++|.++++.+.
T Consensus 130 v~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~-~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~ 208 (369)
T PF02239_consen 130 VAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKV-TTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVA 208 (369)
T ss_dssp EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEE-EEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEE
T ss_pred ceeEEecCCCCEEEEEEccCCeEEEEEeccccccce-eeecccccccccccCcccceeeecccccceeEEEeeccceEEE
Confidence 223333344443444444333444332211111100 1112234456678888 55544 4567799999999998876
Q ss_pred eeeC------CceEEE-------EEe--cCCcEEEeecCCCeEEEEeccccchhhhhccCcCCcceEEEEecCCCCeEEE
Q psy18231 413 DYVG------EPIVDA-------CFT--RDCQCILTCSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFC 477 (540)
Q Consensus 413 ~~~~------~~i~~~-------~~s--p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~s~~~~~l~s 477 (540)
.+.. .+...+ .|. ..+...++.-....+.+||..+.+.++++.....+ ..+ ..+|+++++.+
T Consensus 209 ~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~g-lFi--~thP~s~~vwv 285 (369)
T PF02239_consen 209 LIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGG-LFI--KTHPDSRYVWV 285 (369)
T ss_dssp EEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS---E--E--TT-SEEEE
T ss_pred EeeccccccccccccccCCCcceEEeeccccceecccccCCccccchhhcCeEEEEEECCCCc-cee--ecCCCCccEEe
Confidence 6542 122221 122 12233322233345667898899999999877666 344 67999999998
Q ss_pred e----eCCCcEEEEEecCCcceeEEEecccceeeeEEEEcCCCcEEEeec---CCeeEEEEcccc
Q psy18231 478 G----SSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC---GNNVKLWTAEED 535 (540)
Q Consensus 478 ~----s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~---d~~i~iw~~~~~ 535 (540)
. ...++|.++|.++.+.+.++.. .....+..+.|++||+++..+. ++.|.+||..+-
T Consensus 286 d~~~~~~~~~v~viD~~tl~~~~~i~~-~~~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~Tl 349 (369)
T PF02239_consen 286 DTFLNPDADTVQVIDKKTLKVVKTITP-GPGKRVVHMEFNPDGKEVWVSVWDGNGAIVVYDAKTL 349 (369)
T ss_dssp E-TT-SSHT-EEEEECCGTEEEE-HHH-HHT--EEEEEE-TTSSEEEEEEE--TTEEEEEETTTT
T ss_pred eccCCCCCceEEEEECcCcceeEEEec-cCCCcEeccEECCCCCEEEEEEecCCCEEEEEECCCc
Confidence 7 4568999999999877777652 2223589999999999877665 348999998753
|
... |
| >KOG1310|consensus | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.3e-16 Score=143.80 Aligned_cols=246 Identities=19% Similarity=0.267 Sum_probs=166.3
Q ss_pred eEEEeecCCcceeEEEEeeCCCeEEEeeCCCeEEEEEcCCCceeEecc-ccCCceeEEEECC--CCCEEEEecCCCcEEE
Q psy18231 198 LLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPVRRWR-EHASKVTCVKFNE--DSSVVISGSQDNTVMM 274 (540)
Q Consensus 198 ~~~~~~~h~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~h~~~v~~~~~~~--~~~~l~s~~~dg~i~i 274 (540)
+.+.+.||++.|.+++|+.+|.+|++||.|-.+.|||.-..+++..+. +|...|.++.|-| +..++++|..|..|++
T Consensus 42 lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~l 121 (758)
T KOG1310|consen 42 LEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKL 121 (758)
T ss_pred hhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEE
Confidence 345788999999999999999999999999999999999888887764 8999999999999 5578999999999999
Q ss_pred EEecCCCCCCcchhhhhHhhhhcCCceeEEEEeecccccccccCceeeEEEeeeecccccceeeeeeccceeEEEeeccc
Q psy18231 275 WDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLG 354 (540)
Q Consensus 275 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (540)
+|+...+......
T Consensus 122 fdl~~~~~~~~d~------------------------------------------------------------------- 134 (758)
T KOG1310|consen 122 FDLDSSKEGGMDH------------------------------------------------------------------- 134 (758)
T ss_pred Eeccccccccccc-------------------------------------------------------------------
Confidence 9998754211000
Q ss_pred ceecccccccccccchhhhhhcccccEEEEEecC---CeeEeeeCCCeEEEEeCCCCceEE----------eeeC--Cce
Q psy18231 355 STQIGDVTPISIHNSCFQALKEARDSITSVHVSD---HEILTASLDCRIRRYDIRTGNLVT----------DYVG--EPI 419 (540)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~---~~l~~~~~dg~i~iwd~~~~~~~~----------~~~~--~~i 419 (540)
-..........|...|..|+..| +.+.++++||+|+-||++...... .+.. -..
T Consensus 135 -----------~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~liel 203 (758)
T KOG1310|consen 135 -----------GMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIEL 203 (758)
T ss_pred -----------CccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhhee
Confidence 00011224556777888887765 789999999999999998643211 1111 257
Q ss_pred EEEEEec-CCcEEEeecCCCeEEEEeccccchhhhhccCcCCcceEEEEecCCCCeEEEeeCCCcEEEEEecCCcceeE-
Q psy18231 420 VDACFTR-DCQCILTCSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQIST- 497 (540)
Q Consensus 420 ~~~~~sp-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~- 497 (540)
.++.++| +..+|++|+.|-..++||.+.. +..+..... . .+.|.. .++.|+.|-...-+...-
T Consensus 204 k~ltisp~rp~~laVGgsdpfarLYD~Rr~--lks~~s~~~----~--~~~pp~-------~~~cv~yf~p~hlkn~~gn 268 (758)
T KOG1310|consen 204 KCLTISPSRPYYLAVGGSDPFARLYDRRRV--LKSFRSDGT----M--NTCPPK-------DCRCVRYFSPGHLKNSQGN 268 (758)
T ss_pred eeeeecCCCCceEEecCCCchhhhhhhhhh--ccCCCCCcc----c--cCCCCc-------ccchhheecCccccCcccc
Confidence 8899999 4568999999999999996321 222211100 0 011110 122232222111101000
Q ss_pred EEecccceeeeEEEEcCCCcEEEeec-CCeeEEEEcccccCC
Q psy18231 498 LIHSVGKAVVNSLCSHPTRKHIMSAC-GNNVKLWTAEEDYGQ 538 (540)
Q Consensus 498 ~~~~~~~~~v~~l~~s~d~~~l~s~~-d~~i~iw~~~~~~~~ 538 (540)
+. .--..++.+.|+|+|.-|...- ...|+++|+..+.++
T Consensus 269 ~~--~~~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~~~~ 308 (758)
T KOG1310|consen 269 LD--RYITCCTYVTFNPNGTELLVSWGGEHVYLFDVNEDKSP 308 (758)
T ss_pred cc--cceeeeEEEEECCCCcEEEEeeCCeEEEEEeecCCCCc
Confidence 11 1112367889999997666555 779999999877654
|
|
| >KOG1517|consensus | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.1e-15 Score=149.85 Aligned_cols=250 Identities=18% Similarity=0.248 Sum_probs=176.7
Q ss_pred ceeEEEEeeCCCeEEEeeCCCeEEEEEcCCCceeEecccc---CCceeEEEECC--CCCEEEEecCCCcEEEEEecCCCC
Q psy18231 208 EVNDATAACDSSQIASGASDKSVILWEVTTGQPVRRWREH---ASKVTCVKFNE--DSSVVISGSQDNTVMMWDVKSRSH 282 (540)
Q Consensus 208 ~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h---~~~v~~~~~~~--~~~~l~s~~~dg~i~iwd~~~~~~ 282 (540)
.-..+.|+|-...++++...-.|+|||.+.++.+..+..+ ...|+.+.+-. |..++++++.||.|+||+--....
T Consensus 1066 ~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~ 1145 (1387)
T KOG1517|consen 1066 PPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKW 1145 (1387)
T ss_pred CCceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEeccccccc
Confidence 3456788888888999988889999999999988777643 45788888866 557899999999999997543321
Q ss_pred CCcchhhhhHhhhhcCCceeEEEEeecccccccccCceeeEEEeeeecccccceeeeeeccceeEEEeecccceeccccc
Q psy18231 283 HPIQVRCLNEALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVT 362 (540)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (540)
.... .+..|..-
T Consensus 1146 ~~~e------------------------------------LVTaw~~L-------------------------------- 1157 (1387)
T KOG1517|consen 1146 KKPE------------------------------------LVTAWSSL-------------------------------- 1157 (1387)
T ss_pred CCce------------------------------------eEEeeccc--------------------------------
Confidence 0000 00000000
Q ss_pred ccccccchhhhhhcccccEEEEEecC--CeeEeeeCCCeEEEEeCCCCceEEeeeC---CceEEEEEe-cCCcEEEeecC
Q psy18231 363 PISIHNSCFQALKEARDSITSVHVSD--HEILTASLDCRIRRYDIRTGNLVTDYVG---EPIVDACFT-RDCQCILTCST 436 (540)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~v~~l~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~---~~i~~~~~s-p~~~~l~~~~~ 436 (540)
...+.+..+.-.-+.|.. ..|++++.-..|+|||.....++..+.- ..++++.-+ +.|+.+++|..
T Consensus 1158 --------s~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfa 1229 (1387)
T KOG1517|consen 1158 --------SDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFA 1229 (1387)
T ss_pred --------cccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccceeecccccCCceEEEeec
Confidence 000011111113345555 6677777789999999998888877764 345555433 35799999999
Q ss_pred CCeEEEEeccccc---hhhhhccCcCC--cceEEEEecCCCC-eEEEeeCCCcEEEEEecCCcceeEEEecccc--e-ee
Q psy18231 437 DECLRLFDKATGE---LLEEYKGHKSG--DFRIECCLDSKDS-QIFCGSSDGKIYKWQLVDSSQISTLIHSVGK--A-VV 507 (540)
Q Consensus 437 dg~i~i~d~~~~~---~~~~~~~~~~~--v~~~~~~~s~~~~-~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~--~-~v 507 (540)
||.|++||.+... .+...+.|+.. |..+ .+-+.|- .|++|+.||.|++||++.......+....|. + ..
T Consensus 1230 DGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~--slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~l 1307 (1387)
T KOG1517|consen 1230 DGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHL--SLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSAL 1307 (1387)
T ss_pred CCceEEeecccCCccccceeecccCCcccceeE--EeecCCCcceeeeccCCeEEEEecccCcccccceeeeccccCccc
Confidence 9999999987643 57778888877 6555 5656554 4999999999999999875333333322333 3 59
Q ss_pred eEEEEcCCCcEEEeecCCeeEEEEcccc
Q psy18231 508 NSLCSHPTRKHIMSACGNNVKLWTAEED 535 (540)
Q Consensus 508 ~~l~~s~d~~~l~s~~d~~i~iw~~~~~ 535 (540)
+++..+++...+|+|+.+.|+||++.++
T Consensus 1308 Tal~VH~hapiiAsGs~q~ikIy~~~G~ 1335 (1387)
T KOG1517|consen 1308 TALTVHEHAPIIASGSAQLIKIYSLSGE 1335 (1387)
T ss_pred eeeeeccCCCeeeecCcceEEEEecChh
Confidence 9999999999999999899999999764
|
|
| >KOG1354|consensus | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.8e-15 Score=130.33 Aligned_cols=285 Identities=21% Similarity=0.308 Sum_probs=194.8
Q ss_pred ecCeEEEEeCCCCCEEEEeeCCCcEEEEcCCCCe-----eEEEeecCC------------cceeEEEEeeCCC--eEEEe
Q psy18231 164 LSGLMHTRFPVDGSYCLTCGSDKKIKLWNPYRNL-----LLKTYGGHA------------HEVNDATAACDSS--QIASG 224 (540)
Q Consensus 164 ~~~v~~v~~spdg~~lat~~~dg~i~iwd~~~~~-----~~~~~~~h~------------~~v~~l~~sp~~~--~l~s~ 224 (540)
.+-|.+|.|..+|.+||||..+|.|.++.-.... ....++.|. ..|..+.|.++++ .++..
T Consensus 25 adiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLls 104 (433)
T KOG1354|consen 25 ADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLS 104 (433)
T ss_pred hcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEe
Confidence 4568999999999999999999999999643322 233444443 4578899998654 47777
Q ss_pred eCCCeEEEEEcCCCce-----------------------------------eEe-ccccCCceeEEEECCCCCEEEEecC
Q psy18231 225 ASDKSVILWEVTTGQP-----------------------------------VRR-WREHASKVTCVKFNEDSSVVISGSQ 268 (540)
Q Consensus 225 s~dg~i~iwd~~~~~~-----------------------------------~~~-~~~h~~~v~~~~~~~~~~~l~s~~~ 268 (540)
+.|.+|++|.+..... .+. -..|.-.|+++.++.|+..++++.
T Consensus 105 tNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSAD- 183 (433)
T KOG1354|consen 105 TNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSAD- 183 (433)
T ss_pred cCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeecc-
Confidence 8899999998854311 001 125777899999999999888875
Q ss_pred CCcEEEEEecCCCCCCcchhhhhHhhhhcCCceeEEEEeecccccccccCceeeEEEeeeecccccceeeeeeccceeEE
Q psy18231 269 DNTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMV 348 (540)
Q Consensus 269 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (540)
|=.|.+|+++-...
T Consensus 184 dLRINLWnlei~d~------------------------------------------------------------------ 197 (433)
T KOG1354|consen 184 DLRINLWNLEIIDQ------------------------------------------------------------------ 197 (433)
T ss_pred ceeeeeccccccCC------------------------------------------------------------------
Confidence 67899999865431
Q ss_pred EeecccceecccccccccccchhhhhhcccccEEEEEecC---CeeEeeeCCCeEEEEeCCCCceEE------eee--C-
Q psy18231 349 LLDFLGSTQIGDVTPISIHNSCFQALKEARDSITSVHVSD---HEILTASLDCRIRRYDIRTGNLVT------DYV--G- 416 (540)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~---~~l~~~~~dg~i~iwd~~~~~~~~------~~~--~- 416 (540)
+..+.++.+. .+..-..-|++..|+| +.++-.+..|+|++-|++...+.. ... +
T Consensus 198 ------sFnIVDIKP~--------nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp~ 263 (433)
T KOG1354|consen 198 ------SFNIVDIKPA--------NMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDPS 263 (433)
T ss_pred ------ceeEEEcccc--------CHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCCc
Confidence 0011111111 2223345677888998 888899999999999999543211 110 0
Q ss_pred ---------CceEEEEEecCCcEEEeecCCCeEEEEec-cccchhhhhccCcC------------Cc-ceEEEEecCCCC
Q psy18231 417 ---------EPIVDACFTRDCQCILTCSTDECLRLFDK-ATGELLEEYKGHKS------------GD-FRIECCLDSKDS 473 (540)
Q Consensus 417 ---------~~i~~~~~sp~~~~l~~~~~dg~i~i~d~-~~~~~~~~~~~~~~------------~v-~~~~~~~s~~~~ 473 (540)
..|..+.|+++|+++++-+. -+|++||+ ...+++.+++.|.. .| -...++|+.++.
T Consensus 264 ~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~~ 342 (433)
T KOG1354|consen 264 SRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSGNDS 342 (433)
T ss_pred chhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcCCcc
Confidence 46889999999999987543 68999998 45566665555432 12 224568999999
Q ss_pred eEEEeeCCCcEEEEEecCCccee-EEE------------------ecc-------------cceeeeEEEEcCCCcEEEe
Q psy18231 474 QIFCGSSDGKIYKWQLVDSSQIS-TLI------------------HSV-------------GKAVVNSLCSHPTRKHIMS 521 (540)
Q Consensus 474 ~l~s~s~dg~i~iwd~~~~~~~~-~~~------------------~~~-------------~~~~v~~l~~s~d~~~l~s 521 (540)
++++|+..+.++++++..|.... ++. ..+ ....+...+|+|..+.+|.
T Consensus 343 ~v~TGsy~n~frvf~~~~gsk~d~tl~asr~~~~~~~~~k~~~V~~~g~r~~~~~~vd~ldf~kkilh~aWhp~en~ia~ 422 (433)
T KOG1354|consen 343 YVMTGSYNNVFRVFNLARGSKEDFTLEASRKNMKPRKVLKLRLVSSSGKRKRDEISVDALDFRKKILHTAWHPKENSIAV 422 (433)
T ss_pred eEecccccceEEEecCCCCcceeecccccccCCcccccccceeeecCCCccccccccchhhhhhHHHhhccCCccceeee
Confidence 99999999999999965442211 000 000 0123566789999999988
Q ss_pred ecCCeeEEE
Q psy18231 522 ACGNNVKLW 530 (540)
Q Consensus 522 ~~d~~i~iw 530 (540)
+..+.+.|+
T Consensus 423 aatnnlyif 431 (433)
T KOG1354|consen 423 AATNNLYIF 431 (433)
T ss_pred eecCceEEe
Confidence 886666665
|
|
| >KOG2111|consensus | Back alignment and domain information |
|---|
Probab=99.70 E-value=7.6e-15 Score=125.32 Aligned_cols=156 Identities=13% Similarity=0.203 Sum_probs=124.8
Q ss_pred ccccEEEEEecCCeeEeeeCCCeEEEEeCC-CCceEEeeeC----CceEEEEEecCCcEEEe-ecCCCeEEEEeccccch
Q psy18231 377 ARDSITSVHVSDHEILTASLDCRIRRYDIR-TGNLVTDYVG----EPIVDACFTRDCQCILT-CSTDECLRLFDKATGEL 450 (540)
Q Consensus 377 ~~~~v~~l~~~~~~l~~~~~dg~i~iwd~~-~~~~~~~~~~----~~i~~~~~sp~~~~l~~-~~~dg~i~i~d~~~~~~ 450 (540)
...+|.++.+.++.+++.- .+.|.+|... +.+.++.+.. ....+++-+.+..+||. |..-|.|.|-|+...+.
T Consensus 93 f~~~I~~V~l~r~riVvvl-~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~GqvQi~dL~~~~~ 171 (346)
T KOG2111|consen 93 FNSEIKAVKLRRDRIVVVL-ENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKTGQVQIVDLASTKP 171 (346)
T ss_pred eccceeeEEEcCCeEEEEe-cCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCCccceEEEEEhhhcCc
Confidence 3578889999997777764 4679999987 4555555542 23333333334445555 44579999999987655
Q ss_pred --hhhhccCcCCcceEEEEecCCCCeEEEeeCCCc-EEEEEecCCcceeEEEecccceeeeEEEEcCCCcEEEeec-CCe
Q psy18231 451 --LEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGK-IYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC-GNN 526 (540)
Q Consensus 451 --~~~~~~~~~~v~~~~~~~s~~~~~l~s~s~dg~-i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~-d~~ 526 (540)
...+.+|.+.|.++ +.+.+|..+||+|..|+ |||||..+|+++.+++.......|.+++|||++.+|++++ -|+
T Consensus 172 ~~p~~I~AH~s~Iacv--~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s~LavsSdKgT 249 (346)
T KOG2111|consen 172 NAPSIINAHDSDIACV--ALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSSWLAVSSDKGT 249 (346)
T ss_pred CCceEEEcccCceeEE--EEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCccEEEEEcCCCe
Confidence 47788999999998 78899999999999998 8999999999999999777778999999999999999999 899
Q ss_pred eEEEEcccc
Q psy18231 527 VKLWTAEED 535 (540)
Q Consensus 527 i~iw~~~~~ 535 (540)
|.|+.+...
T Consensus 250 lHiF~l~~~ 258 (346)
T KOG2111|consen 250 LHIFSLRDT 258 (346)
T ss_pred EEEEEeecC
Confidence 999998764
|
|
| >KOG1272|consensus | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.9e-16 Score=141.48 Aligned_cols=263 Identities=14% Similarity=0.186 Sum_probs=202.1
Q ss_pred CeEEEEeCCCCCEEEEeeCCCcEEEEcCCCCeeEEEeecCCcceeEEEEeeCCCeEEEeeCCCeEEEEEcCCCceeEecc
Q psy18231 166 GLMHTRFPVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPVRRWR 245 (540)
Q Consensus 166 ~v~~v~~spdg~~lat~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~ 245 (540)
.-..+.|+.+|+.|+.|+..|.|..+|+.++++...+. -...|.++.|..+.+++|++- ...+.||| ..|..++.++
T Consensus 131 GPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~-v~Etv~Dv~~LHneq~~AVAQ-K~y~yvYD-~~GtElHClk 207 (545)
T KOG1272|consen 131 GPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEIN-VMETVRDVTFLHNEQFFAVAQ-KKYVYVYD-NNGTELHCLK 207 (545)
T ss_pred CCeeeeecCCccEEEecCCccceeeeecccceeeeeee-hhhhhhhhhhhcchHHHHhhh-hceEEEec-CCCcEEeehh
Confidence 34678899999999999999999999999999999887 367799999998887777664 57899999 5788888887
Q ss_pred ccCCceeEEEECCCCCEEEEecCCCcEEEEEecCCCCCCcchhhhhHhhhhcCCceeEEEEeecccccccccCceeeEEE
Q psy18231 246 EHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHLSNGLLTKLVF 325 (540)
Q Consensus 246 ~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (540)
.| ..|..+.|.|.--+|++++..|.++.-|+.+++.
T Consensus 208 ~~-~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~Gkl------------------------------------------- 243 (545)
T KOG1272|consen 208 RH-IRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKL------------------------------------------- 243 (545)
T ss_pred hc-CchhhhcccchhheeeecccCCceEEEeechhhh-------------------------------------------
Confidence 65 4689999999888999999999999999998872
Q ss_pred eeeecccccceeeeeeccceeEEEeecccceecccccccccccchhhhhhcccccEEEEEecC--CeeEeeeCCCeEEEE
Q psy18231 326 AFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEARDSITSVHVSD--HEILTASLDCRIRRY 403 (540)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~--~~l~~~~~dg~i~iw 403 (540)
+..+....+.+..+.-+| ..+-+|...|+|.+|
T Consensus 244 ---------------------------------------------Va~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlW 278 (545)
T KOG1272|consen 244 ---------------------------------------------VASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLW 278 (545)
T ss_pred ---------------------------------------------hHHHHccCCccchhhcCCccceEEEcCCCceEEec
Confidence 223344456666777777 567788999999999
Q ss_pred eCCCCceEEeee--CCceEEEEEecCCcEEEeecCCCeEEEEeccccchhhhhccCcCCcceEEEEecCCCCeEEEeeCC
Q psy18231 404 DIRTGNLVTDYV--GEPIVDACFTRDCQCILTCSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSD 481 (540)
Q Consensus 404 d~~~~~~~~~~~--~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~s~~~~~l~s~s~d 481 (540)
...+.+++..+. .++|.++++.++|+++++.+.|..++|||++....+.++.. ..+...+ ++|..| +++.+..
T Consensus 279 SP~skePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~t-p~~a~~l--s~Sqkg--lLA~~~G 353 (545)
T KOG1272|consen 279 SPNSKEPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRT-PHPASNL--SLSQKG--LLALSYG 353 (545)
T ss_pred CCCCcchHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccccceeec-CCCcccc--cccccc--ceeeecC
Confidence 999988876664 46899999999999999999999999999998876666554 2223334 666554 3444445
Q ss_pred CcEEEEEe-cCCc--ceeEEEecccceeeeEEEEcCCCcEEEeec-CC
Q psy18231 482 GKIYKWQL-VDSS--QISTLIHSVGKAVVNSLCSHPTRKHIMSAC-GN 525 (540)
Q Consensus 482 g~i~iwd~-~~~~--~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~-d~ 525 (540)
..|.||.- ..+. .-.......-.++|..+.|.|-...|-.|. .|
T Consensus 354 ~~v~iw~d~~~~s~~~~~pYm~H~~~~~V~~l~FcP~EDvLGIGH~~G 401 (545)
T KOG1272|consen 354 DHVQIWKDALKGSGHGETPYMNHRCGGPVEDLRFCPYEDVLGIGHAGG 401 (545)
T ss_pred CeeeeehhhhcCCCCCCcchhhhccCcccccceeccHHHeeeccccCC
Confidence 57999962 2211 111111112235899999999888877776 44
|
|
| >KOG2315|consensus | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.1e-14 Score=131.96 Aligned_cols=320 Identities=11% Similarity=0.129 Sum_probs=192.7
Q ss_pred cCeEEEEeCCCCCEEEEeeCCCcEEEEcCCCCeeEEEeecCCcceeEEEEeeCCCeEEEe-----eC-----CCeEEEEE
Q psy18231 165 SGLMHTRFPVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASG-----AS-----DKSVILWE 234 (540)
Q Consensus 165 ~~v~~v~~spdg~~lat~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~-----s~-----dg~i~iwd 234 (540)
.+++..++|++|+++|.+. +..++|++..++..+.+... ..++++.|+|-+++|.+- .. .-.+++|+
T Consensus 35 ~~~~v~~~S~~G~lfA~~~-~~~v~i~~~~~~~~~lt~~~--~~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~~ 111 (566)
T KOG2315|consen 35 RPCNVFAYSNNGRLFAYSD-NQVVKVFEIATLKVVLCVEL--KKTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVLVYN 111 (566)
T ss_pred CcceeEEEcCCCcEEEEEc-CCeEEEEEccCCcEEEEecc--ceeeeeeecccccccccccccccccCCCCCCCceeeee
Confidence 3467889999999888765 78999999988865544442 288999999999998752 11 24578999
Q ss_pred cCCCceeEeccccCCceeEEEECCCCCEEEEecCCCcEEEEEecCCCCCCcchhhhhHhhhhcCCceeEEEEeecccccc
Q psy18231 235 VTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNH 314 (540)
Q Consensus 235 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (540)
++++.....+......-++..|++|..+.+-- ..+.+.+|++...+..... .....+..+..++.+.
T Consensus 112 vet~~~~s~~q~k~Q~~W~~qfs~dEsl~arl-v~nev~f~~~~~f~~~~~k------------l~~~~i~~f~lSpgp~ 178 (566)
T KOG2315|consen 112 VETGVQRSQIQKKMQNGWVPQFSIDESLAARL-VSNEVQFYDLGSFKTIQHK------------LSVSGITMLSLSPGPE 178 (566)
T ss_pred eccceehhheehhhhcCcccccccchhhhhhh-hcceEEEEecCCccceeee------------eeccceeeEEecCCCC
Confidence 99976555554333333689999987654433 2467999998774411000 0011111111111100
Q ss_pred cccCceeeEEEeeeecccccceeeeeeccceeEEEeecccceecccccccccccchhhhhhcccccEEEEEecC---Cee
Q psy18231 315 LSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEARDSITSVHVSD---HEI 391 (540)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~---~~l 391 (540)
...+..+.... -.....++++...... ....+..-.-....-..+.|++ .+|
T Consensus 179 ------~~~vAvyvPe~---------kGaPa~vri~~~~~~~----------~~~~~a~ksFFkadkvqm~WN~~gt~LL 233 (566)
T KOG2315|consen 179 ------PPFVAVYVPEK---------KGAPASVRIYKYPEEG----------QHQPVANKSFFKADKVQMKWNKLGTALL 233 (566)
T ss_pred ------CceEEEEccCC---------CCCCcEEEEecccccc----------ccchhhhccccccceeEEEeccCCceEE
Confidence 00000000000 0001111111111000 0000000001111223455654 333
Q ss_pred EeeeC--C---------CeEEEEeCCCCceEEeee-CCceEEEEEecCCcEEEe--ecCCCeEEEEeccccchhhhhccC
Q psy18231 392 LTASL--D---------CRIRRYDIRTGNLVTDYV-GEPIVDACFTRDCQCILT--CSTDECLRLFDKATGELLEEYKGH 457 (540)
Q Consensus 392 ~~~~~--d---------g~i~iwd~~~~~~~~~~~-~~~i~~~~~sp~~~~l~~--~~~dg~i~i~d~~~~~~~~~~~~~ 457 (540)
+.++. | .++++++++...+.-.+. .++|.++.|+|+++.+++ |-.=-++.|||++ +.++..+ .
T Consensus 234 vLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr-~~~v~df--~ 310 (566)
T KOG2315|consen 234 VLASTDVDKTNASYYGEQTLYLLATQGESVSVPLLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR-GKPVFDF--P 310 (566)
T ss_pred EEEEEeecCCCccccccceEEEEEecCceEEEecCCCCCceEEEECCCCCEEEEEEecccceEEEEcCC-CCEeEeC--C
Confidence 33322 2 367888888556665665 489999999999987666 4456789999985 5555444 3
Q ss_pred cCCcceEEEEecCCCCeEEEeeC---CCcEEEEEecCCcceeEEEecccceeeeEEEEcCCCcEEEeec-------CCee
Q psy18231 458 KSGDFRIECCLDSKDSQIFCGSS---DGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC-------GNNV 527 (540)
Q Consensus 458 ~~~v~~~~~~~s~~~~~l~s~s~---dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~-------d~~i 527 (540)
+++-..+ -|+|.|++|+.++. -|.|-|||+.+.+++..+. .. .-+-+.|+|||++++|+. |+.+
T Consensus 311 egpRN~~--~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~--a~--~tt~~eW~PdGe~flTATTaPRlrvdNg~ 384 (566)
T KOG2315|consen 311 EGPRNTA--FFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFK--AA--NTTVFEWSPDGEYFLTATTAPRLRVDNGI 384 (566)
T ss_pred CCCccce--EECCCCCEEEEeecCCCCCceEEEeccchhhccccc--cC--CceEEEEcCCCcEEEEEeccccEEecCCe
Confidence 3444455 79999999888775 4789999999999998887 33 356689999999999874 5789
Q ss_pred EEEEccc
Q psy18231 528 KLWTAEE 534 (540)
Q Consensus 528 ~iw~~~~ 534 (540)
+||+..+
T Consensus 385 KiwhytG 391 (566)
T KOG2315|consen 385 KIWHYTG 391 (566)
T ss_pred EEEEecC
Confidence 9999864
|
|
| >KOG2321|consensus | Back alignment and domain information |
|---|
Probab=99.69 E-value=5.3e-15 Score=135.83 Aligned_cols=278 Identities=13% Similarity=0.127 Sum_probs=193.8
Q ss_pred eeeeecCeEEEEeCCCCCEE-EEeeCCCcEEEEcCCCCeeEEEeecCCcceeEEEEeeCCCeEEEeeCCCeEEEEEcCCC
Q psy18231 160 ELFVLSGLMHTRFPVDGSYC-LTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTG 238 (540)
Q Consensus 160 ~~~h~~~v~~v~~spdg~~l-at~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~ 238 (540)
.+.|...-+.|..+|||+|+ |||...-.|++||+.+..+...-.-....|.-.-.+.|-..++---.|.+|.+..- -|
T Consensus 47 dfe~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak-~G 125 (703)
T KOG2321|consen 47 DFEMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAK-YG 125 (703)
T ss_pred hcCCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeehhh-cC
Confidence 45577888999999999996 57778899999999876654443323445555555555555666666777766532 22
Q ss_pred ceeEeccccCCceeEEEECCCCCEEEEecCCCcEEEEEecCCCCCCcchhhhhHhhhhcCCceeEEEEeecccccccccC
Q psy18231 239 QPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHLSNG 318 (540)
Q Consensus 239 ~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (540)
.. ..++- ...-..++++.-.--|+.++....|.-++++.+.-
T Consensus 126 ~h-y~~RI-P~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrf------------------------------------ 167 (703)
T KOG2321|consen 126 RH-YRTRI-PKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRF------------------------------------ 167 (703)
T ss_pred ee-eeeec-CcCCccccccCCCccEEEeecCcceEEEEcccccc------------------------------------
Confidence 11 11110 11224455544222244444455677788877751
Q ss_pred ceeeEEEeeeecccccceeeeeeccceeEEEeecccceecccccccccccchhhhhhcccccEEEEEecC--CeeEeeeC
Q psy18231 319 LLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEARDSITSVHVSD--HEILTASL 396 (540)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~--~~l~~~~~ 396 (540)
+..+....+.++++..++ .+|++|+.
T Consensus 168 ----------------------------------------------------L~P~~~~~~~lN~v~in~~hgLla~Gt~ 195 (703)
T KOG2321|consen 168 ----------------------------------------------------LNPFETDSGELNVVSINEEHGLLACGTE 195 (703)
T ss_pred ----------------------------------------------------ccccccccccceeeeecCccceEEeccc
Confidence 223444457888999998 88888999
Q ss_pred CCeEEEEeCCCCceEEeeeC-------------CceEEEEEecCCcEEEeecCCCeEEEEeccccchhhhhccCcCCcce
Q psy18231 397 DCRIRRYDIRTGNLVTDYVG-------------EPIVDACFTRDCQCILTCSTDECLRLFDKATGELLEEYKGHKSGDFR 463 (540)
Q Consensus 397 dg~i~iwd~~~~~~~~~~~~-------------~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~ 463 (540)
+|.+..||.+....+..+.- ..|+++.|+.+|-.+++|+.+|.+.|||+++.+++.. +.|...+..
T Consensus 196 ~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~-kdh~~e~pi 274 (703)
T KOG2321|consen 196 DGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLV-KDHGYELPI 274 (703)
T ss_pred CceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceee-cccCCccce
Confidence 99999999998876655531 2499999999999999999999999999999887654 346555555
Q ss_pred EEEEecCCC--CeEEEeeCCCcEEEEEecCCcceeEEEecccceeeeEEEEcCCCcEEEeec-CCeeEEEEcc
Q psy18231 464 IECCLDSKD--SQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC-GNNVKLWTAE 533 (540)
Q Consensus 464 ~~~~~s~~~--~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~-d~~i~iw~~~ 533 (540)
..+.|.+.+ ..+++. ....++|||-.+|+....+. ....++.+++-|++-+++++- +..+..|=++
T Consensus 275 ~~l~~~~~~~q~~v~S~-Dk~~~kiWd~~~Gk~~asiE---pt~~lND~C~~p~sGm~f~Ane~~~m~~yyiP 343 (703)
T KOG2321|consen 275 KKLDWQDTDQQNKVVSM-DKRILKIWDECTGKPMASIE---PTSDLNDFCFVPGSGMFFTANESSKMHTYYIP 343 (703)
T ss_pred eeecccccCCCceEEec-chHHhhhcccccCCceeecc---ccCCcCceeeecCCceEEEecCCCcceeEEcc
Confidence 555776553 345554 34679999999999999887 445599999999999999998 6666555443
|
|
| >KOG1272|consensus | Back alignment and domain information |
|---|
Probab=99.69 E-value=9.4e-17 Score=143.44 Aligned_cols=228 Identities=14% Similarity=0.144 Sum_probs=188.2
Q ss_pred CcceeEEEEeeCCCeEEEeeCCCeEEEEEcCCCceeEeccccCCceeEEEECCCCCEEEEecCCCcEEEEEecCCCCCCc
Q psy18231 206 AHEVNDATAACDSSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPI 285 (540)
Q Consensus 206 ~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 285 (540)
.-.-+.+.++.+|++|+.|+.-|.|-.+|+.+++....+. -...|.++.|..+.+++|++- ...+.|||-..-+.+++
T Consensus 129 eFGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~-v~Etv~Dv~~LHneq~~AVAQ-K~y~yvYD~~GtElHCl 206 (545)
T KOG1272|consen 129 EFGPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEIN-VMETVRDVTFLHNEQFFAVAQ-KKYVYVYDNNGTELHCL 206 (545)
T ss_pred ccCCeeeeecCCccEEEecCCccceeeeecccceeeeeee-hhhhhhhhhhhcchHHHHhhh-hceEEEecCCCcEEeeh
Confidence 3445678999999999999999999999999999887764 467899999999888888764 57899998654432221
Q ss_pred chhhhhHhhhhcCCceeEEEEeecccccccccCceeeEEEeeeecccccceeeeeeccceeEEEeecccceecccccccc
Q psy18231 286 QVRCLNEALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPIS 365 (540)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 365 (540)
.
T Consensus 207 k------------------------------------------------------------------------------- 207 (545)
T KOG1272|consen 207 K------------------------------------------------------------------------------- 207 (545)
T ss_pred h-------------------------------------------------------------------------------
Confidence 1
Q ss_pred cccchhhhhhcccccEEEEEecC--CeeEeeeCCCeEEEEeCCCCceEEeeeC--CceEEEEEecCCcEEEeecCCCeEE
Q psy18231 366 IHNSCFQALKEARDSITSVHVSD--HEILTASLDCRIRRYDIRTGNLVTDYVG--EPIVDACFTRDCQCILTCSTDECLR 441 (540)
Q Consensus 366 ~~~~~~~~~~~~~~~v~~l~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~--~~i~~~~~sp~~~~l~~~~~dg~i~ 441 (540)
....|..+.|-| -+|++++..|.++.-|+.+|+.+..+.. +.+..++-+|-...+-+|..+|+|.
T Consensus 208 -----------~~~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVS 276 (545)
T KOG1272|consen 208 -----------RHIRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVS 276 (545)
T ss_pred -----------hcCchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEE
Confidence 134667788888 5577778899999999999999888764 6788889999989999999999999
Q ss_pred EEeccccchhhhhccCcCCcceEEEEecCCCCeEEEeeCCCcEEEEEecCCcceeEEEecccceeeeEEEEcCCCcEEEe
Q psy18231 442 LFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMS 521 (540)
Q Consensus 442 i~d~~~~~~~~~~~~~~~~v~~~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s 521 (540)
+|.....+++..+..|.++|.++ ++.++|+|+||.+.|..++|||++....+.++.. ..+...+++|..| +||.
T Consensus 277 lWSP~skePLvKiLcH~g~V~si--Av~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~t---p~~a~~ls~Sqkg-lLA~ 350 (545)
T KOG1272|consen 277 LWSPNSKEPLVKILCHRGPVSSI--AVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRT---PHPASNLSLSQKG-LLAL 350 (545)
T ss_pred ecCCCCcchHHHHHhcCCCcceE--EECCCCcEEeecccccceeEeeeccccccceeec---CCCcccccccccc-ceee
Confidence 99999999999999999999999 8999999999999999999999999888777763 3457788888554 4444
Q ss_pred ecCCeeEEEE
Q psy18231 522 ACGNNVKLWT 531 (540)
Q Consensus 522 ~~d~~i~iw~ 531 (540)
+-...|.||.
T Consensus 351 ~~G~~v~iw~ 360 (545)
T KOG1272|consen 351 SYGDHVQIWK 360 (545)
T ss_pred ecCCeeeeeh
Confidence 4467899995
|
|
| >KOG1524|consensus | Back alignment and domain information |
|---|
Probab=99.68 E-value=5.6e-16 Score=140.92 Aligned_cols=198 Identities=19% Similarity=0.254 Sum_probs=152.8
Q ss_pred cccceeeeecccc-cc-eeeeeecCeEEEEeCCCCCEEEEeeCCCcEEEEcCCCCeeEEEeecCCcceeEEEEeeCCCeE
Q psy18231 144 PKEWSIRVYRPLT-VN-RELFVLSGLMHTRFPVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQI 221 (540)
Q Consensus 144 ~~~~~i~~~~~~~-~~-~~~~h~~~v~~v~~spdg~~lat~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l 221 (540)
+.|+.+.+.+-.. .+ ....|.+++.|-.|+|||.-|++++.||.|++|. .+|.+..++-....+|+|++|.|+.+.+
T Consensus 82 s~DGkf~il~k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWS-rsGMLRStl~Q~~~~v~c~~W~p~S~~v 160 (737)
T KOG1524|consen 82 SNDGRFVILNKSARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWS-RSGMLRSTVVQNEESIRCARWAPNSNSI 160 (737)
T ss_pred cCCceEEEecccchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEe-ccchHHHHHhhcCceeEEEEECCCCCce
Confidence 4555555544332 12 2346999999999999999999999999999999 5776666666678899999999988776
Q ss_pred EEeeCCCeEEEEEcCCCceeEeccccCCceeEEEECCCCCEEEEecCCCcEEEEEecCCCCCCcchhhhhHhhhhcCCce
Q psy18231 222 ASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQVRCLNEALKEARDSI 301 (540)
Q Consensus 222 ~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (540)
+-+.. +.+.|=.+.....+-..+.|.+-|.++.|++..+++++|++|-..++||-....
T Consensus 161 l~c~g-~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~G~~-------------------- 219 (737)
T KOG1524|consen 161 VFCQG-GHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQGAN-------------------- 219 (737)
T ss_pred EEecC-CeEEEeecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeecccCcc--------------------
Confidence 65543 567776777666677788999999999999999999999999999999965432
Q ss_pred eEEEEeecccccccccCceeeEEEeeeecccccceeeeeeccceeEEEeecccceecccccccccccchhhhhhcccccE
Q psy18231 302 TSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEARDSI 381 (540)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 381 (540)
+..-..|..+|
T Consensus 220 ---------------------------------------------------------------------Lf~S~~~ey~I 230 (737)
T KOG1524|consen 220 ---------------------------------------------------------------------LFTSAAEEYAI 230 (737)
T ss_pred ---------------------------------------------------------------------cccCChhccce
Confidence 12345688899
Q ss_pred EEEEecC-CeeEeeeCCCeEEEEeCCCCceEEeeeCCceEEEEEecCCcEEEeecCCCeEEE
Q psy18231 382 TSVHVSD-HEILTASLDCRIRRYDIRTGNLVTDYVGEPIVDACFTRDCQCILTCSTDECLRL 442 (540)
Q Consensus 382 ~~l~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~i 442 (540)
++++|+| ..+++++. .++|+ .....+.|..++||+||..++.|+..|.+.+
T Consensus 231 TSva~npd~~~~v~S~-nt~R~---------~~p~~GSifnlsWS~DGTQ~a~gt~~G~v~~ 282 (737)
T KOG1524|consen 231 TSVAFNPEKDYLLWSY-NTARF---------SSPRVGSIFNLSWSADGTQATCGTSTGQLIV 282 (737)
T ss_pred eeeeeccccceeeeee-eeeee---------cCCCccceEEEEEcCCCceeeccccCceEEE
Confidence 9999999 55555543 34442 2222367999999999999999999987654
|
|
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=2.6e-14 Score=138.65 Aligned_cols=231 Identities=14% Similarity=0.094 Sum_probs=154.3
Q ss_pred CcEEEEcCCCCeeEEEeecCCcceeEEEEeeCCCeEEEeeC---CCeEEEEEcCCCceeEeccccCCceeEEEECCCCCE
Q psy18231 186 KKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGAS---DKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSV 262 (540)
Q Consensus 186 g~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~---dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 262 (540)
..|.+||...... ..+..+...+.+.+|||||+.|+..+. +..|.+|++.+++... +....+.+....|+|||+.
T Consensus 179 ~~l~~~d~dg~~~-~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~-l~~~~~~~~~~~~SPDG~~ 256 (429)
T PRK03629 179 YELRVSDYDGYNQ-FVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ-VASFPRHNGAPAFSPDGSK 256 (429)
T ss_pred eeEEEEcCCCCCC-EEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ccCCCCCcCCeEECCCCCE
Confidence 4789999765443 444456778999999999999986543 4579999998886433 2223334556899999998
Q ss_pred EEEe-cCCC--cEEEEEecCCCCCCcchhhhhHhhhhcCCceeEEEEeecccccccccCceeeEEEeeeecccccceeee
Q psy18231 263 VISG-SQDN--TVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGV 339 (540)
Q Consensus 263 l~s~-~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (540)
|+.. +.+| .|.+||+.+++..
T Consensus 257 La~~~~~~g~~~I~~~d~~tg~~~-------------------------------------------------------- 280 (429)
T PRK03629 257 LAFALSKTGSLNLYVMDLASGQIR-------------------------------------------------------- 280 (429)
T ss_pred EEEEEcCCCCcEEEEEECCCCCEE--------------------------------------------------------
Confidence 8754 4455 4888888765421
Q ss_pred eeccceeEEEeecccceecccccccccccchhhhhhcccccEEEEEecC--CeeEeeeC-CC--eEEEEeCCCCceEEee
Q psy18231 340 LMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEARDSITSVHVSD--HEILTASL-DC--RIRRYDIRTGNLVTDY 414 (540)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~--~~l~~~~~-dg--~i~iwd~~~~~~~~~~ 414 (540)
.+..+...+....|+| +.++..+. ++ .|.++|+.+++.....
T Consensus 281 ---------------------------------~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~~lt 327 (429)
T PRK03629 281 ---------------------------------QVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQRIT 327 (429)
T ss_pred ---------------------------------EccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeEEee
Confidence 1111223455678888 55655554 34 4555577766543222
Q ss_pred -eCCceEEEEEecCCcEEEeecCC---CeEEEEeccccchhhhhccCcCCcceEEEEecCCCCeEEEeeCCCc---EEEE
Q psy18231 415 -VGEPIVDACFTRDCQCILTCSTD---ECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGK---IYKW 487 (540)
Q Consensus 415 -~~~~i~~~~~sp~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~s~~~~~l~s~s~dg~---i~iw 487 (540)
.+.......|+|||++++..+.+ ..|.+||+.+++.. .+... ...... .|+|||++|+.++.++. ++++
T Consensus 328 ~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~-~Lt~~-~~~~~p--~~SpDG~~i~~~s~~~~~~~l~~~ 403 (429)
T PRK03629 328 WEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLTDT-FLDETP--SIAPNGTMVIYSSSQGMGSVLNLV 403 (429)
T ss_pred cCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeE-EeCCC-CCCCCc--eECCCCCEEEEEEcCCCceEEEEE
Confidence 23456678999999998876543 35888999877543 22221 112223 79999999999888775 5666
Q ss_pred EecCCcceeEEEecccceeeeEEEEcC
Q psy18231 488 QLVDSSQISTLIHSVGKAVVNSLCSHP 514 (540)
Q Consensus 488 d~~~~~~~~~~~~~~~~~~v~~l~~s~ 514 (540)
++ +++....+. .|.+.+...+|+|
T Consensus 404 ~~-~G~~~~~l~--~~~~~~~~p~Wsp 427 (429)
T PRK03629 404 ST-DGRFKARLP--ATDGQVKFPAWSP 427 (429)
T ss_pred EC-CCCCeEECc--cCCCCcCCcccCC
Confidence 65 677777777 6888899999997
|
|
| >KOG2334|consensus | Back alignment and domain information |
|---|
Probab=99.67 E-value=6.2e-17 Score=143.56 Aligned_cols=112 Identities=27% Similarity=0.519 Sum_probs=99.2
Q ss_pred eecCCceEEeccCCCCCHHHHHHHHHcCCCEEEeeeeecccccccchhhcccccc---------------CC-CCCCEEE
Q psy18231 12 TLLKNLKHCDSTLWTSKLNFRQLVRSHNVDLCFTPMIIADSFIKSSKARNNEFST---------------SP-EDTPLVV 75 (540)
Q Consensus 12 ~~~~~~~~~ap~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~-~~~~~~~ 75 (540)
+.-.++.+||||++++++|.|.|+-+||||++|||.|...+++++.+..+..+.+ +| +...+++
T Consensus 7 l~y~nk~iLApMvr~G~lpmrLLal~~Gadlv~~peIVdkKLIe~ir~~NealgtIDfv~p~~~~vvfr~~~~e~~rlil 86 (477)
T KOG2334|consen 7 LFYRNKLILAPMVRAGELPMRLLALQYGADLVYTPEIVDKKLIECIRVENEALGTIDFVDPSDSTVVFRTCPAENSRLIL 86 (477)
T ss_pred hhhcCcEeeehHHHhccchHHHHHHHhccceecChhhhhHHHHhccccccccccceeeecCCcceEEEEechhhcCeEEE
Confidence 3446789999999999999999999999999999999999999888776544332 32 3456999
Q ss_pred EEecCChhHHHHHHHHhcCCCCeEeeccCCCceEEEeccccceecccc
Q psy18231 76 QFASNNHDDFVRATQYVAPHCNGVDLNCGCPQRWAIKEGYGCALLSKQ 123 (540)
Q Consensus 76 q~~~~~~~~~~~~~~~~~~~~~~id~~~gc~~~~~~~~g~g~~l~~~~ 123 (540)
|+.+++++...++|+.+..+..+||+|||||.......|.|++||.++
T Consensus 87 Q~gT~sa~lA~e~A~lv~nDvsgidiN~gCpK~fSi~~gmgaalLt~~ 134 (477)
T KOG2334|consen 87 QIGTASAELALEAAKLVDNDVSGIDINMGCPKEFSIHGGMGAALLTDP 134 (477)
T ss_pred EecCCcHHHHHHHHHHhhcccccccccCCCCCccccccCCCchhhcCH
Confidence 999999999999999999999999999999999999999999999985
|
|
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=99.66 E-value=2.5e-13 Score=127.54 Aligned_cols=323 Identities=10% Similarity=0.030 Sum_probs=177.7
Q ss_pred ccccceeeeecccccc--eeeeeecCe-EEEEeCCCCCEEEEeeCCCcEEEEcCCCCeeEEEeecCCcceeEEEEeeCCC
Q psy18231 143 LPKEWSIRVYRPLTVN--RELFVLSGL-MHTRFPVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSS 219 (540)
Q Consensus 143 ~~~~~~i~~~~~~~~~--~~~~h~~~v-~~v~~spdg~~lat~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~ 219 (540)
...++.+.+.+..+.+ ..+...+.+ ..+.|+|||+++++++.||.|.++|+.+++.+++++. .....++++|+||+
T Consensus 12 ~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~-G~~~~~i~~s~DG~ 90 (369)
T PF02239_consen 12 ERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKV-GGNPRGIAVSPDGK 90 (369)
T ss_dssp EGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE--SSEEEEEEE--TTT
T ss_pred ecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEec-CCCcceEEEcCCCC
Confidence 3456678888876644 223222344 4478999999999999999999999999999999985 44568899999999
Q ss_pred eEEEee-CCCeEEEEEcCCCceeEeccc-------cCCceeEEEECCCCCEEEEe-cCCCcEEEEEecCCCCCCcchhhh
Q psy18231 220 QIASGA-SDKSVILWEVTTGQPVRRWRE-------HASKVTCVKFNEDSSVVISG-SQDNTVMMWDVKSRSHHPIQVRCL 290 (540)
Q Consensus 220 ~l~s~s-~dg~i~iwd~~~~~~~~~~~~-------h~~~v~~~~~~~~~~~l~s~-~~dg~i~iwd~~~~~~~~~~~~~~ 290 (540)
+++++. .++.+.++|.++.+.++.+.. ....+..+..+|....++.. -+.+.|.+-|....+.........
T Consensus 91 ~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~ 170 (369)
T PF02239_consen 91 YVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKV 170 (369)
T ss_dssp EEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE-
T ss_pred EEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeecc
Confidence 988775 589999999999999887653 23567888888887755544 445777777766653211110000
Q ss_pred hHhhhhcCCceeEEEEeecccccccccCceeeEEEeeeecccccceeeeeeccceeEEEeecccceecccccccccccch
Q psy18231 291 NEALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSC 370 (540)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (540)
... .+.....+ .+............+.+.+.........+.........
T Consensus 171 g~~----------~~D~~~dp---------------------dgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~ 219 (369)
T PF02239_consen 171 GRF----------PHDGGFDP---------------------DGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPG 219 (369)
T ss_dssp -TT----------EEEEEE-T---------------------TSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEET
T ss_pred ccc----------ccccccCc---------------------ccceeeecccccceeEEEeeccceEEEEeecccccccc
Confidence 000 00000000 00000111122223333343333322222111100000
Q ss_pred hhhhhcc--cccEEEEEecCCeeEeeeCCCeEEEEeCCCCceEEeeeC--CceEEEEEecCCcEEEee----cCCCeEEE
Q psy18231 371 FQALKEA--RDSITSVHVSDHEILTASLDCRIRRYDIRTGNLVTDYVG--EPIVDACFTRDCQCILTC----STDECLRL 442 (540)
Q Consensus 371 ~~~~~~~--~~~v~~l~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~--~~i~~~~~sp~~~~l~~~----~~dg~i~i 442 (540)
...--.| .++++...-.....++.-....+.+||..+.+.++++.. .+ .-+..+|+++++.+. ...++|.+
T Consensus 220 ~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~g-lFi~thP~s~~vwvd~~~~~~~~~v~v 298 (369)
T PF02239_consen 220 PGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGG-LFIKTHPDSRYVWVDTFLNPDADTVQV 298 (369)
T ss_dssp TEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS---EE--TT-SEEEEE-TT-SSHT-EEE
T ss_pred ccccccCCCcceEEeeccccceecccccCCccccchhhcCeEEEEEECCCCc-ceeecCCCCccEEeeccCCCCCceEEE
Confidence 0000011 122322222222222333334566799999999988874 44 777889999999988 44689999
Q ss_pred EeccccchhhhhccCcCCcceEEEEecCCCCeEEEeeCC--CcEEEEEecCCcceeEEE
Q psy18231 443 FDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSD--GKIYKWQLVDSSQISTLI 499 (540)
Q Consensus 443 ~d~~~~~~~~~~~~~~~~v~~~~~~~s~~~~~l~s~s~d--g~i~iwd~~~~~~~~~~~ 499 (540)
+|.++.+.+.++....+ ...+.+.|+++|+++.....+ +.|.+||..+.+.+..+.
T Consensus 299 iD~~tl~~~~~i~~~~~-~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~Tl~~~~~i~ 356 (369)
T PF02239_consen 299 IDKKTLKVVKTITPGPG-KRVVHMEFNPDGKEVWVSVWDGNGAIVVYDAKTLKEKKRIP 356 (369)
T ss_dssp EECCGTEEEE-HHHHHT---EEEEEE-TTSSEEEEEEE--TTEEEEEETTTTEEEEEEE
T ss_pred EECcCcceeEEEeccCC-CcEeccEECCCCCEEEEEEecCCCEEEEEECCCcEEEEEEE
Confidence 99999987777653332 113455899999986655443 369999999999988886
|
... |
| >cd02911 arch_FMN Archeal FMN-binding domain | Back alignment and domain information |
|---|
Probab=99.65 E-value=8.4e-17 Score=139.88 Aligned_cols=105 Identities=16% Similarity=0.178 Sum_probs=83.1
Q ss_pred ceEEeccCCCCCHHHHH-HHHHcCCCEE------Eeeeeecccccccchhh-------------ccccccCCCCCCEEEE
Q psy18231 17 LKHCDSTLWTSKLNFRQ-LVRSHNVDLC------FTPMIIADSFIKSSKAR-------------NNEFSTSPEDTPLVVQ 76 (540)
Q Consensus 17 ~~~~ap~~~~~~~~~r~-~~~~~~~~~~------~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~q 76 (540)
+++||||+|+||.+||+ +++++|+.+. +++|..++++.++++.+ ...+ .....|+++|
T Consensus 1 ~~~lApMag~td~~f~~~~~~~~g~~~~Gg~~~d~~~~~aa~~~~~~~~~ef~~~~~~~~~~~~~~~~--~~~~~p~~vq 78 (233)
T cd02911 1 PVALASMAGITDGDFCRKRADHAGLVFLGGYNLDERTIEAARKLVKRGRKEFLPDDPLEFIEGEIKAL--KDSNVLVGVN 78 (233)
T ss_pred CceeeecCCCcCHHHHHhhCccCCEEEEcccccCHHHHHHHHHHHhcCCccccccchHHHHHHHHHHh--hccCCeEEEE
Confidence 47899999999999999 6777776655 44555544444444333 2222 2345699999
Q ss_pred EecCChhHHHHHHHHhcCCCCeEeeccCCCceEEEeccccceecccc
Q psy18231 77 FASNNHDDFVRATQYVAPHCNGVDLNCGCPQRWAIKEGYGCALLSKQ 123 (540)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~id~~~gc~~~~~~~~g~g~~l~~~~ 123 (540)
+.|++++.++++++.++++.+.||+|+|||+......|.|++||+++
T Consensus 79 i~g~~~~~~~~aa~~~~~~~~~ielN~gCP~~~v~~~g~G~~Ll~~p 125 (233)
T cd02911 79 VRSSSLEPLLNAAALVAKNAAILEINAHCRQPEMVEAGAGEALLKDP 125 (233)
T ss_pred ecCCCHHHHHHHHHHHhhcCCEEEEECCCCcHHHhcCCcchHHcCCH
Confidence 99999999999999988878999999999999999999999999985
|
This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown. |
| >KOG2111|consensus | Back alignment and domain information |
|---|
Probab=99.65 E-value=4e-13 Score=115.00 Aligned_cols=235 Identities=15% Similarity=0.189 Sum_probs=151.6
Q ss_pred eEEEEeCCCCCEEEEeeCCCcEEEEcCCCCeeEEEeecCCcceeEEEEeeCCCeEEE-eeCC------CeEEEEEcCCCc
Q psy18231 167 LMHTRFPVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIAS-GASD------KSVILWEVTTGQ 239 (540)
Q Consensus 167 v~~v~~spdg~~lat~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s-~s~d------g~i~iwd~~~~~ 239 (540)
..+++|+.|..-+++|. |.-.+||+.+.-+...+...+.+.+.-+...--.++||- |+.+ +.|.|||=...+
T Consensus 8 ~lsvs~NQD~ScFava~-~~Gfriyn~~P~ke~~~r~~~~~G~~~veMLfR~N~laLVGGg~~pky~pNkviIWDD~k~~ 86 (346)
T KOG2111|consen 8 TLSVSFNQDHSCFAVAT-DTGFRIYNCDPFKESASRQFIDGGFKIVEMLFRSNYLALVGGGSRPKYPPNKVIIWDDLKER 86 (346)
T ss_pred eeEEEEccCCceEEEEe-cCceEEEecCchhhhhhhccccCchhhhhHhhhhceEEEecCCCCCCCCCceEEEEecccCc
Confidence 44599999998888776 556889998764443333333333221111112345443 3333 479999976677
Q ss_pred eeEeccccCCceeEEEECCCCCEEEEecCCCcEEEEEecCCCCCCcchhhhhHhhhhcCCceeEEEEeecccccccccCc
Q psy18231 240 PVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHLSNGL 319 (540)
Q Consensus 240 ~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (540)
++.++ ...++|.++.+.++ .|++.- ++.|.||...+.-. .+
T Consensus 87 ~i~el-~f~~~I~~V~l~r~--riVvvl-~~~I~VytF~~n~k-~l---------------------------------- 127 (346)
T KOG2111|consen 87 CIIEL-SFNSEIKAVKLRRD--RIVVVL-ENKIYVYTFPDNPK-LL---------------------------------- 127 (346)
T ss_pred EEEEE-EeccceeeEEEcCC--eEEEEe-cCeEEEEEcCCChh-he----------------------------------
Confidence 77766 46789999999865 566554 57899999875421 00
Q ss_pred eeeEEEeeeecccccceeeeeeccceeEEEeec--ccceecccccccccccchhhhhhcccccEEEEEecC--CeeEeee
Q psy18231 320 LTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDF--LGSTQIGDVTPISIHNSCFQALKEARDSITSVHVSD--HEILTAS 395 (540)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~--~~l~~~~ 395 (540)
..+.....+..+.......+..+.++.. .|+.++.++...... .......|...|.|++.+. .++|++|
T Consensus 128 -----~~~et~~NPkGlC~~~~~~~k~~LafPg~k~GqvQi~dL~~~~~~--~p~~I~AH~s~Iacv~Ln~~Gt~vATaS 200 (346)
T KOG2111|consen 128 -----HVIETRSNPKGLCSLCPTSNKSLLAFPGFKTGQVQIVDLASTKPN--APSIINAHDSDIACVALNLQGTLVATAS 200 (346)
T ss_pred -----eeeecccCCCceEeecCCCCceEEEcCCCccceEEEEEhhhcCcC--CceEEEcccCceeEEEEcCCccEEEEec
Confidence 0111111111122222222223333222 233333333222211 2346788999999999987 8899999
Q ss_pred CCCe-EEEEeCCCCceEEeeeC----CceEEEEEecCCcEEEeecCCCeEEEEecccc
Q psy18231 396 LDCR-IRRYDIRTGNLVTDYVG----EPIVDACFTRDCQCILTCSTDECLRLFDKATG 448 (540)
Q Consensus 396 ~dg~-i~iwd~~~~~~~~~~~~----~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~ 448 (540)
..|+ |||||..+|+.+.++.. ..|++++|||++.+|++++..|+++||.++..
T Consensus 201 tkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~~ 258 (346)
T KOG2111|consen 201 TKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRDT 258 (346)
T ss_pred cCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCccEEEEEcCCCeEEEEEeecC
Confidence 9997 68999999999999975 47999999999999999999999999988753
|
|
| >KOG2139|consensus | Back alignment and domain information |
|---|
Probab=99.63 E-value=2.8e-13 Score=117.81 Aligned_cols=273 Identities=13% Similarity=0.184 Sum_probs=177.2
Q ss_pred CeEEEEeCCCCCEEEEeeCCCcEEEEcCCCCeeEEEee-cCCcceeEEEEeeC-CCeEEEeeCCCeEEEEEcCCC----c
Q psy18231 166 GLMHTRFPVDGSYCLTCGSDKKIKLWNPYRNLLLKTYG-GHAHEVNDATAACD-SSQIASGASDKSVILWEVTTG----Q 239 (540)
Q Consensus 166 ~v~~v~~spdg~~lat~~~dg~i~iwd~~~~~~~~~~~-~h~~~v~~l~~sp~-~~~l~s~s~dg~i~iwd~~~~----~ 239 (540)
.+..++|++.-.-+|++..|-.|++||-.. .....++ .....|+|++|-|. ++.|+.|+.. -|.+|..... .
T Consensus 100 dlr~~aWhqH~~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgCr~-gIciW~~s~tln~~r 177 (445)
T KOG2139|consen 100 DLRGVAWHQHIIAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGCRA-GICIWSDSRTLNANR 177 (445)
T ss_pred ceeeEeechhhhhhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeeecc-eeEEEEcCccccccc
Confidence 466788988766788999999999999665 4444454 24578999999994 4567777764 4999987432 1
Q ss_pred e----------eEeccccCCceeEEEECCCCCEEEEecC-CCcEEEEEecCCCCCCcchhhhhHhhhhcCCceeEEEEee
Q psy18231 240 P----------VRRWREHASKVTCVKFNEDSSVVISGSQ-DNTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLV 308 (540)
Q Consensus 240 ~----------~~~~~~h~~~v~~~~~~~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (540)
. +....+| .+|+++.|.+||..+++++. |..|.|||..++...++.
T Consensus 178 ~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~---------------------- 234 (445)
T KOG2139|consen 178 NIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLI---------------------- 234 (445)
T ss_pred ccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCccccc----------------------
Confidence 1 1122344 68999999999999999876 568999999998743322
Q ss_pred cccccccccCceeeEEEeeeecccccceeeeeeccceeEEEeecccceecccccccccccchhhhhhcccccEEEEEecC
Q psy18231 309 KSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEARDSITSVHVSD 388 (540)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~ 388 (540)
....+.+.-+.|+|
T Consensus 235 ------------------------------------------------------------------~~glgg~slLkwSP 248 (445)
T KOG2139|consen 235 ------------------------------------------------------------------PKGLGGFSLLKWSP 248 (445)
T ss_pred ------------------------------------------------------------------ccCCCceeeEEEcC
Confidence 12346677889999
Q ss_pred --CeeEeeeCCCeEEEEeCCCC-ceEE-eeeCCceEEEEEecCCcEEEeecCCCeEEEEecccc----c-----------
Q psy18231 389 --HEILTASLDCRIRRYDIRTG-NLVT-DYVGEPIVDACFTRDCQCILTCSTDECLRLFDKATG----E----------- 449 (540)
Q Consensus 389 --~~l~~~~~dg~i~iwd~~~~-~~~~-~~~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~----~----------- 449 (540)
+.++.++.|+..++|+.... .... .+..+.|...+|+|+|++|+.... |.-++|.+.-. .
T Consensus 249 dgd~lfaAt~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~s-gsp~lysl~f~~~~~~~~~~~~~k~~l 327 (445)
T KOG2139|consen 249 DGDVLFAATCDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFACS-GSPRLYSLTFDGEDSVFLRPQSIKRVL 327 (445)
T ss_pred CCCEEEEecccceeeeehhcccceecceeccCCceeeeeecCCCCEEEEEEc-CCceEEEEeecCCCccccCcccceeee
Confidence 89999999999999965433 2222 222368999999999998766543 33344433211 0
Q ss_pred hh------hhhcc---CcCCcceEEEEecCCCCeEEEeeCCC--------cEEEEEecCCcceeEEEe-cccceeeeEEE
Q psy18231 450 LL------EEYKG---HKSGDFRIECCLDSKDSQIFCGSSDG--------KIYKWQLVDSSQISTLIH-SVGKAVVNSLC 511 (540)
Q Consensus 450 ~~------~~~~~---~~~~v~~~~~~~s~~~~~l~s~s~dg--------~i~iwd~~~~~~~~~~~~-~~~~~~v~~l~ 511 (540)
.+ ....+ --++..++ +|.|.|.+||+.-..+ .|.+||.+..-.+.-... .........+.
T Consensus 328 liaDL~e~ti~ag~~l~cgeaq~l--awDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp~vels~cg~i~ge~P~~Is 405 (445)
T KOG2139|consen 328 LIADLQEVTICAGQRLCCGEAQCL--AWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSPPVELSYCGMIGGEYPAYIS 405 (445)
T ss_pred eeccchhhhhhcCcccccCcccee--eECCCCCEEEEEEcCCchhhhhhhhhhhhcccccCceEEEecccccCCCCceEE
Confidence 00 11111 12344555 8999999999875433 467777655433332210 01112245566
Q ss_pred EcC---CCcEEEeec-CCeeEEEEc
Q psy18231 512 SHP---TRKHIMSAC-GNNVKLWTA 532 (540)
Q Consensus 512 ~s~---d~~~l~s~~-d~~i~iw~~ 532 (540)
|+| ++.+|..+= .|.+.-|++
T Consensus 406 F~pl~n~g~lLsiaWsTGriq~ypl 430 (445)
T KOG2139|consen 406 FGPLKNEGRLLSIAWSTGRIQRYPL 430 (445)
T ss_pred eeecccCCcEEEEEeccCceEeeee
Confidence 654 466666665 777766654
|
|
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=7e-14 Score=135.61 Aligned_cols=230 Identities=13% Similarity=0.085 Sum_probs=149.9
Q ss_pred ceeeeecccccc--eeeeeecCeEEEEeCCCCCEEEEee---CCCcEEEEcCCCCeeEEEeecCCcceeEEEEeeCCCeE
Q psy18231 147 WSIRVYRPLTVN--RELFVLSGLMHTRFPVDGSYCLTCG---SDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQI 221 (540)
Q Consensus 147 ~~i~~~~~~~~~--~~~~h~~~v~~v~~spdg~~lat~~---~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l 221 (540)
..|.+++....+ ....+...+.+.+|||||+.|+..+ .+..|.+|++.+++... +....+.+...+|+|||+.|
T Consensus 179 ~~l~~~d~dg~~~~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~-l~~~~~~~~~~~~SPDG~~L 257 (429)
T PRK03629 179 YELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ-VASFPRHNGAPAFSPDGSKL 257 (429)
T ss_pred eeEEEEcCCCCCCEEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ccCCCCCcCCeEECCCCCEE
Confidence 357777765543 2334556799999999999998654 24579999998875433 22233445578999999988
Q ss_pred EEe-eCCC--eEEEEEcCCCceeEeccccCCceeEEEECCCCCEEEEecCC-CcEEEE--EecCCCCCCcchhhhhHhhh
Q psy18231 222 ASG-ASDK--SVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQD-NTVMMW--DVKSRSHHPIQVRCLNEALK 295 (540)
Q Consensus 222 ~s~-s~dg--~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d-g~i~iw--d~~~~~~~~~~~~~~~~~~~ 295 (540)
+.. +.+| .|.+||+.+++... +..+...+....|+|||+.|+..+.+ +...+| |+.+++..
T Consensus 258 a~~~~~~g~~~I~~~d~~tg~~~~-lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~------------ 324 (429)
T PRK03629 258 AFALSKTGSLNLYVMDLASGQIRQ-VTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQ------------ 324 (429)
T ss_pred EEEEcCCCCcEEEEEECCCCCEEE-ccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeE------------
Confidence 865 4444 58899998887654 33445567889999999988776653 455555 44333210
Q ss_pred hcCCceeEEEEeecccccccccCceeeEEEeeeecccccceeeeeeccceeEEEeecccceecccccccccccchhhhhh
Q psy18231 296 EARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALK 375 (540)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (540)
.+.
T Consensus 325 -----------------------------------------------------------------------------~lt 327 (429)
T PRK03629 325 -----------------------------------------------------------------------------RIT 327 (429)
T ss_pred -----------------------------------------------------------------------------Eee
Confidence 000
Q ss_pred cccccEEEEEecC--CeeEeeeCC---CeEEEEeCCCCceEEeeeCCceEEEEEecCCcEEEeecCCCe---EEEEeccc
Q psy18231 376 EARDSITSVHVSD--HEILTASLD---CRIRRYDIRTGNLVTDYVGEPIVDACFTRDCQCILTCSTDEC---LRLFDKAT 447 (540)
Q Consensus 376 ~~~~~v~~l~~~~--~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~---i~i~d~~~ 447 (540)
.+........|+| +.++..+.+ ..|.+||+.+++..............|+|||++|+.++.++. +.++++ +
T Consensus 328 ~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~~Lt~~~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~-~ 406 (429)
T PRK03629 328 WEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLTDTFLDETPSIAPNGTMVIYSSSQGMGSVLNLVST-D 406 (429)
T ss_pred cCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeEEeCCCCCCCCceECCCCCEEEEEEcCCCceEEEEEEC-C
Confidence 1112233456776 555554432 358889998886443222233456789999999999887764 677776 4
Q ss_pred cchhhhhccCcCCcceEEEEecC
Q psy18231 448 GELLEEYKGHKSGDFRIECCLDS 470 (540)
Q Consensus 448 ~~~~~~~~~~~~~v~~~~~~~s~ 470 (540)
+.....+.+|.+.+... +|+|
T Consensus 407 G~~~~~l~~~~~~~~~p--~Wsp 427 (429)
T PRK03629 407 GRFKARLPATDGQVKFP--AWSP 427 (429)
T ss_pred CCCeEECccCCCCcCCc--ccCC
Confidence 66666677777766666 6766
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=5.5e-14 Score=137.05 Aligned_cols=231 Identities=16% Similarity=0.124 Sum_probs=154.1
Q ss_pred CcEEEEcCCCCeeEEEeecCCcceeEEEEeeCCCeEEEeeCC---CeEEEEEcCCCceeEeccccCCceeEEEECCCCCE
Q psy18231 186 KKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASD---KSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSV 262 (540)
Q Consensus 186 g~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~d---g~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 262 (540)
..|.+||.. +...+.+..+...+.+.+|+|||+.|+..+.+ ..|.+||+.+++... +..+.+......|+|||+.
T Consensus 184 ~~l~i~D~~-g~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~-l~~~~g~~~~~~~SpDG~~ 261 (433)
T PRK04922 184 YALQVADSD-GYNPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL-VASFRGINGAPSFSPDGRR 261 (433)
T ss_pred EEEEEECCC-CCCceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE-eccCCCCccCceECCCCCE
Confidence 468999975 44445566678889999999999999987743 479999998876543 3334455567899999987
Q ss_pred EE-EecCCC--cEEEEEecCCCCCCcchhhhhHhhhhcCCceeEEEEeecccccccccCceeeEEEeeeecccccceeee
Q psy18231 263 VI-SGSQDN--TVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGV 339 (540)
Q Consensus 263 l~-s~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (540)
|+ +.+.+| .|.+||+.+++..
T Consensus 262 l~~~~s~~g~~~Iy~~d~~~g~~~-------------------------------------------------------- 285 (433)
T PRK04922 262 LALTLSRDGNPEIYVMDLGSRQLT-------------------------------------------------------- 285 (433)
T ss_pred EEEEEeCCCCceEEEEECCCCCeE--------------------------------------------------------
Confidence 75 445555 5888888766521
Q ss_pred eeccceeEEEeecccceecccccccccccchhhhhhcccccEEEEEecC--CeeEeee-CCCe--EEEEeCCCCceEEe-
Q psy18231 340 LMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEARDSITSVHVSD--HEILTAS-LDCR--IRRYDIRTGNLVTD- 413 (540)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~--~~l~~~~-~dg~--i~iwd~~~~~~~~~- 413 (540)
.+..+.......+|+| +.++..+ .+|. |.++|+.+++....
T Consensus 286 ---------------------------------~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt 332 (433)
T PRK04922 286 ---------------------------------RLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERLT 332 (433)
T ss_pred ---------------------------------ECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEEee
Confidence 1112222334567777 5565554 3444 67777777654332
Q ss_pred eeCCceEEEEEecCCcEEEeecCCC---eEEEEeccccchhhhhccCcCCcceEEEEecCCCCeEEEeeCC---CcEEEE
Q psy18231 414 YVGEPIVDACFTRDCQCILTCSTDE---CLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSD---GKIYKW 487 (540)
Q Consensus 414 ~~~~~i~~~~~sp~~~~l~~~~~dg---~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~s~~~~~l~s~s~d---g~i~iw 487 (540)
..+......+|||||++++..+.++ .|.+||+.+++.. .+. +....... .|+|||++|+..+.+ +.|+++
T Consensus 333 ~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt-~~~~~~~p--~~spdG~~i~~~s~~~g~~~L~~~ 408 (433)
T PRK04922 333 FQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLT-PGSLDESP--SFAPNGSMVLYATREGGRGVLAAV 408 (433)
T ss_pred cCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeE-ECC-CCCCCCCc--eECCCCCEEEEEEecCCceEEEEE
Confidence 2344555789999999998765433 6999999877654 332 22122333 799999998776653 357788
Q ss_pred EecCCcceeEEEecccceeeeEEEEcC
Q psy18231 488 QLVDSSQISTLIHSVGKAVVNSLCSHP 514 (540)
Q Consensus 488 d~~~~~~~~~~~~~~~~~~v~~l~~s~ 514 (540)
++ ++.....+. .+.+.+...+|+|
T Consensus 409 ~~-~g~~~~~l~--~~~g~~~~p~wsp 432 (433)
T PRK04922 409 ST-DGRVRQRLV--SADGEVREPAWSP 432 (433)
T ss_pred EC-CCCceEEcc--cCCCCCCCCccCC
Confidence 86 455566665 4566778888887
|
|
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=1e-13 Score=134.71 Aligned_cols=234 Identities=14% Similarity=0.106 Sum_probs=151.9
Q ss_pred CcEEEEcCCCCeeEEEeecCCcceeEEEEeeCCCeEEEeeCC---CeEEEEEcCCCceeEeccccCCceeEEEECCCCCE
Q psy18231 186 KKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASD---KSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSV 262 (540)
Q Consensus 186 g~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~d---g~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 262 (540)
..|.++|. .+.....+..+...+.+.+|+|||+.|+..+.+ ..|.+||+.+++... +....+.+....|+|||+.
T Consensus 176 ~~L~~~D~-dG~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~-l~~~~g~~~~~~~SPDG~~ 253 (427)
T PRK02889 176 YQLQISDA-DGQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV-VANFKGSNSAPAWSPDGRT 253 (427)
T ss_pred cEEEEECC-CCCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCE
Confidence 46778886 454455566678889999999999999877643 469999998887543 3334456678999999988
Q ss_pred EE-EecCCCcEEEEEecCCCCCCcchhhhhHhhhhcCCceeEEEEeecccccccccCceeeEEEeeeecccccceeeeee
Q psy18231 263 VI-SGSQDNTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLM 341 (540)
Q Consensus 263 l~-s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (540)
|+ +.+.+|...+|.+........
T Consensus 254 la~~~~~~g~~~Iy~~d~~~~~~~-------------------------------------------------------- 277 (427)
T PRK02889 254 LAVALSRDGNSQIYTVNADGSGLR-------------------------------------------------------- 277 (427)
T ss_pred EEEEEccCCCceEEEEECCCCCcE--------------------------------------------------------
Confidence 76 567788877776643210000
Q ss_pred ccceeEEEeecccceecccccccccccchhhhhhcccccEEEEEecC--CeeEeee-CCCeEEEEe--CCCCceEE-eee
Q psy18231 342 STQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEARDSITSVHVSD--HEILTAS-LDCRIRRYD--IRTGNLVT-DYV 415 (540)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~--~~l~~~~-~dg~i~iwd--~~~~~~~~-~~~ 415 (540)
.+..+........|+| +.++..+ .+|...+|. +.+++... .+.
T Consensus 278 -------------------------------~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~ 326 (427)
T PRK02889 278 -------------------------------RLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVTFT 326 (427)
T ss_pred -------------------------------ECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEecC
Confidence 1112223334567877 5555444 345555654 44444322 223
Q ss_pred CCceEEEEEecCCcEEEeecCCC---eEEEEeccccchhhhhccCcCCcceEEEEecCCCCeEEEeeCCC---cEEEEEe
Q psy18231 416 GEPIVDACFTRDCQCILTCSTDE---CLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDG---KIYKWQL 489 (540)
Q Consensus 416 ~~~i~~~~~sp~~~~l~~~~~dg---~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~s~~~~~l~s~s~dg---~i~iwd~ 489 (540)
+.......|||||++++..+.++ .|.+||+.+++... +... ...... .|+|||++|+..+.++ .+++.++
T Consensus 327 g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~-lt~~-~~~~~p--~~spdg~~l~~~~~~~g~~~l~~~~~ 402 (427)
T PRK02889 327 GSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTA-LTDT-TRDESP--SFAPNGRYILYATQQGGRSVLAAVSS 402 (427)
T ss_pred CCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEE-ccCC-CCccCc--eECCCCCEEEEEEecCCCEEEEEEEC
Confidence 34455688999999998776554 69999998876433 2222 122334 8999999988777554 3555555
Q ss_pred cCCcceeEEEecccceeeeEEEEcCC
Q psy18231 490 VDSSQISTLIHSVGKAVVNSLCSHPT 515 (540)
Q Consensus 490 ~~~~~~~~~~~~~~~~~v~~l~~s~d 515 (540)
+++....+. .+.+.+...+|+|-
T Consensus 403 -~g~~~~~l~--~~~g~~~~p~wsp~ 425 (427)
T PRK02889 403 -DGRIKQRLS--VQGGDVREPSWGPF 425 (427)
T ss_pred -CCCceEEee--cCCCCCCCCccCCC
Confidence 566666665 56677888899874
|
|
| >KOG4497|consensus | Back alignment and domain information |
|---|
Probab=99.62 E-value=2.1e-13 Score=116.99 Aligned_cols=302 Identities=14% Similarity=0.112 Sum_probs=193.3
Q ss_pred eecCeEEEEeCCCCCEEE-EeeCCCcEEEEcCCCCeeEEEeecCCcceeEEEEeeCCCeE-EEeeCCCeEEEEEcCCCce
Q psy18231 163 VLSGLMHTRFPVDGSYCL-TCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQI-ASGASDKSVILWEVTTGQP 240 (540)
Q Consensus 163 h~~~v~~v~~spdg~~la-t~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l-~s~s~dg~i~iwd~~~~~~ 240 (540)
..+.|..+.|..|.-+++ ....|+.|.+|++...+-...+.....++.+++|||||+.+ .+...|-.|.+|.+.+.+.
T Consensus 47 cldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~ 126 (447)
T KOG4497|consen 47 CLDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKG 126 (447)
T ss_pred HHHHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEecccee
Confidence 457788899999888766 45678899999999998888888888999999999999654 5566788999999988765
Q ss_pred eEeccccCCceeEEEECCCCCEEEEecCCCcEEEEEecCCCCCCcchhhhhHhhhhcCCceeEEEEeecccccccccCce
Q psy18231 241 VRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHLSNGLL 320 (540)
Q Consensus 241 ~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (540)
.. ++.....+..++|+|||++.+..++-...-..++..-+ .-..+..........
T Consensus 127 ~~-~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~--------~W~ll~~f~~dT~Dl---------------- 181 (447)
T KOG4497|consen 127 YL-LPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCK--------AWILLKEFKLDTIDL---------------- 181 (447)
T ss_pred EE-ecccccCceeEEECCCCceeeeeecccHHHHHHHHhhH--------HHHHHHhcCCCcccc----------------
Confidence 43 34445567899999999998888753111111111000 000001111111111
Q ss_pred eeEEEeeeecccccceeeeeecc-ceeEEEeecccceecccccccccccchhhhhh-cccccEEEEEecC--CeeEeeeC
Q psy18231 321 TKLVFAFRCKYLNGLLSGVLMST-QHLMVLLDFLGSTQIGDVTPISIHNSCFQALK-EARDSITSVHVSD--HEILTASL 396 (540)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~l~~~~--~~l~~~~~ 396 (540)
.++-.+. +..+.+|+..-.-. .+. ...-.+..++|+| +++++|+.
T Consensus 182 ----------------tgieWsPdg~~laVwd~~Leyk---------------v~aYe~~lG~k~v~wsP~~qflavGsy 230 (447)
T KOG4497|consen 182 ----------------TGIEWSPDGNWLAVWDNVLEYK---------------VYAYERGLGLKFVEWSPCNQFLAVGSY 230 (447)
T ss_pred ----------------cCceECCCCcEEEEecchhhhe---------------eeeeeeccceeEEEeccccceEEeecc
Confidence 1111221 22233333211100 011 1124567778888 77888888
Q ss_pred CCeEEEEeCCCCce------------------------------------------------------------EEeeeC
Q psy18231 397 DCRIRRYDIRTGNL------------------------------------------------------------VTDYVG 416 (540)
Q Consensus 397 dg~i~iwd~~~~~~------------------------------------------------------------~~~~~~ 416 (540)
|+.+|+.+--+-+. +..+..
T Consensus 231 D~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp 310 (447)
T KOG4497|consen 231 DQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKP 310 (447)
T ss_pred chhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccC
Confidence 88877753221100 011110
Q ss_pred --------CceEEEEEecCCcEEEeecCC--CeEEEEeccccchhhhhccCcCCcceEEEEecCCCCeEEEeeCCCcEEE
Q psy18231 417 --------EPIVDACFTRDCQCILTCSTD--ECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYK 486 (540)
Q Consensus 417 --------~~i~~~~~sp~~~~l~~~~~d--g~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~s~~~~~l~s~s~dg~i~i 486 (540)
-.+.-++|++|..++++-... +.+.+||++..+.-..+. ...+|... .|+|....|+.+.....+++
T Consensus 311 ~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLi-Qk~piraf--~WdP~~prL~vctg~srLY~ 387 (447)
T KOG4497|consen 311 PTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVLI-QKHPIRAF--EWDPGRPRLVVCTGKSRLYF 387 (447)
T ss_pred CCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechhhhhhhhhh-hccceeEE--EeCCCCceEEEEcCCceEEE
Confidence 146778999999999986653 679999998877655554 33445444 79999888888887788999
Q ss_pred EEecCCcceeEEEecccceeeeEEEEcCCCcEEEeec-CCe
Q psy18231 487 WQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC-GNN 526 (540)
Q Consensus 487 wd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~-d~~ 526 (540)
|...-...+..- ...-.|..+.|.-+|..++..+ |.-
T Consensus 388 W~psg~~~V~vP---~~GF~i~~l~W~~~g~~i~l~~kDaf 425 (447)
T KOG4497|consen 388 WAPSGPRVVGVP---KKGFNIQKLQWLQPGEFIVLCGKDAF 425 (447)
T ss_pred EcCCCceEEecC---CCCceeeeEEecCCCcEEEEEcCCce
Confidence 986543333332 3446799999999999999998 753
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=2.2e-13 Score=133.08 Aligned_cols=230 Identities=13% Similarity=0.066 Sum_probs=151.2
Q ss_pred CcEEEEcCCCCeeEEEeecCCcceeEEEEeeCCCeEEEeeC---CCeEEEEEcCCCceeEeccccCCceeEEEECCCCCE
Q psy18231 186 KKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGAS---DKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSV 262 (540)
Q Consensus 186 g~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~---dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 262 (540)
..|.+||.. +...+.+..|...+.+.+|+|||+.|+..+. +..|.+||+.+++.. .+..+.+.+....|+|||+.
T Consensus 182 ~~l~~~d~d-g~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-~l~~~~g~~~~~~~SPDG~~ 259 (435)
T PRK05137 182 KRLAIMDQD-GANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-LVGNFPGMTFAPRFSPDGRK 259 (435)
T ss_pred eEEEEECCC-CCCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE-EeecCCCcccCcEECCCCCE
Confidence 478899974 4455667778889999999999999888764 468999999888653 34456667888999999987
Q ss_pred EE-EecCCCc--EEEEEecCCCCCCcchhhhhHhhhhcCCceeEEEEeecccccccccCceeeEEEeeeecccccceeee
Q psy18231 263 VI-SGSQDNT--VMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGV 339 (540)
Q Consensus 263 l~-s~~~dg~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (540)
|+ +.+.+|. |.+||+.++...
T Consensus 260 la~~~~~~g~~~Iy~~d~~~~~~~-------------------------------------------------------- 283 (435)
T PRK05137 260 VVMSLSQGGNTDIYTMDLRSGTTT-------------------------------------------------------- 283 (435)
T ss_pred EEEEEecCCCceEEEEECCCCceE--------------------------------------------------------
Confidence 75 5555665 666677665421
Q ss_pred eeccceeEEEeecccceecccccccccccchhhhhhcccccEEEEEecC--CeeEeee-CCC--eEEEEeCCCCceEEee
Q psy18231 340 LMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEARDSITSVHVSD--HEILTAS-LDC--RIRRYDIRTGNLVTDY 414 (540)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~--~~l~~~~-~dg--~i~iwd~~~~~~~~~~ 414 (540)
.+..+........|+| +.++..+ .+| .|.++|+.+++.....
T Consensus 284 ---------------------------------~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~lt 330 (435)
T PRK05137 284 ---------------------------------RLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRRIS 330 (435)
T ss_pred ---------------------------------EccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEEee
Confidence 1112223334567777 5555554 333 6888898776544332
Q ss_pred e-CCceEEEEEecCCcEEEeecCC---CeEEEEeccccchhhhhccCcCCcceEEEEecCCCCeEEEeeCC------CcE
Q psy18231 415 V-GEPIVDACFTRDCQCILTCSTD---ECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSD------GKI 484 (540)
Q Consensus 415 ~-~~~i~~~~~sp~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~s~~~~~l~s~s~d------g~i 484 (540)
. ...+....|+|||+.|+....+ ..|.+||+..+.. ..+.. ...+... .|+|||++|+..+.+ ..+
T Consensus 331 ~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~-~~lt~-~~~~~~p--~~spDG~~i~~~~~~~~~~~~~~L 406 (435)
T PRK05137 331 FGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGE-RILTS-GFLVEGP--TWAPNGRVIMFFRQTPGSGGAPKL 406 (435)
T ss_pred cCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCce-EeccC-CCCCCCC--eECCCCCEEEEEEccCCCCCcceE
Confidence 2 3456678899999999876543 3688889755432 22321 1223444 799999998765543 257
Q ss_pred EEEEecCCcceeEEEecccceeeeEEEEcC
Q psy18231 485 YKWQLVDSSQISTLIHSVGKAVVNSLCSHP 514 (540)
Q Consensus 485 ~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~ 514 (540)
+++|+..+.. ..+. ..+.+...+|+|
T Consensus 407 ~~~dl~g~~~-~~l~---~~~~~~~p~Wsp 432 (435)
T PRK05137 407 YTVDLTGRNE-REVP---TPGDASDPAWSP 432 (435)
T ss_pred EEEECCCCce-EEcc---CCCCccCcccCC
Confidence 7888755443 4443 233467778876
|
|
| >KOG3881|consensus | Back alignment and domain information |
|---|
Probab=99.61 E-value=6.3e-14 Score=123.09 Aligned_cols=265 Identities=16% Similarity=0.186 Sum_probs=185.3
Q ss_pred ecCeEEEEeCCCCC--EEEEeeCCCcEEEEcCCCCeeEEE------eecCCcceeEEEEeeCCCeEEEeeCCCeEEEEEc
Q psy18231 164 LSGLMHTRFPVDGS--YCLTCGSDKKIKLWNPYRNLLLKT------YGGHAHEVNDATAACDSSQIASGASDKSVILWEV 235 (540)
Q Consensus 164 ~~~v~~v~~spdg~--~lat~~~dg~i~iwd~~~~~~~~~------~~~h~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~ 235 (540)
...|+.++|.-|++ .|...+.+..+............. ....++.|..++.. | ..|++|-.+|.+.+|..
T Consensus 55 ~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~-d-g~Litc~~sG~l~~~~~ 132 (412)
T KOG3881|consen 55 LDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLA-D-GTLITCVSSGNLQVRHD 132 (412)
T ss_pred hhhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhc-C-CEEEEEecCCcEEEEec
Confidence 35677777776554 344444566777776665544333 23456677777765 3 46888888999999999
Q ss_pred CCCc----eeEeccccCCceeEEEECCC-CCEEEEecCC--CcEEEEEecCCCCCCcchhhhhHhhhhcCCceeEEEEee
Q psy18231 236 TTGQ----PVRRWREHASKVTCVKFNED-SSVVISGSQD--NTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLV 308 (540)
Q Consensus 236 ~~~~----~~~~~~~h~~~v~~~~~~~~-~~~l~s~~~d--g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (540)
+.+. .+..+..+ ..+..+.-++. ...+++||.. ..+++||++..+. +.
T Consensus 133 k~~d~hss~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~q--iw---------------------- 187 (412)
T KOG3881|consen 133 KSGDLHSSKLIKLATG-PGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQ--IW---------------------- 187 (412)
T ss_pred cCCccccccceeeecC-CceeeeccCCCCCceEecCchhcccceeeeeccccee--ee----------------------
Confidence 8543 22233322 45666666663 4566679988 8899999987641 11
Q ss_pred cccccccccCceeeEEEeeeecccccceeeeeeccceeEEEeecccceecccccccccccchhhhhhcccccEEEEEecC
Q psy18231 309 KSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEARDSITSVHVSD 388 (540)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~ 388 (540)
..+.... ... . -.-.-.++++.|-+
T Consensus 188 -------------------~aKNvpn--------------------------------D~L---~-LrVPvW~tdi~Fl~ 212 (412)
T KOG3881|consen 188 -------------------SAKNVPN--------------------------------DRL---G-LRVPVWITDIRFLE 212 (412)
T ss_pred -------------------eccCCCC--------------------------------ccc---c-ceeeeeeccceecC
Confidence 0000000 000 0 00122345555543
Q ss_pred ----CeeEeeeCCCeEEEEeCCCCc-eEEeee--CCceEEEEEecCCcEEEeecCCCeEEEEeccccchhhh-hccCcCC
Q psy18231 389 ----HEILTASLDCRIRRYDIRTGN-LVTDYV--GEPIVDACFTRDCQCILTCSTDECLRLFDKATGELLEE-YKGHKSG 460 (540)
Q Consensus 389 ----~~l~~~~~dg~i~iwd~~~~~-~~~~~~--~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~-~~~~~~~ 460 (540)
..|++++.-+.+++||.+.++ ++..+. .++++++...|+++++++|..-+.+..||++.++.+.. +++-.+.
T Consensus 213 g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGs 292 (412)
T KOG3881|consen 213 GSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGS 292 (412)
T ss_pred CCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecccchhheecccCceeeccccCCccCC
Confidence 679999999999999999764 455544 48999999999999999999999999999999988766 8999999
Q ss_pred cceEEEEecCCCCeEEEeeCCCcEEEEEecCCcceeEEEecccceeeeEEEEcCC
Q psy18231 461 DFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPT 515 (540)
Q Consensus 461 v~~~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d 515 (540)
+..+ ..+|.+++|++++-|..|||+|+++.+++.... -....+++.+.++
T Consensus 293 irsi--h~hp~~~~las~GLDRyvRIhD~ktrkll~kvY---vKs~lt~il~~~~ 342 (412)
T KOG3881|consen 293 IRSI--HCHPTHPVLASCGLDRYVRIHDIKTRKLLHKVY---VKSRLTFILLRDD 342 (412)
T ss_pred cceE--EEcCCCceEEeeccceeEEEeecccchhhhhhh---hhccccEEEecCC
Confidence 9988 778999999999999999999999977776664 3445677777654
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.5e-13 Score=134.03 Aligned_cols=230 Identities=13% Similarity=0.084 Sum_probs=148.7
Q ss_pred ceeeeecccccc--eeeeeecCeEEEEeCCCCCEEEEeeC---CCcEEEEcCCCCeeEEEeecCCcceeEEEEeeCCCeE
Q psy18231 147 WSIRVYRPLTVN--RELFVLSGLMHTRFPVDGSYCLTCGS---DKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQI 221 (540)
Q Consensus 147 ~~i~~~~~~~~~--~~~~h~~~v~~v~~spdg~~lat~~~---dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l 221 (540)
..|.+|+..... ....|...+.+.+|+|||+.|+..+. +..|.+||+.+++... +..+.+...+.+|+|||+.|
T Consensus 184 ~~l~i~D~~g~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~-l~~~~g~~~~~~~SpDG~~l 262 (433)
T PRK04922 184 YALQVADSDGYNPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL-VASFRGINGAPSFSPDGRRL 262 (433)
T ss_pred EEEEEECCCCCCceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE-eccCCCCccCceECCCCCEE
Confidence 457777765432 33446678999999999999997764 3469999998876533 33345556688999999987
Q ss_pred E-EeeCCC--eEEEEEcCCCceeEeccccCCceeEEEECCCCCEEEEecC-CCc--EEEEEecCCCCCCcchhhhhHhhh
Q psy18231 222 A-SGASDK--SVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQ-DNT--VMMWDVKSRSHHPIQVRCLNEALK 295 (540)
Q Consensus 222 ~-s~s~dg--~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~-dg~--i~iwd~~~~~~~~~~~~~~~~~~~ 295 (540)
+ +.+.+| .|.+||+.+++.. .+..+.......+|+|||+.|+..+. +|. |.++|+.+++...
T Consensus 263 ~~~~s~~g~~~Iy~~d~~~g~~~-~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~----------- 330 (433)
T PRK04922 263 ALTLSRDGNPEIYVMDLGSRQLT-RLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAER----------- 330 (433)
T ss_pred EEEEeCCCCceEEEEECCCCCeE-ECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEE-----------
Confidence 5 445555 6999999887654 45556556678899999998887653 455 4445554433100
Q ss_pred hcCCceeEEEEeecccccccccCceeeEEEeeeecccccceeeeeeccceeEEEeecccceecccccccccccchhhhhh
Q psy18231 296 EARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALK 375 (540)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (540)
+.
T Consensus 331 ------------------------------------------------------------------------------lt 332 (433)
T PRK04922 331 ------------------------------------------------------------------------------LT 332 (433)
T ss_pred ------------------------------------------------------------------------------ee
Confidence 00
Q ss_pred cccccEEEEEecC--CeeEeeeCCC---eEEEEeCCCCceEEeeeCCceEEEEEecCCcEEEeecCC---CeEEEEeccc
Q psy18231 376 EARDSITSVHVSD--HEILTASLDC---RIRRYDIRTGNLVTDYVGEPIVDACFTRDCQCILTCSTD---ECLRLFDKAT 447 (540)
Q Consensus 376 ~~~~~v~~l~~~~--~~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d---g~i~i~d~~~ 447 (540)
.+.......+|+| +.++..+.++ .|.+||+.+++......+.......|+|||++++..+.+ +.|.++|..
T Consensus 333 ~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~~Lt~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~- 411 (433)
T PRK04922 333 FQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVRTLTPGSLDESPSFAPNGSMVLYATREGGRGVLAAVSTD- 411 (433)
T ss_pred cCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeEECCCCCCCCCceECCCCCEEEEEEecCCceEEEEEECC-
Confidence 0111223467776 5665544332 699999988876533333345567999999988876653 467888874
Q ss_pred cchhhhhccCcCCcceEEEEecC
Q psy18231 448 GELLEEYKGHKSGDFRIECCLDS 470 (540)
Q Consensus 448 ~~~~~~~~~~~~~v~~~~~~~s~ 470 (540)
+.....+..+.+.+... +|+|
T Consensus 412 g~~~~~l~~~~g~~~~p--~wsp 432 (433)
T PRK04922 412 GRVRQRLVSADGEVREP--AWSP 432 (433)
T ss_pred CCceEEcccCCCCCCCC--ccCC
Confidence 44445554444545544 5654
|
|
| >KOG3881|consensus | Back alignment and domain information |
|---|
Probab=99.60 E-value=7.6e-14 Score=122.57 Aligned_cols=239 Identities=13% Similarity=0.169 Sum_probs=177.0
Q ss_pred CCcceeEEEEeeCCC--eEEEeeCCCeEEEEEcCCCceeEec------cccCCceeEEEECCCCCEEEEecCCCcEEEEE
Q psy18231 205 HAHEVNDATAACDSS--QIASGASDKSVILWEVTTGQPVRRW------REHASKVTCVKFNEDSSVVISGSQDNTVMMWD 276 (540)
Q Consensus 205 h~~~v~~l~~sp~~~--~l~s~s~dg~i~iwd~~~~~~~~~~------~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd 276 (540)
....|.+++|.-+++ .|...+.|..+..+.+........+ .....+|..++.. |+ .|+++-.+|.+.+|.
T Consensus 54 ~~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~-dg-~Litc~~sG~l~~~~ 131 (412)
T KOG3881|consen 54 ELDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLA-DG-TLITCVSSGNLQVRH 131 (412)
T ss_pred hhhhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhc-CC-EEEEEecCCcEEEEe
Confidence 355677788876544 3555556667777777665443332 2345566666654 33 677788899999999
Q ss_pred ecCCCCCCcchhhhhHhhhhcCCceeEEEEeecccccccccCceeeEEEeeeecccccceeeeeeccceeEEEeecccce
Q psy18231 277 VKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGST 356 (540)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (540)
...+..+...
T Consensus 132 ~k~~d~hss~---------------------------------------------------------------------- 141 (412)
T KOG3881|consen 132 DKSGDLHSSK---------------------------------------------------------------------- 141 (412)
T ss_pred ccCCcccccc----------------------------------------------------------------------
Confidence 8865421000
Q ss_pred ecccccccccccchhhhhhcccccEEEEEe---cCCeeEeeeCC--CeEEEEeCCCCceEEeeeC-----------CceE
Q psy18231 357 QIGDVTPISIHNSCFQALKEARDSITSVHV---SDHEILTASLD--CRIRRYDIRTGNLVTDYVG-----------EPIV 420 (540)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~---~~~~l~~~~~d--g~i~iwd~~~~~~~~~~~~-----------~~i~ 420 (540)
+..+.. ...+..+.- +|..+++|+.. ..+.+||++..+.+.+-.. -.++
T Consensus 142 --------------l~~la~-g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~t 206 (412)
T KOG3881|consen 142 --------------LIKLAT-GPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWIT 206 (412)
T ss_pred --------------ceeeec-CCceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeec
Confidence 000000 122222322 34778889988 8899999998876655543 2477
Q ss_pred EEEEecC--CcEEEeecCCCeEEEEecccc-chhhhhccCcCCcceEEEEecCCCCeEEEeeCCCcEEEEEecCCcceeE
Q psy18231 421 DACFTRD--CQCILTCSTDECLRLFDKATG-ELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQIST 497 (540)
Q Consensus 421 ~~~~sp~--~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~v~~~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~ 497 (540)
.+.|-+. ...|++++.-+.+++||.+.+ +++..|.-.+.+++++ ...|+++++++|..-|.+..+|++.++.+..
T Consensus 207 di~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~--~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~ 284 (412)
T KOG3881|consen 207 DIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISST--GLTPSGNFIYTGNTKGQLAKFDLRGGKLLGC 284 (412)
T ss_pred cceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceee--eecCCCcEEEEecccchhheecccCceeecc
Confidence 8889887 889999999999999999876 5778888788888888 7789999999999999999999999998877
Q ss_pred -EEecccceeeeEEEEcCCCcEEEeec-CCeeEEEEccc
Q psy18231 498 -LIHSVGKAVVNSLCSHPTRKHIMSAC-GNNVKLWTAEE 534 (540)
Q Consensus 498 -~~~~~~~~~v~~l~~s~d~~~l~s~~-d~~i~iw~~~~ 534 (540)
+. +-.+.|+++..+|.+++|++++ |..|||+|+++
T Consensus 285 ~~k--g~tGsirsih~hp~~~~las~GLDRyvRIhD~kt 321 (412)
T KOG3881|consen 285 GLK--GITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKT 321 (412)
T ss_pred ccC--CccCCcceEEEcCCCceEEeeccceeEEEeeccc
Confidence 66 7889999999999999999999 99999999987
|
|
| >KOG1354|consensus | Back alignment and domain information |
|---|
Probab=99.60 E-value=2.9e-13 Score=116.91 Aligned_cols=273 Identities=16% Similarity=0.219 Sum_probs=176.4
Q ss_pred CCcceeEEEEeeCCCeEEEeeCCCeEEEEEcCCCc-----eeEeccccC------------CceeEEEECCCC--CEEEE
Q psy18231 205 HAHEVNDATAACDSSQIASGASDKSVILWEVTTGQ-----PVRRWREHA------------SKVTCVKFNEDS--SVVIS 265 (540)
Q Consensus 205 h~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~-----~~~~~~~h~------------~~v~~~~~~~~~--~~l~s 265 (540)
....|.++.|..+|.+||+|..+|.|.++.-+... ....++.|. ..|..+.|.+++ ..++.
T Consensus 24 eadiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLl 103 (433)
T KOG1354|consen 24 EADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLL 103 (433)
T ss_pred hhcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEE
Confidence 35678899999999999999999999999754322 223344443 468899998865 45666
Q ss_pred ecCCCcEEEEEecCCCCCCcchhhhhHhhhhcCCceeEEEEeecccccccccCceeeEEEeeeecccccceeeeeeccce
Q psy18231 266 GSQDNTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQH 345 (540)
Q Consensus 266 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (540)
.+.|.+|++|.+......... ...........+... +.+. ....+.
T Consensus 104 stNdktiKlWKi~er~~k~~~---~~~~~~~~~~~~~~l-----------------------r~p~--------~~~~~~ 149 (433)
T KOG1354|consen 104 STNDKTIKLWKIRERGSKKEG---YNLPEEGPPGTITSL-----------------------RLPV--------EGRHDL 149 (433)
T ss_pred ecCCcceeeeeeecccccccc---ccccccCCCCcccee-----------------------ecee--------eccccc
Confidence 778999999999876532200 000000000000000 0000 000000
Q ss_pred eEEEeecccceecccccccccccchhh-hhhcccccEEEEEecC-CeeEeeeCCCeEEEEeCCCCceEEee---eC----
Q psy18231 346 LMVLLDFLGSTQIGDVTPISIHNSCFQ-ALKEARDSITSVHVSD-HEILTASLDCRIRRYDIRTGNLVTDY---VG---- 416 (540)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~l~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~---~~---- 416 (540)
.+ ...+.+ --..|.--|.+++++. ...+..+.|=.|.+|+++-......+ +.
T Consensus 150 ~v-------------------ea~prRv~aNaHtyhiNSIS~NsD~Et~lSADdLRINLWnlei~d~sFnIVDIKP~nmE 210 (433)
T KOG1354|consen 150 EV-------------------EASPRRVYANAHTYHINSISVNSDKETFLSADDLRINLWNLEIIDQSFNIVDIKPANME 210 (433)
T ss_pred ee-------------------eeeeeeeccccceeEeeeeeecCccceEeeccceeeeeccccccCCceeEEEccccCHH
Confidence 00 000111 2246888899999988 66666778889999999854433333 22
Q ss_pred ---CceEEEEEec-CCcEEEeecCCCeEEEEeccccchh----hhh------------ccCcCCcceEEEEecCCCCeEE
Q psy18231 417 ---EPIVDACFTR-DCQCILTCSTDECLRLFDKATGELL----EEY------------KGHKSGDFRIECCLDSKDSQIF 476 (540)
Q Consensus 417 ---~~i~~~~~sp-~~~~l~~~~~dg~i~i~d~~~~~~~----~~~------------~~~~~~v~~~~~~~s~~~~~l~ 476 (540)
.-|++..|+| ..+.++-++..|+|++.|++...+- ..+ ..--..|..+ .|+++|+|++
T Consensus 211 eLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDv--KFs~sGryil 288 (433)
T KOG1354|consen 211 ELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDV--KFSHSGRYIL 288 (433)
T ss_pred HHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCCcchhhHHHHhhhhhce--EEccCCcEEE
Confidence 3589999999 4577888888999999999854221 111 1122334555 8999999999
Q ss_pred EeeCCCcEEEEEe-cCCcceeEEEecccc------------ee---eeEEEEcCCCcEEEeec-CCeeEEEEcccc
Q psy18231 477 CGSSDGKIYKWQL-VDSSQISTLIHSVGK------------AV---VNSLCSHPTRKHIMSAC-GNNVKLWTAEED 535 (540)
Q Consensus 477 s~s~dg~i~iwd~-~~~~~~~~~~~~~~~------------~~---v~~l~~s~d~~~l~s~~-d~~i~iw~~~~~ 535 (540)
+-+. -+|++||+ ...+++.+.. .|. .. -.-++|+.++.+++||+ .+.++++++..|
T Consensus 289 sRDy-ltvk~wD~nme~~pv~t~~--vh~~lr~kLc~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~~g 361 (433)
T KOG1354|consen 289 SRDY-LTVKLWDLNMEAKPVETYP--VHEYLRSKLCSLYENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNLARG 361 (433)
T ss_pred Eecc-ceeEEEeccccCCcceEEe--ehHhHHHHHHHHhhccchhheeEEEEcCCcceEecccccceEEEecCCCC
Confidence 8865 58999999 5667777776 343 12 24578999999999999 999999996655
|
|
| >KOG2394|consensus | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.4e-14 Score=132.02 Aligned_cols=123 Identities=21% Similarity=0.239 Sum_probs=110.2
Q ss_pred eeeeecCeEEEEeCCCCCEEEEeeCCCcEEEEcCCCCeeEEEeecCCcceeEEEEeeCCCeEEEeeCCCeEEEEEcCCCc
Q psy18231 160 ELFVLSGLMHTRFPVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQ 239 (540)
Q Consensus 160 ~~~h~~~v~~v~~spdg~~lat~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~ 239 (540)
...-+++|+..+|||||++||+.+.||.+||+|..+.+++..++.--+...|++|||||++|++|++|-.|.||.+..++
T Consensus 286 w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erR 365 (636)
T KOG2394|consen 286 WHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERR 365 (636)
T ss_pred eEeccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEecCCcceEEEEEeccce
Confidence 33455789999999999999999999999999999999888888888999999999999999999999999999999999
Q ss_pred eeEeccccCCceeEEEECCC-----------------------------------C-------------CEEEEecCCCc
Q psy18231 240 PVRRWREHASKVTCVKFNED-----------------------------------S-------------SVVISGSQDNT 271 (540)
Q Consensus 240 ~~~~~~~h~~~v~~~~~~~~-----------------------------------~-------------~~l~s~~~dg~ 271 (540)
.+..-++|.+.|+.++|.|- + -.|.+.+.|-.
T Consensus 366 VVARGqGHkSWVs~VaFDpytt~~ee~~~~~~~~~~~~~~~~~~~~r~~~~~S~~~~~~s~~~~~~~v~YRfGSVGqDTq 445 (636)
T KOG2394|consen 366 VVARGQGHKSWVSVVAFDPYTTSTEEWNNFSGMDSTFSDVAHDFEIRANGTGSAEGCPLSSFNRINSVTYRFGSVGQDTQ 445 (636)
T ss_pred EEEeccccccceeeEeecccccccccccccccccccccchhcccccccCCCCCcCCCcccccccccceEEEeecccccce
Confidence 99999999999999999830 1 14678889999
Q ss_pred EEEEEecCCCC
Q psy18231 272 VMMWDVKSRSH 282 (540)
Q Consensus 272 i~iwd~~~~~~ 282 (540)
+.+||+.....
T Consensus 446 lcLWDlteD~L 456 (636)
T KOG2394|consen 446 LCLWDLTEDVL 456 (636)
T ss_pred EEEEecchhhc
Confidence 99999987654
|
|
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=2.7e-13 Score=131.70 Aligned_cols=232 Identities=11% Similarity=0.074 Sum_probs=148.1
Q ss_pred ceeeeecccccc--eeeeeecCeEEEEeCCCCCEEEEeeCC---CcEEEEcCCCCeeEEEeecCCcceeEEEEeeCCCeE
Q psy18231 147 WSIRVYRPLTVN--RELFVLSGLMHTRFPVDGSYCLTCGSD---KKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQI 221 (540)
Q Consensus 147 ~~i~~~~~~~~~--~~~~h~~~v~~v~~spdg~~lat~~~d---g~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l 221 (540)
..|.+++..... ....+.+.+.+.+|||||+.|+..+.+ ..|.+||+.+++... +....+.+.+.+|+|||+.|
T Consensus 176 ~~L~~~D~dG~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~-l~~~~g~~~~~~~SPDG~~l 254 (427)
T PRK02889 176 YQLQISDADGQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV-VANFKGSNSAPAWSPDGRTL 254 (427)
T ss_pred cEEEEECCCCCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCEE
Confidence 345566553322 234577889999999999999876642 469999998886543 33344566789999999988
Q ss_pred E-EeeCCCeEEEEEc--CCCceeEeccccCCceeEEEECCCCCEEEEecC-CCcEEEEEecCCCCCCcchhhhhHhhhhc
Q psy18231 222 A-SGASDKSVILWEV--TTGQPVRRWREHASKVTCVKFNEDSSVVISGSQ-DNTVMMWDVKSRSHHPIQVRCLNEALKEA 297 (540)
Q Consensus 222 ~-s~s~dg~i~iwd~--~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 297 (540)
+ +.+.+|...||.+ ..+. ...+..+........|+|||+.|+..+. +|...+|.+.........
T Consensus 255 a~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~----------- 322 (427)
T PRK02889 255 AVALSRDGNSQIYTVNADGSG-LRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQR----------- 322 (427)
T ss_pred EEEEccCCCceEEEEECCCCC-cEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEE-----------
Confidence 6 5677887777654 3343 4555556666677899999998876554 467777766432100000
Q ss_pred CCceeEEEEeecccccccccCceeeEEEeeeecccccceeeeeeccceeEEEeecccceecccccccccccchhhhhhcc
Q psy18231 298 RDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEA 377 (540)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 377 (540)
+..+
T Consensus 323 ----------------------------------------------------------------------------lt~~ 326 (427)
T PRK02889 323 ----------------------------------------------------------------------------VTFT 326 (427)
T ss_pred ----------------------------------------------------------------------------EecC
Confidence 0000
Q ss_pred cccEEEEEecC--CeeEeeeCCC---eEEEEeCCCCceEEeeeCCceEEEEEecCCcEEEeecCCC---eEEEEeccccc
Q psy18231 378 RDSITSVHVSD--HEILTASLDC---RIRRYDIRTGNLVTDYVGEPIVDACFTRDCQCILTCSTDE---CLRLFDKATGE 449 (540)
Q Consensus 378 ~~~v~~l~~~~--~~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg---~i~i~d~~~~~ 449 (540)
.......+|+| +.++..+.++ .|.+||+.+++......+.......|+|||+.|+..+.++ .+.+.+. ++.
T Consensus 327 g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~lt~~~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~-~g~ 405 (427)
T PRK02889 327 GSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTALTDTTRDESPSFAPNGRYILYATQQGGRSVLAAVSS-DGR 405 (427)
T ss_pred CCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEEccCCCCccCceECCCCCEEEEEEecCCCEEEEEEEC-CCC
Confidence 11122346776 6666655443 6999999988765433344456789999999988877544 3556666 455
Q ss_pred hhhhhccCcCCcceEEEEecC
Q psy18231 450 LLEEYKGHKSGDFRIECCLDS 470 (540)
Q Consensus 450 ~~~~~~~~~~~v~~~~~~~s~ 470 (540)
....+..+.+.+... +|+|
T Consensus 406 ~~~~l~~~~g~~~~p--~wsp 424 (427)
T PRK02889 406 IKQRLSVQGGDVREP--SWGP 424 (427)
T ss_pred ceEEeecCCCCCCCC--ccCC
Confidence 555555555555555 5665
|
|
| >KOG1334|consensus | Back alignment and domain information |
|---|
Probab=99.57 E-value=4.8e-14 Score=127.19 Aligned_cols=253 Identities=16% Similarity=0.250 Sum_probs=186.4
Q ss_pred CeeEEEeecCCcceeEEEEeeCCCeEEEeeCCCeEEEEEcCCCceeEec-cccCCceeEEEECC--CCCEEEEecCCCcE
Q psy18231 196 NLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPVRRW-REHASKVTCVKFNE--DSSVVISGSQDNTV 272 (540)
Q Consensus 196 ~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~-~~h~~~v~~~~~~~--~~~~l~s~~~dg~i 272 (540)
..+...|..|.+.|..+.|+..|..|++||.|..|.+||+..++....+ .+|...|....|-| +...+++.+.||.+
T Consensus 132 ~~l~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqv 211 (559)
T KOG1334|consen 132 LRLQKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQV 211 (559)
T ss_pred hhhhhcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCce
Confidence 3455678899999999999999999999999999999999998876655 47999999999988 44689999999999
Q ss_pred EEEEecCCCCCCcchhhhhHhhhhcCCceeEEEEeecccccccccCceeeEEEeeeecccccceeeeeeccceeEEEeec
Q psy18231 273 MMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDF 352 (540)
Q Consensus 273 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (540)
++=.+......
T Consensus 212 r~s~i~~t~~~--------------------------------------------------------------------- 222 (559)
T KOG1334|consen 212 RVSEILETGYV--------------------------------------------------------------------- 222 (559)
T ss_pred eeeeeccccce---------------------------------------------------------------------
Confidence 98665433210
Q ss_pred ccceecccccccccccchhhhhhcccccEEEEEecC---CeeEeeeCCCeEEEEeCCCCceEEeeeC-----C---ceEE
Q psy18231 353 LGSTQIGDVTPISIHNSCFQALKEARDSITSVHVSD---HEILTASLDCRIRRYDIRTGNLVTDYVG-----E---PIVD 421 (540)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~~-----~---~i~~ 421 (540)
.-...+..|.+.|.-++..| ..|.+++.|+.+.-+|++.+.+...+.. . ....
T Consensus 223 ----------------e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~ 286 (559)
T KOG1334|consen 223 ----------------ENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYT 286 (559)
T ss_pred ----------------ecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeee
Confidence 00114567888888888766 8899999999999999998765443321 2 4678
Q ss_pred EEEecCC-cEEEeecCCCeEEEEeccccc------hhhhhccC----cCCcceEEEEecCCCCeEEEeeCCCcEEEEEec
Q psy18231 422 ACFTRDC-QCILTCSTDECLRLFDKATGE------LLEEYKGH----KSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLV 490 (540)
Q Consensus 422 ~~~sp~~-~~l~~~~~dg~i~i~d~~~~~------~~~~~~~~----~~~v~~~~~~~s~~~~~l~s~s~dg~i~iwd~~ 490 (540)
++..|.. ..+++++.|..+++||.+.-. .+.++..| ..++....++|+.++.-|.+.-.|-.|+++.-.
T Consensus 287 Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~ 366 (559)
T KOG1334|consen 287 IAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKS 366 (559)
T ss_pred EecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccc
Confidence 8888854 489999999999999987532 23333332 233333334899777777777778889999532
Q ss_pred C--C----------cceeE-EEecccc--eeeeEEEE-cCCCcEEEeec-CCeeEEEEcccc
Q psy18231 491 D--S----------SQIST-LIHSVGK--AVVNSLCS-HPTRKHIMSAC-GNNVKLWTAEED 535 (540)
Q Consensus 491 ~--~----------~~~~~-~~~~~~~--~~v~~l~~-s~d~~~l~s~~-d~~i~iw~~~~~ 535 (540)
- | ..+.. ++ +|. ..|..+-| -|...|+++|+ -|.|.||+-.++
T Consensus 367 ~~~G~~p~~~s~~~~~~k~vYK--GHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~ 426 (559)
T KOG1334|consen 367 MGDGSEPDPSSPREQYVKRVYK--GHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTG 426 (559)
T ss_pred cccCCCCCCCcchhhccchhhc--ccccccccceeeeccCccceEEecCccceEEEEecchh
Confidence 2 2 11112 34 665 34777765 68889999999 799999997654
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=6e-13 Score=130.05 Aligned_cols=213 Identities=10% Similarity=0.020 Sum_probs=141.8
Q ss_pred ceeeeecccccc--eeeeeecCeEEEEeCCCCCEEEEeeC---CCcEEEEcCCCCeeEEEeecCCcceeEEEEeeCCCeE
Q psy18231 147 WSIRVYRPLTVN--RELFVLSGLMHTRFPVDGSYCLTCGS---DKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQI 221 (540)
Q Consensus 147 ~~i~~~~~~~~~--~~~~h~~~v~~v~~spdg~~lat~~~---dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l 221 (540)
..|.+++..... ....|.+.+.+.+|+|||+.|+..+. +..|.+||+.+++.. .+..+.+.+...+|+|||+.|
T Consensus 182 ~~l~~~d~dg~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-~l~~~~g~~~~~~~SPDG~~l 260 (435)
T PRK05137 182 KRLAIMDQDGANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-LVGNFPGMTFAPRFSPDGRKV 260 (435)
T ss_pred eEEEEECCCCCCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE-EeecCCCcccCcEECCCCCEE
Confidence 356666654433 33457788999999999999987653 468999999887653 455567778899999999987
Q ss_pred E-EeeCCCe--EEEEEcCCCceeEeccccCCceeEEEECCCCCEEEEecC-CC--cEEEEEecCCCCCCcchhhhhHhhh
Q psy18231 222 A-SGASDKS--VILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQ-DN--TVMMWDVKSRSHHPIQVRCLNEALK 295 (540)
Q Consensus 222 ~-s~s~dg~--i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~-dg--~i~iwd~~~~~~~~~~~~~~~~~~~ 295 (540)
+ +.+.++. |.+||+.+++. ..+..+........|+|||+.|+..+. +| .|.+||+.+++...
T Consensus 261 a~~~~~~g~~~Iy~~d~~~~~~-~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~----------- 328 (435)
T PRK05137 261 VMSLSQGGNTDIYTMDLRSGTT-TRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRR----------- 328 (435)
T ss_pred EEEEecCCCceEEEEECCCCce-EEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEE-----------
Confidence 5 5555554 77778877765 445556666778999999998887663 33 56677765543110
Q ss_pred hcCCceeEEEEeecccccccccCceeeEEEeeeecccccceeeeeeccceeEEEeecccceecccccccccccchhhhhh
Q psy18231 296 EARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALK 375 (540)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (540)
+.
T Consensus 329 ------------------------------------------------------------------------------lt 330 (435)
T PRK05137 329 ------------------------------------------------------------------------------IS 330 (435)
T ss_pred ------------------------------------------------------------------------------ee
Confidence 01
Q ss_pred cccccEEEEEecC--CeeEeeeCC---CeEEEEeCCCCceEEeeeCCceEEEEEecCCcEEEeecCC------CeEEEEe
Q psy18231 376 EARDSITSVHVSD--HEILTASLD---CRIRRYDIRTGNLVTDYVGEPIVDACFTRDCQCILTCSTD------ECLRLFD 444 (540)
Q Consensus 376 ~~~~~v~~l~~~~--~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d------g~i~i~d 444 (540)
.+...+....|+| +.++..+.+ ..|.+||+.++.......+..+....|+|||+.|+..+.+ ..++++|
T Consensus 331 ~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~~~lt~~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~d 410 (435)
T PRK05137 331 FGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGERILTSGFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVD 410 (435)
T ss_pred cCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCceEeccCCCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEE
Confidence 1122334456777 556554432 3688889865543222223456788999999988775542 3578888
Q ss_pred ccccch
Q psy18231 445 KATGEL 450 (540)
Q Consensus 445 ~~~~~~ 450 (540)
+..+..
T Consensus 411 l~g~~~ 416 (435)
T PRK05137 411 LTGRNE 416 (435)
T ss_pred CCCCce
Confidence 765543
|
|
| >KOG0974|consensus | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.8e-12 Score=127.83 Aligned_cols=141 Identities=21% Similarity=0.316 Sum_probs=121.6
Q ss_pred hhhhcccccceeeeecccccc---eeeeeecCeEEEEeCCCCCEEEEeeCCCcEEEEcCCCCeeEE-EeecCCcceeEEE
Q psy18231 138 RILYELPKEWSIRVYRPLTVN---RELFVLSGLMHTRFPVDGSYCLTCGSDKKIKLWNPYRNLLLK-TYGGHAHEVNDAT 213 (540)
Q Consensus 138 ~~~~~~~~~~~i~~~~~~~~~---~~~~h~~~v~~v~~spdg~~lat~~~dg~i~iwd~~~~~~~~-~~~~h~~~v~~l~ 213 (540)
..+++++.-+.|.+|++...+ +..+|.+.|.++.|+-||+++++.|.|.++++|++++.+... ..-+|+..|+.+.
T Consensus 146 ~~i~~gsv~~~iivW~~~~dn~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~ 225 (967)
T KOG0974|consen 146 LYIASGSVFGEIIVWKPHEDNKPIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACC 225 (967)
T ss_pred EEEEeccccccEEEEeccccCCcceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEE
Confidence 334566777789999987544 467899999999999999999999999999999999988776 6678999999999
Q ss_pred EeeCCCeEEEeeCCCeEEEEEcCCCceeEeccccC-CceeEEEECCCCCEEEEecCCCcEEEEEecCCC
Q psy18231 214 AACDSSQIASGASDKSVILWEVTTGQPVRRWREHA-SKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRS 281 (540)
Q Consensus 214 ~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~-~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~ 281 (540)
|+|+ .++|++.|-+.++|+. .+..+..+.+|. ..|..++..++...++|++.|+.+++|++....
T Consensus 226 ~~~n--~i~t~gedctcrvW~~-~~~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~r~ 291 (967)
T KOG0974|consen 226 FLPN--RIITVGEDCTCRVWGV-NGTQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNGRG 291 (967)
T ss_pred eccc--eeEEeccceEEEEEec-ccceehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhccc
Confidence 9988 8999999999999976 556666777775 569999999999999999999999999987643
|
|
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=99.53 E-value=8.4e-13 Score=112.51 Aligned_cols=116 Identities=12% Similarity=0.261 Sum_probs=92.7
Q ss_pred cccEEEEEecC--CeeEe--eeCCCeEEEEeCCCCceEEeeeCCceEEEEEecCCcEEEeecC---CCeEEEEeccccch
Q psy18231 378 RDSITSVHVSD--HEILT--ASLDCRIRRYDIRTGNLVTDYVGEPIVDACFTRDCQCILTCST---DECLRLFDKATGEL 450 (540)
Q Consensus 378 ~~~v~~l~~~~--~~l~~--~~~dg~i~iwd~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~---dg~i~i~d~~~~~~ 450 (540)
.++|.+++|+| +.+++ |..++.|.+||++ ++.+..+....+..+.|+|+|++|++++. .|.|.+||.++.+.
T Consensus 59 ~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~-~~~i~~~~~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~ 137 (194)
T PF08662_consen 59 EGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVK-GKKIFSFGTQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKK 137 (194)
T ss_pred CCceEEEEECcCCCEEEEEEccCCcccEEEcCc-ccEeEeecCCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEE
Confidence 45699999999 55443 4467899999997 77888888888999999999999999874 46799999998888
Q ss_pred hhhhccCcCCcceEEEEecCCCCeEEEeeC------CCcEEEEEecCCcceeEEE
Q psy18231 451 LEEYKGHKSGDFRIECCLDSKDSQIFCGSS------DGKIYKWQLVDSSQISTLI 499 (540)
Q Consensus 451 ~~~~~~~~~~v~~~~~~~s~~~~~l~s~s~------dg~i~iwd~~~~~~~~~~~ 499 (540)
+.++.... + ..++|+|||++|++++. |+.++||+. +|+.+....
T Consensus 138 i~~~~~~~--~--t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~-~G~~l~~~~ 187 (194)
T PF08662_consen 138 ISTFEHSD--A--TDVEWSPDGRYLATATTSPRLRVDNGFKIWSF-QGRLLYKKP 187 (194)
T ss_pred eeccccCc--E--EEEEEcCCCCEEEEEEeccceeccccEEEEEe-cCeEeEecc
Confidence 87775332 3 34499999999998874 788999996 577665543
|
|
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=99.53 E-value=9.3e-11 Score=110.70 Aligned_cols=279 Identities=12% Similarity=0.131 Sum_probs=172.0
Q ss_pred EEEeeCC----CcEEEEcC--CCCeeE--EEeecCCcceeEEEEeeCCCeEEEeeC----CCeEEEEEcCCC--c--eeE
Q psy18231 179 CLTCGSD----KKIKLWNP--YRNLLL--KTYGGHAHEVNDATAACDSSQIASGAS----DKSVILWEVTTG--Q--PVR 242 (540)
Q Consensus 179 lat~~~d----g~i~iwd~--~~~~~~--~~~~~h~~~v~~l~~sp~~~~l~s~s~----dg~i~iwd~~~~--~--~~~ 242 (540)
+++|+.. +.|.+|++ ++++.. .... -......++++|++++|.++.. ++.|..|++... + .+.
T Consensus 2 ~~vgsy~~~~~~gI~~~~~d~~~g~l~~~~~~~-~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~ 80 (345)
T PF10282_consen 2 LYVGSYTNGKGGGIYVFRFDEETGTLTLVQTVA-EGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLN 80 (345)
T ss_dssp EEEEECCSSSSTEEEEEEEETTTTEEEEEEEEE-ESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEE
T ss_pred EEEEcCCCCCCCcEEEEEEcCCCCCceEeeeec-CCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEee
Confidence 4555555 78888887 455432 2222 3445667999999999998876 579999998764 2 233
Q ss_pred eccccCCceeEEEECCCCCEEEEecC-CCcEEEEEecCCCCCCcchhhhhHhhhhcCCceeEEEEeecccccccccCcee
Q psy18231 243 RWREHASKVTCVKFNEDSSVVISGSQ-DNTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHLSNGLLT 321 (540)
Q Consensus 243 ~~~~h~~~v~~~~~~~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (540)
...........++++|++++|+++.. +|+|.++++.........
T Consensus 81 ~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~----------------------------------- 125 (345)
T PF10282_consen 81 SVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEV----------------------------------- 125 (345)
T ss_dssp EEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEE-----------------------------------
T ss_pred eeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCccccee-----------------------------------
Confidence 33334455678999999999988864 889999999874210000
Q ss_pred eEEEeeeecccccceeeeeeccceeEEEeecccceecccccccccccchhhhhhcccccEEEEEecC--CeeEeee-CCC
Q psy18231 322 KLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEARDSITSVHVSD--HEILTAS-LDC 398 (540)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~--~~l~~~~-~dg 398 (540)
.. .....+. .............++.++| +++++.. ...
T Consensus 126 --~~-----------------------~~~~~g~--------------g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D 166 (345)
T PF10282_consen 126 --VQ-----------------------TVRHEGS--------------GPNPDRQEGPHPHQVVFSPDGRFVYVPDLGAD 166 (345)
T ss_dssp --EE-----------------------EEESEEE--------------ESSTTTTSSTCEEEEEE-TTSSEEEEEETTTT
T ss_pred --ee-----------------------ecccCCC--------------CCcccccccccceeEEECCCCCEEEEEecCCC
Confidence 00 0000000 0000111234567788888 5555543 345
Q ss_pred eEEEEeCCCCc--eEE--ee---eCCceEEEEEecCCcEEEeec-CCCeEEEEecc--ccc--hhhhhcc----CcCCcc
Q psy18231 399 RIRRYDIRTGN--LVT--DY---VGEPIVDACFTRDCQCILTCS-TDECLRLFDKA--TGE--LLEEYKG----HKSGDF 462 (540)
Q Consensus 399 ~i~iwd~~~~~--~~~--~~---~~~~i~~~~~sp~~~~l~~~~-~dg~i~i~d~~--~~~--~~~~~~~----~~~~v~ 462 (540)
.|.+|+++... +.. .+ .+..-..++|+|+++++++.. .++.|.++++. ++. .+..+.. ......
T Consensus 167 ~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 246 (345)
T PF10282_consen 167 RVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENA 246 (345)
T ss_dssp EEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSS
T ss_pred EEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCC
Confidence 79999997655 321 22 236789999999999886655 47889999987 332 1221111 111123
Q ss_pred eEEEEecCCCCeEEEee-CCCcEEEEEec--CCcc--eeEEEecccceeeeEEEEcCCCcEEEeec--CCeeEEEEccc
Q psy18231 463 RIECCLDSKDSQIFCGS-SDGKIYKWQLV--DSSQ--ISTLIHSVGKAVVNSLCSHPTRKHIMSAC--GNNVKLWTAEE 534 (540)
Q Consensus 463 ~~~~~~s~~~~~l~s~s-~dg~i~iwd~~--~~~~--~~~~~~~~~~~~v~~l~~s~d~~~l~s~~--d~~i~iw~~~~ 534 (540)
.-.++++|||++|+++. .++.|.+|++. +++. +..+. ......+.++++|+|++|+++. ++.|.+|+++.
T Consensus 247 ~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~--~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~ 323 (345)
T PF10282_consen 247 PAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVP--TGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDP 323 (345)
T ss_dssp EEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEE--ESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEET
T ss_pred ceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEe--CCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEeC
Confidence 44558999999977765 56789999993 2333 23333 2344589999999999999887 78999998853
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >KOG2315|consensus | Back alignment and domain information |
|---|
Probab=99.53 E-value=7.1e-12 Score=115.55 Aligned_cols=320 Identities=14% Similarity=0.166 Sum_probs=198.3
Q ss_pred cccceeeeecccccc-eeeeeecCeEEEEeCCCCCEEEEe-----eCC-----CcEEEEcCCCCeeEEEeecCCcceeEE
Q psy18231 144 PKEWSIRVYRPLTVN-RELFVLSGLMHTRFPVDGSYCLTC-----GSD-----KKIKLWNPYRNLLLKTYGGHAHEVNDA 212 (540)
Q Consensus 144 ~~~~~i~~~~~~~~~-~~~~h~~~v~~v~~spdg~~lat~-----~~d-----g~i~iwd~~~~~~~~~~~~h~~~v~~l 212 (540)
..+..+++++..... ........+.++.|||-|.+|.|= ..+ -.+.+|+++++.....+......-++.
T Consensus 52 ~~~~~v~i~~~~~~~~~lt~~~~~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~~vet~~~~s~~q~k~Q~~W~~ 131 (566)
T KOG2315|consen 52 SDNQVVKVFEIATLKVVLCVELKKTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVLVYNVETGVQRSQIQKKMQNGWVP 131 (566)
T ss_pred EcCCeEEEEEccCCcEEEEeccceeeeeeecccccccccccccccccCCCCCCCceeeeeeccceehhheehhhhcCccc
Confidence 344455566555442 122222378999999999999862 112 357799999966655554333333789
Q ss_pred EEeeCCCeEEEeeCCCeEEEEEcCCCceeEeccccCCceeEEEECCCC--CEEEE-----ecCCCcEEEEEecCCCCCCc
Q psy18231 213 TAACDSSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDS--SVVIS-----GSQDNTVMMWDVKSRSHHPI 285 (540)
Q Consensus 213 ~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~--~~l~s-----~~~dg~i~iwd~~~~~~~~~ 285 (540)
.|++|..+ ++--..+.+.+|++.+.+.+. -+-|...|+.+.++|.+ .++++ .|.-+.+++|..........
T Consensus 132 qfs~dEsl-~arlv~nev~f~~~~~f~~~~-~kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~ 209 (566)
T KOG2315|consen 132 QFSIDESL-AARLVSNEVQFYDLGSFKTIQ-HKLSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQP 209 (566)
T ss_pred ccccchhh-hhhhhcceEEEEecCCcccee-eeeeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccch
Confidence 99988764 333345789999987744332 23478889999999963 34443 35566899998874332111
Q ss_pred chhhhhHhhhhcCCceeEEEEeecccccccccCceeeEEEeeeeccccccee--------eeeeccceeEEEeeccccee
Q psy18231 286 QVRCLNEALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLS--------GVLMSTQHLMVLLDFLGSTQ 357 (540)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~ 357 (540)
. ....-+ ..+.+.+.|+.....-++. ...+.....+.+.+..|...
T Consensus 210 ~--a~ksFF------------------------kadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~ 263 (566)
T KOG2315|consen 210 V--ANKSFF------------------------KADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESV 263 (566)
T ss_pred h--hhcccc------------------------ccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceE
Confidence 1 000000 0112222222211111110 11122233444444332222
Q ss_pred cccccccccccchhhhhhcccccEEEEEecC--CeeE--eeeCCCeEEEEeCCCCceEEeeeCCceEEEEEecCCcEEEe
Q psy18231 358 IGDVTPISIHNSCFQALKEARDSITSVHVSD--HEIL--TASLDCRIRRYDIRTGNLVTDYVGEPIVDACFTRDCQCILT 433 (540)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~--~~l~--~~~~dg~i~iwd~~~~~~~~~~~~~~i~~~~~sp~~~~l~~ 433 (540)
. .--...++|.++.|++ ..++ -|-.-.++.|||++ ++++..+..++-+++-|+|.|++++.
T Consensus 264 ~--------------V~L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr-~~~v~df~egpRN~~~fnp~g~ii~l 328 (566)
T KOG2315|consen 264 S--------------VPLLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR-GKPVFDFPEGPRNTAFFNPHGNIILL 328 (566)
T ss_pred E--------------EecCCCCCceEEEECCCCCEEEEEEecccceEEEEcCC-CCEeEeCCCCCccceEECCCCCEEEE
Confidence 1 1113368999999999 3333 34567889999997 88889998899999999999999988
Q ss_pred ecC---CCeEEEEeccccchhhhhccCcCCcceEEEEecCCCCeEEEee------CCCcEEEEEecCCcceeEEEecccc
Q psy18231 434 CST---DECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGS------SDGKIYKWQLVDSSQISTLIHSVGK 504 (540)
Q Consensus 434 ~~~---dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~s~~~~~l~s~s------~dg~i~iwd~~~~~~~~~~~~~~~~ 504 (540)
++. -|.+.+||+.+.+.+..+..... .-+.|+|||+++++++ -|+.++||+. +|..+..... .
T Consensus 329 AGFGNL~G~mEvwDv~n~K~i~~~~a~~t----t~~eW~PdGe~flTATTaPRlrvdNg~Kiwhy-tG~~l~~~~f---~ 400 (566)
T KOG2315|consen 329 AGFGNLPGDMEVWDVPNRKLIAKFKAANT----TVFEWSPDGEYFLTATTAPRLRVDNGIKIWHY-TGSLLHEKMF---K 400 (566)
T ss_pred eecCCCCCceEEEeccchhhccccccCCc----eEEEEcCCCcEEEEEeccccEEecCCeEEEEe-cCceeehhhh---h
Confidence 775 48899999999999988876553 3348999999999887 4788999995 5655443321 1
Q ss_pred eeeeEEEEcC
Q psy18231 505 AVVNSLCSHP 514 (540)
Q Consensus 505 ~~v~~l~~s~ 514 (540)
.....+.|-|
T Consensus 401 sEL~qv~W~P 410 (566)
T KOG2315|consen 401 SELLQVEWRP 410 (566)
T ss_pred HhHhheeeee
Confidence 1345555554
|
|
| >KOG2321|consensus | Back alignment and domain information |
|---|
Probab=99.53 E-value=7.7e-13 Score=121.91 Aligned_cols=237 Identities=11% Similarity=0.164 Sum_probs=166.0
Q ss_pred cCCcceeEEEEeeCCCeE-EEeeCCCeEEEEEcCCCceeEecccc--CCceeEEEECCCCCEEEEecCCCcEEEEEecCC
Q psy18231 204 GHAHEVNDATAACDSSQI-ASGASDKSVILWEVTTGQPVRRWREH--ASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSR 280 (540)
Q Consensus 204 ~h~~~v~~l~~sp~~~~l-~s~s~dg~i~iwd~~~~~~~~~~~~h--~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~ 280 (540)
.|...-+.|..+|||+|+ |+|..--.|++||+.+-... +..| ...|.-.-.+.|-..++.-..|.+|-+..--..
T Consensus 49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLK--FERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~G~ 126 (703)
T KOG2321|consen 49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLK--FERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYGR 126 (703)
T ss_pred CCccccceeEecCCCcEEEEecccCCceEEEEcccceee--eeecccccceeEEEeccchhhheEeecCceeeehhhcCe
Confidence 367778899999999985 56777889999999776543 2333 233444444444444555556666655432111
Q ss_pred CCCCcchhhhhHhhhhcCCceeEEEEeecccccccccCceeeEEEeeeecccccceeeeeeccceeEEEeecccceeccc
Q psy18231 281 SHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGD 360 (540)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (540)
. ..+.
T Consensus 127 h-y~~R-------------------------------------------------------------------------- 131 (703)
T KOG2321|consen 127 H-YRTR-------------------------------------------------------------------------- 131 (703)
T ss_pred e-eeee--------------------------------------------------------------------------
Confidence 0 0000
Q ss_pred ccccccccchhhhhhcccccEEEEEecC--CeeEeeeCCCeEEEEeCCCCceEEeee--CCceEEEEEecCCcEEEeecC
Q psy18231 361 VTPISIHNSCFQALKEARDSITSVHVSD--HEILTASLDCRIRRYDIRTGNLVTDYV--GEPIVDACFTRDCQCILTCST 436 (540)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~v~~l~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~--~~~i~~~~~sp~~~~l~~~~~ 436 (540)
-...-..++++. --|++++....|+-++++.|..+..+. ...++++..++...+|++|+.
T Consensus 132 ----------------IP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~ 195 (703)
T KOG2321|consen 132 ----------------IPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTE 195 (703)
T ss_pred ----------------cCcCCccccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecCccceEEeccc
Confidence 001112333333 224455555678889999999887775 478999999999999999999
Q ss_pred CCeEEEEeccccchhhhhcc------CcC-----CcceEEEEecCCCCeEEEeeCCCcEEEEEecCCcceeEEEecccce
Q psy18231 437 DECLRLFDKATGELLEEYKG------HKS-----GDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKA 505 (540)
Q Consensus 437 dg~i~i~d~~~~~~~~~~~~------~~~-----~v~~~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~ 505 (540)
+|.|..||.++...+.++.. |.+ .|+++ .|+.+|-.+++|+.+|.|.|||+++.+++....+ +..-
T Consensus 196 ~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal--~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh-~~e~ 272 (703)
T KOG2321|consen 196 DGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTAL--KFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDH-GYEL 272 (703)
T ss_pred CceEEEecchhhhhheeeecccccCCCccccccCcceEE--EecCCceeEEeeccCCcEEEEEcccCCceeeccc-CCcc
Confidence 99999999998776655432 222 25555 8999899999999999999999999998877753 4556
Q ss_pred eeeEEEEcCC--CcEEEeecCCeeEEEEccccc
Q psy18231 506 VVNSLCSHPT--RKHIMSACGNNVKLWTAEEDY 536 (540)
Q Consensus 506 ~v~~l~~s~d--~~~l~s~~d~~i~iw~~~~~~ 536 (540)
+|..+.|.+. +..|++.....++|||-.+|.
T Consensus 273 pi~~l~~~~~~~q~~v~S~Dk~~~kiWd~~~Gk 305 (703)
T KOG2321|consen 273 PIKKLDWQDTDQQNKVVSMDKRILKIWDECTGK 305 (703)
T ss_pred ceeeecccccCCCceEEecchHHhhhcccccCC
Confidence 8999999765 567777777899999987764
|
|
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=99.53 E-value=5.2e-11 Score=109.13 Aligned_cols=264 Identities=11% Similarity=0.123 Sum_probs=166.8
Q ss_pred CCCEEEEeeCC-----CcEEEEcCCCCeeEEEeecCCcceeEEEEeeCCCeEEEeeC----------CCeEEEEEcCCCc
Q psy18231 175 DGSYCLTCGSD-----KKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGAS----------DKSVILWEVTTGQ 239 (540)
Q Consensus 175 dg~~lat~~~d-----g~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~----------dg~i~iwd~~~~~ 239 (540)
+++++++.... ++|.+.|..+++.+..+..-..+- .+ +|||++.|+.+.. +..|.+||+.+.+
T Consensus 11 ~~~~v~V~d~~~~~~~~~v~ViD~~~~~v~g~i~~G~~P~-~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~ 88 (352)
T TIGR02658 11 DARRVYVLDPGHFAATTQVYTIDGEAGRVLGMTDGGFLPN-PV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHL 88 (352)
T ss_pred CCCEEEEECCcccccCceEEEEECCCCEEEEEEEccCCCc-ee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCc
Confidence 45555544332 899999999999999886433332 34 9999999887765 7899999999999
Q ss_pred eeEecccc-------CCceeEEEECCCCCEEEEec-C-CCcEEEEEecCCCCCCcchhhhhHhhhhcCCceeEEEEeecc
Q psy18231 240 PVRRWREH-------ASKVTCVKFNEDSSVVISGS-Q-DNTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKS 310 (540)
Q Consensus 240 ~~~~~~~h-------~~~v~~~~~~~~~~~l~s~~-~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (540)
.+..+.-. ......++++|||++|+... . +..|.+.|+.+++.....
T Consensus 89 ~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei------------------------ 144 (352)
T TIGR02658 89 PIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMM------------------------ 144 (352)
T ss_pred EEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEE------------------------
Confidence 98877632 22344789999999998766 3 689999999988721000
Q ss_pred cccccccCceeeEEEeeeecccccceeeeeeccceeEEEeecccceecccccccccccchhhhhhcccccEEEEEecCCe
Q psy18231 311 TKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEARDSITSVHVSDHE 390 (540)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~ 390 (540)
.. .+...-...++..
T Consensus 145 -----------------------------~v------------------------------------p~~~~vy~t~e~~ 159 (352)
T TIGR02658 145 -----------------------------DV------------------------------------PDCYHIFPTANDT 159 (352)
T ss_pred -----------------------------eC------------------------------------CCCcEEEEecCCc
Confidence 00 0000011111111
Q ss_pred eEeeeCCCeEEEEeCCC-CceE----EeeeC--Cce-EEEEEec-CCcEEEeecCCCeEEEEecccc-----chhhhhcc
Q psy18231 391 ILTASLDCRIRRYDIRT-GNLV----TDYVG--EPI-VDACFTR-DCQCILTCSTDECLRLFDKATG-----ELLEEYKG 456 (540)
Q Consensus 391 l~~~~~dg~i~iwd~~~-~~~~----~~~~~--~~i-~~~~~sp-~~~~l~~~~~dg~i~i~d~~~~-----~~~~~~~~ 456 (540)
..+-+.||......+.+ ++.. ..+.. .++ ..-.|++ +|+++.+..+ |.|.+.|+... +.+..+..
T Consensus 160 ~~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~ 238 (352)
T TIGR02658 160 FFMHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTE 238 (352)
T ss_pred cEEEeecCceEEEEecCCCceEEeeeeeecCCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccc
Confidence 22223333333322221 1100 00111 000 0014566 8888877776 99999996433 22222211
Q ss_pred -------CcCCcceEEEEecCCCCeEEEee----------CCCcEEEEEecCCcceeEEEecccceeeeEEEEcCCCc-E
Q psy18231 457 -------HKSGDFRIECCLDSKDSQIFCGS----------SDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRK-H 518 (540)
Q Consensus 457 -------~~~~v~~~~~~~s~~~~~l~s~s----------~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~-~ 518 (540)
..+....+ +++++++.++... ..+.|.++|..+++.+..+.. ...+..++++||++ +
T Consensus 239 ~~~~~~wrP~g~q~i--a~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~v---G~~~~~iavS~Dgkp~ 313 (352)
T TIGR02658 239 AEKADGWRPGGWQQV--AYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIEL---GHEIDSINVSQDAKPL 313 (352)
T ss_pred cccccccCCCcceeE--EEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeC---CCceeeEEECCCCCeE
Confidence 11222224 8999999888743 225799999999999999873 45789999999999 8
Q ss_pred EEeec--CCeeEEEEcccc
Q psy18231 519 IMSAC--GNNVKLWTAEED 535 (540)
Q Consensus 519 l~s~~--d~~i~iw~~~~~ 535 (540)
|++.. ++.|.+.|+.++
T Consensus 314 lyvtn~~s~~VsViD~~t~ 332 (352)
T TIGR02658 314 LYALSTGDKTLYIFDAETG 332 (352)
T ss_pred EEEeCCCCCcEEEEECcCC
Confidence 87666 788999999776
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >KOG2139|consensus | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.8e-12 Score=112.88 Aligned_cols=207 Identities=14% Similarity=0.277 Sum_probs=142.6
Q ss_pred CcceeEEEEeeCCCeEEEeeCCCeEEEEEcCCCceeEecc-ccCCceeEEEECCC-CCEEEEecCCCcEEEEEecCCCCC
Q psy18231 206 AHEVNDATAACDSSQIASGASDKSVILWEVTTGQPVRRWR-EHASKVTCVKFNED-SSVVISGSQDNTVMMWDVKSRSHH 283 (540)
Q Consensus 206 ~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~h~~~v~~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~ 283 (540)
...+..++|++.-..+|++..|-.|++||-.+ ++...++ .....|.+++|-|. +..|+.|+..| |.+|........
T Consensus 98 ~~dlr~~aWhqH~~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgCr~g-IciW~~s~tln~ 175 (445)
T KOG2139|consen 98 EIDLRGVAWHQHIIAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGCRAG-ICIWSDSRTLNA 175 (445)
T ss_pred hcceeeEeechhhhhhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeeecce-eEEEEcCccccc
Confidence 34577889998666789999999999999766 4444444 34568999999994 46777887654 999986542200
Q ss_pred CcchhhhhHhhhhcCCceeEEEEeecccccccccCceeeEEEeeeecccccceeeeeeccceeEEEeecccceecccccc
Q psy18231 284 PIQVRCLNEALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTP 363 (540)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (540)
T Consensus 176 -------------------------------------------------------------------------------- 175 (445)
T KOG2139|consen 176 -------------------------------------------------------------------------------- 175 (445)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccchhhhhhcccccEEEEEecCCeeEeeeCCCeEEEEeCCCCceEEeeeC-CceEEEEEecCCcEEEeecC-CCeEE
Q psy18231 364 ISIHNSCFQALKEARDSITSVHVSDHEILTASLDCRIRRYDIRTGNLVTDYVG-EPIVDACFTRDCQCILTCST-DECLR 441 (540)
Q Consensus 364 ~~~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~i~~~~~sp~~~~l~~~~~-dg~i~ 441 (540)
. +...+...+... +....+ .+|+++.|.+||..+++++. |..|.
T Consensus 176 ---------------~----------r~~~~~s~~~~q---------vl~~pgh~pVtsmqwn~dgt~l~tAS~gsssi~ 221 (445)
T KOG2139|consen 176 ---------------N----------RNIRMMSTHHLQ---------VLQDPGHNPVTSMQWNEDGTILVTASFGSSSIM 221 (445)
T ss_pred ---------------c----------cccccccccchh---------heeCCCCceeeEEEEcCCCCEEeecccCcceEE
Confidence 0 000000000011 111122 47999999999999998875 67899
Q ss_pred EEeccccchhhhhccCcCCcceEEEEecCCCCeEEEeeCCCcEEEEEec-CCcceeEEEecccceeeeEEEEcCCCcEEE
Q psy18231 442 LFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLV-DSSQISTLIHSVGKAVVNSLCSHPTRKHIM 520 (540)
Q Consensus 442 i~d~~~~~~~~~~~~~~~~v~~~~~~~s~~~~~l~s~s~dg~i~iwd~~-~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~ 520 (540)
|||..++..+......-+.+.-+ .|||||.+|.+++-|+..++|+.. +.......- ..+.|+..+|+|+|++|.
T Consensus 222 iWdpdtg~~~pL~~~glgg~slL--kwSPdgd~lfaAt~davfrlw~e~q~wt~erw~l---gsgrvqtacWspcGsfLL 296 (445)
T KOG2139|consen 222 IWDPDTGQKIPLIPKGLGGFSLL--KWSPDGDVLFAATCDAVFRLWQENQSWTKERWIL---GSGRVQTACWSPCGSFLL 296 (445)
T ss_pred EEcCCCCCcccccccCCCceeeE--EEcCCCCEEEEecccceeeeehhcccceecceec---cCCceeeeeecCCCCEEE
Confidence 99999987665543333445445 899999999999999999999543 333333332 345899999999999888
Q ss_pred eecCCeeEEEEcc
Q psy18231 521 SACGNNVKLWTAE 533 (540)
Q Consensus 521 s~~d~~i~iw~~~ 533 (540)
-+..+.-++|.+.
T Consensus 297 f~~sgsp~lysl~ 309 (445)
T KOG2139|consen 297 FACSGSPRLYSLT 309 (445)
T ss_pred EEEcCCceEEEEe
Confidence 7765555666654
|
|
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.1e-12 Score=111.83 Aligned_cols=151 Identities=14% Similarity=0.203 Sum_probs=109.1
Q ss_pred eEEEEeeCCCeEEEeeC----------CCeEEEEEcCC-CceeEeccc-cCCceeEEEECCCCCEEEEe--cCCCcEEEE
Q psy18231 210 NDATAACDSSQIASGAS----------DKSVILWEVTT-GQPVRRWRE-HASKVTCVKFNEDSSVVISG--SQDNTVMMW 275 (540)
Q Consensus 210 ~~l~~sp~~~~l~s~s~----------dg~i~iwd~~~-~~~~~~~~~-h~~~v~~~~~~~~~~~l~s~--~~dg~i~iw 275 (540)
..+.|+|+|.+|+.-.. -+...+|.++. +.....+.- ..++|.+++|+|+|+.+++. ..++.|.+|
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~ly 88 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLY 88 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEE
Confidence 35788998888764332 13466666633 233444432 34579999999999886544 456799999
Q ss_pred EecCCCCCCcchhhhhHhhhhcCCceeEEEEeecccccccccCceeeEEEeeeecccccceeeeeeccceeEEEeecccc
Q psy18231 276 DVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGS 355 (540)
Q Consensus 276 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (540)
|++...
T Consensus 89 d~~~~~-------------------------------------------------------------------------- 94 (194)
T PF08662_consen 89 DVKGKK-------------------------------------------------------------------------- 94 (194)
T ss_pred cCcccE--------------------------------------------------------------------------
Confidence 986322
Q ss_pred eecccccccccccchhhhhhcccccEEEEEecC--CeeEeeeC---CCeEEEEeCCCCceEEeeeCCceEEEEEecCCcE
Q psy18231 356 TQIGDVTPISIHNSCFQALKEARDSITSVHVSD--HEILTASL---DCRIRRYDIRTGNLVTDYVGEPIVDACFTRDCQC 430 (540)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~--~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~~i~~~~~sp~~~~ 430 (540)
...-+...+..+.|+| +++++++. .|.|.+||.++.+.+.......++.++|+|||++
T Consensus 95 -----------------i~~~~~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~~~~~t~~~WsPdGr~ 157 (194)
T PF08662_consen 95 -----------------IFSFGTQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFEHSDATDVEWSPDGRY 157 (194)
T ss_pred -----------------eEeecCCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccccCcEEEEEEcCCCCE
Confidence 1111245667899999 78888764 4679999999999998888888999999999999
Q ss_pred EEeecC------CCeEEEEeccccchhh
Q psy18231 431 ILTCST------DECLRLFDKATGELLE 452 (540)
Q Consensus 431 l~~~~~------dg~i~i~d~~~~~~~~ 452 (540)
|+++.. |+.++||+.. |+.+.
T Consensus 158 ~~ta~t~~r~~~dng~~Iw~~~-G~~l~ 184 (194)
T PF08662_consen 158 LATATTSPRLRVDNGFKIWSFQ-GRLLY 184 (194)
T ss_pred EEEEEeccceeccccEEEEEec-CeEeE
Confidence 999875 7889999974 55443
|
|
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=99.49 E-value=9.7e-12 Score=121.82 Aligned_cols=230 Identities=14% Similarity=0.086 Sum_probs=145.8
Q ss_pred CCcEEEEcCCCCeeEEEeecCCcceeEEEEeeCCCeEEEeeCC---CeEEEEEcCCCceeEeccccCCceeEEEECCCCC
Q psy18231 185 DKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASD---KSVILWEVTTGQPVRRWREHASKVTCVKFNEDSS 261 (540)
Q Consensus 185 dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~d---g~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~ 261 (540)
...|.++|.... ....+..+...+.+.+|+|||++|+.++.+ ..|.+||+.+++... +..+.+.+.++.|+||++
T Consensus 169 ~~~l~~~d~~g~-~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~-~~~~~~~~~~~~~spDg~ 246 (417)
T TIGR02800 169 RYELQVADYDGA-NPQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREK-VASFPGMNGAPAFSPDGS 246 (417)
T ss_pred cceEEEEcCCCC-CCEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCC
Confidence 346888887543 345555577789999999999999887654 479999998886543 334556677899999998
Q ss_pred EEE-EecCCC--cEEEEEecCCCCCCcchhhhhHhhhhcCCceeEEEEeecccccccccCceeeEEEeeeecccccceee
Q psy18231 262 VVI-SGSQDN--TVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSG 338 (540)
Q Consensus 262 ~l~-s~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (540)
.|+ +.+.++ .|.+||+.++....+
T Consensus 247 ~l~~~~~~~~~~~i~~~d~~~~~~~~l----------------------------------------------------- 273 (417)
T TIGR02800 247 KLAVSLSKDGNPDIYVMDLDGKQLTRL----------------------------------------------------- 273 (417)
T ss_pred EEEEEECCCCCccEEEEECCCCCEEEC-----------------------------------------------------
Confidence 776 444444 477888776542110
Q ss_pred eeeccceeEEEeecccceecccccccccccchhhhhhcccccEEEEEecC--CeeEeeeC-CC--eEEEEeCCCCceEEe
Q psy18231 339 VLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEARDSITSVHVSD--HEILTASL-DC--RIRRYDIRTGNLVTD 413 (540)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~--~~l~~~~~-dg--~i~iwd~~~~~~~~~ 413 (540)
..+........|++ +.++..+. ++ .|.++|+.+++....
T Consensus 274 ------------------------------------~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~l 317 (417)
T TIGR02800 274 ------------------------------------TNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVRRL 317 (417)
T ss_pred ------------------------------------CCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEEEe
Confidence 11111122345555 45554443 33 588888887764332
Q ss_pred e-eCCceEEEEEecCCcEEEeecCCC---eEEEEeccccchhhhhccCcCCcceEEEEecCCCCeEEEeeCCC---cEEE
Q psy18231 414 Y-VGEPIVDACFTRDCQCILTCSTDE---CLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDG---KIYK 486 (540)
Q Consensus 414 ~-~~~~i~~~~~sp~~~~l~~~~~dg---~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~s~~~~~l~s~s~dg---~i~i 486 (540)
. .+.......|+|+|++++..+.++ .|.+||+.++... .+.... ..... .|+|||++|+..+.++ .+++
T Consensus 318 ~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~-~l~~~~-~~~~p--~~spdg~~l~~~~~~~~~~~l~~ 393 (417)
T TIGR02800 318 TFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGER-VLTDTG-LDESP--SFAPNGRMILYATTRGGRGVLGL 393 (417)
T ss_pred ecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeE-EccCCC-CCCCc--eECCCCCEEEEEEeCCCcEEEEE
Confidence 2 345677889999999999888775 7899998875432 222221 12223 7999999988877654 3444
Q ss_pred EEecCCcceeEEEecccceeeeEEEE
Q psy18231 487 WQLVDSSQISTLIHSVGKAVVNSLCS 512 (540)
Q Consensus 487 wd~~~~~~~~~~~~~~~~~~v~~l~~ 512 (540)
.+ .+++....+. .+.+.+..++|
T Consensus 394 ~~-~~g~~~~~~~--~~~g~~~~~~w 416 (417)
T TIGR02800 394 VS-TDGRFRARLP--LGNGDVREPAW 416 (417)
T ss_pred EE-CCCceeeECC--CCCCCcCCCCC
Confidence 44 3455555554 33445555555
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >KOG1409|consensus | Back alignment and domain information |
|---|
Probab=99.49 E-value=3.9e-12 Score=110.11 Aligned_cols=305 Identities=10% Similarity=0.159 Sum_probs=200.2
Q ss_pred hhhhcccccceeeeecccccc---eeeeee--cCeEEEEeCCCCCEEEEeeCCCcEEEEcCC----CCeeEEEeecCCcc
Q psy18231 138 RILYELPKEWSIRVYRPLTVN---RELFVL--SGLMHTRFPVDGSYCLTCGSDKKIKLWNPY----RNLLLKTYGGHAHE 208 (540)
Q Consensus 138 ~~~~~~~~~~~i~~~~~~~~~---~~~~h~--~~v~~v~~spdg~~lat~~~dg~i~iwd~~----~~~~~~~~~~h~~~ 208 (540)
.-+++.+.+.++|+|...... ..+.|. .+++++.+.++.+.|++|-..|++.-+.+. +...++....|...
T Consensus 37 ~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngtvtefs~sedfnkm~~~r~~~~h~~~ 116 (404)
T KOG1409|consen 37 EGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGTVTEFALSEDFNKMTFLKDYLAHQAR 116 (404)
T ss_pred CCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecceEEEEEhhhhhhhcchhhhhhhhhcc
Confidence 345677888899999765532 223344 578999999999999999999999988654 44556667789999
Q ss_pred eeEEEEeeCCCeEEEeeCCCeEEEEEcCCCceeEeccccCCceeEEEECCCCCEEEEecCCCcEEEEEecCCCCCCcchh
Q psy18231 209 VNDATAACDSSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQVR 288 (540)
Q Consensus 209 v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 288 (540)
|..+-|+-...++++.+.|..+.---.+.+..+..+.- ...-+++.+.-. +...|...|.|.+-.+......+
T Consensus 117 v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~-~~~~t~~~~d~~--~~fvGd~~gqvt~lr~~~~~~~~---- 189 (404)
T KOG1409|consen 117 VSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNF-ETPASALQFDAL--YAFVGDHSGQITMLKLEQNGCQL---- 189 (404)
T ss_pred eeeEEecCCceeEEEeccccceEEEeeccCCcccceEe-eccCCCCceeeE--EEEecccccceEEEEEeecCCce----
Confidence 99999999999999999998776555555554332210 111111222111 45556666777766665443222
Q ss_pred hhhHhhhhcCCceeEEEEeecccccccccCceeeEEEeeeecccccceeeeeeccceeEEEeecccceeccccccccccc
Q psy18231 289 CLNEALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHN 368 (540)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (540)
T Consensus 190 -------------------------------------------------------------------------------- 189 (404)
T KOG1409|consen 190 -------------------------------------------------------------------------------- 189 (404)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred chhhhhhcccccEEEEEecC--CeeEeeeCCCeEEEEeCCCCceE-EeeeC--CceEEEEEecCCcEEEeecCCCeEEEE
Q psy18231 369 SCFQALKEARDSITSVHVSD--HEILTASLDCRIRRYDIRTGNLV-TDYVG--EPIVDACFTRDCQCILTCSTDECLRLF 443 (540)
Q Consensus 369 ~~~~~~~~~~~~v~~l~~~~--~~l~~~~~dg~i~iwd~~~~~~~-~~~~~--~~i~~~~~sp~~~~l~~~~~dg~i~i~ 443 (540)
+..+.+|.+.+.+++|.+ ..+++|..|..+.+||+..++-+ ..+.+ +.+..+...+--+.+.+++.||.|.+|
T Consensus 190 --i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w 267 (404)
T KOG1409|consen 190 --ITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHTRQLISCGEDGGIVVW 267 (404)
T ss_pred --EEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhhhhheeeeeccCCCeEEEE
Confidence 226789999999999998 88999999999999999865432 33333 578888888888899999999999999
Q ss_pred eccccchh----------h-------------------hhccCc----CCcceEEEEecCCCCeEEEeeCCCcEEEEEec
Q psy18231 444 DKATGELL----------E-------------------EYKGHK----SGDFRIECCLDSKDSQIFCGSSDGKIYKWQLV 490 (540)
Q Consensus 444 d~~~~~~~----------~-------------------~~~~~~----~~v~~~~~~~s~~~~~l~s~s~dg~i~iwd~~ 490 (540)
|+...... . -++-|. +...+. .-+.+.....+-+..-.+|+-|.-
T Consensus 268 ~mn~~r~etpewl~s~~cQ~c~qpffwn~~~m~~~k~~glr~h~crkcg~avc~--~c~s~~~~~p~mg~e~~vR~~~~c 345 (404)
T KOG1409|consen 268 NMNVKRVETPEWLDSDSCQKCNQPFFWNFRQMWDRKQLGLRQHHCRKCGKAVCG--KCSSNRSSYPTMGFEFSVRVCDSC 345 (404)
T ss_pred eccceeecCccccccchhhhhCchHHHHHHHHHhhhhhhhhhhhhhhhhhhcCc--ccccCccccccccceeEEEEeccc
Confidence 98643210 0 001111 000111 011111122333333445555421
Q ss_pred -------CCcceeEEEecccceeeeEEEEcCCCcEEEeec-CCeeEEEEcccc
Q psy18231 491 -------DSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC-GNNVKLWTAEED 535 (540)
Q Consensus 491 -------~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~-d~~i~iw~~~~~ 535 (540)
+..++.... .-...|+.+.+...-.+|+|++ |..|+|||+..-
T Consensus 346 ~~~i~~~~~t~LA~ph--ei~tgItamhlqetlglLvTsG~~Rvi~iwd~~~v 396 (404)
T KOG1409|consen 346 YPTIKDEERTPLAIPH--EIKTGITAMHLQETLGLLVTSGTDRVIKIWDVRSV 396 (404)
T ss_pred chhhhcCCCCcccccc--ccccceeEEEhhhhccceeecCCceEEEEEechhh
Confidence 123344443 2234699999998889999999 999999999753
|
|
| >COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.7e-11 Score=111.70 Aligned_cols=331 Identities=12% Similarity=0.179 Sum_probs=195.2
Q ss_pred ecCeEEEEeCCCCCEEEEeeCCCcEEEEcCCCCeeEEEeecCCcceeEEEEeeCCCeEEEeeCCC---------------
Q psy18231 164 LSGLMHTRFPVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDK--------------- 228 (540)
Q Consensus 164 ~~~v~~v~~spdg~~lat~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~dg--------------- 228 (540)
.-++..++|||.|.+|++... ..|.+|.-.....+..+. ...|..+.|+|++++|.+-+..+
T Consensus 32 ~~p~~~~~~SP~G~~l~~~~~-~~V~~~~g~~~~~l~~~~--~~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n 108 (561)
T COG5354 32 NWPVAYVSESPLGTYLFSEHA-AGVECWGGPSKAKLVRFR--HPDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKN 108 (561)
T ss_pred CcchhheeecCcchheehhhc-cceEEccccchhheeeee--cCCceecccCcccceeeeeccCCccChhhccCCccccC
Confidence 357889999999999998764 568899988777666665 45689999999999999876543
Q ss_pred eEEEEEcCCCceeEeccccCCc--ee-EEEECCCCCEEEEecCCCcEEEEEecCCCCCCcchhhhhHhhhhcCCceeEEE
Q psy18231 229 SVILWEVTTGQPVRRWREHASK--VT-CVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVH 305 (540)
Q Consensus 229 ~i~iwd~~~~~~~~~~~~h~~~--v~-~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (540)
.+.+||+.+|..+..+.....+ .+ -+.|+-+.++++-.. ...+.|+++ +..........+. +..+.
T Consensus 109 ~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv-~~sl~i~e~-t~n~~~~p~~~lr---------~~gi~ 177 (561)
T COG5354 109 NVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARVV-GSSLYIHEI-TDNIEEHPFKNLR---------PVGIL 177 (561)
T ss_pred ceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhhc-cCeEEEEec-CCccccCchhhcc---------cccee
Confidence 4999999999999988776655 45 678888888776553 346999997 3332111111100 11111
Q ss_pred Eeecccccccc--------cCceeeEEEeeeecccccceeeeeeccceeEEEeecccc--------------eec--ccc
Q psy18231 306 SLVKSTKNHLS--------NGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGS--------------TQI--GDV 361 (540)
Q Consensus 306 ~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~--~~~ 361 (540)
.+..++.+.-. .......+..+...........-++..++.-.-|...|. ... .++
T Consensus 178 dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnL 257 (561)
T COG5354 178 DFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNL 257 (561)
T ss_pred eEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccceeccceE
Confidence 11111111000 000000011111111111111111111110001110000 000 111
Q ss_pred cccccccchhhhhhcccccEEEEEecC--CeeEe--eeCCCeEEEEeCCCCceEEeeeCCceEEEEEecCCcEEEeecCC
Q psy18231 362 TPISIHNSCFQALKEARDSITSVHVSD--HEILT--ASLDCRIRRYDIRTGNLVTDYVGEPIVDACFTRDCQCILTCSTD 437 (540)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~v~~l~~~~--~~l~~--~~~dg~i~iwd~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d 437 (540)
....+.+..+.......++|...+|.| +.+++ |..+..+.++|++.. +...+....-+.+.|+|.+++++.++.|
T Consensus 258 yl~~~~e~~i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-l~~~~Pe~~rNT~~fsp~~r~il~agF~ 336 (561)
T COG5354 258 YLLRITERSIPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-LRFYFPEQKRNTIFFSPHERYILFAGFD 336 (561)
T ss_pred EEEeecccccceeccccccceeeeecccCCceeEEecccccceeecccccc-eEEecCCcccccccccCcccEEEEecCC
Confidence 111222222223335578999999988 44444 457889999999865 6666666777889999999999987764
Q ss_pred ---CeEEEEeccccchhh-hhccCcCCcceEEEEecCCCCeEEEee------CCCcEEEEEecCCcceeEEEecccceee
Q psy18231 438 ---ECLRLFDKATGELLE-EYKGHKSGDFRIECCLDSKDSQIFCGS------SDGKIYKWQLVDSSQISTLIHSVGKAVV 507 (540)
Q Consensus 438 ---g~i~i~d~~~~~~~~-~~~~~~~~v~~~~~~~s~~~~~l~s~s------~dg~i~iwd~~~~~~~~~~~~~~~~~~v 507 (540)
|.+-+||......+. .+.+... --+.|+||++++.+.. .|..|.|||+...+.. ..
T Consensus 337 nl~gni~i~~~~~rf~~~~~~~~~n~----s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g~~~f----------el 402 (561)
T COG5354 337 NLQGNIEIFDPAGRFKVAGAFNGLNT----SYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYGAKVF----------EL 402 (561)
T ss_pred ccccceEEeccCCceEEEEEeecCCc----eEeeccCCceEEEecCCCcccccCcceEEEEecCchhh----------hh
Confidence 679999987654333 5554432 2247999999987764 5788999997543322 24
Q ss_pred eEEEEcCCCcEEEeec
Q psy18231 508 NSLCSHPTRKHIMSAC 523 (540)
Q Consensus 508 ~~l~~s~d~~~l~s~~ 523 (540)
+.+.|.|.|++..+.+
T Consensus 403 ~~~~W~p~~~~~ttsS 418 (561)
T COG5354 403 TNITWDPSGQYVTTSS 418 (561)
T ss_pred hhccccCCcccceeec
Confidence 4566777776666655
|
|
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.9e-11 Score=119.83 Aligned_cols=231 Identities=12% Similarity=0.081 Sum_probs=146.0
Q ss_pred cEEEEcCCCCeeEEEeecCCcceeEEEEeeCCCeEEEeeCC---CeEEEEEcCCCceeEeccccCCceeEEEECCCCCEE
Q psy18231 187 KIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASD---KSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVV 263 (540)
Q Consensus 187 ~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~d---g~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l 263 (540)
.|.++|...+. ...+..+...+....|+|||+.|+..+.+ ..|.+||+.+++... +....+.+....|+|||+.|
T Consensus 180 ~l~~~d~~g~~-~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~-l~~~~g~~~~~~~SpDG~~l 257 (430)
T PRK00178 180 TLQRSDYDGAR-AVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ-ITNFEGLNGAPAWSPDGSKL 257 (430)
T ss_pred EEEEECCCCCC-ceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE-ccCCCCCcCCeEECCCCCEE
Confidence 47778876544 44555577889999999999999876644 368999998886543 33334455678999999887
Q ss_pred E-EecCCC--cEEEEEecCCCCCCcchhhhhHhhhhcCCceeEEEEeecccccccccCceeeEEEeeeecccccceeeee
Q psy18231 264 I-SGSQDN--TVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVL 340 (540)
Q Consensus 264 ~-s~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (540)
+ +.+.+| .|.+||+.+++...
T Consensus 258 a~~~~~~g~~~Iy~~d~~~~~~~~-------------------------------------------------------- 281 (430)
T PRK00178 258 AFVLSKDGNPEIYVMDLASRQLSR-------------------------------------------------------- 281 (430)
T ss_pred EEEEccCCCceEEEEECCCCCeEE--------------------------------------------------------
Confidence 6 444555 57777887654211
Q ss_pred eccceeEEEeecccceecccccccccccchhhhhhcccccEEEEEecC--CeeEeee-CCC--eEEEEeCCCCceEEee-
Q psy18231 341 MSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEARDSITSVHVSD--HEILTAS-LDC--RIRRYDIRTGNLVTDY- 414 (540)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~--~~l~~~~-~dg--~i~iwd~~~~~~~~~~- 414 (540)
+..+........|+| +.++..+ .+| .|.++|+.+++.....
T Consensus 282 ---------------------------------lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~ 328 (430)
T PRK00178 282 ---------------------------------VTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTF 328 (430)
T ss_pred ---------------------------------cccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeec
Confidence 111112233456666 4444443 333 5777888777643322
Q ss_pred eCCceEEEEEecCCcEEEeecCC-C--eEEEEeccccchhhhhccCcCCcceEEEEecCCCCeEEEeeCC---CcEEEEE
Q psy18231 415 VGEPIVDACFTRDCQCILTCSTD-E--CLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSD---GKIYKWQ 488 (540)
Q Consensus 415 ~~~~i~~~~~sp~~~~l~~~~~d-g--~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~s~~~~~l~s~s~d---g~i~iwd 488 (540)
.+.......|+|+|++++..+.+ + .|.++|+.+++.. .+.. ....... .|+|||++++..+.+ ..|++++
T Consensus 329 ~~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~-~lt~-~~~~~~p--~~spdg~~i~~~~~~~g~~~l~~~~ 404 (430)
T PRK00178 329 VGNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVR-ILTD-TSLDESP--SVAPNGTMLIYATRQQGRGVLMLVS 404 (430)
T ss_pred CCCCccceEECCCCCEEEEEEccCCceEEEEEECCCCCEE-EccC-CCCCCCc--eECCCCCEEEEEEecCCceEEEEEE
Confidence 23344567899999999877643 2 5888999877542 2221 1111223 799999998776644 3466777
Q ss_pred ecCCcceeEEEecccceeeeEEEEcCC
Q psy18231 489 LVDSSQISTLIHSVGKAVVNSLCSHPT 515 (540)
Q Consensus 489 ~~~~~~~~~~~~~~~~~~v~~l~~s~d 515 (540)
+ ++.....+. .+.+.+...+|+|-
T Consensus 405 ~-~g~~~~~l~--~~~g~~~~p~ws~~ 428 (430)
T PRK00178 405 I-NGRVRLPLP--TAQGEVREPSWSPY 428 (430)
T ss_pred C-CCCceEECc--CCCCCcCCCccCCC
Confidence 5 445445554 45566777888863
|
|
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.1e-10 Score=112.35 Aligned_cols=308 Identities=12% Similarity=0.113 Sum_probs=179.3
Q ss_pred CCCEEEEeeCCCcEEEEcCCCCeeEEEeecCCcceeEEEEeeCCCeEEEeeCCCeEEEEEcCCCceeEeccccCCceeE-
Q psy18231 175 DGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPVRRWREHASKVTC- 253 (540)
Q Consensus 175 dg~~lat~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~- 253 (540)
.+..+++++.+|.+..+|..+|+.+..+........... .++..++.++.++.+..+|..+|+.+....... .+.+
T Consensus 64 ~~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~--v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~-~~~~~ 140 (377)
T TIGR03300 64 AGGKVYAADADGTVVALDAETGKRLWRVDLDERLSGGVG--ADGGLVFVGTEKGEVIALDAEDGKELWRAKLSS-EVLSP 140 (377)
T ss_pred ECCEEEEECCCCeEEEEEccCCcEeeeecCCCCcccceE--EcCCEEEEEcCCCEEEEEECCCCcEeeeeccCc-eeecC
Confidence 356788888899999999999999887764332222222 256788889999999999999999887654322 2221
Q ss_pred EEECCCCCEEEEecCCCcEEEEEecCCCCCCcchhhhhHhhhhcCCceeEEEEeecccccccccCceeeEEEeeeecccc
Q psy18231 254 VKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLN 333 (540)
Q Consensus 254 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (540)
... .+..++.++.+|.|..||.++++..-...... ..... . .. ..... ..
T Consensus 141 p~v--~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~---------~~~~~---~---------~~-~sp~~------~~ 190 (377)
T TIGR03300 141 PLV--ANGLVVVRTNDGRLTALDAATGERLWTYSRVT---------PALTL---R---------GS-ASPVI------AD 190 (377)
T ss_pred CEE--ECCEEEEECCCCeEEEEEcCCCceeeEEccCC---------Cceee---c---------CC-CCCEE------EC
Confidence 111 34567777889999999998886311110000 00000 0 00 00000 00
Q ss_pred cceeeeeeccceeEEEeecccceeccccccccccc-chhhhhhcccccEEEEEecCCeeEeeeCCCeEEEEeCCCCceEE
Q psy18231 334 GLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHN-SCFQALKEARDSITSVHVSDHEILTASLDCRIRRYDIRTGNLVT 412 (540)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~v~~l~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 412 (540)
+ .......++.+...+.......|......... .....+.. ...+..+..+.+++++.+|.+..||.++++.+.
T Consensus 191 ~--~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~---~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~~W 265 (377)
T TIGR03300 191 G--GVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVD---VDGDPVVDGGQVYAVSYQGRVAALDLRSGRVLW 265 (377)
T ss_pred C--EEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhc---cCCccEEECCEEEEEEcCCEEEEEECCCCcEEE
Confidence 0 01112223445555544333333321100000 00000000 001112335778888899999999999998876
Q ss_pred eeeCCceEEEEEecCCcEEEeecCCCeEEEEeccccchhhhhccCcCC-cceEEEEecCCCCeEEEeeCCCcEEEEEecC
Q psy18231 413 DYVGEPIVDACFTRDCQCILTCSTDECLRLFDKATGELLEEYKGHKSG-DFRIECCLDSKDSQIFCGSSDGKIYKWQLVD 491 (540)
Q Consensus 413 ~~~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~-v~~~~~~~s~~~~~l~s~s~dg~i~iwd~~~ 491 (540)
........... .++..+++++.+|.+..+|..+++.+......... .... ...+..|++++.+|.|+++|..+
T Consensus 266 ~~~~~~~~~p~--~~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp----~i~g~~l~~~~~~G~l~~~d~~t 339 (377)
T TIGR03300 266 KRDASSYQGPA--VDDNRLYVTDADGVVVALDRRSGSELWKNDELKYRQLTAP----AVVGGYLVVGDFEGYLHWLSRED 339 (377)
T ss_pred eeccCCccCce--EeCCEEEEECCCCeEEEEECCCCcEEEccccccCCccccC----EEECCEEEEEeCCCEEEEEECCC
Confidence 66532222222 25667888889999999999999877555322111 1111 12466899999999999999999
Q ss_pred CcceeEEEecccceee-eEEEEcCCCcEEEeec-CCeeEEE
Q psy18231 492 SSQISTLIHSVGKAVV-NSLCSHPTRKHIMSAC-GNNVKLW 530 (540)
Q Consensus 492 ~~~~~~~~~~~~~~~v-~~l~~s~d~~~l~s~~-d~~i~iw 530 (540)
++.+.++. .+...+ .+.++. +++ |+.++ ||.|..+
T Consensus 340 G~~~~~~~--~~~~~~~~sp~~~-~~~-l~v~~~dG~l~~~ 376 (377)
T TIGR03300 340 GSFVARLK--TDGSGIASPPVVV-GDG-LLVQTRDGDLYAF 376 (377)
T ss_pred CCEEEEEE--cCCCccccCCEEE-CCE-EEEEeCCceEEEe
Confidence 99998887 444332 233333 444 55555 9998875
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.6e-11 Score=119.76 Aligned_cols=230 Identities=13% Similarity=0.139 Sum_probs=143.7
Q ss_pred cEEEEcCCCCeeEEEeecCCcceeEEEEeeCCCeEEEeeCC---CeEEEEEcCCCceeEeccccCCceeEEEECCCCCEE
Q psy18231 187 KIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASD---KSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVV 263 (540)
Q Consensus 187 ~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~d---g~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l 263 (540)
.|.++|..... .+.+..+...+.+..|+|||+.|+..+.+ ..|.+||+.+++... +....+......|+|||+.|
T Consensus 199 ~l~i~d~dG~~-~~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~-lt~~~g~~~~~~wSPDG~~L 276 (448)
T PRK04792 199 QLMIADYDGYN-EQMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK-VTSFPGINGAPRFSPDGKKL 276 (448)
T ss_pred EEEEEeCCCCC-ceEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ecCCCCCcCCeeECCCCCEE
Confidence 66777865443 34555567889999999999998876543 368899998876533 22223344578999999977
Q ss_pred EE-ecCCCc--EEEEEecCCCCCCcchhhhhHhhhhcCCceeEEEEeecccccccccCceeeEEEeeeecccccceeeee
Q psy18231 264 IS-GSQDNT--VMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVL 340 (540)
Q Consensus 264 ~s-~~~dg~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (540)
+. .+.+|. |.++|+.+++..
T Consensus 277 a~~~~~~g~~~Iy~~dl~tg~~~--------------------------------------------------------- 299 (448)
T PRK04792 277 ALVLSKDGQPEIYVVDIATKALT--------------------------------------------------------- 299 (448)
T ss_pred EEEEeCCCCeEEEEEECCCCCeE---------------------------------------------------------
Confidence 64 455665 666677655411
Q ss_pred eccceeEEEeecccceecccccccccccchhhhhhcccccEEEEEecC--CeeEeee-CCC--eEEEEeCCCCceEEe-e
Q psy18231 341 MSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEARDSITSVHVSD--HEILTAS-LDC--RIRRYDIRTGNLVTD-Y 414 (540)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~--~~l~~~~-~dg--~i~iwd~~~~~~~~~-~ 414 (540)
.+..+.......+|+| +.++..+ .++ .|.++|+.+++.... .
T Consensus 300 --------------------------------~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~ 347 (448)
T PRK04792 300 --------------------------------RITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLTF 347 (448)
T ss_pred --------------------------------ECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEec
Confidence 1111222334556776 4454443 333 567778877765432 2
Q ss_pred eCCceEEEEEecCCcEEEeecC-CC--eEEEEeccccchhhhhccCcCCcceEEEEecCCCCeEEEeeCC-C--cEEEEE
Q psy18231 415 VGEPIVDACFTRDCQCILTCST-DE--CLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSD-G--KIYKWQ 488 (540)
Q Consensus 415 ~~~~i~~~~~sp~~~~l~~~~~-dg--~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~s~~~~~l~s~s~d-g--~i~iwd 488 (540)
.+......+|+|||++|+..+. ++ .|.++|+.+++.. .+.... ..... .|+|||++|+..+.+ + .+++++
T Consensus 348 ~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~-~lt~~~-~d~~p--s~spdG~~I~~~~~~~g~~~l~~~~ 423 (448)
T PRK04792 348 EGEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQ-VLTSTR-LDESP--SVAPNGTMVIYSTTYQGKQVLAAVS 423 (448)
T ss_pred CCCCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeE-EccCCC-CCCCc--eECCCCCEEEEEEecCCceEEEEEE
Confidence 3344456799999999887655 33 4666788777542 222211 11122 799999987765543 3 367777
Q ss_pred ecCCcceeEEEecccceeeeEEEEcC
Q psy18231 489 LVDSSQISTLIHSVGKAVVNSLCSHP 514 (540)
Q Consensus 489 ~~~~~~~~~~~~~~~~~~v~~l~~s~ 514 (540)
. +++....+. .+.+.+...+|+|
T Consensus 424 ~-~G~~~~~l~--~~~g~~~~p~Wsp 446 (448)
T PRK04792 424 I-DGRFKARLP--AGQGEVKSPAWSP 446 (448)
T ss_pred C-CCCceEECc--CCCCCcCCCccCC
Confidence 5 677767676 4556678888987
|
|
| >KOG2041|consensus | Back alignment and domain information |
|---|
Probab=99.47 E-value=7.4e-12 Score=118.50 Aligned_cols=278 Identities=14% Similarity=0.157 Sum_probs=199.3
Q ss_pred cCeEEEEeCCCCCEEEEeeCCCcEEEEcCCCCe---------------eEEEeecCCcceeEEEEeeCCCeEEEeeCCCe
Q psy18231 165 SGLMHTRFPVDGSYCLTCGSDKKIKLWNPYRNL---------------LLKTYGGHAHEVNDATAACDSSQIASGASDKS 229 (540)
Q Consensus 165 ~~v~~v~~spdg~~lat~~~dg~i~iwd~~~~~---------------~~~~~~~h~~~v~~l~~sp~~~~l~s~s~dg~ 229 (540)
....|+.|+....++|.|+.||.+++..+.+.. .-.++.||.+.|.-+.|+.+.+.|-|...+|.
T Consensus 15 vkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~Gl 94 (1189)
T KOG2041|consen 15 VKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSGL 94 (1189)
T ss_pred ceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCCce
Confidence 456799999999999999999999999765431 22467899999999999999999999999999
Q ss_pred EEEEEcCCCceeEec--cccCCceeEEEECCCCCEEEEecCCCcEEEEEecCCCCCCcchhhhhHhhhhcCCceeEEEEe
Q psy18231 230 VILWEVTTGQPVRRW--REHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSL 307 (540)
Q Consensus 230 i~iwd~~~~~~~~~~--~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (540)
|.+|-+-.|+..... ....+.|.+++|+.||..+...-.||.|.+=.++.... .
T Consensus 95 IiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRI---w--------------------- 150 (1189)
T KOG2041|consen 95 IIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRI---W--------------------- 150 (1189)
T ss_pred EEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeecccee---c---------------------
Confidence 999999887654332 23467799999999999999999999988766655431 0
Q ss_pred ecccccccccCceeeEEEeeeecccccceeeeeeccceeEEEeecccceecccccccccccchhhhhhcccccEEEEEec
Q psy18231 308 VKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEARDSITSVHVS 387 (540)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~ 387 (540)
. +.++ ......+.|+
T Consensus 151 ----------------------------------------------------g-----------KeLk--g~~l~hv~ws 165 (1189)
T KOG2041|consen 151 ----------------------------------------------------G-----------KELK--GQLLAHVLWS 165 (1189)
T ss_pred ----------------------------------------------------c-----------hhcc--hheccceeec
Confidence 0 0010 1112356677
Q ss_pred C--CeeEeeeCCCeEEEEeCCCCc-------eEEeee------CCceEEEEEe--------cCCcEEEeecCCCeEEEEe
Q psy18231 388 D--HEILTASLDCRIRRYDIRTGN-------LVTDYV------GEPIVDACFT--------RDCQCILTCSTDECLRLFD 444 (540)
Q Consensus 388 ~--~~l~~~~~dg~i~iwd~~~~~-------~~~~~~------~~~i~~~~~s--------p~~~~l~~~~~dg~i~i~d 444 (540)
+ ..++.+-.+|.+.+||.+..- +.-... ++.|..+.|. ||...|+++..+|.+.|..
T Consensus 166 ~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR 245 (1189)
T KOG2041|consen 166 EDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMR 245 (1189)
T ss_pred ccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhh
Confidence 7 556666778889999876321 111111 2346666653 4778899999999888875
Q ss_pred ccccchhhhhccCcCCcceEEEEecCCCCeEEEeeCC---------CcEEEEEecCCcceeEEEecccceeeeEEEEcCC
Q psy18231 445 KATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSD---------GKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPT 515 (540)
Q Consensus 445 ~~~~~~~~~~~~~~~~v~~~~~~~s~~~~~l~s~s~d---------g~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d 515 (540)
-.+......+... ...+...|+++|..||.++.| +.|.+|. .-|+.+.+++ .....|++++|-..
T Consensus 246 ~eND~~Pvv~dtg---m~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fys-p~G~i~gtlk--vpg~~It~lsWEg~ 319 (1189)
T KOG2041|consen 246 SENDPEPVVVDTG---MKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYS-PYGHIVGTLK--VPGSCITGLSWEGT 319 (1189)
T ss_pred hcCCCCCeEEecc---cEeecceecCCCcEEEEccCcccccCccccceEEEec-cchhheEEEe--cCCceeeeeEEcCC
Confidence 5443322222211 223344899999999998854 2566665 5678888888 66778999999988
Q ss_pred CcEEEeecCCeeEEEEcccccC
Q psy18231 516 RKHIMSACGNNVKLWTAEEDYG 537 (540)
Q Consensus 516 ~~~l~s~~d~~i~iw~~~~~~~ 537 (540)
|-.++.+-|+.|.+=++..+|.
T Consensus 320 gLriA~AvdsfiyfanIRP~yk 341 (1189)
T KOG2041|consen 320 GLRIAIAVDSFIYFANIRPEYK 341 (1189)
T ss_pred ceEEEEEecceEEEEeecccce
Confidence 8888888888888887776653
|
|
| >KOG2314|consensus | Back alignment and domain information |
|---|
Probab=99.46 E-value=2.6e-11 Score=111.59 Aligned_cols=325 Identities=13% Similarity=0.186 Sum_probs=185.3
Q ss_pred eEEEEeCCCCCEEEEeeCCCcEEEEcCCCCeeEEEeecCCcceeEEEEeeCCCeEEEeeCC-----------CeEEEEEc
Q psy18231 167 LMHTRFPVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASD-----------KSVILWEV 235 (540)
Q Consensus 167 v~~v~~spdg~~lat~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~d-----------g~i~iwd~ 235 (540)
-+-+.|||-|.||+|--..| |.+|--++-..++.+. |. .|.-+.|||..+||+|-+.. ..++|||+
T Consensus 213 etyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~RF~-Hp-~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI 289 (698)
T KOG2314|consen 213 ETYVRWSPKGTYLVTFHKQG-IALWGGESFDRIQRFY-HP-GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDI 289 (698)
T ss_pred eeeEEecCCceEEEEEeccc-eeeecCccHHHHHhcc-CC-CceeeecCCccceEEEecCCccccCcccCCCceEEEEEc
Confidence 46789999999999987654 6699877777777775 44 47889999999999986542 57999999
Q ss_pred CCCceeEeccccCC--c-eeEEEECCCCCEEEEecCCCcEEEEEecCCCCCCcchhhhhHhhhhcCCceeEEEEeecccc
Q psy18231 236 TTGQPVRRWREHAS--K-VTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTK 312 (540)
Q Consensus 236 ~~~~~~~~~~~h~~--~-v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (540)
.+|...+.+....+ . -.-..||.|++++|--.. .+|.||+..+... .. .....+..+..+.+++.
T Consensus 290 ~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~-~sisIyEtpsf~l--ld---------~Kslki~gIr~FswsP~ 357 (698)
T KOG2314|consen 290 ATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTG-NSISIYETPSFML--LD---------KKSLKISGIRDFSWSPT 357 (698)
T ss_pred cccchhcceeccCCCccccceEEeccCCceeEEecc-ceEEEEecCceee--ec---------ccccCCccccCcccCCC
Confidence 99998887764222 2 234689999999998776 4688998765431 11 11111222222333332
Q ss_pred cccccCceeeEEEeeeecccccc--eeeeeeccceeEEEeecccceecccccccccccchhhhhh-cccccEEEEEecC-
Q psy18231 313 NHLSNGLLTKLVFAFRCKYLNGL--LSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALK-EARDSITSVHVSD- 388 (540)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~l~~~~- 388 (540)
..++..|.....+.. +........+.+....... +... .+. ..++.-.|+....
T Consensus 358 --------~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfn------VsDc--------kLhWQk~gdyLcvkvdR~ 415 (698)
T KOG2314|consen 358 --------SNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFN------VSDC--------KLHWQKSGDYLCVKVDRH 415 (698)
T ss_pred --------cceEEEEcccccCCcceEEEEecCccceeeecccee------eecc--------EEEeccCCcEEEEEEEee
Confidence 112222222211111 1111111111111111000 0000 000 0011222222222
Q ss_pred CeeEeeeCCCeEEEEeCCCCce-EEeee-CCceEEEEEecCCcEEEeecC---CCeEEEEeccc----cchhhhhccCcC
Q psy18231 389 HEILTASLDCRIRRYDIRTGNL-VTDYV-GEPIVDACFTRDCQCILTCST---DECLRLFDKAT----GELLEEYKGHKS 459 (540)
Q Consensus 389 ~~l~~~~~dg~i~iwd~~~~~~-~~~~~-~~~i~~~~~sp~~~~l~~~~~---dg~i~i~d~~~----~~~~~~~~~~~~ 459 (540)
...-+.+.-..+.|+.++.... +.... ...|...+|-|.|+.+++-+. ..++.+|-+++ .+.+..+..
T Consensus 416 tK~~~~g~f~n~eIfrireKdIpve~velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk--- 492 (698)
T KOG2314|consen 416 TKSKVKGQFSNLEIFRIREKDIPVEVVELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELDK--- 492 (698)
T ss_pred ccccccceEeeEEEEEeeccCCCceeeecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhcc---
Confidence 0000222223456666665443 22222 367899999999988776543 35788888763 234444443
Q ss_pred CcceEEEEecCCCCeEEEe---eCCCcEEEEEecCCcceeEEEecccceeeeEEEEcCCCcEEEeec-------CCeeEE
Q psy18231 460 GDFRIECCLDSKDSQIFCG---SSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC-------GNNVKL 529 (540)
Q Consensus 460 ~v~~~~~~~s~~~~~l~s~---s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~-------d~~i~i 529 (540)
..+-.+.|+|.|++++.+ |..|.+.++|........+-. ..| ...+.+.|.|.|+|+++++ |..-+|
T Consensus 493 -~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k~~~~-~eh-~~at~veWDPtGRYvvT~ss~wrhk~d~GYri 569 (698)
T KOG2314|consen 493 -KFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADLKDTAS-PEH-FAATEVEWDPTGRYVVTSSSSWRHKVDNGYRI 569 (698)
T ss_pred -cccceEEEcCCCcEEEEEEecccccceEEEecchhhhhhccC-ccc-cccccceECCCCCEEEEeeehhhhccccceEE
Confidence 223334899999998765 467899999976422222221 134 3467899999999999975 345677
Q ss_pred EEccc
Q psy18231 530 WTAEE 534 (540)
Q Consensus 530 w~~~~ 534 (540)
|++.+
T Consensus 570 ~tfqG 574 (698)
T KOG2314|consen 570 FTFQG 574 (698)
T ss_pred EEeec
Confidence 77654
|
|
| >KOG4547|consensus | Back alignment and domain information |
|---|
Probab=99.45 E-value=4.6e-12 Score=117.64 Aligned_cols=142 Identities=12% Similarity=0.211 Sum_probs=127.0
Q ss_pred CeeEeeeCCCeEEEEeCCCCceEEeeeC----CceEEEEEecCCcEEEeecCCCeEEEEeccccchhhhhccCcCCcceE
Q psy18231 389 HEILTASLDCRIRRYDIRTGNLVTDYVG----EPIVDACFTRDCQCILTCSTDECLRLFDKATGELLEEYKGHKSGDFRI 464 (540)
Q Consensus 389 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~----~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~ 464 (540)
..++-|...|.|.+|++..++....+.. +.|.++.++.+-..|.+++.|+.+..|+....+.++.++.....+..+
T Consensus 71 ~~lvlgt~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl 150 (541)
T KOG4547|consen 71 SMLVLGTPQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSL 150 (541)
T ss_pred eEEEeecCCccEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCccceE
Confidence 5688899999999999999999888873 579999999999999999999999999999999999999888888777
Q ss_pred EEEecCCCCeEEEeeCCCcEEEEEecCCcceeEEEecccceeeeEEEEcCC-----CcEEEeec--CCeeEEEEccccc
Q psy18231 465 ECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPT-----RKHIMSAC--GNNVKLWTAEEDY 536 (540)
Q Consensus 465 ~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d-----~~~l~s~~--d~~i~iw~~~~~~ 536 (540)
+++|||..+++++ +.|++||+++++.+.++. +|.++|+++.|..+ |.++.++. +..+.+|-++..-
T Consensus 151 --~is~D~~~l~~as--~~ik~~~~~~kevv~~ft--gh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~~~ 223 (541)
T KOG4547|consen 151 --CISPDGKILLTAS--RQIKVLDIETKEVVITFT--GHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEKED 223 (541)
T ss_pred --EEcCCCCEEEecc--ceEEEEEccCceEEEEec--CCCcceEEEEEEEeccccccceeeeccccccceeEEEEEccc
Confidence 8999999999997 579999999999999999 99999999999877 77777766 7788999887643
|
|
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=99.45 E-value=6.4e-10 Score=105.04 Aligned_cols=263 Identities=11% Similarity=0.138 Sum_probs=162.6
Q ss_pred ecCeEEEEeCCCCCEEEEeeC----CCcEEEEcCCCC----eeEEEeecCCcceeEEEEeeCCCeEEEeeC-CCeEEEEE
Q psy18231 164 LSGLMHTRFPVDGSYCLTCGS----DKKIKLWNPYRN----LLLKTYGGHAHEVNDATAACDSSQIASGAS-DKSVILWE 234 (540)
Q Consensus 164 ~~~v~~v~~spdg~~lat~~~----dg~i~iwd~~~~----~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~-dg~i~iwd 234 (540)
......++++|++++|.+... ++.|..|++... +.+.+..........++++|++++|+++.. +|+|.+++
T Consensus 36 ~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~ 115 (345)
T PF10282_consen 36 GENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFP 115 (345)
T ss_dssp SSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred CCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEE
Confidence 345678899999999998866 578999887654 233344433455567999999999998874 89999999
Q ss_pred cCC-CceeEe---cc----------ccCCceeEEEECCCCCEEEEecC-CCcEEEEEecCCCCCCcchhhhhHhhhhcCC
Q psy18231 235 VTT-GQPVRR---WR----------EHASKVTCVKFNEDSSVVISGSQ-DNTVMMWDVKSRSHHPIQVRCLNEALKEARD 299 (540)
Q Consensus 235 ~~~-~~~~~~---~~----------~h~~~v~~~~~~~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 299 (540)
+.. |..... +. .......++.|+|+++++++... ...|.+|++...... +.
T Consensus 116 l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~-l~------------- 181 (345)
T PF10282_consen 116 LDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGK-LT------------- 181 (345)
T ss_dssp ECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-T-EE-------------
T ss_pred ccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCce-EE-------------
Confidence 987 432222 11 12356789999999998887643 347999998765410 00
Q ss_pred ceeEEEEeecccccccccCceeeEEEeeeecccccceeeeeeccceeEEEeecccceecccccccccccchhhhhhcccc
Q psy18231 300 SITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEARD 379 (540)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (540)
... . .......
T Consensus 182 ---~~~----------------------------------------------------------------~--~~~~~G~ 192 (345)
T PF10282_consen 182 ---PVD----------------------------------------------------------------S--IKVPPGS 192 (345)
T ss_dssp ---EEE----------------------------------------------------------------E--EECSTTS
T ss_pred ---Eee----------------------------------------------------------------c--cccccCC
Confidence 000 0 0012234
Q ss_pred cEEEEEecC--Cee-EeeeCCCeEEEEeCC--CCce--EEeeeC--------CceEEEEEecCCcEEEeecC-CCeEEEE
Q psy18231 380 SITSVHVSD--HEI-LTASLDCRIRRYDIR--TGNL--VTDYVG--------EPIVDACFTRDCQCILTCST-DECLRLF 443 (540)
Q Consensus 380 ~v~~l~~~~--~~l-~~~~~dg~i~iwd~~--~~~~--~~~~~~--------~~i~~~~~sp~~~~l~~~~~-dg~i~i~ 443 (540)
....+.|+| +++ ++...++.|.++++. ++.. +..+.. .....+.++|||++|+++.. ++.|.+|
T Consensus 193 GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf 272 (345)
T PF10282_consen 193 GPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVF 272 (345)
T ss_dssp SEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEE
T ss_pred CCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEE
Confidence 567888888 444 455668889999888 4422 222221 25788999999999888664 6789999
Q ss_pred ecc--ccch--hhhhccCcCCcceEEEEecCCCCeEEEee-CCCcEEEEEec--CCcceeEEEecccceeeeEEEE
Q psy18231 444 DKA--TGEL--LEEYKGHKSGDFRIECCLDSKDSQIFCGS-SDGKIYKWQLV--DSSQISTLIHSVGKAVVNSLCS 512 (540)
Q Consensus 444 d~~--~~~~--~~~~~~~~~~v~~~~~~~s~~~~~l~s~s-~dg~i~iwd~~--~~~~~~~~~~~~~~~~v~~l~~ 512 (540)
++. +++. +..+..... .--.++++|+|++|+++. .++.|.+|++. +|.+...-.. ..-....||.|
T Consensus 273 ~~d~~~g~l~~~~~~~~~G~--~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~tG~l~~~~~~-~~~~~p~ci~f 345 (345)
T PF10282_consen 273 DLDPATGTLTLVQTVPTGGK--FPRHFAFSPDGRYLYVANQDSNTVSVFDIDPDTGKLTPVGSS-VPIPSPVCIVF 345 (345)
T ss_dssp EECTTTTTEEEEEEEEESSS--SEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEE-EESSSEEEEEE
T ss_pred EEecCCCceEEEEEEeCCCC--CccEEEEeCCCCEEEEEecCCCeEEEEEEeCCCCcEEEeccc-ccCCCCEEEeC
Confidence 983 2322 222222112 223448999999988776 66789999874 5554333221 22334556655
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >KOG0974|consensus | Back alignment and domain information |
|---|
Probab=99.45 E-value=3.1e-12 Score=126.29 Aligned_cols=195 Identities=15% Similarity=0.198 Sum_probs=156.9
Q ss_pred cCeEEEEeCCCCCEEEEeeCCCcEEEEcCCCCeeEEEeecCCcce----eEEEEeeCCCeEEEeeCCCeEEEEEcCCCce
Q psy18231 165 SGLMHTRFPVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEV----NDATAACDSSQIASGASDKSVILWEVTTGQP 240 (540)
Q Consensus 165 ~~v~~v~~spdg~~lat~~~dg~i~iwd~~~~~~~~~~~~h~~~v----~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~ 240 (540)
+.|....+.-+.+.++.+..+..+.+||...+.....+....... .-+.++++.-++++|+.-+.|.+|+....+.
T Consensus 88 ~wi~g~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~ 167 (967)
T KOG0974|consen 88 DWIFGAKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDNK 167 (967)
T ss_pred ccccccchhhhcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccCC
Confidence 344445566677788988889999999998887776665322211 1234566777899999999999999975444
Q ss_pred eEeccccCCceeEEEECCCCCEEEEecCCCcEEEEEecCCCCCCcchhhhhHhhhhcCCceeEEEEeecccccccccCce
Q psy18231 241 VRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHLSNGLL 320 (540)
Q Consensus 241 ~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (540)
...+.+|.+.|..+.|+.||.++++.|+|.++++|++++.+...
T Consensus 168 p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~------------------------------------ 211 (967)
T KOG0974|consen 168 PIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLG------------------------------------ 211 (967)
T ss_pred cceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccC------------------------------------
Confidence 44688999999999999999999999999999999999887311
Q ss_pred eeEEEeeeecccccceeeeeeccceeEEEeecccceecccccccccccchhhhhhcccccEEEEEecCCeeEeeeCCCeE
Q psy18231 321 TKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEARDSITSVHVSDHEILTASLDCRI 400 (540)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~dg~i 400 (540)
...-+|...|..+.+.|+.+++++.|-+.
T Consensus 212 ---------------------------------------------------~~~fgHsaRvw~~~~~~n~i~t~gedctc 240 (967)
T KOG0974|consen 212 ---------------------------------------------------CTGFGHSARVWACCFLPNRIITVGEDCTC 240 (967)
T ss_pred ---------------------------------------------------cccccccceeEEEEeccceeEEeccceEE
Confidence 14458999999999999999999999999
Q ss_pred EEEeCCCCceEEeeeC---CceEEEEEecCCcEEEeecCCCeEEEEeccc
Q psy18231 401 RRYDIRTGNLVTDYVG---EPIVDACFTRDCQCILTCSTDECLRLFDKAT 447 (540)
Q Consensus 401 ~iwd~~~~~~~~~~~~---~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~ 447 (540)
++|+.+ ++.+..+.+ ..|..++..++...+++++.|+.+++||+..
T Consensus 241 rvW~~~-~~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~ 289 (967)
T KOG0974|consen 241 RVWGVN-GTQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNG 289 (967)
T ss_pred EEEecc-cceehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhc
Confidence 999765 444445654 5799999999999999999999999998743
|
|
| >KOG0280|consensus | Back alignment and domain information |
|---|
Probab=99.44 E-value=4.7e-11 Score=101.34 Aligned_cols=264 Identities=14% Similarity=0.126 Sum_probs=172.2
Q ss_pred CCcEEEEcCCCCeeEE--Ee-ecCCcceeEEEEee---CCC-eEEEeeCCCeEEEEEcCCCceeEecccc------CCce
Q psy18231 185 DKKIKLWNPYRNLLLK--TY-GGHAHEVNDATAAC---DSS-QIASGASDKSVILWEVTTGQPVRRWREH------ASKV 251 (540)
Q Consensus 185 dg~i~iwd~~~~~~~~--~~-~~h~~~v~~l~~sp---~~~-~l~s~s~dg~i~iwd~~~~~~~~~~~~h------~~~v 251 (540)
.|.+.+|++...+... ++ ...+..+..+.|.. +|. .++-+-.+|.|.++..........+++- ....
T Consensus 45 ~Gkl~Lys~~d~~~~~l~~~q~~dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~ 124 (339)
T KOG0280|consen 45 SGKLHLYSLEDMKLSPLDTLQCTDTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEA 124 (339)
T ss_pred ccceEEEeecccccCccceeeeecccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhheee
Confidence 4566677766544332 11 12344556666654 444 4666777889999877554433333321 1124
Q ss_pred eEEEECCCCCEEEEecCCCcEEEEEecCCCCCCcchhhhhHhhhhcCCceeEEEEeecccccccccCceeeEEEeeeecc
Q psy18231 252 TCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKY 331 (540)
Q Consensus 252 ~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (540)
.++.|++.+..++++-.+|.+.+-+.......
T Consensus 125 lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le------------------------------------------------ 156 (339)
T KOG0280|consen 125 LSLDISTSGTKIFVSDSRGSISGVYETEMVLE------------------------------------------------ 156 (339)
T ss_pred eEEEeeccCceEEEEcCCCcEEEEecceeeee------------------------------------------------
Confidence 57888888888999888898885544333211
Q ss_pred cccceeeeeeccceeEEEeecccceecccccccccccchhhhhhcccccEEEEEecC---CeeEeeeCCCeEEEEeCCCC
Q psy18231 332 LNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEARDSITSVHVSD---HEILTASLDCRIRRYDIRTG 408 (540)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~---~~l~~~~~dg~i~iwd~~~~ 408 (540)
..+.++.|...+....|+. +.+.+|+.|+.+..||++..
T Consensus 157 --------------------------------------~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p 198 (339)
T KOG0280|consen 157 --------------------------------------KVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIP 198 (339)
T ss_pred --------------------------------------ecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCC
Confidence 1226678888888888864 88999999999999999933
Q ss_pred -ceEEe---eeCCceEEEEEec-CCcEEEeecCCCeEEEEeccc-cchhhhhccCcCCcceEEEEecCC--CCeEEEeeC
Q psy18231 409 -NLVTD---YVGEPIVDACFTR-DCQCILTCSTDECLRLFDKAT-GELLEEYKGHKSGDFRIECCLDSK--DSQIFCGSS 480 (540)
Q Consensus 409 -~~~~~---~~~~~i~~~~~sp-~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~v~~~~~~~s~~--~~~l~s~s~ 480 (540)
+.+.. .+...|.++.-+| .+.++++|+.|..|++||.++ ++++..-.. .+.|+.+ ..+|. +..|+++-.
T Consensus 199 ~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~v-~GGVWRi--~~~p~~~~~lL~~CMh 275 (339)
T KOG0280|consen 199 KTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAKV-GGGVWRI--KHHPEIFHRLLAACMH 275 (339)
T ss_pred cceeeecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccCcc-ccceEEE--EecchhhhHHHHHHHh
Confidence 33322 2335788887776 678999999999999999984 566544332 3668877 56664 334666655
Q ss_pred CCcEEEEEecCCccee--EE-EecccceeeeEEEEcCCCcEEEeec--CCeeE-EEEcccccCC
Q psy18231 481 DGKIYKWQLVDSSQIS--TL-IHSVGKAVVNSLCSHPTRKHIMSAC--GNNVK-LWTAEEDYGQ 538 (540)
Q Consensus 481 dg~i~iwd~~~~~~~~--~~-~~~~~~~~v~~l~~s~d~~~l~s~~--d~~i~-iw~~~~~~~~ 538 (540)
+| .+|-+.+++.... .+ ....|.+-+..-.|.....+|+|++ |+.++ +|-.-+++.+
T Consensus 276 ~G-~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATCsFYDk~~~~~Wl~~t~~~t 338 (339)
T KOG0280|consen 276 NG-AKILDSSDKVLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATCSFYDKKIRQLWLHITGEPT 338 (339)
T ss_pred cC-ceEEEecccccchheeeeccccccceeeccccccccceeeeeeccccceeeeeeeccCCcC
Confidence 55 6777776553321 11 1226777777777755567899988 99866 9987776654
|
|
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=99.43 E-value=2.4e-11 Score=119.07 Aligned_cols=216 Identities=14% Similarity=0.056 Sum_probs=137.2
Q ss_pred eeeeeccccc--ceeeeeecCeEEEEeCCCCCEEEEeeCC---CcEEEEcCCCCeeEEEeecCCcceeEEEEeeCCCeEE
Q psy18231 148 SIRVYRPLTV--NRELFVLSGLMHTRFPVDGSYCLTCGSD---KKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIA 222 (540)
Q Consensus 148 ~i~~~~~~~~--~~~~~h~~~v~~v~~spdg~~lat~~~d---g~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~ 222 (540)
.|.+++.... .....+...+.+.+|+|||++|+.+..+ ..|.+||+.+++... +..+.+.+.+++|+||++.|+
T Consensus 171 ~l~~~d~~g~~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~-~~~~~~~~~~~~~spDg~~l~ 249 (417)
T TIGR02800 171 ELQVADYDGANPQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREK-VASFPGMNGAPAFSPDGSKLA 249 (417)
T ss_pred eEEEEcCCCCCCEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCEEE
Confidence 4555555332 2333455678999999999999976643 479999998876543 334566677899999999776
Q ss_pred E-eeCCC--eEEEEEcCCCceeEeccccCCceeEEEECCCCCEEEEecC-CC--cEEEEEecCCCCCCcchhhhhHhhhh
Q psy18231 223 S-GASDK--SVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQ-DN--TVMMWDVKSRSHHPIQVRCLNEALKE 296 (540)
Q Consensus 223 s-~s~dg--~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~-dg--~i~iwd~~~~~~~~~~~~~~~~~~~~ 296 (540)
. .+.++ .|.+||+.+++.. .+..+........|+||++.|+..+. ++ .|.++|+.+++..
T Consensus 250 ~~~~~~~~~~i~~~d~~~~~~~-~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~------------- 315 (417)
T TIGR02800 250 VSLSKDGNPDIYVMDLDGKQLT-RLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVR------------- 315 (417)
T ss_pred EEECCCCCccEEEEECCCCCEE-ECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEE-------------
Confidence 4 44444 5888998877643 34445555567899999998876554 33 4666665544310
Q ss_pred cCCceeEEEEeecccccccccCceeeEEEeeeecccccceeeeeeccceeEEEeecccceecccccccccccchhhhhhc
Q psy18231 297 ARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKE 376 (540)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (540)
.+..
T Consensus 316 ----------------------------------------------------------------------------~l~~ 319 (417)
T TIGR02800 316 ----------------------------------------------------------------------------RLTF 319 (417)
T ss_pred ----------------------------------------------------------------------------Eeec
Confidence 0111
Q ss_pred ccccEEEEEecC--CeeEeeeCCC---eEEEEeCCCCceEEeeeCCceEEEEEecCCcEEEeecCCC---eEEEEecccc
Q psy18231 377 ARDSITSVHVSD--HEILTASLDC---RIRRYDIRTGNLVTDYVGEPIVDACFTRDCQCILTCSTDE---CLRLFDKATG 448 (540)
Q Consensus 377 ~~~~v~~l~~~~--~~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg---~i~i~d~~~~ 448 (540)
+........|+| +.++.++.++ .|.+||+.++...............|+|+|+.|+..+.++ .+++.+. ++
T Consensus 320 ~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~-~g 398 (417)
T TIGR02800 320 RGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGERVLTDTGLDESPSFAPNGRMILYATTRGGRGVLGLVST-DG 398 (417)
T ss_pred CCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeEEccCCCCCCCceECCCCCEEEEEEeCCCcEEEEEEEC-CC
Confidence 122344566776 6677766665 7899999876543322233345568999999888877654 3555553 34
Q ss_pred chhhhhc
Q psy18231 449 ELLEEYK 455 (540)
Q Consensus 449 ~~~~~~~ 455 (540)
+....+.
T Consensus 399 ~~~~~~~ 405 (417)
T TIGR02800 399 RFRARLP 405 (417)
T ss_pred ceeeECC
Confidence 3333343
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >KOG1064|consensus | Back alignment and domain information |
|---|
Probab=99.42 E-value=2e-12 Score=133.84 Aligned_cols=220 Identities=18% Similarity=0.226 Sum_probs=169.9
Q ss_pred CEEEEeeCCCcEEEEcCCCCeeEEEeecCCcceeEEEEeeCCCeEEEeeCCCeEEEEEcCCCceeEecc-ccCCceeEEE
Q psy18231 177 SYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPVRRWR-EHASKVTCVK 255 (540)
Q Consensus 177 ~~lat~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~h~~~v~~~~ 255 (540)
+.......++...-|..+-+.. .++.+-..|.++.-+|...+.+||+.||.|++|....++.+..++ .-...|+.+.
T Consensus 2181 ~~~~~~n~~~~~~tq~~~~~~~--~~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~ 2258 (2439)
T KOG1064|consen 2181 NRFTPSNLPWLGSTQTSRGASV--MIKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSR 2258 (2439)
T ss_pred ccCCcccCCccccceeccccee--EeecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhh
Confidence 3333344455555555433322 234466788889999999999999999999999999998887765 2338899999
Q ss_pred ECCCCCEEEEecCCCcEEEEEecCCCCCCcchhhhhHhhhhcCCceeEEEEeecccccccccCceeeEEEeeeecccccc
Q psy18231 256 FNEDSSVVISGSQDNTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGL 335 (540)
Q Consensus 256 ~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (540)
|+.+|+.+..+..||.+.+|..... +
T Consensus 2259 f~~qGnk~~i~d~dg~l~l~q~~pk---~--------------------------------------------------- 2284 (2439)
T KOG1064|consen 2259 FNHQGNKFGIVDGDGDLSLWQASPK---P--------------------------------------------------- 2284 (2439)
T ss_pred hcccCCceeeeccCCceeecccCCc---c---------------------------------------------------
Confidence 9999999999999999999987621 1
Q ss_pred eeeeeeccceeEEEeecccceecccccccccccchhhhhhcccccEEEEEecCCeeEeee---CCCeEEEEeCCCC---c
Q psy18231 336 LSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEARDSITSVHVSDHEILTAS---LDCRIRRYDIRTG---N 409 (540)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~---~dg~i~iwd~~~~---~ 409 (540)
....+.|......+.|-...+++++ .++.+.+||.... .
T Consensus 2285 -----------------------------------~~s~qchnk~~~Df~Fi~s~~~tag~s~d~~n~~lwDtl~~~~~s 2329 (2439)
T KOG1064|consen 2285 -----------------------------------YTSWQCHNKALSDFRFIGSLLATAGRSSDNRNVCLWDTLLPPMNS 2329 (2439)
T ss_pred -----------------------------------eeccccCCccccceeeeehhhhccccCCCCCcccchhcccCcccc
Confidence 1134456666667777666666654 5788999997643 3
Q ss_pred eEEeeeCCceEEEEEecCCcEEEeecCCCeEEEEeccccchhhhhccCcCCcceEEEEecCCCCeEEEeeCCCcEEEEEe
Q psy18231 410 LVTDYVGEPIVDACFTRDCQCILTCSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQL 489 (540)
Q Consensus 410 ~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~s~~~~~l~s~s~dg~i~iwd~ 489 (540)
++.+.+.+.++++++.|..++|++|+.+|.|++||++..+.+++++. +. ...++++|+..|.++||++
T Consensus 2330 ~v~~~H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrql~h~~~~-----------~~-~~~~f~~~ss~g~ikIw~~ 2397 (2439)
T KOG1064|consen 2330 LVHTCHDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLRHTFQA-----------LD-TREYFVTGSSEGNIKIWRL 2397 (2439)
T ss_pred eeeeecCCCceEEEEcCcceEEEecCCcCcEEEeehHHHHHHHHhhh-----------hh-hhheeeccCcccceEEEEc
Confidence 45666778999999999999999999999999999999998888875 22 4568999999999999999
Q ss_pred cCCcceeEEE
Q psy18231 490 VDSSQISTLI 499 (540)
Q Consensus 490 ~~~~~~~~~~ 499 (540)
.....+.++.
T Consensus 2398 s~~~ll~~~p 2407 (2439)
T KOG1064|consen 2398 SEFGLLHTFP 2407 (2439)
T ss_pred cccchhhcCc
Confidence 8887777775
|
|
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=5.9e-11 Score=116.37 Aligned_cols=132 Identities=13% Similarity=0.066 Sum_probs=89.5
Q ss_pred eeeeecccccc--eeeeeecCeEEEEeCCCCCEEEEeeCC---CcEEEEcCCCCeeEEEeecCCcceeEEEEeeCCCeEE
Q psy18231 148 SIRVYRPLTVN--RELFVLSGLMHTRFPVDGSYCLTCGSD---KKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIA 222 (540)
Q Consensus 148 ~i~~~~~~~~~--~~~~h~~~v~~v~~spdg~~lat~~~d---g~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~ 222 (540)
.|.+++..... ....+...+...+|||||+.|+..+.+ ..|.+||+.+++... +....+.+....|+|||+.|+
T Consensus 180 ~l~~~d~~g~~~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~-l~~~~g~~~~~~~SpDG~~la 258 (430)
T PRK00178 180 TLQRSDYDGARAVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ-ITNFEGLNGAPAWSPDGSKLA 258 (430)
T ss_pred EEEEECCCCCCceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE-ccCCCCCcCCeEECCCCCEEE
Confidence 35555544332 234566788999999999999876543 468999998886543 333445566789999999887
Q ss_pred -EeeCCC--eEEEEEcCCCceeEeccccCCceeEEEECCCCCEEEEecC-CC--cEEEEEecCCC
Q psy18231 223 -SGASDK--SVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQ-DN--TVMMWDVKSRS 281 (540)
Q Consensus 223 -s~s~dg--~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~-dg--~i~iwd~~~~~ 281 (540)
+.+.+| .|.+||+.+++.. .+..+........|+|||+.|+..+. +| .|.++++.+++
T Consensus 259 ~~~~~~g~~~Iy~~d~~~~~~~-~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~ 322 (430)
T PRK00178 259 FVLSKDGNPEIYVMDLASRQLS-RVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGR 322 (430)
T ss_pred EEEccCCCceEEEEECCCCCeE-EcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCC
Confidence 444454 6888899887654 35555666677899999988776553 34 45566665544
|
|
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.3e-09 Score=96.08 Aligned_cols=276 Identities=12% Similarity=0.193 Sum_probs=175.1
Q ss_pred CCcEEEEcCCCCee-E--EEeecCCcceeEEEEeeCCCeEEEeeCC---CeEEEEEcCC--CceeE--eccccCCceeEE
Q psy18231 185 DKKIKLWNPYRNLL-L--KTYGGHAHEVNDATAACDSSQIASGASD---KSVILWEVTT--GQPVR--RWREHASKVTCV 254 (540)
Q Consensus 185 dg~i~iwd~~~~~~-~--~~~~~h~~~v~~l~~sp~~~~l~s~s~d---g~i~iwd~~~--~~~~~--~~~~h~~~v~~~ 254 (540)
+.-|.+|++.+..- + ..+-.+.+..+-++|+|++++|.++..+ |.|.-|.+.. |+... .......+-..+
T Consensus 15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yv 94 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYV 94 (346)
T ss_pred CCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEE
Confidence 56799999873321 1 1123467788999999999999888654 6787777764 44322 222223444889
Q ss_pred EECCCCCEEEEecC-CCcEEEEEecCC-CCCCcchhhhhHhhhhcCCceeEEEEeecccccccccCceeeEEEeeeeccc
Q psy18231 255 KFNEDSSVVISGSQ-DNTVMMWDVKSR-SHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYL 332 (540)
Q Consensus 255 ~~~~~~~~l~s~~~-dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (540)
++++++++++++.. -|.|.++-+... ...... .. +
T Consensus 95 svd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v-~~--------------~---------------------------- 131 (346)
T COG2706 95 SVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVV-QV--------------V---------------------------- 131 (346)
T ss_pred EECCCCCEEEEEEccCceEEEEEcccCCccccce-ee--------------e----------------------------
Confidence 99999999998865 478999988653 211100 00 0
Q ss_pred ccceeeeeeccceeEEEeecccceecccccccccccchhhhhhcccccEEEEEecC--CeeEeeeC-CCeEEEEeCCCCc
Q psy18231 333 NGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEARDSITSVHVSD--HEILTASL-DCRIRRYDIRTGN 409 (540)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~--~~l~~~~~-dg~i~iwd~~~~~ 409 (540)
...+... .......-+....+.| +++++... --.|.+|++..++
T Consensus 132 --------------------------------~h~g~~p-~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~ 178 (346)
T COG2706 132 --------------------------------KHTGSGP-HERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGK 178 (346)
T ss_pred --------------------------------ecCCCCC-CccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCc
Confidence 0000000 0000112256677778 56666543 3468999999776
Q ss_pred eEEee-----eCCceEEEEEecCCcEEEeecC-CCeEEEEecccc-chhhhhc-------cCcCCcceEEEEecCCCCeE
Q psy18231 410 LVTDY-----VGEPIVDACFTRDCQCILTCST-DECLRLFDKATG-ELLEEYK-------GHKSGDFRIECCLDSKDSQI 475 (540)
Q Consensus 410 ~~~~~-----~~~~i~~~~~sp~~~~l~~~~~-dg~i~i~d~~~~-~~~~~~~-------~~~~~v~~~~~~~s~~~~~l 475 (540)
+...- .+..-..+.|+|++++..+.++ +++|.+|..... ..+..++ .-.+..+..++..++||++|
T Consensus 179 L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFL 258 (346)
T COG2706 179 LTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFL 258 (346)
T ss_pred cccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEE
Confidence 53222 2467889999999999887765 899999988763 1122221 12334455566899999999
Q ss_pred EEeeC-CCcEEEEEecCC-cceeEE-EecccceeeeEEEEcCCCcEEEeec--CCeeEEEEccccc
Q psy18231 476 FCGSS-DGKIYKWQLVDS-SQISTL-IHSVGKAVVNSLCSHPTRKHIMSAC--GNNVKLWTAEEDY 536 (540)
Q Consensus 476 ~s~s~-dg~i~iwd~~~~-~~~~~~-~~~~~~~~v~~l~~s~d~~~l~s~~--d~~i~iw~~~~~~ 536 (540)
+++.. ...|.+|.+... ..+... ..+.+....+.+.|+|+|++|+++. +..|.+|..+..-
T Consensus 259 YasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~T 324 (346)
T COG2706 259 YASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERDKET 324 (346)
T ss_pred EEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcCCC
Confidence 98753 347888887643 223322 2224445588999999999999998 5689999887653
|
|
| >KOG0280|consensus | Back alignment and domain information |
|---|
Probab=99.39 E-value=5.3e-11 Score=101.01 Aligned_cols=240 Identities=21% Similarity=0.249 Sum_probs=162.9
Q ss_pred ecCeEEEEeCC---CCC-EEEEeeCCCcEEEEcCCCCeeEEEeecCC------cceeEEEEeeCCCeEEEeeCCCeEEEE
Q psy18231 164 LSGLMHTRFPV---DGS-YCLTCGSDKKIKLWNPYRNLLLKTYGGHA------HEVNDATAACDSSQIASGASDKSVILW 233 (540)
Q Consensus 164 ~~~v~~v~~sp---dg~-~lat~~~dg~i~iwd~~~~~~~~~~~~h~------~~v~~l~~sp~~~~l~s~s~dg~i~iw 233 (540)
+..+..+.|.- +|. .|+-+..+|.|.++.....+....+.+-. ....++.|++.+..++++-.+|.+.+-
T Consensus 69 ts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~lslD~~~~~~~i~vs~s~G~~~~v 148 (339)
T KOG0280|consen 69 TSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEALSLDISTSGTKIFVSDSRGSISGV 148 (339)
T ss_pred ccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhheeeeEEEeeccCceEEEEcCCCcEEEE
Confidence 45566666653 555 45667778999999866554444443211 124578899999999999999999866
Q ss_pred EcCCCce--eEeccccCCceeEEEECC-CCCEEEEecCCCcEEEEEecCCCCCCcchhhhhHhhhhcCCceeEEEEeecc
Q psy18231 234 EVTTGQP--VRRWREHASKVTCVKFNE-DSSVVISGSQDNTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKS 310 (540)
Q Consensus 234 d~~~~~~--~~~~~~h~~~v~~~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (540)
+...... ++..+.|.-+.+...|+. +.+.+.+||.|+.+..||++..+...
T Consensus 149 ~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i-------------------------- 202 (339)
T KOG0280|consen 149 YETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFI-------------------------- 202 (339)
T ss_pred ecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCccee--------------------------
Confidence 6555433 347889999999999977 55799999999999999998443100
Q ss_pred cccccccCceeeEEEeeeecccccceeeeeeccceeEEEeecccceecccccccccccchhhhhhcccccEEEEEecC--
Q psy18231 311 TKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEARDSITSVHVSD-- 388 (540)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~-- 388 (540)
.+..+-|...|.+|.-+|
T Consensus 203 ------------------------------------------------------------~~n~kvH~~GV~SI~ss~~~ 222 (339)
T KOG0280|consen 203 ------------------------------------------------------------WHNSKVHTSGVVSIYSSPPK 222 (339)
T ss_pred ------------------------------------------------------------eecceeeecceEEEecCCCC
Confidence 113446788899998887
Q ss_pred -CeeEeeeCCCeEEEEeCC-CCceEEeee-CCceEEEEEecC--CcEEEeecCCCeEEEEeccccc-----hhhhhccCc
Q psy18231 389 -HEILTASLDCRIRRYDIR-TGNLVTDYV-GEPIVDACFTRD--CQCILTCSTDECLRLFDKATGE-----LLEEYKGHK 458 (540)
Q Consensus 389 -~~l~~~~~dg~i~iwd~~-~~~~~~~~~-~~~i~~~~~sp~--~~~l~~~~~dg~i~i~d~~~~~-----~~~~~~~~~ 458 (540)
.++++|+.|-.|++||.+ -++++..-. ++.|..+..+|. +++|+++-.+| .+|.+...+. .....+.|.
T Consensus 223 ~~~I~TGsYDe~i~~~DtRnm~kPl~~~~v~GGVWRi~~~p~~~~~lL~~CMh~G-~ki~~~~~~~~e~~~~~~s~~~hd 301 (339)
T KOG0280|consen 223 PTYIATGSYDECIRVLDTRNMGKPLFKAKVGGGVWRIKHHPEIFHRLLAACMHNG-AKILDSSDKVLEFQIVLPSDKIHD 301 (339)
T ss_pred CceEEEeccccceeeeehhcccCccccCccccceEEEEecchhhhHHHHHHHhcC-ceEEEecccccchheeeecccccc
Confidence 699999999999999999 456665544 478999999994 33444444444 6777765542 234445565
Q ss_pred CCcceEEEEecCCCCeEEEee-CCCcEE-EEEecCC
Q psy18231 459 SGDFRIECCLDSKDSQIFCGS-SDGKIY-KWQLVDS 492 (540)
Q Consensus 459 ~~v~~~~~~~s~~~~~l~s~s-~dg~i~-iwd~~~~ 492 (540)
+-.+.- .|.....+||+++ .|+.++ +|-.-++
T Consensus 302 Sl~YG~--DWd~~~~~lATCsFYDk~~~~~Wl~~t~ 335 (339)
T KOG0280|consen 302 SLCYGG--DWDSKDSFLATCSFYDKKIRQLWLHITG 335 (339)
T ss_pred ceeecc--ccccccceeeeeeccccceeeeeeeccC
Confidence 543333 3333345688765 566644 6654444
|
|
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=6.5e-11 Score=115.46 Aligned_cols=132 Identities=15% Similarity=0.095 Sum_probs=86.5
Q ss_pred eeeeecccccc--eeeeeecCeEEEEeCCCCCEEEEeeC-C--CcEEEEcCCCCeeEEEeecCCcceeEEEEeeCCCeEE
Q psy18231 148 SIRVYRPLTVN--RELFVLSGLMHTRFPVDGSYCLTCGS-D--KKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIA 222 (540)
Q Consensus 148 ~i~~~~~~~~~--~~~~h~~~v~~v~~spdg~~lat~~~-d--g~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~ 222 (540)
.|.+++....+ ....+...+.+..|||||++|+..+. + ..|.+||+.+++... +....+.....+|+|||+.|+
T Consensus 199 ~l~i~d~dG~~~~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~-lt~~~g~~~~~~wSPDG~~La 277 (448)
T PRK04792 199 QLMIADYDGYNEQMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK-VTSFPGINGAPRFSPDGKKLA 277 (448)
T ss_pred EEEEEeCCCCCceEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ecCCCCCcCCeeECCCCCEEE
Confidence 44444543332 23345667889999999999986643 2 368889988876432 322233445789999999887
Q ss_pred E-eeCCCe--EEEEEcCCCceeEeccccCCceeEEEECCCCCEEEEecC-CCc--EEEEEecCCC
Q psy18231 223 S-GASDKS--VILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQ-DNT--VMMWDVKSRS 281 (540)
Q Consensus 223 s-~s~dg~--i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~-dg~--i~iwd~~~~~ 281 (540)
. .+.++. |.++|+.+++.. .+..+........|+||++.|+..+. ++. |.++|+.+++
T Consensus 278 ~~~~~~g~~~Iy~~dl~tg~~~-~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~ 341 (448)
T PRK04792 278 LVLSKDGQPEIYVVDIATKALT-RITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGK 341 (448)
T ss_pred EEEeCCCCeEEEEEECCCCCeE-ECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCC
Confidence 5 455664 777888777643 44455566778899999998776553 444 4555555443
|
|
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=99.38 E-value=9.3e-10 Score=101.02 Aligned_cols=265 Identities=11% Similarity=0.052 Sum_probs=160.7
Q ss_pred ceeeeeccccccee--eeeecCeEEEEeCCCCCEEEEeeC----------CCcEEEEcCCCCeeEEEeecCC-------c
Q psy18231 147 WSIRVYRPLTVNRE--LFVLSGLMHTRFPVDGSYCLTCGS----------DKKIKLWNPYRNLLLKTYGGHA-------H 207 (540)
Q Consensus 147 ~~i~~~~~~~~~~~--~~h~~~v~~v~~spdg~~lat~~~----------dg~i~iwd~~~~~~~~~~~~h~-------~ 207 (540)
+.+.+.+..+.+.. +.-...-..+ +||||+.|+++.. +..|.+||+.+++.+.++..-. .
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G~~P~~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~ 105 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGGFLPNPV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGT 105 (352)
T ss_pred ceEEEEECCCCEEEEEEEccCCCcee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccC
Confidence 55666766654321 1111122234 9999999887655 7899999999999998886422 2
Q ss_pred ceeEEEEeeCCCeEEEee-C-CCeEEEEEcCCCceeEeccccCCceeEEEECCCCCEEEEecCCCcEEEEEecCCCCCCc
Q psy18231 208 EVNDATAACDSSQIASGA-S-DKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPI 285 (540)
Q Consensus 208 ~v~~l~~sp~~~~l~s~s-~-dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 285 (540)
.-..++++|||++|+... . +..|.+.|+.+++.+..+.-. +...-...+++... .-+.||......+.+......
T Consensus 106 ~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp-~~~~vy~t~e~~~~--~~~~Dg~~~~v~~d~~g~~~~ 182 (352)
T TIGR02658 106 YPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVP-DCYHIFPTANDTFF--MHCRDGSLAKVGYGTKGNPKI 182 (352)
T ss_pred ccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCC-CCcEEEEecCCccE--EEeecCceEEEEecCCCceEE
Confidence 234789999999998776 3 689999999999988877531 12222222222222 223355544444333221000
Q ss_pred chhhhhHhhhhcCCceeEEEEeecccccccccCceeeEEEeeeecccccceeeeeeccceeEEEeecccceecccccccc
Q psy18231 286 QVRCLNEALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPIS 365 (540)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 365 (540)
. ...+++..
T Consensus 183 ~-----------------------------------------------------------~~~vf~~~------------ 191 (352)
T TIGR02658 183 K-----------------------------------------------------------PTEVFHPE------------ 191 (352)
T ss_pred e-----------------------------------------------------------eeeeecCC------------
Confidence 0 00000000
Q ss_pred cccchhhhhhcccccEEEEEe-cCCeeEeeeCCCeEEEEeCCCC-----ceEEeee---------CCceEEEEEecCCcE
Q psy18231 366 IHNSCFQALKEARDSITSVHV-SDHEILTASLDCRIRRYDIRTG-----NLVTDYV---------GEPIVDACFTRDCQC 430 (540)
Q Consensus 366 ~~~~~~~~~~~~~~~v~~l~~-~~~~l~~~~~dg~i~iwd~~~~-----~~~~~~~---------~~~i~~~~~sp~~~~ 430 (540)
.. .+.. .+ .... ...++++... |.|.+.|+... +....+. .....-++++|+++.
T Consensus 192 --~~---~v~~--rP--~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~ 261 (352)
T TIGR02658 192 --DE---YLIN--HP--AYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDR 261 (352)
T ss_pred --cc---cccc--CC--ceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCE
Confidence 00 0000 11 1111 2245555555 99999996443 2222221 123445999999998
Q ss_pred EEeec----------CCCeEEEEeccccchhhhhccCcCCcceEEEEecCCCC-eEEEee-CCCcEEEEEecCCcceeEE
Q psy18231 431 ILTCS----------TDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDS-QIFCGS-SDGKIYKWQLVDSSQISTL 498 (540)
Q Consensus 431 l~~~~----------~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~s~~~~-~l~s~s-~dg~i~iwd~~~~~~~~~~ 498 (540)
+++.. ..+.|.++|..+++.+..+..-. ....+ +++||++ +|++.. .++.|.+.|..+++.+..+
T Consensus 262 lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG~-~~~~i--avS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i 338 (352)
T TIGR02658 262 IYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIELGH-EIDSI--NVSQDAKPLLYALSTGDKTLYIFDAETGKELSSV 338 (352)
T ss_pred EEEEecCCccccccCCCCEEEEEECCCCeEEEEEeCCC-ceeeE--EECCCCCeEEEEeCCCCCcEEEEECcCCeEEeee
Confidence 88743 22579999999999988876432 44555 8999999 777666 6788999999999999988
Q ss_pred E
Q psy18231 499 I 499 (540)
Q Consensus 499 ~ 499 (540)
.
T Consensus 339 ~ 339 (352)
T TIGR02658 339 N 339 (352)
T ss_pred c
Confidence 3
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >KOG1912|consensus | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.4e-10 Score=111.08 Aligned_cols=371 Identities=12% Similarity=0.114 Sum_probs=209.5
Q ss_pred eeeeecCeEEEEeCCC------C------CEEEEeeCCCcEEEEcCCCCeeEEEeecCCcceeEEEEee---CC-CeEEE
Q psy18231 160 ELFVLSGLMHTRFPVD------G------SYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAAC---DS-SQIAS 223 (540)
Q Consensus 160 ~~~h~~~v~~v~~spd------g------~~lat~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp---~~-~~l~s 223 (540)
...|...|+.+.|.|- + -+||++...|.|.+||...+..+..+..|..++..++|-+ +. ..|++
T Consensus 51 ie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~Lla 130 (1062)
T KOG1912|consen 51 IELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLA 130 (1062)
T ss_pred cccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhhhhcCCCcchhheeeeeccCcchheeEE
Confidence 3457788999999872 1 2577888899999999999999999999999999999988 33 45666
Q ss_pred eeCCCeEEEEEcCCCceeEeccccCCceeEEEECC-CCCEEEEecCCCcEEEEEecCCCCCCc--chhhhhHh---h---
Q psy18231 224 GASDKSVILWEVTTGQPVRRWREHASKVTCVKFNE-DSSVVISGSQDNTVMMWDVKSRSHHPI--QVRCLNEA---L--- 294 (540)
Q Consensus 224 ~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~--~~~~~~~~---~--- 294 (540)
-....++.+|+..+|+.............|+.+.| |.+++..-+..|.+.+-+.-..++... +...+... +
T Consensus 131 Ih~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~l 210 (1062)
T KOG1912|consen 131 IHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHL 210 (1062)
T ss_pred ecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhh
Confidence 67778999999999999988777677788899999 666666666667776665543221111 00000000 0
Q ss_pred h--hcCC-----ceeEEEE------eecc--cccccccCceeeEEEeeeeccccc------------ceeeeeeccceeE
Q psy18231 295 K--EARD-----SITSVHS------LVKS--TKNHLSNGLLTKLVFAFRCKYLNG------------LLSGVLMSTQHLM 347 (540)
Q Consensus 295 ~--~~~~-----~~~~~~~------~~~~--~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~ 347 (540)
+ ...+ ...+... +++. ..+.+. -......+.++.+.... .+...-......+
T Consensus 211 ere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lf-i~~prellv~dle~~~~l~vvpier~~akfv~vlP~~~rd~L 289 (1062)
T KOG1912|consen 211 ERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILF-ITFPRELLVFDLEYECCLAVVPIERGGAKFVDVLPDPRRDAL 289 (1062)
T ss_pred hhhhhccccccCCCcchhHHHHHHhhhcChhhhceEE-EEeccceEEEcchhhceeEEEEeccCCcceeEeccCCCcceE
Confidence 0 0000 0000000 0000 000000 00111111222211111 1111111112222
Q ss_pred EEeecccceeccccccccc-cc--------------chhhhhhcccccEEEEEec-CCeeEeeeCCCeEEEEeCCCCceE
Q psy18231 348 VLLDFLGSTQIGDVTPISI-HN--------------SCFQALKEARDSITSVHVS-DHEILTASLDCRIRRYDIRTGNLV 411 (540)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~-~~--------------~~~~~~~~~~~~v~~l~~~-~~~l~~~~~dg~i~iwd~~~~~~~ 411 (540)
......|...++.-+.... .. .+++..+.....+...+.+ |+.++.--.+|...+|.+.+++..
T Consensus 290 fclH~nG~ltirvrk~~~~~f~~~~~~l~~dl~~Q~~~vr~m~~~rp~~~~~cPs~~sa~avl~s~g~~~~w~l~~~ri~ 369 (1062)
T KOG1912|consen 290 FCLHSNGRLTIRVRKEEPTEFKKPNASLSMDLGEQVHVVRPMEEFRPVIGASCPSTPSALAVLYSSGDSTFWQLSNGRIH 369 (1062)
T ss_pred EEEecCCeEEEEEeeccCccccccchhhccccccceEEEeechhcccceeecCCCChhhhhhhhhcchhHHHhhhcCCcC
Confidence 2233333333322211100 00 0011111111111111122 344555556778888888755432
Q ss_pred Eeee------------------------------C---CceEEEEEe-----------cCC-------cEEEeecCCCeE
Q psy18231 412 TDYV------------------------------G---EPIVDACFT-----------RDC-------QCILTCSTDECL 440 (540)
Q Consensus 412 ~~~~------------------------------~---~~i~~~~~s-----------p~~-------~~l~~~~~dg~i 440 (540)
.... + ...++.... |.+ .++|.|+..|+|
T Consensus 370 ~~~~s~~iel~~pf~f~~~~~~v~k~~l~~LS~dg~h~sGs~~~~~~p~p~~t~~~~~p~~n~~~~~~pLvAvGT~sGTV 449 (1062)
T KOG1912|consen 370 LDYRSSSIELVLPFDFNLSTKLVGKTSLISLSDDGSHSSGSTCVRMRPMPELTKVENDPGGNTPAGTVPLVAVGTNSGTV 449 (1062)
T ss_pred cccccccccccccccccCceeehhhccccchhhcCCCCCCceeeecccCcccceeecCCCCCccceeeeeEEeecCCceE
Confidence 1110 0 011222111 222 358889999999
Q ss_pred EEEeccccchhhhhccCcCCcceEEEEecCCCCeE---------EEeeCCCcEEEEEecCCccee--EEEecccceeeeE
Q psy18231 441 RLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQI---------FCGSSDGKIYKWQLVDSSQIS--TLIHSVGKAVVNS 509 (540)
Q Consensus 441 ~i~d~~~~~~~~~~~~~~~~v~~~~~~~s~~~~~l---------~s~s~dg~i~iwd~~~~~~~~--~~~~~~~~~~v~~ 509 (540)
.++|+.++..-+.+..|+..|.++. |....+++ ++|+.-+.+.+-|+++|.... .+. +....+|+.
T Consensus 450 ~vvdvst~~v~~~fsvht~~Vkgle--W~g~sslvSfsys~~n~~sg~vrN~l~vtdLrtGlsk~fR~l~-~~despI~~ 526 (1062)
T KOG1912|consen 450 DVVDVSTNAVAASFSVHTSLVKGLE--WLGNSSLVSFSYSHVNSASGGVRNDLVVTDLRTGLSKRFRGLQ-KPDESPIRA 526 (1062)
T ss_pred EEEEecchhhhhhhcccccceeeee--eccceeEEEeeeccccccccceeeeEEEEEcccccccccccCC-CCCcCccee
Confidence 9999999999999999999998884 44333322 233344567888998885432 222 256689999
Q ss_pred EEEcCCCcEEEeec-CCeeEEEEccc
Q psy18231 510 LCSHPTRKHIMSAC-GNNVKLWTAEE 534 (540)
Q Consensus 510 l~~s~d~~~l~s~~-d~~i~iw~~~~ 534 (540)
+..|..|+||+..- |.-+.+||+.+
T Consensus 527 irvS~~~~yLai~Fr~~plEiwd~kt 552 (1062)
T KOG1912|consen 527 IRVSSSGRYLAILFRREPLEIWDLKT 552 (1062)
T ss_pred eeecccCceEEEEecccchHHHhhcc
Confidence 99999999999999 99999999853
|
|
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=3.1e-10 Score=109.77 Aligned_cols=221 Identities=14% Similarity=0.037 Sum_probs=133.3
Q ss_pred ecCeEEEEeCCCCCEEE---EeeCC--CcEEEEcCCCCeeEEEeecCCcceeEEEEeeCCCeEEEeeC-----CCeEEEE
Q psy18231 164 LSGLMHTRFPVDGSYCL---TCGSD--KKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGAS-----DKSVILW 233 (540)
Q Consensus 164 ~~~v~~v~~spdg~~la---t~~~d--g~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~-----dg~i~iw 233 (540)
...+.+-+|||||+.++ +...+ ..|.+.++.+++... +....+.....+|||||+.|+..+. |-.+.+|
T Consensus 184 ~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~-lt~~~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~ 262 (428)
T PRK01029 184 HSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKK-ILALQGNQLMPTFSPRKKLLAFISDRYGNPDLFIQSF 262 (428)
T ss_pred CCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceE-eecCCCCccceEECCCCCEEEEEECCCCCcceeEEEe
Confidence 34567789999998532 44444 357777887775433 3334555667899999998886553 2244557
Q ss_pred EcCCC---ceeEeccccCCceeEEEECCCCCEEEEec-CCCcEEEEEecCCCCCCcchhhhhHhhhhcCCceeEEEEeec
Q psy18231 234 EVTTG---QPVRRWREHASKVTCVKFNEDSSVVISGS-QDNTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVK 309 (540)
Q Consensus 234 d~~~~---~~~~~~~~h~~~v~~~~~~~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (540)
++..+ +.......+.......+|+|||+.|+..+ .+|...+|.+....
T Consensus 263 ~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~---------------------------- 314 (428)
T PRK01029 263 SLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDP---------------------------- 314 (428)
T ss_pred ecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcc----------------------------
Confidence 77653 33333333334456789999999877665 35544444332110
Q ss_pred ccccccccCceeeEEEeeeecccccceeeeeeccceeEEEeecccceecccccccccccchhhhhhcccccEEEEEecCC
Q psy18231 310 STKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEARDSITSVHVSDH 389 (540)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~ 389 (540)
T Consensus 315 -------------------------------------------------------------------------------- 314 (428)
T PRK01029 315 -------------------------------------------------------------------------------- 314 (428)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eeEeeeCCCeEEEEeCCCCceEEee--eCCceEEEEEecCCcEEEeecCC---CeEEEEeccccchhhhhccCcCCcceE
Q psy18231 390 EILTASLDCRIRRYDIRTGNLVTDY--VGEPIVDACFTRDCQCILTCSTD---ECLRLFDKATGELLEEYKGHKSGDFRI 464 (540)
Q Consensus 390 ~l~~~~~dg~i~iwd~~~~~~~~~~--~~~~i~~~~~sp~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~v~~~ 464 (540)
.+.....+ ....+....|||||+.|+..+.+ ..|.+||+.+++...... ....+...
T Consensus 315 -----------------~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~-~~~~~~~p 376 (428)
T PRK01029 315 -----------------EGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLTT-SPENKESP 376 (428)
T ss_pred -----------------cccceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEccC-CCCCccce
Confidence 00000111 11234567899999988876543 469999998886543222 22233344
Q ss_pred EEEecCCCCeEEEeeC---CCcEEEEEecCCcceeEEEecccceeeeEEEEcCCC
Q psy18231 465 ECCLDSKDSQIFCGSS---DGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTR 516 (540)
Q Consensus 465 ~~~~s~~~~~l~s~s~---dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~ 516 (540)
.|+|||++|+..+. ...|++||+..++..... ...+.+...+|+|-.
T Consensus 377 --~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~~Lt---~~~g~~~~p~Ws~~~ 426 (428)
T PRK01029 377 --SWAIDSLHLVYSAGNSNESELYLISLITKKTRKIV---IGSGEKRFPSWGAFP 426 (428)
T ss_pred --EECCCCCEEEEEECCCCCceEEEEECCCCCEEEee---cCCCcccCceecCCC
Confidence 79999998775432 356888998776654333 244557788898754
|
|
| >KOG4190|consensus | Back alignment and domain information |
|---|
Probab=99.35 E-value=3.8e-12 Score=116.95 Aligned_cols=242 Identities=14% Similarity=0.241 Sum_probs=172.1
Q ss_pred eEEEeecCCcceeEEEEeeCCCeEEEeeCCCeEEEEEcCC-------CceeEeccccCCceeEEEECCCCCEEEEecCCC
Q psy18231 198 LLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTT-------GQPVRRWREHASKVTCVKFNEDSSVVISGSQDN 270 (540)
Q Consensus 198 ~~~~~~~h~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~-------~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg 270 (540)
.+..+.||+..|..++--.+.+-+++++.|.+|++|.++. ..+..+++.|+.+|.++.|..+-++++++ ||
T Consensus 727 rL~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~ 804 (1034)
T KOG4190|consen 727 RLCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--DG 804 (1034)
T ss_pred eeecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--cC
Confidence 3566789999999988877888899999999999999864 23667788999999999999988877764 78
Q ss_pred cEEEEEecCCCCCCcchhhhhHhhhhcCCceeEEEEeecccccccccCceeeEEEeeeecccccceeeeeeccceeEEEe
Q psy18231 271 TVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLL 350 (540)
Q Consensus 271 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (540)
-|.+||.--+......
T Consensus 805 giHlWDPFigr~Laq~---------------------------------------------------------------- 820 (1034)
T KOG4190|consen 805 GIHLWDPFIGRLLAQM---------------------------------------------------------------- 820 (1034)
T ss_pred cceeecccccchhHhh----------------------------------------------------------------
Confidence 8999997655420000
Q ss_pred ecccceecccccccccccchhhhhhcccccEEEEEe-cCCeeEee-eCCCeEEEEeCCCCceEEeeeC-------CceEE
Q psy18231 351 DFLGSTQIGDVTPISIHNSCFQALKEARDSITSVHV-SDHEILTA-SLDCRIRRYDIRTGNLVTDYVG-------EPIVD 421 (540)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~-~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~-------~~i~~ 421 (540)
.-....+..+.|.++.- +...++.+ +...+++++|.+.++-..++.- .-+.+
T Consensus 821 -------------------~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~ 881 (1034)
T KOG4190|consen 821 -------------------EDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRA 881 (1034)
T ss_pred -------------------hcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeE
Confidence 00011122334445433 22444444 7789999999998876655541 35889
Q ss_pred EEEecCCcEEEeecCCCeEEEEeccccchhhhhccCcCCcceEEEEecCCCCeEEEeeCCCcEEE-EEecCCcceeEEEe
Q psy18231 422 ACFTRDCQCILTCSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYK-WQLVDSSQISTLIH 500 (540)
Q Consensus 422 ~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~s~~~~~l~s~s~dg~i~i-wd~~~~~~~~~~~~ 500 (540)
++..|.|++++++-.+|+|.+.|.++|+.+..++.-......+ -.|.++.|+....|.++.+ |...++....+.+.
T Consensus 882 iaVa~~GN~lAa~LSnGci~~LDaR~G~vINswrpmecdllql---aapsdq~L~~saldHslaVnWhaldgimh~q~kp 958 (1034)
T KOG4190|consen 882 IAVADKGNKLAAALSNGCIAILDARNGKVINSWRPMECDLLQL---AAPSDQALAQSALDHSLAVNWHALDGIMHLQDKP 958 (1034)
T ss_pred EEeccCcchhhHHhcCCcEEEEecCCCceeccCCcccchhhhh---cCchhHHHHhhcccceeEeeehhcCCeeeeccCC
Confidence 9999999999999999999999999999988887666554444 2366778999999999999 98777766655552
Q ss_pred cccceeeeEEEEcCCCcEEEeec-CCeeEEEE
Q psy18231 501 SVGKAVVNSLCSHPTRKHIMSAC-GNNVKLWT 531 (540)
Q Consensus 501 ~~~~~~v~~l~~s~d~~~l~s~~-d~~i~iw~ 531 (540)
...+..-+. .-|..|+++. .+.+.+|.
T Consensus 959 --ppepahflq--svgpSLV~a~~Gn~lgVYa 986 (1034)
T KOG4190|consen 959 --PPEPAHFLQ--SVGPSLVTAQNGNILGVYA 986 (1034)
T ss_pred --CCcchhhhh--ccCceeEEeccCcEEEEEe
Confidence 222211111 1255666666 55666664
|
|
| >KOG1409|consensus | Back alignment and domain information |
|---|
Probab=99.34 E-value=4.9e-11 Score=103.45 Aligned_cols=250 Identities=15% Similarity=0.226 Sum_probs=183.8
Q ss_pred CeeEEEeecCCcceeEEEEeeCCCeEEEeeCCCeEEEEEcC-CCceeEec-cccCCceeEEEECCCCCEEEEecCCCcEE
Q psy18231 196 NLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVT-TGQPVRRW-REHASKVTCVKFNEDSSVVISGSQDNTVM 273 (540)
Q Consensus 196 ~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~-~~~~~~~~-~~h~~~v~~~~~~~~~~~l~s~~~dg~i~ 273 (540)
...+..++||.+.|+....-|-..-+++.+.|.+++||--. .++.-..+ ..-..+++++.+.++...|+.|-..|++.
T Consensus 14 p~ll~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngtvt 93 (404)
T KOG1409|consen 14 PELLSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGTVT 93 (404)
T ss_pred hhhhhhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecceEE
Confidence 34566778999999999998888889999999999999543 33332222 12357889999999999999999999988
Q ss_pred EEEecCCCCCCcchhhhhHhhhhcCCceeEEEEeecccccccccCceeeEEEeeeecccccceeeeeeccceeEEEeecc
Q psy18231 274 MWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFL 353 (540)
Q Consensus 274 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (540)
-+.+...-.+
T Consensus 94 efs~sedfnk---------------------------------------------------------------------- 103 (404)
T KOG1409|consen 94 EFALSEDFNK---------------------------------------------------------------------- 103 (404)
T ss_pred EEEhhhhhhh----------------------------------------------------------------------
Confidence 8876543210
Q ss_pred cceecccccccccccchhhhhhcccccEEEEEecC--CeeEeeeCCCeEEEEeCCCCceEEeeeC-CceEEEEEecCCcE
Q psy18231 354 GSTQIGDVTPISIHNSCFQALKEARDSITSVHVSD--HEILTASLDCRIRRYDIRTGNLVTDYVG-EPIVDACFTRDCQC 430 (540)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~i~~~~~sp~~~~ 430 (540)
....+....|...+..+-|+- .++++.+.|..+..--.+.+..+..+.- ..-+++.+.-. +
T Consensus 104 --------------m~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~~--~ 167 (404)
T KOG1409|consen 104 --------------MTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFETPASALQFDAL--Y 167 (404)
T ss_pred --------------cchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEeeccCCCCceeeE--E
Confidence 012335667889999998875 8899999998877666666554433321 11112222111 5
Q ss_pred EEeecCCCeEEEEecc--ccchhhhhccCcCCcceEEEEecCCCCeEEEeeCCCcEEEEEecCCcceeEEEecccceeee
Q psy18231 431 ILTCSTDECLRLFDKA--TGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVN 508 (540)
Q Consensus 431 l~~~~~dg~i~i~d~~--~~~~~~~~~~~~~~v~~~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~ 508 (540)
...|...|.|.+..+. ...++.++.+|...+.++ +|.+..+.|.+|..|..+.+||+--.+-+.. ...+|...|.
T Consensus 168 ~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l--~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~-el~gh~~kV~ 244 (404)
T KOG1409|consen 168 AFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCL--KWDPGQRLLFSGASDHSVIMWDIGGRKGTAY-ELQGHNDKVQ 244 (404)
T ss_pred EEecccccceEEEEEeecCCceEEEEcCcccceEEE--EEcCCCcEEEeccccCceEEEeccCCcceee-eeccchhhhh
Confidence 5667777777665443 456788899999999988 8999999999999999999999865544332 2238999999
Q ss_pred EEEEcCCCcEEEeec-CCeeEEEEccc
Q psy18231 509 SLCSHPTRKHIMSAC-GNNVKLWTAEE 534 (540)
Q Consensus 509 ~l~~s~d~~~l~s~~-d~~i~iw~~~~ 534 (540)
.+..-+--+.|++++ ||.|.+|+.+.
T Consensus 245 ~l~~~~~t~~l~S~~edg~i~~w~mn~ 271 (404)
T KOG1409|consen 245 ALSYAQHTRQLISCGEDGGIVVWNMNV 271 (404)
T ss_pred hhhhhhhheeeeeccCCCeEEEEeccc
Confidence 999988889999999 99999999864
|
|
| >KOG1064|consensus | Back alignment and domain information |
|---|
Probab=99.31 E-value=2.3e-11 Score=126.33 Aligned_cols=195 Identities=13% Similarity=0.255 Sum_probs=161.4
Q ss_pred eecCeEEEEeCCCCCEEEEeeCCCcEEEEcCCCCeeEEEeec-CCcceeEEEEeeCCCeEEEeeCCCeEEEEEcCCCcee
Q psy18231 163 VLSGLMHTRFPVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGG-HAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPV 241 (540)
Q Consensus 163 h~~~v~~v~~spdg~~lat~~~dg~i~iwd~~~~~~~~~~~~-h~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~ 241 (540)
+...|.++.=+|...+-+||+.||.|++|....+..+..+.. -...|+.+.|+.+|+.+..+..||.+.+|... .++.
T Consensus 2207 ~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~-pk~~ 2285 (2439)
T KOG1064|consen 2207 PVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQAS-PKPY 2285 (2439)
T ss_pred ccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccC-Ccce
Confidence 557788998899989999999999999999988888777642 23889999999999999999999999999986 6777
Q ss_pred EeccccCCceeEEEECCCCCEEEEec---CCCcEEEEEecCCCCCCcchhhhhHhhhhcCCceeEEEEeecccccccccC
Q psy18231 242 RRWREHASKVTCVKFNEDSSVVISGS---QDNTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHLSNG 318 (540)
Q Consensus 242 ~~~~~h~~~v~~~~~~~~~~~l~s~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (540)
...+.|....+.+.|-. ..+++++ .++.+.+||..-.....
T Consensus 2286 ~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s---------------------------------- 2329 (2439)
T KOG1064|consen 2286 TSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNS---------------------------------- 2329 (2439)
T ss_pred eccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccc----------------------------------
Confidence 77889999999999975 5677765 46789999964432100
Q ss_pred ceeeEEEeeeecccccceeeeeeccceeEEEeecccceecccccccccccchhhhhhcccccEEEEEecC--CeeEeeeC
Q psy18231 319 LLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEARDSITSVHVSD--HEILTASL 396 (540)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~--~~l~~~~~ 396 (540)
+ ....|.+.++++++-| +.+++|+.
T Consensus 2330 ---------------------------------------------------~--v~~~H~~gaT~l~~~P~~qllisggr 2356 (2439)
T KOG1064|consen 2330 ---------------------------------------------------L--VHTCHDGGATVLAYAPKHQLLISGGR 2356 (2439)
T ss_pred ---------------------------------------------------e--eeeecCCCceEEEEcCcceEEEecCC
Confidence 1 1257899999999999 88999999
Q ss_pred CCeEEEEeCCCCceEEeeeCCceEEEEEecCCcEEEeecCCCeEEEEeccccchhhhhc
Q psy18231 397 DCRIRRYDIRTGNLVTDYVGEPIVDACFTRDCQCILTCSTDECLRLFDKATGELLEEYK 455 (540)
Q Consensus 397 dg~i~iwd~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~ 455 (540)
+|.|++||++..++++.+.. +. ...++++|+..|.++||++.....++++.
T Consensus 2357 ~G~v~l~D~rqrql~h~~~~-------~~-~~~~f~~~ss~g~ikIw~~s~~~ll~~~p 2407 (2439)
T KOG1064|consen 2357 KGEVCLFDIRQRQLRHTFQA-------LD-TREYFVTGSSEGNIKIWRLSEFGLLHTFP 2407 (2439)
T ss_pred cCcEEEeehHHHHHHHHhhh-------hh-hhheeeccCcccceEEEEccccchhhcCc
Confidence 99999999998888777654 44 66789999999999999999887777665
|
|
| >COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.3e-10 Score=99.33 Aligned_cols=279 Identities=16% Similarity=0.276 Sum_probs=170.5
Q ss_pred CCcceeEEEEeeCCCeEEEeeCCCeEEEEEcCCCc-----eeEeccccC------------CceeEEEECCCC--CEEEE
Q psy18231 205 HAHEVNDATAACDSSQIASGASDKSVILWEVTTGQ-----PVRRWREHA------------SKVTCVKFNEDS--SVVIS 265 (540)
Q Consensus 205 h~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~-----~~~~~~~h~------------~~v~~~~~~~~~--~~l~s 265 (540)
....|+++.|...|.+|++|...|.|.++.-+... ....+++|. ..|..+.|..++ ..++.
T Consensus 25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLl 104 (460)
T COG5170 25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLL 104 (460)
T ss_pred ccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEE
Confidence 35678999999999999999999999999865432 222355553 357888887644 45666
Q ss_pred ecCCCcEEEEEecCCCCCCcchhhhhHhhhhcCCceeEEEEeecccccccccCceeeEEEeeeecccccceeeeeeccce
Q psy18231 266 GSQDNTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQH 345 (540)
Q Consensus 266 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (540)
.+.|++|++|.+.....+.+..-.+......... +.+.. .+.....+ ....+.
T Consensus 105 stNdktiKlWKiyeknlk~va~nnls~~~~~~~~-------------g~~~s---~~~l~lpr-----------ls~hd~ 157 (460)
T COG5170 105 STNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMG-------------GPLTS---TKELLLPR-----------LSEHDE 157 (460)
T ss_pred ecCCceeeeeeeecccchhhhccccccccccccC-------------CCcCC---HHHhhccc-----------ccccce
Confidence 6789999999998765322221111100000000 00000 00000000 000000
Q ss_pred eEEEeecccceecccccccccccchhhhhhcccccEEEEEecC-CeeEeeeCCCeEEEEeCCCCceEEee---eC-----
Q psy18231 346 LMVLLDFLGSTQIGDVTPISIHNSCFQALKEARDSITSVHVSD-HEILTASLDCRIRRYDIRTGNLVTDY---VG----- 416 (540)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~---~~----- 416 (540)
.+.+ ..+......|.--|.+++++. ...+..+.|-.|.+|+++.......+ ..
T Consensus 158 iiaa------------------~p~rvyaNaH~yhiNSiS~NsD~et~lSaDdLrINLWnl~i~D~sFnIVDiKP~nmee 219 (460)
T COG5170 158 IIAA------------------KPCRVYANAHPYHINSISFNSDKETLLSADDLRINLWNLEIIDGSFNIVDIKPHNMEE 219 (460)
T ss_pred EEEe------------------ccceeccccceeEeeeeeecCchheeeeccceeeeeccccccCCceEEEeccCccHHH
Confidence 0000 001112256888899999988 66666778889999998855433322 22
Q ss_pred --CceEEEEEecC-CcEEEeecCCCeEEEEeccccch------h----------hhhccCcCCcceEEEEecCCCCeEEE
Q psy18231 417 --EPIVDACFTRD-CQCILTCSTDECLRLFDKATGEL------L----------EEYKGHKSGDFRIECCLDSKDSQIFC 477 (540)
Q Consensus 417 --~~i~~~~~sp~-~~~l~~~~~dg~i~i~d~~~~~~------~----------~~~~~~~~~v~~~~~~~s~~~~~l~s 477 (540)
.-|++..|+|. .+.+.-.+..|.|++-|++.... + .-+.+-...|..+ .|+++|+++++
T Consensus 220 LteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~--kFs~ngryIls 297 (460)
T COG5170 220 LTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDF--KFSDNGRYILS 297 (460)
T ss_pred HHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcce--EEcCCCcEEEE
Confidence 35889999994 45666777889999999984321 1 1112222344445 89999999998
Q ss_pred eeCCCcEEEEEecCC-cceeEEEecccc------------eee---eEEEEcCCCcEEEeec-CCeeEEEEcc
Q psy18231 478 GSSDGKIYKWQLVDS-SQISTLIHSVGK------------AVV---NSLCSHPTRKHIMSAC-GNNVKLWTAE 533 (540)
Q Consensus 478 ~s~dg~i~iwd~~~~-~~~~~~~~~~~~------------~~v---~~l~~s~d~~~l~s~~-d~~i~iw~~~ 533 (540)
-+. -+|+|||+... .++.++. -|. ..| .-+.||.|.+.+.+|+ .+..-++-+.
T Consensus 298 Rdy-ltvkiwDvnm~k~pikTi~--~h~~l~~~l~d~YEnDaifdkFeisfSgd~~~v~sgsy~NNfgiyp~~ 367 (460)
T COG5170 298 RDY-LTVKIWDVNMAKNPIKTIP--MHCDLMDELNDVYENDAIFDKFEISFSGDDKHVLSGSYSNNFGIYPTD 367 (460)
T ss_pred ecc-ceEEEEecccccCCceeec--hHHHHHHHHHhhhhccceeeeEEEEecCCcccccccccccceeeeccc
Confidence 876 58999998754 5666664 221 223 3478899999999998 8777777643
|
|
| >KOG4547|consensus | Back alignment and domain information |
|---|
Probab=99.30 E-value=2.3e-10 Score=106.54 Aligned_cols=116 Identities=13% Similarity=0.197 Sum_probs=96.1
Q ss_pred hhcccccEEEEEecC--CeeEeeeCCCeEEEEeCCCCceEEeeeC--CceEEEEEecCCcEEEeecCCCeEEEEeccccc
Q psy18231 374 LKEARDSITSVHVSD--HEILTASLDCRIRRYDIRTGNLVTDYVG--EPIVDACFTRDCQCILTCSTDECLRLFDKATGE 449 (540)
Q Consensus 374 ~~~~~~~v~~l~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~--~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~ 449 (540)
...|.+.|.++.++. ..+.+++.|+.+..|+....+.+..... ..+.+++++|||+.+++++ ++|++||+++++
T Consensus 98 t~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l~~as--~~ik~~~~~~ke 175 (541)
T KOG4547|consen 98 TDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKILLTAS--RQIKVLDIETKE 175 (541)
T ss_pred cCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCCEEEecc--ceEEEEEccCce
Confidence 357889999999887 8899999999999999999998888875 5689999999999999887 579999999999
Q ss_pred hhhhhccCcCCcceEEEEecCC---CCe-EEEeeCCCcEEEEEecC
Q psy18231 450 LLEEYKGHKSGDFRIECCLDSK---DSQ-IFCGSSDGKIYKWQLVD 491 (540)
Q Consensus 450 ~~~~~~~~~~~v~~~~~~~s~~---~~~-l~s~s~dg~i~iwd~~~ 491 (540)
.+.+|.+|.++|.++.+.-.-+ |.+ |.+...+.-+.+|-+..
T Consensus 176 vv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 176 VVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred EEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 9999999999999985443322 455 44455666688887654
|
|
| >COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.6e-10 Score=98.88 Aligned_cols=245 Identities=19% Similarity=0.361 Sum_probs=164.4
Q ss_pred eecCeEEEEeCCCCCEEEEeeCCCcEEEEcCCCCe-----eEEEeecCC------------cceeEEEEeeCCC--eEEE
Q psy18231 163 VLSGLMHTRFPVDGSYCLTCGSDKKIKLWNPYRNL-----LLKTYGGHA------------HEVNDATAACDSS--QIAS 223 (540)
Q Consensus 163 h~~~v~~v~~spdg~~lat~~~dg~i~iwd~~~~~-----~~~~~~~h~------------~~v~~l~~sp~~~--~l~s 223 (540)
..+.|+++.|...|.||++|...|.|.++.-+... ....+++|. ..|..+.|..++. .++.
T Consensus 25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLl 104 (460)
T COG5170 25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLL 104 (460)
T ss_pred ccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEE
Confidence 34679999999999999999999999999754332 233355554 3577888877543 4677
Q ss_pred eeCCCeEEEEEcCCCc------------------------------------------eeEec-cccCCceeEEEECCCC
Q psy18231 224 GASDKSVILWEVTTGQ------------------------------------------PVRRW-REHASKVTCVKFNEDS 260 (540)
Q Consensus 224 ~s~dg~i~iwd~~~~~------------------------------------------~~~~~-~~h~~~v~~~~~~~~~ 260 (540)
.+.|.+|++|.+.... +.+.. ..|.-.|.++.|+.|.
T Consensus 105 stNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~ 184 (460)
T COG5170 105 STNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDK 184 (460)
T ss_pred ecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCch
Confidence 7789999999885331 00001 2466678899999988
Q ss_pred CEEEEecCCCcEEEEEecCCCCCCcchhhhhHhhhhcCCceeEEEEeecccccccccCceeeEEEeeeecccccceeeee
Q psy18231 261 SVVISGSQDNTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVL 340 (540)
Q Consensus 261 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (540)
..++++. |=.|.+|+++-...
T Consensus 185 et~lSaD-dLrINLWnl~i~D~---------------------------------------------------------- 205 (460)
T COG5170 185 ETLLSAD-DLRINLWNLEIIDG---------------------------------------------------------- 205 (460)
T ss_pred heeeecc-ceeeeeccccccCC----------------------------------------------------------
Confidence 8888764 67899998865431
Q ss_pred eccceeEEEeecccceecccccccccccchhhhhhcccccEEEEEecC---CeeEeeeCCCeEEEEeCCCCceE------
Q psy18231 341 MSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEARDSITSVHVSD---HEILTASLDCRIRRYDIRTGNLV------ 411 (540)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~---~~l~~~~~dg~i~iwd~~~~~~~------ 411 (540)
...+.++.+ .....-..-|++..|+| ..+.-.+..|.|++-|++...+.
T Consensus 206 --------------sFnIVDiKP--------~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~kl 263 (460)
T COG5170 206 --------------SFNIVDIKP--------HNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKL 263 (460)
T ss_pred --------------ceEEEeccC--------ccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchhh
Confidence 001111111 02222345577888888 66777888999999999844221
Q ss_pred Ee--eeC----------CceEEEEEecCCcEEEeecCCCeEEEEecccc-chhhhhccCc------------CCcc-eEE
Q psy18231 412 TD--YVG----------EPIVDACFTRDCQCILTCSTDECLRLFDKATG-ELLEEYKGHK------------SGDF-RIE 465 (540)
Q Consensus 412 ~~--~~~----------~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~------------~~v~-~~~ 465 (540)
.. +.+ ..|..+.|+++|+++++-+. .+|+|||.... .++.++.-|. ..|. ...
T Consensus 264 fe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnDaifdkFe 342 (460)
T COG5170 264 FELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNPIKTIPMHCDLMDELNDVYENDAIFDKFE 342 (460)
T ss_pred hhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccccCCceeechHHHHHHHHHhhhhccceeeeEE
Confidence 11 111 46889999999999987654 68999998754 3444443332 1121 234
Q ss_pred EEecCCCCeEEEeeCCCcEEEEEe
Q psy18231 466 CCLDSKDSQIFCGSSDGKIYKWQL 489 (540)
Q Consensus 466 ~~~s~~~~~l~s~s~dg~i~iwd~ 489 (540)
+.||.|.+.+.+|+..+..-+|-.
T Consensus 343 isfSgd~~~v~sgsy~NNfgiyp~ 366 (460)
T COG5170 343 ISFSGDDKHVLSGSYSNNFGIYPT 366 (460)
T ss_pred EEecCCcccccccccccceeeecc
Confidence 578999999999998888777763
|
|
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.5e-09 Score=105.06 Aligned_cols=111 Identities=13% Similarity=0.086 Sum_probs=72.3
Q ss_pred EEEEEecCCcEEEeec-CCCeEEEE--eccc-cchhhhhccCcCCcceEEEEecCCCCeEEEeeCC---CcEEEEEecCC
Q psy18231 420 VDACFTRDCQCILTCS-TDECLRLF--DKAT-GELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSD---GKIYKWQLVDS 492 (540)
Q Consensus 420 ~~~~~sp~~~~l~~~~-~dg~i~i~--d~~~-~~~~~~~~~~~~~v~~~~~~~s~~~~~l~s~s~d---g~i~iwd~~~~ 492 (540)
...+|+|||+.|+..+ .+|...+| ++.. +.....+..+...+... .|||||++|+..+.+ ..|++||+.++
T Consensus 284 ~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p--~wSPDG~~Laf~~~~~g~~~I~v~dl~~g 361 (428)
T PRK01029 284 GNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCP--AWSPDGKKIAFCSVIKGVRQICVYDLATG 361 (428)
T ss_pred CCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccce--eECCCCCEEEEEEcCCCCcEEEEEECCCC
Confidence 4578999999877655 45654444 4432 22233333333344444 899999998876543 46999999887
Q ss_pred cceeEEEecccceeeeEEEEcCCCcEEEeec----CCeeEEEEcccc
Q psy18231 493 SQISTLIHSVGKAVVNSLCSHPTRKHIMSAC----GNNVKLWTAEED 535 (540)
Q Consensus 493 ~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~----d~~i~iw~~~~~ 535 (540)
+.. .+. .....+....|+|||+.|+... ...|.+|++.++
T Consensus 362 ~~~-~Lt--~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g 405 (428)
T PRK01029 362 RDY-QLT--TSPENKESPSWAIDSLHLVYSAGNSNESELYLISLITK 405 (428)
T ss_pred CeE-Ecc--CCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCC
Confidence 654 333 2234567899999999887543 346888888654
|
|
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.27 E-value=3.3e-08 Score=87.35 Aligned_cols=282 Identities=9% Similarity=0.053 Sum_probs=176.1
Q ss_pred cceeeeecccccc------eeeeeecCeEEEEeCCCCCEEEEeeC---CCcEEEEcCCC--CeeEE--EeecCCcceeEE
Q psy18231 146 EWSIRVYRPLTVN------RELFVLSGLMHTRFPVDGSYCLTCGS---DKKIKLWNPYR--NLLLK--TYGGHAHEVNDA 212 (540)
Q Consensus 146 ~~~i~~~~~~~~~------~~~~h~~~v~~v~~spdg~~lat~~~---dg~i~iwd~~~--~~~~~--~~~~h~~~v~~l 212 (540)
..-|..|+..+.. ....+.+..+-++|+|++++|.++-. +|.|.-|.++. |++.. .......+-..+
T Consensus 15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yv 94 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYV 94 (346)
T ss_pred CCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEE
Confidence 4457777766322 34557788999999999999998855 46777776654 44322 222223344789
Q ss_pred EEeeCCCeEEEeeCC-CeEEEEEcCC-CceeE--eccccCCc----------eeEEEECCCCCEEEEecC-CCcEEEEEe
Q psy18231 213 TAACDSSQIASGASD-KSVILWEVTT-GQPVR--RWREHASK----------VTCVKFNEDSSVVISGSQ-DNTVMMWDV 277 (540)
Q Consensus 213 ~~sp~~~~l~s~s~d-g~i~iwd~~~-~~~~~--~~~~h~~~----------v~~~~~~~~~~~l~s~~~-dg~i~iwd~ 277 (540)
++++++++|+++... |.|.++-++. |.... .+..|.+. +....+.|++++|++..- --.|.+|++
T Consensus 95 svd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~ 174 (346)
T COG2706 95 SVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDL 174 (346)
T ss_pred EECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEc
Confidence 999999999998764 7899999865 43221 12234444 889999999999988743 125999999
Q ss_pred cCCCCCCcchhhhhHhhhhcCCceeEEEEeecccccccccCceeeEEEeeeecccccceeeeeeccceeEEEeeccccee
Q psy18231 278 KSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQ 357 (540)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (540)
..++..+...
T Consensus 175 ~dg~L~~~~~---------------------------------------------------------------------- 184 (346)
T COG2706 175 DDGKLTPADP---------------------------------------------------------------------- 184 (346)
T ss_pred ccCccccccc----------------------------------------------------------------------
Confidence 9776322210
Q ss_pred cccccccccccchhhhhhcccccEEEEEecC--CeeE-eeeCCCeEEEEeCCCC-ce---EEeee-------C-CceEEE
Q psy18231 358 IGDVTPISIHNSCFQALKEARDSITSVHVSD--HEIL-TASLDCRIRRYDIRTG-NL---VTDYV-------G-EPIVDA 422 (540)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~--~~l~-~~~~dg~i~iwd~~~~-~~---~~~~~-------~-~~i~~~ 422 (540)
...........|.|+| ++.. +.-.+++|.+|..+.. .. ++.+. + .....+
T Consensus 185 ---------------~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaI 249 (346)
T COG2706 185 ---------------AEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAI 249 (346)
T ss_pred ---------------cccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEE
Confidence 0012344567889998 3333 4456899999998873 22 22221 1 467888
Q ss_pred EEecCCcEEEeecC-CCeEEEEecccc-chhhhhcc-CcCCcceEEEEecCCCCeEEEeeCCC-cEEEEEec--CCccee
Q psy18231 423 CFTRDCQCILTCST-DECLRLFDKATG-ELLEEYKG-HKSGDFRIECCLDSKDSQIFCGSSDG-KIYKWQLV--DSSQIS 496 (540)
Q Consensus 423 ~~sp~~~~l~~~~~-dg~i~i~d~~~~-~~~~~~~~-~~~~v~~~~~~~s~~~~~l~s~s~dg-~i~iwd~~--~~~~~~ 496 (540)
.++|||++|.++.. ...|.+|.+... ..+..... ......--.+.+++.|++|+++..++ .|.+|... +|++-.
T Consensus 250 his~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~TG~L~~ 329 (346)
T COG2706 250 HISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERDKETGRLTL 329 (346)
T ss_pred EECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcCCCceEEe
Confidence 99999999998865 346777766532 11211111 11111122347899999988887654 58888764 343322
Q ss_pred EEEecccceeeeEEEEc
Q psy18231 497 TLIHSVGKAVVNSLCSH 513 (540)
Q Consensus 497 ~~~~~~~~~~v~~l~~s 513 (540)
... ........|+.|.
T Consensus 330 ~~~-~~~~p~Pvcv~f~ 345 (346)
T COG2706 330 LGR-YAVVPEPVCVKFL 345 (346)
T ss_pred ccc-ccCCCCcEEEEEc
Confidence 222 1233445566553
|
|
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.8e-08 Score=91.57 Aligned_cols=141 Identities=11% Similarity=0.076 Sum_probs=111.6
Q ss_pred CeeEeeeCCCeEEEEeCCCCceEEeeeCCceEEEEEecCCcEEEeecCCC-eEEEEeccccchhhhhccCcCCcceEEEE
Q psy18231 389 HEILTASLDCRIRRYDIRTGNLVTDYVGEPIVDACFTRDCQCILTCSTDE-CLRLFDKATGELLEEYKGHKSGDFRIECC 467 (540)
Q Consensus 389 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg-~i~i~d~~~~~~~~~~~~~~~~v~~~~~~ 467 (540)
++++..| -|...+.+...+-.++.-+...|.-..+.-+++-++.|..|| .+-|||..+++.. .+...-+.|..+ .
T Consensus 333 d~ia~VS-RGkaFi~~~~~~~~iqv~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~k-r~e~~lg~I~av--~ 408 (668)
T COG4946 333 DYIALVS-RGKAFIMRPWDGYSIQVGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVK-RIEKDLGNIEAV--K 408 (668)
T ss_pred cEEEEEe-cCcEEEECCCCCeeEEcCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEE-EeeCCccceEEE--E
Confidence 5555555 466777777766666665666788888888888999999999 8999999887643 344455667666 7
Q ss_pred ecCCCCeEEEeeCCCcEEEEEecCCcceeEEEecccceeeeEEEEcCCCcEEEeec-CC----eeEEEEcccc
Q psy18231 468 LDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC-GN----NVKLWTAEED 535 (540)
Q Consensus 468 ~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~-d~----~i~iw~~~~~ 535 (540)
.+++|++++.+.....+.+.|+.+++....-+ ...+-|+.++|+|+++++|-+- +| .|+++|+.++
T Consensus 409 vs~dGK~~vvaNdr~el~vididngnv~~idk--S~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~ 479 (668)
T COG4946 409 VSPDGKKVVVANDRFELWVIDIDNGNVRLIDK--SEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGG 479 (668)
T ss_pred EcCCCcEEEEEcCceEEEEEEecCCCeeEecc--cccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCC
Confidence 89999999999999999999999998755544 5677899999999999999876 65 7899998764
|
|
| >KOG0309|consensus | Back alignment and domain information |
|---|
Probab=99.21 E-value=2.2e-10 Score=109.19 Aligned_cols=253 Identities=19% Similarity=0.306 Sum_probs=169.1
Q ss_pred ecccccceeeeeecC--eEEEEeCCCC--CEEEEeeCCCcEEEEcCCC---CeeEEEeecCCcceeEEEEeeCC-CeEEE
Q psy18231 152 YRPLTVNRELFVLSG--LMHTRFPVDG--SYCLTCGSDKKIKLWNPYR---NLLLKTYGGHAHEVNDATAACDS-SQIAS 223 (540)
Q Consensus 152 ~~~~~~~~~~~h~~~--v~~v~~spdg--~~lat~~~dg~i~iwd~~~---~~~~~~~~~h~~~v~~l~~sp~~-~~l~s 223 (540)
-++.+..+.+.|..+ |-.+.|+|.. .+-++......-.+|++.. ......+.+|...|+.+.|+|.. ..+++
T Consensus 53 d~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlat 132 (1081)
T KOG0309|consen 53 DDPFTPPRWLHHITPWQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLAT 132 (1081)
T ss_pred cCCCCCceeeeccCcchhcceecccCCCCceeEEecCcchhhhhhhhcCCccceEEEEecCccceeccccCCCCCcceee
Confidence 344445566666654 7788888853 2333333345556899753 34455678999999999999954 46899
Q ss_pred eeCCCeEEEEEcCCC-ceeEeccccCCceeEEEECCCCCEEEEecCCCcEEEEEecCCCCCCcchhhhhHhhhhcCCcee
Q psy18231 224 GASDKSVILWEVTTG-QPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQVRCLNEALKEARDSIT 302 (540)
Q Consensus 224 ~s~dg~i~iwd~~~~-~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (540)
++.|..+..||+++. .++..+..-......++|+-....+...+..+.|.+||++.+..
T Consensus 133 csvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i~vwd~r~gs~-------------------- 192 (1081)
T KOG0309|consen 133 CSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASSHGNDIFVWDLRKGST-------------------- 192 (1081)
T ss_pred ccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhhccCCceEEEeccCCCc--------------------
Confidence 999999999999875 45555555566678899987443444445667899999988762
Q ss_pred EEEEeecccccccccCceeeEEEeeeecccccceeeeeeccceeEEEeecccceecccccccccccchhhhhhcccccEE
Q psy18231 303 SVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEARDSIT 382 (540)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 382 (540)
++..+++|...|.
T Consensus 193 -------------------------------------------------------------------pl~s~K~~vs~vn 205 (1081)
T KOG0309|consen 193 -------------------------------------------------------------------PLCSLKGHVSSVN 205 (1081)
T ss_pred -------------------------------------------------------------------ceEEecccceeee
Confidence 1225566888888
Q ss_pred EEEecC---CeeEeeeCCCeEEEEeCCCCceE--Eeee-CCceEEEEEecCCc--EEEeecCCCeEEE---------Eec
Q psy18231 383 SVHVSD---HEILTASLDCRIRRYDIRTGNLV--TDYV-GEPIVDACFTRDCQ--CILTCSTDECLRL---------FDK 445 (540)
Q Consensus 383 ~l~~~~---~~l~~~~~dg~i~iwd~~~~~~~--~~~~-~~~i~~~~~sp~~~--~l~~~~~dg~i~i---------~d~ 445 (540)
.+.|+. ..+.+.+.||+++.||....... +... ..+|....+.|-|. ++.-.-.+..+.+ |+.
T Consensus 206 ~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~ 285 (1081)
T KOG0309|consen 206 SIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNV 285 (1081)
T ss_pred hHHHhhhhhhhhcccCCCCceeeecccccccccceeccccCcceeccccccCceeEeccccCCeeeeeccccchhhhhcc
Confidence 888887 78999999999999998855332 2222 35677777777443 2222222223333 333
Q ss_pred cc-cchhhhhccCcCCcceEEE------EecCC--CCeEEEeeCCCcEEEEEecC
Q psy18231 446 AT-GELLEEYKGHKSGDFRIEC------CLDSK--DSQIFCGSSDGKIYKWQLVD 491 (540)
Q Consensus 446 ~~-~~~~~~~~~~~~~v~~~~~------~~s~~--~~~l~s~s~dg~i~iwd~~~ 491 (540)
.+ .+++++|.+|...|...-+ .+..| .-.|++-|.|.++++|-+.+
T Consensus 286 ~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~~ 340 (1081)
T KOG0309|consen 286 FDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPIDS 340 (1081)
T ss_pred ccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecCCceEeeeccH
Confidence 33 3578899999887643311 11112 22599999999999998754
|
|
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=99.21 E-value=5.1e-09 Score=95.03 Aligned_cols=123 Identities=10% Similarity=0.122 Sum_probs=106.2
Q ss_pred eeeeeecCeEEEEeCCCCCEEEEeeCCC-cEEEEcCCCCeeEEEeecCCcceeEEEEeeCCCeEEEeeCCCeEEEEEcCC
Q psy18231 159 RELFVLSGLMHTRFPVDGSYCLTCGSDK-KIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTT 237 (540)
Q Consensus 159 ~~~~h~~~v~~v~~spdg~~lat~~~dg-~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~ 237 (540)
...+|.+.|.-..+.-+++-++.|..|| .+-|+|..+++. +.+...-+.|.++..+|+|++++.+.....+.+.|+++
T Consensus 354 iqv~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~-kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididn 432 (668)
T COG4946 354 IQVGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEV-KRIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDN 432 (668)
T ss_pred EEcCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceE-EEeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecC
Confidence 4567888899999999999999999999 899999877764 45556788999999999999999999999999999999
Q ss_pred CceeEeccccCCceeEEEECCCCCEEEEecCCC----cEEEEEecCCCC
Q psy18231 238 GQPVRRWREHASKVTCVKFNEDSSVVISGSQDN----TVMMWDVKSRSH 282 (540)
Q Consensus 238 ~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg----~i~iwd~~~~~~ 282 (540)
|.....-+...+-|+.+.|+|+++++|-+--+| .|+++|+..++.
T Consensus 433 gnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Ki 481 (668)
T COG4946 433 GNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKI 481 (668)
T ss_pred CCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeE
Confidence 987666666778899999999999999887665 689999988763
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.7e-08 Score=107.84 Aligned_cols=272 Identities=10% Similarity=0.074 Sum_probs=150.9
Q ss_pred EEEEeCCC-CCEEEEeeCCCcEEEEcCCCCeeEEEeec--C------------CcceeEEEEeeCCCeEEEe-eCCCeEE
Q psy18231 168 MHTRFPVD-GSYCLTCGSDKKIKLWNPYRNLLLKTYGG--H------------AHEVNDATAACDSSQIASG-ASDKSVI 231 (540)
Q Consensus 168 ~~v~~spd-g~~lat~~~dg~i~iwd~~~~~~~~~~~~--h------------~~~v~~l~~sp~~~~l~s~-s~dg~i~ 231 (540)
..++++++ ++..++-+.++.|++||.. +..+..+.+ . -.....+++.++++.|+.+ ..++.|+
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~-G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir 649 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLD-GNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALR 649 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCC-CCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEE
Confidence 46788875 5556666678899999975 444444432 1 1235789999988766555 4457899
Q ss_pred EEEcCCCceeEecccc-----------------CCceeEEEECC-CCCEEEEecCCCcEEEEEecCCCCCCcchhhhhHh
Q psy18231 232 LWEVTTGQPVRRWREH-----------------ASKVTCVKFNE-DSSVVISGSQDNTVMMWDVKSRSHHPIQVRCLNEA 293 (540)
Q Consensus 232 iwd~~~~~~~~~~~~h-----------------~~~v~~~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 293 (540)
++|+.++.. .++.+- -.....++++| ++..+++.+.++.|++||..++......
T Consensus 650 ~id~~~~~V-~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~------- 721 (1057)
T PLN02919 650 EIDFVNETV-RTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFS------- 721 (1057)
T ss_pred EEecCCCEE-EEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEe-------
Confidence 999876543 222110 12346799999 5566677777889999998665410000
Q ss_pred hhhcCCceeEEEEeecccccccccCceeeEEEeeeecccccceeeeeeccceeEEEeecccceecccccccccccchhhh
Q psy18231 294 LKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQA 373 (540)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (540)
.++... ...+.. .
T Consensus 722 -------------------------------------------------G~G~~~--~~~g~~----------------~ 734 (1057)
T PLN02919 722 -------------------------------------------------GDGYER--NLNGSS----------------G 734 (1057)
T ss_pred -------------------------------------------------cCCccc--cCCCCc----------------c
Confidence 000000 000000 0
Q ss_pred hhcccccEEEEEecC--C-eeEeeeCCCeEEEEeCCCCceEEeeeCCceEEEEEecCCcEEEeecCCCeEEEEeccccch
Q psy18231 374 LKEARDSITSVHVSD--H-EILTASLDCRIRRYDIRTGNLVTDYVGEPIVDACFTRDCQCILTCSTDECLRLFDKATGEL 450 (540)
Q Consensus 374 ~~~~~~~v~~l~~~~--~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~ 450 (540)
....-.....++++| + ++++-+.++.|++||++++.......+.++. + +....+.+......
T Consensus 735 ~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~-----~----------~~l~~fG~~dG~g~ 799 (1057)
T PLN02919 735 TSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTF-----S----------DNLFKFGDHDGVGS 799 (1057)
T ss_pred ccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEeccccc-----C----------cccccccCCCCchh
Confidence 000112234566666 3 3444555677777777654321110000000 0 00001111000000
Q ss_pred hhhhccCcCCcceEEEEecCCCCeEEEeeCCCcEEEEEecCCcceeEEEec-----------ccceeeeEEEEcCCCcEE
Q psy18231 451 LEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHS-----------VGKAVVNSLCSHPTRKHI 519 (540)
Q Consensus 451 ~~~~~~~~~~v~~~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~-----------~~~~~v~~l~~s~d~~~l 519 (540)
...+. | -..+ +++++|..+++-+.++.|++||..++......... +.-.....++++++|+++
T Consensus 800 ~~~l~-~---P~Gv--avd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~ly 873 (1057)
T PLN02919 800 EVLLQ-H---PLGV--LCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLF 873 (1057)
T ss_pred hhhcc-C---Ccee--eEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEE
Confidence 00111 1 1234 78899998888899999999998776554332210 122357889999999988
Q ss_pred Eeec-CCeeEEEEccccc
Q psy18231 520 MSAC-GNNVKLWTAEEDY 536 (540)
Q Consensus 520 ~s~~-d~~i~iw~~~~~~ 536 (540)
++-+ ++.|++||++++.
T Consensus 874 VaDt~Nn~Irvid~~~~~ 891 (1057)
T PLN02919 874 VADTNNSLIRYLDLNKGE 891 (1057)
T ss_pred EEECCCCEEEEEECCCCc
Confidence 8877 9999999998753
|
|
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=99.19 E-value=4.6e-08 Score=94.60 Aligned_cols=311 Identities=10% Similarity=0.019 Sum_probs=173.0
Q ss_pred CCCEEEEeeCCCcEEEEcCCCCeeEEEeecCCc----------cee-EEEEeeCCCeEEEeeCCCeEEEEEcCCCceeEe
Q psy18231 175 DGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAH----------EVN-DATAACDSSQIASGASDKSVILWEVTTGQPVRR 243 (540)
Q Consensus 175 dg~~lat~~~dg~i~iwd~~~~~~~~~~~~h~~----------~v~-~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~ 243 (540)
.+..+++++.+|.+.-+|.++|+.+.+...... .+. .+.. ++..++.++.+|.+..+|.++|+.+..
T Consensus 68 ~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v--~~~~v~v~~~~g~l~ald~~tG~~~W~ 145 (394)
T PRK11138 68 AYNKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTV--AGGKVYIGSEKGQVYALNAEDGEVAWQ 145 (394)
T ss_pred ECCEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEE--ECCEEEEEcCCCEEEEEECCCCCCccc
Confidence 355777788889999999999998877643220 000 1111 355677888899999999999998887
Q ss_pred ccccCCceeEEEECCCCCEEEEecCCCcEEEEEecCCCCCCcchhhhhHhhhhcCCceeEEEEeecccccccccCceeeE
Q psy18231 244 WREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHLSNGLLTKL 323 (540)
Q Consensus 244 ~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (540)
.+........... .+..++.++.+|.+..+|..+++..-....... .... .+. ...
T Consensus 146 ~~~~~~~~ssP~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~--------------------~~~~-~~~-~sP 201 (394)
T PRK11138 146 TKVAGEALSRPVV--SDGLVLVHTSNGMLQALNESDGAVKWTVNLDVP--------------------SLTL-RGE-SAP 201 (394)
T ss_pred ccCCCceecCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeecCCCC--------------------cccc-cCC-CCC
Confidence 6543221111111 244677777889999999998873211100000 0000 000 000
Q ss_pred EEeeeecccccceeeeeeccceeEEEeecccceecccccccccccc-hhhhhhcccccEEEEEecCCeeEeeeCCCeEEE
Q psy18231 324 VFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNS-CFQALKEARDSITSVHVSDHEILTASLDCRIRR 402 (540)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~v~~l~~~~~~l~~~~~dg~i~i 402 (540)
.. ..+ .......++.+...+.......|.......... ....+.. ...+-....+.+++++.+|.+..
T Consensus 202 ~v------~~~--~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~---~~~sP~v~~~~vy~~~~~g~l~a 270 (394)
T PRK11138 202 AT------AFG--GAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVD---VDTTPVVVGGVVYALAYNGNLVA 270 (394)
T ss_pred EE------ECC--EEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccc---cCCCcEEECCEEEEEEcCCeEEE
Confidence 00 000 011122233444444444444443221110000 0000000 00111122467778888999999
Q ss_pred EeCCCCceEEeeeCCceEEEEEecCCcEEEeecCCCeEEEEeccccchhhhhccCcCC-cceEEEEecCCCCeEEEeeCC
Q psy18231 403 YDIRTGNLVTDYVGEPIVDACFTRDCQCILTCSTDECLRLFDKATGELLEEYKGHKSG-DFRIECCLDSKDSQIFCGSSD 481 (540)
Q Consensus 403 wd~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~-v~~~~~~~s~~~~~l~s~s~d 481 (540)
+|..+++.+.+..-.....+. .++..++.++.+|.+..+|..+++.+-........ .... .. .+..|+.++.|
T Consensus 271 ld~~tG~~~W~~~~~~~~~~~--~~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp--~v--~~g~l~v~~~~ 344 (394)
T PRK11138 271 LDLRSGQIVWKREYGSVNDFA--VDGGRIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAP--VL--YNGYLVVGDSE 344 (394)
T ss_pred EECCCCCEEEeecCCCccCcE--EECCEEEEEcCCCeEEEEECCCCcEEEcccccCCCcccCC--EE--ECCEEEEEeCC
Confidence 999999887655432222222 24567777888999999999998765443221111 1111 11 25678899999
Q ss_pred CcEEEEEecCCcceeEEEecccceeee-EEEEcCCCcEEEeec-CCeeEEEEc
Q psy18231 482 GKIYKWQLVDSSQISTLIHSVGKAVVN-SLCSHPTRKHIMSAC-GNNVKLWTA 532 (540)
Q Consensus 482 g~i~iwd~~~~~~~~~~~~~~~~~~v~-~l~~s~d~~~l~s~~-d~~i~iw~~ 532 (540)
|.|++.|..+|+.+...+. ....+. ...+. ++ .|+.++ ||.|..++.
T Consensus 345 G~l~~ld~~tG~~~~~~~~--~~~~~~s~P~~~-~~-~l~v~t~~G~l~~~~~ 393 (394)
T PRK11138 345 GYLHWINREDGRFVAQQKV--DSSGFLSEPVVA-DD-KLLIQARDGTVYAITR 393 (394)
T ss_pred CEEEEEECCCCCEEEEEEc--CCCcceeCCEEE-CC-EEEEEeCCceEEEEeC
Confidence 9999999999998887763 222222 22232 34 566666 999988765
|
|
| >KOG4190|consensus | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.1e-10 Score=107.62 Aligned_cols=280 Identities=16% Similarity=0.192 Sum_probs=190.3
Q ss_pred eeeeecCeEEEEeCCCCCEEEEeeCCCcEEEEcCCC-------CeeEEEeecCCcceeEEEEeeCCCeEEEeeCCCeEEE
Q psy18231 160 ELFVLSGLMHTRFPVDGSYCLTCGSDKKIKLWNPYR-------NLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVIL 232 (540)
Q Consensus 160 ~~~h~~~v~~v~~spdg~~lat~~~dg~i~iwd~~~-------~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~dg~i~i 232 (540)
..+|+..|..++--.+.+-+++++.|.+|++|.++. ..+..+++.|+.+|.++.|..+.++++++ ||-|.+
T Consensus 731 f~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~giHl 808 (1034)
T KOG4190|consen 731 FTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--DGGIHL 808 (1034)
T ss_pred ccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--cCccee
Confidence 357999999988777777899999999999998753 34677889999999999999988888765 688999
Q ss_pred EEcCCCceeEecc--ccCCceeEEEECC--CCCEEEEe-cCCCcEEEEEecCCCCCCcchhhhhHhhhhcCCceeEEEEe
Q psy18231 233 WEVTTGQPVRRWR--EHASKVTCVKFNE--DSSVVISG-SQDNTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSL 307 (540)
Q Consensus 233 wd~~~~~~~~~~~--~h~~~v~~~~~~~--~~~~l~s~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (540)
||.--++++.... ...+.+..+...+ +...++.+ +...+|+++|.+..+.....
T Consensus 809 WDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~--------------------- 867 (1034)
T KOG4190|consen 809 WDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCEL--------------------- 867 (1034)
T ss_pred ecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeE---------------------
Confidence 9998887765432 1122333333334 34444444 67889999998876521110
Q ss_pred ecccccccccCceeeEEEeeeecccccceeeeeeccceeEEEeecccceecccccccccccchhhhhhcccccEEEEEec
Q psy18231 308 VKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEARDSITSVHVS 387 (540)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~ 387 (540)
. +....+.+..+.+++..
T Consensus 868 ----------------------------------------k----------------------Vcna~~Pna~~R~iaVa 885 (1034)
T KOG4190|consen 868 ----------------------------------------K----------------------VCNAPGPNALTRAIAVA 885 (1034)
T ss_pred ----------------------------------------E----------------------eccCCCCchheeEEEec
Confidence 0 00112334566777776
Q ss_pred C--CeeEeeeCCCeEEEEeCCCCceEEeeeCCc--eEEEEEecCCcEEEeecCCCeEEE-EeccccchhhhhccCcCCcc
Q psy18231 388 D--HEILTASLDCRIRRYDIRTGNLVTDYVGEP--IVDACFTRDCQCILTCSTDECLRL-FDKATGELLEEYKGHKSGDF 462 (540)
Q Consensus 388 ~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~--i~~~~~sp~~~~l~~~~~dg~i~i-~d~~~~~~~~~~~~~~~~v~ 462 (540)
+ ++++++-.+|.|.+.|.++|+.+..+..-. ...++ .|..+.|+....|.++.+ |-...+....+.+....+..
T Consensus 886 ~~GN~lAa~LSnGci~~LDaR~G~vINswrpmecdllqla-apsdq~L~~saldHslaVnWhaldgimh~q~kpppepah 964 (1034)
T KOG4190|consen 886 DKGNKLAAALSNGCIAILDARNGKVINSWRPMECDLLQLA-APSDQALAQSALDHSLAVNWHALDGIMHLQDKPPPEPAH 964 (1034)
T ss_pred cCcchhhHHhcCCcEEEEecCCCceeccCCcccchhhhhc-CchhHHHHhhcccceeEeeehhcCCeeeeccCCCCcchh
Confidence 6 899999999999999999999887765422 11222 356677888888889988 88777766555554444432
Q ss_pred eEEEEecCCCCeEEEeeCCCcEEEEEecC----CcceeEEEecccceeeeEEEEcCCCcEEEeec-CCeeEE
Q psy18231 463 RIECCLDSKDSQIFCGSSDGKIYKWQLVD----SSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC-GNNVKL 529 (540)
Q Consensus 463 ~~~~~~s~~~~~l~s~s~dg~i~iwd~~~----~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~-d~~i~i 529 (540)
.+ -.-|.-|+++...+.+.+|.-.. ...+..++.....+..++++--|-..-+..|. .|.|.+
T Consensus 965 fl----qsvgpSLV~a~~Gn~lgVYad~a~~ha~stitKiR~d~f~G~lTala~LPLN~afLaGne~G~IaL 1032 (1034)
T KOG4190|consen 965 FL----QSVGPSLVTAQNGNILGVYADSAELHAESTITKIRPDEFPGTLTALAPLPLNCAFLAGNEHGAIAL 1032 (1034)
T ss_pred hh----hccCceeEEeccCcEEEEEecchhhhhhhhhccccccccCCccceeeeccccchhhccCCCCceee
Confidence 22 12355688887777888886211 12233444334557788888888776666777 777765
|
|
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.4e-08 Score=97.91 Aligned_cols=265 Identities=14% Similarity=0.147 Sum_probs=155.1
Q ss_pred CCCEEEEeeCCCcEEEEcCCCCeeEEEeecCCcceeEEEEeeCCCeEEEeeCCCeEEEEEcCCCceeEeccccCCcee--
Q psy18231 175 DGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPVRRWREHASKVT-- 252 (540)
Q Consensus 175 dg~~lat~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~-- 252 (540)
++..++.++.+|.+..+|..+|+.+...... +.+.+.-.. .+..++.++.++.+..||.++|+.+..++.....+.
T Consensus 104 ~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~-~~~~~~p~v-~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~ 181 (377)
T TIGR03300 104 DGGLVFVGTEKGEVIALDAEDGKELWRAKLS-SEVLSPPLV-ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLR 181 (377)
T ss_pred cCCEEEEEcCCCEEEEEECCCCcEeeeeccC-ceeecCCEE-ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeec
Confidence 5667888888999999999999988776532 233221111 345677788899999999999998877654322111
Q ss_pred ---EEEECCCCCEEEEecCCCcEEEEEecCCCCCCcchhhhhHhhhhcCCceeEEEEeecccccccccCceeeEEEeeee
Q psy18231 253 ---CVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRC 329 (540)
Q Consensus 253 ---~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (540)
.... .+..++.+..+|.+..+|+++++..-.. ..... .. ......+. .......
T Consensus 182 ~~~sp~~--~~~~v~~~~~~g~v~ald~~tG~~~W~~--~~~~~----~g-~~~~~~~~---------~~~~~p~----- 238 (377)
T TIGR03300 182 GSASPVI--ADGGVLVGFAGGKLVALDLQTGQPLWEQ--RVALP----KG-RTELERLV---------DVDGDPV----- 238 (377)
T ss_pred CCCCCEE--ECCEEEEECCCCEEEEEEccCCCEeeee--ccccC----CC-CCchhhhh---------ccCCccE-----
Confidence 1111 1246778888899999999888631111 00000 00 00000000 0000000
Q ss_pred cccccceeeeeeccceeEEEeecccceecccccccccccchhhhhhcccccEEEEEecCCeeEeeeCCCeEEEEeCCCCc
Q psy18231 330 KYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEARDSITSVHVSDHEILTASLDCRIRRYDIRTGN 409 (540)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~dg~i~iwd~~~~~ 409 (540)
...+ .......++.+..++.......|.... ..........+.+++++.+|.+..+|..+++
T Consensus 239 -~~~~--~vy~~~~~g~l~a~d~~tG~~~W~~~~---------------~~~~~p~~~~~~vyv~~~~G~l~~~d~~tG~ 300 (377)
T TIGR03300 239 -VDGG--QVYAVSYQGRVAALDLRSGRVLWKRDA---------------SSYQGPAVDDNRLYVTDADGVVVALDRRSGS 300 (377)
T ss_pred -EECC--EEEEEEcCCEEEEEECCCCcEEEeecc---------------CCccCceEeCCEEEEECCCCeEEEEECCCCc
Confidence 0000 111122344555555544444443220 0112233455788888999999999999998
Q ss_pred eEEeeeC---CceEEEEEecCCcEEEeecCCCeEEEEeccccchhhhhccCcCCcceEEEEecCCCCeEEEeeCCCcEEE
Q psy18231 410 LVTDYVG---EPIVDACFTRDCQCILTCSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYK 486 (540)
Q Consensus 410 ~~~~~~~---~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~s~~~~~l~s~s~dg~i~i 486 (540)
.+.+... ....+... .+..+++++.+|.++++|..+++.+.+++.+...+...- ++. ++.|+.++.||.|+.
T Consensus 301 ~~W~~~~~~~~~~ssp~i--~g~~l~~~~~~G~l~~~d~~tG~~~~~~~~~~~~~~~sp-~~~--~~~l~v~~~dG~l~~ 375 (377)
T TIGR03300 301 ELWKNDELKYRQLTAPAV--VGGYLVVGDFEGYLHWLSREDGSFVARLKTDGSGIASPP-VVV--GDGLLVQTRDGDLYA 375 (377)
T ss_pred EEEccccccCCccccCEE--ECCEEEEEeCCCEEEEEECCCCCEEEEEEcCCCccccCC-EEE--CCEEEEEeCCceEEE
Confidence 8765532 22222222 466888999999999999999999888876654332210 222 345889999999987
Q ss_pred E
Q psy18231 487 W 487 (540)
Q Consensus 487 w 487 (540)
+
T Consensus 376 ~ 376 (377)
T TIGR03300 376 F 376 (377)
T ss_pred e
Confidence 5
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >KOG0882|consensus | Back alignment and domain information |
|---|
Probab=99.16 E-value=9.3e-10 Score=99.06 Aligned_cols=248 Identities=15% Similarity=0.151 Sum_probs=173.4
Q ss_pred eeeecCeEEEEeCCCCCEEEEeeCCCcEEEEcCCC--C-eeEEEeecCCcceeEEEEeeCCCeEEEeeC-CCeEEEEEcC
Q psy18231 161 LFVLSGLMHTRFPVDGSYCLTCGSDKKIKLWNPYR--N-LLLKTYGGHAHEVNDATAACDSSQIASGAS-DKSVILWEVT 236 (540)
Q Consensus 161 ~~h~~~v~~v~~spdg~~lat~~~dg~i~iwd~~~--~-~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~-dg~i~iwd~~ 236 (540)
..|.+.|+.+.-. -.+++.+++.||.++.|.-.. + +.+..+..|-+.|.+++.+.++.++.|.+. |..++++|++
T Consensus 6 ymhrd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvE 84 (558)
T KOG0882|consen 6 YMHRDVITHVFPT-KAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVE 84 (558)
T ss_pred hcccceeeeEeee-hhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEee
Confidence 4577777777544 456899999999999998543 2 445556778899999999999999999888 9999999998
Q ss_pred CCceeEeccc--cCCceeEEEECCC-C-CEEE-EecCCCcEEEEEecCCCCCCcchhhhhHhhhhcCCceeEEEEeeccc
Q psy18231 237 TGQPVRRWRE--HASKVTCVKFNED-S-SVVI-SGSQDNTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKST 311 (540)
Q Consensus 237 ~~~~~~~~~~--h~~~v~~~~~~~~-~-~~l~-s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (540)
+-..+..++- -.+.+. ...++. . ..++ +.-.+|.+.++|-....+...
T Consensus 85 n~DminmiKL~~lPg~a~-wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~-------------------------- 137 (558)
T KOG0882|consen 85 NFDMINMIKLVDLPGFAE-WVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDG-------------------------- 137 (558)
T ss_pred ccchhhhcccccCCCceE-EecCCCCeeeeEEeecccCCCcEEECCcCCcCccc--------------------------
Confidence 8665533321 112221 112221 1 1233 334568888888665432111
Q ss_pred ccccccCceeeEEEeeeecccccceeeeeeccceeEEEeecccceecccccccccccchhhhhhcccccEEEEEecC--C
Q psy18231 312 KNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEARDSITSVHVSD--H 389 (540)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~--~ 389 (540)
....-|..+|..+.+++ +
T Consensus 138 ------------------------------------------------------------~fkklH~sPV~~i~y~qa~D 157 (558)
T KOG0882|consen 138 ------------------------------------------------------------YFKKLHFSPVKKIRYNQAGD 157 (558)
T ss_pred ------------------------------------------------------------eecccccCceEEEEeecccc
Confidence 13345788999999998 7
Q ss_pred eeEeeeCCCeEEEEeCCC------CceEEeeeC-----------CceEEEEEecCCcEEEeecCCCeEEEEeccccchhh
Q psy18231 390 EILTASLDCRIRRYDIRT------GNLVTDYVG-----------EPIVDACFTRDCQCILTCSTDECLRLFDKATGELLE 452 (540)
Q Consensus 390 ~l~~~~~dg~i~iwd~~~------~~~~~~~~~-----------~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~ 452 (540)
.+++....|-|.-|..+. .+....+.. ....++.|+|+|..+.+-+.|..|++++.++++.++
T Consensus 158 s~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvq 237 (558)
T KOG0882|consen 158 SAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQ 237 (558)
T ss_pred ceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhh
Confidence 788888889999998873 112222211 357899999999999999999999999999987765
Q ss_pred hhcc--------------------------------CcCCcceEEEEecCCCCeEEEeeCCCcEEEEEecCCcceeEE
Q psy18231 453 EYKG--------------------------------HKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTL 498 (540)
Q Consensus 453 ~~~~--------------------------------~~~~v~~~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~ 498 (540)
.+.. |.. ......+|...|++|+-|+-=| |++.++.+++..+.+
T Consensus 238 eiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~-~~~~~~~fdes~~flly~t~~g-ikvin~~tn~v~ri~ 313 (558)
T KOG0882|consen 238 EIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGS-TVGTNAVFDESGNFLLYGTILG-IKVINLDTNTVVRIL 313 (558)
T ss_pred hhhccchhhhhccccccccceeehhhhhhHHhhHhhhcC-cccceeEEcCCCCEEEeeccee-EEEEEeecCeEEEEe
Confidence 4432 222 1223347999999999888765 899999888777665
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.1e-07 Score=101.81 Aligned_cols=115 Identities=9% Similarity=0.117 Sum_probs=78.1
Q ss_pred CeEEEEeCCCCCEEEEeeC-CCcEEEEcCCCCeeEEEeecC-----------------CcceeEEEEee-CCCeEEEeeC
Q psy18231 166 GLMHTRFPVDGSYCLTCGS-DKKIKLWNPYRNLLLKTYGGH-----------------AHEVNDATAAC-DSSQIASGAS 226 (540)
Q Consensus 166 ~v~~v~~spdg~~lat~~~-dg~i~iwd~~~~~~~~~~~~h-----------------~~~v~~l~~sp-~~~~l~s~s~ 226 (540)
....++++++++.|+++.. .+.|+++|..++. +.++.+- -..-+.++++| ++..+++.+.
T Consensus 625 ~P~GIavd~~gn~LYVaDt~n~~Ir~id~~~~~-V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~ 703 (1057)
T PLN02919 625 RPQGLAYNAKKNLLYVADTENHALREIDFVNET-VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAG 703 (1057)
T ss_pred CCcEEEEeCCCCEEEEEeCCCceEEEEecCCCE-EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECC
Confidence 4588999999887766544 5789999987764 3333210 11235799999 5666777788
Q ss_pred CCeEEEEEcCCCceeEec--------cc------cCCceeEEEECCCCCEE-EEecCCCcEEEEEecCCC
Q psy18231 227 DKSVILWEVTTGQPVRRW--------RE------HASKVTCVKFNEDSSVV-ISGSQDNTVMMWDVKSRS 281 (540)
Q Consensus 227 dg~i~iwd~~~~~~~~~~--------~~------h~~~v~~~~~~~~~~~l-~s~~~dg~i~iwd~~~~~ 281 (540)
++.|++||..++...... .+ .-.....++++|+++.| ++-+.++.|++||+.++.
T Consensus 704 ~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~ 773 (1057)
T PLN02919 704 QHQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGG 773 (1057)
T ss_pred CCeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCc
Confidence 899999998776542110 01 11245679999998844 455667899999987654
|
|
| >KOG4532|consensus | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.1e-08 Score=86.05 Aligned_cols=236 Identities=10% Similarity=0.009 Sum_probs=151.1
Q ss_pred EEEEeCC-----CCCEEEEeeCCCcEEEEcCCCCeeEEEe-ecCCcceeEEEEee-CCCeEEEeeCCCeEEEEEcCCCce
Q psy18231 168 MHTRFPV-----DGSYCLTCGSDKKIKLWNPYRNLLLKTY-GGHAHEVNDATAAC-DSSQIASGASDKSVILWEVTTGQP 240 (540)
Q Consensus 168 ~~v~~sp-----dg~~lat~~~dg~i~iwd~~~~~~~~~~-~~h~~~v~~l~~sp-~~~~l~s~s~dg~i~iwd~~~~~~ 240 (540)
..+.|-| .-.+||.||..|...+|...+.+....+ ..|...|+-+.=.. ....+..++.|.++++.+++-+..
T Consensus 71 ~g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~ 150 (344)
T KOG4532|consen 71 TGMTFTPGSFINKCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSN 150 (344)
T ss_pred ecccccchHhhccccEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCcc
Confidence 3455555 3458999999999999999866543333 33444443222111 223477788899999998866543
Q ss_pred eEeccccCCceeEEEECCCCCEEEEecCCCcEEEEEecCCCCCCcchhhhhHhhhhcCCceeEEEEeecccccccccCce
Q psy18231 241 VRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHLSNGLL 320 (540)
Q Consensus 241 ~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (540)
...+.-..-.+.++++++|++++++.+....|..|.+..........
T Consensus 151 ~~~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~--------------------------------- 197 (344)
T KOG4532|consen 151 KFAVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENI--------------------------------- 197 (344)
T ss_pred cceeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeee---------------------------------
Confidence 33221112238899999999999999999999999987654211110
Q ss_pred eeEEEeeeecccccceeeeeeccceeEEEeecccceecccccccccccchhhhhhcccccEEEEEecC--CeeEeeeCCC
Q psy18231 321 TKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEARDSITSVHVSD--HEILTASLDC 398 (540)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~--~~l~~~~~dg 398 (540)
......+.-.+.+|+. ..+|++..||
T Consensus 198 ----------------------------------------------------~~a~t~D~gF~~S~s~~~~~FAv~~Qdg 225 (344)
T KOG4532|consen 198 ----------------------------------------------------YEAPTSDHGFYNSFSENDLQFAVVFQDG 225 (344)
T ss_pred ----------------------------------------------------EecccCCCceeeeeccCcceEEEEecCC
Confidence 1112233345667776 7899999999
Q ss_pred eEEEEeCCCCceEEee-------eCCceEEEEEecCCc--EEEeecCCCeEEEEeccccchhhhh-------ccCc-CCc
Q psy18231 399 RIRRYDIRTGNLVTDY-------VGEPIVDACFTRDCQ--CILTCSTDECLRLFDKATGELLEEY-------KGHK-SGD 461 (540)
Q Consensus 399 ~i~iwd~~~~~~~~~~-------~~~~i~~~~~sp~~~--~l~~~~~dg~i~i~d~~~~~~~~~~-------~~~~-~~v 461 (540)
++.|||++........ +.+.+..+.|++.|. +|...-.-+.+.+.|+++++....+ ..|. ..+
T Consensus 226 ~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~i 305 (344)
T KOG4532|consen 226 TCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHI 305 (344)
T ss_pred cEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCcccccccccccc
Confidence 9999999976543322 225799999998664 4555555678999999987543322 2222 224
Q ss_pred ceEEEEecCCCCeEEEeeCCCcEEEEEecC
Q psy18231 462 FRIECCLDSKDSQIFCGSSDGKIYKWQLVD 491 (540)
Q Consensus 462 ~~~~~~~s~~~~~l~s~s~dg~i~iwd~~~ 491 (540)
... +|+.++.-+.+.+++ .+.-|++..
T Consensus 306 fgt--~f~~~n~s~~v~~e~-~~ae~ni~s 332 (344)
T KOG4532|consen 306 FGT--NFNNENESNDVKNEL-QGAEYNILS 332 (344)
T ss_pred ccc--cccCCCcccccccch-hhheeeccc
Confidence 444 677777666666554 345555443
|
|
| >KOG1832|consensus | Back alignment and domain information |
|---|
Probab=99.13 E-value=7.3e-11 Score=114.58 Aligned_cols=217 Identities=16% Similarity=0.187 Sum_probs=159.2
Q ss_pred eeEEEeecCCcceeEEEEeeCCCeEEEeeCCCeEEEEEcCCCceeEeccccCCceeEEEECCCCCEEEEecCCC--cEEE
Q psy18231 197 LLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDN--TVMM 274 (540)
Q Consensus 197 ~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg--~i~i 274 (540)
+..+++..|+...+|++|+-+.++|+.|+..|.|+++++.+|.......+|.++|+-+.-+.+|..+++.+.-. -..+
T Consensus 1092 r~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaL 1171 (1516)
T KOG1832|consen 1092 RSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSAL 1171 (1516)
T ss_pred ccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHHH
Confidence 44566778899999999999999999999999999999999999999999999999999999998777655432 3667
Q ss_pred EEecCCCCCCcchhhhhHhhhhcCCceeEEEEeecccccccccCceeeEEEeeeecccccceeeeeeccceeEEEeeccc
Q psy18231 275 WDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLG 354 (540)
Q Consensus 275 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (540)
|++.+--. +.
T Consensus 1172 W~~~s~~~-~~--------------------------------------------------------------------- 1181 (1516)
T KOG1832|consen 1172 WDASSTGG-PR--------------------------------------------------------------------- 1181 (1516)
T ss_pred hccccccC-cc---------------------------------------------------------------------
Confidence 88754210 00
Q ss_pred ceecccccccccccchhhhhhcccccEEEEEecC--CeeEeeeCCCeEEEEeCCCCceEEeeeC------CceEEEEEec
Q psy18231 355 STQIGDVTPISIHNSCFQALKEARDSITSVHVSD--HEILTASLDCRIRRYDIRTGNLVTDYVG------EPIVDACFTR 426 (540)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~------~~i~~~~~sp 426 (540)
+.+ ..-.++.|+. ..-+.|+......+||++++..+.++-. ..-+++.|+|
T Consensus 1182 -----------------Hsf----~ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP 1240 (1516)
T KOG1832|consen 1182 -----------------HSF----DEDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSP 1240 (1516)
T ss_pred -----------------ccc----cccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCC
Confidence 011 1234566666 3344555556788999999988777432 2347889999
Q ss_pred CCcEEEeecCCCeEEEEeccccchhhhhccCcCCcceEEEEecCCCCeEEEeeCCCcEEEEEecCCcceeEEEeccccee
Q psy18231 427 DCQCILTCSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAV 506 (540)
Q Consensus 427 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~ 506 (540)
+..+++ .|| .+||.+..+.++.|...+..+.. .|+|.|..++.-++ |||+++.+.+.... .- .
T Consensus 1241 ~D~LIl---ndG--vLWDvR~~~aIh~FD~ft~~~~G---~FHP~g~eVIINSE-----IwD~RTF~lLh~VP--~L--d 1303 (1516)
T KOG1832|consen 1241 CDTLIL---NDG--VLWDVRIPEAIHRFDQFTDYGGG---GFHPSGNEVIINSE-----IWDMRTFKLLHSVP--SL--D 1303 (1516)
T ss_pred CcceEe---eCc--eeeeeccHHHHhhhhhheecccc---cccCCCceEEeech-----hhhhHHHHHHhcCc--cc--c
Confidence 988776 355 38999999999988766644433 59999999988875 89999988776654 11 1
Q ss_pred eeEEEEcCCCcEEEe
Q psy18231 507 VNSLCSHPTRKHIMS 521 (540)
Q Consensus 507 v~~l~~s~d~~~l~s 521 (540)
-..+.|...|..+..
T Consensus 1304 qc~VtFNstG~VmYa 1318 (1516)
T KOG1832|consen 1304 QCAVTFNSTGDVMYA 1318 (1516)
T ss_pred ceEEEeccCccchhh
Confidence 234566666665543
|
|
| >KOG0309|consensus | Back alignment and domain information |
|---|
Probab=99.13 E-value=4.1e-10 Score=107.36 Aligned_cols=282 Identities=16% Similarity=0.235 Sum_probs=178.8
Q ss_pred eeeecCeEEEEeCCCCCEEEEeeCCCcEEEEcCCCC-eeEEEeecC--CcceeEEEEeeCC--CeEEEeeCCCeEEEEEc
Q psy18231 161 LFVLSGLMHTRFPVDGSYCLTCGSDKKIKLWNPYRN-LLLKTYGGH--AHEVNDATAACDS--SQIASGASDKSVILWEV 235 (540)
Q Consensus 161 ~~h~~~v~~v~~spdg~~lat~~~dg~i~iwd~~~~-~~~~~~~~h--~~~v~~l~~sp~~--~~l~s~s~dg~i~iwd~ 235 (540)
+...+++.++..+|.|+-+|.++.-|.. +.|+... .+..-+. | .-.|-...|+|.. .+-++......-.+|++
T Consensus 21 l~v~~~~~a~si~p~grdi~lAsr~gl~-i~dld~p~~ppr~l~-h~tpw~vad~qws~h~a~~~wiVsts~qkaiiwnl 98 (1081)
T KOG0309|consen 21 LKVDGGFNAVSINPSGRDIVLASRQGLY-IIDLDDPFTPPRWLH-HITPWQVADVQWSPHPAKPYWIVSTSNQKAIIWNL 98 (1081)
T ss_pred EEecCcccceeeccccchhhhhhhcCeE-EEeccCCCCCceeee-ccCcchhcceecccCCCCceeEEecCcchhhhhhh
Confidence 4456889999999999999999877655 5565543 3332222 3 2346677888732 33333334455668988
Q ss_pred CCC---ceeEeccccCCceeEEEECCC-CCEEEEecCCCcEEEEEecCCCCCCcchhhhhHhhhhcCCceeEEEEeeccc
Q psy18231 236 TTG---QPVRRWREHASKVTCVKFNED-SSVVISGSQDNTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKST 311 (540)
Q Consensus 236 ~~~---~~~~~~~~h~~~v~~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (540)
... ..-..+.+|...|+.+.|+|+ ...+++++.|-.+..||+++... ++.
T Consensus 99 A~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~-p~y------------------------- 152 (1081)
T KOG0309|consen 99 AKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHR-PFY------------------------- 152 (1081)
T ss_pred hcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCc-cee-------------------------
Confidence 543 333456799999999999994 46899999999999999987652 100
Q ss_pred ccccccCceeeEEEeeeecccccceeeeeeccceeEEEeecccceecccccccccccchhhhhhcccccEEEEEecC--C
Q psy18231 312 KNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEARDSITSVHVSD--H 389 (540)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~--~ 389 (540)
....-......++|+- .
T Consensus 153 -------------------------------------------------------------s~~~w~s~asqVkwnyk~p 171 (1081)
T KOG0309|consen 153 -------------------------------------------------------------STSSWRSAASQVKWNYKDP 171 (1081)
T ss_pred -------------------------------------------------------------eeecccccCceeeecccCc
Confidence 1111123334566654 4
Q ss_pred eeEeeeCCCeEEEEeCCCCc-eEEeeeC--CceEEEEEec-CCcEEEeecCCCeEEEEeccccchhhh-hccCcCCcceE
Q psy18231 390 EILTASLDCRIRRYDIRTGN-LVTDYVG--EPIVDACFTR-DCQCILTCSTDECLRLFDKATGELLEE-YKGHKSGDFRI 464 (540)
Q Consensus 390 ~l~~~~~dg~i~iwd~~~~~-~~~~~~~--~~i~~~~~sp-~~~~l~~~~~dg~i~i~d~~~~~~~~~-~~~~~~~v~~~ 464 (540)
.+++.+....|++||++.+. ++..+++ ..++.+.|.. ....+.+.+.|++|+.||......... ......+++.-
T Consensus 172 ~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~ 251 (1081)
T KOG0309|consen 172 NVLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRG 251 (1081)
T ss_pred chhhhccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceeccccCcceec
Confidence 45555667789999999764 4556655 3567777754 345678889999999999875432211 11122334433
Q ss_pred EEEecCCCC--eEEEeeCCCcEE---------EEEecC-CcceeEEEecccceeeeEEEEcCCC----------cEEEee
Q psy18231 465 ECCLDSKDS--QIFCGSSDGKIY---------KWQLVD-SSQISTLIHSVGKAVVNSLCSHPTR----------KHIMSA 522 (540)
Q Consensus 465 ~~~~s~~~~--~l~s~s~dg~i~---------iwd~~~-~~~~~~~~~~~~~~~v~~l~~s~d~----------~~l~s~ 522 (540)
.+.|-|+ ++.---.+..+- .|+..+ .+++.++. +|...|....|-..+ -.|+|-
T Consensus 252 --r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~--GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTW 327 (1081)
T KOG0309|consen 252 --RYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFV--GHDDVVLEFLWRKRKECDGDYDSRDFQLVTW 327 (1081)
T ss_pred --cccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeec--CcchHHHHHhhhhcccccCCCCccceeEEEe
Confidence 3444333 222111122333 344433 35688888 999999888775432 368899
Q ss_pred c-CCeeEEEEcccc
Q psy18231 523 C-GNNVKLWTAEED 535 (540)
Q Consensus 523 ~-d~~i~iw~~~~~ 535 (540)
+ |.++++|.+.+.
T Consensus 328 SkD~~lrlWpI~~~ 341 (1081)
T KOG0309|consen 328 SKDQTLRLWPIDSQ 341 (1081)
T ss_pred ecCCceEeeeccHH
Confidence 9 999999998764
|
|
| >KOG2041|consensus | Back alignment and domain information |
|---|
Probab=99.12 E-value=2.5e-09 Score=101.75 Aligned_cols=228 Identities=11% Similarity=0.108 Sum_probs=156.9
Q ss_pred CcceeEEEEeeCCCeEEEeeCCCeEEEEEcCCCc---------------eeEeccccCCceeEEEECCCCCEEEEecCCC
Q psy18231 206 AHEVNDATAACDSSQIASGASDKSVILWEVTTGQ---------------PVRRWREHASKVTCVKFNEDSSVVISGSQDN 270 (540)
Q Consensus 206 ~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~---------------~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg 270 (540)
.....|++|+.+..++|+|+.||.+++..+.+.. .-+++.+|...|.-+.|+.+.+.|-+...+|
T Consensus 14 nvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~G 93 (1189)
T KOG2041|consen 14 NVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSG 93 (1189)
T ss_pred CceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCCc
Confidence 4567899999999999999999999999886531 2356789999999999999989999999999
Q ss_pred cEEEEEecCCCCCCcchhhhhHhhhhcCCceeEEEEeecccccccccCceeeEEEeeeecccccceeeeeeccceeEEEe
Q psy18231 271 TVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLL 350 (540)
Q Consensus 271 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (540)
-|.+|-+-.+..-...
T Consensus 94 lIiVWmlykgsW~EEM---------------------------------------------------------------- 109 (1189)
T KOG2041|consen 94 LIIVWMLYKGSWCEEM---------------------------------------------------------------- 109 (1189)
T ss_pred eEEEEeeecccHHHHH----------------------------------------------------------------
Confidence 9999998776520000
Q ss_pred ecccceecccccccccccchhhhhhcccccEEEEEecC--CeeEeeeCCCeEEEEeCCCCceE-EeeeCCceEEEEEecC
Q psy18231 351 DFLGSTQIGDVTPISIHNSCFQALKEARDSITSVHVSD--HEILTASLDCRIRRYDIRTGNLV-TDYVGEPIVDACFTRD 427 (540)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~--~~l~~~~~dg~i~iwd~~~~~~~-~~~~~~~i~~~~~sp~ 427 (540)
.-....+-|.+++|+. ..+.....||.|.+=.++..+.- +.+.+.....+.|++|
T Consensus 110 ----------------------iNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLkg~~l~hv~ws~D 167 (1189)
T KOG2041|consen 110 ----------------------INNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELKGQLLAHVLWSED 167 (1189)
T ss_pred ----------------------hhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhcchheccceeeccc
Confidence 1112234556666654 55556666666655544433221 2344455668899999
Q ss_pred CcEEEeecCCCeEEEEeccccchhhhhc------------cCcCCcceEEE-----Ee-cCCCCeEEEeeCCCcEEEEEe
Q psy18231 428 CQCILTCSTDECLRLFDKATGELLEEYK------------GHKSGDFRIEC-----CL-DSKDSQIFCGSSDGKIYKWQL 489 (540)
Q Consensus 428 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~------------~~~~~v~~~~~-----~~-s~~~~~l~s~s~dg~i~iwd~ 489 (540)
.+.++.+-.+|.+++||.... ....++ .....+..+.+ .. -||...|+.+-..|.+.|..-
T Consensus 168 ~~~~Lf~~ange~hlydnqgn-F~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~ 246 (1189)
T KOG2041|consen 168 LEQALFKKANGETHLYDNQGN-FERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRS 246 (1189)
T ss_pred HHHHHhhhcCCcEEEeccccc-HHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhh
Confidence 999999999999999997532 111111 00111222211 11 257778999999999998876
Q ss_pred cCCcceeEEEecccceeeeEEEEcCCCcEEEeec
Q psy18231 490 VDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC 523 (540)
Q Consensus 490 ~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~ 523 (540)
.+......+. -.-.+....|+++|..|+.++
T Consensus 247 eND~~Pvv~d---tgm~~vgakWnh~G~vLAvcG 277 (1189)
T KOG2041|consen 247 ENDPEPVVVD---TGMKIVGAKWNHNGAVLAVCG 277 (1189)
T ss_pred cCCCCCeEEe---cccEeecceecCCCcEEEEcc
Confidence 5554444443 235688999999999999987
|
|
| >COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.12 E-value=6.4e-08 Score=88.94 Aligned_cols=294 Identities=13% Similarity=0.165 Sum_probs=174.9
Q ss_pred EEEcCCCCeeEEEeecCCcceeEEEEeeCCCeEEEeeCCCeEEEEEcCCCceeEeccccCCceeEEEECCCCCEEEEecC
Q psy18231 189 KLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQ 268 (540)
Q Consensus 189 ~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~ 268 (540)
.+|+..+...-..+....-++...+|||.|.+|++....| |.+|.-..+..+..+. ...|..+.|+|++++|.+=+.
T Consensus 15 ~f~~~~s~~~~~~~~~~~~p~~~~~~SP~G~~l~~~~~~~-V~~~~g~~~~~l~~~~--~~~V~~~~fSP~~kYL~tw~~ 91 (561)
T COG5354 15 VFWNSQSEVIHTRFESENWPVAYVSESPLGTYLFSEHAAG-VECWGGPSKAKLVRFR--HPDVKYLDFSPNEKYLVTWSR 91 (561)
T ss_pred EeecCccccccccccccCcchhheeecCcchheehhhccc-eEEccccchhheeeee--cCCceecccCcccceeeeecc
Confidence 3566655555555554667889999999999999887654 9999988877555553 456899999999999998654
Q ss_pred CC---------------cEEEEEecCCCCCCcchhhhhHhhhhcCCceeEEEEeecccccccccCceeeEEEeeeecccc
Q psy18231 269 DN---------------TVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLN 333 (540)
Q Consensus 269 dg---------------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (540)
.+ .+.+||+.++....... ..... ........|.+....
T Consensus 92 ~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~---------------------~~~q~-----~~~Wp~~k~s~~D~y 145 (561)
T COG5354 92 EPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFN---------------------GISQP-----YLGWPVLKFSIDDKY 145 (561)
T ss_pred CCccChhhccCCccccCceeEEeccCceeEeecc---------------------ccCCc-----ccccceeeeeecchh
Confidence 33 47888887765211000 00000 000001111111100
Q ss_pred cceeeeeeccceeEEEeecccceecccccccccccchhhhhhcccccEEEEEecCC----eeEe-----eeCCCeEEEEe
Q psy18231 334 GLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEARDSITSVHVSDH----EILT-----ASLDCRIRRYD 404 (540)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~----~l~~-----~~~dg~i~iwd 404 (540)
. ..-....+.+.+..+... ......+. ...|....++|. .|+. ...++.+++|.
T Consensus 146 --~---ARvv~~sl~i~e~t~n~~----------~~p~~~lr--~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~s 208 (561)
T COG5354 146 --V---ARVVGSSLYIHEITDNIE----------EHPFKNLR--PVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILS 208 (561)
T ss_pred --h---hhhccCeEEEEecCCccc----------cCchhhcc--ccceeeEEecCCCCCceEEEEccccCCCCcEEEEEE
Confidence 0 000122333333211111 11111111 356677777772 2332 35678899999
Q ss_pred CCCCceEEeee--CCceEEEEEecCCcEEEeec-----------CCCeEEEEeccccchhhhhccCcCCcceEEEEecCC
Q psy18231 405 IRTGNLVTDYV--GEPIVDACFTRDCQCILTCS-----------TDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSK 471 (540)
Q Consensus 405 ~~~~~~~~~~~--~~~i~~~~~sp~~~~l~~~~-----------~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~s~~ 471 (540)
+..+..+.+-. .-.-..+.|.+.|++|.+-- .+..++|+++.... +.......++|... +|.|.
T Consensus 209 Ip~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~-i~V~~~~~~pVhdf--~W~p~ 285 (561)
T COG5354 209 IPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERS-IPVEKDLKDPVHDF--TWEPL 285 (561)
T ss_pred ccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeecccc-cceeccccccceee--eeccc
Confidence 98766554332 23345677888888765421 13568888887433 33333556777666 89998
Q ss_pred CCeEEE--eeCCCcEEEEEecCCcceeEEEecccceeeeEEEEcCCCcEEEeec-C---CeeEEEEccccc
Q psy18231 472 DSQIFC--GSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC-G---NNVKLWTAEEDY 536 (540)
Q Consensus 472 ~~~l~s--~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~-d---~~i~iw~~~~~~ 536 (540)
++.+++ |-.+-.+.++|++.. ....+ ....=+.+.|||.+++++.++ | |.+.+|+..+.+
T Consensus 286 S~~F~vi~g~~pa~~s~~~lr~N-l~~~~----Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf 351 (561)
T COG5354 286 SSRFAVISGYMPASVSVFDLRGN-LRFYF----PEQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRF 351 (561)
T ss_pred CCceeEEecccccceeecccccc-eEEec----CCcccccccccCcccEEEEecCCccccceEEeccCCce
Confidence 887554 457888999997655 33333 344556778999999999877 5 578888876544
|
|
| >KOG1912|consensus | Back alignment and domain information |
|---|
Probab=99.10 E-value=5.4e-09 Score=100.51 Aligned_cols=235 Identities=14% Similarity=0.134 Sum_probs=161.1
Q ss_pred eEEEEeCCCCCEEEEeeCCCcEEEEcCCCCeeEEEeecCCcceeEEEEeeCC------------CeEEEeeCCCeEEEEE
Q psy18231 167 LMHTRFPVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDS------------SQIASGASDKSVILWE 234 (540)
Q Consensus 167 v~~v~~spdg~~lat~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~------------~~l~s~s~dg~i~iwd 234 (540)
-.++.|+|.| +||-|+ ...|.+-|..+.+.+..+..|...|+.+.|.|.. -+||++...|.|.+||
T Consensus 18 ~~A~Dw~~~G-LiAygs-hslV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d 95 (1062)
T KOG1912|consen 18 RNAADWSPSG-LIAYGS-HSLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVD 95 (1062)
T ss_pred ccccccCccc-eEEEec-CceEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEE
Confidence 5678899988 666666 5688899999999999999999999999998731 2467778889999999
Q ss_pred cCCCceeEeccccCCceeEEEECC---CC-CEEEEecCCCcEEEEEecCCCCCCcchhhhhHhhhhcCCceeEEEEeecc
Q psy18231 235 VTTGQPVRRWREHASKVTCVKFNE---DS-SVVISGSQDNTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKS 310 (540)
Q Consensus 235 ~~~~~~~~~~~~h~~~v~~~~~~~---~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (540)
...+..+..++.|.+++..++|-+ +. ..|+.-....++.+|+..+++..-.
T Consensus 96 ~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk------------------------- 150 (1062)
T KOG1912|consen 96 FVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWK------------------------- 150 (1062)
T ss_pred ehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeec-------------------------
Confidence 999998888999999999999977 33 4555555567999999998873110
Q ss_pred cccccccCceeeEEEeeeecccccceeeeeeccceeEEEeecccceecccccccccccchhhhhhcccccEEEEEecC--
Q psy18231 311 TKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEARDSITSVHVSD-- 388 (540)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~-- 388 (540)
.........|+.++|
T Consensus 151 ---------------------------------------------------------------~~ys~~iLs~f~~DPfd 167 (1062)
T KOG1912|consen 151 ---------------------------------------------------------------YDYSHEILSCFRVDPFD 167 (1062)
T ss_pred ---------------------------------------------------------------cccCCcceeeeeeCCCC
Confidence 001112233444444
Q ss_pred -CeeEeeeCCCeEEEEeCCC-------CceEEeee--------------CC-------------ceEEEEEecCCcEEEe
Q psy18231 389 -HEILTASLDCRIRRYDIRT-------GNLVTDYV--------------GE-------------PIVDACFTRDCQCILT 433 (540)
Q Consensus 389 -~~l~~~~~dg~i~iwd~~~-------~~~~~~~~--------------~~-------------~i~~~~~sp~~~~l~~ 433 (540)
..+..-+..|.+.+-+.-. ++..+.-. +. ....++|+|.-+-++.
T Consensus 168 ~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lf 247 (1062)
T KOG1912|consen 168 SRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILF 247 (1062)
T ss_pred cceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEE
Confidence 3333334444444433211 11100000 00 1224567887666666
Q ss_pred ecCCCeEEEEeccccchhhhhccCcCCcceEEEEecCCCCeEEEeeCCCcEEEEEecC
Q psy18231 434 CSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVD 491 (540)
Q Consensus 434 ~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~s~~~~~l~s~s~dg~i~iwd~~~ 491 (540)
......+.++|++-..++....-..+.+..+.+-..|....|++.-.||.+.+|-.+.
T Consensus 248 i~~prellv~dle~~~~l~vvpier~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~ 305 (1062)
T KOG1912|consen 248 ITFPRELLVFDLEYECCLAVVPIERGGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKE 305 (1062)
T ss_pred EEeccceEEEcchhhceeEEEEeccCCcceeEeccCCCcceEEEEecCCeEEEEEeec
Confidence 6677889999999888887777666666666444555556799999999999998654
|
|
| >PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.4e-07 Score=80.95 Aligned_cols=241 Identities=12% Similarity=0.106 Sum_probs=132.8
Q ss_pred EEeCCCCCEEEEeeCCCcEEEEcCCCC--eeEEEeec---CCcceeEEEEeeCCCeEEEeeCCCeEEEEEcCCCceeEec
Q psy18231 170 TRFPVDGSYCLTCGSDKKIKLWNPYRN--LLLKTYGG---HAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPVRRW 244 (540)
Q Consensus 170 v~~spdg~~lat~~~dg~i~iwd~~~~--~~~~~~~~---h~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~ 244 (540)
++.++||+.||+-- |..|.|-...+. ..+.+.+. ....=.-++||||+.+||.+...|+|+++|+.. ..+..+
T Consensus 3 ~~~~~~Gk~lAi~q-d~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g-~~lf~I 80 (282)
T PF15492_consen 3 LALSSDGKLLAILQ-DQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMG-SELFVI 80 (282)
T ss_pred eeecCCCcEEEEEe-ccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEeccc-ceeEEc
Confidence 56788999888764 778887765443 22222222 223446799999999999999999999999854 444444
Q ss_pred cc-------cCCceeEEEECCCC------CEEEEecCCCcEEEEEecCCCCCCcchhhhhHhhhhcCCceeEEEEeeccc
Q psy18231 245 RE-------HASKVTCVKFNEDS------SVVISGSQDNTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKST 311 (540)
Q Consensus 245 ~~-------h~~~v~~~~~~~~~------~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (540)
.. -...|..+.|.+.. ..|+.-..+|.++-|-+..+....
T Consensus 81 ~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~--------------------------- 133 (282)
T PF15492_consen 81 PPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQG--------------------------- 133 (282)
T ss_pred CcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCc---------------------------
Confidence 32 23467777775521 245555667777777664332100
Q ss_pred ccccccCceeeEEEeeeecccccceeeeeeccceeEEEeecccceecccccccccccchhhhhhcccccEEEEEe---cC
Q psy18231 312 KNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEARDSITSVHV---SD 388 (540)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~---~~ 388 (540)
......+.+.... ...+..+.+...+.+.+.......+... -......+++-.. .|
T Consensus 134 -------y~e~hsfsf~~~y-p~Gi~~~vy~p~h~LLlVgG~~~~~~~~-------------s~a~~~GLtaWRiL~~~P 192 (282)
T PF15492_consen 134 -------YQENHSFSFSSHY-PHGINSAVYHPKHRLLLVGGCEQNQDGM-------------SKASSCGLTAWRILSDSP 192 (282)
T ss_pred -------ceeeEEEEecccC-CCceeEEEEcCCCCEEEEeccCCCCCcc-------------ccccccCceEEEEcCCCC
Confidence 0111112221111 2233344444444444433222111000 0011122222222 23
Q ss_pred Ce-eEeeeCCCe------EEEEeCCCCceEEe--eeCCceEEEEEecCCcEEEeecCCCeEEEEeccccchhhhhccCcC
Q psy18231 389 HE-ILTASLDCR------IRRYDIRTGNLVTD--YVGEPIVDACFTRDCQCILTCSTDECLRLFDKATGELLEEYKGHKS 459 (540)
Q Consensus 389 ~~-l~~~~~dg~------i~iwd~~~~~~~~~--~~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~ 459 (540)
.+ .++...|+. ..+|.+-+.+.... -....|..|..||||+.||+...+|.|.+|++.+-+..+..+-++.
T Consensus 193 yyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~~~W~~~eq 272 (282)
T PF15492_consen 193 YYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQRSWKQDEQ 272 (282)
T ss_pred cEEEccccCccccccccccceeeccceeeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhhcccchhhC
Confidence 22 222222222 12333332222111 1236799999999999999999999999999999888877766554
Q ss_pred C
Q psy18231 460 G 460 (540)
Q Consensus 460 ~ 460 (540)
+
T Consensus 273 P 273 (282)
T PF15492_consen 273 P 273 (282)
T ss_pred C
Confidence 4
|
|
| >KOG4532|consensus | Back alignment and domain information |
|---|
Probab=99.06 E-value=2.2e-08 Score=84.32 Aligned_cols=146 Identities=10% Similarity=0.004 Sum_probs=102.8
Q ss_pred CeeEeeeCCCeEEEEeCCCCceEEeeeCC--ceEEEEEecCCcEEEeecCCCeEEEEecccc-chhhh-hccCcCCcceE
Q psy18231 389 HEILTASLDCRIRRYDIRTGNLVTDYVGE--PIVDACFTRDCQCILTCSTDECLRLFDKATG-ELLEE-YKGHKSGDFRI 464 (540)
Q Consensus 389 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~--~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~-~~~~~-~~~~~~~v~~~ 464 (540)
..+..++.|.++++.+++-+......+.. .+.++++++|++++++.+....|-.|.+... +.+.. ....+. -...
T Consensus 129 ~~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~-D~gF 207 (344)
T KOG4532|consen 129 FPLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTS-DHGF 207 (344)
T ss_pred cceeeccCCcceeEEEEecCcccceeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccC-CCce
Confidence 45777888888998888766554444433 3889999999999999999999999988653 22222 222111 1122
Q ss_pred EEEecCCCCeEEEeeCCCcEEEEEecCCcceeE---EEecccceeeeEEEEcCCC--cEEEeec-CCeeEEEEcccc
Q psy18231 465 ECCLDSKDSQIFCGSSDGKIYKWQLVDSSQIST---LIHSVGKAVVNSLCSHPTR--KHIMSAC-GNNVKLWTAEED 535 (540)
Q Consensus 465 ~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~---~~~~~~~~~v~~l~~s~d~--~~l~s~~-d~~i~iw~~~~~ 535 (540)
...|+.....+|++..||++.|||++....... -..+.|++.+..+.|++-| .+|..+- =+.+.+-|+.+.
T Consensus 208 ~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~ 284 (344)
T KOG4532|consen 208 YNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNY 284 (344)
T ss_pred eeeeccCcceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccC
Confidence 337899999999999999999999986543221 1234799999999999866 3444444 667777777654
|
|
| >KOG3914|consensus | Back alignment and domain information |
|---|
Probab=99.06 E-value=3.7e-09 Score=94.08 Aligned_cols=160 Identities=15% Similarity=0.147 Sum_probs=112.7
Q ss_pred eEEEEeCCCCCEEEEeeCCCcEEEEcCCCCe----eEEEeecCCcceeEEEEeeCCCeEEE---eeCCCeEEEEEcCCCc
Q psy18231 167 LMHTRFPVDGSYCLTCGSDKKIKLWNPYRNL----LLKTYGGHAHEVNDATAACDSSQIAS---GASDKSVILWEVTTGQ 239 (540)
Q Consensus 167 v~~v~~spdg~~lat~~~dg~i~iwd~~~~~----~~~~~~~h~~~v~~l~~sp~~~~l~s---~s~dg~i~iwd~~~~~ 239 (540)
...+..+|++++||++..+....+++..... ++..+.. ...-+++.|..+...... ++....+.+|+...+.
T Consensus 65 ~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v-~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~ 143 (390)
T KOG3914|consen 65 PALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCV-PKRPTAISFIREDTSVLVADKAGDVYSFDILSADSGR 143 (390)
T ss_pred ccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeec-ccCcceeeeeeccceEEEEeecCCceeeeeecccccC
Confidence 3445568889999988777776666654332 2333322 233345555555544443 3445567777766655
Q ss_pred eeEeccccCCceeEEEECCCCCEEEEecCCCcEEEEEecCCCCCCcchhhhhHhhhhcCCceeEEEEeecccccccccCc
Q psy18231 240 PVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHLSNGL 319 (540)
Q Consensus 240 ~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (540)
+.- +-+|-+-++.++|+||+++++++..|..|++-....-.. +
T Consensus 144 ~~~-~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~--I---------------------------------- 186 (390)
T KOG3914|consen 144 CEP-ILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFV--I---------------------------------- 186 (390)
T ss_pred cch-hhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccc--h----------------------------------
Confidence 443 448999999999999999999999999999876543220 0
Q ss_pred eeeEEEeeeecccccceeeeeeccceeEEEeecccceecccccccccccchhhhhhcccccEEEEEecC-CeeEeeeCCC
Q psy18231 320 LTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEARDSITSVHVSD-HEILTASLDC 398 (540)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~-~~l~~~~~dg 398 (540)
-.-.-+|..-|..++.-+ ..|++++.|+
T Consensus 187 ---------------------------------------------------esfclGH~eFVS~isl~~~~~LlS~sGD~ 215 (390)
T KOG3914|consen 187 ---------------------------------------------------ESFCLGHKEFVSTISLTDNYLLLSGSGDK 215 (390)
T ss_pred ---------------------------------------------------hhhccccHhheeeeeeccCceeeecCCCC
Confidence 002347999999999998 6679999999
Q ss_pred eEEEEeCCCCceEEeee
Q psy18231 399 RIRRYDIRTGNLVTDYV 415 (540)
Q Consensus 399 ~i~iwd~~~~~~~~~~~ 415 (540)
++++||+.+++.+..++
T Consensus 216 tlr~Wd~~sgk~L~t~d 232 (390)
T KOG3914|consen 216 TLRLWDITSGKLLDTCD 232 (390)
T ss_pred cEEEEecccCCcccccc
Confidence 99999999999887665
|
|
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=99.04 E-value=1e-07 Score=85.55 Aligned_cols=219 Identities=20% Similarity=0.245 Sum_probs=139.9
Q ss_pred CCcEEEEcCCCCeeEEEeecCCcceeEEE--EeeCCCeEEEeeCCCeEEEEEcCCCceeEeccccCCceeEEEECCCCCE
Q psy18231 185 DKKIKLWNPYRNLLLKTYGGHAHEVNDAT--AACDSSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSV 262 (540)
Q Consensus 185 dg~i~iwd~~~~~~~~~~~~h~~~v~~l~--~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 262 (540)
+|+|..||..+|+.+.+..- ...+.... ..+++..+++++.++.+..||..+|+.+..... .+.+..... .++..
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~-~~~~~~~~~-~~~~~ 78 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDL-GPGIGGPVATAVPDGGRVYVASGDGNLYALDAKTGKVLWRFDL-PGPISGAPV-VDGGR 78 (238)
T ss_dssp TSEEEEEETTTTEEEEEEEC-SSSCSSEEETEEEETTEEEEEETTSEEEEEETTTSEEEEEEEC-SSCGGSGEE-EETTE
T ss_pred CCEEEEEECCCCCEEEEEEC-CCCCCCccceEEEeCCEEEEEcCCCEEEEEECCCCCEEEEeec-cccccceee-ecccc
Confidence 68999999999999988863 21122222 344677788889999999999999998877654 222221111 23456
Q ss_pred EEEecCCCcEEEEEecCCCCCCcchhhhhHhhhhcCCceeEEEEeecccccccccCceeeEEEeeeecccccceeeeeec
Q psy18231 263 VISGSQDNTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMS 342 (540)
Q Consensus 263 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (540)
++.++.++.|..+|..+++..-..
T Consensus 79 v~v~~~~~~l~~~d~~tG~~~W~~-------------------------------------------------------- 102 (238)
T PF13360_consen 79 VYVGTSDGSLYALDAKTGKVLWSI-------------------------------------------------------- 102 (238)
T ss_dssp EEEEETTSEEEEEETTTSCEEEEE--------------------------------------------------------
T ss_pred cccccceeeeEecccCCcceeeee--------------------------------------------------------
Confidence 666777889999998888721000
Q ss_pred cceeEEEeecccceecccccccccccchhhhhhcc-cccEEEEEecCCeeEeeeCCCeEEEEeCCCCceEEeeeCCc---
Q psy18231 343 TQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEA-RDSITSVHVSDHEILTASLDCRIRRYDIRTGNLVTDYVGEP--- 418 (540)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~l~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~--- 418 (540)
... ..... ........+..+.++++..++.|..+|+++|+.+.......
T Consensus 103 ---------~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~ 155 (238)
T PF13360_consen 103 ---------YLT------------------SSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRG 155 (238)
T ss_dssp ---------EE-------------------SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-S
T ss_pred ---------ccc------------------cccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCC
Confidence 000 00000 01112233346778888889999999999999987775421
Q ss_pred ---------eEEEEEecCCcEEEeecCCCe-EEEEeccccchhhhhccCcCCcceEEEEecCCCCeEEEeeCCCcEEEEE
Q psy18231 419 ---------IVDACFTRDCQCILTCSTDEC-LRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQ 488 (540)
Q Consensus 419 ---------i~~~~~sp~~~~l~~~~~dg~-i~i~d~~~~~~~~~~~~~~~~v~~~~~~~s~~~~~l~s~s~dg~i~iwd 488 (540)
+..-....++ .+..++.++. +.+ |+.+++.+.... ...... ....++..|+.++.++.|..||
T Consensus 156 ~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~-d~~tg~~~w~~~--~~~~~~---~~~~~~~~l~~~~~~~~l~~~d 228 (238)
T PF13360_consen 156 SSPISSFSDINGSPVISDG-RVYVSSGDGRVVAV-DLATGEKLWSKP--ISGIYS---LPSVDGGTLYVTSSDGRLYALD 228 (238)
T ss_dssp S--EEEETTEEEEEECCTT-EEEEECCTSSEEEE-ETTTTEEEEEEC--SS-ECE---CEECCCTEEEEEETTTEEEEEE
T ss_pred CcceeeecccccceEEECC-EEEEEcCCCeEEEE-ECCCCCEEEEec--CCCccC---CceeeCCEEEEEeCCCEEEEEE
Confidence 1122222345 6666666775 555 999998553222 222221 2457788888888999999999
Q ss_pred ecCCccee
Q psy18231 489 LVDSSQIS 496 (540)
Q Consensus 489 ~~~~~~~~ 496 (540)
+.+++.+-
T Consensus 229 ~~tG~~~W 236 (238)
T PF13360_consen 229 LKTGKVVW 236 (238)
T ss_dssp TTTTEEEE
T ss_pred CCCCCEEe
Confidence 99998764
|
... |
| >PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal | Back alignment and domain information |
|---|
Probab=99.01 E-value=2.8e-07 Score=79.14 Aligned_cols=69 Identities=9% Similarity=0.157 Sum_probs=47.6
Q ss_pred EEEeeCCCeEEEeeCCCeEEEEEcCCC--ceeE---eccccCCceeEEEECCCCCEEEEecCCCcEEEEEecCCC
Q psy18231 212 ATAACDSSQIASGASDKSVILWEVTTG--QPVR---RWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRS 281 (540)
Q Consensus 212 l~~sp~~~~l~s~s~dg~i~iwd~~~~--~~~~---~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~ 281 (540)
++.+++|+.||.. .|..|.|=..++. ..+. .-+.....=..++|+||+..||.+...|+|+++|+....
T Consensus 3 ~~~~~~Gk~lAi~-qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~ 76 (282)
T PF15492_consen 3 LALSSDGKLLAIL-QDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGSE 76 (282)
T ss_pred eeecCCCcEEEEE-eccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEecccce
Confidence 5667788866655 4566666655442 1111 222333445789999999999999999999999997654
|
|
| >KOG2314|consensus | Back alignment and domain information |
|---|
Probab=98.99 E-value=2.2e-07 Score=86.34 Aligned_cols=253 Identities=13% Similarity=0.154 Sum_probs=161.5
Q ss_pred ccceeeeecccccceeee-ee--c--C-eEEEEeCCCCCEEEEeeCCCcEEEEcCCCCeeEEEeecCCcceeEEEEeeCC
Q psy18231 145 KEWSIRVYRPLTVNRELF-VL--S--G-LMHTRFPVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDS 218 (540)
Q Consensus 145 ~~~~i~~~~~~~~~~~~~-h~--~--~-v~~v~~spdg~~lat~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~ 218 (540)
....+++|+..++..... +. + . -.-..||.|++|+|--.. .+|.||+..+..++..-.-.-..|....|+|.+
T Consensus 280 e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~-~sisIyEtpsf~lld~Kslki~gIr~FswsP~~ 358 (698)
T KOG2314|consen 280 EGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTG-NSISIYETPSFMLLDKKSLKISGIRDFSWSPTS 358 (698)
T ss_pred CCceEEEEEccccchhcceeccCCCccccceEEeccCCceeEEecc-ceEEEEecCceeeecccccCCccccCcccCCCc
Confidence 346799999998764322 22 1 1 234589999999996554 688899987755544333345678899999999
Q ss_pred CeEEEeeCC-----CeEEEEEcCCCceeEeccccCCceeEEEECCCCCEEEEecC----------CCcEEEEEecCCCCC
Q psy18231 219 SQIASGASD-----KSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQ----------DNTVMMWDVKSRSHH 283 (540)
Q Consensus 219 ~~l~s~s~d-----g~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~----------dg~i~iwd~~~~~~~ 283 (540)
+.||--... ..+.+-.+.+++.+++-.-|.-.=..+.|-.+|.+|+.--. =..+-|+.++....
T Consensus 359 ~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdI- 437 (698)
T KOG2314|consen 359 NLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDI- 437 (698)
T ss_pred ceEEEEcccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCC-
Confidence 888854432 46778888888888776655555556778888888764211 01122333322210
Q ss_pred CcchhhhhHhhhhcCCceeEEEEeecccccccccCceeeEEEeeeecccccceeeeeeccceeEEEeecccceecccccc
Q psy18231 284 PIQVRCLNEALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTP 363 (540)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (540)
++
T Consensus 438 pv------------------------------------------------------------------------------ 439 (698)
T KOG2314|consen 438 PV------------------------------------------------------------------------------ 439 (698)
T ss_pred Cc------------------------------------------------------------------------------
Confidence 00
Q ss_pred cccccchhhhhhcccccEEEEEecC--CeeEeee---CCCeEEEEeCCC----CceEEeeeCCceEEEEEecCCcEEEee
Q psy18231 364 ISIHNSCFQALKEARDSITSVHVSD--HEILTAS---LDCRIRRYDIRT----GNLVTDYVGEPIVDACFTRDCQCILTC 434 (540)
Q Consensus 364 ~~~~~~~~~~~~~~~~~v~~l~~~~--~~l~~~~---~dg~i~iwd~~~----~~~~~~~~~~~i~~~~~sp~~~~l~~~ 434 (540)
....-...|...+|.| +.+++-+ ...++.+|.+++ .+++..+.....+.+.|+|.|++++.+
T Consensus 440 ---------e~velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk~~~N~vfwsPkG~fvvva 510 (698)
T KOG2314|consen 440 ---------EVVELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELDKKFANTVFWSPKGRFVVVA 510 (698)
T ss_pred ---------eeeecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhcccccceEEEcCCCcEEEEE
Confidence 1112346777888888 5544433 246788898873 234555656678899999999998876
Q ss_pred c---CCCeEEEEeccccchhhhh-ccCcCCcceEEEEecCCCCeEEEeeC------CCcEEEEEe
Q psy18231 435 S---TDECLRLFDKATGELLEEY-KGHKSGDFRIECCLDSKDSQIFCGSS------DGKIYKWQL 489 (540)
Q Consensus 435 ~---~dg~i~i~d~~~~~~~~~~-~~~~~~v~~~~~~~s~~~~~l~s~s~------dg~i~iwd~ 489 (540)
. ..|.+..+|+.......+- ..|.. .+.+ .|.|.|+|+++++. |.--++|+.
T Consensus 511 ~l~s~~g~l~F~D~~~a~~k~~~~~eh~~-at~v--eWDPtGRYvvT~ss~wrhk~d~GYri~tf 572 (698)
T KOG2314|consen 511 ALVSRRGDLEFYDTDYADLKDTASPEHFA-ATEV--EWDPTGRYVVTSSSSWRHKVDNGYRIFTF 572 (698)
T ss_pred EecccccceEEEecchhhhhhccCccccc-cccc--eECCCCCEEEEeeehhhhccccceEEEEe
Confidence 4 4788999998743322221 22322 2334 79999999999875 334556664
|
|
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.97 E-value=5.5e-07 Score=86.76 Aligned_cols=216 Identities=10% Similarity=0.005 Sum_probs=124.4
Q ss_pred CcEEEEcCCCCeeEEEeecCCcceeEEEEeeCCCe-EEEeeC---CCeEEEEEcCCCceeEeccccCCceeEEEECCCCC
Q psy18231 186 KKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQ-IASGAS---DKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSS 261 (540)
Q Consensus 186 g~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~-l~s~s~---dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~ 261 (540)
..|.+-|..... .+.+... +.+....|+|||+. ++..+. +..|.++|+.+++..... ...+......|+|||+
T Consensus 169 ~~l~~~d~dg~~-~~~~~~~-~~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt-~~~g~~~~~~~SPDG~ 245 (419)
T PRK04043 169 SNIVLADYTLTY-QKVIVKG-GLNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIA-SSQGMLVVSDVSKDGS 245 (419)
T ss_pred ceEEEECCCCCc-eeEEccC-CCeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEe-cCCCcEEeeEECCCCC
Confidence 355555653333 3333323 37788999999985 554433 357899999888765443 3455566788999998
Q ss_pred EEEE-ecCC--CcEEEEEecCCCCCCcchhhhhHhhhhcCCceeEEEEeecccccccccCceeeEEEeeeecccccceee
Q psy18231 262 VVIS-GSQD--NTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSG 338 (540)
Q Consensus 262 ~l~s-~~~d--g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (540)
.++. .+.+ ..|.++|+.+++..++
T Consensus 246 ~la~~~~~~g~~~Iy~~dl~~g~~~~L----------------------------------------------------- 272 (419)
T PRK04043 246 KLLLTMAPKGQPDIYLYDTNTKTLTQI----------------------------------------------------- 272 (419)
T ss_pred EEEEEEccCCCcEEEEEECCCCcEEEc-----------------------------------------------------
Confidence 6654 3334 4566667665542111
Q ss_pred eeeccceeEEEeecccceecccccccccccchhhhhhcccccEEEEEecC--CeeEeee-CCC--eEEEEeCCCCceEEe
Q psy18231 339 VLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEARDSITSVHVSD--HEILTAS-LDC--RIRRYDIRTGNLVTD 413 (540)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~--~~l~~~~-~dg--~i~iwd~~~~~~~~~ 413 (540)
..+........|+| +.++..+ ..+ .|.+.|+.+++..+.
T Consensus 273 ------------------------------------T~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rl 316 (419)
T PRK04043 273 ------------------------------------TNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQV 316 (419)
T ss_pred ------------------------------------ccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeC
Confidence 01111112235666 3444333 233 578888887776443
Q ss_pred eeCCceEEEEEecCCcEEEeecCC---------CeEEEEeccccchhhhhccCcCCcceEEEEecCCCCeEEEeeCC-C-
Q psy18231 414 YVGEPIVDACFTRDCQCILTCSTD---------ECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSD-G- 482 (540)
Q Consensus 414 ~~~~~i~~~~~sp~~~~l~~~~~d---------g~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~s~~~~~l~s~s~d-g- 482 (540)
..... ....|||||+.++..... ..|.+.|+.+++.. .+.... .... ..|+|||+.|+..+.+ +
T Consensus 317 t~~g~-~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~-~LT~~~-~~~~--p~~SPDG~~I~f~~~~~~~ 391 (419)
T PRK04043 317 VFHGK-NNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIR-RLTANG-VNQF--PRFSSDGGSIMFIKYLGNQ 391 (419)
T ss_pred ccCCC-cCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeE-ECCCCC-CcCC--eEECCCCCEEEEEEccCCc
Confidence 33221 235899999988876643 36888898877542 333221 1122 3799999987765543 2
Q ss_pred -cEEEEEecCCcceeEEE
Q psy18231 483 -KIYKWQLVDSSQISTLI 499 (540)
Q Consensus 483 -~i~iwd~~~~~~~~~~~ 499 (540)
.+.+.++ ++.....+.
T Consensus 392 ~~L~~~~l-~g~~~~~l~ 408 (419)
T PRK04043 392 SALGIIRL-NYNKSFLFP 408 (419)
T ss_pred EEEEEEec-CCCeeEEee
Confidence 3556665 344444444
|
|
| >PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [] | Back alignment and domain information |
|---|
Probab=98.97 E-value=5.1e-07 Score=94.88 Aligned_cols=282 Identities=11% Similarity=0.120 Sum_probs=159.9
Q ss_pred CeEEEEeCCCCCEE--EEeeCCC--cEEEEcCCCC---eeEEEee-----cCCcceeEEEEeeCCCeEEEeeCCCeEEEE
Q psy18231 166 GLMHTRFPVDGSYC--LTCGSDK--KIKLWNPYRN---LLLKTYG-----GHAHEVNDATAACDSSQIASGASDKSVILW 233 (540)
Q Consensus 166 ~v~~v~~spdg~~l--at~~~dg--~i~iwd~~~~---~~~~~~~-----~h~~~v~~l~~sp~~~~l~s~s~dg~i~iw 233 (540)
.+...+|.+....+ +++.... .|.+...... +.+..+. ...+.|.++.+.++...++.+..+|.|.+.
T Consensus 23 ~~~~~~~d~~sd~i~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~~~~~~~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~ 102 (928)
T PF04762_consen 23 PITATAFDSDSDSIYFVLGPNEIDYVIELDRFSQDGSVEVLASWDAPLPDDPNDKIVSFQYLADSESLCIALASGDIILV 102 (928)
T ss_pred ccceEEEecCCCeEEEEECCCCcceEEEEEeeccCCceeEEEeccccCCcCCCCcEEEEEeccCCCcEEEEECCceEEEE
Confidence 45666666654433 3333222 3344333222 2333332 235789999999999999999999999999
Q ss_pred ----EcCCCceeEeccccCCceeEEEECCCCCEEEEecCCCcEEEEEecCCCCCCcchhhhhHhhhhcCCceeEEEEeec
Q psy18231 234 ----EVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVK 309 (540)
Q Consensus 234 ----d~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (540)
+..+.. +.....-...|.+++||||+..|+..+.++++.+..- +.. ++....+.....+.
T Consensus 103 ~~~~~~~~~~-~E~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~-~fd--~i~E~~l~~~~~~~------------ 166 (928)
T PF04762_consen 103 REDPDPDEDE-IEIVGSVDSGILAASWSPDEELLALVTGEGNLLLMTR-DFD--PISEVPLDSDDFGE------------ 166 (928)
T ss_pred EccCCCCCce-eEEEEEEcCcEEEEEECCCcCEEEEEeCCCEEEEEec-cce--EEEEeecCccccCC------------
Confidence 544332 2233345778999999999999999999999887642 221 11100000000000
Q ss_pred ccccccccCceeeEEEeeeecccccceeeeeeccceeEEEeecccceecccccccccccchhhhhhcccccEEEEE---e
Q psy18231 310 STKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEARDSITSVH---V 386 (540)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~---~ 386 (540)
... +... |-.+.- .+.+..+. ..+ -
T Consensus 167 ----------------------------------~~~-VsVG-------WGkKeT--------QF~Gs~gK--~aa~~~~ 194 (928)
T PF04762_consen 167 ----------------------------------SKH-VSVG-------WGKKET--------QFHGSAGK--AAARQLR 194 (928)
T ss_pred ----------------------------------Cce-eeec-------cCcccC--------ccCcchhh--hhhhhcc
Confidence 000 0000 000000 00000000 000 0
Q ss_pred cCCeeEeeeCCCeEEEEeCCCCceEEeeeCCceEEEEEecCCcEEEeecC---C---CeEEEEeccccchhhhhccCcCC
Q psy18231 387 SDHEILTASLDCRIRRYDIRTGNLVTDYVGEPIVDACFTRDCQCILTCST---D---ECLRLFDKATGELLEEYKGHKSG 460 (540)
Q Consensus 387 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~---d---g~i~i~d~~~~~~~~~~~~~~~~ 460 (540)
.|. +- --..+.+. ....-..++|-.||+++|+.+- . ..++||+-+ |+...+-..-.+-
T Consensus 195 ~p~-~~-~~d~~~~s-------------~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~gL 258 (928)
T PF04762_consen 195 DPT-VP-KVDEGKLS-------------WDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVDGL 258 (928)
T ss_pred CCC-CC-ccccCccc-------------cCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccCCCc
Confidence 000 00 00011111 1234567899999999998774 2 479999954 6544333322222
Q ss_pred cceEEEEecCCCCeEEEeeC---CCcEEEEEecCCcceeEEEec--ccceeeeEEEEcCCCcEEEeecCCeeEEEEccc
Q psy18231 461 DFRIECCLDSKDSQIFCGSS---DGKIYKWQLVDSSQISTLIHS--VGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEE 534 (540)
Q Consensus 461 v~~~~~~~s~~~~~l~s~s~---dg~i~iwd~~~~~~~~~~~~~--~~~~~v~~l~~s~d~~~l~s~~d~~i~iw~~~~ 534 (540)
-..+ +|.|.|++||+.-. ...|.+|. ++|-....+... .....|..+.|++|+..||..-...|.+|-..+
T Consensus 259 e~~l--~WrPsG~lIA~~q~~~~~~~VvFfE-rNGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~vqLWt~~N 334 (928)
T PF04762_consen 259 EGAL--SWRPSGNLIASSQRLPDRHDVVFFE-RNGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDRVQLWTRSN 334 (928)
T ss_pred cCCc--cCCCCCCEEEEEEEcCCCcEEEEEe-cCCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCCceEEEeeC
Confidence 2234 89999999998864 45677887 677666666532 356789999999999999997744599998754
|
|
| >TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein | Back alignment and domain information |
|---|
Probab=98.96 E-value=1.1e-09 Score=100.92 Aligned_cols=109 Identities=19% Similarity=0.241 Sum_probs=84.4
Q ss_pred cceecCCceEEec-cCCCCCHHHHHHHHHcCCCEEEe---------------------eeeecccccccchhh-cccccc
Q psy18231 10 RSTLLKNLKHCDS-TLWTSKLNFRQLVRSHNVDLCFT---------------------PMIIADSFIKSSKAR-NNEFST 66 (540)
Q Consensus 10 ~~~~~~~~~~~ap-~~~~~~~~~r~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~-~~~~~~ 66 (540)
.++.+++++++|| |.+.++.++|.+++. |++.+++ +|+++..+....... ...+..
T Consensus 6 ~g~~l~npi~~aag~~~~~~~~~~~~~~~-G~g~iv~kt~~~~~~~gn~~pr~~~~~~~~~n~~gl~~~g~~~~~~~~~~ 84 (300)
T TIGR01037 6 FGIRFKNPLILASGIMGSGVESLRRIDRS-GAGAVVTKSIGLEPRPGYRNPTIVETPCGMLNAIGLQNPGVEAFLEELKP 84 (300)
T ss_pred CCEECCCCCEeCCcCCCCCHHHHHHHHHc-CCcEEEeCccccccccCCCCCeEEecccHHhhhccCCCcCHHHHHHHHHH
Confidence 3678899999999 589999999998877 9999999 677766665533222 223222
Q ss_pred --CCCCCCEEEEEecCChhHHHHHHHHhcC---CCCeEeeccCCCceEEEeccccceecccc
Q psy18231 67 --SPEDTPLVVQFASNNHDDFVRATQYVAP---HCNGVDLNCGCPQRWAIKEGYGCALLSKQ 123 (540)
Q Consensus 67 --~~~~~~~~~q~~~~~~~~~~~~~~~~~~---~~~~id~~~gc~~~~~~~~g~g~~l~~~~ 123 (540)
++.+.|+++|++|.++++++++++.+++ +++.|++|+|||.. .+.|..++.++
T Consensus 85 ~~~~~~~pl~~qi~g~~~~~~~~~a~~~~~~~~~~d~ielN~~cP~~----~~~g~~l~~~~ 142 (300)
T TIGR01037 85 VREEFPTPLIASVYGSSVEEFAEVAEKLEKAPPYVDAYELNLSCPHV----KGGGIAIGQDP 142 (300)
T ss_pred HhccCCCcEEEEeecCCHHHHHHHHHHHHhccCccCEEEEECCCCCC----CCCccccccCH
Confidence 2334699999999999999999998874 48999999999985 35677777764
|
This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase. |
| >KOG1832|consensus | Back alignment and domain information |
|---|
Probab=98.95 E-value=1e-09 Score=106.88 Aligned_cols=257 Identities=16% Similarity=0.211 Sum_probs=179.0
Q ss_pred eeecCeEEEEeCCCCCEEEEeeCCCcEEEEcCCCCeeEEEeecCCcceeEEEEeeCCCeEEEeeCCC--eEEEEEcCC-C
Q psy18231 162 FVLSGLMHTRFPVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDK--SVILWEVTT-G 238 (540)
Q Consensus 162 ~h~~~v~~v~~spdg~~lat~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~dg--~i~iwd~~~-~ 238 (540)
.|...-+|++|+-+.+.|+.|+..|.|+++++.+|.......+|...|+-+.=+.||..+++.+.-. ...+|++.+ +
T Consensus 1099 d~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~~~s~~ 1178 (1516)
T KOG1832|consen 1099 DETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWDASSTG 1178 (1516)
T ss_pred ccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHHHhcccccc
Confidence 4678899999999999999999999999999999999999999999999999999999877765533 478999864 3
Q ss_pred ceeEeccccCCceeEEEECCCCCEEEEecCCCcEEEEEecCCCCCCcchhhhhHhhhhcCCceeEEEEeecccccccccC
Q psy18231 239 QPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHLSNG 318 (540)
Q Consensus 239 ~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (540)
...+++. .-.++.|+.....-+.|.......+||+.+........
T Consensus 1179 ~~~Hsf~----ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tyl------------------------------- 1223 (1516)
T KOG1832|consen 1179 GPRHSFD----EDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYL------------------------------- 1223 (1516)
T ss_pred Ccccccc----ccceeehhhhHHHHHhcccccceEEEecccCcHHHHhc-------------------------------
Confidence 4444443 34678888754444555555678999999886311100
Q ss_pred ceeeEEEeeeecccccceeeeeeccceeEEEeecccceecccccccccccchhhhhhcccccEEEEEecC-CeeEeeeCC
Q psy18231 319 LLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEARDSITSVHVSD-HEILTASLD 397 (540)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~-~~l~~~~~d 397 (540)
....+.+..-.+..|+| +.|+. .|
T Consensus 1224 -----------------------------------------------------t~~~~~~y~~n~a~FsP~D~LIl--nd 1248 (1516)
T KOG1832|consen 1224 -----------------------------------------------------TDTVTSSYSNNLAHFSPCDTLIL--ND 1248 (1516)
T ss_pred -----------------------------------------------------CcchhhhhhccccccCCCcceEe--eC
Confidence 00001111225667888 44443 34
Q ss_pred CeEEEEeCCCCceEEeeeCCceE-EEEEecCCcEEEeecCCCeEEEEeccccchhhhhccCcCCcceEEEEecCCCCeEE
Q psy18231 398 CRIRRYDIRTGNLVTDYVGEPIV-DACFTRDCQCILTCSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIF 476 (540)
Q Consensus 398 g~i~iwd~~~~~~~~~~~~~~i~-~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~s~~~~~l~ 476 (540)
| .+||++..+.++.+..-.++ .-.|+|.|..++.-++ |||+++.+.++....-.. ..+.|+..|..++
T Consensus 1249 G--vLWDvR~~~aIh~FD~ft~~~~G~FHP~g~eVIINSE-----IwD~RTF~lLh~VP~Ldq----c~VtFNstG~VmY 1317 (1516)
T KOG1832|consen 1249 G--VLWDVRIPEAIHRFDQFTDYGGGGFHPSGNEVIINSE-----IWDMRTFKLLHSVPSLDQ----CAVTFNSTGDVMY 1317 (1516)
T ss_pred c--eeeeeccHHHHhhhhhheecccccccCCCceEEeech-----hhhhHHHHHHhcCccccc----eEEEeccCccchh
Confidence 4 47999988887777653332 3479999999988765 999999988877654432 2336777777655
Q ss_pred Eee-----C--------C----CcEEEEEecCCcceeEEEecccceeeeEEEEcCCCcEEEee
Q psy18231 477 CGS-----S--------D----GKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSA 522 (540)
Q Consensus 477 s~s-----~--------d----g~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~ 522 (540)
..- . + ...+-+|..+.+.+.++. -...+..++-+|...+|..-
T Consensus 1318 a~~~~~d~~sdvh~~r~k~p~fSSFRTf~a~dYs~iaTi~---v~R~~~Dlct~~~D~~l~vI 1377 (1516)
T KOG1832|consen 1318 AMLNIEDVMSDVHTRRVKHPLFSSFRTFDAIDYSDIATIP---VDRCLLDLCTEPTDSFLGVI 1377 (1516)
T ss_pred hhhhhhhhhhhhcccccccchhhhhccccccccccceeee---cccchhhhhcCCccceEEEE
Confidence 432 0 0 134556666677777775 45567788888888777754
|
|
| >PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [] | Back alignment and domain information |
|---|
Probab=98.91 E-value=2.8e-06 Score=89.48 Aligned_cols=116 Identities=18% Similarity=0.224 Sum_probs=83.6
Q ss_pred eecCeEEEEeCCCCCEEEEeeC------CCcEEEEcCCCCeeEEEeecCCcceeEEEEeeCCCeEEEeeC---CCeEEEE
Q psy18231 163 VLSGLMHTRFPVDGSYCLTCGS------DKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGAS---DKSVILW 233 (540)
Q Consensus 163 h~~~v~~v~~spdg~~lat~~~------dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~---dg~i~iw 233 (540)
+.+.-..++|-.||+|+|+.+. -..++||+-+ |.+..+-..-.+--.+++|-|.|+++|+... ...|.+|
T Consensus 208 ~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFf 286 (928)
T PF04762_consen 208 WDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFF 286 (928)
T ss_pred cCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEE
Confidence 4456678999999999998764 2589999954 6654444333333457899999999998865 3567777
Q ss_pred EcCCCceeEec----cccCCceeEEEECCCCCEEEEecCCCcEEEEEecCCC
Q psy18231 234 EVTTGQPVRRW----REHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRS 281 (540)
Q Consensus 234 d~~~~~~~~~~----~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~ 281 (540)
.- +|-.-..| ......|..+.|++|+..|+..-.|. |.+|-..+..
T Consensus 287 Er-NGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYH 336 (928)
T PF04762_consen 287 ER-NGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYH 336 (928)
T ss_pred ec-CCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCE
Confidence 74 44322222 23467899999999999999977665 9999887765
|
|
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.91 E-value=5.1e-07 Score=86.99 Aligned_cols=115 Identities=13% Similarity=0.084 Sum_probs=77.0
Q ss_pred cCeEEEEeCCCCCE-EEEeeC---CCcEEEEcCCCCeeEEEeecCCcceeEEEEeeCCCeEEEe-eCC--CeEEEEEcCC
Q psy18231 165 SGLMHTRFPVDGSY-CLTCGS---DKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASG-ASD--KSVILWEVTT 237 (540)
Q Consensus 165 ~~v~~v~~spdg~~-lat~~~---dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~-s~d--g~i~iwd~~~ 237 (540)
+......|||||+. ++..+. +..|.++|+.+++...... ..+......|+|||+.|+.. +.+ ..|.++|+.+
T Consensus 188 ~~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~ 266 (419)
T PRK04043 188 GLNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-SQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNT 266 (419)
T ss_pred CCeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec-CCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCC
Confidence 46778999999985 554333 3578899998886554433 45666678899999877643 333 5688888877
Q ss_pred CceeEeccccCCceeEEEECCCCCEEEEecC-CC--cEEEEEecCCC
Q psy18231 238 GQPVRRWREHASKVTCVKFNEDSSVVISGSQ-DN--TVMMWDVKSRS 281 (540)
Q Consensus 238 ~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~-dg--~i~iwd~~~~~ 281 (540)
++.. .+..+........|+|||+.|+..+. .| .|.+.|+.+++
T Consensus 267 g~~~-~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~ 312 (419)
T PRK04043 267 KTLT-QITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGS 312 (419)
T ss_pred CcEE-EcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCC
Confidence 7643 34444433445689999987776653 33 46666666554
|
|
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=98.90 E-value=5.8e-06 Score=74.38 Aligned_cols=222 Identities=13% Similarity=0.065 Sum_probs=135.8
Q ss_pred EEEeCC-CCCEEEEeeCCCcEEEEcCCCCeeEEEeecCCcceeEEEEe-eCCCeEEEeeCCCeEEEEEcCCCceeEeccc
Q psy18231 169 HTRFPV-DGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAA-CDSSQIASGASDKSVILWEVTTGQPVRRWRE 246 (540)
Q Consensus 169 ~v~~sp-dg~~lat~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s-p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~ 246 (540)
++.|.+ ++.++++--..+.|..|+..+++... +.... ...+++. +++. |+.+...+ +.++|..+++.......
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~~~--~~G~~~~~~~g~-l~v~~~~~-~~~~d~~~g~~~~~~~~ 78 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-IDLPG--PNGMAFDRPDGR-LYVADSGG-IAVVDPDTGKVTVLADL 78 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-EESSS--EEEEEEECTTSE-EEEEETTC-EEEEETTTTEEEEEEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-EecCC--CceEEEEccCCE-EEEEEcCc-eEEEecCCCcEEEEeec
Confidence 567888 67777777778999999998876543 22222 6778888 5654 55555544 55559888855443332
Q ss_pred -----cCCceeEEEECCCCCEEEEecCCCcEEEEEecCCCCCCcchhhhhHhhhhcCCceeEEEEeecccccccccCcee
Q psy18231 247 -----HASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHLSNGLLT 321 (540)
Q Consensus 247 -----h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (540)
.....+.+++.++|++.++...... .. .
T Consensus 79 ~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~--------~~--~------------------------------------- 111 (246)
T PF08450_consen 79 PDGGVPFNRPNDVAVDPDGNLYVTDSGGGG--------AS--G------------------------------------- 111 (246)
T ss_dssp ETTCSCTEEEEEEEE-TTS-EEEEEECCBC--------TT--C-------------------------------------
T ss_pred cCCCcccCCCceEEEcCCCCEEEEecCCCc--------cc--c-------------------------------------
Confidence 3456788888888875554332110 00 0
Q ss_pred eEEEeeeecccccceeeeeeccceeEEEeecccceecccccccccccchhhhhhcccccEEEEEecCCeeEeeeCCCeEE
Q psy18231 322 KLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEARDSITSVHVSDHEILTASLDCRIR 401 (540)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~dg~i~ 401 (540)
. ..|.|.
T Consensus 112 ----------------------------------------------------~---------------------~~g~v~ 118 (246)
T PF08450_consen 112 ----------------------------------------------------I---------------------DPGSVY 118 (246)
T ss_dssp ----------------------------------------------------G---------------------GSEEEE
T ss_pred ----------------------------------------------------c---------------------cccceE
Confidence 0 003445
Q ss_pred EEeCCCCceEEeeeC-CceEEEEEecCCcEEE-eecCCCeEEEEeccccch----hhhh---ccCcCCcceEEEEecCCC
Q psy18231 402 RYDIRTGNLVTDYVG-EPIVDACFTRDCQCIL-TCSTDECLRLFDKATGEL----LEEY---KGHKSGDFRIECCLDSKD 472 (540)
Q Consensus 402 iwd~~~~~~~~~~~~-~~i~~~~~sp~~~~l~-~~~~dg~i~i~d~~~~~~----~~~~---~~~~~~v~~~~~~~s~~~ 472 (540)
.++.. ++......+ ...+.++|+|+++.|+ +-+..+.|..|++..... ...+ ....+..-.+ ++..+|
T Consensus 119 ~~~~~-~~~~~~~~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~--~vD~~G 195 (246)
T PF08450_consen 119 RIDPD-GKVTVVADGLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGL--AVDSDG 195 (246)
T ss_dssp EEETT-SEEEEEEEEESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEE--EEBTTS
T ss_pred EECCC-CeEEEEecCcccccceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcc--eEcCCC
Confidence 55555 333222222 4578999999998765 566788899998863221 1122 2111112234 889999
Q ss_pred CeEEEeeCCCcEEEEEecCCcceeEEEecccceeeeEEEEc-CCCcEEEe
Q psy18231 473 SQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSH-PTRKHIMS 521 (540)
Q Consensus 473 ~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s-~d~~~l~s 521 (540)
++.++....+.|.++|.. |+.+..+..+ ...+++++|. ++.+.|+.
T Consensus 196 ~l~va~~~~~~I~~~~p~-G~~~~~i~~p--~~~~t~~~fgg~~~~~L~v 242 (246)
T PF08450_consen 196 NLWVADWGGGRIVVFDPD-GKLLREIELP--VPRPTNCAFGGPDGKTLYV 242 (246)
T ss_dssp -EEEEEETTTEEEEEETT-SCEEEEEE-S--SSSEEEEEEESTTSSEEEE
T ss_pred CEEEEEcCCCEEEEECCC-ccEEEEEcCC--CCCEEEEEEECCCCCEEEE
Confidence 988888888999999965 9999888843 3479999994 66555543
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=98.90 E-value=3e-07 Score=82.50 Aligned_cols=144 Identities=14% Similarity=0.148 Sum_probs=95.5
Q ss_pred ecCCeeEeeeCCCeEEEEeCCCCceEEee-eCC-----ceEEEEEecCCcEEEeecCCCeEEEEeccccchhhhhccCcC
Q psy18231 386 VSDHEILTASLDCRIRRYDIRTGNLVTDY-VGE-----PIVDACFTRDCQCILTCSTDECLRLFDKATGELLEEYKGHKS 459 (540)
Q Consensus 386 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~-----~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~ 459 (540)
...+.+++++.++.++.+|..+|+.+... ... .........++..++++..++.|..+|.++|+.+..+.....
T Consensus 74 ~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~ 153 (238)
T PF13360_consen 74 VDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEP 153 (238)
T ss_dssp EETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT
T ss_pred ecccccccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCC
Confidence 34466777778889999999999998874 321 122333444578888888899999999999998777765442
Q ss_pred Ccc---------eEEEEecCCCCeEEEeeCCCcEEEEEecCCcceeEEEecccceeeeEEEEcCCCcEEEeec-CCeeEE
Q psy18231 460 GDF---------RIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC-GNNVKL 529 (540)
Q Consensus 460 ~v~---------~~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~-d~~i~i 529 (540)
... ... ....++ .++.++.++.+.-+|+.+++.+.... ...+..+ ...++..|+.++ ++.|..
T Consensus 154 ~~~~~~~~~~~~~~~-~~~~~~-~v~~~~~~g~~~~~d~~tg~~~w~~~----~~~~~~~-~~~~~~~l~~~~~~~~l~~ 226 (238)
T PF13360_consen 154 RGSSPISSFSDINGS-PVISDG-RVYVSSGDGRVVAVDLATGEKLWSKP----ISGIYSL-PSVDGGTLYVTSSDGRLYA 226 (238)
T ss_dssp -SS--EEEETTEEEE-EECCTT-EEEEECCTSSEEEEETTTTEEEEEEC----SS-ECEC-EECCCTEEEEEETTTEEEE
T ss_pred CCCcceeeecccccc-eEEECC-EEEEEcCCCeEEEEECCCCCEEEEec----CCCccCC-ceeeCCEEEEEeCCCEEEE
Confidence 211 111 122344 77777777864444999998664222 2223331 346678888887 999999
Q ss_pred EEccccc
Q psy18231 530 WTAEEDY 536 (540)
Q Consensus 530 w~~~~~~ 536 (540)
||+.++.
T Consensus 227 ~d~~tG~ 233 (238)
T PF13360_consen 227 LDLKTGK 233 (238)
T ss_dssp EETTTTE
T ss_pred EECCCCC
Confidence 9998863
|
... |
| >KOG4714|consensus | Back alignment and domain information |
|---|
Probab=98.86 E-value=4.1e-08 Score=82.35 Aligned_cols=216 Identities=15% Similarity=0.198 Sum_probs=128.2
Q ss_pred eeecCeEEEEeCCCCCEEEEeeCCCcEEEEcCCCCeeEE-EeecCCcceeEEEEeeCCCeEEEeeC-----CCeEEEEEc
Q psy18231 162 FVLSGLMHTRFPVDGSYCLTCGSDKKIKLWNPYRNLLLK-TYGGHAHEVNDATAACDSSQIASGAS-----DKSVILWEV 235 (540)
Q Consensus 162 ~h~~~v~~v~~spdg~~lat~~~dg~i~iwd~~~~~~~~-~~~~h~~~v~~l~~sp~~~~l~s~s~-----dg~i~iwd~ 235 (540)
.|.++-.+-+.+-.++.+++++.||.+.+.+.+....+. ....-...-.+.+....++.+.++.- -+..+.|++
T Consensus 87 ~~sep~p~~~~s~~~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~ 166 (319)
T KOG4714|consen 87 KNSEIDPNDACTMTDNRVCIGYADGSLAVFSTDKDLALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQDNFYANTL 166 (319)
T ss_pred ccCCCCCcccccccCCceEecCCCceEEEEechHHHhhhhhcccccccccccceeecccEEecCCcceEeeccceeeecc
Confidence 344444444555567789999999999999976521111 11111111122333334555554432 234566766
Q ss_pred CCCceeEeccccCCceeEEEECC-CCCEEEEecCCCcEEEEEecCCCCCCcchhhhhHhhhhcCCceeEEEEeecccccc
Q psy18231 236 TTGQPVRRWREHASKVTCVKFNE-DSSVVISGSQDNTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNH 314 (540)
Q Consensus 236 ~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (540)
+..+.+..-......|.+++-+| +.+.+++|+.||.+.+||.+....
T Consensus 167 ~p~~t~~~~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~-------------------------------- 214 (319)
T KOG4714|consen 167 DPIKTLIPSKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAM-------------------------------- 214 (319)
T ss_pred cccccccccccccccchhhhCCcccccEEEEecCCCeEEEEEcccccc--------------------------------
Confidence 54433322222234499999999 456788899999999999987631
Q ss_pred cccCceeeEEEeeeecccccceeeeeeccceeEEEeecccceecccccccccccchhhhhhcccccEEEEEecC---Cee
Q psy18231 315 LSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEARDSITSVHVSD---HEI 391 (540)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~---~~l 391 (540)
+...+..|+.++..+-|+| ..|
T Consensus 215 -------------------------------------------------------p~S~l~ahk~~i~eV~FHpk~p~~L 239 (319)
T KOG4714|consen 215 -------------------------------------------------------PVSLLKAHKAEIWEVHFHPKNPEHL 239 (319)
T ss_pred -------------------------------------------------------hHHHHHHhhhhhhheeccCCCchhe
Confidence 2236788999999999998 789
Q ss_pred EeeeCCCeEEEEeCCCCceEEeeeCCceEEEEEecCCcEEEeecCCCeEEEEeccccchhhh---hcc-CcCCcceEEEE
Q psy18231 392 LTASLDCRIRRYDIRTGNLVTDYVGEPIVDACFTRDCQCILTCSTDECLRLFDKATGELLEE---YKG-HKSGDFRIECC 467 (540)
Q Consensus 392 ~~~~~dg~i~iwd~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~---~~~-~~~~v~~~~~~ 467 (540)
+++++||.+..||..+. . ++.+++. ..+..|= ++.+++. +.+ -.+...++. .
T Consensus 240 ft~sedGslw~wdas~~-~-----------l~i~~~~---------s~~s~WL--sgD~v~s~i~i~~ll~~~~~Sin-s 295 (319)
T KOG4714|consen 240 FTCSEDGSLWHWDASTT-F-----------LSISNQA---------SVISSWL--SGDPVKSRIEITSLLPSRSLSIN-S 295 (319)
T ss_pred eEecCCCcEEEEcCCCc-e-----------EEecCcc---------ccccccc--cCCcccceEeeeccccccceeee-e
Confidence 99999999999997641 1 1122221 2223331 1111111 000 111122232 4
Q ss_pred ecCCCCeEEEeeCCCcEEEEE
Q psy18231 468 LDSKDSQIFCGSSDGKIYKWQ 488 (540)
Q Consensus 468 ~s~~~~~l~s~s~dg~i~iwd 488 (540)
|.--|..|++|+.-+.|++++
T Consensus 296 fDV~g~~lVcgtd~eaIyl~~ 316 (319)
T KOG4714|consen 296 FDVLGPCLVCGTDAEAIYLTR 316 (319)
T ss_pred eeccCceEEeccccceEEEec
Confidence 556688899999999999876
|
|
| >PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=98.85 E-value=1.1e-08 Score=61.85 Aligned_cols=39 Identities=28% Similarity=0.585 Sum_probs=37.0
Q ss_pred CeeEEEeecCCcceeEEEEeeCCCeEEEeeCCCeEEEEE
Q psy18231 196 NLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWE 234 (540)
Q Consensus 196 ~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~dg~i~iwd 234 (540)
++++.++.+|.+.|++++|+|++++|++++.|+.|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 467889999999999999999999999999999999997
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g .... |
| >KOG4649|consensus | Back alignment and domain information |
|---|
Probab=98.84 E-value=1.8e-05 Score=67.02 Aligned_cols=104 Identities=12% Similarity=0.106 Sum_probs=78.8
Q ss_pred CCEEEEeeCCCcEEEEcCCCCeeEEEeecCCcceeEEEEeeCCCeEEEeeCCCeEEEEEcCCCceeEeccccCCceeEEE
Q psy18231 176 GSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVK 255 (540)
Q Consensus 176 g~~lat~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~ 255 (540)
..+++.|+..+.+.--|..+|+.+.+-. -..+|.+-+.- -|.+++.|...|.+.+.+.++|+....+..-..-=....
T Consensus 23 kT~v~igSHs~~~~avd~~sG~~~We~i-lg~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a~ 100 (354)
T KOG4649|consen 23 KTLVVIGSHSGIVIAVDPQSGNLIWEAI-LGVRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVRAQ 100 (354)
T ss_pred ceEEEEecCCceEEEecCCCCcEEeehh-hCceeeeeeEE-ECCEEEEEEccCcEEEEEecchhheeeeeehhhhccceE
Confidence 4567788889999999999998876543 24445444433 477899999999999999999988776654322222344
Q ss_pred ECCCCCEEEEecCCCcEEEEEecCCC
Q psy18231 256 FNEDSSVVISGSQDNTVMMWDVKSRS 281 (540)
Q Consensus 256 ~~~~~~~l~s~~~dg~i~iwd~~~~~ 281 (540)
..+++..+..|+.|++....|.++..
T Consensus 101 ~d~~~glIycgshd~~~yalD~~~~~ 126 (354)
T KOG4649|consen 101 CDFDGGLIYCGSHDGNFYALDPKTYG 126 (354)
T ss_pred EcCCCceEEEecCCCcEEEecccccc
Confidence 56788999999999999999988765
|
|
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=98.84 E-value=4.8e-06 Score=74.01 Aligned_cols=100 Identities=5% Similarity=-0.042 Sum_probs=76.1
Q ss_pred eEEEEeCC-CCCEEEEeeCCC-cEEEEcCCCCeeEEEeecCCccee--EEEEeeCCCeEEEeeC-----CCeEEEEEcC-
Q psy18231 167 LMHTRFPV-DGSYCLTCGSDK-KIKLWNPYRNLLLKTYGGHAHEVN--DATAACDSSQIASGAS-----DKSVILWEVT- 236 (540)
Q Consensus 167 v~~v~~sp-dg~~lat~~~dg-~i~iwd~~~~~~~~~~~~h~~~v~--~l~~sp~~~~l~s~s~-----dg~i~iwd~~- 236 (540)
...++.+| ++..++.+-.-| ...+||..+++....+....+.-. .-.||+||++|++.-. .|.|-|||..
T Consensus 7 gH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~ 86 (305)
T PF07433_consen 7 GHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAAR 86 (305)
T ss_pred ccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcC
Confidence 45678888 556667777666 466899999998887754333322 3689999999998644 4899999998
Q ss_pred CCceeEeccccCCceeEEEECCCCCEEEEe
Q psy18231 237 TGQPVRRWREHASKVTCVKFNEDSSVVISG 266 (540)
Q Consensus 237 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~ 266 (540)
+.+.+..+..|.-.-..+.+.|||+.|+.+
T Consensus 87 ~~~ri~E~~s~GIGPHel~l~pDG~tLvVA 116 (305)
T PF07433_consen 87 GYRRIGEFPSHGIGPHELLLMPDGETLVVA 116 (305)
T ss_pred CcEEEeEecCCCcChhhEEEcCCCCEEEEE
Confidence 556777788777778889999999888776
|
|
| >KOG2695|consensus | Back alignment and domain information |
|---|
Probab=98.83 E-value=9e-09 Score=89.72 Aligned_cols=136 Identities=13% Similarity=0.214 Sum_probs=105.5
Q ss_pred cccEEEEEecC--CeeEeeeCCCeEEEEeCCCC-----ce-EEeeeCCceEEEEEec-CCcEEEeecCCCeEEEEecccc
Q psy18231 378 RDSITSVHVSD--HEILTASLDCRIRRYDIRTG-----NL-VTDYVGEPIVDACFTR-DCQCILTCSTDECLRLFDKATG 448 (540)
Q Consensus 378 ~~~v~~l~~~~--~~l~~~~~dg~i~iwd~~~~-----~~-~~~~~~~~i~~~~~sp-~~~~l~~~~~dg~i~i~d~~~~ 448 (540)
.+.|.++.|.. ++++.|+.+|.|..+|++.+ .+ ..-+++..|+++..-. ++++|++.+.+|+|++||.+--
T Consensus 252 ksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rlyh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~ 331 (425)
T KOG2695|consen 252 KSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLYHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRAT 331 (425)
T ss_pred chhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEEcCcchhhhhhhccccceEeeccCcCceeEeeehhh
Confidence 34455566655 88999999999999999865 23 3444567888887776 7889999999999999999877
Q ss_pred ch---hhhhccCcCCcceEEEEecCCCCeEEEeeCCCcEEEEEecCCcceeEEEec--ccceeeeEEEEc
Q psy18231 449 EL---LEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHS--VGKAVVNSLCSH 513 (540)
Q Consensus 449 ~~---~~~~~~~~~~v~~~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~--~~~~~v~~l~~s 513 (540)
++ +.++.+|.+...-+-+-..+....+++++.|...+||.+.++..+.+++.+ .....+.+++|.
T Consensus 332 K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tipf~~s~~e~d~~sv~~~ 401 (425)
T KOG2695|consen 332 KCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIPFPYSASEVDIPSVAFD 401 (425)
T ss_pred hcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccCceeeccCCCCccccccccceehh
Confidence 66 899999987666665566777888999999999999999999998888632 122235556654
|
|
| >KOG4714|consensus | Back alignment and domain information |
|---|
Probab=98.81 E-value=1.7e-07 Score=78.80 Aligned_cols=68 Identities=21% Similarity=0.303 Sum_probs=54.3
Q ss_pred cEEEEEecC---CeeEeeeCCCeEEEEeCCCCceEEee---eCCceEEEEEec-CCcEEEeecCCCeEEEEeccc
Q psy18231 380 SITSVHVSD---HEILTASLDCRIRRYDIRTGNLVTDY---VGEPIVDACFTR-DCQCILTCSTDECLRLFDKAT 447 (540)
Q Consensus 380 ~v~~l~~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~---~~~~i~~~~~sp-~~~~l~~~~~dg~i~i~d~~~ 447 (540)
.|.+++-+| +.+++|+.||.+-+||.+.......+ +..+++.+-|+| ++..|+++++||.+..||..+
T Consensus 181 ~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 181 AVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred cchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence 377788777 77888999999999999877443322 236799999999 677899999999999999764
|
|
| >KOG1275|consensus | Back alignment and domain information |
|---|
Probab=98.80 E-value=1.2e-07 Score=93.38 Aligned_cols=177 Identities=11% Similarity=0.113 Sum_probs=133.6
Q ss_pred CCCEEEEeeCCCcEEEEcCCCCeeEEEeecCCcceeEEEEeeCCCeEEEeeCCCeEEEEEcCCCceeEeccccCCceeEE
Q psy18231 175 DGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCV 254 (540)
Q Consensus 175 dg~~lat~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~ 254 (540)
++..++.|+....+..+|+.+.+..+...-..+.|+-+.. +++++.+|...|+|.+-|.++.+.++++..|++.|.++
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~--Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDf 223 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRY--NNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDF 223 (1118)
T ss_pred CCcceeecchhhheeeeecccceeeeeeeccCCceEEEEe--cCcEEEeecccceEEeecCCcCceeeeeeccccceeee
Confidence 4557788888888889999988887777655556665555 58899999999999999999999999999999999987
Q ss_pred EECCCCCEEEEecC---------CCcEEEEEecCCCCCCcchhhhhHhhhhcCCceeEEEEeecccccccccCceeeEEE
Q psy18231 255 KFNEDSSVVISGSQ---------DNTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHLSNGLLTKLVF 325 (540)
Q Consensus 255 ~~~~~~~~l~s~~~---------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (540)
.. .|+.|+++|. |.-|+|||++..+...-.
T Consensus 224 Dv--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI--------------------------------------- 262 (1118)
T KOG1275|consen 224 DV--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPI--------------------------------------- 262 (1118)
T ss_pred ec--cCCeEEEeecccccccccccchhhhhhhhhhhccCCc---------------------------------------
Confidence 66 5889999876 445789999887621111
Q ss_pred eeeecccccceeeeeeccceeEEEeecccceecccccccccccchhhhhhcccccEEEEEecC---CeeEeeeCCCeEEE
Q psy18231 326 AFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEARDSITSVHVSD---HEILTASLDCRIRR 402 (540)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~---~~l~~~~~dg~i~i 402 (540)
.-+.++ .-+.|+| ..+++++..|...+
T Consensus 263 -------------------------------------------------~~~~~P-~flrf~Psl~t~~~V~S~sGq~q~ 292 (1118)
T KOG1275|consen 263 -------------------------------------------------QFPYGP-QFLRFHPSLTTRLAVTSQSGQFQF 292 (1118)
T ss_pred -------------------------------------------------ccccCc-hhhhhcccccceEEEEecccceee
Confidence 000111 2345566 67899999999999
Q ss_pred Ee---CCCCce-EEee--eCCceEEEEEecCCcEEEeecCCCeEEEEe
Q psy18231 403 YD---IRTGNL-VTDY--VGEPIVDACFTRDCQCILTCSTDECLRLFD 444 (540)
Q Consensus 403 wd---~~~~~~-~~~~--~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d 444 (540)
-| +.+... +..+ .+..+..+++|++++.++.|..+|.|.+|.
T Consensus 293 vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 293 VDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred ccccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence 88 333211 1222 235699999999999999999999999997
|
|
| >KOG3914|consensus | Back alignment and domain information |
|---|
Probab=98.80 E-value=6.4e-08 Score=86.40 Aligned_cols=144 Identities=15% Similarity=0.181 Sum_probs=100.0
Q ss_pred CeeEeeeCCCeEEEEeCCCCce----EEeeeC-CceEEEEEecCCcEEEe---ecCCCeEEEEeccccchhhhhccCcCC
Q psy18231 389 HEILTASLDCRIRRYDIRTGNL----VTDYVG-EPIVDACFTRDCQCILT---CSTDECLRLFDKATGELLEEYKGHKSG 460 (540)
Q Consensus 389 ~~l~~~~~dg~i~iwd~~~~~~----~~~~~~-~~i~~~~~sp~~~~l~~---~~~dg~i~i~d~~~~~~~~~~~~~~~~ 460 (540)
.+++++..+....+++...... +..... ..-+++.|-.+...... .+....+.+|....+. ...+-+|-.-
T Consensus 75 ~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~-~~~~lGhvSm 153 (390)
T KOG3914|consen 75 RLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSGR-CEPILGHVSM 153 (390)
T ss_pred eEEEEEeCCCceEEEEEecCCCcceeeeEeecccCcceeeeeeccceEEEEeecCCceeeeeecccccC-cchhhhhhhh
Confidence 6677777777766666654432 222221 23334444444444444 3444556666655543 3455678888
Q ss_pred cceEEEEecCCCCeEEEeeCCCcEEEEEecCCcceeEEEecccceeeeEEEEcCCCcEEEeec-CCeeEEEEcccccC
Q psy18231 461 DFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC-GNNVKLWTAEEDYG 537 (540)
Q Consensus 461 v~~~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~-d~~i~iw~~~~~~~ 537 (540)
++.+ +++||+++|+++..|..|+|-.......+..+-. +|..-|..++.-++ ..|++++ |++|++||+.++-.
T Consensus 154 l~dV--avS~D~~~IitaDRDEkIRvs~ypa~f~Iesfcl-GH~eFVS~isl~~~-~~LlS~sGD~tlr~Wd~~sgk~ 227 (390)
T KOG3914|consen 154 LLDV--AVSPDDQFIITADRDEKIRVSRYPATFVIESFCL-GHKEFVSTISLTDN-YLLLSGSGDKTLRLWDITSGKL 227 (390)
T ss_pred hhee--eecCCCCEEEEecCCceEEEEecCcccchhhhcc-ccHhheeeeeeccC-ceeeecCCCCcEEEEecccCCc
Confidence 8877 8999999999999999999998877777776654 89999999999865 4577777 99999999988753
|
|
| >KOG1645|consensus | Back alignment and domain information |
|---|
Probab=98.78 E-value=7.3e-07 Score=79.77 Aligned_cols=93 Identities=11% Similarity=0.166 Sum_probs=79.3
Q ss_pred EEEEcCCCCeeEEEeecCCcceeEEEEeeCCC-eEEEeeCCCeEEEEEcCCCceeEeccccCCceeEEEECCCC-CEEEE
Q psy18231 188 IKLWNPYRNLLLKTYGGHAHEVNDATAACDSS-QIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDS-SVVIS 265 (540)
Q Consensus 188 i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~-~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~s 265 (540)
++..+..+.+....+.+|...|.+++|||..+ ++..++.+..|+|.|+++...+..+..| ..+++++|.-|. ++|+.
T Consensus 175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYa 253 (463)
T KOG1645|consen 175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYA 253 (463)
T ss_pred eEEeccCCcchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEE
Confidence 66666666666667778899999999999776 7889999999999999999988888777 789999998755 67788
Q ss_pred ecCCCcEEEEEecCCC
Q psy18231 266 GSQDNTVMMWDVKSRS 281 (540)
Q Consensus 266 ~~~dg~i~iwd~~~~~ 281 (540)
|-..|.|.+||++..+
T Consensus 254 Gl~nG~VlvyD~R~~~ 269 (463)
T KOG1645|consen 254 GLQNGMVLVYDMRQPE 269 (463)
T ss_pred eccCceEEEEEccCCC
Confidence 8889999999998765
|
|
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=98.75 E-value=5.4e-06 Score=73.72 Aligned_cols=188 Identities=14% Similarity=0.166 Sum_probs=125.9
Q ss_pred EEeCCCCCEEEEe-----eCCCcEEEEcCC-CCeeEEEeecCCcceeEEEEeeCCCeEEEeeC-----------------
Q psy18231 170 TRFPVDGSYCLTC-----GSDKKIKLWNPY-RNLLLKTYGGHAHEVNDATAACDSSQIASGAS----------------- 226 (540)
Q Consensus 170 v~~spdg~~lat~-----~~dg~i~iwd~~-~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~----------------- 226 (540)
-.||+||++|++. ...|.|-|||.. +.+.+.++..|.-.-..+.+.|||+.|+.+..
T Consensus 56 g~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~t 135 (305)
T PF07433_consen 56 GVFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDT 135 (305)
T ss_pred EEEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhh
Confidence 4699999999986 336899999998 67888889888877788999999988877632
Q ss_pred -CCeEEEEEcCCCceeEe--c--cccCCceeEEEECCCCCEEEEecCCCc-------EEEEEecCCCCCCcchhhhhHhh
Q psy18231 227 -DKSVILWEVTTGQPVRR--W--REHASKVTCVKFNEDSSVVISGSQDNT-------VMMWDVKSRSHHPIQVRCLNEAL 294 (540)
Q Consensus 227 -dg~i~iwd~~~~~~~~~--~--~~h~~~v~~~~~~~~~~~l~s~~~dg~-------i~iwd~~~~~~~~~~~~~~~~~~ 294 (540)
+..+...|..+|+.+.. + ..|...|..+++.++|..++..-..|. |-+++....
T Consensus 136 M~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~~-------------- 201 (305)
T PF07433_consen 136 MQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGGA-------------- 201 (305)
T ss_pred cCCceEEEecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCCc--------------
Confidence 23566667778887766 4 337778899999888765554332221 111111000
Q ss_pred hhcCCceeEEEEeecccccccccCceeeEEEeeeecccccceeeeeeccceeEEEeecccceecccccccccccchhhhh
Q psy18231 295 KEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQAL 374 (540)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (540)
+.. . .......
T Consensus 202 ----------------------------------------------------~~~--------------~---~~p~~~~ 212 (305)
T PF07433_consen 202 ----------------------------------------------------LRL--------------L---PAPEEQW 212 (305)
T ss_pred ----------------------------------------------------cee--------------c---cCChHHH
Confidence 000 0 0001123
Q ss_pred hcccccEEEEEecC--Cee-EeeeCCCeEEEEeCCCCceEEeeeCCceEEEEEecCCcEEEeecCCCeEEE
Q psy18231 375 KEARDSITSVHVSD--HEI-LTASLDCRIRRYDIRTGNLVTDYVGEPIVDACFTRDCQCILTCSTDECLRL 442 (540)
Q Consensus 375 ~~~~~~v~~l~~~~--~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~i 442 (540)
..-...+-+|++++ ..+ +++-..+.+.+||..+++.+....-..+..++-.+++ ++++.+ .|.+..
T Consensus 213 ~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~l~D~cGva~~~~~-f~~ssG-~G~~~~ 281 (305)
T PF07433_consen 213 RRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVPLPDACGVAPTDDG-FLVSSG-QGQLIR 281 (305)
T ss_pred HhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeeccccCceeeeeecCCc-eEEeCC-CccEEE
Confidence 34467788999988 445 4555678899999999999888877778888887777 555544 454433
|
|
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=98.75 E-value=1.6e-06 Score=83.89 Aligned_cols=219 Identities=14% Similarity=0.139 Sum_probs=135.6
Q ss_pred CCEEEEeeCCCcEEEEcCCCCeeEEEeecCCcceeE-EEEee--CCCeEEEeeCCCeEEEEEcCCCceeEeccccCC---
Q psy18231 176 GSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVND-ATAAC--DSSQIASGASDKSVILWEVTTGQPVRRWREHAS--- 249 (540)
Q Consensus 176 g~~lat~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~-l~~sp--~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~--- 249 (540)
+..++.+..++.+.-+|.++|+.+..+......+.. ..-+| .+..++.++.+|.+...|..+|+.+...+....
T Consensus 160 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~ 239 (394)
T PRK11138 160 DGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATAFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGA 239 (394)
T ss_pred CCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEECCEEEEEcCCCEEEEEEccCChhhheeccccCCCc
Confidence 345667777899999999999998887642111100 00111 234577788899999999999987665431110
Q ss_pred ----ceeEEEECC--CCCEEEEecCCCcEEEEEecCCCCCCcchhhhhHhhhhcCCceeEEEEeecccccccccCceeeE
Q psy18231 250 ----KVTCVKFNE--DSSVVISGSQDNTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHLSNGLLTKL 323 (540)
Q Consensus 250 ----~v~~~~~~~--~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (540)
....+.-+| .+..++.++.+|.+..+|..+++..-..
T Consensus 240 ~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~------------------------------------- 282 (394)
T PRK11138 240 TEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKR------------------------------------- 282 (394)
T ss_pred cchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEee-------------------------------------
Confidence 011111223 3456777778899999998887620000
Q ss_pred EEeeeecccccceeeeeeccceeEEEeecccceecccccccccccchhhhhhcccccEEEEEecCCeeEeeeCCCeEEEE
Q psy18231 324 VFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEARDSITSVHVSDHEILTASLDCRIRRY 403 (540)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~dg~i~iw 403 (540)
.+ .....+....+.+++++.+|.+..+
T Consensus 283 -------------------------------------------------~~----~~~~~~~~~~~~vy~~~~~g~l~al 309 (394)
T PRK11138 283 -------------------------------------------------EY----GSVNDFAVDGGRIYLVDQNDRVYAL 309 (394)
T ss_pred -------------------------------------------------cC----CCccCcEEECCEEEEEcCCCeEEEE
Confidence 00 0001123345678888899999999
Q ss_pred eCCCCceEEeeeC---CceEEEEEecCCcEEEeecCCCeEEEEeccccchhhhhccCcCCcceEEEEecCCCCeEEEeeC
Q psy18231 404 DIRTGNLVTDYVG---EPIVDACFTRDCQCILTCSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSS 480 (540)
Q Consensus 404 d~~~~~~~~~~~~---~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~s~~~~~l~s~s~ 480 (540)
|..+++.+-.... ....+... .+..|+.++.+|.++++|..+|+.+.+.+.....+..- ..+ .+..|+.++.
T Consensus 310 d~~tG~~~W~~~~~~~~~~~sp~v--~~g~l~v~~~~G~l~~ld~~tG~~~~~~~~~~~~~~s~-P~~--~~~~l~v~t~ 384 (394)
T PRK11138 310 DTRGGVELWSQSDLLHRLLTAPVL--YNGYLVVGDSEGYLHWINREDGRFVAQQKVDSSGFLSE-PVV--ADDKLLIQAR 384 (394)
T ss_pred ECCCCcEEEcccccCCCcccCCEE--ECCEEEEEeCCCEEEEEECCCCCEEEEEEcCCCcceeC-CEE--ECCEEEEEeC
Confidence 9999987654431 11222222 24567888999999999999999877665433333221 012 2457888999
Q ss_pred CCcEEEEEe
Q psy18231 481 DGKIYKWQL 489 (540)
Q Consensus 481 dg~i~iwd~ 489 (540)
||.|+.+++
T Consensus 385 ~G~l~~~~~ 393 (394)
T PRK11138 385 DGTVYAITR 393 (394)
T ss_pred CceEEEEeC
Confidence 999988764
|
|
| >PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=98.74 E-value=2.6e-08 Score=60.24 Aligned_cols=39 Identities=36% Similarity=0.752 Sum_probs=36.6
Q ss_pred CceeEeccccCCceeEEEECCCCCEEEEecCCCcEEEEE
Q psy18231 238 GQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWD 276 (540)
Q Consensus 238 ~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd 276 (540)
++++.++++|.+.|.+++|+|++++|++++.|+.|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 356788999999999999999999999999999999997
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g .... |
| >KOG0882|consensus | Back alignment and domain information |
|---|
Probab=98.70 E-value=5.2e-07 Score=81.79 Aligned_cols=241 Identities=12% Similarity=0.114 Sum_probs=163.4
Q ss_pred CCcceeEEEEeeCCCeEEEeeCCCeEEEEEcCC--C-ceeEeccccCCceeEEEECCCCCEEEEecC-CCcEEEEEecCC
Q psy18231 205 HAHEVNDATAACDSSQIASGASDKSVILWEVTT--G-QPVRRWREHASKVTCVKFNEDSSVVISGSQ-DNTVMMWDVKSR 280 (540)
Q Consensus 205 h~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~--~-~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~-dg~i~iwd~~~~ 280 (540)
|...|+.+.-. -.+++.+++.||.++.|--.. | +.+..+..|...|.+++.+-++.++.|.+. |..++++|+++.
T Consensus 8 hrd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~ 86 (558)
T KOG0882|consen 8 HRDVITHVFPT-KAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENF 86 (558)
T ss_pred ccceeeeEeee-hhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeecc
Confidence 77777776554 567899999999999997533 1 334456688999999999999999999887 999999999876
Q ss_pred CCCCcchhhhhHhhhhcCCceeEEEEeecccccccccCceeeEEEeeeecccccceeeeeeccceeEEEeecccceeccc
Q psy18231 281 SHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGD 360 (540)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (540)
......
T Consensus 87 Dminmi-------------------------------------------------------------------------- 92 (558)
T KOG0882|consen 87 DMINMI-------------------------------------------------------------------------- 92 (558)
T ss_pred chhhhc--------------------------------------------------------------------------
Confidence 521000
Q ss_pred ccccccccchhhhhhcccccEEEEEecC----CeeEee-eCCCeEEEEeCCCCceE----EeeeCCceEEEEEecCCcEE
Q psy18231 361 VTPISIHNSCFQALKEARDSITSVHVSD----HEILTA-SLDCRIRRYDIRTGNLV----TDYVGEPIVDACFTRDCQCI 431 (540)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~v~~l~~~~----~~l~~~-~~dg~i~iwd~~~~~~~----~~~~~~~i~~~~~sp~~~~l 431 (540)
.+....+.+..+ .++ ..++++ -.++.+.++|-....+. ..++-.+|..+.+.|.+..+
T Consensus 93 ------------KL~~lPg~a~wv-~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~ 159 (558)
T KOG0882|consen 93 ------------KLVDLPGFAEWV-TSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSA 159 (558)
T ss_pred ------------ccccCCCceEEe-cCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccce
Confidence 000111111111 111 233433 45788999998755432 23344799999999999999
Q ss_pred EeecCCCeEEEEeccc------cchhhhh---------ccCcCCcceEEEEecCCCCeEEEeeCCCcEEEEEecCCccee
Q psy18231 432 LTCSTDECLRLFDKAT------GELLEEY---------KGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQIS 496 (540)
Q Consensus 432 ~~~~~dg~i~i~d~~~------~~~~~~~---------~~~~~~v~~~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~ 496 (540)
++....|.|.-|.... .+....+ .-......++ .|+|+|..+.+-+.|..|++++..+++.++
T Consensus 160 vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~--Efsp~g~qistl~~DrkVR~F~~KtGklvq 237 (558)
T KOG0882|consen 160 VSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSF--EFSPDGAQISTLNPDRKVRGFVFKTGKLVQ 237 (558)
T ss_pred eeccccceeEeecCCCcccCccccccccccccchhhcccccccCccce--EEccccCcccccCcccEEEEEEeccchhhh
Confidence 9999999999998762 1111111 1122223344 899999999999999999999999987765
Q ss_pred EEEec------------------------------ccc-eeeeEEEEcCCCcEEEeecCCeeEEEEcccc
Q psy18231 497 TLIHS------------------------------VGK-AVVNSLCSHPTRKHIMSACGNNVKLWTAEED 535 (540)
Q Consensus 497 ~~~~~------------------------------~~~-~~v~~l~~s~d~~~l~s~~d~~i~iw~~~~~ 535 (540)
.+... .|. ..-+.+.|...|++|+-++==.|++.++.++
T Consensus 238 eiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~gikvin~~tn 307 (558)
T KOG0882|consen 238 EIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILGIKVINLDTN 307 (558)
T ss_pred hhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeecceeEEEEEeecC
Confidence 44210 011 2245677888899998887334777777654
|
|
| >KOG2695|consensus | Back alignment and domain information |
|---|
Probab=98.69 E-value=3.9e-08 Score=85.86 Aligned_cols=99 Identities=12% Similarity=0.227 Sum_probs=80.6
Q ss_pred EEeeCCCcEEEEcCCCCeeEEEeecCCcceeEEEEeeCCCeEEEeeCCCeEEEEEcCCC-----ceeEeccccCCceeEE
Q psy18231 180 LTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTG-----QPVRRWREHASKVTCV 254 (540)
Q Consensus 180 at~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~-----~~~~~~~~h~~~v~~~ 254 (540)
++.+.+-.|-+-|+++|... .|. .++.|.++.|...+++++.|..+|.|...|++.+ .+.+.+ -|.+.|+++
T Consensus 228 fs~G~sqqv~L~nvetg~~q-sf~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rl-yh~Ssvtsl 304 (425)
T KOG2695|consen 228 FSVGLSQQVLLTNVETGHQQ-SFQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRL-YHDSSVTSL 304 (425)
T ss_pred ecccccceeEEEEeeccccc-ccc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEE-EcCcchhhh
Confidence 44556778888898887543 333 5788999999998999999999999999999865 333333 589999999
Q ss_pred EECC-CCCEEEEecCCCcEEEEEecCCC
Q psy18231 255 KFNE-DSSVVISGSQDNTVMMWDVKSRS 281 (540)
Q Consensus 255 ~~~~-~~~~l~s~~~dg~i~iwd~~~~~ 281 (540)
.... ++++|.+.+.+|.|++||++.-+
T Consensus 305 q~Lq~s~q~LmaS~M~gkikLyD~R~~K 332 (425)
T KOG2695|consen 305 QILQFSQQKLMASDMTGKIKLYDLRATK 332 (425)
T ss_pred hhhccccceEeeccCcCceeEeeehhhh
Confidence 8877 78899999999999999998765
|
|
| >KOG2066|consensus | Back alignment and domain information |
|---|
Probab=98.67 E-value=2e-06 Score=83.98 Aligned_cols=185 Identities=13% Similarity=0.116 Sum_probs=133.8
Q ss_pred eecCeEEEEeCCCCCEEEEeeCCCcEEEEcCCCCeeEEEeecCCcceeEEEEeeCCCeEEEeeCCCeEEEEEcCCCceeE
Q psy18231 163 VLSGLMHTRFPVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPVR 242 (540)
Q Consensus 163 h~~~v~~v~~spdg~~lat~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~ 242 (540)
..+.++|++++ ++.++-|+.+|.|++.+.. +.. .+...|... ..+|.+++|||.||+|.|-.+-+.+...
T Consensus 38 ~~D~is~~av~--~~~~~~GtH~g~v~~~~~~-~~~-~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~ 107 (846)
T KOG2066|consen 38 QNDAISCCAVH--DKFFALGTHRGAVYLTTCQ-GNP-KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEIT 107 (846)
T ss_pred hhhHHHHHHhh--cceeeeccccceEEEEecC-Ccc-ccccccccc------ccCCceEEEecCCCcEEEeeccCCccce
Confidence 45667777776 5689999999999999964 443 333345544 5589999999999999999998888777
Q ss_pred eccccCCceeEEEECCC-----CCEEEEecCCCcEEEEEecCCCCCCcchhhhhHhhhhcCCceeEEEEeeccccccccc
Q psy18231 243 RWREHASKVTCVKFNED-----SSVVISGSQDNTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHLSN 317 (540)
Q Consensus 243 ~~~~h~~~v~~~~~~~~-----~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (540)
++. ...++.+++++|+ .+.+++||.-| +.++.-+-....
T Consensus 108 ~~d-f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk---------------------------------- 151 (846)
T KOG2066|consen 108 QYD-FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNK---------------------------------- 151 (846)
T ss_pred eEe-cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCc----------------------------------
Confidence 653 4568999999997 46899999888 666542211100
Q ss_pred CceeeEEEeeeecccccceeeeeeccceeEEEeecccceecccccccccccchhhhhhcccccEEEEEecCCeeEeeeCC
Q psy18231 318 GLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEARDSITSVHVSDHEILTASLD 397 (540)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~d 397 (540)
....+....++|.++.|..++++=++.+
T Consensus 152 ----------------------------------------------------~~v~l~~~eG~I~~i~W~g~lIAWand~ 179 (846)
T KOG2066|consen 152 ----------------------------------------------------DSVVLSEGEGPIHSIKWRGNLIAWANDD 179 (846)
T ss_pred ----------------------------------------------------cceeeecCccceEEEEecCcEEEEecCC
Confidence 0002345578999999999999988877
Q ss_pred CeEEEEeCCCCceEEeeeCC--------ceEEEEEecCCcEEEeecCCCeEEEEecccc
Q psy18231 398 CRIRRYDIRTGNLVTDYVGE--------PIVDACFTRDCQCILTCSTDECLRLFDKATG 448 (540)
Q Consensus 398 g~i~iwd~~~~~~~~~~~~~--------~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~ 448 (540)
| |++||..+++.+..+... .-..+.|.++.+++ .| ...+|+|..++.+
T Consensus 180 G-v~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~LV-IG-W~d~v~i~~I~~~ 235 (846)
T KOG2066|consen 180 G-VKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDRLV-IG-WGDSVKICSIKKR 235 (846)
T ss_pred C-cEEEeccccceeeccCCCCCCCCcccCCCceEecCCCeEE-Ee-cCCeEEEEEEecc
Confidence 7 899999999888777531 24456777765544 44 4457888888733
|
|
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=98.66 E-value=4.5e-05 Score=68.64 Aligned_cols=139 Identities=16% Similarity=0.131 Sum_probs=90.3
Q ss_pred hhhcccccceeeeecccccceeeeeecCeEEEEeC-CCCCEEEEeeCCCcEEEEcCCCCeeEEEeec-----CCcceeEE
Q psy18231 139 ILYELPKEWSIRVYRPLTVNRELFVLSGLMHTRFP-VDGSYCLTCGSDKKIKLWNPYRNLLLKTYGG-----HAHEVNDA 212 (540)
Q Consensus 139 ~~~~~~~~~~i~~~~~~~~~~~~~h~~~v~~v~~s-pdg~~lat~~~dg~i~iwd~~~~~~~~~~~~-----h~~~v~~l 212 (540)
+++.--..+.|..|++.+.............+++. +++++++ +.. +.+.++|+.+++....... .....+.+
T Consensus 14 l~~~D~~~~~i~~~~~~~~~~~~~~~~~~~G~~~~~~~g~l~v-~~~-~~~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~ 91 (246)
T PF08450_consen 14 LYWVDIPGGRIYRVDPDTGEVEVIDLPGPNGMAFDRPDGRLYV-ADS-GGIAVVDPDTGKVTVLADLPDGGVPFNRPNDV 91 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEESSSEEEEEEECTTSEEEE-EET-TCEEEEETTTTEEEEEEEEETTCSCTEEEEEE
T ss_pred EEEEEcCCCEEEEEECCCCeEEEEecCCCceEEEEccCCEEEE-EEc-CceEEEecCCCcEEEEeeccCCCcccCCCceE
Confidence 34444445667778777766555455557888888 6765544 444 4455669888865444332 34678899
Q ss_pred EEeeCCCeEEEeeCC--------CeEEEEEcCCCceeEeccccCCceeEEEECCCCCEEE-EecCCCcEEEEEecCCC
Q psy18231 213 TAACDSSQIASGASD--------KSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVI-SGSQDNTVMMWDVKSRS 281 (540)
Q Consensus 213 ~~sp~~~~l~s~s~d--------g~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~-s~~~dg~i~iwd~~~~~ 281 (540)
++.|+|++.++.... |.|..++.. ++. ..+...-...+.++|+|+++.|+ +-+..+.|..+++....
T Consensus 92 ~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~-~~~~~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~ 167 (246)
T PF08450_consen 92 AVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKV-TVVADGLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADG 167 (246)
T ss_dssp EE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEE-EEEEEEESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTT
T ss_pred EEcCCCCEEEEecCCCccccccccceEEECCC-CeE-EEEecCcccccceEECCcchheeecccccceeEEEeccccc
Confidence 999999988876654 456666665 443 33333456678999999998765 55667888888886543
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >KOG3617|consensus | Back alignment and domain information |
|---|
Probab=98.64 E-value=1.1e-06 Score=85.93 Aligned_cols=109 Identities=7% Similarity=0.078 Sum_probs=89.0
Q ss_pred EEEeCCCCCEEEEeeC----CCcEEEEcCCCCeeEEEeecCCcceeEEEEeeCCCeEEEeeCCCeEEEEEcCCCceeEec
Q psy18231 169 HTRFPVDGSYCLTCGS----DKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPVRRW 244 (540)
Q Consensus 169 ~v~~spdg~~lat~~~----dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~ 244 (540)
-.+|+|...++|+++. .|.|.||- ++|++..... ..-.+++++|+|..-.|+.|-.-|.+.+|...+.+.-...
T Consensus 20 i~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt-~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~htv~ 97 (1416)
T KOG3617|consen 20 ISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDVT-YPVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHTVV 97 (1416)
T ss_pred ccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCcccc-cceehhhhccChHHHHHhhccccceeEEEecCCceeeeec
Confidence 3468888888887753 58888885 5676544332 2234677999999888999999999999998887777777
Q ss_pred cccCCceeEEEECCCCCEEEEecCCCcEEEEEecC
Q psy18231 245 REHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKS 279 (540)
Q Consensus 245 ~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 279 (540)
..|..+|..+.||++|..++++..-|.+.+|....
T Consensus 98 ~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~ 132 (1416)
T KOG3617|consen 98 ETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDV 132 (1416)
T ss_pred cCCCCCceeEEecCCCCeEEEcCCCceeEEEEeee
Confidence 78999999999999999999999999999998864
|
|
| >TIGR00736 nifR3_rel_arch TIM-barrel protein, putative | Back alignment and domain information |
|---|
Probab=98.61 E-value=5.1e-08 Score=83.92 Aligned_cols=56 Identities=18% Similarity=0.245 Sum_probs=53.0
Q ss_pred CCCCCEEEEEecCChhHHHHHHHHhcCCCCeEeeccCCCceEEEeccccceecccc
Q psy18231 68 PEDTPLVVQFASNNHDDFVRATQYVAPHCNGVDLNCGCPQRWAIKEGYGCALLSKQ 123 (540)
Q Consensus 68 ~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~id~~~gc~~~~~~~~g~g~~l~~~~ 123 (540)
.+..|+++|+.+++++++.++++.+.++++.||+|+|||+.++.+.|.|++||+++
T Consensus 65 ~~~~~vivnv~~~~~ee~~~~a~~v~~~~d~IdiN~gCP~~~v~~~g~G~~Ll~dp 120 (231)
T TIGR00736 65 ESRALVSVNVRFVDLEEAYDVLLTIAEHADIIEINAHCRQPEITEIGIGQELLKNK 120 (231)
T ss_pred hhcCCEEEEEecCCHHHHHHHHHHHhcCCCEEEEECCCCcHHHcCCCCchhhcCCH
Confidence 45679999999999999999999999999999999999999999999999999985
|
Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins. |
| >KOG2114|consensus | Back alignment and domain information |
|---|
Probab=98.55 E-value=1.9e-05 Score=78.01 Aligned_cols=212 Identities=15% Similarity=0.193 Sum_probs=130.4
Q ss_pred EEeeCCCeEEEeeCCCeEEEEEcCCCceeEeccccCCc-eeEEEECCCCCEEEEecCCCc-----EEEEEecCCCCCC-c
Q psy18231 213 TAACDSSQIASGASDKSVILWEVTTGQPVRRWREHASK-VTCVKFNEDSSVVISGSQDNT-----VMMWDVKSRSHHP-I 285 (540)
Q Consensus 213 ~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~-v~~~~~~~~~~~l~s~~~dg~-----i~iwd~~~~~~~~-~ 285 (540)
+|++.+..++.|+.+|.|.+.+- +-+.++.++.+... |..+....+.++|++.+.|+. +++|+++..+... .
T Consensus 30 c~~s~~~~vvigt~~G~V~~Ln~-s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP 108 (933)
T KOG2114|consen 30 CCSSSTGSVVIGTADGRVVILNS-SFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSP 108 (933)
T ss_pred EEcCCCceEEEeeccccEEEecc-cceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCCc
Confidence 56778889999999999888762 44555778887777 554444444478888887764 8999997653100 0
Q ss_pred chhhhhHhhhhcCCceeEEEEeecccccccccCceeeEEEeeeecccccceeeeeeccceeEEEeecccceecccccccc
Q psy18231 286 QVRCLNEALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPIS 365 (540)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 365 (540)
+ +.... .++.
T Consensus 109 ~------------------------------------c~~~~--------------------ri~~-------------- 118 (933)
T KOG2114|consen 109 Q------------------------------------CLYEH--------------------RIFT-------------- 118 (933)
T ss_pred c------------------------------------eeeee--------------------eeec--------------
Confidence 0 00000 0000
Q ss_pred cccchhhhhhcccccEEEEEecC--CeeEeeeCCCeEEEEeCCC----C-ceEEeee-CCceEEEEEecCCcEEEeecCC
Q psy18231 366 IHNSCFQALKEARDSITSVHVSD--HEILTASLDCRIRRYDIRT----G-NLVTDYV-GEPIVDACFTRDCQCILTCSTD 437 (540)
Q Consensus 366 ~~~~~~~~~~~~~~~v~~l~~~~--~~l~~~~~dg~i~iwd~~~----~-~~~~~~~-~~~i~~~~~sp~~~~l~~~~~d 437 (540)
........++.+++.+. ..+++|-.+|.|..+.-+- + +...... ..+|+.+++..+++.++....-
T Consensus 119 ------~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~lFv~Tt 192 (933)
T KOG2114|consen 119 ------IKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVLFVATT 192 (933)
T ss_pred ------cCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCceeEEEEec
Confidence 01111245677778877 8899999999999885331 1 1111112 3799999999998874444445
Q ss_pred CeEEEEeccccch-hhhhccCcCCcceEEEEecCCCCeEEEeeCCCcEEEEEecCCcceeEEEecccce
Q psy18231 438 ECLRLFDKATGEL-LEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKA 505 (540)
Q Consensus 438 g~i~i~d~~~~~~-~~~~~~~~~~v~~~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~ 505 (540)
..|.+|.+....+ ...+..|.....+. ++++....+++++. ..+.+|+.....+-.++.. +|..
T Consensus 193 ~~V~~y~l~gr~p~~~~ld~~G~~lnCs--s~~~~t~qfIca~~-e~l~fY~sd~~~~cfaf~~-g~kk 257 (933)
T KOG2114|consen 193 EQVMLYSLSGRTPSLKVLDNNGISLNCS--SFSDGTYQFICAGS-EFLYFYDSDGRGPCFAFEV-GEKK 257 (933)
T ss_pred ceeEEEEecCCCcceeeeccCCccceee--ecCCCCccEEEecC-ceEEEEcCCCcceeeeecC-CCeE
Confidence 6799999874432 33455566555555 55554443555544 4699999776555555542 4443
|
|
| >cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases | Back alignment and domain information |
|---|
Probab=98.54 E-value=3.3e-05 Score=76.67 Aligned_cols=106 Identities=15% Similarity=0.183 Sum_probs=71.1
Q ss_pred eeEeeeCCCeEEEEeCCCCceEEeeeCCceEEEEEecCCcEEEee------------------cCCCeEEEEeccccchh
Q psy18231 390 EILTASLDCRIRRYDIRTGNLVTDYVGEPIVDACFTRDCQCILTC------------------STDECLRLFDKATGELL 451 (540)
Q Consensus 390 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~------------------~~dg~i~i~d~~~~~~~ 451 (540)
.+++++.+|.+...|.++|+.+...... ...++.+| ..++.+ ..+|.+.-.|+.+|+.+
T Consensus 303 ~V~~g~~~G~l~ald~~tG~~~W~~~~~-~~~~~~~~--~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~ 379 (488)
T cd00216 303 AIVHAPKNGFFYVLDRTTGKLISARPEV-EQPMAYDP--GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVV 379 (488)
T ss_pred EEEEECCCceEEEEECCCCcEeeEeEee-ccccccCC--ceEEEccccccccCcccccCCCCCCCceEEEEEeCCCCcEe
Confidence 5778889999999999999988765421 11233344 222221 24678888999998877
Q ss_pred hhhccCc--------CCcceEEEEecCCCCeEEEeeCCCcEEEEEecCCcceeEEEe
Q psy18231 452 EEYKGHK--------SGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIH 500 (540)
Q Consensus 452 ~~~~~~~--------~~v~~~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~ 500 (540)
-+..... .+...- .....+..|+.++.||.|+.+|..+|+.+-+.+.
T Consensus 380 W~~~~~~~~~~~~~g~~~~~~--~~~~~g~~v~~g~~dG~l~ald~~tG~~lW~~~~ 434 (488)
T cd00216 380 WEKREGTIRDSWNIGFPHWGG--SLATAGNLVFAGAADGYFRAFDATTGKELWKFRT 434 (488)
T ss_pred eEeeCCccccccccCCcccCc--ceEecCCeEEEECCCCeEEEEECCCCceeeEEEC
Confidence 5554321 111111 1112457899999999999999999999988873
|
The alignment model contains an 8-bladed beta-propeller. |
| >KOG1645|consensus | Back alignment and domain information |
|---|
Probab=98.53 E-value=8.1e-06 Score=73.28 Aligned_cols=130 Identities=8% Similarity=0.048 Sum_probs=89.5
Q ss_pred eeeeccccc---ceeeeeecCeEEEEeCCCCC-EEEEeeCCCcEEEEcCCCCeeEEEeecCCcceeEEEEeeCC-CeEEE
Q psy18231 149 IRVYRPLTV---NRELFVLSGLMHTRFPVDGS-YCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDS-SQIAS 223 (540)
Q Consensus 149 i~~~~~~~~---~~~~~h~~~v~~v~~spdg~-~lat~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~-~~l~s 223 (540)
++..+..+. .-...|...|..++|||..+ ++..++.+.+|+|.|+++...+..+..| ..+++++|.-|. ++|..
T Consensus 175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYa 253 (463)
T KOG1645|consen 175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYA 253 (463)
T ss_pred eEEeccCCcchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEE
Confidence 444444433 23456888999999999877 6778999999999999999999998877 889999998754 56778
Q ss_pred eeCCCeEEEEEcCCCcee-Eeccc--cCCceeEEEECC------CCCEEEEecCCCcEEEEEecCCC
Q psy18231 224 GASDKSVILWEVTTGQPV-RRWRE--HASKVTCVKFNE------DSSVVISGSQDNTVMMWDVKSRS 281 (540)
Q Consensus 224 ~s~dg~i~iwd~~~~~~~-~~~~~--h~~~v~~~~~~~------~~~~l~s~~~dg~i~iwd~~~~~ 281 (540)
|-.+|.|.|||++..+-. ..+.+ ...+|..++.-+ .+.+|+..+. .+..|++....
T Consensus 254 Gl~nG~VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt--~l~f~ei~~s~ 318 (463)
T KOG1645|consen 254 GLQNGMVLVYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALT--VLQFYEIVFSA 318 (463)
T ss_pred eccCceEEEEEccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeeh--hhhhhhhhccc
Confidence 888999999999865422 22221 233444444332 3444444443 25667665443
|
|
| >PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=98.52 E-value=0.00021 Score=64.61 Aligned_cols=255 Identities=10% Similarity=0.186 Sum_probs=143.4
Q ss_pred CcEEEEcCCCCeeEEEeecCCcceeEEEEeeCCCeEEEeeC----------CCeEEEEEcCCCceeEeccccCC-c----
Q psy18231 186 KKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGAS----------DKSVILWEVTTGQPVRRWREHAS-K---- 250 (540)
Q Consensus 186 g~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~----------dg~i~iwd~~~~~~~~~~~~h~~-~---- 250 (540)
+.+.|+|..+++.+-.+.. +-.-.+..+||++.+.+++. .-.|.+||..+-+....+.-... .
T Consensus 17 ~rv~viD~d~~k~lGmi~~--g~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~ 94 (342)
T PF06433_consen 17 SRVYVIDADSGKLLGMIDT--GFLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVV 94 (342)
T ss_dssp EEEEEEETTTTEEEEEEEE--ESSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS
T ss_pred ceEEEEECCCCcEEEEeec--ccCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheec
Confidence 5799999999998877753 33344678999999887532 34699999999877665432221 1
Q ss_pred --eeEEEECCCCCEEEEec--CCCcEEEEEecCCCCCCcchhhhhHhhhhcCCceeEEEEeecccccccccCceeeEEEe
Q psy18231 251 --VTCVKFNEDSSVVISGS--QDNTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFA 326 (540)
Q Consensus 251 --v~~~~~~~~~~~l~s~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (540)
...++++.|+++++... ---+|.|-|+...+.
T Consensus 95 ~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kv-------------------------------------------- 130 (342)
T PF06433_consen 95 PYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKV-------------------------------------------- 130 (342)
T ss_dssp --GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEE--------------------------------------------
T ss_pred ccccceEEccCCcEEEEEccCCCCeEEEEECCCCce--------------------------------------------
Confidence 12334455555444321 122344444444331
Q ss_pred eeecccccceeeeeeccceeEEEeecccceecccccccccccchhhhhhcccccEEEEEecCCeeEeeeCCCeEEEEeCC
Q psy18231 327 FRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEARDSITSVHVSDHEILTASLDCRIRRYDIR 406 (540)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~dg~i~iwd~~ 406 (540)
+.++ .-.+...-.-..+..+.+-|.||++.-..+.
T Consensus 131 -------------------------------v~ei--------------~~PGC~~iyP~~~~~F~~lC~DGsl~~v~Ld 165 (342)
T PF06433_consen 131 -------------------------------VGEI--------------DTPGCWLIYPSGNRGFSMLCGDGSLLTVTLD 165 (342)
T ss_dssp -------------------------------EEEE--------------EGTSEEEEEEEETTEEEEEETTSCEEEEEET
T ss_pred -------------------------------eeee--------------cCCCEEEEEecCCCceEEEecCCceEEEEEC
Confidence 0000 0011111111123668888899999888887
Q ss_pred -CCceEEeeeC------Cc-eEEEEEecCCcEEEeecCCCeEEEEeccccchh--hhhc--------c--CcCCcceEEE
Q psy18231 407 -TGNLVTDYVG------EP-IVDACFTRDCQCILTCSTDECLRLFDKATGELL--EEYK--------G--HKSGDFRIEC 466 (540)
Q Consensus 407 -~~~~~~~~~~------~~-i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~--~~~~--------~--~~~~v~~~~~ 466 (540)
.|+...+... .+ +..-+++..+..++--+.+|.|+-.|+...... ..+. . -.+.-..+
T Consensus 166 ~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~-- 243 (342)
T PF06433_consen 166 ADGKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLI-- 243 (342)
T ss_dssp STSSEEEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-E--
T ss_pred CCCCEeEeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeee--
Confidence 4554432211 22 233445555555555678888888877544210 1110 0 01111223
Q ss_pred EecCCCCeEEEeeC---CC-------cEEEEEecCCcceeEEEecccceeeeEEEEcCCCc-EEEee-c-CCeeEEEEcc
Q psy18231 467 CLDSKDSQIFCGSS---DG-------KIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRK-HIMSA-C-GNNVKLWTAE 533 (540)
Q Consensus 467 ~~s~~~~~l~s~s~---dg-------~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~-~l~s~-~-d~~i~iw~~~ 533 (540)
++++..+.|++--. ++ .|.++|+.+++.+.++.. ..++.+|+.+.|.+ +|++. . ++.+.+||..
T Consensus 244 A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l---~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~ 320 (342)
T PF06433_consen 244 AYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPL---EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAA 320 (342)
T ss_dssp EEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEE---EEEESEEEEESSSS-EEEEEETTTTEEEEEETT
T ss_pred eeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeC---CCccceEEEccCCCcEEEEEcCCCCeEEEEeCc
Confidence 67766655554321 11 588889999999999973 45688999998875 66554 4 8999999998
Q ss_pred ccc
Q psy18231 534 EDY 536 (540)
Q Consensus 534 ~~~ 536 (540)
++.
T Consensus 321 tGk 323 (342)
T PF06433_consen 321 TGK 323 (342)
T ss_dssp T--
T ss_pred CCc
Confidence 864
|
4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). |
| >KOG4649|consensus | Back alignment and domain information |
|---|
Probab=98.49 E-value=0.00055 Score=58.33 Aligned_cols=105 Identities=9% Similarity=-0.005 Sum_probs=73.3
Q ss_pred CCCEEEEeeCCCcEEEEcCCCCeeEEEeecCCcceeEEEEeeCCCeEEEeeCCCeEEEEEcCCCceeEeccccCCceeEE
Q psy18231 175 DGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCV 254 (540)
Q Consensus 175 dg~~lat~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~ 254 (540)
-|++++.|...|.+++.+.++|.....+..-..--......+++.++..++.|++....|..+..++...+...+...+-
T Consensus 62 vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP 141 (354)
T KOG4649|consen 62 VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSP 141 (354)
T ss_pred ECCEEEEEEccCcEEEEEecchhheeeeeehhhhccceEEcCCCceEEEecCCCcEEEecccccceEEecccCCceeccc
Confidence 46789999999999999999998888776433222234456689999999999999999999999888876544444444
Q ss_pred EECCCCCEEEEecCCCcEEEEEecC
Q psy18231 255 KFNEDSSVVISGSQDNTVMMWDVKS 279 (540)
Q Consensus 255 ~~~~~~~~l~s~~~dg~i~iwd~~~ 279 (540)
+..|-...|+.+...|.+.--....
T Consensus 142 ~i~~g~~sly~a~t~G~vlavt~~~ 166 (354)
T KOG4649|consen 142 VIAPGDGSLYAAITAGAVLAVTKNP 166 (354)
T ss_pred eecCCCceEEEEeccceEEEEccCC
Confidence 5555223344444455554444333
|
|
| >cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases | Back alignment and domain information |
|---|
Probab=98.49 E-value=5.6e-05 Score=75.09 Aligned_cols=282 Identities=12% Similarity=0.110 Sum_probs=155.3
Q ss_pred CCEEEEeeCCCcEEEEcCCCCeeEEEeecCCc------cee--EEEEeeCCCeEEEeeCCCeEEEEEcCCCceeEecccc
Q psy18231 176 GSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAH------EVN--DATAACDSSQIASGASDKSVILWEVTTGQPVRRWREH 247 (540)
Q Consensus 176 g~~lat~~~dg~i~iwd~~~~~~~~~~~~h~~------~v~--~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h 247 (540)
+..++.++.++.+.-.|..+|+.+.++..... .+. .+... ++..++.++.++.|.-+|.++|+.+..+...
T Consensus 61 ~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~-~~~~V~v~~~~g~v~AlD~~TG~~~W~~~~~ 139 (488)
T cd00216 61 DGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYW-DPRKVFFGTFDGRLVALDAETGKQVWKFGNN 139 (488)
T ss_pred CCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEc-cCCeEEEecCCCeEEEEECCCCCEeeeecCC
Confidence 44566777789999999999998877753322 110 11111 2267888889999999999999998776533
Q ss_pred CCc--eeEEEECC--CCCEEEEec---------CCCcEEEEEecCCCCCCcchhhhhHhhhhcCCceeEEEEeecccccc
Q psy18231 248 ASK--VTCVKFNE--DSSVVISGS---------QDNTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNH 314 (540)
Q Consensus 248 ~~~--v~~~~~~~--~~~~l~s~~---------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (540)
... -..+.-+| .+..++.++ .+|.+..+|..+++..-..
T Consensus 140 ~~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~---------------------------- 191 (488)
T cd00216 140 DQVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRF---------------------------- 191 (488)
T ss_pred CCcCcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCceeeEe----------------------------
Confidence 221 01111122 124455543 3577888888887631111
Q ss_pred cccCceeeEEEeeeecccccceeeeeeccceeEEEeecccceecccccccccccchhhhhhccc-ccE-EEEEecC--Ce
Q psy18231 315 LSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEAR-DSI-TSVHVSD--HE 390 (540)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v-~~l~~~~--~~ 390 (540)
......... ...+ .... ....+. ..+ ...++++ ..
T Consensus 192 ---------------~~~~~~~~~-----------------~~~~--------~~~~-~~~~~~g~~vw~~pa~d~~~g~ 230 (488)
T cd00216 192 ---------------YTTEPDPNA-----------------FPTW--------GPDR-QMWGPGGGTSWASPTYDPKTNL 230 (488)
T ss_pred ---------------eccCCCcCC-----------------CCCC--------CCCc-ceecCCCCCccCCeeEeCCCCE
Confidence 000000000 0000 0000 000000 011 1123332 56
Q ss_pred eEeeeCCC------------------eEEEEeCCCCceEEeeeC--CceE------EEEEe----cCCc---EEEeecCC
Q psy18231 391 ILTASLDC------------------RIRRYDIRTGNLVTDYVG--EPIV------DACFT----RDCQ---CILTCSTD 437 (540)
Q Consensus 391 l~~~~~dg------------------~i~iwd~~~~~~~~~~~~--~~i~------~~~~s----p~~~---~l~~~~~d 437 (540)
++.++.++ .|.-+|.++++.+-.++. +... ...+. -++. .+++++.+
T Consensus 231 V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~ 310 (488)
T cd00216 231 VYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKN 310 (488)
T ss_pred EEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCC
Confidence 66666554 788999999998877642 1111 11111 1333 67888899
Q ss_pred CeEEEEeccccchhhhhccCcCCcceEEEEecCCCCeEEEe------------------eCCCcEEEEEecCCcceeEEE
Q psy18231 438 ECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCG------------------SSDGKIYKWQLVDSSQISTLI 499 (540)
Q Consensus 438 g~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~s~~~~~l~s~------------------s~dg~i~iwd~~~~~~~~~~~ 499 (540)
|.+..+|.++|+.+-....... .+ +.+| ..++.+ ..+|.|.-.|+.+|+.+-+..
T Consensus 311 G~l~ald~~tG~~~W~~~~~~~---~~--~~~~--~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~ 383 (488)
T cd00216 311 GFFYVLDRTTGKLISARPEVEQ---PM--AYDP--GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKR 383 (488)
T ss_pred ceEEEEECCCCcEeeEeEeecc---cc--ccCC--ceEEEccccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEee
Confidence 9999999999998766542211 11 2333 223322 246788899999998877776
Q ss_pred ecccc------eee--eEEEEcCCCcEEEeec-CCeeEEEEccccc
Q psy18231 500 HSVGK------AVV--NSLCSHPTRKHIMSAC-GNNVKLWTAEEDY 536 (540)
Q Consensus 500 ~~~~~------~~v--~~l~~s~d~~~l~s~~-d~~i~iw~~~~~~ 536 (540)
...+. .+. ..+.. .+..|+.++ ||.|..+|.++|.
T Consensus 384 ~~~~~~~~~~g~~~~~~~~~~--~g~~v~~g~~dG~l~ald~~tG~ 427 (488)
T cd00216 384 EGTIRDSWNIGFPHWGGSLAT--AGNLVFAGAADGYFRAFDATTGK 427 (488)
T ss_pred CCccccccccCCcccCcceEe--cCCeEEEECCCCeEEEEECCCCc
Confidence 32111 111 12222 456788888 9999999987763
|
The alignment model contains an 8-bladed beta-propeller. |
| >PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A | Back alignment and domain information |
|---|
Probab=98.47 E-value=0.00026 Score=65.30 Aligned_cols=87 Identities=11% Similarity=0.016 Sum_probs=49.1
Q ss_pred EeCCCCCEEEEee-CCC--cEEEEcCCCCeeEEEeecCCcceeEEEEeeCCCeEEEeeCCCeEEEEEcCCCceeEecccc
Q psy18231 171 RFPVDGSYCLTCG-SDK--KIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPVRRWREH 247 (540)
Q Consensus 171 ~~spdg~~lat~~-~dg--~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h 247 (540)
+|.+||+.|+-++ .|| .+.+.|+.+++..+.-.+.........++|+++.++-...+..++-.|+++.+....+...
T Consensus 42 ~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~p 121 (386)
T PF14583_consen 42 CFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEERVVYEVP 121 (386)
T ss_dssp -B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--EEEEEE--
T ss_pred CcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCcEEEEEECC
Confidence 5788997766444 454 5666688888765544432333446778888888876666678999999998766656556
Q ss_pred CCceeEEEEC
Q psy18231 248 ASKVTCVKFN 257 (540)
Q Consensus 248 ~~~v~~~~~~ 257 (540)
...+-...|.
T Consensus 122 ~~~~g~gt~v 131 (386)
T PF14583_consen 122 DDWKGYGTWV 131 (386)
T ss_dssp TTEEEEEEEE
T ss_pred ccccccccee
Confidence 6666555553
|
|
| >KOG3621|consensus | Back alignment and domain information |
|---|
Probab=98.46 E-value=1.1e-05 Score=77.74 Aligned_cols=120 Identities=16% Similarity=0.198 Sum_probs=94.0
Q ss_pred eeeeecCeEEEEeCCCCCEEEEeeCCCcEEEEcCCCCeeEEEe-ecCCcceeEEEEeeCCCeEEEeeCCCeEEEEEcCCC
Q psy18231 160 ELFVLSGLMHTRFPVDGSYCLTCGSDKKIKLWNPYRNLLLKTY-GGHAHEVNDATAACDSSQIASGASDKSVILWEVTTG 238 (540)
Q Consensus 160 ~~~h~~~v~~v~~spdg~~lat~~~dg~i~iwd~~~~~~~~~~-~~h~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~ 238 (540)
...|...|.--+++..+++++.|+..|.+.+|+-..++....- .+-.+.+..+..|++..++|.|+..|.|.++-++.+
T Consensus 29 ~~~~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~ 108 (726)
T KOG3621|consen 29 PGFFPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKE 108 (726)
T ss_pred cccCcceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhcc
Confidence 3446666777778888999999999999999997766544332 234556667788888889999999999999988764
Q ss_pred cee---Ee---ccccCCceeEEEECCCCCEEEEecCCCcEEEEEecC
Q psy18231 239 QPV---RR---WREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKS 279 (540)
Q Consensus 239 ~~~---~~---~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 279 (540)
.+- .. -+.|...|++++|++++..+++|...|.|..-.+..
T Consensus 109 ~p~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 109 LPRDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred CCCcceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence 321 11 124788999999999999999999999999888776
|
|
| >PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=98.46 E-value=5.2e-05 Score=72.07 Aligned_cols=297 Identities=17% Similarity=0.149 Sum_probs=150.2
Q ss_pred CCCCCEEEEe---------eCCCcEEEEcCCCCeeEEEeecCCcceeEEEEeeCCCeEEEeeCCCeEEEEEcCCCceeEe
Q psy18231 173 PVDGSYCLTC---------GSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPVRR 243 (540)
Q Consensus 173 spdg~~lat~---------~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~ 243 (540)
|||+++++.. +..+.+.|+|+++++....... ...+....|||+|+.+|-.. ++.|.+++..+++..+.
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~-~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~l 78 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPP-PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQL 78 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-E-ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEES
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCC-ccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEe
Confidence 6889888763 2357899999998765543332 67789999999999998886 47899999877754432
Q ss_pred cc-c-------c---------CCceeEEEECCCCCEEEEecCC-CcEEEEEecCCCCCCcchhhhhHhhhhcCCceeEEE
Q psy18231 244 WR-E-------H---------ASKVTCVKFNEDSSVVISGSQD-NTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVH 305 (540)
Q Consensus 244 ~~-~-------h---------~~~v~~~~~~~~~~~l~s~~~d-g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (540)
.. + - -+.-..+.||||+++|+....| ..|..+.+........+ -....
T Consensus 79 T~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~--------------yp~~~ 144 (353)
T PF00930_consen 79 TTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQ--------------YPEVE 144 (353)
T ss_dssp ES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTES--------------S-EEE
T ss_pred ccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCcccc--------------CCccc
Confidence 21 1 0 1223678899999998876543 44555554332211000 00000
Q ss_pred EeecccccccccCceeeEEEeeeecccccceeeeeeccceeEEEeecccceecccccccccccchhhhhhcccccEEEEE
Q psy18231 306 SLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEARDSITSVH 385 (540)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~ 385 (540)
.... +.....+ ..-.+.+++..+.... .+ ............+..+.
T Consensus 145 ~~~Y-----------------Pk~G~~n---------p~v~l~v~~~~~~~~~-~~-------~~~~~~~~~~~yl~~v~ 190 (353)
T PF00930_consen 145 SIRY-----------------PKAGDPN---------PRVSLFVVDLASGKTT-EL-------DPPNSLNPQDYYLTRVG 190 (353)
T ss_dssp EEE-------------------BTTS------------EEEEEEEESSSTCCC-EE----------HHHHTSSEEEEEEE
T ss_pred cccc-----------------CCCCCcC---------CceEEEEEECCCCcEE-Ee-------eeccccCCCccCcccce
Confidence 0000 0000000 1111222222221111 00 00112233456677888
Q ss_pred ecC-Ce-eEeeeC--C---CeEEEEeCCCCceEEeee---C---CceEEEEEe-cCC-cEEEeecCCCe--EEEEecccc
Q psy18231 386 VSD-HE-ILTASL--D---CRIRRYDIRTGNLVTDYV---G---EPIVDACFT-RDC-QCILTCSTDEC--LRLFDKATG 448 (540)
Q Consensus 386 ~~~-~~-l~~~~~--d---g~i~iwd~~~~~~~~~~~---~---~~i~~~~~s-p~~-~~l~~~~~dg~--i~i~d~~~~ 448 (540)
|.+ .. ++..-. + ..+.+.|..++....... . ..-....|. +++ .++.....+|. |.+++...+
T Consensus 191 W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~ 270 (353)
T PF00930_consen 191 WSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGG 270 (353)
T ss_dssp EEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSS
T ss_pred ecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcCCCcEEEEEccccc
Confidence 877 22 443322 2 246677887765533332 2 123345554 554 45555556665 555566555
Q ss_pred chhhhhccCcCCcceEEEEecCCCCeEE-EeeCCC----cEEEEEecCCcceeEEEecccceeeeEEEEcCCCcEEEeec
Q psy18231 449 ELLEEYKGHKSGDFRIECCLDSKDSQIF-CGSSDG----KIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC 523 (540)
Q Consensus 449 ~~~~~~~~~~~~v~~~~~~~s~~~~~l~-s~s~dg----~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~ 523 (540)
.. ..+....-.|..+ ..++++++.|+ ++..++ .|+.-++..+..+..+. ...+.-..+.|||++++++-..
T Consensus 271 ~~-~~lT~G~~~V~~i-~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~LT--~~~~~~~~~~~Spdg~y~v~~~ 346 (353)
T PF00930_consen 271 KP-RQLTSGDWEVTSI-LGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEPKCLT--CEDGDHYSASFSPDGKYYVDTY 346 (353)
T ss_dssp EE-EESS-SSS-EEEE-EEEECTSSEEEEEESSGGTTSBEEEEEETTETTEEEESS--TTSSTTEEEEE-TTSSEEEEEE
T ss_pred ce-eccccCceeeccc-ceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCeEecc--CCCCCceEEEECCCCCEEEEEE
Confidence 43 3444344445443 36788877644 454422 45555555244455554 2222226899999999987654
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: |
| >PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=98.43 E-value=0.0006 Score=61.76 Aligned_cols=279 Identities=12% Similarity=0.070 Sum_probs=145.7
Q ss_pred eeeeeccccccee-eeeecCeEEEEeCCCCCEEEEeeC----------CCcEEEEcCCCCeeEEEeecC---Cc----ce
Q psy18231 148 SIRVYRPLTVNRE-LFVLSGLMHTRFPVDGSYCLTCGS----------DKKIKLWNPYRNLLLKTYGGH---AH----EV 209 (540)
Q Consensus 148 ~i~~~~~~~~~~~-~~h~~~v~~v~~spdg~~lat~~~----------dg~i~iwd~~~~~~~~~~~~h---~~----~v 209 (540)
.+.+++..+.+-+ ..-.+-.-.+..|||++.+++++. .-.|.+||..+..+...+.-. +. ..
T Consensus 18 rv~viD~d~~k~lGmi~~g~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~~~~ 97 (342)
T PF06433_consen 18 RVYVIDADSGKLLGMIDTGFLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVVPYK 97 (342)
T ss_dssp EEEEEETTTTEEEEEEEEESSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS--G
T ss_pred eEEEEECCCCcEEEEeecccCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheecccc
Confidence 4666665554322 123445566788999999887532 347999999999887765322 21 22
Q ss_pred eEEEEeeCCCeEEEeeC--CCeEEEEEcCCCceeEeccccCCceeEEEECCCCCEEEEecCCCcEEEEEecCCCCCCcch
Q psy18231 210 NDATAACDSSQIASGAS--DKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQV 287 (540)
Q Consensus 210 ~~l~~sp~~~~l~s~s~--dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 287 (540)
..++++.|+++++.... -..|.|-|+..++.+..+.- .+... +--++ ..-+.+-+.||++.-..+...-.....
T Consensus 98 ~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~-PGC~~-iyP~~-~~~F~~lC~DGsl~~v~Ld~~Gk~~~~- 173 (342)
T PF06433_consen 98 NMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDT-PGCWL-IYPSG-NRGFSMLCGDGSLLTVTLDADGKEAQK- 173 (342)
T ss_dssp GGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEG-TSEEE-EEEEE-TTEEEEEETTSCEEEEEETSTSSEEEE-
T ss_pred cceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecC-CCEEE-EEecC-CCceEEEecCCceEEEEECCCCCEeEe-
Confidence 34678889998877544 45799999999888877642 22111 11122 245778888999999999844321100
Q ss_pred hhhhHhhhhcCCceeEEEEeecccccccccCceeeEEEeeeecccccceeeeeeccceeEEEeecccceecccccccccc
Q psy18231 288 RCLNEALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIH 367 (540)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (540)
...+.......+..... ...........+-.+.+...+..+..... ..+++..
T Consensus 174 ----------------~t~~F~~~~dp~f~~~~----------~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~-~~~~~~~ 226 (342)
T PF06433_consen 174 ----------------STKVFDPDDDPLFEHPA----------YSRDGGRLYFVSYEGNVYSADLSGDSAKF-GKPWSLL 226 (342)
T ss_dssp ----------------EEEESSTTTS-B-S--E----------EETTTTEEEEEBTTSEEEEEEETTSSEEE-EEEEESS
T ss_pred ----------------eccccCCCCcccccccc----------eECCCCeEEEEecCCEEEEEeccCCcccc-cCccccc
Confidence 00000000000000000 00000011122333334443333332111 1111111
Q ss_pred cchhhhhhcccccEEEEEecC--CeeEeeeC---C-------CeEEEEeCCCCceEEeee-CCceEEEEEecCCc-EEEe
Q psy18231 368 NSCFQALKEARDSITSVHVSD--HEILTASL---D-------CRIRRYDIRTGNLVTDYV-GEPIVDACFTRDCQ-CILT 433 (540)
Q Consensus 368 ~~~~~~~~~~~~~v~~l~~~~--~~l~~~~~---d-------g~i~iwd~~~~~~~~~~~-~~~i~~~~~sp~~~-~l~~ 433 (540)
...-+.-....+.-.-+++++ ++|.+--. + ..|.++|+.+++.+.++. .+++.++..+.+.+ +|++
T Consensus 227 t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~~~~~Si~Vsqd~~P~L~~ 306 (342)
T PF06433_consen 227 TDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLEHPIDSIAVSQDDKPLLYA 306 (342)
T ss_dssp -HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEEEEESEEEEESSSS-EEEE
T ss_pred CccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCCCccceEEEccCCCcEEEE
Confidence 100011111223333455554 44443221 1 248888999999999998 46888999998766 5544
Q ss_pred -ecCCCeEEEEeccccchhhhhccC
Q psy18231 434 -CSTDECLRLFDKATGELLEEYKGH 457 (540)
Q Consensus 434 -~~~dg~i~i~d~~~~~~~~~~~~~ 457 (540)
...++.+.+||..+|+.+++++.-
T Consensus 307 ~~~~~~~l~v~D~~tGk~~~~~~~l 331 (342)
T PF06433_consen 307 LSAGDGTLDVYDAATGKLVRSIEQL 331 (342)
T ss_dssp EETTTTEEEEEETTT--EEEEE---
T ss_pred EcCCCCeEEEEeCcCCcEEeehhcc
Confidence 456899999999999988877643
|
4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). |
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=98.39 E-value=5.2e-05 Score=74.09 Aligned_cols=124 Identities=11% Similarity=0.074 Sum_probs=83.9
Q ss_pred CCeEEEEeCCC-----CceEEeee-CCceEEEEEecCCcEEEeecC-CCeEEEEeccccch------------hhhhccC
Q psy18231 397 DCRIRRYDIRT-----GNLVTDYV-GEPIVDACFTRDCQCILTCST-DECLRLFDKATGEL------------LEEYKGH 457 (540)
Q Consensus 397 dg~i~iwd~~~-----~~~~~~~~-~~~i~~~~~sp~~~~l~~~~~-dg~i~i~d~~~~~~------------~~~~~~~ 457 (540)
++.|.+.|..+ .+.+..+. +.....+.++|||+++++++. ++++.|+|+.+.+. +.+...-
T Consensus 295 gn~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevevG 374 (635)
T PRK02888 295 GSKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPELG 374 (635)
T ss_pred CCEEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeeccC
Confidence 57899999998 34555444 578899999999999887665 89999999987653 2222222
Q ss_pred cCCcceEEEEecCCCCeEEEeeCCCcEEEEEecC----------CcceeEEE---ecccceeeeEEEEcCCCcEEEeec
Q psy18231 458 KSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVD----------SSQISTLI---HSVGKAVVNSLCSHPTRKHIMSAC 523 (540)
Q Consensus 458 ~~~v~~~~~~~s~~~~~l~s~s~dg~i~iwd~~~----------~~~~~~~~---~~~~~~~v~~l~~s~d~~~l~s~~ 523 (540)
.++ +..+|.++|....|-.-|..|..||+.+ ...+..+. .++|......=.-.|||++|++..
T Consensus 375 lGP---LHTaFDg~G~aytslf~dsqv~kwn~~~a~~~~~g~~~~~v~~k~dV~y~pgh~~~~~g~t~~~dgk~l~~~n 450 (635)
T PRK02888 375 LGP---LHTAFDGRGNAYTTLFLDSQIVKWNIEAAIRAYKGEKVDPIVQKLDVHYQPGHNHASMGETKEADGKWLVSLN 450 (635)
T ss_pred CCc---ceEEECCCCCEEEeEeecceeEEEehHHHHHHhccccCCcceecccCCCccceeeecCCCcCCCCCCEEEEcc
Confidence 222 2337999998888889999999999876 23333333 123332222223367888888764
|
|
| >KOG1920|consensus | Back alignment and domain information |
|---|
Probab=98.38 E-value=7.1e-05 Score=76.93 Aligned_cols=239 Identities=13% Similarity=0.148 Sum_probs=137.3
Q ss_pred CcceeEEEEeeCCCeEEEeeCCCeEEEEEcCCCceeEeccccCCceeEEEECCCCCEEEEecCCCcEEEEEecCCCCCCc
Q psy18231 206 AHEVNDATAACDSSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPI 285 (540)
Q Consensus 206 ~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 285 (540)
.+.|.++.|.-+.+.++.+..+|.|.+-|.++.... ....-.+.|.+++|+||+..++..+.++++.+-.- +.. ++
T Consensus 68 d~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~e-ivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~-~f~--~i 143 (1265)
T KOG1920|consen 68 DDEIVSVQFLADTNSICVITALGDIILVDPETLELE-IVGNVDNGISAASWSPDEELLALITGRQTLLFMTK-DFE--PI 143 (1265)
T ss_pred CcceEEEEEecccceEEEEecCCcEEEEccccccee-eeeeccCceEEEeecCCCcEEEEEeCCcEEEEEec-ccc--ch
Confidence 368999999999999999999999999988776532 22335778999999999999998888777766432 111 11
Q ss_pred chhhhhHhhhhcCCceeEEEEeecccccccccCceeeEEEeeeecccccceeeeeeccceeEEEeecccceecccccccc
Q psy18231 286 QVRCLNEALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPIS 365 (540)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 365 (540)
..+.+....
T Consensus 144 ~E~~L~~d~----------------------------------------------------------------------- 152 (1265)
T KOG1920|consen 144 AEKPLDADD----------------------------------------------------------------------- 152 (1265)
T ss_pred hcccccccc-----------------------------------------------------------------------
Confidence 100000000
Q ss_pred cccchhhhhhcccccEEEEEecC-CeeEeeeCCCeEEEEeCCCCce-EEe-eeCCceEEEEEecCCcEEEeec-----CC
Q psy18231 366 IHNSCFQALKEARDSITSVHVSD-HEILTASLDCRIRRYDIRTGNL-VTD-YVGEPIVDACFTRDCQCILTCS-----TD 437 (540)
Q Consensus 366 ~~~~~~~~~~~~~~~v~~l~~~~-~~l~~~~~dg~i~iwd~~~~~~-~~~-~~~~~i~~~~~sp~~~~l~~~~-----~d 437 (540)
...+....+-|-. ..-+-|+ .|.....+...... ... -....-++++|--||+++|+.. ..
T Consensus 153 ----------~~~sk~v~VGwGrkeTqfrgs-~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~ 221 (1265)
T KOG1920|consen 153 ----------ERKSKFVNVGWGRKETQFRGS-EGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGT 221 (1265)
T ss_pred ----------ccccccceecccccceeeecc-hhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCc
Confidence 0000000111111 0000000 00000000000000 000 0012345689999999999832 33
Q ss_pred CeEEEEeccccchhhhhccCcCCcceEEEEecCCCCeEEEe---eCCCcEEEEEecCCcceeEEE--ecccceeeeEEEE
Q psy18231 438 ECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCG---SSDGKIYKWQLVDSSQISTLI--HSVGKAVVNSLCS 512 (540)
Q Consensus 438 g~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~s~~~~~l~s~---s~dg~i~iwd~~~~~~~~~~~--~~~~~~~v~~l~~ 512 (540)
..|++||-+ |..-..-....+.-.++ +|-|.|..+++- +.|+.|.++. ++|-....+. .+.....|..++|
T Consensus 222 RkirV~drE-g~Lns~se~~~~l~~~L--sWkPsgs~iA~iq~~~sd~~IvffE-rNGL~hg~f~l~~p~de~~ve~L~W 297 (1265)
T KOG1920|consen 222 RKIRVYDRE-GALNSTSEPVEGLQHSL--SWKPSGSLIAAIQCKTSDSDIVFFE-RNGLRHGEFVLPFPLDEKEVEELAW 297 (1265)
T ss_pred eeEEEeccc-chhhcccCcccccccce--eecCCCCeEeeeeecCCCCcEEEEe-cCCccccccccCCcccccchheeee
Confidence 789999976 54322222222222234 889999998875 3566899998 5554443332 1133344999999
Q ss_pred cCCCcEEEe---ec-CCeeEEEEccc
Q psy18231 513 HPTRKHIMS---AC-GNNVKLWTAEE 534 (540)
Q Consensus 513 s~d~~~l~s---~~-d~~i~iw~~~~ 534 (540)
+.++..|+. .. ...|++|-+.+
T Consensus 298 ns~sdiLAv~~~~~e~~~v~lwt~~N 323 (1265)
T KOG1920|consen 298 NSNSDILAVVTSNLENSLVQLWTTGN 323 (1265)
T ss_pred cCCCCceeeeecccccceEEEEEecC
Confidence 999999988 44 44599998754
|
|
| >KOG1275|consensus | Back alignment and domain information |
|---|
Probab=98.32 E-value=1.3e-05 Score=79.38 Aligned_cols=149 Identities=9% Similarity=0.109 Sum_probs=113.7
Q ss_pred cEEEEEecCCeeEeeeCCCeEEEEeCCCCceEEeeeCCceEEEEEecCCcEEEeecC---------CCeEEEEeccccch
Q psy18231 380 SITSVHVSDHEILTASLDCRIRRYDIRTGNLVTDYVGEPIVDACFTRDCQCILTCST---------DECLRLFDKATGEL 450 (540)
Q Consensus 380 ~v~~l~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~---------dg~i~i~d~~~~~~ 450 (540)
.|.-+..+...+++|...|+|.+-|.++.+.+.++..|.-.-..|+-.|+.|++++. |.-|+|||++..+.
T Consensus 179 ~v~imR~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDfDv~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmra 258 (1118)
T KOG1275|consen 179 GVTIMRYNNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDFDVQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRA 258 (1118)
T ss_pred ceEEEEecCcEEEeecccceEEeecCCcCceeeeeeccccceeeeeccCCeEEEeecccccccccccchhhhhhhhhhhc
Confidence 366677777899999999999999999999999998876666677778999999875 55689999998887
Q ss_pred hhhhccCcCCcceEEEEecCCC-CeEEEeeCCCcEEEEEecC-Ccc-eeEEEecccceeeeEEEEcCCCcEEEeec-CCe
Q psy18231 451 LEEYKGHKSGDFRIECCLDSKD-SQIFCGSSDGKIYKWQLVD-SSQ-ISTLIHSVGKAVVNSLCSHPTRKHIMSAC-GNN 526 (540)
Q Consensus 451 ~~~~~~~~~~v~~~~~~~s~~~-~~l~s~s~dg~i~iwd~~~-~~~-~~~~~~~~~~~~v~~l~~s~d~~~l~s~~-d~~ 526 (540)
+.-+.-+-++ ..+ .|+|.- ..+++++..|...+-|..+ +.+ ...+........+..+++|++++.|+.+. +|.
T Consensus 259 l~PI~~~~~P-~fl--rf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~ 335 (1118)
T KOG1275|consen 259 LSPIQFPYGP-QFL--RFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGH 335 (1118)
T ss_pred cCCcccccCc-hhh--hhcccccceEEEEecccceeeccccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCc
Confidence 7776666555 223 455542 3588888899999998432 222 22222113344599999999999999999 999
Q ss_pred eEEEE
Q psy18231 527 VKLWT 531 (540)
Q Consensus 527 i~iw~ 531 (540)
|.+|.
T Consensus 336 v~~wa 340 (1118)
T KOG1275|consen 336 VNLWA 340 (1118)
T ss_pred Eeeec
Confidence 99998
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.32 E-value=0.00041 Score=66.88 Aligned_cols=222 Identities=12% Similarity=0.085 Sum_probs=109.9
Q ss_pred eecCCcceeEEEEeeCCCeEEEeeCCCeEEEEEcCCCceeEeccccCCceeEEEECCCCCEEEEecCCCcEEEEE-ecCC
Q psy18231 202 YGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWD-VKSR 280 (540)
Q Consensus 202 ~~~h~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd-~~~~ 280 (540)
+....-....+.++|+|++++. +.||.-.|+.....+... .+.-....|.+.+ .+|+-...++|.++. +...
T Consensus 28 lg~~~~~p~~ls~npngr~v~V-~g~geY~iyt~~~~r~k~-----~G~g~~~vw~~~n-~yAv~~~~~~I~I~kn~~~~ 100 (443)
T PF04053_consen 28 LGSCEIYPQSLSHNPNGRFVLV-CGDGEYEIYTALAWRNKA-----FGSGLSFVWSSRN-RYAVLESSSTIKIYKNFKNE 100 (443)
T ss_dssp EEE-SS--SEEEE-TTSSEEEE-EETTEEEEEETTTTEEEE-----EEE-SEEEE-TSS-EEEEE-TTS-EEEEETTEE-
T ss_pred CCCCCcCCeeEEECCCCCEEEE-EcCCEEEEEEccCCcccc-----cCceeEEEEecCc-cEEEEECCCeEEEEEcCccc
Confidence 3334555789999999998888 556778888743333222 2344668888854 466666678899963 2221
Q ss_pred CCCCcchhhhhHhhhhcCCceeEEEEeecccccccccCceeeEEEeeeecccccceeeeeeccceeEEEeecccceeccc
Q psy18231 281 SHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGD 360 (540)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (540)
....+.
T Consensus 101 ~~k~i~-------------------------------------------------------------------------- 106 (443)
T PF04053_consen 101 VVKSIK-------------------------------------------------------------------------- 106 (443)
T ss_dssp TT------------------------------------------------------------------------------
T ss_pred cceEEc--------------------------------------------------------------------------
Confidence 100000
Q ss_pred ccccccccchhhhhhcccccEEEEEecCCeeEeeeCCCeEEEEeCCCCceEEeeeCCceEEEEEecCCcEEEeecCCCeE
Q psy18231 361 VTPISIHNSCFQALKEARDSITSVHVSDHEILTASLDCRIRRYDIRTGNLVTDYVGEPIVDACFTRDCQCILTCSTDECL 440 (540)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i 440 (540)
+ ...+..+-. +.+|...+ ++.|.+||..+++.+.++.-.+|..+.|+++|++++..+.+ .+
T Consensus 107 -------------~---~~~~~~If~-G~LL~~~~-~~~i~~yDw~~~~~i~~i~v~~vk~V~Ws~~g~~val~t~~-~i 167 (443)
T PF04053_consen 107 -------------L---PFSVEKIFG-GNLLGVKS-SDFICFYDWETGKLIRRIDVSAVKYVIWSDDGELVALVTKD-SI 167 (443)
T ss_dssp -----------------SS-EEEEE--SSSEEEEE-TTEEEEE-TTT--EEEEESS-E-EEEEE-TTSSEEEEE-S--SE
T ss_pred -------------C---CcccceEEc-CcEEEEEC-CCCEEEEEhhHcceeeEEecCCCcEEEEECCCCEEEEEeCC-eE
Confidence 0 011222222 34444444 45899999999999999998889999999999999998765 57
Q ss_pred EEEeccccc-----------hhhhhccCcCCcceEEEEecCCCCeEEEeeCCCcEEEEEecCCcceeEEEecccceeeeE
Q psy18231 441 RLFDKATGE-----------LLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNS 509 (540)
Q Consensus 441 ~i~d~~~~~-----------~~~~~~~~~~~v~~~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~ 509 (540)
.|++..... ....+..-...|.+. +|..+ -++++... .++. +-.|+. ..+. .-..++.-
T Consensus 168 ~il~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg--~W~~d-~fiYtT~~--~lkY--l~~Ge~-~~i~--~ld~~~yl 237 (443)
T PF04053_consen 168 YILKYNLEAVAAIPEEGVEDAFELIHEISERIKSG--CWVED-CFIYTTSN--HLKY--LVNGET-GIIA--HLDKPLYL 237 (443)
T ss_dssp EEEEE-HHHHHHBTTTB-GGGEEEEEEE-S--SEE--EEETT-EEEEE-TT--EEEE--EETTEE-EEEE--E-SS--EE
T ss_pred EEEEecchhcccccccCchhceEEEEEecceeEEE--EEEcC-EEEEEcCC--eEEE--EEcCCc-ceEE--EcCCceEE
Confidence 777654321 111111112233333 44443 22222222 4444 222322 2222 12345666
Q ss_pred EEEcCCCcEEEeec-CCeeEEEEcc
Q psy18231 510 LCSHPTRKHIMSAC-GNNVKLWTAE 533 (540)
Q Consensus 510 l~~s~d~~~l~s~~-d~~i~iw~~~ 533 (540)
+...|+.+.+.... |+.|..+.++
T Consensus 238 lgy~~~~~~ly~~Dr~~~v~~~~ld 262 (443)
T PF04053_consen 238 LGYLPKENRLYLIDRDGNVISYELD 262 (443)
T ss_dssp EEEETTTTEEEEE-TT--EEEEE--
T ss_pred EEEEccCCEEEEEECCCCEEEEEEC
Confidence 67777777888888 8888877765
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >KOG1920|consensus | Back alignment and domain information |
|---|
Probab=98.28 E-value=0.00043 Score=71.48 Aligned_cols=238 Identities=13% Similarity=0.119 Sum_probs=134.9
Q ss_pred cCeEEEEeCCCCCEEEEeeCCCcEEEEcCCCCeeEEEeecCCcceeEEEEeeCCCeEEEeeCCCeEEEEEcCCCceeEec
Q psy18231 165 SGLMHTRFPVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPVRRW 244 (540)
Q Consensus 165 ~~v~~v~~spdg~~lat~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~ 244 (540)
+.|.++.|.-++.-++.+..+|.|.+-|.++.... ....-...|.+++||||++.++..+..+++.+-+ .+-.++..-
T Consensus 69 ~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~e-ivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT-~~f~~i~E~ 146 (1265)
T KOG1920|consen 69 DEIVSVQFLADTNSICVITALGDIILVDPETLELE-IVGNVDNGISAASWSPDEELLALITGRQTLLFMT-KDFEPIAEK 146 (1265)
T ss_pred cceEEEEEecccceEEEEecCCcEEEEccccccee-eeeeccCceEEEeecCCCcEEEEEeCCcEEEEEe-ccccchhcc
Confidence 67999999999999999999999999998776432 2233467899999999999999998888776643 233332221
Q ss_pred cccCCceeEEEECCCCCEEEEecCCCcEEEEEecCCCCCCcchhhhhHhhhhcCCceeEEEEeecccccccccCceeeEE
Q psy18231 245 REHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHLSNGLLTKLV 324 (540)
Q Consensus 245 ~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (540)
.-+. .-.+.+ ..+.+|..+.=.-+.-..++....+....
T Consensus 147 ~L~~------d~~~~s-k~v~VGwGrkeTqfrgs~gr~~~~~~~~~---------------------------------- 185 (1265)
T KOG1920|consen 147 PLDA------DDERKS-KFVNVGWGRKETQFRGSEGRQAARQKIEK---------------------------------- 185 (1265)
T ss_pred cccc------cccccc-ccceecccccceeeecchhhhcccccccc----------------------------------
Confidence 1110 111111 23333332211111111111100000000
Q ss_pred EeeeecccccceeeeeeccceeEEEeecccceecccccccccccchhhhhhcccccEEEEEecC--CeeEeee----CC-
Q psy18231 325 FAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEARDSITSVHVSD--HEILTAS----LD- 397 (540)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~--~~l~~~~----~d- 397 (540)
.+..... ...+.=++|.|-. .++++.. .+
T Consensus 186 -------------------------------------------ek~~~~~-~~~~~~~~IsWRgDg~~fAVs~~~~~~~~ 221 (1265)
T KOG1920|consen 186 -------------------------------------------EKALEQI-EQDDHKTSISWRGDGEYFAVSFVESETGT 221 (1265)
T ss_pred -------------------------------------------cccccch-hhccCCceEEEccCCcEEEEEEEeccCCc
Confidence 0000000 0111223566655 5666522 23
Q ss_pred CeEEEEeCCCCceEEeee--CCceEEEEEecCCcEEEeec---CCCeEEEEecc---ccchhhhhccCcCCcceEEEEec
Q psy18231 398 CRIRRYDIRTGNLVTDYV--GEPIVDACFTRDCQCILTCS---TDECLRLFDKA---TGELLEEYKGHKSGDFRIECCLD 469 (540)
Q Consensus 398 g~i~iwd~~~~~~~~~~~--~~~i~~~~~sp~~~~l~~~~---~dg~i~i~d~~---~~~~~~~~~~~~~~v~~~~~~~s 469 (540)
..|++||-+ |.+-..-. ...-.+++|-|.|.++++-. .|+.|.+|.-. .++....+.....++..+ +|+
T Consensus 222 RkirV~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de~~ve~L--~Wn 298 (1265)
T KOG1920|consen 222 RKIRVYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDEKEVEEL--AWN 298 (1265)
T ss_pred eeEEEeccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCccccccccCCcccccchhee--eec
Confidence 789999987 43322211 23456899999999988753 45678888732 222222333333335555 899
Q ss_pred CCCCeEEE---eeCCCcEEEEEecCC
Q psy18231 470 SKDSQIFC---GSSDGKIYKWQLVDS 492 (540)
Q Consensus 470 ~~~~~l~s---~s~dg~i~iwd~~~~ 492 (540)
.++..||+ ......|++|-+.+.
T Consensus 299 s~sdiLAv~~~~~e~~~v~lwt~~Ny 324 (1265)
T KOG1920|consen 299 SNSDILAVVTSNLENSLVQLWTTGNY 324 (1265)
T ss_pred CCCCceeeeecccccceEEEEEecCe
Confidence 99999887 455556999987664
|
|
| >KOG2114|consensus | Back alignment and domain information |
|---|
Probab=98.27 E-value=7.4e-05 Score=73.97 Aligned_cols=202 Identities=12% Similarity=0.174 Sum_probs=130.2
Q ss_pred EeCCCCCEEEEeeCCCcEEEEcCCCCeeEEEeecCCcc-eeEEEEeeCCCeEEEeeCCC-----eEEEEEcCCC------
Q psy18231 171 RFPVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHE-VNDATAACDSSQIASGASDK-----SVILWEVTTG------ 238 (540)
Q Consensus 171 ~~spdg~~lat~~~dg~i~iwd~~~~~~~~~~~~h~~~-v~~l~~sp~~~~l~s~s~dg-----~i~iwd~~~~------ 238 (540)
+|++.+..++.|+.+|.|.+.+ ..-+.+..++.+... |..+-...+.++|++.+.|+ .++||+++.-
T Consensus 30 c~~s~~~~vvigt~~G~V~~Ln-~s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP 108 (933)
T KOG2114|consen 30 CCSSSTGSVVIGTADGRVVILN-SSFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSP 108 (933)
T ss_pred EEcCCCceEEEeeccccEEEec-ccceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCCc
Confidence 4678888999999999998888 345555778877777 55554444446888887775 4899999643
Q ss_pred ceeE--eccc-----cCCceeEEEECCCCCEEEEecCCCcEEEEEecCCCCCCcchhhhhHhhhhcCCceeEEEEeeccc
Q psy18231 239 QPVR--RWRE-----HASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKST 311 (540)
Q Consensus 239 ~~~~--~~~~-----h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (540)
.++. .+.. ...++.+++.+.+-+.++.|-.+|.|..+.-+-...+-.
T Consensus 109 ~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgs-------------------------- 162 (933)
T KOG2114|consen 109 QCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGS-------------------------- 162 (933)
T ss_pred ceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhcccc--------------------------
Confidence 2221 1112 256788999999989999999999998875321110000
Q ss_pred ccccccCceeeEEEeeeecccccceeeeeeccceeEEEeecccceecccccccccccchhhhhhcccccEEEEEecC--C
Q psy18231 312 KNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEARDSITSVHVSD--H 389 (540)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~--~ 389 (540)
..........+|+.+++.. .
T Consensus 163 ----------------------------------------------------------r~~~~~~~~~pITgL~~~~d~~ 184 (933)
T KOG2114|consen 163 ----------------------------------------------------------RQDYSHRGKEPITGLALRSDGK 184 (933)
T ss_pred ----------------------------------------------------------ceeeeccCCCCceeeEEecCCc
Confidence 0001223457888988865 3
Q ss_pred e-eEeeeCCCeEEEEeCCCCceEEe-e--eCCceEEEEEecCCcEEEeecCCCeEEEEeccccchhhhhc-cCcC
Q psy18231 390 E-ILTASLDCRIRRYDIRTGNLVTD-Y--VGEPIVDACFTRDCQCILTCSTDECLRLFDKATGELLEEYK-GHKS 459 (540)
Q Consensus 390 ~-l~~~~~dg~i~iwd~~~~~~~~~-~--~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~ 459 (540)
. +++++ -..|.+|.+....+... + +|-+..|..+++....+++++. ..+.+||.....+-..|. +|..
T Consensus 185 s~lFv~T-t~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~~-e~l~fY~sd~~~~cfaf~~g~kk 257 (933)
T KOG2114|consen 185 SVLFVAT-TEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAGS-EFLYFYDSDGRGPCFAFEVGEKK 257 (933)
T ss_pred eeEEEEe-cceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEecC-ceEEEEcCCCcceeeeecCCCeE
Confidence 3 33333 34688898884442222 3 3457888888876664555544 469999987655555555 5543
|
|
| >PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals | Back alignment and domain information |
|---|
Probab=98.25 E-value=0.0002 Score=67.99 Aligned_cols=242 Identities=14% Similarity=0.191 Sum_probs=129.7
Q ss_pred ceeEEEEeeCCCeEEEeeCCCeEEEEEcCCCce-------------------------------------------eEec
Q psy18231 208 EVNDATAACDSSQIASGASDKSVILWEVTTGQP-------------------------------------------VRRW 244 (540)
Q Consensus 208 ~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~-------------------------------------------~~~~ 244 (540)
.|+.+.|+++..-|+.+...|.|.||.+...+. ...+
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~ 82 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL 82 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence 578899999988999999999999987643211 1111
Q ss_pred cccCCceeEEEECCCCCEEEEecCCCcEEEEEecCCCCCCcchhhhhHhhhhcCCceeEEEEeecccccccccCceeeEE
Q psy18231 245 REHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHLSNGLLTKLV 324 (540)
Q Consensus 245 ~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (540)
+...++|++++.+ |=-+++.|.++|.+.|.|++.... +....+.+
T Consensus 83 ~~~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPav--I~~~~i~~-------------------------------- 127 (395)
T PF08596_consen 83 DAKQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAV--IYNENIRE-------------------------------- 127 (395)
T ss_dssp ---S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEE--EEEEEGGG--------------------------------
T ss_pred eccCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeE--Eeeccccc--------------------------------
Confidence 2246789999987 445899999999999999976541 11000000
Q ss_pred EeeeecccccceeeeeeccceeEEEeecccceecccccccccccchhhhhhcccccEEEEEecC----------CeeEee
Q psy18231 325 FAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEARDSITSVHVSD----------HEILTA 394 (540)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~----------~~l~~~ 394 (540)
..........++++.|.- -.+++|
T Consensus 128 ----------------------------------------------~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vG 161 (395)
T PF08596_consen 128 ----------------------------------------------SFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVG 161 (395)
T ss_dssp ------------------------------------------------T-SS----EEEEEEEEEE-TTSSSEEEEEEEE
T ss_pred ----------------------------------------------cccccccccCeeEEEEEEEecCCCcccceEEEEE
Confidence 000111223444454431 358888
Q ss_pred eCCCeEEEEeCCC---CceE----Ee--eeCCceEEEE-EecCC--------------------cEEEeecCCCeEEEEe
Q psy18231 395 SLDCRIRRYDIRT---GNLV----TD--YVGEPIVDAC-FTRDC--------------------QCILTCSTDECLRLFD 444 (540)
Q Consensus 395 ~~dg~i~iwd~~~---~~~~----~~--~~~~~i~~~~-~sp~~--------------------~~l~~~~~dg~i~i~d 444 (540)
+..|.+.+|.+.- +... .. ....+|..+. ++.+. +-+++...+..++++.
T Consensus 162 Tn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv~~ 241 (395)
T PF08596_consen 162 TNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRVFK 241 (395)
T ss_dssp ETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEEE-
T ss_pred eCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEEEe
Confidence 8899999997651 1111 11 1123444433 32210 1233444567799999
Q ss_pred ccccchhhhhccCcCCcceEEEEe-----cCCCCeEEEeeCCCcEEEEEecCCcceeEEEec--ccceeeeEEEEcCCCc
Q psy18231 445 KATGELLEEYKGHKSGDFRIECCL-----DSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHS--VGKAVVNSLCSHPTRK 517 (540)
Q Consensus 445 ~~~~~~~~~~~~~~~~v~~~~~~~-----s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~--~~~~~v~~l~~s~d~~ 517 (540)
..+.+..+... .....+-.+++ ...+..|++-..+|.|++|.+..-+.+..+... .+...+....++++|.
T Consensus 242 ~~~~k~~~K~~--~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~ssis~~Gd 319 (395)
T PF08596_consen 242 PPKSKGAHKSF--DDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPLDSRRLSSSSISRNGD 319 (395)
T ss_dssp TT---EEEEE---SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS---HHHHTT-EE-TTS-
T ss_pred CCCCcccceee--ccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCccccccccccEECCCCC
Confidence 88776554333 22222222234 234556888899999999999999888887731 1234466778899999
Q ss_pred EEEeecCCeeEEEEc
Q psy18231 518 HIMSACGNNVKLWTA 532 (540)
Q Consensus 518 ~l~s~~d~~i~iw~~ 532 (540)
.++-.+...+.++.+
T Consensus 320 i~~~~gpsE~~l~sv 334 (395)
T PF08596_consen 320 IFYWTGPSEIQLFSV 334 (395)
T ss_dssp EEEE-SSSEEEEEEE
T ss_pred EEEEeCcccEEEEEE
Confidence 888887555555544
|
The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A. |
| >TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family | Back alignment and domain information |
|---|
Probab=98.24 E-value=0.0016 Score=65.03 Aligned_cols=104 Identities=15% Similarity=0.141 Sum_probs=65.9
Q ss_pred CCEEEEeeCCCcEEEEcCCCCeeEEEeecCC-ccee----------EEEEeeCCCeEEEeeCCCeEEEEEcCCCceeEec
Q psy18231 176 GSYCLTCGSDKKIKLWNPYRNLLLKTYGGHA-HEVN----------DATAACDSSQIASGASDKSVILWEVTTGQPVRRW 244 (540)
Q Consensus 176 g~~lat~~~dg~i~iwd~~~~~~~~~~~~h~-~~v~----------~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~ 244 (540)
+..|++++.++.|.-.|..+|+.+.++.... ..+. .+++ .+..++.++.|+.+.-.|.++|+.+...
T Consensus 69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av--~~~~v~v~t~dg~l~ALDa~TGk~~W~~ 146 (527)
T TIGR03075 69 DGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVAL--YDGKVFFGTLDARLVALDAKTGKVVWSK 146 (527)
T ss_pred CCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceE--ECCEEEEEcCCCEEEEEECCCCCEEeec
Confidence 4467777778899999999999888765311 1111 1222 2346777888999999999999998765
Q ss_pred cccCCc-eeEEEECC---CCCEEEEec------CCCcEEEEEecCCCC
Q psy18231 245 REHASK-VTCVKFNE---DSSVVISGS------QDNTVMMWDVKSRSH 282 (540)
Q Consensus 245 ~~h~~~-v~~~~~~~---~~~~l~s~~------~dg~i~iwd~~~~~~ 282 (540)
...... -..+.-+| ++ .++.+. .+|.|.-+|.++++.
T Consensus 147 ~~~~~~~~~~~tssP~v~~g-~Vivg~~~~~~~~~G~v~AlD~~TG~~ 193 (527)
T TIGR03075 147 KNGDYKAGYTITAAPLVVKG-KVITGISGGEFGVRGYVTAYDAKTGKL 193 (527)
T ss_pred ccccccccccccCCcEEECC-EEEEeecccccCCCcEEEEEECCCCce
Confidence 421100 01111122 34 445443 268899999999873
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens. |
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=98.22 E-value=0.00032 Score=68.73 Aligned_cols=102 Identities=5% Similarity=-0.015 Sum_probs=71.7
Q ss_pred ecCCcEEEeecCCCeEEEEeccc-----cchhhhhccCcCCcceEEEEecCCCCeEEEe-eCCCcEEEEEecCCcc----
Q psy18231 425 TRDCQCILTCSTDECLRLFDKAT-----GELLEEYKGHKSGDFRIECCLDSKDSQIFCG-SSDGKIYKWQLVDSSQ---- 494 (540)
Q Consensus 425 sp~~~~l~~~~~dg~i~i~d~~~-----~~~~~~~~~~~~~v~~~~~~~s~~~~~l~s~-s~dg~i~iwd~~~~~~---- 494 (540)
.++|++...+ ++.|.+.|..+ .+.+..+..... ...+ .++|||++++++ ..+.+|.|.|+.+.+.
T Consensus 285 vkdGK~~~V~--gn~V~VID~~t~~~~~~~v~~yIPVGKs-PHGV--~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~ 359 (635)
T PRK02888 285 VKAGKFKTIG--GSKVPVVDGRKAANAGSALTRYVPVPKN-PHGV--NTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDG 359 (635)
T ss_pred hhCCCEEEEC--CCEEEEEECCccccCCcceEEEEECCCC-ccce--EECCCCCEEEEeCCCCCcEEEEEChhhhhhhhc
Confidence 4577776663 67899999988 344444443332 3445 799999996655 4689999999987553
Q ss_pred --------eeEEEecccceeeeEEEEcCCCcEEEeec-CCeeEEEEccc
Q psy18231 495 --------ISTLIHSVGKAVVNSLCSHPTRKHIMSAC-GNNVKLWTAEE 534 (540)
Q Consensus 495 --------~~~~~~~~~~~~v~~l~~s~d~~~l~s~~-d~~i~iw~~~~ 534 (540)
+.+.. . .......+|.++|....|-- |..|..|+++.
T Consensus 360 ~~~~~~~vvaeve--v-GlGPLHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 360 KIKPRDAVVAEPE--L-GLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred cCCccceEEEeec--c-CCCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence 33333 2 23355678999998777777 99999999876
|
|
| >KOG2066|consensus | Back alignment and domain information |
|---|
Probab=98.20 E-value=8.1e-06 Score=79.83 Aligned_cols=144 Identities=16% Similarity=0.146 Sum_probs=107.8
Q ss_pred cccEEEEEecCCeeEeeeCCCeEEEEeCCCCceEEeeeCCceEEEEEecCCcEEEeecCCCeEEEEeccccchhhhhccC
Q psy18231 378 RDSITSVHVSDHEILTASLDCRIRRYDIRTGNLVTDYVGEPIVDACFTRDCQCILTCSTDECLRLFDKATGELLEEYKGH 457 (540)
Q Consensus 378 ~~~v~~l~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~ 457 (540)
.+.++|.+++...++.|+-+|.+++++..... ...+...+. ..+|.++++++.||+|.|..+-+.+...++.-+
T Consensus 39 ~D~is~~av~~~~~~~GtH~g~v~~~~~~~~~-~~~~~~s~~-----~~~Gey~asCS~DGkv~I~sl~~~~~~~~~df~ 112 (846)
T KOG2066|consen 39 NDAISCCAVHDKFFALGTHRGAVYLTTCQGNP-KTNFDHSSS-----ILEGEYVASCSDDGKVVIGSLFTDDEITQYDFK 112 (846)
T ss_pred hhHHHHHHhhcceeeeccccceEEEEecCCcc-ccccccccc-----ccCCceEEEecCCCcEEEeeccCCccceeEecC
Confidence 46678888899999999999999999987432 222222221 568999999999999999999888877766544
Q ss_pred cCCcceEEEEecCC-----CCeEEEeeCCCcEEEEEecCC-ccee-EEEecccceeeeEEEEcCCCcEEEeecCCeeEEE
Q psy18231 458 KSGDFRIECCLDSK-----DSQIFCGSSDGKIYKWQLVDS-SQIS-TLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLW 530 (540)
Q Consensus 458 ~~~v~~~~~~~s~~-----~~~l~s~s~dg~i~iwd~~~~-~~~~-~~~~~~~~~~v~~l~~s~d~~~l~s~~d~~i~iw 530 (540)
. ++.++ +++|+ .+.+++|+.-| +.++.-.-- .... .+. ...++|.++.|. |.++|.++|-.|++|
T Consensus 113 r-piksi--al~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~--~~eG~I~~i~W~--g~lIAWand~Gv~vy 184 (846)
T KOG2066|consen 113 R-PIKSI--ALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLS--EGEGPIHSIKWR--GNLIAWANDDGVKVY 184 (846)
T ss_pred C-cceeE--EeccchhhhhhhheeecCcce-EEEehhhhhcCccceeee--cCccceEEEEec--CcEEEEecCCCcEEE
Confidence 3 45666 78887 45799999988 777763221 1111 233 567899999997 889999997789999
Q ss_pred Ecccc
Q psy18231 531 TAEED 535 (540)
Q Consensus 531 ~~~~~ 535 (540)
|+..+
T Consensus 185 d~~~~ 189 (846)
T KOG2066|consen 185 DTPTR 189 (846)
T ss_pred ecccc
Confidence 98765
|
|
| >PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals | Back alignment and domain information |
|---|
Probab=98.20 E-value=0.00075 Score=64.23 Aligned_cols=158 Identities=12% Similarity=0.137 Sum_probs=92.6
Q ss_pred hhcccccEEEEEecC-CeeEeeeCCCeEEEEeCCCCceEEeee----------CCceEEEEEec-----CC---cEEEee
Q psy18231 374 LKEARDSITSVHVSD-HEILTASLDCRIRRYDIRTGNLVTDYV----------GEPIVDACFTR-----DC---QCILTC 434 (540)
Q Consensus 374 ~~~~~~~v~~l~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~----------~~~i~~~~~sp-----~~---~~l~~~ 434 (540)
+....++|++++.+. .++++|..+|.+.|.|++....+..-. ...++++.|+. |+ -.+++|
T Consensus 82 ~~~~~g~vtal~~S~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vG 161 (395)
T PF08596_consen 82 LDAKQGPVTALKNSDIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVG 161 (395)
T ss_dssp E---S-SEEEEEE-BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEE
T ss_pred eeccCCcEeEEecCCCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEE
Confidence 334479999999999 999999999999999999888776532 13588888874 33 568899
Q ss_pred cCCCeEEEEeccc---cch----hhhhccCcCCcceEEEEecCC-C-------------------CeEEEeeCCCcEEEE
Q psy18231 435 STDECLRLFDKAT---GEL----LEEYKGHKSGDFRIECCLDSK-D-------------------SQIFCGSSDGKIYKW 487 (540)
Q Consensus 435 ~~dg~i~i~d~~~---~~~----~~~~~~~~~~v~~~~~~~s~~-~-------------------~~l~s~s~dg~i~iw 487 (540)
+..|.+.+|.+.- +.. ......+.+++..+. .++.+ | .-++....+..++++
T Consensus 162 Tn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~-~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv~ 240 (395)
T PF08596_consen 162 TNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSII-PINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRVF 240 (395)
T ss_dssp ETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEE-EEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEEE
T ss_pred eCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEE-EEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEEE
Confidence 9999999998742 111 111123445555553 23211 1 123334446789999
Q ss_pred EecCCcceeEEEecccceeeeEEEEc-----CCCcEEEeec-CCeeEEEEccc
Q psy18231 488 QLVDSSQISTLIHSVGKAVVNSLCSH-----PTRKHIMSAC-GNNVKLWTAEE 534 (540)
Q Consensus 488 d~~~~~~~~~~~~~~~~~~v~~l~~s-----~d~~~l~s~~-d~~i~iw~~~~ 534 (540)
...+.+...... ........+.+- ..+..|++-. +|.|+++.++.
T Consensus 241 ~~~~~k~~~K~~--~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~ 291 (395)
T PF08596_consen 241 KPPKSKGAHKSF--DDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPS 291 (395)
T ss_dssp -TT---EEEEE---SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT
T ss_pred eCCCCcccceee--ccccccceEEEEeecccCCceEEEEEECCCcEEEEECCC
Confidence 988877655554 232334444452 3456677666 99999999864
|
The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A. |
| >PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats | Back alignment and domain information |
|---|
Probab=98.20 E-value=3.8e-05 Score=73.10 Aligned_cols=75 Identities=11% Similarity=0.068 Sum_probs=64.1
Q ss_pred eeeecCeEEEEeCCCCCEEEEeeCCCcEEEEcCCCCeeEEEeecCCcceeEEEEeeCCCeEEEeeCCCeEEEEEcCC
Q psy18231 161 LFVLSGLMHTRFPVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTT 237 (540)
Q Consensus 161 ~~h~~~v~~v~~spdg~~lat~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~ 237 (540)
+.+...|.|++++|+.+.|+.|+.||+|.+||..++... +....-..+.++|+|+|..+++|+..|.+.+||+.-
T Consensus 256 ipL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~--~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~AL 330 (545)
T PF11768_consen 256 IPLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTL--LAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMAL 330 (545)
T ss_pred EecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeee--eeeecccceEEEEcCCCcEEEEEcCCceEEEEEeec
Confidence 347789999999999999999999999999998766433 333456678999999999999999999999999853
|
|
| >TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=98.16 E-value=1e-06 Score=81.69 Aligned_cols=69 Identities=9% Similarity=0.042 Sum_probs=54.1
Q ss_pred cceecCCceEEeccCCCCCHHHHHHHHHcCC-CEEEeeeeecccccccchhhccccccCCCCCCEEEEEec--CChhHHH
Q psy18231 10 RSTLLKNLKHCDSTLWTSKLNFRQLVRSHNV-DLCFTPMIIADSFIKSSKARNNEFSTSPEDTPLVVQFAS--NNHDDFV 86 (540)
Q Consensus 10 ~~~~~~~~~~~ap~~~~~~~~~r~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~--~~~~~~~ 86 (540)
..+.++.++++|||+++||.+||.+|+++|+ ++ +++..+.+.. +...|+..|+++ .+++. +
T Consensus 39 ~~~~l~~PivlAPMagVtd~~fr~~~~~~Galgv-----vsaegl~~~~----------~~~~~~~~QI~g~~~~~~~-a 102 (369)
T TIGR01304 39 DAYRFELPFIAHPMDALVSPEFAIELGELGGLGV-----LNLEGLWGRH----------EDPDPAIAKIAEAYEEGDQ-A 102 (369)
T ss_pred cceecCCceeecCCCcccCHHHHHHHHHcCCccc-----ccchHHHhcC----------CCHHHHHHHHhhcCCChHH-H
Confidence 3566788999999999999999999999998 76 7777766532 333566799999 45555 8
Q ss_pred HHHHHhcC
Q psy18231 87 RATQYVAP 94 (540)
Q Consensus 87 ~~~~~~~~ 94 (540)
++++.+.+
T Consensus 103 ~aa~~~~e 110 (369)
T TIGR01304 103 AATRLLQE 110 (369)
T ss_pred HHHHHHHH
Confidence 88888766
|
This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302. |
| >KOG1897|consensus | Back alignment and domain information |
|---|
Probab=98.12 E-value=0.0039 Score=63.35 Aligned_cols=344 Identities=8% Similarity=0.016 Sum_probs=173.4
Q ss_pred ecCeEEEEeCCCCCEEEEeeCCCcEEEEcCCCCeeEEEe--ecCCcceeEEEEeeC--C----CeEEEeeCCCeEEEEEc
Q psy18231 164 LSGLMHTRFPVDGSYCLTCGSDKKIKLWNPYRNLLLKTY--GGHAHEVNDATAACD--S----SQIASGASDKSVILWEV 235 (540)
Q Consensus 164 ~~~v~~v~~spdg~~lat~~~dg~i~iwd~~~~~~~~~~--~~h~~~v~~l~~sp~--~----~~l~s~s~dg~i~iwd~ 235 (540)
.+.++..+-+.+...++.++.++.+...++..+. +... +.....|.|+.++|- + ++++.|..+..+.+--.
T Consensus 487 p~~~ti~~~~~n~sqVvvA~~~~~l~y~~i~~~~-l~e~~~~~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~ 565 (1096)
T KOG1897|consen 487 PGKITIGVVSANASQVVVAGGGLALFYLEIEDGG-LREVSHKEFEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTF 565 (1096)
T ss_pred CCceEEEEEeecceEEEEecCccEEEEEEeeccc-eeeeeeheecceeEEEecccCCCCCCcceEEEEEeecceEEEEEE
Confidence 3445555555555566666666777666666554 2222 224678999999983 2 26888888776655433
Q ss_pred C-CCceeEec--c--ccCCceeEEEECCCCCEEEEecCCCcEEEEEecCCCCCCcchhhhhHhhhhcCCceeEEEEeecc
Q psy18231 236 T-TGQPVRRW--R--EHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKS 310 (540)
Q Consensus 236 ~-~~~~~~~~--~--~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (540)
. +...+... . .-...|.-..|-.|..+|.++..||.+.-+-+....-..... ........+.....+...
T Consensus 566 ~pd~~~~~~~~l~~~~iPRSIl~~~~e~d~~yLlvalgdG~l~~fv~d~~tg~lsd~-----Kk~~lGt~P~~Lr~f~sk 640 (1096)
T KOG1897|consen 566 LPDLILITHEQLSGEIIPRSILLTTFEGDIHYLLVALGDGALLYFVLDINTGQLSDR-----KKVTLGTQPISLRTFSSK 640 (1096)
T ss_pred CCCcceeeeeccCCCccchheeeEEeeccceEEEEEcCCceEEEEEEEcccceEccc-----cccccCCCCcEEEEEeeC
Confidence 2 33222211 1 112334555565568899999999998877665433100000 000011111112221111
Q ss_pred c-ccccccCceeeEEEeeeec----------------cc-ccceeeeeeccceeEEEeecccceecccccccccccchhh
Q psy18231 311 T-KNHLSNGLLTKLVFAFRCK----------------YL-NGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQ 372 (540)
Q Consensus 311 ~-~~~~~~~~~~~~~~~~~~~----------------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (540)
. ...+..+.....++..+.+ .. +..........++.+.+... ..+..-. .+
T Consensus 641 ~~t~vfa~sdrP~viY~~n~kLv~spls~kev~~~c~f~s~a~~d~l~~~~~~~l~i~ti---------d~iqkl~--ir 709 (1096)
T KOG1897|consen 641 SRTAVFALSDRPTVIYSSNGKLVYSPLSLKEVNHMCPFNSDAYPDSLASANGGALTIGTI---------DEIQKLH--IR 709 (1096)
T ss_pred CceEEEEeCCCCEEEEecCCcEEEeccchHHhhhhcccccccCCceEEEecCCceEEEEe---------cchhhcc--ee
Confidence 1 1111222222222222111 11 11122222223333332222 1111000 00
Q ss_pred hhhcccccEEEEEecC-C-eeEeee-----------CC---CeEEEEeCCCCceEEeeeC------CceEEEEEecC-Cc
Q psy18231 373 ALKEARDSITSVHVSD-H-EILTAS-----------LD---CRIRRYDIRTGNLVTDYVG------EPIVDACFTRD-CQ 429 (540)
Q Consensus 373 ~~~~~~~~v~~l~~~~-~-~l~~~~-----------~d---g~i~iwd~~~~~~~~~~~~------~~i~~~~~sp~-~~ 429 (540)
+ -.-......+++.+ . .+.+.+ .. ..++++|-++.+.+...+- -.+.++.|..| +.
T Consensus 710 t-vpl~~~prrI~~q~~sl~~~v~s~r~e~~~~~~~ee~~~s~l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t 788 (1096)
T KOG1897|consen 710 T-VPLGESPRRICYQESSLTFGVLSNRIESSAEYYGEEYEVSFLRVLDQNTFEVLSSHEFERNETALSIISCKFTDDPNT 788 (1096)
T ss_pred e-ecCCCChhheEecccceEEEEEecccccchhhcCCcceEEEEEEecCCceeEEeeccccccceeeeeeeeeecCCCce
Confidence 1 01112222333333 1 111111 11 2477888777766544432 24666678887 77
Q ss_pred EEEeecC----------CCeEEEEeccccchhhhhccCc--CCcceEEEEecCCCCeEEEeeCCCcEEEEEecCCcceeE
Q psy18231 430 CILTCST----------DECLRLFDKATGELLEEYKGHK--SGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQIST 497 (540)
Q Consensus 430 ~l~~~~~----------dg~i~i~d~~~~~~~~~~~~~~--~~v~~~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~ 497 (540)
++++|+. .|.|.+|.+..++.+.....+. +.+..+. . -+|++||.- ...|++|+..+.+.++.
T Consensus 789 ~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~Gav~aL~-~--fngkllA~I--n~~vrLye~t~~~eLr~ 863 (1096)
T KOG1897|consen 789 YYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKGAVYALV-E--FNGKLLAGI--NQSVRLYEWTTERELRI 863 (1096)
T ss_pred EEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeeccceeehh-h--hCCeEEEec--CcEEEEEEccccceehh
Confidence 7887762 5788888887744444433332 2333331 1 356666654 45799999988866666
Q ss_pred EEecccceeeeEEEEcCCCcEEEeec-CCeeEEEEc
Q psy18231 498 LIHSVGKAVVNSLCSHPTRKHIMSAC-GNNVKLWTA 532 (540)
Q Consensus 498 ~~~~~~~~~v~~l~~s~d~~~l~s~~-d~~i~iw~~ 532 (540)
-. .+..++..+...-.|..++.|+ -+++.+-..
T Consensus 864 e~--~~~~~~~aL~l~v~gdeI~VgDlm~Sitll~y 897 (1096)
T KOG1897|consen 864 EC--NISNPIIALDLQVKGDEIAVGDLMRSITLLQY 897 (1096)
T ss_pred hh--cccCCeEEEEEEecCcEEEEeeccceEEEEEE
Confidence 55 6778888888888899999998 666655443
|
|
| >cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain | Back alignment and domain information |
|---|
Probab=98.10 E-value=7.8e-06 Score=75.49 Aligned_cols=106 Identities=20% Similarity=0.223 Sum_probs=79.2
Q ss_pred ceecCCceEEeccCCC--CCHHHHHHHHHcCCCEEEeeeeecccccccchhh----------------------ccccc-
Q psy18231 11 STLLKNLKHCDSTLWT--SKLNFRQLVRSHNVDLCFTPMIIADSFIKSSKAR----------------------NNEFS- 65 (540)
Q Consensus 11 ~~~~~~~~~~ap~~~~--~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------~~~~~- 65 (540)
++.+++++++| +|. +..++|++++..|++.+++++++......+.+.+ ...+.
T Consensus 6 G~~~~nP~~~a--ag~~~~~~~~~~~~~~g~~g~v~~~ti~~~~~~~~~~p~~~~~~~~~~n~~g~~~~g~~~~~~~~~~ 83 (296)
T cd04740 6 GLRLKNPVILA--SGTFGFGEELSRVADLGKLGAIVTKSITLEPREGNPPPRVVETPGGMLNAIGLQNPGVEAFLEELLP 83 (296)
T ss_pred CEEcCCCCEEC--CCCCCCHHHHHHHHhcCCceEEEECCcCCCCCCCCCCCeEEecCcceeeecCCCCcCHHHHHHHHHH
Confidence 57789999998 665 8899999998888999999999987654222111 00110
Q ss_pred -cCCCCCCEEEEEecCChhHHHHHHHHhcC-CCCeEeeccCCCceEEEeccccceeccc
Q psy18231 66 -TSPEDTPLVVQFASNNHDDFVRATQYVAP-HCNGVDLNCGCPQRWAIKEGYGCALLSK 122 (540)
Q Consensus 66 -~~~~~~~~~~q~~~~~~~~~~~~~~~~~~-~~~~id~~~gc~~~~~~~~g~g~~l~~~ 122 (540)
..+.+.|+++|+.++++++++++++.+.+ +.|.|++|++||... +.|..++.+
T Consensus 84 ~~~~~~~p~ivsi~g~~~~~~~~~a~~~~~~G~d~iElN~~cP~~~----~~g~~~~~~ 138 (296)
T cd04740 84 WLREFGTPVIASIAGSTVEEFVEVAEKLADAGADAIELNISCPNVK----GGGMAFGTD 138 (296)
T ss_pred HhhcCCCcEEEEEecCCHHHHHHHHHHHHHcCCCEEEEECCCCCCC----CCcccccCC
Confidence 02346899999999999999999998877 689999999999742 225555554
|
DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. |
| >PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats | Back alignment and domain information |
|---|
Probab=98.10 E-value=2.8e-05 Score=74.01 Aligned_cols=114 Identities=16% Similarity=0.254 Sum_probs=83.7
Q ss_pred cCeEEEEeCC-CCCEEEEe----eCCCc----EEEEcCCCCeeEE----EeecCCcceeEEEEeeCCCeEEEeeCCCeEE
Q psy18231 165 SGLMHTRFPV-DGSYCLTC----GSDKK----IKLWNPYRNLLLK----TYGGHAHEVNDATAACDSSQIASGASDKSVI 231 (540)
Q Consensus 165 ~~v~~v~~sp-dg~~lat~----~~dg~----i~iwd~~~~~~~~----~~~~h~~~v~~l~~sp~~~~l~s~s~dg~i~ 231 (540)
....++.||- +...+.|. +.+|. -.+|+...++... ++ .....|.+++++|+...|+.|+.||+|.
T Consensus 206 ~dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsi-pL~s~v~~ca~sp~E~kLvlGC~DgSii 284 (545)
T PF11768_consen 206 NDPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSI-PLPSQVICCARSPSEDKLVLGCEDGSII 284 (545)
T ss_pred CCcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEE-ecCCcceEEecCcccceEEEEecCCeEE
Confidence 4457778876 34445443 33443 3456665553321 22 3678899999999999999999999999
Q ss_pred EEEcCCCceeEeccccCCceeEEEECCCCCEEEEecCCCcEEEEEecCCC
Q psy18231 232 LWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRS 281 (540)
Q Consensus 232 iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~ 281 (540)
+||...+... +....-..+.++|+|+|..+++|+..|.+.+||+.-..
T Consensus 285 LyD~~~~~t~--~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALsp 332 (545)
T PF11768_consen 285 LYDTTRGVTL--LAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALSP 332 (545)
T ss_pred EEEcCCCeee--eeeecccceEEEEcCCCcEEEEEcCCceEEEEEeecCc
Confidence 9998766433 22345567899999999999999999999999987653
|
|
| >PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators [] | Back alignment and domain information |
|---|
Probab=98.10 E-value=0.002 Score=56.84 Aligned_cols=205 Identities=11% Similarity=0.174 Sum_probs=109.0
Q ss_pred EeecCCcceeEEEEeeCCC-eEEEeeCCCeEEEEEcCCCceeEecccc-CCceeEEEECCCCCEEEEecCCCcEEEEEec
Q psy18231 201 TYGGHAHEVNDATAACDSS-QIASGASDKSVILWEVTTGQPVRRWREH-ASKVTCVKFNEDSSVVISGSQDNTVMMWDVK 278 (540)
Q Consensus 201 ~~~~h~~~v~~l~~sp~~~-~l~s~s~dg~i~iwd~~~~~~~~~~~~h-~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~ 278 (540)
.+.+-...+..++|+|+.+ ++++....+.|...+. +|+.++.+.-. .+..-.+++..++.++++.-.++.+.++++.
T Consensus 16 ~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~ 94 (248)
T PF06977_consen 16 PLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTID 94 (248)
T ss_dssp E-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE-
T ss_pred ECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEe
Confidence 4555566799999999765 5555666788888886 57887776533 3568889998888877777678999999985
Q ss_pred CCCCCCcchhhhhHhhhhcCCceeEEEEeecccccccccCceeeEEEeeeecccccceeeeeeccceeEEEeecccceec
Q psy18231 279 SRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQI 358 (540)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (540)
........ ..+..+
T Consensus 95 ~~~~~~~~---------------~~~~~~--------------------------------------------------- 108 (248)
T PF06977_consen 95 DDTTSLDR---------------ADVQKI--------------------------------------------------- 108 (248)
T ss_dssp ---TT--E---------------EEEEEE---------------------------------------------------
T ss_pred ccccccch---------------hhceEE---------------------------------------------------
Confidence 54310000 000000
Q ss_pred ccccccccccchhhhhhcccccEEEEEecC--CeeEeeeCCCeEEEEeCCC---CceEEeee----------CCceEEEE
Q psy18231 359 GDVTPISIHNSCFQALKEARDSITSVHVSD--HEILTASLDCRIRRYDIRT---GNLVTDYV----------GEPIVDAC 423 (540)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~--~~l~~~~~dg~i~iwd~~~---~~~~~~~~----------~~~i~~~~ 423 (540)
.+.....++..+-.++|++ +.|+++-...-..+|.++. ...+.... ...+.+++
T Consensus 109 -----------~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~ 177 (248)
T PF06977_consen 109 -----------SLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLS 177 (248)
T ss_dssp -----------E---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---EEE
T ss_pred -----------ecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceeccccceE
Confidence 0001123456688999988 6777776666666666653 22221111 13578899
Q ss_pred Eec-CCcEEEeecCCCeEEEEeccccchhhhhccCc---------CCcceEEEEecCCCCeEEEeeCCCcEEEE
Q psy18231 424 FTR-DCQCILTCSTDECLRLFDKATGELLEEYKGHK---------SGDFRIECCLDSKDSQIFCGSSDGKIYKW 487 (540)
Q Consensus 424 ~sp-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~---------~~v~~~~~~~s~~~~~l~s~s~dg~i~iw 487 (540)
++| .+.+++.+..+..|..+| .+|+.+..+.-.. ..--.+ ++.++|+ |+..++-+..+++
T Consensus 178 ~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGI--a~d~~G~-LYIvsEpNlfy~f 247 (248)
T PF06977_consen 178 YDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGI--AFDPDGN-LYIVSEPNLFYRF 247 (248)
T ss_dssp EETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEE--EE-TT---EEEEETTTEEEEE
T ss_pred EcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEE--EECCCCC-EEEEcCCceEEEe
Confidence 999 467777788888899999 5666544332111 112334 7888885 4444465655554
|
Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A. |
| >PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators [] | Back alignment and domain information |
|---|
Probab=98.09 E-value=0.0031 Score=55.60 Aligned_cols=200 Identities=10% Similarity=0.112 Sum_probs=113.6
Q ss_pred ecCeEEEEeCCCCC-EEEEeeCCCcEEEEcCCCCeeEEEeecC-CcceeEEEEeeCCCeEEEeeCCCeEEEEEcCCCc--
Q psy18231 164 LSGLMHTRFPVDGS-YCLTCGSDKKIKLWNPYRNLLLKTYGGH-AHEVNDATAACDSSQIASGASDKSVILWEVTTGQ-- 239 (540)
Q Consensus 164 ~~~v~~v~~spdg~-~lat~~~dg~i~iwd~~~~~~~~~~~~h-~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~-- 239 (540)
.+.++.++|+|+.+ ++++....+.|...+. +|+.++++.-. .+....+++..++.++++.-.++.+.+.++....
T Consensus 21 ~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~~~~~ 99 (248)
T PF06977_consen 21 LDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTIDDDTTS 99 (248)
T ss_dssp -S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE----TT
T ss_pred cCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEeccccc
Confidence 45599999999755 5556677788888886 57888877543 3567889998888777766668999999884321
Q ss_pred ----eeEecc-----ccCCceeEEEECCCCCEEEEecCCCcEEEEEecCCCCCCcchhhhhHhhhhcCCceeEEEEeecc
Q psy18231 240 ----PVRRWR-----EHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKS 310 (540)
Q Consensus 240 ----~~~~~~-----~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (540)
....+. .++..+-.++|++.++.|+.+-+..-..++.+.........
T Consensus 100 ~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~------------------------ 155 (248)
T PF06977_consen 100 LDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDL------------------------ 155 (248)
T ss_dssp --EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--------------------------
T ss_pred cchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccce------------------------
Confidence 111111 34567899999998887887777666777776542100000
Q ss_pred cccccccCceeeEEEeeeecccccceeeeeeccceeEEEeecccceecccccccccccchhhhhhcccccEEEEEecC--
Q psy18231 311 TKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEARDSITSVHVSD-- 388 (540)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~-- 388 (540)
.... .............+.+++++|
T Consensus 156 -------------------------------------~~~~----------------~~~~~~~~~~~~d~S~l~~~p~t 182 (248)
T PF06977_consen 156 -------------------------------------FVSD----------------DQDLDDDKLFVRDLSGLSYDPRT 182 (248)
T ss_dssp -------------------------------------EEEE-----------------HHHH-HT--SS---EEEEETTT
T ss_pred -------------------------------------eecc----------------ccccccccceeccccceEEcCCC
Confidence 0000 000001112234567888888
Q ss_pred -CeeEeeeCCCeEEEEeCCCCceEEeee--C---------CceEEEEEecCCcEEEeecCCCeEEEE
Q psy18231 389 -HEILTASLDCRIRRYDIRTGNLVTDYV--G---------EPIVDACFTRDCQCILTCSTDECLRLF 443 (540)
Q Consensus 389 -~~l~~~~~dg~i~iwd~~~~~~~~~~~--~---------~~i~~~~~sp~~~~l~~~~~dg~i~i~ 443 (540)
++++....+..|..+| .+|+.+..+. . ...-.++|.++|++.+++ +-+..++|
T Consensus 183 ~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvs-EpNlfy~f 247 (248)
T PF06977_consen 183 GHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVS-EPNLFYRF 247 (248)
T ss_dssp TEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEEE-TTTEEEEE
T ss_pred CeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEEc-CCceEEEe
Confidence 5777888889999999 5577655443 2 257789999999766665 44555544
|
Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A. |
| >KOG1008|consensus | Back alignment and domain information |
|---|
Probab=98.06 E-value=3e-06 Score=80.62 Aligned_cols=200 Identities=15% Similarity=0.187 Sum_probs=123.5
Q ss_pred cceeEEEEeeC--CCeEEEeeCCCeEEEEEcCCCce--eEeccccCCceeEEEECC-CCCEEEEec----CCCcEEEEEe
Q psy18231 207 HEVNDATAACD--SSQIASGASDKSVILWEVTTGQP--VRRWREHASKVTCVKFNE-DSSVVISGS----QDNTVMMWDV 277 (540)
Q Consensus 207 ~~v~~l~~sp~--~~~l~s~s~dg~i~iwd~~~~~~--~~~~~~h~~~v~~~~~~~-~~~~l~s~~----~dg~i~iwd~ 277 (540)
..+.|++++-+ ...++.|..+|.|-+-.++...- -....+|....++++|++ |.+.||.|- .|-.+.|||+
T Consensus 57 qy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi 136 (783)
T KOG1008|consen 57 QYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDI 136 (783)
T ss_pred CCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceec
Confidence 34556665543 34688899999999988765422 234567888999999998 667777663 2457999999
Q ss_pred cCCCCCCcchhhhhHhhhhcCCceeEEEEeecccccccccCceeeEEEeeeecccccceeeeeeccceeEEEeeccccee
Q psy18231 278 KSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQ 357 (540)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (540)
.+.-..|.....+
T Consensus 137 ~s~ltvPke~~~f------------------------------------------------------------------- 149 (783)
T KOG1008|consen 137 NSLLTVPKESPLF------------------------------------------------------------------- 149 (783)
T ss_pred ccccCCCcccccc-------------------------------------------------------------------
Confidence 8763111110000
Q ss_pred cccccccccccchhhhhhcccccEEEEEecC--CeeEeeeCCCeEEEEeCCCC-ceEEeeeCCceEEEEEec-CCcEEEe
Q psy18231 358 IGDVTPISIHNSCFQALKEARDSITSVHVSD--HEILTASLDCRIRRYDIRTG-NLVTDYVGEPIVDACFTR-DCQCILT 433 (540)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~--~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~i~~~~~sp-~~~~l~~ 433 (540)
. . +......+++|.. +++++|.....+.++|++.. .....+....+..+..+| .++++++
T Consensus 150 ---------s-----~--~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~svnTk~vqG~tVdp~~~nY~cs 213 (783)
T KOG1008|consen 150 ---------S-----S--STLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSVNTKYVQGITVDPFSPNYFCS 213 (783)
T ss_pred ---------c-----c--ccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhhhhhhcccceecCCCCCceec
Confidence 0 0 0111222555554 77888888889999999833 333444445677788888 7778776
Q ss_pred ecCCCeEEEEe-cccc-chhhhhccCcCC----cceEEEEecCCCCeEEEeeCCCcEEEEEec
Q psy18231 434 CSTDECLRLFD-KATG-ELLEEYKGHKSG----DFRIECCLDSKDSQIFCGSSDGKIYKWQLV 490 (540)
Q Consensus 434 ~~~dg~i~i~d-~~~~-~~~~~~~~~~~~----v~~~~~~~s~~~~~l~s~s~dg~i~iwd~~ 490 (540)
-. ||.|.+|| .++- .++..+...+.. +..++++....|...+..-..++|+.||+.
T Consensus 214 ~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~ 275 (783)
T KOG1008|consen 214 NS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDIC 275 (783)
T ss_pred cc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEeccc
Confidence 55 99999999 4333 334444333222 555533333334333344456789999975
|
|
| >TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family | Back alignment and domain information |
|---|
Probab=98.05 E-value=0.013 Score=58.68 Aligned_cols=68 Identities=12% Similarity=0.123 Sum_probs=44.7
Q ss_pred CEEEEeeCCCcEEEEcCCCCeeEEEeecC--C--cceeEEEEeeCCCeEEEee------CCCeEEEEEcCCCceeEecc
Q psy18231 177 SYCLTCGSDKKIKLWNPYRNLLLKTYGGH--A--HEVNDATAACDSSQIASGA------SDKSVILWEVTTGQPVRRWR 245 (540)
Q Consensus 177 ~~lat~~~dg~i~iwd~~~~~~~~~~~~h--~--~~v~~l~~sp~~~~l~s~s------~dg~i~iwd~~~~~~~~~~~ 245 (540)
..++.++.|+.+.-.|.++|+.+...... . ..+++--.--++ .++.+. .+|.|..+|.++|+.+..+.
T Consensus 121 ~~v~v~t~dg~l~ALDa~TGk~~W~~~~~~~~~~~~~tssP~v~~g-~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~ 198 (527)
T TIGR03075 121 GKVFFGTLDARLVALDAKTGKVVWSKKNGDYKAGYTITAAPLVVKG-KVITGISGGEFGVRGYVTAYDAKTGKLVWRRY 198 (527)
T ss_pred CEEEEEcCCCEEEEEECCCCCEEeecccccccccccccCCcEEECC-EEEEeecccccCCCcEEEEEECCCCceeEecc
Confidence 46777788999999999999998776421 1 112211111144 444443 26899999999999887654
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens. |
| >PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.013 Score=55.69 Aligned_cols=82 Identities=12% Similarity=0.203 Sum_probs=59.3
Q ss_pred ceEEEEEecCCcEEEeecCCCeEEEEeccccchhhhhccCcCCcceEEEEecCCC----------------Ce-EEEeeC
Q psy18231 418 PIVDACFTRDCQCILTCSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKD----------------SQ-IFCGSS 480 (540)
Q Consensus 418 ~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~s~~~----------------~~-l~s~s~ 480 (540)
.+.+++.+|++++.++...=|.|.++|+.++..++.+++-...-..--....... .+ ++-+-.
T Consensus 309 ~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvIyapr 388 (415)
T PF14655_consen 309 EGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVIYAPR 388 (415)
T ss_pred eEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEEEEEecc
Confidence 5889999999999999888899999999999999988876543111000111111 12 334556
Q ss_pred CCcEEEEEecCCcceeEEE
Q psy18231 481 DGKIYKWQLVDSSQISTLI 499 (540)
Q Consensus 481 dg~i~iwd~~~~~~~~~~~ 499 (540)
-|.|.||.+++|..+..+.
T Consensus 389 Rg~lEvW~~~~g~Rv~a~~ 407 (415)
T PF14655_consen 389 RGILEVWSMRQGPRVAAFN 407 (415)
T ss_pred CCeEEEEecCCCCEEEEEE
Confidence 8899999999998888776
|
|
| >KOG3617|consensus | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.00015 Score=71.57 Aligned_cols=71 Identities=8% Similarity=-0.018 Sum_probs=63.3
Q ss_pred eEEEEeCCCCCEEEEeeCCCcEEEEcCCCCeeEEEeecCCcceeEEEEeeCCCeEEEeeCCCeEEEEEcCC
Q psy18231 167 LMHTRFPVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTT 237 (540)
Q Consensus 167 v~~v~~spdg~~lat~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~ 237 (540)
+++++|+|..-.|+.|=.-|.+.+|...+.+.......|..+|..+.|||+|..|+|+..-|.|.+|....
T Consensus 62 atSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~ 132 (1416)
T KOG3617|consen 62 ATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDV 132 (1416)
T ss_pred hhhhccChHHHHHhhccccceeEEEecCCceeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEeee
Confidence 56699999988899998899999999877776666677999999999999999999999999999998864
|
|
| >KOG1008|consensus | Back alignment and domain information |
|---|
Probab=97.91 E-value=6.5e-06 Score=78.40 Aligned_cols=162 Identities=15% Similarity=0.213 Sum_probs=102.6
Q ss_pred hhhcccccEEEEEecC---CeeEeee----CCCeEEEEeCCCC--ceEE--ee---eCCceEEEEEecCCcEEEeecCCC
Q psy18231 373 ALKEARDSITSVHVSD---HEILTAS----LDCRIRRYDIRTG--NLVT--DY---VGEPIVDACFTRDCQCILTCSTDE 438 (540)
Q Consensus 373 ~~~~~~~~v~~l~~~~---~~l~~~~----~dg~i~iwd~~~~--~~~~--~~---~~~~i~~~~~sp~~~~l~~~~~dg 438 (540)
...++....++++|++ +.|+.|- .|..+.|||+.++ .+.. .+ ......+++|..+.+++.+|....
T Consensus 97 ~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr 176 (783)
T KOG1008|consen 97 VTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSR 176 (783)
T ss_pred ecccccccccccccccccHHHHHhhhhhhcccCCccceecccccCCCccccccccccccCccccccccCcchhhcccccc
Confidence 3456677888999988 5666663 3667999999877 2211 11 124566899999999999999999
Q ss_pred eEEEEecccc-chhhhhccCcCCcceEEEEecC-CCCeEEEeeCCCcEEEEEe-cCC-cceeEEEec--ccceeeeEEEE
Q psy18231 439 CLRLFDKATG-ELLEEYKGHKSGDFRIECCLDS-KDSQIFCGSSDGKIYKWQL-VDS-SQISTLIHS--VGKAVVNSLCS 512 (540)
Q Consensus 439 ~i~i~d~~~~-~~~~~~~~~~~~v~~~~~~~s~-~~~~l~s~s~dg~i~iwd~-~~~-~~~~~~~~~--~~~~~v~~l~~ 512 (540)
.++++|++.. .....+.. ..+..+ ..+| .+.|+++-. ||.|.+||. ..- .++..+... .....+..++|
T Consensus 177 ~~~ifdlRqs~~~~~svnT--k~vqG~--tVdp~~~nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~ay 251 (783)
T KOG1008|consen 177 SVHIFDLRQSLDSVSSVNT--KYVQGI--TVDPFSPNYFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAY 251 (783)
T ss_pred hhhhhhhhhhhhhhhhhhh--hhcccc--eecCCCCCceeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEe
Confidence 9999999732 22222221 112223 3445 455777665 999999993 222 222222200 11124889999
Q ss_pred cCCCc-EEEeec--CCeeEEEEcccccCCC
Q psy18231 513 HPTRK-HIMSAC--GNNVKLWTAEEDYGQG 539 (540)
Q Consensus 513 s~d~~-~l~s~~--d~~i~iw~~~~~~~~~ 539 (540)
+|... .+++.. .++|+++++..-..++
T Consensus 252 cPtrtglla~l~RdS~tIrlydi~~v~t~~ 281 (783)
T KOG1008|consen 252 CPTRTGLLAVLSRDSITIRLYDICVVGTEG 281 (783)
T ss_pred ccCCcchhhhhccCcceEEEecccccCCcc
Confidence 98753 455555 6799999987654443
|
|
| >PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.0038 Score=58.65 Aligned_cols=152 Identities=13% Similarity=0.204 Sum_probs=87.0
Q ss_pred ccccEEEEEecCCeeEeeeCCCeEEEEeCCCCc-eEEeee-CCceEEEEEecCCcEEEeecCCCeEEEEeccc-cchhhh
Q psy18231 377 ARDSITSVHVSDHEILTASLDCRIRRYDIRTGN-LVTDYV-GEPIVDACFTRDCQCILTCSTDECLRLFDKAT-GELLEE 453 (540)
Q Consensus 377 ~~~~v~~l~~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~-~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~-~~~~~~ 453 (540)
..++|++++.-.+.++++ .++.|.+|++...+ ....-. ..++...+....++++++|.....+.++.... ...+..
T Consensus 87 ~~g~V~ai~~~~~~lv~~-~g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~~~~I~vgD~~~sv~~~~~~~~~~~l~~ 165 (321)
T PF03178_consen 87 VKGPVTAICSFNGRLVVA-VGNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVFKNYILVGDAMKSVSLLRYDEENNKLIL 165 (321)
T ss_dssp ESS-EEEEEEETTEEEEE-ETTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEETTEEEEEESSSSEEEEEEETTTE-EEE
T ss_pred ecCcceEhhhhCCEEEEe-ecCEEEEEEccCcccchhhheecceEEEEEEeccccEEEEEEcccCEEEEEEEccCCEEEE
Confidence 467788888777664444 45889999999887 433322 23334444444567999999888888875543 222333
Q ss_pred hccCcCCcceEEEEecCCCCeEEEeeCCCcEEEEEecC-------Cc-ceeEEEecccceeeeEE---EEcCC--Cc---
Q psy18231 454 YKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVD-------SS-QISTLIHSVGKAVVNSL---CSHPT--RK--- 517 (540)
Q Consensus 454 ~~~~~~~v~~~~~~~s~~~~~l~s~s~dg~i~iwd~~~-------~~-~~~~~~~~~~~~~v~~l---~~s~d--~~--- 517 (540)
+.....+.+..++.+-++++.++.+..+|.+.++.... +. .+.....-.....|+++ .+.|. +.
T Consensus 166 va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~lg~~v~~~~~~~l~~~~~~~~~~ 245 (321)
T PF03178_consen 166 VARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFHLGDIVNSFRRGSLIPRSGSSESP 245 (321)
T ss_dssp EEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE-SS-EEEEEE--SS--SSSS-TT
T ss_pred EEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECCCCcccccccccceeEEEEECCCccceEEEEEeeecCCCCccc
Confidence 33333344455556765667999999999999998763 22 22222211344567777 55552 22
Q ss_pred ---EEEeec-CCeeEE
Q psy18231 518 ---HIMSAC-GNNVKL 529 (540)
Q Consensus 518 ---~l~s~~-d~~i~i 529 (540)
.++.++ +|.|..
T Consensus 246 ~~~~i~~~T~~G~Ig~ 261 (321)
T PF03178_consen 246 NRPQILYGTVDGSIGV 261 (321)
T ss_dssp EEEEEEEEETTS-EEE
T ss_pred ccceEEEEecCCEEEE
Confidence 355555 888873
|
CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A .... |
| >PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.016 Score=56.15 Aligned_cols=87 Identities=9% Similarity=0.059 Sum_probs=55.1
Q ss_pred EEecCCcEEEeecCCCeEEEEeccccchhhhhccCcCCcceEEEEecCCCCeEEEeeCCCcEEEEEecCCcceeEEEecc
Q psy18231 423 CFTRDCQCILTCSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSV 502 (540)
Q Consensus 423 ~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~ 502 (540)
.++.+....+....++.+.+.+....+. +. ..+++..+ +.||+|+++|.-..+|.+.+....-.+.+..+.. .
T Consensus 185 ~l~~~~~~~i~~~~g~~i~~i~~~~~~~---i~-~~~~i~~i--avSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~-~ 257 (410)
T PF04841_consen 185 LLSSDRVVEILLANGETIYIIDENSFKQ---ID-SDGPIIKI--AVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDT-D 257 (410)
T ss_pred EeecCcceEEEEecCCEEEEEEcccccc---cc-CCCCeEEE--EECCCCCEEEEEECCCCEEEEECcccceeEEeec-C
Confidence 3555666666666667777555433211 22 23455555 8999999999999999999988655556555553 2
Q ss_pred cceeeeEEEEcCCC
Q psy18231 503 GKAVVNSLCSHPTR 516 (540)
Q Consensus 503 ~~~~v~~l~~s~d~ 516 (540)
-......+.|.-+.
T Consensus 258 ~~~~p~~~~WCG~d 271 (410)
T PF04841_consen 258 SKSPPKQMAWCGND 271 (410)
T ss_pred cCCCCcEEEEECCC
Confidence 23456677776554
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.0024 Score=47.44 Aligned_cols=100 Identities=16% Similarity=0.247 Sum_probs=69.9
Q ss_pred eEEEEeCC---CC-CEEEEeeCCCcEEEEcCCCCeeEEEeecCCcceeEEEEeeCCCeEEEeeCCCeEEEEEcCCCceeE
Q psy18231 167 LMHTRFPV---DG-SYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPVR 242 (540)
Q Consensus 167 v~~v~~sp---dg-~~lat~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~ 242 (540)
|+++++.. || +.|++|+.|..|++|+ ..+.+.++. ..+.|+++.-... ..++.+..+|+|-+|+- .+.+.
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~--~~e~~~Ei~-e~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~--~~RlW 75 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFK--GDEIVAEIT-ETDKVTSLCSLGG-GRFAYALANGTVGVYDR--SQRLW 75 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEe--CCcEEEEEe-cccceEEEEEcCC-CEEEEEecCCEEEEEeC--cceee
Confidence 56666654 33 4699999999999999 446777776 4677888887765 67999999999999974 33344
Q ss_pred eccccCCceeEEEECC-C--C-CEEEEecCCCcEE
Q psy18231 243 RWREHASKVTCVKFNE-D--S-SVVISGSQDNTVM 273 (540)
Q Consensus 243 ~~~~h~~~v~~~~~~~-~--~-~~l~s~~~dg~i~ 273 (540)
..+. ...+.++.+.. + | ..|++|-.+|.|-
T Consensus 76 RiKS-K~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 76 RIKS-KNQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred eecc-CCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 4443 33356665543 3 3 3688888888764
|
|
| >KOG4640|consensus | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.00012 Score=69.99 Aligned_cols=93 Identities=12% Similarity=0.058 Sum_probs=79.4
Q ss_pred cCeEEEEeCCCCCEEEEeeCCCcEEEEcCCCCeeEEEeecCCccee-EEEEeeCCCeEEEeeCCCeEEEEEcCCCceeEe
Q psy18231 165 SGLMHTRFPVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVN-DATAACDSSQIASGASDKSVILWEVTTGQPVRR 243 (540)
Q Consensus 165 ~~v~~v~~spdg~~lat~~~dg~i~iwd~~~~~~~~~~~~h~~~v~-~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~ 243 (540)
-.|.-+.|+|.-..+|++..+|.|.+..+. .+.+.++.-|...++ +++|.|||+.||.|-.||+|++-|++++..+..
T Consensus 21 ~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~~ 99 (665)
T KOG4640|consen 21 INIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLVS 99 (665)
T ss_pred cceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCceec
Confidence 457788899999999999999999999886 778888887888888 999999999999999999999999999987766
Q ss_pred c-cccCCceeEEEECC
Q psy18231 244 W-REHASKVTCVKFNE 258 (540)
Q Consensus 244 ~-~~h~~~v~~~~~~~ 258 (540)
. ......|.++.|.+
T Consensus 100 ~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 100 FLFSVETDISKGIWDR 115 (665)
T ss_pred cccccccchheeeccc
Confidence 3 23456778888863
|
|
| >cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain | Back alignment and domain information |
|---|
Probab=97.78 E-value=1.9e-05 Score=72.70 Aligned_cols=110 Identities=18% Similarity=0.215 Sum_probs=72.2
Q ss_pred ceecCCceEEeccCCCC-C-HHHHHHHHHcCCCEEEeeeeecccccccc-hhh---------------------------
Q psy18231 11 STLLKNLKHCDSTLWTS-K-LNFRQLVRSHNVDLCFTPMIIADSFIKSS-KAR--------------------------- 60 (540)
Q Consensus 11 ~~~~~~~~~~ap~~~~~-~-~~~r~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--------------------------- 60 (540)
++.+++++++|- -.++ + ..+|.+. +.|++.+.+.-++..+-..++ +.+
T Consensus 8 Gl~l~nPi~~aa-g~~~~~~~~~~~~~-~~G~Gavv~kti~~~~~~~gn~~pr~~~~~~~~~n~~g~~n~e~~s~~~~~~ 85 (299)
T cd02940 8 GIKFPNPFGLAS-APPTTSYPMIRRAF-EAGWGGAVTKTLGLDKDIVTNVSPRIARLRTSGRGQIGFNNIELISEKPLEY 85 (299)
T ss_pred CEEcCCCCEeCC-cCCCCCHHHHHHHH-HhCCCEEEeccccCcCCCCCCCCCeEEEeCCCchhcccccCCccccccCHHH
Confidence 567888998886 2233 2 3444444 347777777777666211110 000
Q ss_pred ----ccccccCCCCCCEEEEEecC-ChhHHHHHHHHhcC-CCCeEeeccCCCceEEEeccccceecccc
Q psy18231 61 ----NNEFSTSPEDTPLVVQFASN-NHDDFVRATQYVAP-HCNGVDLNCGCPQRWAIKEGYGCALLSKQ 123 (540)
Q Consensus 61 ----~~~~~~~~~~~~~~~q~~~~-~~~~~~~~~~~~~~-~~~~id~~~gc~~~~~~~~g~g~~l~~~~ 123 (540)
...+.....+.|+++|+.|. ++++++++++.+++ +++.|++|++||.. ....+.|+.|+.++
T Consensus 86 ~~~~~~~~~~~~~~~p~i~si~G~~~~~~~~~~a~~~~~~gad~ielN~sCP~~-~~~~~~G~~l~~~~ 153 (299)
T cd02940 86 WLKEIRELKKDFPDKILIASIMCEYNKEDWTELAKLVEEAGADALELNFSCPHG-MPERGMGAAVGQDP 153 (299)
T ss_pred HHHHHHHHHhhCCCCeEEEEecCCCCHHHHHHHHHHHHhcCCCEEEEECCCCCC-CCCCCCchhhccCH
Confidence 00000111268999999998 99999999998876 78999999999997 34566788888874
|
DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue. |
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.0065 Score=58.81 Aligned_cols=216 Identities=13% Similarity=0.143 Sum_probs=109.3
Q ss_pred ecCeEEEEeCCCCCEEEEeeCCCcEEEEcCCCCeeEEEeecCCcceeEEEEeeCCCeEEEeeCCCeEEEEEcCCCceeEe
Q psy18231 164 LSGLMHTRFPVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPVRR 243 (540)
Q Consensus 164 ~~~v~~v~~spdg~~lat~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~ 243 (540)
.-....+.++|+|+++++++ ||.-.|+.....+... .+.-...+|.+.+ .+|+-..+++|.|+.--+.+....
T Consensus 32 ~~~p~~ls~npngr~v~V~g-~geY~iyt~~~~r~k~-----~G~g~~~vw~~~n-~yAv~~~~~~I~I~kn~~~~~~k~ 104 (443)
T PF04053_consen 32 EIYPQSLSHNPNGRFVLVCG-DGEYEIYTALAWRNKA-----FGSGLSFVWSSRN-RYAVLESSSTIKIYKNFKNEVVKS 104 (443)
T ss_dssp SS--SEEEE-TTSSEEEEEE-TTEEEEEETTTTEEEE-----EEE-SEEEE-TSS-EEEEE-TTS-EEEEETTEE-TT--
T ss_pred CcCCeeEEECCCCCEEEEEc-CCEEEEEEccCCcccc-----cCceeEEEEecCc-cEEEEECCCeEEEEEcCccccceE
Confidence 34478899999999999965 7888888854444332 2345668898844 577777688999973323332223
Q ss_pred ccccCCceeEEEECCCCCEEEEecCCCcEEEEEecCCCCCCcchhhhhHhhhhcCCceeEEEEeecccccccccCceeeE
Q psy18231 244 WREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHLSNGLLTKL 323 (540)
Q Consensus 244 ~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (540)
++. ...+..+-. |.+|...+. +.|.+||..+++. +.
T Consensus 105 i~~-~~~~~~If~---G~LL~~~~~-~~i~~yDw~~~~~--i~------------------------------------- 140 (443)
T PF04053_consen 105 IKL-PFSVEKIFG---GNLLGVKSS-DFICFYDWETGKL--IR------------------------------------- 140 (443)
T ss_dssp ----SS-EEEEE----SSSEEEEET-TEEEEE-TTT--E--EE-------------------------------------
T ss_pred EcC-CcccceEEc---CcEEEEECC-CCEEEEEhhHcce--ee-------------------------------------
Confidence 322 123444433 777777664 4899999988762 00
Q ss_pred EEeeeecccccceeeeeeccceeEEEeecccceecccccccccccchhhhhhcccccEEEEEecC--CeeEeeeCCCeEE
Q psy18231 324 VFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEARDSITSVHVSD--HEILTASLDCRIR 401 (540)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~--~~l~~~~~dg~i~ 401 (540)
.+ .-.+|..+.|++ ++++..+ +..+.
T Consensus 141 -------------------------------------------------~i--~v~~vk~V~Ws~~g~~val~t-~~~i~ 168 (443)
T PF04053_consen 141 -------------------------------------------------RI--DVSAVKYVIWSDDGELVALVT-KDSIY 168 (443)
T ss_dssp -------------------------------------------------EE--SS-E-EEEEE-TTSSEEEEE--S-SEE
T ss_pred -------------------------------------------------EE--ecCCCcEEEEECCCCEEEEEe-CCeEE
Confidence 11 112378899998 5555555 44677
Q ss_pred EEeCCCC-----------ceEEeee--CCceEEEEEecCCcEEEeecCCCeEEEEeccccchhhhhccCcCCcceEEEEe
Q psy18231 402 RYDIRTG-----------NLVTDYV--GEPIVDACFTRDCQCILTCSTDECLRLFDKATGELLEEYKGHKSGDFRIECCL 468 (540)
Q Consensus 402 iwd~~~~-----------~~~~~~~--~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~ 468 (540)
+++.+.. .....++ ...|.+.+|..+ -++.+ +.. .++. +..|+. .++..-..+++-+ .+
T Consensus 169 il~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d-~fiYt-T~~-~lkY--l~~Ge~-~~i~~ld~~~yll--gy 240 (443)
T PF04053_consen 169 ILKYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVED-CFIYT-TSN-HLKY--LVNGET-GIIAHLDKPLYLL--GY 240 (443)
T ss_dssp EEEE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT-EEEEE--TT-EEEE--EETTEE-EEEEE-SS--EEE--EE
T ss_pred EEEecchhcccccccCchhceEEEEEecceeEEEEEEcC-EEEEE-cCC-eEEE--EEcCCc-ceEEEcCCceEEE--EE
Confidence 7765533 0222222 468889999776 33333 333 6665 333331 1222223445555 56
Q ss_pred cCCCCeEEEeeCCCcEEEEEec
Q psy18231 469 DSKDSQIFCGSSDGKIYKWQLV 490 (540)
Q Consensus 469 s~~~~~l~s~s~dg~i~iwd~~ 490 (540)
.+..+.++....|+.|..+.+.
T Consensus 241 ~~~~~~ly~~Dr~~~v~~~~ld 262 (443)
T PF04053_consen 241 LPKENRLYLIDRDGNVISYELD 262 (443)
T ss_dssp ETTTTEEEEE-TT--EEEEE--
T ss_pred EccCCEEEEEECCCCEEEEEEC
Confidence 6766788888888888888764
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.045 Score=53.03 Aligned_cols=65 Identities=12% Similarity=0.140 Sum_probs=47.3
Q ss_pred EEeCCCCCEEEEeeCC----------C-cEEEEcCCCCeeEEEeecCCcceeEEEEeeCCCeEEEeeCCCeEEEEEcC
Q psy18231 170 TRFPVDGSYCLTCGSD----------K-KIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVT 236 (540)
Q Consensus 170 v~~spdg~~lat~~~d----------g-~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~ 236 (540)
++.+|.|.-+|....+ . .|.||+. .|+++.++.-..+.|.++.|+.+ ..|+....||.++++|+.
T Consensus 34 va~a~~gGpIAi~~d~~k~~~~~~~~p~~I~iys~-sG~ll~~i~w~~~~iv~~~wt~~-e~LvvV~~dG~v~vy~~~ 109 (410)
T PF04841_consen 34 VAVAPYGGPIAIIRDESKLVPVGSAKPNSIQIYSS-SGKLLSSIPWDSGRIVGMGWTDD-EELVVVQSDGTVRVYDLF 109 (410)
T ss_pred EEEcCCCceEEEEecCcccccccCCCCcEEEEECC-CCCEeEEEEECCCCEEEEEECCC-CeEEEEEcCCEEEEEeCC
Confidence 4556666555554322 2 5999995 67778777655589999999975 557777899999999985
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >COG3391 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.023 Score=54.64 Aligned_cols=242 Identities=12% Similarity=0.110 Sum_probs=151.1
Q ss_pred CeEEEEeCCCCCEEEEee-CCCcEEEEcCCCCeeEEEeecCCcceeEEEEeeCCCe-EEEeeCCCeEEEEEcCCCceeEe
Q psy18231 166 GLMHTRFPVDGSYCLTCG-SDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQ-IASGASDKSVILWEVTTGQPVRR 243 (540)
Q Consensus 166 ~v~~v~~spdg~~lat~~-~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~-l~s~s~dg~i~iwd~~~~~~~~~ 243 (540)
....+.+.|++..+.... ....+...+............-...-..++.+++++. .++...++.|.+.|..+.+....
T Consensus 32 ~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~~n~~~~~~~~g~~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~ 111 (381)
T COG3391 32 GPGGVAVNPDGTQVYVANSGSNDVSVIDATSNTVTQSLSVGGVYPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGS 111 (381)
T ss_pred CCceeEEcCccCEEEEEeecCceeeecccccceeeeeccCCCccccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeE
Confidence 556677888886554433 2225555555422222212211133456788888874 45555568999999887777666
Q ss_pred ccccCCceeEEEECCCCCEEEEecC---CCcEEEEEecCCCCCCcchhhhhHhhhhcCCceeEEEEeecccccccccCce
Q psy18231 244 WREHASKVTCVKFNEDSSVVISGSQ---DNTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHLSNGLL 320 (540)
Q Consensus 244 ~~~h~~~v~~~~~~~~~~~l~s~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (540)
..-- .....++++++++.+..+.. ++++.+.|..+.+. ..
T Consensus 112 ~~vG-~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~--~~---------------------------------- 154 (381)
T COG3391 112 IPVG-LGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKV--TA---------------------------------- 154 (381)
T ss_pred eeec-cCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeE--EE----------------------------------
Confidence 5422 26678999999987777655 56777777666541 10
Q ss_pred eeEEEeeeecccccceeeeeeccceeEEEeecccceecccccccccccchhhhhhcccccEEEEEecC--C-eeEeeeCC
Q psy18231 321 TKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEARDSITSVHVSD--H-EILTASLD 397 (540)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~--~-~l~~~~~d 397 (540)
....-..+ ..++++| . ..++-..+
T Consensus 155 ----------------------------------------------------~~~vG~~P-~~~a~~p~g~~vyv~~~~~ 181 (381)
T COG3391 155 ----------------------------------------------------TIPVGNTP-TGVAVDPDGNKVYVTNSDD 181 (381)
T ss_pred ----------------------------------------------------EEecCCCc-ceEEECCCCCeEEEEecCC
Confidence 00000011 5677777 4 34444578
Q ss_pred CeEEEEeCCCCceEE------eeeCCceEEEEEecCCcEEEeecCC---CeEEEEeccccchhhh-hccCcCCcceEEEE
Q psy18231 398 CRIRRYDIRTGNLVT------DYVGEPIVDACFTRDCQCILTCSTD---ECLRLFDKATGELLEE-YKGHKSGDFRIECC 467 (540)
Q Consensus 398 g~i~iwd~~~~~~~~------~~~~~~i~~~~~sp~~~~l~~~~~d---g~i~i~d~~~~~~~~~-~~~~~~~v~~~~~~ 467 (540)
+.|.+.|........ .-.+..-..+.++|+|+++.+.... +.+...|..++..... +.........+ .
T Consensus 182 ~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~v--~ 259 (381)
T COG3391 182 NTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGSGAPRGV--A 259 (381)
T ss_pred CeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEeccccccCCCCce--e
Confidence 999999987766664 1122456788999999977665544 5899999988776554 22222112223 7
Q ss_pred ecCCCCeEEEee-CCCcEEEEEecCCcceeEEE
Q psy18231 468 LDSKDSQIFCGS-SDGKIYKWQLVDSSQISTLI 499 (540)
Q Consensus 468 ~s~~~~~l~s~s-~dg~i~iwd~~~~~~~~~~~ 499 (540)
.+|+|.++.+.. ..+.+.+-|..+........
T Consensus 260 ~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~~ 292 (381)
T COG3391 260 VDPAGKAAYVANSQGGTVSVIDGATDRVVKTGP 292 (381)
T ss_pred ECCCCCEEEEEecCCCeEEEEeCCCCceeeeec
Confidence 899999988874 44889999988777766654
|
|
| >KOG3621|consensus | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.00026 Score=68.70 Aligned_cols=116 Identities=16% Similarity=0.153 Sum_probs=85.3
Q ss_pred ceEEEEEecCCcEEEeecCCCeEEEEeccccchhhhhccCcCCcceEEEEecCCCCeEEEeeCCCcEEEEEecCCcceeE
Q psy18231 418 PIVDACFTRDCQCILTCSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQIST 497 (540)
Q Consensus 418 ~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~ 497 (540)
.+.--+++..+++++.|+.-|.+++|+-..++....-.+-...+. ...+.|++..++|.|+..|.|.++-+..+.+...
T Consensus 35 ~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~-~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~ 113 (726)
T KOG3621|consen 35 RVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGIT-CVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDL 113 (726)
T ss_pred eEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceE-EEEEecchhHhhhhhcCCceEEeehhhccCCCcc
Confidence 344556777899999999999999999766654332221122233 3347899999999999999999998876433221
Q ss_pred E----EecccceeeeEEEEcCCCcEEEeec-CCeeEEEEccc
Q psy18231 498 L----IHSVGKAVVNSLCSHPTRKHIMSAC-GNNVKLWTAEE 534 (540)
Q Consensus 498 ~----~~~~~~~~v~~l~~s~d~~~l~s~~-d~~i~iw~~~~ 534 (540)
. ....|...|++++|++++..+.+|+ .|+|..-.++.
T Consensus 114 ~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 114 DYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred eeeccccccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence 1 1124788999999999999999999 89988877665
|
|
| >PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.037 Score=50.74 Aligned_cols=226 Identities=11% Similarity=0.078 Sum_probs=129.2
Q ss_pred CCCCEEEEeeCCCcEEEEcCCCCeeEEEeecCCcceeEEEEeeCCCeEEEeeCCCeEEEEEcCCCceeEec---------
Q psy18231 174 VDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPVRRW--------- 244 (540)
Q Consensus 174 pdg~~lat~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~--------- 244 (540)
..++.|+.|..+| +.+++........... +...|..+...|+-+.|++-+ |+.+.++++..-.....-
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~-~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~~ 81 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRIL-KLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKSR 81 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCccceeEe-ecceEEEEEEecccCEEEEEc-CCccEEEEchhhccccccccccccccc
Confidence 3577899998888 8899983333233322 234499999999877766665 499999999765433311
Q ss_pred -----cccCCceeEEE--ECCCC-CEEEEecCCCcEEEEEecCCCCCC-cchhhhhHhhhhcCCceeEEEEeeccccccc
Q psy18231 245 -----REHASKVTCVK--FNEDS-SVVISGSQDNTVMMWDVKSRSHHP-IQVRCLNEALKEARDSITSVHSLVKSTKNHL 315 (540)
Q Consensus 245 -----~~h~~~v~~~~--~~~~~-~~l~s~~~dg~i~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (540)
......+...+ -...+ ..|+.+ ..++|.+|......... ..
T Consensus 82 ~~~~~~~~~~~v~~f~~~~~~~~~~~L~va-~kk~i~i~~~~~~~~~f~~~----------------------------- 131 (275)
T PF00780_consen 82 SLPTKLPETKGVSFFAVNGGHEGSRRLCVA-VKKKILIYEWNDPRNSFSKL----------------------------- 131 (275)
T ss_pred cccccccccCCeeEEeeccccccceEEEEE-ECCEEEEEEEECCcccccce-----------------------------
Confidence 11223344444 11233 344444 45688888877642100 00
Q ss_pred ccCceeeEEEeeeecccccceeeeeeccceeEEEeecccceecccccccccccchhhhhhcccccEEEEEecCCeeEeee
Q psy18231 316 SNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEARDSITSVHVSDHEILTAS 395 (540)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~ 395 (540)
. .--.-...+.+++|.++.++.|.
T Consensus 132 -------------------------------------------------------~-ke~~lp~~~~~i~~~~~~i~v~~ 155 (275)
T PF00780_consen 132 -------------------------------------------------------L-KEISLPDPPSSIAFLGNKICVGT 155 (275)
T ss_pred -------------------------------------------------------e-EEEEcCCCcEEEEEeCCEEEEEe
Confidence 0 00012367788888888888887
Q ss_pred CCCeEEEEeCCCCceEEeee--C------------CceEEEEEecCCcEEEeecCCCeEEEEeccccchhh--hhccCcC
Q psy18231 396 LDCRIRRYDIRTGNLVTDYV--G------------EPIVDACFTRDCQCILTCSTDECLRLFDKATGELLE--EYKGHKS 459 (540)
Q Consensus 396 ~dg~i~iwd~~~~~~~~~~~--~------------~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~--~~~~~~~ 459 (540)
.++ ..+.|+.++....-+. . .++..+.. +++.+|++- |..-...| ..|+..+ .++-..
T Consensus 156 ~~~-f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~Ll~~--~~~g~fv~-~~G~~~r~~~i~W~~- 229 (275)
T PF00780_consen 156 SKG-FYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQL-SDNEFLLCY--DNIGVFVN-KNGEPSRKSTIQWSS- 229 (275)
T ss_pred CCc-eEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEe-CCceEEEEe--cceEEEEc-CCCCcCcccEEEcCC-
Confidence 655 7788988765533321 1 12333333 345666543 23333334 3455443 222222
Q ss_pred CcceEEEEecCCCCeEEEeeCCCcEEEEEecCCcceeEEE
Q psy18231 460 GDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLI 499 (540)
Q Consensus 460 ~v~~~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~ 499 (540)
....+ ++. ..||+..+. +.|.||++.+++.++++.
T Consensus 230 ~p~~~--~~~--~pyli~~~~-~~iEV~~~~~~~lvQ~i~ 264 (275)
T PF00780_consen 230 APQSV--AYS--SPYLIAFSS-NSIEVRSLETGELVQTIP 264 (275)
T ss_pred chhEE--EEE--CCEEEEECC-CEEEEEECcCCcEEEEEE
Confidence 23333 333 347776665 459999999999998887
|
These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity |
| >PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.0081 Score=57.22 Aligned_cols=81 Identities=16% Similarity=0.044 Sum_probs=52.4
Q ss_pred cccceeeeeccccccee-ee-eecCeEEEEeCCCCCEEEEeeCCCcEEEEcCCCCeeEEEe-ec-------C--------
Q psy18231 144 PKEWSIRVYRPLTVNRE-LF-VLSGLMHTRFPVDGSYCLTCGSDKKIKLWNPYRNLLLKTY-GG-------H-------- 205 (540)
Q Consensus 144 ~~~~~i~~~~~~~~~~~-~~-h~~~v~~v~~spdg~~lat~~~dg~i~iwd~~~~~~~~~~-~~-------h-------- 205 (540)
+....+.+++..+.... +. ....+....|||||+.+|-.. ++.|.+++..++...+.- .+ -
T Consensus 20 s~~~~y~i~d~~~~~~~~l~~~~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEE 98 (353)
T PF00930_consen 20 SFKGDYYIYDIETGEITPLTPPPPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEE 98 (353)
T ss_dssp EEEEEEEEEETTTTEEEESS-EETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEESES--TTTEEESB--HHHHHH
T ss_pred ccceeEEEEecCCCceEECcCCccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEeccccceeEEcCccceecccc
Confidence 34456777777775422 11 257899999999999999776 689999998877443221 12 0
Q ss_pred -CcceeEEEEeeCCCeEEEee
Q psy18231 206 -AHEVNDATAACDSSQIASGA 225 (540)
Q Consensus 206 -~~~v~~l~~sp~~~~l~s~s 225 (540)
-+.-..+-||||+++||...
T Consensus 99 v~~~~~~~~WSpd~~~la~~~ 119 (353)
T PF00930_consen 99 VFDRRSAVWWSPDSKYLAFLR 119 (353)
T ss_dssp TSSSSBSEEE-TTSSEEEEEE
T ss_pred ccccccceEECCCCCEEEEEE
Confidence 11225688999999987653
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: |
| >smart00320 WD40 WD40 repeats | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.00012 Score=43.37 Aligned_cols=39 Identities=33% Similarity=0.533 Sum_probs=34.8
Q ss_pred CeeEEEeecCCcceeEEEEeeCCCeEEEeeCCCeEEEEE
Q psy18231 196 NLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWE 234 (540)
Q Consensus 196 ~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~dg~i~iwd 234 (540)
+++...+..|...|.++.|++++.++++++.|+.+++|+
T Consensus 2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred cEEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 456677788999999999999999999999999999996
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. |
| >PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.015 Score=54.69 Aligned_cols=172 Identities=16% Similarity=0.184 Sum_probs=107.7
Q ss_pred CcEEEEcCCCCeeEEEeec-CCcceeEEEEee---C----CCeEEEeeC----------CCeEEEEEcCCC----ceeEe
Q psy18231 186 KKIKLWNPYRNLLLKTYGG-HAHEVNDATAAC---D----SSQIASGAS----------DKSVILWEVTTG----QPVRR 243 (540)
Q Consensus 186 g~i~iwd~~~~~~~~~~~~-h~~~v~~l~~sp---~----~~~l~s~s~----------dg~i~iwd~~~~----~~~~~ 243 (540)
+.|++.|..+.+.+.++.- ....+++++... + ..+|+.|.. .|.|.++++... ..+..
T Consensus 2 s~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~ 81 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKL 81 (321)
T ss_dssp -EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEE
T ss_pred cEEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEE
Confidence 4688899888877766542 234455554433 2 466776643 288999999884 22222
Q ss_pred c--cccCCceeEEEECCCCCEEEEecCCCcEEEEEecCCCCCCcchhhhhHhhhhcCCceeEEEEeecccccccccCcee
Q psy18231 244 W--REHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHLSNGLLT 321 (540)
Q Consensus 244 ~--~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (540)
+ ....++|++++-. ++. |+.+. .+.|.+|++...+. ..
T Consensus 82 i~~~~~~g~V~ai~~~-~~~-lv~~~-g~~l~v~~l~~~~~--l~----------------------------------- 121 (321)
T PF03178_consen 82 IHSTEVKGPVTAICSF-NGR-LVVAV-GNKLYVYDLDNSKT--LL----------------------------------- 121 (321)
T ss_dssp EEEEEESS-EEEEEEE-TTE-EEEEE-TTEEEEEEEETTSS--EE-----------------------------------
T ss_pred EEEEeecCcceEhhhh-CCE-EEEee-cCEEEEEEccCccc--ch-----------------------------------
Confidence 2 2457889998876 344 44443 47899999987650 00
Q ss_pred eEEEeeeecccccceeeeeeccceeEEEeecccceecccccccccccchhhhhhcccccEEEEEecCCeeEeeeCCCeEE
Q psy18231 322 KLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEARDSITSVHVSDHEILTASLDCRIR 401 (540)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~dg~i~ 401 (540)
..........+.++....+++++|.....+.
T Consensus 122 -------------------------------------------------~~~~~~~~~~i~sl~~~~~~I~vgD~~~sv~ 152 (321)
T PF03178_consen 122 -------------------------------------------------KKAFYDSPFYITSLSVFKNYILVGDAMKSVS 152 (321)
T ss_dssp -------------------------------------------------EEEEE-BSSSEEEEEEETTEEEEEESSSSEE
T ss_pred -------------------------------------------------hhheecceEEEEEEeccccEEEEEEcccCEE
Confidence 0001112236777887788999999888888
Q ss_pred EEeCCC-CceEEeee----CCceEEEEEecCCcEEEeecCCCeEEEEecc
Q psy18231 402 RYDIRT-GNLVTDYV----GEPIVDACFTRDCQCILTCSTDECLRLFDKA 446 (540)
Q Consensus 402 iwd~~~-~~~~~~~~----~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~ 446 (540)
++..+. ...+..+. ...++++.|-++++.++++..+|.+.++...
T Consensus 153 ~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~ 202 (321)
T PF03178_consen 153 LLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYN 202 (321)
T ss_dssp EEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-
T ss_pred EEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEEC
Confidence 774443 22222222 2468899998777899999999999999775
|
CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A .... |
| >cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes | Back alignment and domain information |
|---|
Probab=97.68 E-value=9.9e-05 Score=67.93 Aligned_cols=86 Identities=9% Similarity=0.025 Sum_probs=65.5
Q ss_pred ecCCceEEeccCCCC------CHHHHHHHHHcCCCEEEeeeeecccccccchhhccccccCCCCCCEEEEEecC-ChhHH
Q psy18231 13 LLKNLKHCDSTLWTS------KLNFRQLVRSHNVDLCFTPMIIADSFIKSSKARNNEFSTSPEDTPLVVQFASN-NHDDF 85 (540)
Q Consensus 13 ~~~~~~~~ap~~~~~------~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~-~~~~~ 85 (540)
.+..++++|||.+.+ +.++++.++++|+.+.++.|... ....+. ...+.|+.+|+++. +++.+
T Consensus 62 ~~~~Pi~iapm~g~~~~~~~~~~~la~aa~~~g~~~~~~~~~~~---------~~~~i~-~~~~~~~~~ql~~~~~~~~~ 131 (299)
T cd02809 62 KLAMPFGIAPTGLQGLAHPDGELATARAAAAAGIPFTLSTVSTT---------SLEEVA-AAAPGPRWFQLYVPRDREIT 131 (299)
T ss_pred ecCCCeeeCcccccccCCchHHHHHHHHHHHcCCCEEecCCCcC---------CHHHHH-HhcCCCeEEEEeecCCHHHH
Confidence 346799999998876 78999999999999999987521 111111 11227999999987 78888
Q ss_pred HHHHHHhcC-CCCeEeeccCCCce
Q psy18231 86 VRATQYVAP-HCNGVDLNCGCPQR 108 (540)
Q Consensus 86 ~~~~~~~~~-~~~~id~~~gc~~~ 108 (540)
.+.++.+.. +.+.|++|++||..
T Consensus 132 ~~~i~~~~~~g~~~i~l~~~~p~~ 155 (299)
T cd02809 132 EDLLRRAEAAGYKALVLTVDTPVL 155 (299)
T ss_pred HHHHHHHHHcCCCEEEEecCCCCC
Confidence 877776554 88999999999963
|
This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. |
| >PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.021 Score=56.01 Aligned_cols=116 Identities=13% Similarity=0.092 Sum_probs=71.2
Q ss_pred ecCeEEEEeCCCCCEEEEe-eCC----CcEEEEcCCCCeeEEEeecCCcceeEEEEeeCCCeEEEeeCC-----------
Q psy18231 164 LSGLMHTRFPVDGSYCLTC-GSD----KKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASD----------- 227 (540)
Q Consensus 164 ~~~v~~v~~spdg~~lat~-~~d----g~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~d----------- 227 (540)
.-.+...++||||++||.+ +.. .++++.|+++++.+...-. ......+.|.++++.|+....+
T Consensus 123 ~~~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~-~~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~ 201 (414)
T PF02897_consen 123 YVSLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIE-NPKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYP 201 (414)
T ss_dssp -EEEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEE-EEESEEEEECTTSSEEEEEECSTTTSS-CCGCC
T ss_pred eEEeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCccc-ccccceEEEeCCCCEEEEEEeCcccccccCCCC
Confidence 3345578899999999854 333 3699999999977654311 1122339999998887665433
Q ss_pred CeEEEEEcCCCcee--EeccccCCc--eeEEEECCCCCEEEEecCC----CcEEEEEecCC
Q psy18231 228 KSVILWEVTTGQPV--RRWREHASK--VTCVKFNEDSSVVISGSQD----NTVMMWDVKSR 280 (540)
Q Consensus 228 g~i~iwd~~~~~~~--~~~~~h~~~--v~~~~~~~~~~~l~s~~~d----g~i~iwd~~~~ 280 (540)
..|..|.+.+...- ..+...... ...+..++|+++|+..+.. ..+.+.++...
T Consensus 202 ~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~ 262 (414)
T PF02897_consen 202 RQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDG 262 (414)
T ss_dssp EEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCT
T ss_pred cEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEecccc
Confidence 24788888766432 334333332 5678889999987754332 23566666553
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A .... |
| >KOG2444|consensus | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.00014 Score=60.82 Aligned_cols=143 Identities=13% Similarity=0.085 Sum_probs=92.1
Q ss_pred CeeEeeeCCCeEEEEeCCCCceEEeeeCCceEE-EEEecCCcEEEeecCCCeEEEEeccc-cchhhhhccCcCCcceEEE
Q psy18231 389 HEILTASLDCRIRRYDIRTGNLVTDYVGEPIVD-ACFTRDCQCILTCSTDECLRLFDKAT-GELLEEYKGHKSGDFRIEC 466 (540)
Q Consensus 389 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~i~~-~~~sp~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~v~~~~~ 466 (540)
..+...+.||.++-++++..+....-.. .+.+ ...-.-+..+++|+.+|.|++|+... +.....+..-...+..+ +
T Consensus 31 ~~l~~~sa~~~v~~~~~~k~k~s~rse~-~~~e~~~v~~~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~-I 108 (238)
T KOG2444|consen 31 HLLRATSADGLVRERKVRKHKESCRSER-FIDEGQRVVTASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLG-I 108 (238)
T ss_pred hhhccccCCcccccchhhhhhhhhhhhh-hhhcceeecccCceEEeecccceEEEecCCccchHHHhhhcccccceec-c
Confidence 4466677888888888775443211110 1111 11112346789999999999998762 22222222222222221 1
Q ss_pred EecCCCCeEEEeeCCCcEEEEEecCCcceeEEEecccc-eeeeEEEEcCCCcEEEee--c-CCeeEEEEcccc
Q psy18231 467 CLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGK-AVVNSLCSHPTRKHIMSA--C-GNNVKLWTAEED 535 (540)
Q Consensus 467 ~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~-~~v~~l~~s~d~~~l~s~--~-d~~i~iw~~~~~ 535 (540)
.-..++.+..++..||.|+.|++.-++.+.... .|. .++..+..+..+++|+.+ + |..++.|+++.-
T Consensus 109 p~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g--~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~~ 179 (238)
T KOG2444|consen 109 PNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVG--QHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEKI 179 (238)
T ss_pred ccccccceeEEeccCCceeeeccccCceeeeec--cccCCCcceeEEecCCceEEeeccccchhhhhcchhhh
Confidence 223445578899999999999999888887776 676 677777777778888888 7 889999998754
|
|
| >PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.05 Score=49.88 Aligned_cols=230 Identities=13% Similarity=0.154 Sum_probs=127.0
Q ss_pred CCCeEEEeeCCCeEEEEEcCC-CceeEeccccCCceeEEEECCCCCEEEEecCCCcEEEEEecCCCCCCcchhhhhHhhh
Q psy18231 217 DSSQIASGASDKSVILWEVTT-GQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQVRCLNEALK 295 (540)
Q Consensus 217 ~~~~l~s~s~dg~i~iwd~~~-~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 295 (540)
.++.|+.|..+| +.++++.. .+..... +...|..+...|+-+.|++-+ |+.+.++++................
T Consensus 6 ~~~~L~vGt~~G-l~~~~~~~~~~~~~i~--~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~-- 79 (275)
T PF00780_consen 6 WGDRLLVGTEDG-LYVYDLSDPSKPTRIL--KLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPK-- 79 (275)
T ss_pred CCCEEEEEECCC-EEEEEecCCccceeEe--ecceEEEEEEecccCEEEEEc-CCccEEEEchhhccccccccccccc--
Confidence 578899999998 89999833 3333322 233499999999877777765 5999999998765311110000000
Q ss_pred hcCCceeEEEEeecccccccccCceeeEEEeeeecccccceeeeeeccceeEEEeecccceecccccccccccchhhhhh
Q psy18231 296 EARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALK 375 (540)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (540)
........
T Consensus 80 ------------------------------------------------------------------------~~~~~~~~ 87 (275)
T PF00780_consen 80 ------------------------------------------------------------------------SRSLPTKL 87 (275)
T ss_pred ------------------------------------------------------------------------cccccccc
Confidence 00000000
Q ss_pred cccccEEEEE----ecCCeeEeeeCCCeEEEEeCCCC-----ceEEeee-CCceEEEEEecCCcEEEeecCCCeEEEEec
Q psy18231 376 EARDSITSVH----VSDHEILTASLDCRIRRYDIRTG-----NLVTDYV-GEPIVDACFTRDCQCILTCSTDECLRLFDK 445 (540)
Q Consensus 376 ~~~~~v~~l~----~~~~~l~~~~~dg~i~iwd~~~~-----~~~~~~~-~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~ 445 (540)
.....+...+ ......++.....+|.+|..... +..+++. ...+..++|. ++.++.|..+ ...+.|+
T Consensus 88 ~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~lp~~~~~i~~~--~~~i~v~~~~-~f~~idl 164 (275)
T PF00780_consen 88 PETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISLPDPPSSIAFL--GNKICVGTSK-GFYLIDL 164 (275)
T ss_pred cccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEEcCCCcEEEEEe--CCEEEEEeCC-ceEEEec
Confidence 1111222222 11133344444558888877653 3445554 3788999998 5567777654 4788898
Q ss_pred cccchhhhhccCc---------CCcceEEEEecCCCCeEEEeeCCCcEEEEEecCCccee--EEEecccceeeeEEEEcC
Q psy18231 446 ATGELLEEYKGHK---------SGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQIS--TLIHSVGKAVVNSLCSHP 514 (540)
Q Consensus 446 ~~~~~~~~~~~~~---------~~v~~~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~--~~~~~~~~~~v~~l~~s~ 514 (540)
.++.....+.... .....+.+.--+++.+|++- |..-.+.| ..|++.+ .+. -...+.++++.
T Consensus 165 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Ll~~--~~~g~fv~-~~G~~~r~~~i~---W~~~p~~~~~~- 237 (275)
T PF00780_consen 165 NTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQLSDNEFLLCY--DNIGVFVN-KNGEPSRKSTIQ---WSSAPQSVAYS- 237 (275)
T ss_pred CCCCceEEeCccCCcchhhhcccCCCceEEEEeCCceEEEEe--cceEEEEc-CCCCcCcccEEE---cCCchhEEEEE-
Confidence 8765433221111 01111221223456677654 22333334 4565544 343 23456677764
Q ss_pred CCcEEEeecCCeeEEEEcccc
Q psy18231 515 TRKHIMSACGNNVKLWTAEED 535 (540)
Q Consensus 515 d~~~l~s~~d~~i~iw~~~~~ 535 (540)
..+|++..++.|.||++.++
T Consensus 238 -~pyli~~~~~~iEV~~~~~~ 257 (275)
T PF00780_consen 238 -SPYLIAFSSNSIEVRSLETG 257 (275)
T ss_pred -CCEEEEECCCEEEEEECcCC
Confidence 46888888777999999876
|
These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity |
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.0016 Score=62.72 Aligned_cols=132 Identities=18% Similarity=0.140 Sum_probs=83.5
Q ss_pred CeEEEEeCCCCceEEeeeC-CceEEEEEecCCcEEEeec-CCCe--EEEEeccccchhhhhccCcCCcceEEEEecCCCC
Q psy18231 398 CRIRRYDIRTGNLVTDYVG-EPIVDACFTRDCQCILTCS-TDEC--LRLFDKATGELLEEYKGHKSGDFRIECCLDSKDS 473 (540)
Q Consensus 398 g~i~iwd~~~~~~~~~~~~-~~i~~~~~sp~~~~l~~~~-~dg~--i~i~d~~~~~~~~~~~~~~~~v~~~~~~~s~~~~ 473 (540)
..+.++|+++++....... ..-..-+|+|||+.|+... .||. |+++|+..++..+ +....+.-. .-.|+|||+
T Consensus 218 ~~i~~~~l~~g~~~~i~~~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~~~-Lt~~~gi~~--~Ps~spdG~ 294 (425)
T COG0823 218 PRIYYLDLNTGKRPVILNFNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNLPR-LTNGFGINT--SPSWSPDGS 294 (425)
T ss_pred ceEEEEeccCCccceeeccCCccCCccCCCCCCEEEEEECCCCCccEEEEcCCCCccee-cccCCcccc--CccCCCCCC
Confidence 4689999998877666553 4455668999999877654 4554 6777887766333 433222222 237999999
Q ss_pred eEEEeeC-CC--cEEEEEecCCcceeEEEecccceeeeEEEEcCCCcEEEeec--CCe--eEEEEcccc
Q psy18231 474 QIFCGSS-DG--KIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC--GNN--VKLWTAEED 535 (540)
Q Consensus 474 ~l~s~s~-dg--~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~--d~~--i~iw~~~~~ 535 (540)
+++-.+. .| .|.+++.+.+.. ..+. .....-..-.|||||++|+..+ +|. |.+.++.++
T Consensus 295 ~ivf~Sdr~G~p~I~~~~~~g~~~-~riT--~~~~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~ 360 (425)
T COG0823 295 KIVFTSDRGGRPQIYLYDLEGSQV-TRLT--FSGGGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLASG 360 (425)
T ss_pred EEEEEeCCCCCcceEEECCCCCce-eEee--ccCCCCcCccCCCCCCEEEEEeccCCceeeEEeccCCC
Confidence 9776653 44 366666555444 4444 2222233778999999999877 455 555555443
|
|
| >PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.036 Score=51.59 Aligned_cols=267 Identities=13% Similarity=0.104 Sum_probs=112.0
Q ss_pred EcCCCCeeEEEeecCCc-----ceeEEEEeeCCCeEEEeeC-CC--eEEEEEcCCCceeEeccccCCceeEEEECCCCCE
Q psy18231 191 WNPYRNLLLKTYGGHAH-----EVNDATAACDSSQIASGAS-DK--SVILWEVTTGQPVRRWREHASKVTCVKFNEDSSV 262 (540)
Q Consensus 191 wd~~~~~~~~~~~~h~~-----~v~~l~~sp~~~~l~s~s~-dg--~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 262 (540)
-|..||..+..+..+.. -.+.=+|.+||+.|+-++. || .+.+.|+.+++..+...+.........++|+++.
T Consensus 15 ~D~~TG~~VtrLT~~~~~~h~~YF~~~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~ 94 (386)
T PF14583_consen 15 IDPDTGHRVTRLTPPDGHSHRLYFYQNCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRA 94 (386)
T ss_dssp E-TTT--EEEE-S-TTS-EE---TTS--B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSE
T ss_pred eCCCCCceEEEecCCCCcccceeecCCCcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCe
Confidence 37788888888764333 2333467788976655544 54 6777788888776654433233345667788887
Q ss_pred EEEecCCCcEEEEEecCCCCCCcchhhhhHhhhhcCCceeEEEEeecccccccccCceeeEEEeeeecccccceeeeeec
Q psy18231 263 VISGSQDNTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMS 342 (540)
Q Consensus 263 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (540)
++-...+.+|+-.|+++.+...+.. ...... +....+..+
T Consensus 95 ~~Yv~~~~~l~~vdL~T~e~~~vy~---------------------------------------~p~~~~-g~gt~v~n~ 134 (386)
T PF14583_consen 95 LYYVKNGRSLRRVDLDTLEERVVYE---------------------------------------VPDDWK-GYGTWVANS 134 (386)
T ss_dssp EEEEETTTEEEEEETTT--EEEEEE-----------------------------------------TTEE-EEEEEEE-T
T ss_pred EEEEECCCeEEEEECCcCcEEEEEE---------------------------------------CCcccc-cccceeeCC
Confidence 7665555688888888876322210 000000 000000011
Q ss_pred cceeEEEeecccceecccccccccccchhhhhhcccccEEEEEecCCeeEeeeCCCeEEEEeCCCCceEEeeeC-CceEE
Q psy18231 343 TQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEARDSITSVHVSDHEILTASLDCRIRRYDIRTGNLVTDYVG-EPIVD 421 (540)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~i~~ 421 (540)
+....+.... ... +..+... .... ..+.-+-....|...|+.+|+....+.. ..+.-
T Consensus 135 -d~t~~~g~e~-~~~--d~~~l~~-~~~f-----------------~e~~~a~p~~~i~~idl~tG~~~~v~~~~~wlgH 192 (386)
T PF14583_consen 135 -DCTKLVGIEI-SRE--DWKPLTK-WKGF-----------------REFYEARPHCRIFTIDLKTGERKVVFEDTDWLGH 192 (386)
T ss_dssp -TSSEEEEEEE-EGG--G-----S-HHHH-----------------HHHHHC---EEEEEEETTT--EEEEEEESS-EEE
T ss_pred -CccEEEEEEE-eeh--hccCccc-cHHH-----------------HHHHhhCCCceEEEEECCCCceeEEEecCccccC
Confidence 1111111000 000 0000000 0000 1111222234566778888887655553 67889
Q ss_pred EEEecCCcEEEeecCCC-----eEEEEeccc-cchhhhhccCcCCcceEEEEecCCCCeEEEe-----eCCCcEEEEEec
Q psy18231 422 ACFTRDCQCILTCSTDE-----CLRLFDKAT-GELLEEYKGHKSGDFRIECCLDSKDSQIFCG-----SSDGKIYKWQLV 490 (540)
Q Consensus 422 ~~~sp~~~~l~~~~~dg-----~i~i~d~~~-~~~~~~~~~~~~~v~~~~~~~s~~~~~l~s~-----s~dg~i~iwd~~ 490 (540)
+.|||...-++.=+.+| .-|||-+.+ +...+.+..+.....+-.=-|.+||..|.-- +.+..|.-+|+.
T Consensus 193 ~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~ 272 (386)
T PF14583_consen 193 VQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPD 272 (386)
T ss_dssp EEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TT
T ss_pred cccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEEEeecCCCCceEEEeeCCC
Confidence 99999665555543322 125554432 3333333333332222222589999875542 235567778888
Q ss_pred CCcceeEEEecccceeeeEEEEcCCCcEEEeec
Q psy18231 491 DSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC 523 (540)
Q Consensus 491 ~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~ 523 (540)
+++...... ......+--++||++++-=+
T Consensus 273 t~~~~~~~~----~p~~~H~~ss~Dg~L~vGDG 301 (386)
T PF14583_consen 273 TGERRRLME----MPWCSHFMSSPDGKLFVGDG 301 (386)
T ss_dssp T--EEEEEE----E-SEEEEEE-TTSSEEEEEE
T ss_pred CCCceEEEe----CCceeeeEEcCCCCEEEecC
Confidence 876543332 22355677789998876533
|
|
| >PRK13616 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.016 Score=58.46 Aligned_cols=125 Identities=17% Similarity=0.163 Sum_probs=67.8
Q ss_pred CeEEEEeCCCCceEEeeeCCceEEEEEecCCcEEEeecCCCeEEE---Eeccccc-hh---hhhcc-CcCCcceEEEEec
Q psy18231 398 CRIRRYDIRTGNLVTDYVGEPIVDACFTRDCQCILTCSTDECLRL---FDKATGE-LL---EEYKG-HKSGDFRIECCLD 469 (540)
Q Consensus 398 g~i~iwd~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~i---~d~~~~~-~~---~~~~~-~~~~v~~~~~~~s 469 (540)
+.+.+.+++.+.... -....|..+.|||||..++... ++.|++ -....|+ .+ ..+.. -...+..+ .|.
T Consensus 430 gql~~~~vd~ge~~~-~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l--~W~ 505 (591)
T PRK13616 430 GQLARTPVDASAVAS-RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPGLGDTAVSL--DWR 505 (591)
T ss_pred ceEEEEeccCchhhh-ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeecccCCccccc--eEe
Confidence 345555666555443 2235699999999999888765 467777 4434443 11 11111 11223334 788
Q ss_pred CCCCeEEEeeCCCcEEEEEecC-CcceeEEEecccceeeeEEEEcCCCcEEEeecCCeeE
Q psy18231 470 SKDSQIFCGSSDGKIYKWQLVD-SSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVK 528 (540)
Q Consensus 470 ~~~~~l~s~s~dg~i~iwd~~~-~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~d~~i~ 528 (540)
.++.++ .+..++...+|.+.- |.....+.......++.+++=+++ .++++.+++.+.
T Consensus 506 ~~~~L~-V~~~~~~~~v~~v~vDG~~~~~~~~~n~~~~v~~vaa~~~-~iyv~~~~g~~~ 563 (591)
T PRK13616 506 TGDSLV-VGRSDPEHPVWYVNLDGSNSDALPSRNLSAPVVAVAASPS-TVYVTDARAVLQ 563 (591)
T ss_pred cCCEEE-EEecCCCCceEEEecCCccccccCCCCccCceEEEecCCc-eEEEEcCCceEE
Confidence 888854 555555555666542 333222231123567888887763 444333366443
|
|
| >smart00320 WD40 WD40 repeats | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.00023 Score=42.11 Aligned_cols=38 Identities=32% Similarity=0.611 Sum_probs=33.6
Q ss_pred ceeEeccccCCceeEEEECCCCCEEEEecCCCcEEEEE
Q psy18231 239 QPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWD 276 (540)
Q Consensus 239 ~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd 276 (540)
++...+..|...|.++.|.+++..+++++.|+.+++|+
T Consensus 3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 45566778899999999999999999999999999996
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. |
| >PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.0021 Score=65.74 Aligned_cols=140 Identities=16% Similarity=0.149 Sum_probs=94.0
Q ss_pred CeeEee-eCCCeEEEEeCCCCceEEeeeCC-ceEEEEEecC-------CcEEEeecCCCeEEEEeccccc-hhhhhccC-
Q psy18231 389 HEILTA-SLDCRIRRYDIRTGNLVTDYVGE-PIVDACFTRD-------CQCILTCSTDECLRLFDKATGE-LLEEYKGH- 457 (540)
Q Consensus 389 ~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~-~i~~~~~sp~-------~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~- 457 (540)
++|+.. .....|+-.|++.|+.+..+.-+ .+.-..+.|+ ....+.|-.++.+..||.+-.. .+..-..|
T Consensus 494 ~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~ 573 (794)
T PF08553_consen 494 NMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQ 573 (794)
T ss_pred ceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccccc
Confidence 334433 34678999999999999998753 2223444453 2335667778889999988532 11111111
Q ss_pred ---cCCcceEEEEecCCCCeEEEeeCCCcEEEEEecCCcceeEEEecccceeeeEEEEcCCCcEEEeecCCeeEEEEcc
Q psy18231 458 ---KSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAE 533 (540)
Q Consensus 458 ---~~~v~~~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~d~~i~iw~~~ 533 (540)
.....++ +-+.+ .+||+|+.+|.||+|| +.|+.-++.- ++-..+|.+|..+.||++|++.++..|.+++..
T Consensus 574 Y~~~~~Fs~~--aTt~~-G~iavgs~~G~IRLyd-~~g~~AKT~l-p~lG~pI~~iDvt~DGkwilaTc~tyLlLi~t~ 647 (794)
T PF08553_consen 574 YSSKNNFSCF--ATTED-GYIAVGSNKGDIRLYD-RLGKRAKTAL-PGLGDPIIGIDVTADGKWILATCKTYLLLIDTL 647 (794)
T ss_pred cccCCCceEE--EecCC-ceEEEEeCCCcEEeec-ccchhhhhcC-CCCCCCeeEEEecCCCcEEEEeecceEEEEEEe
Confidence 1222333 44444 4899999999999999 4554433332 266789999999999999999998899998874
|
Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ]. |
| >COG3386 Gluconolactonase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.072 Score=48.93 Aligned_cols=101 Identities=8% Similarity=0.117 Sum_probs=65.0
Q ss_pred ceEEEEEecCCcEEEeecC-CCeEEEEeccc--cchh-----hhhccCcCCcceEEEEecCCCCeEEEeeCCC-cEEEEE
Q psy18231 418 PIVDACFTRDCQCILTCST-DECLRLFDKAT--GELL-----EEYKGHKSGDFRIECCLDSKDSQIFCGSSDG-KIYKWQ 488 (540)
Q Consensus 418 ~i~~~~~sp~~~~l~~~~~-dg~i~i~d~~~--~~~~-----~~~~~~~~~v~~~~~~~s~~~~~l~s~s~dg-~i~iwd 488 (540)
.-+.++||||++.|+.+.. .+.|+-|++.. +..- ..+..+.+..-.+ +...+|.+-+++-.+| .|.+|+
T Consensus 164 ~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~--~vDadG~lw~~a~~~g~~v~~~~ 241 (307)
T COG3386 164 IPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGM--AVDADGNLWVAAVWGGGRVVRFN 241 (307)
T ss_pred ecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCce--EEeCCCCEEEecccCCceEEEEC
Confidence 4568999999987777665 47888887752 2111 1111112222223 5667787765555554 899999
Q ss_pred ecCCcceeEEEecccceeeeEEEEc-CCCcEEEeec
Q psy18231 489 LVDSSQISTLIHSVGKAVVNSLCSH-PTRKHIMSAC 523 (540)
Q Consensus 489 ~~~~~~~~~~~~~~~~~~v~~l~~s-~d~~~l~s~~ 523 (540)
.. ++++..++ .....+++++|- |+.+.|...+
T Consensus 242 pd-G~l~~~i~--lP~~~~t~~~FgG~~~~~L~iTs 274 (307)
T COG3386 242 PD-GKLLGEIK--LPVKRPTNPAFGGPDLNTLYITS 274 (307)
T ss_pred CC-CcEEEEEE--CCCCCCccceEeCCCcCEEEEEe
Confidence 76 99999998 444778888885 5555555444
|
|
| >KOG4640|consensus | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.00032 Score=67.25 Aligned_cols=95 Identities=11% Similarity=0.025 Sum_probs=78.6
Q ss_pred CceEEEEEecCCcEEEeecCCCeEEEEeccccchhhhhccCcCCcceEEEEecCCCCeEEEeeCCCcEEEEEecCCccee
Q psy18231 417 EPIVDACFTRDCQCILTCSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQIS 496 (540)
Q Consensus 417 ~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~ 496 (540)
-.+..+.|+|.-.++|.+..+|.|.+..+. .+.+.++..|...++ ..++|.|||+.||.|-.||+|++-|++++..+.
T Consensus 21 ~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~-~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~ 98 (665)
T KOG4640|consen 21 INIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVT-ASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLV 98 (665)
T ss_pred cceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccc-eeeeecCCCCEEEEEecCCeEEEEEccCCCcee
Confidence 457889999999999999999999999887 777888887777777 334999999999999999999999999998877
Q ss_pred EEEecccceeeeEEEEcC
Q psy18231 497 TLIHSVGKAVVNSLCSHP 514 (540)
Q Consensus 497 ~~~~~~~~~~v~~l~~s~ 514 (540)
.... .-...|.++-|++
T Consensus 99 ~~~~-s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 99 SFLF-SVETDISKGIWDR 115 (665)
T ss_pred cccc-ccccchheeeccc
Confidence 7321 3456788888863
|
|
| >PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.029 Score=57.72 Aligned_cols=144 Identities=19% Similarity=0.257 Sum_probs=92.8
Q ss_pred CCeEEEe-eCCCeEEEEEcCCCceeEeccccCCc-eeEEEECC-----CCCEEEEecCCCcEEEEEecCCCCCCcchhhh
Q psy18231 218 SSQIASG-ASDKSVILWEVTTGQPVRRWREHASK-VTCVKFNE-----DSSVVISGSQDNTVMMWDVKSRSHHPIQVRCL 290 (540)
Q Consensus 218 ~~~l~s~-s~dg~i~iwd~~~~~~~~~~~~h~~~-v~~~~~~~-----~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~ 290 (540)
.++|+.- .....|.-.|++.|+.+..+..|... |..++-.. +....+.|-.+..+..||.+-.....+.
T Consensus 493 ~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~---- 568 (794)
T PF08553_consen 493 RNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVD---- 568 (794)
T ss_pred cceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceee----
Confidence 3444433 34578999999999999998877654 55544321 1223455666788999998854310000
Q ss_pred hHhhhhcCCceeEEEEeecccccccccCceeeEEEeeeecccccceeeeeeccceeEEEeecccceecccccccccccch
Q psy18231 291 NEALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSC 370 (540)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (540)
. .
T Consensus 569 ------------------------------------------------------------~------------------~ 570 (794)
T PF08553_consen 569 ------------------------------------------------------------S------------------Q 570 (794)
T ss_pred ------------------------------------------------------------c------------------c
Confidence 0 0
Q ss_pred hhhhhcccccEEEEEecC-CeeEeeeCCCeEEEEeCCCCceEEeee--CCceEEEEEecCCcEEEeecCCCeEEEEec
Q psy18231 371 FQALKEARDSITSVHVSD-HEILTASLDCRIRRYDIRTGNLVTDYV--GEPIVDACFTRDCQCILTCSTDECLRLFDK 445 (540)
Q Consensus 371 ~~~~~~~~~~v~~l~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~--~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~ 445 (540)
. ..-.......|++-+. ..+|+|+.+|.||+||--..+....+. |.+|..+..+.||+++++.+. ..+.+++.
T Consensus 571 ~-k~Y~~~~~Fs~~aTt~~G~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~-tyLlLi~t 646 (794)
T PF08553_consen 571 S-KQYSSKNNFSCFATTEDGYIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATCK-TYLLLIDT 646 (794)
T ss_pred c-cccccCCCceEEEecCCceEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEeec-ceEEEEEE
Confidence 0 0002234566777777 999999999999999954323233333 479999999999999887664 45666664
|
Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ]. |
| >COG3391 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.1 Score=50.19 Aligned_cols=149 Identities=11% Similarity=0.147 Sum_probs=101.0
Q ss_pred EEEEecC--CeeEeeeC---CCeEEEEeCCCCceEEeeeC-CceEEEEEecCCcEEEeec-CCCeEEEEeccccchhh--
Q psy18231 382 TSVHVSD--HEILTASL---DCRIRRYDIRTGNLVTDYVG-EPIVDACFTRDCQCILTCS-TDECLRLFDKATGELLE-- 452 (540)
Q Consensus 382 ~~l~~~~--~~l~~~~~---dg~i~iwd~~~~~~~~~~~~-~~i~~~~~sp~~~~l~~~~-~dg~i~i~d~~~~~~~~-- 452 (540)
..+++++ +.+.++.. ++.+.+.|..+++....... ..-..++++|+|+.++... .++.|.+.|.......+
T Consensus 119 ~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~ 198 (381)
T COG3391 119 VGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTPTGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGS 198 (381)
T ss_pred ceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCcceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccc
Confidence 4566666 34444433 78999999999988877553 2238999999999666655 78999999976655443
Q ss_pred ---hhccCcCCcceEEEEecCCCCeEEEeeCC---CcEEEEEecCCcceeEEEecccceeeeEEEEcCCCcEEEeec--C
Q psy18231 453 ---EYKGHKSGDFRIECCLDSKDSQIFCGSSD---GKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC--G 524 (540)
Q Consensus 453 ---~~~~~~~~v~~~~~~~s~~~~~l~s~s~d---g~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~--d 524 (540)
.......+ ..+ .++++|.++...... +.+...|..++............ ....+..+|+|+.+.+.. .
T Consensus 199 ~~~~~~~~~~P-~~i--~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~-~~~~v~~~p~g~~~yv~~~~~ 274 (381)
T COG3391 199 VGSLVGVGTGP-AGI--AVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGSG-APRGVAVDPAGKAAYVANSQG 274 (381)
T ss_pred cccccccCCCC-ceE--EECCCCCEEEEEeccCCCceEEEEeCCCceEEEeccccccC-CCCceeECCCCCEEEEEecCC
Confidence 12222222 233 789999976655443 58999998888776663211222 567789999999998885 4
Q ss_pred CeeEEEEccc
Q psy18231 525 NNVKLWTAEE 534 (540)
Q Consensus 525 ~~i~iw~~~~ 534 (540)
+.+.+-|..+
T Consensus 275 ~~V~vid~~~ 284 (381)
T COG3391 275 GTVSVIDGAT 284 (381)
T ss_pred CeEEEEeCCC
Confidence 6777666544
|
|
| >PHA02713 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.0096 Score=60.22 Aligned_cols=93 Identities=11% Similarity=0.184 Sum_probs=52.3
Q ss_pred eEEEEeCCCCceE--EeeeCCceEEEEEecCCcEEEeecCC------CeEEEEeccc-c--chhhhhccCcCCcceEEEE
Q psy18231 399 RIRRYDIRTGNLV--TDYVGEPIVDACFTRDCQCILTCSTD------ECLRLFDKAT-G--ELLEEYKGHKSGDFRIECC 467 (540)
Q Consensus 399 ~i~iwd~~~~~~~--~~~~~~~i~~~~~sp~~~~l~~~~~d------g~i~i~d~~~-~--~~~~~~~~~~~~v~~~~~~ 467 (540)
.+..||.++.+-. ..+........+..-++++.+.|+.+ ..+..||..+ . ..+..+.........
T Consensus 433 ~ve~YDP~td~W~~v~~m~~~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~---- 508 (557)
T PHA02713 433 KVIRYDTVNNIWETLPNFWTGTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHT---- 508 (557)
T ss_pred eEEEECCCCCeEeecCCCCcccccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCccccccee----
Confidence 4777887765432 22222222222233467777777754 2467899876 3 344444333222221
Q ss_pred ecCCCCeEEEeeCCC--cEEEEEecCCcce
Q psy18231 468 LDSKDSQIFCGSSDG--KIYKWQLVDSSQI 495 (540)
Q Consensus 468 ~s~~~~~l~s~s~dg--~i~iwd~~~~~~~ 495 (540)
..-+|+..++|+.|| .+..||..+.+-.
T Consensus 509 ~~~~~~iyv~Gg~~~~~~~e~yd~~~~~W~ 538 (557)
T PHA02713 509 ILHDNTIMMLHCYESYMLQDTFNVYTYEWN 538 (557)
T ss_pred EEECCEEEEEeeecceeehhhcCccccccc
Confidence 223678889999888 6778887766543
|
|
| >KOG2079|consensus | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.0037 Score=64.15 Aligned_cols=105 Identities=17% Similarity=0.194 Sum_probs=78.1
Q ss_pred CCCEEEEeeCCCcEEEEcCCCC-eeEEEeecCCcceeEEEEeeCCCeEEEeeCCCeEEEEEcCCCceeEeccccCCceeE
Q psy18231 175 DGSYCLTCGSDKKIKLWNPYRN-LLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPVRRWREHASKVTC 253 (540)
Q Consensus 175 dg~~lat~~~dg~i~iwd~~~~-~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~ 253 (540)
.+..++.|+..|.+-..|.... .+...=..-.++|++++|+.+|..++.|-.+|.|.+||...++.++.+..|..+...
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~ 177 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTG 177 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccce
Confidence 4457888888899988886543 111111224689999999999999999999999999999999999888877666554
Q ss_pred EE---ECCCCCEEEEecCCCcEEEEEecCCC
Q psy18231 254 VK---FNEDSSVVISGSQDNTVMMWDVKSRS 281 (540)
Q Consensus 254 ~~---~~~~~~~l~s~~~dg~i~iwd~~~~~ 281 (540)
+- +..++..++++...|. +|.+.-.+
T Consensus 178 vi~v~~t~~nS~llt~D~~Gs--f~~lv~nk 206 (1206)
T KOG2079|consen 178 VIFVGRTSQNSKLLTSDTGGS--FWKLVFNK 206 (1206)
T ss_pred EEEEEEeCCCcEEEEccCCCc--eEEEEech
Confidence 44 4445667888877775 77765444
|
|
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.0054 Score=59.13 Aligned_cols=133 Identities=20% Similarity=0.174 Sum_probs=78.0
Q ss_pred EEecC---CeeEeeeCCCe--EEEEeCCCCceEEeeeC-C-ceEEEEEecCCcEEEeecC-CC--eEEEEeccccchhhh
Q psy18231 384 VHVSD---HEILTASLDCR--IRRYDIRTGNLVTDYVG-E-PIVDACFTRDCQCILTCST-DE--CLRLFDKATGELLEE 453 (540)
Q Consensus 384 l~~~~---~~l~~~~~dg~--i~iwd~~~~~~~~~~~~-~-~i~~~~~sp~~~~l~~~~~-dg--~i~i~d~~~~~~~~~ 453 (540)
-+|+| ..+++...||. |.++|+.++...+ +.. . .-..-.|+|||+.++-.+. .| .|.++|...... ..
T Consensus 243 P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~~~-Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~-~r 320 (425)
T COG0823 243 PAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNLPR-LTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV-TR 320 (425)
T ss_pred ccCCCCCCEEEEEECCCCCccEEEEcCCCCccee-cccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce-eE
Confidence 35566 44555566665 5566777766444 432 2 2235689999998887654 34 466667665544 22
Q ss_pred hccCcCCcceEEEEecCCCCeEEEeeC-CCc--EEEEEecCCcceeEEEecccceeeeEEEEcCCCcEEEeec
Q psy18231 454 YKGHKSGDFRIECCLDSKDSQIFCGSS-DGK--IYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC 523 (540)
Q Consensus 454 ~~~~~~~v~~~~~~~s~~~~~l~s~s~-dg~--i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~ 523 (540)
+......-... .++|||++|+..+. +|. |.+.|+.++..+..+. +......-.|.|+++.+...+
T Consensus 321 iT~~~~~~~~p--~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~~~~lt---~~~~~e~ps~~~ng~~i~~~s 388 (425)
T COG0823 321 LTFSGGGNSNP--VWSPDGDKIVFESSSGGQWDIDKNDLASGGKIRILT---STYLNESPSWAPNGRMIMFSS 388 (425)
T ss_pred eeccCCCCcCc--cCCCCCCEEEEEeccCCceeeEEeccCCCCcEEEcc---ccccCCCCCcCCCCceEEEec
Confidence 22222211122 69999999887764 344 6677776666544443 334445566777776665544
|
|
| >KOG4441|consensus | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.021 Score=57.73 Aligned_cols=226 Identities=13% Similarity=0.115 Sum_probs=124.2
Q ss_pred CCCCCEEEEeeCCC------cEEEEcCCCCeeEEE--eecCCcceeEEEEeeCCCeEEEeeCC------CeEEEEEcCCC
Q psy18231 173 PVDGSYCLTCGSDK------KIKLWNPYRNLLLKT--YGGHAHEVNDATAACDSSQIASGASD------KSVILWEVTTG 238 (540)
Q Consensus 173 spdg~~lat~~~dg------~i~iwd~~~~~~~~~--~~~h~~~v~~l~~sp~~~~l~s~s~d------g~i~iwd~~~~ 238 (540)
+..+..++.||.++ .+..+|..++.-... +. +...-.+++.. ++...++|+.| .++..||..++
T Consensus 282 ~~~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~-~~r~~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~ 359 (571)
T KOG4441|consen 282 SVSGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMP-SPRCRVGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTN 359 (571)
T ss_pred CCCCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCC-cccccccEEEE-CCEEEEEccccCCCcccceEEEecCCCC
Confidence 34466777888773 688899887743332 22 22223444444 56788899988 35778888777
Q ss_pred ceeEe--ccccCCceeEEEECCCCCEEEEecCCCc-----EEEEEecCCCCCCcchhhhhHhhhhcCCceeEEEEeeccc
Q psy18231 239 QPVRR--WREHASKVTCVKFNEDSSVVISGSQDNT-----VMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKST 311 (540)
Q Consensus 239 ~~~~~--~~~h~~~v~~~~~~~~~~~l~s~~~dg~-----i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (540)
+-... +............ +|...++||.||. +-.||..+.+.....
T Consensus 360 ~W~~~a~M~~~R~~~~v~~l--~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va------------------------- 412 (571)
T KOG4441|consen 360 QWTPVAPMNTKRSDFGVAVL--DGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVA------------------------- 412 (571)
T ss_pred ceeccCCccCccccceeEEE--CCEEEEEeccccccccccEEEecCCCCcccccC-------------------------
Confidence 64332 2222222222222 5778889998864 666776665521111
Q ss_pred ccccccCceeeEEEeeeecccccceeeeeeccceeEEEeecccceecccccccccccchhhhhhcccccEEEEEecCCee
Q psy18231 312 KNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEARDSITSVHVSDHEI 391 (540)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~l 391 (540)
.+...........+.....
T Consensus 413 -------------------------------------------------------------~m~~~r~~~gv~~~~g~iY 431 (571)
T KOG4441|consen 413 -------------------------------------------------------------PMLTRRSGHGVAVLGGKLY 431 (571)
T ss_pred -------------------------------------------------------------CCCcceeeeEEEEECCEEE
Confidence 1111222333344455667
Q ss_pred EeeeCCC------eEEEEeCCCCceEEe--eeCCceEEEEEecCCcEEEeecCCCe-----EEEEeccccc--hhhhhcc
Q psy18231 392 LTASLDC------RIRRYDIRTGNLVTD--YVGEPIVDACFTRDCQCILTCSTDEC-----LRLFDKATGE--LLEEYKG 456 (540)
Q Consensus 392 ~~~~~dg------~i~iwd~~~~~~~~~--~~~~~i~~~~~sp~~~~l~~~~~dg~-----i~i~d~~~~~--~~~~~~~ 456 (540)
++|+.++ ++..||..+++-... +.......-.-.-++.+.+.|+.|+. |..||..+.+ .+..+..
T Consensus 432 i~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~ 511 (571)
T KOG4441|consen 432 IIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFGVAVLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTS 511 (571)
T ss_pred EEcCcCCCccccceEEEEcCCCCceeecCCcccccccceEEEECCEEEEECCccCCCccceEEEEcCCCCceeEcccCcc
Confidence 7777543 567888887654322 22111111122337788888887763 7778877654 3333333
Q ss_pred CcCCcceEEEEecCCCCeEEEeeCCC-----cEEEEEecCC
Q psy18231 457 HKSGDFRIECCLDSKDSQIFCGSSDG-----KIYKWQLVDS 492 (540)
Q Consensus 457 ~~~~v~~~~~~~s~~~~~l~s~s~dg-----~i~iwd~~~~ 492 (540)
....+.. ..-+++..++|+.|| +|..||..+.
T Consensus 512 ~rs~~g~----~~~~~~ly~vGG~~~~~~l~~ve~ydp~~d 548 (571)
T KOG4441|consen 512 PRSAVGV----VVLGGKLYAVGGFDGNNNLNTVECYDPETD 548 (571)
T ss_pred ccccccE----EEECCEEEEEecccCccccceeEEcCCCCC
Confidence 3332222 223567788888776 4666665443
|
|
| >COG3490 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.046 Score=47.81 Aligned_cols=56 Identities=13% Similarity=0.216 Sum_probs=44.7
Q ss_pred EeCCCCCEEEEeeC-----CCcEEEEcCCCC-eeEEEeecCCcceeEEEEeeCCCeEEEeeC
Q psy18231 171 RFPVDGSYCLTCGS-----DKKIKLWNPYRN-LLLKTYGGHAHEVNDATAACDSSQIASGAS 226 (540)
Q Consensus 171 ~~spdg~~lat~~~-----dg~i~iwd~~~~-~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~ 226 (540)
.|||||++|...-. .|.|-|||...+ ..+.++..|.-.-..+.|.+||+.++.+..
T Consensus 120 vfs~dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanG 181 (366)
T COG3490 120 VFSPDGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVANG 181 (366)
T ss_pred ccCCCCcEEEeecCCCCCCCceEEEEecccccceecccccCCcCcceeEEecCCcEEEEeCC
Confidence 59999999986533 478999998754 456677888888889999999999987753
|
|
| >KOG2395|consensus | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.0045 Score=58.49 Aligned_cols=138 Identities=15% Similarity=0.161 Sum_probs=94.8
Q ss_pred eEeeeCCCeEEEEeCCCCceEEeeeC-CceEEEEEecCCcE-------EEeecCCCeEEEEeccccc--hhhhhccCcC-
Q psy18231 391 ILTASLDCRIRRYDIRTGNLVTDYVG-EPIVDACFTRDCQC-------ILTCSTDECLRLFDKATGE--LLEEYKGHKS- 459 (540)
Q Consensus 391 l~~~~~dg~i~iwd~~~~~~~~~~~~-~~i~~~~~sp~~~~-------l~~~~~dg~i~i~d~~~~~--~~~~~~~~~~- 459 (540)
+..+.....++-.|++.|+.+.+..- ..|+-+.+.|+.+. -+.|-.|+.|.-||.+-.. .+..-++|.-
T Consensus 349 l~~~~~~~~l~klDIE~GKIVeEWk~~~di~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kqy~ 428 (644)
T KOG2395|consen 349 LMDGGEQDKLYKLDIERGKIVEEWKFEDDINMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQYS 428 (644)
T ss_pred eeCCCCcCcceeeecccceeeeEeeccCCcceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeeccccc
Confidence 44455667788899999999988874 45777788886542 2345568889999987322 1222222221
Q ss_pred ---CcceEEEEecCCCCeEEEeeCCCcEEEEEecCCcceeEEEecccceeeeEEEEcCCCcEEEeecCCeeEEEEcc
Q psy18231 460 ---GDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAE 533 (540)
Q Consensus 460 ---~v~~~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~d~~i~iw~~~ 533 (540)
...+. +-. ...++|+||.+|.|++||- .+..-.+.-. +-..+|..+..+.||++|+..++..+.+-++.
T Consensus 429 ~k~nFsc~--aTT-~sG~IvvgS~~GdIRLYdr-i~~~AKTAlP-gLG~~I~hVdvtadGKwil~Tc~tyLlLi~t~ 500 (644)
T KOG2395|consen 429 TKNNFSCF--ATT-ESGYIVVGSLKGDIRLYDR-IGRRAKTALP-GLGDAIKHVDVTADGKWILATCKTYLLLIDTL 500 (644)
T ss_pred ccccccee--eec-CCceEEEeecCCcEEeehh-hhhhhhhccc-ccCCceeeEEeeccCcEEEEecccEEEEEEEe
Confidence 11122 222 3448999999999999995 5555444332 77889999999999999999888888777764
|
|
| >PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.0091 Score=44.45 Aligned_cols=97 Identities=11% Similarity=0.050 Sum_probs=73.1
Q ss_pred ccccchhhhhhcccccceeeeecccccceeeeeecCeEEEEeCCCCCEEEEeeCCCcEEEEcCCCCeeEEEeecCCccee
Q psy18231 131 SLPRTITRILYELPKEWSIRVYRPLTVNRELFVLSGLMHTRFPVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVN 210 (540)
Q Consensus 131 s~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~v~~v~~spdg~~lat~~~dg~i~iwd~~~~~~~~~~~~h~~~v~ 210 (540)
..+.....-+..++.|..||+|+-.....+..-++.|+++.-...+ .++.+-.+|+|-+|+- ...+...+. +..+.
T Consensus 9 d~d~dg~~eLlvGs~D~~IRvf~~~e~~~Ei~e~~~v~~L~~~~~~-~F~Y~l~NGTVGvY~~--~~RlWRiKS-K~~~~ 84 (111)
T PF14783_consen 9 DFDGDGENELLVGSDDFEIRVFKGDEIVAEITETDKVTSLCSLGGG-RFAYALANGTVGVYDR--SQRLWRIKS-KNQVT 84 (111)
T ss_pred ecCCCCcceEEEecCCcEEEEEeCCcEEEEEecccceEEEEEcCCC-EEEEEecCCEEEEEeC--cceeeeecc-CCCeE
Confidence 3455556667788999999999998888888888999999888774 6788888999999984 444555553 44477
Q ss_pred EEEEeeCC----CeEEEeeCCCeEE
Q psy18231 211 DATAACDS----SQIASGASDKSVI 231 (540)
Q Consensus 211 ~l~~sp~~----~~l~s~s~dg~i~ 231 (540)
++.+..-. ..|++|-.+|.|-
T Consensus 85 ~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 85 SMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred EEEEEcCCCCCceEEEEEecCCeEE
Confidence 77776522 2588888888764
|
|
| >PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.034 Score=52.18 Aligned_cols=141 Identities=9% Similarity=0.132 Sum_probs=73.9
Q ss_pred CeEEEEeCCCCceEEeeeC-----CceEEEEEecCCcEEEeec--------------------CCCeEEEEeccccchhh
Q psy18231 398 CRIRRYDIRTGNLVTDYVG-----EPIVDACFTRDCQCILTCS--------------------TDECLRLFDKATGELLE 452 (540)
Q Consensus 398 g~i~iwd~~~~~~~~~~~~-----~~i~~~~~sp~~~~l~~~~--------------------~dg~i~i~d~~~~~~~~ 452 (540)
|.+.++|-++.+....... ..-+.+-|.|..+.++++. ...++.+||+.+.+.++
T Consensus 157 Ggf~llD~~tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q 236 (461)
T PF05694_consen 157 GGFVLLDGETFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQ 236 (461)
T ss_dssp -EEEEE-TTT--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEE
T ss_pred CcEEEEcCccccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEee
Confidence 4566777776666655543 2355667777777777653 24579999999999998
Q ss_pred hhccCcCC--cceEEEEecCCCCe-EEEeeCCCcEEEEEe-cCCc----ceeEEEeccc---------------ceeeeE
Q psy18231 453 EYKGHKSG--DFRIECCLDSKDSQ-IFCGSSDGKIYKWQL-VDSS----QISTLIHSVG---------------KAVVNS 509 (540)
Q Consensus 453 ~~~~~~~~--v~~~~~~~s~~~~~-l~s~s~dg~i~iwd~-~~~~----~~~~~~~~~~---------------~~~v~~ 509 (540)
++.--... ...+++...|+..+ ++.+.-..+|..|-- ..++ .+..+..... ..-|+.
T Consensus 237 ~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitD 316 (461)
T PF05694_consen 237 TIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITD 316 (461)
T ss_dssp EEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------
T ss_pred EEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEe
Confidence 88754332 34566677777776 444444555555543 3332 2222221000 234799
Q ss_pred EEEcCCCcEEEeec--CCeeEEEEcccccCC
Q psy18231 510 LCSHPTRKHIMSAC--GNNVKLWTAEEDYGQ 538 (540)
Q Consensus 510 l~~s~d~~~l~s~~--d~~i~iw~~~~~~~~ 538 (540)
+..|.|.++|..+. +|.|+.||+...+.|
T Consensus 317 I~iSlDDrfLYvs~W~~GdvrqYDISDP~~P 347 (461)
T PF05694_consen 317 ILISLDDRFLYVSNWLHGDVRQYDISDPFNP 347 (461)
T ss_dssp EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-
T ss_pred EEEccCCCEEEEEcccCCcEEEEecCCCCCC
Confidence 99999999999988 999999999887654
|
The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A. |
| >KOG4441|consensus | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.041 Score=55.61 Aligned_cols=146 Identities=12% Similarity=0.112 Sum_probs=78.2
Q ss_pred EEecCCeeEeeeCCCe-----EEEEeCCCCceE--EeeeCCceEEEEEecCCcEEEeecCCC------eEEEEeccccc-
Q psy18231 384 VHVSDHEILTASLDCR-----IRRYDIRTGNLV--TDYVGEPIVDACFTRDCQCILTCSTDE------CLRLFDKATGE- 449 (540)
Q Consensus 384 l~~~~~~l~~~~~dg~-----i~iwd~~~~~~~--~~~~~~~i~~~~~sp~~~~l~~~~~dg------~i~i~d~~~~~- 449 (540)
......+.++|+.||. +..||..+.+-- ..+....-....-.-+|++.++|+.++ ++..||..+.+
T Consensus 377 ~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W 456 (571)
T KOG4441|consen 377 AVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTW 456 (571)
T ss_pred EEECCEEEEEeccccccccccEEEecCCCCcccccCCCCcceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCce
Confidence 3444467778888753 677887765432 212111111222233788888888654 46788877653
Q ss_pred -hhhhhccCcCCcceEEEEecCCCCeEEEeeCCCc-----EEEEEecCCcceeEEEecccceeeeEEEEcCCCcEEEeec
Q psy18231 450 -LLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGK-----IYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC 523 (540)
Q Consensus 450 -~~~~~~~~~~~v~~~~~~~s~~~~~l~s~s~dg~-----i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~ 523 (540)
.+..+........ +-.-++...+.|+.|+. |..||..+.+-...-........+..+.+ +++..+.|+
T Consensus 457 ~~~~~M~~~R~~~g----~a~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~~g~~~~--~~~ly~vGG 530 (571)
T KOG4441|consen 457 TLIAPMNTRRSGFG----VAVLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPRSAVGVVVL--GGKLYAVGG 530 (571)
T ss_pred eecCCcccccccce----EEEECCEEEEECCccCCCccceEEEEcCCCCceeEcccCccccccccEEEE--CCEEEEEec
Confidence 2333322211111 12246778888887773 77788766544332211122233333332 466777777
Q ss_pred -CC-----eeEEEEcccc
Q psy18231 524 -GN-----NVKLWTAEED 535 (540)
Q Consensus 524 -d~-----~i~iw~~~~~ 535 (540)
|| +|..||..++
T Consensus 531 ~~~~~~l~~ve~ydp~~d 548 (571)
T KOG4441|consen 531 FDGNNNLNTVECYDPETD 548 (571)
T ss_pred ccCccccceeEEcCCCCC
Confidence 76 5777776543
|
|
| >KOG1897|consensus | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.36 Score=49.95 Aligned_cols=149 Identities=12% Similarity=0.043 Sum_probs=97.9
Q ss_pred EEEEEecC---CeeEeeeC----------CCeEEEEeCCCCceEEeeeCC----ceEEEEEecCCcEEEeecCCCeEEEE
Q psy18231 381 ITSVHVSD---HEILTASL----------DCRIRRYDIRTGNLVTDYVGE----PIVDACFTRDCQCILTCSTDECLRLF 443 (540)
Q Consensus 381 v~~l~~~~---~~l~~~~~----------dg~i~iwd~~~~~~~~~~~~~----~i~~~~~sp~~~~l~~~~~dg~i~i~ 443 (540)
+.+..|.. .++++|+. .|.|.+|.....+.+...+.. .+.++.. -+|+++|. -+..|++|
T Consensus 777 i~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~Gav~aL~~-fngkllA~--In~~vrLy 853 (1096)
T KOG1897|consen 777 IISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKGAVYALVE-FNGKLLAG--INQSVRLY 853 (1096)
T ss_pred eeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeeccceeehhh-hCCeEEEe--cCcEEEEE
Confidence 34444544 56676653 477888877774444444432 3333321 16777764 45689999
Q ss_pred eccccchhhhhccCcCCcceEEEEecCCCCeEEEeeCCCcEEEEEecCCc--ceeEEEecccceeeeEEEEcCCCcEEEe
Q psy18231 444 DKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSS--QISTLIHSVGKAVVNSLCSHPTRKHIMS 521 (540)
Q Consensus 444 d~~~~~~~~~~~~~~~~v~~~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~--~~~~~~~~~~~~~v~~l~~s~d~~~l~s 521 (540)
+..+.+.++.-..|..++..+ ...-.|..++.|.--+.+.+...+..+ .....+ .-+....+++.+-.+..++.+
T Consensus 854 e~t~~~eLr~e~~~~~~~~aL--~l~v~gdeI~VgDlm~Sitll~y~~~eg~f~evAr-D~~p~Wmtaveil~~d~ylga 930 (1096)
T KOG1897|consen 854 EWTTERELRIECNISNPIIAL--DLQVKGDEIAVGDLMRSITLLQYKGDEGNFEEVAR-DYNPNWMTAVEILDDDTYLGA 930 (1096)
T ss_pred EccccceehhhhcccCCeEEE--EEEecCcEEEEeeccceEEEEEEeccCCceEEeeh-hhCccceeeEEEecCceEEee
Confidence 999988888777788887777 556678899999988877766554433 433333 357788899988876666655
Q ss_pred ecCCeeEEEEcccc
Q psy18231 522 ACGNNVKLWTAEED 535 (540)
Q Consensus 522 ~~d~~i~iw~~~~~ 535 (540)
-.+|.+.+-..++.
T Consensus 931 e~~gNlf~v~~d~~ 944 (1096)
T KOG1897|consen 931 ENSGNLFTVRKDSD 944 (1096)
T ss_pred cccccEEEEEecCC
Confidence 54888777766544
|
|
| >PRK13616 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.018 Score=58.13 Aligned_cols=103 Identities=8% Similarity=0.078 Sum_probs=65.1
Q ss_pred cCeEEEEeCCCCCEEEEee------CCC--cEEEEcCCCCeeEEEeecCCcceeEEEEeeCCCeEEEeeCC---------
Q psy18231 165 SGLMHTRFPVDGSYCLTCG------SDK--KIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASD--------- 227 (540)
Q Consensus 165 ~~v~~v~~spdg~~lat~~------~dg--~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~d--------- 227 (540)
..+.+.++||||+.+|..- .|. .|.+++. .+.......+ ...+.-.|+|||+.|++.+..
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~-gg~~~~lt~g--~~~t~PsWspDG~~lw~v~dg~~~~~v~~~ 426 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPL-GGVAVQVLEG--HSLTRPSWSLDADAVWVVVDGNTVVRVIRD 426 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeC-CCcceeeecC--CCCCCceECCCCCceEEEecCcceEEEecc
Confidence 4688999999999987554 233 4555554 2222222232 247888999998888776532
Q ss_pred ---CeEEEEEcCCCceeEeccccCCceeEEEECCCCCEEEEecCCCcEEE
Q psy18231 228 ---KSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMM 274 (540)
Q Consensus 228 ---g~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~i 274 (540)
+.+.+.++..++... ...+.|..+.|+|||..++... +|.|.+
T Consensus 427 ~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~V 472 (591)
T PRK13616 427 PATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII-GGKVYL 472 (591)
T ss_pred CCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE-CCEEEE
Confidence 233333443333222 2356799999999999888765 466665
|
|
| >PRK07259 dihydroorotate dehydrogenase 1B; Reviewed | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.0021 Score=59.51 Aligned_cols=97 Identities=16% Similarity=0.246 Sum_probs=67.4
Q ss_pred ceecCCceEEec-cCCCCCHHHHHHHHHcCCCEEEeeeeecccccccchhh----------------------cccc-c-
Q psy18231 11 STLLKNLKHCDS-TLWTSKLNFRQLVRSHNVDLCFTPMIIADSFIKSSKAR----------------------NNEF-S- 65 (540)
Q Consensus 11 ~~~~~~~~~~ap-~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------~~~~-~- 65 (540)
++.+++++++|. +.+.+. -+.+.+.+.|++.+.+.-++...-..+.+.+ ...+ +
T Consensus 8 G~~~~nPv~~aag~~~~~~-~~~~~~~~~g~g~v~~kti~~~~~~g~~~pr~~~~~~~~~n~~g~~~~g~~~~~~~~~~~ 86 (301)
T PRK07259 8 GLKLKNPVMPASGTFGFGG-EYARFYDLNGLGAIVTKSTTLEPREGNPTPRIAETPGGMLNAIGLQNPGVDAFIEEELPW 86 (301)
T ss_pred CEECCCCcEECCcCCCCCH-HHHHHhhhcCCcEEEeCCCCCCCCCCCCCCcEEecCCceeecCCCCCcCHHHHHHHHHHH
Confidence 577899999986 555555 4444556778888888777654322111100 0001 0
Q ss_pred cCCCCCCEEEEEecCChhHHHHHHHHhcC-C-CCeEeeccCCCce
Q psy18231 66 TSPEDTPLVVQFASNNHDDFVRATQYVAP-H-CNGVDLNCGCPQR 108 (540)
Q Consensus 66 ~~~~~~~~~~q~~~~~~~~~~~~~~~~~~-~-~~~id~~~gc~~~ 108 (540)
..+.+.|+++|+.|+++++++++++.+.+ + .|.|++|++||..
T Consensus 87 ~~~~~~p~i~si~g~~~~~~~~~a~~~~~aG~~D~iElN~~cP~~ 131 (301)
T PRK07259 87 LEEFDTPIIANVAGSTEEEYAEVAEKLSKAPNVDAIELNISCPNV 131 (301)
T ss_pred HhccCCcEEEEeccCCHHHHHHHHHHHhccCCcCEEEEECCCCCC
Confidence 11236899999999999999999998887 5 8999999999974
|
|
| >PHA02713 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.015 Score=58.88 Aligned_cols=66 Identities=17% Similarity=0.137 Sum_probs=38.2
Q ss_pred EecCCeeEeeeCC------CeEEEEeCCC-Cc--eEEeeeCCceEEEEEecCCcEEEeecCCC--eEEEEeccccch
Q psy18231 385 HVSDHEILTASLD------CRIRRYDIRT-GN--LVTDYVGEPIVDACFTRDCQCILTCSTDE--CLRLFDKATGEL 450 (540)
Q Consensus 385 ~~~~~~l~~~~~d------g~i~iwd~~~-~~--~~~~~~~~~i~~~~~sp~~~~l~~~~~dg--~i~i~d~~~~~~ 450 (540)
.+...+.+.|+.+ ..+..||.++ .+ .+..+.......-...-++++.++|+.++ .+..||..+.+=
T Consensus 461 ~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~~~~~iyv~Gg~~~~~~~e~yd~~~~~W 537 (557)
T PHA02713 461 SHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTILHDNTIMMLHCYESYMLQDTFNVYTYEW 537 (557)
T ss_pred EECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeEEECCEEEEEeeecceeehhhcCcccccc
Confidence 3444566666653 2467899887 43 22333222222222223788999999888 677777776653
|
|
| >cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.0025 Score=58.81 Aligned_cols=98 Identities=12% Similarity=0.175 Sum_probs=73.4
Q ss_pred ceecCCceEEeccCCCCCHHHHHHHHHcCCCEEEeeeeecccccccchhhccccc-------------------------
Q psy18231 11 STLLKNLKHCDSTLWTSKLNFRQLVRSHNVDLCFTPMIIADSFIKSSKARNNEFS------------------------- 65 (540)
Q Consensus 11 ~~~~~~~~~~ap~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------- 65 (540)
++.+++++++|-...-++.-+-+.+.+.|++.+.+.-++......+...+...++
T Consensus 5 G~~~~nPv~~aag~~~~~~~~~~~~~~~g~g~vv~kti~~~~~~~n~~pr~~~~~~~~~~~~~~~~~~n~~g~~~~g~~~ 84 (289)
T cd02810 5 GLKLKNPFGVAAGPLLKTGELIARAAAAGFGAVVYKTVTLHPRPGNPLPRVARLPPEGESYPEQLGILNSFGLPNLGLDV 84 (289)
T ss_pred CEECCCCCEeCCCCCCCCHHHHHHHHHcCCCeEEeCcccCCCCCCCCCCCEEEeccccccCcccceEeecCCCCCcCHHH
Confidence 5778999999988777787777777788888888888876644322211111111
Q ss_pred -------cCC--CCCCEEEEEecCChhHHHHHHHHhcC-CCCeEeeccCCCce
Q psy18231 66 -------TSP--EDTPLVVQFASNNHDDFVRATQYVAP-HCNGVDLNCGCPQR 108 (540)
Q Consensus 66 -------~~~--~~~~~~~q~~~~~~~~~~~~~~~~~~-~~~~id~~~gc~~~ 108 (540)
... .+.|+++|+.++++++++++++.+.+ +++.|++|++||..
T Consensus 85 ~~~~i~~~~~~~~~~pvi~si~g~~~~~~~~~a~~~~~~G~d~ielN~~cP~~ 137 (289)
T cd02810 85 WLQDIAKAKKEFPGQPLIASVGGSSKEDYVELARKIERAGAKALELNLSCPNV 137 (289)
T ss_pred HHHHHHHHHhccCCCeEEEEeccCCHHHHHHHHHHHHHhCCCEEEEEcCCCCC
Confidence 012 47899999999999999999998777 69999999999974
|
DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of |
| >PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.31 Score=47.71 Aligned_cols=135 Identities=7% Similarity=-0.021 Sum_probs=66.1
Q ss_pred CeEEEEeCCCC-----ceEEeeeC-CceEEEEEecCCcEEEeec---CCCeEEEEeccccch---hhhhccCcCCcceEE
Q psy18231 398 CRIRRYDIRTG-----NLVTDYVG-EPIVDACFTRDCQCILTCS---TDECLRLFDKATGEL---LEEYKGHKSGDFRIE 465 (540)
Q Consensus 398 g~i~iwd~~~~-----~~~~~~~~-~~i~~~~~sp~~~~l~~~~---~dg~i~i~d~~~~~~---~~~~~~~~~~v~~~~ 465 (540)
..+.+.|+..+ ........ ..+....-+.++.+++... .++.|.-.++.+... ...+-.+...+...
T Consensus 252 s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v~~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~- 330 (414)
T PF02897_consen 252 SEVYLLDLDDGGSPDAKPKLLSPREDGVEYYVDHHGDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLE- 330 (414)
T ss_dssp EEEEEEECCCTTTSS-SEEEEEESSSS-EEEEEEETTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEE-
T ss_pred CeEEEEeccccCCCcCCcEEEeCCCCceEEEEEccCCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEE-
Confidence 45788888764 22222222 3333333333444544433 246677777776653 12344444433323
Q ss_pred EEecCCCCeEE-EeeCCC--cEEEEEecCCcceeEEEecccceeeeEEEEcCCCcEEE--eec---CCeeEEEEcccc
Q psy18231 466 CCLDSKDSQIF-CGSSDG--KIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIM--SAC---GNNVKLWTAEED 535 (540)
Q Consensus 466 ~~~s~~~~~l~-s~s~dg--~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~--s~~---d~~i~iw~~~~~ 535 (540)
.+...+.+|+ ....++ .|+++++..+.....+.. ...+.|..+...+++..+. ..+ -+++..||+.++
T Consensus 331 -~~~~~~~~Lvl~~~~~~~~~l~v~~~~~~~~~~~~~~-p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~ 406 (414)
T PF02897_consen 331 -DVSLFKDYLVLSYRENGSSRLRVYDLDDGKESREIPL-PEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATG 406 (414)
T ss_dssp -EEEEETTEEEEEEEETTEEEEEEEETT-TEEEEEEES-SSSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTT
T ss_pred -EEEEECCEEEEEEEECCccEEEEEECCCCcEEeeecC-CcceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCC
Confidence 2333344544 444444 488888774555555553 2345566666666554433 222 457888887765
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A .... |
| >COG3386 Gluconolactonase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.17 Score=46.52 Aligned_cols=140 Identities=16% Similarity=0.198 Sum_probs=87.2
Q ss_pred hhhhhcccccceeeeeccccc-ceeeeeecCeEEEEeCCCCCEEEEeeCCCcEEEEcCCCCeeEEEee----c-CCccee
Q psy18231 137 TRILYELPKEWSIRVYRPLTV-NRELFVLSGLMHTRFPVDGSYCLTCGSDKKIKLWNPYRNLLLKTYG----G-HAHEVN 210 (540)
Q Consensus 137 ~~~~~~~~~~~~i~~~~~~~~-~~~~~h~~~v~~v~~spdg~~lat~~~dg~i~iwd~~~~~~~~~~~----~-h~~~v~ 210 (540)
..++|.--....|.-|++.+. .+...+.+.+.++..-.++..|+++. .-+.+++.+++..+..+. + .....+
T Consensus 37 ~~L~w~DI~~~~i~r~~~~~g~~~~~~~p~~~~~~~~~d~~g~Lv~~~--~g~~~~~~~~~~~~t~~~~~~~~~~~~r~N 114 (307)
T COG3386 37 GALLWVDILGGRIHRLDPETGKKRVFPSPGGFSSGALIDAGGRLIACE--HGVRLLDPDTGGKITLLAEPEDGLPLNRPN 114 (307)
T ss_pred CEEEEEeCCCCeEEEecCCcCceEEEECCCCcccceeecCCCeEEEEc--cccEEEeccCCceeEEeccccCCCCcCCCC
Confidence 334555555666777777654 34444556666666555555666653 455667776665533331 1 124556
Q ss_pred EEEEeeCCCeEEEeeC-----C----CeEEEEEcC-CCceeEeccccCCceeEEEECCCCCEEEEecCC-CcEEEEEec
Q psy18231 211 DATAACDSSQIASGAS-----D----KSVILWEVT-TGQPVRRWREHASKVTCVKFNEDSSVVISGSQD-NTVMMWDVK 278 (540)
Q Consensus 211 ~l~~sp~~~~l~s~s~-----d----g~i~iwd~~-~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d-g~i~iwd~~ 278 (540)
.+...|+|.+.++... . ..=.||-+. .+..+..+..+-..-+.++||||++.|+.+... +.|.-|++.
T Consensus 115 D~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d 193 (307)
T COG3386 115 DGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLD 193 (307)
T ss_pred ceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEecC
Confidence 7888999987776554 1 122455555 566666666666677899999999887776553 677777765
|
|
| >cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.0011 Score=59.03 Aligned_cols=85 Identities=11% Similarity=0.039 Sum_probs=58.0
Q ss_pred CCceEEeccCCCCCHHHHHHHHHcCC-CEEEeeeeecccccccchhhccccccCCCCCCEEEEEecCCh-hHHHHHHHHh
Q psy18231 15 KNLKHCDSTLWTSKLNFRQLVRSHNV-DLCFTPMIIADSFIKSSKARNNEFSTSPEDTPLVVQFASNNH-DDFVRATQYV 92 (540)
Q Consensus 15 ~~~~~~ap~~~~~~~~~r~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~-~~~~~~~~~~ 92 (540)
+.++++|||.|+|+..|+..++++|+ ++..++|++..++.+.-+...... +.|+.+++..+++ +...+.++..
T Consensus 2 ~~pi~~a~m~g~~~~~~~~~~~~~G~ig~i~~~~~~~~~~~~~~~~i~~~~-----~~~~~v~~i~~~~~~~~~~~~~~~ 76 (236)
T cd04730 2 RYPIIQAPMAGVSTPELAAAVSNAGGLGFIGAGYLTPEALRAEIRKIRALT-----DKPFGVNLLVPSSNPDFEALLEVA 76 (236)
T ss_pred CCCEECCCCCCCCCHHHHHHHHhCCCccccCCCCCCHHHHHHHHHHHHHhc-----CCCeEEeEecCCCCcCHHHHHHHH
Confidence 46899999999999999999999986 887788877666544332222111 4577889998874 2233333332
Q ss_pred -cCCCCeEeeccC
Q psy18231 93 -APHCNGVDLNCG 104 (540)
Q Consensus 93 -~~~~~~id~~~g 104 (540)
+.+.+.|.++.+
T Consensus 77 ~~~g~d~v~l~~~ 89 (236)
T cd04730 77 LEEGVPVVSFSFG 89 (236)
T ss_pred HhCCCCEEEEcCC
Confidence 336788877665
|
NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. |
| >PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.32 Score=45.78 Aligned_cols=104 Identities=11% Similarity=0.108 Sum_probs=58.5
Q ss_pred CeEEEEeCCCCCEEEEeeCCCcEEEEcCCCCee---EEEe----ecCCcceeEEEEeeC----CCeEEEeeCC-------
Q psy18231 166 GLMHTRFPVDGSYCLTCGSDKKIKLWNPYRNLL---LKTY----GGHAHEVNDATAACD----SSQIASGASD------- 227 (540)
Q Consensus 166 ~v~~v~~spdg~~lat~~~dg~i~iwd~~~~~~---~~~~----~~h~~~v~~l~~sp~----~~~l~s~s~d------- 227 (540)
.-..|+|.|||+.+++ ...|.|++++ ..+.. +..+ .........++++|+ +.+.++.+..
T Consensus 3 ~P~~~a~~pdG~l~v~-e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~ 80 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLVA-ERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDN 80 (331)
T ss_dssp SEEEEEEETTSCEEEE-ETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSE
T ss_pred CceEEEEeCCCcEEEE-eCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCc
Confidence 3578999999987665 6699999999 44443 3333 123467789999994 3333333321
Q ss_pred -CeEEEEEcCCC-------cee-Eeccc---cCCceeEEEECCCCCEEEEecCCCc
Q psy18231 228 -KSVILWEVTTG-------QPV-RRWRE---HASKVTCVKFNEDSSVVISGSQDNT 271 (540)
Q Consensus 228 -g~i~iwd~~~~-------~~~-~~~~~---h~~~v~~~~~~~~~~~l~s~~~dg~ 271 (540)
..|.-|....+ +.+ ..+.. ....-..|.|.|||.+.++.+..+.
T Consensus 81 ~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~~ 136 (331)
T PF07995_consen 81 DNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGGN 136 (331)
T ss_dssp EEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TTT
T ss_pred ceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCCC
Confidence 23444544433 111 11111 2344567999999977777666554
|
The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B .... |
| >COG3204 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.17 Score=44.78 Aligned_cols=167 Identities=11% Similarity=0.111 Sum_probs=109.4
Q ss_pred eecCCcceeEEEEeeCCCeEEEeeCCCeEEEEEcCCCceeEeccc-cCCceeEEEECCCCCEEEEecCCCcEEEEEecCC
Q psy18231 202 YGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPVRRWRE-HASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSR 280 (540)
Q Consensus 202 ~~~h~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~-h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~ 280 (540)
+.+-...+.++.|+|+.+.|++......-.||=..+|+.+.++.- .-+..-.+.+..++++.++--.++.+.++.+...
T Consensus 81 i~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~ 160 (316)
T COG3204 81 ILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDAD 160 (316)
T ss_pred cccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCC
Confidence 345566699999999999999999888888887788999887652 1233456788888888888888889998887765
Q ss_pred CCCCcchhhhhHhhhhcCCceeEEEEeecccccccccCceeeEEEeeeecccccceeeeeeccceeEEEeecccceeccc
Q psy18231 281 SHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGD 360 (540)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (540)
...... ....+
T Consensus 161 t~~~~~--------------------------------------------------------~~~~i------------- 171 (316)
T COG3204 161 TTVISA--------------------------------------------------------KVQKI------------- 171 (316)
T ss_pred ccEEec--------------------------------------------------------cceEE-------------
Confidence 310000 00000
Q ss_pred ccccccccchhhhhhcccccEEEEEecC--CeeEeeeCCCeEEEEeCCCCceEEee------------eCCceEEEEEec
Q psy18231 361 VTPISIHNSCFQALKEARDSITSVHVSD--HEILTASLDCRIRRYDIRTGNLVTDY------------VGEPIVDACFTR 426 (540)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~v~~l~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~------------~~~~i~~~~~sp 426 (540)
.+......+.....++|++ +.|+.+-+-.-+.||........... .-..+.++.|.+
T Consensus 172 ---------~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~~~ 242 (316)
T COG3204 172 ---------PLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEFNA 242 (316)
T ss_pred ---------eccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeeccccceecC
Confidence 0111112255667888988 77777777777777766533311111 113577788886
Q ss_pred -CCcEEEeecCCCeEEEEecc
Q psy18231 427 -DCQCILTCSTDECLRLFDKA 446 (540)
Q Consensus 427 -~~~~l~~~~~dg~i~i~d~~ 446 (540)
.+.+|+.+.+++.+.-.|..
T Consensus 243 ~~~~LLVLS~ESr~l~Evd~~ 263 (316)
T COG3204 243 ITNSLLVLSDESRRLLEVDLS 263 (316)
T ss_pred CCCcEEEEecCCceEEEEecC
Confidence 56677777777777777754
|
|
| >KOG2444|consensus | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.0028 Score=53.27 Aligned_cols=106 Identities=13% Similarity=0.098 Sum_probs=70.6
Q ss_pred CCEEEEeeCCCcEEEEcCCCCeeEE-EeecCCcceeE-EEEeeCCCeEEEeeCCCeEEEEEcCCCceeEeccccC-Ccee
Q psy18231 176 GSYCLTCGSDKKIKLWNPYRNLLLK-TYGGHAHEVND-ATAACDSSQIASGASDKSVILWEVTTGQPVRRWREHA-SKVT 252 (540)
Q Consensus 176 g~~lat~~~dg~i~iwd~~~~~~~~-~~~~h~~~v~~-l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~-~~v~ 252 (540)
+..++.|+.+|.|.+|++....... .+..-...|.+ +.--.++.+..+++.||.|+.|++.-++.+.....|. .++.
T Consensus 70 ~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e 149 (238)
T KOG2444|consen 70 SAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGE 149 (238)
T ss_pred CceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceeeeeccccCCCcc
Confidence 4568899999999999976221111 11111222222 2223356678899999999999999888887777777 5555
Q ss_pred EEEECCCCCEEEEe--cCCCcEEEEEecCCC
Q psy18231 253 CVKFNEDSSVVISG--SQDNTVMMWDVKSRS 281 (540)
Q Consensus 253 ~~~~~~~~~~l~s~--~~dg~i~iwd~~~~~ 281 (540)
....+..+..++++ |.|..++.|++....
T Consensus 150 ~~ivv~sd~~i~~a~~S~d~~~k~W~ve~~~ 180 (238)
T KOG2444|consen 150 ELIVVGSDEFLKIADTSHDRVLKKWNVEKIK 180 (238)
T ss_pred eeEEecCCceEEeeccccchhhhhcchhhhh
Confidence 55555566667776 777777888776544
|
|
| >PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.21 Score=47.12 Aligned_cols=127 Identities=12% Similarity=0.140 Sum_probs=61.3
Q ss_pred eeCCCeEEEEeCCCCceEEeeeCC----ceEEEEEec--CCcEEEee-cCCCeEEEEec-cccc----------------
Q psy18231 394 ASLDCRIRRYDIRTGNLVTDYVGE----PIVDACFTR--DCQCILTC-STDECLRLFDK-ATGE---------------- 449 (540)
Q Consensus 394 ~~~dg~i~iwd~~~~~~~~~~~~~----~i~~~~~sp--~~~~l~~~-~~dg~i~i~d~-~~~~---------------- 449 (540)
+-...++.+||+.+.+.++++.-. -...+.|.. +..+-.++ .-..+|..|-- ..++
T Consensus 218 ~~yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~ 297 (461)
T PF05694_consen 218 GKYGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEG 297 (461)
T ss_dssp H-S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--S
T ss_pred ccccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCc
Confidence 334578999999999999988732 244555654 34433332 23444444422 2221
Q ss_pred -----hhhhhccCcCCcceEEEEecCCCCeEEEee-CCCcEEEEEecCCc---ceeEEEecc--------------ccee
Q psy18231 450 -----LLEEYKGHKSGDFRIECCLDSKDSQIFCGS-SDGKIYKWQLVDSS---QISTLIHSV--------------GKAV 506 (540)
Q Consensus 450 -----~~~~~~~~~~~v~~~~~~~s~~~~~l~s~s-~dg~i~iwd~~~~~---~~~~~~~~~--------------~~~~ 506 (540)
.++.+..-..-++.+ ..|.|+++|.... .+|.|+.||+.+.. ++.++...+ -.+.
T Consensus 298 ~~lp~ml~~~~~~P~LitDI--~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~Gg 375 (461)
T PF05694_consen 298 WILPEMLKPFGAVPPLITDI--LISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGG 375 (461)
T ss_dssp S---GGGGGG-EE------E--EE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S-
T ss_pred ccccccccccccCCCceEeE--EEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCC
Confidence 111222223345555 7899999977655 78999999998753 333333211 1123
Q ss_pred eeEEEEcCCCcEEEee
Q psy18231 507 VNSLCSHPTRKHIMSA 522 (540)
Q Consensus 507 v~~l~~s~d~~~l~s~ 522 (540)
.+-+..|.||+.|...
T Consensus 376 PqMvqlS~DGkRlYvT 391 (461)
T PF05694_consen 376 PQMVQLSLDGKRLYVT 391 (461)
T ss_dssp ---EEE-TTSSEEEEE
T ss_pred CCeEEEccCCeEEEEE
Confidence 5778899999888754
|
The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A. |
| >TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.12 Score=53.86 Aligned_cols=105 Identities=13% Similarity=0.182 Sum_probs=67.5
Q ss_pred CCEEEEeeCCCcEEEEcCCCCeeEEEeecCCcc--------eeEEEEee----------------CCCeEEEeeCCCeEE
Q psy18231 176 GSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHE--------VNDATAAC----------------DSSQIASGASDKSVI 231 (540)
Q Consensus 176 g~~lat~~~dg~i~iwd~~~~~~~~~~~~h~~~--------v~~l~~sp----------------~~~~l~s~s~dg~i~ 231 (540)
+..|..++.++.|.-.|..+|+.+.++...... ...+++.. .+..++.++.|+.+.
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li 273 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI 273 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence 456777777889999999999988887532211 11233321 344788899999999
Q ss_pred EEEcCCCceeEeccccCCcee-------------EEEECC--CCCEEEEecC----------CCcEEEEEecCCC
Q psy18231 232 LWEVTTGQPVRRWREHASKVT-------------CVKFNE--DSSVVISGSQ----------DNTVMMWDVKSRS 281 (540)
Q Consensus 232 iwd~~~~~~~~~~~~h~~~v~-------------~~~~~~--~~~~l~s~~~----------dg~i~iwd~~~~~ 281 (540)
-.|.++|+.+..+.. .+.|. .+.-.| .+..++.|+. +|.|+-+|.++++
T Consensus 274 ALDA~TGk~~W~fg~-~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGk 347 (764)
T TIGR03074 274 ALDADTGKLCEDFGN-NGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGA 347 (764)
T ss_pred EEECCCCCEEEEecC-CCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCc
Confidence 999999998876532 22221 111122 2345555542 5788888888887
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases. |
| >COG3490 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.037 Score=48.39 Aligned_cols=140 Identities=10% Similarity=0.131 Sum_probs=93.1
Q ss_pred EEEEecC---CeeEeeeCCCe-EEEEeCCCCceEEeeeC----CceEEEEEecCCcEEEeecCC-----CeEEEEecccc
Q psy18231 382 TSVHVSD---HEILTASLDCR-IRRYDIRTGNLVTDYVG----EPIVDACFTRDCQCILTCSTD-----ECLRLFDKATG 448 (540)
Q Consensus 382 ~~l~~~~---~~l~~~~~dg~-i~iwd~~~~~~~~~~~~----~~i~~~~~sp~~~~l~~~~~d-----g~i~i~d~~~~ 448 (540)
..++++| .-++.+-.-|+ ..++|....+....+.. |.--.-.|||||.+|+..-.| |.|-|||.+.+
T Consensus 71 Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~~ 150 (366)
T COG3490 71 HGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDAREG 150 (366)
T ss_pred CCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEecccc
Confidence 3566666 44555555454 56889988877666543 334445799999999886543 78999998754
Q ss_pred -chhhhhccCcCCcceEEEEecCCCCeEEEeeC------------------CCcEEEEEecCCcceeEEEec--ccceee
Q psy18231 449 -ELLEEYKGHKSGDFRIECCLDSKDSQIFCGSS------------------DGKIYKWQLVDSSQISTLIHS--VGKAVV 507 (540)
Q Consensus 449 -~~~~~~~~~~~~v~~~~~~~s~~~~~l~s~s~------------------dg~i~iwd~~~~~~~~~~~~~--~~~~~v 507 (540)
+.+.++..|.-.-..+ .+.+||+.++.+.. .-.+.+.|..+|..+.+...+ .+.-+|
T Consensus 151 fqrvgE~~t~GiGpHev--~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~lSi 228 (366)
T COG3490 151 FQRVGEFSTHGIGPHEV--TLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQLSI 228 (366)
T ss_pred cceecccccCCcCccee--EEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCchhhhhcce
Confidence 5566777765444445 78899999887642 113445555566665544432 456678
Q ss_pred eEEEEcCCCcEEEeec
Q psy18231 508 NSLCSHPTRKHIMSAC 523 (540)
Q Consensus 508 ~~l~~s~d~~~l~s~~ 523 (540)
..++..+||..++.+-
T Consensus 229 RHld~g~dgtvwfgcQ 244 (366)
T COG3490 229 RHLDIGRDGTVWFGCQ 244 (366)
T ss_pred eeeeeCCCCcEEEEEE
Confidence 9999999988777653
|
|
| >PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.00091 Score=65.06 Aligned_cols=53 Identities=25% Similarity=0.508 Sum_probs=44.3
Q ss_pred CCCEEEEEecC-ChhHHHHHHHHhcC-CCCeEeeccCCCceEEEeccccceecccc
Q psy18231 70 DTPLVVQFASN-NHDDFVRATQYVAP-HCNGVDLNCGCPQRWAIKEGYGCALLSKQ 123 (540)
Q Consensus 70 ~~~~~~q~~~~-~~~~~~~~~~~~~~-~~~~id~~~gc~~~~~~~~g~g~~l~~~~ 123 (540)
+.|+++|+.|. +++++++.++.+++ +++.|++|++||. .....+.|+.++.++
T Consensus 99 ~~p~i~si~g~~~~~~~~~~a~~~~~~g~d~ielN~scP~-~~~~~~~g~~~~~~~ 153 (420)
T PRK08318 99 DRALIASIMVECNEEEWKEIAPLVEETGADGIELNFGCPH-GMSERGMGSAVGQVP 153 (420)
T ss_pred CceEEEEeccCCCHHHHHHHHHHHHhcCCCEEEEeCCCCC-CccccCCcccccCCH
Confidence 57899999999 89999999998776 7899999999998 344456788888874
|
|
| >PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2 | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.34 Score=42.85 Aligned_cols=127 Identities=10% Similarity=-0.013 Sum_probs=79.8
Q ss_pred EeeeCCCeEEEEeCCCCceEEeeeC-CceEEEEEecCCcEEEeecCCCeEEEEeccccchhhhhccCc--CC---cceEE
Q psy18231 392 LTASLDCRIRRYDIRTGNLVTDYVG-EPIVDACFTRDCQCILTCSTDECLRLFDKATGELLEEYKGHK--SG---DFRIE 465 (540)
Q Consensus 392 ~~~~~dg~i~iwd~~~~~~~~~~~~-~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~--~~---v~~~~ 465 (540)
...-.++...+||.++.+.+.++.- ..=..++ .|++.|+.+.....++.+|..+.+..+++.... .+ +..+.
T Consensus 104 qLTWk~~~~f~yd~~tl~~~~~~~y~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE 181 (264)
T PF05096_consen 104 QLTWKEGTGFVYDPNTLKKIGTFPYPGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELE 181 (264)
T ss_dssp EEESSSSEEEEEETTTTEEEEEEE-SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEE
T ss_pred EEEecCCeEEEEccccceEEEEEecCCcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEE
Confidence 3344567889999999988887763 3445555 577888888888899999988877665554332 22 23343
Q ss_pred EEecCCCCeEEEeeCCCcEEEEEecCCcceeEEEecc-------------cceeeeEEEEcCCCcEEEeec
Q psy18231 466 CCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSV-------------GKAVVNSLCSHPTRKHIMSAC 523 (540)
Q Consensus 466 ~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~-------------~~~~v~~l~~s~d~~~l~s~~ 523 (540)
+- +|...|=.-....|..-|..+|+....+...+ .....+.+||.|+.+.|...+
T Consensus 182 --~i-~G~IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG 249 (264)
T PF05096_consen 182 --YI-NGKIYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG 249 (264)
T ss_dssp --EE-TTEEEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred --EE-cCEEEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence 22 56666666667778888999998887774211 135689999988765554443
|
3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X. |
| >KOG2079|consensus | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.0075 Score=62.00 Aligned_cols=110 Identities=15% Similarity=0.208 Sum_probs=82.4
Q ss_pred cccEEEEEecCCeeEeeeCCCeEEEEeCCCCce--EEeee-CCceEEEEEecCCcEEEeecCCCeEEEEeccccchhhhh
Q psy18231 378 RDSITSVHVSDHEILTASLDCRIRRYDIRTGNL--VTDYV-GEPIVDACFTRDCQCILTCSTDECLRLFDKATGELLEEY 454 (540)
Q Consensus 378 ~~~v~~l~~~~~~l~~~~~dg~i~iwd~~~~~~--~~~~~-~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~ 454 (540)
...+.+.+.-...++.|+..|.+-..|+...-. .+..+ +.+|++++|+.+|..++.|-.+|.|.+||+..++.++.+
T Consensus 89 ~~~v~s~a~~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i 168 (1206)
T KOG2079|consen 89 AAGVISSAIVVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVI 168 (1206)
T ss_pred CcceeeeeeeeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeee
Confidence 344555555557799999999999988875422 11122 368999999999999999999999999999999999988
Q ss_pred ccCcCCcceE-EEEecCCCCeEEEeeCCCcEEEEEe
Q psy18231 455 KGHKSGDFRI-ECCLDSKDSQIFCGSSDGKIYKWQL 489 (540)
Q Consensus 455 ~~~~~~v~~~-~~~~s~~~~~l~s~s~dg~i~iwd~ 489 (540)
..|..+.+.+ ..-+..++..+.++..-|. +|.+
T Consensus 169 ~e~~ap~t~vi~v~~t~~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 169 TEHGAPVTGVIFVGRTSQNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred eecCCccceEEEEEEeCCCcEEEEccCCCc--eEEE
Confidence 8887776554 2245566667888887776 5554
|
|
| >COG3204 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.38 Score=42.69 Aligned_cols=119 Identities=8% Similarity=0.050 Sum_probs=88.2
Q ss_pred eeecCeEEEEeCCCCCEEEEeeCCCcEEEEcCCCCeeEEEeec-CCcceeEEEEeeCCCeEEEeeCCCeEEEEEcCCCce
Q psy18231 162 FVLSGLMHTRFPVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGG-HAHEVNDATAACDSSQIASGASDKSVILWEVTTGQP 240 (540)
Q Consensus 162 ~h~~~v~~v~~spdg~~lat~~~dg~i~iwd~~~~~~~~~~~~-h~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~ 240 (540)
+-+..++++.|+|+.+.|.+......-.||=..+|+.+.++.- .-.....+++..++++.++--.++.+.++.+..+..
T Consensus 83 g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t~ 162 (316)
T COG3204 83 GETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDADTT 162 (316)
T ss_pred cccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCCcc
Confidence 4445599999999999998888777777887788999888742 123345688888888888888889998888876532
Q ss_pred eEec-------c--cc-CCceeEEEECCCCCEEEEecCCCcEEEEEecCC
Q psy18231 241 VRRW-------R--EH-ASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSR 280 (540)
Q Consensus 241 ~~~~-------~--~h-~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~ 280 (540)
+..+ . .+ +...-.++|.|....|+.+-+-.-+.||.+...
T Consensus 163 ~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~ 212 (316)
T COG3204 163 VISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQS 212 (316)
T ss_pred EEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecC
Confidence 2211 1 12 556788999998888888877777888877643
|
|
| >PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.049 Score=54.52 Aligned_cols=113 Identities=10% Similarity=0.032 Sum_probs=78.8
Q ss_pred eEEEEEecCCcEEEeecCCCeEEEEeccccchhhhhc-cCcCCcceEEEEecCCCCeEEEeeCCCcEEEEEec-------
Q psy18231 419 IVDACFTRDCQCILTCSTDECLRLFDKATGELLEEYK-GHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLV------- 490 (540)
Q Consensus 419 i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~v~~~~~~~s~~~~~l~s~s~dg~i~iwd~~------- 490 (540)
..-+.-|.-++..++.+...++.|||.+.+....+-. ...+.|..+++...|+++.+.+.+..+.|.+|--.
T Consensus 32 ~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~ 111 (631)
T PF12234_consen 32 PSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNK 111 (631)
T ss_pred cceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcC
Confidence 3444444455655555556789999998876432222 34667889999999999999999999999998642
Q ss_pred --CCcceeEEEecccc-eeeeEEEEcCCCcEEEeecCCeeEEEEc
Q psy18231 491 --DSSQISTLIHSVGK-AVVNSLCSHPTRKHIMSACGNNVKLWTA 532 (540)
Q Consensus 491 --~~~~~~~~~~~~~~-~~v~~l~~s~d~~~l~s~~d~~i~iw~~ 532 (540)
+..++..+....|. .+|.+..|.++|.+++++ ++.+.|++-
T Consensus 112 ~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~s-GNqlfv~dk 155 (631)
T PF12234_consen 112 GPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGS-GNQLFVFDK 155 (631)
T ss_pred CcccceeEEEEeecCCCCCccceeEecCCeEEEEe-CCEEEEECC
Confidence 12345555443454 679999999999766655 467777764
|
This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits. |
| >PRK10115 protease 2; Provisional | Back alignment and domain information |
|---|
Probab=96.60 E-value=1.2 Score=46.63 Aligned_cols=111 Identities=13% Similarity=0.005 Sum_probs=67.0
Q ss_pred cCeEEEEeCCCCCEEEEee-----CCCcEEEEcCCCCeeEEEeecCCcceeEEEEeeCCCeEEEeeCC------CeEEEE
Q psy18231 165 SGLMHTRFPVDGSYCLTCG-----SDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASD------KSVILW 233 (540)
Q Consensus 165 ~~v~~v~~spdg~~lat~~-----~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~d------g~i~iw 233 (540)
-.+..+.+||||++|+.+. ....|++.|+.++..+...-.... ..++|++|++.|+-...+ ..|..+
T Consensus 127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~~--~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h 204 (686)
T PRK10115 127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNVE--PSFVWANDSWTFYYVRKHPVTLLPYQVWRH 204 (686)
T ss_pred EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCcc--eEEEEeeCCCEEEEEEecCCCCCCCEEEEE
Confidence 4567788999999988543 234688999988864432221222 569999999877655432 367778
Q ss_pred EcCCC--ceeEeccccCCcee-EEEECCCCCEEEEecC---CCcEEEEEe
Q psy18231 234 EVTTG--QPVRRWREHASKVT-CVKFNEDSSVVISGSQ---DNTVMMWDV 277 (540)
Q Consensus 234 d~~~~--~~~~~~~~h~~~v~-~~~~~~~~~~l~s~~~---dg~i~iwd~ 277 (540)
++.++ +....+........ ....+.++++++..+. ++.+.+++.
T Consensus 205 ~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~ 254 (686)
T PRK10115 205 TIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDA 254 (686)
T ss_pred ECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEEC
Confidence 88877 33333433333333 3333447776554433 345777774
|
|
| >PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.39 Score=43.95 Aligned_cols=115 Identities=8% Similarity=0.133 Sum_probs=62.4
Q ss_pred ecCeEEEEeCCCCCEEEEeeCCCcEEEEcCCCCeeEEEeecCCcceeEEEEeeCCCeEEEeeCCCeEEEEEc-CCCceeE
Q psy18231 164 LSGLMHTRFPVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEV-TTGQPVR 242 (540)
Q Consensus 164 ~~~v~~v~~spdg~~lat~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~-~~~~~~~ 242 (540)
.+.+..+.-++||+++++++.-....-||.-...-...-..-...|.++.|.|++.+.+.+ ..|.|+.=+. ...+.-.
T Consensus 144 ~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~~~w~ 222 (302)
T PF14870_consen 144 SGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDGETWS 222 (302)
T ss_dssp ---EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEEEEE-
T ss_pred cceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEe-CCcEEEEccCCCCccccc
Confidence 3678888899999999998766666678854322222222346889999999998776654 7788888762 2222111
Q ss_pred e----ccccCCceeEEEECCCCCEEEEecCCCcEEEEEecCCC
Q psy18231 243 R----WREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRS 281 (540)
Q Consensus 243 ~----~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~ 281 (540)
. +....-.+..++|.+++...++|+ .|.+ +...+.++
T Consensus 223 ~~~~~~~~~~~~~ld~a~~~~~~~wa~gg-~G~l-~~S~DgGk 263 (302)
T PF14870_consen 223 EPIIPIKTNGYGILDLAYRPPNEIWAVGG-SGTL-LVSTDGGK 263 (302)
T ss_dssp --B-TTSS--S-EEEEEESSSS-EEEEES-TT-E-EEESSTTS
T ss_pred cccCCcccCceeeEEEEecCCCCEEEEeC-CccE-EEeCCCCc
Confidence 1 112233489999999877777665 4543 33444443
|
|
| >PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain | Back alignment and domain information |
|---|
Probab=96.47 E-value=0.0092 Score=36.90 Aligned_cols=34 Identities=21% Similarity=0.216 Sum_probs=30.2
Q ss_pred CcceeEEEEeeCCCeEEEeeCCCeEEEEEcCCCce
Q psy18231 206 AHEVNDATAACDSSQIASGASDKSVILWEVTTGQP 240 (540)
Q Consensus 206 ~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~ 240 (540)
...|.+++|+|...+||.++.+|.|.++.+ +++.
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr 44 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQR 44 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence 457999999999999999999999999998 5544
|
|
| >PHA03098 kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=96.47 E-value=0.18 Score=51.29 Aligned_cols=104 Identities=11% Similarity=0.107 Sum_probs=51.8
Q ss_pred CCCCEEEEeeCCC------cEEEEcCCCCeeEEE--eecCCcceeEEEEeeCCCeEEEeeCC-----CeEEEEEcCCCce
Q psy18231 174 VDGSYCLTCGSDK------KIKLWNPYRNLLLKT--YGGHAHEVNDATAACDSSQIASGASD-----KSVILWEVTTGQP 240 (540)
Q Consensus 174 pdg~~lat~~~dg------~i~iwd~~~~~~~~~--~~~h~~~v~~l~~sp~~~~l~s~s~d-----g~i~iwd~~~~~~ 240 (540)
.++..++.||.++ .+..||..+.+-... +........ ...-+++.++.||.+ ..+..||..+++.
T Consensus 293 ~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~--~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W 370 (534)
T PHA03098 293 LNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPG--VTVFNNRIYVIGGIYNSISLNTVESWKPGESKW 370 (534)
T ss_pred ECCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccce--EEEECCEEEEEeCCCCCEecceEEEEcCCCCce
Confidence 3556666776542 577888777654221 111111112 222367777888765 3577788776653
Q ss_pred eEe--ccccCCceeEEEECCCCCEEEEecCC------CcEEEEEecCCC
Q psy18231 241 VRR--WREHASKVTCVKFNEDSSVVISGSQD------NTVMMWDVKSRS 281 (540)
Q Consensus 241 ~~~--~~~h~~~v~~~~~~~~~~~l~s~~~d------g~i~iwd~~~~~ 281 (540)
... +....... +++. -+++..+.||.+ ..+..||+.+.+
T Consensus 371 ~~~~~lp~~r~~~-~~~~-~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~ 417 (534)
T PHA03098 371 REEPPLIFPRYNP-CVVN-VNNLIYVIGGISKNDELLKTVECFSLNTNK 417 (534)
T ss_pred eeCCCcCcCCccc-eEEE-ECCEEEEECCcCCCCcccceEEEEeCCCCe
Confidence 321 11111111 1111 245666666632 346667766544
|
|
| >PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain | Back alignment and domain information |
|---|
Probab=96.42 E-value=0.0091 Score=36.93 Aligned_cols=34 Identities=6% Similarity=-0.105 Sum_probs=29.6
Q ss_pred ecCeEEEEeCCCCCEEEEeeCCCcEEEEcCCCCee
Q psy18231 164 LSGLMHTRFPVDGSYCLTCGSDKKIKLWNPYRNLL 198 (540)
Q Consensus 164 ~~~v~~v~~spdg~~lat~~~dg~i~iwd~~~~~~ 198 (540)
...|.+++|+|...+||.+..+|.|.++.+ +++.
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr 44 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQR 44 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence 356899999999999999999999999998 5543
|
|
| >KOG2280|consensus | Back alignment and domain information |
|---|
Probab=96.25 E-value=0.59 Score=46.97 Aligned_cols=85 Identities=15% Similarity=0.198 Sum_probs=55.2
Q ss_pred CCcEEEEcCCCCeeEEEeecCCcceeEEEEeeCCCeEEEeeCCCeEEEEEcCCCceeEe--c--cccCCceeEEEECCCC
Q psy18231 185 DKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPVRR--W--REHASKVTCVKFNEDS 260 (540)
Q Consensus 185 dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~--~--~~h~~~v~~~~~~~~~ 260 (540)
.-.|+|++. +|+++.++.-..+.+-.+.|+.+ ..|++...||++.++++. |+.+.. . ......|..+.|..+|
T Consensus 63 ~~~I~If~~-sG~lL~~~~w~~~~lI~mgWs~~-eeLI~v~k~g~v~Vy~~~-ge~ie~~svg~e~~~~~I~ec~~f~~G 139 (829)
T KOG2280|consen 63 RPYIRIFNI-SGQLLGRILWKHGELIGMGWSDD-EELICVQKDGTVHVYGLL-GEFIESNSVGFESQMSDIVECRFFHNG 139 (829)
T ss_pred ceeEEEEec-cccchHHHHhcCCCeeeecccCC-ceEEEEeccceEEEeecc-hhhhcccccccccccCceeEEEEecCc
Confidence 456889996 67777766554558889999955 467788899999999984 333322 1 2234456666666666
Q ss_pred CEEEEecCCCcEEE
Q psy18231 261 SVVISGSQDNTVMM 274 (540)
Q Consensus 261 ~~l~s~~~dg~i~i 274 (540)
-.+.+. +|++.+
T Consensus 140 Vavlt~--~g~v~~ 151 (829)
T KOG2280|consen 140 VAVLTV--SGQVIL 151 (829)
T ss_pred eEEEec--CCcEEE
Confidence 544444 344443
|
|
| >KOG2395|consensus | Back alignment and domain information |
|---|
Probab=96.20 E-value=0.068 Score=50.95 Aligned_cols=144 Identities=22% Similarity=0.347 Sum_probs=90.9
Q ss_pred CCCeE-EEeeCCCeEEEEEcCCCceeEeccccCCceeEEEECCCCC--E-----EEEecCCCcEEEEEecCCCCCCcchh
Q psy18231 217 DSSQI-ASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSS--V-----VISGSQDNTVMMWDVKSRSHHPIQVR 288 (540)
Q Consensus 217 ~~~~l-~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~--~-----l~s~~~dg~i~iwd~~~~~~~~~~~~ 288 (540)
+.++| .++.....+.-.|++.|+.+...+-|.. |+-+.+.|+.+ . -+.|-.|..|.-||.+-.....+.
T Consensus 344 dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~-- 420 (644)
T KOG2395|consen 344 DSNLILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLA-- 420 (644)
T ss_pred ccceEeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceee--
Confidence 34444 3455556788889999999998887766 77778877543 1 233445778888888743210000
Q ss_pred hhhHhhhhcCCceeEEEEeecccccccccCceeeEEEeeeecccccceeeeeeccceeEEEeecccceeccccccccccc
Q psy18231 289 CLNEALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHN 368 (540)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (540)
+..
T Consensus 421 -------------------------------------------------------------~~q---------------- 423 (644)
T KOG2395|consen 421 -------------------------------------------------------------VVQ---------------- 423 (644)
T ss_pred -------------------------------------------------------------eee----------------
Confidence 000
Q ss_pred chhhhhhcccccEEEEEecC-CeeEeeeCCCeEEEEeCCCCce-EEeee--CCceEEEEEecCCcEEEeecCCCeEEEEe
Q psy18231 369 SCFQALKEARDSITSVHVSD-HEILTASLDCRIRRYDIRTGNL-VTDYV--GEPIVDACFTRDCQCILTCSTDECLRLFD 444 (540)
Q Consensus 369 ~~~~~~~~~~~~v~~l~~~~-~~l~~~~~dg~i~iwd~~~~~~-~~~~~--~~~i~~~~~sp~~~~l~~~~~dg~i~i~d 444 (540)
.+.+ .......|.+-.. .++++|+.+|.||+||- .+.. ...+. |.+|..+..+.+|+++++.+. ..+.+.+
T Consensus 424 --~kqy-~~k~nFsc~aTT~sG~IvvgS~~GdIRLYdr-i~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc~-tyLlLi~ 498 (644)
T KOG2395|consen 424 --SKQY-STKNNFSCFATTESGYIVVGSLKGDIRLYDR-IGRRAKTALPGLGDAIKHVDVTADGKWILATCK-TYLLLID 498 (644)
T ss_pred --cccc-ccccccceeeecCCceEEEeecCCcEEeehh-hhhhhhhcccccCCceeeEEeeccCcEEEEecc-cEEEEEE
Confidence 0000 0112334555544 88999999999999997 4443 33444 478999999999999876554 4565555
Q ss_pred c
Q psy18231 445 K 445 (540)
Q Consensus 445 ~ 445 (540)
+
T Consensus 499 t 499 (644)
T KOG2395|consen 499 T 499 (644)
T ss_pred E
Confidence 4
|
|
| >PHA02790 Kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=96.17 E-value=0.41 Score=47.72 Aligned_cols=103 Identities=11% Similarity=0.034 Sum_probs=51.7
Q ss_pred CCCEEEEeeCCC-----cEEEEcCCCCeeEE--EeecCCcceeEEEEeeCCCeEEEeeCC--CeEEEEEcCCCceeE--e
Q psy18231 175 DGSYCLTCGSDK-----KIKLWNPYRNLLLK--TYGGHAHEVNDATAACDSSQIASGASD--KSVILWEVTTGQPVR--R 243 (540)
Q Consensus 175 dg~~lat~~~dg-----~i~iwd~~~~~~~~--~~~~h~~~v~~l~~sp~~~~l~s~s~d--g~i~iwd~~~~~~~~--~ 243 (540)
++..+++||.++ ++..||..+++-.. .+....... ++ ..-++...+.|+.+ .++..||..+++... .
T Consensus 271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~-~~-v~~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~ 348 (480)
T PHA02790 271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYA-SG-VPANNKLYVVGGLPNPTSVERWFHGDAAWVNMPS 348 (480)
T ss_pred CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcc-eE-EEECCEEEEECCcCCCCceEEEECCCCeEEECCC
Confidence 455667777543 56678877764322 222111111 22 23477777888764 357788876654322 1
Q ss_pred ccccCCceeEEEECCCCCEEEEecCCC---cEEEEEecCCC
Q psy18231 244 WREHASKVTCVKFNEDSSVVISGSQDN---TVMMWDVKSRS 281 (540)
Q Consensus 244 ~~~h~~~v~~~~~~~~~~~l~s~~~dg---~i~iwd~~~~~ 281 (540)
+.........+.. +++..+.||.++ .+..||.++..
T Consensus 349 l~~~r~~~~~~~~--~g~IYviGG~~~~~~~ve~ydp~~~~ 387 (480)
T PHA02790 349 LLKPRCNPAVASI--NNVIYVIGGHSETDTTTEYLLPNHDQ 387 (480)
T ss_pred CCCCCcccEEEEE--CCEEEEecCcCCCCccEEEEeCCCCE
Confidence 2111111122222 566667776543 35556655443
|
|
| >PHA03098 kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=96.17 E-value=0.47 Score=48.32 Aligned_cols=102 Identities=7% Similarity=0.106 Sum_probs=50.5
Q ss_pred CCeeEeeeCC------CeEEEEeCCCCceEE--eeeCCceEEEEEecCCcEEEeecCC--------CeEEEEeccccc--
Q psy18231 388 DHEILTASLD------CRIRRYDIRTGNLVT--DYVGEPIVDACFTRDCQCILTCSTD--------ECLRLFDKATGE-- 449 (540)
Q Consensus 388 ~~~l~~~~~d------g~i~iwd~~~~~~~~--~~~~~~i~~~~~sp~~~~l~~~~~d--------g~i~i~d~~~~~-- 449 (540)
....+.|+.+ ..+..||..+.+-.. .+........+...++++++.|+.+ ..+.+||..+.+
T Consensus 390 ~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~ 469 (534)
T PHA03098 390 NLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGGCAIYHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWT 469 (534)
T ss_pred CEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCceEEEECCEEEEECCccCCCCCcccceEEEecCCCCcee
Confidence 3455555521 357788887654322 1111111112233466777777643 238889987653
Q ss_pred hhhhhccCcCCcceEEEEecCCCCeEEEeeCC-----CcEEEEEecCCc
Q psy18231 450 LLEEYKGHKSGDFRIECCLDSKDSQIFCGSSD-----GKIYKWQLVDSS 493 (540)
Q Consensus 450 ~~~~~~~~~~~v~~~~~~~s~~~~~l~s~s~d-----g~i~iwd~~~~~ 493 (540)
.+..+....... .. +. .+++.++.|+.+ +.|.+||..+.+
T Consensus 470 ~~~~~~~~r~~~-~~-~~--~~~~iyv~GG~~~~~~~~~v~~yd~~~~~ 514 (534)
T PHA03098 470 ELSSLNFPRINA-SL-CI--FNNKIYVVGGDKYEYYINEIEVYDDKTNT 514 (534)
T ss_pred eCCCCCcccccc-eE-EE--ECCEEEEEcCCcCCcccceeEEEeCCCCE
Confidence 222221111111 11 12 266777777654 467888876543
|
|
| >cd04741 DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) class 1A FMN-binding domain | Back alignment and domain information |
|---|
Probab=96.12 E-value=0.026 Score=51.86 Aligned_cols=96 Identities=13% Similarity=0.173 Sum_probs=61.7
Q ss_pred ceecCCceEEeccCCCCC-HHHHHHHHHcCCCEEEeeeeecccccccchhh----------------------cccccc-
Q psy18231 11 STLLKNLKHCDSTLWTSK-LNFRQLVRSHNVDLCFTPMIIADSFIKSSKAR----------------------NNEFST- 66 (540)
Q Consensus 11 ~~~~~~~~~~ap~~~~~~-~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------~~~~~~- 66 (540)
++.+++++++|-=---.+ ...|++.. .|++-+.+.-++......+.+.+ ...+..
T Consensus 5 Gl~l~nPi~~Asg~~~~~~e~~~~~~~-~G~Gavv~ktit~~~~~gn~~pr~~~~~~~~~N~~G~~n~g~~~~~~~i~~~ 83 (294)
T cd04741 5 GLTISPPLMNAAGPWCTTLEDLLELAA-SSTGAVTTRSSTLAGRPGNPEPRYYAFPLGSINSLGLPNLGLDYYLEYIRTI 83 (294)
T ss_pred CeeCCCCCEECCCCCCCCHHHHHHHHH-cCCcEEEeCcccCCCCCCCCCCcEEecCccccccccCCCcCHHHHHHHHHHH
Confidence 577889999984331122 34555544 67777777766654332111110 001110
Q ss_pred ----CCCCCCEEEEEecCChhHHHHHHHHhcC----CCCeEeeccCCCce
Q psy18231 67 ----SPEDTPLVVQFASNNHDDFVRATQYVAP----HCNGVDLNCGCPQR 108 (540)
Q Consensus 67 ----~~~~~~~~~q~~~~~~~~~~~~~~~~~~----~~~~id~~~gc~~~ 108 (540)
++.+.|+++|+.++ ++++++.++.+.+ +.|.|++|++||..
T Consensus 84 ~~~~~~~~~pvivsi~g~-~~~~~~~~~~~~~~~~~~ad~ielN~sCPn~ 132 (294)
T cd04741 84 SDGLPGSAKPFFISVTGS-AEDIAAMYKKIAAHQKQFPLAMELNLSCPNV 132 (294)
T ss_pred hhhccccCCeEEEECCCC-HHHHHHHHHHHHhhccccccEEEEECCCCCC
Confidence 12468999999999 9999998887765 47999999999984
|
DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. |
| >PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs | Back alignment and domain information |
|---|
Probab=95.91 E-value=0.81 Score=47.51 Aligned_cols=74 Identities=18% Similarity=0.261 Sum_probs=52.3
Q ss_pred cceeEEEEeeCCCeEEEeeCCCeEEEEEcCC----------Cce---eEec--------cccCCceeEEEECCC---CCE
Q psy18231 207 HEVNDATAACDSSQIASGASDKSVILWEVTT----------GQP---VRRW--------REHASKVTCVKFNED---SSV 262 (540)
Q Consensus 207 ~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~----------~~~---~~~~--------~~h~~~v~~~~~~~~---~~~ 262 (540)
-.|..+.++|+|++|+..|..|. .|-.+.. |+. .+++ ..+...|..+.|+|. +.+
T Consensus 85 f~v~~i~~n~~g~~lal~G~~~v-~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~ 163 (717)
T PF10168_consen 85 FEVHQISLNPTGSLLALVGPRGV-VVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSH 163 (717)
T ss_pred eeEEEEEECCCCCEEEEEcCCcE-EEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCe
Confidence 46888999999999999988664 3433321 111 1111 134567999999995 578
Q ss_pred EEEecCCCcEEEEEecCCC
Q psy18231 263 VISGSQDNTVMMWDVKSRS 281 (540)
Q Consensus 263 l~s~~~dg~i~iwd~~~~~ 281 (540)
|+.-..|+++++||+....
T Consensus 164 l~vLtsdn~lR~y~~~~~~ 182 (717)
T PF10168_consen 164 LVVLTSDNTLRLYDISDPQ 182 (717)
T ss_pred EEEEecCCEEEEEecCCCC
Confidence 8888899999999997443
|
It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells []. |
| >COG5276 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.77 E-value=1.3 Score=39.32 Aligned_cols=272 Identities=10% Similarity=0.007 Sum_probs=150.6
Q ss_pred eecCeEEEEeCCCCCEEEEeeCCCcEEEEcCCCCeeEEEeec--CCcceeEEEEeeCCCeEEEeeCCCeEEEEEcCCCce
Q psy18231 163 VLSGLMHTRFPVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGG--HAHEVNDATAACDSSQIASGASDKSVILWEVTTGQP 240 (540)
Q Consensus 163 h~~~v~~v~~spdg~~lat~~~dg~i~iwd~~~~~~~~~~~~--h~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~ 240 (540)
-.+-+..+.++.+ +...+..+.-++|.|+.+......+.. -.+--.++.. .|++...+..|.-+.+.|+.+.+.
T Consensus 85 ~~~l~~Dv~vse~--yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~v--sGn~aYVadlddgfLivdvsdpss 160 (370)
T COG5276 85 ARDLFADVRVSEE--YVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGVYV--SGNYAYVADLDDGFLIVDVSDPSS 160 (370)
T ss_pred hhhhhheeEeccc--EEEEEcCCCceEEEeccCCCCcceeccccCCceEEEEEe--cCCEEEEeeccCcEEEEECCCCCC
Confidence 3355667777755 666666778899999876543322211 1133344444 588888888666678888876532
Q ss_pred ---eEeccccCCceeEEEECCCCCEEEEecCCCcEEEEEecCCCCCCcchhhhhHhhhhcCCceeEEEEeeccccccccc
Q psy18231 241 ---VRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHLSN 317 (540)
Q Consensus 241 ---~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (540)
...+......-..++.+ |++-..+..|+-+.+-|+.........
T Consensus 161 P~lagrya~~~~d~~~v~IS--Gn~AYvA~~d~GL~ivDVSnp~sPvli------------------------------- 207 (370)
T COG5276 161 PQLAGRYALPGGDTHDVAIS--GNYAYVAWRDGGLTIVDVSNPHSPVLI------------------------------- 207 (370)
T ss_pred ceeeeeeccCCCCceeEEEe--cCeEEEEEeCCCeEEEEccCCCCCeEE-------------------------------
Confidence 23333344444666665 667777888999999999876531111
Q ss_pred CceeeEEEeeeecccccceeeeeeccceeEEEeecccceecccccccccccchhhhhhcccccEEEEEecCCeeEeeeCC
Q psy18231 318 GLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEARDSITSVHVSDHEILTASLD 397 (540)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~d 397 (540)
........+.++..++++....-.+
T Consensus 208 -------------------------------------------------------~~~n~g~g~~sv~vsdnr~y~vvy~ 232 (370)
T COG5276 208 -------------------------------------------------------GSYNTGPGTYSVSVSDNRAYLVVYD 232 (370)
T ss_pred -------------------------------------------------------EEEecCCceEEEEecCCeeEEEEcc
Confidence 0001122667788888665555555
Q ss_pred CeEEEEeCCCCceEEee---eCCceEEE-EEecCCcEEEeecCCCeEEEEeccccch---hhhhccCcCCcceEEEEecC
Q psy18231 398 CRIRRYDIRTGNLVTDY---VGEPIVDA-CFTRDCQCILTCSTDECLRLFDKATGEL---LEEYKGHKSGDFRIECCLDS 470 (540)
Q Consensus 398 g~i~iwd~~~~~~~~~~---~~~~i~~~-~~sp~~~~l~~~~~dg~i~i~d~~~~~~---~~~~~~~~~~v~~~~~~~s~ 470 (540)
--+.+-|..+.+....+ +...+.++ .+.-.+++......+.-+-+-|+.+... ...+.........++ .
T Consensus 233 egvlivd~s~~ssp~~~gsyet~~p~~~s~v~Vs~~~~Yvadga~gl~~idisnp~spfl~ss~~t~g~~a~gi~----a 308 (370)
T COG5276 233 EGVLIVDVSGPSSPTVFGSYETSNPVSISTVPVSGEYAYVADGAKGLPIIDISNPPSPFLSSSLDTAGYQAAGIR----A 308 (370)
T ss_pred cceEEEecCCCCCceEeeccccCCcccccceecccceeeeeccccCceeEeccCCCCCchhccccCCCccccceE----E
Confidence 56777787766543333 22333332 2333456666666666666666654321 111111111111221 1
Q ss_pred CCCeEEEeeCCCcEEEEEecCCcceeEEEecccceeeeEEEEcCCCcEEEeec-CCeeEEEEcc
Q psy18231 471 KDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC-GNNVKLWTAE 533 (540)
Q Consensus 471 ~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~-d~~i~iw~~~ 533 (540)
-+.++..+..+ +..+-+....+...... +....+.+.+.+-+.+.+.+.. ++.+.||+..
T Consensus 309 y~~y~yiadkn-~g~vV~~s~~s~m~~~~--g~~ti~~s~~v~~~~q~~y~~d~~~gl~i~~~~ 369 (370)
T COG5276 309 YGNYNYIADKN-TGAVVDASPPSMMDKRP--GRPTIGQSCDVSVDTQIIYSTDYNGGLSIIEYL 369 (370)
T ss_pred ecCeeEeccCC-ceEEEeCCChhhccccc--CcceEeeecceEEEeeEEEEeecCCCEEEEEec
Confidence 23455555444 44455544433333222 3333455555555667888888 9999999853
|
|
| >PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2 | Back alignment and domain information |
|---|
Probab=95.73 E-value=1.4 Score=39.15 Aligned_cols=111 Identities=9% Similarity=0.012 Sum_probs=71.0
Q ss_pred eEEEEeCCCCCEEEEeeCCC--cEEEEcCCCCeeEEEeecCC-cceeEEEEeeCCCeEEEeeCCCeEEEEEcCCCceeEe
Q psy18231 167 LMHTRFPVDGSYCLTCGSDK--KIKLWNPYRNLLLKTYGGHA-HEVNDATAACDSSQIASGASDKSVILWEVTTGQPVRR 243 (540)
Q Consensus 167 v~~v~~spdg~~lat~~~dg--~i~iwd~~~~~~~~~~~~h~-~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~ 243 (540)
...+.|..+|.++-+.+.-| .|+.+|+.+++.+....-.. ---..++.. +++...-.-.++...+||..+-+.+.+
T Consensus 47 TQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~-~d~l~qLTWk~~~~f~yd~~tl~~~~~ 125 (264)
T PF05096_consen 47 TQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL-GDKLYQLTWKEGTGFVYDPNTLKKIGT 125 (264)
T ss_dssp EEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE-TTEEEEEESSSSEEEEEETTTTEEEEE
T ss_pred CccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE-CCEEEEEEecCCeEEEEccccceEEEE
Confidence 44567777887777777655 79999999998776654221 111233444 344555556689999999999888887
Q ss_pred ccccCCceeEEEECCCCCEEEEecCCCcEEEEEecCCC
Q psy18231 244 WREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRS 281 (540)
Q Consensus 244 ~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~ 281 (540)
+.- .+.=+.++. |++.|+.......|.++|..+.+
T Consensus 126 ~~y-~~EGWGLt~--dg~~Li~SDGS~~L~~~dP~~f~ 160 (264)
T PF05096_consen 126 FPY-PGEGWGLTS--DGKRLIMSDGSSRLYFLDPETFK 160 (264)
T ss_dssp EE--SSS--EEEE--CSSCEEEE-SSSEEEEE-TTT-S
T ss_pred Eec-CCcceEEEc--CCCEEEEECCccceEEECCcccc
Confidence 753 345566763 56667766666788999877654
|
3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X. |
| >TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family | Back alignment and domain information |
|---|
Probab=95.48 E-value=4.1 Score=42.94 Aligned_cols=64 Identities=13% Similarity=0.221 Sum_probs=41.7
Q ss_pred CCeEEEeeCCCeEEEEEcCCCceeEeccccCCc--------eeEEEECC----------------CCCEEEEecCCCcEE
Q psy18231 218 SSQIASGASDKSVILWEVTTGQPVRRWREHASK--------VTCVKFNE----------------DSSVVISGSQDNTVM 273 (540)
Q Consensus 218 ~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~--------v~~~~~~~----------------~~~~l~s~~~dg~i~ 273 (540)
+..|+.++.++.|.-.|..+|+.+..+...... ...+.+.. .+..++.++.|+.+.
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li 273 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI 273 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence 456777788889999999999988776532211 11122211 234677777788888
Q ss_pred EEEecCCC
Q psy18231 274 MWDVKSRS 281 (540)
Q Consensus 274 iwd~~~~~ 281 (540)
-.|.++++
T Consensus 274 ALDA~TGk 281 (764)
T TIGR03074 274 ALDADTGK 281 (764)
T ss_pred EEECCCCC
Confidence 88877776
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases. |
| >PRK05437 isopentenyl pyrophosphate isomerase; Provisional | Back alignment and domain information |
|---|
Probab=95.43 E-value=0.035 Score=52.29 Aligned_cols=97 Identities=11% Similarity=0.080 Sum_probs=65.9
Q ss_pred ecCCceEEeccCCCCCHHHHH------HHHHcCCCEEEeeeeecccccccchhhc--cccccCCCCCCEEE-----EEec
Q psy18231 13 LLKNLKHCDSTLWTSKLNFRQ------LVRSHNVDLCFTPMIIADSFIKSSKARN--NEFSTSPEDTPLVV-----QFAS 79 (540)
Q Consensus 13 ~~~~~~~~ap~~~~~~~~~r~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~-----q~~~ 79 (540)
.+..|++.|||+|.+.++++- +++++|..+.++++ ...++..+... ..+.....+.|++. |..+
T Consensus 58 ~l~~Pi~i~~MtGgs~~~~~in~~La~~a~~~G~~~~~Gs~---~~~~~~~~~~~~~~~vr~~~p~~p~~aNl~~~~~~~ 134 (352)
T PRK05437 58 KLSAPFLINAMTGGSEKAKEINRKLAEAAEELGIAMGVGSQ---RAALKDPELADSFSVVRKVAPDGLLFANLGAVQLYG 134 (352)
T ss_pred eecCCEEecccCCCChhHHHHHHHHHHHHHHcCCCeEeccc---HhhccChhhHHHHHHHHHHCCCceEEeecCccccCC
Confidence 468899999999999988876 88899999999988 44444333221 11111223667666 7767
Q ss_pred CChhHHHHHHHHhcCCCCeEeeccCCCceEEEecc
Q psy18231 80 NNHDDFVRATQYVAPHCNGVDLNCGCPQRWAIKEG 114 (540)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~id~~~gc~~~~~~~~g 114 (540)
.+++.+.++.+++.. +.+.++.+|++......+
T Consensus 135 ~~~~~~~~~~~~~~a--dal~l~l~~~qe~~~p~g 167 (352)
T PRK05437 135 YGVEEAQRAVEMIEA--DALQIHLNPLQELVQPEG 167 (352)
T ss_pred CCHHHHHHHHHhcCC--CcEEEeCccchhhcCCCC
Confidence 778888888888855 666667666654443333
|
|
| >PF15390 DUF4613: Domain of unknown function (DUF4613) | Back alignment and domain information |
|---|
Probab=95.23 E-value=3.5 Score=40.66 Aligned_cols=121 Identities=11% Similarity=0.162 Sum_probs=75.2
Q ss_pred eeeeeecCeEEEEeCCC----CCEEEEeeCCCcEEEEcCC-----CCeeEEEeecCC-c--c--eeEEEEeeCCCeEEEe
Q psy18231 159 RELFVLSGLMHTRFPVD----GSYCLTCGSDKKIKLWNPY-----RNLLLKTYGGHA-H--E--VNDATAACDSSQIASG 224 (540)
Q Consensus 159 ~~~~h~~~v~~v~~spd----g~~lat~~~dg~i~iwd~~-----~~~~~~~~~~h~-~--~--v~~l~~sp~~~~l~s~ 224 (540)
..++...-|..+.|.|- -..|++......|.||.+. +++.+..-..+- . + -..+.|+|....|+.-
T Consensus 51 ~viGqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VL 130 (671)
T PF15390_consen 51 KVIGQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVL 130 (671)
T ss_pred cEeeccceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEE
Confidence 34566778999999984 3244445567899999864 233333322211 1 1 1457899988877765
Q ss_pred eCCCeEEEEEcCCC--ceeEeccccCCceeEEEECCCCCEEEEecC-CCcEEEEEecCC
Q psy18231 225 ASDKSVILWEVTTG--QPVRRWREHASKVTCVKFNEDSSVVISGSQ-DNTVMMWDVKSR 280 (540)
Q Consensus 225 s~dg~i~iwd~~~~--~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~-dg~i~iwd~~~~ 280 (540)
.....-.+.++... +....+ ...+.|.|.+|.+||+.|+.+-. .=.-.+||-...
T Consensus 131 T~~dvSV~~sV~~d~srVkaDi-~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~qK 188 (671)
T PF15390_consen 131 TARDVSVLPSVHCDSSRVKADI-KTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSAQK 188 (671)
T ss_pred ecCceeEeeeeeeCCceEEEec-cCCceEEEEEecCcCCEEEEEeCCeEEEEEecCchh
Confidence 55444455665433 222334 45778999999999988776532 234567875443
|
|
| >PHA02790 Kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=95.09 E-value=1.2 Score=44.40 Aligned_cols=102 Identities=4% Similarity=-0.038 Sum_probs=49.4
Q ss_pred EEecCCeeEeeeCCC---eEEEEeCCCCceEEe--eeCCceEEEEEecCCcEEEeecCCCeEEEEeccccc--hhhhhcc
Q psy18231 384 VHVSDHEILTASLDC---RIRRYDIRTGNLVTD--YVGEPIVDACFTRDCQCILTCSTDECLRLFDKATGE--LLEEYKG 456 (540)
Q Consensus 384 l~~~~~~l~~~~~dg---~i~iwd~~~~~~~~~--~~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~ 456 (540)
+.......+.|+.++ .+..||.++.+-... +....-...+..-++++.+.|+ .+.+||..+.+ .+..+..
T Consensus 359 ~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~~~~~~~~~IYv~GG---~~e~ydp~~~~W~~~~~m~~ 435 (480)
T PHA02790 359 ASINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKSCALVFGRRLFLVGR---NAEFYCESSNTWTLIDDPIY 435 (480)
T ss_pred EEECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccceEEEECCEEEEECC---ceEEecCCCCcEeEcCCCCC
Confidence 334445566666543 466788776543221 1111111122234677777774 46788876543 2222221
Q ss_pred CcCCcceEEEEecCCCCeEEEeeCC-----CcEEEEEecCC
Q psy18231 457 HKSGDFRIECCLDSKDSQIFCGSSD-----GKIYKWQLVDS 492 (540)
Q Consensus 457 ~~~~v~~~~~~~s~~~~~l~s~s~d-----g~i~iwd~~~~ 492 (540)
..... .+ + .-+|+..+.|+.+ ..|..||..+.
T Consensus 436 ~r~~~-~~--~-v~~~~IYviGG~~~~~~~~~ve~Yd~~~~ 472 (480)
T PHA02790 436 PRDNP-EL--I-IVDNKLLLIGGFYRGSYIDTIEVYNNRTY 472 (480)
T ss_pred Ccccc-EE--E-EECCEEEEECCcCCCcccceEEEEECCCC
Confidence 11111 11 2 2356777777754 24556665443
|
|
| >PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus | Back alignment and domain information |
|---|
Probab=95.04 E-value=3.5 Score=39.70 Aligned_cols=83 Identities=12% Similarity=0.172 Sum_probs=55.4
Q ss_pred hhhcccccEEEEEecC--CeeEeeeCCCeEEEEeCCCCceEEeeeCCceEEEEEec----C----------------CcE
Q psy18231 373 ALKEARDSITSVHVSD--HEILTASLDCRIRRYDIRTGNLVTDYVGEPIVDACFTR----D----------------CQC 430 (540)
Q Consensus 373 ~~~~~~~~v~~l~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~i~~~~~sp----~----------------~~~ 430 (540)
.+......+.++..+| .+.++...=|.|.++|+.++..++.++|-.=-.+.|-. . ..+
T Consensus 302 ~l~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~ 381 (415)
T PF14655_consen 302 GLPDSKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALF 381 (415)
T ss_pred eeccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEE
Confidence 3445566788899999 55666666699999999999988888773222222211 1 112
Q ss_pred -EEeecCCCeEEEEeccccchhhhhc
Q psy18231 431 -ILTCSTDECLRLFDKATGELLEEYK 455 (540)
Q Consensus 431 -l~~~~~dg~i~i~d~~~~~~~~~~~ 455 (540)
++-+-.-|.|.||++++|..+..+.
T Consensus 382 LvIyaprRg~lEvW~~~~g~Rv~a~~ 407 (415)
T PF14655_consen 382 LVIYAPRRGILEVWSMRQGPRVAAFN 407 (415)
T ss_pred EEEEeccCCeEEEEecCCCCEEEEEE
Confidence 3335567889999998887766554
|
|
| >KOG4499|consensus | Back alignment and domain information |
|---|
Probab=95.02 E-value=2 Score=36.84 Aligned_cols=87 Identities=17% Similarity=0.195 Sum_probs=57.9
Q ss_pred EEEecC---CeeEeeeCCCeEEEEe--CCCCc-----eEEeeeC------CceEEEEEecCCcEEEeecCCCeEEEEecc
Q psy18231 383 SVHVSD---HEILTASLDCRIRRYD--IRTGN-----LVTDYVG------EPIVDACFTRDCQCILTCSTDECLRLFDKA 446 (540)
Q Consensus 383 ~l~~~~---~~l~~~~~dg~i~iwd--~~~~~-----~~~~~~~------~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~ 446 (540)
.++|+. .+.++-+.+-+|.-|| ..+|. .+..+.. ..--.+++..+|++.++.-..++|..+|..
T Consensus 162 gl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~ 241 (310)
T KOG4499|consen 162 GLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPT 241 (310)
T ss_pred cccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCC
Confidence 455544 3444555666676666 44443 2333321 122345556789999998899999999999
Q ss_pred ccchhhhhccCcCCcceEEEEecCC
Q psy18231 447 TGELLEEYKGHKSGDFRIECCLDSK 471 (540)
Q Consensus 447 ~~~~~~~~~~~~~~v~~~~~~~s~~ 471 (540)
+|+.+.+++-....+++. ||--.
T Consensus 242 tGK~L~eiklPt~qitsc--cFgGk 264 (310)
T KOG4499|consen 242 TGKILLEIKLPTPQITSC--CFGGK 264 (310)
T ss_pred CCcEEEEEEcCCCceEEE--EecCC
Confidence 999999999888877766 77543
|
|
| >KOG1916|consensus | Back alignment and domain information |
|---|
Probab=94.91 E-value=0.027 Score=57.04 Aligned_cols=114 Identities=11% Similarity=0.108 Sum_probs=67.7
Q ss_pred eeecCeEEEEeCC-CCCEEEEeeCCCcEEEEcCC--CCeeEEEe-----ecCCcceeEEEEee---CCCeEEEeeCCCeE
Q psy18231 162 FVLSGLMHTRFPV-DGSYCLTCGSDKKIKLWNPY--RNLLLKTY-----GGHAHEVNDATAAC---DSSQIASGASDKSV 230 (540)
Q Consensus 162 ~h~~~v~~v~~sp-dg~~lat~~~dg~i~iwd~~--~~~~~~~~-----~~h~~~v~~l~~sp---~~~~l~s~s~dg~i 230 (540)
+..+.|-.+.|.. +-..++ -.-|.+.||++. .|+....+ ......+.-+.|.| +.-++..+-.+++|
T Consensus 130 gf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~i 207 (1283)
T KOG1916|consen 130 GFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGGEI 207 (1283)
T ss_pred cCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCCCce
Confidence 4556677777742 111222 223667788764 44433322 22234445555655 66677777788899
Q ss_pred EEEEcCCCceeEeccccCCceeEEE-----------ECCCCCEEEEecCCCcEEEEEec
Q psy18231 231 ILWEVTTGQPVRRWREHASKVTCVK-----------FNEDSSVVISGSQDNTVMMWDVK 278 (540)
Q Consensus 231 ~iwd~~~~~~~~~~~~h~~~v~~~~-----------~~~~~~~l~s~~~dg~i~iwd~~ 278 (540)
++..++.... ..+.+|...+..++ .+|||+.++.++.||.+++|.+.
T Consensus 208 ~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiy 265 (1283)
T KOG1916|consen 208 RLLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIY 265 (1283)
T ss_pred eEeeechHHH-HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeeee
Confidence 8877654332 34556776666555 46777777777778877777653
|
|
| >TIGR02151 IPP_isom_2 isopentenyl-diphosphate delta-isomerase, type 2 | Back alignment and domain information |
|---|
Probab=94.90 E-value=0.071 Score=49.96 Aligned_cols=99 Identities=11% Similarity=0.110 Sum_probs=63.3
Q ss_pred eecCCceEEeccCCCCCHHHHH------HHHHcCCCEEEeeeeecccccccchhh--ccccccCCCCCCEEEEE-----e
Q psy18231 12 TLLKNLKHCDSTLWTSKLNFRQ------LVRSHNVDLCFTPMIIADSFIKSSKAR--NNEFSTSPEDTPLVVQF-----A 78 (540)
Q Consensus 12 ~~~~~~~~~ap~~~~~~~~~r~------~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~q~-----~ 78 (540)
..++.|++.|||+|-+...++- .++++|..+.++.. ...+...+.. ...+.....+.|++.-+ .
T Consensus 50 ~~l~~Pi~iaaMtGg~~~~~~in~~La~~a~~~g~~~~~Gs~---~~~~~~~~~~~~~~~vr~~~~~~p~i~nl~~~~~~ 126 (333)
T TIGR02151 50 KRLKAPFYINAMTGGSEEAGKINRNLARAARELGIPMGVGSQ---RAALKDPETADTFEVVREEAPNGPLIANIGAPQLV 126 (333)
T ss_pred ccccCCEEEeCCCCCchhHHHHHHHHHHHHHHcCCCeEEcCc---hhhccChhhHhHHHHHHHhCCCCcEEeecCchhhc
Confidence 3478899999999999555544 99999999988865 3334433322 12222224577777744 3
Q ss_pred cCChhHHHHHHHHhcCCCCeEeeccCCCceEEEeccc
Q psy18231 79 SNNHDDFVRATQYVAPHCNGVDLNCGCPQRWAIKEGY 115 (540)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~id~~~gc~~~~~~~~g~ 115 (540)
..+++++.++.+++.. +.+.++..|++......|.
T Consensus 127 ~~~~~~~~~~i~~i~a--dal~i~ln~~q~~~~p~g~ 161 (333)
T TIGR02151 127 EGGPEEAQEAIDMIEA--DALAIHLNVLQELVQPEGD 161 (333)
T ss_pred cccHHHHHHHHHHhcC--CCEEEcCcccccccCCCCC
Confidence 4446678888888854 6666677666554444443
|
Isopentenyl-diphosphate delta-isomerase (IPP isomerase) interconverts isopentenyl diphosphate and dimethylallyl diphosphate. This model represents the type 2 enzyme. FMN, NADPH, and Mg2+ are required by this form, which lacks homology to the type 1 enzyme (TIGR02150). IPP is precursor to many compounds, including enzyme cofactors, sterols, and isoprenoids. |
| >PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation | Back alignment and domain information |
|---|
Probab=94.79 E-value=0.77 Score=41.25 Aligned_cols=110 Identities=11% Similarity=0.065 Sum_probs=67.0
Q ss_pred ceEEEEEecCCcEEEeec---CCCeEEEEeccccchhhhh-ccCcCCcceEEEEecCCCCeEEEeeCCCcEEEEE-ecCC
Q psy18231 418 PIVDACFTRDCQCILTCS---TDECLRLFDKATGELLEEY-KGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQ-LVDS 492 (540)
Q Consensus 418 ~i~~~~~sp~~~~l~~~~---~dg~i~i~d~~~~~~~~~~-~~~~~~v~~~~~~~s~~~~~l~s~s~dg~i~iwd-~~~~ 492 (540)
.+.+.+++++++.++... ....++++.. +...... .+. .+... .|++++...+....+...+++. ..++
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~--~~~~~~~~~g~--~l~~P--S~d~~g~~W~v~~~~~~~~~~~~~~~g 98 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPA--GGPVRPVLTGG--SLTRP--SWDPDGWVWTVDDGSGGVRVVRDSASG 98 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcC--CCcceeeccCC--ccccc--cccCCCCEEEEEcCCCceEEEEecCCC
Confidence 688999999999877665 3344555543 3322222 222 33334 7889987777767677777774 3333
Q ss_pred ccee-EEEecccceeeeEEEEcCCCcEEEeec----CCeeEEEEcc
Q psy18231 493 SQIS-TLIHSVGKAVVNSLCSHPTRKHIMSAC----GNNVKLWTAE 533 (540)
Q Consensus 493 ~~~~-~~~~~~~~~~v~~l~~s~d~~~l~s~~----d~~i~iw~~~ 533 (540)
+... .+....-.+.|+.+.+||||..++... ++.|.+=-+.
T Consensus 99 ~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~ 144 (253)
T PF10647_consen 99 TGEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVV 144 (253)
T ss_pred cceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEE
Confidence 3322 222111122899999999998887654 5677665543
|
It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues. |
| >cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3 | Back alignment and domain information |
|---|
Probab=94.76 E-value=0.066 Score=50.41 Aligned_cols=113 Identities=14% Similarity=0.091 Sum_probs=65.2
Q ss_pred cceecCCceEEeccCCC-------CCHHHHHHHHHc--CCCEEEeeeeecccccccchhhc-----------c-ccc-cC
Q psy18231 10 RSTLLKNLKHCDSTLWT-------SKLNFRQLVRSH--NVDLCFTPMIIADSFIKSSKARN-----------N-EFS-TS 67 (540)
Q Consensus 10 ~~~~~~~~~~~ap~~~~-------~~~~~r~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~-----------~-~~~-~~ 67 (540)
+++.+++|+++|||... |+.-.+...++. |+++..||.+.....-+..+... + ... .+
T Consensus 8 ~~~~lkNRiv~apm~~~~~~~G~~t~~~~~~y~~~A~gG~GlIi~e~~~v~~~~~~~~~~~~l~~d~~i~~~~~l~~~vh 87 (343)
T cd04734 8 GHLTLRNRIVSTAHATNYAEDGLPSERYIAYHEERARGGAGLIITEGSSVHPSDSPAFGNLNASDDEIIPGFRRLAEAVH 87 (343)
T ss_pred CCEEecCCeEECCcccccccCCCCCHHHHHHHHHHHhCCCCEEEEeeeeeCCcccCCCCccccCCHHHHHHHHHHHHHHH
Confidence 46889999999999622 444444343333 78999999876543211111100 0 000 13
Q ss_pred CCCCCEEEEEecC--------------------------C------------hhHHHHHHHHhc-CCCCeEeecc--CC-
Q psy18231 68 PEDTPLVVQFASN--------------------------N------------HDDFVRATQYVA-PHCNGVDLNC--GC- 105 (540)
Q Consensus 68 ~~~~~~~~q~~~~--------------------------~------------~~~~~~~~~~~~-~~~~~id~~~--gc- 105 (540)
....++++|+.=. . .+++++||+... .++|+|++|+ ||
T Consensus 88 ~~g~~~~~Ql~H~G~~~~~~~~~~~~~~ps~~~~~~~~~~~~~mt~~eI~~ii~~f~~AA~ra~~aGfDgVeih~ahGyL 167 (343)
T cd04734 88 AHGAVIMIQLTHLGRRGDGDGSWLPPLAPSAVPEPRHRAVPKAMEEEDIEEIIAAFADAARRCQAGGLDGVELQAAHGHL 167 (343)
T ss_pred hcCCeEEEeccCCCcCcCcccCCCcccCCCCCCCCCCCCCCCcCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEccccchH
Confidence 4566788886410 0 124666777644 4999999999 64
Q ss_pred ------CceEEEeccccceeccc
Q psy18231 106 ------PQRWAIKEGYGCALLSK 122 (540)
Q Consensus 106 ------~~~~~~~~g~g~~l~~~ 122 (540)
|..-...+.+|..|...
T Consensus 168 l~qFlsp~~N~RtD~yGGslenR 190 (343)
T cd04734 168 IDQFLSPLTNRRTDEYGGSLENR 190 (343)
T ss_pred HHHhhCCCcCCCCCcCCCCHHHH
Confidence 44334445566666544
|
Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase. |
| >PRK08649 inosine 5-monophosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=94.73 E-value=0.016 Score=54.53 Aligned_cols=35 Identities=0% Similarity=-0.317 Sum_probs=30.9
Q ss_pred ceecCCceEEeccCCCCCHHHHHHHHHcCC-CEEEe
Q psy18231 11 STLLKNLKHCDSTLWTSKLNFRQLVRSHNV-DLCFT 45 (540)
Q Consensus 11 ~~~~~~~~~~ap~~~~~~~~~r~~~~~~~~-~~~~~ 45 (540)
.+.++.++++|||.++|+.+||.+++++|+ ++...
T Consensus 43 ~~~i~~Piv~a~M~gVt~~~la~avs~~GglGvl~~ 78 (368)
T PRK08649 43 AYRFEIPIIASPMDAVVSPETAIELGKLGGLGVLNL 78 (368)
T ss_pred ceeccCcEeccCCcccCCHHHHHHHHhCCCceEEee
Confidence 456788999999999999999999999987 67663
|
|
| >TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118 | Back alignment and domain information |
|---|
Probab=94.72 E-value=3.1 Score=37.50 Aligned_cols=67 Identities=9% Similarity=0.142 Sum_probs=48.8
Q ss_pred EeeeCCCeEEEEeCCCCceEEeeeC----CceEEEEEec------CCcEEEeecCCCeEEEEeccccchhhhhccCcC
Q psy18231 392 LTASLDCRIRRYDIRTGNLVTDYVG----EPIVDACFTR------DCQCILTCSTDECLRLFDKATGELLEEYKGHKS 459 (540)
Q Consensus 392 ~~~~~dg~i~iwd~~~~~~~~~~~~----~~i~~~~~sp------~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~ 459 (540)
+.+..-|.|-+||+. ++.++++.. ..-+.++..| .|.+|+--..||+|..||..+++.+..+....+
T Consensus 216 v~G~G~G~VdvFd~~-G~l~~r~as~g~LNaPWG~a~APa~FG~~sg~lLVGNFGDG~InaFD~~sG~~~g~L~~~~G 292 (336)
T TIGR03118 216 VAGAGLGYVNVFTLN-GQLLRRVASSGRLNAPWGLAIAPESFGSLSGALLVGNFGDGTINAYDPQSGAQLGQLLDPDN 292 (336)
T ss_pred ccCCCcceEEEEcCC-CcEEEEeccCCcccCCceeeeChhhhCCCCCCeEEeecCCceeEEecCCCCceeeeecCCCC
Confidence 344556889999986 777777753 3456677765 567777777799999999999987777665443
|
This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus. |
| >PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length | Back alignment and domain information |
|---|
Probab=94.62 E-value=0.86 Score=46.02 Aligned_cols=110 Identities=14% Similarity=0.215 Sum_probs=74.5
Q ss_pred eEEEEeCCCCCEEEEeeCCCcEEEEcCCCCeeEEEee-cCCcceeEEEEee--CCCeEEEeeCCCeEEEEEcC-----CC
Q psy18231 167 LMHTRFPVDGSYCLTCGSDKKIKLWNPYRNLLLKTYG-GHAHEVNDATAAC--DSSQIASGASDKSVILWEVT-----TG 238 (540)
Q Consensus 167 v~~v~~spdg~~lat~~~dg~i~iwd~~~~~~~~~~~-~h~~~v~~l~~sp--~~~~l~s~s~dg~i~iwd~~-----~~ 238 (540)
.+-+.-|.-++..++-+...++.|||...+....+-. ...+.|.++.|.. +++.+++.+..+.|.++.-. ..
T Consensus 32 ~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~ 111 (631)
T PF12234_consen 32 PSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNK 111 (631)
T ss_pred cceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcC
Confidence 4444445555555555556789999998886443322 3478899999964 89999999999999998532 11
Q ss_pred ----ceeEe--ccccC-CceeEEEECCCCCEEEEecCCCcEEEEEec
Q psy18231 239 ----QPVRR--WREHA-SKVTCVKFNEDSSVVISGSQDNTVMMWDVK 278 (540)
Q Consensus 239 ----~~~~~--~~~h~-~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~ 278 (540)
..+.. +..|+ .+|.+..|.++|.+++.+| +.+.|+|-.
T Consensus 112 ~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sG--Nqlfv~dk~ 156 (631)
T PF12234_consen 112 GPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSG--NQLFVFDKW 156 (631)
T ss_pred CcccceeEEEEeecCCCCCccceeEecCCeEEEEeC--CEEEEECCC
Confidence 22222 23444 6899999999997666544 578888643
|
This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits. |
| >KOG3630|consensus | Back alignment and domain information |
|---|
Probab=94.50 E-value=0.56 Score=49.38 Aligned_cols=97 Identities=7% Similarity=-0.043 Sum_probs=64.0
Q ss_pred ccEEEEEecC---CeeEeeeCCCeEEEEeCCCCce-EEeee-CCceEEEEEecCCcEEEeecCCCeEEEEeccccchhhh
Q psy18231 379 DSITSVHVSD---HEILTASLDCRIRRYDIRTGNL-VTDYV-GEPIVDACFTRDCQCILTCSTDECLRLFDKATGELLEE 453 (540)
Q Consensus 379 ~~v~~l~~~~---~~l~~~~~dg~i~iwd~~~~~~-~~~~~-~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~ 453 (540)
....++.|+| ...++...|+.|++..+..... +..+. ....++++|+|.|+.+++|...|++.-|-. +++....
T Consensus 156 vf~~~~~wnP~vp~n~av~l~dlsl~V~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P-~leik~~ 234 (1405)
T KOG3630|consen 156 VFQLKNVWNPLVPLNSAVDLSDLSLRVKSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEP-SLEIKSE 234 (1405)
T ss_pred cccccccccCCccchhhhhccccchhhhhhhhhhhhhcccCcccceeeEEeccccceeeEecCCCeEEEeec-ccceeec
Confidence 3445677887 6677888899999887653322 23322 357899999999999999999999988864 3333333
Q ss_pred hccC----cCCcceEEEEecCCCCeEEEe
Q psy18231 454 YKGH----KSGDFRIECCLDSKDSQIFCG 478 (540)
Q Consensus 454 ~~~~----~~~v~~~~~~~s~~~~~l~s~ 478 (540)
+.+. ...|.++ +|-....++++-
T Consensus 235 ip~Pp~~e~yrvl~v--~Wl~t~eflvvy 261 (1405)
T KOG3630|consen 235 IPEPPVEENYRVLSV--TWLSTQEFLVVY 261 (1405)
T ss_pred ccCCCcCCCcceeEE--EEecceeEEEEe
Confidence 3221 2334444 776666666643
|
|
| >PRK13684 Ycf48-like protein; Provisional | Back alignment and domain information |
|---|
Probab=94.31 E-value=4.6 Score=38.09 Aligned_cols=152 Identities=9% Similarity=0.060 Sum_probs=0.0
Q ss_pred cCeEEEEeCCCCCEEEEeeCCCcEEEEcCCCCeeEEEeecCCcceeEEEEeeCCCeEEEeeCCCeEEEEEcCCCceeEec
Q psy18231 165 SGLMHTRFPVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPVRRW 244 (540)
Q Consensus 165 ~~v~~v~~spdg~~lat~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~ 244 (540)
+.+..+.+.|++.+++++......+.++-....-...-..-...++++.+.++++.++.+.. |.+.+=+...|..-...
T Consensus 173 g~~~~i~~~~~g~~v~~g~~G~i~~s~~~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg~~-G~~~~~s~d~G~sW~~~ 251 (334)
T PRK13684 173 GVVRNLRRSPDGKYVAVSSRGNFYSTWEPGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLARG-GQIRFNDPDDLESWSKP 251 (334)
T ss_pred ceEEEEEECCCCeEEEEeCCceEEEEcCCCCCeEEEeeCCCcccceeeeEcCCCCEEEEecC-CEEEEccCCCCCccccc
Q ss_pred ccc----CCceeEEEECCCCCEEEEecCCCcEEEEEecCCCCCCcchhhhhHhhhhcCCceeEEEEeecccccccccCce
Q psy18231 245 REH----ASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHLSNGLL 320 (540)
Q Consensus 245 ~~h----~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (540)
..+ ...+..+.+.+++. ++.++.+|.+..=.-....-....
T Consensus 252 ~~~~~~~~~~l~~v~~~~~~~-~~~~G~~G~v~~S~d~G~tW~~~~---------------------------------- 296 (334)
T PRK13684 252 IIPEITNGYGYLDLAYRTPGE-IWAGGGNGTLLVSKDGGKTWEKDP---------------------------------- 296 (334)
T ss_pred cCCccccccceeeEEEcCCCC-EEEEcCCCeEEEeCCCCCCCeECC----------------------------------
Q ss_pred eeEEEeeeecccccceeeeeeccceeEEEeecccceecccccccccccchhhhhhcccccEEEEEecC-CeeEeeeCCCe
Q psy18231 321 TKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEARDSITSVHVSD-HEILTASLDCR 399 (540)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~-~~l~~~~~dg~ 399 (540)
....-......+.+.. +..+..+..|.
T Consensus 297 ----------------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~G~~G~ 324 (334)
T PRK13684 297 ----------------------------------------------------VGEEVPSNFYKIVFLDPEKGFVLGQRGV 324 (334)
T ss_pred ----------------------------------------------------cCCCCCcceEEEEEeCCCceEEECCCce
Q ss_pred EEEEe
Q psy18231 400 IRRYD 404 (540)
Q Consensus 400 i~iwd 404 (540)
|..|+
T Consensus 325 il~~~ 329 (334)
T PRK13684 325 LLRYV 329 (334)
T ss_pred EEEec
|
|
| >PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation | Back alignment and domain information |
|---|
Probab=94.27 E-value=1.7 Score=39.08 Aligned_cols=126 Identities=17% Similarity=0.131 Sum_probs=75.9
Q ss_pred ccceeeeecccccceeeeeecCeEEEEeCCCCCEEEEeeCCCcEEEEc-CCCCeeE-EEee--cCCcceeEEEEeeCCCe
Q psy18231 145 KEWSIRVYRPLTVNRELFVLSGLMHTRFPVDGSYCLTCGSDKKIKLWN-PYRNLLL-KTYG--GHAHEVNDATAACDSSQ 220 (540)
Q Consensus 145 ~~~~i~~~~~~~~~~~~~h~~~v~~v~~spdg~~lat~~~dg~i~iwd-~~~~~~~-~~~~--~h~~~v~~l~~sp~~~~ 220 (540)
....+..+..........-...+..-.|++++...+....+...+++. ..++... ..+. .-.+.|..+.+||||..
T Consensus 46 ~~~~L~~~~~~~~~~~~~~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~~~~v~~~~~~~~I~~l~vSpDG~R 125 (253)
T PF10647_consen 46 GGRSLYVGPAGGPVRPVLTGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGEPVEVDWPGLRGRITALRVSPDGTR 125 (253)
T ss_pred CCCEEEEEcCCCcceeeccCCccccccccCCCCEEEEEcCCCceEEEEecCCCcceeEEecccccCCceEEEEECCCCcE
Confidence 334455554443333322334788889999987777666666767763 3333222 1121 11228999999999999
Q ss_pred EEEee---CCCeEEEEEcC---CC------ceeEeccccCCceeEEEECCCCCEEEEecCCC
Q psy18231 221 IASGA---SDKSVILWEVT---TG------QPVRRWREHASKVTCVKFNEDSSVVISGSQDN 270 (540)
Q Consensus 221 l~s~s---~dg~i~iwd~~---~~------~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg 270 (540)
+|... .++.|.+=-+. .+ ............+..+.|.+++.+++.+...+
T Consensus 126 vA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~V~~~~~~ 187 (253)
T PF10647_consen 126 VAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTLVVLGRSAG 187 (253)
T ss_pred EEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCEEEEEeCCCC
Confidence 88765 34677666543 22 11122223356889999999988777665544
|
It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues. |
| >PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins | Back alignment and domain information |
|---|
Probab=94.24 E-value=0.16 Score=30.42 Aligned_cols=33 Identities=12% Similarity=0.097 Sum_probs=27.4
Q ss_pred eeeeEEEEcCCC---cEEEeec-CCeeEEEEcccccC
Q psy18231 505 AVVNSLCSHPTR---KHIMSAC-GNNVKLWTAEEDYG 537 (540)
Q Consensus 505 ~~v~~l~~s~d~---~~l~s~~-d~~i~iw~~~~~~~ 537 (540)
+.|.++.|||+. .+|+.+- -+.|.|+|+.+++.
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~f~ 37 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSNFM 37 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccCcc
Confidence 468999999854 4888888 89999999997664
|
It contains a characteristic DLL sequence motif. |
| >cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=94.17 E-value=0.21 Score=46.53 Aligned_cols=85 Identities=11% Similarity=0.027 Sum_probs=58.3
Q ss_pred cceecCCceEEeccCCCCCHHHHHHHHHcCC-CEEEeeeeecccccccchhhccccccCCCCCCEEEEEecCChhHHHHH
Q psy18231 10 RSTLLKNLKHCDSTLWTSKLNFRQLVRSHNV-DLCFTPMIIADSFIKSSKARNNEFSTSPEDTPLVVQFASNNHDDFVRA 88 (540)
Q Consensus 10 ~~~~~~~~~~~ap~~~~~~~~~r~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~ 88 (540)
+.+.++.|++.|||.++|+..+...+.+.|+ ++...+| ...++.+ ..+.. .+.+.+.+..+..++....+
T Consensus 29 ~~~~l~~Piv~apM~~vt~~~ma~ava~~GglGvi~~~~-~~~~~~~----~i~~v----k~~l~v~~~~~~~~~~~~~~ 99 (325)
T cd00381 29 KNITLNIPLVSAPMDTVTESEMAIAMARLGGIGVIHRNM-SIEEQAE----EVRKV----KGRLLVGAAVGTREDDKERA 99 (325)
T ss_pred CccccCCCEEecCCCcCCcHHHHHHHHHCCCEEEEeCCC-CHHHHHH----HHHHh----ccCceEEEecCCChhHHHHH
Confidence 3466788999999999999999999999976 7766655 2222211 11111 13456667777777777777
Q ss_pred HHHhcCCCCeEeecc
Q psy18231 89 TQYVAPHCNGVDLNC 103 (540)
Q Consensus 89 ~~~~~~~~~~id~~~ 103 (540)
..+++.+.+.|.++.
T Consensus 100 ~~l~eagv~~I~vd~ 114 (325)
T cd00381 100 EALVEAGVDVIVIDS 114 (325)
T ss_pred HHHHhcCCCEEEEEC
Confidence 777777888776554
|
IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents. |
| >cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins | Back alignment and domain information |
|---|
Probab=94.08 E-value=0.29 Score=45.72 Aligned_cols=94 Identities=12% Similarity=0.176 Sum_probs=60.5
Q ss_pred ceecCCceEEe--ccCCCCCHHHHHHHHHcCCCEEEeeeeecccccc-cchh-h--------------------------
Q psy18231 11 STLLKNLKHCD--STLWTSKLNFRQLVRSHNVDLCFTPMIIADSFIK-SSKA-R-------------------------- 60 (540)
Q Consensus 11 ~~~~~~~~~~a--p~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~-------------------------- 60 (540)
++.+++++++| |...-.. -++. +...|++-+.+.-++.....+ +++. +
T Consensus 8 Gl~l~nPv~~ASg~~~~~~e-~~~~-~~~~G~Gavv~ktit~~~~~~~gn~~pr~~~~~~~~~~~~~~in~~g~~n~g~~ 85 (325)
T cd04739 8 GLSLKNPLVASASPLSRNLD-NIRR-LEDAGAGAIVLPSLFEEQIEREAQELDRFLTYGSSFAEALSYFPEYGRYNLGPE 85 (325)
T ss_pred CEecCCCCEeCCcCCCCCHH-HHHH-HHHCCCcEEEecccchhhhhhcCCCCCceEeecccCcCcccccccccccCcCHH
Confidence 57889999996 5443222 3343 556677777777666442111 0000 0
Q ss_pred --cccc-cc-CCCCCCEEEEEecCChhHHHHHHHHhcC-CCCeEeeccCCC
Q psy18231 61 --NNEF-ST-SPEDTPLVVQFASNNHDDFVRATQYVAP-HCNGVDLNCGCP 106 (540)
Q Consensus 61 --~~~~-~~-~~~~~~~~~q~~~~~~~~~~~~~~~~~~-~~~~id~~~gc~ 106 (540)
...+ +. ..-+.|+++|+.|.+++++.++++.+++ ++|.|++|++||
T Consensus 86 ~~~~~i~~~~~~~~~pvi~si~g~~~~~~~~~a~~~~~~gad~iElN~s~~ 136 (325)
T cd04739 86 EYLELIRRAKRAVSIPVIASLNGVSAGGWVDYARQIEEAGADALELNIYAL 136 (325)
T ss_pred HHHHHHHHHHhccCCeEEEEeCCCCHHHHHHHHHHHHhcCCCEEEEeCCCC
Confidence 0000 00 1125799999999999999999998776 789999999995
|
DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive. |
| >COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=94.01 E-value=0.87 Score=43.63 Aligned_cols=141 Identities=18% Similarity=0.247 Sum_probs=88.4
Q ss_pred eEeeeCCCeEEEEeCCCCceEEeeeCCceEEEEEecCCc--------EEEeecCCCeEEEEeccc-cchhh-----hhcc
Q psy18231 391 ILTASLDCRIRRYDIRTGNLVTDYVGEPIVDACFTRDCQ--------CILTCSTDECLRLFDKAT-GELLE-----EYKG 456 (540)
Q Consensus 391 l~~~~~dg~i~iwd~~~~~~~~~~~~~~i~~~~~sp~~~--------~l~~~~~dg~i~i~d~~~-~~~~~-----~~~~ 456 (540)
+..+.....++-.|++-|+.+....-+.-.-+.|.|+.+ .|+ |-.+..|.-.|.+- |..+. .+.+
T Consensus 483 ~~dg~~~~kLykmDIErGkvveeW~~~ddvvVqy~p~~kf~qmt~eqtlv-GlS~~svFrIDPR~~gNKi~v~esKdY~t 561 (776)
T COG5167 483 YLDGGERDKLYKMDIERGKVVEEWDLKDDVVVQYNPYFKFQQMTDEQTLV-GLSDYSVFRIDPRARGNKIKVVESKDYKT 561 (776)
T ss_pred EecCCCcccceeeecccceeeeEeecCCcceeecCCchhHHhcCccceEE-eecccceEEecccccCCceeeeeehhccc
Confidence 344556677888888999988888754333777877432 343 33444444445432 22111 1111
Q ss_pred CcCCcceEEEEecCCCCeEEEeeCCCcEEEEEecCCcceeEEEecccceeeeEEEEcCCCcEEEeecCCeeEEEEccccc
Q psy18231 457 HKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDY 536 (540)
Q Consensus 457 ~~~~v~~~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~d~~i~iw~~~~~~ 536 (540)
... ..+ .......++|.||..|.|++||.-.-+-...+. +-...|..+..+.+|+++++.+...+.+-|+.-.+
T Consensus 562 Kn~-Fss---~~tTesGyIa~as~kGDirLyDRig~rAKtalP--~lG~aIk~idvta~Gk~ilaTCk~yllL~d~~ik~ 635 (776)
T COG5167 562 KNK-FSS---GMTTESGYIAAASRKGDIRLYDRIGKRAKTALP--GLGDAIKHIDVTANGKHILATCKNYLLLTDVPIKY 635 (776)
T ss_pred ccc-ccc---cccccCceEEEecCCCceeeehhhcchhhhcCc--ccccceeeeEeecCCcEEEEeecceEEEEeccccc
Confidence 111 111 122334589999999999999943333333344 66788999999999999998888888888887655
Q ss_pred CC
Q psy18231 537 GQ 538 (540)
Q Consensus 537 ~~ 538 (540)
++
T Consensus 636 g~ 637 (776)
T COG5167 636 GQ 637 (776)
T ss_pred CC
Confidence 43
|
|
| >PRK10115 protease 2; Provisional | Back alignment and domain information |
|---|
Probab=93.96 E-value=9.5 Score=40.07 Aligned_cols=72 Identities=10% Similarity=0.078 Sum_probs=46.4
Q ss_pred cceeEEEEeeCCCeEEEeeC-----CCeEEEEEcCCCceeEeccccCCceeEEEECCCCCEEEEecCC------CcEEEE
Q psy18231 207 HEVNDATAACDSSQIASGAS-----DKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQD------NTVMMW 275 (540)
Q Consensus 207 ~~v~~l~~sp~~~~l~s~s~-----dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d------g~i~iw 275 (540)
-.+..+.++||+++|+.+.. ..+|++-|+.+|+.+...-.... ..++|.+|++.|+....+ ..|..+
T Consensus 127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~~--~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h 204 (686)
T PRK10115 127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNVE--PSFVWANDSWTFYYVRKHPVTLLPYQVWRH 204 (686)
T ss_pred EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCcc--eEEEEeeCCCEEEEEEecCCCCCCCEEEEE
Confidence 44667889999998876533 24688999988864322211221 559999998866655432 245666
Q ss_pred EecCC
Q psy18231 276 DVKSR 280 (540)
Q Consensus 276 d~~~~ 280 (540)
++.++
T Consensus 205 ~lgt~ 209 (686)
T PRK10115 205 TIGTP 209 (686)
T ss_pred ECCCC
Confidence 66655
|
|
| >KOG1916|consensus | Back alignment and domain information |
|---|
Probab=93.85 E-value=0.15 Score=51.97 Aligned_cols=154 Identities=12% Similarity=0.122 Sum_probs=87.7
Q ss_pred hhcccccEEEEEecC---CeeEeeeCCCeEEEEeCC--CCceEEee-------eCCceEEEEEec---CCcEEEeecCCC
Q psy18231 374 LKEARDSITSVHVSD---HEILTASLDCRIRRYDIR--TGNLVTDY-------VGEPIVDACFTR---DCQCILTCSTDE 438 (540)
Q Consensus 374 ~~~~~~~v~~l~~~~---~~l~~~~~dg~i~iwd~~--~~~~~~~~-------~~~~i~~~~~sp---~~~~l~~~~~dg 438 (540)
.++..+.+-.+.|-. ..+. -.-|.+.+||++ .|+....+ .+..+.-+.|.| +..++-.+-.++
T Consensus 128 ~kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~ 205 (1283)
T KOG1916|consen 128 AKGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGG 205 (1283)
T ss_pred HhcCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCCC
Confidence 445566666666643 1111 233668888876 34332222 123444445544 666777777889
Q ss_pred eEEEEeccccchhhhhccCcCCcceEE---------EEecCCCCeEEEeeCCCcEEEEEec-CCc----ceeEEEecccc
Q psy18231 439 CLRLFDKATGELLEEYKGHKSGDFRIE---------CCLDSKDSQIFCGSSDGKIYKWQLV-DSS----QISTLIHSVGK 504 (540)
Q Consensus 439 ~i~i~d~~~~~~~~~~~~~~~~v~~~~---------~~~s~~~~~l~s~s~dg~i~iwd~~-~~~----~~~~~~~~~~~ 504 (540)
.+++.+...... ..+.+|...+..++ -..||||..+|.+..||.+++|.+. +|+ ++...+ .|.
T Consensus 206 ~i~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhewk--phd 282 (1283)
T KOG1916|consen 206 EIRLLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYITGKIVHRCLHEWK--PHD 282 (1283)
T ss_pred ceeEeeechHHH-HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeeeeeeccccHhhhhccC--CCC
Confidence 998877654332 55566776554331 1478999999999999999998763 232 233333 444
Q ss_pred -eeeeEEEEcCC---------CcEEEeec--CCeeEEEEc
Q psy18231 505 -AVVNSLCSHPT---------RKHIMSAC--GNNVKLWTA 532 (540)
Q Consensus 505 -~~v~~l~~s~d---------~~~l~s~~--d~~i~iw~~ 532 (540)
.+-.|.-|..+ -.++++++ ...+++|.-
T Consensus 283 ~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~ 322 (1283)
T KOG1916|consen 283 KHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAE 322 (1283)
T ss_pred CCCceeeeeccccccCCccceeEEEEecccCCcceeEeec
Confidence 22222223221 13455555 678999974
|
|
| >PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins | Back alignment and domain information |
|---|
Probab=93.83 E-value=0.28 Score=29.38 Aligned_cols=31 Identities=3% Similarity=0.100 Sum_probs=26.0
Q ss_pred cCeEEEEeCCCC---CEEEEeeCCCcEEEEcCCC
Q psy18231 165 SGLMHTRFPVDG---SYCLTCGSDKKIKLWNPYR 195 (540)
Q Consensus 165 ~~v~~v~~spdg---~~lat~~~dg~i~iwd~~~ 195 (540)
++|.+++|||+. .+|+.+-..|.|.|+|+.+
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 478999999844 5888888889999999885
|
It contains a characteristic DLL sequence motif. |
| >cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2 | Back alignment and domain information |
|---|
Probab=93.79 E-value=0.39 Score=45.00 Aligned_cols=95 Identities=14% Similarity=0.168 Sum_probs=61.3
Q ss_pred ceecCCceEEeccCCCCCH--HHHHHHHHcCCCEEEeeeeecccccccc-hh-----------------------hcccc
Q psy18231 11 STLLKNLKHCDSTLWTSKL--NFRQLVRSHNVDLCFTPMIIADSFIKSS-KA-----------------------RNNEF 64 (540)
Q Consensus 11 ~~~~~~~~~~ap~~~~~~~--~~r~~~~~~~~~~~~~~~~~~~~~~~~~-~~-----------------------~~~~~ 64 (540)
++.+++++.+|- |++.. ..+.+. +.|++.+.+..++...-..+. +. -...+
T Consensus 45 Gl~l~nPi~~As--G~~~~~~~~~~~~-~~G~Gavv~ktit~~~~~gn~~pr~~~~~~~~~~~n~~g~~n~g~~~~~~~l 121 (327)
T cd04738 45 GLTFPNPVGLAA--GFDKNAEAIDALL-ALGFGFVEVGTVTPRPQPGNPKPRLFRLPEDEALINRMGFNNDGADAVAKRL 121 (327)
T ss_pred CEECCCCCEeCc--CCCCCHHHHHHHH-HCCCcEEEEeccCCCCCCCCCCCCEEEccCccceeecCCCCCccHHHHHHHH
Confidence 567888998864 55432 344444 678888888777754211010 00 01111
Q ss_pred ccC-CCCCCEEEEEecCC-------hhHHHHHHHHhcCCCCeEeeccCCCce
Q psy18231 65 STS-PEDTPLVVQFASNN-------HDDFVRATQYVAPHCNGVDLNCGCPQR 108 (540)
Q Consensus 65 ~~~-~~~~~~~~q~~~~~-------~~~~~~~~~~~~~~~~~id~~~gc~~~ 108 (540)
... ..+.|+++|+.+++ .+++++.++.+.+.++.|++|++||..
T Consensus 122 ~~~~~~~~plivsi~g~~~~~~~~~~~d~~~~~~~~~~~ad~ielN~scP~~ 173 (327)
T cd04738 122 KKRRPRGGPLGVNIGKNKDTPLEDAVEDYVIGVRKLGPYADYLVVNVSSPNT 173 (327)
T ss_pred HHhccCCCeEEEEEeCCCCCcccccHHHHHHHHHHHHhhCCEEEEECCCCCC
Confidence 111 24689999999987 577888888777778999999999974
|
DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors. |
| >TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain | Back alignment and domain information |
|---|
Probab=93.68 E-value=6.9 Score=37.54 Aligned_cols=102 Identities=9% Similarity=0.123 Sum_probs=57.1
Q ss_pred cCeEEEEeCCCCCEEEEee-----------CCC-cEEEEcCCC--Ce--eEEEeecCCcceeEEEEeeCCCeEEEeeCCC
Q psy18231 165 SGLMHTRFPVDGSYCLTCG-----------SDK-KIKLWNPYR--NL--LLKTYGGHAHEVNDATAACDSSQIASGASDK 228 (540)
Q Consensus 165 ~~v~~v~~spdg~~lat~~-----------~dg-~i~iwd~~~--~~--~~~~~~~h~~~v~~l~~sp~~~~l~s~s~dg 228 (540)
.....|+|.++|+++++-. ..+ .|.+++-.+ |+ ....+...-.....+++.+++ +++ ++...
T Consensus 14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G-lyV-~~~~~ 91 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG-VYV-ATPPD 91 (367)
T ss_pred CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC-EEE-eCCCe
Confidence 4567889999998776542 223 677775432 32 223343334456889999888 444 44443
Q ss_pred eEEEEEcCCC-----c--ee-Eeccc----cCCceeEEEECCCCCEEEEecC
Q psy18231 229 SVILWEVTTG-----Q--PV-RRWRE----HASKVTCVKFNEDSSVVISGSQ 268 (540)
Q Consensus 229 ~i~iwd~~~~-----~--~~-~~~~~----h~~~v~~~~~~~~~~~l~s~~~ 268 (540)
..++.|.... + .+ ..+.. +......+.|.|||.+.++-+.
T Consensus 92 i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~ 143 (367)
T TIGR02604 92 ILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGN 143 (367)
T ss_pred EEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEeccc
Confidence 3334454321 1 11 11222 2345778999999876665543
|
All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs. |
| >KOG2247|consensus | Back alignment and domain information |
|---|
Probab=93.62 E-value=0.017 Score=54.35 Aligned_cols=152 Identities=11% Similarity=0.126 Sum_probs=100.0
Q ss_pred EEEecC--CeeEeeeCCCeEEEEeCCCCceEEeeeCCceEEEEEecCCcEEE-eecCCCeEEEEeccccchhhhhccCcC
Q psy18231 383 SVHVSD--HEILTASLDCRIRRYDIRTGNLVTDYVGEPIVDACFTRDCQCIL-TCSTDECLRLFDKATGELLEEYKGHKS 459 (540)
Q Consensus 383 ~l~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~i~~~~~sp~~~~l~-~~~~dg~i~i~d~~~~~~~~~~~~~~~ 459 (540)
...|.+ ..++.++.+..+..||-........-.......++|..++..++ .+-..+.+++||+.+.. ..++.....
T Consensus 39 ~~~w~~e~~nlavaca~tiv~~YD~agq~~le~n~tg~aldm~wDkegdvlavlAek~~piylwd~n~ey-tqqLE~gg~ 117 (615)
T KOG2247|consen 39 IHRWRPEGHNLAVACANTIVIYYDKAGQVILELNPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEY-TQQLESGGT 117 (615)
T ss_pred eeeEecCCCceehhhhhhHHHhhhhhcceecccCCchhHhhhhhccccchhhhhhhcCCCeeechhhhhh-HHHHhccCc
Confidence 344554 55888888888999986543333222335566788888776554 45567899999986542 222221111
Q ss_pred CcceEEEEecCCCCeEEEeeCCCcEEEEEecCCcceeEEEecccceeeeEEEEcCCCcEEEeecCC----------eeEE
Q psy18231 460 GDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGN----------NVKL 529 (540)
Q Consensus 460 ~v~~~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~d~----------~i~i 529 (540)
.-.++ ..|++.+..++.+...|.+.|++-.+.+.+...- .|...+++++|.+.+..+..++|. ++.+
T Consensus 118 ~s~sl-l~wsKg~~el~ig~~~gn~viynhgtsR~iiv~G--kh~RRgtq~av~lEd~vil~dcd~~L~v~~qegeta~l 194 (615)
T KOG2247|consen 118 SSKSL-LAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMG--KHQRRGTQIAVTLEDYVILCDCDNTLSVTTQEGETASL 194 (615)
T ss_pred chHHH-HhhccCCccccccccccceEEEeccchhhhhhhc--ccccceeEEEecccceeeecCcHHHHHHhhhccceeee
Confidence 11112 2789999999999999999999987777766664 589999999999877544433243 5666
Q ss_pred EEcccccCC
Q psy18231 530 WTAEEDYGQ 538 (540)
Q Consensus 530 w~~~~~~~~ 538 (540)
+.+...+.+
T Consensus 195 tevggepdn 203 (615)
T KOG2247|consen 195 TEVGGEPDN 203 (615)
T ss_pred eeccCccch
Confidence 666555443
|
|
| >PF15390 DUF4613: Domain of unknown function (DUF4613) | Back alignment and domain information |
|---|
Probab=93.42 E-value=1.8 Score=42.56 Aligned_cols=151 Identities=9% Similarity=0.127 Sum_probs=87.6
Q ss_pred ccccEEEEEecC-CeeE-eee--CCCeEEEEeCCCCceEEeeeCCceEEEEEecC----CcEEEeecCCCeEEEEeccc-
Q psy18231 377 ARDSITSVHVSD-HEIL-TAS--LDCRIRRYDIRTGNLVTDYVGEPIVDACFTRD----CQCILTCSTDECLRLFDKAT- 447 (540)
Q Consensus 377 ~~~~v~~l~~~~-~~l~-~~~--~dg~i~iwd~~~~~~~~~~~~~~i~~~~~sp~----~~~l~~~~~dg~i~i~d~~~- 447 (540)
.-.++..++|.. +.++ +.- .+|.+++=|. +.+..+ +.|..++|.|- -.-|++.-....|.+|-+..
T Consensus 18 AiHPvhGlaWTDGkqVvLT~L~l~~gE~kfGds---~viGqF--EhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s 92 (671)
T PF15390_consen 18 AIHPVHGLAWTDGKQVVLTDLQLHNGEPKFGDS---KVIGQF--EHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPS 92 (671)
T ss_pred hhccccceEecCCCEEEEEeeeeeCCccccCCc---cEeecc--ceeeeeeecCcccCCCCceEEEeccceEEEEEeccC
Confidence 345677888877 3333 321 1233222221 122222 46889999984 33455556678899998752
Q ss_pred ----cchhhhhccC---cCCcceEEEEecCCCCeEEEeeCCCcEEEEEecCCcceeEEEecccceeeeEEEEcCCCcEEE
Q psy18231 448 ----GELLEEYKGH---KSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIM 520 (540)
Q Consensus 448 ----~~~~~~~~~~---~~~v~~~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~ 520 (540)
.+.+..-..+ .-++..-.|.|+|....|+.-.....=.++++........... ...+-|.|.+|.+||+.|+
T Consensus 93 ~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi-~~~G~IhCACWT~DG~RLV 171 (671)
T PF15390_consen 93 TTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADI-KTSGLIHCACWTKDGQRLV 171 (671)
T ss_pred ccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEec-cCCceEEEEEecCcCCEEE
Confidence 2222211111 1223333457999999888776655545677654433222222 4667899999999999988
Q ss_pred eec--CCeeEEEEcc
Q psy18231 521 SAC--GNNVKLWTAE 533 (540)
Q Consensus 521 s~~--d~~i~iw~~~ 533 (540)
.+- .=.-+|||-.
T Consensus 172 VAvGSsLHSyiWd~~ 186 (671)
T PF15390_consen 172 VAVGSSLHSYIWDSA 186 (671)
T ss_pred EEeCCeEEEEEecCc
Confidence 776 3356788753
|
|
| >PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin | Back alignment and domain information |
|---|
Probab=93.38 E-value=0.35 Score=42.14 Aligned_cols=66 Identities=15% Similarity=0.298 Sum_probs=50.5
Q ss_pred ecCCCCeEEEeeCCCcEEEEEecCCcceeEE------Eec------ccceeeeEEEEcCCCcEEEeecCCeeEEEEcc
Q psy18231 468 LDSKDSQIFCGSSDGKIYKWQLVDSSQISTL------IHS------VGKAVVNSLCSHPTRKHIMSACGNNVKLWTAE 533 (540)
Q Consensus 468 ~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~------~~~------~~~~~v~~l~~s~d~~~l~s~~d~~i~iw~~~ 533 (540)
+..++.+|++-+.+|.+++||+.+++.+..- -.. .....|..+.++.+|.-|++-++|..+.|+.+
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~lsng~~y~y~~~ 95 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLSNGDSYSYSPD 95 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEeCCCEEEeccc
Confidence 4467889999999999999999987654322 100 24567899999999998888777778888764
|
These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus |
| >KOG4499|consensus | Back alignment and domain information |
|---|
Probab=93.31 E-value=1.7 Score=37.26 Aligned_cols=93 Identities=10% Similarity=0.031 Sum_probs=66.7
Q ss_pred CeEEEEeCCCCCEEE-EeeCCCcEEEEc--CCCCe-----eEEEeec----CCcceeEEEEeeCCCeEEEeeCCCeEEEE
Q psy18231 166 GLMHTRFPVDGSYCL-TCGSDKKIKLWN--PYRNL-----LLKTYGG----HAHEVNDATAACDSSQIASGASDKSVILW 233 (540)
Q Consensus 166 ~v~~v~~spdg~~la-t~~~dg~i~iwd--~~~~~-----~~~~~~~----h~~~v~~l~~sp~~~~l~s~s~dg~i~iw 233 (540)
--+.++|+.|.+.+. +-+.+-+|.-|| ..+|. .+..++. ..-.--.++..-+|++.+++-..++|.-.
T Consensus 159 IsNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~ 238 (310)
T KOG4499|consen 159 ISNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKV 238 (310)
T ss_pred CCccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEE
Confidence 346788988877665 456677887787 55553 3333322 11112234556688888888888999999
Q ss_pred EcCCCceeEeccccCCceeEEEECC
Q psy18231 234 EVTTGQPVRRWREHASKVTCVKFNE 258 (540)
Q Consensus 234 d~~~~~~~~~~~~h~~~v~~~~~~~ 258 (540)
|..+|+.+..++-....|++++|--
T Consensus 239 dp~tGK~L~eiklPt~qitsccFgG 263 (310)
T KOG4499|consen 239 DPTTGKILLEIKLPTPQITSCCFGG 263 (310)
T ss_pred CCCCCcEEEEEEcCCCceEEEEecC
Confidence 9999999999988899999999954
|
|
| >KOG3630|consensus | Back alignment and domain information |
|---|
Probab=93.11 E-value=0.7 Score=48.73 Aligned_cols=115 Identities=14% Similarity=0.057 Sum_probs=74.6
Q ss_pred CceEEEEEecCCcEEEeecC--CCeEEEEeccccchhh-----hhccC----cCCcceEEEEecCCCCe-EEEeeCCCcE
Q psy18231 417 EPIVDACFTRDCQCILTCST--DECLRLFDKATGELLE-----EYKGH----KSGDFRIECCLDSKDSQ-IFCGSSDGKI 484 (540)
Q Consensus 417 ~~i~~~~~sp~~~~l~~~~~--dg~i~i~d~~~~~~~~-----~~~~~----~~~v~~~~~~~s~~~~~-l~s~s~dg~i 484 (540)
-++..+...+|+...++... +-.|..||+++...-. -+..| ...+..+...|.|.-.. .+....|+.|
T Consensus 101 ~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl 180 (1405)
T KOG3630|consen 101 IPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSL 180 (1405)
T ss_pred ccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccch
Confidence 35677777788766555433 4478999987653221 12222 22344444466665333 5667788999
Q ss_pred EEEEecCCcc-eeEEEecccceeeeEEEEcCCCcEEEeec-CCeeEEEEccc
Q psy18231 485 YKWQLVDSSQ-ISTLIHSVGKAVVNSLCSHPTRKHIMSAC-GNNVKLWTAEE 534 (540)
Q Consensus 485 ~iwd~~~~~~-~~~~~~~~~~~~v~~l~~s~d~~~l~s~~-d~~i~iw~~~~ 534 (540)
++..+..... +..+ .-....++++|+|.|+.++.|. .|++.-|...-
T Consensus 181 ~V~~~~~~~~~v~s~---p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~l 229 (1405)
T KOG3630|consen 181 RVKSTKQLAQNVTSF---PVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSL 229 (1405)
T ss_pred hhhhhhhhhhhhccc---CcccceeeEEeccccceeeEecCCCeEEEeeccc
Confidence 9887654332 3333 3456789999999999999999 99998887643
|
|
| >PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal | Back alignment and domain information |
|---|
Probab=92.98 E-value=3.5 Score=32.14 Aligned_cols=108 Identities=15% Similarity=0.213 Sum_probs=69.9
Q ss_pred EEEeCCCCCEEEEeeCCCcEEEEcCCCC--------eeEEEeecCCcceeEEEEee-----CCCeEEEeeCCCeEEEEEc
Q psy18231 169 HTRFPVDGSYCLTCGSDKKIKLWNPYRN--------LLLKTYGGHAHEVNDATAAC-----DSSQIASGASDKSVILWEV 235 (540)
Q Consensus 169 ~v~~spdg~~lat~~~dg~i~iwd~~~~--------~~~~~~~~h~~~v~~l~~sp-----~~~~l~s~s~dg~i~iwd~ 235 (540)
.-+|.....-|+.++.-|+|.|.+.... ..+..+. -...|++++--+ +...|+.|+ ...+..||+
T Consensus 3 iGkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LN-in~~italaaG~l~~~~~~D~LliGt-~t~llaYDV 80 (136)
T PF14781_consen 3 IGKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLN-INQEITALAAGRLKPDDGRDCLLIGT-QTSLLAYDV 80 (136)
T ss_pred EEEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEE-CCCceEEEEEEecCCCCCcCEEEEec-cceEEEEEc
Confidence 3456666667888888999999987633 2344454 466788876554 234466665 467999999
Q ss_pred CCCceeEeccccCCceeEEEECC----CCCEEEEecCCCcEEEEEecCC
Q psy18231 236 TTGQPVRRWREHASKVTCVKFNE----DSSVVISGSQDNTVMMWDVKSR 280 (540)
Q Consensus 236 ~~~~~~~~~~~h~~~v~~~~~~~----~~~~l~s~~~dg~i~iwd~~~~ 280 (540)
.....+.. +.-.+.|+++.+-. +..+++.|+ +..|.-||.+..
T Consensus 81 ~~N~d~Fy-ke~~DGvn~i~~g~~~~~~~~l~ivGG-ncsi~Gfd~~G~ 127 (136)
T PF14781_consen 81 ENNSDLFY-KEVPDGVNAIVIGKLGDIPSPLVIVGG-NCSIQGFDYEGN 127 (136)
T ss_pred ccCchhhh-hhCccceeEEEEEecCCCCCcEEEECc-eEEEEEeCCCCc
Confidence 88776543 34456788877732 334555544 566777766544
|
|
| >PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes [] | Back alignment and domain information |
|---|
Probab=92.80 E-value=3.7 Score=42.19 Aligned_cols=141 Identities=9% Similarity=0.075 Sum_probs=84.8
Q ss_pred CCeeEeeeCCCeEEEEeCCCCceE------Eee------------------eCCceEEEEEec--CCcEEEeecCCCeEE
Q psy18231 388 DHEILTASLDCRIRRYDIRTGNLV------TDY------------------VGEPIVDACFTR--DCQCILTCSTDECLR 441 (540)
Q Consensus 388 ~~~l~~~~~dg~i~iwd~~~~~~~------~~~------------------~~~~i~~~~~sp--~~~~l~~~~~dg~i~ 441 (540)
.++++++ ..+.|.||+.+.-... ..+ ..|.|+-+.... +...|+++..||.|.
T Consensus 49 ~n~LFiA-~~s~I~Vy~~d~l~~~p~~~p~~~~~t~p~~~~~~D~~~s~~p~PHtIN~i~v~~lg~~EVLl~c~DdG~V~ 127 (717)
T PF08728_consen 49 RNLLFIA-YQSEIYVYDPDGLTQLPSRKPCLRFDTKPEFTSTPDRLISTWPFPHTINFIKVGDLGGEEVLLLCTDDGDVL 127 (717)
T ss_pred CCEEEEE-ECCEEEEEecCCcccccccccccccccCccccccccccccCCCCCceeeEEEecccCCeeEEEEEecCCeEE
Confidence 3555554 4788999988643221 111 014466665443 456788999999999
Q ss_pred EEeccccc-hh-------------------hhhccCcCCcceEEEEec--CCCCeEEEeeCCCcEEEEEecCCc-ceeEE
Q psy18231 442 LFDKATGE-LL-------------------EEYKGHKSGDFRIECCLD--SKDSQIFCGSSDGKIYKWQLVDSS-QISTL 498 (540)
Q Consensus 442 i~d~~~~~-~~-------------------~~~~~~~~~v~~~~~~~s--~~~~~l~s~s~dg~i~iwd~~~~~-~~~~~ 498 (540)
+|.+++-. .+ ..+. -....+.+ +++ ...++||+++....|.||-..... .....
T Consensus 128 ~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGL--dIh~~~~~rlIAVSsNs~~VTVFaf~l~~~r~~~~ 204 (717)
T PF08728_consen 128 AYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGL--DIHDYKKSRLIAVSSNSQEVTVFAFALVDERFYHV 204 (717)
T ss_pred EEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEE--EEEecCcceEEEEecCCceEEEEEEeccccccccc
Confidence 99763210 00 0111 11234555 566 667788888888888887654421 11111
Q ss_pred EecccceeeeEEEEcCCC------cEEEeec-CCeeEEEEc
Q psy18231 499 IHSVGKAVVNSLCSHPTR------KHIMSAC-GNNVKLWTA 532 (540)
Q Consensus 499 ~~~~~~~~v~~l~~s~d~------~~l~s~~-d~~i~iw~~ 532 (540)
....|...|-+|+|-++. .+|++++ .|.+.+|++
T Consensus 205 ~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 205 PSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred cccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 111355668899997654 2788888 999998888
|
RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance []. |
| >KOG2377|consensus | Back alignment and domain information |
|---|
Probab=92.55 E-value=1 Score=42.50 Aligned_cols=116 Identities=10% Similarity=0.145 Sum_probs=78.3
Q ss_pred eecCeEEEEeCCCCCEEEEeeCCCcEEEEcCCCCeeEEE----eecCCcceeEEEEeeCCCeEEEeeCCCeEEEEEcCC-
Q psy18231 163 VLSGLMHTRFPVDGSYCLTCGSDKKIKLWNPYRNLLLKT----YGGHAHEVNDATAACDSSQIASGASDKSVILWEVTT- 237 (540)
Q Consensus 163 h~~~v~~v~~spdg~~lat~~~dg~i~iwd~~~~~~~~~----~~~h~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~- 237 (540)
..++|.++.||+|.+.||+--.+.+|.+.+....+.... -+..+..|....|+.+ .-+|..+..| +-+|-...
T Consensus 65 d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s-~e~A~i~~~G-~e~y~v~pe 142 (657)
T KOG2377|consen 65 DKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSS-TEIAFITDQG-IEFYQVLPE 142 (657)
T ss_pred CCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecC-eeEEEEecCC-eEEEEEchh
Confidence 457899999999999999999999999999754433222 2333556888999855 5566666555 56665543
Q ss_pred CceeEeccccCCceeEEEECCCCCEEEEec--CCCcEEEEEecCC
Q psy18231 238 GQPVRRWREHASKVTCVKFNEDSSVVISGS--QDNTVMMWDVKSR 280 (540)
Q Consensus 238 ~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~--~dg~i~iwd~~~~ 280 (540)
.+.++..+.|.-.|.-..|.++.+.++-++ ..+++.=+-++++
T Consensus 143 krslRlVks~~~nvnWy~yc~et~v~LL~t~~~~n~lnpf~~~~~ 187 (657)
T KOG2377|consen 143 KRSLRLVKSHNLNVNWYMYCPETAVILLSTTVLENVLNPFHFRAG 187 (657)
T ss_pred hhhhhhhhhcccCccEEEEccccceEeeeccccccccccEEEeec
Confidence 344556677888899999999876544333 3344444444443
|
|
| >PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin | Back alignment and domain information |
|---|
Probab=92.21 E-value=1.2 Score=38.95 Aligned_cols=68 Identities=12% Similarity=0.141 Sum_probs=51.4
Q ss_pred ccEEEEEecCCeeEeeeCCCeEEEEeCCCCceEEee----------------eCCceEEEEEecCCcEEEeecCCCeEEE
Q psy18231 379 DSITSVHVSDHEILTASLDCRIRRYDIRTGNLVTDY----------------VGEPIVDACFTRDCQCILTCSTDECLRL 442 (540)
Q Consensus 379 ~~v~~l~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~----------------~~~~i~~~~~sp~~~~l~~~~~dg~i~i 442 (540)
.++..+....+++++-+.+|.+++||+.+++.+..- ....|..+.++.+|.-+++-+ +|..+.
T Consensus 13 s~~~~l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~ 91 (219)
T PF07569_consen 13 SPVSFLECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYS 91 (219)
T ss_pred CceEEEEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEE
Confidence 455567777789999999999999999998765332 224688888888888776654 577888
Q ss_pred Eeccc
Q psy18231 443 FDKAT 447 (540)
Q Consensus 443 ~d~~~ 447 (540)
||..-
T Consensus 92 y~~~L 96 (219)
T PF07569_consen 92 YSPDL 96 (219)
T ss_pred ecccc
Confidence 88643
|
These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus |
| >PLN00033 photosystem II stability/assembly factor; Provisional | Back alignment and domain information |
|---|
Probab=92.05 E-value=12 Score=36.10 Aligned_cols=106 Identities=8% Similarity=0.046 Sum_probs=61.8
Q ss_pred cCeEEEEeCCCCCEEEEeeCCCcEEEEcCCCCee--EEEeecCCcceeEEEEeeCCCeEEEeeCCCeEEEEEcCCCc---
Q psy18231 165 SGLMHTRFPVDGSYCLTCGSDKKIKLWNPYRNLL--LKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQ--- 239 (540)
Q Consensus 165 ~~v~~v~~spdg~~lat~~~dg~i~iwd~~~~~~--~~~~~~h~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~--- 239 (540)
+....+..++||.+++.+..-..++-|| .+.. ...-......++++.|.+++..++++ .+|.+ +|....++
T Consensus 239 Gsf~~v~~~~dG~~~~vg~~G~~~~s~d--~G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g-~~G~l-~~S~d~G~~~~ 314 (398)
T PLN00033 239 GTFSTVNRSPDGDYVAVSSRGNFYLTWE--PGQPYWQPHNRASARRIQNMGWRADGGLWLLT-RGGGL-YVSKGTGLTEE 314 (398)
T ss_pred cceeeEEEcCCCCEEEEECCccEEEecC--CCCcceEEecCCCccceeeeeEcCCCCEEEEe-CCceE-EEecCCCCccc
Confidence 3445567788988888776443333455 3322 11112235678999999998877665 45654 44444553
Q ss_pred --eeEeccc--cCCceeEEEECCCCCEEEEecCCCcEEEE
Q psy18231 240 --PVRRWRE--HASKVTCVKFNEDSSVVISGSQDNTVMMW 275 (540)
Q Consensus 240 --~~~~~~~--h~~~v~~~~~~~~~~~l~s~~~dg~i~iw 275 (540)
....... ....+..+.|.+++..+++ +..|.+...
T Consensus 315 ~~~f~~~~~~~~~~~l~~v~~~~d~~~~a~-G~~G~v~~s 353 (398)
T PLN00033 315 DFDFEEADIKSRGFGILDVGYRSKKEAWAA-GGSGILLRS 353 (398)
T ss_pred ccceeecccCCCCcceEEEEEcCCCcEEEE-ECCCcEEEe
Confidence 2222221 1235889999988776555 457766554
|
|
| >PRK02506 dihydroorotate dehydrogenase 1A; Reviewed | Back alignment and domain information |
|---|
Probab=91.99 E-value=1.3 Score=41.14 Aligned_cols=97 Identities=11% Similarity=0.143 Sum_probs=63.0
Q ss_pred ceecCCceEEeccCCC-CCHHHHHHHHHcCCCEEEeeeeecccccccchhh----------------------cccc---
Q psy18231 11 STLLKNLKHCDSTLWT-SKLNFRQLVRSHNVDLCFTPMIIADSFIKSSKAR----------------------NNEF--- 64 (540)
Q Consensus 11 ~~~~~~~~~~ap~~~~-~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------~~~~--- 64 (540)
++.+++++++|-=..- +...+|. +.+.|++-+.+.-++...-..+.+.+ ...+
T Consensus 8 Gl~l~NPv~~AsG~~~~~~e~~~~-~~~~g~Gavv~ktit~~p~~gn~~pr~~~~~~~~~N~~Gl~n~g~~~~~~~i~~~ 86 (310)
T PRK02506 8 GFKFDNCLMNAAGVYCMTKEELEE-VEASAAGAFVTKSATLEPRPGNPEPRYADTPLGSINSMGLPNLGFDYYLDYVLEL 86 (310)
T ss_pred CEECCCCCEeCCCCCCCCHHHHHH-HHHcCCcEEEeCccCCCCCCCCCCCeEEECcchhhccCCCCCcCHHHHHHHHHHH
Confidence 5788999999843332 2234555 55677777777766654221111100 0011
Q ss_pred ccCCCCCCEEEEEecCChhHHHHHHHHhcC-C-CCeEeeccCCCce
Q psy18231 65 STSPEDTPLVVQFASNNHDDFVRATQYVAP-H-CNGVDLNCGCPQR 108 (540)
Q Consensus 65 ~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~-~-~~~id~~~gc~~~ 108 (540)
.....+.|+++++.|.+++++.+.++.+++ + .|.|.+|..||..
T Consensus 87 ~~~~~~~pvI~Si~G~~~~~~~~~a~~~~~~g~ad~iElN~ScPn~ 132 (310)
T PRK02506 87 QKKGPNKPHFLSVVGLSPEETHTILKKIQASDFNGLVELNLSCPNV 132 (310)
T ss_pred HhhcCCCCEEEEEEeCcHHHHHHHHHHHhhcCCCCEEEEECCCCCC
Confidence 111124899999999999999999988776 4 7999999999963
|
|
| >KOG2377|consensus | Back alignment and domain information |
|---|
Probab=91.80 E-value=5.1 Score=38.15 Aligned_cols=136 Identities=14% Similarity=0.114 Sum_probs=80.8
Q ss_pred EEEEecC-CeeEeeeCCCeEEEEeCCCCc--eEEee---eCCceEEEEEecCCcEEEeecCCCeEEEEeccccchh--hh
Q psy18231 382 TSVHVSD-HEILTASLDCRIRRYDIRTGN--LVTDY---VGEPIVDACFTRDCQCILTCSTDECLRLFDKATGELL--EE 453 (540)
Q Consensus 382 ~~l~~~~-~~l~~~~~dg~i~iwd~~~~~--~~~~~---~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~--~~ 453 (540)
+.+-|+. +..+.+...|.+.-|-..... ....+ ..++|.++.||+|.+.+|+--.+.+|.+++....+.. ..
T Consensus 26 ngvFfDDaNkqlfavrSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~ 105 (657)
T KOG2377|consen 26 NGVFFDDANKQLFAVRSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYT 105 (657)
T ss_pred cceeeccCcceEEEEecCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHH
Confidence 4455655 444444444555555544322 12222 2368999999999999999999999999997443322 22
Q ss_pred hccCcCCcceEEEEecCCCCeEEEeeCCCcEEEEEecCC-cceeEEEecccceeeeEEEEcCCCcEEEe
Q psy18231 454 YKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDS-SQISTLIHSVGKAVVNSLCSHPTRKHIMS 521 (540)
Q Consensus 454 ~~~~~~~v~~~~~~~s~~~~~l~s~s~dg~i~iwd~~~~-~~~~~~~~~~~~~~v~~l~~s~d~~~l~s 521 (540)
.+..........++|+.. .-+|.-+..| +-+|-.... +.++..+ .|+..|+-..|.++.+.+.-
T Consensus 106 ~~ck~k~~~IlGF~W~~s-~e~A~i~~~G-~e~y~v~pekrslRlVk--s~~~nvnWy~yc~et~v~LL 170 (657)
T KOG2377|consen 106 QECKTKNANILGFCWTSS-TEIAFITDQG-IEFYQVLPEKRSLRLVK--SHNLNVNWYMYCPETAVILL 170 (657)
T ss_pred HHhccCcceeEEEEEecC-eeEEEEecCC-eEEEEEchhhhhhhhhh--hcccCccEEEEccccceEee
Confidence 222222233445578765 4566655544 566665433 2334444 67778888888888765443
|
|
| >TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain | Back alignment and domain information |
|---|
Probab=91.78 E-value=9.2 Score=36.70 Aligned_cols=138 Identities=12% Similarity=0.112 Sum_probs=72.0
Q ss_pred ccEEEEEecC-CeeEeeeC------------CC-eEEEEeCCC--Cce--EEeeeC--CceEEEEEecCCcEEEeecCCC
Q psy18231 379 DSITSVHVSD-HEILTASL------------DC-RIRRYDIRT--GNL--VTDYVG--EPIVDACFTRDCQCILTCSTDE 438 (540)
Q Consensus 379 ~~v~~l~~~~-~~l~~~~~------------dg-~i~iwd~~~--~~~--~~~~~~--~~i~~~~~sp~~~~l~~~~~dg 438 (540)
.....++|.+ ..|.++.. .+ .|.+++-.. ++. ...+.. .....+++.++| +++ ++...
T Consensus 14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G-lyV-~~~~~ 91 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG-VYV-ATPPD 91 (367)
T ss_pred CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC-EEE-eCCCe
Confidence 3456778887 45555532 23 677776543 222 223322 456889999998 444 44443
Q ss_pred eEEEEecccc-----c---hhhhhccC----cCCcceEEEEecCCCCeEEEeeCC-------------------CcEEEE
Q psy18231 439 CLRLFDKATG-----E---LLEEYKGH----KSGDFRIECCLDSKDSQIFCGSSD-------------------GKIYKW 487 (540)
Q Consensus 439 ~i~i~d~~~~-----~---~~~~~~~~----~~~v~~~~~~~s~~~~~l~s~s~d-------------------g~i~iw 487 (540)
..++.|.... + .+..+... ......+ ++.|||.+.++-+.. |.|.-+
T Consensus 92 i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l--~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~ 169 (367)
T TIGR02604 92 ILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSL--AWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRY 169 (367)
T ss_pred EEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCc--eECCCCCEEEecccCCCceeccCCCccCcccccCceEEEE
Confidence 3334344211 1 11222221 1223344 789999875544421 345555
Q ss_pred EecCCcceeEEEecccceeeeEEEEcCCCcEEEeec
Q psy18231 488 QLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC 523 (540)
Q Consensus 488 d~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~ 523 (540)
+...++ +..+. ........++|+|+|+++++-.
T Consensus 170 ~pdg~~-~e~~a--~G~rnp~Gl~~d~~G~l~~tdn 202 (367)
T TIGR02604 170 NPDGGK-LRVVA--HGFQNPYGHSVDSWGDVFFCDN 202 (367)
T ss_pred ecCCCe-EEEEe--cCcCCCccceECCCCCEEEEcc
Confidence 543333 33333 2234467899999999877654
|
All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs. |
| >KOG2280|consensus | Back alignment and domain information |
|---|
Probab=91.69 E-value=17 Score=37.17 Aligned_cols=52 Identities=15% Similarity=0.291 Sum_probs=39.4
Q ss_pred CeEEEEEcCCCceeEeccccCCceeEEEECCCCCEEEEecCCCcEEEEEecCCC
Q psy18231 228 KSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRS 281 (540)
Q Consensus 228 g~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~ 281 (540)
-.|+|+++ +|+.+..+.-....+-.+.|+.+.. |+....+|++.+|++-...
T Consensus 64 ~~I~If~~-sG~lL~~~~w~~~~lI~mgWs~~ee-LI~v~k~g~v~Vy~~~ge~ 115 (829)
T KOG2280|consen 64 PYIRIFNI-SGQLLGRILWKHGELIGMGWSDDEE-LICVQKDGTVHVYGLLGEF 115 (829)
T ss_pred eeEEEEec-cccchHHHHhcCCCeeeecccCCce-EEEEeccceEEEeecchhh
Confidence 46889987 7777766655455888999997654 6666789999999986543
|
|
| >KOG1983|consensus | Back alignment and domain information |
|---|
Probab=91.53 E-value=3.5 Score=44.92 Aligned_cols=72 Identities=17% Similarity=0.131 Sum_probs=44.7
Q ss_pred cccccEEEEEecC-CeeEeeeCCCeEEEEeCCCCceEEeeeCCceEEEEEecCCcEEEeecCCCeEEEEeccccch
Q psy18231 376 EARDSITSVHVSD-HEILTASLDCRIRRYDIRTGNLVTDYVGEPIVDACFTRDCQCILTCSTDECLRLFDKATGEL 450 (540)
Q Consensus 376 ~~~~~v~~l~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~ 450 (540)
.+..++.+..+.. ...+.+..-+.+-+|+.........+..... ..++++..++++..||.+..||...++.
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~v~~h~Dgs~~fWd~s~g~~ 268 (993)
T KOG1983|consen 196 LIEYESLQVLYYSPTKILIGFNRGLVVIKDRASKYVQSAYLPNGQ---LESRDGSHFVSYHTDGSYAFWDVSSGKL 268 (993)
T ss_pred ccccccceeeeecCCCcceeeeeeeeeehhcccccchhhcccccc---cCccCCceEEEEEecCCEEeeecCCCce
Confidence 3444555554433 5555566666666666554443333332111 1178899999999999999999988643
|
|
| >COG5276 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=91.22 E-value=11 Score=33.90 Aligned_cols=241 Identities=9% Similarity=0.045 Sum_probs=134.1
Q ss_pred eeeeee-cCeEEEEeCCCCCEEEEeeCCCcEEEEcCCCC---eeEEEeecCCcceeEEEEeeCCCeEEEeeCCCeEEEEE
Q psy18231 159 RELFVL-SGLMHTRFPVDGSYCLTCGSDKKIKLWNPYRN---LLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWE 234 (540)
Q Consensus 159 ~~~~h~-~~v~~v~~spdg~~lat~~~dg~i~iwd~~~~---~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~dg~i~iwd 234 (540)
...+|. +.|..+....+-.++..|-.--..-+|+.... ..+..+ .-.+-+..+.++ +++...+..+.-++|.|
T Consensus 36 ~~vghfg~~vsavdv~~~ya~v~qG~~l~i~ditn~~~~t~~~l~~~i-~~~~l~~Dv~vs--e~yvyvad~ssGL~IvD 112 (370)
T COG5276 36 AYVGHFGKGVSAVDVRGAYAYVGQGFILAILDITNVSLQTHDVLLSVI-NARDLFADVRVS--EEYVYVADWSSGLRIVD 112 (370)
T ss_pred EEeeeccCCcccccccccccccccCceEeeccccCcccccCcceEEEE-ehhhhhheeEec--ccEEEEEcCCCceEEEe
Confidence 344566 45665555444333333322122335554411 222222 235566777887 45677777778899999
Q ss_pred cCCCceeEecc--ccCCceeEEEECCCCCEEEEecCCCcEEEEEecCCCCCCcchhhhhHhhhhcCCceeEEEEeecccc
Q psy18231 235 VTTGQPVRRWR--EHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTK 312 (540)
Q Consensus 235 ~~~~~~~~~~~--~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (540)
+.+......+. .-.+.-.++.. .|++...+..|.-+.+.|+.+.....+.
T Consensus 113 IS~P~sP~~~~~lnt~gyaygv~v--sGn~aYVadlddgfLivdvsdpssP~la-------------------------- 164 (370)
T COG5276 113 ISTPDSPTLIGFLNTDGYAYGVYV--SGNYAYVADLDDGFLIVDVSDPSSPQLA-------------------------- 164 (370)
T ss_pred ccCCCCcceeccccCCceEEEEEe--cCCEEEEeeccCcEEEEECCCCCCceee--------------------------
Confidence 98765433221 11233445555 4788888886666888898876531111
Q ss_pred cccccCceeeEEEeeeecccccceeeeeeccceeEEEeecccceecccccccccccchhhhhhcccccEEEEEecCCeeE
Q psy18231 313 NHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEARDSITSVHVSDHEIL 392 (540)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~ 392 (540)
-........-..++.+.++-.
T Consensus 165 -----------------------------------------------------------grya~~~~d~~~v~ISGn~AY 185 (370)
T COG5276 165 -----------------------------------------------------------GRYALPGGDTHDVAISGNYAY 185 (370)
T ss_pred -----------------------------------------------------------eeeccCCCCceeEEEecCeEE
Confidence 011111222356778888888
Q ss_pred eeeCCCeEEEEeCCCCc---eEEeeeC-CceEEEEEecCCcEEEeecCCCeEEEEeccccchhhhhccC-cCCcceEEEE
Q psy18231 393 TASLDCRIRRYDIRTGN---LVTDYVG-EPIVDACFTRDCQCILTCSTDECLRLFDKATGELLEEYKGH-KSGDFRIECC 467 (540)
Q Consensus 393 ~~~~dg~i~iwd~~~~~---~~~~~~~-~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-~~~v~~~~~~ 467 (540)
.+..|+-+.+.|+.... .+....- ..+.++..+++..+++...+ -+.+-|....+....+..- +..+.++. .
T Consensus 186 vA~~d~GL~ivDVSnp~sPvli~~~n~g~g~~sv~vsdnr~y~vvy~e--gvlivd~s~~ssp~~~gsyet~~p~~~s-~ 262 (370)
T COG5276 186 VAWRDGGLTIVDVSNPHSPVLIGSYNTGPGTYSVSVSDNRAYLVVYDE--GVLIVDVSGPSSPTVFGSYETSNPVSIS-T 262 (370)
T ss_pred EEEeCCCeEEEEccCCCCCeEEEEEecCCceEEEEecCCeeEEEEccc--ceEEEecCCCCCceEeeccccCCccccc-c
Confidence 88899999999998653 3344443 47888888888777666543 3566666554433222111 11112221 2
Q ss_pred ecCCCCeEEEeeCCCcEEEEEecCC
Q psy18231 468 LDSKDSQIFCGSSDGKIYKWQLVDS 492 (540)
Q Consensus 468 ~s~~~~~l~s~s~dg~i~iwd~~~~ 492 (540)
+.-.+++...+..+.-+.+-|+.+.
T Consensus 263 v~Vs~~~~Yvadga~gl~~idisnp 287 (370)
T COG5276 263 VPVSGEYAYVADGAKGLPIIDISNP 287 (370)
T ss_pred eecccceeeeeccccCceeEeccCC
Confidence 3334566666666666666666543
|
|
| >PF14761 HPS3_N: Hermansky-Pudlak syndrome 3 | Back alignment and domain information |
|---|
Probab=91.09 E-value=7.9 Score=33.16 Aligned_cols=105 Identities=11% Similarity=0.154 Sum_probs=0.0
Q ss_pred EeCCCC-CEEEEeeCCCcEEEEcCC--CCeeEEEeecCCcceeEEEEeeCCCeEEE------eeCCCeEEEE-EcCCCc-
Q psy18231 171 RFPVDG-SYCLTCGSDKKIKLWNPY--RNLLLKTYGGHAHEVNDATAACDSSQIAS------GASDKSVILW-EVTTGQ- 239 (540)
Q Consensus 171 ~~spdg-~~lat~~~dg~i~iwd~~--~~~~~~~~~~h~~~v~~l~~sp~~~~l~s------~s~dg~i~iw-d~~~~~- 239 (540)
++..-| +.|..+.....|.+|++. ..+++.+|..- +.|..+.++..|++|+| ++....+|+| +++..+
T Consensus 22 ~~c~~g~d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv-~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~ 100 (215)
T PF14761_consen 22 AVCCGGPDALFVAASGCKVEVYDLEQEECPLLCTFSTV-GRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKE 100 (215)
T ss_pred eeeccCCceEEEEcCCCEEEEEEcccCCCceeEEEcch-hheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcc
Q ss_pred --------------------------eeEeccccCCceeEEEECCCCCEEEEecCCCcEEEEEec
Q psy18231 240 --------------------------PVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVK 278 (540)
Q Consensus 240 --------------------------~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~ 278 (540)
.+-.+.- ...+.+++..|-..-|+.|+ ++.+.+|.+.
T Consensus 101 ~~~~v~vRiaG~~v~~~~~~~~~~qleiiElPl-~~~p~ciaCC~~tG~LlVg~-~~~l~lf~l~ 163 (215)
T PF14761_consen 101 ENSPVRVRIAGHRVTPSFNESSKDQLEIIELPL-SEPPLCIACCPVTGNLLVGC-GNKLVLFTLK 163 (215)
T ss_pred cCCcEEEEEcccccccCCCCccccceEEEEecC-CCCCCEEEecCCCCCEEEEc-CCEEEEEEEE
|
|
| >KOG3616|consensus | Back alignment and domain information |
|---|
Probab=91.00 E-value=4.8 Score=40.78 Aligned_cols=70 Identities=13% Similarity=0.253 Sum_probs=47.4
Q ss_pred CcceeEEEEeeCCCeEEEeeCCCeEEEEEcCCCceeEeccccCCceeEEEECCCCCEEEEecCCCcEEEEEec
Q psy18231 206 AHEVNDATAACDSSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVK 278 (540)
Q Consensus 206 ~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~ 278 (540)
..-++++.-+|.++.++.+..||.|++++....+..... ....+-..+.|...| |+++..|..+.-|.-.
T Consensus 14 ~e~~~aiqshp~~~s~v~~~~d~si~lfn~~~r~qski~-~~~~p~~nlv~tnhg--l~~~tsdrr~la~~~d 83 (1636)
T KOG3616|consen 14 DEFTTAIQSHPGGQSFVLAHQDGSIILFNFIPRRQSKIC-EEAKPKENLVFTNHG--LVTATSDRRALAWKED 83 (1636)
T ss_pred cceeeeeeecCCCceEEEEecCCcEEEEeecccchhhhh-hhcCCccceeeeccc--eEEEeccchhheeecc
Confidence 445677888899999999999999999998765442222 122334455665444 5666667777777543
|
|
| >COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=90.77 E-value=7 Score=33.11 Aligned_cols=124 Identities=10% Similarity=0.038 Sum_probs=72.8
Q ss_pred CCCeEEEEeCCCCceEEeeeC-CceEEEEEecCCcEEEeecCCCeEEEEeccccchhhhhccCc--CCcceEE-EEecCC
Q psy18231 396 LDCRIRRYDIRTGNLVTDYVG-EPIVDACFTRDCQCILTCSTDECLRLFDKATGELLEEYKGHK--SGDFRIE-CCLDSK 471 (540)
Q Consensus 396 ~dg~i~iwd~~~~~~~~~~~~-~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~--~~v~~~~-~~~s~~ 471 (540)
.+|.-..+|.++.+.+..+.- +.-..++. |++.|+.++...+++.-|.++.....+..... .+|..+. +.| -|
T Consensus 109 ~egvaf~~d~~t~~~lg~~~y~GeGWgLt~--d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~-Vd 185 (262)
T COG3823 109 KEGVAFKYDADTLEELGRFSYEGEGWGLTS--DDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEW-VD 185 (262)
T ss_pred ccceeEEEChHHhhhhcccccCCcceeeec--CCcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceee-ec
Confidence 467778889888887766642 23344433 55557766666677777766655444433221 1121111 011 25
Q ss_pred CCeEEEeeCCCcEEEEEecCCcceeEEEec----------ccceeeeEEEEcCCC-cEEEee
Q psy18231 472 DSQIFCGSSDGKIYKWQLVDSSQISTLIHS----------VGKAVVNSLCSHPTR-KHIMSA 522 (540)
Q Consensus 472 ~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~----------~~~~~v~~l~~s~d~-~~l~s~ 522 (540)
|...|-.-.+..|..-|..+|+.+..+... .|....+.+++.|++ +++++|
T Consensus 186 G~lyANVw~t~~I~rI~p~sGrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG 247 (262)
T COG3823 186 GELYANVWQTTRIARIDPDSGRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG 247 (262)
T ss_pred cEEEEeeeeecceEEEcCCCCcEEEEEEccCCchhcCccccccccccceeecCcCCeEEEec
Confidence 655665555666666777777776655421 345578899999988 555665
|
|
| >cd04747 OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 5 | Back alignment and domain information |
|---|
Probab=90.61 E-value=0.78 Score=43.42 Aligned_cols=41 Identities=15% Similarity=-0.027 Sum_probs=27.9
Q ss_pred cceecCCceEEeccCCC-------CCHHHHHHHHHc--CCCEEEeeeeec
Q psy18231 10 RSTLLKNLKHCDSTLWT-------SKLNFRQLVRSH--NVDLCFTPMIIA 50 (540)
Q Consensus 10 ~~~~~~~~~~~ap~~~~-------~~~~~r~~~~~~--~~~~~~~~~~~~ 50 (540)
+++.+++|+++|||... |+.-.+...++. |+++..||.+..
T Consensus 8 g~~~lkNRiv~spm~~~~~~~G~~t~~~~~yy~~rA~GG~GlIite~~~V 57 (361)
T cd04747 8 KGLTLPNRIVMAPMTRSFSPGGVPGQDVAAYYRRRAAGGVGLIITEGTAV 57 (361)
T ss_pred CCEEeeCCeEEcCcccCcCCCCCCCHHHHHHHHHHhcCCccEEEecceEe
Confidence 46889999999999633 334433333333 789999986554
|
Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. |
| >TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118 | Back alignment and domain information |
|---|
Probab=90.55 E-value=13 Score=33.71 Aligned_cols=61 Identities=8% Similarity=0.145 Sum_probs=43.5
Q ss_pred EEEeeCCCcEEEEEecCCcceeEEEecccceeeeEEEEcC------CCcEEEeec-CCeeEEEEccccc
Q psy18231 475 IFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHP------TRKHIMSAC-GNNVKLWTAEEDY 536 (540)
Q Consensus 475 l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~------d~~~l~s~~-d~~i~iw~~~~~~ 536 (540)
=+.|..-|.|-+|| .++..++++...+.-.....|+..| .+.+|+--- ||+|..+|..++.
T Consensus 215 ~v~G~G~G~VdvFd-~~G~l~~r~as~g~LNaPWG~a~APa~FG~~sg~lLVGNFGDG~InaFD~~sG~ 282 (336)
T TIGR03118 215 EVAGAGLGYVNVFT-LNGQLLRRVASSGRLNAPWGLAIAPESFGSLSGALLVGNFGDGTINAYDPQSGA 282 (336)
T ss_pred cccCCCcceEEEEc-CCCcEEEEeccCCcccCCceeeeChhhhCCCCCCeEEeecCCceeEEecCCCCc
Confidence 33445567899999 5788888886545556677787755 356666555 9999999987553
|
This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus. |
| >PRK13523 NADPH dehydrogenase NamA; Provisional | Back alignment and domain information |
|---|
Probab=90.54 E-value=0.81 Score=42.97 Aligned_cols=41 Identities=15% Similarity=0.016 Sum_probs=26.5
Q ss_pred cceecCCceEEeccCCCC-----CHH----HHHHH--HHcCCCEEEeeeeec
Q psy18231 10 RSTLLKNLKHCDSTLWTS-----KLN----FRQLV--RSHNVDLCFTPMIIA 50 (540)
Q Consensus 10 ~~~~~~~~~~~ap~~~~~-----~~~----~r~~~--~~~~~~~~~~~~~~~ 50 (540)
+.+.+++|+++|||.... ..| .+... ++-|++++.||-+..
T Consensus 10 g~~~lkNRiv~apm~~~~~~~~~G~~t~~~~~~y~~rA~gG~GlIi~~~~~v 61 (337)
T PRK13523 10 KDVTLKNRIVMSPMCMYSSENKDGKVTNFHLIHYGTRAAGQVGLVIVEATAV 61 (337)
T ss_pred CCEeeecccEecccccccccCCCCCCCHHHHHHHHHHHcCCCeEEEECCeEE
Confidence 468899999999996532 122 22222 223789999996543
|
|
| >KOG4659|consensus | Back alignment and domain information |
|---|
Probab=90.42 E-value=32 Score=37.90 Aligned_cols=22 Identities=14% Similarity=0.143 Sum_probs=16.6
Q ss_pred ccceeeeEEEEcCCCcEEEeec
Q psy18231 502 VGKAVVNSLCSHPTRKHIMSAC 523 (540)
Q Consensus 502 ~~~~~v~~l~~s~d~~~l~s~~ 523 (540)
+|-..+.+++.+|||...++-.
T Consensus 659 A~lnsp~alaVsPdg~v~IAD~ 680 (1899)
T KOG4659|consen 659 AKLNSPYALAVSPDGDVIIADS 680 (1899)
T ss_pred cccCCcceEEECCCCcEEEecC
Confidence 4566788999999998766543
|
|
| >PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes [] | Back alignment and domain information |
|---|
Probab=90.04 E-value=6 Score=40.70 Aligned_cols=110 Identities=12% Similarity=0.125 Sum_probs=73.8
Q ss_pred eEEEEeCC--CCCEEEEeeCCCcEEEEcCCC-------C-------------eeEEEeecCCcceeEEEEe--eCCCeEE
Q psy18231 167 LMHTRFPV--DGSYCLTCGSDKKIKLWNPYR-------N-------------LLLKTYGGHAHEVNDATAA--CDSSQIA 222 (540)
Q Consensus 167 v~~v~~sp--dg~~lat~~~dg~i~iwd~~~-------~-------------~~~~~~~~h~~~v~~l~~s--p~~~~l~ 222 (540)
|+.|.... +...|+.+..||.|.+|.+++ . ++...+. -...+++++++ ...++||
T Consensus 103 IN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~rlIA 181 (717)
T PF08728_consen 103 INFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKSRLIA 181 (717)
T ss_pred eeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcceEEE
Confidence 44444333 456788999999999996421 0 0122222 34578999998 7788888
Q ss_pred EeeCCCeEEEEEcCCC--ceeE-eccccCCceeEEEECCCC---C---EEEEecCCCcEEEEEe
Q psy18231 223 SGASDKSVILWEVTTG--QPVR-RWREHASKVTCVKFNEDS---S---VVISGSQDNTVMMWDV 277 (540)
Q Consensus 223 s~s~dg~i~iwd~~~~--~~~~-~~~~h~~~v~~~~~~~~~---~---~l~s~~~dg~i~iwd~ 277 (540)
+++....|.||-.... +... .-..|...|-+|+|.++. . .+++++-.|.+.+|++
T Consensus 182 VSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 182 VSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 8888888888765442 1111 111366789999997733 2 7888889999999888
|
RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance []. |
| >cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain | Back alignment and domain information |
|---|
Probab=90.01 E-value=0.93 Score=42.78 Aligned_cols=41 Identities=15% Similarity=0.029 Sum_probs=26.0
Q ss_pred cceecCCceEEeccCCCCC---HH----HHHHHH--HcCCCEEEeeeeec
Q psy18231 10 RSTLLKNLKHCDSTLWTSK---LN----FRQLVR--SHNVDLCFTPMIIA 50 (540)
Q Consensus 10 ~~~~~~~~~~~ap~~~~~~---~~----~r~~~~--~~~~~~~~~~~~~~ 50 (540)
+.+.+++|+++|||..... .| .....+ +-|++++++|.+..
T Consensus 8 g~~~l~NRi~~~pm~~~~~~~g~~~~~~~~~y~~rA~gg~glii~~~~~v 57 (336)
T cd02932 8 RGVTLKNRIVVSPMCQYSAEDGVATDWHLVHYGSRALGGAGLVIVEATAV 57 (336)
T ss_pred CCEEEeccCEEcccccCcCCCCCCCHHHHHHHHHHHcCCCcEEEEcceEE
Confidence 4588999999999964221 22 222222 23789999986543
|
YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs. |
| >PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases | Back alignment and domain information |
|---|
Probab=89.95 E-value=6.6 Score=37.00 Aligned_cols=102 Identities=15% Similarity=0.245 Sum_probs=52.8
Q ss_pred ceEEEEEecCCcEEEeecCCCeEEEEeccccch---hhhh----ccCcCCcceEEEEecCC---CCeEEE-eeCC-----
Q psy18231 418 PIVDACFTRDCQCILTCSTDECLRLFDKATGEL---LEEY----KGHKSGDFRIECCLDSK---DSQIFC-GSSD----- 481 (540)
Q Consensus 418 ~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~---~~~~----~~~~~~v~~~~~~~s~~---~~~l~s-~s~d----- 481 (540)
..+.|+|.|||+++++ ...|.|++++ ..+.. +..+ ....... +.++++|+ ..+|+. .+..
T Consensus 3 ~P~~~a~~pdG~l~v~-e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gl--lgia~~p~f~~n~~lYv~~t~~~~~~~ 78 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLVA-ERSGRIWVVD-KDGSLKTPVADLPEVFADGERGL--LGIAFHPDFASNGYLYVYYTNADEDGG 78 (331)
T ss_dssp SEEEEEEETTSCEEEE-ETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSE--EEEEE-TTCCCC-EEEEEEEEE-TSSS
T ss_pred CceEEEEeCCCcEEEE-eCCceEEEEe-CCCcCcceecccccccccccCCc--ccceeccccCCCCEEEEEEEcccCCCC
Confidence 3578999999987765 5599999999 33332 1111 1122223 44488884 234333 3321
Q ss_pred ---CcEEEEEecCC-------ccee-EEEe-cccceeeeEEEEcCCCcEEEeec
Q psy18231 482 ---GKIYKWQLVDS-------SQIS-TLIH-SVGKAVVNSLCSHPTRKHIMSAC 523 (540)
Q Consensus 482 ---g~i~iwd~~~~-------~~~~-~~~~-~~~~~~v~~l~~s~d~~~l~s~~ 523 (540)
..|.-|.+..+ +.+. .+.. ......-..|+|.|||.+.++.+
T Consensus 79 ~~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G 132 (331)
T PF07995_consen 79 DNDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVG 132 (331)
T ss_dssp SEEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB
T ss_pred CcceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeC
Confidence 24555555443 1111 1121 01223456699999998777765
|
The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B .... |
| >TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat | Back alignment and domain information |
|---|
Probab=89.87 E-value=1.8 Score=25.80 Aligned_cols=40 Identities=10% Similarity=0.064 Sum_probs=28.2
Q ss_pred CCCCEEEEee-CCCcEEEEcCCCCeeEEEeecCCcceeEEEE
Q psy18231 174 VDGSYCLTCG-SDKKIKLWNPYRNLLLKTYGGHAHEVNDATA 214 (540)
Q Consensus 174 pdg~~lat~~-~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~ 214 (540)
|++++|+++. .+++|.++|..+++.+..+.. ...-..++|
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~v-g~~P~~i~~ 41 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPV-GGYPFGVAV 41 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEEC-CCCCceEEe
Confidence 6788777655 478999999999988888765 233334444
|
This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400). |
| >PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs | Back alignment and domain information |
|---|
Probab=89.71 E-value=11 Score=39.56 Aligned_cols=75 Identities=9% Similarity=0.087 Sum_probs=48.9
Q ss_pred ceEEEEEecCCcEEEeecCCCeEEEEeccc----------cchh---h------hhccCcCCcceEEEEecCC---CCeE
Q psy18231 418 PIVDACFTRDCQCILTCSTDECLRLFDKAT----------GELL---E------EYKGHKSGDFRIECCLDSK---DSQI 475 (540)
Q Consensus 418 ~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~----------~~~~---~------~~~~~~~~v~~~~~~~s~~---~~~l 475 (540)
.|..+.++|+|.+|+..+..|. .|..+.. ++.. + .+-..........+.|+|. +..|
T Consensus 86 ~v~~i~~n~~g~~lal~G~~~v-~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~l 164 (717)
T PF10168_consen 86 EVHQISLNPTGSLLALVGPRGV-VVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSHL 164 (717)
T ss_pred eEEEEEECCCCCEEEEEcCCcE-EEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCeE
Confidence 5889999999999999888664 4443321 1110 0 0111122233444588887 5789
Q ss_pred EEeeCCCcEEEEEecCCc
Q psy18231 476 FCGSSDGKIYKWQLVDSS 493 (540)
Q Consensus 476 ~s~s~dg~i~iwd~~~~~ 493 (540)
+.-..|+++|+||+....
T Consensus 165 ~vLtsdn~lR~y~~~~~~ 182 (717)
T PF10168_consen 165 VVLTSDNTLRLYDISDPQ 182 (717)
T ss_pred EEEecCCEEEEEecCCCC
Confidence 999999999999997643
|
It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells []. |
| >COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=89.09 E-value=13 Score=31.56 Aligned_cols=29 Identities=21% Similarity=0.212 Sum_probs=21.0
Q ss_pred CCCeEEEeeCC--CeEEEEEcCCCceeEecc
Q psy18231 217 DSSQIASGASD--KSVILWEVTTGQPVRRWR 245 (540)
Q Consensus 217 ~~~~l~s~s~d--g~i~iwd~~~~~~~~~~~ 245 (540)
+|.++.+.+.- ..|++||+.+|+.+...+
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~ 85 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEK 85 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceEEEEee
Confidence 56667776653 479999999998776543
|
|
| >PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []) | Back alignment and domain information |
|---|
Probab=88.80 E-value=3 Score=34.86 Aligned_cols=31 Identities=6% Similarity=0.204 Sum_probs=25.8
Q ss_pred CceeEEEECCCC------CEEEEecCCCcEEEEEecC
Q psy18231 249 SKVTCVKFNEDS------SVVISGSQDNTVMMWDVKS 279 (540)
Q Consensus 249 ~~v~~~~~~~~~------~~l~s~~~dg~i~iwd~~~ 279 (540)
..|..++|||.| -.|++.+.+|.|.+|....
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 479999999943 3788889999999998764
|
The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 []. |
| >KOG1983|consensus | Back alignment and domain information |
|---|
Probab=88.63 E-value=15 Score=40.29 Aligned_cols=30 Identities=7% Similarity=0.083 Sum_probs=25.4
Q ss_pred cceeEEEEeeCCCeEEEeeCCCeEEEEEcC
Q psy18231 207 HEVNDATAACDSSQIASGASDKSVILWEVT 236 (540)
Q Consensus 207 ~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~ 236 (540)
.....++|+|.-.++|.+..+|.|+++-..
T Consensus 36 ~~~~~~afD~~q~llai~t~tg~i~~yg~~ 65 (993)
T KOG1983|consen 36 STPSALAFDPTQGLLAIGTRTGAIKIYGQP 65 (993)
T ss_pred CCCcceeeccccceEEEEEecccEEEeccc
Confidence 345678999999999999999999998653
|
|
| >cd02929 TMADH_HD_FMN Trimethylamine dehydrogenase (TMADH) and histamine dehydrogenase (HD) FMN-binding domain | Back alignment and domain information |
|---|
Probab=88.50 E-value=1.7 Score=41.60 Aligned_cols=42 Identities=7% Similarity=-0.186 Sum_probs=26.2
Q ss_pred cceecCCceEEeccCCC----CCHHH---HHHHHHcCCCEEEeeeeecc
Q psy18231 10 RSTLLKNLKHCDSTLWT----SKLNF---RQLVRSHNVDLCFTPMIIAD 51 (540)
Q Consensus 10 ~~~~~~~~~~~ap~~~~----~~~~~---r~~~~~~~~~~~~~~~~~~~ 51 (540)
+++.+++|+++|||... +...+ +...++-|+++..||-+...
T Consensus 15 g~~~lkNRiv~apm~~~~~~~~~~~~~~y~~~rA~gG~GLIi~e~~~V~ 63 (370)
T cd02929 15 GPVTARNRFYQVPHCNGMGYRKPSAQAAMRGIKAEGGWGVVNTEQCSIH 63 (370)
T ss_pred CCEEeccceEECCcccCcCCCChHHHHHHHHHHhCCCceEEEEeeeEEc
Confidence 46789999999999532 21112 11112237899999975543
|
TMADH is an iron-sulfur flavoprotein that catalyzes the oxidative demethylation of trimethylamine to form dimethylamine and formaldehyde. The protein forms a symetrical dimer with each subunit containing one 4Fe-4S cluster and one FMN cofactor. It contains a unique flavin, in the form of a 6-S-cysteinyl FMN which is bent by ~25 degrees along the N5-N10 axis of the flavin isoalloxazine ring. This modification of the conformation of the flavin is thought to facilitate catalysis.The closely related histamine dehydrogenase catalyzes oxidative deamination of histamine. |
| >KOG2247|consensus | Back alignment and domain information |
|---|
Probab=88.41 E-value=0.084 Score=49.89 Aligned_cols=112 Identities=8% Similarity=0.200 Sum_probs=75.5
Q ss_pred EEEEeCCCCCEEEEeeCCCcEEEEcCCCCeeEEEeecCCcceeEEEEeeCCCeEE-EeeCCCeEEEEEcCCCceeEeccc
Q psy18231 168 MHTRFPVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIA-SGASDKSVILWEVTTGQPVRRWRE 246 (540)
Q Consensus 168 ~~v~~spdg~~lat~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~-s~s~dg~i~iwd~~~~~~~~~~~~ 246 (540)
....|-|.+.-++.++.+..+..||- .++...... .++....++|..++..++ .+-..+.+.+||+.+....+.-.+
T Consensus 38 i~~~w~~e~~nlavaca~tiv~~YD~-agq~~le~n-~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqqLE~g 115 (615)
T KOG2247|consen 38 IIHRWRPEGHNLAVACANTIVIYYDK-AGQVILELN-PTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQLESG 115 (615)
T ss_pred ceeeEecCCCceehhhhhhHHHhhhh-hcceecccC-CchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHHHhcc
Confidence 34456777777888888999999994 454444443 456667788888776654 455678999999976532211111
Q ss_pred cCCceeEEEECCCCCEEEEecCCCcEEEEEecCCC
Q psy18231 247 HASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRS 281 (540)
Q Consensus 247 h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~ 281 (540)
-...-.-+.|++....++.+-..|.+.+++-.+..
T Consensus 116 g~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR 150 (615)
T KOG2247|consen 116 GTSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSR 150 (615)
T ss_pred CcchHHHHhhccCCccccccccccceEEEeccchh
Confidence 12222227888888888888888999999876654
|
|
| >PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3 | Back alignment and domain information |
|---|
Probab=88.27 E-value=24 Score=33.59 Aligned_cols=142 Identities=14% Similarity=0.197 Sum_probs=82.9
Q ss_pred CeeEeeeCCCeEEEEeCCCCceEEeeeCCceEEEEEe----cCCcE--EEeec-CC---CeEEEEeccc--cchhhhhcc
Q psy18231 389 HEILTASLDCRIRRYDIRTGNLVTDYVGEPIVDACFT----RDCQC--ILTCS-TD---ECLRLFDKAT--GELLEEYKG 456 (540)
Q Consensus 389 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~i~~~~~s----p~~~~--l~~~~-~d---g~i~i~d~~~--~~~~~~~~~ 456 (540)
++++....++-+.+||++ |+.++.+.....+.+..- -+|+. |++++ .+ .+|++|.+.. +. +..+..
T Consensus 69 SlIigTdK~~GL~VYdL~-Gk~lq~~~~Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g~-L~~v~~ 146 (381)
T PF02333_consen 69 SLIIGTDKKGGLYVYDLD-GKELQSLPVGRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTGE-LTDVTD 146 (381)
T ss_dssp -EEEEEETTTEEEEEETT-S-EEEEE-SS-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTTE-EEE-CB
T ss_pred ceEEEEeCCCCEEEEcCC-CcEEEeecCCCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCCc-ceEcCC
Confidence 677888889999999997 666677765555544432 23443 34443 22 5799997752 32 222211
Q ss_pred -------CcCCcceEEEEecC-CCC-eEEEeeCCCcEEEEEecC---C----cceeEEEecccceeeeEEEEcCCCcEEE
Q psy18231 457 -------HKSGDFRIECCLDS-KDS-QIFCGSSDGKIYKWQLVD---S----SQISTLIHSVGKAVVNSLCSHPTRKHIM 520 (540)
Q Consensus 457 -------~~~~v~~~~~~~s~-~~~-~l~s~s~dg~i~iwd~~~---~----~~~~~~~~~~~~~~v~~l~~s~d~~~l~ 520 (540)
....++.+++--++ +|. +++....+|.+..|.+.. + ++++++. -.+.+..|+......+|.
T Consensus 147 ~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~---~~sQ~EGCVVDDe~g~LY 223 (381)
T PF02333_consen 147 PAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFK---VGSQPEGCVVDDETGRLY 223 (381)
T ss_dssp TTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE----SS-EEEEEEETTTTEEE
T ss_pred CCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEec---CCCcceEEEEecccCCEE
Confidence 11235566433344 455 466778899999998852 2 3466665 234788999988888999
Q ss_pred eec-CCeeEEEEcccc
Q psy18231 521 SAC-GNNVKLWTAEED 535 (540)
Q Consensus 521 s~~-d~~i~iw~~~~~ 535 (540)
.+- |.-|.-|+.+.+
T Consensus 224 vgEE~~GIW~y~Aep~ 239 (381)
T PF02333_consen 224 VGEEDVGIWRYDAEPE 239 (381)
T ss_dssp EEETTTEEEEEESSCC
T ss_pred EecCccEEEEEecCCC
Confidence 988 766666666543
|
1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A. |
| >PF14727 PHTB1_N: PTHB1 N-terminus | Back alignment and domain information |
|---|
Probab=88.16 E-value=27 Score=33.96 Aligned_cols=103 Identities=12% Similarity=0.162 Sum_probs=59.2
Q ss_pred CCCEEEEeeCCCcEEEEcCCCCe-----eEEEeecCCcceeEEEEee-----CCCeEEEeeCCCeEEEEEcCCC--c---
Q psy18231 175 DGSYCLTCGSDKKIKLWNPYRNL-----LLKTYGGHAHEVNDATAAC-----DSSQIASGASDKSVILWEVTTG--Q--- 239 (540)
Q Consensus 175 dg~~lat~~~dg~i~iwd~~~~~-----~~~~~~~h~~~v~~l~~sp-----~~~~l~s~s~dg~i~iwd~~~~--~--- 239 (540)
+...|++||..|.++||++..+. .+.+.+ -..+|..++.-. +...||. -.-..+.||.+... .
T Consensus 36 ~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~-l~~PILqv~~G~F~s~~~~~~LaV-LhP~kl~vY~v~~~~g~~~~ 113 (418)
T PF14727_consen 36 GSDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQ-LKDPILQVECGKFVSGSEDLQLAV-LHPRKLSVYSVSLVDGTVEH 113 (418)
T ss_pred CccEEEEeccccEEEEEccCCCCCCCccEEEEEe-cCCcEEEEEeccccCCCCcceEEE-ecCCEEEEEEEEecCCCccc
Confidence 44689999999999999986543 222222 456777776532 2223333 44567777777321 1
Q ss_pred ----eeEeccccC--CceeEEEECC----C-CCEEEEecCCCcEEEEEecC
Q psy18231 240 ----PVRRWREHA--SKVTCVKFNE----D-SSVVISGSQDNTVMMWDVKS 279 (540)
Q Consensus 240 ----~~~~~~~h~--~~v~~~~~~~----~-~~~l~s~~~dg~i~iwd~~~ 279 (540)
.+..+..|. .....++.-| . ..++..-+-||.+.+++-+.
T Consensus 114 g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~ 164 (418)
T PF14727_consen 114 GNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQES 164 (418)
T ss_pred CcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCc
Confidence 112222332 2223333322 2 35788889999999998554
|
|
| >cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2 | Back alignment and domain information |
|---|
Probab=87.93 E-value=1.1 Score=42.29 Aligned_cols=40 Identities=15% Similarity=0.017 Sum_probs=26.0
Q ss_pred ceecCCceEEeccCCC--------CCHHHHHHHHH--cCCCEEEeeeeec
Q psy18231 11 STLLKNLKHCDSTLWT--------SKLNFRQLVRS--HNVDLCFTPMIIA 50 (540)
Q Consensus 11 ~~~~~~~~~~ap~~~~--------~~~~~r~~~~~--~~~~~~~~~~~~~ 50 (540)
+++|+||+++|||... |+.-.....++ -|++++.+|.+..
T Consensus 10 ~~~lkNRi~~~p~~~~~~~~~g~~~~~~~~~y~~rA~gG~glii~~~~~v 59 (338)
T cd04733 10 GATLPNRLAKAAMSERLADGRGLPTPELIRLYRRWAEGGIGLIITGNVMV 59 (338)
T ss_pred CcEEcccceecccccccccCCCCCCHHHHHHHHHHhCCCceEEEEeeEEE
Confidence 4899999999999632 22223323233 2789999996543
|
Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. |
| >cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain | Back alignment and domain information |
|---|
Probab=87.83 E-value=1.5 Score=41.75 Aligned_cols=41 Identities=17% Similarity=-0.095 Sum_probs=27.4
Q ss_pred cceecCCceEEeccC-CC------CCHHHHHHHHHc--CCCEEEeeeeec
Q psy18231 10 RSTLLKNLKHCDSTL-WT------SKLNFRQLVRSH--NVDLCFTPMIIA 50 (540)
Q Consensus 10 ~~~~~~~~~~~ap~~-~~------~~~~~r~~~~~~--~~~~~~~~~~~~ 50 (540)
+++++++|+++|||. +. |+.-++...++. |+++..||.+..
T Consensus 8 g~~~lkNRiv~~p~~~~~~~~~~~~~~~~~~y~~rA~gG~glii~~~~~v 57 (353)
T cd02930 8 GFTTLRNRVLMGSMHTGLEELDDGIDRLAAFYAERARGGVGLIVTGGFAP 57 (353)
T ss_pred CCEEEccccEeCCccccccCCCCCCHHHHHHHHHHhcCCceEEEEeeEEe
Confidence 468899999999996 33 233333333332 789999997544
|
DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi |
| >PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=87.65 E-value=1.5 Score=25.66 Aligned_cols=28 Identities=14% Similarity=0.125 Sum_probs=20.3
Q ss_pred cceeeeEEEEcCCCcEEEeec--C--CeeEEE
Q psy18231 503 GKAVVNSLCSHPTRKHIMSAC--G--NNVKLW 530 (540)
Q Consensus 503 ~~~~v~~l~~s~d~~~l~s~~--d--~~i~iw 530 (540)
....-....|||||+.|+-++ + |.-.||
T Consensus 7 ~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 7 SPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred CCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 344567789999999988777 6 666666
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A .... |
| >TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat | Back alignment and domain information |
|---|
Probab=87.57 E-value=2.7 Score=24.99 Aligned_cols=31 Identities=6% Similarity=0.172 Sum_probs=23.9
Q ss_pred CCCCeEEEee-CCCcEEEEEecCCcceeEEEe
Q psy18231 470 SKDSQIFCGS-SDGKIYKWQLVDSSQISTLIH 500 (540)
Q Consensus 470 ~~~~~l~s~s-~dg~i~iwd~~~~~~~~~~~~ 500 (540)
|++++|+++. .+++|.++|..+++.+..+..
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~v 32 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPV 32 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEEC
Confidence 5677666554 578999999999888888873
|
This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400). |
| >PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates | Back alignment and domain information |
|---|
Probab=87.56 E-value=2.4 Score=43.26 Aligned_cols=71 Identities=10% Similarity=0.112 Sum_probs=44.1
Q ss_pred CCCCEEEEeeCCCcEEEEcCCC----CeeEEEe--ec--------------------CCcceeEEEEee----CCCeEEE
Q psy18231 174 VDGSYCLTCGSDKKIKLWNPYR----NLLLKTY--GG--------------------HAHEVNDATAAC----DSSQIAS 223 (540)
Q Consensus 174 pdg~~lat~~~dg~i~iwd~~~----~~~~~~~--~~--------------------h~~~v~~l~~sp----~~~~l~s 223 (540)
++...++.+..||.+....... +...... .. ....+.+++.++ +..+|++
T Consensus 156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t 235 (547)
T PF11715_consen 156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFT 235 (547)
T ss_dssp -SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEE
T ss_pred cCCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEE
Confidence 4666778888888887776554 2111111 10 123455666666 7789999
Q ss_pred eeCCCeEEEEEcCCCceeEec
Q psy18231 224 GASDKSVILWEVTTGQPVRRW 244 (540)
Q Consensus 224 ~s~dg~i~iwd~~~~~~~~~~ 244 (540)
.+.|+++|+||+.+++++...
T Consensus 236 l~~D~~LRiW~l~t~~~~~~~ 256 (547)
T PF11715_consen 236 LSRDHTLRIWSLETGQCLATI 256 (547)
T ss_dssp EETTSEEEEEETTTTCEEEEE
T ss_pred EeCCCeEEEEECCCCeEEEEe
Confidence 999999999999999986653
|
The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A. |
| >COG1520 FOG: WD40-like repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=87.55 E-value=15 Score=35.39 Aligned_cols=144 Identities=15% Similarity=0.087 Sum_probs=0.0
Q ss_pred CeeEeeeCCCeEEEEeCCCCceEEeeeCC----ceEEEEEecCCcEEEeecCCCeEEEEeccccchhhhhccCcCCcceE
Q psy18231 389 HEILTASLDCRIRRYDIRTGNLVTDYVGE----PIVDACFTRDCQCILTCSTDECLRLFDKATGELLEEYKGHKSGDFRI 464 (540)
Q Consensus 389 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~----~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~ 464 (540)
..+.++..+|.|.-.|.++++.+...... .+..-.+..+|+ ++.++.++.++.+|..+|+.+..+.... . ...
T Consensus 69 g~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~-i~~g~~~g~~y~ld~~~G~~~W~~~~~~-~-~~~ 145 (370)
T COG1520 69 GTVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGK-IYVGSWDGKLYALDASTGTLVWSRNVGG-S-PYY 145 (370)
T ss_pred CeEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCe-EEEecccceEEEEECCCCcEEEEEecCC-C-eEE
Q ss_pred EEEecCCCCeEEEeeCCCcEEEEEecCCcceeEEEecc-cceeeeEEEEcCCCcEEEeec--CCeeEEEEcccc
Q psy18231 465 ECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSV-GKAVVNSLCSHPTRKHIMSAC--GNNVKLWTAEED 535 (540)
Q Consensus 465 ~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~-~~~~v~~l~~s~d~~~l~s~~--d~~i~iw~~~~~ 535 (540)
.-..-..+..+..++.++.+...|..+++..-...... -...+..--...++..++... ++.+.-.++++|
T Consensus 146 ~~~~v~~~~~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~vy~~~~~~~~~~~a~~~~~G 219 (370)
T COG1520 146 ASPPVVGDGTVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPAIASGTVYVGSDGYDGILYALNAEDG 219 (370)
T ss_pred ecCcEEcCcEEEEecCCCeEEEEEccCCcEEEEEecCCccccccccCceeecceEEEecCCCcceEEEEEccCC
|
|
| >KOG1900|consensus | Back alignment and domain information |
|---|
Probab=87.53 E-value=6.5 Score=42.73 Aligned_cols=139 Identities=17% Similarity=0.241 Sum_probs=82.7
Q ss_pred eCCCeEEEEeCCCCceEEeeeC--CceEEEEE--------ecCCcEEEeecCCCeEEEEeccccch-------hhhhccC
Q psy18231 395 SLDCRIRRYDIRTGNLVTDYVG--EPIVDACF--------TRDCQCILTCSTDECLRLFDKATGEL-------LEEYKGH 457 (540)
Q Consensus 395 ~~dg~i~iwd~~~~~~~~~~~~--~~i~~~~~--------sp~~~~l~~~~~dg~i~i~d~~~~~~-------~~~~~~~ 457 (540)
+.|+.+.+|+.+++.....+.+ +.|..+.. -|.=+++++-+.--.|.++-+.-.+. ...++-.
T Consensus 96 TiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~i~ 175 (1311)
T KOG1900|consen 96 TIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFKIS 175 (1311)
T ss_pred EeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccccceeee
Confidence 4588999999999777766665 55555542 33334444444445566654332211 1122222
Q ss_pred cCCcceEEEEecCCCCeEEEeeCCCcEEEEEec----CC---c-c-------------ee-EEEec-ccceeeeEEEEcC
Q psy18231 458 KSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLV----DS---S-Q-------------IS-TLIHS-VGKAVVNSLCSHP 514 (540)
Q Consensus 458 ~~~v~~~~~~~s~~~~~l~s~s~dg~i~iwd~~----~~---~-~-------------~~-~~~~~-~~~~~v~~l~~s~ 514 (540)
...++........+|+.+.+| .||. +|.+. ++ + + +. .+..+ .+.++|..+....
T Consensus 176 ~dg~~V~~I~~t~nGRIF~~G-~dg~--lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~ 252 (1311)
T KOG1900|consen 176 VDGVSVNCITYTENGRIFFAG-RDGN--LYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDN 252 (1311)
T ss_pred cCCceEEEEEeccCCcEEEee-cCCC--EEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEecc
Confidence 434444433667777766665 4554 45431 11 1 1 00 11111 5677999999998
Q ss_pred CCcEEEeec-CCeeEEEEccccc
Q psy18231 515 TRKHIMSAC-GNNVKLWTAEEDY 536 (540)
Q Consensus 515 d~~~l~s~~-d~~i~iw~~~~~~ 536 (540)
....|.+-+ .++|.+|++.+..
T Consensus 253 SR~IlY~lsek~~v~~Y~i~~~G 275 (1311)
T KOG1900|consen 253 SRNILYVLSEKGTVSAYDIGGNG 275 (1311)
T ss_pred ccceeeeeccCceEEEEEccCCC
Confidence 889999988 9999999998744
|
|
| >PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=87.40 E-value=1.8 Score=25.36 Aligned_cols=28 Identities=11% Similarity=0.209 Sum_probs=18.7
Q ss_pred ecCeEEEEeCCCCCEEEEe-eCC--CcEEEE
Q psy18231 164 LSGLMHTRFPVDGSYCLTC-GSD--KKIKLW 191 (540)
Q Consensus 164 ~~~v~~v~~spdg~~lat~-~~d--g~i~iw 191 (540)
.+.-....|||||++|+-. ..+ |.-.||
T Consensus 8 ~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 8 PGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp SSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred CccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 3456788999999998844 445 665555
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A .... |
| >PLN02153 epithiospecifier protein | Back alignment and domain information |
|---|
Probab=87.34 E-value=27 Score=33.12 Aligned_cols=65 Identities=8% Similarity=0.035 Sum_probs=32.9
Q ss_pred CCCEEEEeeCC-------CcEEEEcCCCCeeEEEeecC--Ccce---eEEEEeeCCCeEEEeeCC-----CeEEEEEcCC
Q psy18231 175 DGSYCLTCGSD-------KKIKLWNPYRNLLLKTYGGH--AHEV---NDATAACDSSQIASGASD-----KSVILWEVTT 237 (540)
Q Consensus 175 dg~~lat~~~d-------g~i~iwd~~~~~~~~~~~~h--~~~v---~~l~~sp~~~~l~s~s~d-----g~i~iwd~~~ 237 (540)
+++..+.|+.+ ..+.+||+.+.+-.. +... .... ......-++++++.|+.+ ..+.+||+.+
T Consensus 32 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~-~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t 110 (341)
T PLN02153 32 GDKLYSFGGELKPNEHIDKDLYVFDFNTHTWSI-APANGDVPRISCLGVRMVAVGTKLYIFGGRDEKREFSDFYSYDTVK 110 (341)
T ss_pred CCEEEEECCccCCCCceeCcEEEEECCCCEEEE-cCccCCCCCCccCceEEEEECCEEEEECCCCCCCccCcEEEEECCC
Confidence 34555566652 357788877654322 1111 0010 111112256677777754 3577888876
Q ss_pred Cce
Q psy18231 238 GQP 240 (540)
Q Consensus 238 ~~~ 240 (540)
.+-
T Consensus 111 ~~W 113 (341)
T PLN02153 111 NEW 113 (341)
T ss_pred CEE
Confidence 543
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 540 | ||||
| 3emh_A | 318 | Structural Basis Of Wdr5-Mll Interaction Length = 3 | 9e-19 | ||
| 3emh_A | 318 | Structural Basis Of Wdr5-Mll Interaction Length = 3 | 9e-17 | ||
| 4a7j_A | 318 | Symmetric Dimethylation Of H3 Arginine 2 Is A Novel | 9e-19 | ||
| 4a7j_A | 318 | Symmetric Dimethylation Of H3 Arginine 2 Is A Novel | 1e-16 | ||
| 3psl_A | 318 | Fine-Tuning The Stimulation Of Mll1 Methyltransfera | 1e-18 | ||
| 3psl_A | 318 | Fine-Tuning The Stimulation Of Mll1 Methyltransfera | 1e-16 | ||
| 2g99_A | 308 | Structural Basis For The Specific Recognition Of Me | 1e-18 | ||
| 2g99_A | 308 | Structural Basis For The Specific Recognition Of Me | 1e-16 | ||
| 2h9l_A | 329 | Wdr5delta23 Length = 329 | 1e-18 | ||
| 2h9l_A | 329 | Wdr5delta23 Length = 329 | 1e-16 | ||
| 2h9m_A | 313 | Wdr5 In Complex With Unmodified H3k4 Peptide Length | 1e-18 | ||
| 2h9m_A | 313 | Wdr5 In Complex With Unmodified H3k4 Peptide Length | 1e-16 | ||
| 2h13_A | 317 | Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length | 1e-18 | ||
| 2h13_A | 317 | Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length | 1e-16 | ||
| 2g9a_A | 311 | Structural Basis For The Specific Recognition Of Me | 1e-18 | ||
| 2g9a_A | 311 | Structural Basis For The Specific Recognition Of Me | 1e-16 | ||
| 2gnq_A | 336 | Structure Of Wdr5 Length = 336 | 1e-18 | ||
| 2gnq_A | 336 | Structure Of Wdr5 Length = 336 | 1e-16 | ||
| 2xl2_A | 334 | Wdr5 In Complex With An Rbbp5 Peptide Recruited To | 1e-18 | ||
| 2xl2_A | 334 | Wdr5 In Complex With An Rbbp5 Peptide Recruited To | 1e-16 | ||
| 2h68_A | 312 | Histone H3 Recognition And Presentation By The Wdr5 | 1e-18 | ||
| 2h68_A | 312 | Histone H3 Recognition And Presentation By The Wdr5 | 1e-16 | ||
| 3smr_A | 312 | Crystal Structure Of Human Wd Repeat Domain 5 With | 1e-18 | ||
| 3smr_A | 312 | Crystal Structure Of Human Wd Repeat Domain 5 With | 1e-16 | ||
| 2cnx_A | 315 | Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2. | 3e-18 | ||
| 2cnx_A | 315 | Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2. | 6e-17 | ||
| 3n0e_A | 315 | Crystal Structure Of Wdr5 Mutant (W330y) Length = 3 | 3e-18 | ||
| 3n0e_A | 315 | Crystal Structure Of Wdr5 Mutant (W330y) Length = 3 | 1e-15 | ||
| 3n0d_A | 315 | Crystal Structure Of Wdr5 Mutant (W330f) Length = 3 | 3e-18 | ||
| 3n0d_A | 315 | Crystal Structure Of Wdr5 Mutant (W330f) Length = 3 | 2e-15 | ||
| 2co0_A | 315 | Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs | 3e-18 | ||
| 2co0_A | 315 | Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs | 1e-16 | ||
| 3mxx_A | 315 | Crystal Structure Of Wdr5 Mutant (S62a) Length = 31 | 4e-18 | ||
| 3mxx_A | 315 | Crystal Structure Of Wdr5 Mutant (S62a) Length = 31 | 3e-16 | ||
| 2ymu_A | 577 | Structure Of A Highly Repetitive Propeller Structur | 1e-15 | ||
| 2ymu_A | 577 | Structure Of A Highly Repetitive Propeller Structur | 2e-06 | ||
| 2ovp_B | 445 | Structure Of The Skp1-Fbw7 Complex Length = 445 | 2e-13 | ||
| 1p22_A | 435 | Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex | 2e-11 | ||
| 1vyh_C | 410 | Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410 | 4e-11 | ||
| 1vyh_C | 410 | Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410 | 4e-08 | ||
| 3rfg_A | 319 | Crystal Structure Of The Yeast Rack1 Dimer In Space | 4e-11 | ||
| 3izb_a | 319 | Localization Of The Small Subunit Ribosomal Protein | 4e-11 | ||
| 3jyv_R | 313 | Structure Of The 40s Rrna And Proteins And PE TRNA | 4e-11 | ||
| 3rfh_A | 319 | Crystal Structure Of The Yeast Rack1 Dimer In Space | 7e-11 | ||
| 1trj_A | 314 | Homology Model Of Yeast Rack1 Protein Fitted Into 1 | 8e-11 | ||
| 1trj_A | 314 | Homology Model Of Yeast Rack1 Protein Fitted Into 1 | 5e-06 | ||
| 4aow_A | 340 | Crystal Structure Of The Human Rack1 Protein At A R | 1e-10 | ||
| 4aow_A | 340 | Crystal Structure Of The Human Rack1 Protein At A R | 5e-04 | ||
| 2zkq_a | 317 | Structure Of A Mammalian Ribosomal 40s Subunit With | 1e-10 | ||
| 2zkq_a | 317 | Structure Of A Mammalian Ribosomal 40s Subunit With | 5e-04 | ||
| 3shf_A | 1256 | Crystal Structure Of The R265s Mutant Of Full-Lengt | 2e-10 | ||
| 3shf_A | 1256 | Crystal Structure Of The R265s Mutant Of Full-Lengt | 2e-08 | ||
| 3sfz_A | 1249 | Crystal Structure Of Full-Length Murine Apaf-1 Leng | 2e-10 | ||
| 3sfz_A | 1249 | Crystal Structure Of Full-Length Murine Apaf-1 Leng | 2e-08 | ||
| 3frx_A | 319 | Crystal Structure Of The Yeast Orthologue Of Rack1, | 2e-10 | ||
| 3frx_A | 319 | Crystal Structure Of The Yeast Orthologue Of Rack1, | 9e-06 | ||
| 3zey_7 | 318 | High-resolution Cryo-electron Microscopy Structure | 2e-09 | ||
| 3iza_B | 1263 | Structure Of An Apoptosome-Procaspase-9 Card Comple | 6e-09 | ||
| 3iza_B | 1263 | Structure Of An Apoptosome-Procaspase-9 Card Comple | 3e-06 | ||
| 3dm0_A | 694 | Maltose Binding Protein Fusion With Rack1 From A. T | 2e-08 | ||
| 1vhn_A | 318 | Crystal Structure Of A Putative Flavin Oxidoreducta | 2e-07 | ||
| 3mks_B | 464 | Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH | 2e-07 | ||
| 2pbi_B | 354 | The Multifunctional Nature Of Gbeta5RGS9 REVEALED F | 4e-07 | ||
| 2xzm_R | 343 | Crystal Structure Of The Eukaryotic 40s Ribosomal S | 2e-06 | ||
| 1nex_B | 464 | Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Comp | 2e-06 | ||
| 1erj_A | 393 | Crystal Structure Of The C-Terminal Wd40 Domain Of | 3e-05 | ||
| 1erj_A | 393 | Crystal Structure Of The C-Terminal Wd40 Domain Of | 2e-04 | ||
| 3odt_A | 313 | Crystal Structure Of Wd40 Beta Propeller Domain Of | 5e-05 | ||
| 3sn6_B | 351 | Crystal Structure Of The Beta2 Adrenergic Receptor- | 6e-05 | ||
| 1a0r_B | 340 | Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA- | 6e-05 | ||
| 1gg2_B | 340 | G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Bet | 7e-05 | ||
| 2bcj_B | 340 | Crystal Structure Of G Protein-coupled Receptor Kin | 7e-05 | ||
| 1got_B | 340 | Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimer | 7e-05 | ||
| 4gqb_B | 344 | Crystal Structure Of The Human Prmt5:mep50 Complex | 1e-04 | ||
| 3c99_A | 432 | Structural Basis Of Histone H4 Recognition By P55 L | 2e-04 | ||
| 2xyi_A | 430 | Crystal Structure Of Nurf55 In Complex With A H4 Pe | 2e-04 | ||
| 2yba_A | 422 | Crystal Structure Of Nurf55 In Complex With Histone | 2e-04 | ||
| 3b0p_A | 350 | Trna-Dihydrouridine Synthase From Thermus Thermophi | 3e-04 | ||
| 1nr0_A | 611 | Two Seven-Bladed Beta-Propeller Domains Revealed By | 4e-04 | ||
| 3cfs_B | 414 | Structural Basis Of The Interaction Of Rbap46RBAP48 | 4e-04 | ||
| 3iz6_a | 380 | Localization Of The Small Subunit Ribosomal Protein | 8e-04 | ||
| 4a11_B | 408 | Structure Of The Hsddb1-Hscsa Complex Length = 408 | 9e-04 |
| >pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318 | Back alignment and structure |
|
| >pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318 | Back alignment and structure |
|
| >pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318 | Back alignment and structure |
|
| >pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318 | Back alignment and structure |
|
| >pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318 | Back alignment and structure |
|
| >pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318 | Back alignment and structure |
|
| >pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308 | Back alignment and structure |
|
| >pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308 | Back alignment and structure |
|
| >pdb|2H9L|A Chain A, Wdr5delta23 Length = 329 | Back alignment and structure |
|
| >pdb|2H9L|A Chain A, Wdr5delta23 Length = 329 | Back alignment and structure |
|
| >pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313 | Back alignment and structure |
|
| >pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313 | Back alignment and structure |
|
| >pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317 | Back alignment and structure |
|
| >pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317 | Back alignment and structure |
|
| >pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311 | Back alignment and structure |
|
| >pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311 | Back alignment and structure |
|
| >pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336 | Back alignment and structure |
|
| >pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336 | Back alignment and structure |
|
| >pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334 | Back alignment and structure |
|
| >pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334 | Back alignment and structure |
|
| >pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312 | Back alignment and structure |
|
| >pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312 | Back alignment and structure |
|
| >pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312 | Back alignment and structure |
|
| >pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312 | Back alignment and structure |
|
| >pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315 | Back alignment and structure |
|
| >pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315 | Back alignment and structure |
|
| >pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315 | Back alignment and structure |
|
| >pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315 | Back alignment and structure |
|
| >pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315 | Back alignment and structure |
|
| >pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315 | Back alignment and structure |
|
| >pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315 | Back alignment and structure |
|
| >pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315 | Back alignment and structure |
|
| >pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315 | Back alignment and structure |
|
| >pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315 | Back alignment and structure |
|
| >pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577 | Back alignment and structure |
|
| >pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577 | Back alignment and structure |
|
| >pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex Length = 445 | Back alignment and structure |
|
| >pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex: Destruction Motif Binding And Lysine Specificity On The Scfbeta-Trcp1 Ubiquitin Ligase Length = 435 | Back alignment and structure |
|
| >pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410 | Back alignment and structure |
|
| >pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410 | Back alignment and structure |
|
| >pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P63 Length = 319 | Back alignment and structure |
|
| >pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome Length = 319 | Back alignment and structure |
|
| >pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome At 8.9a Resolution Length = 313 | Back alignment and structure |
|
| >pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P21 Length = 319 | Back alignment and structure |
|
| >pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a Cryo-em Map Of Yeast 80s Ribosome Length = 314 | Back alignment and structure |
|
| >pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a Cryo-em Map Of Yeast 80s Ribosome Length = 314 | Back alignment and structure |
|
| >pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A Resolution Of 2.45 Angstrom Length = 340 | Back alignment and structure |
|
| >pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A Resolution Of 2.45 Angstrom Length = 340 | Back alignment and structure |
|
| >pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 317 | Back alignment and structure |
|
| >pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 317 | Back alignment and structure |
|
| >pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine Apaf-1 Length = 1256 | Back alignment and structure |
|
| >pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine Apaf-1 Length = 1256 | Back alignment and structure |
|
| >pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1 Length = 1249 | Back alignment and structure |
|
| >pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1 Length = 1249 | Back alignment and structure |
|
| >pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1. Length = 319 | Back alignment and structure |
|
| >pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1. Length = 319 | Back alignment and structure |
|
| >pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 318 | Back alignment and structure |
|
| >pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana Length = 694 | Back alignment and structure |
|
| >pdb|1VHN|A Chain A, Crystal Structure Of A Putative Flavin Oxidoreductase With Flavin Length = 318 | Back alignment and structure |
|
| >pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN ALLOSTERIC Inhibitor Scf-I2 Length = 464 | Back alignment and structure |
|
| >pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS CRYSTAL Structure Length = 354 | Back alignment and structure |
|
| >pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit In Complex With Initiation Factor 1. This File Contains The 40s Subunit And Initiation Factor For Molecule 1 Length = 343 | Back alignment and structure |
|
| >pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex Length = 464 | Back alignment and structure |
|
| >pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1 Length = 393 | Back alignment and structure |
|
| >pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1 Length = 393 | Back alignment and structure |
|
| >pdb|3ODT|A Chain A, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1 Length = 313 | Back alignment and structure |
|
| >pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs Protein Complex Length = 351 | Back alignment and structure |
|
| >pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma Length = 340 | Back alignment and structure |
|
| >pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1 Gamma_2 With Gdp Bound Length = 340 | Back alignment and structure |
|
| >pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2 In Complex With Galpha-q And Gbetagamma Subunits Length = 340 | Back alignment and structure |
|
| >pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And The Gt-Beta-Gamma Subunits Length = 340 | Back alignment and structure |
|
| >pdb|4GQB|B Chain B, Crystal Structure Of The Human Prmt5:mep50 Complex Length = 344 | Back alignment and structure |
|
| >pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55 Length = 432 | Back alignment and structure |
|
| >pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide Length = 430 | Back alignment and structure |
|
| >pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3 Length = 422 | Back alignment and structure |
|
| >pdb|3B0P|A Chain A, Trna-Dihydrouridine Synthase From Thermus Thermophilus Length = 350 | Back alignment and structure |
|
| >pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The Structure Of A C. Elegans Homologue Of Yeast Actin Interacting Protein 1 (Aip1). Length = 611 | Back alignment and structure |
|
| >pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH Histone H4 Length = 414 | Back alignment and structure |
|
| >pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 380 | Back alignment and structure |
|
| >pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex Length = 408 | Back alignment and structure |
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 540 | |||
| 1vyh_C | 410 | Platelet-activating factor acetylhydrolase IB alph | 100.0 | |
| 2ynn_A | 304 | Coatomer subunit beta'; protein transport, peptide | 100.0 | |
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 100.0 | |
| 1nr0_A | 611 | Actin interacting protein 1; beta propeller, WD40 | 100.0 | |
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 100.0 | |
| 1nr0_A | 611 | Actin interacting protein 1; beta propeller, WD40 | 100.0 | |
| 2pbi_B | 354 | Guanine nucleotide-binding protein subunit beta 5; | 100.0 | |
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 100.0 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 100.0 | |
| 4ery_A | 312 | WD repeat-containing protein 5; WD40, WIN motif, b | 100.0 | |
| 3iz6_a | 380 | 40S ribosomal protein RACK1 (RACK1); eukaryotic ri | 100.0 | |
| 3frx_A | 319 | Guanine nucleotide-binding protein subunit beta- l | 100.0 | |
| 2xzm_R | 343 | RACK1; ribosome, translation; 3.93A {Tetrahymena t | 100.0 | |
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 100.0 | |
| 1erj_A | 393 | Transcriptional repressor TUP1; beta-propeller, tr | 100.0 | |
| 2ymu_A | 577 | WD-40 repeat protein; unknown function, two domain | 100.0 | |
| 2hes_X | 330 | YDR267CP; beta-propeller, WD40 repeat, biosyntheti | 100.0 | |
| 1vyh_C | 410 | Platelet-activating factor acetylhydrolase IB alph | 100.0 | |
| 2ymu_A | 577 | WD-40 repeat protein; unknown function, two domain | 100.0 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 100.0 | |
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 100.0 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 100.0 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 100.0 | |
| 4aow_A | 340 | Guanine nucleotide-binding protein subunit beta-2; | 100.0 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 100.0 | |
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 100.0 | |
| 2oaj_A | 902 | Protein SNI1; WD40 repeat, beta propeller, endocyt | 100.0 | |
| 1pgu_A | 615 | Actin interacting protein 1; WD repeat, seven-blad | 100.0 | |
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 100.0 | |
| 3dm0_A | 694 | Maltose-binding periplasmic protein fused with RAC | 100.0 | |
| 2ynn_A | 304 | Coatomer subunit beta'; protein transport, peptide | 100.0 | |
| 3ei3_B | 383 | DNA damage-binding protein 2; UV-damage, DDB, nucl | 100.0 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 100.0 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 100.0 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 100.0 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 100.0 | |
| 2pbi_B | 354 | Guanine nucleotide-binding protein subunit beta 5; | 100.0 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 100.0 | |
| 3frx_A | 319 | Guanine nucleotide-binding protein subunit beta- l | 100.0 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 100.0 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 100.0 | |
| 3k26_A | 366 | Polycomb protein EED; WD40, structural genomics, N | 100.0 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 100.0 | |
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 100.0 | |
| 3odt_A | 313 | Protein DOA1; ubiquitin, nuclear protein; HET: MSE | 100.0 | |
| 1pgu_A | 615 | Actin interacting protein 1; WD repeat, seven-blad | 100.0 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 100.0 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 100.0 | |
| 2hes_X | 330 | YDR267CP; beta-propeller, WD40 repeat, biosyntheti | 100.0 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 100.0 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 100.0 | |
| 2j04_B | 524 | YDR362CP, TAU91; beta propeller, type 2 promoters, | 100.0 | |
| 3iz6_a | 380 | 40S ribosomal protein RACK1 (RACK1); eukaryotic ri | 100.0 | |
| 3dw8_B | 447 | Serine/threonine-protein phosphatase 2A 55 kDa RE | 100.0 | |
| 2xzm_R | 343 | RACK1; ribosome, translation; 3.93A {Tetrahymena t | 100.0 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 100.0 | |
| 2oaj_A | 902 | Protein SNI1; WD40 repeat, beta propeller, endocyt | 100.0 | |
| 3gre_A | 437 | Serine/threonine-protein kinase VPS15; seven-blade | 100.0 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 100.0 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 100.0 | |
| 1yfq_A | 342 | Cell cycle arrest protein BUB3; WD repeat WD40 rep | 100.0 | |
| 2pm7_B | 297 | Protein transport protein SEC13, protein transport | 100.0 | |
| 4ery_A | 312 | WD repeat-containing protein 5; WD40, WIN motif, b | 100.0 | |
| 1erj_A | 393 | Transcriptional repressor TUP1; beta-propeller, tr | 100.0 | |
| 2pm7_B | 297 | Protein transport protein SEC13, protein transport | 100.0 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 100.0 | |
| 4h5i_A | 365 | Guanine nucleotide-exchange factor SEC12; copii ve | 100.0 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 100.0 | |
| 4gga_A | 420 | P55CDC, cell division cycle protein 20 homolog; ce | 100.0 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 100.0 | |
| 4ggc_A | 318 | P55CDC, cell division cycle protein 20 homolog; ce | 100.0 | |
| 3mmy_A | 368 | MRNA export factor; mRNA export, nuclear protein; | 100.0 | |
| 3bg1_A | 316 | Protein SEC13 homolog; NPC, transport, WD repeat, | 100.0 | |
| 4gga_A | 420 | P55CDC, cell division cycle protein 20 homolog; ce | 100.0 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 100.0 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 100.0 | |
| 3k26_A | 366 | Polycomb protein EED; WD40, structural genomics, N | 100.0 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 100.0 | |
| 3f3f_A | 351 | Nucleoporin SEH1; structural protein, protein comp | 100.0 | |
| 3dm0_A | 694 | Maltose-binding periplasmic protein fused with RAC | 100.0 | |
| 3bg1_A | 316 | Protein SEC13 homolog; NPC, transport, WD repeat, | 100.0 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 100.0 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 100.0 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 100.0 | |
| 4aow_A | 340 | Guanine nucleotide-binding protein subunit beta-2; | 100.0 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 100.0 | |
| 2j04_B | 524 | YDR362CP, TAU91; beta propeller, type 2 promoters, | 100.0 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 100.0 | |
| 4ggc_A | 318 | P55CDC, cell division cycle protein 20 homolog; ce | 100.0 | |
| 3ei3_B | 383 | DNA damage-binding protein 2; UV-damage, DDB, nucl | 100.0 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 100.0 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 100.0 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 100.0 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 100.0 | |
| 2vdu_B | 450 | TRNA (guanine-N(7)-)-methyltransferase- associated | 100.0 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 100.0 | |
| 3vu4_A | 355 | KMHSV2; beta-propeller fold, protein transport; 2. | 100.0 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 100.0 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 100.0 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 100.0 | |
| 3gre_A | 437 | Serine/threonine-protein kinase VPS15; seven-blade | 100.0 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 100.0 | |
| 2j04_A | 588 | TAU60, YPL007P, hypothetical protein YPL007C; beta | 100.0 | |
| 3odt_A | 313 | Protein DOA1; ubiquitin, nuclear protein; HET: MSE | 100.0 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 100.0 | |
| 2j04_A | 588 | TAU60, YPL007P, hypothetical protein YPL007C; beta | 100.0 | |
| 2xyi_A | 430 | Probable histone-binding protein CAF1; transcripti | 100.0 | |
| 4h5i_A | 365 | Guanine nucleotide-exchange factor SEC12; copii ve | 100.0 | |
| 4gq1_A | 393 | NUP37; propeller, transport protein; 2.40A {Schizo | 100.0 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 100.0 | |
| 3dw8_B | 447 | Serine/threonine-protein phosphatase 2A 55 kDa RE | 100.0 | |
| 3lrv_A | 343 | PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu | 100.0 | |
| 1yfq_A | 342 | Cell cycle arrest protein BUB3; WD repeat WD40 rep | 100.0 | |
| 2xyi_A | 430 | Probable histone-binding protein CAF1; transcripti | 100.0 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 100.0 | |
| 2w18_A | 356 | PALB2, fancn, partner and localizer of BRCA2; fanc | 100.0 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 100.0 | |
| 3vu4_A | 355 | KMHSV2; beta-propeller fold, protein transport; 2. | 100.0 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 100.0 | |
| 3mmy_A | 368 | MRNA export factor; mRNA export, nuclear protein; | 100.0 | |
| 3f3f_A | 351 | Nucleoporin SEH1; structural protein, protein comp | 100.0 | |
| 2w18_A | 356 | PALB2, fancn, partner and localizer of BRCA2; fanc | 100.0 | |
| 2vdu_B | 450 | TRNA (guanine-N(7)-)-methyltransferase- associated | 99.98 | |
| 3lrv_A | 343 | PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu | 99.98 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 99.97 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 99.97 | |
| 4gq1_A | 393 | NUP37; propeller, transport protein; 2.40A {Schizo | 99.97 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 99.96 | |
| 2hqs_A | 415 | Protein TOLB; TOLB, PAL, TOL, transport protein-li | 99.96 | |
| 2hqs_A | 415 | Protein TOLB; TOLB, PAL, TOL, transport protein-li | 99.96 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 99.95 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 99.95 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 99.95 | |
| 1k32_A | 1045 | Tricorn protease; protein degradation, substrate g | 99.95 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 99.94 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 99.94 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 99.94 | |
| 1xfd_A | 723 | DIP, dipeptidyl aminopeptidase-like protein 6, dip | 99.94 | |
| 1k32_A | 1045 | Tricorn protease; protein degradation, substrate g | 99.94 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 99.94 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 99.93 | |
| 1pby_B | 337 | Quinohemoprotein amine dehydrogenase 40 kDa subuni | 99.93 | |
| 1xfd_A | 723 | DIP, dipeptidyl aminopeptidase-like protein 6, dip | 99.93 | |
| 1jmx_B | 349 | Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; | 99.92 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 99.92 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 99.92 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 99.91 | |
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 99.91 | |
| 1pby_B | 337 | Quinohemoprotein amine dehydrogenase 40 kDa subuni | 99.91 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 99.91 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 99.9 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 99.9 | |
| 1z68_A | 719 | Fibroblast activation protein, alpha subunit; sepr | 99.9 | |
| 1z68_A | 719 | Fibroblast activation protein, alpha subunit; sepr | 99.89 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 99.89 | |
| 3pe7_A | 388 | Oligogalacturonate lyase; seven-bladed beta-propel | 99.89 | |
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 99.89 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 99.88 | |
| 2oit_A | 434 | Nucleoporin 214KDA; NH2 terminal domain of NUP214/ | 99.87 | |
| 2oit_A | 434 | Nucleoporin 214KDA; NH2 terminal domain of NUP214/ | 99.87 | |
| 1jmx_B | 349 | Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; | 99.86 | |
| 1jof_A | 365 | Carboxy-CIS,CIS-muconate cyclase; beta-propeller, | 99.86 | |
| 1jof_A | 365 | Carboxy-CIS,CIS-muconate cyclase; beta-propeller, | 99.85 | |
| 2oiz_A | 361 | Aromatic amine dehydrogenase, large subunit; oxido | 99.85 | |
| 4a5s_A | 740 | Dipeptidyl peptidase 4 soluble form; hydrolase, ty | 99.85 | |
| 3c5m_A | 396 | Oligogalacturonate lyase; blade-shaped beta-propel | 99.85 | |
| 2oiz_A | 361 | Aromatic amine dehydrogenase, large subunit; oxido | 99.84 | |
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 99.82 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 99.82 | |
| 2dg1_A | 333 | DRP35, lactonase; beta propeller, hydrolase; 1.72A | 99.81 | |
| 3fvz_A | 329 | Peptidyl-glycine alpha-amidating monooxygenase; be | 99.81 | |
| 3pe7_A | 388 | Oligogalacturonate lyase; seven-bladed beta-propel | 99.81 | |
| 2gop_A | 347 | Trilobed protease; beta propeller, open velcro, hy | 99.79 | |
| 4a5s_A | 740 | Dipeptidyl peptidase 4 soluble form; hydrolase, ty | 99.79 | |
| 3c5m_A | 396 | Oligogalacturonate lyase; blade-shaped beta-propel | 99.76 | |
| 2dg1_A | 333 | DRP35, lactonase; beta propeller, hydrolase; 1.72A | 99.76 | |
| 1qks_A | 567 | Cytochrome CD1 nitrite reductase; enzyme, oxidored | 99.75 | |
| 2xdw_A | 710 | Prolyl endopeptidase; alpha/beta-hydrolase, amnesi | 99.75 | |
| 3e5z_A | 296 | Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco | 99.74 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 99.74 | |
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 99.73 | |
| 1vhn_A | 318 | Putative flavin oxidoreducatase; structural genomi | 99.73 | |
| 1qks_A | 567 | Cytochrome CD1 nitrite reductase; enzyme, oxidored | 99.73 | |
| 2bkl_A | 695 | Prolyl endopeptidase; mechanistic study, celiac sp | 99.73 | |
| 2z2n_A | 299 | Virginiamycin B lyase; seven-bladed beta-propeller | 99.73 | |
| 2xdw_A | 710 | Prolyl endopeptidase; alpha/beta-hydrolase, amnesi | 99.72 | |
| 3b0p_A | 350 | TRNA-dihydrouridine synthase; TIM barrel, oxidored | 99.72 | |
| 2mad_H | 373 | Methylamine dehydrogenase (heavy subunit); oxidore | 99.72 | |
| 2bkl_A | 695 | Prolyl endopeptidase; mechanistic study, celiac sp | 99.71 | |
| 3no2_A | 276 | Uncharacterized protein; six-bladed beta-propeller | 99.71 | |
| 2gop_A | 347 | Trilobed protease; beta propeller, open velcro, hy | 99.71 | |
| 3e5z_A | 296 | Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco | 99.7 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 99.7 | |
| 3sjl_D | 386 | Methylamine dehydrogenase heavy chain; MAUG, C-hem | 99.69 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 99.68 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 99.66 | |
| 3no2_A | 276 | Uncharacterized protein; six-bladed beta-propeller | 99.64 | |
| 3sjl_D | 386 | Methylamine dehydrogenase heavy chain; MAUG, C-hem | 99.64 | |
| 1yr2_A | 741 | Prolyl oligopeptidase; prolyl endopeptidase, mecha | 99.63 | |
| 3c75_H | 426 | MADH, methylamine dehydrogenase heavy chain; coppe | 99.63 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 99.63 | |
| 2qc5_A | 300 | Streptogramin B lactonase; beta propeller, lyase; | 99.62 | |
| 3fvz_A | 329 | Peptidyl-glycine alpha-amidating monooxygenase; be | 99.62 | |
| 1pjx_A | 314 | Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries | 99.6 | |
| 2mad_H | 373 | Methylamine dehydrogenase (heavy subunit); oxidore | 99.59 | |
| 1pjx_A | 314 | Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries | 99.59 | |
| 1yr2_A | 741 | Prolyl oligopeptidase; prolyl endopeptidase, mecha | 99.58 | |
| 2z2n_A | 299 | Virginiamycin B lyase; seven-bladed beta-propeller | 99.55 | |
| 3hrp_A | 409 | Uncharacterized protein; NP_812590.1, structural g | 99.52 | |
| 3hrp_A | 409 | Uncharacterized protein; NP_812590.1, structural g | 99.51 | |
| 2qe8_A | 343 | Uncharacterized protein; structural genomics, join | 99.51 | |
| 3c75_H | 426 | MADH, methylamine dehydrogenase heavy chain; coppe | 99.49 | |
| 1kb0_A | 677 | Quinohemoprotein alcohol dehydrogenase; beta-prope | 99.49 | |
| 1xip_A | 388 | Nucleoporin NUP159; beta-propeller, transport prot | 99.48 | |
| 3q7m_A | 376 | Lipoprotein YFGL, BAMB; beta-propeller, BAM comple | 99.48 | |
| 3g4e_A | 297 | Regucalcin; six bladed beta-propeller, gluconolcat | 99.46 | |
| 1xip_A | 388 | Nucleoporin NUP159; beta-propeller, transport prot | 99.46 | |
| 1yiq_A | 689 | Quinohemoprotein alcohol dehydrogenase; electron t | 99.45 | |
| 3iuj_A | 693 | Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas | 99.45 | |
| 1mda_H | 368 | Methylamine dehydrogenase (heavy subunit); electro | 99.44 | |
| 3dr2_A | 305 | Exported gluconolactonase; gluconolactonase SMP-30 | 99.43 | |
| 2qc5_A | 300 | Streptogramin B lactonase; beta propeller, lyase; | 99.4 | |
| 3g4e_A | 297 | Regucalcin; six bladed beta-propeller, gluconolcat | 99.39 | |
| 3iuj_A | 693 | Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas | 99.37 | |
| 1kb0_A | 677 | Quinohemoprotein alcohol dehydrogenase; beta-prope | 99.37 | |
| 2ghs_A | 326 | AGR_C_1268P; regucalcin, structural genomics, join | 99.37 | |
| 2hz6_A | 369 | Endoplasmic reticulum to nucleus signalling 1 isof | 99.37 | |
| 3dr2_A | 305 | Exported gluconolactonase; gluconolactonase SMP-30 | 99.36 | |
| 1yiq_A | 689 | Quinohemoprotein alcohol dehydrogenase; electron t | 99.36 | |
| 3q7m_A | 376 | Lipoprotein YFGL, BAMB; beta-propeller, BAM comple | 99.34 | |
| 1mda_H | 368 | Methylamine dehydrogenase (heavy subunit); electro | 99.34 | |
| 2ghs_A | 326 | AGR_C_1268P; regucalcin, structural genomics, join | 99.32 | |
| 1fwx_A | 595 | Nitrous oxide reductase; beta-propeller domain, cu | 99.31 | |
| 2hz6_A | 369 | Endoplasmic reticulum to nucleus signalling 1 isof | 99.3 | |
| 3hxj_A | 330 | Pyrrolo-quinoline quinone; all beta protein. incom | 99.26 | |
| 2qe8_A | 343 | Uncharacterized protein; structural genomics, join | 99.15 | |
| 3hxj_A | 330 | Pyrrolo-quinoline quinone; all beta protein. incom | 99.14 | |
| 1kv9_A | 668 | Type II quinohemoprotein alcohol dehydrogenase; el | 99.14 | |
| 1kv9_A | 668 | Type II quinohemoprotein alcohol dehydrogenase; el | 99.13 | |
| 2ece_A | 462 | 462AA long hypothetical selenium-binding protein; | 99.13 | |
| 2ece_A | 462 | 462AA long hypothetical selenium-binding protein; | 99.1 | |
| 4a2l_A | 795 | BT_4663, two-component system sensor histidine kin | 99.03 | |
| 2iwa_A | 266 | Glutamine cyclotransferase; pyroglutamate, acyltra | 99.02 | |
| 2ad6_A | 571 | Methanol dehydrogenase subunit 1; PQQ configuratio | 99.01 | |
| 1w6s_A | 599 | Methanol dehydrogenase subunit 1; anisotropic, ele | 99.0 | |
| 1npe_A | 267 | Nidogen, entactin; glycoprotein, basement membrane | 98.97 | |
| 1k3i_A | 656 | Galactose oxidase precursor; blade beta propeller, | 98.95 | |
| 2iwa_A | 266 | Glutamine cyclotransferase; pyroglutamate, acyltra | 98.95 | |
| 1w6s_A | 599 | Methanol dehydrogenase subunit 1; anisotropic, ele | 98.92 | |
| 2ad6_A | 571 | Methanol dehydrogenase subunit 1; PQQ configuratio | 98.92 | |
| 1flg_A | 582 | Protein (quinoprotein ethanol dehydrogenase); supe | 98.88 | |
| 3nol_A | 262 | Glutamine cyclotransferase; beta-propeller, glutam | 98.87 | |
| 4a2l_A | 795 | BT_4663, two-component system sensor histidine kin | 98.87 | |
| 1fwx_A | 595 | Nitrous oxide reductase; beta-propeller domain, cu | 98.81 | |
| 1flg_A | 582 | Protein (quinoprotein ethanol dehydrogenase); supe | 98.79 | |
| 3nol_A | 262 | Glutamine cyclotransferase; beta-propeller, glutam | 98.78 | |
| 1npe_A | 267 | Nidogen, entactin; glycoprotein, basement membrane | 98.78 | |
| 3v9f_A | 781 | Two-component system sensor histidine kinase/RESP | 98.76 | |
| 2fp8_A | 322 | Strictosidine synthase; six bladed beta propeller | 98.73 | |
| 3v9f_A | 781 | Two-component system sensor histidine kinase/RESP | 98.73 | |
| 3nok_A | 268 | Glutaminyl cyclase; beta-propeller, cyclotransfera | 98.72 | |
| 3mbr_X | 243 | Glutamine cyclotransferase; beta-propeller; 1.44A | 98.71 | |
| 2fp8_A | 322 | Strictosidine synthase; six bladed beta propeller | 98.69 | |
| 3nok_A | 268 | Glutaminyl cyclase; beta-propeller, cyclotransfera | 98.65 | |
| 2p4o_A | 306 | Hypothetical protein; putative lactonase, structur | 98.63 | |
| 2p4o_A | 306 | Hypothetical protein; putative lactonase, structur | 98.63 | |
| 3v64_C | 349 | Agrin; beta propeller, laminin-G, signaling, prote | 98.52 | |
| 2xe4_A | 751 | Oligopeptidase B; hydrolase-inhibitor complex, hyd | 98.52 | |
| 3mbr_X | 243 | Glutamine cyclotransferase; beta-propeller; 1.44A | 98.52 | |
| 2xbg_A | 327 | YCF48-like protein; photosynthesis, photosystem II | 98.47 | |
| 1k3i_A | 656 | Galactose oxidase precursor; blade beta propeller, | 98.45 | |
| 3qqz_A | 255 | Putative uncharacterized protein YJIK; MCSG, PSI-2 | 98.43 | |
| 3v65_B | 386 | Low-density lipoprotein receptor-related protein; | 98.43 | |
| 2r14_A | 377 | Morphinone reductase; H-tunnelling, flavoprotein, | 98.38 | |
| 1ijq_A | 316 | LDL receptor, low-density lipoprotein receptor; be | 98.33 | |
| 2xe4_A | 751 | Oligopeptidase B; hydrolase-inhibitor complex, hyd | 98.31 | |
| 3p5b_L | 400 | Low density lipoprotein receptor variant; B-propel | 98.3 | |
| 1vyr_A | 364 | Pentaerythritol tetranitrate reductase; oxidoreduc | 98.29 | |
| 3s94_A | 619 | LRP-6, low-density lipoprotein receptor-related pr | 98.27 | |
| 3tc9_A | 430 | Hypothetical hydrolase; 6-bladed beta-propeller, i | 98.26 | |
| 1z41_A | 338 | YQJM, probable NADH-dependent flavin oxidoreductas | 98.26 | |
| 3v64_C | 349 | Agrin; beta propeller, laminin-G, signaling, prote | 98.24 | |
| 3v65_B | 386 | Low-density lipoprotein receptor-related protein; | 98.23 | |
| 3qqz_A | 255 | Putative uncharacterized protein YJIK; MCSG, PSI-2 | 98.18 | |
| 2gou_A | 365 | Oxidoreductase, FMN-binding; OLD yeallow enzyme, f | 98.18 | |
| 4hw6_A | 433 | Hypothetical protein, IPT/TIG domain protein; puta | 98.17 | |
| 1ijq_A | 316 | LDL receptor, low-density lipoprotein receptor; be | 98.16 | |
| 3sov_A | 318 | LRP-6, low-density lipoprotein receptor-related pr | 98.16 | |
| 2nli_A | 368 | Lactate oxidase; flavoenzyme, FMN, D-lactate, oxid | 98.13 | |
| 3p5b_L | 400 | Low density lipoprotein receptor variant; B-propel | 98.11 | |
| 4hw6_A | 433 | Hypothetical protein, IPT/TIG domain protein; puta | 98.11 | |
| 1icp_A | 376 | OPR1, 12-oxophytodienoate reductase 1; beta-alpha- | 98.1 | |
| 2nzl_A | 392 | Hydroxyacid oxidase 1; HAOX1, glycolate oxidase, G | 98.1 | |
| 3amr_A | 355 | 3-phytase; beta-propeller, phytate, MYO-inositol h | 98.08 | |
| 3tc9_A | 430 | Hypothetical hydrolase; 6-bladed beta-propeller, i | 98.07 | |
| 2xzh_A | 365 | Clathrin heavy chain 1; endocytosis, endocytosis i | 98.06 | |
| 1jub_A | 311 | Dihydroorotate dehydrogenase A; homodimer, alpha-b | 98.05 | |
| 1gox_A | 370 | (S)-2-hydroxy-acid oxidase, peroxisomal; oxidoredu | 98.01 | |
| 3amr_A | 355 | 3-phytase; beta-propeller, phytate, MYO-inositol h | 97.98 | |
| 3m0c_C | 791 | LDL receptor, low-density lipoprotein receptor; pr | 97.96 | |
| 3sov_A | 318 | LRP-6, low-density lipoprotein receptor-related pr | 97.96 | |
| 2ism_A | 352 | Putative oxidoreductase; BL41XU spring-8, bladed b | 97.95 | |
| 2hsa_B | 402 | 12-oxophytodienoate reductase 3; alpha beta 8 barr | 97.92 | |
| 3ei3_A | 1158 | DNA damage-binding protein 1; UV-damage, DDB, nucl | 97.92 | |
| 3kya_A | 496 | Putative phosphatase; structural genomics, joint c | 97.92 | |
| 1bpo_A | 494 | Protein (clathrin); clathrin endocytosis beta-prop | 97.91 | |
| 2xbg_A | 327 | YCF48-like protein; photosynthesis, photosystem II | 97.91 | |
| 1p0k_A | 349 | Isopentenyl-diphosphate delta-isomerase; terpene b | 97.9 | |
| 2vpj_A | 301 | Kelch-like protein 12; adaptor protein, WNT signal | 97.89 | |
| 1ps9_A | 671 | 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel | 97.82 | |
| 2e6f_A | 314 | Dihydroorotate dehydrogenase; chagas disease, pyri | 97.82 | |
| 2p9w_A | 334 | MAL S 1 allergenic protein; beta propeller; 1.35A | 97.79 | |
| 2vpj_A | 301 | Kelch-like protein 12; adaptor protein, WNT signal | 97.77 | |
| 2xn4_A | 302 | Kelch-like protein 2; structural protein, cytoskel | 97.75 | |
| 4a0p_A | 628 | LRP6, LRP-6, low-density lipoprotein receptor-rela | 97.75 | |
| 4a0p_A | 628 | LRP6, LRP-6, low-density lipoprotein receptor-rela | 97.73 | |
| 3m0c_C | 791 | LDL receptor, low-density lipoprotein receptor; pr | 97.71 | |
| 3ii7_A | 306 | Kelch-like protein 7; protein-binding, kelch-repea | 97.7 | |
| 1n7d_A | 699 | LDL receptor, low-density lipoprotein receptor; fa | 97.65 | |
| 2p9w_A | 334 | MAL S 1 allergenic protein; beta propeller; 1.35A | 97.65 | |
| 3a9g_A | 354 | Putative uncharacterized protein; PQQ dependent de | 97.64 | |
| 3s94_A | 619 | LRP-6, low-density lipoprotein receptor-related pr | 97.63 | |
| 1ep3_A | 311 | Dihydroorotate dehydrogenase B (PYRD subunit); het | 97.58 | |
| 1f76_A | 336 | Dihydroorotate dehydrogenase; monomer, alpha-beta- | 97.56 | |
| 1vcf_A | 332 | Isopentenyl-diphosphate delta-isomerase; TIM barre | 97.55 | |
| 1kbi_A | 511 | Cytochrome B2, L-LCR; flavocytochrome B2, electron | 97.54 | |
| 1n7d_A | 699 | LDL receptor, low-density lipoprotein receptor; fa | 97.53 | |
| 1zgk_A | 308 | Kelch-like ECH-associated protein 1; beta-propelle | 97.47 | |
| 3kya_A | 496 | Putative phosphatase; structural genomics, joint c | 97.47 | |
| 1gte_A | 1025 | Dihydropyrimidine dehydrogenase; electron transfer | 97.47 | |
| 2xn4_A | 302 | Kelch-like protein 2; structural protein, cytoskel | 97.46 | |
| 3k30_A | 690 | Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi | 97.46 | |
| 3ii7_A | 306 | Kelch-like protein 7; protein-binding, kelch-repea | 97.41 | |
| 2z6i_A | 332 | Trans-2-enoyl-ACP reductase II; fatty acid synthes | 97.38 | |
| 3oix_A | 345 | Putative dihydroorotate dehydrogenase; dihydrooro | 97.36 | |
| 1o94_A | 729 | Tmadh, trimethylamine dehydrogenase; electron tran | 97.35 | |
| 1tv5_A | 443 | Dhodehase, dihydroorotate dehydrogenase homolog, m | 97.33 | |
| 4asc_A | 315 | Kelch repeat and BTB domain-containing protein 5; | 97.27 | |
| 3vkj_A | 368 | Isopentenyl-diphosphate delta-isomerase; type 2 is | 97.24 | |
| 1zgk_A | 308 | Kelch-like ECH-associated protein 1; beta-propelle | 97.24 | |
| 3bo9_A | 326 | Putative nitroalkan dioxygenase; TM0800, structura | 97.15 | |
| 4ef8_A | 354 | Dihydroorotate dehydrogenase; phenyl isothiocyanat | 97.15 | |
| 3sre_A | 355 | PON1, serum paraoxonase; directed evolution, 6-bla | 97.11 | |
| 2xzh_A | 365 | Clathrin heavy chain 1; endocytosis, endocytosis i | 97.08 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 97.0 | |
| 4asc_A | 315 | Kelch repeat and BTB domain-containing protein 5; | 96.98 | |
| 2woz_A | 318 | Kelch repeat and BTB domain-containing protein 10; | 96.88 | |
| 3pbp_A | 452 | Nucleoporin NUP82; beta-propeller, mRNA export, mR | 96.82 | |
| 3ott_A | 758 | Two-component system sensor histidine kinase; beta | 96.8 | |
| 3sre_A | 355 | PON1, serum paraoxonase; directed evolution, 6-bla | 96.74 | |
| 2uvk_A | 357 | YJHT; unknown function, hypothetical protein, sial | 96.65 | |
| 1bpo_A | 494 | Protein (clathrin); clathrin endocytosis beta-prop | 96.57 | |
| 2woz_A | 318 | Kelch repeat and BTB domain-containing protein 10; | 96.54 | |
| 3das_A | 347 | Putative oxidoreductase; aldose sugar dehydrogenas | 96.54 | |
| 3pbp_A | 452 | Nucleoporin NUP82; beta-propeller, mRNA export, mR | 96.51 | |
| 3ott_A | 758 | Two-component system sensor histidine kinase; beta | 96.51 | |
| 2g8s_A | 353 | Glucose/sorbosone dehydrogenases; bladed beta-prop | 96.44 | |
| 2be1_A | 339 | Serine/threonine-protein kinase/endoribonuclease; | 96.41 | |
| 2uvk_A | 357 | YJHT; unknown function, hypothetical protein, sial | 96.41 | |
| 3sbq_A | 638 | Nitrous-oxide reductase; beta-propeller, cupredoxi | 96.37 | |
| 3ei3_A | 1158 | DNA damage-binding protein 1; UV-damage, DDB, nucl | 96.27 | |
| 1tl2_A | 236 | L10, protein (tachylectin-2); animal lectin, horse | 96.26 | |
| 2gjl_A | 328 | Hypothetical protein PA1024; 2-nitropropane dioxyg | 96.15 | |
| 1p4c_A | 380 | L(+)-mandelate dehydrogenase; TIM barrel, hydroxy | 96.0 | |
| 3zwt_A | 367 | Dihydroorotate dehydrogenase (quinone), mitochond; | 95.92 | |
| 2g8s_A | 353 | Glucose/sorbosone dehydrogenases; bladed beta-prop | 95.9 | |
| 3gr7_A | 340 | NADPH dehydrogenase; flavin, FMN, beta-alpha-barre | 95.88 | |
| 3bw2_A | 369 | 2-nitropropane dioxygenase; TIM barrel, oxidoreduc | 95.56 | |
| 3kru_A | 343 | NADH:flavin oxidoreductase/NADH oxidase; homotetra | 95.42 | |
| 2ism_A | 352 | Putative oxidoreductase; BL41XU spring-8, bladed b | 95.4 | |
| 2zwa_A | 695 | Leucine carboxyl methyltransferase 2; HET: SAH CIT | 95.31 | |
| 3l5a_A | 419 | NADH/flavin oxidoreductase/NADH oxidase; OLD yello | 95.25 | |
| 3sr7_A | 365 | Isopentenyl-diphosphate delta-isomerase; isopenten | 95.05 | |
| 3hgj_A | 349 | Chromate reductase; TIM barrel, oxidoreductase; HE | 94.85 | |
| 1tl2_A | 236 | L10, protein (tachylectin-2); animal lectin, horse | 94.84 | |
| 3a9g_A | 354 | Putative uncharacterized protein; PQQ dependent de | 94.8 | |
| 3i65_A | 415 | Dihydroorotate dehydrogenase homolog, mitochondria | 94.76 | |
| 1cru_A | 454 | Protein (soluble quinoprotein glucose dehydrogena; | 94.65 | |
| 1ypf_A | 336 | GMP reductase; GUAC, purines, pyrimidines, nucleos | 94.58 | |
| 3s25_A | 302 | Hypothetical 7-bladed beta-propeller-like protein; | 94.5 | |
| 2zwa_A | 695 | Leucine carboxyl methyltransferase 2; HET: SAH CIT | 94.4 | |
| 2be1_A | 339 | Serine/threonine-protein kinase/endoribonuclease; | 94.36 | |
| 3gka_A | 361 | N-ethylmaleimide reductase; decode biostructures, | 94.36 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 94.33 | |
| 4ab4_A | 362 | Xenobiotic reductase B; oxidoreductase, OLD yellow | 94.15 | |
| 3das_A | 347 | Putative oxidoreductase; aldose sugar dehydrogenas | 93.73 | |
| 3s25_A | 302 | Hypothetical 7-bladed beta-propeller-like protein; | 93.54 | |
| 1mzh_A | 225 | Deoxyribose-phosphate aldolase; alpha-beta barrel, | 93.5 | |
| 3tjl_A | 407 | NADPH dehydrogenase; OLD yellow enzyme, flavin mon | 93.43 | |
| 1cru_A | 454 | Protein (soluble quinoprotein glucose dehydrogena; | 93.01 | |
| 3l5l_A | 363 | Xenobiotic reductase A; TIM barrel, oxidoreductase | 91.7 | |
| 2wg3_C | 463 | Hedgehog-interacting protein; lipoprotein, develop | 91.64 | |
| 2wg3_C | 463 | Hedgehog-interacting protein; lipoprotein, develop | 91.14 | |
| 3r2g_A | 361 | Inosine 5'-monophosphate dehydrogenase; structural | 90.91 | |
| 3tjx_A | 354 | Dihydroorotate dehydrogenase; PYRD, dhodh, lmdhodh | 90.7 | |
| 3qhy_B | 282 | Beta-lactamase inhibitory protein II; enyzme-inhib | 90.67 | |
| 3qhy_B | 282 | Beta-lactamase inhibitory protein II; enyzme-inhib | 87.79 | |
| 3sbq_A | 638 | Nitrous-oxide reductase; beta-propeller, cupredoxi | 87.2 | |
| 2qr6_A | 393 | IMP dehydrogenase/GMP reductase; NP_599840.1, G re | 86.56 | |
| 3khj_A | 361 | Inosine-5-monophosphate dehydrogenase; enzyme-inhi | 86.53 | |
| 1eep_A | 404 | Inosine 5'-monophosphate dehydrogenase; alpha-beta | 86.5 | |
| 4a3u_A | 358 | NCR, NADH\:flavin oxidoreductase/NADH oxidase; HET | 84.04 | |
| 4hvt_A | 711 | Ritya.17583.B, post-proline cleaving enzyme; ssgci | 83.49 | |
| 4gq2_M | 950 | Nucleoporin NUP120; beta propeller alpha helical, | 82.78 | |
| 4gbu_A | 400 | NADPH dehydrogenase 1; alpha/beta barrel, enenone | 80.2 |
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-49 Score=387.07 Aligned_cols=283 Identities=20% Similarity=0.299 Sum_probs=264.0
Q ss_pred eeeeeecCeEEEEeCCCCCEEEEeeCCCcEEEEcCCCCeeEEEeecCCcceeEEEEeeCCCeEEEeeCCCeEEEEEcCCC
Q psy18231 159 RELFVLSGLMHTRFPVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTG 238 (540)
Q Consensus 159 ~~~~h~~~v~~v~~spdg~~lat~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~ 238 (540)
...+|.++|++++|+|++++|++|+.||+|+|||+.+++....+.+|.+.|++++|+|++++|++|+.|++|++||+.++
T Consensus 103 ~l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~ 182 (410)
T 1vyh_C 103 ALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGF 182 (410)
T ss_dssp EEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSS
T ss_pred eecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC
Confidence 45679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeEeccccCCceeEEEECCCCCEEEEecCCCcEEEEEecCCCCCCcchhhhhHhhhhcCCceeEEEEeecccccccccC
Q psy18231 239 QPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHLSNG 318 (540)
Q Consensus 239 ~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (540)
+++..+.+|...|.+++|+|++++|++|+.|++|++||++++..
T Consensus 183 ~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~------------------------------------ 226 (410)
T 1vyh_C 183 ECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYC------------------------------------ 226 (410)
T ss_dssp CEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCE------------------------------------
T ss_pred ceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcE------------------------------------
Confidence 99999999999999999999999999999999999999987651
Q ss_pred ceeeEEEeeeecccccceeeeeeccceeEEEeecccceecccccccccccchhhhhhcccccEEEEEecC--CeeEeeeC
Q psy18231 319 LLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEARDSITSVHVSD--HEILTASL 396 (540)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~--~~l~~~~~ 396 (540)
+..+.+|...|.++.+++ .++++++.
T Consensus 227 ----------------------------------------------------~~~~~~h~~~v~~~~~~~~g~~l~s~s~ 254 (410)
T 1vyh_C 227 ----------------------------------------------------VKTFTGHREWVRMVRPNQDGTLIASCSN 254 (410)
T ss_dssp ----------------------------------------------------EEEEECCSSCEEEEEECTTSSEEEEEET
T ss_pred ----------------------------------------------------EEEEeCCCccEEEEEECCCCCEEEEEcC
Confidence 124567888999999998 78999999
Q ss_pred CCeEEEEeCCCCceEEeeeC--CceEEEEEecC--------------------CcEEEeecCCCeEEEEeccccchhhhh
Q psy18231 397 DCRIRRYDIRTGNLVTDYVG--EPIVDACFTRD--------------------CQCILTCSTDECLRLFDKATGELLEEY 454 (540)
Q Consensus 397 dg~i~iwd~~~~~~~~~~~~--~~i~~~~~sp~--------------------~~~l~~~~~dg~i~i~d~~~~~~~~~~ 454 (540)
|+.|++||+.+++....+.+ ..|.+++|+|+ +.+|++|+.|+.|++||+++++++..+
T Consensus 255 D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~ 334 (410)
T 1vyh_C 255 DQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTL 334 (410)
T ss_dssp TSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEE
T ss_pred CCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceEEEE
Confidence 99999999999998888765 57999999996 678999999999999999999999999
Q ss_pred ccCcCCcceEEEEecCCCCeEEEeeCCCcEEEEEecCCcceeEEEecccceeeeEEEEcCCCcEEEeec-CCeeEEEEcc
Q psy18231 455 KGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC-GNNVKLWTAE 533 (540)
Q Consensus 455 ~~~~~~v~~~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~-d~~i~iw~~~ 533 (540)
.+|...|..+ +|+|++++|++|+.||+|++||+.+++++..+. +|...|++++|+|++.+|++++ |++|++|++.
T Consensus 335 ~~h~~~v~~v--~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~--~h~~~v~~l~~~~~~~~l~sgs~D~~i~vW~~r 410 (410)
T 1vyh_C 335 VGHDNWVRGV--LFHSGGKFILSCADDKTLRVWDYKNKRCMKTLN--AHEHFVTSLDFHKTAPYVVTGSVDQTVKVWECR 410 (410)
T ss_dssp ECCSSCEEEE--EECSSSSCEEEEETTTEEEEECCTTSCCCEEEE--CCSSCEEEEEECSSSSCEEEEETTSEEEEEC--
T ss_pred ECCCCcEEEE--EEcCCCCEEEEEeCCCeEEEEECCCCceEEEEc--CCCCcEEEEEEcCCCCEEEEEeCCCcEEEEeCC
Confidence 9999998888 899999999999999999999999999999998 8999999999999999999999 9999999863
|
| >2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.6e-48 Score=360.35 Aligned_cols=286 Identities=18% Similarity=0.246 Sum_probs=258.9
Q ss_pred eeeeeecCeEEEEeCCCCCEEEEeeCCCcEEEEcCCCCeeEEEeecCCcceeEEEEeeCCCeEEEeeCCCeEEEEEcCCC
Q psy18231 159 RELFVLSGLMHTRFPVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTG 238 (540)
Q Consensus 159 ~~~~h~~~v~~v~~spdg~~lat~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~ 238 (540)
...+|.+.|.+++|+|++++|++++.||+|++||+.+++.+..+..|...|.+++|+|++++|++|+.|++|++||+.++
T Consensus 8 ~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~~ 87 (304)
T 2ynn_A 8 TFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTG 87 (304)
T ss_dssp EEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTC
T ss_pred eecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEECCCC
Confidence 34579999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeEeccccCCceeEEEECCCCCEEEEecCCCcEEEEEecCCCCCCcchhhhhHhhhhcCCceeEEEEeecccccccccC
Q psy18231 239 QPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHLSNG 318 (540)
Q Consensus 239 ~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (540)
+.+..+.+|.+.|.+++|+|++++|++|+.||+|++||++++..
T Consensus 88 ~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~------------------------------------ 131 (304)
T 2ynn_A 88 EKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWA------------------------------------ 131 (304)
T ss_dssp CEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTE------------------------------------
T ss_pred cEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcc------------------------------------
Confidence 99999999999999999999999999999999999999976531
Q ss_pred ceeeEEEeeeecccccceeeeeeccceeEEEeecccceecccccccccccchhhhhhcccccEEEEEecC---CeeEeee
Q psy18231 319 LLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEARDSITSVHVSD---HEILTAS 395 (540)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~---~~l~~~~ 395 (540)
....+.+|...|.+++|+| ..+++++
T Consensus 132 ---------------------------------------------------~~~~~~~h~~~v~~v~~~p~~~~~l~sgs 160 (304)
T 2ynn_A 132 ---------------------------------------------------LEQTFEGHEHFVMCVAFNPKDPSTFASGC 160 (304)
T ss_dssp ---------------------------------------------------EEEEECCCCSCEEEEEECTTCTTEEEEEE
T ss_pred ---------------------------------------------------hhhhhcccCCcEEEEEECCCCCCEEEEEe
Confidence 0114567899999999997 5799999
Q ss_pred CCCeEEEEeCCCCceEEeeeC---CceEEEEEec--CCcEEEeecCCCeEEEEeccccchhhhhccCcCCcceEEEEecC
Q psy18231 396 LDCRIRRYDIRTGNLVTDYVG---EPIVDACFTR--DCQCILTCSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLDS 470 (540)
Q Consensus 396 ~dg~i~iwd~~~~~~~~~~~~---~~i~~~~~sp--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~s~ 470 (540)
.|++|++||++++.....+.. ..+..+.|+| ++++|++++.|++|++||+++++++.++.+|...+..+ +|+|
T Consensus 161 ~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~~~v~~~--~~~p 238 (304)
T 2ynn_A 161 LDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFA--VFHP 238 (304)
T ss_dssp TTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEE--EECS
T ss_pred CCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCCCCCCEEEE--EECC
Confidence 999999999998876665543 5788999987 77899999999999999999999999999999998887 8999
Q ss_pred CCCeEEEeeCCCcEEEEEecCCcceeEEEecccceeeeEEEEcCCCc--EEEeecCCeeEEEEcccc
Q psy18231 471 KDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRK--HIMSACGNNVKLWTAEED 535 (540)
Q Consensus 471 ~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~--~l~s~~d~~i~iw~~~~~ 535 (540)
++++|++|+.||+|++||+.+++.+..+. .|...+.+++|+|++. ++++|+|+.+.+|++.++
T Consensus 239 ~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~asg~~~g~~~~~~~~~ 303 (304)
T 2ynn_A 239 TLPIIISGSEDGTLKIWNSSTYKVEKTLN--VGLERSWCIATHPTGRKNYIASGFDNGFTVLSLGND 303 (304)
T ss_dssp SSSEEEEEETTSCEEEEETTTCCEEEEEC--CSSSSEEEEEECTTCGGGCEEEEETTEEEEEECC--
T ss_pred CCCEEEEEcCCCeEEEEECCCCceeeecc--CCCccEEEEEECCCCCceEEEEecCCceEEEEeccC
Confidence 99999999999999999999999999998 8889999999999875 577777888999988764
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-48 Score=365.71 Aligned_cols=281 Identities=20% Similarity=0.302 Sum_probs=256.8
Q ss_pred eeeecCeEEEEeCCC----CCEEEEeeCCCcEEEEcCCCCee--EEEeecCCcceeEEEEeeCCCeEEEeeCCCeEEEEE
Q psy18231 161 LFVLSGLMHTRFPVD----GSYCLTCGSDKKIKLWNPYRNLL--LKTYGGHAHEVNDATAACDSSQIASGASDKSVILWE 234 (540)
Q Consensus 161 ~~h~~~v~~v~~spd----g~~lat~~~dg~i~iwd~~~~~~--~~~~~~h~~~v~~l~~sp~~~~l~s~s~dg~i~iwd 234 (540)
.+|.++|.+++|+|+ +++|++|+.|++|+|||+.+++. ...+.+|...|.+++|+|++.++++++.|++|++||
T Consensus 29 ~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~lWd 108 (321)
T 3ow8_A 29 QAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWD 108 (321)
T ss_dssp TSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEE
T ss_pred ccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeCCCcEEEEE
Confidence 479999999999985 67999999999999999877653 456889999999999999999999999999999999
Q ss_pred cCCCceeEeccccCCceeEEEECCCCCEEEEecCCCcEEEEEecCCCCCCcchhhhhHhhhhcCCceeEEEEeecccccc
Q psy18231 235 VTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNH 314 (540)
Q Consensus 235 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (540)
+.+++.+..+..|...+.+++|+|++++|++++.||.|++||+++++.
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~-------------------------------- 156 (321)
T 3ow8_A 109 LENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKK-------------------------------- 156 (321)
T ss_dssp TTTTEEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSE--------------------------------
T ss_pred CCCCCEEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCce--------------------------------
Confidence 999999999999999999999999999999999999999999987652
Q ss_pred cccCceeeEEEeeeecccccceeeeeeccceeEEEeecccceecccccccccccchhhhhhcccccEEEEEecC--CeeE
Q psy18231 315 LSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEARDSITSVHVSD--HEIL 392 (540)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~--~~l~ 392 (540)
...+..|...|.+++|+| ++|+
T Consensus 157 --------------------------------------------------------~~~~~~~~~~v~~~~~spdg~~la 180 (321)
T 3ow8_A 157 --------------------------------------------------------EYSLDTRGKFILSIAYSPDGKYLA 180 (321)
T ss_dssp --------------------------------------------------------EEEEECSSSCEEEEEECTTSSEEE
T ss_pred --------------------------------------------------------eEEecCCCceEEEEEECCCCCEEE
Confidence 013345667899999998 8899
Q ss_pred eeeCCCeEEEEeCCCCceEEeeeC--CceEEEEEecCCcEEEeecCCCeEEEEeccccchhhhhccCcCCcceEEEEecC
Q psy18231 393 TASLDCRIRRYDIRTGNLVTDYVG--EPIVDACFTRDCQCILTCSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLDS 470 (540)
Q Consensus 393 ~~~~dg~i~iwd~~~~~~~~~~~~--~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~s~ 470 (540)
+++.||.|++||+++++.+..+.+ .+|.+++|+|++++|++++.|+.|++||+++++.+..+.+|...|..+ +|+|
T Consensus 181 sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~--~~sp 258 (321)
T 3ow8_A 181 SGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNV--AFCP 258 (321)
T ss_dssp EEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEECCCSSCEEEE--EECT
T ss_pred EEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEcCCCCceEEE--EECC
Confidence 999999999999999999988875 479999999999999999999999999999999999999999998887 8999
Q ss_pred CCCeEEEeeCCCcEEEEEecCCcceeEEEecccceeeeEEEEcCCCcEEEeec-CCeeEEEEcc
Q psy18231 471 KDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC-GNNVKLWTAE 533 (540)
Q Consensus 471 ~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~-d~~i~iw~~~ 533 (540)
++++|++++.|++|++||+.+++++..+. +|...|.+++|+|++++|++++ |++|++||.+
T Consensus 259 ~~~~l~s~s~D~~v~iwd~~~~~~~~~~~--~h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd~p 320 (321)
T 3ow8_A 259 DDTHFVSSSSDKSVKVWDVGTRTCVHTFF--DHQDQVWGVKYNGNGSKIVSVGDDQEIHIYDCP 320 (321)
T ss_dssp TSSEEEEEETTSCEEEEETTTTEEEEEEC--CCSSCEEEEEECTTSSEEEEEETTCCEEEEECC
T ss_pred CCCEEEEEeCCCcEEEEeCCCCEEEEEEc--CCCCcEEEEEECCCCCEEEEEeCCCeEEEEeCC
Confidence 99999999999999999999999999998 8999999999999999999999 9999999974
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-47 Score=390.28 Aligned_cols=381 Identities=15% Similarity=0.189 Sum_probs=282.3
Q ss_pred ceeccccchhhhhhcccccceeeeecccccc---eeeeeecCeEEEEeCCCCCEEEEeeCCCcEEEEcCCCCeeEEEee-
Q psy18231 128 LLFSLPRTITRILYELPKEWSIRVYRPLTVN---RELFVLSGLMHTRFPVDGSYCLTCGSDKKIKLWNPYRNLLLKTYG- 203 (540)
Q Consensus 128 ~~~s~~~~~~~~~~~~~~~~~i~~~~~~~~~---~~~~h~~~v~~v~~spdg~~lat~~~dg~i~iwd~~~~~~~~~~~- 203 (540)
+.|+++ ....+++++.|++|++|+..+.. ...+|.+.|.+++|+|||++||+|+.|++|++||+.+++.+..+.
T Consensus 153 v~f~p~--~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~~~~ 230 (611)
T 1nr0_A 153 VDFKPS--RPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFED 230 (611)
T ss_dssp EEECSS--SSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBC
T ss_pred EEECCC--CCeEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCCCEEEEEECCCcEEEEECCCCcEeeeecc
Confidence 344443 23457788999999999976643 234699999999999999999999999999999999999988884
Q ss_pred ------cCCcceeEEEEeeCCCeEEEeeCCCeEEEEEcCCCceeE-----------------------------------
Q psy18231 204 ------GHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPVR----------------------------------- 242 (540)
Q Consensus 204 ------~h~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~----------------------------------- 242 (540)
+|.+.|++++|+|++++|++++.|++|++||+.+++.+.
T Consensus 231 ~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~ 310 (611)
T 1nr0_A 231 DSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVN 310 (611)
T ss_dssp TTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEE
T ss_pred ccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEe
Confidence 799999999999999999999999999999998876543
Q ss_pred --------eccccCCceeEEEECCCCCEEEEecCCCcEEEEEecCCCCCCcchhhhhHhhhhcCCceeEEEEeecccccc
Q psy18231 243 --------RWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNH 314 (540)
Q Consensus 243 --------~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (540)
.+.+|...|.+++|+|++++|++++.|++|++||+.++...... ...+.. .+..+.+.....
T Consensus 311 ~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~~~-------~~~h~~---~v~~~~~s~~~~ 380 (611)
T 1nr0_A 311 PELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVF-------PDVHAT---MITGIKTTSKGD 380 (611)
T ss_dssp TTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECS-------SCSCSS---CEEEEEECTTSC
T ss_pred CCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeec-------ccCCcc---eEEEEEECCCCc
Confidence 33579999999999999999999999999999999887532111 011222 223333333333
Q ss_pred cccCceeeEEEeeeeccc------------ccceeeeeeccceeEEEeecccceecccccccccccchhhhhhcccccEE
Q psy18231 315 LSNGLLTKLVFAFRCKYL------------NGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEARDSIT 382 (540)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 382 (540)
+........+..|..... ......+.++.++...+........+++. .. +..+ .|...+.
T Consensus 381 l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~------~~-~~~~-~~~~~v~ 452 (611)
T 1nr0_A 381 LFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSH------GK-LTEV-PISYNSS 452 (611)
T ss_dssp EEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEET------TE-EEEE-ECSSCEE
T ss_pred EEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeC------Cc-eeee-ecCCCce
Confidence 333333333333332211 11112222233322222221122222210 01 1112 3677899
Q ss_pred EEEecC--CeeEeeeCCCeEEEEeCCCCceE--Ee-eeCCceEEEEEecCCcEEEeecCCCeEEEEeccc-cchhhh--h
Q psy18231 383 SVHVSD--HEILTASLDCRIRRYDIRTGNLV--TD-YVGEPIVDACFTRDCQCILTCSTDECLRLFDKAT-GELLEE--Y 454 (540)
Q Consensus 383 ~l~~~~--~~l~~~~~dg~i~iwd~~~~~~~--~~-~~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~-~~~~~~--~ 454 (540)
+++|+| +++++|+.|++|++||+.+++.. .. -+...|++++|+|+|++|++++.|++|++||+.+ ++.+.. +
T Consensus 453 ~va~spdg~~lasgs~D~~v~lwd~~~~~~~~~~~~~h~~~v~~v~fspdg~~las~s~d~~v~~w~~~~~~~~~~~~~~ 532 (611)
T 1nr0_A 453 CVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSW 532 (611)
T ss_dssp EEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCC
T ss_pred EEEEeCCCCEEEEeCCCCeEEEEEccCCceeeeeccCCCCceEEEEECCCCCEEEEEcCCCCEEEEEcCCCCceeeeeee
Confidence 999998 89999999999999999876532 22 2346899999999999999999999999999987 665544 3
Q ss_pred ccCcCCcceEEEEecCCCCeEEEeeCCCcEEEEEecCCcce--eEEEeccc-ceeeeEEEEcCCCcEEEeec-CCeeEEE
Q psy18231 455 KGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQI--STLIHSVG-KAVVNSLCSHPTRKHIMSAC-GNNVKLW 530 (540)
Q Consensus 455 ~~~~~~v~~~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~--~~~~~~~~-~~~v~~l~~s~d~~~l~s~~-d~~i~iw 530 (540)
..|...|.++ +|+|||++|++|+.|++|++||+.++... ..+. +| ...|.+++|+|+++ |++++ |++|++|
T Consensus 533 ~~H~~~V~~v--~fspdg~~lasgs~D~~v~lW~~~~~~~~~~~~~~--~h~~~~v~~v~fs~d~~-l~s~~~D~~i~lW 607 (611)
T 1nr0_A 533 TFHTAKVACV--SWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKG--AHAMSSVNSVIWLNETT-IVSAGQDSNIKFW 607 (611)
T ss_dssp CCCSSCEEEE--EECTTSSEEEEEETTSCEEEEETTCTTSCCEEETT--SSTTSCEEEEEEEETTE-EEEEETTSCEEEE
T ss_pred eecccceeEE--EECCCCCEEEEEECCCcEEEEECCCcccccchhhc--cCcccCeeEEEEcCCCE-EEEecCCCCEEEE
Confidence 4599999888 89999999999999999999999887633 3444 78 89999999999999 99999 9999999
Q ss_pred Ecc
Q psy18231 531 TAE 533 (540)
Q Consensus 531 ~~~ 533 (540)
+++
T Consensus 608 ~~~ 610 (611)
T 1nr0_A 608 NVP 610 (611)
T ss_dssp ECC
T ss_pred ecc
Confidence 983
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-47 Score=361.12 Aligned_cols=280 Identities=18% Similarity=0.334 Sum_probs=252.6
Q ss_pred eeeeeecCeEEEEeCCCCCEEEEeeCCCcEEEEcCCCCeeEEEeecCCcceeEEEEeeCCCeEEEeeCCCeEEEEEcCCC
Q psy18231 159 RELFVLSGLMHTRFPVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTG 238 (540)
Q Consensus 159 ~~~~h~~~v~~v~~spdg~~lat~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~ 238 (540)
...+|.+.|.+++|+||+++|++|+.||+|++||..+++.+..+..|...|.+++|+|++++|++++.|+.|++||+.++
T Consensus 50 ~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~ 129 (340)
T 1got_B 50 TLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTR 129 (340)
T ss_dssp EECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEEEETTTC
T ss_pred eecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEECccC
Confidence 34579999999999999999999999999999999999999999999999999999999999999999999999999876
Q ss_pred c----eeEeccccCCceeEEEECCCCCEEEEecCCCcEEEEEecCCCCCCcchhhhhHhhhhcCCceeEEEEeecccccc
Q psy18231 239 Q----PVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNH 314 (540)
Q Consensus 239 ~----~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (540)
+ ....+.+|.+.|.++.|++++. +++++.|++|++||+++++.
T Consensus 130 ~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~s~d~~i~~wd~~~~~~-------------------------------- 176 (340)
T 1got_B 130 EGNVRVSRELAGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETGQQ-------------------------------- 176 (340)
T ss_dssp SBSCEEEEEEECCSSCEEEEEEEETTE-EEEEETTSCEEEEETTTTEE--------------------------------
T ss_pred CCcceeEEEecCCCccEEEEEECCCCc-EEEEECCCcEEEEECCCCcE--------------------------------
Confidence 3 4556789999999999998765 88999999999999987641
Q ss_pred cccCceeeEEEeeeecccccceeeeeeccceeEEEeecccceecccccccccccchhhhhhcccccEEEEEecC--CeeE
Q psy18231 315 LSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEARDSITSVHVSD--HEIL 392 (540)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~--~~l~ 392 (540)
...+.+|...|.+++|+| .+++
T Consensus 177 --------------------------------------------------------~~~~~~h~~~v~~~~~~~~~~~l~ 200 (340)
T 1got_B 177 --------------------------------------------------------TTTFTGHTGDVMSLSLAPDTRLFV 200 (340)
T ss_dssp --------------------------------------------------------EEEECCCSSCEEEEEECTTSSEEE
T ss_pred --------------------------------------------------------EEEEcCCCCceEEEEECCCCCEEE
Confidence 114567889999999998 7899
Q ss_pred eeeCCCeEEEEeCCCCceEEeeeC--CceEEEEEecCCcEEEeecCCCeEEEEeccccchhhhhccCc--CCcceEEEEe
Q psy18231 393 TASLDCRIRRYDIRTGNLVTDYVG--EPIVDACFTRDCQCILTCSTDECLRLFDKATGELLEEYKGHK--SGDFRIECCL 468 (540)
Q Consensus 393 ~~~~dg~i~iwd~~~~~~~~~~~~--~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~--~~v~~~~~~~ 468 (540)
+++.|+.|++||+++++.+..+.+ ..|.+++|+|++++|++++.||.|++||+++++.+..+..+. ..+..+ +|
T Consensus 201 sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~--~~ 278 (340)
T 1got_B 201 SGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSV--SF 278 (340)
T ss_dssp EEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEE--EE
T ss_pred EEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEEE--EE
Confidence 999999999999999999888865 579999999999999999999999999999888776664332 345555 89
Q ss_pred cCCCCeEEEeeCCCcEEEEEecCCcceeEEEecccceeeeEEEEcCCCcEEEeec-CCeeEEEE
Q psy18231 469 DSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC-GNNVKLWT 531 (540)
Q Consensus 469 s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~-d~~i~iw~ 531 (540)
+|+|++|++|+.||.|++||+.+++.+..+. +|...|.+++|+|++++|++++ |++|+|||
T Consensus 279 s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~~--~h~~~v~~~~~s~dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 279 SKSGRLLLAGYDDFNCNVWDALKADRAGVLA--GHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp CTTSSEEEEEETTSEEEEEETTTCCEEEEEE--CCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred CCCCCEEEEECCCCeEEEEEcccCcEeeEee--cCCCcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence 9999999999999999999999999999998 9999999999999999999999 99999996
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-46 Score=385.20 Aligned_cols=341 Identities=15% Similarity=0.201 Sum_probs=259.3
Q ss_pred ceeeeecccccc-eeeeeecCeEEEEeCCCCC-EEEEeeCCCcEEEEcCCCCeeEEEeecCCcceeEEEEeeCCCeEEEe
Q psy18231 147 WSIRVYRPLTVN-RELFVLSGLMHTRFPVDGS-YCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASG 224 (540)
Q Consensus 147 ~~i~~~~~~~~~-~~~~h~~~v~~v~~spdg~-~lat~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~ 224 (540)
..+++|+..... ...+|.+.|.+++|+|++. +|++|+.|++|++||..+++.+..+.+|...|++++|+|++++|+++
T Consensus 129 ~~v~~wd~~~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~ 208 (611)
T 1nr0_A 129 GHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFAST 208 (611)
T ss_dssp EEEEETTTCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEE
T ss_pred eEEEEeeCCCCcceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCCCEEEEE
Confidence 356666543221 2346888899999999886 59999999999999999999999999999999999999999999999
Q ss_pred eCCCeEEEEEcCCCceeEecc-------ccCCceeEEEECCCCCEEEEecCCCcEEEEEecCCCCCCcchhhhhHhhhhc
Q psy18231 225 ASDKSVILWEVTTGQPVRRWR-------EHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQVRCLNEALKEA 297 (540)
Q Consensus 225 s~dg~i~iwd~~~~~~~~~~~-------~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 297 (540)
+.|++|++||+.+++.+..+. +|.+.|.+++|+|++++|++++.|++|++||+++++.....
T Consensus 209 s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~----------- 277 (611)
T 1nr0_A 209 GGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTI----------- 277 (611)
T ss_dssp ETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE-----------
T ss_pred ECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeee-----------
Confidence 999999999999999888874 79999999999999999999999999999999876521100
Q ss_pred CCceeEEEEeecccccccccCceeeEEEeeeecccccceeeeeeccceeEEEeecccceecccccccccccchhhhhhcc
Q psy18231 298 RDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEA 377 (540)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 377 (540)
.... .. . .......+. ....+..+.++.+.+|+..... ....+.+|
T Consensus 278 ----------~~~~--~~-~--~~~~~~~~~------~~~l~s~s~d~~i~~~~~~~~~-------------~~~~~~gh 323 (611)
T 1nr0_A 278 ----------PVGT--RI-E--DQQLGIIWT------KQALVSISANGFINFVNPELGS-------------IDQVRYGH 323 (611)
T ss_dssp ----------ECCS--SG-G--GCEEEEEEC------SSCEEEEETTCCEEEEETTTTE-------------EEEEECCC
T ss_pred ----------cCCC--Cc-c--ceeEEEEEc------CCEEEEEeCCCcEEEEeCCCCC-------------cceEEcCC
Confidence 0000 00 0 000000010 0011222334444444432211 22345678
Q ss_pred cccEEEEEecC--CeeEeeeCCCeEEEEeCCCCceEEee-----------------------------------------
Q psy18231 378 RDSITSVHVSD--HEILTASLDCRIRRYDIRTGNLVTDY----------------------------------------- 414 (540)
Q Consensus 378 ~~~v~~l~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~----------------------------------------- 414 (540)
...|.+++|+| ++|++++.|+.|++||+.+++....+
T Consensus 324 ~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~ 403 (611)
T 1nr0_A 324 NKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSS 403 (611)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTT
T ss_pred CCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeecccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCcccccc
Confidence 88899999988 78888899999999988765432211
Q ss_pred -------------------------------------------eCCceEEEEEecCCcEEEeecCCCeEEEEeccccch-
Q psy18231 415 -------------------------------------------VGEPIVDACFTRDCQCILTCSTDECLRLFDKATGEL- 450 (540)
Q Consensus 415 -------------------------------------------~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~- 450 (540)
....+.+++|+|||++|++|+.|++|++||+.+++.
T Consensus 404 ~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~~~ 483 (611)
T 1nr0_A 404 KAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVS 483 (611)
T ss_dssp SCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEE
T ss_pred ceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeeeecCCCceEEEEeCCCCEEEEeCCCCeEEEEEccCCcee
Confidence 012367899999999999999999999999987643
Q ss_pred -hhhhccCcCCcceEEEEecCCCCeEEEeeCCCcEEEEEecC-CcceeEEEecccceeeeEEEEcCCCcEEEeec-CCee
Q psy18231 451 -LEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVD-SSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC-GNNV 527 (540)
Q Consensus 451 -~~~~~~~~~~v~~~~~~~s~~~~~l~s~s~dg~i~iwd~~~-~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~-d~~i 527 (540)
+.. .+|...|..+ +|+|||++|++++.|++|++||+.+ ++.+.......|...|.+++|+|||++|++++ |++|
T Consensus 484 ~~~~-~~h~~~v~~v--~fspdg~~las~s~d~~v~~w~~~~~~~~~~~~~~~~H~~~V~~v~fspdg~~lasgs~D~~v 560 (611)
T 1nr0_A 484 EVKT-IVHPAEITSV--AFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSV 560 (611)
T ss_dssp EEEE-EECSSCEEEE--EECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCE
T ss_pred eeec-cCCCCceEEE--EECCCCCEEEEEcCCCCEEEEEcCCCCceeeeeeeeecccceeEEEECCCCCEEEEEECCCcE
Confidence 233 6788888888 8999999999999999999999987 55544312225999999999999999999999 9999
Q ss_pred EEEEcccc
Q psy18231 528 KLWTAEED 535 (540)
Q Consensus 528 ~iw~~~~~ 535 (540)
++|+++++
T Consensus 561 ~lW~~~~~ 568 (611)
T 1nr0_A 561 IVWNMNKP 568 (611)
T ss_dssp EEEETTCT
T ss_pred EEEECCCc
Confidence 99999764
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.7e-47 Score=359.81 Aligned_cols=284 Identities=16% Similarity=0.248 Sum_probs=253.1
Q ss_pred ceeeeeecCeEEEEeCCCCCEEEEeeCCCcEEEEcCCCCeeEEEeecCCcceeEEEEeeCCCeEEEeeCCCeEEEEEcCC
Q psy18231 158 NRELFVLSGLMHTRFPVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTT 237 (540)
Q Consensus 158 ~~~~~h~~~v~~v~~spdg~~lat~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~ 237 (540)
....+|.+.|++++|+|++++|++|+.||+|++||..+++....+..|...|.+++|+|++.+|++++.|+.+++|++..
T Consensus 58 ~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~~~~ 137 (354)
T 2pbi_B 58 RTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYPLTF 137 (354)
T ss_dssp EEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEEECCC
T ss_pred EEecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEEEEec
Confidence 34568999999999999999999999999999999999999999999999999999999999999999999999999865
Q ss_pred C------ceeEeccccCCceeEEEECCCCCEEEEecCCCcEEEEEecCCCCCCcchhhhhHhhhhcCCceeEEEEeeccc
Q psy18231 238 G------QPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKST 311 (540)
Q Consensus 238 ~------~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (540)
. .....+.+|...|.+++|+|++..|++++.||+|++||+++++.
T Consensus 138 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~----------------------------- 188 (354)
T 2pbi_B 138 DKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQL----------------------------- 188 (354)
T ss_dssp CTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCE-----------------------------
T ss_pred cccccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeE-----------------------------
Confidence 4 23456678999999999999999999999999999999987751
Q ss_pred ccccccCceeeEEEeeeecccccceeeeeeccceeEEEeecccceecccccccccccchhhhhhcccccEEEEEecC---
Q psy18231 312 KNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEARDSITSVHVSD--- 388 (540)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~--- 388 (540)
+..+.+|...|.+++++|
T Consensus 189 -----------------------------------------------------------~~~~~~h~~~v~~~~~~~~~~ 209 (354)
T 2pbi_B 189 -----------------------------------------------------------LQSFHGHGADVLCLDLAPSET 209 (354)
T ss_dssp -----------------------------------------------------------EEEEECCSSCEEEEEECCCSS
T ss_pred -----------------------------------------------------------EEEEcCCCCCeEEEEEEeCCC
Confidence 124567888999999876
Q ss_pred -CeeEeeeCCCeEEEEeCCCCceEEeeeC--CceEEEEEecCCcEEEeecCCCeEEEEeccccchhhhhccCcCCcceEE
Q psy18231 389 -HEILTASLDCRIRRYDIRTGNLVTDYVG--EPIVDACFTRDCQCILTCSTDECLRLFDKATGELLEEYKGHKSGDFRIE 465 (540)
Q Consensus 389 -~~l~~~~~dg~i~iwd~~~~~~~~~~~~--~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~ 465 (540)
+.+++++.||.|++||+++++++..+.+ ..|.+++|+|++++|++++.|++|++||+++++.+..+..+........
T Consensus 210 g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~ 289 (354)
T 2pbi_B 210 GNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASS 289 (354)
T ss_dssp CCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEE
T ss_pred CCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccceeE
Confidence 5899999999999999999999888865 5799999999999999999999999999998877666654433222233
Q ss_pred EEecCCCCeEEEeeCCCcEEEEEecCCcceeEEEecccceeeeEEEEcCCCcEEEeec-CCeeEEEE
Q psy18231 466 CCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC-GNNVKLWT 531 (540)
Q Consensus 466 ~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~-d~~i~iw~ 531 (540)
++|+|++++|++|+.|++|++||+.+++.+..+. +|...|++++|+|||++|++++ |++|++|+
T Consensus 290 ~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~--~h~~~v~~l~~spdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 290 VDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILF--GHENRVSTLRVSPDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp EEECTTSSEEEEEETTSCEEEEETTTCSEEEEEC--CCSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred EEEeCCCCEEEEEECCCcEEEEECCCCceEEEEE--CCCCcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence 4899999999999999999999999999998888 8999999999999999999999 99999996
|
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-47 Score=362.13 Aligned_cols=292 Identities=16% Similarity=0.156 Sum_probs=236.9
Q ss_pred eeecccccceeeeeecCeEEEEeCCCCCEEEEeeCCCcEEEEcCCC-----------CeeEEEeecCCcceeEEEEeeCC
Q psy18231 150 RVYRPLTVNRELFVLSGLMHTRFPVDGSYCLTCGSDKKIKLWNPYR-----------NLLLKTYGGHAHEVNDATAACDS 218 (540)
Q Consensus 150 ~~~~~~~~~~~~~h~~~v~~v~~spdg~~lat~~~dg~i~iwd~~~-----------~~~~~~~~~h~~~v~~l~~sp~~ 218 (540)
|.|+... .....|.+.|.+++|+|||++|++++ |+++++||... .........|...|.+++|+|++
T Consensus 17 r~w~~~~-~~~~~~~~~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~ 94 (344)
T 4gqb_B 17 REWNLPP-NAPACMERQLEAARYRSDGALLLGAS-SLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGER 94 (344)
T ss_dssp ------C-CSCSSCCSEEEEEEECTTSCEEEEEE-CCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEETTT
T ss_pred cccCCCC-CCcccccCCEEEEEECCCCCEEEEEe-CCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeCCC
Confidence 4454333 22335677899999999999999887 77888887321 11111223367789999999985
Q ss_pred CeEEEeeCCCeEEEEEcCCCceeEe----ccccCCceeEEEECCCCCEEEEecCCCcEEEEEecCCCCCCcchhhhhHhh
Q psy18231 219 SQIASGASDKSVILWEVTTGQPVRR----WREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQVRCLNEAL 294 (540)
Q Consensus 219 ~~l~s~s~dg~i~iwd~~~~~~~~~----~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 294 (540)
.|++|+.||+|+|||+++++.+.. +.+|.+.|++++|+|++++|++|+.||+|++||+++++.
T Consensus 95 -~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~------------ 161 (344)
T 4gqb_B 95 -GILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVV------------ 161 (344)
T ss_dssp -EEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEE------------
T ss_pred -eEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcE------------
Confidence 688999999999999999876544 348999999999999999999999999999999987651
Q ss_pred hhcCCceeEEEEeecccccccccCceeeEEEeeeecccccceeeeeeccceeEEEeecccceecccccccccccchhhhh
Q psy18231 295 KEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQAL 374 (540)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (540)
+..+
T Consensus 162 ----------------------------------------------------------------------------~~~~ 165 (344)
T 4gqb_B 162 ----------------------------------------------------------------------------LSSY 165 (344)
T ss_dssp ----------------------------------------------------------------------------EEEE
T ss_pred ----------------------------------------------------------------------------EEEE
Confidence 2256
Q ss_pred hcccccEEEEEecC---CeeEeeeCCCeEEEEeCCCCceEEeee----CCceEEEEEec-CCcEEEeecCCCeEEEEecc
Q psy18231 375 KEARDSITSVHVSD---HEILTASLDCRIRRYDIRTGNLVTDYV----GEPIVDACFTR-DCQCILTCSTDECLRLFDKA 446 (540)
Q Consensus 375 ~~~~~~v~~l~~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~----~~~i~~~~~sp-~~~~l~~~~~dg~i~i~d~~ 446 (540)
.+|...|.+++|++ .++++++.|++|++||+++++....+. +..+.+++|+| ++++|++|+.||.|++||++
T Consensus 166 ~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~ 245 (344)
T 4gqb_B 166 RAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTK 245 (344)
T ss_dssp CCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESC
T ss_pred cCcCCceEEEEecCCCCCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECC
Confidence 78999999999988 468999999999999999999887764 35799999999 56788999999999999999
Q ss_pred ccchhhhhccCcCCcceEEEEecCCC-CeEEEeeCCCcEEEEEecCCcceeEEEecccceeeeEEEEcCCCc-EEEeec-
Q psy18231 447 TGELLEEYKGHKSGDFRIECCLDSKD-SQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRK-HIMSAC- 523 (540)
Q Consensus 447 ~~~~~~~~~~~~~~v~~~~~~~s~~~-~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~-~l~s~~- 523 (540)
+++++.++.+|...|+++ +|+|++ ++|++|+.|++|+|||+.+++.+ .+. +|.+.|++++|+|+++ +|++++
T Consensus 246 ~~~~~~~~~~h~~~v~~v--~fsp~g~~~lasgs~D~~i~vwd~~~~~~~-~~~--~H~~~V~~v~~sp~~~~llas~s~ 320 (344)
T 4gqb_B 246 STSCVLSSAVHSQCVTGL--VFSPHSVPFLASLSEDCSLAVLDSSLSELF-RSQ--AHRDFVRDATWSPLNHSLLTTVGW 320 (344)
T ss_dssp C--CCEEEECCSSCEEEE--EECSSSSCCEEEEETTSCEEEECTTCCEEE-EEC--CCSSCEEEEEECSSSTTEEEEEET
T ss_pred CCcEEEEEcCCCCCEEEE--EEccCCCeEEEEEeCCCeEEEEECCCCcEE-EEc--CCCCCEEEEEEeCCCCeEEEEEcC
Confidence 999999999999999888 899998 57999999999999999888754 344 8999999999999986 567888
Q ss_pred CCeeEEEEcccccC
Q psy18231 524 GNNVKLWTAEEDYG 537 (540)
Q Consensus 524 d~~i~iw~~~~~~~ 537 (540)
|++|++|+++++..
T Consensus 321 D~~v~~w~v~~~~~ 334 (344)
T 4gqb_B 321 DHQVVHHVVPTEPL 334 (344)
T ss_dssp TSCEEEEECCC---
T ss_pred CCeEEEEECCCCCC
Confidence 99999999987643
|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-47 Score=365.26 Aligned_cols=299 Identities=13% Similarity=0.121 Sum_probs=235.1
Q ss_pred cccceeeeecccccceeeeeecCeEEEEeCCCCCEEEEeeC------CCcEEEEcCCCCeeE----EEeecCCcceeEEE
Q psy18231 144 PKEWSIRVYRPLTVNRELFVLSGLMHTRFPVDGSYCLTCGS------DKKIKLWNPYRNLLL----KTYGGHAHEVNDAT 213 (540)
Q Consensus 144 ~~~~~i~~~~~~~~~~~~~h~~~v~~v~~spdg~~lat~~~------dg~i~iwd~~~~~~~----~~~~~h~~~v~~l~ 213 (540)
..+.....|+... .....|.+.|++++|||||++||+|+. |+.|++|+..++... ....+|...|++++
T Consensus 23 ~g~~~~~~w~~p~-~~p~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~ 101 (357)
T 4g56_B 23 NGSSKGSAWGRPV-TAPACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVA 101 (357)
T ss_dssp ------------------CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEE
T ss_pred CCCccccccCCCC-CCcccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEE
Confidence 3445566776543 334579999999999999999999997 788999998776532 33456899999999
Q ss_pred EeeCCCeEEEeeCCCeEEEEEcCCCceeEe----ccccCCceeEEEECCCCCEEEEecCCCcEEEEEecCCCCCCcchhh
Q psy18231 214 AACDSSQIASGASDKSVILWEVTTGQPVRR----WREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQVRC 289 (540)
Q Consensus 214 ~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~----~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 289 (540)
|+|++. +++++.||+|+|||+.+++.... ..+|.+.|.+++|+|++++|++++.||+|++||+++++.
T Consensus 102 ~s~d~~-~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~------- 173 (357)
T 4g56_B 102 WVSEKG-ILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAV------- 173 (357)
T ss_dssp EETTTE-EEEEETTSCEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEE-------
T ss_pred EcCCCC-EEEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcE-------
Confidence 999875 56678899999999998865432 347999999999999999999999999999999987651
Q ss_pred hhHhhhhcCCceeEEEEeecccccccccCceeeEEEeeeecccccceeeeeeccceeEEEeecccceecccccccccccc
Q psy18231 290 LNEALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNS 369 (540)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (540)
T Consensus 174 -------------------------------------------------------------------------------- 173 (357)
T 4g56_B 174 -------------------------------------------------------------------------------- 173 (357)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhhhhcccccEEEEEecC---CeeEeeeCCCeEEEEeCCCCceEEeeeC----CceEEEEEecC-CcEEEeecCCCeEE
Q psy18231 370 CFQALKEARDSITSVHVSD---HEILTASLDCRIRRYDIRTGNLVTDYVG----EPIVDACFTRD-CQCILTCSTDECLR 441 (540)
Q Consensus 370 ~~~~~~~~~~~v~~l~~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~~----~~i~~~~~sp~-~~~l~~~~~dg~i~ 441 (540)
+..+..|...|.+++|++ ..+++++.||.|++||+++++....+.. ..+.+++|+|+ +.+|++|+.|+.|+
T Consensus 174 -~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~ 252 (357)
T 4g56_B 174 -LKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVS 252 (357)
T ss_dssp -EEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEE
T ss_pred -EEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeeccccee
Confidence 124567899999999987 4789999999999999999887765542 46999999997 56889999999999
Q ss_pred EEeccccchhhhhccCcCCcceEEEEecCCC-CeEEEeeCCCcEEEEEecCCcceeEEEecccceeeeEEEEcC-CCcEE
Q psy18231 442 LFDKATGELLEEYKGHKSGDFRIECCLDSKD-SQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHP-TRKHI 519 (540)
Q Consensus 442 i~d~~~~~~~~~~~~~~~~v~~~~~~~s~~~-~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~-d~~~l 519 (540)
+||+++++.+..+.+|...|..+ +|+|++ ++|++|+.|++|+|||+++++.+..+ +|.+.|++++|+| |+++|
T Consensus 253 ~wd~~~~~~~~~~~~~~~~v~~l--~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~---~H~~~V~~vafsP~d~~~l 327 (357)
T 4g56_B 253 LVNIKNPDSAQTSAVHSQNITGL--AYSYHSSPFLASISEDCTVAVLDADFSEVFRDL---SHRDFVTGVAWSPLDHSKF 327 (357)
T ss_dssp EEESSCGGGCEEECCCSSCEEEE--EECSSSSCCEEEEETTSCEEEECTTSCEEEEEC---CCSSCEEEEEECSSSTTEE
T ss_pred EEECCCCcEeEEEeccceeEEEE--EEcCCCCCEEEEEeCCCEEEEEECCCCcEeEEC---CCCCCEEEEEEeCCCCCEE
Confidence 99999999999999999999888 899987 57999999999999999998877654 7999999999998 79999
Q ss_pred Eeec-CCeeEEEEcccccC
Q psy18231 520 MSAC-GNNVKLWTAEEDYG 537 (540)
Q Consensus 520 ~s~~-d~~i~iw~~~~~~~ 537 (540)
++++ |++|++|+++....
T Consensus 328 ~s~s~Dg~v~iW~~~~~~~ 346 (357)
T 4g56_B 328 TTVGWDHKVLHHHLPSEGR 346 (357)
T ss_dssp EEEETTSCEEEEECC----
T ss_pred EEEcCCCeEEEEECCCCCc
Confidence 9999 99999999976543
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-46 Score=349.42 Aligned_cols=284 Identities=29% Similarity=0.530 Sum_probs=258.8
Q ss_pred eeeeecCeEEEEeCCCCCEEEEeeCCCcEEEEcCCCCeeEEEeecCCcceeEEEEeeCCCeEEEeeCCCeEEEEEcCCCc
Q psy18231 160 ELFVLSGLMHTRFPVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQ 239 (540)
Q Consensus 160 ~~~h~~~v~~v~~spdg~~lat~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~ 239 (540)
..+|.+.|++++|+|++++|++|+.||.|++|+..+++....+.+|...|.+++|+|++++|++++.|+.|++||+++++
T Consensus 19 ~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~ 98 (312)
T 4ery_A 19 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGK 98 (312)
T ss_dssp ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCC
T ss_pred EcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcCCCCEEEEECCCCEEEEEECCCCc
Confidence 45799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeEeccccCCceeEEEECCCCCEEEEecCCCcEEEEEecCCCCCCcchhhhhHhhhhcCCceeEEEEeecccccccccCc
Q psy18231 240 PVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHLSNGL 319 (540)
Q Consensus 240 ~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (540)
.+..+.+|...|.+++|+|++++|++++.||.|++||+++++.
T Consensus 99 ~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~------------------------------------- 141 (312)
T 4ery_A 99 CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKC------------------------------------- 141 (312)
T ss_dssp EEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCE-------------------------------------
T ss_pred EEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEE-------------------------------------
Confidence 9999999999999999999999999999999999999987651
Q ss_pred eeeEEEeeeecccccceeeeeeccceeEEEeecccceecccccccccccchhhhhhcccccEEEEEecC--CeeEeeeCC
Q psy18231 320 LTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEARDSITSVHVSD--HEILTASLD 397 (540)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~--~~l~~~~~d 397 (540)
...+..|...|.+++|+| .++++++.|
T Consensus 142 ---------------------------------------------------~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 170 (312)
T 4ery_A 142 ---------------------------------------------------LKTLPAHSDPVSAVHFNRDGSLIVSSSYD 170 (312)
T ss_dssp ---------------------------------------------------EEEECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred ---------------------------------------------------EEEecCCCCcEEEEEEcCCCCEEEEEeCC
Confidence 114456788999999998 789999999
Q ss_pred CeEEEEeCCCCceEEeeeC---CceEEEEEecCCcEEEeecCCCeEEEEeccccchhhhhccCcCCcceEEEEec-CCCC
Q psy18231 398 CRIRRYDIRTGNLVTDYVG---EPIVDACFTRDCQCILTCSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLD-SKDS 473 (540)
Q Consensus 398 g~i~iwd~~~~~~~~~~~~---~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~s-~~~~ 473 (540)
|.|++||+++++.+..+.. ..+..++|+|++++|++++.|+.|++||+++++.+..+.+|......+...++ +++.
T Consensus 171 ~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (312)
T 4ery_A 171 GLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGK 250 (312)
T ss_dssp SCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECSSCCSSSCCCEEEECSSSC
T ss_pred CcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEEecCCceEEEEEEEEeCCCc
Confidence 9999999999988777643 57999999999999999999999999999999999999988876655443444 6788
Q ss_pred eEEEeeCCCcEEEEEecCCcceeEEEecccceeeeEEEEcCCCcEEEeec---CCeeEEEEcc
Q psy18231 474 QIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC---GNNVKLWTAE 533 (540)
Q Consensus 474 ~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~---d~~i~iw~~~ 533 (540)
+|++|+.||.|++||+.+++.+..+. +|...|.+++|+|++++|++++ |++|++|+.+
T Consensus 251 ~l~sg~~dg~i~vwd~~~~~~~~~~~--~h~~~v~~~~~~p~~~~l~s~~~~~d~~i~~W~~d 311 (312)
T 4ery_A 251 WIVSGSEDNLVYIWNLQTKEIVQKLQ--GHTDVVISTACHPTENIIASAALENDKTIKLWKSD 311 (312)
T ss_dssp EEEECCTTSCEEEEETTTCCEEEEEC--CCSSCEEEEEECSSSSEEEEEECTTTCCEEEEECC
T ss_pred EEEEECCCCEEEEEECCCchhhhhhh--ccCCcEEEEeecCcCCceEEEEccCCccEEEecCC
Confidence 99999999999999999999999998 8999999999999999999874 8999999975
|
| >3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.3e-47 Score=364.02 Aligned_cols=292 Identities=20% Similarity=0.310 Sum_probs=252.2
Q ss_pred eeeeeecCeEEEEeCCCCCEEEEeeCCCcEEEEcCCCCeeEEEeecCCcceeEEEEeeCCCeEEEeeCCCeEEEEEcCCC
Q psy18231 159 RELFVLSGLMHTRFPVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTG 238 (540)
Q Consensus 159 ~~~~h~~~v~~v~~spdg~~lat~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~ 238 (540)
...+|.+.|++++|+|++++|++|+.||+|+|||+.+++....+..|...|.+++|+|++++|++|+.|+.|++||+.+.
T Consensus 61 ~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~iw~~~~~ 140 (380)
T 3iz6_a 61 TLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSIFNLSSQ 140 (380)
T ss_dssp EECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTSSEEEECCSSSCCEEEECCCC
T ss_pred cccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECCCCCEEEEeeCCCcEEEEECCCC
Confidence 34579999999999999999999999999999999999999999999999999999999999999999999999999753
Q ss_pred c-------eeEeccccCCceeEEEECCC-CCEEEEecCCCcEEEEEecCCCCCCcchhhhhHhhhhcCCceeEEEEeecc
Q psy18231 239 Q-------PVRRWREHASKVTCVKFNED-SSVVISGSQDNTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKS 310 (540)
Q Consensus 239 ~-------~~~~~~~h~~~v~~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (540)
. ....+.+|.+.|.++.|+|+ +..|++|+.|++|++||+++++.....
T Consensus 141 ~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~------------------------ 196 (380)
T 3iz6_a 141 ADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIF------------------------ 196 (380)
T ss_dssp SSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEE------------------------
T ss_pred ccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEe------------------------
Confidence 2 34567899999999999996 467999999999999999887620000
Q ss_pred cccccccCceeeEEEeeeecccccceeeeeeccceeEEEeecccceecccccccccccchhhhhhcccccEEEEEecC--
Q psy18231 311 TKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEARDSITSVHVSD-- 388 (540)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~-- 388 (540)
......+|...|.++++++
T Consensus 197 -----------------------------------------------------------~~~~~~~h~~~v~~~~~~~~~ 217 (380)
T 3iz6_a 197 -----------------------------------------------------------GSEFPSGHTADVLSLSINSLN 217 (380)
T ss_dssp -----------------------------------------------------------CCCSSSSCCSCEEEEEECSSS
T ss_pred -----------------------------------------------------------ecccCCCCccCeEEEEeecCC
Confidence 0002246888999999975
Q ss_pred -CeeEeeeCCCeEEEEeCC-CCceEEeeeC--CceEEEEEecCCcEEEeecCCCeEEEEeccccchhhhhccCcC-----
Q psy18231 389 -HEILTASLDCRIRRYDIR-TGNLVTDYVG--EPIVDACFTRDCQCILTCSTDECLRLFDKATGELLEEYKGHKS----- 459 (540)
Q Consensus 389 -~~l~~~~~dg~i~iwd~~-~~~~~~~~~~--~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~----- 459 (540)
+++++|+.|+.|++||++ .++.+..+.+ ..|.+++|+|++++|++++.|++|++||+++++.+..+..+..
T Consensus 218 ~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~ 297 (380)
T 3iz6_a 218 ANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNE 297 (380)
T ss_dssp CCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCS
T ss_pred CCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEecccccccccc
Confidence 789999999999999998 4466666665 5799999999999999999999999999999988777655432
Q ss_pred --CcceEEEEecCCCCeEEEeeCCCcEEEEEecCCcceeEEEe--cccceeeeEEEEcCCCcEEEeec-CCeeEEEEccc
Q psy18231 460 --GDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIH--SVGKAVVNSLCSHPTRKHIMSAC-GNNVKLWTAEE 534 (540)
Q Consensus 460 --~v~~~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~--~~~~~~v~~l~~s~d~~~l~s~~-d~~i~iw~~~~ 534 (540)
.+..+ +|+|+|++|++|+.||.|++||+.+++.+..+.. .+|.+.|++++|+|||++|++|+ |++|++|++..
T Consensus 298 ~~~v~~~--~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW~~~~ 375 (380)
T 3iz6_a 298 LPIVTSV--AFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWAFSG 375 (380)
T ss_dssp SCSCSEE--EECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSSSEEEEECTTSCEEEEECCS
T ss_pred cCceEEE--EECCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEEEEECCCCCEEEEeeCCCCEEEEecCC
Confidence 35666 8999999999999999999999999988877731 27999999999999999999999 99999999976
Q ss_pred c
Q psy18231 535 D 535 (540)
Q Consensus 535 ~ 535 (540)
.
T Consensus 376 ~ 376 (380)
T 3iz6_a 376 H 376 (380)
T ss_dssp S
T ss_pred C
Confidence 5
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.9e-46 Score=347.81 Aligned_cols=283 Identities=20% Similarity=0.337 Sum_probs=248.7
Q ss_pred eeeeecCeEEEEeCCCC-CEEEEeeCCCcEEEEcCCC-----CeeEEEeecCCcceeEEEEeeCCCeEEEeeCCCeEEEE
Q psy18231 160 ELFVLSGLMHTRFPVDG-SYCLTCGSDKKIKLWNPYR-----NLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILW 233 (540)
Q Consensus 160 ~~~h~~~v~~v~~spdg-~~lat~~~dg~i~iwd~~~-----~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~dg~i~iw 233 (540)
..+|.+.|++++|+|++ ++|++|+.|++|++|++.. +.++..+.+|...|.+++|+|++++|++++.|++|++|
T Consensus 13 l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v~~w 92 (319)
T 3frx_A 13 LEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLW 92 (319)
T ss_dssp ECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred EccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeCCCEEEEE
Confidence 45799999999999965 8999999999999999753 34677899999999999999999999999999999999
Q ss_pred EcCCCceeEeccccCCceeEEEECCCCCEEEEecCCCcEEEEEecCCCCCCcchhhhhHhhhhcCCceeEEEEeeccccc
Q psy18231 234 EVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKN 313 (540)
Q Consensus 234 d~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (540)
|+.+++.+..+.+|...|.+++|+|++.+|++++.|++|++||++...
T Consensus 93 d~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~~~-------------------------------- 140 (319)
T 3frx_A 93 DVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQC-------------------------------- 140 (319)
T ss_dssp ETTTTEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETTSCE--------------------------------
T ss_pred ECCCCCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCe--------------------------------
Confidence 999999999999999999999999999999999999999999986421
Q ss_pred ccccCceeeEEEeeeecccccceeeeeeccceeEEEeecccceecccccccccccchhhhhhcccccEEEEEecCC----
Q psy18231 314 HLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEARDSITSVHVSDH---- 389 (540)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~---- 389 (540)
+..+.+|...|.++.+.|.
T Consensus 141 ---------------------------------------------------------~~~~~~h~~~v~~~~~~~~~~~~ 163 (319)
T 3frx_A 141 ---------------------------------------------------------LATLLGHNDWVSQVRVVPNEKAD 163 (319)
T ss_dssp ---------------------------------------------------------EEEECCCSSCEEEEEECCC----
T ss_pred ---------------------------------------------------------EEEEeccCCcEEEEEEccCCCCC
Confidence 1144578888999999872
Q ss_pred ----eeEeeeCCCeEEEEeCCCCceEEeeeC--CceEEEEEecCCcEEEeecCCCeEEEEeccccchhhhhccCcCCcce
Q psy18231 390 ----EILTASLDCRIRRYDIRTGNLVTDYVG--EPIVDACFTRDCQCILTCSTDECLRLFDKATGELLEEYKGHKSGDFR 463 (540)
Q Consensus 390 ----~l~~~~~dg~i~iwd~~~~~~~~~~~~--~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~ 463 (540)
.+++++.|+.|++||+++.+....+.+ ..|.+++|+|++++|++++.||.|++||+.+++.+..+..+ ..+..
T Consensus 164 ~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~v~~ 242 (319)
T 3frx_A 164 DDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQ-DEVFS 242 (319)
T ss_dssp --CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECC-SCEEE
T ss_pred CCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCC-CcEEE
Confidence 799999999999999999988887765 58999999999999999999999999999999988888765 45666
Q ss_pred EEEEecCCCCeEEEeeCCCcEEEEEecCCcceeEEEe------cccceeeeEEEEcCCCcEEEeec-CCeeEEEEcccc
Q psy18231 464 IECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIH------SVGKAVVNSLCSHPTRKHIMSAC-GNNVKLWTAEED 535 (540)
Q Consensus 464 ~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~------~~~~~~v~~l~~s~d~~~l~s~~-d~~i~iw~~~~~ 535 (540)
+ +|+|++.+|++++.+ .+++|++.....+..+.. ..|...+.+++|+|||++|++++ |+.|++|++.++
T Consensus 243 ~--~~sp~~~~la~~~~~-~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd~~t~ 318 (319)
T 3frx_A 243 L--AFSPNRYWLAAATAT-GIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMTA 318 (319)
T ss_dssp E--EECSSSSEEEEEETT-EEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEEETTSCEEEEEEEEC
T ss_pred E--EEcCCCCEEEEEcCC-CcEEEEeCcCeeeeccCccccccccCcCcceeEEEECCCCCEEEEeecCceEEEEEEeec
Confidence 6 899999999988765 599999988777666642 13566799999999999999999 999999999763
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-44 Score=344.05 Aligned_cols=287 Identities=17% Similarity=0.248 Sum_probs=239.2
Q ss_pred eeeeeecCeEEEEe-----CC-CCCEEEEeeCCCcEEEEcCCC-------CeeEEEeecCCcceeEEEEeeCCCeEEEee
Q psy18231 159 RELFVLSGLMHTRF-----PV-DGSYCLTCGSDKKIKLWNPYR-------NLLLKTYGGHAHEVNDATAACDSSQIASGA 225 (540)
Q Consensus 159 ~~~~h~~~v~~v~~-----sp-dg~~lat~~~dg~i~iwd~~~-------~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s 225 (540)
...+|.+.|++++| ++ |+++|++|+.|++|++||+.+ +.+...+.+|...|.+++|+|++.+|++++
T Consensus 16 ~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~s 95 (343)
T 2xzm_R 16 ILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSS 95 (343)
T ss_dssp EEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEEEEEE
T ss_pred eeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCEEEEEc
Confidence 34579999999999 77 999999999999999999864 356778899999999999999999999999
Q ss_pred CCCeEEEEEcCCCceeEeccccCCceeEEEECCCCCEEEEecCCCcEEEEEecCCCCCCcchhhhhHhhhhcCCceeEEE
Q psy18231 226 SDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVH 305 (540)
Q Consensus 226 ~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (540)
.|++|++||+++++.+..+.+|...|.+++|+|++++|++++.|++|++||+.......
T Consensus 96 ~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~~~~--------------------- 154 (343)
T 2xzm_R 96 WDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECKFS--------------------- 154 (343)
T ss_dssp TTSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSCEEEE---------------------
T ss_pred CCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCCceee---------------------
Confidence 99999999999999999999999999999999999999999999999999986322000
Q ss_pred EeecccccccccCceeeEEEeeeecccccceeeeeeccceeEEEeecccceecccccccccccchhhhhhcccccEEEEE
Q psy18231 306 SLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEARDSITSVH 385 (540)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~ 385 (540)
......|...|.+++
T Consensus 155 -----------------------------------------------------------------~~~~~~~~~~v~~~~ 169 (343)
T 2xzm_R 155 -----------------------------------------------------------------SAEKENHSDWVSCVR 169 (343)
T ss_dssp -----------------------------------------------------------------CCTTTSCSSCEEEEE
T ss_pred -----------------------------------------------------------------eecccCCCceeeeee
Confidence 002335777888888
Q ss_pred ecC------------CeeEeeeCCCeEEEEeCCCCceEEeeeC--CceEEEEEecCCcEEEeecCCCeEEEEecccc-ch
Q psy18231 386 VSD------------HEILTASLDCRIRRYDIRTGNLVTDYVG--EPIVDACFTRDCQCILTCSTDECLRLFDKATG-EL 450 (540)
Q Consensus 386 ~~~------------~~l~~~~~dg~i~iwd~~~~~~~~~~~~--~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~-~~ 450 (540)
|+| .++++++.|+.|++||. ..+....+.+ ..|.+++|+|+|++|++|+.||.|++||+... ..
T Consensus 170 ~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~-~~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~~~ 248 (343)
T 2xzm_R 170 YSPIMKSANKVQPFAPYFASVGWDGRLKVWNT-NFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYP 248 (343)
T ss_dssp ECCCCCSCSCCCSSCCEEEEEETTSEEEEEET-TTEEEEEEECCSSCEEEEEECTTSSEEEEEETTCEEEEEESSCCSSC
T ss_pred eccccccccccCCCCCEEEEEcCCCEEEEEcC-CCceeEEEcCccccceEEEECCCCCEEEEEcCCCeEEEEECCCCccc
Confidence 887 36999999999999994 4555556654 57999999999999999999999999999544 33
Q ss_pred hhhhccCcCCcceEEEEecCCCCeEEEeeCCCcEEEEEecCCcceeEEEe-----------cccceeeeEEEEcCCCcEE
Q psy18231 451 LEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIH-----------SVGKAVVNSLCSHPTRKHI 519 (540)
Q Consensus 451 ~~~~~~~~~~v~~~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~-----------~~~~~~v~~l~~s~d~~~l 519 (540)
...+ .+...+..+ +|+|++.+++++ .|+.|++||+.+++....... .+|...|.+++|+|+|++|
T Consensus 249 ~~~~-~~~~~v~~v--~~sp~~~~la~~-~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l 324 (343)
T 2xzm_R 249 QREF-DAGSTINQI--AFNPKLQWVAVG-TDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNALGKKL 324 (343)
T ss_dssp SEEE-ECSSCEEEE--EECSSSCEEEEE-ESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEECSSSCCE
T ss_pred ceee-cCCCcEEEE--EECCCCCEEEEE-CCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCceEEEEECCCCCeE
Confidence 3333 344556666 899999887655 578899999988776552221 1577889999999999999
Q ss_pred Eeec-CCeeEEEEccccc
Q psy18231 520 MSAC-GNNVKLWTAEEDY 536 (540)
Q Consensus 520 ~s~~-d~~i~iw~~~~~~ 536 (540)
++|+ ||+|++|+++++.
T Consensus 325 ~sg~~Dg~v~~w~~~~g~ 342 (343)
T 2xzm_R 325 FAGFTDGVIRTFSFETSA 342 (343)
T ss_dssp EEEETTSEEEEEEEEEEE
T ss_pred EEecCCceEEEEEEEccC
Confidence 9999 9999999998764
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-45 Score=346.93 Aligned_cols=291 Identities=18% Similarity=0.313 Sum_probs=240.6
Q ss_pred eeeeec-CeEEEEeCCCCCEEEEeeCCCcEEEEcCCCCeeEE---EeecCCcceeEEEEeeCCCeEEEeeCCCeEEEEEc
Q psy18231 160 ELFVLS-GLMHTRFPVDGSYCLTCGSDKKIKLWNPYRNLLLK---TYGGHAHEVNDATAACDSSQIASGASDKSVILWEV 235 (540)
Q Consensus 160 ~~~h~~-~v~~v~~spdg~~lat~~~dg~i~iwd~~~~~~~~---~~~~h~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~ 235 (540)
..+|.+ .|.+++|+|+|++||+|+.|++|+|||+.++.... ...+|...|.+++|+|++++|++++.|++|++||+
T Consensus 11 ~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~ 90 (345)
T 3fm0_A 11 VPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWKK 90 (345)
T ss_dssp ECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSCEEEEEE
T ss_pred ecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCCcEEEEEc
Confidence 346777 89999999999999999999999999998876432 23689999999999999999999999999999999
Q ss_pred CCCc--eeEeccccCCceeEEEECCCCCEEEEecCCCcEEEEEecCCCCCCcchhhhhHhhhhcCCceeEEEEeeccccc
Q psy18231 236 TTGQ--PVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKN 313 (540)
Q Consensus 236 ~~~~--~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (540)
..+. .+..+.+|...|.+++|+|++++|++++.|++|++||+++.....
T Consensus 91 ~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~----------------------------- 141 (345)
T 3fm0_A 91 NQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYE----------------------------- 141 (345)
T ss_dssp CCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEE-----------------------------
T ss_pred cCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeE-----------------------------
Confidence 8764 567888999999999999999999999999999999998654100
Q ss_pred ccccCceeeEEEeeeecccccceeeeeeccceeEEEeecccceecccccccccccchhhhhhcccccEEEEEecC--Cee
Q psy18231 314 HLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEARDSITSVHVSD--HEI 391 (540)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~--~~l 391 (540)
+...+..|...|.+++|+| .+|
T Consensus 142 --------------------------------------------------------~~~~~~~h~~~v~~~~~~p~~~~l 165 (345)
T 3fm0_A 142 --------------------------------------------------------CVSVLNSHTQDVKHVVWHPSQELL 165 (345)
T ss_dssp --------------------------------------------------------EEEEECCCCSCEEEEEECSSSSCE
T ss_pred --------------------------------------------------------EEEEecCcCCCeEEEEECCCCCEE
Confidence 1114567889999999998 789
Q ss_pred EeeeCCCeEEEEeCCCCce--EEeeeC--CceEEEEEecCCcEEEeecCCCeEEEEeccccc---------------hhh
Q psy18231 392 LTASLDCRIRRYDIRTGNL--VTDYVG--EPIVDACFTRDCQCILTCSTDECLRLFDKATGE---------------LLE 452 (540)
Q Consensus 392 ~~~~~dg~i~iwd~~~~~~--~~~~~~--~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~---------------~~~ 452 (540)
++++.|+.|++||.++++. ...+.+ ..|.+++|+|++++|++++.|++|++||..... ++.
T Consensus 166 ~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~ 245 (345)
T 3fm0_A 166 ASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCIC 245 (345)
T ss_dssp EEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEEE
T ss_pred EEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccceeeccCCccceeE
Confidence 9999999999999988753 345554 579999999999999999999999999974321 222
Q ss_pred hhcc-CcCCcceEEEEecCCCCeEEEeeCCCcEEEEEecCCcc----eeEE---EecccceeeeEEEEcCCC-cEEEeec
Q psy18231 453 EYKG-HKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQ----ISTL---IHSVGKAVVNSLCSHPTR-KHIMSAC 523 (540)
Q Consensus 453 ~~~~-~~~~v~~~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~----~~~~---~~~~~~~~v~~l~~s~d~-~~l~s~~ 523 (540)
.+.+ |...|+.+ +|++++..|++++.|+.|++|+...+.. ...+ ...+|...|++++|+|++ .+|++++
T Consensus 246 ~~~~~h~~~v~~v--~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~laS~s 323 (345)
T 3fm0_A 246 TLSGFHSRTIYDI--AWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCS 323 (345)
T ss_dssp EECSSCSSCEEEE--EECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEEECSSSTTEEEEEE
T ss_pred EecCCCCCcEEEE--EEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecccccCcEeEeEEeCCCceEEEEcC
Confidence 3333 77777777 8999999999999999999999876531 1111 123789999999999998 4999999
Q ss_pred -CCeeEEEEcccccC
Q psy18231 524 -GNNVKLWTAEEDYG 537 (540)
Q Consensus 524 -d~~i~iw~~~~~~~ 537 (540)
||+|++|++.+...
T Consensus 324 ~Dg~v~~W~~~~~~~ 338 (345)
T 3fm0_A 324 DDGEVAFWKYQRPEG 338 (345)
T ss_dssp TTSCEEEEEECC---
T ss_pred CCCcEEEEEecCCCC
Confidence 99999999987654
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-45 Score=353.44 Aligned_cols=282 Identities=22% Similarity=0.347 Sum_probs=245.2
Q ss_pred eeeeecCeEEEEeCCCCCEEEEeeCCCcEEEEcCCCCeeEEEeecCCc------------------ceeEEEEeeCCCeE
Q psy18231 160 ELFVLSGLMHTRFPVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAH------------------EVNDATAACDSSQI 221 (540)
Q Consensus 160 ~~~h~~~v~~v~~spdg~~lat~~~dg~i~iwd~~~~~~~~~~~~h~~------------------~v~~l~~sp~~~~l 221 (540)
...|.+.|.+++|+|||++||+|+ ++++++|++.+++.+..+..|.. .|.+++|+|++++|
T Consensus 60 ~~~h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l 138 (393)
T 1erj_A 60 SLDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFL 138 (393)
T ss_dssp EEECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEE
T ss_pred ecCCCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEE
Confidence 346999999999999999999987 78999999999998888866542 48999999999999
Q ss_pred EEeeCCCeEEEEEcCCCceeEeccccCCceeEEEECCCCCEEEEecCCCcEEEEEecCCCCCCcchhhhhHhhhhcCCce
Q psy18231 222 ASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQVRCLNEALKEARDSI 301 (540)
Q Consensus 222 ~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (540)
++|+.|++|++||+.+++.+..+.+|...|.+++|+|++++|++++.|++|++||+++++..
T Consensus 139 ~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~------------------ 200 (393)
T 1erj_A 139 ATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCS------------------ 200 (393)
T ss_dssp EEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEE------------------
T ss_pred EEEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeE------------------
Confidence 99999999999999999999999999999999999999999999999999999999876410
Q ss_pred eEEEEeecccccccccCceeeEEEeeeecccccceeeeeeccceeEEEeecccceecccccccccccchhhhhhcccccE
Q psy18231 302 TSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEARDSI 381 (540)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 381 (540)
....+...+
T Consensus 201 -----------------------------------------------------------------------~~~~~~~~v 209 (393)
T 1erj_A 201 -----------------------------------------------------------------------LTLSIEDGV 209 (393)
T ss_dssp -----------------------------------------------------------------------EEEECSSCE
T ss_pred -----------------------------------------------------------------------EEEEcCCCc
Confidence 001234568
Q ss_pred EEEEecC---CeeEeeeCCCeEEEEeCCCCceEEeee---------CCceEEEEEecCCcEEEeecCCCeEEEEeccccc
Q psy18231 382 TSVHVSD---HEILTASLDCRIRRYDIRTGNLVTDYV---------GEPIVDACFTRDCQCILTCSTDECLRLFDKATGE 449 (540)
Q Consensus 382 ~~l~~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~---------~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~ 449 (540)
.+++++| .++++++.|+.|++||+++++.+..+. ...|.+++|+|++++|++++.|+.|++||+++..
T Consensus 210 ~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~ 289 (393)
T 1erj_A 210 TTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNAN 289 (393)
T ss_dssp EEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC----
T ss_pred EEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCC
Confidence 8888887 789999999999999999998877662 2579999999999999999999999999997643
Q ss_pred ------------hhhhhccCcCCcceEEEEecCCCCeEEEeeCCCcEEEEEecCCcceeEEEecccceeeeEEEEcC---
Q psy18231 450 ------------LLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHP--- 514 (540)
Q Consensus 450 ------------~~~~~~~~~~~v~~~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~--- 514 (540)
+...+.+|...|..+ +|++++++|++|+.|+.|++||+.+++++..+. +|...|.+++|++
T Consensus 290 ~~~~~~~~~~~~~~~~~~~h~~~v~~~--~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~--~h~~~v~~v~~~~~~~ 365 (393)
T 1erj_A 290 NKSDSKTPNSGTCEVTYIGHKDFVLSV--ATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQ--GHRNSVISVAVANGSS 365 (393)
T ss_dssp -----------CEEEEEECCSSCEEEE--EECGGGCEEEEEETTSEEEEEETTTCCEEEEEE--CCSSCEEEEEECSSCT
T ss_pred CcccccCCCCCcceEEEecccCcEEEE--EECCCCCEEEEEeCCCeEEEEECCCCeEEEEEC--CCCCCEEEEEecCCcC
Confidence 344667888888777 899999999999999999999999999999998 8999999999986
Q ss_pred ---CCcEEEeec-CCeeEEEEcccc
Q psy18231 515 ---TRKHIMSAC-GNNVKLWTAEED 535 (540)
Q Consensus 515 ---d~~~l~s~~-d~~i~iw~~~~~ 535 (540)
++++|++++ |++|+||++++.
T Consensus 366 ~~p~~~~l~sgs~Dg~i~iW~~~~~ 390 (393)
T 1erj_A 366 LGPEYNVFATGSGDCKARIWKYKKI 390 (393)
T ss_dssp TCTTCEEEEEEETTSEEEEEEEEEC
T ss_pred cCCCCCEEEEECCCCcEEECccccc
Confidence 689999999 999999998753
|
| >2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.6e-44 Score=364.95 Aligned_cols=368 Identities=24% Similarity=0.352 Sum_probs=290.4
Q ss_pred hhhhcccccceeeeecccccc--eeeeeecCeEEEEeCCCCCEEEEeeCCCcEEEEcCCCCeeEEEeecCCcceeEEEEe
Q psy18231 138 RILYELPKEWSIRVYRPLTVN--RELFVLSGLMHTRFPVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAA 215 (540)
Q Consensus 138 ~~~~~~~~~~~i~~~~~~~~~--~~~~h~~~v~~v~~spdg~~lat~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s 215 (540)
..++..+.++.|++|+..... ....|.+.|.+++|+|++++|++++.|+.|++||. +++.+..+.+|...|.+++|+
T Consensus 193 ~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~i~~w~~-~~~~~~~~~~~~~~v~~v~~~ 271 (577)
T 2ymu_A 193 QTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVNGVAFR 271 (577)
T ss_dssp SCEEEEETTSEEEEECTTSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECT-TSCEEEEECCCSSCEEEEEEC
T ss_pred CEEEEEcCCCEEEEEeCCCcEEEEEecCCCCEEEEEECCCCCEEEEEeCCCEEEEEeC-CCCEEEEEecCCCCEEEEEEc
Confidence 355677889999999965432 34568999999999999999999999999999995 677888999999999999999
Q ss_pred eCCCeEEEeeCCCeEEEEEcCCCceeEeccccCCceeEEEECCCCCEEEEecCCCcEEEEEecCCCCCCcchhhhhHhhh
Q psy18231 216 CDSSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQVRCLNEALK 295 (540)
Q Consensus 216 p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 295 (540)
|++++|++++.|+.|++||. +++.+..+.+|...|.+++|+|++++|++++.||+|++||+....... +.
T Consensus 272 ~d~~~l~~~~~d~~i~~w~~-~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~~~~~---------~~ 341 (577)
T 2ymu_A 272 PDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQHLQT---------LT 341 (577)
T ss_dssp TTSSEEEEEETTSCEEEEET-TSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSCEEEE---------EC
T ss_pred CCCCEEEEEeCCCEEEEEeC-CCcEEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeeEE---------Ee
Confidence 99999999999999999996 577788889999999999999999999999999999999976543211 11
Q ss_pred hcCCceeEEEEeeccccc-ccccCceeeEEEeeee--------cccccceeeeeecccee-EEEeecccceecccccccc
Q psy18231 296 EARDSITSVHSLVKSTKN-HLSNGLLTKLVFAFRC--------KYLNGLLSGVLMSTQHL-MVLLDFLGSTQIGDVTPIS 365 (540)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 365 (540)
.+... +..+.+.+.+ .+..+.....+..|+. ......+..+.++.++. +......+...+|+.
T Consensus 342 ~~~~~---v~~~~~s~~g~~l~~~~~dg~v~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~---- 414 (577)
T 2ymu_A 342 GHSSS---VWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR---- 414 (577)
T ss_dssp CCSSC---EEEEEECTTSSEEEEEETTSEEEEEETTCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECT----
T ss_pred CCCCC---EEEEEECCCCCEEEEEeCCCEEEEEcCCCCEEEEecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeC----
Confidence 12222 2223333322 2222222223333321 11222333444444433 333334444444442
Q ss_pred cccchhhhhhcccccEEEEEecC--CeeEeeeCCCeEEEEeCCCCceEEeeeC--CceEEEEEecCCcEEEeecCCCeEE
Q psy18231 366 IHNSCFQALKEARDSITSVHVSD--HEILTASLDCRIRRYDIRTGNLVTDYVG--EPIVDACFTRDCQCILTCSTDECLR 441 (540)
Q Consensus 366 ~~~~~~~~~~~~~~~v~~l~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~--~~i~~~~~sp~~~~l~~~~~dg~i~ 441 (540)
....+..+.+|...|.+++|+| +++++++.|+.|++||.. ++.+..+.+ ..|.+++|+|++++|++++.|+.|+
T Consensus 415 -~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~-~~~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~ 492 (577)
T 2ymu_A 415 -NGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRN-GQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVK 492 (577)
T ss_dssp -TCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETT-SCEEEEEECCSSCEEEEEECTTSCEEEEEETTSEEE
T ss_pred -CCCEEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEECC-CCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEE
Confidence 2334556788999999999998 789999999999999974 666666654 5899999999999999999999999
Q ss_pred EEeccccchhhhhccCcCCcceEEEEecCCCCeEEEeeCCCcEEEEEecCCcceeEEEecccceeeeEEEEcCCCcEEEe
Q psy18231 442 LFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMS 521 (540)
Q Consensus 442 i~d~~~~~~~~~~~~~~~~v~~~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s 521 (540)
+||. +++.+..+.+|...|..+ +|+|+|++|++++.||.|++|| .+++++..+. +|.+.|++++|+|||++|+|
T Consensus 493 iw~~-~~~~~~~~~~h~~~v~~l--~~s~dg~~l~s~~~dg~v~lwd-~~~~~~~~~~--~h~~~v~~~~fs~dg~~l~s 566 (577)
T 2ymu_A 493 LWNR-NGQLLQTLTGHSSSVRGV--AFSPDGQTIASASDDKTVKLWN-RNGQLLQTLT--GHSSSVWGVAFSPDGQTIAS 566 (577)
T ss_dssp EEET-TSCEEEEEECCSSCEEEE--EECTTSSCEEEEETTSEEEEEC-TTSCEEEEEE--CCSSCEEEEEECTTSSCEEE
T ss_pred EEcC-CCCEEEEEeCCCCCEEEE--EEcCCCCEEEEEECcCEEEEEe-CCCCEEEEEc--CCCCCEEEEEEcCCCCEEEE
Confidence 9995 688889999999999888 8999999999999999999999 4788888888 99999999999999999999
Q ss_pred ec-CCeeEEEE
Q psy18231 522 AC-GNNVKLWT 531 (540)
Q Consensus 522 ~~-d~~i~iw~ 531 (540)
++ |++|++||
T Consensus 567 ~~~D~~i~~Wd 577 (577)
T 2ymu_A 567 ASSDKTVKLWN 577 (577)
T ss_dssp EETTSCEEEEC
T ss_pred EeCCCEEEEeC
Confidence 99 99999997
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.4e-44 Score=336.04 Aligned_cols=285 Identities=16% Similarity=0.226 Sum_probs=229.4
Q ss_pred eeeeecCeEEEEeCCCCCEEEEeeCCCcEEEEcCCCC--eeEEEe-ec-CCcceeEEEEeeCCCeEEEeeCCCeEEEEEc
Q psy18231 160 ELFVLSGLMHTRFPVDGSYCLTCGSDKKIKLWNPYRN--LLLKTY-GG-HAHEVNDATAACDSSQIASGASDKSVILWEV 235 (540)
Q Consensus 160 ~~~h~~~v~~v~~spdg~~lat~~~dg~i~iwd~~~~--~~~~~~-~~-h~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~ 235 (540)
..+|.++|.+++|+|+ +||+|+.|++|++||+.++ ..+..+ .+ |...|.+++|+|++++|++++.|++|+|||+
T Consensus 10 ~~~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~iw~~ 87 (330)
T 2hes_X 10 LKLYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAK 87 (330)
T ss_dssp EECCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTSCEEEEEC
T ss_pred eccCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCCcEEEEEc
Confidence 4579999999999998 9999999999999999875 455556 44 9999999999999999999999999999998
Q ss_pred CC-------CceeEeccccCCceeEEEECCCCCEEEEecCCCcEEEEEecCCCCCCcchhhhhHhhhhcCCceeEEEEee
Q psy18231 236 TT-------GQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLV 308 (540)
Q Consensus 236 ~~-------~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (540)
+. .+.+..+.+|...|.+++|+|++++|++++.|++|++||++......
T Consensus 88 ~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~------------------------ 143 (330)
T 2hes_X 88 EESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEY------------------------ 143 (330)
T ss_dssp -------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCC------------------------
T ss_pred ccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCe------------------------
Confidence 53 34567788999999999999999999999999999999995432100
Q ss_pred cccccccccCceeeEEEeeeecccccceeeeeeccceeEEEeecccceecccccccccccchhhhhhcccccEEEEEecC
Q psy18231 309 KSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEARDSITSVHVSD 388 (540)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~ 388 (540)
.++..+.+|...|.+++|+|
T Consensus 144 ------------------------------------------------------------~~~~~~~~h~~~v~~v~~~p 163 (330)
T 2hes_X 144 ------------------------------------------------------------ECISVLQEHSQDVKHVIWHP 163 (330)
T ss_dssp ------------------------------------------------------------EEEEEECCCSSCEEEEEECS
T ss_pred ------------------------------------------------------------EEEEEeccCCCceEEEEECC
Confidence 01124567899999999998
Q ss_pred --CeeEeeeCCCeEEEEeCCCC--ceEEeeeC--CceEEEEEecC--CcEEEeecCCCeEEEEecccc--------chhh
Q psy18231 389 --HEILTASLDCRIRRYDIRTG--NLVTDYVG--EPIVDACFTRD--CQCILTCSTDECLRLFDKATG--------ELLE 452 (540)
Q Consensus 389 --~~l~~~~~dg~i~iwd~~~~--~~~~~~~~--~~i~~~~~sp~--~~~l~~~~~dg~i~i~d~~~~--------~~~~ 452 (540)
.+|++++.|++|++||..++ +++..+.+ ..|.+++|+|+ +.+|++++.|++|++||+..+ ....
T Consensus 164 ~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~ 243 (330)
T 2hes_X 164 SEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEA 243 (330)
T ss_dssp SSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEEE
T ss_pred CCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeEEee
Confidence 78999999999999999876 56666765 57999999998 778999999999999999765 3344
Q ss_pred hhcc-CcCCcceEEEEecCCCCeEEEeeCCCcEEEEEecCCcc--eeEEEecccce-eeeEEEEcC--CCcEEEeec-CC
Q psy18231 453 EYKG-HKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQ--ISTLIHSVGKA-VVNSLCSHP--TRKHIMSAC-GN 525 (540)
Q Consensus 453 ~~~~-~~~~v~~~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~--~~~~~~~~~~~-~v~~l~~s~--d~~~l~s~~-d~ 525 (540)
.+.. |...|..+ +|++++ +|++++.||.|++||..+++. .... ...|.. .|++++|+| ++++|++++ ||
T Consensus 244 ~~~~~h~~~v~~v--~~s~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~-~~~h~~~~v~~v~~~~~~~~~~las~s~Dg 319 (330)
T 2hes_X 244 ILPDVHKRQVYNV--AWGFNG-LIASVGADGVLAVYEEVDGEWKVFAKR-ALCHGVYEINVVKWLELNGKTILATGGDDG 319 (330)
T ss_dssp ECCSCCSSCEEEE--EECTTS-CEEEEETTSCEEEEEEETTEEEEEEEE-SCTTTTSCEEEEEEC-----CCEEEEETTS
T ss_pred ecccccccceEEE--EEcCCC-EEEEEeCCCEEEEEEcCCCceEEEecc-ccccccceEEEEEEecCCCceEEEEecCCC
Confidence 4544 88888887 788654 899999999999999987742 2222 126776 899999999 789999999 99
Q ss_pred eeEEEEccc
Q psy18231 526 NVKLWTAEE 534 (540)
Q Consensus 526 ~i~iw~~~~ 534 (540)
+|+||++++
T Consensus 320 ~v~~W~~~~ 328 (330)
T 2hes_X 320 IVNFWSLEK 328 (330)
T ss_dssp EEEEEEC--
T ss_pred cEEEEEecc
Confidence 999999865
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-43 Score=343.54 Aligned_cols=270 Identities=24% Similarity=0.395 Sum_probs=239.9
Q ss_pred cceeccccchhhhhhcccccceeeeecccccc---eeeeeecCeEEEEeCCCCCEEEEeeCCCcEEEEcCCCCeeEEEee
Q psy18231 127 PLLFSLPRTITRILYELPKEWSIRVYRPLTVN---RELFVLSGLMHTRFPVDGSYCLTCGSDKKIKLWNPYRNLLLKTYG 203 (540)
Q Consensus 127 ~~~~s~~~~~~~~~~~~~~~~~i~~~~~~~~~---~~~~h~~~v~~v~~spdg~~lat~~~dg~i~iwd~~~~~~~~~~~ 203 (540)
.+.|+++ ...+++++.|++|++|+..+.. ...+|.+.|.+++|+|++++|++|+.|++|++||+.+++.+..+.
T Consensus 113 ~~~~~p~---~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~~~~~~~ 189 (410)
T 1vyh_C 113 RVIFHPV---FSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMH 189 (410)
T ss_dssp EEEECSS---SSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEECCC
T ss_pred EEEEcCC---CCEEEEEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEc
Confidence 3445554 3467788999999999987754 345699999999999999999999999999999999999999999
Q ss_pred cCCcceeEEEEeeCCCeEEEeeCCCeEEEEEcCCCceeEeccccCCceeEEEECCCCCEEEEecCCCcEEEEEecCCCCC
Q psy18231 204 GHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHH 283 (540)
Q Consensus 204 ~h~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~ 283 (540)
+|...|.+++|+|++++|++|+.|++|++||+++++++..+.+|...|.++.|+|++.+|++++.||+|++||+.+++..
T Consensus 190 ~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~~~ 269 (410)
T 1vyh_C 190 GHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECK 269 (410)
T ss_dssp CCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEE
T ss_pred CCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCCEEEEEcCCCeEEEEECCCCcee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999876520
Q ss_pred CcchhhhhHhhhhcCCceeEEEEeecccccccccCceeeEEEeeeecccccceeeeeeccceeEEEeecccceecccccc
Q psy18231 284 PIQVRCLNEALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTP 363 (540)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (540)
T Consensus 270 -------------------------------------------------------------------------------- 269 (410)
T 1vyh_C 270 -------------------------------------------------------------------------------- 269 (410)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccchhhhhhcccccEEEEEecC----------------------CeeEeeeCCCeEEEEeCCCCceEEeeeC--Cce
Q psy18231 364 ISIHNSCFQALKEARDSITSVHVSD----------------------HEILTASLDCRIRRYDIRTGNLVTDYVG--EPI 419 (540)
Q Consensus 364 ~~~~~~~~~~~~~~~~~v~~l~~~~----------------------~~l~~~~~dg~i~iwd~~~~~~~~~~~~--~~i 419 (540)
..+..|...|.+++|+| .++++|+.|+.|++||+++++++..+.+ ..|
T Consensus 270 --------~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~v 341 (410)
T 1vyh_C 270 --------AELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWV 341 (410)
T ss_dssp --------EEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCE
T ss_pred --------eEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceEEEEECCCCcE
Confidence 12334455555555544 4799999999999999999999988876 479
Q ss_pred EEEEEecCCcEEEeecCCCeEEEEeccccchhhhhccCcCCcceEEEEecCCCCeEEEeeCCCcEEEEEe
Q psy18231 420 VDACFTRDCQCILTCSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQL 489 (540)
Q Consensus 420 ~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~s~~~~~l~s~s~dg~i~iwd~ 489 (540)
.+++|+|++++|++++.|+.|++||+.+++++..+.+|...|+++ +|+|++.+|++|+.||+|++|++
T Consensus 342 ~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~h~~~v~~l--~~~~~~~~l~sgs~D~~i~vW~~ 409 (410)
T 1vyh_C 342 RGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSL--DFHKTAPYVVTGSVDQTVKVWEC 409 (410)
T ss_dssp EEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEE--EECSSSSCEEEEETTSEEEEEC-
T ss_pred EEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEE--EEcCCCCEEEEEeCCCcEEEEeC
Confidence 999999999999999999999999999999999999999999888 89999999999999999999986
|
| >2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-42 Score=355.05 Aligned_cols=351 Identities=25% Similarity=0.364 Sum_probs=266.9
Q ss_pred ceeeeeecCeEEEEeCCCCCEEEEeeCCCcEEEEcCCCCeeEEEeecCCcceeEEEEeeCCCeEEEeeCCCeEEEEEcCC
Q psy18231 158 NRELFVLSGLMHTRFPVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTT 237 (540)
Q Consensus 158 ~~~~~h~~~v~~v~~spdg~~lat~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~ 237 (540)
++..+|.+.|++++|||||++||+|+.|++|+|||. +++++.++.+|.+.|++++|+||+++|++++.|++|+|||+ +
T Consensus 10 ~~L~GH~~~V~~~a~spdg~~las~~~d~~v~iWd~-~~~~~~~l~gh~~~V~~l~fspdg~~las~~~d~~i~vWd~-~ 87 (577)
T 2ymu_A 10 NRLEAHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR-N 87 (577)
T ss_dssp EEECCCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEET-T
T ss_pred eEECCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEC-CCCEEEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEEC-C
Confidence 456789999999999999999999999999999994 78899999999999999999999999999999999999996 6
Q ss_pred CceeEeccccCCceeEEEECCCCCEEEEecCCCcEEEEEecCCCCCCcchhhhhHhhhhcCCceeEEEEeecccccccc-
Q psy18231 238 GQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHLS- 316 (540)
Q Consensus 238 ~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 316 (540)
++.+..+.+|...|.+++|+|++++|++++.|+.+++|+......... ......+. .....+.....
T Consensus 88 ~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~~~~~~~~~~~~~~~---------~~~~~~v~---~~~~~~~~~~~~ 155 (577)
T 2ymu_A 88 GQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTL---------TGHSSSVW---GVAFSPDGQTIA 155 (577)
T ss_dssp SCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCCEEEEE---------CCCSSCEE---EEEECTTSSCEE
T ss_pred CCEEEEEECCCCCEEEEEECCCCCEEEEEcCCCceeecccccceeeec---------cCCCCcee---eeeeecCCccce
Confidence 788899999999999999999999999999999999999765431110 01111111 11111111110
Q ss_pred cCceeeEEEee--------eecccccceeeeeeccce-eEEEeecccceecccccccccccchhhhhhcccccEEEEEec
Q psy18231 317 NGLLTKLVFAF--------RCKYLNGLLSGVLMSTQH-LMVLLDFLGSTQIGDVTPISIHNSCFQALKEARDSITSVHVS 387 (540)
Q Consensus 317 ~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~ 387 (540)
..........+ ........+.......++ .+......+...+|+. .......+.+|...|.+++|+
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~w~~-----~~~~~~~~~~~~~~v~~~~~s 230 (577)
T 2ymu_A 156 SASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR-----NGQLLQTLTGHSSSVRGVAFS 230 (577)
T ss_dssp EEETTSEEEEECTTSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECT-----TSCEEEEEECCSSCEEEEEEC
T ss_pred ecccccceeccccceeeeeeccCCCcceeeeeecCCCCEEEEEcCCCEEEEEeC-----CCcEEEEEecCCCCEEEEEEC
Confidence 00000000000 001111122222222222 2222233333333332 223344677899999999999
Q ss_pred C--CeeEeeeCCCeEEEEeCCCCceEEeeeC--CceEEEEEecCCcEEEeecCCCeEEEEeccccchhhhhccCcCCcce
Q psy18231 388 D--HEILTASLDCRIRRYDIRTGNLVTDYVG--EPIVDACFTRDCQCILTCSTDECLRLFDKATGELLEEYKGHKSGDFR 463 (540)
Q Consensus 388 ~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~--~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~ 463 (540)
| ..+++++.|+.|++||.. ++.+..+.+ ..|.+++|+|+++.+++++.|+.|++||. +++.+..+.+|...+..
T Consensus 231 ~dg~~l~~~~~d~~i~~w~~~-~~~~~~~~~~~~~v~~v~~~~d~~~l~~~~~d~~i~~w~~-~~~~~~~~~~h~~~v~~ 308 (577)
T 2ymu_A 231 PDGQTIASASDDKTVKLWNRN-GQLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWG 308 (577)
T ss_dssp TTSSCEEEEETTSCEEEECTT-SCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEET-TSCEEEEECCCSSCEEE
T ss_pred CCCCEEEEEeCCCEEEEEeCC-CCEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCEEEEEeC-CCcEEEEEecCCCCeEE
Confidence 8 789999999999999965 566666654 57999999999999999999999999996 56777888999999888
Q ss_pred EEEEecCCCCeEEEeeCCCcEEEEEecCCcceeEEEecccceeeeEEEEcCCCcEEEeec-CCeeEEEEccc
Q psy18231 464 IECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC-GNNVKLWTAEE 534 (540)
Q Consensus 464 ~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~-d~~i~iw~~~~ 534 (540)
+ +|+|++++|++++.|+.|++||+. ++.+..+. .|...|.+++|+|++++|++++ |+.|++|+...
T Consensus 309 ~--~~~~~~~~l~t~~~d~~i~~w~~~-~~~~~~~~--~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~~~ 375 (577)
T 2ymu_A 309 V--AFSPDGQTIASASDDKTVKLWNRN-GQHLQTLT--GHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNG 375 (577)
T ss_dssp E--EECTTSSEEEEEETTSCEEEEETT-SCEEEEEC--CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTC
T ss_pred E--EECCCCCEEEEEeCCCeEEEEeCC-CCeeEEEe--CCCCCEEEEEECCCCCEEEEEeCCCEEEEEcCCC
Confidence 7 899999999999999999999964 55566666 8999999999999999999999 99999999653
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-42 Score=339.99 Aligned_cols=336 Identities=18% Similarity=0.197 Sum_probs=260.5
Q ss_pred eeeeecCeEEEEeCCCCC-EEEEeeCCCcEEEEcC----CCCe------eEEEeec----------CCcceeEEEEeeCC
Q psy18231 160 ELFVLSGLMHTRFPVDGS-YCLTCGSDKKIKLWNP----YRNL------LLKTYGG----------HAHEVNDATAACDS 218 (540)
Q Consensus 160 ~~~h~~~v~~v~~spdg~-~lat~~~dg~i~iwd~----~~~~------~~~~~~~----------h~~~v~~l~~sp~~ 218 (540)
...|.++|++++|+|+++ +||+|+.||.|++||+ .+++ ....+.. |.+.|++++|+|++
T Consensus 41 ~~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~ 120 (425)
T 1r5m_A 41 EIVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDG 120 (425)
T ss_dssp EEEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTTS
T ss_pred eeeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCCC
Confidence 345779999999999999 9999999999999999 8887 5555554 68899999999999
Q ss_pred CeEEEeeCCCeEEEEEcCCCceeEeccccCCceeEEEECCCCCEEEEecCCCcEEEEEecCCCCCCcchhhhhHhhhhcC
Q psy18231 219 SQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQVRCLNEALKEAR 298 (540)
Q Consensus 219 ~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 298 (540)
++|++++.||.|++|| .+++.+..+..|...|.+++|+|++++|++++.||.|++||+.+++..... ....
T Consensus 121 ~~l~~~~~dg~i~i~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~--~~~~------ 191 (425)
T 1r5m_A 121 NSIVTGVENGELRLWN-KTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHF--ELKE------ 191 (425)
T ss_dssp SEEEEEETTSCEEEEE-TTSCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEE--CCC-------
T ss_pred CEEEEEeCCCeEEEEe-CCCCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEe--eccc------
Confidence 9999999999999999 678888899999999999999999999999999999999999876521111 0000
Q ss_pred CceeEEEEeecccccccccCceeeEEEeeeecccccceeeeeeccceeEEEeecccceecccccccccccchhhhhhccc
Q psy18231 299 DSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEAR 378 (540)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (540)
........... .........+.+..++.+......+...++++... .....+..|.
T Consensus 192 ~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~----~~~~~~~~~~ 247 (425)
T 1r5m_A 192 TGGSSINAENH--------------------SGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEK----TPTGKLIGHH 247 (425)
T ss_dssp ----------------------------------CCCBSCCEEEETTEEEEECGGGCEEEEETTCS----SCSEEECCCS
T ss_pred cCccceeeccc--------------------cCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCC----ceeeeeccCC
Confidence 00000000000 00000011111222223333333333333333221 2233456788
Q ss_pred ccEEEEEecC--CeeEeeeCCCeEEEEeCCCCceEEeeeC--CceEEEEEecCCcEEEeecCCCeEEEEeccccchhhhh
Q psy18231 379 DSITSVHVSD--HEILTASLDCRIRRYDIRTGNLVTDYVG--EPIVDACFTRDCQCILTCSTDECLRLFDKATGELLEEY 454 (540)
Q Consensus 379 ~~v~~l~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~--~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~ 454 (540)
..|.+++|+| .++++++.|+.|++||+++++.+..+.. ..+.+++|+|++ ++++++.|+.|++||+.+++.+..+
T Consensus 248 ~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~ 326 (425)
T 1r5m_A 248 GPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALS 326 (425)
T ss_dssp SCEEEEEEETTTTEEEEEETTSCEEEECSSSBSCSEEECCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEE
T ss_pred CceEEEEECCCCCEEEEEcCCCEEEEEECCCCccceEecCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEec
Confidence 9999999998 7899999999999999999988877754 689999999999 9999999999999999999999999
Q ss_pred ccCcCCcceEEEEecCCCCeEEEeeCCCcEEEEEecCCc--------------------ceeEEEecccce--eeeEEEE
Q psy18231 455 KGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSS--------------------QISTLIHSVGKA--VVNSLCS 512 (540)
Q Consensus 455 ~~~~~~v~~~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~--------------------~~~~~~~~~~~~--~v~~l~~ 512 (540)
..|...+..+ +|+|++++|++++.||.|++||+.+++ .+..+. .|.. .|++++|
T Consensus 327 ~~~~~~i~~~--~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~v~~~~~ 402 (425)
T 1r5m_A 327 IVDGVPIFAG--RISQDGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQ--SSQDNDYIFDLSW 402 (425)
T ss_dssp ECTTCCEEEE--EECTTSSEEEEEETTSCEEEEECHHHHC--------------CEECCEEEEEC--CTTCCCCEEEEEE
T ss_pred ccCCccEEEE--EEcCCCCEEEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhc--CcccCCceEEEEc
Confidence 9999888877 899999999999999999999999887 777777 7766 9999999
Q ss_pred cCCCcEEEeec-CCeeEEEEcc
Q psy18231 513 HPTRKHIMSAC-GNNVKLWTAE 533 (540)
Q Consensus 513 s~d~~~l~s~~-d~~i~iw~~~ 533 (540)
+|++++|++++ ||.|++|+++
T Consensus 403 s~~~~~l~~~~~dg~i~iw~~~ 424 (425)
T 1r5m_A 403 NCAGNKISVAYSLQEGSVVAIP 424 (425)
T ss_dssp CTTSSEEEEEESSSCCEEEECC
T ss_pred cCCCceEEEEecCceEEEEeec
Confidence 99999999999 9999999986
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.6e-43 Score=328.56 Aligned_cols=263 Identities=17% Similarity=0.247 Sum_probs=241.7
Q ss_pred hhhhhcccccceeeeecccccc-----eeeeeecCeEEEEeCCCCCEEEEeeCCCcEEEEcCCCCeeEEEeecCCcceeE
Q psy18231 137 TRILYELPKEWSIRVYRPLTVN-----RELFVLSGLMHTRFPVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVND 211 (540)
Q Consensus 137 ~~~~~~~~~~~~i~~~~~~~~~-----~~~~h~~~v~~v~~spdg~~lat~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~ 211 (540)
...+++++.|++|++|+..... ...+|...|.+++|+|++.++++++.|++|++||+.+++.+..+..|...+.+
T Consensus 48 ~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~lWd~~~~~~~~~~~~~~~~~~~ 127 (321)
T 3ow8_A 48 SETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWT 127 (321)
T ss_dssp -CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCCCC
T ss_pred CCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCCEEEEEeCCCccEEE
Confidence 4567889999999999976543 23569999999999999999999999999999999999999999999999999
Q ss_pred EEEeeCCCeEEEeeCCCeEEEEEcCCCceeEeccccCCceeEEEECCCCCEEEEecCCCcEEEEEecCCCCCCcchhhhh
Q psy18231 212 ATAACDSSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQVRCLN 291 (540)
Q Consensus 212 l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 291 (540)
++|+|++++|++++.||.|++||+++++....+..|...|.+++|+|++++|++++.||.|++||+++++.
T Consensus 128 ~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~~--------- 198 (321)
T 3ow8_A 128 LAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKL--------- 198 (321)
T ss_dssp EEECTTSSEEEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEE---------
T ss_pred EEECCCCCEEEEEcCCCcEEEEEcCCCceeEEecCCCceEEEEEECCCCCEEEEEcCCCeEEEEECCCCcE---------
Confidence 99999999999999999999999999999999999999999999999999999999999999999987641
Q ss_pred HhhhhcCCceeEEEEeecccccccccCceeeEEEeeeecccccceeeeeeccceeEEEeecccceecccccccccccchh
Q psy18231 292 EALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCF 371 (540)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (540)
+
T Consensus 199 -------------------------------------------------------------------------------~ 199 (321)
T 3ow8_A 199 -------------------------------------------------------------------------------L 199 (321)
T ss_dssp -------------------------------------------------------------------------------E
T ss_pred -------------------------------------------------------------------------------E
Confidence 1
Q ss_pred hhhhcccccEEEEEecC--CeeEeeeCCCeEEEEeCCCCceEEeeeC--CceEEEEEecCCcEEEeecCCCeEEEEeccc
Q psy18231 372 QALKEARDSITSVHVSD--HEILTASLDCRIRRYDIRTGNLVTDYVG--EPIVDACFTRDCQCILTCSTDECLRLFDKAT 447 (540)
Q Consensus 372 ~~~~~~~~~v~~l~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~--~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~ 447 (540)
..+.+|...|.+++|+| .+|++++.|+.|++||+++++....+.+ ..|.+++|+|++++|++++.|++|++||+.+
T Consensus 200 ~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~ 279 (321)
T 3ow8_A 200 HTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGT 279 (321)
T ss_dssp EEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT
T ss_pred EEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCC
Confidence 24567888999999998 7899999999999999999998888876 4699999999999999999999999999999
Q ss_pred cchhhhhccCcCCcceEEEEecCCCCeEEEeeCCCcEEEEEe
Q psy18231 448 GELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQL 489 (540)
Q Consensus 448 ~~~~~~~~~~~~~v~~~~~~~s~~~~~l~s~s~dg~i~iwd~ 489 (540)
++++.++.+|...|..+ +|+|++++|++++.||+|++||.
T Consensus 280 ~~~~~~~~~h~~~v~~v--~~s~~g~~l~s~~~d~~i~vwd~ 319 (321)
T 3ow8_A 280 RTCVHTFFDHQDQVWGV--KYNGNGSKIVSVGDDQEIHIYDC 319 (321)
T ss_dssp TEEEEEECCCSSCEEEE--EECTTSSEEEEEETTCCEEEEEC
T ss_pred CEEEEEEcCCCCcEEEE--EECCCCCEEEEEeCCCeEEEEeC
Confidence 99999999999999888 89999999999999999999995
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.9e-44 Score=349.43 Aligned_cols=308 Identities=14% Similarity=0.199 Sum_probs=260.2
Q ss_pred cccceeeeecccccc-----eeeeeecCeEEEEeCCCCCEEEEeeCCCcEEEEcCCC----CeeEEEeecCCcceeEEEE
Q psy18231 144 PKEWSIRVYRPLTVN-----RELFVLSGLMHTRFPVDGSYCLTCGSDKKIKLWNPYR----NLLLKTYGGHAHEVNDATA 214 (540)
Q Consensus 144 ~~~~~i~~~~~~~~~-----~~~~h~~~v~~v~~spdg~~lat~~~dg~i~iwd~~~----~~~~~~~~~h~~~v~~l~~ 214 (540)
+.++.|++|+..+.. ....|...|.+++|+|++++|++++.||.|++||+.+ .+.+..+.+|...|++++|
T Consensus 42 ~~d~~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~ 121 (416)
T 2pm9_A 42 STDSSLELWSLLAADSEKPIASLQVDSKFNDLDWSHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKF 121 (416)
T ss_dssp CCCCCCEEEESSSGGGCSCSCCCCCSSCEEEEEECSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEE
T ss_pred CCCCeEEEEEccCCCCCcEEEEEecCCceEEEEECCCCCeEEEEccCCeEEEeecccccccccchhhccCCccceEEEEE
Confidence 788999999987653 3356899999999999999999999999999999987 4588889999999999999
Q ss_pred eeC-CCeEEEeeCCCeEEEEEcCCCc------eeEe---ccccCCceeEEEECCC-CCEEEEecCCCcEEEEEecCCCCC
Q psy18231 215 ACD-SSQIASGASDKSVILWEVTTGQ------PVRR---WREHASKVTCVKFNED-SSVVISGSQDNTVMMWDVKSRSHH 283 (540)
Q Consensus 215 sp~-~~~l~s~s~dg~i~iwd~~~~~------~~~~---~~~h~~~v~~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~ 283 (540)
+|+ +++|++++.|+.|++||+.+++ .... +..|...|.+++|+|+ +.+|++++.||.|++||+++++..
T Consensus 122 ~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~ 201 (416)
T 2pm9_A 122 NAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEV 201 (416)
T ss_dssp CSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEE
T ss_pred cCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcc
Confidence 998 8999999999999999999886 3332 4679999999999998 789999999999999999876520
Q ss_pred CcchhhhhHhhhhcCCceeEEEEeecccccccccCceeeEEEeeeecccccceeeeeeccceeEEEeecccceecccccc
Q psy18231 284 PIQVRCLNEALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTP 363 (540)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (540)
... .
T Consensus 202 ~~~----------------------------------------------------------------~------------ 205 (416)
T 2pm9_A 202 IHL----------------------------------------------------------------S------------ 205 (416)
T ss_dssp EEE----------------------------------------------------------------C------------
T ss_pred eEE----------------------------------------------------------------e------------
Confidence 000 0
Q ss_pred cccccchhhhhhcccccEEEEEecC---CeeEeeeCCC---eEEEEeCCCC-ceEEeee-C--CceEEEEEec-CCcEEE
Q psy18231 364 ISIHNSCFQALKEARDSITSVHVSD---HEILTASLDC---RIRRYDIRTG-NLVTDYV-G--EPIVDACFTR-DCQCIL 432 (540)
Q Consensus 364 ~~~~~~~~~~~~~~~~~v~~l~~~~---~~l~~~~~dg---~i~iwd~~~~-~~~~~~~-~--~~i~~~~~sp-~~~~l~ 432 (540)
......+|...|.+++|+| .++++++.|+ .|++||++++ +.+..+. + ..|.+++|+| ++++|+
T Consensus 206 ------~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~ 279 (416)
T 2pm9_A 206 ------YTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLL 279 (416)
T ss_dssp ------CCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEE
T ss_pred ------ccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCCCCeEE
Confidence 0001124478899999998 4799999998 9999999986 5555555 3 5799999999 999999
Q ss_pred eecCCCeEEEEeccccchhhhhccCcCCcceEEEEecCCC-CeEEEeeCCCcEEEEEecCCcceeEEE------------
Q psy18231 433 TCSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKD-SQIFCGSSDGKIYKWQLVDSSQISTLI------------ 499 (540)
Q Consensus 433 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~s~~~-~~l~s~s~dg~i~iwd~~~~~~~~~~~------------ 499 (540)
+++.|+.|++||+++++.+..+..|...+..+ +|+|++ .+|++++.||.|++||+.+.+......
T Consensus 280 s~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~--~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~ 357 (416)
T 2pm9_A 280 SSGRDNTVLLWNPESAEQLSQFPARGNWCFKT--KFAPEAPDLFACASFDNKIEVQTLQNLTNTLDEQETETKQQESETD 357 (416)
T ss_dssp EEESSSEEEEECSSSCCEEEEEECSSSCCCCE--EECTTCTTEEEECCSSSEEEEEESCCCCCSSCC-------------
T ss_pred EEeCCCCEEEeeCCCCccceeecCCCCceEEE--EECCCCCCEEEEEecCCcEEEEEccCCCCCcccccccccccCCccc
Confidence 99999999999999999999999999999988 899999 899999999999999998765433221
Q ss_pred ---ec------------------ccceeeeEEEEcCCCcEEEeec-CCeeEEEEcccc
Q psy18231 500 ---HS------------------VGKAVVNSLCSHPTRKHIMSAC-GNNVKLWTAEED 535 (540)
Q Consensus 500 ---~~------------------~~~~~v~~l~~s~d~~~l~s~~-d~~i~iw~~~~~ 535 (540)
.. .|..++.+++|+|||++|++++ |++|+||++.++
T Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~la~~~~d~~v~~w~~~~~ 415 (416)
T 2pm9_A 358 FWNNVSREESKEKPSVFHLQAPTWYGEPSPAAHWAFGGKLVQITPDGKGVSITNPKIS 415 (416)
T ss_dssp ---------CCSCCCSSCCCCCSTTCCCSCCCEEETTTEEECBCTTSSCBCCBCCCCC
T ss_pred ccccccccccccccccccccCCccccCCccceEEeeCCeEEEEeCCCCeEEEEEeccC
Confidence 00 1667888999999999999999 999999999864
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.4e-42 Score=328.78 Aligned_cols=295 Identities=18% Similarity=0.283 Sum_probs=259.2
Q ss_pred eeeeeecCeEEEEeCCCCCEEEEeeCCCcEEEEcCCCCeeEEEeecCCcceeEEEEeeCCCeEEEeeCCCeEEEEEcCCC
Q psy18231 159 RELFVLSGLMHTRFPVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTG 238 (540)
Q Consensus 159 ~~~~h~~~v~~v~~spdg~~lat~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~ 238 (540)
...+|.+.|++++|+|++++|++++.||.|++||+.+++.+..+.+|...|.+++|+|++++|++++.||.|++||+.++
T Consensus 27 ~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~ 106 (369)
T 3zwl_B 27 KLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNG 106 (369)
T ss_dssp EEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTC
T ss_pred EEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC
Confidence 35679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeEeccccCCceeEEEECCCCCEEEEecCC-----CcEEEEEecCCCCCCcchhhhhHhhhhcCCceeEEEEeeccccc
Q psy18231 239 QPVRRWREHASKVTCVKFNEDSSVVISGSQD-----NTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKN 313 (540)
Q Consensus 239 ~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (540)
+.+..+. |...|.+++|+|+++++++++.+ |.|++||+...........
T Consensus 107 ~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~------------------------- 160 (369)
T 3zwl_B 107 QCVATWK-SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTK------------------------- 160 (369)
T ss_dssp CEEEEEE-CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEE-------------------------
T ss_pred cEEEEee-cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecc-------------------------
Confidence 9998887 88999999999999999999998 9999999987753111100
Q ss_pred ccccCceeeEEEeeeecccccceeeeeeccceeEEEeecccceecccccccccccchhhhhhcccc--cEEEEEecC--C
Q psy18231 314 HLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEARD--SITSVHVSD--H 389 (540)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~v~~l~~~~--~ 389 (540)
........+..|.. .+.+++|+| +
T Consensus 161 ----------------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (369)
T 3zwl_B 161 ----------------------------------------------------VSEEPIHKIITHEGLDAATVAGWSTKGK 188 (369)
T ss_dssp ----------------------------------------------------ECSSCSEEEECCTTCCCEEEEEECGGGC
T ss_pred ----------------------------------------------------cccceeeeccCCcCccceeEEEEcCCCC
Confidence 00001112334444 899999998 7
Q ss_pred eeEeeeCCCeEEEEeCCC-CceEEeeeC--CceEEEEEecCCcEEEeecCCCeEEEEeccccchhhhhccCcCCcceEEE
Q psy18231 390 EILTASLDCRIRRYDIRT-GNLVTDYVG--EPIVDACFTRDCQCILTCSTDECLRLFDKATGELLEEYKGHKSGDFRIEC 466 (540)
Q Consensus 390 ~l~~~~~dg~i~iwd~~~-~~~~~~~~~--~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~ 466 (540)
.+++++.||.|++||+++ ++.+..+.. ..|.+++|+|++++|++++.|+.|++||+++++.+..+. +...+..+
T Consensus 189 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~-~~~~~~~~-- 265 (369)
T 3zwl_B 189 YIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYE-TDCPLNTA-- 265 (369)
T ss_dssp EEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE-CSSCEEEE--
T ss_pred EEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCCCceeeeec-CCCCceeE--
Confidence 899999999999999998 677777764 689999999999999999999999999999998888877 55666666
Q ss_pred EecCCCCeEEEeeCCC--------------cEEEEEecCCcceeEEEecccceeeeEEEEcCCCcEEEeec-CCeeEEEE
Q psy18231 467 CLDSKDSQIFCGSSDG--------------KIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC-GNNVKLWT 531 (540)
Q Consensus 467 ~~s~~~~~l~s~s~dg--------------~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~-d~~i~iw~ 531 (540)
+|+|+++++++++.++ .+++||+.+++.+..+. +|...|++++|+|++++|++++ ||.|++|+
T Consensus 266 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~--~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~ 343 (369)
T 3zwl_B 266 VITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQ--GHFGPLNTVAISPQGTSYASGGEDGFIRLHH 343 (369)
T ss_dssp EECSSSSEEEEEECCC-------------CEEEEEETTTCCEEEEEE--CCSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred EecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhhee--cccCcEEEEEECCCCCEEEEEcCCCeEEEEE
Confidence 8999999999999988 89999999999999998 8999999999999999999999 99999999
Q ss_pred ccccc
Q psy18231 532 AEEDY 536 (540)
Q Consensus 532 ~~~~~ 536 (540)
++++.
T Consensus 344 ~~~~~ 348 (369)
T 3zwl_B 344 FEKSY 348 (369)
T ss_dssp ECHHH
T ss_pred Ccccc
Confidence 98753
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-42 Score=327.70 Aligned_cols=286 Identities=20% Similarity=0.323 Sum_probs=247.0
Q ss_pred eeeeecCeEEEEeCCC-CCEEEEeeCCCcEEEEcCCCC-----eeEEEeecCCcceeEEEEeeCCCeEEEeeCCCeEEEE
Q psy18231 160 ELFVLSGLMHTRFPVD-GSYCLTCGSDKKIKLWNPYRN-----LLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILW 233 (540)
Q Consensus 160 ~~~h~~~v~~v~~spd-g~~lat~~~dg~i~iwd~~~~-----~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~dg~i~iw 233 (540)
..+|.+.|++|+|+|+ +++||||+.|++|+|||+.+. .+...+.+|...|.+++|+|++++|++++.|+.|++|
T Consensus 34 L~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~~i~~~ 113 (340)
T 4aow_A 34 LKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLW 113 (340)
T ss_dssp ECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred ECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEcccccceEE
Confidence 4579999999999997 689999999999999998764 3567889999999999999999999999999999999
Q ss_pred EcCCCceeEeccccCCceeEEEECCCCCEEEEecCCCcEEEEEecCCCCCCcchhhhhHhhhhcCCceeEEEEeeccccc
Q psy18231 234 EVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKN 313 (540)
Q Consensus 234 d~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (540)
+............+...+....+++++++|++++.|+.+++||+.....
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~------------------------------- 162 (340)
T 4aow_A 114 DLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCK------------------------------- 162 (340)
T ss_dssp ETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEE-------------------------------
T ss_pred eecccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCce-------------------------------
Confidence 9999988888888999999999999999999999999999999765431
Q ss_pred ccccCceeeEEEeeeecccccceeeeeeccceeEEEeecccceecccccccccccchhhhhhcccccEEEEEecC----C
Q psy18231 314 HLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEARDSITSVHVSD----H 389 (540)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~----~ 389 (540)
......+|...+..+++++ .
T Consensus 163 --------------------------------------------------------~~~~~~~~~~~v~~~~~~~~~~~~ 186 (340)
T 4aow_A 163 --------------------------------------------------------YTVQDESHSEWVSCVRFSPNSSNP 186 (340)
T ss_dssp --------------------------------------------------------EEECSSSCSSCEEEEEECSCSSSC
T ss_pred --------------------------------------------------------EEEEeccccCcccceEEccCCCCc
Confidence 0013456788889998876 5
Q ss_pred eeEeeeCCCeEEEEeCCCCceEEeeeC--CceEEEEEecCCcEEEeecCCCeEEEEeccccchhhhhccCcCCcceEEEE
Q psy18231 390 EILTASLDCRIRRYDIRTGNLVTDYVG--EPIVDACFTRDCQCILTCSTDECLRLFDKATGELLEEYKGHKSGDFRIECC 467 (540)
Q Consensus 390 ~l~~~~~dg~i~iwd~~~~~~~~~~~~--~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~ 467 (540)
.+++++.|+.|++||+++++.+..+.+ ..|++++|+|++++|++++.|+.|++||+++.+.+..+..+. .+..+ +
T Consensus 187 ~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~-~v~~~--~ 263 (340)
T 4aow_A 187 IIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGD-IINAL--C 263 (340)
T ss_dssp EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECSS-CEEEE--E
T ss_pred EEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeeecCCc-eEEee--e
Confidence 678999999999999999999888865 579999999999999999999999999999999888887654 56655 7
Q ss_pred ecCCCCeEEEeeCCCcEEEEEecCCcceeEEE-------ecccceeeeEEEEcCCCcEEEeec-CCeeEEEEccccc
Q psy18231 468 LDSKDSQIFCGSSDGKIYKWQLVDSSQISTLI-------HSVGKAVVNSLCSHPTRKHIMSAC-GNNVKLWTAEEDY 536 (540)
Q Consensus 468 ~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-------~~~~~~~v~~l~~s~d~~~l~s~~-d~~i~iw~~~~~~ 536 (540)
|+|++. +++++.|+.|++||++++..+..+. ...|...|++++|+||+++|++|+ ||.|+|||+++|.
T Consensus 264 ~~~~~~-~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~tGt 339 (340)
T 4aow_A 264 FSPNRY-WLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTIGT 339 (340)
T ss_dssp ECSSSS-EEEEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEEEEETTSCEEEEEEEC--
T ss_pred cCCCCc-eeeccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCCcC
Confidence 888765 5566779999999998877665553 126888999999999999999999 9999999999874
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-42 Score=325.77 Aligned_cols=279 Identities=13% Similarity=0.189 Sum_probs=247.1
Q ss_pred eeeeecCeEEEEeCCCCCEEEEeeCCCcEEEEcCCCCee---EEEee--cCCcceeEEEEeeCCCeEEEeeCCCeEEEEE
Q psy18231 160 ELFVLSGLMHTRFPVDGSYCLTCGSDKKIKLWNPYRNLL---LKTYG--GHAHEVNDATAACDSSQIASGASDKSVILWE 234 (540)
Q Consensus 160 ~~~h~~~v~~v~~spdg~~lat~~~dg~i~iwd~~~~~~---~~~~~--~h~~~v~~l~~sp~~~~l~s~s~dg~i~iwd 234 (540)
...|.+.|.+++|+|++++|++++ ||.|++||+.+++. +..+. +|...|.+++|+|++++|++++.|+.|++||
T Consensus 47 ~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d 125 (337)
T 1gxr_A 47 TLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWD 125 (337)
T ss_dssp EECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEE
T ss_pred eccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEE
Confidence 456999999999999999999999 99999999987643 33333 7999999999999999999999999999999
Q ss_pred cCCCc--eeEeccccCCceeEEEECCCCCEEEEecCCCcEEEEEecCCCCCCcchhhhhHhhhhcCCceeEEEEeecccc
Q psy18231 235 VTTGQ--PVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTK 312 (540)
Q Consensus 235 ~~~~~--~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (540)
+.+++ ....+..|...|.+++|+|+++++++++.||.|++||+++++.
T Consensus 126 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~------------------------------ 175 (337)
T 1gxr_A 126 LAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTL------------------------------ 175 (337)
T ss_dssp CCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEE------------------------------
T ss_pred CCCCCcceeeecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCce------------------------------
Confidence 99887 5667788999999999999999999999999999999987541
Q ss_pred cccccCceeeEEEeeeecccccceeeeeeccceeEEEeecccceecccccccccccchhhhhhcccccEEEEEecC--Ce
Q psy18231 313 NHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEARDSITSVHVSD--HE 390 (540)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~--~~ 390 (540)
...+..|...|.+++|+| +.
T Consensus 176 ----------------------------------------------------------~~~~~~~~~~i~~~~~~~~~~~ 197 (337)
T 1gxr_A 176 ----------------------------------------------------------VRQFQGHTDGASCIDISNDGTK 197 (337)
T ss_dssp ----------------------------------------------------------EEEECCCSSCEEEEEECTTSSE
T ss_pred ----------------------------------------------------------eeeeecccCceEEEEECCCCCE
Confidence 113456788999999998 78
Q ss_pred eEeeeCCCeEEEEeCCCCceEEeeeC-CceEEEEEecCCcEEEeecCCCeEEEEeccccchhhhhccCcCCcceEEEEec
Q psy18231 391 ILTASLDCRIRRYDIRTGNLVTDYVG-EPIVDACFTRDCQCILTCSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLD 469 (540)
Q Consensus 391 l~~~~~dg~i~iwd~~~~~~~~~~~~-~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~s 469 (540)
+++++.||.|++||+++++.+..+.. ..+.+++|+|+++++++++.|+.|++||+.+++. ..+..|...+..+ +|+
T Consensus 198 l~~~~~dg~i~~~d~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~-~~~~~~~~~v~~~--~~~ 274 (337)
T 1gxr_A 198 LWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDK-YQLHLHESCVLSL--KFA 274 (337)
T ss_dssp EEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCE-EEECCCSSCEEEE--EEC
T ss_pred EEEEecCCcEEEEECCCCceEeeecCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCCe-EEEcCCccceeEE--EEC
Confidence 99999999999999999988877764 6899999999999999999999999999988765 3567788888877 899
Q ss_pred CCCCeEEEeeCCCcEEEEEecCCcceeEEEecccceeeeEEEEcCCCcEEEeec-CCeeEEEEcc
Q psy18231 470 SKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC-GNNVKLWTAE 533 (540)
Q Consensus 470 ~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~-d~~i~iw~~~ 533 (540)
|++++|++++.||.|++||+.+++.+... .|...|.+++|+|++++|++++ ||.|++|++.
T Consensus 275 ~~~~~l~~~~~dg~i~~~~~~~~~~~~~~---~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~ 336 (337)
T 1gxr_A 275 YCGKWFVSTGKDNLLNAWRTPYGASIFQS---KESSSVLSCDISVDDKYIVTGSGDKKATVYEVI 336 (337)
T ss_dssp TTSSEEEEEETTSEEEEEETTTCCEEEEE---ECSSCEEEEEECTTSCEEEEEETTSCEEEEEEE
T ss_pred CCCCEEEEecCCCcEEEEECCCCeEEEEe---cCCCcEEEEEECCCCCEEEEecCCCeEEEEEEe
Confidence 99999999999999999999999888555 4888999999999999999999 9999999973
|
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-42 Score=327.10 Aligned_cols=244 Identities=17% Similarity=0.234 Sum_probs=207.1
Q ss_pred eeeecCeEEEEeCCCCCEEEEeeCCCcEEEEcCCCCeeEEE----eecCCcceeEEEEeeCCCeEEEeeCCCeEEEEEcC
Q psy18231 161 LFVLSGLMHTRFPVDGSYCLTCGSDKKIKLWNPYRNLLLKT----YGGHAHEVNDATAACDSSQIASGASDKSVILWEVT 236 (540)
Q Consensus 161 ~~h~~~v~~v~~spdg~~lat~~~dg~i~iwd~~~~~~~~~----~~~h~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~ 236 (540)
..|...|.+++|+||+ .|++|+.||+|+|||+.+++.+.. +.+|.+.|++++|+|++++|++|+.|++|++||++
T Consensus 79 ~~~~~~v~~~~~s~d~-~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~ 157 (344)
T 4gqb_B 79 VQTEAGVADLTWVGER-GILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLA 157 (344)
T ss_dssp EEESSCEEEEEEETTT-EEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred eccCCCEEEEEEeCCC-eEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECC
Confidence 4577889999999996 678999999999999998865443 45899999999999999999999999999999999
Q ss_pred CCceeEeccccCCceeEEEECCCC-CEEEEecCCCcEEEEEecCCCCCCcchhhhhHhhhhcCCceeEEEEeeccccccc
Q psy18231 237 TGQPVRRWREHASKVTCVKFNEDS-SVVISGSQDNTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHL 315 (540)
Q Consensus 237 ~~~~~~~~~~h~~~v~~~~~~~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (540)
+++++..+.+|.+.|.+++|++++ .+|++++.||+|++||+++++.....
T Consensus 158 ~~~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~----------------------------- 208 (344)
T 4gqb_B 158 QQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQI----------------------------- 208 (344)
T ss_dssp TTEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEEC-----------------------------
T ss_pred CCcEEEEEcCcCCceEEEEecCCCCCceeeeccccccccccccccceeeee-----------------------------
Confidence 999999999999999999999987 47899999999999999887621100
Q ss_pred ccCceeeEEEeeeecccccceeeeeeccceeEEEeecccceecccccccccccchhhhhhcccccEEEEEecC---CeeE
Q psy18231 316 SNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEARDSITSVHVSD---HEIL 392 (540)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~---~~l~ 392 (540)
....+...+.+++|+| .+++
T Consensus 209 ---------------------------------------------------------~~~~~~~~~~~~~~~p~~~~~l~ 231 (344)
T 4gqb_B 209 ---------------------------------------------------------GCSAPGYLPTSLAWHPQQSEVFV 231 (344)
T ss_dssp ---------------------------------------------------------C----CCCEEEEEECSSCTTEEE
T ss_pred ---------------------------------------------------------ecceeeccceeeeecCCCCcceE
Confidence 1234456788999987 5788
Q ss_pred eeeCCCeEEEEeCCCCceEEeeeC--CceEEEEEecCC-cEEEeecCCCeEEEEeccccchhhhhccCcCCcceEEEEec
Q psy18231 393 TASLDCRIRRYDIRTGNLVTDYVG--EPIVDACFTRDC-QCILTCSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLD 469 (540)
Q Consensus 393 ~~~~dg~i~iwd~~~~~~~~~~~~--~~i~~~~~sp~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~s 469 (540)
+|+.||.|++||+++++++..+.+ ..|++++|+|++ ++|++|+.|++|+|||+.+++.+ .+.+|...|+++ +|+
T Consensus 232 sg~~dg~v~~wd~~~~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~-~~~~H~~~V~~v--~~s 308 (344)
T 4gqb_B 232 FGDENGTVSLVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELF-RSQAHRDFVRDA--TWS 308 (344)
T ss_dssp EEETTSEEEEEESCC--CCEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEE-EECCCSSCEEEE--EEC
T ss_pred EeccCCcEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEE-EEcCCCCCEEEE--EEe
Confidence 999999999999999999888876 579999999998 57999999999999999988765 578999999888 899
Q ss_pred CCCCe-EEEeeCCCcEEEEEecCCcc
Q psy18231 470 SKDSQ-IFCGSSDGKIYKWQLVDSSQ 494 (540)
Q Consensus 470 ~~~~~-l~s~s~dg~i~iwd~~~~~~ 494 (540)
|+++. |++++.||+|++|++.+...
T Consensus 309 p~~~~llas~s~D~~v~~w~v~~~~~ 334 (344)
T 4gqb_B 309 PLNHSLLTTVGWDHQVVHHVVPTEPL 334 (344)
T ss_dssp SSSTTEEEEEETTSCEEEEECCC---
T ss_pred CCCCeEEEEEcCCCeEEEEECCCCCC
Confidence 99875 77999999999999876543
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-42 Score=366.19 Aligned_cols=399 Identities=10% Similarity=0.048 Sum_probs=276.6
Q ss_pred Ccceeccccchhhhhhcccccceeeeecccccce--eeeeecCeEEEEeCCCCCEEEEeeCCCcEEEEcCCCCeeE----
Q psy18231 126 HPLLFSLPRTITRILYELPKEWSIRVYRPLTVNR--ELFVLSGLMHTRFPVDGSYCLTCGSDKKIKLWNPYRNLLL---- 199 (540)
Q Consensus 126 ~~~~~s~~~~~~~~~~~~~~~~~i~~~~~~~~~~--~~~h~~~v~~v~~spdg~~lat~~~dg~i~iwd~~~~~~~---- 199 (540)
..+.|++ ...+++++.+++|++|+..+... ...|.+.|++++|+|++++|++|+.||+|++||+.+++..
T Consensus 62 ~~l~fsp----g~~L~S~s~D~~v~lWd~~~~~~~~~~~~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i 137 (902)
T 2oaj_A 62 KEMRFVK----GIYLVVINAKDTVYVLSLYSQKVLTTVFVPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKL 137 (902)
T ss_dssp EEEEEET----TTEEEEEETTCEEEEEETTTCSEEEEEECSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEE
T ss_pred EEEEEcC----CCEEEEEECcCeEEEEECCCCcEEEEEcCCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCcccccee
Confidence 3455565 23677889999999999877543 3457789999999999999999999999999999988764
Q ss_pred -------EEeecCCcceeEEEEeeC-CCeEEEeeCCCeEEEEEcCCCceeEecccc------------------CCceeE
Q psy18231 200 -------KTYGGHAHEVNDATAACD-SSQIASGASDKSVILWEVTTGQPVRRWREH------------------ASKVTC 253 (540)
Q Consensus 200 -------~~~~~h~~~v~~l~~sp~-~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h------------------~~~v~~ 253 (540)
..+.+|.+.|++++|+|+ +..|++|+.||+| +||+++++.+..+..| ...|.+
T Consensus 138 ~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~ 216 (902)
T 2oaj_A 138 DNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQ 216 (902)
T ss_dssp CCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEE
T ss_pred ccccccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEE
Confidence 234679999999999995 5789999999999 9999999988877655 578999
Q ss_pred EEECCCCCEEEEecCCCcEEEEEecCCCCCCcchh---hhhHhh----h---hcCCceeEEEEeec-ccc--cccccCce
Q psy18231 254 VKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQVR---CLNEAL----K---EARDSITSVHSLVK-STK--NHLSNGLL 320 (540)
Q Consensus 254 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~---~~~~~~----~---~~~~~~~~~~~~~~-~~~--~~~~~~~~ 320 (540)
++|+|+|++|++++.||+|++||+++++....... ...... . .....+..+..... .++ ..+..+..
T Consensus 217 v~fspdg~~lasgs~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~ 296 (902)
T 2oaj_A 217 SLYHPNSLHIITIHEDNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKS 296 (902)
T ss_dssp EEECTTSSEEEEEETTCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEEC
T ss_pred EEEcCCCCEEEEEECCCeEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCC
Confidence 99999999999999999999999988763211000 000000 0 01112233322211 111 11111100
Q ss_pred e-----eEEEeeeec------------------------cc----ccce--------------------eeeeeccceeE
Q psy18231 321 T-----KLVFAFRCK------------------------YL----NGLL--------------------SGVLMSTQHLM 347 (540)
Q Consensus 321 ~-----~~~~~~~~~------------------------~~----~~~~--------------------~~~~~~~~~~~ 347 (540)
. ..+..+... .. ...+ ..+....++.+
T Consensus 297 ~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l 376 (902)
T 2oaj_A 297 ISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEI 376 (902)
T ss_dssp STTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCE
T ss_pred CCCCCCceEEEEecCCCCCccccchhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcE
Confidence 0 011111100 00 0000 11222334556
Q ss_pred EEeecccceecccc----ccc----------cc--------------ccchhhhhhcccccEEEEEecC--CeeEeeeCC
Q psy18231 348 VLLDFLGSTQIGDV----TPI----------SI--------------HNSCFQALKEARDSITSVHVSD--HEILTASLD 397 (540)
Q Consensus 348 ~~~~~~~~~~~~~~----~~~----------~~--------------~~~~~~~~~~~~~~v~~l~~~~--~~l~~~~~d 397 (540)
.+|+.......... ... .. .......+.+|...+.+++|+| +.+++|+.|
T Consensus 377 ~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~laSgs~D 456 (902)
T 2oaj_A 377 ETMLYPSGIFTDKASLFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFITGHSN 456 (902)
T ss_dssp EEEETTTCCEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEEEETT
T ss_pred EEEECCCCCcccccccCCCcccccCCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccCcEEEEecCC
Confidence 66654221100000 000 00 0011123456666677777888 789999999
Q ss_pred CeEEEEeCCCCceE----Ee---------eeCCceEEEEEecCCcEEEeecCCCeEEEEeccccc---------------
Q psy18231 398 CRIRRYDIRTGNLV----TD---------YVGEPIVDACFTRDCQCILTCSTDECLRLFDKATGE--------------- 449 (540)
Q Consensus 398 g~i~iwd~~~~~~~----~~---------~~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~--------------- 449 (540)
++|++||+.++... .. -+...|.+++|+|++++||+|+.||+|+|||+.+++
T Consensus 457 gtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~ 536 (902)
T 2oaj_A 457 GSVRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKISFAAETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEM 536 (902)
T ss_dssp SEEEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEETTTTEEEEEETTSCEEEEEEEECCC--------------
T ss_pred CcEEEEECCCccccCCceEEeechhhcCCCCCCceeEEEecCCCCeEEEEecCcEEEEEEecCccccCccccCCCcccce
Confidence 99999999887431 11 123579999999999999999999999999998763
Q ss_pred ------------------------------hhhhhccCcCCcceEEEEecCCCCeEEEeeCCCcEEEEEecCCcceeEEE
Q psy18231 450 ------------------------------LLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLI 499 (540)
Q Consensus 450 ------------------------------~~~~~~~~~~~v~~~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~ 499 (540)
++..+.+|.+.|+++ +||||| +||+|+.|++|++||++++..+....
T Consensus 537 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~sv--afSpdG-~lAsgs~D~tv~lwd~~~~~~~~~~~ 613 (902)
T 2oaj_A 537 NFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAI--NNSNIG-FVGIAYAAGSLMLIDRRGPAIIYMEN 613 (902)
T ss_dssp -CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEE--EECBTS-EEEEEETTSEEEEEETTTTEEEEEEE
T ss_pred eeeeccccCCccccccccccCCCCCCCccceeEEEEcCCCcEEEE--EecCCc-EEEEEeCCCcEEEEECCCCeEEEEee
Confidence 356678899999988 899999 99999999999999988776654322
Q ss_pred e----cccceeeeEEEEc-----CCC---cEEEeec-CCeeEEEEc
Q psy18231 500 H----SVGKAVVNSLCSH-----PTR---KHIMSAC-GNNVKLWTA 532 (540)
Q Consensus 500 ~----~~~~~~v~~l~~s-----~d~---~~l~s~~-d~~i~iw~~ 532 (540)
. .+|.+.|++++|+ ||| ++|++++ |++|++|++
T Consensus 614 ~~~~~~gh~~~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D~tv~~wd~ 659 (902)
T 2oaj_A 614 IREISGAQSACVTCIEFVIMEYGDDGYSSILMVCGTDMGEVITYKI 659 (902)
T ss_dssp GGGTCSSCCCCEEEEEEEEEECTTSSSEEEEEEEEETTSEEEEEEE
T ss_pred hhHhccccccceEEEEEEEEecCCCCCcceEEEEEecCCcEEEEEE
Confidence 1 1788999999999 885 8999999 999999998
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.9e-42 Score=352.83 Aligned_cols=375 Identities=12% Similarity=0.112 Sum_probs=278.0
Q ss_pred ceeeeecccccc-eeeeeecCeEEEEeCCCCC-EEEEeeCCCcEEEEcCCCCeeEEEeecCCc---ceeEEEEeeC-CCe
Q psy18231 147 WSIRVYRPLTVN-RELFVLSGLMHTRFPVDGS-YCLTCGSDKKIKLWNPYRNLLLKTYGGHAH---EVNDATAACD-SSQ 220 (540)
Q Consensus 147 ~~i~~~~~~~~~-~~~~h~~~v~~v~~spdg~-~lat~~~dg~i~iwd~~~~~~~~~~~~h~~---~v~~l~~sp~-~~~ 220 (540)
..|++|+..... ....|.+.|.+++|+|+++ +|++++.|+.|++||+.+++.+..+.+|.. .|.+++|+|+ +++
T Consensus 142 ~~v~~~d~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 221 (615)
T 1pgu_A 142 GVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEF 221 (615)
T ss_dssp EEEEETTTCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCE
T ss_pred cEEEEEECCCcceeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCE
Confidence 689999954432 3356999999999999998 799999999999999999999999999999 9999999999 999
Q ss_pred EEEeeCCCeEEEEEcCCCceeEec-c---ccCCceeEEEECCCCCEEEEecCCCcEEEEEecCCCCCCcchhhhhHhhhh
Q psy18231 221 IASGASDKSVILWEVTTGQPVRRW-R---EHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQVRCLNEALKE 296 (540)
Q Consensus 221 l~s~s~dg~i~iwd~~~~~~~~~~-~---~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 296 (540)
|++++.||.|++||+.+++.+..+ . .|...|.+++|+ ++++|++++.||.|++||+++++......... ..
T Consensus 222 l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~----~~ 296 (615)
T 1pgu_A 222 VITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTLDK----QQ 296 (615)
T ss_dssp EEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEECCT----TC
T ss_pred EEEEeCCCeEEEEECCCCCEeEEecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCC----Cc
Confidence 999999999999999999999998 6 899999999999 99999999999999999998765311110000 00
Q ss_pred cCCceeEE--------------------------------------EEeecccccccccCceeeEEEeeee----ccccc
Q psy18231 297 ARDSITSV--------------------------------------HSLVKSTKNHLSNGLLTKLVFAFRC----KYLNG 334 (540)
Q Consensus 297 ~~~~~~~~--------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~ 334 (540)
.......+ ..+.+ +. +..+.....+..|+. .....
T Consensus 297 ~~~~~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~-~~--l~~~~~dg~i~~w~~~~~~~~~~~ 373 (615)
T 1pgu_A 297 LGNQQVGVVATGNGRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTV-NP--LISGSYDGRIMEWSSSSMHQDHSN 373 (615)
T ss_dssp GGGCEEEEEEEETTEEEEEETTSCEEEEETTEEEEEEEECCCSSCEEEEET-TT--TEEEETTSCEEETTTTEEECCCCS
T ss_pred ccCceeEEEeCCCCeEEEEECCCCEEEEECCCCcEEEEEeCCCCCEEEEEe-cC--cEEECCCCeEEEEEchhhcCcccC
Confidence 00000000 00111 00 111111111111110 01111
Q ss_pred ceeeeeeccceeEEEeecccceeccccccccc------------------------------ccchhhhhhcccccEEEE
Q psy18231 335 LLSGVLMSTQHLMVLLDFLGSTQIGDVTPISI------------------------------HNSCFQALKEARDSITSV 384 (540)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------~~~~~~~~~~~~~~v~~l 384 (540)
.+..+....+..+......+...+|++..... ....+..+ .+...+.++
T Consensus 374 ~v~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 452 (615)
T 1pgu_A 374 LIVSLDNSKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSV-RLNSPGSAV 452 (615)
T ss_dssp CEEEEECCSTTCCEEEETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEE-ECSSCEEEE
T ss_pred ceEEEEECCCcEEEEEeCCCCEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeec-ccCCCceEE
Confidence 12222222222333333333333333322110 11111112 367889999
Q ss_pred EecCCeeEeeeC-CCeEEEEeCCCCceE-Eeee--CCceEEEEEecCCcEEEeecCCCeEEEEeccccchhhhhcc-CcC
Q psy18231 385 HVSDHEILTASL-DCRIRRYDIRTGNLV-TDYV--GEPIVDACFTRDCQCILTCSTDECLRLFDKATGELLEEYKG-HKS 459 (540)
Q Consensus 385 ~~~~~~l~~~~~-dg~i~iwd~~~~~~~-~~~~--~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~ 459 (540)
+++.+++++++. |+.|++||+.+++.. ..+. ...|.+++|+|++++|++++.||.|++||+.+++.+..+.+ |..
T Consensus 453 ~~~~~~l~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~ 532 (615)
T 1pgu_A 453 SLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTS 532 (615)
T ss_dssp EECSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSS
T ss_pred EEcCCEEEEeecCCCeEEEEECCCccccccccCCccCceEEEEECCCCCEEEEcCCCCeEEEeeCCCCcceeEeecCCCC
Confidence 999999999999 999999999987765 3443 35899999999999999999999999999999999999988 999
Q ss_pred CcceEEEEecC----------CCCeEEEeeCCCcEEEEEecCC-cceeEEEecccceeeeEEEEcCCCcEEEeec-CCee
Q psy18231 460 GDFRIECCLDS----------KDSQIFCGSSDGKIYKWQLVDS-SQISTLIHSVGKAVVNSLCSHPTRKHIMSAC-GNNV 527 (540)
Q Consensus 460 ~v~~~~~~~s~----------~~~~l~s~s~dg~i~iwd~~~~-~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~-d~~i 527 (540)
.+..+ +|+| ++++|++++.||.|++||+.++ +++..+. +|...|++++|+|+++ |++++ |+.|
T Consensus 533 ~v~~~--~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~--~h~~~v~~l~~s~~~~-l~s~~~d~~v 607 (615)
T 1pgu_A 533 KINAI--SWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALN--AHKDGVNNLLWETPST-LVSSGADACI 607 (615)
T ss_dssp CEEEE--EECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETT--SSTTCEEEEEEEETTE-EEEEETTSCE
T ss_pred ceeEE--EEcCccccccccccCCCEEEEEcCCCcEEEEECCCCceechhhh--cCccceEEEEEcCCCC-eEEecCCceE
Confidence 99888 8999 9999999999999999999998 6777776 8999999999999999 99999 9999
Q ss_pred EEEEcccc
Q psy18231 528 KLWTAEED 535 (540)
Q Consensus 528 ~iw~~~~~ 535 (540)
++|+++.+
T Consensus 608 ~iw~~~~~ 615 (615)
T 1pgu_A 608 KRWNVVLE 615 (615)
T ss_dssp EEEEEC--
T ss_pred EEEeeecC
Confidence 99999753
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=6e-42 Score=324.92 Aligned_cols=267 Identities=19% Similarity=0.325 Sum_probs=238.2
Q ss_pred ceeccccchhhhhhcccccceeeeecccccce---eeeeecCeEEEEeCCCCCEEEEeeCCCcEEEEcCCCC----eeEE
Q psy18231 128 LLFSLPRTITRILYELPKEWSIRVYRPLTVNR---ELFVLSGLMHTRFPVDGSYCLTCGSDKKIKLWNPYRN----LLLK 200 (540)
Q Consensus 128 ~~~s~~~~~~~~~~~~~~~~~i~~~~~~~~~~---~~~h~~~v~~v~~spdg~~lat~~~dg~i~iwd~~~~----~~~~ 200 (540)
+.|+++ ...+++++.|++|++|+..+... ...|...|.+++|+|++++|++|+.|+.|++||+.++ ....
T Consensus 61 ~~~s~d---~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~ 137 (340)
T 1got_B 61 MHWGTD---SRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSR 137 (340)
T ss_dssp EEECTT---SSEEEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEEEETTTCSBSCEEEE
T ss_pred EEECCC---CCEEEEEeCCCcEEEEECCCCCcceEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEECccCCCcceeEE
Confidence 444544 34667889999999999877543 3458889999999999999999999999999998765 4567
Q ss_pred EeecCCcceeEEEEeeCCCeEEEeeCCCeEEEEEcCCCceeEeccccCCceeEEEECCCCCEEEEecCCCcEEEEEecCC
Q psy18231 201 TYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSR 280 (540)
Q Consensus 201 ~~~~h~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~ 280 (540)
.+.+|.+.|.++.|++++. +++++.|++|++||+++++.+..+.+|.+.|.+++|+|+++++++|+.||+|++||++++
T Consensus 138 ~~~~h~~~v~~~~~~~~~~-l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~ 216 (340)
T 1got_B 138 ELAGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREG 216 (340)
T ss_dssp EEECCSSCEEEEEEEETTE-EEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTC
T ss_pred EecCCCccEEEEEECCCCc-EEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCC
Confidence 7889999999999998875 899999999999999999999999999999999999999999999999999999999876
Q ss_pred CCCCcchhhhhHhhhhcCCceeEEEEeecccccccccCceeeEEEeeeecccccceeeeeeccceeEEEeecccceeccc
Q psy18231 281 SHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGD 360 (540)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (540)
..
T Consensus 217 ~~------------------------------------------------------------------------------ 218 (340)
T 1got_B 217 MC------------------------------------------------------------------------------ 218 (340)
T ss_dssp SE------------------------------------------------------------------------------
T ss_pred ee------------------------------------------------------------------------------
Confidence 51
Q ss_pred ccccccccchhhhhhcccccEEEEEecC--CeeEeeeCCCeEEEEeCCCCceEEeeeC----CceEEEEEecCCcEEEee
Q psy18231 361 VTPISIHNSCFQALKEARDSITSVHVSD--HEILTASLDCRIRRYDIRTGNLVTDYVG----EPIVDACFTRDCQCILTC 434 (540)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~v~~l~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~----~~i~~~~~sp~~~~l~~~ 434 (540)
...+.+|...|.+++|+| +.+++++.||.|++||+++++.+..+.. ..|.+++|+|+|++|++|
T Consensus 219 ----------~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g 288 (340)
T 1got_B 219 ----------RQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAG 288 (340)
T ss_dssp ----------EEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEE
T ss_pred ----------EEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEEEEECCCCCEEEEE
Confidence 114567889999999998 8899999999999999999988777653 369999999999999999
Q ss_pred cCCCeEEEEeccccchhhhhccCcCCcceEEEEecCCCCeEEEeeCCCcEEEEE
Q psy18231 435 STDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQ 488 (540)
Q Consensus 435 ~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~s~~~~~l~s~s~dg~i~iwd 488 (540)
+.|+.|++||+.+++.+..+.+|...|.++ +|+|+|.+|++|+.||+|++||
T Consensus 289 ~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~--~~s~dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 289 YDDFNCNVWDALKADRAGVLAGHDNRVSCL--GVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp ETTSEEEEEETTTCCEEEEEECCSSCEEEE--EECTTSSCEEEEETTSCEEEEC
T ss_pred CCCCeEEEEEcccCcEeeEeecCCCcEEEE--EEcCCCCEEEEEcCCccEEecC
Confidence 999999999999999999999999999888 8999999999999999999996
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-41 Score=353.46 Aligned_cols=286 Identities=21% Similarity=0.337 Sum_probs=243.9
Q ss_pred eeeeecCeEEEEeCCCC-CEEEEeeCCCcEEEEcCCCC-----eeEEEeecCCcceeEEEEeeCCCeEEEeeCCCeEEEE
Q psy18231 160 ELFVLSGLMHTRFPVDG-SYCLTCGSDKKIKLWNPYRN-----LLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILW 233 (540)
Q Consensus 160 ~~~h~~~v~~v~~spdg-~~lat~~~dg~i~iwd~~~~-----~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~dg~i~iw 233 (540)
..+|.+.|++++|+|++ ++|++|+.|++|++||+.+. .....+.+|...|.+++|+|++++|++|+.||+|+||
T Consensus 378 l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vw 457 (694)
T 3dm0_A 378 MRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLW 457 (694)
T ss_dssp EECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred cccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCCCcEEEE
Confidence 45799999999999864 79999999999999998753 4567889999999999999999999999999999999
Q ss_pred EcCCCceeEeccccCCceeEEEECCCCCEEEEecCCCcEEEEEecCCCCCCcchhhhhHhhhhcCCceeEEEEeeccccc
Q psy18231 234 EVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKN 313 (540)
Q Consensus 234 d~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (540)
|+.+++.+..+.+|...|.+++|+|++++|++++.|++|++||+.......
T Consensus 458 d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~----------------------------- 508 (694)
T 3dm0_A 458 DLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYT----------------------------- 508 (694)
T ss_dssp ETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEE-----------------------------
T ss_pred ECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCccee-----------------------------
Confidence 999999999999999999999999999999999999999999975432100
Q ss_pred ccccCceeeEEEeeeecccccceeeeeeccceeEEEeecccceecccccccccccchhhhhhcccccEEEEEecC----C
Q psy18231 314 HLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEARDSITSVHVSD----H 389 (540)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~----~ 389 (540)
......+|...|.+++|+| .
T Consensus 509 --------------------------------------------------------~~~~~~~h~~~v~~~~~~~~~~~~ 532 (694)
T 3dm0_A 509 --------------------------------------------------------ISEGGEGHRDWVSCVRFSPNTLQP 532 (694)
T ss_dssp --------------------------------------------------------ECSSTTSCSSCEEEEEECSCSSSC
T ss_pred --------------------------------------------------------eccCCCCCCCcEEEEEEeCCCCcc
Confidence 0012346888999999998 3
Q ss_pred eeEeeeCCCeEEEEeCCCCceEEeeeC--CceEEEEEecCCcEEEeecCCCeEEEEeccccchhhhhccCcCCcceEEEE
Q psy18231 390 EILTASLDCRIRRYDIRTGNLVTDYVG--EPIVDACFTRDCQCILTCSTDECLRLFDKATGELLEEYKGHKSGDFRIECC 467 (540)
Q Consensus 390 ~l~~~~~dg~i~iwd~~~~~~~~~~~~--~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~ 467 (540)
.+++++.|+.|++||+++++....+.+ ..|++++|+|++++|++++.||.|++||+.+++.+..+..+ ..+..+ +
T Consensus 533 ~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~-~~v~~~--~ 609 (694)
T 3dm0_A 533 TIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEAN-SVIHAL--C 609 (694)
T ss_dssp EEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEECCBCS-SCEEEE--E
T ss_pred eEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEecCC-CcEEEE--E
Confidence 699999999999999999998888865 57999999999999999999999999999999988877654 456665 8
Q ss_pred ecCCCCeEEEeeCCCcEEEEEecCCcceeEEEec-----------------ccceeeeEEEEcCCCcEEEeec-CCeeEE
Q psy18231 468 LDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHS-----------------VGKAVVNSLCSHPTRKHIMSAC-GNNVKL 529 (540)
Q Consensus 468 ~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~-----------------~~~~~v~~l~~s~d~~~l~s~~-d~~i~i 529 (540)
|+|++.+|++++ |+.|++||+.+++.+..+... .+...+++++|+|||++|++|+ ||+|++
T Consensus 610 ~sp~~~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg~i~i 688 (694)
T 3dm0_A 610 FSPNRYWLCAAT-EHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDGVIRV 688 (694)
T ss_dssp ECSSSSEEEEEE-TTEEEEEETTTTEEEEEECCCCC----------------CCCCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred EcCCCcEEEEEc-CCCEEEEECCCCCChhhhccccccccccccccccccCCceeEEeeeEEEcCCCCEEEEEcCCCeEEE
Confidence 999988877765 566999999999887766411 0112378999999999999999 999999
Q ss_pred EEccc
Q psy18231 530 WTAEE 534 (540)
Q Consensus 530 w~~~~ 534 (540)
|++..
T Consensus 689 W~i~~ 693 (694)
T 3dm0_A 689 WGIGR 693 (694)
T ss_dssp EEC--
T ss_pred EeccC
Confidence 99853
|
| >2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-41 Score=317.98 Aligned_cols=249 Identities=18% Similarity=0.229 Sum_probs=221.2
Q ss_pred eeEEEeecCCcceeEEEEeeCCCeEEEeeCCCeEEEEEcCCCceeEeccccCCceeEEEECCCCCEEEEecCCCcEEEEE
Q psy18231 197 LLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWD 276 (540)
Q Consensus 197 ~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd 276 (540)
+..+++.+|.+.|++++|+|++++|++++.||+|++||+++++.+..+..|..+|.+++|+|++++|++|+.|++|++||
T Consensus 4 ~~~~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd 83 (304)
T 2ynn_A 4 DIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFN 83 (304)
T ss_dssp CCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEE
T ss_pred eeEEeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEE
Confidence 45678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCCcchhhhhHhhhhcCCceeEEEEeecccccccccCceeeEEEeeeecccccceeeeeeccceeEEEeecccce
Q psy18231 277 VKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGST 356 (540)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (540)
+.+++.
T Consensus 84 ~~~~~~-------------------------------------------------------------------------- 89 (304)
T 2ynn_A 84 YNTGEK-------------------------------------------------------------------------- 89 (304)
T ss_dssp TTTCCE--------------------------------------------------------------------------
T ss_pred CCCCcE--------------------------------------------------------------------------
Confidence 987751
Q ss_pred ecccccccccccchhhhhhcccccEEEEEecC--CeeEeeeCCCeEEEEeCCCCce-EEeeeC--CceEEEEEec-CCcE
Q psy18231 357 QIGDVTPISIHNSCFQALKEARDSITSVHVSD--HEILTASLDCRIRRYDIRTGNL-VTDYVG--EPIVDACFTR-DCQC 430 (540)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~--~~l~~~~~dg~i~iwd~~~~~~-~~~~~~--~~i~~~~~sp-~~~~ 430 (540)
+..+.+|...|.+++|+| .++++++.|++|++||++++.. ...+.+ ..|.+++|+| ++.+
T Consensus 90 --------------~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~ 155 (304)
T 2ynn_A 90 --------------VVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPST 155 (304)
T ss_dssp --------------EEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTE
T ss_pred --------------EEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCE
Confidence 125567999999999999 7899999999999999998744 445544 5799999999 6789
Q ss_pred EEeecCCCeEEEEeccccchhhhhc-cCcCCcceEEEEecCCCCeEEEeeCCCcEEEEEecCCcceeEEEecccceeeeE
Q psy18231 431 ILTCSTDECLRLFDKATGELLEEYK-GHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNS 509 (540)
Q Consensus 431 l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~v~~~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~ 509 (540)
|++|+.|++|++||+.++.....+. +|...+..+.+...+++.+|++|+.|++|++||+++++++..+. +|...|.+
T Consensus 156 l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~--~h~~~v~~ 233 (304)
T 2ynn_A 156 FASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLE--GHMSNVSF 233 (304)
T ss_dssp EEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEE--CCSSCEEE
T ss_pred EEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeC--CCCCCEEE
Confidence 9999999999999998877665554 45566777744445688899999999999999999999999998 99999999
Q ss_pred EEEcCCCcEEEeec-CCeeEEEEcccc
Q psy18231 510 LCSHPTRKHIMSAC-GNNVKLWTAEED 535 (540)
Q Consensus 510 l~~s~d~~~l~s~~-d~~i~iw~~~~~ 535 (540)
++|+|++++|++++ ||+|++||+.++
T Consensus 234 ~~~~p~~~~l~s~s~Dg~i~iWd~~~~ 260 (304)
T 2ynn_A 234 AVFHPTLPIIISGSEDGTLKIWNSSTY 260 (304)
T ss_dssp EEECSSSSEEEEEETTSCEEEEETTTC
T ss_pred EEECCCCCEEEEEcCCCeEEEEECCCC
Confidence 99999999999999 999999998764
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-41 Score=328.12 Aligned_cols=284 Identities=12% Similarity=0.164 Sum_probs=240.9
Q ss_pred eeeeeecCeEEEEeCCCC-CEEEEeeCCCcEEEEcCCCCeeEEEee--cCCcceeEEEEee-CCCeEEEeeCCCeEEEEE
Q psy18231 159 RELFVLSGLMHTRFPVDG-SYCLTCGSDKKIKLWNPYRNLLLKTYG--GHAHEVNDATAAC-DSSQIASGASDKSVILWE 234 (540)
Q Consensus 159 ~~~~h~~~v~~v~~spdg-~~lat~~~dg~i~iwd~~~~~~~~~~~--~h~~~v~~l~~sp-~~~~l~s~s~dg~i~iwd 234 (540)
...+|.+.|++++|+|++ ++|++|+.||.|++||+.+++....+. +|...|.+++|+| ++++|++++.|+.|++||
T Consensus 68 ~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd 147 (383)
T 3ei3_B 68 TASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGATTLRD 147 (383)
T ss_dssp EECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTEEEEEE
T ss_pred eccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEE
Confidence 345789999999999999 999999999999999999888777765 6999999999999 789999999999999999
Q ss_pred cCCCceeEeccc---cCCceeEEEECCCCCEEEEecCCCcEEEEEecCCCCCCcchhhhhHhhhhcCCceeEEEEeeccc
Q psy18231 235 VTTGQPVRRWRE---HASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKST 311 (540)
Q Consensus 235 ~~~~~~~~~~~~---h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (540)
++. +.+..+.. |...|.+++|+|++++|++++.||.|++||++ ++ .
T Consensus 148 ~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~-~~--~--------------------------- 196 (383)
T 3ei3_B 148 FSG-SVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLD-GH--E--------------------------- 196 (383)
T ss_dssp TTS-CEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEETT-SC--E---------------------------
T ss_pred CCC-CceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEECC-CC--E---------------------------
Confidence 985 55555543 45889999999999999999999999999984 22 1
Q ss_pred ccccccCceeeEEEeeeecccccceeeeeeccceeEEEeecccceecccccccccccchhhhhhcccccEEEEEecC--C
Q psy18231 312 KNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEARDSITSVHVSD--H 389 (540)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~--~ 389 (540)
+..+..|...|.+++|+| .
T Consensus 197 -----------------------------------------------------------~~~~~~h~~~v~~~~~~~~~~ 217 (383)
T 3ei3_B 197 -----------------------------------------------------------IFKEKLHKAKVTHAEFNPRCD 217 (383)
T ss_dssp -----------------------------------------------------------EEEEECSSSCEEEEEECSSCT
T ss_pred -----------------------------------------------------------EEEeccCCCcEEEEEECCCCC
Confidence 114557889999999999 4
Q ss_pred -eeEeeeCCCeEEEEeCCC----CceEEeee-CCceEEEEEec-CCcEEEeecCCCeEEEEeccccchhhhhccCcCC--
Q psy18231 390 -EILTASLDCRIRRYDIRT----GNLVTDYV-GEPIVDACFTR-DCQCILTCSTDECLRLFDKATGELLEEYKGHKSG-- 460 (540)
Q Consensus 390 -~l~~~~~dg~i~iwd~~~----~~~~~~~~-~~~i~~~~~sp-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~-- 460 (540)
++++++.|+.|++||+++ +..+..+. ...|.+++|+| ++++|++++.|+.|++||+++++.+..+..|...
T Consensus 218 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~ 297 (383)
T 3ei3_B 218 WLMATSSVDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQF 297 (383)
T ss_dssp TEEEEEETTSEEEEEEGGGCCSTTCEEEEEECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECCBCCC
T ss_pred CEEEEEeCCCEEEEEeCCCCCcccceEEEecCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCcccccccccccccc
Confidence 899999999999999997 55665554 46899999999 9999999999999999999999887777765421
Q ss_pred -----cc--------eEEEEecCCCCeEEEeeCCCcEEEEEecCCcceeEEEecccceeeeEEEEcCCCcEEEeecCCee
Q psy18231 461 -----DF--------RIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNV 527 (540)
Q Consensus 461 -----v~--------~~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~d~~i 527 (540)
+. .+.++++|++++ +|+.||.|++||+.+++.+..+....|...+..++|+|++++|++++|+.|
T Consensus 298 ~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~~~~l~~~~~~~~~~~~~~s~~g~~l~s~sd~~i 375 (383)
T 3ei3_B 298 QHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGGLVHQLRDPNAAGIISLNKFSPTGDVLASGMGFNI 375 (383)
T ss_dssp TTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTCCEEEEECBTTBCSCCCEEEECTTSSEEEEEETTEE
T ss_pred ccccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecCCCceeeeecCCCCCceEEEEEEecCccEEEEecCCcE
Confidence 11 122367777777 888999999999999999999984346788888999999999999999999
Q ss_pred EEEEccc
Q psy18231 528 KLWTAEE 534 (540)
Q Consensus 528 ~iw~~~~ 534 (540)
++|++++
T Consensus 376 ~iw~~~~ 382 (383)
T 3ei3_B 376 LIWNRED 382 (383)
T ss_dssp EEEECC-
T ss_pred EEEecCC
Confidence 9999975
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-41 Score=329.91 Aligned_cols=296 Identities=12% Similarity=0.170 Sum_probs=252.8
Q ss_pred eeeeecCeEEEEeCCCCCEEEEeeCCCcEEEEcCCCCe------eEEEeecCCcceeEEEEeeC----C---CeEEEeeC
Q psy18231 160 ELFVLSGLMHTRFPVDGSYCLTCGSDKKIKLWNPYRNL------LLKTYGGHAHEVNDATAACD----S---SQIASGAS 226 (540)
Q Consensus 160 ~~~h~~~v~~v~~spdg~~lat~~~dg~i~iwd~~~~~------~~~~~~~h~~~v~~l~~sp~----~---~~l~s~s~ 226 (540)
..+|.+.|++++|+| ++|++|+.||+|++||+.+++ .+..+.+|...|++++|+|+ + ++|++++.
T Consensus 12 ~~~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~ 89 (397)
T 1sq9_A 12 GKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSF 89 (397)
T ss_dssp SSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEET
T ss_pred hhhhhcCeEEEEecC--CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEEEEEcC
Confidence 447999999999999 799999999999999999887 78889999999999999999 9 99999999
Q ss_pred CCeEEEEEcCCCce-----eEecccc-----CCceeEEEEC----CCCCE-EEEecCCCcEEEEEecC------CCCCCc
Q psy18231 227 DKSVILWEVTTGQP-----VRRWREH-----ASKVTCVKFN----EDSSV-VISGSQDNTVMMWDVKS------RSHHPI 285 (540)
Q Consensus 227 dg~i~iwd~~~~~~-----~~~~~~h-----~~~v~~~~~~----~~~~~-l~s~~~dg~i~iwd~~~------~~~~~~ 285 (540)
||.|++||+.+++. +..+..| ...|.+++|+ |++++ |++++.||.|++||+++ .+....
T Consensus 90 dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 169 (397)
T 1sq9_A 90 SGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNW 169 (397)
T ss_dssp TSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCC
T ss_pred CCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccccceeec
Confidence 99999999999887 8888888 5999999999 99999 99999999999999987 321000
Q ss_pred chhhhhHhhhhcCCceeEEEEeecccccccccCceeeEEEeeeecccccceeeeeeccceeEEEeecccceecccccccc
Q psy18231 286 QVRCLNEALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPIS 365 (540)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 365 (540)
. ....+..
T Consensus 170 ~--------------------------------------------------------~~~~~~~---------------- 177 (397)
T 1sq9_A 170 S--------------------------------------------------------PTLELQG---------------- 177 (397)
T ss_dssp C--------------------------------------------------------CEEEEEE----------------
T ss_pred c--------------------------------------------------------Ccceeee----------------
Confidence 0 0000000
Q ss_pred cccchhhhhhcccccEEEEEecC-CeeEeeeCCCeEEEEeCCCCceEEeeeC--------CceEEEEEecCCcEEEeecC
Q psy18231 366 IHNSCFQALKEARDSITSVHVSD-HEILTASLDCRIRRYDIRTGNLVTDYVG--------EPIVDACFTRDCQCILTCST 436 (540)
Q Consensus 366 ~~~~~~~~~~~~~~~v~~l~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~--------~~i~~~~~sp~~~~l~~~~~ 436 (540)
.......|...|.+++|+| ..+++++.||.|++||+++++.+..+.. ..|.+++|+|++++|++++.
T Consensus 178 ----~~~~~~~~~~~i~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~ 253 (397)
T 1sq9_A 178 ----TVESPMTPSQFATSVDISERGLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHD 253 (397)
T ss_dssp ----EECCSSSSCCCCCEEEECTTSEEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEE
T ss_pred ----eeccccCCCCCceEEEECCCceEEEEeCCCcEEEEECCCCceeEEEeccccccccCCccceEEECCCCCEEEEEec
Confidence 0001245788899999998 5888999999999999999998887764 47999999999999999999
Q ss_pred C---CeEEEEeccccchhhhhcc-------------CcCCcceEEEEecCCCCeEEEeeCCCcEEEEEecCCcceeEEEe
Q psy18231 437 D---ECLRLFDKATGELLEEYKG-------------HKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIH 500 (540)
Q Consensus 437 d---g~i~i~d~~~~~~~~~~~~-------------~~~~v~~~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~ 500 (540)
| +.|++||+++++.+..+.. |...+..+ +|+|++++|++++.||.|++||+.+++.+..+..
T Consensus 254 d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 331 (397)
T 1sq9_A 254 SNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSL--SFNDSGETLCSAGWDGKLRFWDVKTKERITTLNM 331 (397)
T ss_dssp ETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEE--EECSSSSEEEEEETTSEEEEEETTTTEEEEEEEC
T ss_pred CCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEE--EECCCCCEEEEEeCCCeEEEEEcCCCceeEEEec
Confidence 9 9999999999999999988 88888887 8999999999999999999999999999888872
Q ss_pred c----cc---------------ceeeeEEEEcCCC----------cEEEeec-CCeeEEEEcccc
Q psy18231 501 S----VG---------------KAVVNSLCSHPTR----------KHIMSAC-GNNVKLWTAEED 535 (540)
Q Consensus 501 ~----~~---------------~~~v~~l~~s~d~----------~~l~s~~-d~~i~iw~~~~~ 535 (540)
. .| ...|++++|+|++ ++|++++ ||.|++|+++++
T Consensus 332 ~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~g 396 (397)
T 1sq9_A 332 HCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREAGG 396 (397)
T ss_dssp CGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC-
T ss_pred ccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEEcCCC
Confidence 1 34 8999999999998 7999999 999999999875
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.6e-42 Score=336.18 Aligned_cols=287 Identities=15% Similarity=0.168 Sum_probs=232.7
Q ss_pred eeeeecCeEEEEeCC-CCCEEEEeeCCCcEEEEcCCCCee--EEEeecCCcceeEEEEee-CCCeEEEeeCCCeEEEEEc
Q psy18231 160 ELFVLSGLMHTRFPV-DGSYCLTCGSDKKIKLWNPYRNLL--LKTYGGHAHEVNDATAAC-DSSQIASGASDKSVILWEV 235 (540)
Q Consensus 160 ~~~h~~~v~~v~~sp-dg~~lat~~~dg~i~iwd~~~~~~--~~~~~~h~~~v~~l~~sp-~~~~l~s~s~dg~i~iwd~ 235 (540)
...|...|+|++|+| ++++||+|+.||+|+|||+.+++. ...+.+|.+.|++++|+| ++++|++++.||+|++||+
T Consensus 115 ~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~ 194 (435)
T 4e54_B 115 AAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDF 194 (435)
T ss_dssp EEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEET
T ss_pred CCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeec
Confidence 456889999999999 577999999999999999987654 444568999999999998 7899999999999999999
Q ss_pred CCCceeEecc--ccCCceeEEEECCCCCEEEEecCCCcEEEEEecCCCCCCcchhhhhHhhhhcCCceeEEEEeeccccc
Q psy18231 236 TTGQPVRRWR--EHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKN 313 (540)
Q Consensus 236 ~~~~~~~~~~--~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (540)
+++....... .+...+.+++|+|++++|++|+.||.|++||++...
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~~~-------------------------------- 242 (435)
T 4e54_B 195 KGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGKE-------------------------------- 242 (435)
T ss_dssp TSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSSCB--------------------------------
T ss_pred cCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCcce--------------------------------
Confidence 7765433332 334567899999999999999999999999986532
Q ss_pred ccccCceeeEEEeeeecccccceeeeeeccceeEEEeecccceecccccccccccchhhhhhcccccEEEEEecC---Ce
Q psy18231 314 HLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEARDSITSVHVSD---HE 390 (540)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~---~~ 390 (540)
+..+.+|...|.+++|+| .+
T Consensus 243 ---------------------------------------------------------~~~~~~h~~~v~~v~~~p~~~~~ 265 (435)
T 4e54_B 243 ---------------------------------------------------------LWNLRMHKKKVTHVALNPCCDWF 265 (435)
T ss_dssp ---------------------------------------------------------CCCSBCCSSCEEEEEECTTCSSE
T ss_pred ---------------------------------------------------------eEEEecccceEEeeeecCCCceE
Confidence 114567899999999998 47
Q ss_pred eEeeeCCCeEEEEeCCCCceEEee-----eCCceEEEEEecCCcEEEeecCCCeEEEEeccccchhhhhccCcCC----c
Q psy18231 391 ILTASLDCRIRRYDIRTGNLVTDY-----VGEPIVDACFTRDCQCILTCSTDECLRLFDKATGELLEEYKGHKSG----D 461 (540)
Q Consensus 391 l~~~~~dg~i~iwd~~~~~~~~~~-----~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~----v 461 (540)
+++++.|+.|++||+++.+....+ +...|++++|+|+|++|++++.||.|++||+.+++....+..|... +
T Consensus 266 ~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 345 (435)
T 4e54_B 266 LATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHL 345 (435)
T ss_dssp EEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECCCCCCCCSSS
T ss_pred EEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEecccccccccc
Confidence 889999999999999987654333 2368999999999999999999999999999998877766655432 2
Q ss_pred ceEEEEecCCCCeEEEee------------CCCcEEEEEecCCcceeEEEecccceeeeEE-EEcCCCcEEEeecCCeeE
Q psy18231 462 FRIECCLDSKDSQIFCGS------------SDGKIYKWQLVDSSQISTLIHSVGKAVVNSL-CSHPTRKHIMSACGNNVK 528 (540)
Q Consensus 462 ~~~~~~~s~~~~~l~s~s------------~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l-~~s~d~~~l~s~~d~~i~ 528 (540)
..+...|+|++.++++++ .++.|++||..+++.+..+.. +|...|.++ +|+|+|++|++|+|++|+
T Consensus 346 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~-~~~~~v~s~~~fspdg~~lasg~d~~i~ 424 (435)
T 4e54_B 346 TPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYD-PESSGISSLNEFNPMGDTLASAMGYHIL 424 (435)
T ss_dssp CCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECC-SSCCCCCCEEEECTTSSCEEEECSSEEE
T ss_pred eeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeC-CCCCcEEEEEEECCCCCEEEEEcCCcEE
Confidence 233336677776666654 346799999999999888753 678888887 699999999998888999
Q ss_pred EEEccccc
Q psy18231 529 LWTAEEDY 536 (540)
Q Consensus 529 iw~~~~~~ 536 (540)
||+++++-
T Consensus 425 iW~~~~gk 432 (435)
T 4e54_B 425 IWSQQEAR 432 (435)
T ss_dssp ECCCC---
T ss_pred EEECCcCe
Confidence 99998763
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-41 Score=331.61 Aligned_cols=336 Identities=13% Similarity=0.122 Sum_probs=262.3
Q ss_pred cceeccccchhhhhhcccccceeeeeccccccee--eeeecCeEEEEeCCCCCEEEEeeCCCcEEEEcCCCCeeEEEeec
Q psy18231 127 PLLFSLPRTITRILYELPKEWSIRVYRPLTVNRE--LFVLSGLMHTRFPVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGG 204 (540)
Q Consensus 127 ~~~~s~~~~~~~~~~~~~~~~~i~~~~~~~~~~~--~~h~~~v~~v~~spdg~~lat~~~dg~i~iwd~~~~~~~~~~~~ 204 (540)
.+.|+++ ...++.++.++.+++|+..+.... ......+....|+|++++|++|+.||.|++||+.+++....+.+
T Consensus 61 ~~~~s~~---g~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 137 (420)
T 3vl1_A 61 GNTFEKV---GSHLYKARLDGHDFLFNTIIRDGSKMLKRADYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQREIDQA 137 (420)
T ss_dssp TCEEEEE---ETTEEEEEETTEEEEEECCSEETTTTSCSCCEEEEEEECSSSCEEEEEETTSCEEEECTTSCEEEEETTS
T ss_pred ceeeeec---CCeEEEEEcCCcEEEEEecccceeeEEecCCceEEEEEecCCCEEEEEECCCCEEEEeCCCcceeeeccc
Confidence 4566666 345667788999999998765421 11224455567899999999999999999999999999988889
Q ss_pred CCcceeEEEEeeCCCeEEEeeCCCeEEEEEcCCCceeEeccccCCceeEEEECCCCCEEEEecCCCcEEEEEecCCCCCC
Q psy18231 205 HAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHP 284 (540)
Q Consensus 205 h~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~ 284 (540)
|...|++++|+|++++|++++.|++|++||+.+++.+..+.+|...|.+++|+|++++|++++.||+|++||+++++...
T Consensus 138 h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~ 217 (420)
T 3vl1_A 138 HVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIH 217 (420)
T ss_dssp SSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEE
T ss_pred ccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCceeE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998765211
Q ss_pred cchhhhhHhhhhcCCceeEEEEeecccccccccCceeeEEEeeeecccccceeeeeeccceeEEEeecccceeccccccc
Q psy18231 285 IQVRCLNEALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPI 364 (540)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (540)
.. .. .......+..+..... .
T Consensus 218 ~~--~~---~~~~~~~v~~~~~~~~--------------------------------------------~---------- 238 (420)
T 3vl1_A 218 TF--NR---KENPHDGVNSIALFVG--------------------------------------------T---------- 238 (420)
T ss_dssp EE--CB---TTBTTCCEEEEEEEEC--------------------------------------------C----------
T ss_pred Ee--ec---CCCCCCCccEEEEecC--------------------------------------------C----------
Confidence 10 00 0000000000000000 0
Q ss_pred ccccchhhhhhcccccEEEEEecC--CeeEeeeCCCeEEEEeCCCCceEEeeeC---CceEEEEEecCCc-EEEeecCCC
Q psy18231 365 SIHNSCFQALKEARDSITSVHVSD--HEILTASLDCRIRRYDIRTGNLVTDYVG---EPIVDACFTRDCQ-CILTCSTDE 438 (540)
Q Consensus 365 ~~~~~~~~~~~~~~~~v~~l~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~---~~i~~~~~sp~~~-~l~~~~~dg 438 (540)
.......+...+.+++|+| +++++++.||.|++||+++++.+..+.. ..+.+++|+|+++ +|++++.||
T Consensus 239 -----~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg 313 (420)
T 3vl1_A 239 -----DRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENG 313 (420)
T ss_dssp -----CSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEECCTTSSCEEEEEECSSCTTEEEEEETTS
T ss_pred -----cceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEcccccCCCceeEEEeCCCCCEEEEEeCCC
Confidence 0002234567788888988 7899999999999999999988777753 5799999999999 999999999
Q ss_pred eEEEEeccccch-hhhhcc-CcCCcceEEEEecCCCCeEEEeeCCCcEEEEEecCCcc---------eeEEEecccceee
Q psy18231 439 CLRLFDKATGEL-LEEYKG-HKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQ---------ISTLIHSVGKAVV 507 (540)
Q Consensus 439 ~i~i~d~~~~~~-~~~~~~-~~~~v~~~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~---------~~~~~~~~~~~~v 507 (540)
.|++||+++++. +..+.. |...+..+ +++++++|++++.||.|++||+.+.+. ...+. .|...|
T Consensus 314 ~i~vwd~~~~~~~~~~~~~~~~~~v~~~---~~~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~--~~~~~v 388 (420)
T 3vl1_A 314 MLAQWDLRSPECPVGEFLINEGTPINNV---YFAAGALFVSSGFDTSIKLDIISDPESERPAIEFETPTFLV--SNDDAV 388 (420)
T ss_dssp EEEEEETTCTTSCSEEEEESTTSCEEEE---EEETTEEEEEETTTEEEEEEEECCTTCCSCEECTTSCEEEC--CSSCCC
T ss_pred eEEEEEcCCCcCchhhhhccCCCCceEE---EeCCCCEEEEecCCccEEEEeccCCCCCccceeccCccEEc--cCCcce
Confidence 999999998754 677777 45555544 456788999999999999999987422 22333 788899
Q ss_pred eEEEEcCCCc---EEEeec-CCeeEEEEccc
Q psy18231 508 NSLCSHPTRK---HIMSAC-GNNVKLWTAEE 534 (540)
Q Consensus 508 ~~l~~s~d~~---~l~s~~-d~~i~iw~~~~ 534 (540)
.+++|+|+++ .|++++ +|.+.+|++++
T Consensus 389 ~~~~~s~~~~~~g~l~a~g~~g~~~~~~~~~ 419 (420)
T 3vl1_A 389 SQFCYVSDDESNGEVLEVGKNNFCALYNLSN 419 (420)
T ss_dssp CEEEEECCSSSSCEEEEEETTTEEEEEESCC
T ss_pred EEEEEccCCCCcceEEEEcCCceEEEEeccC
Confidence 9999999999 455545 99999999875
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-41 Score=324.10 Aligned_cols=287 Identities=13% Similarity=0.182 Sum_probs=247.5
Q ss_pred eeeecCeEEEEeCCCCCEEEEeeCCCcEEEEcCCCCe--eEEEeecCCcceeEEEEeeCCCeEEEeeCCCeEEEEEcCCC
Q psy18231 161 LFVLSGLMHTRFPVDGSYCLTCGSDKKIKLWNPYRNL--LLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTG 238 (540)
Q Consensus 161 ~~h~~~v~~v~~spdg~~lat~~~dg~i~iwd~~~~~--~~~~~~~h~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~ 238 (540)
..|.++|++++|+|++++|++++.|+.|++||+.+++ .+..+.+|...|.+++|+|++++|++++.||.|++||++++
T Consensus 5 ~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~ 84 (372)
T 1k8k_C 5 SFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGR 84 (372)
T ss_dssp ESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETT
T ss_pred cccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCCC
Confidence 3488999999999999999999999999999999987 88899999999999999999999999999999999999888
Q ss_pred ceeEe--ccccCCceeEEEECCCCCEEEEecCCCcEEEEEecCCCCCCcchhhhhHhhhhcCCceeEEEEeecccccccc
Q psy18231 239 QPVRR--WREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHLS 316 (540)
Q Consensus 239 ~~~~~--~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (540)
+.... +..|...|.+++|+|++++|++++.||.|++||++........
T Consensus 85 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~------------------------------ 134 (372)
T 1k8k_C 85 TWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVC------------------------------ 134 (372)
T ss_dssp EEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEE------------------------------
T ss_pred eeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceee------------------------------
Confidence 75443 4679999999999999999999999999999999876520000
Q ss_pred cCceeeEEEeeeecccccceeeeeeccceeEEEeecccceecccccccccccchhhhhhcccccEEEEEecC--CeeEee
Q psy18231 317 NGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEARDSITSVHVSD--HEILTA 394 (540)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~--~~l~~~ 394 (540)
......|...|.+++|+| ++++++
T Consensus 135 ------------------------------------------------------~~~~~~~~~~i~~~~~~~~~~~l~~~ 160 (372)
T 1k8k_C 135 ------------------------------------------------------KHIKKPIRSTVLSLDWHPNSVLLAAG 160 (372)
T ss_dssp ------------------------------------------------------EEECTTCCSCEEEEEECTTSSEEEEE
T ss_pred ------------------------------------------------------eeeecccCCCeeEEEEcCCCCEEEEE
Confidence 002346788999999998 789999
Q ss_pred eCCCeEEEEeCC------------------CCceEEeeeC--CceEEEEEecCCcEEEeecCCCeEEEEeccccchhhhh
Q psy18231 395 SLDCRIRRYDIR------------------TGNLVTDYVG--EPIVDACFTRDCQCILTCSTDECLRLFDKATGELLEEY 454 (540)
Q Consensus 395 ~~dg~i~iwd~~------------------~~~~~~~~~~--~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~ 454 (540)
+.||.|++||++ .++.+..+.. ..+.+++|+|++++|++++.|+.|++||+++++.+..+
T Consensus 161 ~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~ 240 (372)
T 1k8k_C 161 SCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATL 240 (372)
T ss_dssp ETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEE
T ss_pred cCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCceeEEE
Confidence 999999999954 5677777754 57999999999999999999999999999999999999
Q ss_pred ccCcCCcceEEEEecCCCCeEEEeeCCCcEEEEEecC--Ccc--e-----------------------------------
Q psy18231 455 KGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVD--SSQ--I----------------------------------- 495 (540)
Q Consensus 455 ~~~~~~v~~~~~~~s~~~~~l~s~s~dg~i~iwd~~~--~~~--~----------------------------------- 495 (540)
..|...+..+ +|+|++++|++| .|+.|++|++.+ ++. +
T Consensus 241 ~~~~~~v~~~--~~~~~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (372)
T 1k8k_C 241 ASETLPLLAV--TFITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAA 317 (372)
T ss_dssp ECSSCCEEEE--EEEETTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC--------
T ss_pred ccCCCCeEEE--EEecCCCEEEEE-eCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhcccccccccCccc
Confidence 9999888887 899999988888 899999999988 420 0
Q ss_pred -eEEEecccceeeeEEEEc-CCC---cEEEeec-CCeeEEEEcccc
Q psy18231 496 -STLIHSVGKAVVNSLCSH-PTR---KHIMSAC-GNNVKLWTAEED 535 (540)
Q Consensus 496 -~~~~~~~~~~~v~~l~~s-~d~---~~l~s~~-d~~i~iw~~~~~ 535 (540)
..+. .+|...|++++|+ ++| ++|++++ ||.|++|+++++
T Consensus 318 ~~~~~-~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~~ 362 (372)
T 1k8k_C 318 GAGLD-SLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSL 362 (372)
T ss_dssp -CCCS-SSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHHH
T ss_pred ccccc-ccccCCcceeEEecCCCcceeeEEEecCCCceEEEEecCh
Confidence 1111 2799999999966 676 9999999 999999999764
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=6e-41 Score=319.50 Aligned_cols=269 Identities=19% Similarity=0.307 Sum_probs=237.5
Q ss_pred cceeccccchhhhhhcccccceeeeecccccce---eeeeecCeEEEEeCCCCCEEEEeeCCCcEEEEcCCCC------e
Q psy18231 127 PLLFSLPRTITRILYELPKEWSIRVYRPLTVNR---ELFVLSGLMHTRFPVDGSYCLTCGSDKKIKLWNPYRN------L 197 (540)
Q Consensus 127 ~~~~s~~~~~~~~~~~~~~~~~i~~~~~~~~~~---~~~h~~~v~~v~~spdg~~lat~~~dg~i~iwd~~~~------~ 197 (540)
.+.|+++ ...+++++.|++|++|+..+... ...|...|.+++|+|+|++|++|+.|+.+++|++... .
T Consensus 69 ~~~~s~d---~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~~~~~~~~~~~~ 145 (354)
T 2pbi_B 69 CMDWCKD---KRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYPLTFDKNENMAA 145 (354)
T ss_dssp EEEECTT---SSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEEECCCCTTCCSGG
T ss_pred EEEECCC---CCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEEEEeccccccccc
Confidence 3445544 35677889999999999876543 3347788999999999999999999999999997643 3
Q ss_pred eEEEeecCCcceeEEEEeeCCCeEEEeeCCCeEEEEEcCCCceeEeccccCCceeEEEECC--CCCEEEEecCCCcEEEE
Q psy18231 198 LLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNE--DSSVVISGSQDNTVMMW 275 (540)
Q Consensus 198 ~~~~~~~h~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~--~~~~l~s~~~dg~i~iw 275 (540)
....+.+|...|.+++|+|++..|++++.|++|++||+++++.+..+.+|...|.+++|+| ++++|++|+.||+|++|
T Consensus 146 ~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~w 225 (354)
T 2pbi_B 146 KKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVW 225 (354)
T ss_dssp GCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEE
T ss_pred cceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEE
Confidence 4567788999999999999999999999999999999999999999999999999999988 56899999999999999
Q ss_pred EecCCCCCCcchhhhhHhhhhcCCceeEEEEeecccccccccCceeeEEEeeeecccccceeeeeeccceeEEEeecccc
Q psy18231 276 DVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGS 355 (540)
Q Consensus 276 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (540)
|+++++.
T Consensus 226 d~~~~~~------------------------------------------------------------------------- 232 (354)
T 2pbi_B 226 DMRSGQC------------------------------------------------------------------------- 232 (354)
T ss_dssp ETTTCCE-------------------------------------------------------------------------
T ss_pred ECCCCcE-------------------------------------------------------------------------
Confidence 9987651
Q ss_pred eecccccccccccchhhhhhcccccEEEEEecC--CeeEeeeCCCeEEEEeCCCCceEEeeeC----CceEEEEEecCCc
Q psy18231 356 TQIGDVTPISIHNSCFQALKEARDSITSVHVSD--HEILTASLDCRIRRYDIRTGNLVTDYVG----EPIVDACFTRDCQ 429 (540)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~----~~i~~~~~sp~~~ 429 (540)
...+..|...|.+++|+| +.+++++.|++|++||+++++.+..+.. ..+.+++|+|+++
T Consensus 233 ---------------~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g~ 297 (354)
T 2pbi_B 233 ---------------VQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGR 297 (354)
T ss_dssp ---------------EEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSS
T ss_pred ---------------EEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccceeEEEEeCCCC
Confidence 124567889999999998 8899999999999999999887766653 3689999999999
Q ss_pred EEEeecCCCeEEEEeccccchhhhhccCcCCcceEEEEecCCCCeEEEeeCCCcEEEEE
Q psy18231 430 CILTCSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQ 488 (540)
Q Consensus 430 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~s~~~~~l~s~s~dg~i~iwd 488 (540)
+|++|+.|+.|++||+.+++.+..+.+|...|.++ +|+|+|++|++|+.||+|++|+
T Consensus 298 ~l~~g~~d~~i~vwd~~~~~~~~~l~~h~~~v~~l--~~spdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 298 LLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTL--RVSPDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp EEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEE--EECTTSSCEEEEETTSEEEEEC
T ss_pred EEEEEECCCcEEEEECCCCceEEEEECCCCcEEEE--EECCCCCEEEEEcCCCCEEecC
Confidence 99999999999999999999999999999999888 8999999999999999999996
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-41 Score=321.69 Aligned_cols=287 Identities=14% Similarity=0.219 Sum_probs=240.0
Q ss_pred eeeecCeEEEEeCCCCCEE-EEeeC---CCcEEEEcCCCCeeEEEe-ecCCcceeEEEEeeC---CCeEEEeeCCCeEEE
Q psy18231 161 LFVLSGLMHTRFPVDGSYC-LTCGS---DKKIKLWNPYRNLLLKTY-GGHAHEVNDATAACD---SSQIASGASDKSVIL 232 (540)
Q Consensus 161 ~~h~~~v~~v~~spdg~~l-at~~~---dg~i~iwd~~~~~~~~~~-~~h~~~v~~l~~sp~---~~~l~s~s~dg~i~i 232 (540)
.+|.+.|.+++|+|+++.+ ++|+. ||.|++||+.+++..... .+|...|.+++|+|+ +++|++++.||.|++
T Consensus 15 ~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i 94 (357)
T 3i2n_A 15 KGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGGNLHI 94 (357)
T ss_dssp EECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETTSCEEE
T ss_pred cCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecCCCeEEE
Confidence 4699999999999999655 56665 899999999988765443 369999999999998 699999999999999
Q ss_pred EEcCCCc-eeEeccccCCceeEEEE------CCCCCEEEEecCCCcEEEEEecCCCCCCcchhhhhHhhhhcCCceeEEE
Q psy18231 233 WEVTTGQ-PVRRWREHASKVTCVKF------NEDSSVVISGSQDNTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVH 305 (540)
Q Consensus 233 wd~~~~~-~~~~~~~h~~~v~~~~~------~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (540)
||+.+++ .+..+.+|...|.++.| +|++++|++++.||.|++||+++++.....
T Consensus 95 wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~------------------- 155 (357)
T 3i2n_A 95 WNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVAN------------------- 155 (357)
T ss_dssp ECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEE-------------------
T ss_pred EeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCccee-------------------
Confidence 9999988 88889999999999954 688999999999999999999876520000
Q ss_pred EeecccccccccCceeeEEEeeeecccccceeeeeeccceeEEEeecccceecccccccccccchhhhhh-cccccEEEE
Q psy18231 306 SLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALK-EARDSITSV 384 (540)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~l 384 (540)
+.... .+...+.++
T Consensus 156 -----------------------------------------------------------------~~~~~~~~~~~v~~~ 170 (357)
T 3i2n_A 156 -----------------------------------------------------------------MEPVQGENKRDCWTV 170 (357)
T ss_dssp -----------------------------------------------------------------ECCCTTSCCCCEEEE
T ss_pred -----------------------------------------------------------------ccccCCCCCCceEEE
Confidence 00001 113467777
Q ss_pred E----ecC--CeeEeeeCCCeEEEEeCCCCceEEeee-CCceEEEEEec---CCcEEEeecCCCeEEEEeccccchhhhh
Q psy18231 385 H----VSD--HEILTASLDCRIRRYDIRTGNLVTDYV-GEPIVDACFTR---DCQCILTCSTDECLRLFDKATGELLEEY 454 (540)
Q Consensus 385 ~----~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~i~~~~~sp---~~~~l~~~~~dg~i~i~d~~~~~~~~~~ 454 (540)
+ |++ ..+++++.||.|++||+++++...... ...+.+++|+| ++++|++++.||.|++||+++++.+..+
T Consensus 171 ~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~ 250 (357)
T 3i2n_A 171 AFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWETNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGF 250 (357)
T ss_dssp EEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTEE
T ss_pred EEEeccCCCCCEEEEEccCCeEEEEECccCceeeecCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccce
Confidence 7 555 889999999999999999998765554 47899999999 9999999999999999999999888777
Q ss_pred c-----cCcCCcceEEEEecCCCC-eEEEeeCCCcEEEEEecCCc-------------------ceeEEEecccceeeeE
Q psy18231 455 K-----GHKSGDFRIECCLDSKDS-QIFCGSSDGKIYKWQLVDSS-------------------QISTLIHSVGKAVVNS 509 (540)
Q Consensus 455 ~-----~~~~~v~~~~~~~s~~~~-~l~s~s~dg~i~iwd~~~~~-------------------~~~~~~~~~~~~~v~~ 509 (540)
. +|...+..+ +|+|+++ +|++++.||.|++||+.++. .+..+. .|...|++
T Consensus 251 ~~~~~~~~~~~v~~~--~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~--~~~~~v~~ 326 (357)
T 3i2n_A 251 ASVSEKAHKSTVWQV--RHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVT--LSTQPISS 326 (357)
T ss_dssp EEEEEECCSSCEEEE--EEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEE--CCSSCEEE
T ss_pred eeeccCCCcCCEEEE--EECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccc--cCCCCeeE
Confidence 6 899988888 8999998 89999999999999998653 445555 89999999
Q ss_pred EEEcCCCcEEE-eec-CCeeEEEEcccc
Q psy18231 510 LCSHPTRKHIM-SAC-GNNVKLWTAEED 535 (540)
Q Consensus 510 l~~s~d~~~l~-s~~-d~~i~iw~~~~~ 535 (540)
++|+|++++|+ +++ |+.|++|++.+.
T Consensus 327 ~~~s~~~~~l~~s~~~d~~i~iw~~~~~ 354 (357)
T 3i2n_A 327 LDWSPDKRGLCVCSSFDQTVRVLIVTKL 354 (357)
T ss_dssp EEECSSSTTEEEEEETTSEEEEEEECC-
T ss_pred EEEcCCCCeEEEEecCCCcEEEEECCCc
Confidence 99999999998 788 999999999764
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.7e-41 Score=313.48 Aligned_cols=264 Identities=17% Similarity=0.314 Sum_probs=228.9
Q ss_pred hhhhhcccccceeeeeccccc--------ceeeeeecCeEEEEeCCCCCEEEEeeCCCcEEEEcCCCCeeEEEeecCCcc
Q psy18231 137 TRILYELPKEWSIRVYRPLTV--------NRELFVLSGLMHTRFPVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHE 208 (540)
Q Consensus 137 ~~~~~~~~~~~~i~~~~~~~~--------~~~~~h~~~v~~v~~spdg~~lat~~~dg~i~iwd~~~~~~~~~~~~h~~~ 208 (540)
..++++++.|++|++|+.... ....+|...|.+++|+|+|++|++|+.|++|++||+.+++.+..+.+|...
T Consensus 30 ~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v~~wd~~~~~~~~~~~~h~~~ 109 (319)
T 3frx_A 30 PNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSD 109 (319)
T ss_dssp TTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSC
T ss_pred ccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeCCCEEEEEECCCCCeeEEEccCCCc
Confidence 467788999999999987542 123569999999999999999999999999999999999999999999999
Q ss_pred eeEEEEeeCCCeEEEeeCCCeEEEEEcCCCceeEeccccCCceeEEEECCC------CCEEEEecCCCcEEEEEecCCCC
Q psy18231 209 VNDATAACDSSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNED------SSVVISGSQDNTVMMWDVKSRSH 282 (540)
Q Consensus 209 v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~------~~~l~s~~~dg~i~iwd~~~~~~ 282 (540)
|.+++|+|++++|++++.|++|++||++ ++.+..+.+|...|.++.|+|. +..+++++.|+.|++||+++.+.
T Consensus 110 v~~~~~~~~~~~l~s~s~D~~i~vwd~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~ 188 (319)
T 3frx_A 110 VMSVDIDKKASMIISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQI 188 (319)
T ss_dssp EEEEEECTTSCEEEEEETTSCEEEEETT-SCEEEEECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEE
T ss_pred EEEEEEcCCCCEEEEEeCCCeEEEEECC-CCeEEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchh
Confidence 9999999999999999999999999995 5677788899999999999984 44899999999999999976541
Q ss_pred CCcchhhhhHhhhhcCCceeEEEEeecccccccccCceeeEEEeeeecccccceeeeeeccceeEEEeecccceeccccc
Q psy18231 283 HPIQVRCLNEALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVT 362 (540)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (540)
T Consensus 189 -------------------------------------------------------------------------------- 188 (319)
T 3frx_A 189 -------------------------------------------------------------------------------- 188 (319)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccchhhhhhcccccEEEEEecC--CeeEeeeCCCeEEEEeCCCCceEEeeeC-CceEEEEEecCCcEEEeecCCCe
Q psy18231 363 PISIHNSCFQALKEARDSITSVHVSD--HEILTASLDCRIRRYDIRTGNLVTDYVG-EPIVDACFTRDCQCILTCSTDEC 439 (540)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~v~~l~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~i~~~~~sp~~~~l~~~~~dg~ 439 (540)
...+.+|...|.+++|+| .+|++++.||.|++||+.+++.+..+.. ..+.+++|+|++.+|++++.+ .
T Consensus 189 --------~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~-~ 259 (319)
T 3frx_A 189 --------EADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPNRYWLAAATAT-G 259 (319)
T ss_dssp --------EEEECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECCSCEEEEEECSSSSEEEEEETT-E
T ss_pred --------heeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCcEEEEEEcCCCCEEEEEcCC-C
Confidence 114557899999999999 7899999999999999999999888875 689999999999999988765 5
Q ss_pred EEEEeccccchhhhhc--------cCcCCcceEEEEecCCCCeEEEeeCCCcEEEEEecCC
Q psy18231 440 LRLFDKATGELLEEYK--------GHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDS 492 (540)
Q Consensus 440 i~i~d~~~~~~~~~~~--------~~~~~v~~~~~~~s~~~~~l~s~s~dg~i~iwd~~~~ 492 (540)
+++|++..+..+..+. .|...+..+ +|+|||++|++|+.||.|++||+.++
T Consensus 260 i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~spdg~~l~sg~~Dg~i~vWd~~t~ 318 (319)
T 3frx_A 260 IKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSL--AWSADGQTLFAGYTDNVIRVWQVMTA 318 (319)
T ss_dssp EEEEEETTEEEEEEECCCCTTCCGGGCCCEEEE--EECTTSSEEEEEETTSCEEEEEEEEC
T ss_pred cEEEEeCcCeeeeccCccccccccCcCcceeEE--EECCCCCEEEEeecCceEEEEEEeec
Confidence 9999998776554443 234445555 99999999999999999999998764
|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-41 Score=322.13 Aligned_cols=275 Identities=15% Similarity=0.239 Sum_probs=221.0
Q ss_pred cceeccccchhhhhhcccc------cceeeeecccccc-------eeeeeecCeEEEEeCCCCCEEEEeeCCCcEEEEcC
Q psy18231 127 PLLFSLPRTITRILYELPK------EWSIRVYRPLTVN-------RELFVLSGLMHTRFPVDGSYCLTCGSDKKIKLWNP 193 (540)
Q Consensus 127 ~~~~s~~~~~~~~~~~~~~------~~~i~~~~~~~~~-------~~~~h~~~v~~v~~spdg~~lat~~~dg~i~iwd~ 193 (540)
.+.|+++. ..+++++. ++.+++|+..+.. ....|...|.+++|+|++++ ++++.||+|+|||+
T Consensus 47 ~v~fSpDG---~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~~-l~~s~dg~v~lWd~ 122 (357)
T 4g56_B 47 AVRYRRDG---ALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKGI-LVASDSGAVELWEI 122 (357)
T ss_dssp EEEECSSS---CEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETTTEE-EEEETTSCEEEC--
T ss_pred EEEECCCC---CEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCCCCE-EEEECCCEEEEeec
Confidence 45566663 33444444 5678888875532 33568899999999999865 46778999999999
Q ss_pred CCCeeEE----EeecCCcceeEEEEeeCCCeEEEeeCCCeEEEEEcCCCceeEeccccCCceeEEEECCCCC-EEEEecC
Q psy18231 194 YRNLLLK----TYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSS-VVISGSQ 268 (540)
Q Consensus 194 ~~~~~~~----~~~~h~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~s~~~ 268 (540)
.+++... ...+|...|++++|+|++++|++++.|++|++||+++++.+..+++|...|.+++|++++. ++++++.
T Consensus 123 ~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~ 202 (357)
T 4g56_B 123 LEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGE 202 (357)
T ss_dssp ------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCSSCEEEEET
T ss_pred cccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCceeeeecc
Confidence 8876543 3457999999999999999999999999999999999999999999999999999999874 7899999
Q ss_pred CCcEEEEEecCCCCCCcchhhhhHhhhhcCCceeEEEEeecccccccccCceeeEEEeeeecccccceeeeeeccceeEE
Q psy18231 269 DNTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMV 348 (540)
Q Consensus 269 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (540)
||+|++||+++++.....
T Consensus 203 dg~v~~wd~~~~~~~~~~-------------------------------------------------------------- 220 (357)
T 4g56_B 203 DGRILLWDTRKPKPATRI-------------------------------------------------------------- 220 (357)
T ss_dssp TSCEEECCTTSSSCBCBC--------------------------------------------------------------
T ss_pred CCceEEEECCCCceeeee--------------------------------------------------------------
Confidence 999999999887631111
Q ss_pred EeecccceecccccccccccchhhhhhcccccEEEEEecC---CeeEeeeCCCeEEEEeCCCCceEEeeeC--CceEEEE
Q psy18231 349 LLDFLGSTQIGDVTPISIHNSCFQALKEARDSITSVHVSD---HEILTASLDCRIRRYDIRTGNLVTDYVG--EPIVDAC 423 (540)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~~--~~i~~~~ 423 (540)
....+...+.+++|+| .++++|+.|+.|++||+++++.+..+.+ ..|++++
T Consensus 221 ------------------------~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~~~~~~v~~l~ 276 (357)
T 4g56_B 221 ------------------------DFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAVHSQNITGLA 276 (357)
T ss_dssp ------------------------CCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEECCCSSCEEEEE
T ss_pred ------------------------eeccccccccchhhhhcccceEEEeecccceeEEECCCCcEeEEEeccceeEEEEE
Confidence 2345677899999997 5788999999999999999998888865 5899999
Q ss_pred EecCC-cEEEeecCCCeEEEEeccccchhhhhccCcCCcceEEEEecC-CCCeEEEeeCCCcEEEEEecCCcc
Q psy18231 424 FTRDC-QCILTCSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLDS-KDSQIFCGSSDGKIYKWQLVDSSQ 494 (540)
Q Consensus 424 ~sp~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~s~-~~~~l~s~s~dg~i~iwd~~~~~~ 494 (540)
|+|++ ++|++++.|++|+|||+++++.+..+ +|...|+++ +|+| ++++|++++.||+|++|++.+...
T Consensus 277 ~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~-~H~~~V~~v--afsP~d~~~l~s~s~Dg~v~iW~~~~~~~ 346 (357)
T 4g56_B 277 YSYHSSPFLASISEDCTVAVLDADFSEVFRDL-SHRDFVTGV--AWSPLDHSKFTTVGWDHKVLHHHLPSEGR 346 (357)
T ss_dssp ECSSSSCCEEEEETTSCEEEECTTSCEEEEEC-CCSSCEEEE--EECSSSTTEEEEEETTSCEEEEECC----
T ss_pred EcCCCCCEEEEEeCCCEEEEEECCCCcEeEEC-CCCCCEEEE--EEeCCCCCEEEEEcCCCeEEEEECCCCCc
Confidence 99987 57999999999999999999877655 799999888 8998 789999999999999999876443
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.7e-41 Score=372.67 Aligned_cols=395 Identities=19% Similarity=0.292 Sum_probs=295.3
Q ss_pred cceeccccchhhhhhcccccceeeeecccccce---eeeeecCeEEEEeCCCCCEEEEeeCCCcEEEEcCCCCeeEEEee
Q psy18231 127 PLLFSLPRTITRILYELPKEWSIRVYRPLTVNR---ELFVLSGLMHTRFPVDGSYCLTCGSDKKIKLWNPYRNLLLKTYG 203 (540)
Q Consensus 127 ~~~~s~~~~~~~~~~~~~~~~~i~~~~~~~~~~---~~~h~~~v~~v~~spdg~~lat~~~dg~i~iwd~~~~~~~~~~~ 203 (540)
.+.|+++ ...+++++.+++|++|+..+... ..+|.+.|.+++|+|+|++|++++.||+|++||+.+++.+..+.
T Consensus 620 ~~~~s~~---~~~l~s~~~d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~ 696 (1249)
T 3sfz_A 620 HACFSQD---GQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYD 696 (1249)
T ss_dssp EEEECTT---SSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred EEEECCC---CCEEEEEeCCCeEEEEECCCCCEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCCCceEEEEc
Confidence 3455555 34567788999999999987653 34599999999999999999999999999999999999999999
Q ss_pred cCCcceeEEEEee--CCCeEEEeeCCCeEEEEEcCCCceeEeccccCCceeEEEECCCCCEEEEecCCCcEEEEEecCCC
Q psy18231 204 GHAHEVNDATAAC--DSSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRS 281 (540)
Q Consensus 204 ~h~~~v~~l~~sp--~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~ 281 (540)
+|...|.+++|+| ++.++++++.|+.|++||+.+++.+..+.+|.+.|.+++|+|+++++++++.||+|++||+.+++
T Consensus 697 ~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~ 776 (1249)
T 3sfz_A 697 EHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSAN 776 (1249)
T ss_dssp CCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEECSSTTEEEEEESSSEEEEEEGGGTE
T ss_pred CCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEEEEecCCCEEEEEECCCeEEEEeCCCCc
Confidence 9999999999999 56689999999999999999999999999999999999999999999999999999999998764
Q ss_pred CCCcchh-h----hhHhh------------------------------------------hhcCCceeEEEEeecccccc
Q psy18231 282 HHPIQVR-C----LNEAL------------------------------------------KEARDSITSVHSLVKSTKNH 314 (540)
Q Consensus 282 ~~~~~~~-~----~~~~~------------------------------------------~~~~~~~~~~~~~~~~~~~~ 314 (540)
....... . ..... ..+...+. .+.+.+.+.
T Consensus 777 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~---~~~~sp~~~ 853 (1249)
T 3sfz_A 777 ERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQ---YCDFSPYDH 853 (1249)
T ss_dssp EEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCC---EEEECSSTT
T ss_pred ccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceE---EEEEcCCCC
Confidence 2110000 0 00000 00000000 011111100
Q ss_pred -cccCceeeEEEeee---------ecccccceeee----------eeccceeEEEee-----------------------
Q psy18231 315 -LSNGLLTKLVFAFR---------CKYLNGLLSGV----------LMSTQHLMVLLD----------------------- 351 (540)
Q Consensus 315 -~~~~~~~~~~~~~~---------~~~~~~~~~~~----------~~~~~~~~~~~~----------------------- 351 (540)
+..+.....+..|+ .......+..+ ..+.++.+.+|+
T Consensus 854 ~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~ 933 (1249)
T 3sfz_A 854 LAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQEN 933 (1249)
T ss_dssp EEEEECSSSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETT
T ss_pred EEEEEeCCCeEEEEEcCCCceeeecCCCccceEEEEECCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCC
Confidence 00000011111110 00111111111 111222233332
Q ss_pred -----------------------------------------------cccceecccccccccccchhhhhhcccccEEEE
Q psy18231 352 -----------------------------------------------FLGSTQIGDVTPISIHNSCFQALKEARDSITSV 384 (540)
Q Consensus 352 -----------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l 384 (540)
..+...+++... ......+.+|...|.++
T Consensus 934 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~----~~~~~~~~~h~~~v~~l 1009 (1249)
T 3sfz_A 934 ETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPN----NRVFSSGVGHKKAVRHI 1009 (1249)
T ss_dssp EEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTT----TSCEEECCCCSSCCCCE
T ss_pred CcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCC----CceeeecccCCCceEEE
Confidence 222222222221 22334566899999999
Q ss_pred EecC--CeeEeeeCCCeEEEEeCCCCceEEeee-CCceEEEEEecCCcEEEeecCCCeEEEEeccccchhhhhccCcCCc
Q psy18231 385 HVSD--HEILTASLDCRIRRYDIRTGNLVTDYV-GEPIVDACFTRDCQCILTCSTDECLRLFDKATGELLEEYKGHKSGD 461 (540)
Q Consensus 385 ~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v 461 (540)
+|+| +.+++++.||.|++||+.+++...... ...+.+++|+|++. +++++.||.|++||+.+++.+..+.+|...+
T Consensus 1010 ~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~-l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v 1088 (1249)
T 3sfz_A 1010 QFTADGKTLISSSEDSVIQVWNWQTGDYVFLQAHQETVKDFRLLQDSR-LLSWSFDGTVKVWNVITGRIERDFTCHQGTV 1088 (1249)
T ss_dssp EECSSSSCEEEECSSSBEEEEETTTTEEECCBCCSSCEEEEEECSSSE-EEEEESSSEEEEEETTTTCCCEEEECCSSCC
T ss_pred EECCCCCEEEEEcCCCEEEEEECCCCceEEEecCCCcEEEEEEcCCCc-EEEEECCCcEEEEECCCCceeEEEcccCCcE
Confidence 9998 789999999999999999988765443 36899999999765 6788899999999999999999999999999
Q ss_pred ceEEEEecCCCCeEEEeeCCCcEEEEEecCCcceeEEEecccceeeeEEEEcCCCcEEEeec-CCeeEEEEccccc
Q psy18231 462 FRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC-GNNVKLWTAEEDY 536 (540)
Q Consensus 462 ~~~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~-d~~i~iw~~~~~~ 536 (540)
..+ +|+|++++|++++.||+|++||+.+++++..+. +|...|++++|+|++++|++++ ||.|++||+.++.
T Consensus 1089 ~~~--~~s~d~~~l~s~s~d~~v~iwd~~~~~~~~~l~--~h~~~v~~~~~s~dg~~lat~~~dg~i~vwd~~~~~ 1160 (1249)
T 3sfz_A 1089 LSC--AISSDATKFSSTSADKTAKIWSFDLLSPLHELK--GHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQ 1160 (1249)
T ss_dssp CCE--EECSSSSSCEEECCSSCCCEECSSSSSCSBCCC--CCSSCEEEEEECSSSSEEEEEETTSCCCEEESSSSC
T ss_pred EEE--EECCCCCEEEEEcCCCcEEEEECCCcceeeeec--cCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCCCc
Confidence 888 899999999999999999999999999999888 8999999999999999999999 9999999998754
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-41 Score=324.93 Aligned_cols=282 Identities=14% Similarity=0.245 Sum_probs=240.2
Q ss_pred eeecCeEEEEeCCC----CCEEEEeeCCCcEEEEcCCCCeeEEEeec-----CCcceeEEEEeeC----CCeEEEeeCCC
Q psy18231 162 FVLSGLMHTRFPVD----GSYCLTCGSDKKIKLWNPYRNLLLKTYGG-----HAHEVNDATAACD----SSQIASGASDK 228 (540)
Q Consensus 162 ~h~~~v~~v~~spd----g~~lat~~~dg~i~iwd~~~~~~~~~~~~-----h~~~v~~l~~sp~----~~~l~s~s~dg 228 (540)
+|.++|++++|+|+ ...+++++.++.|++||+.+++.+..+.. |...|++++|+|+ +++|++++.||
T Consensus 16 ~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg 95 (366)
T 3k26_A 16 DHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRG 95 (366)
T ss_dssp TTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEETTC
T ss_pred CCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecCCC
Confidence 69999999999984 44566666678999999998887777754 5578999999998 67999999999
Q ss_pred eEEEEEcCCCceeEeccccCCceeEEEECC-CCCEEEEecCCCcEEEEEecCCCCCCcchhhhhHhhhhcCCceeEEEEe
Q psy18231 229 SVILWEVTTGQPVRRWREHASKVTCVKFNE-DSSVVISGSQDNTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSL 307 (540)
Q Consensus 229 ~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (540)
.|++||+.+++.+..+.+|...|.+++|+| ++++|++++.||.|++||+++++. ..
T Consensus 96 ~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~--~~--------------------- 152 (366)
T 3k26_A 96 IIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTL--VA--------------------- 152 (366)
T ss_dssp EEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEE--EE---------------------
T ss_pred EEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeE--EE---------------------
Confidence 999999999999999999999999999999 899999999999999999987641 00
Q ss_pred ecccccccccCceeeEEEeeeecccccceeeeeeccceeEEEeecccceecccccccccccchhhhhhcccccEEEEEec
Q psy18231 308 VKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEARDSITSVHVS 387 (540)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~ 387 (540)
....+..|...|.+++|+
T Consensus 153 --------------------------------------------------------------~~~~~~~~~~~v~~~~~~ 170 (366)
T 3k26_A 153 --------------------------------------------------------------IFGGVEGHRDEVLSADYD 170 (366)
T ss_dssp --------------------------------------------------------------EECSTTSCSSCEEEEEEC
T ss_pred --------------------------------------------------------------EecccccccCceeEEEEC
Confidence 001235788999999999
Q ss_pred C--CeeEeeeCCCeEEEEeCCCCceEEee------------------------------eCCceEEEEEecCCcEEEeec
Q psy18231 388 D--HEILTASLDCRIRRYDIRTGNLVTDY------------------------------VGEPIVDACFTRDCQCILTCS 435 (540)
Q Consensus 388 ~--~~l~~~~~dg~i~iwd~~~~~~~~~~------------------------------~~~~i~~~~~sp~~~~l~~~~ 435 (540)
| +.+++++.||.|++||+++++....+ +...|.+++|+ ++++++++
T Consensus 171 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~ 248 (366)
T 3k26_A 171 LLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GDLILSKS 248 (366)
T ss_dssp TTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TTEEEEEC
T ss_pred CCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--CCEEEEEe
Confidence 8 78999999999999999987654322 34679999998 77999999
Q ss_pred CCCeEEEEeccccch--------------hhhhccCcCCcceEEEEecCC--CCeEEEeeCCCcEEEEEecCCccee---
Q psy18231 436 TDECLRLFDKATGEL--------------LEEYKGHKSGDFRIECCLDSK--DSQIFCGSSDGKIYKWQLVDSSQIS--- 496 (540)
Q Consensus 436 ~dg~i~i~d~~~~~~--------------~~~~~~~~~~v~~~~~~~s~~--~~~l~s~s~dg~i~iwd~~~~~~~~--- 496 (540)
.|+.|++||+.+++. +..+..|...+..+ +|+|+ +++|++|+.||.|++||+.+++...
T Consensus 249 ~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~ 326 (366)
T 3k26_A 249 CENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYM--RFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKAKC 326 (366)
T ss_dssp SSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCC--CCEECTTSSEEEEECTTSCEEEEECCSSSGGGCEE
T ss_pred cCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEE--EEcCCCCCcEEEEEecCCcEEEEECCCCCCccccc
Confidence 999999999987754 66777888889888 67777 9999999999999999999887543
Q ss_pred -EEEeccc--ceeeeEEEEcCCCcEEEeec-CCeeEEEEccc
Q psy18231 497 -TLIHSVG--KAVVNSLCSHPTRKHIMSAC-GNNVKLWTAEE 534 (540)
Q Consensus 497 -~~~~~~~--~~~v~~l~~s~d~~~l~s~~-d~~i~iw~~~~ 534 (540)
.+. .| ...|++++|+|++++|++++ ||.|++||+.+
T Consensus 327 ~~~~--~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~ 366 (366)
T 3k26_A 327 TTLT--HHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDRLR 366 (366)
T ss_dssp EEEC--CTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC--
T ss_pred eEEc--ccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEecC
Confidence 555 55 79999999999999999999 99999999853
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-41 Score=330.63 Aligned_cols=292 Identities=15% Similarity=0.231 Sum_probs=252.1
Q ss_pred eeecCeEEEEeCCCCC-EEEEe----------eCCCcEEEEcCCCCe---eEEEeecCCcceeEEEEeeCCCeEEEeeCC
Q psy18231 162 FVLSGLMHTRFPVDGS-YCLTC----------GSDKKIKLWNPYRNL---LLKTYGGHAHEVNDATAACDSSQIASGASD 227 (540)
Q Consensus 162 ~h~~~v~~v~~spdg~-~lat~----------~~dg~i~iwd~~~~~---~~~~~~~h~~~v~~l~~sp~~~~l~s~s~d 227 (540)
.+...|.+++|+|+++ +|++| +.|+.|++||+.++. .+..+ .|...|++++|+|++++|++++.|
T Consensus 10 ~~~~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~d 88 (416)
T 2pm9_A 10 AEFSRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASL-QVDSKFNDLDWSHNNKIIAGALDN 88 (416)
T ss_dssp CEEEESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCC-CCSSCEEEEEECSSSSCEEEEESS
T ss_pred hhhhhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEE-ecCCceEEEEECCCCCeEEEEccC
Confidence 3556799999999997 99999 889999999998875 34444 489999999999999999999999
Q ss_pred CeEEEEEcCC----CceeEeccccCCceeEEEECCC-CCEEEEecCCCcEEEEEecCCCCCCcchhhhhHhhhhcCCcee
Q psy18231 228 KSVILWEVTT----GQPVRRWREHASKVTCVKFNED-SSVVISGSQDNTVMMWDVKSRSHHPIQVRCLNEALKEARDSIT 302 (540)
Q Consensus 228 g~i~iwd~~~----~~~~~~~~~h~~~v~~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (540)
|.|++||+.+ .+.+..+.+|...|.+++|+|+ +++|++++.||.|++||+.+.+......
T Consensus 89 g~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~--------------- 153 (416)
T 2pm9_A 89 GSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNY--------------- 153 (416)
T ss_dssp SCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTC---------------
T ss_pred CeEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccc---------------
Confidence 9999999988 4578888999999999999998 8999999999999999998765211000
Q ss_pred EEEEeecccccccccCceeeEEEeeeecccccceeeeeeccceeEEEeecccceecccccccccccchhhhhhcccccEE
Q psy18231 303 SVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEARDSIT 382 (540)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 382 (540)
..........|...|.
T Consensus 154 ----------------------------------------------------------------~~~~~~~~~~~~~~v~ 169 (416)
T 2pm9_A 154 ----------------------------------------------------------------TPLTPGQSMSSVDEVI 169 (416)
T ss_dssp ----------------------------------------------------------------CCBCCCCSCCSSCCCC
T ss_pred ----------------------------------------------------------------cccccccccCCCCCee
Confidence 0000113456888999
Q ss_pred EEEecC---CeeEeeeCCCeEEEEeCCCCceEEeeeC--------CceEEEEEecCC-cEEEeecCCC---eEEEEeccc
Q psy18231 383 SVHVSD---HEILTASLDCRIRRYDIRTGNLVTDYVG--------EPIVDACFTRDC-QCILTCSTDE---CLRLFDKAT 447 (540)
Q Consensus 383 ~l~~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~~--------~~i~~~~~sp~~-~~l~~~~~dg---~i~i~d~~~ 447 (540)
+++|+| .++++++.||.|++||+++++.+..+.. ..+.+++|+|++ .++++++.|+ .|++||+++
T Consensus 170 ~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~ 249 (416)
T 2pm9_A 170 SLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRN 249 (416)
T ss_dssp EEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTS
T ss_pred EEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCC
Confidence 999997 5799999999999999999988877753 569999999997 6899999998 999999998
Q ss_pred c-chhhhhc-cCcCCcceEEEEecC-CCCeEEEeeCCCcEEEEEecCCcceeEEEecccceeeeEEEEcCCC-cEEEeec
Q psy18231 448 G-ELLEEYK-GHKSGDFRIECCLDS-KDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTR-KHIMSAC 523 (540)
Q Consensus 448 ~-~~~~~~~-~~~~~v~~~~~~~s~-~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~-~~l~s~~ 523 (540)
+ +.+..+. +|...+..+ +|+| ++++|++++.||.|++||+.+++++..+. .|...|.+++|+|++ .+|++++
T Consensus 250 ~~~~~~~~~~~~~~~v~~~--~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~--~~~~~v~~~~~s~~~~~~l~s~~ 325 (416)
T 2pm9_A 250 ANTPLQTLNQGHQKGILSL--DWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFP--ARGNWCFKTKFAPEAPDLFACAS 325 (416)
T ss_dssp TTSCSBCCCSCCSSCEEEE--EECSSCSSCEEEEESSSEEEEECSSSCCEEEEEE--CSSSCCCCEEECTTCTTEEEECC
T ss_pred CCCCcEEeecCccCceeEE--EeCCCCCCeEEEEeCCCCEEEeeCCCCccceeec--CCCCceEEEEECCCCCCEEEEEe
Confidence 6 6778888 899988888 8999 89999999999999999999999999998 899999999999999 8999999
Q ss_pred -CCeeEEEEcccccC
Q psy18231 524 -GNNVKLWTAEEDYG 537 (540)
Q Consensus 524 -d~~i~iw~~~~~~~ 537 (540)
|+.|++|++.+...
T Consensus 326 ~d~~i~iw~~~~~~~ 340 (416)
T 2pm9_A 326 FDNKIEVQTLQNLTN 340 (416)
T ss_dssp SSSEEEEEESCCCCC
T ss_pred cCCcEEEEEccCCCC
Confidence 99999999987643
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.1e-41 Score=318.10 Aligned_cols=280 Identities=18% Similarity=0.262 Sum_probs=229.2
Q ss_pred ceeccccchhhhhhcccccceeeeecccccce------eeeeecCeEEEEeCCCCCEEEEeeCCCcEEEEcCCCC--eeE
Q psy18231 128 LLFSLPRTITRILYELPKEWSIRVYRPLTVNR------ELFVLSGLMHTRFPVDGSYCLTCGSDKKIKLWNPYRN--LLL 199 (540)
Q Consensus 128 ~~~s~~~~~~~~~~~~~~~~~i~~~~~~~~~~------~~~h~~~v~~v~~spdg~~lat~~~dg~i~iwd~~~~--~~~ 199 (540)
+.|+++ ..++++++.|++|++|+...... ..+|.+.|.+++|+|+|++|++|+.|++|++||..++ +.+
T Consensus 22 l~~sp~---g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~~~~~ 98 (345)
T 3fm0_A 22 LAWNPA---GTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECV 98 (345)
T ss_dssp EEECTT---SSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSCEEEEEECCC-EEEE
T ss_pred EEECCC---CCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCCcEEEEEccCCCeEEE
Confidence 455555 35677889999999999876431 1369999999999999999999999999999998776 467
Q ss_pred EEeecCCcceeEEEEeeCCCeEEEeeCCCeEEEEEcCCCc---eeEeccccCCceeEEEECCCCCEEEEecCCCcEEEEE
Q psy18231 200 KTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQ---PVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWD 276 (540)
Q Consensus 200 ~~~~~h~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~---~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd 276 (540)
..+.+|...|.+++|+|++++|++++.|++|++||+.++. .+..+.+|...|.+++|+|++++|++++.|++|++||
T Consensus 99 ~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~ 178 (345)
T 3fm0_A 99 TTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYR 178 (345)
T ss_dssp EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSSSCEEEEETTSCEEEEE
T ss_pred EEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCCCEEEEEeCCCcEEEEE
Confidence 8889999999999999999999999999999999998764 4566789999999999999999999999999999999
Q ss_pred ecCCCCCCcchhhhhHhhhhcCCceeEEEEeecccccccccCceeeEEEeeeecccccceeeeeeccceeEEEeecccce
Q psy18231 277 VKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGST 356 (540)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (540)
+++++..
T Consensus 179 ~~~~~~~------------------------------------------------------------------------- 185 (345)
T 3fm0_A 179 EEEDDWV------------------------------------------------------------------------- 185 (345)
T ss_dssp EETTEEE-------------------------------------------------------------------------
T ss_pred ecCCCEE-------------------------------------------------------------------------
Confidence 8765310
Q ss_pred ecccccccccccchhhhhhcccccEEEEEecC--CeeEeeeCCCeEEEEeCCCC---------------ceEEeee---C
Q psy18231 357 QIGDVTPISIHNSCFQALKEARDSITSVHVSD--HEILTASLDCRIRRYDIRTG---------------NLVTDYV---G 416 (540)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~--~~l~~~~~dg~i~iwd~~~~---------------~~~~~~~---~ 416 (540)
+...+.+|...|.+++|+| ++|++++.|++|++||.... +++..+. .
T Consensus 186 -------------~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 252 (345)
T 3fm0_A 186 -------------CCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHS 252 (345)
T ss_dssp -------------EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCS
T ss_pred -------------EEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccceeeccCCccceeEEecCCCC
Confidence 1114567899999999998 78999999999999996422 2233333 3
Q ss_pred CceEEEEEecCCcEEEeecCCCeEEEEeccccch---------hhhhccCcCCcceEEEEecCCCC-eEEEeeCCCcEEE
Q psy18231 417 EPIVDACFTRDCQCILTCSTDECLRLFDKATGEL---------LEEYKGHKSGDFRIECCLDSKDS-QIFCGSSDGKIYK 486 (540)
Q Consensus 417 ~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~---------~~~~~~~~~~v~~~~~~~s~~~~-~l~s~s~dg~i~i 486 (540)
..|.+++|+|++..|++++.|+.|++|+...... .....+|...|.++ +|+|++. +||+|+.||+|++
T Consensus 253 ~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v--~~~p~~~~~laS~s~Dg~v~~ 330 (345)
T 3fm0_A 253 RTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCV--AWNPKEPGLLASCSDDGEVAF 330 (345)
T ss_dssp SCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEE--EECSSSTTEEEEEETTSCEEE
T ss_pred CcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecccccCcEeEe--EEeCCCceEEEEcCCCCcEEE
Confidence 5799999999999999999999999999875432 12345788888888 8999984 8999999999999
Q ss_pred EEecCCcceeEE
Q psy18231 487 WQLVDSSQISTL 498 (540)
Q Consensus 487 wd~~~~~~~~~~ 498 (540)
|++.+++.....
T Consensus 331 W~~~~~~~~~~~ 342 (345)
T 3fm0_A 331 WKYQRPEGLHHH 342 (345)
T ss_dssp EEECC-------
T ss_pred EEecCCCCcccc
Confidence 999888776554
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-40 Score=309.66 Aligned_cols=275 Identities=21% Similarity=0.283 Sum_probs=242.6
Q ss_pred eeeeecCeEEEEeCCCCCEEEEeeCCCcEEEEcCCCCeeEEEeecCCcceeEEEEeeCCCeEEEeeCCCeEEEEEcCCC-
Q psy18231 160 ELFVLSGLMHTRFPVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTG- 238 (540)
Q Consensus 160 ~~~h~~~v~~v~~spdg~~lat~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~- 238 (540)
..+|.+.|++++| |++++|++++.||.|++||+.+++....+..|...|.+++|+|++++|++++.||.|++|++...
T Consensus 14 l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~ 92 (313)
T 3odt_A 14 LKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMINGVPLFATS 92 (313)
T ss_dssp ECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSEEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEEEEETTCCT
T ss_pred hhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEEEeecCCccEEEEEECCCCCEEEEecCCCeEEEEEeeecC
Confidence 4579999999999 99999999999999999999999999999999999999999999999999999999999998765
Q ss_pred --ceeEeccccCCceeEEEECCCCCEEEEecCCCcEEEEEecCCCCCCcchhhhhHhhhhcCCceeEEEEeecccccccc
Q psy18231 239 --QPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHLS 316 (540)
Q Consensus 239 --~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (540)
+.+..+.+|...|.++.| +++++++++.||.|++|| ..+
T Consensus 93 ~~~~~~~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d--~~~----------------------------------- 133 (313)
T 3odt_A 93 GEDPLYTLIGHQGNVCSLSF--QDGVVISGSWDKTAKVWK--EGS----------------------------------- 133 (313)
T ss_dssp TSCC-CEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEE--TTE-----------------------------------
T ss_pred CCCcccchhhcccCEEEEEe--cCCEEEEEeCCCCEEEEc--CCc-----------------------------------
Confidence 556778899999999999 577999999999999999 221
Q ss_pred cCceeeEEEeeeecccccceeeeeeccceeEEEeecccceecccccccccccchhhhhhcccccEEEEEecC---CeeEe
Q psy18231 317 NGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEARDSITSVHVSD---HEILT 393 (540)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~---~~l~~ 393 (540)
....+..|...+.++.+.+ +.+++
T Consensus 134 -----------------------------------------------------~~~~~~~~~~~v~~~~~~~~~~~~l~~ 160 (313)
T 3odt_A 134 -----------------------------------------------------LVYNLQAHNASVWDAKVVSFSENKFLT 160 (313)
T ss_dssp -----------------------------------------------------EEEEEECCSSCEEEEEEEETTTTEEEE
T ss_pred -----------------------------------------------------EEEecccCCCceeEEEEccCCCCEEEE
Confidence 0114456788899998865 88999
Q ss_pred eeCCCeEEEEeCCCCceEEeee---CCceEEEEEecCCcEEEeecCCCeEEEEeccccchhhhhccCcCCcceEEEEecC
Q psy18231 394 ASLDCRIRRYDIRTGNLVTDYV---GEPIVDACFTRDCQCILTCSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLDS 470 (540)
Q Consensus 394 ~~~dg~i~iwd~~~~~~~~~~~---~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~s~ 470 (540)
++.||.|++||. .+....+. ...+.+++|+|++. +++++.||.|++||+++++.+..+.+|...+..+ +|+|
T Consensus 161 ~~~d~~i~i~d~--~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~--~~~~ 235 (313)
T 3odt_A 161 ASADKTIKLWQN--DKVIKTFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLRTYEGHESFVYCI--KLLP 235 (313)
T ss_dssp EETTSCEEEEET--TEEEEEECSSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCCEEEEEECCSSCEEEE--EECT
T ss_pred EECCCCEEEEec--CceEEEEeccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCchhhhhhhhcCCceEEEE--EEec
Confidence 999999999994 44444443 46899999999999 9999999999999999999999999999999888 8999
Q ss_pred CCCeEEEeeCCCcEEEEEecCCcceeEEEecccceeeeEEEEcCCCcEEEeec-CCeeEEEEccccc
Q psy18231 471 KDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC-GNNVKLWTAEEDY 536 (540)
Q Consensus 471 ~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~-d~~i~iw~~~~~~ 536 (540)
++ .|++++.||.|++||+.+++.+..+. .|...|.+++|+|+++++ +++ ||.|++|+++++.
T Consensus 236 ~~-~l~~~~~dg~v~iwd~~~~~~~~~~~--~~~~~i~~~~~~~~~~~~-~~~~dg~i~iw~~~~~~ 298 (313)
T 3odt_A 236 NG-DIVSCGEDRTVRIWSKENGSLKQVIT--LPAISIWSVDCMSNGDII-VGSSDNLVRIFSQEKSR 298 (313)
T ss_dssp TS-CEEEEETTSEEEEECTTTCCEEEEEE--CSSSCEEEEEECTTSCEE-EEETTSCEEEEESCGGG
T ss_pred CC-CEEEEecCCEEEEEECCCCceeEEEe--ccCceEEEEEEccCCCEE-EEeCCCcEEEEeCCCCc
Confidence 99 69999999999999999999999998 889999999999999955 566 9999999998764
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7.9e-40 Score=336.98 Aligned_cols=387 Identities=14% Similarity=0.171 Sum_probs=284.2
Q ss_pred cceecc--ccchhhhhhcccccceeeeeccccc--------c---eeeeeecCeEEEEeCCCCCEEEEeeCC----CcEE
Q psy18231 127 PLLFSL--PRTITRILYELPKEWSIRVYRPLTV--------N---RELFVLSGLMHTRFPVDGSYCLTCGSD----KKIK 189 (540)
Q Consensus 127 ~~~~s~--~~~~~~~~~~~~~~~~i~~~~~~~~--------~---~~~~h~~~v~~v~~spdg~~lat~~~d----g~i~ 189 (540)
.+.|++ + ...++.++.++.|++|+..+. . ....|..+|.+++|+|++++|++++.+ +.|.
T Consensus 69 ~~~~sp~~~---~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~ 145 (615)
T 1pgu_A 69 TVKFSPIKG---SQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFI 145 (615)
T ss_dssp EEEECSSTT---CCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEE
T ss_pred EEEECcCCC---CCEEEEecCCCEEEEEeCCCCcccccccccccchhhcccccEEEEEEeCCCCEEEEeccCCCCccEEE
Confidence 445555 4 346677788999999999633 1 223488999999999999999999987 7899
Q ss_pred EEcCCCCeeEEEeecCCcceeEEEEeeCCC-eEEEeeCCCeEEEEEcCCCceeEeccccCC---ceeEEEECCC-CCEEE
Q psy18231 190 LWNPYRNLLLKTYGGHAHEVNDATAACDSS-QIASGASDKSVILWEVTTGQPVRRWREHAS---KVTCVKFNED-SSVVI 264 (540)
Q Consensus 190 iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~-~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~---~v~~~~~~~~-~~~l~ 264 (540)
+|| +++.+..+.+|...|.+++|+|+++ ++++++.|+.|++||+.+++.+..+.+|.. .|.+++|+|+ +++|+
T Consensus 146 ~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~ 223 (615)
T 1pgu_A 146 SWD--SGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVI 223 (615)
T ss_dssp ETT--TCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEE
T ss_pred EEE--CCCcceeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEE
Confidence 998 6778889999999999999999998 799999999999999999999999999999 9999999999 99999
Q ss_pred EecCCCcEEEEEecCCCCCCcchhhhhHhhhhcCCceeEEEEeecccccccccCceeeEEEeeeeccc------------
Q psy18231 265 SGSQDNTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYL------------ 332 (540)
Q Consensus 265 s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------ 332 (540)
+++.||.|++||+++++....... ....+...+..+. +.....+..+.....+..|+....
T Consensus 224 ~~~~dg~i~vwd~~~~~~~~~~~~----~~~~~~~~v~~~~---~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~ 296 (615)
T 1pgu_A 224 TVGSDRKISCFDGKSGEFLKYIED----DQEPVQGGIFALS---WLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQ 296 (615)
T ss_dssp EEETTCCEEEEETTTCCEEEECCB----TTBCCCSCEEEEE---ESSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTC
T ss_pred EEeCCCeEEEEECCCCCEeEEecc----cccccCCceEEEE---EcCCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCc
Confidence 999999999999988763111100 0002222333332 222222333333333333332211
Q ss_pred -ccceeeeeeccceeEEEeecccceecccccccccccchhhhh---------------------------------hccc
Q psy18231 333 -NGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQAL---------------------------------KEAR 378 (540)
Q Consensus 333 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------------~~~~ 378 (540)
...........+..+......+...+++..... ....+ ..|.
T Consensus 297 ~~~~~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~----~~~~~~~~~~~v~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~ 372 (615)
T 1pgu_A 297 LGNQQVGVVATGNGRIISLSLDGTLNFYELGHDE----VLKTISGHNKGITALTVNPLISGSYDGRIMEWSSSSMHQDHS 372 (615)
T ss_dssp GGGCEEEEEEEETTEEEEEETTSCEEEEETTEEE----EEEEECCCSSCEEEEETTTTEEEETTSCEEETTTTEEECCCC
T ss_pred ccCceeEEEeCCCCeEEEEECCCCEEEEECCCCc----EEEEEeCCCCCEEEEEecCcEEECCCCeEEEEEchhhcCccc
Confidence 111222222233333333333333333322110 00111 4567
Q ss_pred ccEEEEEecC-CeeEeeeCCCeEEEEeCCC----------------------------------CceEEeee-CCceEEE
Q psy18231 379 DSITSVHVSD-HEILTASLDCRIRRYDIRT----------------------------------GNLVTDYV-GEPIVDA 422 (540)
Q Consensus 379 ~~v~~l~~~~-~~l~~~~~dg~i~iwd~~~----------------------------------~~~~~~~~-~~~i~~~ 422 (540)
..|.++++.+ ..+++++.|+.+++||+.+ ++.+..+. ...+.++
T Consensus 373 ~~v~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 452 (615)
T 1pgu_A 373 NLIVSLDNSKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAV 452 (615)
T ss_dssp SCEEEEECCSTTCCEEEETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEE
T ss_pred CceEEEEECCCcEEEEEeCCCCEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecccCCCceEE
Confidence 7788888865 7788888888888887753 22333332 3578888
Q ss_pred EEecCCcEEEeecC-CCeEEEEeccccchh-hhhccCcCCcceEEEEecCCCCeEEEeeCCCcEEEEEecCCcceeEEEe
Q psy18231 423 CFTRDCQCILTCST-DECLRLFDKATGELL-EEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIH 500 (540)
Q Consensus 423 ~~sp~~~~l~~~~~-dg~i~i~d~~~~~~~-~~~~~~~~~v~~~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~ 500 (540)
+|+ +++|++++. |+.|++||+.+++.. ..+..|...+..+ +|+|++++|++++.||.|++||+.+++.+..+.
T Consensus 453 ~~~--~~~l~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~v~~~--~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~- 527 (615)
T 1pgu_A 453 SLS--QNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYI--SISPSETYIAAGDVMGKILLYDLQSREVKTSRW- 527 (615)
T ss_dssp EEC--SSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEE--EECTTSSEEEEEETTSCEEEEETTTTEEEECCS-
T ss_pred EEc--CCEEEEeecCCCeEEEEECCCccccccccCCccCceEEE--EECCCCCEEEEcCCCCeEEEeeCCCCcceeEee-
Confidence 888 889999999 999999999988765 7778899988887 899999999999999999999999999988876
Q ss_pred cc-cceeeeEEEEcC----------CCcEEEeec-CCeeEEEEcccc
Q psy18231 501 SV-GKAVVNSLCSHP----------TRKHIMSAC-GNNVKLWTAEED 535 (540)
Q Consensus 501 ~~-~~~~v~~l~~s~----------d~~~l~s~~-d~~i~iw~~~~~ 535 (540)
+ |...|++++|+| ++++|++++ |+.|++|+++++
T Consensus 528 -~~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~ 573 (615)
T 1pgu_A 528 -AFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRP 573 (615)
T ss_dssp -CCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCT
T ss_pred -cCCCCceeEEEEcCccccccccccCCCEEEEEcCCCcEEEEECCCC
Confidence 6 999999999999 999999999 999999999875
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-39 Score=321.80 Aligned_cols=299 Identities=20% Similarity=0.375 Sum_probs=262.5
Q ss_pred hhhhcccccceeeeecccccce---eeeeecCeEEEEeCCCCCEEEEeeCCCcEEEEcCCCCeeEEEeecCCcceeEEEE
Q psy18231 138 RILYELPKEWSIRVYRPLTVNR---ELFVLSGLMHTRFPVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATA 214 (540)
Q Consensus 138 ~~~~~~~~~~~i~~~~~~~~~~---~~~h~~~v~~v~~spdg~~lat~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~ 214 (540)
..+++++.+++|++|+..+... ..+|.+.|.+++|+ +++|++|+.||+|++||+.+++.+..+.+|...|.+++|
T Consensus 130 ~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~ 207 (445)
T 2ovr_B 130 NRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMR--DNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHL 207 (445)
T ss_dssp TEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEE
T ss_pred CEEEEEECCCcEEEEECCCCcEEEEEcCCCCCEEEEEec--CCEEEEEeCCCeEEEEECCcCcEEEEECCCCCcEEEEEe
Confidence 4667788999999999877553 34599999999997 569999999999999999999999999999999999999
Q ss_pred eeCCCeEEEeeCCCeEEEEEcCCCceeEeccccCCceeEEEECCCCCEEEEecCCCcEEEEEecCCCCCCcchhhhhHhh
Q psy18231 215 ACDSSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQVRCLNEAL 294 (540)
Q Consensus 215 sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 294 (540)
+ ++.+++++.||+|++||+.+++.+..+.+|...|.+++| +++++++++.||.|++||+++++.
T Consensus 208 ~--~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~------------ 271 (445)
T 2ovr_B 208 H--EKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETETC------------ 271 (445)
T ss_dssp E--TTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEE--CSSCEEEEETTSCEEEEEGGGTEE------------
T ss_pred c--CCEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEE--CCCEEEEEcCCCEEEEEECCCCcE------------
Confidence 5 678999999999999999999999999999999999999 678999999999999999887641
Q ss_pred hhcCCceeEEEEeecccccccccCceeeEEEeeeecccccceeeeeeccceeEEEeecccceecccccccccccchhhhh
Q psy18231 295 KEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQAL 374 (540)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (540)
+..+
T Consensus 272 ----------------------------------------------------------------------------~~~~ 275 (445)
T 2ovr_B 272 ----------------------------------------------------------------------------LHTL 275 (445)
T ss_dssp ----------------------------------------------------------------------------EEEE
T ss_pred ----------------------------------------------------------------------------eEEe
Confidence 1144
Q ss_pred hcccccEEEEEecCCeeEeeeCCCeEEEEeCCCCceEEeeeCC--ceEEEEEecCCcEEEeecCCCeEEEEeccccchhh
Q psy18231 375 KEARDSITSVHVSDHEILTASLDCRIRRYDIRTGNLVTDYVGE--PIVDACFTRDCQCILTCSTDECLRLFDKATGELLE 452 (540)
Q Consensus 375 ~~~~~~v~~l~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~--~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~ 452 (540)
.+|...|.++.+++..+++++.||.|++||+++++.+..+.++ .+.++. ++++++++++.||.|++||+++++.+.
T Consensus 276 ~~~~~~v~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~--~~~~~l~~~~~dg~i~vwd~~~~~~~~ 353 (445)
T 2ovr_B 276 QGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGME--LKDNILVSGNADSTVKIWDIKTGQCLQ 353 (445)
T ss_dssp CCCSSCEEEEEECSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEE--EETTEEEEEETTSCEEEEETTTCCEEE
T ss_pred cCCCCceEEEEECCCEEEEEeCCCeEEEEECCCCCEEEEEcCCcccEEEEE--EeCCEEEEEeCCCeEEEEECCCCcEEE
Confidence 5788899999998899999999999999999999999888765 455555 467899999999999999999999888
Q ss_pred hhcc---CcCCcceEEEEecCCCCeEEEeeCCCcEEEEEecCCcceeEEEe---cccceeeeEEEEcCCCcEEEeec-CC
Q psy18231 453 EYKG---HKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIH---SVGKAVVNSLCSHPTRKHIMSAC-GN 525 (540)
Q Consensus 453 ~~~~---~~~~v~~~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~---~~~~~~v~~l~~s~d~~~l~s~~-d~ 525 (540)
.+.. |...+.++ +|+ +++|++|+.||.|++||+.+++.+..+.. ..|.+.|.+++|+|++.+|++++ ||
T Consensus 354 ~~~~~~~~~~~v~~~--~~~--~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~la~~~~dg 429 (445)
T 2ovr_B 354 TLQGPNKHQSAVTCL--QFN--KNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNG 429 (445)
T ss_dssp EECSTTSCSSCEEEE--EEC--SSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSS
T ss_pred EEccCCCCCCCEEEE--EEC--CCEEEEEeCCCeEEEEECCCCceeeeeeccccCCCCceEEEEEecCCEEEEEEcccCC
Confidence 8876 77777766 564 67999999999999999999999888831 26889999999999999999999 99
Q ss_pred e----eEEEEccccc
Q psy18231 526 N----VKLWTAEEDY 536 (540)
Q Consensus 526 ~----i~iw~~~~~~ 536 (540)
+ |.+||++.+.
T Consensus 430 ~~~~~l~v~df~~~~ 444 (445)
T 2ovr_B 430 TEETKLLVLDFDVDM 444 (445)
T ss_dssp SSCCEEEEEECCCCC
T ss_pred CCccEEEEEECCCCC
Confidence 7 9999998764
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-39 Score=322.31 Aligned_cols=303 Identities=19% Similarity=0.309 Sum_probs=253.2
Q ss_pred eeeeeecCe-EEEEeCCCCCEEEEeeCCCcEEEEcCCCCeeEEEeecCCcceeEEEEeeCCCeEEEeeCCCeEEEEEcCC
Q psy18231 159 RELFVLSGL-MHTRFPVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTT 237 (540)
Q Consensus 159 ~~~~h~~~v-~~v~~spdg~~lat~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~ 237 (540)
...+|.+.+ .++.| ++++|++|+.||+|++||+.+++.+..+.+|.+.|++++|+|++ +|++|+.||+|++||+++
T Consensus 116 ~l~~h~~~v~~~~~~--~~~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~~ 192 (464)
T 3v7d_B 116 TLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKK 192 (464)
T ss_dssp EEECCSSSCEEEEEE--ETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSTT-EEEEEETTSCEEEEETTT
T ss_pred EEcCCCCCcEEEEEE--CCCEEEEEcCCCcEEEEECCCCcEEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEEECCC
Confidence 345688775 66665 56799999999999999999999999999999999999999988 999999999999999999
Q ss_pred CceeEeccccCCceeEEEEC--CCCCEEEEecCCCcEEEEEecCCCCCCcchhhhhHhhhhcCCceeEEEEeeccccccc
Q psy18231 238 GQPVRRWREHASKVTCVKFN--EDSSVVISGSQDNTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHL 315 (540)
Q Consensus 238 ~~~~~~~~~h~~~v~~~~~~--~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (540)
++.+..+.+|.+.|.+++|+ ++++++++++.||+|++||+++........... ..
T Consensus 193 ~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~---------~~-------------- 249 (464)
T 3v7d_B 193 GCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEH---------DY-------------- 249 (464)
T ss_dssp TEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------C---------CS--------------
T ss_pred CcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccC---------Cc--------------
Confidence 99999999999999999998 577899999999999999998876321110000 00
Q ss_pred ccCceeeEEEeeeecccccceeeeeeccceeEEEeecccceecccccccccccchhhhhhcccccEEEEEecCCeeEeee
Q psy18231 316 SNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEARDSITSVHVSDHEILTAS 395 (540)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~ 395 (540)
....... .........+.+|...+.++..+++.+++++
T Consensus 250 ------------------------------~~~~~~~------------~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~ 287 (464)
T 3v7d_B 250 ------------------------------PLVFHTP------------EENPYFVGVLRGHMASVRTVSGHGNIVVSGS 287 (464)
T ss_dssp ------------------------------SEEESCG------------GGCTTEEEEECCCSSCEEEEEEETTEEEEEE
T ss_pred ------------------------------ceEeecc------------CCCeEEEEEccCccceEEEEcCCCCEEEEEe
Confidence 0000000 0000112255678889999988889999999
Q ss_pred CCCeEEEEeCCCCceEEeeeC--CceEEEEEecCCcEEEeecCCCeEEEEeccccchhhhhccCcCCcceEEEEecCCCC
Q psy18231 396 LDCRIRRYDIRTGNLVTDYVG--EPIVDACFTRDCQCILTCSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDS 473 (540)
Q Consensus 396 ~dg~i~iwd~~~~~~~~~~~~--~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~s~~~~ 473 (540)
.||.|++||+++++.+..+.+ ..|.+++|+|+++++++++.||.|++||+++++.+..+.+|...+..+ +++ ++
T Consensus 288 ~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~--~~~--~~ 363 (464)
T 3v7d_B 288 YDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLL--RLS--DK 363 (464)
T ss_dssp TTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEE--EEC--SS
T ss_pred CCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCcEEEE--EEc--CC
Confidence 999999999999999888875 579999999999999999999999999999999999999999998877 665 57
Q ss_pred eEEEeeCCCcEEEEEecCCcceeEEEecccceeeeEEEEcCCCcEEEeecCCeeEEEEccccc
Q psy18231 474 QIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDY 536 (540)
Q Consensus 474 ~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~d~~i~iw~~~~~~ 536 (540)
+|++++.||.|++||+.+++...... |...+..++|+|++++|++++|+.|++||++++.
T Consensus 364 ~l~s~s~dg~v~vwd~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~dg~i~iwd~~~g~ 423 (464)
T 3v7d_B 364 FLVSAAADGSIRGWDANDYSRKFSYH---HTNLSAITTFYVSDNILVSGSENQFNIYNLRSGK 423 (464)
T ss_dssp EEEEEETTSEEEEEETTTCCEEEEEE---CTTCCCEEEEEECSSEEEEEETTEEEEEETTTCC
T ss_pred EEEEEeCCCcEEEEECCCCceeeeec---CCCCccEEEEEeCCCEEEEecCCeEEEEECCCCc
Confidence 99999999999999999888766664 6777889999999999999989999999998753
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.8e-40 Score=309.28 Aligned_cols=264 Identities=18% Similarity=0.250 Sum_probs=211.8
Q ss_pred hhhcccccceeeeecccccc----ee--ee-eecCeEEEEeCCCCCEEEEeeCCCcEEEEcCC-------CCeeEEEeec
Q psy18231 139 ILYELPKEWSIRVYRPLTVN----RE--LF-VLSGLMHTRFPVDGSYCLTCGSDKKIKLWNPY-------RNLLLKTYGG 204 (540)
Q Consensus 139 ~~~~~~~~~~i~~~~~~~~~----~~--~~-h~~~v~~v~~spdg~~lat~~~dg~i~iwd~~-------~~~~~~~~~~ 204 (540)
++++++.+++|++|+..... .. .. |.+.|.+++|+|++++|++|+.|++|+|||+. +.+.+..+.+
T Consensus 26 ~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~ 105 (330)
T 2hes_X 26 ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEG 105 (330)
T ss_dssp EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTSCEEEEEC-------CCCEEEEEEC-
T ss_pred EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcC
Confidence 67888999999999987531 11 23 99999999999999999999999999999984 3456778899
Q ss_pred CCcceeEEEEeeCCCeEEEeeCCCeEEEEEcCCC----ceeEeccccCCceeEEEECCCCCEEEEecCCCcEEEEEecCC
Q psy18231 205 HAHEVNDATAACDSSQIASGASDKSVILWEVTTG----QPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSR 280 (540)
Q Consensus 205 h~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~----~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~ 280 (540)
|...|.+++|+|++++|++++.|++|++||+... +++..+.+|...|.+++|+|++++|++++.|++|++||..++
T Consensus 106 h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~ 185 (330)
T 2hes_X 106 HENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDD 185 (330)
T ss_dssp ---CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETT
T ss_pred CCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCC
Confidence 9999999999999999999999999999999432 456778899999999999999999999999999999998754
Q ss_pred CCCCcchhhhhHhhhhcCCceeEEEEeecccccccccCceeeEEEeeeecccccceeeeeeccceeEEEeecccceeccc
Q psy18231 281 SHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGD 360 (540)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (540)
...
T Consensus 186 ~~~----------------------------------------------------------------------------- 188 (330)
T 2hes_X 186 DWE----------------------------------------------------------------------------- 188 (330)
T ss_dssp EEE-----------------------------------------------------------------------------
T ss_pred Cee-----------------------------------------------------------------------------
Confidence 210
Q ss_pred ccccccccchhhhhhcccccEEEEEecCC----eeEeeeCCCeEEEEeCCCC--------ceEEeee---CCceEEEEEe
Q psy18231 361 VTPISIHNSCFQALKEARDSITSVHVSDH----EILTASLDCRIRRYDIRTG--------NLVTDYV---GEPIVDACFT 425 (540)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~v~~l~~~~~----~l~~~~~dg~i~iwd~~~~--------~~~~~~~---~~~i~~~~~s 425 (540)
++..+.+|...|.+++|+|. .+++++.|++|++||++++ .....+. ...|.+++|+
T Consensus 189 ---------~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s 259 (330)
T 2hes_X 189 ---------CVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWG 259 (330)
T ss_dssp ---------EEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEEC
T ss_pred ---------EEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeEEeeecccccccceEEEEEc
Confidence 12256689999999999983 6899999999999998764 2333332 3579999999
Q ss_pred cCCcEEEeecCCCeEEEEeccccc--hh-hhhccCcC-CcceEEEEecC--CCCeEEEeeCCCcEEEEEecC
Q psy18231 426 RDCQCILTCSTDECLRLFDKATGE--LL-EEYKGHKS-GDFRIECCLDS--KDSQIFCGSSDGKIYKWQLVD 491 (540)
Q Consensus 426 p~~~~l~~~~~dg~i~i~d~~~~~--~~-~~~~~~~~-~v~~~~~~~s~--~~~~l~s~s~dg~i~iwd~~~ 491 (540)
+++ +|++++.||.|++||..+++ .+ ..+.+|.. .+..+ +|+| ++++|++|+.||+|++||+++
T Consensus 260 ~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~h~~~~v~~v--~~~~~~~~~~las~s~Dg~v~~W~~~~ 328 (330)
T 2hes_X 260 FNG-LIASVGADGVLAVYEEVDGEWKVFAKRALCHGVYEINVV--KWLELNGKTILATGGDDGIVNFWSLEK 328 (330)
T ss_dssp TTS-CEEEEETTSCEEEEEEETTEEEEEEEESCTTTTSCEEEE--EEC-----CCEEEEETTSEEEEEEC--
T ss_pred CCC-EEEEEeCCCEEEEEEcCCCceEEEeccccccccceEEEE--EEecCCCceEEEEecCCCcEEEEEecc
Confidence 765 89999999999999988763 23 23456776 67777 7888 788999999999999999764
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-41 Score=326.77 Aligned_cols=283 Identities=15% Similarity=0.149 Sum_probs=227.2
Q ss_pred eeecCeEEEEeCCCCCEEEEeeCCCcEEEEcCCCC--eeEEEeecCCcceeEEEEeeCCCeEEEeeCCCeEEEEEcCCCc
Q psy18231 162 FVLSGLMHTRFPVDGSYCLTCGSDKKIKLWNPYRN--LLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQ 239 (540)
Q Consensus 162 ~h~~~v~~v~~spdg~~lat~~~dg~i~iwd~~~~--~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~ 239 (540)
.|.++|++++|+|++++||+|+.|+.|++||+.++ +.+..+.+|...|++++|+|++++|++++.|++|++||+.+++
T Consensus 9 ~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~ 88 (377)
T 3dwl_C 9 ILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDG 88 (377)
T ss_dssp ECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC------
T ss_pred cCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCC
Confidence 45689999999999999999999999999999988 7888899999999999999999999999999999999999887
Q ss_pred ---eeEeccccCCceeEEEECCCCCEEEEecCCCcEEEEEecCCCCCCcchhhhhHhhhhcCCceeEEEEeecccccccc
Q psy18231 240 ---PVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHLS 316 (540)
Q Consensus 240 ---~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (540)
....+..|...|.+++|+|++++|++++.|+.|++||+++++....
T Consensus 89 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~------------------------------- 137 (377)
T 3dwl_C 89 TWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWV------------------------------- 137 (377)
T ss_dssp CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCC-------------------------------
T ss_pred ceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCccccee-------------------------------
Confidence 6677889999999999999999999999999999999987651000
Q ss_pred cCceeeEEEeeeecccccceeeeeeccceeEEEeecccceecccccccccccchhhhhhc-ccccEEEEEecC--CeeEe
Q psy18231 317 NGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKE-ARDSITSVHVSD--HEILT 393 (540)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~l~~~~--~~l~~ 393 (540)
...+.. |...|.+++|+| +++++
T Consensus 138 ------------------------------------------------------~~~~~~~h~~~v~~~~~~~~~~~l~~ 163 (377)
T 3dwl_C 138 ------------------------------------------------------SKHLKRPLRSTILSLDWHPNNVLLAA 163 (377)
T ss_dssp ------------------------------------------------------CEEECSSCCSCEEEEEECTTSSEEEE
T ss_pred ------------------------------------------------------eeEeecccCCCeEEEEEcCCCCEEEE
Confidence 113334 889999999998 78999
Q ss_pred eeCCCeEEEEeCCC------------------CceEEee-eCCceEEEEEecCCcEEEeecCCCeEEEEeccccch----
Q psy18231 394 ASLDCRIRRYDIRT------------------GNLVTDY-VGEPIVDACFTRDCQCILTCSTDECLRLFDKATGEL---- 450 (540)
Q Consensus 394 ~~~dg~i~iwd~~~------------------~~~~~~~-~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~---- 450 (540)
++.|+.|++||++. ++++..+ +...|.+++|+|++++|++++.||.|++||+.+++.
T Consensus 164 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~ 243 (377)
T 3dwl_C 164 GCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEYPSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPPRA 243 (377)
T ss_dssp EESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECCCCSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTTSCEEE
T ss_pred EeCCCEEEEEEEEecccCCCccccccccccchhhhhhcccCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCCccee
Confidence 99999999999852 4444444 225799999999999999999999999999999988
Q ss_pred hhhhccCcCCcceEEEEecCCCCeEEEeeCCCcEEEEEecCCc--c-------------------------e--------
Q psy18231 451 LEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSS--Q-------------------------I-------- 495 (540)
Q Consensus 451 ~~~~~~~~~~v~~~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~--~-------------------------~-------- 495 (540)
+..+.+|...+..+ +|+|++++|++|+.|+.+ +|+..... . .
T Consensus 244 ~~~~~~~~~~v~~~--~~s~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (377)
T 3dwl_C 244 LITVKLSQLPLRSL--LWANESAIVAAGYNYSPI-LLQGNESGWAHTRDLDAGTSKTSFTHTGNTGEGREEEGPVSFTAL 320 (377)
T ss_dssp CCCEECSSSCEEEE--EEEETTEEEEEESSSSEE-EECCCC---CCSBCCCSCCCCCCBSSSSSBCCCCCC---------
T ss_pred eEeecCCCCceEEE--EEcCCCCEEEEEcCCcEE-EEEeCCCceEEEeeecccccccccccccccccccccccccccccc
Confidence 88999999998887 899999999999877766 66654211 0 0
Q ss_pred -eEEE--------------ecccceeeeEEEEcCCC-c---EEEeec-CCeeEEEEc
Q psy18231 496 -STLI--------------HSVGKAVVNSLCSHPTR-K---HIMSAC-GNNVKLWTA 532 (540)
Q Consensus 496 -~~~~--------------~~~~~~~v~~l~~s~d~-~---~l~s~~-d~~i~iw~~ 532 (540)
..+. ...|...|+++++.++. . .|+|++ ||.|++||+
T Consensus 321 ~~~~~~~~~~g~~~~~~~~~~~H~~~i~~~~~~~~~~~~~~~~~s~g~Dg~i~iWdl 377 (377)
T 3dwl_C 321 RSTFRNMDLKGSSQSISSLPTVHQNMIATLRPYAGTPGNITAFTSSGTDGRVVLWTL 377 (377)
T ss_dssp ----------------CCCSSSCSSCEEEEEEEEEETTEEEEEEEEETTSEEEEECC
T ss_pred cccccchhhccccccccccCccccceeEEEeccCCCCCceEEEEeecCCCcEEEecC
Confidence 0010 01289999999976544 2 699999 999999985
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.8e-41 Score=328.16 Aligned_cols=278 Identities=18% Similarity=0.228 Sum_probs=239.3
Q ss_pred cCeEEEEeCCCCCEEEEeeCCCcEEEEcCCCCeeEEEeecCCcceeEEEEeeCCCeEEEeeCCCeEEEEEcCCCceeEec
Q psy18231 165 SGLMHTRFPVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPVRRW 244 (540)
Q Consensus 165 ~~v~~v~~spdg~~lat~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~ 244 (540)
..+++++|+|++++|++++.||.|++||+.+++....+..| ..+....|+|++++|++++.||.|++||+.+++....+
T Consensus 57 ~~~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 135 (420)
T 3vl1_A 57 DAGKGNTFEKVGSHLYKARLDGHDFLFNTIIRDGSKMLKRA-DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQREID 135 (420)
T ss_dssp BCCTTCEEEEEETTEEEEEETTEEEEEECCSEETTTTSCSC-CEEEEEEECSSSCEEEEEETTSCEEEECTTSCEEEEET
T ss_pred ccccceeeeecCCeEEEEEcCCcEEEEEecccceeeEEecC-CceEEEEEecCCCEEEEEECCCCEEEEeCCCcceeeec
Confidence 44668899999999999999999999999988777666665 45556678999999999999999999999999999888
Q ss_pred cccCCceeEEEECCCCCEEEEecCCCcEEEEEecCCCCCCcchhhhhHhhhhcCCceeEEEEeecccccccccCceeeEE
Q psy18231 245 REHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHLSNGLLTKLV 324 (540)
Q Consensus 245 ~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (540)
.+|.+.|.+++|+|++++|++++.||+|++||+++++.
T Consensus 136 ~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~------------------------------------------ 173 (420)
T 3vl1_A 136 QAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSN------------------------------------------ 173 (420)
T ss_dssp TSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCC------------------------------------------
T ss_pred ccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcC------------------------------------------
Confidence 99999999999999999999999999999999987652
Q ss_pred EeeeecccccceeeeeeccceeEEEeecccceecccccccccccchhhhhhcccccEEEEEecC--CeeEeeeCCCeEEE
Q psy18231 325 FAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEARDSITSVHVSD--HEILTASLDCRIRR 402 (540)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~--~~l~~~~~dg~i~i 402 (540)
...+.+|...|.+++|+| ..+++++.||.|++
T Consensus 174 ----------------------------------------------~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~i 207 (420)
T 3vl1_A 174 ----------------------------------------------PRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRL 207 (420)
T ss_dssp ----------------------------------------------CEEEECCSSCEEEEEEETTTTEEEEEETTSCEEE
T ss_pred ----------------------------------------------ceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEE
Confidence 114567899999999998 78999999999999
Q ss_pred EeCCCCceEEeeeC-----CceEE---------------------EEEecCCcEEEeecCCCeEEEEeccccchhhhhc-
Q psy18231 403 YDIRTGNLVTDYVG-----EPIVD---------------------ACFTRDCQCILTCSTDECLRLFDKATGELLEEYK- 455 (540)
Q Consensus 403 wd~~~~~~~~~~~~-----~~i~~---------------------~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~- 455 (540)
||+++++.+..+.. ..+.+ ++|+|++++|++++.||.|++||+++++.+..+.
T Consensus 208 wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~ 287 (420)
T 3vl1_A 208 WECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPS 287 (420)
T ss_dssp EETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEECC
T ss_pred eECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEccc
Confidence 99999998888753 23444 4557899999999999999999999988766654
Q ss_pred cCcCCcceEEEEecCCCC-eEEEeeCCCcEEEEEecCCcc-eeEEEecccceeeeEEEEcCCCcEEEeec-CCeeEEEEc
Q psy18231 456 GHKSGDFRIECCLDSKDS-QIFCGSSDGKIYKWQLVDSSQ-ISTLIHSVGKAVVNSLCSHPTRKHIMSAC-GNNVKLWTA 532 (540)
Q Consensus 456 ~~~~~v~~~~~~~s~~~~-~l~s~s~dg~i~iwd~~~~~~-~~~~~~~~~~~~v~~l~~s~d~~~l~s~~-d~~i~iw~~ 532 (540)
.|...+..+ +|+|+++ +|++|+.||.|++||+.+++. +..+.. .|...|.++.| +++++|++++ |+.|++|++
T Consensus 288 ~~~~~v~~~--~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~-~~~~~v~~~~~-~~~~~l~s~~~d~~v~iw~~ 363 (420)
T 3vl1_A 288 KFTCSCNSL--TVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLI-NEGTPINNVYF-AAGALFVSSGFDTSIKLDII 363 (420)
T ss_dssp TTSSCEEEE--EECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEE-STTSCEEEEEE-ETTEEEEEETTTEEEEEEEE
T ss_pred ccCCCceeE--EEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhc-cCCCCceEEEe-CCCCEEEEecCCccEEEEec
Confidence 477778777 8999999 999999999999999998755 666662 47788888865 5788999999 999999999
Q ss_pred ccc
Q psy18231 533 EED 535 (540)
Q Consensus 533 ~~~ 535 (540)
...
T Consensus 364 ~~~ 366 (420)
T 3vl1_A 364 SDP 366 (420)
T ss_dssp CCT
T ss_pred cCC
Confidence 874
|
| >2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.1e-41 Score=331.27 Aligned_cols=300 Identities=12% Similarity=0.068 Sum_probs=223.4
Q ss_pred hhhcccccceeeeecccccce-------eeeeecCeEEEEeCCC------CCEEEEeeCCCcEEEEcCCCCee-------
Q psy18231 139 ILYELPKEWSIRVYRPLTVNR-------ELFVLSGLMHTRFPVD------GSYCLTCGSDKKIKLWNPYRNLL------- 198 (540)
Q Consensus 139 ~~~~~~~~~~i~~~~~~~~~~-------~~~h~~~v~~v~~spd------g~~lat~~~dg~i~iwd~~~~~~------- 198 (540)
++++.+.+++|++|+..+... ...|.+.|.+++|+|+ +.+||+++.||+|+|||+.++..
T Consensus 175 ~laS~s~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~ 254 (524)
T 2j04_B 175 MFDKEKHSSCIQIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKM 254 (524)
T ss_dssp -------CEEEEEEEEETTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEEC
T ss_pred hhccCCCCceEEEEEccCCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCcccccccee
Confidence 456778999999999765432 2346789999999997 57999999999999999976632
Q ss_pred ----EEEeecCCcceeEEEEeeCCCeEEEeeCCCeEEEEEcCCCc-eeEeccccCCceeEE--EECCCC-CEEEEecCCC
Q psy18231 199 ----LKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQ-PVRRWREHASKVTCV--KFNEDS-SVVISGSQDN 270 (540)
Q Consensus 199 ----~~~~~~h~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~-~~~~~~~h~~~v~~~--~~~~~~-~~l~s~~~dg 270 (540)
...+.+|...|++++|+|+ ..|++|+.||+|++||+++++ +...+.+|...|.++ .|+|++ .+|+|++.||
T Consensus 255 ~~~p~~~l~~h~~~v~sv~~s~~-~~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~ 333 (524)
T 2j04_B 255 CEKPSLTLSLADSLITTFDFLSP-TTVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDG 333 (524)
T ss_dssp CCSCSEEECCTTTCEEEEEESSS-SEEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTS
T ss_pred ecCceEEEEcCCCCEEEEEecCC-CeEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCC
Confidence 3467889999999999986 489999999999999999774 455688999999999 578887 8999999999
Q ss_pred cEEEEEecCCCCCCcchhhhhHhhhhcCCceeEEEEeecccccccccCceeeEEEeeeecccccceeeeeeccceeEEEe
Q psy18231 271 TVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLL 350 (540)
Q Consensus 271 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (540)
+|++||+++++.
T Consensus 334 tvklWD~~~~~~-------------------------------------------------------------------- 345 (524)
T 2j04_B 334 YFYIFNPKDIAT-------------------------------------------------------------------- 345 (524)
T ss_dssp EEEEECGGGHHH--------------------------------------------------------------------
T ss_pred eEEEEECCCCCc--------------------------------------------------------------------
Confidence 999999986541
Q ss_pred ecccceecccccccccccchhhhhhccc--ccEEEEEecC--CeeEeeeCCCeEEEEeCCCCceEEeeeC--CceEEEEE
Q psy18231 351 DFLGSTQIGDVTPISIHNSCFQALKEAR--DSITSVHVSD--HEILTASLDCRIRRYDIRTGNLVTDYVG--EPIVDACF 424 (540)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~v~~l~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~--~~i~~~~~ 424 (540)
...+.+|. ..|.+++|+| ..+++++.|++|++||++++.++..+.+ ..|++++|
T Consensus 346 --------------------~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~ 405 (524)
T 2j04_B 346 --------------------TKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVSRETTITAIGV 405 (524)
T ss_dssp --------------------HCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEEECSSCEEEEEC
T ss_pred --------------------ccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECcccccceeeecCCCceEEEEe
Confidence 11222333 2477899999 6789999999999999999987766654 58999999
Q ss_pred ecCCcEEEeecCCCeEEEEeccccchhhhhccCc---C--CcceEEEEecCCCCeEEEeeCCCcEEEEEec-CCcceeEE
Q psy18231 425 TRDCQCILTCSTDECLRLFDKATGELLEEYKGHK---S--GDFRIECCLDSKDSQIFCGSSDGKIYKWQLV-DSSQISTL 498 (540)
Q Consensus 425 sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~---~--~v~~~~~~~s~~~~~l~s~s~dg~i~iwd~~-~~~~~~~~ 498 (540)
+|+|++|++|+.||+|++||+..+ .+..++.+. . .++ .++|+|+++.+. ... .+++|+.. ++..+..+
T Consensus 406 Sp~g~~l~Sgs~Dgtv~lwd~~~~-~~~~~~~~~~~~~~~~v~--~v~~sp~g~~~~-~~~--~~~~~~~~~~g~~~~~l 479 (524)
T 2j04_B 406 SRLHPMVLAGSADGSLIITNAARR-LLHGIKNSSATQKSLRLW--KWDYSIKDDKYR-IDS--SYEVYPLTVNDVSKAKI 479 (524)
T ss_dssp CSSCCBCEEEETTTEEECCBSCSS-TTTCC------CCCCEEE--ECBCCSSSCEEE-ECC--CCCCCC-----------
T ss_pred CCCCCeEEEEECCCEEEEEechHh-hccccccCccceeeeEEE--EeccCCCCCeEE-ccC--CceecccccCCcceeee
Confidence 999999999999999999998654 333322111 1 233 448999998552 222 23344432 56677777
Q ss_pred EecccceeeeEEEEcCCCc---EEEeec-CCeeEEEEcccc
Q psy18231 499 IHSVGKAVVNSLCSHPTRK---HIMSAC-GNNVKLWTAEED 535 (540)
Q Consensus 499 ~~~~~~~~v~~l~~s~d~~---~l~s~~-d~~i~iw~~~~~ 535 (540)
. +|...|.+|+|+|+++ +|++|+ ||.|+||++..+
T Consensus 480 ~--gh~~~V~~Vafsp~~~~~~~lAsg~~~g~vrlw~l~~~ 518 (524)
T 2j04_B 480 D--AHGINITCTKWNETSAGGKCYAFSNSAGLLTLEYLSLE 518 (524)
T ss_dssp ----CCCSCCCEEECCSTTTTTEEEEECTTSEEEEEECSCC
T ss_pred c--CCCceEEEEECCCCCCccHHHHhhccCceEEEEEcccc
Confidence 7 8999999999999964 999999 999999999765
|
| >3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-40 Score=316.78 Aligned_cols=267 Identities=17% Similarity=0.264 Sum_probs=231.0
Q ss_pred CcEEEEcCCCCeeEEEeecCCcceeEEEEeeCCCeEEEeeCCCeEEEEEcCCCceeEeccccCCceeEEEECCCCCEEEE
Q psy18231 186 KKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVIS 265 (540)
Q Consensus 186 g~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s 265 (540)
..+..|+..+..+..++.+|.+.|++++|+|++++|++|+.|++|+|||+.+++....+..|...|.+++|+|++++|++
T Consensus 46 ~~~~~~~~~~~~~~~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~las 125 (380)
T 3iz6_a 46 RTAVSFNPTDLVCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVAC 125 (380)
T ss_dssp GGCCCCCCCCCEEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTSSEEEE
T ss_pred ccccccccceeEEeecccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECCCCCEEEE
Confidence 34456787788888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCcEEEEEecCCCCCCcchhhhhHhhhhcCCceeEEEEeecccccccccCceeeEEEeeeecccccceeeeeeccce
Q psy18231 266 GSQDNTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQH 345 (540)
Q Consensus 266 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (540)
|+.|+.+++||+.+.......
T Consensus 126 ~~~d~~v~iw~~~~~~~~~~~----------------------------------------------------------- 146 (380)
T 3iz6_a 126 GGLDSACSIFNLSSQADRDGN----------------------------------------------------------- 146 (380)
T ss_dssp CCSSSCCEEEECCCCSSCCCS-----------------------------------------------------------
T ss_pred eeCCCcEEEEECCCCccccCC-----------------------------------------------------------
Confidence 999999999999764310000
Q ss_pred eEEEeecccceecccccccccccchhhhhhcccccEEEEEecC---CeeEeeeCCCeEEEEeCCCCceEEeee-------
Q psy18231 346 LMVLLDFLGSTQIGDVTPISIHNSCFQALKEARDSITSVHVSD---HEILTASLDCRIRRYDIRTGNLVTDYV------- 415 (540)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~------- 415 (540)
......+.+|.+.|.++.|.| ..+++++.|++|++||+++++.+..+.
T Consensus 147 ----------------------~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h 204 (380)
T 3iz6_a 147 ----------------------MPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGH 204 (380)
T ss_dssp ----------------------STTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSC
T ss_pred ----------------------ccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCC
Confidence 001225678899999999987 579999999999999999999887662
Q ss_pred CCceEEEEEec-CCcEEEeecCCCeEEEEecc-ccchhhhhccCcCCcceEEEEecCCCCeEEEeeCCCcEEEEEecCCc
Q psy18231 416 GEPIVDACFTR-DCQCILTCSTDECLRLFDKA-TGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSS 493 (540)
Q Consensus 416 ~~~i~~~~~sp-~~~~l~~~~~dg~i~i~d~~-~~~~~~~~~~~~~~v~~~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~ 493 (540)
...|.+++|+| ++++|++|+.|+.|++||++ .++.+..+.+|...|.++ +|+|++++|++|+.||+|++||+.+++
T Consensus 205 ~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v--~~~p~~~~l~s~s~D~~i~lwd~~~~~ 282 (380)
T 3iz6_a 205 TADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSV--KFFPDGQRFGTGSDDGTCRLFDMRTGH 282 (380)
T ss_dssp CSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEE--EECTTSSEEEEECSSSCEEEEETTTTE
T ss_pred ccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEE--EEecCCCeEEEEcCCCeEEEEECCCCc
Confidence 25799999987 88999999999999999998 457788899999999988 899999999999999999999999999
Q ss_pred ceeEEEec-----ccceeeeEEEEcCCCcEEEeec-CCeeEEEEcccc
Q psy18231 494 QISTLIHS-----VGKAVVNSLCSHPTRKHIMSAC-GNNVKLWTAEED 535 (540)
Q Consensus 494 ~~~~~~~~-----~~~~~v~~l~~s~d~~~l~s~~-d~~i~iw~~~~~ 535 (540)
.+..+... .+...|++++|+|+|++|++|+ ||.|++||+..+
T Consensus 283 ~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~ 330 (380)
T 3iz6_a 283 QLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLA 330 (380)
T ss_dssp EEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTC
T ss_pred EEEEecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCC
Confidence 88887621 1223489999999999999999 999999998643
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-39 Score=319.79 Aligned_cols=291 Identities=17% Similarity=0.276 Sum_probs=236.5
Q ss_pred eeeecCeEEEEeCCCCCEEEEeeCCCcEEEEcCCCCe-----------eEEEeecCC------------cceeEEEEeeC
Q psy18231 161 LFVLSGLMHTRFPVDGSYCLTCGSDKKIKLWNPYRNL-----------LLKTYGGHA------------HEVNDATAACD 217 (540)
Q Consensus 161 ~~h~~~v~~v~~spdg~~lat~~~dg~i~iwd~~~~~-----------~~~~~~~h~------------~~v~~l~~sp~ 217 (540)
..|.+.|++++|+|+|++||+|+.||.|+|||+.+++ ....+.+|. ..|++++|+|+
T Consensus 25 ~~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~ 104 (447)
T 3dw8_B 25 VAEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQ 104 (447)
T ss_dssp CCGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCC
T ss_pred ccccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCC
Confidence 4578999999999999999999999999999998876 578889998 88999999999
Q ss_pred C--CeEEEeeCCCeEEEEEcCCCcee----------------------------------------EeccccCCceeEEE
Q psy18231 218 S--SQIASGASDKSVILWEVTTGQPV----------------------------------------RRWREHASKVTCVK 255 (540)
Q Consensus 218 ~--~~l~s~s~dg~i~iwd~~~~~~~----------------------------------------~~~~~h~~~v~~~~ 255 (540)
+ .+|++++.|++|++||+.+++.. ....+|...|.+++
T Consensus 105 ~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~ 184 (447)
T 3dw8_B 105 KNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSIS 184 (447)
T ss_dssp CSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEE
T ss_pred CCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEE
Confidence 8 79999999999999999775432 11367999999999
Q ss_pred ECCCCCEEEEecCCCcEEEEEecCCCCCCcchhhhhHhhhhcCCceeEEEEeecccccccccCceeeEEEeeeecccccc
Q psy18231 256 FNEDSSVVISGSQDNTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGL 335 (540)
Q Consensus 256 ~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (540)
|+|++++|+++ .||.|++||++.... ...
T Consensus 185 ~~~~~~~l~s~-~d~~i~iwd~~~~~~-~~~------------------------------------------------- 213 (447)
T 3dw8_B 185 INSDYETYLSA-DDLRINLWHLEITDR-SFN------------------------------------------------- 213 (447)
T ss_dssp ECTTSSEEEEE-CSSEEEEEETTEEEE-EEE-------------------------------------------------
T ss_pred EcCCCCEEEEe-CCCeEEEEECCCCCc-eee-------------------------------------------------
Confidence 99999999998 799999999974321 000
Q ss_pred eeeeeeccceeEEEeecccceecccccccccccchhhhhhcccccEEEEEecC---CeeEeeeCCCeEEEEeCCCCce--
Q psy18231 336 LSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEARDSITSVHVSD---HEILTASLDCRIRRYDIRTGNL-- 410 (540)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~---~~l~~~~~dg~i~iwd~~~~~~-- 410 (540)
... . ....+..|...|.+++|+| .++++++.||.|++||+++++.
T Consensus 214 -------------~~~---------~--------~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~ 263 (447)
T 3dw8_B 214 -------------IVD---------I--------KPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCD 263 (447)
T ss_dssp -------------EEE---------C--------CCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSC
T ss_pred -------------eee---------c--------ccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCcccc
Confidence 000 0 0014567899999999998 5799999999999999999886
Q ss_pred --EEeeeCC--------------ceEEEEEecCCcEEEeecCCCeEEEEeccc-cchhhhhccCcCCcc-----------
Q psy18231 411 --VTDYVGE--------------PIVDACFTRDCQCILTCSTDECLRLFDKAT-GELLEEYKGHKSGDF----------- 462 (540)
Q Consensus 411 --~~~~~~~--------------~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~v~----------- 462 (540)
+..+..+ .|.+++|+|++++|++++. +.|++||+++ ++++..+.+|...+.
T Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i 342 (447)
T 3dw8_B 264 RHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKLCSLYENDCI 342 (447)
T ss_dssp TTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGTTTHHHHHHTSGG
T ss_pred ceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeecccccccccccccccccc
Confidence 5666543 8999999999999999999 9999999997 888889988864332
Q ss_pred --eEEEEecCCCCeEEEeeCCCcEEEEEecCCcceeEEEe------------------------------cccceeeeEE
Q psy18231 463 --RIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIH------------------------------SVGKAVVNSL 510 (540)
Q Consensus 463 --~~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~------------------------------~~~~~~v~~l 510 (540)
...++|+|++++|++|+.||.|++||+.+++.+..... ..+...|..+
T Consensus 343 ~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 422 (447)
T 3dw8_B 343 FDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDITLEASRENNKPRTVLKPRKVCASGKRKKDEISVDSLDFNKKILHT 422 (447)
T ss_dssp GCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEEEECCSTTCCTTCBCCCCCEECSSCCCTTCEEGGGCCTTSCCCEE
T ss_pred ccceEEEECCCCCEEEEeccCCEEEEEEcCCCcceeeeecccccccccccCCccccccCCcccccccccccccCCceeEE
Confidence 11238999999999999999999999998876532110 0234568999
Q ss_pred EEcCCCcEEEeecCCeeEEEEcc
Q psy18231 511 CSHPTRKHIMSACGNNVKLWTAE 533 (540)
Q Consensus 511 ~~s~d~~~l~s~~d~~i~iw~~~ 533 (540)
+|+|++.+|++++.+.+.+|...
T Consensus 423 ~~~p~~~~la~~~~~~~~~~~~~ 445 (447)
T 3dw8_B 423 AWHPKENIIAVATTNNLYIFQDK 445 (447)
T ss_dssp EECSSSSEEEEECSSCEEEEECC
T ss_pred EECCCCCEEEEEecceeeeeccc
Confidence 99999999999995568888753
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-39 Score=305.96 Aligned_cols=264 Identities=17% Similarity=0.290 Sum_probs=220.5
Q ss_pred hhhhhcccccceeeeeccccc----------ceeeeeecCeEEEEeCCCCCEEEEeeCCCcEEEEcCCCCeeEEEeecCC
Q psy18231 137 TRILYELPKEWSIRVYRPLTV----------NRELFVLSGLMHTRFPVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHA 206 (540)
Q Consensus 137 ~~~~~~~~~~~~i~~~~~~~~----------~~~~~h~~~v~~v~~spdg~~lat~~~dg~i~iwd~~~~~~~~~~~~h~ 206 (540)
..++++++.|++|++|+.... ....+|...|.+++|+|++.+|++|+.|++|++||+.+++.+..+.+|.
T Consensus 39 ~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~h~ 118 (343)
T 2xzm_R 39 SPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQ 118 (343)
T ss_dssp CCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEEEEEETTSEEEEEETTSSCEEEEEECCC
T ss_pred CCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEEEcCCC
Confidence 456788899999999997642 1235699999999999999999999999999999999999999999999
Q ss_pred cceeEEEEeeCCCeEEEeeCCCeEEEEEcCCCceeEec---cccCCceeEEEECCCC----------CEEEEecCCCcEE
Q psy18231 207 HEVNDATAACDSSQIASGASDKSVILWEVTTGQPVRRW---REHASKVTCVKFNEDS----------SVVISGSQDNTVM 273 (540)
Q Consensus 207 ~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~---~~h~~~v~~~~~~~~~----------~~l~s~~~dg~i~ 273 (540)
..|.+++|+|++++|++++.|++|++||+... ..... ..|...|.+++|+|++ .+|++++.||.|+
T Consensus 119 ~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~ 197 (343)
T 2xzm_R 119 SEVYSVAFSPDNRQILSAGAEREIKLWNILGE-CKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLK 197 (343)
T ss_dssp SCEEEEEECSSTTEEEEEETTSCEEEEESSSC-EEEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEE
T ss_pred CcEEEEEECCCCCEEEEEcCCCEEEEEeccCC-ceeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEE
Confidence 99999999999999999999999999999743 33333 3789999999999986 7899999999999
Q ss_pred EEEecCCCCCCcchhhhhHhhhhcCCceeEEEEeecccccccccCceeeEEEeeeecccccceeeeeeccceeEEEeecc
Q psy18231 274 MWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFL 353 (540)
Q Consensus 274 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (540)
+||... +
T Consensus 198 iwd~~~-~------------------------------------------------------------------------ 204 (343)
T 2xzm_R 198 VWNTNF-Q------------------------------------------------------------------------ 204 (343)
T ss_dssp EEETTT-E------------------------------------------------------------------------
T ss_pred EEcCCC-c------------------------------------------------------------------------
Confidence 999321 1
Q ss_pred cceecccccccccccchhhhhhcccccEEEEEecC--CeeEeeeCCCeEEEEeCC-CCceEEee-eCCceEEEEEecCCc
Q psy18231 354 GSTQIGDVTPISIHNSCFQALKEARDSITSVHVSD--HEILTASLDCRIRRYDIR-TGNLVTDY-VGEPIVDACFTRDCQ 429 (540)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~--~~l~~~~~dg~i~iwd~~-~~~~~~~~-~~~~i~~~~~sp~~~ 429 (540)
....+.+|...|.+++|+| ++|++++.||.|++||+. .......+ .++.|.+++|+|++.
T Consensus 205 ----------------~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~~ 268 (343)
T 2xzm_R 205 ----------------IRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQREFDAGSTINQIAFNPKLQ 268 (343)
T ss_dssp ----------------EEEEEECCSSCEEEEEECTTSSEEEEEETTCEEEEEESSCCSSCSEEEECSSCEEEEEECSSSC
T ss_pred ----------------eeEEEcCccccceEEEECCCCCEEEEEcCCCeEEEEECCCCcccceeecCCCcEEEEEECCCCC
Confidence 0114557889999999998 789999999999999994 44444444 357899999999998
Q ss_pred EEEeecCCCeEEEEeccccchhh--hhc-----------cCcCCcceEEEEecCCCCeEEEeeCCCcEEEEEecCCc
Q psy18231 430 CILTCSTDECLRLFDKATGELLE--EYK-----------GHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSS 493 (540)
Q Consensus 430 ~l~~~~~dg~i~i~d~~~~~~~~--~~~-----------~~~~~v~~~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~ 493 (540)
+++++ .|+.|++||+.+++... .+. +|...+.++ +|+|+|++|++|+.||.|++|++.++.
T Consensus 269 ~la~~-~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~sp~g~~l~sg~~Dg~v~~w~~~~g~ 342 (343)
T 2xzm_R 269 WVAVG-TDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSL--AWNALGKKLFAGFTDGVIRTFSFETSA 342 (343)
T ss_dssp EEEEE-ESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEE--EECSSSCCEEEEETTSEEEEEEEEEEE
T ss_pred EEEEE-CCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCceEEE--EECCCCCeEEEecCCceEEEEEEEccC
Confidence 88755 57889999998776543 332 566777666 899999999999999999999987653
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7.3e-39 Score=340.71 Aligned_cols=286 Identities=18% Similarity=0.245 Sum_probs=260.7
Q ss_pred eeeeeecCeEEEEeCCCCCEEEEeeCCCcEEEEcCCCCeeEEEeecCCcceeEEEEeeCCCeEEEeeCCCeEEEEEcCCC
Q psy18231 159 RELFVLSGLMHTRFPVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTG 238 (540)
Q Consensus 159 ~~~~h~~~v~~v~~spdg~~lat~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~ 238 (540)
...+|.+.|++++|+|++++||+++.||.|+|||+.+++.+..+.+|...|.+++|+|++++|++++.||.|++||+.++
T Consensus 8 ~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~ 87 (814)
T 3mkq_A 8 TFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTG 87 (814)
T ss_dssp EEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTC
T ss_pred eeecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCC
Confidence 45679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeEeccccCCceeEEEECCCCCEEEEecCCCcEEEEEecCCCCCCcchhhhhHhhhhcCCceeEEEEeecccccccccC
Q psy18231 239 QPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHLSNG 318 (540)
Q Consensus 239 ~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (540)
+.+..+.+|.+.|.+++|+|++++|++++.||.|++||+.++..
T Consensus 88 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~------------------------------------ 131 (814)
T 3mkq_A 88 EKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWA------------------------------------ 131 (814)
T ss_dssp CEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSE------------------------------------
T ss_pred cEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCce------------------------------------
Confidence 99999999999999999999999999999999999999976531
Q ss_pred ceeeEEEeeeecccccceeeeeeccceeEEEeecccceecccccccccccchhhhhhcccccEEEEEecC---CeeEeee
Q psy18231 319 LLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEARDSITSVHVSD---HEILTAS 395 (540)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~---~~l~~~~ 395 (540)
....+.+|...|.+++|+| ..+++++
T Consensus 132 ---------------------------------------------------~~~~~~~~~~~v~~~~~~p~~~~~l~~~~ 160 (814)
T 3mkq_A 132 ---------------------------------------------------LEQTFEGHEHFVMCVAFNPKDPSTFASGC 160 (814)
T ss_dssp ---------------------------------------------------EEEEEECCSSCEEEEEEETTEEEEEEEEE
T ss_pred ---------------------------------------------------EEEEEcCCCCcEEEEEEEcCCCCEEEEEe
Confidence 1114557888999999987 6899999
Q ss_pred CCCeEEEEeCCCCceEEeeeC---CceEEEEEec--CCcEEEeecCCCeEEEEeccccchhhhhccCcCCcceEEEEecC
Q psy18231 396 LDCRIRRYDIRTGNLVTDYVG---EPIVDACFTR--DCQCILTCSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLDS 470 (540)
Q Consensus 396 ~dg~i~iwd~~~~~~~~~~~~---~~i~~~~~sp--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~s~ 470 (540)
.||.|++||+.+++....+.. ..+.+++|+| ++++|++++.||.|++||+.+++.+..+.+|...+..+ +|+|
T Consensus 161 ~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~--~~~~ 238 (814)
T 3mkq_A 161 LDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFA--VFHP 238 (814)
T ss_dssp TTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEECCSSCEEEE--EECS
T ss_pred CCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEcCCCCCEEEE--EEcC
Confidence 999999999998877666653 6799999999 99999999999999999999999999999999988887 8999
Q ss_pred CCCeEEEeeCCCcEEEEEecCCcceeEEEecccceeeeEEEEcCCCc--EEEeecCCeeEEEEcccc
Q psy18231 471 KDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRK--HIMSACGNNVKLWTAEED 535 (540)
Q Consensus 471 ~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~--~l~s~~d~~i~iw~~~~~ 535 (540)
++++|++++.||.|++||+.+++.+..+. .|...+.+++|+|++. ++++++|+.+.+|++..+
T Consensus 239 ~~~~l~~~~~dg~v~vwd~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (814)
T 3mkq_A 239 TLPIIISGSEDGTLKIWNSSTYKVEKTLN--VGLERSWCIATHPTGRKNYIASGFDNGFTVLSLGND 303 (814)
T ss_dssp SSSEEEEEETTSCEEEEETTTCSEEEEEC--CSSSSEEEEEECTTCGGGEEEEEETTEEEEEECSCC
T ss_pred CCCEEEEEeCCCeEEEEECCCCcEEEEee--cCCCcEEEEEEccCCCceEEEEEeCCCEEEEEcCCC
Confidence 99999999999999999999999999888 7889999999999987 455555888999998654
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-38 Score=337.15 Aligned_cols=364 Identities=8% Similarity=0.094 Sum_probs=245.9
Q ss_pred eeeeecCeEEEEeCCCCCEEEEeeCCCcEEEEcCCCCeeEEEeecCCcceeEEEEeeCCCeEEEeeCCCeEEEEEcCCCc
Q psy18231 160 ELFVLSGLMHTRFPVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQ 239 (540)
Q Consensus 160 ~~~h~~~v~~v~~spdg~~lat~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~ 239 (540)
..+|.+.|++++|+|++++||+|+.||+|+||+..+.+....+. |...|.+++|+| +++|++++.|++|++||+.+++
T Consensus 13 ~~gh~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~~~~~-~~~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~~~~ 90 (902)
T 2oaj_A 13 KYGMSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVVIKLE-DRSAIKEMRFVK-GIYLVVINAKDTVYVLSLYSQK 90 (902)
T ss_dssp EEECSSCEEEEEEETTTTEEEEEETTSEEEEECSTTCEEEEECS-SCCCEEEEEEET-TTEEEEEETTCEEEEEETTTCS
T ss_pred ccCCCCCcEEEEECCCCCEEEEEeCCCEEEEEeCCCcEEEEEcC-CCCCEEEEEEcC-CCEEEEEECcCeEEEEECCCCc
Confidence 45899999999999999999999999999999998887766654 788999999999 8899999999999999999999
Q ss_pred eeEeccccCCceeEEEECCCCCEEEEecCCCcEEEEEecCCCCCCcchhhhh---HhhhhcCCceeEEEEeecccc--cc
Q psy18231 240 PVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQVRCLN---EALKEARDSITSVHSLVKSTK--NH 314 (540)
Q Consensus 240 ~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~--~~ 314 (540)
.+..+. |.+.|++++|+|++++|++|+.||+|++||+++++.......... .....+...+..+ .+.+. ..
T Consensus 91 ~~~~~~-~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl---~~sp~~~~~ 166 (902)
T 2oaj_A 91 VLTTVF-VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSI---QWNPRDIGT 166 (902)
T ss_dssp EEEEEE-CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEE---EEETTEEEE
T ss_pred EEEEEc-CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEE---EEccCCCCE
Confidence 988885 778999999999999999999999999999987653211110000 0112222233332 22221 12
Q ss_pred cccCceeeEEEeeeeccc---------------------------ccceeee----------eeccceeEEEeeccccee
Q psy18231 315 LSNGLLTKLVFAFRCKYL---------------------------NGLLSGV----------LMSTQHLMVLLDFLGSTQ 357 (540)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~---------------------------~~~~~~~----------~~~~~~~~~~~~~~~~~~ 357 (540)
+..+.....+ .|+.... ...+..+ ..+.++.+.+|+......
T Consensus 167 l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~~ 245 (902)
T 2oaj_A 167 VLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANSGHM 245 (902)
T ss_dssp EEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEETTTCCE
T ss_pred EEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcE
Confidence 2222222222 2221110 0112222 223445556665532211
Q ss_pred ccc-------------------------cccccc----cc---c--------------hhhhhh----------------
Q psy18231 358 IGD-------------------------VTPISI----HN---S--------------CFQALK---------------- 375 (540)
Q Consensus 358 ~~~-------------------------~~~~~~----~~---~--------------~~~~~~---------------- 375 (540)
+.. +..+.. .. . .+..+.
T Consensus 246 ~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~ 325 (902)
T 2oaj_A 246 IMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSITSYEGMK 325 (902)
T ss_dssp EEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCGGGCCHHHHH
T ss_pred EEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCCccccchhhhh
Confidence 100 000000 00 0 000000
Q ss_pred --------------cccccEEEEEecC------------CeeEeeeCCCeEEEEeCCCCceEEe-------e--eCCceE
Q psy18231 376 --------------EARDSITSVHVSD------------HEILTASLDCRIRRYDIRTGNLVTD-------Y--VGEPIV 420 (540)
Q Consensus 376 --------------~~~~~v~~l~~~~------------~~l~~~~~dg~i~iwd~~~~~~~~~-------~--~~~~i~ 420 (540)
.+...|.++.+.+ ..+++++.||.|++||+.++..... + +...|+
T Consensus 326 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~ 405 (902)
T 2oaj_A 326 NYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLFPQNLSWLRPLAT 405 (902)
T ss_dssp HHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGGSCGGGTTBTTBEE
T ss_pred hhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCcccccccCCCcccccCCCee
Confidence 1223344444321 2567777788888888876643322 0 012333
Q ss_pred ----------------------------------EEEEecCCcEEEeecCCCeEEEEeccccchhh--hh---------c
Q psy18231 421 ----------------------------------DACFTRDCQCILTCSTDECLRLFDKATGELLE--EY---------K 455 (540)
Q Consensus 421 ----------------------------------~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~--~~---------~ 455 (540)
+++|+|++++|++|+.|++|++||+.+++... .+ .
T Consensus 406 ~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~ 485 (902)
T 2oaj_A 406 TSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNK 485 (902)
T ss_dssp EEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTTTTBCEEEEHHHHTTC
T ss_pred EEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccCcEEEEecCCCcEEEEECCCccccCCceEEeechhhcCC
Confidence 44567899999999999999999998875321 11 1
Q ss_pred cCcCCcceEEEEecCCCCeEEEeeCCCcEEEEEecCCc------------------------------------------
Q psy18231 456 GHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSS------------------------------------------ 493 (540)
Q Consensus 456 ~~~~~v~~~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~------------------------------------------ 493 (540)
+|...|.++ +|+||+++||+|+.||+|++||+.+++
T Consensus 486 ~h~~~V~sv--afspdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 563 (902)
T 2oaj_A 486 AKELAVDKI--SFAAETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQ 563 (902)
T ss_dssp SSSCCEEEE--EEETTTTEEEEEETTSCEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSE
T ss_pred CCCCceeEE--EecCCCCeEEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCC
Confidence 788888888 899999999999999999999998763
Q ss_pred ---ceeEEEecccceeeeEEEEcCCCcEEEeec-CCeeEEEEcccc
Q psy18231 494 ---QISTLIHSVGKAVVNSLCSHPTRKHIMSAC-GNNVKLWTAEED 535 (540)
Q Consensus 494 ---~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~-d~~i~iw~~~~~ 535 (540)
++..+. +|.+.|++++||||| +||+|+ |++|+|||+++.
T Consensus 564 g~~~~~~l~--~h~~~V~svafSpdG-~lAsgs~D~tv~lwd~~~~ 606 (902)
T 2oaj_A 564 GFMPSTAVH--ANKGKTSAINNSNIG-FVGIAYAAGSLMLIDRRGP 606 (902)
T ss_dssp EEEEEEEEC--CCSCSEEEEEECBTS-EEEEEETTSEEEEEETTTT
T ss_pred ccceeEEEE--cCCCcEEEEEecCCc-EEEEEeCCCcEEEEECCCC
Confidence 244555 799999999999999 999999 999999998763
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.3e-40 Score=322.48 Aligned_cols=279 Identities=15% Similarity=0.257 Sum_probs=231.0
Q ss_pred eeeecCeEEEEeCC-CCCEEEEeeCCCcEEEEcCCC---Ce---eEEEeecCCcceeEEEEeeCCCeEEEeeCCCeEEEE
Q psy18231 161 LFVLSGLMHTRFPV-DGSYCLTCGSDKKIKLWNPYR---NL---LLKTYGGHAHEVNDATAACDSSQIASGASDKSVILW 233 (540)
Q Consensus 161 ~~h~~~v~~v~~sp-dg~~lat~~~dg~i~iwd~~~---~~---~~~~~~~h~~~v~~l~~sp~~~~l~s~s~dg~i~iw 233 (540)
.+|.+.|++++|+| ++++|++|+.||+|+|||+.+ +. ....+ +|...|++++|+|++++|++++.||+|++|
T Consensus 60 ~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~s~s~dg~i~vw 138 (437)
T 3gre_A 60 ENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTY-DCSSTVTQITMIPNFDAFAVSSKDGQIIVL 138 (437)
T ss_dssp TTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEE-ECSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred cCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeec-cCCCCEEEEEEeCCCCEEEEEeCCCEEEEE
Confidence 45889999999999 999999999999999999876 33 23333 499999999999999999999999999999
Q ss_pred EcC---CCceeEeccc------------cCCceeEEE--ECCCCCEEEEecCCCcEEEEEecCCCCCCcchhhhhHhhhh
Q psy18231 234 EVT---TGQPVRRWRE------------HASKVTCVK--FNEDSSVVISGSQDNTVMMWDVKSRSHHPIQVRCLNEALKE 296 (540)
Q Consensus 234 d~~---~~~~~~~~~~------------h~~~v~~~~--~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 296 (540)
|++ +++.+..+.. +...+.++. +++++.+|++++.||.|++||+++++.
T Consensus 139 d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~-------------- 204 (437)
T 3gre_A 139 KVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLER-------------- 204 (437)
T ss_dssp EEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCE--------------
T ss_pred EeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCee--------------
Confidence 995 5655443332 455667776 567899999999999999999988652
Q ss_pred cCCceeEEEEeecccccccccCceeeEEEeeeecccccceeeeeeccceeEEEeecccceecccccccccccchhhhhhc
Q psy18231 297 ARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKE 376 (540)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (540)
+..+..
T Consensus 205 --------------------------------------------------------------------------~~~~~~ 210 (437)
T 3gre_A 205 --------------------------------------------------------------------------LQIIEN 210 (437)
T ss_dssp --------------------------------------------------------------------------EEEEEC
T ss_pred --------------------------------------------------------------------------eEEEcc
Confidence 112333
Q ss_pred --ccccEEEEEecC--CeeEeeeCCCeEEEEeCCCCceEEeee-C--CceEEEEEe----cCCcEEEeecCCCeEEEEec
Q psy18231 377 --ARDSITSVHVSD--HEILTASLDCRIRRYDIRTGNLVTDYV-G--EPIVDACFT----RDCQCILTCSTDECLRLFDK 445 (540)
Q Consensus 377 --~~~~v~~l~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~-~--~~i~~~~~s----p~~~~l~~~~~dg~i~i~d~ 445 (540)
|...|.+++|+| .++++++.||.|++||+++++++..+. . .+|.+++|+ |++++|++++.||.|++||+
T Consensus 211 ~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~ 290 (437)
T 3gre_A 211 SPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNF 290 (437)
T ss_dssp CGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEET
T ss_pred CCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEc
Confidence 788999999998 889999999999999999999988775 3 479999665 56889999999999999999
Q ss_pred cccchhhhhcc--------------------------CcCCcceEEEEecCCCCeEEEeeCCCcEEEEEecCCcceeEEE
Q psy18231 446 ATGELLEEYKG--------------------------HKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLI 499 (540)
Q Consensus 446 ~~~~~~~~~~~--------------------------~~~~v~~~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~ 499 (540)
++++.+..+.+ |...|.++ +|+ ++++|++|+.||.|++||+.+++....+.
T Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l--~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~~~~ 367 (437)
T 3gre_A 291 VKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTI--SVS-NDKILLTDEATSSIVMFSLNELSSSKAVI 367 (437)
T ss_dssp TTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCE--EEE-TTEEEEEEGGGTEEEEEETTCGGGCEEEE
T ss_pred CCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEE--EEC-CceEEEecCCCCeEEEEECCCcccceEEe
Confidence 98887665554 44456666 677 77899999999999999999998887776
Q ss_pred ec-----------------------------------ccceeeeEEEEcCC--CcEEEeec-CCeeEEEE
Q psy18231 500 HS-----------------------------------VGKAVVNSLCSHPT--RKHIMSAC-GNNVKLWT 531 (540)
Q Consensus 500 ~~-----------------------------------~~~~~v~~l~~s~d--~~~l~s~~-d~~i~iw~ 531 (540)
.. .|...|++++|+++ +.+|++++ ||.|+||+
T Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~~~l~s~~~dG~I~iw~ 437 (437)
T 3gre_A 368 SPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSISTCEVDETPLLVACDNSGLIGIFQ 437 (437)
T ss_dssp CC--CCCEEEEEEEETTEEEEEEECC-------------CCCEEEEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred cccccCceEEEEEeecceEEEEEecccccccccCcccccccceeeEeeeccCCceEEEEEcCCceEEEeC
Confidence 21 18899999999998 88999999 99999995
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-39 Score=313.78 Aligned_cols=276 Identities=15% Similarity=0.233 Sum_probs=237.6
Q ss_pred eEEEEeCCCCCEEEEeeCCCcEEEEcCCCCeeEEEeec-CCcceeEEEEeeCCCeEEEeeCCCeEEEEEcCCCceeEecc
Q psy18231 167 LMHTRFPVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGG-HAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPVRRWR 245 (540)
Q Consensus 167 v~~v~~spdg~~lat~~~dg~i~iwd~~~~~~~~~~~~-h~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~ 245 (540)
+.++.|++ ..+++++.|+.|++||+.+++....+.. |...|++++|+|++++|++++.||.|++||+.+++.+..+.
T Consensus 96 ~~~~~~s~--~~l~~~~~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 173 (401)
T 4aez_A 96 LNLLDWSN--LNVVAVALERNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMA 173 (401)
T ss_dssp CBCEEECT--TSEEEEEETTEEEEEETTTCCEEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEEC
T ss_pred EEEEeecC--CCEEEEECCCeEEEeeCCCCcEeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCeEEEEec
Confidence 45566665 4577888999999999999998887765 88999999999999999999999999999999999999999
Q ss_pred ccCCceeEEEECCCCCEEEEecCCCcEEEEEecCCCCCCcchhhhhHhhhhcCCceeEEEEeecccccccccCceeeEEE
Q psy18231 246 EHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHLSNGLLTKLVF 325 (540)
Q Consensus 246 ~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (540)
+|...|.+++| ++++|++++.||.|++||++....
T Consensus 174 ~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~------------------------------------------- 208 (401)
T 4aez_A 174 GHQARVGCLSW--NRHVLSSGSRSGAIHHHDVRIANH------------------------------------------- 208 (401)
T ss_dssp CCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSC-------------------------------------------
T ss_pred CCCCceEEEEE--CCCEEEEEcCCCCEEEEecccCcc-------------------------------------------
Confidence 99999999999 467999999999999999985431
Q ss_pred eeeecccccceeeeeeccceeEEEeecccceecccccccccccchhhhhhcccccEEEEEecC--CeeEeeeCCCeEEEE
Q psy18231 326 AFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEARDSITSVHVSD--HEILTASLDCRIRRY 403 (540)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~--~~l~~~~~dg~i~iw 403 (540)
....+.+|...|.+++|+| ..+++++.||.|++|
T Consensus 209 --------------------------------------------~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iw 244 (401)
T 4aez_A 209 --------------------------------------------QIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIW 244 (401)
T ss_dssp --------------------------------------------EEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred --------------------------------------------eeeEEcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEc
Confidence 0114557889999999998 789999999999999
Q ss_pred eCCCCceEEeeeC--CceEEEEEecCCc-EEEeec--CCCeEEEEeccccchhhhhccCcCCcceEEEEecCCCCeEEE-
Q psy18231 404 DIRTGNLVTDYVG--EPIVDACFTRDCQ-CILTCS--TDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFC- 477 (540)
Q Consensus 404 d~~~~~~~~~~~~--~~i~~~~~sp~~~-~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~s~~~~~l~s- 477 (540)
|+++++.+..+.. ..|.+++|+|++. ++++++ .|+.|++||+.+++.+..+. +...+..+ +|+|++++|++
T Consensus 245 d~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~-~~~~v~~~--~~s~~~~~l~~~ 321 (401)
T 4aez_A 245 DARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVD-AGSQVTSL--IWSPHSKEIMST 321 (401)
T ss_dssp ETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEE-CSSCEEEE--EECSSSSEEEEE
T ss_pred cCCCCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEe-CCCcEEEE--EECCCCCeEEEE
Confidence 9999998887754 6899999999765 555544 79999999999999888886 45567666 89999999999
Q ss_pred -eeCCCcEEEEEecCCcceeEEEecccceeeeEEEEcCCCcEEEeec-CCeeEEEEccccc
Q psy18231 478 -GSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC-GNNVKLWTAEEDY 536 (540)
Q Consensus 478 -~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~-d~~i~iw~~~~~~ 536 (540)
|+.||.|++||+.+++........+|...|.+++|+|++++|++++ ||.|++|++.++.
T Consensus 322 ~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~~~~ 382 (401)
T 4aez_A 322 HGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFWRVYDGD 382 (401)
T ss_dssp ECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEECTTSSEEEEECTTSEEEEEECCC--
T ss_pred eecCCCcEEEEecCCccceeEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCc
Confidence 5589999999999977666554448999999999999999999999 9999999998764
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.4e-39 Score=304.25 Aligned_cols=282 Identities=15% Similarity=0.173 Sum_probs=242.9
Q ss_pred eeeecCeEEEEeCCCCCEEEEeeCCCcEEEEcCCCCeeEEEeecCCcceeEEEEeeCCCeEEEeeCCCeEEEEEcCCCce
Q psy18231 161 LFVLSGLMHTRFPVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQP 240 (540)
Q Consensus 161 ~~h~~~v~~v~~spdg~~lat~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~ 240 (540)
..|.++|.+++|+|||++++++..++.+.+|+...........+|...|++++|+|++++|++++ ||.|++||+.+++.
T Consensus 6 ~~~~~~v~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~ 84 (337)
T 1gxr_A 6 AMGSKPAYSFHVTADGQMQPVPFPPDALIGPGIPRHARQINTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGN 84 (337)
T ss_dssp EEEEEECCEEEECSSSCEEECCCCTTSSSSTTCCSEEEEEEEECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTC
T ss_pred cccCCceeEEEECCCCCEEEeecCCCcEeccccCCccccceeccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCc
Confidence 35778999999999999999888888787887766655555567999999999999999999999 99999999988754
Q ss_pred eE---ecc--ccCCceeEEEECCCCCEEEEecCCCcEEEEEecCCCCCCcchhhhhHhhhhcCCceeEEEEeeccccccc
Q psy18231 241 VR---RWR--EHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHL 315 (540)
Q Consensus 241 ~~---~~~--~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (540)
.. .+. .|...|.+++|+|++++|++++.||.|++||+++++...
T Consensus 85 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~------------------------------- 133 (337)
T 1gxr_A 85 KSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRI------------------------------- 133 (337)
T ss_dssp CSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EE-------------------------------
T ss_pred eeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcce-------------------------------
Confidence 33 222 789999999999999999999999999999998765211
Q ss_pred ccCceeeEEEeeeecccccceeeeeeccceeEEEeecccceecccccccccccchhhhhhcccccEEEEEecC--CeeEe
Q psy18231 316 SNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEARDSITSVHVSD--HEILT 393 (540)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~--~~l~~ 393 (540)
...+..|...|.+++|+| +.+++
T Consensus 134 -------------------------------------------------------~~~~~~~~~~i~~~~~~~~~~~l~~ 158 (337)
T 1gxr_A 134 -------------------------------------------------------KAELTSSAPACYALAISPDSKVCFS 158 (337)
T ss_dssp -------------------------------------------------------EEEEECSSSCEEEEEECTTSSEEEE
T ss_pred -------------------------------------------------------eeecccCCCceEEEEECCCCCEEEE
Confidence 113456788899999998 78999
Q ss_pred eeCCCeEEEEeCCCCceEEeeeC--CceEEEEEecCCcEEEeecCCCeEEEEeccccchhhhhccCcCCcceEEEEecCC
Q psy18231 394 ASLDCRIRRYDIRTGNLVTDYVG--EPIVDACFTRDCQCILTCSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSK 471 (540)
Q Consensus 394 ~~~dg~i~iwd~~~~~~~~~~~~--~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~s~~ 471 (540)
++.||.|++||+++++.+..+.. ..+.+++|+|++++|++++.||.|++||+++++.+..+. +...+..+ +|+|+
T Consensus 159 ~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~-~~~~v~~~--~~s~~ 235 (337)
T 1gxr_A 159 CCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHD-FTSQIFSL--GYCPT 235 (337)
T ss_dssp EETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEE--EECTT
T ss_pred EeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEEEecCCcEEEEECCCCceEeeec-CCCceEEE--EECCC
Confidence 99999999999999998888864 579999999999999999999999999999998877764 56667666 89999
Q ss_pred CCeEEEeeCCCcEEEEEecCCcceeEEEecccceeeeEEEEcCCCcEEEeec-CCeeEEEEcccc
Q psy18231 472 DSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC-GNNVKLWTAEED 535 (540)
Q Consensus 472 ~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~-d~~i~iw~~~~~ 535 (540)
+++|++++.|+.|++||+.+++.. .+. .|...|.+++|+|++++|++++ ||.|++|+++++
T Consensus 236 ~~~l~~~~~~~~i~~~~~~~~~~~-~~~--~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~ 297 (337)
T 1gxr_A 236 GEWLAVGMESSNVEVLHVNKPDKY-QLH--LHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYG 297 (337)
T ss_dssp SSEEEEEETTSCEEEEETTSSCEE-EEC--CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTC
T ss_pred CCEEEEEcCCCcEEEEECCCCCeE-EEc--CCccceeEEEECCCCCEEEEecCCCcEEEEECCCC
Confidence 999999999999999999887654 444 7999999999999999999999 999999999765
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7.3e-39 Score=304.59 Aligned_cols=282 Identities=11% Similarity=0.070 Sum_probs=238.7
Q ss_pred eeecCeEEEEeCCCCCEEEEeeCCCcEEEEcCCCCe---eEEEeecCCcceeEEEEeeCCC-eEEEeeCCCeEEEEEc-C
Q psy18231 162 FVLSGLMHTRFPVDGSYCLTCGSDKKIKLWNPYRNL---LLKTYGGHAHEVNDATAACDSS-QIASGASDKSVILWEV-T 236 (540)
Q Consensus 162 ~h~~~v~~v~~spdg~~lat~~~dg~i~iwd~~~~~---~~~~~~~h~~~v~~l~~sp~~~-~l~s~s~dg~i~iwd~-~ 236 (540)
.|.+.|++++|+|++++|++++.||.|++||+.+++ ....+.+|...|.+++|+|+++ +|++++.||.|++||+ .
T Consensus 9 ~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~ 88 (342)
T 1yfq_A 9 APKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIG 88 (342)
T ss_dssp CCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSS
T ss_pred CCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEEEecc
Confidence 689999999999999999999999999999998876 3455668999999999999999 9999999999999999 7
Q ss_pred CCceeEeccc--cCCceeEEEECCCCCEEEEecCCCcEEEEEecCCCCCCcchhhhhHhhhhcCCceeEEEEeecccccc
Q psy18231 237 TGQPVRRWRE--HASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNH 314 (540)
Q Consensus 237 ~~~~~~~~~~--h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (540)
+++. ..+.+ |...|.+++|+| +++|++++.||.|++||+++.......
T Consensus 89 ~~~~-~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~---------------------------- 138 (342)
T 1yfq_A 89 SPSF-QALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIA---------------------------- 138 (342)
T ss_dssp SSSE-EECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEE----------------------------
T ss_pred CCce-EeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEccccccccccc----------------------------
Confidence 7765 66778 999999999999 999999999999999998762100000
Q ss_pred cccCceeeEEEeeeecccccceeeeeeccceeEEEeecccceecccccccccccchhhhhhcccccEEEEEecCCeeEee
Q psy18231 315 LSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEARDSITSVHVSDHEILTA 394 (540)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~~~ 394 (540)
.....+..+. |...|.+++|+++.++++
T Consensus 139 ---------------------------------------------------~~~~~~~~~~-~~~~v~~~~~~~~~l~~~ 166 (342)
T 1yfq_A 139 ---------------------------------------------------VKNLNSNNTK-VKNKIFTMDTNSSRLIVG 166 (342)
T ss_dssp ---------------------------------------------------EEESCSSSSS-SCCCEEEEEECSSEEEEE
T ss_pred ---------------------------------------------------ccCCeeeEEe-eCCceEEEEecCCcEEEE
Confidence 0000111222 778999999999779999
Q ss_pred eCCCeEEEEeCCC-CceE--Eee--eCCceEEEEEec-CCcEEEeecCCCeEEEEecccc------chhhhhccCcC---
Q psy18231 395 SLDCRIRRYDIRT-GNLV--TDY--VGEPIVDACFTR-DCQCILTCSTDECLRLFDKATG------ELLEEYKGHKS--- 459 (540)
Q Consensus 395 ~~dg~i~iwd~~~-~~~~--~~~--~~~~i~~~~~sp-~~~~l~~~~~dg~i~i~d~~~~------~~~~~~~~~~~--- 459 (540)
+.|+.|++||+++ +... ... ....+.+++|+| +++++++++.||.|++||+... +....+..|..
T Consensus 167 ~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (342)
T 1yfq_A 167 MNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLK 246 (342)
T ss_dssp ESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTT
T ss_pred eCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccceeeeccccccc
Confidence 9999999999998 5432 122 236899999999 9999999999999999999887 77778888865
Q ss_pred ------CcceEEEEecCCCCeEEEeeCCCcEEEEEecCCcceeEEEeccc-ceeeeEEEEcCCCcEEEeec-CCe-eEEE
Q psy18231 460 ------GDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVG-KAVVNSLCSHPTRKHIMSAC-GNN-VKLW 530 (540)
Q Consensus 460 ------~v~~~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~-~~~v~~l~~s~d~~~l~s~~-d~~-i~iw 530 (540)
.+..+ +|+|++++|++++.||.|++||+.+++.+..+. .| ...|.+++ |++++|++++ ||. .+.|
T Consensus 247 ~~~~~~~i~~~--~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~--~~h~~~v~~~~--~~~~~l~s~s~Dg~~~~~~ 320 (342)
T 1yfq_A 247 DTNLAYPVNSI--EFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFA--KFNEDSVVKIA--CSDNILCLATSDDTFKTNA 320 (342)
T ss_dssp CCSSCCCEEEE--EECTTTCCEEEEETTSCEEEEETTTTEEEEECC--CCSSSEEEEEE--ECSSEEEEEEECTHHHHCS
T ss_pred ccccceeEEEE--EEcCCCCEEEEecCCceEEEEcCccHhHhhhhh--cccCCCceEec--CCCCeEEEEecCCcccccc
Confidence 67766 899999999999999999999999999998887 77 99999999 9999999999 998 4444
Q ss_pred E
Q psy18231 531 T 531 (540)
Q Consensus 531 ~ 531 (540)
.
T Consensus 321 ~ 321 (342)
T 1yfq_A 321 A 321 (342)
T ss_dssp S
T ss_pred c
Confidence 4
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7e-39 Score=297.70 Aligned_cols=243 Identities=16% Similarity=0.216 Sum_probs=204.9
Q ss_pred eeeecCeEEEEeCCCCCEEEEeeCCCcEEEEcCCC--CeeEEEeecCCcceeEEEEee--CCCeEEEeeCCCeEEEEEcC
Q psy18231 161 LFVLSGLMHTRFPVDGSYCLTCGSDKKIKLWNPYR--NLLLKTYGGHAHEVNDATAAC--DSSQIASGASDKSVILWEVT 236 (540)
Q Consensus 161 ~~h~~~v~~v~~spdg~~lat~~~dg~i~iwd~~~--~~~~~~~~~h~~~v~~l~~sp--~~~~l~s~s~dg~i~iwd~~ 236 (540)
.+|.+.|.+++|+|+|++||+|+.|++|+|||+.+ .+.+.++.+|.+.|++++|+| ++++|++|+.|++|++||++
T Consensus 6 ~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~ 85 (297)
T 2pm7_B 6 NAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEE 85 (297)
T ss_dssp CSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEBS
T ss_pred cCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcC
Confidence 46999999999999999999999999999999874 467889999999999999986 48999999999999999998
Q ss_pred CCc--eeEeccccCCceeEEEECCC--CCEEEEecCCCcEEEEEecCCCCCCcchhhhhHhhhhcCCceeEEEEeecccc
Q psy18231 237 TGQ--PVRRWREHASKVTCVKFNED--SSVVISGSQDNTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTK 312 (540)
Q Consensus 237 ~~~--~~~~~~~h~~~v~~~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (540)
+++ .+..+.+|...|.+++|+|+ +.+|++++.||+|++||+++......
T Consensus 86 ~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~--------------------------- 138 (297)
T 2pm7_B 86 NGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSP--------------------------- 138 (297)
T ss_dssp SSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCC---------------------------
T ss_pred CCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceee---------------------------
Confidence 874 55667889999999999997 88999999999999999986531000
Q ss_pred cccccCceeeEEEeeeecccccceeeeeeccceeEEEeecccceecccccccccccchhhhhhcccccEEEEEecC----
Q psy18231 313 NHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEARDSITSVHVSD---- 388 (540)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~---- 388 (540)
..+.+|...|.+++|+|
T Consensus 139 -----------------------------------------------------------~~~~~h~~~v~~~~~~p~~~~ 159 (297)
T 2pm7_B 139 -----------------------------------------------------------IIIDAHAIGVNSASWAPATIE 159 (297)
T ss_dssp -----------------------------------------------------------EEEECCSSCEEEEEECCCC--
T ss_pred -----------------------------------------------------------eeeecccCccceEeecCCccc
Confidence 13446777888888877
Q ss_pred -----------CeeEeeeCCCeEEEEeCCCCc----eEEeeeC--CceEEEEEecCC---cEEEeecCCCeEEEEecccc
Q psy18231 389 -----------HEILTASLDCRIRRYDIRTGN----LVTDYVG--EPIVDACFTRDC---QCILTCSTDECLRLFDKATG 448 (540)
Q Consensus 389 -----------~~l~~~~~dg~i~iwd~~~~~----~~~~~~~--~~i~~~~~sp~~---~~l~~~~~dg~i~i~d~~~~ 448 (540)
.+|++++.|+.|++||+++++ ....+.+ ..|.+++|+|++ ++|++++.|++|++||+.+.
T Consensus 160 ~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~ 239 (297)
T 2pm7_B 160 EDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNE 239 (297)
T ss_dssp ----------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESST
T ss_pred ccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCCC
Confidence 379999999999999998766 4455654 579999999984 89999999999999998764
Q ss_pred ch---hhhh--ccCcCCcceEEEEecCCCCeEEEeeCCCcEEEEEecC
Q psy18231 449 EL---LEEY--KGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVD 491 (540)
Q Consensus 449 ~~---~~~~--~~~~~~v~~~~~~~s~~~~~l~s~s~dg~i~iwd~~~ 491 (540)
.. ...+ ..|...+..+ +|+|++++|++++.||+|++|+...
T Consensus 240 ~~~~~~~~~~~~~~~~~v~~~--~~s~~g~~las~~~D~~v~lw~~~~ 285 (297)
T 2pm7_B 240 QGPWKKTLLKEEKFPDVLWRA--SWSLSGNVLALSGGDNKVTLWKENL 285 (297)
T ss_dssp TSCCEEEESSSSCCSSCEEEE--EECSSSCCEEEEETTSCEEEEEECT
T ss_pred CCccceeeeecccCCCcEEEE--EECCCCCEEEEEcCCCcEEEEEECC
Confidence 31 1122 4667777766 8999999999999999999999763
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-38 Score=297.39 Aligned_cols=271 Identities=23% Similarity=0.371 Sum_probs=234.8
Q ss_pred ceeccccchhhhhhcccccceeeeecccccce---eeeeecCeEEEEeCCCCCEEEEeeCCCcEEEEcCCCCeeEEEeec
Q psy18231 128 LLFSLPRTITRILYELPKEWSIRVYRPLTVNR---ELFVLSGLMHTRFPVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGG 204 (540)
Q Consensus 128 ~~~s~~~~~~~~~~~~~~~~~i~~~~~~~~~~---~~~h~~~v~~v~~spdg~~lat~~~dg~i~iwd~~~~~~~~~~~~ 204 (540)
+.|+++ ...+++++.++.|++|+..+... ...|...|.+++|+|++++|++++.|+.|++||+.+++.+..+.+
T Consensus 29 ~~~s~~---~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~ 105 (312)
T 4ery_A 29 VKFSPN---GEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKG 105 (312)
T ss_dssp EEECTT---SSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEEC
T ss_pred EEECCC---CCEEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcCCCCEEEEECCCCEEEEEECCCCcEEEEEcC
Confidence 445554 34566778999999999876542 345899999999999999999999999999999999999999999
Q ss_pred CCcceeEEEEeeCCCeEEEeeCCCeEEEEEcCCCceeEeccccCCceeEEEECCCCCEEEEecCCCcEEEEEecCCCCCC
Q psy18231 205 HAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHP 284 (540)
Q Consensus 205 h~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~ 284 (540)
|...|.+++|+|++++|++++.|++|++||+++++.+..+..|...|.+++|+|++++|++++.||.|++||+++++.
T Consensus 106 ~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~-- 183 (312)
T 4ery_A 106 HSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQC-- 183 (312)
T ss_dssp CSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCE--
T ss_pred CCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCce--
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999987651
Q ss_pred cchhhhhHhhhhcCCceeEEEEeecccccccccCceeeEEEeeeecccccceeeeeeccceeEEEeecccceeccccccc
Q psy18231 285 IQVRCLNEALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPI 364 (540)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (540)
..
T Consensus 184 ~~------------------------------------------------------------------------------ 185 (312)
T 4ery_A 184 LK------------------------------------------------------------------------------ 185 (312)
T ss_dssp EE------------------------------------------------------------------------------
T ss_pred ee------------------------------------------------------------------------------
Confidence 00
Q ss_pred ccccchhhhhhcccccEEEEEecC--CeeEeeeCCCeEEEEeCCCCceEEeeeCC--c---eEEEEEecCCcEEEeecCC
Q psy18231 365 SIHNSCFQALKEARDSITSVHVSD--HEILTASLDCRIRRYDIRTGNLVTDYVGE--P---IVDACFTRDCQCILTCSTD 437 (540)
Q Consensus 365 ~~~~~~~~~~~~~~~~v~~l~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~--~---i~~~~~sp~~~~l~~~~~d 437 (540)
.....+...+..++|+| +++++++.|+.|++||+++++.+..+.++ . +......+++.+|++|+.|
T Consensus 186 -------~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~d 258 (312)
T 4ery_A 186 -------TLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSED 258 (312)
T ss_dssp -------EECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECSSCCSSSCCCEEEECSSSCEEEECCTT
T ss_pred -------EEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEEecCCceEEEEEEEEeCCCcEEEEECCC
Confidence 01123456788899998 78999999999999999999988888653 1 2333334688999999999
Q ss_pred CeEEEEeccccchhhhhccCcCCcceEEEEecCCCCeEEEee--CCCcEEEEEec
Q psy18231 438 ECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGS--SDGKIYKWQLV 490 (540)
Q Consensus 438 g~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~s~~~~~l~s~s--~dg~i~iwd~~ 490 (540)
|.|++||+.+++.+..+.+|...+..+ +|+|++++|++++ .|++|++|+..
T Consensus 259 g~i~vwd~~~~~~~~~~~~h~~~v~~~--~~~p~~~~l~s~~~~~d~~i~~W~~d 311 (312)
T 4ery_A 259 NLVYIWNLQTKEIVQKLQGHTDVVIST--ACHPTENIIASAALENDKTIKLWKSD 311 (312)
T ss_dssp SCEEEEETTTCCEEEEECCCSSCEEEE--EECSSSSEEEEEECTTTCCEEEEECC
T ss_pred CEEEEEECCCchhhhhhhccCCcEEEE--eecCcCCceEEEEccCCccEEEecCC
Confidence 999999999999999999999988877 8999999999987 69999999853
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-38 Score=307.54 Aligned_cols=279 Identities=22% Similarity=0.318 Sum_probs=226.6
Q ss_pred Ccceeccccchhhhhhcccccceeeeecccccceee---ee------------------ecCeEEEEeCCCCCEEEEeeC
Q psy18231 126 HPLLFSLPRTITRILYELPKEWSIRVYRPLTVNREL---FV------------------LSGLMHTRFPVDGSYCLTCGS 184 (540)
Q Consensus 126 ~~~~~s~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~---~h------------------~~~v~~v~~spdg~~lat~~~ 184 (540)
..+.|+++.. .++.+. +..+++|+..+..... .| ...|.+++|+|||++|++|+.
T Consensus 68 ~~v~fspdg~---~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~s~~~ 143 (393)
T 1erj_A 68 CCVKFSNDGE---YLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAE 143 (393)
T ss_dssp CEEEECTTSS---EEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEEEET
T ss_pred EEEEECCCCC---EEEEEc-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEEEEEcC
Confidence 3455666532 333433 5788999887654321 12 124999999999999999999
Q ss_pred CCcEEEEcCCCCeeEEEeecCCcceeEEEEeeCCCeEEEeeCCCeEEEEEcCCCceeEeccccCCceeEEEECC-CCCEE
Q psy18231 185 DKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNE-DSSVV 263 (540)
Q Consensus 185 dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l 263 (540)
|++|++||+.+++.+..+.+|...|++++|+|++++|++++.|++|++||+++++....+. +...+.+++|+| ++++|
T Consensus 144 d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l 222 (393)
T 1erj_A 144 DRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLS-IEDGVTTVAVSPGDGKYI 222 (393)
T ss_dssp TSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECSTTCCEE
T ss_pred CCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEEE-cCCCcEEEEEECCCCCEE
Confidence 9999999999999999999999999999999999999999999999999999998877764 667899999999 89999
Q ss_pred EEecCCCcEEEEEecCCCCCCcchhhhhHhhhhcCCceeEEEEeecccccccccCceeeEEEeeeecccccceeeeeecc
Q psy18231 264 ISGSQDNTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMST 343 (540)
Q Consensus 264 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (540)
++++.||.|++||++++......
T Consensus 223 ~~~s~d~~v~iwd~~~~~~~~~~--------------------------------------------------------- 245 (393)
T 1erj_A 223 AAGSLDRAVRVWDSETGFLVERL--------------------------------------------------------- 245 (393)
T ss_dssp EEEETTSCEEEEETTTCCEEEEE---------------------------------------------------------
T ss_pred EEEcCCCcEEEEECCCCcEEEee---------------------------------------------------------
Confidence 99999999999999876520000
Q ss_pred ceeEEEeecccceecccccccccccchhhhhhcccccEEEEEecC--CeeEeeeCCCeEEEEeCCCCc------------
Q psy18231 344 QHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEARDSITSVHVSD--HEILTASLDCRIRRYDIRTGN------------ 409 (540)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~--~~l~~~~~dg~i~iwd~~~~~------------ 409 (540)
........+|...|.+++|+| .++++++.|+.|++||+++..
T Consensus 246 ------------------------~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~ 301 (393)
T 1erj_A 246 ------------------------DSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGT 301 (393)
T ss_dssp ------------------------C------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC---------------C
T ss_pred ------------------------cccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCcccccCCCCCc
Confidence 000012357889999999998 789999999999999998643
Q ss_pred eEEeeeC--CceEEEEEecCCcEEEeecCCCeEEEEeccccchhhhhccCcCCcceEEEEec------CCCCeEEEeeCC
Q psy18231 410 LVTDYVG--EPIVDACFTRDCQCILTCSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLD------SKDSQIFCGSSD 481 (540)
Q Consensus 410 ~~~~~~~--~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~s------~~~~~l~s~s~d 481 (540)
+...+.+ ..|.+++|+|++++|++|+.|+.|++||..+++.+..+.+|...|..+ +|+ |++++|++|+.|
T Consensus 302 ~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h~~~v~~v--~~~~~~~~~p~~~~l~sgs~D 379 (393)
T 1erj_A 302 CEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISV--AVANGSSLGPEYNVFATGSGD 379 (393)
T ss_dssp EEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEE--EECSSCTTCTTCEEEEEEETT
T ss_pred ceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEECCCCCCEEEE--EecCCcCcCCCCCEEEEECCC
Confidence 3344444 469999999999999999999999999999999999999999999888 554 478899999999
Q ss_pred CcEEEEEecCC
Q psy18231 482 GKIYKWQLVDS 492 (540)
Q Consensus 482 g~i~iwd~~~~ 492 (540)
|+|++|++...
T Consensus 380 g~i~iW~~~~~ 390 (393)
T 1erj_A 380 CKARIWKYKKI 390 (393)
T ss_dssp SEEEEEEEEEC
T ss_pred CcEEECccccc
Confidence 99999998654
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A | Back alignment and structure |
|---|
Probab=100.00 E-value=9.5e-39 Score=296.83 Aligned_cols=247 Identities=17% Similarity=0.197 Sum_probs=207.7
Q ss_pred EEeecCCcceeEEEEeeCCCeEEEeeCCCeEEEEEcCC--CceeEeccccCCceeEEEECC--CCCEEEEecCCCcEEEE
Q psy18231 200 KTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTT--GQPVRRWREHASKVTCVKFNE--DSSVVISGSQDNTVMMW 275 (540)
Q Consensus 200 ~~~~~h~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~--~~~~~~~~~h~~~v~~~~~~~--~~~~l~s~~~dg~i~iw 275 (540)
..+.+|.+.|++++|+|+|++||+|+.|++|+|||+.. .+.+..+.+|.+.|.+++|++ ++++|++++.||+|++|
T Consensus 3 ~~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iW 82 (297)
T 2pm7_B 3 VIANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIW 82 (297)
T ss_dssp EECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEE
T ss_pred eeccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEE
Confidence 45678999999999999999999999999999999975 367788999999999999986 38999999999999999
Q ss_pred EecCCCCCCcchhhhhHhhhhcCCceeEEEEeecccccccccCceeeEEEeeeecccccceeeeeeccceeEEEeecccc
Q psy18231 276 DVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGS 355 (540)
Q Consensus 276 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (540)
|+++++....
T Consensus 83 d~~~~~~~~~---------------------------------------------------------------------- 92 (297)
T 2pm7_B 83 KEENGRWSQI---------------------------------------------------------------------- 92 (297)
T ss_dssp EBSSSCBCCC----------------------------------------------------------------------
T ss_pred EcCCCceEEE----------------------------------------------------------------------
Confidence 9987642111
Q ss_pred eecccccccccccchhhhhhcccccEEEEEecC----CeeEeeeCCCeEEEEeCCCCce--EEeee--CCceEEEEEecC
Q psy18231 356 TQIGDVTPISIHNSCFQALKEARDSITSVHVSD----HEILTASLDCRIRRYDIRTGNL--VTDYV--GEPIVDACFTRD 427 (540)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~----~~l~~~~~dg~i~iwd~~~~~~--~~~~~--~~~i~~~~~sp~ 427 (540)
..+..|...|.+++|+| .+|++++.|+.|++||++++.. ...+. ...|.+++|+|+
T Consensus 93 ----------------~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~ 156 (297)
T 2pm7_B 93 ----------------AVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPA 156 (297)
T ss_dssp ----------------EEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCC
T ss_pred ----------------EEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCC
Confidence 13456888999999987 4799999999999999987632 23333 357999999997
Q ss_pred -------------CcEEEeecCCCeEEEEeccccc----hhhhhccCcCCcceEEEEecCCC---CeEEEeeCCCcEEEE
Q psy18231 428 -------------CQCILTCSTDECLRLFDKATGE----LLEEYKGHKSGDFRIECCLDSKD---SQIFCGSSDGKIYKW 487 (540)
Q Consensus 428 -------------~~~l~~~~~dg~i~i~d~~~~~----~~~~~~~~~~~v~~~~~~~s~~~---~~l~s~s~dg~i~iw 487 (540)
+++|++|+.|+.|++||+++++ ....+.+|...|..+ +|+|++ .+|++++.|++|++|
T Consensus 157 ~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v--~~sp~~~~~~~las~s~D~~v~iW 234 (297)
T 2pm7_B 157 TIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDV--AWSPTVLLRSYMASVSQDRTCIIW 234 (297)
T ss_dssp C------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEE--EECCCCSSSEEEEEEETTSCEEEE
T ss_pred cccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEE--EECCCCCCceEEEEEECCCcEEEE
Confidence 5799999999999999998765 566788999999888 899985 789999999999999
Q ss_pred EecCCcc--e-eEEEecccceeeeEEEEcCCCcEEEeec-CCeeEEEEccc
Q psy18231 488 QLVDSSQ--I-STLIHSVGKAVVNSLCSHPTRKHIMSAC-GNNVKLWTAEE 534 (540)
Q Consensus 488 d~~~~~~--~-~~~~~~~~~~~v~~l~~s~d~~~l~s~~-d~~i~iw~~~~ 534 (540)
|+.+... . ..+....|...|.+++|+|++++|++++ |++|++|+...
T Consensus 235 d~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~~ 285 (297)
T 2pm7_B 235 TQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL 285 (297)
T ss_dssp EESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEECT
T ss_pred EeCCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEECC
Confidence 9987532 1 2221136788999999999999999999 99999999863
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-38 Score=354.16 Aligned_cols=358 Identities=19% Similarity=0.266 Sum_probs=279.6
Q ss_pred eeeeecCeEEEEeCCCCCEEEEeeCCCcEEEEcCCCCeeEEEeecCCcceeEEEEeeCCCeEEEeeCCCeEEEEEcCCCc
Q psy18231 160 ELFVLSGLMHTRFPVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQ 239 (540)
Q Consensus 160 ~~~h~~~v~~v~~spdg~~lat~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~ 239 (540)
..+|.+.|++++|+|||++||+|+.||+|++||+.+++.+..+.+|.+.|.+++|+|++++|++++.|++|++||+.+++
T Consensus 611 ~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~ 690 (1249)
T 3sfz_A 611 VRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGK 690 (1249)
T ss_dssp ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCC
T ss_pred EecccccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCCCc
Confidence 34699999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeEeccccCCceeEEEECC--CCCEEEEecCCCcEEEEEecCCCCCCcchhhhhHhhhhcCCceeEEEEeeccccc-ccc
Q psy18231 240 PVRRWREHASKVTCVKFNE--DSSVVISGSQDNTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKN-HLS 316 (540)
Q Consensus 240 ~~~~~~~h~~~v~~~~~~~--~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 316 (540)
.+..+.+|...|.+++|+| ++.++++++.||.|++||+++++... .+..+...+. .+.+.+.+ .+.
T Consensus 691 ~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~--------~~~~h~~~v~---~~~~sp~~~~l~ 759 (1249)
T 3sfz_A 691 LVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRN--------TMFGHTNSVN---HCRFSPDDELLA 759 (1249)
T ss_dssp EEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEE--------EECCCSSCEE---EEEECSSTTEEE
T ss_pred eEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhh--------eecCCCCCEE---EEEEecCCCEEE
Confidence 9999999999999999999 55689999999999999998876311 1122333333 33333332 333
Q ss_pred cCceeeEEEeeeecccc----------------------cceeeeeeccceeEEEeecccceecccccccccccchhhhh
Q psy18231 317 NGLLTKLVFAFRCKYLN----------------------GLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQAL 374 (540)
Q Consensus 317 ~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (540)
.+.....+..|+..... ..+..+.++.++...+....+...+++....... ....
T Consensus 760 s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~---~~~~ 836 (1249)
T 3sfz_A 760 SCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLL---AEIH 836 (1249)
T ss_dssp EEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEE---EEEE
T ss_pred EEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCce---eEEc
Confidence 34444444444432211 1222333444444444444444444443322111 1123
Q ss_pred hcccccEEEEEecC--CeeEeeeCCCeEEEEeCCCCceEEeeeC--CceEEEEEecCCcEEEeecCCCeEEEEeccccch
Q psy18231 375 KEARDSITSVHVSD--HEILTASLDCRIRRYDIRTGNLVTDYVG--EPIVDACFTRDCQCILTCSTDECLRLFDKATGEL 450 (540)
Q Consensus 375 ~~~~~~v~~l~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~--~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~ 450 (540)
.+|...|.+++|+| ..+++++.||.|++||+.++..+..+.+ ..|.+++|+|++++|++++.||.|++||+.+...
T Consensus 837 ~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~ 916 (1249)
T 3sfz_A 837 TGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCK 916 (1249)
T ss_dssp CSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEHHHHHS
T ss_pred CCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCccceEEEEECCCCCEEEEEeCCCeEEEEEccccce
Confidence 47889999999999 8899999999999999999999888876 5799999999999999999999999999764321
Q ss_pred hhh-----------------------------h--------ccCcCCcceEEEEecCCCCeEEEeeCCCcEEEEEecCCc
Q psy18231 451 LEE-----------------------------Y--------KGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSS 493 (540)
Q Consensus 451 ~~~-----------------------------~--------~~~~~~v~~~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~ 493 (540)
... . ..+...+.++ +++|+++++++|+.||.|++||+.+++
T Consensus 917 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~--~~sp~g~~l~~g~~~g~i~i~d~~~~~ 994 (1249)
T 3sfz_A 917 NSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCC--CLSPHLEYVAFGDEDGAIKIIELPNNR 994 (1249)
T ss_dssp CCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEE--EECTTSSEEEEEETTSCCEEEETTTTS
T ss_pred eeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEE--EEcCCCCEEEEEcCCCCEEEEEcCCCc
Confidence 100 0 0122334444 899999999999999999999999999
Q ss_pred ceeEEEecccceeeeEEEEcCCCcEEEeec-CCeeEEEEcccc
Q psy18231 494 QISTLIHSVGKAVVNSLCSHPTRKHIMSAC-GNNVKLWTAEED 535 (540)
Q Consensus 494 ~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~-d~~i~iw~~~~~ 535 (540)
....+. +|...|++++|+|++++|++++ |+.|++|++.++
T Consensus 995 ~~~~~~--~h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~ 1035 (1249)
T 3sfz_A 995 VFSSGV--GHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTG 1035 (1249)
T ss_dssp CEEECC--CCSSCCCCEEECSSSSCEEEECSSSBEEEEETTTT
T ss_pred eeeecc--cCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCC
Confidence 988887 8999999999999999999999 999999998765
|
| >4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-39 Score=309.40 Aligned_cols=279 Identities=12% Similarity=0.126 Sum_probs=218.8
Q ss_pred cCeEEEEeCCCCCEEEEeeCCC-------cEEEEcCCCCee----------EEEeecCCcceeEEEEeeCCCeEEEe---
Q psy18231 165 SGLMHTRFPVDGSYCLTCGSDK-------KIKLWNPYRNLL----------LKTYGGHAHEVNDATAACDSSQIASG--- 224 (540)
Q Consensus 165 ~~v~~v~~spdg~~lat~~~dg-------~i~iwd~~~~~~----------~~~~~~h~~~v~~l~~sp~~~~l~s~--- 224 (540)
-||++++|+|||++|++|+.+. .|++|++..+.. ...+.+|...|.+++++ ++.+++|
T Consensus 15 ~PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~--~~~~~~g~~~ 92 (365)
T 4h5i_A 15 YPAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDAS--KGIILVGCNE 92 (365)
T ss_dssp SCEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEE--TTEEEEECCC
T ss_pred CCEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeC--CCEEEEEECC
Confidence 5899999999999999987543 599999865421 23456788888887664 5666665
Q ss_pred --------eCCCeEEEEEcCCCceeEe---------ccccCCceeEEEECCCCCEEEE--ecCCCcEEEEEecCCCCCCc
Q psy18231 225 --------ASDKSVILWEVTTGQPVRR---------WREHASKVTCVKFNEDSSVVIS--GSQDNTVMMWDVKSRSHHPI 285 (540)
Q Consensus 225 --------s~dg~i~iwd~~~~~~~~~---------~~~h~~~v~~~~~~~~~~~l~s--~~~dg~i~iwd~~~~~~~~~ 285 (540)
+.|+++++|++........ ...+...+.+++|+|||+++++ ++.|++|++||+++++. .
T Consensus 93 ~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~--~ 170 (365)
T 4h5i_A 93 NSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTE--K 170 (365)
T ss_dssp CHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEE--E
T ss_pred CccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcE--E
Confidence 4578899999876542211 1234566899999999998764 45789999999987652 0
Q ss_pred chhhhhHhhhhcCCceeEEEEeecccccccccCceeeEEEeeeecccccceeeeeeccceeEEEeecccceecccccccc
Q psy18231 286 QVRCLNEALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPIS 365 (540)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 365 (540)
T Consensus 171 -------------------------------------------------------------------------------- 170 (365)
T 4h5i_A 171 -------------------------------------------------------------------------------- 170 (365)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccchhhhhhcccccEEEEEecC--CeeEeeeCCCeEEEEeCCCCceEEeee----CCceEEEEEecCCcEEEeecCCC-
Q psy18231 366 IHNSCFQALKEARDSITSVHVSD--HEILTASLDCRIRRYDIRTGNLVTDYV----GEPIVDACFTRDCQCILTCSTDE- 438 (540)
Q Consensus 366 ~~~~~~~~~~~~~~~v~~l~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~----~~~i~~~~~sp~~~~l~~~~~dg- 438 (540)
..+ .|...|.+++|+| +++++++ ++.+.+|+..+++.+.... ...+.+++|+|+++++++++.|+
T Consensus 171 ------~~~-~~~~~V~~v~fspdg~~l~s~s-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~ 242 (365)
T 4h5i_A 171 ------FEI-ETRGEVKDLHFSTDGKVVAYIT-GSSLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIAASLKKG 242 (365)
T ss_dssp ------EEE-ECSSCCCEEEECTTSSEEEEEC-SSCEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSS
T ss_pred ------EEe-CCCCceEEEEEccCCceEEecc-ceeEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCc
Confidence 012 3667899999999 6676766 5557777777776654332 24699999999999999999887
Q ss_pred ---eEEEEeccccch----hhhhccCcCCcceEEEEecCCCCeEEEeeCCCcEEEEEecCCcceeEEEecccceeeeEEE
Q psy18231 439 ---CLRLFDKATGEL----LEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLC 511 (540)
Q Consensus 439 ---~i~i~d~~~~~~----~~~~~~~~~~v~~~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~ 511 (540)
.+++||+..... ...+.+|...|+++ +|+|||++||+|+.|++|+|||+.+++++..+.. +|...|++++
T Consensus 243 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~--~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~-gH~~~V~~v~ 319 (365)
T 4h5i_A 243 KGIVLTKISIKSGNTSVLRSKQVTNRFKGITSM--DVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQ-AHSFAITEVT 319 (365)
T ss_dssp CCEEEEEEEEETTEEEEEEEEEEESSCSCEEEE--EECTTSCEEEEEETTSCEEEEETTTTEEEEEETT-SSSSCEEEEE
T ss_pred ceeEEeecccccceecceeeeeecCCCCCeEeE--EECCCCCceEEEcCCCEEEEEECCCCcEEEEecC-cccCCEEEEE
Confidence 688899876543 35677888888887 8999999999999999999999999999887632 8999999999
Q ss_pred EcCCCcEEEeec-CCeeEEEEcccccCC
Q psy18231 512 SHPTRKHIMSAC-GNNVKLWTAEEDYGQ 538 (540)
Q Consensus 512 ~s~d~~~l~s~~-d~~i~iw~~~~~~~~ 538 (540)
|||||++|++++ |++|+||+++..+..
T Consensus 320 fSpdg~~laS~S~D~tvrvw~ip~~~~~ 347 (365)
T 4h5i_A 320 ISPDSTYVASVSAANTIHIIKLPLNYAN 347 (365)
T ss_dssp ECTTSCEEEEEETTSEEEEEECCTTTTC
T ss_pred ECCCCCEEEEEeCCCeEEEEEcCCCCcC
Confidence 999999999999 999999999877654
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=8.3e-39 Score=314.36 Aligned_cols=274 Identities=25% Similarity=0.393 Sum_probs=241.6
Q ss_pred eeecCeEEEEeCCCCCEEEEeeCCCcEEEEcCCCCeeEEEeecCCcceeEEEEeeCCCeEEEeeCCCeEEEEEcCCCcee
Q psy18231 162 FVLSGLMHTRFPVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPV 241 (540)
Q Consensus 162 ~h~~~v~~v~~spdg~~lat~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~ 241 (540)
.|...|.+++| ++++|++|+.||+|++||+.+++.+..+.+|.+.|.+++| ++++|++|+.||+|++||+.+++.+
T Consensus 131 ~~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~ 206 (435)
T 1p22_A 131 ETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEML 206 (435)
T ss_dssp SSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEE
T ss_pred CCCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCCeEEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCCcEE
Confidence 46678999887 7899999999999999999999999999999999999999 7899999999999999999999999
Q ss_pred EeccccCCceeEEEECCCCCEEEEecCCCcEEEEEecCCCCCCcchhhhhHhhhhcCCceeEEEEeecccccccccCcee
Q psy18231 242 RRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHLSNGLLT 321 (540)
Q Consensus 242 ~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (540)
..+.+|...|.+++|++ ..+++++.||.|++||++++.....
T Consensus 207 ~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~------------------------------------ 248 (435)
T 1p22_A 207 NTLIHHCEAVLHLRFNN--GMMVTCSKDRSIAVWDMASPTDITL------------------------------------ 248 (435)
T ss_dssp EEECCCCSCEEEEECCT--TEEEEEETTSCEEEEECSSSSCCEE------------------------------------
T ss_pred EEEcCCCCcEEEEEEcC--CEEEEeeCCCcEEEEeCCCCCCcee------------------------------------
Confidence 99999999999999974 5999999999999999987652100
Q ss_pred eEEEeeeecccccceeeeeeccceeEEEeecccceecccccccccccchhhhhhcccccEEEEEecCCeeEeeeCCCeEE
Q psy18231 322 KLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEARDSITSVHVSDHEILTASLDCRIR 401 (540)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~dg~i~ 401 (540)
...+.+|...|.+++++++.+++++.||.|+
T Consensus 249 -------------------------------------------------~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~ 279 (435)
T 1p22_A 249 -------------------------------------------------RRVLVGHRAAVNVVDFDDKYIVSASGDRTIK 279 (435)
T ss_dssp -------------------------------------------------EEEECCCSSCEEEEEEETTEEEEEETTSEEE
T ss_pred -------------------------------------------------eeEecCCCCcEEEEEeCCCEEEEEeCCCeEE
Confidence 0145578899999999889999999999999
Q ss_pred EEeCCCCceEEeeeC--CceEEEEEecCCcEEEeecCCCeEEEEeccccchhhhhccCcCCcceEEEEecCCCCeEEEee
Q psy18231 402 RYDIRTGNLVTDYVG--EPIVDACFTRDCQCILTCSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGS 479 (540)
Q Consensus 402 iwd~~~~~~~~~~~~--~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~s~~~~~l~s~s 479 (540)
+||+++++.+..+.+ ..+.++.+ +++++++|+.||.|++||+++++.+..+.+|...+.++ +| ++.+|++|+
T Consensus 280 vwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~--~~--~~~~l~sg~ 353 (435)
T 1p22_A 280 VWNTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCI--RF--DNKRIVSGA 353 (435)
T ss_dssp EEETTTCCEEEEEECCSSCEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEE--EC--CSSEEEEEE
T ss_pred EEECCcCcEEEEEcCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCCCCEEEEEeCCcCcEEEE--Ee--cCCEEEEEe
Confidence 999999999988876 46888888 57899999999999999999999999999999998877 55 788999999
Q ss_pred CCCcEEEEEecCCc---------ceeEEEecccceeeeEEEEcCCCcEEEeec-CCeeEEEEccccc
Q psy18231 480 SDGKIYKWQLVDSS---------QISTLIHSVGKAVVNSLCSHPTRKHIMSAC-GNNVKLWTAEEDY 536 (540)
Q Consensus 480 ~dg~i~iwd~~~~~---------~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~-d~~i~iw~~~~~~ 536 (540)
.||.|++||+.+++ .+..+. +|.+.|.+++| ++.+|++++ ||+|++||+.++.
T Consensus 354 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~--~h~~~v~~l~~--~~~~l~s~s~Dg~i~iwd~~~~~ 416 (435)
T 1p22_A 354 YDGKIKVWDLVAALDPRAPAGTLCLRTLV--EHSGRVFRLQF--DEFQIVSSSHDDTILIWDFLNDP 416 (435)
T ss_dssp TTSCEEEEEHHHHTSTTSCTTTTEEEEEC--CCSSCCCCEEE--CSSCEEECCSSSEEEEEC-----
T ss_pred CCCcEEEEECCCCCCccccccchheeecc--CCCCCeEEEEe--CCCEEEEEeCCCEEEEEECCCCC
Confidence 99999999998766 677777 89999999999 788999999 9999999998764
|
| >4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-38 Score=309.82 Aligned_cols=274 Identities=16% Similarity=0.289 Sum_probs=234.4
Q ss_pred CeEEEEeCCCCCEEEEeeCCCcEEEEcCCCCeeEEEee--cCCcceeEEEEeeCCCeEEEeeCCCeEEEEEcCCCceeEe
Q psy18231 166 GLMHTRFPVDGSYCLTCGSDKKIKLWNPYRNLLLKTYG--GHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPVRR 243 (540)
Q Consensus 166 ~v~~v~~spdg~~lat~~~dg~i~iwd~~~~~~~~~~~--~h~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~ 243 (540)
.++.|+||++ ++||+|. |++|+|||..+++....+. +|...|++++|+|+|++|++|+.||+|+|||+++++.+..
T Consensus 107 y~~~l~wS~~-n~lAvgl-d~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~ 184 (420)
T 4gga_A 107 YLNLVDWSSG-NVLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRN 184 (420)
T ss_dssp TCBCEEECTT-SEEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEE
T ss_pred cceeEEECCC-CEEEEEe-CCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEE
Confidence 4678999986 4787775 9999999999998877664 6778899999999999999999999999999999999999
Q ss_pred ccccCCceeEEEECCCCCEEEEecCCCcEEEEEecCCCCCCcchhhhhHhhhhcCCceeEEEEeecccccccccCceeeE
Q psy18231 244 WREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHLSNGLLTKL 323 (540)
Q Consensus 244 ~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (540)
+.+|...+.+++++ +.+|++|+.|+.+++||......
T Consensus 185 ~~~h~~~v~~~s~~--~~~l~sgs~d~~i~~~d~~~~~~----------------------------------------- 221 (420)
T 4gga_A 185 MTSHSARVGSLSWN--SYILSSGSRSGHIHHHDVRVAEH----------------------------------------- 221 (420)
T ss_dssp ECCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSSC-----------------------------------------
T ss_pred EeCCCCceEEEeeC--CCEEEEEeCCCceeEeeecccce-----------------------------------------
Confidence 99999999998885 67999999999999999876541
Q ss_pred EEeeeecccccceeeeeeccceeEEEeecccceecccccccccccchhhhhhcccccEEEEEecC--CeeEeeeCCCeEE
Q psy18231 324 VFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEARDSITSVHVSD--HEILTASLDCRIR 401 (540)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~--~~l~~~~~dg~i~ 401 (540)
....+.+|...+..+.+++ ..+++++.|+.++
T Consensus 222 ----------------------------------------------~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~ 255 (420)
T 4gga_A 222 ----------------------------------------------HVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVN 255 (420)
T ss_dssp ----------------------------------------------EEEEEECCSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred ----------------------------------------------eeEEecccccceeeeeecCCCCeeeeeeccccce
Confidence 1114567889999999998 8899999999999
Q ss_pred EEeCCCCce----EEeee--CCceEEEEEecCCc-EEEe--ecCCCeEEEEeccccchhhhhccCcCCcceEEEEecCCC
Q psy18231 402 RYDIRTGNL----VTDYV--GEPIVDACFTRDCQ-CILT--CSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKD 472 (540)
Q Consensus 402 iwd~~~~~~----~~~~~--~~~i~~~~~sp~~~-~l~~--~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~s~~~ 472 (540)
+||..+++. +.... ...|.+++|+|++. ++++ |+.|++|++||+.+++.+..+..|.. +..+ .|++++
T Consensus 256 i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~~~~-v~~~--~~~~~~ 332 (420)
T 4gga_A 256 VWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQ-VCSI--LWSPHY 332 (420)
T ss_dssp EEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEECSSC-EEEE--EEETTT
T ss_pred EEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeeccccc-eeee--eecCCC
Confidence 999987753 22222 36799999999654 4444 56799999999999999888876654 4444 799999
Q ss_pred CeEEEee--CCCcEEEEEecCCcceeEEEecccceeeeEEEEcCCCcEEEeec-CCeeEEEEcccc
Q psy18231 473 SQIFCGS--SDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC-GNNVKLWTAEED 535 (540)
Q Consensus 473 ~~l~s~s--~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~-d~~i~iw~~~~~ 535 (540)
+.+++++ .|+.|+|||+.+++++.++. +|.+.|++++|+|||++|+||+ |++|+|||+.+.
T Consensus 333 ~~lv~~sg~~d~~I~iwd~~~~~~v~~l~--gH~~~V~~l~~spdg~~l~S~s~D~tvriWdv~~~ 396 (420)
T 4gga_A 333 KELISGHGFAQNQLVIWKYPTMAKVAELK--GHTSRVLSLTMSPDGATVASAAADETLRLWRCFEL 396 (420)
T ss_dssp TEEEEEECTTTCCEEEEETTTCCEEEEEC--CCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCS
T ss_pred CeEEEEEecCCCEEEEEECCCCcEEEEEc--CCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCC
Confidence 9988765 79999999999999999998 9999999999999999999999 999999998653
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-38 Score=308.17 Aligned_cols=299 Identities=22% Similarity=0.252 Sum_probs=244.9
Q ss_pred cceeeeecccccc---eeeeeecCeEEEEeCC-CCCEEEEeeCCCcEEEEcCCCCeeEEEee-------------cCCcc
Q psy18231 146 EWSIRVYRPLTVN---RELFVLSGLMHTRFPV-DGSYCLTCGSDKKIKLWNPYRNLLLKTYG-------------GHAHE 208 (540)
Q Consensus 146 ~~~i~~~~~~~~~---~~~~h~~~v~~v~~sp-dg~~lat~~~dg~i~iwd~~~~~~~~~~~-------------~h~~~ 208 (540)
+..+++|+..... ....|.+.|++++|+| ++++|++|+.||.|++||+.+++....+. +|...
T Consensus 22 ~~~~~v~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (408)
T 4a11_B 22 ESTRRVLGLELNKDRDVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYS 101 (408)
T ss_dssp HHHHHHHTEEECTTEEECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSC
T ss_pred cCcceeeccccCcceeeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCc
Confidence 4456667655432 2345999999999999 99999999999999999998876554443 59999
Q ss_pred eeEEEEee-CCCeEEEeeCCCeEEEEEcCCCceeEeccccCCceeEEEECCC---CCEEEEecCCCcEEEEEecCCCCCC
Q psy18231 209 VNDATAAC-DSSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNED---SSVVISGSQDNTVMMWDVKSRSHHP 284 (540)
Q Consensus 209 v~~l~~sp-~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~---~~~l~s~~~dg~i~iwd~~~~~~~~ 284 (540)
|.+++|+| ++.+|++++.||.|++||+.+++....+. +...+.++.|++. +.++++++.||.|++||+++++.
T Consensus 102 v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~-- 178 (408)
T 4a11_B 102 VETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFN-FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSC-- 178 (408)
T ss_dssp EEEEEECTTCTTCEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCC--
T ss_pred EEEEEEccCCCcEEEEEeCCCeEEEeeCCCCccceecc-CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcce--
Confidence 99999999 78899999999999999999998887775 7889999999984 45999999999999999987652
Q ss_pred cchhhhhHhhhhcCCceeEEEEeecccccccccCceeeEEEeeeecccccceeeeeeccceeEEEeecccceeccccccc
Q psy18231 285 IQVRCLNEALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPI 364 (540)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (540)
T Consensus 179 -------------------------------------------------------------------------------- 178 (408)
T 4a11_B 179 -------------------------------------------------------------------------------- 178 (408)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccchhhhhhcccccEEEEEecC--C-eeEeeeCCCeEEEEeCCCCc-eEEee-----------------eCCceEEEE
Q psy18231 365 SIHNSCFQALKEARDSITSVHVSD--H-EILTASLDCRIRRYDIRTGN-LVTDY-----------------VGEPIVDAC 423 (540)
Q Consensus 365 ~~~~~~~~~~~~~~~~v~~l~~~~--~-~l~~~~~dg~i~iwd~~~~~-~~~~~-----------------~~~~i~~~~ 423 (540)
...+..|...|.+++|+| . ++++++.||.|++||++++. .+..+ +...|.+++
T Consensus 179 ------~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 252 (408)
T 4a11_B 179 ------SHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLC 252 (408)
T ss_dssp ------CEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEE
T ss_pred ------eeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEE
Confidence 114557889999999999 3 58899999999999998765 23322 235799999
Q ss_pred EecCCcEEEeecCCCeEEEEeccccchhhhhccCcCC----cceEEEEecCCCCeEEEeeCCCcEEEEEecCCcceeEEE
Q psy18231 424 FTRDCQCILTCSTDECLRLFDKATGELLEEYKGHKSG----DFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLI 499 (540)
Q Consensus 424 ~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~----v~~~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~ 499 (540)
|+|++++|++++.||.|++||+.+++....+..+... ..... .....+..+++++.|+.|++||+.+++++..+.
T Consensus 253 ~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~ 331 (408)
T 4a11_B 253 FTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFT-VSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLK 331 (408)
T ss_dssp ECTTSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCE-ECCSSSSCEEEEEETTEEEEEETTTCCEEEEEC
T ss_pred EcCCCCEEEEecCCCeEEEEECCCCccceeccccccccccccceeE-EecCCCceEEEEecCCEEEEEECcCCcceeeec
Confidence 9999999999999999999999998776555433211 11111 223445567788889999999999999999998
Q ss_pred ecccceeeeEEEEcCCCcEEEeec-CCeeEEEEccccc
Q psy18231 500 HSVGKAVVNSLCSHPTRKHIMSAC-GNNVKLWTAEEDY 536 (540)
Q Consensus 500 ~~~~~~~v~~l~~s~d~~~l~s~~-d~~i~iw~~~~~~ 536 (540)
+|...|++++|+|++++|++++ ||.|++|+++++.
T Consensus 332 --~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~ 367 (408)
T 4a11_B 332 --GHYKTVDCCVFQSNFQELYSGSRDCNILAWVPSLYE 367 (408)
T ss_dssp --CCSSCEEEEEEETTTTEEEEEETTSCEEEEEECC--
T ss_pred --cCCCeEEEEEEcCCCCEEEEECCCCeEEEEeCCCCC
Confidence 8999999999999999999999 9999999998753
|
| >4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-38 Score=295.52 Aligned_cols=273 Identities=16% Similarity=0.257 Sum_probs=229.9
Q ss_pred eEEEEeCCCCCEEEEeeCCCcEEEEcCCCCeeEEEee--cCCcceeEEEEeeCCCeEEEeeCCCeEEEEEcCCCceeEec
Q psy18231 167 LMHTRFPVDGSYCLTCGSDKKIKLWNPYRNLLLKTYG--GHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPVRRW 244 (540)
Q Consensus 167 v~~v~~spdg~~lat~~~dg~i~iwd~~~~~~~~~~~--~h~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~ 244 (540)
.++|+||+++ +||+|. |++|+|||+.+++.+..+. +|...|++++|+|++++|++|+.||+|++||+++++.+..+
T Consensus 28 ~~~l~WS~~~-~lAvg~-D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~ 105 (318)
T 4ggc_A 28 LNLVDWSSGN-VLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNM 105 (318)
T ss_dssp CBCEEECTTS-EEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE
T ss_pred ceEEEECCCC-EEEEEe-CCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEe
Confidence 4679999986 777765 9999999999999888765 67788999999999999999999999999999999999999
Q ss_pred cccCCceeEEEECCCCCEEEEecCCCcEEEEEecCCCCCCcchhhhhHhhhhcCCceeEEEEeecccccccccCceeeEE
Q psy18231 245 REHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHLSNGLLTKLV 324 (540)
Q Consensus 245 ~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (540)
.+|...+.++.+. +..+++++.++.+++|+......
T Consensus 106 ~~h~~~~~~~~~~--~~~l~s~~~~~~~~~~~~~~~~~------------------------------------------ 141 (318)
T 4ggc_A 106 TSHSARVGSLSWN--SYILSSGSRSGHIHHHDVRVAEH------------------------------------------ 141 (318)
T ss_dssp ECCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSSC------------------------------------------
T ss_pred cCccceEEEeecC--CCEEEEEecCCceEeeecCCCce------------------------------------------
Confidence 9999998877664 67999999999999999876542
Q ss_pred EeeeecccccceeeeeeccceeEEEeecccceecccccccccccchhhhhhcccccEEEEEecC--CeeEeeeCCCeEEE
Q psy18231 325 FAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEARDSITSVHVSD--HEILTASLDCRIRR 402 (540)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~--~~l~~~~~dg~i~i 402 (540)
....+.+|...+..+.+++ ..+++++.|+.|++
T Consensus 142 ---------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i 176 (318)
T 4ggc_A 142 ---------------------------------------------HVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNV 176 (318)
T ss_dssp ---------------------------------------------EEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred ---------------------------------------------eEEEEcCccCceEEEEEcCCCCEEEEEecCcceeE
Confidence 1114557888899999988 88999999999999
Q ss_pred EeCCCCceEEe----e--eCCceEEEEEecCCcE---EEeecCCCeEEEEeccccchhhhhccCcCCcceEEEEecCCCC
Q psy18231 403 YDIRTGNLVTD----Y--VGEPIVDACFTRDCQC---ILTCSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDS 473 (540)
Q Consensus 403 wd~~~~~~~~~----~--~~~~i~~~~~sp~~~~---l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~s~~~~ 473 (540)
||+++++.... . ....|.+++++|++.. +++++.++.|++||........... +...+..+ +|+++++
T Consensus 177 wd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~-~~~~v~~~--~~~~~~~ 253 (318)
T 4ggc_A 177 WPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVD-AHSQVCSI--LWSPHYK 253 (318)
T ss_dssp EESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEE-CSSCEEEE--EEETTTT
T ss_pred EECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEeccccccccccc-ceeeeeee--eeccccc
Confidence 99998764321 1 2367999999997653 3467789999999998877665544 44555555 7889999
Q ss_pred eEEEee--CCCcEEEEEecCCcceeEEEecccceeeeEEEEcCCCcEEEeec-CCeeEEEEcccc
Q psy18231 474 QIFCGS--SDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC-GNNVKLWTAEED 535 (540)
Q Consensus 474 ~l~s~s--~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~-d~~i~iw~~~~~ 535 (540)
.+++++ .|+.|++||+.+++++.++. +|.+.|++++|+||+++|+|++ |++|+|||+.+.
T Consensus 254 ~~~~~sg~~d~~i~iwd~~~~~~~~~l~--gH~~~V~~l~~spdg~~l~S~s~D~~v~iWd~~~~ 316 (318)
T 4ggc_A 254 ELISGHGFAQNQLVIWKYPTMAKVAELK--GHTSRVLSLTMSPDGATVASAAADETLRLWRCFEL 316 (318)
T ss_dssp EEEEEECTTTCCEEEEETTTCCEEEEEC--CCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCC
T ss_pred ceEEEEEcCCCEEEEEECCCCcEEEEEc--CCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCC
Confidence 877654 89999999999999999998 9999999999999999999999 999999999653
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-38 Score=303.07 Aligned_cols=279 Identities=15% Similarity=0.191 Sum_probs=237.4
Q ss_pred eeeeecCeEEEEeCCC---CCEEEEeeCCCcEEEEcCCC-CeeE-EEeecCCcceeEEEEeeCCCeEEEeeCCCeEEEEE
Q psy18231 160 ELFVLSGLMHTRFPVD---GSYCLTCGSDKKIKLWNPYR-NLLL-KTYGGHAHEVNDATAACDSSQIASGASDKSVILWE 234 (540)
Q Consensus 160 ~~~h~~~v~~v~~spd---g~~lat~~~dg~i~iwd~~~-~~~~-~~~~~h~~~v~~l~~sp~~~~l~s~s~dg~i~iwd 234 (540)
...|.+.|++++|+|+ |++|++|+.||.|++||+.+ +..+ ..+.+|...|++++|+|++++|++++.||.|++||
T Consensus 35 ~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd 114 (368)
T 3mmy_A 35 TSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWD 114 (368)
T ss_dssp SSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred ccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEcCCCcEEEEE
Confidence 3479999999999999 69999999999999999987 5554 77889999999999999999999999999999999
Q ss_pred cCCCceeEeccccCCceeEEEE--CCCCCEEEEecCCCcEEEEEecCCCCCCcchhhhhHhhhhcCCceeEEEEeecccc
Q psy18231 235 VTTGQPVRRWREHASKVTCVKF--NEDSSVVISGSQDNTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTK 312 (540)
Q Consensus 235 ~~~~~~~~~~~~h~~~v~~~~~--~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (540)
+++++.+. +..|...|.+++| +|++++|++++.||.|++||+++++. ..
T Consensus 115 ~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~--~~-------------------------- 165 (368)
T 3mmy_A 115 LSSNQAIQ-IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNP--MM-------------------------- 165 (368)
T ss_dssp TTTTEEEE-EEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSC--SE--------------------------
T ss_pred cCCCCcee-eccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcE--EE--------------------------
Confidence 99988776 5579999999999 89999999999999999999987752 11
Q ss_pred cccccCceeeEEEeeeecccccceeeeeeccceeEEEeecccceecccccccccccchhhhhhcccccEEEEEecCCeeE
Q psy18231 313 NHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEARDSITSVHVSDHEIL 392 (540)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~ 392 (540)
.+. ....+.++.+.+..++
T Consensus 166 ------------------------------------------------------------~~~-~~~~~~~~~~~~~~~~ 184 (368)
T 3mmy_A 166 ------------------------------------------------------------VLQ-LPERCYCADVIYPMAV 184 (368)
T ss_dssp ------------------------------------------------------------EEE-CSSCEEEEEEETTEEE
T ss_pred ------------------------------------------------------------EEe-cCCCceEEEecCCeeE
Confidence 111 1235677777788899
Q ss_pred eeeCCCeEEEEeCCCCceEEeee----CCceEEEEEecCCcE----EEeecCCCeEEEEecccc---chhhhhccCcC--
Q psy18231 393 TASLDCRIRRYDIRTGNLVTDYV----GEPIVDACFTRDCQC----ILTCSTDECLRLFDKATG---ELLEEYKGHKS-- 459 (540)
Q Consensus 393 ~~~~dg~i~iwd~~~~~~~~~~~----~~~i~~~~~sp~~~~----l~~~~~dg~i~i~d~~~~---~~~~~~~~~~~-- 459 (540)
+++.++.+++|+++......... .+.+.++++.++... +++++.||.|++||+... +.+..+..|..
T Consensus 185 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~ 264 (368)
T 3mmy_A 185 VATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNG 264 (368)
T ss_dssp EEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC-
T ss_pred EEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeeeeeccc
Confidence 99999999999999775543332 356778888776655 999999999999999887 55667777765
Q ss_pred ----------CcceEEEEecCCCCeEEEeeCCCcEEEEEecCCcceeEEEecccceeeeEEEEcCCCcEEEeec-CCeeE
Q psy18231 460 ----------GDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC-GNNVK 528 (540)
Q Consensus 460 ----------~v~~~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~-d~~i~ 528 (540)
.+..+ +|+|++++|++++.||.|++||+.+++++..+. .|...|++++|+|++++|++++ |+..+
T Consensus 265 ~~~~~~~~~~~v~~~--~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~--~~~~~v~~~~~s~~g~~l~~~s~d~~~~ 340 (368)
T 3mmy_A 265 TNTSAPQDIYAVNGI--AFHPVHGTLATVGSDGRFSFWDKDARTKLKTSE--QLDQPISACCFNHNGNIFAYASSYDWSK 340 (368)
T ss_dssp ---CCCEEECCEEEE--EECTTTCCEEEEETTSCEEEEETTTTEEEEECC--CCSSCEEEEEECTTSSCEEEEECCCSTT
T ss_pred ccccccccccceEEE--EEecCCCEEEEEccCCeEEEEECCCCcEEEEec--CCCCCceEEEECCCCCeEEEEecccccc
Confidence 57666 899999999999999999999999999999888 8999999999999999999998 87555
Q ss_pred EEEc
Q psy18231 529 LWTA 532 (540)
Q Consensus 529 iw~~ 532 (540)
.|++
T Consensus 341 ~~~~ 344 (368)
T 3mmy_A 341 GHEF 344 (368)
T ss_dssp CGGG
T ss_pred cccc
Confidence 5443
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-38 Score=295.96 Aligned_cols=244 Identities=15% Similarity=0.216 Sum_probs=198.3
Q ss_pred eeeeecCeEEEEeCCCCCEEEEeeCCCcEEEEcCCCCe--eEEEeecCCcceeEEEEee--CCCeEEEeeCCCeEEEEEc
Q psy18231 160 ELFVLSGLMHTRFPVDGSYCLTCGSDKKIKLWNPYRNL--LLKTYGGHAHEVNDATAAC--DSSQIASGASDKSVILWEV 235 (540)
Q Consensus 160 ~~~h~~~v~~v~~spdg~~lat~~~dg~i~iwd~~~~~--~~~~~~~h~~~v~~l~~sp--~~~~l~s~s~dg~i~iwd~ 235 (540)
..+|.+.|++++|+|+|++||+|+.|++|+|||+.++. .+..+.+|.+.|++++|+| ++++|++++.|++|++||+
T Consensus 9 ~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~ 88 (316)
T 3bg1_A 9 DTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWRE 88 (316)
T ss_dssp -----CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEECC
T ss_pred cccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEEC
Confidence 34799999999999999999999999999999998774 5678899999999999986 4899999999999999999
Q ss_pred CCCc--eeEeccccCCceeEEEECCC--CCEEEEecCCCcEEEEEecCCCCCCcchhhhhHhhhhcCCceeEEEEeeccc
Q psy18231 236 TTGQ--PVRRWREHASKVTCVKFNED--SSVVISGSQDNTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKST 311 (540)
Q Consensus 236 ~~~~--~~~~~~~h~~~v~~~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (540)
++++ ....+.+|...|.+++|+|+ +.+|++++.||+|++||++.......
T Consensus 89 ~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~-------------------------- 142 (316)
T 3bg1_A 89 ENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEV-------------------------- 142 (316)
T ss_dssp SSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEE--------------------------
T ss_pred CCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcce--------------------------
Confidence 8874 56678899999999999997 78999999999999999986531000
Q ss_pred ccccccCceeeEEEeeeecccccceeeeeeccceeEEEeecccceecccccccccccchhhhhhcccccEEEEEecC---
Q psy18231 312 KNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEARDSITSVHVSD--- 388 (540)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~--- 388 (540)
...+.+|...|.+++|+|
T Consensus 143 -----------------------------------------------------------~~~~~~h~~~v~~~~~~~~~~ 163 (316)
T 3bg1_A 143 -----------------------------------------------------------KKINNAHTIGCNAVSWAPAVV 163 (316)
T ss_dssp -----------------------------------------------------------CCBTTSSSSCBCCCEECCCCC
T ss_pred -----------------------------------------------------------eeeeccccCCcceEEEccccC
Confidence 002233444455555544
Q ss_pred ----------------CeeEeeeCCCeEEEEeCCCC---ceEEeeeC--CceEEEEEecCC----cEEEeecCCCeEEEE
Q psy18231 389 ----------------HEILTASLDCRIRRYDIRTG---NLVTDYVG--EPIVDACFTRDC----QCILTCSTDECLRLF 443 (540)
Q Consensus 389 ----------------~~l~~~~~dg~i~iwd~~~~---~~~~~~~~--~~i~~~~~sp~~----~~l~~~~~dg~i~i~ 443 (540)
.+|++++.|+.|++||++.. +.+..+.+ ..|.+++|+|++ ++|++++.|++|++|
T Consensus 164 ~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw 243 (316)
T 3bg1_A 164 PGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIW 243 (316)
T ss_dssp C------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEE
T ss_pred CccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEE
Confidence 47999999999999999765 35555654 579999999987 889999999999999
Q ss_pred eccccc----hhhhhccCcCCcceEEEEecCCCCeEEEeeCCCcEEEEEec
Q psy18231 444 DKATGE----LLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLV 490 (540)
Q Consensus 444 d~~~~~----~~~~~~~~~~~v~~~~~~~s~~~~~l~s~s~dg~i~iwd~~ 490 (540)
|+.+.. ....+..|...++.+ +|+|++++|++++.|++|++|+..
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~v~~v--~~sp~g~~las~~~D~~v~lw~~~ 292 (316)
T 3bg1_A 244 TCDDASSNTWSPKLLHKFNDVVWHV--SWSITANILAVSGGDNKVTLWKES 292 (316)
T ss_dssp ECSSTTCCCCBCCEEEECSSCEEEE--EECTTTCCEEEEESSSCEEEEEEC
T ss_pred EccCccccchhhhhhhcCCCcEEEE--EEcCCCCEEEEEcCCCeEEEEEEC
Confidence 987631 223456788888877 899999999999999999999975
|
| >4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-37 Score=301.65 Aligned_cols=280 Identities=15% Similarity=0.233 Sum_probs=231.0
Q ss_pred ccccceeeeeccccccee-----eeeecCeEEEEeCCCCCEEEEeeCCCcEEEEcCCCCeeEEEeecCCcceeEEEEeeC
Q psy18231 143 LPKEWSIRVYRPLTVNRE-----LFVLSGLMHTRFPVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACD 217 (540)
Q Consensus 143 ~~~~~~i~~~~~~~~~~~-----~~h~~~v~~v~~spdg~~lat~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~ 217 (540)
.+.+.+|++|+..+.... ..|.+.|++|+|+|||++||+|+.||+|+|||+.+++.+..+.+|...+.++++ +
T Consensus 121 vgld~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~~~~h~~~v~~~s~--~ 198 (420)
T 4gga_A 121 VALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSW--N 198 (420)
T ss_dssp EEETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEE--E
T ss_pred EEeCCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEEEeCCCCceEEEee--C
Confidence 345889999999876532 246778999999999999999999999999999999999999999999998877 4
Q ss_pred CCeEEEeeCCCeEEEEEcCCC-ceeEeccccCCceeEEEECCCCCEEEEecCCCcEEEEEecCCCCCCcchhhhhHhhhh
Q psy18231 218 SSQIASGASDKSVILWEVTTG-QPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQVRCLNEALKE 296 (540)
Q Consensus 218 ~~~l~s~s~dg~i~iwd~~~~-~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 296 (540)
+.+|++|+.|+.+++||.... ..+..+.+|...+..+.|+|+++++++++.||.+++|+..+++....
T Consensus 199 ~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~----------- 267 (420)
T 4gga_A 199 SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWV----------- 267 (420)
T ss_dssp TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSC-----------
T ss_pred CCEEEEEeCCCceeEeeecccceeeEEecccccceeeeeecCCCCeeeeeeccccceEEeeccccccce-----------
Confidence 789999999999999999864 45677889999999999999999999999999999999987652111
Q ss_pred cCCceeEEEEeecccccccccCceeeEEEeeeecccccceeeeeeccceeEEEeecccceecccccccccccchhhhhhc
Q psy18231 297 ARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKE 376 (540)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (540)
.+.....
T Consensus 268 -------------------------------------------------------------------------~~~~~~~ 274 (420)
T 4gga_A 268 -------------------------------------------------------------------------PLQTFTQ 274 (420)
T ss_dssp -------------------------------------------------------------------------CSEEECC
T ss_pred -------------------------------------------------------------------------eeeeecc
Confidence 1114456
Q ss_pred ccccEEEEEecC---CeeEe--eeCCCeEEEEeCCCCceEEeeeC-CceEEEEEecCCcEEEeec--CCCeEEEEecccc
Q psy18231 377 ARDSITSVHVSD---HEILT--ASLDCRIRRYDIRTGNLVTDYVG-EPIVDACFTRDCQCILTCS--TDECLRLFDKATG 448 (540)
Q Consensus 377 ~~~~v~~l~~~~---~~l~~--~~~dg~i~iwd~~~~~~~~~~~~-~~i~~~~~sp~~~~l~~~~--~dg~i~i~d~~~~ 448 (540)
|...|.+++|+| ..+++ |+.|++|++||+.++++...+.. ..+.++.|+|+++.+++++ .|+.|+|||+.++
T Consensus 275 ~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~ 354 (420)
T 4gga_A 275 HQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTM 354 (420)
T ss_dssp CSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTC
T ss_pred cCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeeccccceeeeeecCCCCeEEEEEecCCCEEEEEECCCC
Confidence 788999999998 55554 45799999999999999888875 6899999999999888764 7999999999999
Q ss_pred chhhhhccCcCCcceEEEEecCCCCeEEEeeCCCcEEEEEecCCcceeEEEecccceeeeEEEE
Q psy18231 449 ELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCS 512 (540)
Q Consensus 449 ~~~~~~~~~~~~v~~~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~ 512 (540)
+++.++.+|...|+++ +|+|||++|++|+.|++|++||+.+..+....+ .+...+....|
T Consensus 355 ~~v~~l~gH~~~V~~l--~~spdg~~l~S~s~D~tvriWdv~~~~~~~~~~--~~~~~~~~~s~ 414 (420)
T 4gga_A 355 AKVAELKGHTSRVLSL--TMSPDGATVASAAADETLRLWRCFELDPARRRE--REKASAAKSSL 414 (420)
T ss_dssp CEEEEECCCSSCEEEE--EECTTSSCEEEEETTTEEEEECCSCSSCC-----------------
T ss_pred cEEEEEcCCCCCEEEE--EEcCCCCEEEEEecCCeEEEEECCCCCccchhh--hccCCcccccc
Confidence 9999999999999888 899999999999999999999998877766665 44444443333
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-37 Score=304.94 Aligned_cols=276 Identities=21% Similarity=0.404 Sum_probs=243.5
Q ss_pred eeeeeecCeEEEEeCCCCCEEEEeeCCCcEEEEcCCCCeeEEEeecCCcceeEEEEeeCCCeEEEeeCCCeEEEEEcCCC
Q psy18231 159 RELFVLSGLMHTRFPVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTG 238 (540)
Q Consensus 159 ~~~~h~~~v~~v~~spdg~~lat~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~ 238 (540)
...+|.+.|.. +++++|++|++|+.||+|++||+.+++.+..+.+|.+.|++++|+ +++|++++.||+|++||+.++
T Consensus 113 ~l~~h~~~v~~-~~~~~g~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~~~~ 189 (445)
T 2ovr_B 113 VLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMR--DNIIISGSTDRTLKVWNAETG 189 (445)
T ss_dssp EEECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTT
T ss_pred EecccCCCcEE-EEEEcCCEEEEEECCCcEEEEECCCCcEEEEEcCCCCCEEEEEec--CCEEEEEeCCCeEEEEECCcC
Confidence 34568887533 355578999999999999999999999999999999999999997 679999999999999999999
Q ss_pred ceeEeccccCCceeEEEECCCCCEEEEecCCCcEEEEEecCCCCCCcchhhhhHhhhhcCCceeEEEEeecccccccccC
Q psy18231 239 QPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHLSNG 318 (540)
Q Consensus 239 ~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (540)
+.+..+.+|...|.++.|+ ++.+++++.||+|++||+.+++.
T Consensus 190 ~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~~wd~~~~~~------------------------------------ 231 (445)
T 2ovr_B 190 ECIHTLYGHTSTVRCMHLH--EKRVVSGSRDATLRVWDIETGQC------------------------------------ 231 (445)
T ss_dssp EEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEESSSCCE------------------------------------
T ss_pred cEEEEECCCCCcEEEEEec--CCEEEEEeCCCEEEEEECCCCcE------------------------------------
Confidence 9999999999999999995 56899999999999999987651
Q ss_pred ceeeEEEeeeecccccceeeeeeccceeEEEeecccceecccccccccccchhhhhhcccccEEEEEecCCeeEeeeCCC
Q psy18231 319 LLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEARDSITSVHVSDHEILTASLDC 398 (540)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~dg 398 (540)
...+.+|...|.+++++++.+++++.||
T Consensus 232 ----------------------------------------------------~~~~~~~~~~v~~~~~~~~~l~~~~~dg 259 (445)
T 2ovr_B 232 ----------------------------------------------------LHVLMGHVAAVRCVQYDGRRVVSGAYDF 259 (445)
T ss_dssp ----------------------------------------------------EEEEECCSSCEEEEEECSSCEEEEETTS
T ss_pred ----------------------------------------------------EEEEcCCcccEEEEEECCCEEEEEcCCC
Confidence 1144578889999999889999999999
Q ss_pred eEEEEeCCCCceEEeeeC--CceEEEEEecCCcEEEeecCCCeEEEEeccccchhhhhccCcCCcceEEEEecCCCCeEE
Q psy18231 399 RIRRYDIRTGNLVTDYVG--EPIVDACFTRDCQCILTCSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIF 476 (540)
Q Consensus 399 ~i~iwd~~~~~~~~~~~~--~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~s~~~~~l~ 476 (540)
.|++||+++++.+..+.+ ..|.+++| +++++++++.|+.|++||+++++.+..+.+|...+..+ .+ ++++|+
T Consensus 260 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~--~~--~~~~l~ 333 (445)
T 2ovr_B 260 MVKVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGM--EL--KDNILV 333 (445)
T ss_dssp CEEEEEGGGTEEEEEECCCSSCEEEEEE--CSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEE--EE--ETTEEE
T ss_pred EEEEEECCCCcEeEEecCCCCceEEEEE--CCCEEEEEeCCCeEEEEECCCCCEEEEEcCCcccEEEE--EE--eCCEEE
Confidence 999999999999888875 57888888 88999999999999999999999999999998877655 33 577999
Q ss_pred EeeCCCcEEEEEecCCcceeEEEe-cccceeeeEEEEcCCCcEEEeec-CCeeEEEEcccc
Q psy18231 477 CGSSDGKIYKWQLVDSSQISTLIH-SVGKAVVNSLCSHPTRKHIMSAC-GNNVKLWTAEED 535 (540)
Q Consensus 477 s~s~dg~i~iwd~~~~~~~~~~~~-~~~~~~v~~l~~s~d~~~l~s~~-d~~i~iw~~~~~ 535 (540)
+|+.||.|++||+.+++.+..+.. ..|...|.+++|+ +++|++++ ||.|++||+.++
T Consensus 334 ~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~~~~ 392 (445)
T 2ovr_B 334 SGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTG 392 (445)
T ss_dssp EEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTC
T ss_pred EEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEEC--CCEEEEEeCCCeEEEEECCCC
Confidence 999999999999999999988872 1288899999996 57999999 999999999865
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-37 Score=306.23 Aligned_cols=296 Identities=19% Similarity=0.281 Sum_probs=249.1
Q ss_pred hhhhcccccceeeeecccccce---eeeeecCeEEEEeCCCCCEEEEeeCCCcEEEEcCCCCeeEEEeecCCcceeEEEE
Q psy18231 138 RILYELPKEWSIRVYRPLTVNR---ELFVLSGLMHTRFPVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATA 214 (540)
Q Consensus 138 ~~~~~~~~~~~i~~~~~~~~~~---~~~h~~~v~~v~~spdg~~lat~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~ 214 (540)
..+++++.+++|++|+..+... ..+|.+.|.+++|+|++ +|++|+.||+|++||+.+++.+..+.+|...|.+++|
T Consensus 133 ~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~ 211 (464)
T 3v7d_B 133 NYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDI 211 (464)
T ss_dssp TEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSTT-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEE
T ss_pred CEEEEEcCCCcEEEEECCCCcEEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEEECCCCcEEEEECCCCCccEEEEE
Confidence 4677889999999999877653 34599999999999998 8999999999999999999999999999999999999
Q ss_pred ee--CCCeEEEeeCCCeEEEEEcCCCce-----------------------eEeccccCCceeEEEECCCCCEEEEecCC
Q psy18231 215 AC--DSSQIASGASDKSVILWEVTTGQP-----------------------VRRWREHASKVTCVKFNEDSSVVISGSQD 269 (540)
Q Consensus 215 sp--~~~~l~s~s~dg~i~iwd~~~~~~-----------------------~~~~~~h~~~v~~~~~~~~~~~l~s~~~d 269 (540)
++ ++++|++++.|++|++||+.+++. +..+.+|...|.++ +++++++++++.|
T Consensus 212 ~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~l~~~~~d 289 (464)
T 3v7d_B 212 VEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTV--SGHGNIVVSGSYD 289 (464)
T ss_dssp EESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEE--EEETTEEEEEETT
T ss_pred ecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEE--cCCCCEEEEEeCC
Confidence 95 778999999999999999987653 44567888888887 4578899999999
Q ss_pred CcEEEEEecCCCCCCcchhhhhHhhhhcCCceeEEEEeecccccccccCceeeEEEeeeecccccceeeeeeccceeEEE
Q psy18231 270 NTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVL 349 (540)
Q Consensus 270 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (540)
|.|++||+++++.
T Consensus 290 ~~i~vwd~~~~~~------------------------------------------------------------------- 302 (464)
T 3v7d_B 290 NTLIVWDVAQMKC------------------------------------------------------------------- 302 (464)
T ss_dssp SCEEEEETTTTEE-------------------------------------------------------------------
T ss_pred CeEEEEECCCCcE-------------------------------------------------------------------
Confidence 9999999987641
Q ss_pred eecccceecccccccccccchhhhhhcccccEEEEEecC--CeeEeeeCCCeEEEEeCCCCceEEeeeC--CceEEEEEe
Q psy18231 350 LDFLGSTQIGDVTPISIHNSCFQALKEARDSITSVHVSD--HEILTASLDCRIRRYDIRTGNLVTDYVG--EPIVDACFT 425 (540)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~--~~i~~~~~s 425 (540)
+..+.+|...|.+++|+| +.+++++.||.|++||+++++.+..+.+ ..|.+++|+
T Consensus 303 ---------------------~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~ 361 (464)
T 3v7d_B 303 ---------------------LYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLS 361 (464)
T ss_dssp ---------------------EEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEC
T ss_pred ---------------------EEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCcEEEEEEc
Confidence 114557889999999998 7899999999999999999999988875 578888886
Q ss_pred cCCcEEEeecCCCeEEEEeccccchhhhhccCcCCcceEEEEecCCCCeEEEeeCCCcEEEEEecCCcceeEEEecccce
Q psy18231 426 RDCQCILTCSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKA 505 (540)
Q Consensus 426 p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~ 505 (540)
+++|++++.||.|++||+.+++....+. |...+..+ ++++++++|++|+ ||.|++||+.+++.+..... .|..
T Consensus 362 --~~~l~s~s~dg~v~vwd~~~~~~~~~~~-~~~~~~~~--~~~~~~~~l~~~~-dg~i~iwd~~~g~~~~~~~~-~~~~ 434 (464)
T 3v7d_B 362 --DKFLVSAAADGSIRGWDANDYSRKFSYH-HTNLSAIT--TFYVSDNILVSGS-ENQFNIYNLRSGKLVHANIL-KDAD 434 (464)
T ss_dssp --SSEEEEEETTSEEEEEETTTCCEEEEEE-CTTCCCEE--EEEECSSEEEEEE-TTEEEEEETTTCCEEESCTT-TTCS
T ss_pred --CCEEEEEeCCCcEEEEECCCCceeeeec-CCCCccEE--EEEeCCCEEEEec-CCeEEEEECCCCcEEehhhc-cCCC
Confidence 5899999999999999999877554443 44455555 7899999999998 89999999999998876332 7889
Q ss_pred eeeEEEEcCCCcEEEeec-CCeeEEEEc
Q psy18231 506 VVNSLCSHPTRKHIMSAC-GNNVKLWTA 532 (540)
Q Consensus 506 ~v~~l~~s~d~~~l~s~~-d~~i~iw~~ 532 (540)
.|.+++|+ +..++++++ |+.+.+|-+
T Consensus 435 ~v~~v~~~-~~~l~~~~~~~g~~~i~~l 461 (464)
T 3v7d_B 435 QIWSVNFK-GKTLVAAVEKDGQSFLEIL 461 (464)
T ss_dssp EEEEEEEE-TTEEEEEEEETTEEEEEEE
T ss_pred cEEEEEec-CCEEEEEEEeCCeEEEEEe
Confidence 99999997 344555555 776665543
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-37 Score=298.44 Aligned_cols=302 Identities=15% Similarity=0.205 Sum_probs=233.0
Q ss_pred cceeccc-cchhhhhhcccccceeeeecccccce---eee-----eecCeEEEEeCCC----CCEEEEeeCCCcEEEEcC
Q psy18231 127 PLLFSLP-RTITRILYELPKEWSIRVYRPLTVNR---ELF-----VLSGLMHTRFPVD----GSYCLTCGSDKKIKLWNP 193 (540)
Q Consensus 127 ~~~~s~~-~~~~~~~~~~~~~~~i~~~~~~~~~~---~~~-----h~~~v~~v~~spd----g~~lat~~~dg~i~iwd~ 193 (540)
.+.|++. ......++....++.|++|+..+... ... |.+.|.+++|+|+ +++|++|+.||.|++||+
T Consensus 23 ~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~ 102 (366)
T 3k26_A 23 GVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINP 102 (366)
T ss_dssp EEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECT
T ss_pred EEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEc
Confidence 3445543 12233344445556899999886442 222 4477999999999 779999999999999999
Q ss_pred CCCeeEEEeecCCcceeEEEEee-CCCeEEEeeCCCeEEEEEcCCCceeEec---cccCCceeEEEECCCCCEEEEecCC
Q psy18231 194 YRNLLLKTYGGHAHEVNDATAAC-DSSQIASGASDKSVILWEVTTGQPVRRW---REHASKVTCVKFNEDSSVVISGSQD 269 (540)
Q Consensus 194 ~~~~~~~~~~~h~~~v~~l~~sp-~~~~l~s~s~dg~i~iwd~~~~~~~~~~---~~h~~~v~~~~~~~~~~~l~s~~~d 269 (540)
.+++.+..+.+|...|.+++|+| ++++|++++.||.|++||+++++.+..+ ..|...|.+++|+|++++|++++.|
T Consensus 103 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 182 (366)
T 3k26_A 103 ITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMD 182 (366)
T ss_dssp TTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEECTTSSEEEEEETT
T ss_pred hhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEEEECCCCCEEEEecCC
Confidence 99999999999999999999999 9999999999999999999999988887 7899999999999999999999999
Q ss_pred CcEEEEEecCCCCCCcchhhhhHhhhhcCCceeEEEEeecccccccccCceeeEEEeeeecccccceeeeeeccceeEEE
Q psy18231 270 NTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVL 349 (540)
Q Consensus 270 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (540)
|.|++||+++++.... ..... ...+........
T Consensus 183 g~i~i~d~~~~~~~~~----~~~~~-------------~~~~~~~~~~~~------------------------------ 215 (366)
T 3k26_A 183 HSLKLWRINSKRMMNA----IKESY-------------DYNPNKTNRPFI------------------------------ 215 (366)
T ss_dssp SCEEEEESCSHHHHHH----HHHHH-------------TCCGGGCSSCCC------------------------------
T ss_pred CCEEEEECCCCccccc----cceeE-------------EecCCCCccccc------------------------------
Confidence 9999999987542110 00000 000000000000
Q ss_pred eecccceecccccccccccchhhhhhcccccEEEEEecCCeeEeeeCCCeEEEEeCCCCce--------------EEeee
Q psy18231 350 LDFLGSTQIGDVTPISIHNSCFQALKEARDSITSVHVSDHEILTASLDCRIRRYDIRTGNL--------------VTDYV 415 (540)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~dg~i~iwd~~~~~~--------------~~~~~ 415 (540)
..............|...|.+++|+++++++++.|+.|++||+.+++. +..+.
T Consensus 216 -------------~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (366)
T 3k26_A 216 -------------SQKIHFPDFSTRDIHRNYVDCVRWLGDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFD 282 (366)
T ss_dssp -------------CEEECCCSEEECSSCSSCCCEEEEETTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEE
T ss_pred -------------ceeeccCccccccCCcceEEEEEEcCCEEEEEecCCEEEEEeCCCccccccccccCCcchheecccc
Confidence 000000011134458899999999999999999999999999987644 44444
Q ss_pred C--CceEEEEEecC--CcEEEeecCCCeEEEEeccccchhh----hhccC--cCCcceEEEEecCCCCeEEEeeCCCcEE
Q psy18231 416 G--EPIVDACFTRD--CQCILTCSTDECLRLFDKATGELLE----EYKGH--KSGDFRIECCLDSKDSQIFCGSSDGKIY 485 (540)
Q Consensus 416 ~--~~i~~~~~sp~--~~~l~~~~~dg~i~i~d~~~~~~~~----~~~~~--~~~v~~~~~~~s~~~~~l~s~s~dg~i~ 485 (540)
. ..|.+++|+|+ +++|++++.||.|++||+.+++... .+..| ...|..+ +|+|++++|++++.||.|+
T Consensus 283 ~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~--~~s~~~~~l~s~~~dg~i~ 360 (366)
T 3k26_A 283 YSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQT--SFSRDSSILIAVCDDASIW 360 (366)
T ss_dssp CSSCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSSGGGCEEEEECCTTCCSCEEEE--EECTTSSEEEEEETTSEEE
T ss_pred ccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCCccccceEEcccccCCceEEE--EeCCCCCeEEEEeCCCEEE
Confidence 3 57999999999 9999999999999999999987655 67777 6777777 8999999999999999999
Q ss_pred EEEec
Q psy18231 486 KWQLV 490 (540)
Q Consensus 486 iwd~~ 490 (540)
+||+.
T Consensus 361 iwd~~ 365 (366)
T 3k26_A 361 RWDRL 365 (366)
T ss_dssp EEEC-
T ss_pred EEEec
Confidence 99975
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-37 Score=299.53 Aligned_cols=268 Identities=16% Similarity=0.254 Sum_probs=228.4
Q ss_pred hhcccccceeeeeccccccee----eeeecCeEEEEeCCCCCEEEEeeCCCcEEEEcCCCCeeEEEeecCCcceeEEEEe
Q psy18231 140 LYELPKEWSIRVYRPLTVNRE----LFVLSGLMHTRFPVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAA 215 (540)
Q Consensus 140 ~~~~~~~~~i~~~~~~~~~~~----~~h~~~v~~v~~spdg~~lat~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s 215 (540)
+..++.++.|++|+..+.... ..|.+.|.+++|+|++++|++|+.||.|++||+.+++.+..+.+|...|.+++|
T Consensus 106 l~~~~~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~- 184 (401)
T 4aez_A 106 VVAVALERNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSW- 184 (401)
T ss_dssp EEEEEETTEEEEEETTTCCEEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEE-
T ss_pred EEEEECCCeEEEeeCCCCcEeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCeEEEEecCCCCceEEEEE-
Confidence 456678899999998876532 226789999999999999999999999999999999999999999999999999
Q ss_pred eCCCeEEEeeCCCeEEEEEcC-CCceeEeccccCCceeEEEECCCCCEEEEecCCCcEEEEEecCCCCCCcchhhhhHhh
Q psy18231 216 CDSSQIASGASDKSVILWEVT-TGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQVRCLNEAL 294 (540)
Q Consensus 216 p~~~~l~s~s~dg~i~iwd~~-~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 294 (540)
++++|++++.||.|++||++ .+..+..+.+|.+.|.+++|+|++++|++++.||.|++||+++.+.
T Consensus 185 -~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~------------ 251 (401)
T 4aez_A 185 -NRHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIP------------ 251 (401)
T ss_dssp -ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCSSE------------
T ss_pred -CCCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCc------------
Confidence 46799999999999999998 5667788889999999999999999999999999999999987541
Q ss_pred hhcCCceeEEEEeecccccccccCceeeEEEeeeecccccceeeeeeccceeEEEeecccceecccccccccccchhhhh
Q psy18231 295 KEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQAL 374 (540)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (540)
...+
T Consensus 252 ----------------------------------------------------------------------------~~~~ 255 (401)
T 4aez_A 252 ----------------------------------------------------------------------------KFTK 255 (401)
T ss_dssp ----------------------------------------------------------------------------EEEE
T ss_pred ----------------------------------------------------------------------------cEEe
Confidence 1134
Q ss_pred hcccccEEEEEecC---CeeEeee--CCCeEEEEeCCCCceEEeeeC-CceEEEEEecCCcEEEe--ecCCCeEEEEecc
Q psy18231 375 KEARDSITSVHVSD---HEILTAS--LDCRIRRYDIRTGNLVTDYVG-EPIVDACFTRDCQCILT--CSTDECLRLFDKA 446 (540)
Q Consensus 375 ~~~~~~v~~l~~~~---~~l~~~~--~dg~i~iwd~~~~~~~~~~~~-~~i~~~~~sp~~~~l~~--~~~dg~i~i~d~~ 446 (540)
..|...|.+++|+| .++++++ .|+.|++||+++++.+..+.. ..+.+++|+|+++++++ |+.||.|++||+.
T Consensus 256 ~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~ 335 (401)
T 4aez_A 256 TNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVDAGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYS 335 (401)
T ss_dssp CCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEECSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEE
T ss_pred cCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEEECCCCCeEEEEeecCCCcEEEEecC
Confidence 56788999999998 5566654 799999999999999888864 68999999999999999 5589999999999
Q ss_pred ccchh--hhhccCcCCcceEEEEecCCCCeEEEeeCCCcEEEEEecCCcceeEEE
Q psy18231 447 TGELL--EEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLI 499 (540)
Q Consensus 447 ~~~~~--~~~~~~~~~v~~~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~ 499 (540)
+++.. ..+.+|...+..+ +|+|++++|++++.||.|++||+.+++.+....
T Consensus 336 ~~~~~~~~~~~~h~~~v~~~--~~s~dg~~l~s~~~dg~i~iw~~~~~~~~~~~~ 388 (401)
T 4aez_A 336 SSGLTKQVDIPAHDTRVLYS--ALSPDGRILSTAASDENLKFWRVYDGDHVKRPI 388 (401)
T ss_dssp TTEEEEEEEEECCSSCCCEE--EECTTSSEEEEECTTSEEEEEECCC--------
T ss_pred CccceeEEEecCCCCCEEEE--EECCCCCEEEEEeCCCcEEEEECCCCccccccc
Confidence 86544 4467899999888 899999999999999999999999988776654
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-37 Score=294.42 Aligned_cols=298 Identities=17% Similarity=0.134 Sum_probs=221.0
Q ss_pred eeeeeecCeEEEEeCCCCCEEEEeeCCCcEEEEcCCCC----eeEEEeecCCcceeEEEEee--CCCeEEEeeCCCeEEE
Q psy18231 159 RELFVLSGLMHTRFPVDGSYCLTCGSDKKIKLWNPYRN----LLLKTYGGHAHEVNDATAAC--DSSQIASGASDKSVIL 232 (540)
Q Consensus 159 ~~~~h~~~v~~v~~spdg~~lat~~~dg~i~iwd~~~~----~~~~~~~~h~~~v~~l~~sp--~~~~l~s~s~dg~i~i 232 (540)
...+|.+.|++++|+|++++||+|+.||.|++||+.++ +....+.+|...|++++|+| ++++|++++.||+|++
T Consensus 6 ~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~v 85 (351)
T 3f3f_A 6 FDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKL 85 (351)
T ss_dssp EECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEE
T ss_pred cCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEE
Confidence 34579999999999999999999999999999999876 56778889999999999999 6999999999999999
Q ss_pred EEcCCC---------ceeEeccccCCceeEEEECCC--CCEEEEecCCCcEEEEEecCCCCCCcchhhhhHhhhhcCCce
Q psy18231 233 WEVTTG---------QPVRRWREHASKVTCVKFNED--SSVVISGSQDNTVMMWDVKSRSHHPIQVRCLNEALKEARDSI 301 (540)
Q Consensus 233 wd~~~~---------~~~~~~~~h~~~v~~~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (540)
||++++ +.+..+..|...|.+++|+|+ +++|++++.||.|++||+++.+...... ..
T Consensus 86 wd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~--~~---------- 153 (351)
T 3f3f_A 86 WEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWT--LT---------- 153 (351)
T ss_dssp EEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCE--EE----------
T ss_pred EecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhcccc--cc----------
Confidence 999887 457778899999999999999 9999999999999999998876311110 00
Q ss_pred eEEEEeecccccccccCceeeEEEeeeecccccceeeeeeccceeEEEeecccceecccccccccccchhhhhhcccccE
Q psy18231 302 TSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEARDSI 381 (540)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 381 (540)
... .........|...+
T Consensus 154 ~~~---------------------------------------------------------------~~~~~~~~~~~~~~ 170 (351)
T 3f3f_A 154 SEM---------------------------------------------------------------KVLSIPPANHLQSD 170 (351)
T ss_dssp EEE---------------------------------------------------------------ESCSCCCSSCSCCC
T ss_pred ccc---------------------------------------------------------------cccccccCCcccce
Confidence 000 00000223567788
Q ss_pred EEEEecC-----CeeEeeeCCCeEEEEeCCCCce--EEeeeC--CceEEEEEecCC----cEEEeecCCCeEEEEecccc
Q psy18231 382 TSVHVSD-----HEILTASLDCRIRRYDIRTGNL--VTDYVG--EPIVDACFTRDC----QCILTCSTDECLRLFDKATG 448 (540)
Q Consensus 382 ~~l~~~~-----~~l~~~~~dg~i~iwd~~~~~~--~~~~~~--~~i~~~~~sp~~----~~l~~~~~dg~i~i~d~~~~ 448 (540)
.+++|+| ..+++++.|+.+.+|+...++. +..+.+ ..|.+++|+|++ ++|++++.||.|++||++++
T Consensus 171 ~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~ 250 (351)
T 3f3f_A 171 FCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEK 250 (351)
T ss_dssp EEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEEC
T ss_pred eEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCC
Confidence 9999975 6899999999998888887765 445543 589999999998 89999999999999999887
Q ss_pred chhhhhccCcCCcceEEEEecCCCCeEEEe----eCCCcEEEEEecCCcceeEEEecccceeeeEEEEcCCCcEEEeec-
Q psy18231 449 ELLEEYKGHKSGDFRIECCLDSKDSQIFCG----SSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC- 523 (540)
Q Consensus 449 ~~~~~~~~~~~~v~~~~~~~s~~~~~l~s~----s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~- 523 (540)
........+....... ..++....++.+ .....+.+|+..+.+.+..+. +|...|++++|+|++++|++++
T Consensus 251 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~h~~~v~~~~~s~~~~~l~s~~~ 326 (351)
T 3f3f_A 251 LSPLASEESLTNSNMF--DNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHD--DHNGEVWSVSWNLTGTILSSAGD 326 (351)
T ss_dssp C-----------------------------------------CCSEEEEEEEEEC--TTSSCEEEEEECSSSCCEEEEET
T ss_pred cCccccCCcccceecc--CCCcccccccccccccccceeeeecccccccEEEEEe--cccccEEEEEEcCCCCEEEEecC
Confidence 6554443333322222 333444344433 344556677766777777777 8999999999999999999999
Q ss_pred CCeeEEEEcccc
Q psy18231 524 GNNVKLWTAEED 535 (540)
Q Consensus 524 d~~i~iw~~~~~ 535 (540)
||.|++|+++.+
T Consensus 327 dg~v~iw~~~~~ 338 (351)
T 3f3f_A 327 DGKVRLWKATYS 338 (351)
T ss_dssp TSCEEEEEECTT
T ss_pred CCcEEEEecCcC
Confidence 999999999864
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-37 Score=322.55 Aligned_cols=271 Identities=19% Similarity=0.328 Sum_probs=228.0
Q ss_pred ccccchhhhhhcccccceeeeeccccc--------ceeeeeecCeEEEEeCCCCCEEEEeeCCCcEEEEcCCCCeeEEEe
Q psy18231 131 SLPRTITRILYELPKEWSIRVYRPLTV--------NRELFVLSGLMHTRFPVDGSYCLTCGSDKKIKLWNPYRNLLLKTY 202 (540)
Q Consensus 131 s~~~~~~~~~~~~~~~~~i~~~~~~~~--------~~~~~h~~~v~~v~~spdg~~lat~~~dg~i~iwd~~~~~~~~~~ 202 (540)
..+.....++++++.|++|++|+.... ....+|...|.+++|+|++++|++|+.||+|+|||+.+++.+..+
T Consensus 389 ~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~~~~~~~~ 468 (694)
T 3dm0_A 389 ATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRF 468 (694)
T ss_dssp ECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE
T ss_pred EecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcceeEE
Confidence 333333567788999999999987642 234579999999999999999999999999999999999999999
Q ss_pred ecCCcceeEEEEeeCCCeEEEeeCCCeEEEEEcCCCceeEe---ccccCCceeEEEECCCC--CEEEEecCCCcEEEEEe
Q psy18231 203 GGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPVRR---WREHASKVTCVKFNEDS--SVVISGSQDNTVMMWDV 277 (540)
Q Consensus 203 ~~h~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~---~~~h~~~v~~~~~~~~~--~~l~s~~~dg~i~iwd~ 277 (540)
.+|...|.+++|+|++++|++++.|++|++||+........ ..+|...|.+++|+|++ ..|++++.||+|++||+
T Consensus 469 ~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~ 548 (694)
T 3dm0_A 469 VGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNL 548 (694)
T ss_dssp ECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEET
T ss_pred eCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEEC
Confidence 99999999999999999999999999999999865543332 24789999999999986 58999999999999999
Q ss_pred cCCCCCCcchhhhhHhhhhcCCceeEEEEeecccccccccCceeeEEEeeeecccccceeeeeeccceeEEEeeccccee
Q psy18231 278 KSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQ 357 (540)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (540)
++.+.
T Consensus 549 ~~~~~--------------------------------------------------------------------------- 553 (694)
T 3dm0_A 549 SNCKL--------------------------------------------------------------------------- 553 (694)
T ss_dssp TTCCE---------------------------------------------------------------------------
T ss_pred CCCcE---------------------------------------------------------------------------
Confidence 87651
Q ss_pred cccccccccccchhhhhhcccccEEEEEecC--CeeEeeeCCCeEEEEeCCCCceEEeeeC-CceEEEEEecCCcEEEee
Q psy18231 358 IGDVTPISIHNSCFQALKEARDSITSVHVSD--HEILTASLDCRIRRYDIRTGNLVTDYVG-EPIVDACFTRDCQCILTC 434 (540)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~i~~~~~sp~~~~l~~~ 434 (540)
...+.+|...|.+++|+| +++++++.||.|++||+++++.+..+.. ..+.+++|+|++.+|+++
T Consensus 554 -------------~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~ 620 (694)
T 3dm0_A 554 -------------RSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEANSVIHALCFSPNRYWLCAA 620 (694)
T ss_dssp -------------EEEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEECCBCSSCEEEEEECSSSSEEEEE
T ss_pred -------------EEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEecCCCcEEEEEEcCCCcEEEEE
Confidence 114567899999999998 8899999999999999999998887765 579999999999888776
Q ss_pred cCCCeEEEEeccccchhhhhccCc-----------------CCcceEEEEecCCCCeEEEeeCCCcEEEEEec
Q psy18231 435 STDECLRLFDKATGELLEEYKGHK-----------------SGDFRIECCLDSKDSQIFCGSSDGKIYKWQLV 490 (540)
Q Consensus 435 ~~dg~i~i~d~~~~~~~~~~~~~~-----------------~~v~~~~~~~s~~~~~l~s~s~dg~i~iwd~~ 490 (540)
+ ++.|++||+++++.+..+..+. ..+.+..++|+|+|++|++|+.||+|++|++.
T Consensus 621 ~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg~i~iW~i~ 692 (694)
T 3dm0_A 621 T-EHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVWGIG 692 (694)
T ss_dssp E-TTEEEEEETTTTEEEEEECCCCC----------------CCCCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred c-CCCEEEEECCCCCChhhhccccccccccccccccccCCceeEEeeeEEEcCCCCEEEEEcCCCeEEEEecc
Confidence 5 5669999999988766554321 11234455899999999999999999999975
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-38 Score=296.29 Aligned_cols=243 Identities=18% Similarity=0.205 Sum_probs=200.9
Q ss_pred EeecCCcceeEEEEeeCCCeEEEeeCCCeEEEEEcCCCc--eeEeccccCCceeEEEECC--CCCEEEEecCCCcEEEEE
Q psy18231 201 TYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQ--PVRRWREHASKVTCVKFNE--DSSVVISGSQDNTVMMWD 276 (540)
Q Consensus 201 ~~~~h~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~--~~~~~~~h~~~v~~~~~~~--~~~~l~s~~~dg~i~iwd 276 (540)
.+.+|.+.|++++|+|++++||+|+.|++|+|||+.+++ .+..+.+|.+.|.+++|++ ++++|++++.|++|++||
T Consensus 8 ~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd 87 (316)
T 3bg1_A 8 VDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWR 87 (316)
T ss_dssp ------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEEC
T ss_pred ecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEE
Confidence 456899999999999999999999999999999998875 4677889999999999986 489999999999999999
Q ss_pred ecCCCCCCcchhhhhHhhhhcCCceeEEEEeecccccccccCceeeEEEeeeecccccceeeeeeccceeEEEeecccce
Q psy18231 277 VKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGST 356 (540)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (540)
+++++...
T Consensus 88 ~~~~~~~~------------------------------------------------------------------------ 95 (316)
T 3bg1_A 88 EENGTWEK------------------------------------------------------------------------ 95 (316)
T ss_dssp CSSSCCCE------------------------------------------------------------------------
T ss_pred CCCCcceE------------------------------------------------------------------------
Confidence 98654111
Q ss_pred ecccccccccccchhhhhhcccccEEEEEecC----CeeEeeeCCCeEEEEeCCCCceE---Eeee--CCceEEEEEecC
Q psy18231 357 QIGDVTPISIHNSCFQALKEARDSITSVHVSD----HEILTASLDCRIRRYDIRTGNLV---TDYV--GEPIVDACFTRD 427 (540)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~----~~l~~~~~dg~i~iwd~~~~~~~---~~~~--~~~i~~~~~sp~ 427 (540)
...+.+|...|.+++|+| .+|++++.|+.|++||++.+... ..+. ...+.+++|+|+
T Consensus 96 --------------~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~ 161 (316)
T 3bg1_A 96 --------------SHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPA 161 (316)
T ss_dssp --------------EEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCC
T ss_pred --------------EEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccc
Confidence 114457889999999998 37999999999999999876322 2222 257899999997
Q ss_pred -----------------CcEEEeecCCCeEEEEecccc---chhhhhccCcCCcceEEEEecCCC----CeEEEeeCCCc
Q psy18231 428 -----------------CQCILTCSTDECLRLFDKATG---ELLEEYKGHKSGDFRIECCLDSKD----SQIFCGSSDGK 483 (540)
Q Consensus 428 -----------------~~~l~~~~~dg~i~i~d~~~~---~~~~~~~~~~~~v~~~~~~~s~~~----~~l~s~s~dg~ 483 (540)
+++|++|+.|+.|++||++.. +.+..+.+|...|..+ +|+|++ ++|++++.|++
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v--~~sp~~~~~~~~las~s~D~~ 239 (316)
T 3bg1_A 162 VVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDV--AWAPSIGLPTSTIASCSQDGR 239 (316)
T ss_dssp CCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEE--ECCCCSSCSCCEEEEEETTCE
T ss_pred cCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEE--EecCCCCCCCceEEEEcCCCe
Confidence 478999999999999999754 4677889999999888 899986 78999999999
Q ss_pred EEEEEecCCc----ceeEEEecccceeeeEEEEcCCCcEEEeec-CCeeEEEEcc
Q psy18231 484 IYKWQLVDSS----QISTLIHSVGKAVVNSLCSHPTRKHIMSAC-GNNVKLWTAE 533 (540)
Q Consensus 484 i~iwd~~~~~----~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~-d~~i~iw~~~ 533 (540)
|++||+.+.. ....+. .|...|.+++|+|++++|++++ |++|++|+..
T Consensus 240 v~iw~~~~~~~~~~~~~~~~--~~~~~v~~v~~sp~g~~las~~~D~~v~lw~~~ 292 (316)
T 3bg1_A 240 VFIWTCDDASSNTWSPKLLH--KFNDVVWHVSWSITANILAVSGGDNKVTLWKES 292 (316)
T ss_dssp EEEEECSSTTCCCCBCCEEE--ECSSCEEEEEECTTTCCEEEEESSSCEEEEEEC
T ss_pred EEEEEccCccccchhhhhhh--cCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEEC
Confidence 9999987632 233444 6889999999999999999999 9999999976
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=9.1e-37 Score=324.56 Aligned_cols=316 Identities=17% Similarity=0.211 Sum_probs=262.2
Q ss_pred cceeccccchhhhhhcccccceeeeecccccc---eeeeeecCeEEEEeCCCCCEEEEeeCCCcEEEEcCCCCeeEEEee
Q psy18231 127 PLLFSLPRTITRILYELPKEWSIRVYRPLTVN---RELFVLSGLMHTRFPVDGSYCLTCGSDKKIKLWNPYRNLLLKTYG 203 (540)
Q Consensus 127 ~~~~s~~~~~~~~~~~~~~~~~i~~~~~~~~~---~~~~h~~~v~~v~~spdg~~lat~~~dg~i~iwd~~~~~~~~~~~ 203 (540)
.+.|+++ ...++.+..++.|++|+..+.. ....|.++|.+++|+|++++|++++.||.|++||+.+++.+..+.
T Consensus 18 ~i~~sp~---~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~ 94 (814)
T 3mkq_A 18 GIDFHPT---EPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFE 94 (814)
T ss_dssp EEEECSS---SSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred EEEECCC---CCEEEEEeCCCEEEEEECCCCceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEe
Confidence 3445554 3455566788999999987754 334599999999999999999999999999999999999999999
Q ss_pred cCCcceeEEEEeeCCCeEEEeeCCCeEEEEEcCCC-ceeEeccccCCceeEEEECC-CCCEEEEecCCCcEEEEEecCCC
Q psy18231 204 GHAHEVNDATAACDSSQIASGASDKSVILWEVTTG-QPVRRWREHASKVTCVKFNE-DSSVVISGSQDNTVMMWDVKSRS 281 (540)
Q Consensus 204 ~h~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~-~~~~~~~~h~~~v~~~~~~~-~~~~l~s~~~dg~i~iwd~~~~~ 281 (540)
+|.+.|++++|+|++++|++++.||+|++||+.++ .....+.+|...|.+++|+| +++.|++++.||+|++||+.++.
T Consensus 95 ~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~ 174 (814)
T 3mkq_A 95 AHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQST 174 (814)
T ss_dssp CCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSS
T ss_pred cCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCc
Confidence 99999999999999999999999999999999987 66777889999999999999 88999999999999999997655
Q ss_pred CCCcchhhhhHhhhhcCCceeEEEEeecccccccccCceeeEEEeeeecccccceeeeeeccceeEEEeecccceecccc
Q psy18231 282 HHPIQVRCLNEALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDV 361 (540)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (540)
....
T Consensus 175 ~~~~---------------------------------------------------------------------------- 178 (814)
T 3mkq_A 175 PNFT---------------------------------------------------------------------------- 178 (814)
T ss_dssp CSEE----------------------------------------------------------------------------
T ss_pred ceeE----------------------------------------------------------------------------
Confidence 2000
Q ss_pred cccccccchhhhhhcccccEEEEEecC----CeeEeeeCCCeEEEEeCCCCceEEeeeC--CceEEEEEecCCcEEEeec
Q psy18231 362 TPISIHNSCFQALKEARDSITSVHVSD----HEILTASLDCRIRRYDIRTGNLVTDYVG--EPIVDACFTRDCQCILTCS 435 (540)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~v~~l~~~~----~~l~~~~~dg~i~iwd~~~~~~~~~~~~--~~i~~~~~sp~~~~l~~~~ 435 (540)
....+...+.+++|+| ..+++++.||.|++||+++++.+..+.+ ..|.+++|+|+++++++++
T Consensus 179 -----------~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 247 (814)
T 3mkq_A 179 -----------LTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGS 247 (814)
T ss_dssp -----------EECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEE
T ss_pred -----------EecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEe
Confidence 1112346788888875 6899999999999999999998888875 5899999999999999999
Q ss_pred CCCeEEEEeccccchhhhhccCcCCcceEEEEecCCCCe-EEEeeCCCcEEEEEecCCcceeEEE---------------
Q psy18231 436 TDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQ-IFCGSSDGKIYKWQLVDSSQISTLI--------------- 499 (540)
Q Consensus 436 ~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~s~~~~~-l~s~s~dg~i~iwd~~~~~~~~~~~--------------- 499 (540)
.||.|++||+.+++.+..+..|...+..+ +|+|++.. +++++.|+.+.+|++........+.
T Consensus 248 ~dg~v~vwd~~~~~~~~~~~~~~~~v~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 325 (814)
T 3mkq_A 248 EDGTLKIWNSSTYKVEKTLNVGLERSWCI--ATHPTGRKNYIASGFDNGFTVLSLGNDEPTLSLDPVGKLVWSGGKNAAA 325 (814)
T ss_dssp TTSCEEEEETTTCSEEEEECCSSSSEEEE--EECTTCGGGEEEEEETTEEEEEECSCCSCCEEECSSSEEEEECCTTSCT
T ss_pred CCCeEEEEECCCCcEEEEeecCCCcEEEE--EEccCCCceEEEEEeCCCEEEEEcCCCCceeEECCCCCEEEECcccccc
Confidence 99999999999999999999998888887 89999874 2555557778899876543222111
Q ss_pred --------------------------ecccceeeeEEEEcCCCcEEEeecCCeeEEEEccc
Q psy18231 500 --------------------------HSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEE 534 (540)
Q Consensus 500 --------------------------~~~~~~~v~~l~~s~d~~~l~s~~d~~i~iw~~~~ 534 (540)
...+...+.+++|+|+|++|++++|+.+.+|++..
T Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~i~~~~~ 386 (814)
T 3mkq_A 326 SDIFTAVIRGNEEVEQDEPLSLQTKELGSVDVFPQSLAHSPNGRFVTVVGDGEYVIYTALA 386 (814)
T ss_dssp TCEEEEECCSCCCCCSSSCBCCCCEEECCCSSCCSEEEECTTSSEEEEEETTEEEEEETTT
T ss_pred eeeeeeecccccccccCccceeeeecCCCCccCCceeEECCCCCEEEEecCCEEEEEECcc
Confidence 01344467889999999999888888999998753
|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-36 Score=290.67 Aligned_cols=245 Identities=16% Similarity=0.208 Sum_probs=211.4
Q ss_pred eeeeeecCeEEEEeCCCCCEEEEeeCCCcEEEEcCC--CCeeEEEeecCCcceeEEEEeeC--CCeEEEeeCCCeEEEEE
Q psy18231 159 RELFVLSGLMHTRFPVDGSYCLTCGSDKKIKLWNPY--RNLLLKTYGGHAHEVNDATAACD--SSQIASGASDKSVILWE 234 (540)
Q Consensus 159 ~~~~h~~~v~~v~~spdg~~lat~~~dg~i~iwd~~--~~~~~~~~~~h~~~v~~l~~sp~--~~~l~s~s~dg~i~iwd 234 (540)
...+|.+.|++++|+|++++||+|+.||.|+|||+. +++.+..+.+|...|++++|+|+ +++|++++.||.|++||
T Consensus 6 ~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd 85 (379)
T 3jrp_A 6 IANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWK 85 (379)
T ss_dssp CEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEEEEE
T ss_pred EecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEEEEE
Confidence 345799999999999999999999999999999998 66778889999999999999987 99999999999999999
Q ss_pred cCCCc--eeEeccccCCceeEEEECCC--CCEEEEecCCCcEEEEEecCCCCCCcchhhhhHhhhhcCCceeEEEEeecc
Q psy18231 235 VTTGQ--PVRRWREHASKVTCVKFNED--SSVVISGSQDNTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKS 310 (540)
Q Consensus 235 ~~~~~--~~~~~~~h~~~v~~~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (540)
+.+++ .+..+..|...|.+++|+|+ +.+|++++.||.|++||+++.......
T Consensus 86 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~------------------------ 141 (379)
T 3jrp_A 86 EENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPI------------------------ 141 (379)
T ss_dssp EETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEE------------------------
T ss_pred cCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeE------------------------
Confidence 99987 67778889999999999999 999999999999999999876421111
Q ss_pred cccccccCceeeEEEeeeecccccceeeeeeccceeEEEeecccceecccccccccccchhhhhhcccccEEEEEecC--
Q psy18231 311 TKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEARDSITSVHVSD-- 388 (540)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~-- 388 (540)
.+..|...|.+++|+|
T Consensus 142 --------------------------------------------------------------~~~~~~~~v~~~~~~~~~ 159 (379)
T 3jrp_A 142 --------------------------------------------------------------IIDAHAIGVNSASWAPAT 159 (379)
T ss_dssp --------------------------------------------------------------EEECCTTCEEEEEECCCC
T ss_pred --------------------------------------------------------------EecCCCCceEEEEEcCcc
Confidence 3346778889999876
Q ss_pred -------------CeeEeeeCCCeEEEEeCCCCce----EEeee--CCceEEEEEecC---CcEEEeecCCCeEEEEecc
Q psy18231 389 -------------HEILTASLDCRIRRYDIRTGNL----VTDYV--GEPIVDACFTRD---CQCILTCSTDECLRLFDKA 446 (540)
Q Consensus 389 -------------~~l~~~~~dg~i~iwd~~~~~~----~~~~~--~~~i~~~~~sp~---~~~l~~~~~dg~i~i~d~~ 446 (540)
..+++++.||.|++||+++++. ...+. ...|.+++|+|+ +++|++++.||.|++||+.
T Consensus 160 ~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~ 239 (379)
T 3jrp_A 160 IEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQD 239 (379)
T ss_dssp ----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEES
T ss_pred ccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCC
Confidence 6799999999999999987653 33443 357999999999 9999999999999999998
Q ss_pred ccc-----hhhhhccCcCCcceEEEEecCCCCeEEEeeCCCcEEEEEecC
Q psy18231 447 TGE-----LLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVD 491 (540)
Q Consensus 447 ~~~-----~~~~~~~~~~~v~~~~~~~s~~~~~l~s~s~dg~i~iwd~~~ 491 (540)
+++ .+.....|...+..+ +|+|++++|++++.||.|++|++..
T Consensus 240 ~~~~~~~~~~~~~~~~~~~v~~~--~~s~~g~~l~~~~~dg~i~iw~~~~ 287 (379)
T 3jrp_A 240 NEQGPWKKTLLKEEKFPDVLWRA--SWSLSGNVLALSGGDNKVTLWKENL 287 (379)
T ss_dssp STTSCCEEEESSSSCCSSCEEEE--EECSSSCCEEEEESSSSEEEEEEEE
T ss_pred CCCccceeeeeccccCCCcEEEE--EEcCCCCEEEEecCCCcEEEEeCCC
Confidence 863 233344577777777 8999999999999999999999874
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.6e-37 Score=297.74 Aligned_cols=278 Identities=21% Similarity=0.291 Sum_probs=231.8
Q ss_pred eEEEEeCCCCCEEE-EeeCCCcEEEEcCCCCe----eEEEeecCCcceeEEEEee-CCCeEEEeeCCCeEEEEEcCCC--
Q psy18231 167 LMHTRFPVDGSYCL-TCGSDKKIKLWNPYRNL----LLKTYGGHAHEVNDATAAC-DSSQIASGASDKSVILWEVTTG-- 238 (540)
Q Consensus 167 v~~v~~spdg~~la-t~~~dg~i~iwd~~~~~----~~~~~~~h~~~v~~l~~sp-~~~~l~s~s~dg~i~iwd~~~~-- 238 (540)
...++++|+...++ +++.||.|+||++.+.. .+..+.+|.+.|++++|+| ++++|++|+.||+|++||+.++
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~ 116 (402)
T 2aq5_A 37 SGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGL 116 (402)
T ss_dssp SCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCC
T ss_pred CCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCC
Confidence 44578888875544 57889999999986542 3456788999999999999 9999999999999999999988
Q ss_pred -----ceeEeccccCCceeEEEECCCC-CEEEEecCCCcEEEEEecCCCCCCcchhhhhHhhhhcCCceeEEEEeecccc
Q psy18231 239 -----QPVRRWREHASKVTCVKFNEDS-SVVISGSQDNTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTK 312 (540)
Q Consensus 239 -----~~~~~~~~h~~~v~~~~~~~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (540)
+.+..+.+|...|.+++|+|++ ++|++++.||.|++||+++++.
T Consensus 117 ~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~------------------------------ 166 (402)
T 2aq5_A 117 VLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAA------------------------------ 166 (402)
T ss_dssp SSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEE------------------------------
T ss_pred ccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCc------------------------------
Confidence 6678888999999999999998 6999999999999999987641
Q ss_pred cccccCceeeEEEeeeecccccceeeeeeccceeEEEeecccceecccccccccccchhhhh--hcccccEEEEEecC--
Q psy18231 313 NHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQAL--KEARDSITSVHVSD-- 388 (540)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~v~~l~~~~-- 388 (540)
...+ ..|...|.+++|+|
T Consensus 167 ----------------------------------------------------------~~~~~~~~~~~~v~~~~~~~~~ 188 (402)
T 2aq5_A 167 ----------------------------------------------------------VLTLGPDVHPDTIYSVDWSRDG 188 (402)
T ss_dssp ----------------------------------------------------------EEEECTTTCCSCEEEEEECTTS
T ss_pred ----------------------------------------------------------cEEEecCCCCCceEEEEECCCC
Confidence 1133 56889999999998
Q ss_pred CeeEeeeCCCeEEEEeCCCCceEEee-eCC---ceEEEEEecCCcEEEee---cCCCeEEEEeccccch-hhhhc-cCcC
Q psy18231 389 HEILTASLDCRIRRYDIRTGNLVTDY-VGE---PIVDACFTRDCQCILTC---STDECLRLFDKATGEL-LEEYK-GHKS 459 (540)
Q Consensus 389 ~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~---~i~~~~~sp~~~~l~~~---~~dg~i~i~d~~~~~~-~~~~~-~~~~ 459 (540)
+.+++++.||.|++||+++++.+..+ ..+ .+.+++|+|++++|++| +.|+.|++||+++++. +.... .|..
T Consensus 189 ~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~ 268 (402)
T 2aq5_A 189 ALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSS 268 (402)
T ss_dssp SCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCS
T ss_pred CEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEeccCCC
Confidence 78999999999999999999998887 332 48999999999999999 7999999999998765 32332 3556
Q ss_pred CcceEEEEecCCCCeEE-EeeCCCcEEEEEecCCcc-eeEEEecccceeeeEEEEcCCCcEEEeecCCeeEEEEcccc
Q psy18231 460 GDFRIECCLDSKDSQIF-CGSSDGKIYKWQLVDSSQ-ISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEED 535 (540)
Q Consensus 460 ~v~~~~~~~s~~~~~l~-s~s~dg~i~iwd~~~~~~-~~~~~~~~~~~~v~~l~~s~d~~~l~s~~d~~i~iw~~~~~ 535 (540)
.+..+ +|+|++++|+ +|+.||.|++||+.+++. +..+....|...|.+++|+|++.+++++ |+.+++|++.++
T Consensus 269 ~v~~~--~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~sp~~~~~~s~-~~~~~~~~l~~~ 343 (402)
T 2aq5_A 269 GVLLP--FFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFSSKESQRGMGYMPKRGLEVNK-CEIARFYKLHER 343 (402)
T ss_dssp SCEEE--EEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEECCSSCCSEEEECCGGGSCGGG-TEEEEEEEEETT
T ss_pred ceeEE--EEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccccCCcccceEEecccccceec-ceeEEEEEcCCC
Confidence 66666 8999999986 556799999999999885 5666533466899999999999988753 679999998764
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a | Back alignment and structure |
|---|
Probab=100.00 E-value=9.9e-36 Score=282.71 Aligned_cols=266 Identities=18% Similarity=0.319 Sum_probs=227.3
Q ss_pred hhhhhcccccceeeeecccccc--------eeeeeecCeEEEEeCCCCCEEEEeeCCCcEEEEcCCCCeeEEEeecCCcc
Q psy18231 137 TRILYELPKEWSIRVYRPLTVN--------RELFVLSGLMHTRFPVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHE 208 (540)
Q Consensus 137 ~~~~~~~~~~~~i~~~~~~~~~--------~~~~h~~~v~~v~~spdg~~lat~~~dg~i~iwd~~~~~~~~~~~~h~~~ 208 (540)
..++++++.|++|++|+..... ...+|.+.|.+++|+|+|++|++++.|+.|++|+............+...
T Consensus 51 ~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~ 130 (340)
T 4aow_A 51 PDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKD 130 (340)
T ss_dssp TTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSC
T ss_pred CCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEcccccceEEeecccceeeeecCCCCc
Confidence 4677889999999999976532 23458999999999999999999999999999999999999989889999
Q ss_pred eeEEEEeeCCCeEEEeeCCCeEEEEEcCCCcee-EeccccCCceeEEEECCCC--CEEEEecCCCcEEEEEecCCCCCCc
Q psy18231 209 VNDATAACDSSQIASGASDKSVILWEVTTGQPV-RRWREHASKVTCVKFNEDS--SVVISGSQDNTVMMWDVKSRSHHPI 285 (540)
Q Consensus 209 v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~-~~~~~h~~~v~~~~~~~~~--~~l~s~~~dg~i~iwd~~~~~~~~~ 285 (540)
+..+.+++++++|++++.|+.+++||+...... ....+|...+..++|++++ .++++++.|+.|++||+++.+.
T Consensus 131 ~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~--- 207 (340)
T 4aow_A 131 VLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKL--- 207 (340)
T ss_dssp EEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEE---
T ss_pred eeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCce---
Confidence 999999999999999999999999999766443 4466899999999998864 5788999999999999987651
Q ss_pred chhhhhHhhhhcCCceeEEEEeecccccccccCceeeEEEeeeecccccceeeeeeccceeEEEeecccceecccccccc
Q psy18231 286 QVRCLNEALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPIS 365 (540)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 365 (540)
T Consensus 208 -------------------------------------------------------------------------------- 207 (340)
T 4aow_A 208 -------------------------------------------------------------------------------- 207 (340)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccchhhhhhcccccEEEEEecC--CeeEeeeCCCeEEEEeCCCCceEEeeeC-CceEEEEEecCCcEEEeecCCCeEEE
Q psy18231 366 IHNSCFQALKEARDSITSVHVSD--HEILTASLDCRIRRYDIRTGNLVTDYVG-EPIVDACFTRDCQCILTCSTDECLRL 442 (540)
Q Consensus 366 ~~~~~~~~~~~~~~~v~~l~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~i~~~~~sp~~~~l~~~~~dg~i~i 442 (540)
...+.+|...|.+++|+| ++|++++.||.|++||+++.+.+..+.. ..+.+++|+|++.++ +++.|+.|++
T Consensus 208 -----~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~d~~i~i 281 (340)
T 4aow_A 208 -----KTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINALCFSPNRYWL-CAATGPSIKI 281 (340)
T ss_dssp -----EEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECSSCEEEEEECSSSSEE-EEEETTEEEE
T ss_pred -----eeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeeecCCceEEeeecCCCCcee-eccCCCEEEE
Confidence 114567889999999998 7899999999999999999999888875 679999999987655 5567999999
Q ss_pred Eeccccchhhh---------hccCcCCcceEEEEecCCCCeEEEeeCCCcEEEEEecCCc
Q psy18231 443 FDKATGELLEE---------YKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSS 493 (540)
Q Consensus 443 ~d~~~~~~~~~---------~~~~~~~v~~~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~ 493 (540)
||++++..+.. ..+|...|+++ +|+|+|++|++|+.||.|+|||+.+|+
T Consensus 282 wd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l--~~s~dg~~l~sgs~Dg~v~iW~~~tGt 339 (340)
T 4aow_A 282 WDLEGKIIVDELKQEVISTSSKAEPPQCTSL--AWSADGQTLFAGYTDNLVRVWQVTIGT 339 (340)
T ss_dssp EETTTTEEEEEECCC-------CCCCCEEEE--EECTTSSEEEEEETTSCEEEEEEEC--
T ss_pred EECCCCeEEEeccccceeeeccCCCCCEEEE--EECCCCCEEEEEeCCCEEEEEeCCCcC
Confidence 99987765433 34677788777 899999999999999999999999886
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-36 Score=296.15 Aligned_cols=265 Identities=14% Similarity=0.171 Sum_probs=229.5
Q ss_pred hhhhcccccceeeeecccccc---------eeeeeecCeEEEEeCCC----C---CEEEEeeCCCcEEEEcCCCCee---
Q psy18231 138 RILYELPKEWSIRVYRPLTVN---------RELFVLSGLMHTRFPVD----G---SYCLTCGSDKKIKLWNPYRNLL--- 198 (540)
Q Consensus 138 ~~~~~~~~~~~i~~~~~~~~~---------~~~~h~~~v~~v~~spd----g---~~lat~~~dg~i~iwd~~~~~~--- 198 (540)
..++.++.++.|++|+..... ....|..+|.+++|+|+ + ++|++++.||.|++||+.+++.
T Consensus 27 ~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~ 106 (397)
T 1sq9_A 27 SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKK 106 (397)
T ss_dssp SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCC
T ss_pred CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEEEEEcCCCCEEEEEccCCccccc
Confidence 567788899999999987654 23458999999999999 9 9999999999999999998887
Q ss_pred --EEEeecC-----CcceeEEEEe----eCCCe-EEEeeCCCeEEEEEcCC------CceeE-----ec-------cccC
Q psy18231 199 --LKTYGGH-----AHEVNDATAA----CDSSQ-IASGASDKSVILWEVTT------GQPVR-----RW-------REHA 248 (540)
Q Consensus 199 --~~~~~~h-----~~~v~~l~~s----p~~~~-l~s~s~dg~i~iwd~~~------~~~~~-----~~-------~~h~ 248 (540)
+..+..| ...|.+++|+ |++++ |++++.||.|++||+.+ ++.+. .+ ..|.
T Consensus 107 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (397)
T 1sq9_A 107 VIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPS 186 (397)
T ss_dssp EEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSC
T ss_pred ccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCC
Confidence 8888888 5999999999 99999 99999999999999998 66665 66 4489
Q ss_pred CceeEEEECCCCCEEEEecCCCcEEEEEecCCCCCCcchhhhhHhhhhcCCceeEEEEeecccccccccCceeeEEEeee
Q psy18231 249 SKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFR 328 (540)
Q Consensus 249 ~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (540)
..|.+++|+|++ +|++++.||.|++||+++.+.
T Consensus 187 ~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~---------------------------------------------- 219 (397)
T 1sq9_A 187 QFATSVDISERG-LIATGFNNGTVQISELSTLRP---------------------------------------------- 219 (397)
T ss_dssp CCCCEEEECTTS-EEEEECTTSEEEEEETTTTEE----------------------------------------------
T ss_pred CCceEEEECCCc-eEEEEeCCCcEEEEECCCCce----------------------------------------------
Confidence 999999999999 999999999999999987541
Q ss_pred ecccccceeeeeeccceeEEEeecccceecccccccccccchhhhhhc---c---cccEEEEEecC--CeeEeeeCC---
Q psy18231 329 CKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKE---A---RDSITSVHVSD--HEILTASLD--- 397 (540)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~---~~~v~~l~~~~--~~l~~~~~d--- 397 (540)
+..+.. | ...|.+++|+| .++++++.|
T Consensus 220 ------------------------------------------~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~ 257 (397)
T 1sq9_A 220 ------------------------------------------LYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSF 257 (397)
T ss_dssp ------------------------------------------EEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTE
T ss_pred ------------------------------------------eEEEeccccccccCCccceEEECCCCCEEEEEecCCCC
Confidence 012233 6 78999999998 889999999
Q ss_pred CeEEEEeCCCCceEEeeeC---------------CceEEEEEecCCcEEEeecCCCeEEEEeccccchhhhhc------c
Q psy18231 398 CRIRRYDIRTGNLVTDYVG---------------EPIVDACFTRDCQCILTCSTDECLRLFDKATGELLEEYK------G 456 (540)
Q Consensus 398 g~i~iwd~~~~~~~~~~~~---------------~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~------~ 456 (540)
|.|++||+++++.+..+.. ..|.+++|+|++++|++++.||.|++||+.+++.+..+. +
T Consensus 258 g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 337 (397)
T 1sq9_A 258 GCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIE 337 (397)
T ss_dssp EEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCS
T ss_pred ceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCceeEEEecccCccc
Confidence 9999999999998887753 579999999999999999999999999999999998888 7
Q ss_pred C---------------cCCcceEEEEecCCC----------CeEEEeeCCCcEEEEEecCCc
Q psy18231 457 H---------------KSGDFRIECCLDSKD----------SQIFCGSSDGKIYKWQLVDSS 493 (540)
Q Consensus 457 ~---------------~~~v~~~~~~~s~~~----------~~l~s~s~dg~i~iwd~~~~~ 493 (540)
| ...|..+ +|+|++ ++|++++.||.|++||+.+++
T Consensus 338 ~~~~~~~g~~~~~~~~~~~v~~~--~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~g~ 397 (397)
T 1sq9_A 338 IEEDILAVDEHGDSLAEPGVFDV--KFLKKGWRSGMGADLNESLCCVCLDRSIRWFREAGGK 397 (397)
T ss_dssp SGGGCCCBCTTSCBCSSCCEEEE--EEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC--
T ss_pred chhhhhccccccccccCCceeEE--EeccccccccccccccceEEEecCCCcEEEEEcCCCC
Confidence 7 8888877 899998 799999999999999998764
|
| >2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.5e-37 Score=304.18 Aligned_cols=272 Identities=8% Similarity=0.022 Sum_probs=207.9
Q ss_pred eeeeecCeEEEEeCCCC---------CEEEEeeCCCcEEEEcCCCCeeEEEeecCCcceeEEEEeeCCCeEEEeeCCCeE
Q psy18231 160 ELFVLSGLMHTRFPVDG---------SYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSV 230 (540)
Q Consensus 160 ~~~h~~~v~~v~~spdg---------~~lat~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~dg~i 230 (540)
...+.+.|.+|+|+|++ ++||+|+.++.. -..+|+++.+++++.|++|
T Consensus 129 ~~~~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~-----------------------~~~~~~~~~laS~s~D~tI 185 (524)
T 2j04_B 129 IYNVGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMD-----------------------EPLNEHLEMFDKEKHSSCI 185 (524)
T ss_dssp EEECCC--CCCSCEEECCCCSSCSSEEEEEEEEEC-----------------------------------------CEEE
T ss_pred EEECCCceeEEEecccCCCCccCcCCeEEEEEEecccC-----------------------CccchhhhhhccCCCCceE
Confidence 34467899999999987 899999866420 0137899999999999999
Q ss_pred EEEEcCCCcee----EeccccCCceeEEEECCC------CCEEEEecCCCcEEEEEecCCCCCCcchhhhhHhhhhcCCc
Q psy18231 231 ILWEVTTGQPV----RRWREHASKVTCVKFNED------SSVVISGSQDNTVMMWDVKSRSHHPIQVRCLNEALKEARDS 300 (540)
Q Consensus 231 ~iwd~~~~~~~----~~~~~h~~~v~~~~~~~~------~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 300 (540)
+|||+.+++.. ..+..|.+.|.+++|+|+ +.+|++++.||+|++||+..+.......
T Consensus 186 ~iWd~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~------------- 252 (524)
T 2j04_B 186 QIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVF------------- 252 (524)
T ss_dssp EEEEEETTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEE-------------
T ss_pred EEEEccCCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccc-------------
Confidence 99999887643 345678899999999996 5799999999999999997664210000
Q ss_pred eeEEEEeecccccccccCceeeEEEeeeecccccceeeeeeccceeEEEeecccceecccccccccccchhhhhhccccc
Q psy18231 301 ITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEARDS 380 (540)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (540)
. ........+.+|...
T Consensus 253 ---~-------------------------------------------------------------~~~~p~~~l~~h~~~ 268 (524)
T 2j04_B 253 ---K-------------------------------------------------------------MCEKPSLTLSLADSL 268 (524)
T ss_dssp ---E-------------------------------------------------------------CCCSCSEEECCTTTC
T ss_pred ---e-------------------------------------------------------------eecCceEEEEcCCCC
Confidence 0 000011145678899
Q ss_pred EEEEEecC-CeeEeeeCCCeEEEEeCCCCc-eEEeee--CCceEEE--EEecCC-cEEEeecCCCeEEEEeccccchhhh
Q psy18231 381 ITSVHVSD-HEILTASLDCRIRRYDIRTGN-LVTDYV--GEPIVDA--CFTRDC-QCILTCSTDECLRLFDKATGELLEE 453 (540)
Q Consensus 381 v~~l~~~~-~~l~~~~~dg~i~iwd~~~~~-~~~~~~--~~~i~~~--~~sp~~-~~l~~~~~dg~i~i~d~~~~~~~~~ 453 (540)
|.+++|++ ..|++|+.||+|++||++++. +...+. ...|.++ +|+|++ ++|++++.|++|+|||+++++.+..
T Consensus 269 v~sv~~s~~~~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~ 348 (524)
T 2j04_B 269 ITTFDFLSPTTVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKT 348 (524)
T ss_dssp EEEEEESSSSEEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCE
T ss_pred EEEEEecCCCeEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCcccc
Confidence 99999988 889999999999999999764 333344 4689999 578888 8999999999999999999998888
Q ss_pred hccCcC--CcceEEEEecCCCCeEEEeeCCCcEEEEEecCCcceeEEEecccceeeeEEEEcCCCcEEEeec-CCeeEEE
Q psy18231 454 YKGHKS--GDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC-GNNVKLW 530 (540)
Q Consensus 454 ~~~~~~--~v~~~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~-d~~i~iw 530 (540)
+.+|.. .+..+ +|+|+++.+++++.|++|++||++++.++..+. +|.+.|++++|||+|++|++|+ |++|++|
T Consensus 349 ~~~~~~~~~v~~v--~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~--gH~~~V~sva~Sp~g~~l~Sgs~Dgtv~lw 424 (524)
T 2j04_B 349 TVSRFRGSNLVPV--VYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLV--SRETTITAIGVSRLHPMVLAGSADGSLIIT 424 (524)
T ss_dssp EEEECSCCSCCCE--EEETTTTEEEEECSSSEEEEEETTCTTCCEEEE--ECSSCEEEEECCSSCCBCEEEETTTEEECC
T ss_pred cccccccCcccce--EeCCCcCeEEEeCCCCcEEEEECcccccceeee--cCCCceEEEEeCCCCCeEEEEECCCEEEEE
Confidence 887764 35666 899999999999999999999999999888888 8999999999999999999999 9999999
Q ss_pred Ecccc
Q psy18231 531 TAEED 535 (540)
Q Consensus 531 ~~~~~ 535 (540)
++...
T Consensus 425 d~~~~ 429 (524)
T 2j04_B 425 NAARR 429 (524)
T ss_dssp BSCSS
T ss_pred echHh
Confidence 98654
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-36 Score=291.12 Aligned_cols=268 Identities=15% Similarity=0.226 Sum_probs=223.4
Q ss_pred hhhhhhcccc---cceeeeecccccce----eeeeecCeEEEEeCCC---CCEEEEeeCCCcEEEEcCCCCe-eEEEeec
Q psy18231 136 ITRILYELPK---EWSIRVYRPLTVNR----ELFVLSGLMHTRFPVD---GSYCLTCGSDKKIKLWNPYRNL-LLKTYGG 204 (540)
Q Consensus 136 ~~~~~~~~~~---~~~i~~~~~~~~~~----~~~h~~~v~~v~~spd---g~~lat~~~dg~i~iwd~~~~~-~~~~~~~ 204 (540)
...+++.++. ++.|++|+..+... ...|.+.|.+++|+|+ +++|++|+.||.|++||+.+++ .+..+.+
T Consensus 30 ~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 109 (357)
T 3i2n_A 30 SAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEMPVYSVKG 109 (357)
T ss_dssp SSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCSSCSEEECC
T ss_pred CceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCCccEEEEEe
Confidence 3445555555 89999999887542 3469999999999998 7999999999999999999988 8899999
Q ss_pred CCcceeEEEE------eeCCCeEEEeeCCCeEEEEEcCCCc-eeEeccccCC----ceeEEE----ECCCCCEEEEecCC
Q psy18231 205 HAHEVNDATA------ACDSSQIASGASDKSVILWEVTTGQ-PVRRWREHAS----KVTCVK----FNEDSSVVISGSQD 269 (540)
Q Consensus 205 h~~~v~~l~~------sp~~~~l~s~s~dg~i~iwd~~~~~-~~~~~~~h~~----~v~~~~----~~~~~~~l~s~~~d 269 (540)
|...|.++.| +|++++|++++.||.|++||+.+++ .+..+..|.+ .+.+++ |+|++++|++++.|
T Consensus 110 ~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d 189 (357)
T 3i2n_A 110 HKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDN 189 (357)
T ss_dssp CSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETT
T ss_pred cccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccC
Confidence 9999999955 6799999999999999999999987 6777766554 899998 78899999999999
Q ss_pred CcEEEEEecCCCCCCcchhhhhHhhhhcCCceeEEEEeecccccccccCceeeEEEeeeecccccceeeeeeccceeEEE
Q psy18231 270 NTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVL 349 (540)
Q Consensus 270 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (540)
|.|++||+++++.
T Consensus 190 ~~i~i~d~~~~~~------------------------------------------------------------------- 202 (357)
T 3i2n_A 190 GDIKLFDLRNMAL------------------------------------------------------------------- 202 (357)
T ss_dssp SEEEEEETTTTEE-------------------------------------------------------------------
T ss_pred CeEEEEECccCce-------------------------------------------------------------------
Confidence 9999999987641
Q ss_pred eecccceecccccccccccchhhhhhcccccEEEEEecC-----CeeEeeeCCCeEEEEeCCCCceEEee-------eCC
Q psy18231 350 LDFLGSTQIGDVTPISIHNSCFQALKEARDSITSVHVSD-----HEILTASLDCRIRRYDIRTGNLVTDY-------VGE 417 (540)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~-----~~l~~~~~dg~i~iwd~~~~~~~~~~-------~~~ 417 (540)
.....|...|.+++|+| +.+++++.||.|++||+++++....+ +..
T Consensus 203 ----------------------~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~ 260 (357)
T 3i2n_A 203 ----------------------RWETNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKS 260 (357)
T ss_dssp ----------------------EEEEECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEECCSS
T ss_pred ----------------------eeecCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccceeeeccCCCcC
Confidence 02235678899999985 78999999999999999987654433 236
Q ss_pred ceEEEEEecCCc-EEEeecCCCeEEEEecccc-------------------chhhhhccCcCCcceEEEEecCCCCeEE-
Q psy18231 418 PIVDACFTRDCQ-CILTCSTDECLRLFDKATG-------------------ELLEEYKGHKSGDFRIECCLDSKDSQIF- 476 (540)
Q Consensus 418 ~i~~~~~sp~~~-~l~~~~~dg~i~i~d~~~~-------------------~~~~~~~~~~~~v~~~~~~~s~~~~~l~- 476 (540)
.|.+++|+|+++ +|++++.||.|++||++++ +.+..+.+|...|..+ +|+|++++|+
T Consensus 261 ~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~--~~s~~~~~l~~ 338 (357)
T 3i2n_A 261 TVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSL--DWSPDKRGLCV 338 (357)
T ss_dssp CEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEE--EECSSSTTEEE
T ss_pred CEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccCCCCeeEE--EEcCCCCeEEE
Confidence 899999999998 8999999999999999754 3466778899888887 8999999998
Q ss_pred EeeCCCcEEEEEecCCcc
Q psy18231 477 CGSSDGKIYKWQLVDSSQ 494 (540)
Q Consensus 477 s~s~dg~i~iwd~~~~~~ 494 (540)
+++.||.|++||+.+.+.
T Consensus 339 s~~~d~~i~iw~~~~~~~ 356 (357)
T 3i2n_A 339 CSSFDQTVRVLIVTKLNK 356 (357)
T ss_dssp EEETTSEEEEEEECC---
T ss_pred EecCCCcEEEEECCCccc
Confidence 899999999999987654
|
| >4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.6e-35 Score=274.24 Aligned_cols=262 Identities=15% Similarity=0.252 Sum_probs=223.1
Q ss_pred cccceeeeeccccccee-----eeeecCeEEEEeCCCCCEEEEeeCCCcEEEEcCCCCeeEEEeecCCcceeEEEEeeCC
Q psy18231 144 PKEWSIRVYRPLTVNRE-----LFVLSGLMHTRFPVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDS 218 (540)
Q Consensus 144 ~~~~~i~~~~~~~~~~~-----~~h~~~v~~v~~spdg~~lat~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~ 218 (540)
+.|++|++|+..+.... ..|...|++++|+|++++||+|+.||+|++||+.+++.+..+.+|...+.++. +++
T Consensus 42 g~D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~~h~~~~~~~~--~~~ 119 (318)
T 4ggc_A 42 ALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLS--WNS 119 (318)
T ss_dssp EETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEE--EET
T ss_pred EeCCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEecCccceEEEee--cCC
Confidence 45889999998876532 24778899999999999999999999999999999999999999999887654 467
Q ss_pred CeEEEeeCCCeEEEEEcCCC-ceeEeccccCCceeEEEECCCCCEEEEecCCCcEEEEEecCCCCCCcchhhhhHhhhhc
Q psy18231 219 SQIASGASDKSVILWEVTTG-QPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQVRCLNEALKEA 297 (540)
Q Consensus 219 ~~l~s~s~dg~i~iwd~~~~-~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 297 (540)
..+++++.++.+++|+.... ..+..+.+|...+..+.+++++++|++++.||.|++||+++++.....
T Consensus 120 ~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~----------- 188 (318)
T 4ggc_A 120 YILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVP----------- 188 (318)
T ss_dssp TEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTTBSCC-----------
T ss_pred CEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCCCcccccc-----------
Confidence 89999999999999999876 455678899999999999999999999999999999999876531111
Q ss_pred CCceeEEEEeecccccccccCceeeEEEeeeecccccceeeeeeccceeEEEeecccceecccccccccccchhhhhhcc
Q psy18231 298 RDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEA 377 (540)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 377 (540)
......+
T Consensus 189 -------------------------------------------------------------------------~~~~~~~ 195 (318)
T 4ggc_A 189 -------------------------------------------------------------------------LQTFTQH 195 (318)
T ss_dssp -------------------------------------------------------------------------SEEECCC
T ss_pred -------------------------------------------------------------------------eeeeccc
Confidence 1133456
Q ss_pred cccEEEEEecC---Ce--eEeeeCCCeEEEEeCCCCceEEeeeC-CceEEEEEecCCcEEEeec--CCCeEEEEeccccc
Q psy18231 378 RDSITSVHVSD---HE--ILTASLDCRIRRYDIRTGNLVTDYVG-EPIVDACFTRDCQCILTCS--TDECLRLFDKATGE 449 (540)
Q Consensus 378 ~~~v~~l~~~~---~~--l~~~~~dg~i~iwd~~~~~~~~~~~~-~~i~~~~~sp~~~~l~~~~--~dg~i~i~d~~~~~ 449 (540)
...|.++.+.+ .. +++++.++.|++||.+.......... ..+..+.|+|+++.+++++ .|+.|++||+++++
T Consensus 196 ~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~ 275 (318)
T 4ggc_A 196 QGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMA 275 (318)
T ss_dssp CSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCC
T ss_pred CCceEEEEecCCCCcEEEEEecCCCCEEEEEecccccccccccceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCc
Confidence 67888888887 33 34677899999999998887766654 6899999999998887654 79999999999999
Q ss_pred hhhhhccCcCCcceEEEEecCCCCeEEEeeCCCcEEEEEecCCc
Q psy18231 450 LLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSS 493 (540)
Q Consensus 450 ~~~~~~~~~~~v~~~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~ 493 (540)
++.++.+|...|+++ +|+|+|++|++|+.||+|+|||+.+..
T Consensus 276 ~~~~l~gH~~~V~~l--~~spdg~~l~S~s~D~~v~iWd~~~~d 317 (318)
T 4ggc_A 276 KVAELKGHTSRVLSL--TMSPDGATVASAAADETLRLWRCFELD 317 (318)
T ss_dssp EEEEECCCSSCEEEE--EECTTSSCEEEEETTTEEEEECCSCCC
T ss_pred EEEEEcCCCCCEEEE--EEcCCCCEEEEEecCCeEEEEECCCCC
Confidence 999999999999988 899999999999999999999987654
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.5e-36 Score=287.74 Aligned_cols=263 Identities=14% Similarity=0.156 Sum_probs=219.4
Q ss_pred hhhhhcccccceeeeeccccccee-----eeeecCeEEEEeCC-CCCEEEEeeCCCcEEEEcCCCCeeEEEeecC---Cc
Q psy18231 137 TRILYELPKEWSIRVYRPLTVNRE-----LFVLSGLMHTRFPV-DGSYCLTCGSDKKIKLWNPYRNLLLKTYGGH---AH 207 (540)
Q Consensus 137 ~~~~~~~~~~~~i~~~~~~~~~~~-----~~h~~~v~~v~~sp-dg~~lat~~~dg~i~iwd~~~~~~~~~~~~h---~~ 207 (540)
..+++.++.++.|++|+..+.... .+|.+.|.+++|+| ++++|++++.|+.|++||+.+ ..+..+..| ..
T Consensus 86 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~~~~~~~ 164 (383)
T 3ei3_B 86 PTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSG-SVIQVFAKTDSWDY 164 (383)
T ss_dssp TTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTEEEEEETTS-CEEEEEECCCCSSC
T ss_pred CCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECCC-CceEEEeccCCCCC
Confidence 357778889999999998865432 24899999999999 789999999999999999985 555555444 48
Q ss_pred ceeEEEEeeCCCeEEEeeCCCeEEEEEcCCCceeEeccccCCceeEEEECCCCC-EEEEecCCCcEEEEEecCCCCCCcc
Q psy18231 208 EVNDATAACDSSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSS-VVISGSQDNTVMMWDVKSRSHHPIQ 286 (540)
Q Consensus 208 ~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~ 286 (540)
.|.+++|+|++++|++++.|+.|++||+ +++.+..+.+|...|.+++|+|+++ +|++++.|+.|++||+++.+....
T Consensus 165 ~v~~~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~- 242 (383)
T 3ei3_B 165 WYCCVDVSVSRQMLATGDSTGRLLLLGL-DGHEIFKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNS- 242 (383)
T ss_dssp CEEEEEEETTTTEEEEEETTSEEEEEET-TSCEEEEEECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTC-
T ss_pred CeEEEEECCCCCEEEEECCCCCEEEEEC-CCCEEEEeccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccc-
Confidence 8999999999999999999999999999 6788888999999999999999998 999999999999999987542100
Q ss_pred hhhhhHhhhhcCCceeEEEEeecccccccccCceeeEEEeeeecccccceeeeeeccceeEEEeecccceeccccccccc
Q psy18231 287 VRCLNEALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISI 366 (540)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (540)
T Consensus 243 -------------------------------------------------------------------------------- 242 (383)
T 3ei3_B 243 -------------------------------------------------------------------------------- 242 (383)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccchhhhhhcccccEEEEEecC---CeeEeeeCCCeEEEEeCCCCceEEeeeC-------------------CceEEEEE
Q psy18231 367 HNSCFQALKEARDSITSVHVSD---HEILTASLDCRIRRYDIRTGNLVTDYVG-------------------EPIVDACF 424 (540)
Q Consensus 367 ~~~~~~~~~~~~~~v~~l~~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~~-------------------~~i~~~~~ 424 (540)
.. ...+|...|.+++|+| .++++++.|+.|++||+++++....+.+ ..+..++|
T Consensus 243 ---~~-~~~~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 318 (383)
T 3ei3_B 243 ---YI-AEMPHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGR 318 (383)
T ss_dssp ---EE-EEEECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEEC
T ss_pred ---eE-EEecCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCccccccccccccccccccceEEeccCCCCceEEEe
Confidence 01 1125788999999988 7899999999999999998876655542 23555777
Q ss_pred ecCCcEEEeecCCCeEEEEeccccchhhhhccC--cCCcceEEEEecCCCCeEEEeeCCCcEEEEEecC
Q psy18231 425 TRDCQCILTCSTDECLRLFDKATGELLEEYKGH--KSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVD 491 (540)
Q Consensus 425 sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~--~~~v~~~~~~~s~~~~~l~s~s~dg~i~iwd~~~ 491 (540)
+|++++ +++.|+.|++||+.+++.+..+.+| ...+..+ +|+|++++|++|+ ||.|++||+++
T Consensus 319 s~dg~~--s~s~d~~i~iwd~~~~~~~~~l~~~~~~~~~~~~--~~s~~g~~l~s~s-d~~i~iw~~~~ 382 (383)
T 3ei3_B 319 YPDDQL--LLNDKRTIDIYDANSGGLVHQLRDPNAAGIISLN--KFSPTGDVLASGM-GFNILIWNRED 382 (383)
T ss_dssp BCCTTT--CTTCCCCEEEEETTTCCEEEEECBTTBCSCCCEE--EECTTSSEEEEEE-TTEEEEEECC-
T ss_pred cCCccc--ccCCCCeEEEEecCCCceeeeecCCCCCceEEEE--EEecCccEEEEec-CCcEEEEecCC
Confidence 888877 8889999999999999999998874 4555555 8999999999997 99999999864
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-35 Score=285.34 Aligned_cols=276 Identities=18% Similarity=0.235 Sum_probs=239.2
Q ss_pred ceeccccchhhhhhcccccceeeeecccccce---eeeeecCeEEEEeCCCCCEEEEeeCCCcEEEEcCCCCeeEEEeec
Q psy18231 128 LLFSLPRTITRILYELPKEWSIRVYRPLTVNR---ELFVLSGLMHTRFPVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGG 204 (540)
Q Consensus 128 ~~~s~~~~~~~~~~~~~~~~~i~~~~~~~~~~---~~~h~~~v~~v~~spdg~~lat~~~dg~i~iwd~~~~~~~~~~~~ 204 (540)
+.|+++ ...++.++.++.|++|+..+... ...|.+.|.+++|+|++++|++++.||.|++||+.+++.+..+.
T Consensus 38 ~~~s~~---~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~- 113 (369)
T 3zwl_B 38 VKYNKE---GDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQCVATWK- 113 (369)
T ss_dssp EEECTT---SCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEE-
T ss_pred EEEcCC---CCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEee-
Confidence 444544 34566778899999999876542 34599999999999999999999999999999999999999888
Q ss_pred CCcceeEEEEeeCCCeEEEeeCC-----CeEEEEEcCCCc-----------eeEeccccCC--ceeEEEECCCCCEEEEe
Q psy18231 205 HAHEVNDATAACDSSQIASGASD-----KSVILWEVTTGQ-----------PVRRWREHAS--KVTCVKFNEDSSVVISG 266 (540)
Q Consensus 205 h~~~v~~l~~sp~~~~l~s~s~d-----g~i~iwd~~~~~-----------~~~~~~~h~~--~v~~~~~~~~~~~l~s~ 266 (540)
|...|.+++|+|++++|++++.+ +.|++||+..+. .+..+..|.. .+.+++|+|++++|+++
T Consensus 114 ~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 193 (369)
T 3zwl_B 114 SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAG 193 (369)
T ss_dssp CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGCEEEEE
T ss_pred cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEEEcCCCCEEEEE
Confidence 89999999999999999999999 999999998764 3344455666 99999999999999999
Q ss_pred cCCCcEEEEEecCCCCCCcchhhhhHhhhhcCCceeEEEEeecccccccccCceeeEEEeeeecccccceeeeeecccee
Q psy18231 267 SQDNTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHL 346 (540)
Q Consensus 267 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (540)
+.||.|++||+++...
T Consensus 194 ~~dg~i~i~d~~~~~~---------------------------------------------------------------- 209 (369)
T 3zwl_B 194 HKDGKISKYDVSNNYE---------------------------------------------------------------- 209 (369)
T ss_dssp ETTSEEEEEETTTTTE----------------------------------------------------------------
T ss_pred cCCCEEEEEECCCCcE----------------------------------------------------------------
Confidence 9999999999987321
Q ss_pred EEEeecccceecccccccccccchhhhhhcccccEEEEEecC--CeeEeeeCCCeEEEEeCCCCceEEeeeC-CceEEEE
Q psy18231 347 MVLLDFLGSTQIGDVTPISIHNSCFQALKEARDSITSVHVSD--HEILTASLDCRIRRYDIRTGNLVTDYVG-EPIVDAC 423 (540)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~i~~~~ 423 (540)
....+..|...|.+++|+| .+|++++.|+.|++||+++++.+..+.. ..+.+++
T Consensus 210 -----------------------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~ 266 (369)
T 3zwl_B 210 -----------------------YVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYETDCPLNTAV 266 (369)
T ss_dssp -----------------------EEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEE
T ss_pred -----------------------eEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCCCceeeeecCCCCceeEE
Confidence 1114456788999999998 7899999999999999999998888864 6899999
Q ss_pred EecCCcEEEeecCCC--------------eEEEEeccccchhhhhccCcCCcceEEEEecCCCCeEEEeeCCCcEEEEEe
Q psy18231 424 FTRDCQCILTCSTDE--------------CLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQL 489 (540)
Q Consensus 424 ~sp~~~~l~~~~~dg--------------~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~s~~~~~l~s~s~dg~i~iwd~ 489 (540)
|+|+++++++++.++ .+++||..+++.+..+.+|...|..+ +|+|++++|++++.||.|++|++
T Consensus 267 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~--~~s~~~~~l~s~~~dg~v~iw~~ 344 (369)
T 3zwl_B 267 ITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFGPLNTV--AISPQGTSYASGGEDGFIRLHHF 344 (369)
T ss_dssp ECSSSSEEEEEECCC-------------CEEEEEETTTCCEEEEEECCSSCEEEE--EECTTSSEEEEEETTSEEEEEEE
T ss_pred ecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhheecccCcEEEE--EECCCCCEEEEEcCCCeEEEEEC
Confidence 999999999999988 89999999999999999999999888 89999999999999999999999
Q ss_pred cCCccee
Q psy18231 490 VDSSQIS 496 (540)
Q Consensus 490 ~~~~~~~ 496 (540)
.++....
T Consensus 345 ~~~~~~~ 351 (369)
T 3zwl_B 345 EKSYFDF 351 (369)
T ss_dssp CHHHHTC
T ss_pred ccccchh
Confidence 8765443
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-36 Score=294.46 Aligned_cols=279 Identities=15% Similarity=0.183 Sum_probs=218.5
Q ss_pred cceeccccchhhhhhcccccceeeeecccccc-----eeeeeecCeEEEEeCC-CCCEEEEeeCCCcEEEEcCCCCeeEE
Q psy18231 127 PLLFSLPRTITRILYELPKEWSIRVYRPLTVN-----RELFVLSGLMHTRFPV-DGSYCLTCGSDKKIKLWNPYRNLLLK 200 (540)
Q Consensus 127 ~~~~s~~~~~~~~~~~~~~~~~i~~~~~~~~~-----~~~~h~~~v~~v~~sp-dg~~lat~~~dg~i~iwd~~~~~~~~ 200 (540)
.+.|+|. ...+++.++.+++|++|+..... ...+|.+.|++++|+| ++++|++|+.||+|++||++++....
T Consensus 124 ~l~~~P~--~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~~~ 201 (435)
T 4e54_B 124 SLAWHPT--HPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNILRV 201 (435)
T ss_dssp EEEECSS--CTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSCEEEE
T ss_pred EEEEeCC--CCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCCceeE
Confidence 4455543 34577889999999999986543 2246999999999998 78999999999999999998765544
Q ss_pred Eeec--CCcceeEEEEeeCCCeEEEeeCCCeEEEEEcCCCceeEeccccCCceeEEEECCCCC-EEEEecCCCcEEEEEe
Q psy18231 201 TYGG--HAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSS-VVISGSQDNTVMMWDV 277 (540)
Q Consensus 201 ~~~~--h~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~s~~~dg~i~iwd~ 277 (540)
.... +...+.+++|+|++++|++|+.||.|++||++ ++.+..+.+|...|.+++|+|++. +|++++.|++|++||+
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~-~~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~ 280 (435)
T 4e54_B 202 FASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMD-GKELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDL 280 (435)
T ss_dssp EECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESS-SCBCCCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEET
T ss_pred EeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccC-cceeEEEecccceEEeeeecCCCceEEEEecCcceeeEEec
Confidence 4333 34467899999999999999999999999985 566778899999999999999875 7889999999999999
Q ss_pred cCCCCCCcchhhhhHhhhhcCCceeEEEEeecccccccccCceeeEEEeeeecccccceeeeeeccceeEEEeeccccee
Q psy18231 278 KSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQ 357 (540)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (540)
++.+....
T Consensus 281 ~~~~~~~~------------------------------------------------------------------------ 288 (435)
T 4e54_B 281 RQVRGKAS------------------------------------------------------------------------ 288 (435)
T ss_dssp TTCCSSSC------------------------------------------------------------------------
T ss_pred ccccccce------------------------------------------------------------------------
Confidence 87652111
Q ss_pred cccccccccccchhhhhhcccccEEEEEecC--CeeEeeeCCCeEEEEeCCCCceEEeeeCC--------ceEEEEEecC
Q psy18231 358 IGDVTPISIHNSCFQALKEARDSITSVHVSD--HEILTASLDCRIRRYDIRTGNLVTDYVGE--------PIVDACFTRD 427 (540)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~--------~i~~~~~sp~ 427 (540)
+....+|...|.+++|+| .+|++++.||.|++||+.+++....+..+ .+....|+|+
T Consensus 289 -------------~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (435)
T 4e54_B 289 -------------FLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWHPR 355 (435)
T ss_dssp -------------CSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECCCCCCCCSSSCCCBCEECSS
T ss_pred -------------EEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEecccccccccceeEEEEEcCC
Confidence 113357889999999998 79999999999999999998877665431 2334566666
Q ss_pred CcEEEeec------------CCCeEEEEeccccchhhhhc-cCcCCcceEEEEecCCCCeEEEeeCCCcEEEEEecCCcc
Q psy18231 428 CQCILTCS------------TDECLRLFDKATGELLEEYK-GHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQ 494 (540)
Q Consensus 428 ~~~l~~~~------------~dg~i~i~d~~~~~~~~~~~-~~~~~v~~~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~ 494 (540)
+.++++++ .++.|++||..+++.+..+. +|...|.++. +|+|+|++|++|+ |++|+|||+++++.
T Consensus 356 ~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s~~-~fspdg~~lasg~-d~~i~iW~~~~gk~ 433 (435)
T 4e54_B 356 YNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLN-EFNPMGDTLASAM-GYHILIWSQQEART 433 (435)
T ss_dssp SSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSSCCCCCCEE-EECTTSSCEEEEC-SSEEEECCCC----
T ss_pred CCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCCCCcEEEEE-EECCCCCEEEEEc-CCcEEEEECCcCee
Confidence 66665543 34679999999999887764 6777777763 6999999999886 78999999998875
Q ss_pred e
Q psy18231 495 I 495 (540)
Q Consensus 495 ~ 495 (540)
.
T Consensus 434 r 434 (435)
T 4e54_B 434 R 434 (435)
T ss_dssp -
T ss_pred e
Confidence 3
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-35 Score=288.12 Aligned_cols=317 Identities=15% Similarity=0.180 Sum_probs=228.5
Q ss_pred hhhhhcccccceeeeecccccce--ee--------------eeecCeEEEEeCC-CCCEEEEeeCCCcEEEEcCCCCeeE
Q psy18231 137 TRILYELPKEWSIRVYRPLTVNR--EL--------------FVLSGLMHTRFPV-DGSYCLTCGSDKKIKLWNPYRNLLL 199 (540)
Q Consensus 137 ~~~~~~~~~~~~i~~~~~~~~~~--~~--------------~h~~~v~~v~~sp-dg~~lat~~~dg~i~iwd~~~~~~~ 199 (540)
...++.++.++.|++|+..+... .. .|...|.+++|+| ++++|++++.||.|++||+.+++..
T Consensus 56 ~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~ 135 (408)
T 4a11_B 56 GRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTA 135 (408)
T ss_dssp CCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEEE
T ss_pred CCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCccc
Confidence 45667788899999999876432 11 3999999999999 7889999999999999999999988
Q ss_pred EEeecCCcceeEEEEeeC---CCeEEEeeCCCeEEEEEcCCCceeEeccccCCceeEEEECCCCC-EEEEecCCCcEEEE
Q psy18231 200 KTYGGHAHEVNDATAACD---SSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSS-VVISGSQDNTVMMW 275 (540)
Q Consensus 200 ~~~~~h~~~v~~l~~sp~---~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~s~~~dg~i~iw 275 (540)
..+. +...+.++.|+|. +.++++++.|+.|++||+++++.+..+..|...|.+++|+|+++ +|++++.||.|++|
T Consensus 136 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~ 214 (408)
T 4a11_B 136 DVFN-FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLW 214 (408)
T ss_dssp EEEE-CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEE
T ss_pred eecc-CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEE
Confidence 8887 7889999999984 45999999999999999999999999999999999999999988 58999999999999
Q ss_pred EecCCCCCCcchhhhhHhhhhcCCceeEEEEeecccccccccCceeeEEEeeeecccccceeeeeeccceeEEEeecccc
Q psy18231 276 DVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGS 355 (540)
Q Consensus 276 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (540)
|+++...........
T Consensus 215 d~~~~~~~~~~~~~~----------------------------------------------------------------- 229 (408)
T 4a11_B 215 DVRRASGCLITLDQH----------------------------------------------------------------- 229 (408)
T ss_dssp ETTCSSCCSEECCTT-----------------------------------------------------------------
T ss_pred ECCCCCccccccccc-----------------------------------------------------------------
Confidence 998765211110000
Q ss_pred eecccccccccccchhhhhhcccccEEEEEecC--CeeEeeeCCCeEEEEeCCCCceEEeeeC-------CceEEEEEec
Q psy18231 356 TQIGDVTPISIHNSCFQALKEARDSITSVHVSD--HEILTASLDCRIRRYDIRTGNLVTDYVG-------EPIVDACFTR 426 (540)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~-------~~i~~~~~sp 426 (540)
..............|...|.+++|+| .++++++.||.|++||+++++....+.. ..+.......
T Consensus 230 -------~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (408)
T 4a11_B 230 -------NGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCG 302 (408)
T ss_dssp -------TTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCS
T ss_pred -------ccccceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEEECCCCccceeccccccccccccceeEEecC
Confidence 00000111224467899999999998 7899999999999999999876554432 1222223334
Q ss_pred CCcEEEeecCCCeEEEEeccccchhhhhccCcCCcceEEEEecCCCCeEEEeeCCCcEEEEEecCCcceeEEEeccccee
Q psy18231 427 DCQCILTCSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAV 506 (540)
Q Consensus 427 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~ 506 (540)
.+..+++++.++.|++||+.+++.+..+.+|...|..+ +|+|++++|++++.||.|++||+.+++.+.... .+.
T Consensus 303 ~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~--~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~--~~~-- 376 (408)
T 4a11_B 303 CSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCC--VFQSNFQELYSGSRDCNILAWVPSLYEPVPDDD--ETT-- 376 (408)
T ss_dssp SSSCEEEEEETTEEEEEETTTCCEEEEECCCSSCEEEE--EEETTTTEEEEEETTSCEEEEEECC---------------
T ss_pred CCceEEEEecCCEEEEEECcCCcceeeeccCCCeEEEE--EEcCCCCEEEEECCCCeEEEEeCCCCCccCCCC--ceE--
Confidence 45667777889999999999999999999999999888 899999999999999999999999998876654 222
Q ss_pred eeEEEEcCC-CcEEEeec-CCeeEEEEcc
Q psy18231 507 VNSLCSHPT-RKHIMSAC-GNNVKLWTAE 533 (540)
Q Consensus 507 v~~l~~s~d-~~~l~s~~-d~~i~iw~~~ 533 (540)
....+.+. ...+.+++ |+.+++|+..
T Consensus 377 -~~~~~~~~~~~~~~~~~~~~~~~~W~~~ 404 (408)
T 4a11_B 377 -TKSQLNPAFEDAWSSSDEEGGTSAWSHP 404 (408)
T ss_dssp -----------------------------
T ss_pred -eccccccccceeecccCccCceeecCCc
Confidence 11233333 23344455 9999999865
|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.8e-36 Score=287.86 Aligned_cols=251 Identities=16% Similarity=0.206 Sum_probs=211.3
Q ss_pred CeeEEEeecCCcceeEEEEeeCCCeEEEeeCCCeEEEEEcC--CCceeEeccccCCceeEEEECCC--CCEEEEecCCCc
Q psy18231 196 NLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVT--TGQPVRRWREHASKVTCVKFNED--SSVVISGSQDNT 271 (540)
Q Consensus 196 ~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~--~~~~~~~~~~h~~~v~~~~~~~~--~~~l~s~~~dg~ 271 (540)
|+++..+.+|.+.|++++|+|++++|++++.||.|++||+. +++.+..+.+|...|.+++|+++ +++|++++.||.
T Consensus 1 G~~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~ 80 (379)
T 3jrp_A 1 GSMVVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGK 80 (379)
T ss_dssp ----CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSC
T ss_pred CCccEEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCE
Confidence 34566788999999999999999999999999999999998 56777888999999999999987 899999999999
Q ss_pred EEEEEecCCCCCCcchhhhhHhhhhcCCceeEEEEeecccccccccCceeeEEEeeeecccccceeeeeeccceeEEEee
Q psy18231 272 VMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLD 351 (540)
Q Consensus 272 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (540)
|++||+.+++...
T Consensus 81 v~iwd~~~~~~~~------------------------------------------------------------------- 93 (379)
T 3jrp_A 81 VLIWKEENGRWSQ------------------------------------------------------------------- 93 (379)
T ss_dssp EEEEEEETTEEEE-------------------------------------------------------------------
T ss_pred EEEEEcCCCceeE-------------------------------------------------------------------
Confidence 9999998764111
Q ss_pred cccceecccccccccccchhhhhhcccccEEEEEecC----CeeEeeeCCCeEEEEeCCCCce--EEeee--CCceEEEE
Q psy18231 352 FLGSTQIGDVTPISIHNSCFQALKEARDSITSVHVSD----HEILTASLDCRIRRYDIRTGNL--VTDYV--GEPIVDAC 423 (540)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~----~~l~~~~~dg~i~iwd~~~~~~--~~~~~--~~~i~~~~ 423 (540)
...+..|...|.+++|+| ..+++++.|+.|++||++++.. ...+. ...|.+++
T Consensus 94 -------------------~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~ 154 (379)
T 3jrp_A 94 -------------------IAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSAS 154 (379)
T ss_dssp -------------------EEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEE
T ss_pred -------------------eeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEE
Confidence 114456888999999997 4799999999999999998743 23333 36899999
Q ss_pred Eec-------------CCcEEEeecCCCeEEEEeccccc----hhhhhccCcCCcceEEEEecCC---CCeEEEeeCCCc
Q psy18231 424 FTR-------------DCQCILTCSTDECLRLFDKATGE----LLEEYKGHKSGDFRIECCLDSK---DSQIFCGSSDGK 483 (540)
Q Consensus 424 ~sp-------------~~~~l~~~~~dg~i~i~d~~~~~----~~~~~~~~~~~v~~~~~~~s~~---~~~l~s~s~dg~ 483 (540)
|+| ++++|++++.|+.|++||+++++ .+..+.+|...+.++ +|+|+ +++|++++.||.
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~--~~sp~~~~~~~l~s~~~dg~ 232 (379)
T 3jrp_A 155 WAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDV--AWSPTVLLRSYLASVSQDRT 232 (379)
T ss_dssp ECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEE--EECCCCSSSEEEEEEETTSC
T ss_pred EcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEE--EECCCCCCCCeEEEEeCCCE
Confidence 999 69999999999999999998764 446778899988888 89999 899999999999
Q ss_pred EEEEEecCCcce---eEEEecccceeeeEEEEcCCCcEEEeec-CCeeEEEEccc
Q psy18231 484 IYKWQLVDSSQI---STLIHSVGKAVVNSLCSHPTRKHIMSAC-GNNVKLWTAEE 534 (540)
Q Consensus 484 i~iwd~~~~~~~---~~~~~~~~~~~v~~l~~s~d~~~l~s~~-d~~i~iw~~~~ 534 (540)
|++||+.++... ..+....|...|.+++|+|++++|++++ ||.|++|++..
T Consensus 233 i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~ 287 (379)
T 3jrp_A 233 CIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL 287 (379)
T ss_dssp EEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEEE
T ss_pred EEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCCC
Confidence 999999887532 2222224888999999999999999999 99999999974
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.7e-35 Score=286.94 Aligned_cols=282 Identities=16% Similarity=0.155 Sum_probs=229.5
Q ss_pred eecCeEEEEeCCCCCEEEEeeCCCcEEEEcCCCCe---eEEEeec-----------------------------------
Q psy18231 163 VLSGLMHTRFPVDGSYCLTCGSDKKIKLWNPYRNL---LLKTYGG----------------------------------- 204 (540)
Q Consensus 163 h~~~v~~v~~spdg~~lat~~~dg~i~iwd~~~~~---~~~~~~~----------------------------------- 204 (540)
...++.+++|+|||++|+++. ++.|++||+.+++ .+..+..
T Consensus 3 ~~~p~~~v~~s~dg~~l~~~~-~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (450)
T 2vdu_B 3 VIHPLQNLLTSRDGSLVFAII-KNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKG 81 (450)
T ss_dssp EECCCCEEEECSSSSEEEEEE-TTEEEEEEEETTTEEEEEEEEECCC---------------------------------
T ss_pred ccccEEEEEecCCCCEEEEEe-CCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcC
Confidence 346889999999999776664 7899999999998 6666553
Q ss_pred -------------------CCcceeEEEEeeCCCeE-EEeeCCCeEEEEEcC--CCceeEecc--ccCCceeEEEECCCC
Q psy18231 205 -------------------HAHEVNDATAACDSSQI-ASGASDKSVILWEVT--TGQPVRRWR--EHASKVTCVKFNEDS 260 (540)
Q Consensus 205 -------------------h~~~v~~l~~sp~~~~l-~s~s~dg~i~iwd~~--~~~~~~~~~--~h~~~v~~~~~~~~~ 260 (540)
|.+.|++++|+|++++| ++++.||.|++||+. +++.+..+. .|...|.+++|+|++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~ 161 (450)
T 2vdu_B 82 DSIKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDD 161 (450)
T ss_dssp ------------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTS
T ss_pred ccccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCC
Confidence 33379999999999996 899999999999999 888888876 567899999999999
Q ss_pred CEEEEecCCCcEEEEEecCCCCCCcchhhhhHhhhhcCCceeEEEEeecccccccccCceeeEEEeeeecccccceeeee
Q psy18231 261 SVVISGSQDNTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVL 340 (540)
Q Consensus 261 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (540)
++|++++.||.|++|++.+......
T Consensus 162 ~~l~~~~~~g~v~~~~~~~~~~~~~------------------------------------------------------- 186 (450)
T 2vdu_B 162 TTVIIADKFGDVYSIDINSIPEEKF------------------------------------------------------- 186 (450)
T ss_dssp SEEEEEETTSEEEEEETTSCCCSSC-------------------------------------------------------
T ss_pred CEEEEEeCCCcEEEEecCCcccccc-------------------------------------------------------
Confidence 9999999999999999987652110
Q ss_pred eccceeEEEeecccceecccccccccccchhhhhhcccccEEEEEecCC-----eeEeeeCCCeEEEEeCCCCceEEeee
Q psy18231 341 MSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEARDSITSVHVSDH-----EILTASLDCRIRRYDIRTGNLVTDYV 415 (540)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~-----~l~~~~~dg~i~iwd~~~~~~~~~~~ 415 (540)
....+.+|...|.+++|+|. +|++++.|+.|++||+++++.+..+.
T Consensus 187 -----------------------------~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~ 237 (450)
T 2vdu_B 187 -----------------------------TQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWL 237 (450)
T ss_dssp -----------------------------CCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEEC
T ss_pred -----------------------------cceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeee
Confidence 01145678899999999986 89999999999999999998887733
Q ss_pred ---CCceEEEEEecCCcEEEeecCCCeEEEEeccccchhhhhccC-------------------------cCCcceEEEE
Q psy18231 416 ---GEPIVDACFTRDCQCILTCSTDECLRLFDKATGELLEEYKGH-------------------------KSGDFRIECC 467 (540)
Q Consensus 416 ---~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-------------------------~~~v~~~~~~ 467 (540)
...|.+++|+ ++++|++++.|+.|++||+.+++.+..+..+ ...+..+ +
T Consensus 238 ~~h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i--~ 314 (450)
T 2vdu_B 238 FGHKHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKI--I 314 (450)
T ss_dssp CCCSSCEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEE--E
T ss_pred cCCCCceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEE--E
Confidence 3689999999 9999999999999999999999877666532 2234444 8
Q ss_pred ecCCCCeEEEee-CCCcEEEEEe--cCC---cceeEEEecccceeeeEEEEcCCCcEEEeec-C------CeeEEEEccc
Q psy18231 468 LDSKDSQIFCGS-SDGKIYKWQL--VDS---SQISTLIHSVGKAVVNSLCSHPTRKHIMSAC-G------NNVKLWTAEE 534 (540)
Q Consensus 468 ~s~~~~~l~s~s-~dg~i~iwd~--~~~---~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~-d------~~i~iw~~~~ 534 (540)
|+|++++|++++ .|+.|++|++ .++ +.+..+. .| ..|.+++|+|++.++++++ + ..|.+|.+..
T Consensus 315 ~~~~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~--~~-~~v~~~~~~~~~~~v~~~~~~~~~~~~~~i~v~~~~~ 391 (450)
T 2vdu_B 315 KSKNLPFVAFFVEATKCIIILEMSEKQKGDLALKQIIT--FP-YNVISLSAHNDEFQVTLDNKESSGVQKNFAKFIEYNL 391 (450)
T ss_dssp ECSSSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEE--CS-SCEEEEEEETTEEEEEECCTTCCSSCCCSEEEEEEET
T ss_pred EeCCCCEEEEEECCCCeEEEEEeccCCCCceeeccEec--cC-CceEEEEecCCcEEEEEecccCCCCCCcceEEEEEEc
Confidence 999999999998 8999999999 555 5566666 56 7899999999654444443 3 3479998764
Q ss_pred c
Q psy18231 535 D 535 (540)
Q Consensus 535 ~ 535 (540)
+
T Consensus 392 ~ 392 (450)
T 2vdu_B 392 N 392 (450)
T ss_dssp T
T ss_pred C
Confidence 3
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-34 Score=284.32 Aligned_cols=312 Identities=15% Similarity=0.172 Sum_probs=241.2
Q ss_pred cceeccccchhhhhhcccccceeeeecc----cccc--------eeee-----------eecCeEEEEeCCCCCEEEEee
Q psy18231 127 PLLFSLPRTITRILYELPKEWSIRVYRP----LTVN--------RELF-----------VLSGLMHTRFPVDGSYCLTCG 183 (540)
Q Consensus 127 ~~~~s~~~~~~~~~~~~~~~~~i~~~~~----~~~~--------~~~~-----------h~~~v~~v~~spdg~~lat~~ 183 (540)
.+.|+++. ..+++.++.++.|++|+. .+.. .... |.+.|++++|+|++++|++++
T Consensus 50 ~~~~s~~~--~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 127 (425)
T 1r5m_A 50 SSTWNPLD--ESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGNSIVTGV 127 (425)
T ss_dssp EEEECSSC--TTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTTSSEEEEEE
T ss_pred EEEECCCC--CcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCCCCEEEEEe
Confidence 44555553 336677888999999998 5543 1111 577999999999999999999
Q ss_pred CCCcEEEEcCCCCeeEEEeecCCcceeEEEEeeCCCeEEEeeCCCeEEEEEcCCCceeEeccccCCc-------------
Q psy18231 184 SDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPVRRWREHASK------------- 250 (540)
Q Consensus 184 ~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~------------- 250 (540)
.||.|++|| .+++.+..+.+|...|.+++|+|++++|++++.|+.|++||+.+++.+..+..+...
T Consensus 128 ~dg~i~i~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (425)
T 1r5m_A 128 ENGELRLWN-KTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSINAENHSGDG 206 (425)
T ss_dssp TTSCEEEEE-TTSCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEECCC---------------C
T ss_pred CCCeEEEEe-CCCCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeccccCccceeeccccCCc
Confidence 999999999 788889999999999999999999999999999999999999999999888887776
Q ss_pred --eeEEEECCCCCEEEEecCCCcEEEEEecCCCCCCcchhhhhHhhhhcCCceeEEEEeecccccccccCceeeEEEeee
Q psy18231 251 --VTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFR 328 (540)
Q Consensus 251 --v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (540)
+.++.|++++ .+++++.||.|++||+++++..... ..+...+..+ .+.+.+
T Consensus 207 ~~~~~~~~~~~~-~~~~~~~~g~i~~~d~~~~~~~~~~--------~~~~~~i~~~---~~~~~~--------------- 259 (425)
T 1r5m_A 207 SLGVDVEWVDDD-KFVIPGPKGAIFVYQITEKTPTGKL--------IGHHGPISVL---EFNDTN--------------- 259 (425)
T ss_dssp CCBSCCEEEETT-EEEEECGGGCEEEEETTCSSCSEEE--------CCCSSCEEEE---EEETTT---------------
T ss_pred ceeeEEEEcCCC-EEEEEcCCCeEEEEEcCCCceeeee--------ccCCCceEEE---EECCCC---------------
Confidence 9999999875 5888899999999999876521111 0111111111 111100
Q ss_pred ecccccceeeeeeccceeEEEeecccceecccccccccccchhhhhhcccccEEEEEecC-CeeEeeeCCCeEEEEeCCC
Q psy18231 329 CKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEARDSITSVHVSD-HEILTASLDCRIRRYDIRT 407 (540)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~-~~l~~~~~dg~i~iwd~~~ 407 (540)
...+....++.+.+|+.... .....+..|...|.+++|+| ..+++++.|+.|++||+++
T Consensus 260 -------~~l~~~~~d~~i~i~d~~~~-------------~~~~~~~~~~~~i~~~~~~~~~~l~~~~~d~~i~i~d~~~ 319 (425)
T 1r5m_A 260 -------KLLLSASDDGTLRIWHGGNG-------------NSQNCFYGHSQSIVSASWVGDDKVISCSMDGSVRLWSLKQ 319 (425)
T ss_dssp -------TEEEEEETTSCEEEECSSSB-------------SCSEEECCCSSCEEEEEEETTTEEEEEETTSEEEEEETTT
T ss_pred -------CEEEEEcCCCEEEEEECCCC-------------ccceEecCCCccEEEEEECCCCEEEEEeCCCcEEEEECCC
Confidence 01112223444444443322 12335567889999999999 6999999999999999999
Q ss_pred CceEEeeeC--CceEEEEEecCCcEEEeecCCCeEEEEeccccc--------------------hhhhhccCcC--Ccce
Q psy18231 408 GNLVTDYVG--EPIVDACFTRDCQCILTCSTDECLRLFDKATGE--------------------LLEEYKGHKS--GDFR 463 (540)
Q Consensus 408 ~~~~~~~~~--~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~--------------------~~~~~~~~~~--~v~~ 463 (540)
++.+..+.. ..+.+++|+|++++|++++.||.|++||+.+++ .+..+..|.. .+..
T Consensus 320 ~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 399 (425)
T 1r5m_A 320 NTLLALSIVDGVPIFAGRISQDGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFD 399 (425)
T ss_dssp TEEEEEEECTTCCEEEEEECTTSSEEEEEETTSCEEEEECHHHHC--------------CEECCEEEEECCTTCCCCEEE
T ss_pred CcEeEecccCCccEEEEEEcCCCCEEEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEE
Confidence 998888765 589999999999999999999999999999888 7888888876 7777
Q ss_pred EEEEecCCCCeEEEeeCCCcEEEEEec
Q psy18231 464 IECCLDSKDSQIFCGSSDGKIYKWQLV 490 (540)
Q Consensus 464 ~~~~~s~~~~~l~s~s~dg~i~iwd~~ 490 (540)
+ +|+|++++|++++.||.|++||++
T Consensus 400 ~--~~s~~~~~l~~~~~dg~i~iw~~~ 424 (425)
T 1r5m_A 400 L--SWNCAGNKISVAYSLQEGSVVAIP 424 (425)
T ss_dssp E--EECTTSSEEEEEESSSCCEEEECC
T ss_pred E--EccCCCceEEEEecCceEEEEeec
Confidence 7 899999999999999999999975
|
| >3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A | Back alignment and structure |
|---|
Probab=100.00 E-value=9.6e-35 Score=276.77 Aligned_cols=276 Identities=11% Similarity=0.118 Sum_probs=213.9
Q ss_pred eeeecCeEEEEeCCCCCEEEEeeCCCcEEEEcCCCCeeEEEeecCCcceeEEEEeeCCCeE-EEeeCCCeEEEEEcCCCc
Q psy18231 161 LFVLSGLMHTRFPVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQI-ASGASDKSVILWEVTTGQ 239 (540)
Q Consensus 161 ~~h~~~v~~v~~spdg~~lat~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l-~s~s~dg~i~iwd~~~~~ 239 (540)
..|.+.|.+++|+|||++||+|+.++ ++|||+.+++....... ..+..+++.++++.+ ++++.|++|++||+.+++
T Consensus 16 ~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~d~~v~iWd~~~~~ 92 (355)
T 3vu4_A 16 NHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIMSQEM--RHLSKVRMLHRTNYVAFVTGVKEVVHIWDDVKKQ 92 (355)
T ss_dssp ---CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEEEEEC--SCCCEEEECTTSSEEEEECSSTTEEEEEETTTTE
T ss_pred ccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceeeeeec--CCeEEEEEcCCCCEEEEEECCccEEEEEECCCCc
Confidence 46899999999999999999998665 78999988877665442 358888999988887 567888999999999999
Q ss_pred eeEeccccCCceeEEEECCCCCEEEEecCCCcEEEEEecCC-CCCCcchhhhhHhhhhcCCceeEEEEeecccccccccC
Q psy18231 240 PVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSR-SHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHLSNG 318 (540)
Q Consensus 240 ~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (540)
.+..+. |...|.++.|+++. ++++ .|+.|++||+.+. +. +.
T Consensus 93 ~~~~~~-~~~~v~~v~~~~~~--~~~~-~~~~i~i~d~~~~~~~--~~-------------------------------- 134 (355)
T 3vu4_A 93 DVSRIK-VDAPVKDLFLSREF--IVVS-YGDVISVFKFGNPWKR--IT-------------------------------- 134 (355)
T ss_dssp EEEEEE-CSSCEEEEEECSSE--EEEE-ETTEEEEEESSTTCCB--SS--------------------------------
T ss_pred EEEEEE-CCCceEEEEEcCCE--EEEE-EcCEEEEEECCCCcee--eE--------------------------------
Confidence 988886 67799999998764 4444 3789999999876 31 00
Q ss_pred ceeeEEEeeeecccccceeeeeeccceeEEEeecccceecccccccccccchhhhhhcccccEEEEEecCCeeEe--eeC
Q psy18231 319 LLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEARDSITSVHVSDHEILT--ASL 396 (540)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~~--~~~ 396 (540)
.+.. ....+++++..+++ |+.
T Consensus 135 ------------------------------------------------------~~~~---~~~~~~~s~~~la~~sg~~ 157 (355)
T 3vu4_A 135 ------------------------------------------------------DDIR---FGGVCEFSNGLLVYSNEFN 157 (355)
T ss_dssp ------------------------------------------------------CCEE---EEEEEEEETTEEEEEESSC
T ss_pred ------------------------------------------------------Eecc---CCceEEEEccEEEEeCCCc
Confidence 1111 22233444566666 689
Q ss_pred CCeEEEEeCCCCc----------------eEEeeeC--CceEEEEEecCCcEEEeecCCCe-EEEEeccccchhhhhc-c
Q psy18231 397 DCRIRRYDIRTGN----------------LVTDYVG--EPIVDACFTRDCQCILTCSTDEC-LRLFDKATGELLEEYK-G 456 (540)
Q Consensus 397 dg~i~iwd~~~~~----------------~~~~~~~--~~i~~~~~sp~~~~l~~~~~dg~-i~i~d~~~~~~~~~~~-~ 456 (540)
||.|++||+++++ .+..+.+ ..|.+++|+|+|++|++++.|++ |++||+++++.+.++. +
T Consensus 158 ~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~~~~~g 237 (355)
T 3vu4_A 158 LGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVREFRRG 237 (355)
T ss_dssp TTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCCEEEEEECT
T ss_pred CcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcC
Confidence 9999999999865 1445544 58999999999999999999998 9999999999999998 5
Q ss_pred -CcCCcceEEEEecCCCCeEEEeeCCCcEEEEEecCCccee--E------------------EEe-cccceeeeEEEEcC
Q psy18231 457 -HKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQIS--T------------------LIH-SVGKAVVNSLCSHP 514 (540)
Q Consensus 457 -~~~~v~~~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~--~------------------~~~-~~~~~~v~~l~~s~ 514 (540)
|...|.++ +|+|++++|++++.|++|++||+.++.... . +.. ..+......++|++
T Consensus 238 ~h~~~v~~~--~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 315 (355)
T 3vu4_A 238 LDRADVVDM--KWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKHVRGCKIAWIS 315 (355)
T ss_dssp TCCSCEEEE--EECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCCTTCCCCEEEESS
T ss_pred CCCCcEEEE--EECCCCCEEEEEECCCEEEEEEccCCCCcccccccceeeccccccccceeEEEeccCCCCCceEEEEeC
Confidence 89888888 899999999999999999999997653211 1 110 01122347799999
Q ss_pred CCcEEEeec-CCeeEEEEccccc
Q psy18231 515 TRKHIMSAC-GNNVKLWTAEEDY 536 (540)
Q Consensus 515 d~~~l~s~~-d~~i~iw~~~~~~ 536 (540)
|+++|++++ ||.+++|++..+.
T Consensus 316 d~~~l~~~~~dg~~~~~~~~~~~ 338 (355)
T 3vu4_A 316 ESSLVVVWPHTRMIETFKVVFDD 338 (355)
T ss_dssp SSEEEEEETTTTEEEEEEEEEET
T ss_pred CCCEEEEEeCCCeEEEEEEEcCC
Confidence 999999999 9999999987653
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-36 Score=290.37 Aligned_cols=241 Identities=12% Similarity=0.114 Sum_probs=201.0
Q ss_pred eecCCcceeEEEEeeCCCeEEEeeCCCeEEEEEcCCC--ceeEeccccCCceeEEEECCCCCEEEEecCCCcEEEEEecC
Q psy18231 202 YGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTG--QPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKS 279 (540)
Q Consensus 202 ~~~h~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~--~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 279 (540)
++.+.+.|++++|+|++++|++++.|+.|++||+.++ +.+..+.+|...|.+++|+|++++|++++.||+|++||+.+
T Consensus 7 ~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~ 86 (377)
T 3dwl_C 7 LHILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRP 86 (377)
T ss_dssp EEECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC----
T ss_pred EecCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCC
Confidence 4456789999999999999999999999999999988 77888999999999999999999999999999999999987
Q ss_pred CC-CCCcchhhhhHhhhhcCCceeEEEEeecccccccccCceeeEEEeeeecccccceeeeeeccceeEEEeecccceec
Q psy18231 280 RS-HHPIQVRCLNEALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQI 358 (540)
Q Consensus 280 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (540)
++ ..+
T Consensus 87 ~~~~~~-------------------------------------------------------------------------- 92 (377)
T 3dwl_C 87 DGTWKQ-------------------------------------------------------------------------- 92 (377)
T ss_dssp --CCCC--------------------------------------------------------------------------
T ss_pred CCceee--------------------------------------------------------------------------
Confidence 64 101
Q ss_pred ccccccccccchhhhhhcccccEEEEEecC--CeeEeeeCCCeEEEEeCCCCce---EEeee---CCceEEEEEecCCcE
Q psy18231 359 GDVTPISIHNSCFQALKEARDSITSVHVSD--HEILTASLDCRIRRYDIRTGNL---VTDYV---GEPIVDACFTRDCQC 430 (540)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~--~~l~~~~~dg~i~iwd~~~~~~---~~~~~---~~~i~~~~~sp~~~~ 430 (540)
...+..|...|.+++|+| +.+++++.|+.|++||+++++. ...+. ...|.+++|+|++++
T Consensus 93 ------------~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 160 (377)
T 3dwl_C 93 ------------TLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVL 160 (377)
T ss_dssp ------------EEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSE
T ss_pred ------------eeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCE
Confidence 114557889999999998 7899999999999999998863 55554 357999999999999
Q ss_pred EEeecCCCeEEEEecc------------------ccchhhhhccCcCCcceEEEEecCCCCeEEEeeCCCcEEEEEecCC
Q psy18231 431 ILTCSTDECLRLFDKA------------------TGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDS 492 (540)
Q Consensus 431 l~~~~~dg~i~i~d~~------------------~~~~~~~~~~~~~~v~~~~~~~s~~~~~l~s~s~dg~i~iwd~~~~ 492 (540)
|++++.|+.|++||+. .++++..+ +|...+.++ +|+|++++|++++.||.|++||+.++
T Consensus 161 l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~--~~sp~~~~l~~~~~d~~i~iwd~~~~ 237 (377)
T 3dwl_C 161 LAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAV--GFSPSGNALAYAGHDSSVTIAYPSAP 237 (377)
T ss_dssp EEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEE--EECTTSSCEEEEETTTEEC-CEECST
T ss_pred EEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEE--EECCCCCEEEEEeCCCcEEEEECCCC
Confidence 9999999999999985 45566677 888888888 89999999999999999999999999
Q ss_pred cc----eeEEEecccceeeeEEEEcCCCcEEEeecCCeeEEEEcc
Q psy18231 493 SQ----ISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAE 533 (540)
Q Consensus 493 ~~----~~~~~~~~~~~~v~~l~~s~d~~~l~s~~d~~i~iw~~~ 533 (540)
+. +..+. .|...|.+++|+|++++|++++++.+.+|+..
T Consensus 238 ~~~~~~~~~~~--~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~ 280 (377)
T 3dwl_C 238 EQPPRALITVK--LSQLPLRSLLWANESAIVAAGYNYSPILLQGN 280 (377)
T ss_dssp TSCEEECCCEE--CSSSCEEEEEEEETTEEEEEESSSSEEEECCC
T ss_pred CCcceeeEeec--CCCCceEEEEEcCCCCEEEEEcCCcEEEEEeC
Confidence 88 77777 89999999999999999999994444466654
|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-35 Score=310.27 Aligned_cols=290 Identities=14% Similarity=0.170 Sum_probs=235.7
Q ss_pred eeeeecCeEEEEeCCCCCEEEEeeCCCcEEEEcCC--CCeeEEEeecCCcceeEEEEeeC--CCeEEEeeCCCeEEEEEc
Q psy18231 160 ELFVLSGLMHTRFPVDGSYCLTCGSDKKIKLWNPY--RNLLLKTYGGHAHEVNDATAACD--SSQIASGASDKSVILWEV 235 (540)
Q Consensus 160 ~~~h~~~v~~v~~spdg~~lat~~~dg~i~iwd~~--~~~~~~~~~~h~~~v~~l~~sp~--~~~l~s~s~dg~i~iwd~ 235 (540)
..+|.++|++++|+|+|++|++|+.||+|+|||+. +++.+..+.+|.+.|++++|+|+ +++|++|+.||+|++||+
T Consensus 5 l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~ 84 (753)
T 3jro_A 5 ANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKE 84 (753)
T ss_dssp ---CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEEEE
T ss_pred cccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEEEC
Confidence 35799999999999999999999999999999987 56778889999999999999998 999999999999999999
Q ss_pred CCCc--eeEeccccCCceeEEEECCC--CCEEEEecCCCcEEEEEecCCCCCCcchhhhhHhhhhcCCceeEEEEeeccc
Q psy18231 236 TTGQ--PVRRWREHASKVTCVKFNED--SSVVISGSQDNTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKST 311 (540)
Q Consensus 236 ~~~~--~~~~~~~h~~~v~~~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (540)
.+++ .+..+.+|...|.+++|+|+ ++++++|+.||.|++||+++.......
T Consensus 85 ~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~------------------------- 139 (753)
T 3jro_A 85 ENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPI------------------------- 139 (753)
T ss_dssp ETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCE-------------------------
T ss_pred CCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCccee-------------------------
Confidence 9987 67778899999999999999 999999999999999999876421111
Q ss_pred ccccccCceeeEEEeeeecccccceeeeeeccceeEEEeecccceecccccccccccchhhhhhcccccEEEEEecC---
Q psy18231 312 KNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEARDSITSVHVSD--- 388 (540)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~--- 388 (540)
.+..|...|.+++|+|
T Consensus 140 -------------------------------------------------------------~~~~~~~~v~~l~~~p~~~ 158 (753)
T 3jro_A 140 -------------------------------------------------------------IIDAHAIGVNSASWAPATI 158 (753)
T ss_dssp -------------------------------------------------------------EEECCSSCEEEEEECCCC-
T ss_pred -------------------------------------------------------------EeecCCCceEEEEecCccc
Confidence 3346778888888876
Q ss_pred ------------CeeEeeeCCCeEEEEeCCCCc----eEEeeeC--CceEEEEEecC---CcEEEeecCCCeEEEEeccc
Q psy18231 389 ------------HEILTASLDCRIRRYDIRTGN----LVTDYVG--EPIVDACFTRD---CQCILTCSTDECLRLFDKAT 447 (540)
Q Consensus 389 ------------~~l~~~~~dg~i~iwd~~~~~----~~~~~~~--~~i~~~~~sp~---~~~l~~~~~dg~i~i~d~~~ 447 (540)
..+++++.||.|++||++++. ....+.+ ..|.+++|+|+ +++|++++.||.|++||+.+
T Consensus 159 ~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~ 238 (753)
T 3jro_A 159 EEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDN 238 (753)
T ss_dssp --------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESS
T ss_pred ccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCC
Confidence 579999999999999998773 3444443 57999999999 99999999999999999988
Q ss_pred cc-----hhhhhccCcCCcceEEEEecCCCCeEEEeeCCCcEEEEEecCCccee--------------------EEEe--
Q psy18231 448 GE-----LLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQIS--------------------TLIH-- 500 (540)
Q Consensus 448 ~~-----~~~~~~~~~~~v~~~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~--------------------~~~~-- 500 (540)
++ .+.....|...++.+ +|+|+|++|++|+.||.|++||+.++.... .+..
T Consensus 239 ~~~~~~~~~~~~~~~~~~v~~l--~~spdg~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~ 316 (753)
T 3jro_A 239 EQGPWKKTLLKEEKFPDVLWRA--SWSLSGNVLALSGGDNKVTLWKENLEGKWEPAGEVHQGGGGSGGGGATSKEFDGPC 316 (753)
T ss_dssp SSSCCBCCBSSSSCCSSCCCCE--EECTTTCCEEEECSSSCEECCBCCSSSCCBCCCCBC--------------------
T ss_pred CCCcceeEEeccCCCCCceEEE--EEcCCCCEEEEEcCCCEEEEEecCCCCCcccccccccccCCCCCCccccccccCcC
Confidence 64 444556688888888 899999999999999999999987422100 0000
Q ss_pred ------------------------cccceeeeEEEEcCCCcEEEeec--CCeeEEEEcccccC
Q psy18231 501 ------------------------SVGKAVVNSLCSHPTRKHIMSAC--GNNVKLWTAEEDYG 537 (540)
Q Consensus 501 ------------------------~~~~~~v~~l~~s~d~~~l~s~~--d~~i~iw~~~~~~~ 537 (540)
.....++..+.|++||++|+.+. ...+++..+...+.
T Consensus 317 ~~~~~~~~~~~~~~~~~~k~i~~~~rl~s~~~~~~fs~dg~lL~~~~~~~~~~~~~~~ps~~~ 379 (753)
T 3jro_A 317 QNEIDLLFSECNDEIDNAKLIMKERRFTASYTFAKFSTGSMLLTKDIVGKSGVSIKRLPTELQ 379 (753)
T ss_dssp --------------CCSHHHHHHTTTCCSCCCCCCBCTTSCBCEECSSSTTSEECCCCCCCCC
T ss_pred CchhhhhhcccccchHHHHHHHHHhhccCCcceeEeCCCCeeeeccCCCccceEEeecccccc
Confidence 00112356688999999998777 34577777665543
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
Probab=100.00 E-value=5.9e-35 Score=281.01 Aligned_cols=243 Identities=16% Similarity=0.177 Sum_probs=215.6
Q ss_pred eecCCcceeEEEEeeCCCeEEEeeCCCeEEEEEcCCCc--eeEeccccCCceeEEEECCCCCEEEEecCCCcEEEEEecC
Q psy18231 202 YGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQ--PVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKS 279 (540)
Q Consensus 202 ~~~h~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~--~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 279 (540)
+..|.++|++++|+|++++|++++.|+.|++||+.+++ .+..+.+|...|.+++|+|++++|++++.||.|++||+++
T Consensus 4 ~~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~ 83 (372)
T 1k8k_C 4 HSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKG 83 (372)
T ss_dssp EESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEET
T ss_pred ecccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCC
Confidence 45589999999999999999999999999999999987 8888999999999999999999999999999999999976
Q ss_pred CCCCCcchhhhhHhhhhcCCceeEEEEeecccccccccCceeeEEEeeeecccccceeeeeeccceeEEEeecccceecc
Q psy18231 280 RSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIG 359 (540)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (540)
++....
T Consensus 84 ~~~~~~-------------------------------------------------------------------------- 89 (372)
T 1k8k_C 84 RTWKPT-------------------------------------------------------------------------- 89 (372)
T ss_dssp TEEEEE--------------------------------------------------------------------------
T ss_pred Ceeeee--------------------------------------------------------------------------
Confidence 541000
Q ss_pred cccccccccchhhhhhcccccEEEEEecC--CeeEeeeCCCeEEEEeCCCCce---EEeee---CCceEEEEEecCCcEE
Q psy18231 360 DVTPISIHNSCFQALKEARDSITSVHVSD--HEILTASLDCRIRRYDIRTGNL---VTDYV---GEPIVDACFTRDCQCI 431 (540)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~v~~l~~~~--~~l~~~~~dg~i~iwd~~~~~~---~~~~~---~~~i~~~~~sp~~~~l 431 (540)
..+..|...|.+++|+| +++++++.|+.|++||++.++. ...+. ...|.+++|+|++++|
T Consensus 90 ------------~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 157 (372)
T 1k8k_C 90 ------------LVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLL 157 (372)
T ss_dssp ------------EECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEE
T ss_pred ------------EEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEE
Confidence 02346788999999998 7899999999999999998763 23332 3679999999999999
Q ss_pred EeecCCCeEEEEec------------------cccchhhhhccCcCCcceEEEEecCCCCeEEEeeCCCcEEEEEecCCc
Q psy18231 432 LTCSTDECLRLFDK------------------ATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSS 493 (540)
Q Consensus 432 ~~~~~dg~i~i~d~------------------~~~~~~~~~~~~~~~v~~~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~ 493 (540)
++++.||.|++||+ ..++.+..+..|...+..+ +|+|++++|++++.||.|++||+.+++
T Consensus 158 ~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~~~l~~~~~d~~i~i~d~~~~~ 235 (372)
T 1k8k_C 158 AAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGV--CFSANGSRVAWVSHDSTVCLADADKKM 235 (372)
T ss_dssp EEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEE--EECSSSSEEEEEETTTEEEEEEGGGTT
T ss_pred EEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEE--EECCCCCEEEEEeCCCEEEEEECCCCc
Confidence 99999999999995 3667788888899888887 899999999999999999999999999
Q ss_pred ceeEEEecccceeeeEEEEcCCCcEEEeecCCeeEEEEccc
Q psy18231 494 QISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEE 534 (540)
Q Consensus 494 ~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~d~~i~iw~~~~ 534 (540)
.+..+. .|...|.+++|+|++++|+++.|+.|++|++.+
T Consensus 236 ~~~~~~--~~~~~v~~~~~~~~~~~l~~~~d~~i~i~~~~~ 274 (372)
T 1k8k_C 236 AVATLA--SETLPLLAVTFITESSLVAAGHDCFPVLFTYDS 274 (372)
T ss_dssp EEEEEE--CSSCCEEEEEEEETTEEEEEETTSSCEEEEEET
T ss_pred eeEEEc--cCCCCeEEEEEecCCCEEEEEeCCeEEEEEccC
Confidence 999998 899999999999999999888899999999987
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-35 Score=288.40 Aligned_cols=270 Identities=13% Similarity=0.137 Sum_probs=219.9
Q ss_pred cceecc-ccchhhhhhcccccceeeeecccc---c-----ceeeeeecCeEEEEeCCCCCEEEEeeCCCcEEEEcCC---
Q psy18231 127 PLLFSL-PRTITRILYELPKEWSIRVYRPLT---V-----NRELFVLSGLMHTRFPVDGSYCLTCGSDKKIKLWNPY--- 194 (540)
Q Consensus 127 ~~~~s~-~~~~~~~~~~~~~~~~i~~~~~~~---~-----~~~~~h~~~v~~v~~spdg~~lat~~~dg~i~iwd~~--- 194 (540)
.+.|++ + ...+++++.+++|++|+..+ . .....|.+.|.+++|+|++++|++|+.||+|++||+.
T Consensus 68 ~~~~s~~~---~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~ 144 (437)
T 3gre_A 68 SSAVSPGE---TPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTYDCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQ 144 (437)
T ss_dssp EEEEECSS---SCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEE
T ss_pred EEEECCCC---CCEEEEecCCceEEEeECcccccCcccceeeeccCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEecccc
Confidence 344555 3 45677889999999999866 2 2344699999999999999999999999999999984
Q ss_pred CCeeEEEeec------------CCcceeEEE--EeeCCCeEEEeeCCCeEEEEEcCCCceeEeccc--cCCceeEEEECC
Q psy18231 195 RNLLLKTYGG------------HAHEVNDAT--AACDSSQIASGASDKSVILWEVTTGQPVRRWRE--HASKVTCVKFNE 258 (540)
Q Consensus 195 ~~~~~~~~~~------------h~~~v~~l~--~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~--h~~~v~~~~~~~ 258 (540)
+++.+..+.+ +...+.++. +++++++|++++.|+.|++||+++++.+..+.. |.+.|.+++|+|
T Consensus 145 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~ 224 (437)
T 3gre_A 145 QESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDE 224 (437)
T ss_dssp ETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECT
T ss_pred CCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECC
Confidence 5544443332 455666666 557899999999999999999999999999988 899999999999
Q ss_pred CCCEEEEecCCCcEEEEEecCCCCCCcchhhhhHhhhhcCCceeEEEEeecccccccccCceeeEEEeeeecccccceee
Q psy18231 259 DSSVVISGSQDNTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSG 338 (540)
Q Consensus 259 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (540)
++++|++|+.||.|++||+++++.
T Consensus 225 ~~~~l~s~~~dg~i~iwd~~~~~~-------------------------------------------------------- 248 (437)
T 3gre_A 225 ECCVLILGTTRGIIDIWDIRFNVL-------------------------------------------------------- 248 (437)
T ss_dssp TSCEEEEEETTSCEEEEETTTTEE--------------------------------------------------------
T ss_pred CCCEEEEEcCCCeEEEEEcCCccE--------------------------------------------------------
Confidence 999999999999999999987541
Q ss_pred eeeccceeEEEeecccceecccccccccccchhhhhh-cccccEEEEEecC------CeeEeeeCCCeEEEEeCCCCceE
Q psy18231 339 VLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALK-EARDSITSVHVSD------HEILTASLDCRIRRYDIRTGNLV 411 (540)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~l~~~~------~~l~~~~~dg~i~iwd~~~~~~~ 411 (540)
+..+. .|...|.+++++| .++++++.||.|++||+++++.+
T Consensus 249 --------------------------------~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~ 296 (437)
T 3gre_A 249 --------------------------------IRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQ 296 (437)
T ss_dssp --------------------------------EEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEE
T ss_pred --------------------------------EEEEecCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEE
Confidence 01222 5667899997665 38999999999999999999887
Q ss_pred EeeeC----------------------------CceEEEEEecCCcEEEeecCCCeEEEEeccccchhhhhcc-------
Q psy18231 412 TDYVG----------------------------EPIVDACFTRDCQCILTCSTDECLRLFDKATGELLEEYKG------- 456 (540)
Q Consensus 412 ~~~~~----------------------------~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~------- 456 (540)
..+.+ ..|.+++|+ ++++|++++.|+.|++||+.+++.+..+.+
T Consensus 297 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~ 375 (437)
T 3gre_A 297 YAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEATSSIVMFSLNELSSSKAVISPSRFSDV 375 (437)
T ss_dssp EEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETTCGGGCEEEECC--CCCE
T ss_pred EEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEEecCCCCeEEEEECCCcccceEEecccccCce
Confidence 77653 238889999 789999999999999999999987776665
Q ss_pred ------------------------------CcCCcceEEEEecCCCCeEEEeeCCCcEEEEE
Q psy18231 457 ------------------------------HKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQ 488 (540)
Q Consensus 457 ------------------------------~~~~v~~~~~~~s~~~~~l~s~s~dg~i~iwd 488 (540)
|...|.++.+...+++.+|++|+.||.|+||+
T Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~~~l~s~~~dG~I~iw~ 437 (437)
T 3gre_A 376 FIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSISTCEVDETPLLVACDNSGLIGIFQ 437 (437)
T ss_dssp EEEEEEETTEEEEEEECC-------------CCCEEEEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred EEEEEeecceEEEEEecccccccccCcccccccceeeEeeeccCCceEEEEEcCCceEEEeC
Confidence 77888888444333478999999999999995
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=5.4e-35 Score=287.17 Aligned_cols=274 Identities=19% Similarity=0.329 Sum_probs=223.6
Q ss_pred hhhhhcccccceeeeecccccce---eeeeecCeEEEEeCCCCCEEEEeeCCCcEEEEcCCCCeeEEEeecCCcceeEEE
Q psy18231 137 TRILYELPKEWSIRVYRPLTVNR---ELFVLSGLMHTRFPVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDAT 213 (540)
Q Consensus 137 ~~~~~~~~~~~~i~~~~~~~~~~---~~~h~~~v~~v~~spdg~~lat~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~ 213 (540)
...++.++.++.|++|+..+... ..+|.+.|.+++| ++++|++|+.||+|++||+.+++.+..+.+|...|.+++
T Consensus 143 ~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~ 220 (435)
T 1p22_A 143 DQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLR 220 (435)
T ss_dssp SSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEEEEECCCCSCEEEEE
T ss_pred CCEEEEEeCCCeEEEEeCCCCeEEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCcEEEEE
Confidence 34567788999999999877542 3469999999999 788999999999999999999999999999999999999
Q ss_pred EeeCCCeEEEeeCCCeEEEEEcCCCcee---EeccccCCceeEEEECCCCCEEEEecCCCcEEEEEecCCCCCCcchhhh
Q psy18231 214 AACDSSQIASGASDKSVILWEVTTGQPV---RRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQVRCL 290 (540)
Q Consensus 214 ~sp~~~~l~s~s~dg~i~iwd~~~~~~~---~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~ 290 (540)
|+ +.++++++.||.|++||+.+++.. ..+.+|...|.+++| +++++++++.||.|++||+++++.
T Consensus 221 ~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~vwd~~~~~~-------- 288 (435)
T 1p22_A 221 FN--NGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVWNTSTCEF-------- 288 (435)
T ss_dssp CC--TTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTTCCE--------
T ss_pred Ec--CCEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCcCcE--------
Confidence 97 469999999999999999988765 667899999999999 678999999999999999987651
Q ss_pred hHhhhhcCCceeEEEEeecccccccccCceeeEEEeeeecccccceeeeeeccceeEEEeecccceecccccccccccch
Q psy18231 291 NEALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSC 370 (540)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (540)
T Consensus 289 -------------------------------------------------------------------------------- 288 (435)
T 1p22_A 289 -------------------------------------------------------------------------------- 288 (435)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhhhcccccEEEEEecCCeeEeeeCCCeEEEEeCCCCceEEeeeC--CceEEEEEecCCcEEEeecCCCeEEEEecccc
Q psy18231 371 FQALKEARDSITSVHVSDHEILTASLDCRIRRYDIRTGNLVTDYVG--EPIVDACFTRDCQCILTCSTDECLRLFDKATG 448 (540)
Q Consensus 371 ~~~~~~~~~~v~~l~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~--~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~ 448 (540)
+..+.+|...|.++.++++.+++++.||.|++||+++++.+..+.+ ..|.+++| ++++|++|+.||.|++||+.++
T Consensus 289 ~~~~~~~~~~v~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~--~~~~l~sg~~dg~i~vwd~~~~ 366 (435)
T 1p22_A 289 VRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF--DNKRIVSGAYDGKIKVWDLVAA 366 (435)
T ss_dssp EEEEECCSSCEEEEEEETTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEEHHHH
T ss_pred EEEEcCCCCcEEEEEeCCCEEEEEeCCCeEEEEECCCCCEEEEEeCCcCcEEEEEe--cCCEEEEEeCCCcEEEEECCCC
Confidence 1144578889999999999999999999999999999999988875 46888888 7899999999999999999877
Q ss_pred c---------hhhhhccCcCCcceEEEEecCCCCeEEEeeCCCcEEEEEecCCcceeEEEecccceeeeEEEEc
Q psy18231 449 E---------LLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSH 513 (540)
Q Consensus 449 ~---------~~~~~~~~~~~v~~~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s 513 (540)
+ .+..+.+|...|.++ +| ++++|++|+.||+|++||+.+........ ...+..++.|.
T Consensus 367 ~~~~~~~~~~~~~~~~~h~~~v~~l--~~--~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~---~~~~~~~~~~~ 433 (435)
T 1p22_A 367 LDPRAPAGTLCLRTLVEHSGRVFRL--QF--DEFQIVSSSHDDTILIWDFLNDPAAQAEP---PRSPSRTYTYI 433 (435)
T ss_dssp TSTTSCTTTTEEEEECCCSSCCCCE--EE--CSSCEEECCSSSEEEEEC-------------------------
T ss_pred CCccccccchheeeccCCCCCeEEE--Ee--CCCEEEEEeCCCEEEEEECCCCCCcccCC---CCCCccceeee
Confidence 6 677888999999988 56 78899999999999999998876655543 33445555554
|
| >2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-35 Score=284.90 Aligned_cols=254 Identities=9% Similarity=0.039 Sum_probs=207.0
Q ss_pred ecCeEEEEeCCCCCEEEEeeCCCcEEEEcCCCCeeEEEeecCCcceeEEEEeeCCCeEEEeeCCCeEEEEEcCCCceeEe
Q psy18231 164 LSGLMHTRFPVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPVRR 243 (540)
Q Consensus 164 ~~~v~~v~~spdg~~lat~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~ 243 (540)
...|.+++|||||+++|+++.|++|+ |...++ .+++|...|.+++|+|+| .++.+.+|+. +....
T Consensus 15 ~~~v~sv~~SpDG~~iASas~D~TV~--d~~~~~---~l~gh~~~v~~V~FsPdg-------~~~~~~~~~~---~~~~~ 79 (588)
T 2j04_A 15 EDWKNNLTWARDGTLYLTTFPDISIG--QPKYAK---DINCNSKNLFHVKEFPLE-------FENKLDFELA---QQNGL 79 (588)
T ss_dssp SSSSCCEEECTTSCEEEECSSSEEEE--EECCCS---CCSSBGGGTEEEEEECCC-------CCCTTTTSCC---CSSCS
T ss_pred hccEEEEEECCCCCEEEEEcCCceee--cccccc---eecCCCccEEEEEECCCC-------CcceEEEEeC---CCceE
Confidence 47899999999999999999999999 765554 447999999999999998 4555555554 32223
Q ss_pred cc-ccCCceeEEEECCCCCEEEEecCCCcEEEEEecCCCCCCcchhhhhHhhhhcCCceeEEEEeecccccccccCceee
Q psy18231 244 WR-EHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHLSNGLLTK 322 (540)
Q Consensus 244 ~~-~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (540)
+. .|...|.+++|+|+|.+|++++.||.|++||... ..
T Consensus 80 ~~~~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~----~l------------------------------------- 118 (588)
T 2j04_A 80 LNSQPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK----ML------------------------------------- 118 (588)
T ss_dssp STTSCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE----EE-------------------------------------
T ss_pred eecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc----ee-------------------------------------
Confidence 33 5688999999999999999999999999999432 00
Q ss_pred EEEeeeecccccceeeeeeccceeEEEeecccceecccccccccccchhhhhhccc-----ccEEEEEecC--CeeEeee
Q psy18231 323 LVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEAR-----DSITSVHVSD--HEILTAS 395 (540)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~v~~l~~~~--~~l~~~~ 395 (540)
..+. |. ..+.+++|+| ++|++|+
T Consensus 119 -------------------------------------------------~~l~-~~~~~~~~sv~svafSPDG~~LAsgs 148 (588)
T 2j04_A 119 -------------------------------------------------TNLD-SKGNLSSRTYHCFEWNPIESSIVVGN 148 (588)
T ss_dssp -------------------------------------------------EECC-CSSCSTTTCEEEEEECSSSSCEEEEE
T ss_pred -------------------------------------------------eecc-CCCccccccEEEEEEcCCCCEEEEEc
Confidence 0122 33 3589999999 9999999
Q ss_pred CCCeEEEEeCCCCce-------EEeee------CCceEEEEEecCCcEEEeecCCCeEEEEeccccchh---hhh-ccCc
Q psy18231 396 LDCRIRRYDIRTGNL-------VTDYV------GEPIVDACFTRDCQCILTCSTDECLRLFDKATGELL---EEY-KGHK 458 (540)
Q Consensus 396 ~dg~i~iwd~~~~~~-------~~~~~------~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~---~~~-~~~~ 458 (540)
.||+|++||+.+++. +..+. ...|.+++|+|+| +++++.|+.|++||+..++.. .++ .+|.
T Consensus 149 ~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~ 226 (588)
T 2j04_A 149 EDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQPVSRMIQNASR 226 (588)
T ss_dssp TTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSSCCCEEEEECCCS
T ss_pred CCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCccccceeeeccccc
Confidence 999999999998863 45553 1479999999999 888899999999999887742 456 4788
Q ss_pred CCcceEEEEecCCCCeEEEeeCCCcEEEEEecCCcceeEEEecccceeeeEEEE--cCCCcEEEeec-CCeeEEEEcc
Q psy18231 459 SGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCS--HPTRKHIMSAC-GNNVKLWTAE 533 (540)
Q Consensus 459 ~~v~~~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~--s~d~~~l~s~~-d~~i~iw~~~ 533 (540)
..|..+ +|+ |+.||+++ +++|++||+.+++...... +|.+.|.+++| +||+..|++++ ||+ ++|..+
T Consensus 227 ~~V~sv--aFs--g~~LASa~-~~tIkLWd~~~~~~~~~~~--gh~~~V~~va~~~s~d~~~La~a~edG~-klw~~d 296 (588)
T 2j04_A 227 RKITDL--KIV--DYKVVLTC-PGYVHKIDLKNYSISSLKT--GSLENFHIIPLNHEKESTILLMSNKTSY-KVLLED 296 (588)
T ss_dssp SCCCCE--EEE--TTEEEEEC-SSEEEEEETTTTEEEEEEC--SCCSCCCEEEETTCSSCEEEEECSSCEE-EEEESS
T ss_pred CcEEEE--EEE--CCEEEEEe-CCeEEEEECCCCeEEEEEc--CCCceEEEEEeeeCCCCCEEEEEcCCCC-EEEeec
Confidence 889888 677 68899997 6999999988777644444 79999999999 99999999999 999 999874
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-34 Score=268.57 Aligned_cols=244 Identities=20% Similarity=0.288 Sum_probs=214.4
Q ss_pred CeeEEEeecCCcceeEEEEeeCCCeEEEeeCCCeEEEEEcCCCceeEeccccCCceeEEEECCCCCEEEEecCCCcEEEE
Q psy18231 196 NLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMW 275 (540)
Q Consensus 196 ~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iw 275 (540)
.+....+.+|.+.|++++| |++++|++++.||.|++||+.+++....+..|...|.+++|+|++++|++++.||.|++|
T Consensus 8 ~~~~~~l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~ 86 (313)
T 3odt_A 8 YQLSATLKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMINGV 86 (313)
T ss_dssp CEEEEEECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSEEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEEEE
T ss_pred HHHHHHhhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEEEeecCCccEEEEEECCCCCEEEEecCCCeEEEE
Confidence 3778889999999999999 999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCCCCCCcchhhhhHhhhhcCCceeEEEEeecccccccccCceeeEEEeeeecccccceeeeeeccceeEEEeecccc
Q psy18231 276 DVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGS 355 (540)
Q Consensus 276 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (540)
++.......
T Consensus 87 ~~~~~~~~~----------------------------------------------------------------------- 95 (313)
T 3odt_A 87 PLFATSGED----------------------------------------------------------------------- 95 (313)
T ss_dssp ETTCCTTSC-----------------------------------------------------------------------
T ss_pred EeeecCCCC-----------------------------------------------------------------------
Confidence 997654110
Q ss_pred eecccccccccccchhhhhhcccccEEEEEecCCeeEeeeCCCeEEEEeCCCCceEEeee--CCceEEEEEec-CCcEEE
Q psy18231 356 TQIGDVTPISIHNSCFQALKEARDSITSVHVSDHEILTASLDCRIRRYDIRTGNLVTDYV--GEPIVDACFTR-DCQCIL 432 (540)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~--~~~i~~~~~sp-~~~~l~ 432 (540)
....+..|...|.+++|+++.+++++.||.|++|| .++....+. ...+.+++|+| ++++++
T Consensus 96 --------------~~~~~~~~~~~i~~~~~~~~~l~~~~~d~~i~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~ 159 (313)
T 3odt_A 96 --------------PLYTLIGHQGNVCSLSFQDGVVISGSWDKTAKVWK--EGSLVYNLQAHNASVWDAKVVSFSENKFL 159 (313)
T ss_dssp --------------C-CEECCCSSCEEEEEEETTEEEEEETTSEEEEEE--TTEEEEEEECCSSCEEEEEEEETTTTEEE
T ss_pred --------------cccchhhcccCEEEEEecCCEEEEEeCCCCEEEEc--CCcEEEecccCCCceeEEEEccCCCCEEE
Confidence 12245678899999999889999999999999999 555555554 46899999998 999999
Q ss_pred eecCCCeEEEEeccccchhhhhcc-CcCCcceEEEEecCCCCeEEEeeCCCcEEEEEecCCcceeEEEecccceeeeEEE
Q psy18231 433 TCSTDECLRLFDKATGELLEEYKG-HKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLC 511 (540)
Q Consensus 433 ~~~~dg~i~i~d~~~~~~~~~~~~-~~~~v~~~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~ 511 (540)
+++.|+.|++|| ..+.+..+.. |...+..+ +|+|++. +++++.||.|++||+.+++.+..+. .|...|++++
T Consensus 160 ~~~~d~~i~i~d--~~~~~~~~~~~~~~~i~~~--~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~~--~~~~~i~~~~ 232 (313)
T 3odt_A 160 TASADKTIKLWQ--NDKVIKTFSGIHNDVVRHL--AVVDDGH-FISCSNDGLIKLVDMHTGDVLRTYE--GHESFVYCIK 232 (313)
T ss_dssp EEETTSCEEEEE--TTEEEEEECSSCSSCEEEE--EEEETTE-EEEEETTSEEEEEETTTCCEEEEEE--CCSSCEEEEE
T ss_pred EEECCCCEEEEe--cCceEEEEeccCcccEEEE--EEcCCCe-EEEccCCCeEEEEECCchhhhhhhh--cCCceEEEEE
Confidence 999999999999 4455566666 77788777 8899988 9999999999999999999999998 8999999999
Q ss_pred EcCCCcEEEeec-CCeeEEEEcccc
Q psy18231 512 SHPTRKHIMSAC-GNNVKLWTAEED 535 (540)
Q Consensus 512 ~s~d~~~l~s~~-d~~i~iw~~~~~ 535 (540)
|+|++ .|++++ |+.|++||+.++
T Consensus 233 ~~~~~-~l~~~~~dg~v~iwd~~~~ 256 (313)
T 3odt_A 233 LLPNG-DIVSCGEDRTVRIWSKENG 256 (313)
T ss_dssp ECTTS-CEEEEETTSEEEEECTTTC
T ss_pred EecCC-CEEEEecCCEEEEEECCCC
Confidence 99999 577777 999999999765
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-35 Score=285.83 Aligned_cols=270 Identities=11% Similarity=0.135 Sum_probs=223.1
Q ss_pred ccchhhhhhcccccceeeeecccccc-------eeeeeecCeEEEEeCC-CCCEEEEeeCCCcEEEEcCCCC-------e
Q psy18231 133 PRTITRILYELPKEWSIRVYRPLTVN-------RELFVLSGLMHTRFPV-DGSYCLTCGSDKKIKLWNPYRN-------L 197 (540)
Q Consensus 133 ~~~~~~~~~~~~~~~~i~~~~~~~~~-------~~~~h~~~v~~v~~sp-dg~~lat~~~dg~i~iwd~~~~-------~ 197 (540)
++....+++..+.++.|++|+..... ...+|.+.|++++|+| ++++|++|+.||+|++||+.++ +
T Consensus 43 ~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~ 122 (402)
T 2aq5_A 43 NPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLRE 122 (402)
T ss_dssp CSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCS
T ss_pred CCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCC
Confidence 44445666677889999999975432 2456999999999999 9999999999999999999987 6
Q ss_pred eEEEeecCCcceeEEEEeeCC-CeEEEeeCCCeEEEEEcCCCceeEec--cccCCceeEEEECCCCCEEEEecCCCcEEE
Q psy18231 198 LLKTYGGHAHEVNDATAACDS-SQIASGASDKSVILWEVTTGQPVRRW--REHASKVTCVKFNEDSSVVISGSQDNTVMM 274 (540)
Q Consensus 198 ~~~~~~~h~~~v~~l~~sp~~-~~l~s~s~dg~i~iwd~~~~~~~~~~--~~h~~~v~~~~~~~~~~~l~s~~~dg~i~i 274 (540)
.+..+.+|...|.+++|+|++ ++|++++.|++|++||+++++.+..+ ..|...|.+++|+|++++|++++.||.|++
T Consensus 123 ~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i 202 (402)
T 2aq5_A 123 PVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRV 202 (402)
T ss_dssp CSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEETTSEEEE
T ss_pred ceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEEEEecCCcEEE
Confidence 788899999999999999998 69999999999999999999999988 889999999999999999999999999999
Q ss_pred EEecCCCCCCcchhhhhHhhhhcCCceeEEEEeecccccccccCceeeEEEeeeecccccceeeeeeccceeEEEeeccc
Q psy18231 275 WDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLG 354 (540)
Q Consensus 275 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (540)
||+++++.
T Consensus 203 wd~~~~~~------------------------------------------------------------------------ 210 (402)
T 2aq5_A 203 IEPRKGTV------------------------------------------------------------------------ 210 (402)
T ss_dssp EETTTTEE------------------------------------------------------------------------
T ss_pred EeCCCCce------------------------------------------------------------------------
Confidence 99987641
Q ss_pred ceecccccccccccchhhhh-hccccc-EEEEEecC--CeeEee---eCCCeEEEEeCCCCce-E--Eeee-CCceEEEE
Q psy18231 355 STQIGDVTPISIHNSCFQAL-KEARDS-ITSVHVSD--HEILTA---SLDCRIRRYDIRTGNL-V--TDYV-GEPIVDAC 423 (540)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~-~~~~~~-v~~l~~~~--~~l~~~---~~dg~i~iwd~~~~~~-~--~~~~-~~~i~~~~ 423 (540)
+..+ ..|.+. +.++.|+| .+++++ +.|+.|++||+++++. + ..+. ...+.+++
T Consensus 211 ----------------~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~ 274 (402)
T 2aq5_A 211 ----------------VAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPF 274 (402)
T ss_dssp ----------------EEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEEEE
T ss_pred ----------------eeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEeccCCCceeEEE
Confidence 0022 344444 78889988 567777 6899999999998764 2 2222 35799999
Q ss_pred EecCCcEEE-eecCCCeEEEEeccccch-hhhhccC--cCCcceEEEEecCCCCeEEEeeCCCcEEEEEecCCcc
Q psy18231 424 FTRDCQCIL-TCSTDECLRLFDKATGEL-LEEYKGH--KSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQ 494 (540)
Q Consensus 424 ~sp~~~~l~-~~~~dg~i~i~d~~~~~~-~~~~~~~--~~~v~~~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~ 494 (540)
|+|++++|+ +++.||.|++||+.+++. +..+..| ...+..+ +|+|++.++++ .++.+++|++.+++.
T Consensus 275 ~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~~~~~v~~~--~~sp~~~~~~s--~~~~~~~~~l~~~~~ 345 (402)
T 2aq5_A 275 FDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFSSKESQRGM--GYMPKRGLEVN--KCEIARFYKLHERKC 345 (402)
T ss_dssp EETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEECCSSCCSEE--EECCGGGSCGG--GTEEEEEEEEETTEE
T ss_pred EcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccccCCcccce--EEeccccccee--cceeEEEEEcCCCcE
Confidence 999999986 456799999999998874 5555444 4778877 89999988775 466999999988754
|
| >2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-35 Score=284.22 Aligned_cols=292 Identities=10% Similarity=0.060 Sum_probs=226.8
Q ss_pred CCcceeccccchhhhhhcccccceeeeecccccceeeeeecCeEEEEeCCCCCEEEEeeCCCcEEEEcCCCCeeEEEeec
Q psy18231 125 THPLLFSLPRTITRILYELPKEWSIRVYRPLTVNRELFVLSGLMHTRFPVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGG 204 (540)
Q Consensus 125 ~~~~~~s~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~h~~~v~~v~~spdg~~lat~~~dg~i~iwd~~~~~~~~~~~~ 204 (540)
...+.++++ ..++++.+.|.+|+ +........+|...|.+++|+|+| .++.+.+|+.+.. .+..+ .
T Consensus 18 v~sv~~SpD---G~~iASas~D~TV~--d~~~~~~l~gh~~~v~~V~FsPdg-------~~~~~~~~~~~~~-~~~~~-~ 83 (588)
T 2j04_A 18 KNNLTWARD---GTLYLTTFPDISIG--QPKYAKDINCNSKNLFHVKEFPLE-------FENKLDFELAQQN-GLLNS-Q 83 (588)
T ss_dssp SCCEEECTT---SCEEEECSSSEEEE--EECCCSCCSSBGGGTEEEEEECCC-------CCCTTTTSCCCSS-CSSTT-S
T ss_pred EEEEEECCC---CCEEEEEcCCceee--cccccceecCCCccEEEEEECCCC-------CcceEEEEeCCCc-eEeec-C
Confidence 456677777 46777889999999 555555556899999999999999 4666666664322 22233 4
Q ss_pred CCcceeEEEEeeCCCeEEEeeCCCeEEEEEcCCCceeEeccccCC-----ceeEEEECCCCCEEEEecCCCcEEEEEecC
Q psy18231 205 HAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPVRRWREHAS-----KVTCVKFNEDSSVVISGSQDNTVMMWDVKS 279 (540)
Q Consensus 205 h~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~-----~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 279 (540)
|...|.+++|||+|++||+++.||+|++||.+. ++..+. |.. .|.+++|+|||++|++|+.||+|++||+.+
T Consensus 84 ~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~ 160 (588)
T 2j04_A 84 PVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIRK 160 (588)
T ss_dssp CSCCEEEEEECSSSSCEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECCC
T ss_pred CCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECCC
Confidence 688999999999999999999999999999644 666666 665 499999999999999999999999999987
Q ss_pred CCCCCcchhhhhHhhhhcCCceeEEEEeecccccccccCceeeEEEeeeecccccceeeeeeccceeEEEeecccceecc
Q psy18231 280 RSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIG 359 (540)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (540)
+.......
T Consensus 161 ~~l~~~~~------------------------------------------------------------------------ 168 (588)
T 2j04_A 161 NSENTPEF------------------------------------------------------------------------ 168 (588)
T ss_dssp CTTTCCCC------------------------------------------------------------------------
T ss_pred Cccccccc------------------------------------------------------------------------
Confidence 64100000
Q ss_pred cccccccccchhhh----hhcccccEEEEEecCCeeEeeeCCCeEEEEeCCCCce---EEeee---CCceEEEEEecCCc
Q psy18231 360 DVTPISIHNSCFQA----LKEARDSITSVHVSDHEILTASLDCRIRRYDIRTGNL---VTDYV---GEPIVDACFTRDCQ 429 (540)
Q Consensus 360 ~~~~~~~~~~~~~~----~~~~~~~v~~l~~~~~~l~~~~~dg~i~iwd~~~~~~---~~~~~---~~~i~~~~~sp~~~ 429 (540)
-.+.. ..+|...|.+++|+|+-+++++.|+++++||+.+++. ..++. ...|.+++|+ |+
T Consensus 169 ---------i~l~ti~~~~~gh~~~V~sVawSPdgLaass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaFs--g~ 237 (588)
T 2j04_A 169 ---------YFESSIRLSDAGSKDWVTHIVWYEDVLVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLKIV--DY 237 (588)
T ss_dssp ---------EEEEEEECSCTTCCCCEEEEEEETTEEEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEEEE--TT
T ss_pred ---------eeeeeeecccccccccEEEEEEcCCcEEEEeCCCeEEEEECCCCccccceeeecccccCcEEEEEEE--CC
Confidence 00002 2568889999999994499999999999999998774 23442 3579999999 68
Q ss_pred EEEeecCCCeEEEEeccccchhhhhccCcCCcceEEEEe--cCCCCeEEEeeCCCcEEEEEecC----------------
Q psy18231 430 CILTCSTDECLRLFDKATGELLEEYKGHKSGDFRIECCL--DSKDSQIFCGSSDGKIYKWQLVD---------------- 491 (540)
Q Consensus 430 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~--s~~~~~l~s~s~dg~i~iwd~~~---------------- 491 (540)
.||+++ +++|++||+.+++......+|...++.+ +| +|++..|+++++||+ ++|....
T Consensus 238 ~LASa~-~~tIkLWd~~~~~~~~~~~gh~~~V~~v--a~~~s~d~~~La~a~edG~-klw~~d~~~~spd~~l~a~~d~~ 313 (588)
T 2j04_A 238 KVVLTC-PGYVHKIDLKNYSISSLKTGSLENFHII--PLNHEKESTILLMSNKTSY-KVLLEDELHVTADNIIAPYLEKK 313 (588)
T ss_dssp EEEEEC-SSEEEEEETTTTEEEEEECSCCSCCCEE--EETTCSSCEEEEECSSCEE-EEEESSSEEEECCCSSHHHHHHH
T ss_pred EEEEEe-CCeEEEEECCCCeEEEEEcCCCceEEEE--EeeeCCCCCEEEEEcCCCC-EEEeeccEEECCCceEEEEcCCE
Confidence 888887 6999999999887743343799999998 88 999999999999999 9998631
Q ss_pred -------CcceeEEEecccceeeeEEEEcCCCcEEEeec
Q psy18231 492 -------SSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC 523 (540)
Q Consensus 492 -------~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~ 523 (540)
+..+..+ .+...|.+++|||||+.+|+++
T Consensus 314 v~lW~~~g~~l~~~---~~~~~I~~va~SPdG~~lA~~~ 349 (588)
T 2j04_A 314 FKKWSTIWNEFNNY---ETTLVIHGISLSPDGYSIAIVY 349 (588)
T ss_dssp HHHTTTTTTSSSSS---CCEEEEEEEEECTTSSEEEEEE
T ss_pred EEEEECCCCceeee---ccceEEEEEEECCCCCEEEEEE
Confidence 1112222 2356799999999999999987
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-34 Score=281.95 Aligned_cols=251 Identities=18% Similarity=0.249 Sum_probs=211.1
Q ss_pred EEeecCCcceeEEEEeeC-CCeEEEeeCCCeEEEEEcCC----------CceeEeccccCCceeEEEECCCCC-EEEEec
Q psy18231 200 KTYGGHAHEVNDATAACD-SSQIASGASDKSVILWEVTT----------GQPVRRWREHASKVTCVKFNEDSS-VVISGS 267 (540)
Q Consensus 200 ~~~~~h~~~v~~l~~sp~-~~~l~s~s~dg~i~iwd~~~----------~~~~~~~~~h~~~v~~~~~~~~~~-~l~s~~ 267 (540)
.....|.+.|++++|+|+ +.+|++++.||.|++||+.+ .+.+..+.+|...|.+++|+|++. +|++++
T Consensus 122 ~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~ 201 (430)
T 2xyi_A 122 EIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSAS 201 (430)
T ss_dssp EEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEEC
T ss_pred EEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEe
Confidence 445679999999999997 78999999999999999987 577788889999999999999988 999999
Q ss_pred CCCcEEEEEecCCCCCCcchhhhhHhhhhcCCceeEEEEeecccccccccCceeeEEEeeeecccccceeeeeeccceeE
Q psy18231 268 QDNTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLM 347 (540)
Q Consensus 268 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (540)
.||.|++||+.........
T Consensus 202 ~dg~i~vwd~~~~~~~~~~------------------------------------------------------------- 220 (430)
T 2xyi_A 202 DDHTICLWDINATPKEHRV------------------------------------------------------------- 220 (430)
T ss_dssp TTSCEEEEETTSCCBGGGE-------------------------------------------------------------
T ss_pred CCCeEEEEeCCCCCCCCce-------------------------------------------------------------
Confidence 9999999999875410000
Q ss_pred EEeecccceecccccccccccchhhhhhcccccEEEEEecC---CeeEeeeCCCeEEEEeCCCC---ceEEeee--CCce
Q psy18231 348 VLLDFLGSTQIGDVTPISIHNSCFQALKEARDSITSVHVSD---HEILTASLDCRIRRYDIRTG---NLVTDYV--GEPI 419 (540)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~---~~l~~~~~dg~i~iwd~~~~---~~~~~~~--~~~i 419 (540)
......+..|...|.+++|+| ..+++++.||.|++||++++ +.+..+. ...|
T Consensus 221 --------------------~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v 280 (430)
T 2xyi_A 221 --------------------IDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEV 280 (430)
T ss_dssp --------------------EECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCE
T ss_pred --------------------eccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCe
Confidence 000114457889999999987 68889999999999999987 4555554 3689
Q ss_pred EEEEEecCCc-EEEeecCCCeEEEEeccc-cchhhhhccCcCCcceEEEEecCCCC-eEEEeeCCCcEEEEEecCC----
Q psy18231 420 VDACFTRDCQ-CILTCSTDECLRLFDKAT-GELLEEYKGHKSGDFRIECCLDSKDS-QIFCGSSDGKIYKWQLVDS---- 492 (540)
Q Consensus 420 ~~~~~sp~~~-~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~v~~~~~~~s~~~~-~l~s~s~dg~i~iwd~~~~---- 492 (540)
++++|+|+++ ++++|+.||.|++||+++ .+.+..+..|...+..+ +|+|+++ +|++++.||.|++||+...
T Consensus 281 ~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i--~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~ 358 (430)
T 2xyi_A 281 NCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQV--QWSPHNETILASSGTDRRLHVWDLSKIGEEQ 358 (430)
T ss_dssp EEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEE--EECSSCTTEEEEEETTSCCEEEEGGGTTCCC
T ss_pred EEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEE--EECCCCCCEEEEEeCCCcEEEEeCCCCcccc
Confidence 9999999987 688999999999999998 56788889999998888 8999996 5999999999999999872
Q ss_pred ----------cceeEEEecccceeeeEEEEcCCCc-EEEeec-CCeeEEEEcccc
Q psy18231 493 ----------SQISTLIHSVGKAVVNSLCSHPTRK-HIMSAC-GNNVKLWTAEED 535 (540)
Q Consensus 493 ----------~~~~~~~~~~~~~~v~~l~~s~d~~-~l~s~~-d~~i~iw~~~~~ 535 (540)
+.+..+. +|...|++++|+|+++ +|++++ ||.|++|++.+.
T Consensus 359 ~~~~~~~~~~~~~~~~~--~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~ 411 (430)
T 2xyi_A 359 STEDAEDGPPELLFIHG--GHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAEN 411 (430)
T ss_dssp CHHHHHHCCTTEEEECC--CCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECHH
T ss_pred CccccccCCcceEEEcC--CCCCCceEEEECCCCCCEEEEEECCCCEEEeEcccc
Confidence 3444444 8899999999999999 888888 999999999764
|
| >4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-35 Score=280.79 Aligned_cols=255 Identities=10% Similarity=0.021 Sum_probs=197.9
Q ss_pred cceeeeecccccce-------------eeeeecCeEEEEeCCCCCEEEEe-----------eCCCcEEEEcCCCCeeE--
Q psy18231 146 EWSIRVYRPLTVNR-------------ELFVLSGLMHTRFPVDGSYCLTC-----------GSDKKIKLWNPYRNLLL-- 199 (540)
Q Consensus 146 ~~~i~~~~~~~~~~-------------~~~h~~~v~~v~~spdg~~lat~-----------~~dg~i~iwd~~~~~~~-- 199 (540)
+..|++|+...... ...|.+.|.+++++ ++.+++| +.|+++++|++.+....
T Consensus 42 ~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~--~~~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~ 119 (365)
T 4h5i_A 42 PNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDAS--KGIILVGCNENSTKITQGKGNKHLRKFKYDKVNDQLE 119 (365)
T ss_dssp CEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEE--TTEEEEECCCCHHHHHHTSCCCCEEEEEEETTTTEEE
T ss_pred CCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeC--CCEEEEEECCCccEEEEecCCCcEEEEEecCCCceEE
Confidence 44689998654321 12356678887664 4566654 45788999987654322
Q ss_pred --EEe-----ecCCcceeEEEEeeCCCeEEEe--eCCCeEEEEEcCCCceeEeccccCCceeEEEECCCCCEEEEecCCC
Q psy18231 200 --KTY-----GGHAHEVNDATAACDSSQIASG--ASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDN 270 (540)
Q Consensus 200 --~~~-----~~h~~~v~~l~~sp~~~~l~s~--s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg 270 (540)
... ..+...+.+++|||||++|+++ +.|++|+|||+++++++..+. |.+.|.+++|+|||+++++++. +
T Consensus 120 ~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~~~-~~~~V~~v~fspdg~~l~s~s~-~ 197 (365)
T 4h5i_A 120 FLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKFEIE-TRGEVKDLHFSTDGKVVAYITG-S 197 (365)
T ss_dssp EEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEEEEE-CSSCCCEEEECTTSSEEEEECS-S
T ss_pred EeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEEeC-CCCceEEEEEccCCceEEeccc-e
Confidence 111 2244568899999999998654 478999999999999988875 7889999999999999999985 4
Q ss_pred cEEEEEecCCCCCCcchhhhhHhhhhcCCceeEEEEeecccccccccCceeeEEEeeeecccccceeeeeeccceeEEEe
Q psy18231 271 TVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLL 350 (540)
Q Consensus 271 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (540)
.+.+|+..+++....
T Consensus 198 ~~~~~~~~~~~~~~~----------------------------------------------------------------- 212 (365)
T 4h5i_A 198 SLEVISTVTGSCIAR----------------------------------------------------------------- 212 (365)
T ss_dssp CEEEEETTTCCEEEE-----------------------------------------------------------------
T ss_pred eEEEEEeccCcceee-----------------------------------------------------------------
Confidence 577777766542100
Q ss_pred ecccceecccccccccccchhhhhhcccccEEEEEecC--CeeEeeeCCC----eEEEEeCCCCceE----EeeeC--Cc
Q psy18231 351 DFLGSTQIGDVTPISIHNSCFQALKEARDSITSVHVSD--HEILTASLDC----RIRRYDIRTGNLV----TDYVG--EP 418 (540)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~--~~l~~~~~dg----~i~iwd~~~~~~~----~~~~~--~~ 418 (540)
.....|...|.+++|+| ..+++++.|+ .+++||+...... ..+.+ ..
T Consensus 213 ---------------------~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 271 (365)
T 4h5i_A 213 ---------------------KTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKG 271 (365)
T ss_dssp ---------------------ECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSC
T ss_pred ---------------------eecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCC
Confidence 13346788899999998 7788888877 6889998776542 23333 57
Q ss_pred eEEEEEecCCcEEEeecCCCeEEEEeccccchhhh-hccCcCCcceEEEEecCCCCeEEEeeCCCcEEEEEecCC
Q psy18231 419 IVDACFTRDCQCILTCSTDECLRLFDKATGELLEE-YKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDS 492 (540)
Q Consensus 419 i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~-~~~~~~~v~~~~~~~s~~~~~l~s~s~dg~i~iwd~~~~ 492 (540)
|++++|+|+|++||+|+.|++|+|||+++++++.+ +++|...|+++ +|+|||++||+||.|++|+|||+...
T Consensus 272 V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v--~fSpdg~~laS~S~D~tvrvw~ip~~ 344 (365)
T 4h5i_A 272 ITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQAHSFAITEV--TISPDSTYVASVSAANTIHIIKLPLN 344 (365)
T ss_dssp EEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEETTSSSSCEEEE--EECTTSCEEEEEETTSEEEEEECCTT
T ss_pred eEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEecCcccCCEEEE--EECCCCCEEEEEeCCCeEEEEEcCCC
Confidence 99999999999999999999999999999999887 47899999988 89999999999999999999999643
|
| >4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-34 Score=278.64 Aligned_cols=280 Identities=16% Similarity=0.116 Sum_probs=177.0
Q ss_pred eecccccceeeeeecCeEEEEeCCCCCEEEEeeCCCcEEEEcCCCCeeEE-----EeecCCcceeEEEEee--------C
Q psy18231 151 VYRPLTVNRELFVLSGLMHTRFPVDGSYCLTCGSDKKIKLWNPYRNLLLK-----TYGGHAHEVNDATAAC--------D 217 (540)
Q Consensus 151 ~~~~~~~~~~~~h~~~v~~v~~spdg~~lat~~~dg~i~iwd~~~~~~~~-----~~~~h~~~v~~l~~sp--------~ 217 (540)
.|..........|...+....+++++++||+++.|++|+|||..+++... .+.+|.+.|++++|+| |
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d 155 (393)
T 4gq1_A 76 SFSSSCSYSENLHDGDGNVNSSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLA 155 (393)
T ss_dssp EECTTCEEECC----------CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEE
T ss_pred eecCCccccccccCCCcceeecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCC
Confidence 34444433444566777777888899999999999999999998886543 3578999999999998 8
Q ss_pred CCeEEEeeCCCeEEEEEcCCCceeEeccccCCceeEEEECCCC-CEEEEecCCCcEEEEEecCCCCCCcchhhhhHhhhh
Q psy18231 218 SSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDS-SVVISGSQDNTVMMWDVKSRSHHPIQVRCLNEALKE 296 (540)
Q Consensus 218 ~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 296 (540)
+++||+++.|++|+|||+.++.++..+..|.+.|.+++|+|++ .+|++++.||+|++||+++++......... ..
T Consensus 156 ~~~las~s~D~tv~~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~----~~ 231 (393)
T 4gq1_A 156 EQVIASVGDDCTLIIWRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTE----LV 231 (393)
T ss_dssp EEEEEEEETTSEEEEEEEETTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC--------------C
T ss_pred CCEEEEEECCCeEEEEECCCCceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccC----Cc
Confidence 8999999999999999999998888888999999999999987 589999999999999998876311110000 00
Q ss_pred cCCceeEEEEeecccccccccCceeeEEEeeeecccccceeeeeeccceeEEEeecccceecccccccccccchhhhhhc
Q psy18231 297 ARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKE 376 (540)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (540)
.... ...... ..........+
T Consensus 232 ~~~~----------------------------------------------~~s~~~-------------~~~~~~~~~~~ 252 (393)
T 4gq1_A 232 KNPW----------------------------------------------LLTLNT-------------LPLVNTCHSSG 252 (393)
T ss_dssp SCCC----------------------------------------------SEEEES-------------GGGC------C
T ss_pred ccce----------------------------------------------EEeccc-------------ccceeeeeccc
Confidence 0000 000000 00000001123
Q ss_pred ccccEEEEEecCCeeEeeeCCCeEEEEeCCCCceEEeeeCCceEEEEEe-cCCcEEEeecCCCeEEEEeccccchhhhhc
Q psy18231 377 ARDSITSVHVSDHEILTASLDCRIRRYDIRTGNLVTDYVGEPIVDACFT-RDCQCILTCSTDECLRLFDKATGELLEEYK 455 (540)
Q Consensus 377 ~~~~v~~l~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~i~~~~~s-p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~ 455 (540)
|... +.++.|+ |+++.+++++.|+++++||+..++....+.
T Consensus 253 ~~~~--------------------------------------v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~ 294 (393)
T 4gq1_A 253 IASS--------------------------------------LANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEIS 294 (393)
T ss_dssp CSSS--------------------------------------CSEEEEETTTTCEEEEECTTSEEEEEEC----------
T ss_pred cccc--------------------------------------ceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEe
Confidence 3333 4444444 455555555555555555555544443333
Q ss_pred cCcCCcceE----------------EEEecC--CCCeEEEeeCCCcEEEEEecCCcceeEEEecccceeeeEEEEcCCCc
Q psy18231 456 GHKSGDFRI----------------ECCLDS--KDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRK 517 (540)
Q Consensus 456 ~~~~~v~~~----------------~~~~s~--~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~ 517 (540)
.|...+..+ ...+++ ++.++++|+.||+|++||+.+++....+. .|..+|.+++|+|||+
T Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~--~~~~~V~svafspdG~ 372 (393)
T 4gq1_A 295 DSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIPI--QLGMPIVDFCWHQDGS 372 (393)
T ss_dssp ---------CCSCSEEEECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCCEEEE--ECSSCEEEEEECTTSS
T ss_pred eecCccccEEEccccccccccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEEEEec--CCCCcEEEEEEcCCCC
Confidence 332222111 112333 44567889999999999999999988887 7889999999999999
Q ss_pred EEEeecCCeeEEEEcc
Q psy18231 518 HIMSACGNNVKLWTAE 533 (540)
Q Consensus 518 ~l~s~~d~~i~iw~~~ 533 (540)
+||+++++.+.+|++.
T Consensus 373 ~LA~as~~Gv~lvrL~ 388 (393)
T 4gq1_A 373 HLAIATEGSVLLTRLM 388 (393)
T ss_dssp EEEEEESSEEEEEEEG
T ss_pred EEEEEeCCCeEEEEEe
Confidence 9999997778888764
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-33 Score=273.41 Aligned_cols=277 Identities=10% Similarity=0.067 Sum_probs=231.1
Q ss_pred eecCeEEEEeCCCCCEEEEeeCCCcEEEEcCCCCeeEE-----EeecCCcceeEEEEeeCCCeEEEeeCCCeEEEEEcCC
Q psy18231 163 VLSGLMHTRFPVDGSYCLTCGSDKKIKLWNPYRNLLLK-----TYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTT 237 (540)
Q Consensus 163 h~~~v~~v~~spdg~~lat~~~dg~i~iwd~~~~~~~~-----~~~~h~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~ 237 (540)
+...+.+++|+|+++++++++.++.|++||+.+++.+. .+.+|...|.+++|+|+++++++++.|+.|++||+++
T Consensus 121 ~~~~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~ 200 (433)
T 3bws_A 121 TGFQPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKT 200 (433)
T ss_dssp CSSCBCCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTT
T ss_pred CCCCceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCC
Confidence 44567799999988888888889999999999998887 3457899999999999999999999999999999999
Q ss_pred CceeEeccccCCceeEEEECCCCCEEE-EecCCCcEEEEEecCCCCCCcchhhhhHhhhhcCCceeEEEEeecccccccc
Q psy18231 238 GQPVRRWREHASKVTCVKFNEDSSVVI-SGSQDNTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHLS 316 (540)
Q Consensus 238 ~~~~~~~~~h~~~v~~~~~~~~~~~l~-s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (540)
++.+..+..|...+.+++|+|++++++ +++.|+.|++||+++++. ..
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~--~~------------------------------ 248 (433)
T 3bws_A 201 LAYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLE--IR------------------------------ 248 (433)
T ss_dssp CCEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEE--EE------------------------------
T ss_pred ceEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcE--EE------------------------------
Confidence 999999989999999999999998875 555799999999987641 00
Q ss_pred cCceeeEEEeeeecccccceeeeeeccceeEEEeecccceecccccccccccchhhhhhcccccEEEEEecC--CeeEee
Q psy18231 317 NGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEARDSITSVHVSD--HEILTA 394 (540)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~--~~l~~~ 394 (540)
.+. +...+.+++++| +.++++
T Consensus 249 --------------------------------------------------------~~~-~~~~~~~~~~~~~g~~l~~~ 271 (433)
T 3bws_A 249 --------------------------------------------------------KTD-KIGLPRGLLLSKDGKELYIA 271 (433)
T ss_dssp --------------------------------------------------------ECC-CCSEEEEEEECTTSSEEEEE
T ss_pred --------------------------------------------------------Eec-CCCCceEEEEcCCCCEEEEE
Confidence 111 123478899988 577777
Q ss_pred e--------CCCeEEEEeCCCCceEEeee-CCceEEEEEecCCcE-EEeecCCCeEEEEeccccchhhhhccCcCCcceE
Q psy18231 395 S--------LDCRIRRYDIRTGNLVTDYV-GEPIVDACFTRDCQC-ILTCSTDECLRLFDKATGELLEEYKGHKSGDFRI 464 (540)
Q Consensus 395 ~--------~dg~i~iwd~~~~~~~~~~~-~~~i~~~~~sp~~~~-l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~ 464 (540)
+ .|+.|++||+++++.+..+. ...+.+++|+|+++. +++++.|+.|++||+.+++.+..+. +...+..+
T Consensus 272 ~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~-~~~~~~~~ 350 (433)
T 3bws_A 272 QFSASNQESGGGRLGIYSMDKEKLIDTIGPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIP-VFDKPNTI 350 (433)
T ss_dssp EEESCTTCSCCEEEEEEETTTTEEEEEEEEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEEE-CSSSEEEE
T ss_pred ECCCCccccCCCeEEEEECCCCcEEeeccCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEec-CCCCCCeE
Confidence 7 58899999999998776664 357889999999975 5666899999999999988877775 45556655
Q ss_pred EEEecCCCCeEEEeeC---------------CCcEEEEEecCCcceeEEEecccceeeeEEEEcCCCcEEEeec--CCee
Q psy18231 465 ECCLDSKDSQIFCGSS---------------DGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC--GNNV 527 (540)
Q Consensus 465 ~~~~s~~~~~l~s~s~---------------dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~--d~~i 527 (540)
+|+|+|++|++++. ||.|++||+.+++.+..+. . ...+.+++|+|+|++|++++ |+.|
T Consensus 351 --~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~--~-~~~~~~~~~s~dg~~l~~~~~~d~~i 425 (433)
T 3bws_A 351 --ALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWE--A-GNQPTGLDVSPDNRYLVISDFLDHQI 425 (433)
T ss_dssp --EECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEE--C-SSSEEEEEECTTSCEEEEEETTTTEE
T ss_pred --EEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEec--C-CCCCceEEEcCCCCEEEEEECCCCeE
Confidence 89999999888876 5799999999999888887 3 45789999999999988764 9999
Q ss_pred EEEEccc
Q psy18231 528 KLWTAEE 534 (540)
Q Consensus 528 ~iw~~~~ 534 (540)
++|++++
T Consensus 426 ~v~~~~~ 432 (433)
T 3bws_A 426 RVYRRDG 432 (433)
T ss_dssp EEEEETT
T ss_pred EEEEecC
Confidence 9999863
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.7e-34 Score=280.39 Aligned_cols=276 Identities=14% Similarity=0.220 Sum_probs=202.7
Q ss_pred CCcceeEEEEeeCCCeEEEeeCCCeEEEEEcCCCc-----------eeEeccccC------------CceeEEEECCCC-
Q psy18231 205 HAHEVNDATAACDSSQIASGASDKSVILWEVTTGQ-----------PVRRWREHA------------SKVTCVKFNEDS- 260 (540)
Q Consensus 205 h~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~-----------~~~~~~~h~------------~~v~~~~~~~~~- 260 (540)
|.+.|++++|+|++++||+|+.||.|+|||+.+++ ....+.+|. ..|.+++|+|++
T Consensus 27 ~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~ 106 (447)
T 3dw8_B 27 EADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKN 106 (447)
T ss_dssp GGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCCS
T ss_pred ccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCCC
Confidence 67899999999999999999999999999999877 477788998 889999999998
Q ss_pred -CEEEEecCCCcEEEEEecCCCCCCcchhhhhHhhhhcCCceeEEEEeecccccccccCceeeEEEeeeecccccceeee
Q psy18231 261 -SVVISGSQDNTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGV 339 (540)
Q Consensus 261 -~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (540)
.+|++++.||+|++||+.+........... .... .... ...........
T Consensus 107 ~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~-----~~~g---~~~~----------------------~~~~~~~~~~~ 156 (447)
T 3dw8_B 107 AAQFLLSTNDKTIKLWKISERDKRPEGYNLK-----EEDG---RYRD----------------------PTTVTTLRVPV 156 (447)
T ss_dssp SSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------------------------------------CCCCCSCCCCE
T ss_pred cceEEEeCCCCeEEEEecccccCCcceeccc-----Cccc---cccC----------------------cccccceEecc
Confidence 799999999999999998754210000000 0000 0000 00000000000
Q ss_pred eeccceeEEEeecccceecccccccccccchhh-hhhcccccEEEEEecC--CeeEeeeCCCeEEEEeCCC-CceEEee-
Q psy18231 340 LMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQ-ALKEARDSITSVHVSD--HEILTASLDCRIRRYDIRT-GNLVTDY- 414 (540)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~l~~~~--~~l~~~~~dg~i~iwd~~~-~~~~~~~- 414 (540)
..... ... ...... ...+|...|.+++|+| ++++++ .|+.|++||+++ ++.+..+
T Consensus 157 -~~~~~-~~~-----------------~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~ 216 (447)
T 3dw8_B 157 -FRPMD-LMV-----------------EASPRRIFANAHTYHINSISINSDYETYLSA-DDLRINLWHLEITDRSFNIVD 216 (447)
T ss_dssp -EEEEE-EEE-----------------EEEEEEEECSCCSSCCCEEEECTTSSEEEEE-CSSEEEEEETTEEEEEEEEEE
T ss_pred -ccchh-eee-----------------eccceEEeccCCCcceEEEEEcCCCCEEEEe-CCCeEEEEECCCCCceeeeee
Confidence 00000 000 000011 2357899999999998 778887 899999999994 4444422
Q ss_pred ------e--CCceEEEEEecCC-cEEEeecCCCeEEEEeccccch----hhhhccCcC------------CcceEEEEec
Q psy18231 415 ------V--GEPIVDACFTRDC-QCILTCSTDECLRLFDKATGEL----LEEYKGHKS------------GDFRIECCLD 469 (540)
Q Consensus 415 ------~--~~~i~~~~~sp~~-~~l~~~~~dg~i~i~d~~~~~~----~~~~~~~~~------------~v~~~~~~~s 469 (540)
. ...|.+++|+|++ ++|++++.||.|++||+++++. +..+..|.. .+..+ +|+
T Consensus 217 ~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~s 294 (447)
T 3dw8_B 217 IKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDV--KFS 294 (447)
T ss_dssp CCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEE--EEC
T ss_pred cccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccccceeeEeccCCCccccccccccCceEEEE--EEC
Confidence 2 3579999999998 9999999999999999999886 677777775 77777 899
Q ss_pred CCCCeEEEeeCCCcEEEEEecC-CcceeEEEeccccee---------------eeEEEEcCCCcEEEeec-CCeeEEEEc
Q psy18231 470 SKDSQIFCGSSDGKIYKWQLVD-SSQISTLIHSVGKAV---------------VNSLCSHPTRKHIMSAC-GNNVKLWTA 532 (540)
Q Consensus 470 ~~~~~l~s~s~dg~i~iwd~~~-~~~~~~~~~~~~~~~---------------v~~l~~s~d~~~l~s~~-d~~i~iw~~ 532 (540)
|++++|++++. +.|++||+.+ ++++..+. .|... +..++|+|++++|++++ ||.|++||+
T Consensus 295 ~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~ 371 (447)
T 3dw8_B 295 HSGRYMMTRDY-LSVKVWDLNMENRPVETYQ--VHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDR 371 (447)
T ss_dssp TTSSEEEEEES-SEEEEEETTCCSSCSCCEE--SCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEET
T ss_pred CCCCEEEEeeC-CeEEEEeCCCCccccceee--ccccccccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEc
Confidence 99999999999 9999999997 88888888 67542 33499999999999999 999999999
Q ss_pred ccc
Q psy18231 533 EED 535 (540)
Q Consensus 533 ~~~ 535 (540)
.++
T Consensus 372 ~~~ 374 (447)
T 3dw8_B 372 NTK 374 (447)
T ss_dssp TTC
T ss_pred CCC
Confidence 765
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-33 Score=268.02 Aligned_cols=265 Identities=11% Similarity=0.094 Sum_probs=210.9
Q ss_pred EEeCCCCCEEEEeeCCCcEEEEcCCCCeeEEEeecCCcceeEEEEeeCCCeEEEeeCCCeEEEEEcC---------CCce
Q psy18231 170 TRFPVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVT---------TGQP 240 (540)
Q Consensus 170 v~~spdg~~lat~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~---------~~~~ 240 (540)
..+.+++++|++|+.||+|++||+.+++.+..+. ...|.++.|+|+ +++++.|++|++|+.. +++.
T Consensus 42 ~~~~~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~--~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~~~~~~~~ 116 (343)
T 3lrv_A 42 KSMYYDKWVCMCRCEDGALHFTQLKDSKTITTIT--TPNPRTGGEHPA---IISRGPCNRLLLLYPGNQITILDSKTNKV 116 (343)
T ss_dssp SSSSEEEEEEEEEEETTEEEEEEESSSSCEEEEE--EECCCTTCCCCS---EEEECSTTEEEEEETTTEEEEEETTTCCE
T ss_pred hhhcCCCCEEEEECCCCcEEEEECCCCcEEEEEe--cCCceeeeeCCc---eEEecCCCeEEEEEccCceEEeecCCcce
Confidence 3456788999999999999999999999888887 577888999988 9999999999999765 4554
Q ss_pred eEecc-ccCCceeEEEECC--CCCEEEEecCCCcEEEEEecCCCCCCcchhhhhHhhhhcCCceeEEEEeeccccccccc
Q psy18231 241 VRRWR-EHASKVTCVKFNE--DSSVVISGSQDNTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHLSN 317 (540)
Q Consensus 241 ~~~~~-~h~~~v~~~~~~~--~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (540)
+..+. +|.+.|.+++|+| +++++++++.||+|++||+++++. ..
T Consensus 117 ~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~--~~------------------------------- 163 (343)
T 3lrv_A 117 LREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQ--YI------------------------------- 163 (343)
T ss_dssp EEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCE--EE-------------------------------
T ss_pred eEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcE--EE-------------------------------
Confidence 44443 6778999999999 999999999999999999987762 00
Q ss_pred CceeeEEEeeeecccccceeeeeeccceeEEEeecccceecccccccccccchhhhhhcccccEEEEEecC--CeeEeee
Q psy18231 318 GLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEARDSITSVHVSD--HEILTAS 395 (540)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~--~~l~~~~ 395 (540)
.....+...+.+++|+| .++++|+
T Consensus 164 ------------------------------------------------------~~~~~~~~~i~~~~~~pdg~~lasg~ 189 (343)
T 3lrv_A 164 ------------------------------------------------------VHSAKSDVEYSSGVLHKDSLLLALYS 189 (343)
T ss_dssp ------------------------------------------------------EECCCSSCCCCEEEECTTSCEEEEEC
T ss_pred ------------------------------------------------------EEecCCCCceEEEEECCCCCEEEEEc
Confidence 00123455689999998 7899999
Q ss_pred CCCeEEEEeCCCCceE-EeeeC---CceEEEEEecCCcEEEeecCCCeEEEEeccccchhhhhcc---CcCCcceEEEEe
Q psy18231 396 LDCRIRRYDIRTGNLV-TDYVG---EPIVDACFTRDCQCILTCSTDECLRLFDKATGELLEEYKG---HKSGDFRIECCL 468 (540)
Q Consensus 396 ~dg~i~iwd~~~~~~~-~~~~~---~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~---~~~~v~~~~~~~ 468 (540)
.||.|++||+++++.+ ..+.. .+|.+++|+|++.+|++++ |+.|++||+++++.+..+.. |...+....++|
T Consensus 190 ~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (343)
T 3lrv_A 190 PDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDI 268 (343)
T ss_dssp TTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSSTTCBSSCCCBC-----CCEEEEE
T ss_pred CCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCcceeecccccccccccceEEEE
Confidence 9999999999999876 55554 5899999999999999999 55999999999887766654 434444323589
Q ss_pred cCCCCeEEEeeC-CCcEEEEEecCCcceeEEEecccceeeeEEEEcC---CCcEEEeec-CCeeEEEEcc
Q psy18231 469 DSKDSQIFCGSS-DGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHP---TRKHIMSAC-GNNVKLWTAE 533 (540)
Q Consensus 469 s~~~~~l~s~s~-dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~---d~~~l~s~~-d~~i~iw~~~ 533 (540)
+|+|++|++++. |+.|++|++......... .++..++|++ +.+.|++++ |+.+.++-..
T Consensus 269 ~~~g~~l~~~s~~d~~i~v~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~ 332 (343)
T 3lrv_A 269 DDSGKNMIAYSNESNSLTIYKFDKKTKNWTK------DEESALCLQSDTADFTDMDVVCGDGGIAAILKT 332 (343)
T ss_dssp CTTSSEEEEEETTTTEEEEEEECTTTCSEEE------EEEEECCC----CCCCEEEEEEETTEEEEEEEC
T ss_pred CCCCCEEEEecCCCCcEEEEEEcccccceEe------cCceeEecCccccccceeEEEecCCceEEEEec
Confidence 999999999998 999999999766544332 5678888988 888999988 9998887543
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-33 Score=265.46 Aligned_cols=256 Identities=11% Similarity=0.090 Sum_probs=220.3
Q ss_pred hhhhcccccceeeeecccccc------eeeeeecCeEEEEeCCCCC-EEEEeeCCCcEEEEcC-CCCeeEEEeec--CCc
Q psy18231 138 RILYELPKEWSIRVYRPLTVN------RELFVLSGLMHTRFPVDGS-YCLTCGSDKKIKLWNP-YRNLLLKTYGG--HAH 207 (540)
Q Consensus 138 ~~~~~~~~~~~i~~~~~~~~~------~~~~h~~~v~~v~~spdg~-~lat~~~dg~i~iwd~-~~~~~~~~~~~--h~~ 207 (540)
..++.++.++.|++|+..... ....|...|.+++|+|+++ +|++|+.||.|++||+ .+++. ..+.+ |..
T Consensus 24 ~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~-~~~~~~~~~~ 102 (342)
T 1yfq_A 24 SLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSF-QALTNNEANL 102 (342)
T ss_dssp TEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSSE-EECBSCCCCS
T ss_pred CEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEEEeccCCce-EeccccCCCC
Confidence 455667888999999986643 3456899999999999999 9999999999999999 77754 77888 999
Q ss_pred ceeEEEEeeCCCeEEEeeCCCeEEEEEcCC---------CceeEeccccCCceeEEEECCCCCEEEEecCCCcEEEEEec
Q psy18231 208 EVNDATAACDSSQIASGASDKSVILWEVTT---------GQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVK 278 (540)
Q Consensus 208 ~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~---------~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~ 278 (540)
.|.+++|+| +++|++++.|+.|++||+++ ++++..+. |...|.+++|+|++ +++++.||.|++||++
T Consensus 103 ~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~--l~~~~~d~~i~i~d~~ 178 (342)
T 1yfq_A 103 GICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK-VKNKIFTMDTNSSR--LIVGMNNSQVQWFRLP 178 (342)
T ss_dssp CEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS-SCCCEEEEEECSSE--EEEEESTTEEEEEESS
T ss_pred ceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEe-eCCceEEEEecCCc--EEEEeCCCeEEEEECC
Confidence 999999999 99999999999999999988 77777776 89999999999886 9999999999999998
Q ss_pred C-CCCCCcchhhhhHhhhhcCCceeEEEEeecccccccccCceeeEEEeeeecccccceeeeeeccceeEEEeeccccee
Q psy18231 279 S-RSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQ 357 (540)
Q Consensus 279 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (540)
+ .......
T Consensus 179 ~~~~~~~~~----------------------------------------------------------------------- 187 (342)
T 1yfq_A 179 LCEDDNGTI----------------------------------------------------------------------- 187 (342)
T ss_dssp CCTTCCCEE-----------------------------------------------------------------------
T ss_pred cccccccee-----------------------------------------------------------------------
Confidence 7 4411100
Q ss_pred cccccccccccchhhhhhcccccEEEEEecC---CeeEeeeCCCeEEEEeCCCC------ceEEeeeCC-----------
Q psy18231 358 IGDVTPISIHNSCFQALKEARDSITSVHVSD---HEILTASLDCRIRRYDIRTG------NLVTDYVGE----------- 417 (540)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~---~~l~~~~~dg~i~iwd~~~~------~~~~~~~~~----------- 417 (540)
....|...+.+++|+| +.+++++.||.|++|+++.. +....+..+
T Consensus 188 ---------------~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (342)
T 1yfq_A 188 ---------------EESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAY 252 (342)
T ss_dssp ---------------EECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCC
T ss_pred ---------------eecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccceeeecccccccccccce
Confidence 2235667899999986 78999999999999999887 666666653
Q ss_pred ceEEEEEecCCcEEEeecCCCeEEEEeccccchhhhhccC-cCCcceEEEEecCCCCeEEEeeCCCc-EEEEE
Q psy18231 418 PIVDACFTRDCQCILTCSTDECLRLFDKATGELLEEYKGH-KSGDFRIECCLDSKDSQIFCGSSDGK-IYKWQ 488 (540)
Q Consensus 418 ~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-~~~v~~~~~~~s~~~~~l~s~s~dg~-i~iwd 488 (540)
.|.+++|+|++++|++++.||.|++||+.+++.+..+.+| ...|..+ + |++++|++++.||. .+.|.
T Consensus 253 ~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~--~--~~~~~l~s~s~Dg~~~~~~~ 321 (342)
T 1yfq_A 253 PVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKI--A--CSDNILCLATSDDTFKTNAA 321 (342)
T ss_dssp CEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSSEEEEE--E--ECSSEEEEEEECTHHHHCSS
T ss_pred eEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhhhcccCCCceEe--c--CCCCeEEEEecCCccccccc
Confidence 8999999999999999999999999999999999999998 8888877 4 99999999999998 55554
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-33 Score=272.68 Aligned_cols=247 Identities=15% Similarity=0.236 Sum_probs=210.7
Q ss_pred eeeeeecCeEEEEeCCC-CCEEEEeeCCCcEEEEcCCC----------CeeEEEeecCCcceeEEEEeeCCC-eEEEeeC
Q psy18231 159 RELFVLSGLMHTRFPVD-GSYCLTCGSDKKIKLWNPYR----------NLLLKTYGGHAHEVNDATAACDSS-QIASGAS 226 (540)
Q Consensus 159 ~~~~h~~~v~~v~~spd-g~~lat~~~dg~i~iwd~~~----------~~~~~~~~~h~~~v~~l~~sp~~~-~l~s~s~ 226 (540)
....|.+.|++++|+|+ +++||+++.||.|++||+.+ ...+..+.+|...|++++|+|++. +|++++.
T Consensus 123 ~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~ 202 (430)
T 2xyi_A 123 IKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASD 202 (430)
T ss_dssp EEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEECT
T ss_pred EEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEeC
Confidence 45679999999999997 78999999999999999876 677888999999999999999988 9999999
Q ss_pred CCeEEEEEcCCCce-------eEeccccCCceeEEEECC-CCCEEEEecCCCcEEEEEecCCCCCCcchhhhhHhhhhcC
Q psy18231 227 DKSVILWEVTTGQP-------VRRWREHASKVTCVKFNE-DSSVVISGSQDNTVMMWDVKSRSHHPIQVRCLNEALKEAR 298 (540)
Q Consensus 227 dg~i~iwd~~~~~~-------~~~~~~h~~~v~~~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 298 (540)
||.|++||+.++.. ...+.+|...|.+++|+| ++.+|++++.||.|++||+++.....
T Consensus 203 dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~-------------- 268 (430)
T 2xyi_A 203 DHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSK-------------- 268 (430)
T ss_dssp TSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSS--------------
T ss_pred CCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCc--------------
Confidence 99999999987432 455678999999999999 77899999999999999998764100
Q ss_pred CceeEEEEeecccccccccCceeeEEEeeeecccccceeeeeeccceeEEEeecccceecccccccccccchhhhhhccc
Q psy18231 299 DSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEAR 378 (540)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (540)
....+..|.
T Consensus 269 -----------------------------------------------------------------------~~~~~~~~~ 277 (430)
T 2xyi_A 269 -----------------------------------------------------------------------PSHTVDAHT 277 (430)
T ss_dssp -----------------------------------------------------------------------CSEEEECCS
T ss_pred -----------------------------------------------------------------------ceeEeecCC
Confidence 111345788
Q ss_pred ccEEEEEecC---CeeEeeeCCCeEEEEeCCC-CceEEeee--CCceEEEEEecCCc-EEEeecCCCeEEEEeccc----
Q psy18231 379 DSITSVHVSD---HEILTASLDCRIRRYDIRT-GNLVTDYV--GEPIVDACFTRDCQ-CILTCSTDECLRLFDKAT---- 447 (540)
Q Consensus 379 ~~v~~l~~~~---~~l~~~~~dg~i~iwd~~~-~~~~~~~~--~~~i~~~~~sp~~~-~l~~~~~dg~i~i~d~~~---- 447 (540)
..|.+++|+| .++++++.||.|++||+++ .+.+..+. ...|.+++|+|+++ +|++++.|+.|++||+..
T Consensus 278 ~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~ 357 (430)
T 2xyi_A 278 AEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEE 357 (430)
T ss_dssp SCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCC
T ss_pred CCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccc
Confidence 8999999998 3688999999999999998 45566665 36899999999985 699999999999999987
Q ss_pred ----------cchhhhhccCcCCcceEEEEecCCCC-eEEEeeCCCcEEEEEecCC
Q psy18231 448 ----------GELLEEYKGHKSGDFRIECCLDSKDS-QIFCGSSDGKIYKWQLVDS 492 (540)
Q Consensus 448 ----------~~~~~~~~~~~~~v~~~~~~~s~~~~-~l~s~s~dg~i~iwd~~~~ 492 (540)
.+.+..+.+|...+..+ +|+|+++ +|++++.||.|++|++...
T Consensus 358 ~~~~~~~~~~~~~~~~~~~h~~~v~~~--~~~p~~~~~l~s~s~dg~i~iw~~~~~ 411 (430)
T 2xyi_A 358 QSTEDAEDGPPELLFIHGGHTAKISDF--SWNPNEPWIICSVSEDNIMQVWQMAEN 411 (430)
T ss_dssp CCHHHHHHCCTTEEEECCCCSSCEEEE--EECSSSTTEEEEEETTSEEEEEEECHH
T ss_pred cCccccccCCcceEEEcCCCCCCceEE--EECCCCCCEEEEEECCCCEEEeEcccc
Confidence 24556677888888877 8999999 8999999999999998654
|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=8e-34 Score=296.99 Aligned_cols=249 Identities=16% Similarity=0.208 Sum_probs=208.2
Q ss_pred EEEeecCCcceeEEEEeeCCCeEEEeeCCCeEEEEEcC--CCceeEeccccCCceeEEEECCC--CCEEEEecCCCcEEE
Q psy18231 199 LKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVT--TGQPVRRWREHASKVTCVKFNED--SSVVISGSQDNTVMM 274 (540)
Q Consensus 199 ~~~~~~h~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~--~~~~~~~~~~h~~~v~~~~~~~~--~~~l~s~~~dg~i~i 274 (540)
+..+.+|.+.|++++|+|++++|++|+.||+|+|||+. +++.+..+.+|.+.|.+++|+|+ +++|++|+.||.|++
T Consensus 2 ~~~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~v 81 (753)
T 3jro_A 2 VVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLI 81 (753)
T ss_dssp ------CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEE
T ss_pred eeecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEE
Confidence 34678999999999999999999999999999999998 55777888999999999999987 999999999999999
Q ss_pred EEecCCCCCCcchhhhhHhhhhcCCceeEEEEeecccccccccCceeeEEEeeeecccccceeeeeeccceeEEEeeccc
Q psy18231 275 WDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLG 354 (540)
Q Consensus 275 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (540)
||+.+++...
T Consensus 82 wd~~~~~~~~---------------------------------------------------------------------- 91 (753)
T 3jro_A 82 WKEENGRWSQ---------------------------------------------------------------------- 91 (753)
T ss_dssp EEEETTEEEE----------------------------------------------------------------------
T ss_pred EECCCCcccc----------------------------------------------------------------------
Confidence 9998764111
Q ss_pred ceecccccccccccchhhhhhcccccEEEEEecC----CeeEeeeCCCeEEEEeCCCCce--EEeee--CCceEEEEEec
Q psy18231 355 STQIGDVTPISIHNSCFQALKEARDSITSVHVSD----HEILTASLDCRIRRYDIRTGNL--VTDYV--GEPIVDACFTR 426 (540)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~----~~l~~~~~dg~i~iwd~~~~~~--~~~~~--~~~i~~~~~sp 426 (540)
...+..|...|.+++|+| +.+++++.||.|++||++++.. ...+. ...|.+++|+|
T Consensus 92 ----------------~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p 155 (753)
T 3jro_A 92 ----------------IAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAP 155 (753)
T ss_dssp ----------------EEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECC
T ss_pred ----------------cccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecC
Confidence 114557889999999997 4899999999999999998733 22333 36899999999
Q ss_pred -------------CCcEEEeecCCCeEEEEecccc----chhhhhccCcCCcceEEEEecCC---CCeEEEeeCCCcEEE
Q psy18231 427 -------------DCQCILTCSTDECLRLFDKATG----ELLEEYKGHKSGDFRIECCLDSK---DSQIFCGSSDGKIYK 486 (540)
Q Consensus 427 -------------~~~~l~~~~~dg~i~i~d~~~~----~~~~~~~~~~~~v~~~~~~~s~~---~~~l~s~s~dg~i~i 486 (540)
+++++++|+.||.|++||++++ .....+.+|...|.++ +|+|+ +++|++|+.||.|++
T Consensus 156 ~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l--~~sp~~~~~~~l~s~s~Dg~I~i 233 (753)
T 3jro_A 156 ATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDV--AWSPTVLLRSYLASVSQDRTCII 233 (753)
T ss_dssp CC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEE--EECCCCSSSEEEEEEESSSCEEE
T ss_pred cccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEE--EeccCCCCCCEEEEEecCCEEEE
Confidence 5899999999999999999877 4567788899999888 89999 899999999999999
Q ss_pred EEecCCcce---eEEEecccceeeeEEEEcCCCcEEEeec-CCeeEEEEcccc
Q psy18231 487 WQLVDSSQI---STLIHSVGKAVVNSLCSHPTRKHIMSAC-GNNVKLWTAEED 535 (540)
Q Consensus 487 wd~~~~~~~---~~~~~~~~~~~v~~l~~s~d~~~l~s~~-d~~i~iw~~~~~ 535 (540)
||+.+++.. .......|...|++++|+|++++|++++ ||.|++|++..+
T Consensus 234 wd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~~ 286 (753)
T 3jro_A 234 WTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLE 286 (753)
T ss_dssp EEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCCSS
T ss_pred ecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCCC
Confidence 999887421 1111225889999999999999999999 999999999853
|
| >2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-32 Score=246.43 Aligned_cols=269 Identities=13% Similarity=0.090 Sum_probs=185.6
Q ss_pred eEEEEeCCCCC---EEEEeeCCCcEEEEcCCCC---eeEEEeecCCcceeEEEEeeCCCeEEEeeC-C---CeEEEEEcC
Q psy18231 167 LMHTRFPVDGS---YCLTCGSDKKIKLWNPYRN---LLLKTYGGHAHEVNDATAACDSSQIASGAS-D---KSVILWEVT 236 (540)
Q Consensus 167 v~~v~~spdg~---~lat~~~dg~i~iwd~~~~---~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~-d---g~i~iwd~~ 236 (540)
+.++.|-.-|- -+++++ ...|++|+..++ +.+++++.|+.+|..+.+.||..-|++..- + +.|+..-+.
T Consensus 42 ~~~~~~~~~~~~~~~~~~~~-~~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~sla~s 120 (356)
T 2w18_A 42 VSAMFWERAGCKEPCIITAC-EDVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVALGNLEIREIRALFCS 120 (356)
T ss_dssp EEEEEEC----CEEEEEEEE-SSEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSCEEEEECSSSEEEEEEECC-
T ss_pred EeeeeeccCCCCccEEEEec-cceEEEcccCCCccceeeEEEeccCceeEEEEEcCcccceeeeeeccccccceEEEEEC
Confidence 45555544332 456666 689999999998 899999999988888888885544333211 1 111111111
Q ss_pred CC----ceeEeccccCCceeEEEECCCCCEEEEec--CCCcEEEEEecC-CCCCCcchhhhhHhhhhcCCceeEEEEeec
Q psy18231 237 TG----QPVRRWREHASKVTCVKFNEDSSVVISGS--QDNTVMMWDVKS-RSHHPIQVRCLNEALKEARDSITSVHSLVK 309 (540)
Q Consensus 237 ~~----~~~~~~~~h~~~v~~~~~~~~~~~l~s~~--~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (540)
.. .....-.+|...|..+ ++++++.+++ .|+.|++|++.. ++.
T Consensus 121 pd~~~~~~~l~s~g~~~~v~~l---~~g~lv~ss~~g~d~~V~~~~~s~dG~~--------------------------- 170 (356)
T 2w18_A 121 SDDESEKQVLLKSGNIKAVLGL---TKRRLVSSSGTLSDQQVEVMTFAEDGGG--------------------------- 170 (356)
T ss_dssp -----CCEEEEEEEEEEEEEEE---TTTEEEEEESSSTTCEEEEEEECTTSCE---------------------------
T ss_pred CCccccccEEEeCCCeEEEEec---CCCcEEEecccCCCCcEEEEEECCCCce---------------------------
Confidence 11 1111112344445443 5666666643 588899998844 320
Q ss_pred ccccccccCceeeEEEeeeecccccceeeeeeccceeEEEeecccceecccccccccccchhhhhhcccccEEEEEecC-
Q psy18231 310 STKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEARDSITSVHVSD- 388 (540)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~- 388 (540)
+..+..|...+..++|++
T Consensus 171 -------------------------------------------------------------~~s~~~~~~~v~~l~fs~~ 189 (356)
T 2w18_A 171 -------------------------------------------------------------KENQFLMPPEETILTFAEV 189 (356)
T ss_dssp -------------------------------------------------------------EEEEEECCCSSCEEEEEEE
T ss_pred -------------------------------------------------------------eeeeccCCCceeeEEeecc
Confidence 113345666666666665
Q ss_pred ----CeeEeeeCCCeEEEEeCCCCceEEeeeCC-----ceEEEEEecCCcEE------------EeecCCCeEEEEeccc
Q psy18231 389 ----HEILTASLDCRIRRYDIRTGNLVTDYVGE-----PIVDACFTRDCQCI------------LTCSTDECLRLFDKAT 447 (540)
Q Consensus 389 ----~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-----~i~~~~~sp~~~~l------------~~~~~dg~i~i~d~~~ 447 (540)
..|++++.|++|++||++++++++++.++ .+.+++|+|+|+++ ++|+.|++|++||..+
T Consensus 190 ~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~t 269 (356)
T 2w18_A 190 QGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKT 269 (356)
T ss_dssp ETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTT
T ss_pred CCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCC
Confidence 78999999999999999999999999752 57788999999987 5678899999999999
Q ss_pred cchhhhh-----ccCcCCcceEEEEecCCCCeEEEeeCCCcEEEEEecCCcceeEEEecccceeee-EEEEcCCCcEEEe
Q psy18231 448 GELLEEY-----KGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVN-SLCSHPTRKHIMS 521 (540)
Q Consensus 448 ~~~~~~~-----~~~~~~v~~~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~-~l~~s~d~~~l~s 521 (540)
++.+..+ .+|.... + ..+.++.++++|+.|++|+|||+.+++++.++. +|...+. .++|||||++|++
T Consensus 270 gk~l~v~~~~~p~Gh~~~~--l--sg~~sg~~lASgS~DgTIkIWDl~tGk~l~tL~--gH~~~vvs~vafSPDG~~LaS 343 (356)
T 2w18_A 270 TLSVGVMLYCLPPGQAGRF--L--EGDVKDHCAAAILTSGTIAIWDLLLGQCTALLP--PVSDQHWSFVKWSGTDSHLLA 343 (356)
T ss_dssp TEEEEEEEECCCTTCCCCE--E--EEEEETTEEEEEETTSCEEEEETTTCSEEEEEC--CC--CCCCEEEECSSSSEEEE
T ss_pred CEEEEEEEeeccCCCccee--E--ccccCCCEEEEEcCCCcEEEEECCCCcEEEEec--CCCCCeEEEEEECCCCCEEEE
Confidence 9877654 3565442 3 223337889999999999999999999999998 7877655 6899999999999
Q ss_pred ec-CCeeEEEEcc
Q psy18231 522 AC-GNNVKLWTAE 533 (540)
Q Consensus 522 ~~-d~~i~iw~~~ 533 (540)
|+ |++|+|||+.
T Consensus 344 GS~D~TIklWd~~ 356 (356)
T 2w18_A 344 GQKDGNIFVYHYS 356 (356)
T ss_dssp ECTTSCEEEEEEC
T ss_pred EECCCcEEEecCC
Confidence 99 9999999963
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-31 Score=259.09 Aligned_cols=301 Identities=11% Similarity=0.098 Sum_probs=236.5
Q ss_pred hhhcccccceeeeecccccce--eeeeecCeEEEEeCCCCCEE-EEeeCCCcEEEEcCCCCeeEEEeecCCcceeEEEEe
Q psy18231 139 ILYELPKEWSIRVYRPLTVNR--ELFVLSGLMHTRFPVDGSYC-LTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAA 215 (540)
Q Consensus 139 ~~~~~~~~~~i~~~~~~~~~~--~~~h~~~v~~v~~spdg~~l-at~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s 215 (540)
++...+.++.|++|+..+... ...+...+.+++|+|+|++| ++++.|+.|++||+.+++.+..+..+. .+.+++|+
T Consensus 4 l~vs~~~d~~v~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~-~v~~~~~s 82 (391)
T 1l0q_A 4 AYIANSESDNISVIDVTSNKVTATIPVGSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQGVAVS 82 (391)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-SEEEEEEC
T ss_pred EEEEcCCCCEEEEEECCCCeEEEEeecCCCcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCC-CccceEEC
Confidence 345567788999999877543 34455679999999999987 577789999999999999999888655 89999999
Q ss_pred eCCCeEEE-eeCCCeEEEEEcCCCceeEeccccCCceeEEEECCCCCEE-EEecCCCcEEEEEecCCCCCCcchhhhhHh
Q psy18231 216 CDSSQIAS-GASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVV-ISGSQDNTVMMWDVKSRSHHPIQVRCLNEA 293 (540)
Q Consensus 216 p~~~~l~s-~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l-~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 293 (540)
|++++|+. ++.++.|++||+.+++.+..+.. ...+.+++|+|+++++ ++++.|+.|++||+.+++.. .
T Consensus 83 pdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~--~------- 152 (391)
T 1l0q_A 83 PDGKQVYVTNMASSTLSVIDTTSNTVAGTVKT-GKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVI--N------- 152 (391)
T ss_dssp TTSSEEEEEETTTTEEEEEETTTTEEEEEEEC-SSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEE--E-------
T ss_pred CCCCEEEEEECCCCEEEEEECCCCeEEEEEeC-CCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEE--E-------
Confidence 99998754 55679999999999998887765 4578999999999977 68888999999999876410 0
Q ss_pred hhhcCCceeEEEEeecccccccccCceeeEEEeeeecccccceeeeeeccceeEEEeecccceecccccccccccchhhh
Q psy18231 294 LKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQA 373 (540)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (540)
.
T Consensus 153 -------------------------------------------------------------------------------~ 153 (391)
T 1l0q_A 153 -------------------------------------------------------------------------------T 153 (391)
T ss_dssp -------------------------------------------------------------------------------E
T ss_pred -------------------------------------------------------------------------------E
Confidence 1
Q ss_pred hhcccccEEEEEecC--Cee-EeeeCCCeEEEEeCCCCceEEeeeC-CceEEEEEecCCcEEEeec---CCCeEEEEecc
Q psy18231 374 LKEARDSITSVHVSD--HEI-LTASLDCRIRRYDIRTGNLVTDYVG-EPIVDACFTRDCQCILTCS---TDECLRLFDKA 446 (540)
Q Consensus 374 ~~~~~~~v~~l~~~~--~~l-~~~~~dg~i~iwd~~~~~~~~~~~~-~~i~~~~~sp~~~~l~~~~---~dg~i~i~d~~ 446 (540)
+.. ...+.+++|+| +.+ ++++.++.|++||+++++.+..+.. ..+.+++|+|++++|++++ .++.|++||+.
T Consensus 154 ~~~-~~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~ 232 (391)
T 1l0q_A 154 VSV-GRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTG 232 (391)
T ss_dssp EEC-CSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETT
T ss_pred Eec-CCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEecCCCccceEECCCCCEEEEEecCcCCCcEEEEECC
Confidence 111 23457888988 455 6778899999999999988877764 5789999999999999888 68999999999
Q ss_pred ccchhhhhccCcCCcceEEEEecCCCCeE-EEeeCCCcEEEEEecCCcceeEEEecccceeee---EEEEcC--------
Q psy18231 447 TGELLEEYKGHKSGDFRIECCLDSKDSQI-FCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVN---SLCSHP-------- 514 (540)
Q Consensus 447 ~~~~~~~~~~~~~~v~~~~~~~s~~~~~l-~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~---~l~~s~-------- 514 (540)
+++.+..+..|.. +..+ +|+|++++| ++++.|+.|++||+.+++.+..+. .|..+.. .+.+.|
T Consensus 233 ~~~~~~~~~~~~~-~~~~--~~s~dg~~l~~s~~~d~~v~v~d~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~a 307 (391)
T 1l0q_A 233 TNKITARIPVGPD-PAGI--AVTPDGKKVYVALSFXNTVSVIDTATNTITATMA--VGKNPYASGQFIGSIPVQPVYPSA 307 (391)
T ss_dssp TTEEEEEEECCSS-EEEE--EECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE--CSSSEECCSSCEEECSSCCCCCBC
T ss_pred CCeEEEEEecCCC-ccEE--EEccCCCEEEEEcCCCCEEEEEECCCCcEEEEEE--CCcCCCccceeeeccccccccccc
Confidence 9988888877654 4444 899999987 677899999999999999988887 4443321 122222
Q ss_pred ----CC----------cEEEeec-CCeeEEEEcccc
Q psy18231 515 ----TR----------KHIMSAC-GNNVKLWTAEED 535 (540)
Q Consensus 515 ----d~----------~~l~s~~-d~~i~iw~~~~~ 535 (540)
+. ..+...+ |..+++|++.++
T Consensus 308 ~fs~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~g 343 (391)
T 1l0q_A 308 DFKSNITSGYIFLSEPVQFTDLSKDATEWKWDFGDG 343 (391)
T ss_dssp CEEESCCSSEEETTCCEEEEECCBSCSEEEEECSSS
T ss_pred ccccccccccccccceEEEEeCCCCceEEEEECCCC
Confidence 11 3355556 889999999665
|
| >3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-32 Score=262.59 Aligned_cols=248 Identities=12% Similarity=0.090 Sum_probs=191.2
Q ss_pred EEcCCCCeeEEEeecCCcceeEEEEeeCCCeEEEeeCCCeEEEEEcCCCceeEeccccCCceeEEEECCCCCEE-EEecC
Q psy18231 190 LWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVV-ISGSQ 268 (540)
Q Consensus 190 iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l-~s~~~ 268 (540)
||++.+.+++..+..|...|++++|+|||++|++|+.++ +++||+.+++...... ...+..+++.++++.+ ++++.
T Consensus 3 i~s~~~~~~~~~~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 79 (355)
T 3vu4_A 3 LGSMITRNPIVPENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIMSQE--MRHLSKVRMLHRTNYVAFVTGV 79 (355)
T ss_dssp ----------------CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEEEEE--CSCCCEEEECTTSSEEEEECSS
T ss_pred cccccccCCccccccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceeeeee--cCCeEEEEEcCCCCEEEEEECC
Confidence 567777778888889999999999999999999998775 7899998877665432 2358888999988877 56788
Q ss_pred CCcEEEEEecCCCCCCcchhhhhHhhhhcCCceeEEEEeecccccccccCceeeEEEeeeecccccceeeeeeccceeEE
Q psy18231 269 DNTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMV 348 (540)
Q Consensus 269 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (540)
|++|++||+.+++. +.
T Consensus 80 d~~v~iWd~~~~~~--~~-------------------------------------------------------------- 95 (355)
T 3vu4_A 80 KEVVHIWDDVKKQD--VS-------------------------------------------------------------- 95 (355)
T ss_dssp TTEEEEEETTTTEE--EE--------------------------------------------------------------
T ss_pred ccEEEEEECCCCcE--EE--------------------------------------------------------------
Confidence 89999999987651 00
Q ss_pred EeecccceecccccccccccchhhhhhcccccEEEEEecCCeeEeeeCCCeEEEEeCCCC-ceEEeeeCCceEEEEEecC
Q psy18231 349 LLDFLGSTQIGDVTPISIHNSCFQALKEARDSITSVHVSDHEILTASLDCRIRRYDIRTG-NLVTDYVGEPIVDACFTRD 427 (540)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~i~~~~~sp~ 427 (540)
.+ .+...|.++.++++.++++. |+.|++||+.++ +.+..+.. +...+++++
T Consensus 96 ------------------------~~-~~~~~v~~v~~~~~~~~~~~-~~~i~i~d~~~~~~~~~~~~~-~~~~~~~s~- 147 (355)
T 3vu4_A 96 ------------------------RI-KVDAPVKDLFLSREFIVVSY-GDVISVFKFGNPWKRITDDIR-FGGVCEFSN- 147 (355)
T ss_dssp ------------------------EE-ECSSCEEEEEECSSEEEEEE-TTEEEEEESSTTCCBSSCCEE-EEEEEEEET-
T ss_pred ------------------------EE-ECCCceEEEEEcCCEEEEEE-cCEEEEEECCCCceeeEEecc-CCceEEEEc-
Confidence 11 24568899999997776654 789999999988 66666655 566677888
Q ss_pred CcEEEe--ecCCCeEEEEeccccc----------------hhhhhccCcCCcceEEEEecCCCCeEEEeeCCCc-EEEEE
Q psy18231 428 CQCILT--CSTDECLRLFDKATGE----------------LLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGK-IYKWQ 488 (540)
Q Consensus 428 ~~~l~~--~~~dg~i~i~d~~~~~----------------~~~~~~~~~~~v~~~~~~~s~~~~~l~s~s~dg~-i~iwd 488 (540)
.++++ |+.||.|++||+.+++ .+..+.+|...|.++ +|+|+|++|++|+.|++ |++||
T Consensus 148 -~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~--~~s~~g~~l~s~s~d~~~v~iwd 224 (355)
T 3vu4_A 148 -GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMV--RLNRKSDMVATCSQDGTIIRVFK 224 (355)
T ss_dssp -TEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEE--EECTTSSEEEEEETTCSEEEEEE
T ss_pred -cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEE--EECCCCCEEEEEeCCCCEEEEEE
Confidence 55555 6889999999999865 267889999999888 89999999999999998 99999
Q ss_pred ecCCcceeEEEecccceeeeEEEEcCCCcEEEeec-CCeeEEEEcccc
Q psy18231 489 LVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC-GNNVKLWTAEED 535 (540)
Q Consensus 489 ~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~-d~~i~iw~~~~~ 535 (540)
+.+++++..+....|...|.+++|+|++++|++++ |++|++||++.+
T Consensus 225 ~~~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~ 272 (355)
T 3vu4_A 225 TEDGVLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFND 272 (355)
T ss_dssp TTTCCEEEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCC
T ss_pred CCCCcEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCC
Confidence 99999999987423899999999999999999999 999999999765
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-31 Score=257.06 Aligned_cols=262 Identities=12% Similarity=0.130 Sum_probs=216.9
Q ss_pred CEEEEeeCCCcEEEEcCCCCeeEEEeecCCcceeEEEEeeCCCeE-EEeeCCCeEEEEEcCCCceeEeccccCCceeEEE
Q psy18231 177 SYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQI-ASGASDKSVILWEVTTGQPVRRWREHASKVTCVK 255 (540)
Q Consensus 177 ~~lat~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l-~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~ 255 (540)
..+++++.|+.|++||+.+++.+..+..|. .+.+++|+|++++| ++++.|++|++||+.+++.+..+..+. .+.+++
T Consensus 3 ~l~vs~~~d~~v~v~d~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~-~v~~~~ 80 (391)
T 1l0q_A 3 FAYIANSESDNISVIDVTSNKVTATIPVGS-NPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQGVA 80 (391)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEEECSS-SEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-SEEEEE
T ss_pred EEEEEcCCCCEEEEEECCCCeEEEEeecCC-CcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCC-CccceE
Confidence 357788999999999999999999998765 48999999999987 677789999999999999988886555 899999
Q ss_pred ECCCCCEEE-EecCCCcEEEEEecCCCCCCcchhhhhHhhhhcCCceeEEEEeecccccccccCceeeEEEeeeeccccc
Q psy18231 256 FNEDSSVVI-SGSQDNTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNG 334 (540)
Q Consensus 256 ~~~~~~~l~-s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (540)
|+|++++|+ +++.++.|++||+.+++.. .
T Consensus 81 ~spdg~~l~~~~~~~~~v~v~d~~~~~~~--~------------------------------------------------ 110 (391)
T 1l0q_A 81 VSPDGKQVYVTNMASSTLSVIDTTSNTVA--G------------------------------------------------ 110 (391)
T ss_dssp ECTTSSEEEEEETTTTEEEEEETTTTEEE--E------------------------------------------------
T ss_pred ECCCCCEEEEEECCCCEEEEEECCCCeEE--E------------------------------------------------
Confidence 999999775 5556799999999876510 0
Q ss_pred ceeeeeeccceeEEEeecccceecccccccccccchhhhhhcccccEEEEEecC--Cee-EeeeCCCeEEEEeCCCCceE
Q psy18231 335 LLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEARDSITSVHVSD--HEI-LTASLDCRIRRYDIRTGNLV 411 (540)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~--~~l-~~~~~dg~i~iwd~~~~~~~ 411 (540)
.+ .+...+.+++|+| +.+ ++++.|+.|++||+.+++.+
T Consensus 111 --------------------------------------~~-~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~ 151 (391)
T 1l0q_A 111 --------------------------------------TV-KTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVI 151 (391)
T ss_dssp --------------------------------------EE-ECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEE
T ss_pred --------------------------------------EE-eCCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEE
Confidence 11 1234578899998 455 67888999999999999988
Q ss_pred EeeeC-CceEEEEEecCCcEE-EeecCCCeEEEEeccccchhhhhccCcCCcceEEEEecCCCCeEEEee---CCCcEEE
Q psy18231 412 TDYVG-EPIVDACFTRDCQCI-LTCSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGS---SDGKIYK 486 (540)
Q Consensus 412 ~~~~~-~~i~~~~~sp~~~~l-~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~s~~~~~l~s~s---~dg~i~i 486 (540)
..+.. ..+..++|+|+++++ ++++.++.|++||+++++.+..+..+ ..+..+ +|+|++++|++++ .++.|++
T Consensus 152 ~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~--~~~~~g~~l~~~~~~~~~~~v~~ 228 (391)
T 1l0q_A 152 NTVSVGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVE-AAPSGI--AVNPEGTKAYVTNVDKYFNTVSM 228 (391)
T ss_dssp EEEECCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECS-SEEEEE--EECTTSSEEEEEEECSSCCEEEE
T ss_pred EEEecCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEecC-CCccce--EECCCCCEEEEEecCcCCCcEEE
Confidence 88774 578999999999887 57788999999999998877766543 345555 8999999999888 6899999
Q ss_pred EEecCCcceeEEEecccceeeeEEEEcCCCcEE-Eeec-CCeeEEEEcccc
Q psy18231 487 WQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHI-MSAC-GNNVKLWTAEED 535 (540)
Q Consensus 487 wd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l-~s~~-d~~i~iw~~~~~ 535 (540)
||+.+++.+..+. .|. .+.+++|+|++++| ++++ |+.|++||++++
T Consensus 229 ~d~~~~~~~~~~~--~~~-~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~ 276 (391)
T 1l0q_A 229 IDTGTNKITARIP--VGP-DPAGIAVTPDGKKVYVALSFXNTVSVIDTATN 276 (391)
T ss_dssp EETTTTEEEEEEE--CCS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTT
T ss_pred EECCCCeEEEEEe--cCC-CccEEEEccCCCEEEEEcCCCCEEEEEECCCC
Confidence 9999999888887 444 47899999999887 5667 999999999764
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-32 Score=261.01 Aligned_cols=268 Identities=12% Similarity=0.187 Sum_probs=216.8
Q ss_pred hhhhhcccccceeeeecccc-cc----eeeeeecCeEEEEeCCCCCEEEEeeCCCcEEEEcCCCCeeEEEeecCCcceeE
Q psy18231 137 TRILYELPKEWSIRVYRPLT-VN----RELFVLSGLMHTRFPVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVND 211 (540)
Q Consensus 137 ~~~~~~~~~~~~i~~~~~~~-~~----~~~~h~~~v~~v~~spdg~~lat~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~ 211 (540)
...++.++.++.|++|+..+ .. ....|.+.|.+++|+|++++|++++.||.|++||+.+++.+. +..|...|.+
T Consensus 54 g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~-~~~~~~~v~~ 132 (368)
T 3mmy_A 54 GNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQ-IAQHDAPVKT 132 (368)
T ss_dssp SEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEE-EEECSSCEEE
T ss_pred ceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEcCCCcEEEEEcCCCCcee-eccccCceEE
Confidence 45677888999999999875 22 335589999999999999999999999999999999998776 5569999999
Q ss_pred EEE--eeCCCeEEEeeCCCeEEEEEcCCCceeEeccccCCceeEEEECCCCCEEEEecCCCcEEEEEecCCCCCCcchhh
Q psy18231 212 ATA--ACDSSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQVRC 289 (540)
Q Consensus 212 l~~--sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 289 (540)
++| +|++++|++++.||.|++||+++++.+..+..|. .+.++.+.+ ..+++++.++.+.+|+++........
T Consensus 133 ~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~-~~~~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~~~~--- 206 (368)
T 3mmy_A 133 IHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPE-RCYCADVIY--PMAVVATAERGLIVYQLENQPSEFRR--- 206 (368)
T ss_dssp EEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSS-CEEEEEEET--TEEEEEEGGGCEEEEECSSSCEEEEE---
T ss_pred EEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCC-CceEEEecC--CeeEEEeCCCcEEEEEeccccchhhh---
Confidence 999 8899999999999999999999999988887664 667777764 47888888999999999765410000
Q ss_pred hhHhhhhcCCceeEEEEeecccccccccCceeeEEEeeeecccccceeeeeeccceeEEEeecccceecccccccccccc
Q psy18231 290 LNEALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNS 369 (540)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (540)
T Consensus 207 -------------------------------------------------------------------------------- 206 (368)
T 3mmy_A 207 -------------------------------------------------------------------------------- 206 (368)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhhhhcccccEEEEEecC----CeeEeeeCCCeEEEEeCCCC---ceEEeeeCC--------------ceEEEEEecCC
Q psy18231 370 CFQALKEARDSITSVHVSD----HEILTASLDCRIRRYDIRTG---NLVTDYVGE--------------PIVDACFTRDC 428 (540)
Q Consensus 370 ~~~~~~~~~~~v~~l~~~~----~~l~~~~~dg~i~iwd~~~~---~~~~~~~~~--------------~i~~~~~sp~~ 428 (540)
......+...+.++...+ ..+++++.||.|++||++.. +.+..+..+ .|.+++|+|++
T Consensus 207 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~ 285 (368)
T 3mmy_A 207 -IESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVH 285 (368)
T ss_dssp -CCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTT
T ss_pred -ccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeeeeecccccccccccccceEEEEEecCC
Confidence 001112233333444433 33999999999999999987 445555442 59999999999
Q ss_pred cEEEeecCCCeEEEEeccccchhhhhccCcCCcceEEEEecCCCCeEEEeeCCCcEEEEEecCCcc
Q psy18231 429 QCILTCSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQ 494 (540)
Q Consensus 429 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~ 494 (540)
++|++++.||.|++||+.+++.+..+..|...+..+ +|+|+|++|++++.|+..+.|++.+.+.
T Consensus 286 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~--~~s~~g~~l~~~s~d~~~~~~~~~~~~~ 349 (368)
T 3mmy_A 286 GTLATVGSDGRFSFWDKDARTKLKTSEQLDQPISAC--CFNHNGNIFAYASSYDWSKGHEFYNPQK 349 (368)
T ss_dssp CCEEEEETTSCEEEEETTTTEEEEECCCCSSCEEEE--EECTTSSCEEEEECCCSTTCGGGCCTTS
T ss_pred CEEEEEccCCeEEEEECCCCcEEEEecCCCCCceEE--EECCCCCeEEEEecccccccccccCCCc
Confidence 999999999999999999999999999999999888 8999999999999998777666554433
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-32 Score=258.99 Aligned_cols=282 Identities=16% Similarity=0.180 Sum_probs=210.3
Q ss_pred cceeccccchhhhhhcccccceeeeecccccc-------eeeeeecCeEEEEeCC--CCCEEEEeeCCCcEEEEcCCCC-
Q psy18231 127 PLLFSLPRTITRILYELPKEWSIRVYRPLTVN-------RELFVLSGLMHTRFPV--DGSYCLTCGSDKKIKLWNPYRN- 196 (540)
Q Consensus 127 ~~~~s~~~~~~~~~~~~~~~~~i~~~~~~~~~-------~~~~h~~~v~~v~~sp--dg~~lat~~~dg~i~iwd~~~~- 196 (540)
.+.|+++ ...++.++.++.|++|+..+.. ....|.+.|.+++|+| |+++|++++.||+|++||+.++
T Consensus 16 ~~~~~~~---~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~ 92 (351)
T 3f3f_A 16 DVVYDFY---GRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQ 92 (351)
T ss_dssp EEEECSS---SSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEECTTS
T ss_pred EEEEcCC---CCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCc
Confidence 3445554 3456777889999999987542 1245999999999999 6999999999999999999887
Q ss_pred --------eeEEEeecCCcceeEEEEeeC--CCeEEEeeCCCeEEEEEcCCCceeEecc-------------ccCCceeE
Q psy18231 197 --------LLLKTYGGHAHEVNDATAACD--SSQIASGASDKSVILWEVTTGQPVRRWR-------------EHASKVTC 253 (540)
Q Consensus 197 --------~~~~~~~~h~~~v~~l~~sp~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~-------------~h~~~v~~ 253 (540)
+.+..+.+|...|.+++|+|+ +++|++++.||.|++||+++++.+..+. .|...+.+
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (351)
T 3f3f_A 93 EECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFC 172 (351)
T ss_dssp CTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEE
T ss_pred ccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccccCCcccceeE
Confidence 668888899999999999999 9999999999999999999887654433 68889999
Q ss_pred EEECCC---CCEEEEecCCCcEEEEEecCCCCCCcchhhhhHhhhhcCCceeEEEEeecccccccccCceeeEEEeeeec
Q psy18231 254 VKFNED---SSVVISGSQDNTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCK 330 (540)
Q Consensus 254 ~~~~~~---~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (540)
++|+|+ +.++++++.|+.+.+|+...++...
T Consensus 173 ~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~---------------------------------------------- 206 (351)
T 3f3f_A 173 LSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHV---------------------------------------------- 206 (351)
T ss_dssp EEECCCSSSCCEEEEEETTEEEEEEECTTSCEEE----------------------------------------------
T ss_pred EEeccCCCCCcEEEEecCCCcEEEEccCCCceee----------------------------------------------
Confidence 999997 8999999999999777766554111
Q ss_pred ccccceeeeeeccceeEEEeecccceecccccccccccchhhhhhcccccEEEEEecCC------eeEeeeCCCeEEEEe
Q psy18231 331 YLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEARDSITSVHVSDH------EILTASLDCRIRRYD 404 (540)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~------~l~~~~~dg~i~iwd 404 (540)
...+.+|...|.+++|+|. ++++++.||.|++||
T Consensus 207 ----------------------------------------~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd 246 (351)
T 3f3f_A 207 ----------------------------------------AAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFK 246 (351)
T ss_dssp ----------------------------------------EEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEE
T ss_pred ----------------------------------------eeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEEEe
Confidence 1145678899999999993 699999999999999
Q ss_pred CCCCceEEeeeC--CceEEEEEecCCcEEEee----cCCCeEEEEeccccchhhhhccCcCCcceEEEEecCCCCeEEEe
Q psy18231 405 IRTGNLVTDYVG--EPIVDACFTRDCQCILTC----STDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCG 478 (540)
Q Consensus 405 ~~~~~~~~~~~~--~~i~~~~~sp~~~~l~~~----~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~s~~~~~l~s~ 478 (540)
++++........ ........++....+..+ .....+.+|+....+.+..+.+|...|..+ +|+|++++|+++
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~--~~s~~~~~l~s~ 324 (351)
T 3f3f_A 247 ITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSV--SWNLTGTILSSA 324 (351)
T ss_dssp EEECC---------------------------------------CCSEEEEEEEEECTTSSCEEEE--EECSSSCCEEEE
T ss_pred CCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEecccccEEEE--EEcCCCCEEEEe
Confidence 987755444332 223333333433333333 345567788888888899999999999888 899999999999
Q ss_pred eCCCcEEEEEecCCcceeEEE
Q psy18231 479 SSDGKIYKWQLVDSSQISTLI 499 (540)
Q Consensus 479 s~dg~i~iwd~~~~~~~~~~~ 499 (540)
+.||.|++||+.+++.+..+.
T Consensus 325 ~~dg~v~iw~~~~~~~~~~~~ 345 (351)
T 3f3f_A 325 GDDGKVRLWKATYSNEFKCMS 345 (351)
T ss_dssp ETTSCEEEEEECTTSCEEEEE
T ss_pred cCCCcEEEEecCcCcchhhee
Confidence 999999999999987766654
|
| >2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-31 Score=240.35 Aligned_cols=209 Identities=14% Similarity=0.104 Sum_probs=162.2
Q ss_pred eecCeEEEEeCCC----CCEEEEeeC--------------------CCcEEEEcC-CCCeeEEEeecCCcceeEEEEee-
Q psy18231 163 VLSGLMHTRFPVD----GSYCLTCGS--------------------DKKIKLWNP-YRNLLLKTYGGHAHEVNDATAAC- 216 (540)
Q Consensus 163 h~~~v~~v~~spd----g~~lat~~~--------------------dg~i~iwd~-~~~~~~~~~~~h~~~v~~l~~sp- 216 (540)
|.+.|.+++|+|| ++++++++. |+.|++|++ .+++.+..+.+|...++.++|+|
T Consensus 110 ~~~~v~sla~spd~~~~~~~l~s~g~~~~v~~l~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~ 189 (356)
T 2w18_A 110 EIREIRALFCSSDDESEKQVLLKSGNIKAVLGLTKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEV 189 (356)
T ss_dssp SEEEEEEECC------CCEEEEEEEEEEEEEEETTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEE
T ss_pred cccceEEEEECCCccccccEEEeCCCeEEEEecCCCcEEEecccCCCCcEEEEEECCCCceeeeeccCCCceeeEEeecc
Confidence 3457888889999 888887553 899999998 55888888889999999999999
Q ss_pred --CCCeEEEeeCCCeEEEEEcCCCceeEeccccC---CceeEEEECCCCCEEEEecCCCcEEEEEecCCCCCCcchhhhh
Q psy18231 217 --DSSQIASGASDKSVILWEVTTGQPVRRWREHA---SKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQVRCLN 291 (540)
Q Consensus 217 --~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~---~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 291 (540)
++.+|++++.|++|+|||+.+|++++++.+|. ..+.+++|+|+|.++++++.+.. +|+
T Consensus 190 ~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~--~w~--------------- 252 (356)
T 2w18_A 190 QGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCA--KES--------------- 252 (356)
T ss_dssp ETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------------------
T ss_pred CCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCC--cce---------------
Confidence 77999999999999999999999999998654 36778899999999988876433 243
Q ss_pred HhhhhcCCceeEEEEeecccccccccCceeeEEEeeeecccccceeeeeeccceeEEEeecccceecccccccccccchh
Q psy18231 292 EALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCF 371 (540)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (540)
T Consensus 253 -------------------------------------------------------------------------------- 252 (356)
T 2w18_A 253 -------------------------------------------------------------------------------- 252 (356)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhhcccccEEEEEecCCeeEeeeCCCeEEEEeCCCCceEEeee-----CCceEEEEEecCCcEEEeecCCCeEEEEecc
Q psy18231 372 QALKEARDSITSVHVSDHEILTASLDCRIRRYDIRTGNLVTDYV-----GEPIVDACFTRDCQCILTCSTDECLRLFDKA 446 (540)
Q Consensus 372 ~~~~~~~~~v~~l~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-----~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~ 446 (540)
+++|+.|++|++||..+++.+..+. ++....+..+.++.++++++.|++|+|||+.
T Consensus 253 -------------------laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~sg~~lASgS~DgTIkIWDl~ 313 (356)
T 2w18_A 253 -------------------ESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDVKDHCAAAILTSGTIAIWDLL 313 (356)
T ss_dssp ------------------------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEEETTEEEEEETTSCEEEEETT
T ss_pred -------------------eeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEccccCCCEEEEEcCCCcEEEEECC
Confidence 5677789999999999998776542 3322223333447899999999999999999
Q ss_pred ccchhhhhccCcCCcce-EEEEecCCCCeEEEeeCCCcEEEEEe
Q psy18231 447 TGELLEEYKGHKSGDFR-IECCLDSKDSQIFCGSSDGKIYKWQL 489 (540)
Q Consensus 447 ~~~~~~~~~~~~~~v~~-~~~~~s~~~~~l~s~s~dg~i~iwd~ 489 (540)
+++++.++++|...+.. + +|+|||++|++|+.|++|+|||+
T Consensus 314 tGk~l~tL~gH~~~vvs~v--afSPDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 314 LGQCTALLPPVSDQHWSFV--KWSGTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp TCSEEEEECCC--CCCCEE--EECSSSSEEEEECTTSCEEEEEE
T ss_pred CCcEEEEecCCCCCeEEEE--EECCCCCEEEEEECCCcEEEecC
Confidence 99999999999876653 5 89999999999999999999996
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.98 E-value=2.1e-30 Score=255.54 Aligned_cols=241 Identities=14% Similarity=0.119 Sum_probs=201.5
Q ss_pred eeecCeEEEEeCCCCCEE-EEeeCCCcEEEEcCC--CCeeEEEee--cCCcceeEEEEeeCCCeEEEeeCCCeEEEEEcC
Q psy18231 162 FVLSGLMHTRFPVDGSYC-LTCGSDKKIKLWNPY--RNLLLKTYG--GHAHEVNDATAACDSSQIASGASDKSVILWEVT 236 (540)
Q Consensus 162 ~h~~~v~~v~~spdg~~l-at~~~dg~i~iwd~~--~~~~~~~~~--~h~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~ 236 (540)
.|.+.|.+++|+|++++| ++++.||.|++||+. +++.+..+. .|...|.+++|+|++++|++++.||.|++|++.
T Consensus 100 ~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~v~~~~~~ 179 (450)
T 2vdu_B 100 PIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTVIIADKFGDVYSIDIN 179 (450)
T ss_dssp CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred ccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCEEEEEeCCCcEEEEecC
Confidence 355579999999999996 899999999999999 888888886 567899999999999999999999999999998
Q ss_pred CCceeE----eccccCCceeEEEECCC---CCEEEEecCCCcEEEEEecCCCCCCcchhhhhHhhhhcCCceeEEEEeec
Q psy18231 237 TGQPVR----RWREHASKVTCVKFNED---SSVVISGSQDNTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVK 309 (540)
Q Consensus 237 ~~~~~~----~~~~h~~~v~~~~~~~~---~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (540)
+++... .+.+|...|.+++|+|+ +++|++++.|++|++||+++++. ..
T Consensus 180 ~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~--~~----------------------- 234 (450)
T 2vdu_B 180 SIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFI--VD----------------------- 234 (450)
T ss_dssp SCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTC--EE-----------------------
T ss_pred CcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCce--ee-----------------------
Confidence 887554 77899999999999999 99999999999999999987652 00
Q ss_pred ccccccccCceeeEEEeeeecccccceeeeeeccceeEEEeecccceecccccccccccchhhhhhcccccEEEEEec-C
Q psy18231 310 STKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEARDSITSVHVS-D 388 (540)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~-~ 388 (540)
..+.+|...|.+++|+ .
T Consensus 235 --------------------------------------------------------------~~~~~h~~~v~~~~~sd~ 252 (450)
T 2vdu_B 235 --------------------------------------------------------------KWLFGHKHFVSSICCGKD 252 (450)
T ss_dssp --------------------------------------------------------------EECCCCSSCEEEEEECST
T ss_pred --------------------------------------------------------------eeecCCCCceEEEEECCC
Confidence 0134688999999997 4
Q ss_pred CeeEeeeCCCeEEEEeCCCCceEEeeeC---------------------------CceEEEEEecCCcEEEeec-CCCeE
Q psy18231 389 HEILTASLDCRIRRYDIRTGNLVTDYVG---------------------------EPIVDACFTRDCQCILTCS-TDECL 440 (540)
Q Consensus 389 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~---------------------------~~i~~~~~sp~~~~l~~~~-~dg~i 440 (540)
.+|++++.|+.|++||+++++.+..+.. ..+.+++|+|++++|++++ .|+.|
T Consensus 253 ~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i 332 (450)
T 2vdu_B 253 YLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEATKCI 332 (450)
T ss_dssp TEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEETTCSEE
T ss_pred CEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEECCCCeE
Confidence 8999999999999999999998777652 3588999999999999998 89999
Q ss_pred EEEec--ccc---chhhhhccCcCCcceEEEEecCCCCeEEEeeC------CCcEEEEEecCC
Q psy18231 441 RLFDK--ATG---ELLEEYKGHKSGDFRIECCLDSKDSQIFCGSS------DGKIYKWQLVDS 492 (540)
Q Consensus 441 ~i~d~--~~~---~~~~~~~~~~~~v~~~~~~~s~~~~~l~s~s~------dg~i~iwd~~~~ 492 (540)
++||+ .++ +.+..+..| ..+..+ +|+|++.++++++. +..|.+|.+...
T Consensus 333 ~iw~~~~~~~~~l~~~~~~~~~-~~v~~~--~~~~~~~~v~~~~~~~~~~~~~~i~v~~~~~~ 392 (450)
T 2vdu_B 333 IILEMSEKQKGDLALKQIITFP-YNVISL--SAHNDEFQVTLDNKESSGVQKNFAKFIEYNLN 392 (450)
T ss_dssp EEEEECSSSTTCEEEEEEEECS-SCEEEE--EEETTEEEEEECCTTCCSSCCCSEEEEEEETT
T ss_pred EEEEeccCCCCceeeccEeccC-CceEEE--EecCCcEEEEEecccCCCCCCcceEEEEEEcC
Confidence 99999 555 666777777 666666 89996544444443 556899987543
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.98 E-value=7.3e-31 Score=249.17 Aligned_cols=256 Identities=11% Similarity=0.069 Sum_probs=201.3
Q ss_pred hhhhhcccccceeeeeccccccee-eeeecCeEEEEeCCCCCEEEEeeCCCcEEEEcCC---------CCeeEEEee-cC
Q psy18231 137 TRILYELPKEWSIRVYRPLTVNRE-LFVLSGLMHTRFPVDGSYCLTCGSDKKIKLWNPY---------RNLLLKTYG-GH 205 (540)
Q Consensus 137 ~~~~~~~~~~~~i~~~~~~~~~~~-~~h~~~v~~v~~spdg~~lat~~~dg~i~iwd~~---------~~~~~~~~~-~h 205 (540)
...+++++.|++|++|+..+.... ......|.++.|+|+ +++++.|++|++|+.. +++.+..+. +|
T Consensus 48 ~~~l~sg~~Dg~v~iwd~~~~~~~~~~~~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~ 124 (343)
T 3lrv_A 48 KWVCMCRCEDGALHFTQLKDSKTITTITTPNPRTGGEHPA---IISRGPCNRLLLLYPGNQITILDSKTNKVLREIEVDS 124 (343)
T ss_dssp EEEEEEEEETTEEEEEEESSSSCEEEEEEECCCTTCCCCS---EEEECSTTEEEEEETTTEEEEEETTTCCEEEEEECCC
T ss_pred CCEEEEECCCCcEEEEECCCCcEEEEEecCCceeeeeCCc---eEEecCCCeEEEEEccCceEEeecCCcceeEEeecCC
Confidence 345678899999999998876532 223678999999998 9999999999999655 455455544 67
Q ss_pred CcceeEEEEee--CCCeEEEeeCCCeEEEEEcCCCceeEecc-ccCCceeEEEECCCCCEEEEecCCCcEEEEEecCCCC
Q psy18231 206 AHEVNDATAAC--DSSQIASGASDKSVILWEVTTGQPVRRWR-EHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSH 282 (540)
Q Consensus 206 ~~~v~~l~~sp--~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~ 282 (540)
.+.|.+++|+| ++++|++++.||+|++||+++++.+.... .|...|.+++|+|++.+|++|+.||.|++||+++++.
T Consensus 125 ~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~ 204 (343)
T 3lrv_A 125 ANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQ 204 (343)
T ss_dssp SSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTSCEEEEESSCTTS
T ss_pred CCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCCC
Confidence 78999999999 99999999999999999999999876654 4566899999999999999999999999999998763
Q ss_pred CCcchhhhhHhhhhcCCceeEEEEeecccccccccCceeeEEEeeeecccccceeeeeeccceeEEEeecccceeccccc
Q psy18231 283 HPIQVRCLNEALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVT 362 (540)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (540)
..
T Consensus 205 ~~------------------------------------------------------------------------------ 206 (343)
T 3lrv_A 205 AS------------------------------------------------------------------------------ 206 (343)
T ss_dssp CC------------------------------------------------------------------------------
T ss_pred Cc------------------------------------------------------------------------------
Confidence 10
Q ss_pred ccccccchhhhhhc-ccccEEEEEecC--CeeEeeeCCCeEEEEeCCCCceEEeeeC-----Cce--EEEEEecCCcEEE
Q psy18231 363 PISIHNSCFQALKE-ARDSITSVHVSD--HEILTASLDCRIRRYDIRTGNLVTDYVG-----EPI--VDACFTRDCQCIL 432 (540)
Q Consensus 363 ~~~~~~~~~~~~~~-~~~~v~~l~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~-----~~i--~~~~~sp~~~~l~ 432 (540)
..+.. |...|.+++|+| .+|++++ |+.|++||+++++.+..+.. ..+ .+++|+|+|++|+
T Consensus 207 ---------~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~ 276 (343)
T 3lrv_A 207 ---------SRFPVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMI 276 (343)
T ss_dssp ---------EECCCCTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSSTTCBSSCCCBC-----CCEEEEECTTSSEEE
T ss_pred ---------cEEeccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCcceeecccccccccccceEEEECCCCCEEE
Confidence 12344 889999999998 6788888 55999999999877655442 233 3699999999999
Q ss_pred eecC-CCeEEEEeccccchhhhhccCcCCcceEEEEecC---CCCeEEEeeCCCcEEEEEe
Q psy18231 433 TCST-DECLRLFDKATGELLEEYKGHKSGDFRIECCLDS---KDSQIFCGSSDGKIYKWQL 489 (540)
Q Consensus 433 ~~~~-dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~s~---~~~~l~s~s~dg~i~iwd~ 489 (540)
+++. |+.+++|++.+....... .++..+ +|++ +...+++++.||.+.++-.
T Consensus 277 ~~s~~d~~i~v~~~~~~~~~~~~----~~~~~~--~~~~~~~~~~~l~~~~~d~~~~~~~~ 331 (343)
T 3lrv_A 277 AYSNESNSLTIYKFDKKTKNWTK----DEESAL--CLQSDTADFTDMDVVCGDGGIAAILK 331 (343)
T ss_dssp EEETTTTEEEEEEECTTTCSEEE----EEEEEC--CC----CCCCEEEEEEETTEEEEEEE
T ss_pred EecCCCCcEEEEEEcccccceEe----cCceeE--ecCccccccceeEEEecCCceEEEEe
Confidence 9988 999999998765432221 223334 6777 8889999999999998863
|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=7.8e-29 Score=247.89 Aligned_cols=308 Identities=12% Similarity=0.099 Sum_probs=240.7
Q ss_pred hhhhcccccceeeeeccccccee--eeeecCeEEEEeCCCCCEEEEeeCCCcEEEEcC--CCCeeEEEeecCCcceeEEE
Q psy18231 138 RILYELPKEWSIRVYRPLTVNRE--LFVLSGLMHTRFPVDGSYCLTCGSDKKIKLWNP--YRNLLLKTYGGHAHEVNDAT 213 (540)
Q Consensus 138 ~~~~~~~~~~~i~~~~~~~~~~~--~~h~~~v~~v~~spdg~~lat~~~dg~i~iwd~--~~~~~~~~~~~h~~~v~~l~ 213 (540)
.++.+...+++|.+|+..+.... +.....+..++|+|||++|++++.|++|++||+ .+++.+.++. +...+..++
T Consensus 150 ~~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~-~g~~p~~va 228 (543)
T 1nir_A 150 LFSVTLRDAGQIALVDGDSKKIVKVIDTGYAVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIK-IGIEARSVE 228 (543)
T ss_dssp EEEEEEGGGTEEEEEETTTCCEEEEEECSTTEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEE-CCSEEEEEE
T ss_pred EEEEEEcCCCeEEEEECCCceEEEEEecCcccceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEe-cCCCcceEE
Confidence 45566778899999998776532 221234889999999999999999999999999 8899998888 456789999
Q ss_pred Eee----CCCeEEEeeC-CCeEEEEEcCCCceeEeccc----------cC-CceeEEEECCCCC-EEEEecCCCcEEEEE
Q psy18231 214 AAC----DSSQIASGAS-DKSVILWEVTTGQPVRRWRE----------HA-SKVTCVKFNEDSS-VVISGSQDNTVMMWD 276 (540)
Q Consensus 214 ~sp----~~~~l~s~s~-dg~i~iwd~~~~~~~~~~~~----------h~-~~v~~~~~~~~~~-~l~s~~~dg~i~iwd 276 (540)
|+| ||++|++++. +++|.+||..+++++..+.. |. ..+..+.++|++. ++++...++.|.+||
T Consensus 229 ~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd 308 (543)
T 1nir_A 229 SSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVN 308 (543)
T ss_dssp ECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEE
T ss_pred eCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEE
Confidence 999 9999999885 89999999999999887754 22 3789999999765 566777899999999
Q ss_pred ecCCCCCCcchhhhhHhhhhcCCceeEEEEeecccccccccCceeeEEEeeeecccccceeeeeeccceeEEEeecccce
Q psy18231 277 VKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGST 356 (540)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (540)
+.+.+....
T Consensus 309 ~~~~~~l~~----------------------------------------------------------------------- 317 (543)
T 1nir_A 309 YKDIDNLTV----------------------------------------------------------------------- 317 (543)
T ss_dssp CTTSSSCEE-----------------------------------------------------------------------
T ss_pred ecCCCccee-----------------------------------------------------------------------
Confidence 987642000
Q ss_pred ecccccccccccchhhhhhcccccEEEEEecC--CeeEe-eeCCCeEEEEeCCCCceEEeeeC----CceEEEE-EecC-
Q psy18231 357 QIGDVTPISIHNSCFQALKEARDSITSVHVSD--HEILT-ASLDCRIRRYDIRTGNLVTDYVG----EPIVDAC-FTRD- 427 (540)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~--~~l~~-~~~dg~i~iwd~~~~~~~~~~~~----~~i~~~~-~sp~- 427 (540)
....+...+.++.|+| +++++ +..+++|.+||..+++++..+.. ++-..+. ++|+
T Consensus 318 ----------------~~i~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~~~p~~ 381 (543)
T 1nir_A 318 ----------------TSIGAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKY 381 (543)
T ss_dssp ----------------EEEECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEEEETTT
T ss_pred ----------------EEeccCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCcccCCCCC
Confidence 0001234456778888 55554 45689999999999999887763 3211222 4777
Q ss_pred CcEEEeec-CCCeEEEEeccc-------cchhhhhccCcCCcceEEEEecCCCCeEEEee-------CCCcEEEEEecCC
Q psy18231 428 CQCILTCS-TDECLRLFDKAT-------GELLEEYKGHKSGDFRIECCLDSKDSQIFCGS-------SDGKIYKWQLVDS 492 (540)
Q Consensus 428 ~~~l~~~~-~dg~i~i~d~~~-------~~~~~~~~~~~~~v~~~~~~~s~~~~~l~s~s-------~dg~i~iwd~~~~ 492 (540)
+..++++. .|++|.+||+.+ +++++++..|...+..+ +++|++++|++++ .+++|.+||+.++
T Consensus 382 g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v--~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~ 459 (543)
T 1nir_A 382 GPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFI--KTHPKSSHLYVDTTFNPDARISQSVAVFDLKNL 459 (543)
T ss_dssp EEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCE--ECCTTCCEEEECCTTCSSHHHHTCEEEEETTCT
T ss_pred ccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEE--EcCCCCCcEEEecCCCCCcccCceEEEEECCCC
Confidence 66667765 589999999988 78899999998777777 8999999999987 3789999999999
Q ss_pred cce-eEEEe------cccceeeeEEEEcCCCcEEEee-----c-CCeeEEEEcccc
Q psy18231 493 SQI-STLIH------SVGKAVVNSLCSHPTRKHIMSA-----C-GNNVKLWTAEED 535 (540)
Q Consensus 493 ~~~-~~~~~------~~~~~~v~~l~~s~d~~~l~s~-----~-d~~i~iw~~~~~ 535 (540)
+.. ..+.. ..+...+..+.|+|+|+.|..+ + |+.|.|||.+++
T Consensus 460 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~s~~~~~~~~~~i~v~D~~t~ 515 (543)
T 1nir_A 460 DAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTL 515 (543)
T ss_dssp TSCCEEECHHHHHCCCSSCCEEEEEEECSSSSEEEEEEECCTTSCCEEEEEETTTT
T ss_pred CCCeEEeechhhcccCCCCCceEeccCCCCCCEEEEEeecCCCCCCeEEEEECCCc
Confidence 887 44421 1457789999999999998865 4 699999999875
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.5e-29 Score=246.95 Aligned_cols=269 Identities=8% Similarity=0.028 Sum_probs=220.6
Q ss_pred cceeccccchhhhhhcccccceeeeecccccceee--------eeecCeEEEEeCCCCCEEEEeeCCCcEEEEcCCCCee
Q psy18231 127 PLLFSLPRTITRILYELPKEWSIRVYRPLTVNREL--------FVLSGLMHTRFPVDGSYCLTCGSDKKIKLWNPYRNLL 198 (540)
Q Consensus 127 ~~~~s~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~--------~h~~~v~~v~~spdg~~lat~~~dg~i~iwd~~~~~~ 198 (540)
.+.+++ ...+++....++.|++|+..+..... .|.+.|.+++|+|+++++++++.|+.|++||+.+++.
T Consensus 127 ~~~~s~---~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~ 203 (433)
T 3bws_A 127 SVRFID---NTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLAY 203 (433)
T ss_dssp CCEESS---SSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCCE
T ss_pred EEEEeC---CCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCceE
Confidence 344554 24556666778889999988755433 4777999999999999999999999999999999999
Q ss_pred EEEeecCCcceeEEEEeeCCCeEE-EeeCCCeEEEEEcCCCceeEeccccCCceeEEEECCCCCEEEEec--------CC
Q psy18231 199 LKTYGGHAHEVNDATAACDSSQIA-SGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGS--------QD 269 (540)
Q Consensus 199 ~~~~~~h~~~v~~l~~sp~~~~l~-s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~--------~d 269 (540)
+..+..|...+.+++|+|++++++ +++.|+.|++||+.+++.+..+..+ ..+.+++|+|+++++++++ .|
T Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~-~~~~~~~~~~~g~~l~~~~~~~~~~~~~d 282 (433)
T 3bws_A 204 KATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDKI-GLPRGLLLSKDGKELYIAQFSASNQESGG 282 (433)
T ss_dssp EEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCCC-SEEEEEEECTTSSEEEEEEEESCTTCSCC
T ss_pred EEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecCC-CCceEEEEcCCCCEEEEEECCCCccccCC
Confidence 999999999999999999999885 5557999999999999988887654 4599999999999999888 58
Q ss_pred CcEEEEEecCCCCCCcchhhhhHhhhhcCCceeEEEEeecccccccccCceeeEEEeeeecccccceeeeeeccceeEEE
Q psy18231 270 NTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVL 349 (540)
Q Consensus 270 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (540)
|.|++||+.+++. .
T Consensus 283 g~i~~~d~~~~~~--~---------------------------------------------------------------- 296 (433)
T 3bws_A 283 GRLGIYSMDKEKL--I---------------------------------------------------------------- 296 (433)
T ss_dssp EEEEEEETTTTEE--E----------------------------------------------------------------
T ss_pred CeEEEEECCCCcE--E----------------------------------------------------------------
Confidence 8999999987641 0
Q ss_pred eecccceecccccccccccchhhhhhcccccEEEEEecC--C-eeEeeeCCCeEEEEeCCCCceEEeeeC-CceEEEEEe
Q psy18231 350 LDFLGSTQIGDVTPISIHNSCFQALKEARDSITSVHVSD--H-EILTASLDCRIRRYDIRTGNLVTDYVG-EPIVDACFT 425 (540)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~--~-~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~i~~~~~s 425 (540)
....|...+.+++|+| + .+++++.|+.|++||+++++.+..+.. ..+.+++|+
T Consensus 297 -----------------------~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~s 353 (433)
T 3bws_A 297 -----------------------DTIGPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIPVFDKPNTIALS 353 (433)
T ss_dssp -----------------------EEEEEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEEC
T ss_pred -----------------------eeccCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEecCCCCCCeEEEc
Confidence 1113445677889988 3 456668999999999999988877764 679999999
Q ss_pred cCCcEEEeecC---------------CCeEEEEeccccchhhhhccCcCCcceEEEEecCCCCeEEEeeC-CCcEEEEEe
Q psy18231 426 RDCQCILTCST---------------DECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSS-DGKIYKWQL 489 (540)
Q Consensus 426 p~~~~l~~~~~---------------dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~s~~~~~l~s~s~-dg~i~iwd~ 489 (540)
|+++++++++. ||.|++||+.+++.+..+..+. .+..+ +|+|+|++|++++. |+.|++|++
T Consensus 354 ~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~~~-~~~~~--~~s~dg~~l~~~~~~d~~i~v~~~ 430 (433)
T 3bws_A 354 PDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEAGN-QPTGL--DVSPDNRYLVISDFLDHQIRVYRR 430 (433)
T ss_dssp TTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEECSS-SEEEE--EECTTSCEEEEEETTTTEEEEEEE
T ss_pred CCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEecCCC-CCceE--EEcCCCCEEEEEECCCCeEEEEEe
Confidence 99998888776 5799999999999888877643 45555 89999999988775 999999998
Q ss_pred cC
Q psy18231 490 VD 491 (540)
Q Consensus 490 ~~ 491 (540)
..
T Consensus 431 ~~ 432 (433)
T 3bws_A 431 DG 432 (433)
T ss_dssp TT
T ss_pred cC
Confidence 63
|
| >4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A | Back alignment and structure |
|---|
Probab=99.97 E-value=8.8e-30 Score=246.04 Aligned_cols=243 Identities=9% Similarity=0.058 Sum_probs=178.8
Q ss_pred hhhhhcccccceeeeecccccce--------eeeeecCeEEEEeCC--------CCCEEEEeeCCCcEEEEcCCCCeeEE
Q psy18231 137 TRILYELPKEWSIRVYRPLTVNR--------ELFVLSGLMHTRFPV--------DGSYCLTCGSDKKIKLWNPYRNLLLK 200 (540)
Q Consensus 137 ~~~~~~~~~~~~i~~~~~~~~~~--------~~~h~~~v~~v~~sp--------dg~~lat~~~dg~i~iwd~~~~~~~~ 200 (540)
...+++.+.|++|++|+...... ..+|.+.|++++|+| |+++||+|+.|++|+|||+.++.++.
T Consensus 101 ~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~~~ 180 (393)
T 4gq1_A 101 SLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEGPIL 180 (393)
T ss_dssp EEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTEEEE
T ss_pred CCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCceee
Confidence 45677889999999999876532 235999999999998 89999999999999999999988888
Q ss_pred EeecCCcceeEEEEeeCCC-eEEEeeCCCeEEEEEcCCCceeEe-------------------------ccccCCceeEE
Q psy18231 201 TYGGHAHEVNDATAACDSS-QIASGASDKSVILWEVTTGQPVRR-------------------------WREHASKVTCV 254 (540)
Q Consensus 201 ~~~~h~~~v~~l~~sp~~~-~l~s~s~dg~i~iwd~~~~~~~~~-------------------------~~~h~~~v~~~ 254 (540)
.+.+|...|.+++|+|++. +|++++.|++|++||+.+++.... ..+|...+.++
T Consensus 181 ~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v 260 (393)
T 4gq1_A 181 AGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANV 260 (393)
T ss_dssp EEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------CCSSSCSEE
T ss_pred eecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeecccccccceee
Confidence 8888999999999999874 799999999999999988754322 23577889999
Q ss_pred EEC-CCCCEEEEecCCCcEEEEEecCCCCCCcchhhhhHhhhhcCCceeEEEEeecccccccccCceeeEEEeeeecccc
Q psy18231 255 KFN-EDSSVVISGSQDNTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLN 333 (540)
Q Consensus 255 ~~~-~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (540)
.|+ ++++.|++++.|+++++||+..++.
T Consensus 261 ~~~~~dg~~l~s~s~d~~i~vwd~~~~~~--------------------------------------------------- 289 (393)
T 4gq1_A 261 RWIGSDGSGILAMCKSGAWLRWNLFANND--------------------------------------------------- 289 (393)
T ss_dssp EEETTTTCEEEEECTTSEEEEEEC--------------------------------------------------------
T ss_pred eeecCCCCEEEEEeCCCCEEEEECccCCC---------------------------------------------------
Confidence 986 7999999999999999999987652
Q ss_pred cceeeeeeccceeEEEeecccceecccccccccccchhhhhhcccccEEEEEecCCeeEeeeCCCeEEEEeCCCCceEEe
Q psy18231 334 GLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEARDSITSVHVSDHEILTASLDCRIRRYDIRTGNLVTD 413 (540)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 413 (540)
...+..|...+..+.+.+..--...
T Consensus 290 -------------------------------------~~~l~~~~~~~~~~~~~~~~~~~~~------------------ 314 (393)
T 4gq1_A 290 -------------------------------------YNEISDSTMKLGPKNLLPNVQGISL------------------ 314 (393)
T ss_dssp ---------------------------------------------------CCSCSEEEECS------------------
T ss_pred -------------------------------------CceEeeecCccccEEEccccccccc------------------
Confidence 0122233344444444442111100
Q ss_pred eeCCceEEEEEec--CCcEEEeecCCCeEEEEeccccchhhhhccCcCCcceEEEEecCCCCeEEEeeCCCcEEEEEec
Q psy18231 414 YVGEPIVDACFTR--DCQCILTCSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLV 490 (540)
Q Consensus 414 ~~~~~i~~~~~sp--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~s~~~~~l~s~s~dg~i~iwd~~ 490 (540)
........++| ++.++++|+.||.|++||+.+++.+..+..|..+|..+ +|+|||++||+++.+| +.+|++.
T Consensus 315 --~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~~V~sv--afspdG~~LA~as~~G-v~lvrL~ 388 (393)
T 4gq1_A 315 --FPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQLGMPIVDF--CWHQDGSHLAIATEGS-VLLTRLM 388 (393)
T ss_dssp --SCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCCEEEEECSSCEEEE--EECTTSSEEEEEESSE-EEEEEEG
T ss_pred --cCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEEEEecCCCCcEEEE--EEcCCCCEEEEEeCCC-eEEEEEe
Confidence 01122233343 55677888999999999999999988888899988887 9999999999998776 6666653
|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=5.7e-28 Score=241.64 Aligned_cols=281 Identities=10% Similarity=0.087 Sum_probs=219.8
Q ss_pred EeCCCCCEEEEeeCCCcEEEEcCCCCeeEEEeecCCcceeEEEEeeCCCeEEEeeCCCeEEEEEc--CCCceeEeccccC
Q psy18231 171 RFPVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEV--TTGQPVRRWREHA 248 (540)
Q Consensus 171 ~~spdg~~lat~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~--~~~~~~~~~~~h~ 248 (540)
+|+|++.++++++.|++|.+||..+++++.++..+.. +.+++|+|||++|++++.|++|.+||+ .+++.+..+. +.
T Consensus 144 ~~~p~~~~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~-~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~-~g 221 (543)
T 1nir_A 144 DLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYA-VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIK-IG 221 (543)
T ss_dssp CCCGGGEEEEEEGGGTEEEEEETTTCCEEEEEECSTT-EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEE-CC
T ss_pred ccCCCCEEEEEEcCCCeEEEEECCCceEEEEEecCcc-cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEe-cC
Confidence 4899999999999999999999999999999984333 889999999999999999999999999 8888888886 45
Q ss_pred CceeEEEECC----CCCEEEEecC-CCcEEEEEecCCCCCCcchhhhhHhhhhcCCceeEEEEeecccccccccCceeeE
Q psy18231 249 SKVTCVKFNE----DSSVVISGSQ-DNTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHLSNGLLTKL 323 (540)
Q Consensus 249 ~~v~~~~~~~----~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (540)
..+..++|+| +|+++++++. +++|.+||..+.+.....
T Consensus 222 ~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i------------------------------------- 264 (543)
T 1nir_A 222 IEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIV------------------------------------- 264 (543)
T ss_dssp SEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEE-------------------------------------
T ss_pred CCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceee-------------------------------------
Confidence 6689999999 9999999885 899999998876521000
Q ss_pred EEeeeecccccceeeeeeccceeEEEeecccceecccccccccccchhhhhhccc-ccEEEEEecC---CeeEeeeCCCe
Q psy18231 324 VFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEAR-DSITSVHVSD---HEILTASLDCR 399 (540)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~l~~~~---~~l~~~~~dg~ 399 (540)
... +........|. ..+.++.+++ .++++...++.
T Consensus 265 ---------------------------~~~--------------g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~ 303 (543)
T 1nir_A 265 ---------------------------STR--------------GMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGK 303 (543)
T ss_dssp ---------------------------ECC--------------EECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTE
T ss_pred ---------------------------ccc--------------CcccCccccccCCceEEEEECCCCCEEEEEECCCCe
Confidence 000 00000001122 3678888887 45677788999
Q ss_pred EEEEeCCCCceEE--eee-CCceEEEEEecCCcEEEee-cCCCeEEEEeccccchhhhhcc----CcCCcceEEEEecCC
Q psy18231 400 IRRYDIRTGNLVT--DYV-GEPIVDACFTRDCQCILTC-STDECLRLFDKATGELLEEYKG----HKSGDFRIECCLDSK 471 (540)
Q Consensus 400 i~iwd~~~~~~~~--~~~-~~~i~~~~~sp~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~----~~~~v~~~~~~~s~~ 471 (540)
|.+||..+.+.+. .+. +..+..+.|+|+|++++++ ..+++|.+||..+++++..+.. |.+.. ..+ ++|+
T Consensus 304 i~vvd~~~~~~l~~~~i~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g--~~~-~~p~ 380 (543)
T 1nir_A 304 VLLVNYKDIDNLTVTSIGAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRG--ANF-VHPK 380 (543)
T ss_dssp EEEEECTTSSSCEEEEEECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTC--EEE-EETT
T ss_pred EEEEEecCCCcceeEEeccCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCC--ccc-CCCC
Confidence 9999998876443 333 3568889999999977655 4689999999999998887764 44322 322 4677
Q ss_pred -CCeEEEee-CCCcEEEEEecC-------CcceeEEEecccceeeeEEEEcCCCcEEEeec--------CCeeEEEEccc
Q psy18231 472 -DSQIFCGS-SDGKIYKWQLVD-------SSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC--------GNNVKLWTAEE 534 (540)
Q Consensus 472 -~~~l~s~s-~dg~i~iwd~~~-------~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~--------d~~i~iw~~~~ 534 (540)
+..++++. .|++|.+||+.+ .+.++++. .|...+..++|+||+++|++++ +++|.+||+++
T Consensus 381 ~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~--~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~ 458 (543)
T 1nir_A 381 YGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQ--GQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKN 458 (543)
T ss_dssp TEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEE--CSCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTC
T ss_pred CccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEE--cCCCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCC
Confidence 66677765 689999999988 88899998 7888889999999999999986 56999999986
Q ss_pred cc
Q psy18231 535 DY 536 (540)
Q Consensus 535 ~~ 536 (540)
..
T Consensus 459 ~~ 460 (543)
T 1nir_A 459 LD 460 (543)
T ss_dssp TT
T ss_pred CC
Confidence 54
|
| >2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A | Back alignment and structure |
|---|
Probab=99.96 E-value=6.7e-28 Score=234.14 Aligned_cols=272 Identities=12% Similarity=0.047 Sum_probs=213.1
Q ss_pred eeeeecc--cccce-----eeeeecCeEEEEeCC--------------CCCEEEEeeCC------CcEEEEcCCCCeeEE
Q psy18231 148 SIRVYRP--LTVNR-----ELFVLSGLMHTRFPV--------------DGSYCLTCGSD------KKIKLWNPYRNLLLK 200 (540)
Q Consensus 148 ~i~~~~~--~~~~~-----~~~h~~~v~~v~~sp--------------dg~~lat~~~d------g~i~iwd~~~~~~~~ 200 (540)
++++|+. .+... ..+|...+..+++++ .+..++.++.+ +.|++||+. +....
T Consensus 94 ~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~-g~~~~ 172 (415)
T 2hqs_A 94 AYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYD-GYNQF 172 (415)
T ss_dssp EEEEEECSSSTTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEETT-SCSCE
T ss_pred EEEEEeCCCCCCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcCC-CCCCE
Confidence 8999999 66543 345777788777775 25566665544 799999986 45567
Q ss_pred EeecCCcceeEEEEeeCCCeEEEeeCCC---eEEEEEcCCCceeEeccccCCceeEEEECCCCCEEE-EecCCCc--EEE
Q psy18231 201 TYGGHAHEVNDATAACDSSQIASGASDK---SVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVI-SGSQDNT--VMM 274 (540)
Q Consensus 201 ~~~~h~~~v~~l~~sp~~~~l~s~s~dg---~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~-s~~~dg~--i~i 274 (540)
.+.+|...|.+++|+|||++|++++.++ .|++||+.+++.. .+..|...+.+++|+|||++|+ +++.|+. |++
T Consensus 173 ~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~-~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~ 251 (415)
T 2hqs_A 173 VVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR-QVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYV 251 (415)
T ss_dssp EEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE-EEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEE
T ss_pred EEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEE-EeecCCCcccCEEEcCCCCEEEEEEecCCCceEEE
Confidence 7888999999999999999999999885 9999999998875 4667888999999999999887 6666655 899
Q ss_pred EEecCCCCCCcchhhhhHhhhhcCCceeEEEEeecccccccccCceeeEEEeeeecccccceeeeeeccceeEEEeeccc
Q psy18231 275 WDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLG 354 (540)
Q Consensus 275 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (540)
||+.+++.
T Consensus 252 ~d~~~~~~------------------------------------------------------------------------ 259 (415)
T 2hqs_A 252 MDLASGQI------------------------------------------------------------------------ 259 (415)
T ss_dssp EETTTCCE------------------------------------------------------------------------
T ss_pred EECCCCCE------------------------------------------------------------------------
Confidence 99877651
Q ss_pred ceecccccccccccchhhhhhcccccEEEEEecC--CeeEeeeC-CC--eEEEEeCCCCceEEe-eeCCceEEEEEecCC
Q psy18231 355 STQIGDVTPISIHNSCFQALKEARDSITSVHVSD--HEILTASL-DC--RIRRYDIRTGNLVTD-YVGEPIVDACFTRDC 428 (540)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~--~~l~~~~~-dg--~i~iwd~~~~~~~~~-~~~~~i~~~~~sp~~ 428 (540)
..+..|...+.+++|+| +.|++++. ++ .|.+||+.+++.... ..+..+.+++|+|+|
T Consensus 260 -----------------~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~~~l~~~~~~~~~~~~spdG 322 (415)
T 2hqs_A 260 -----------------RQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDADVSSDG 322 (415)
T ss_dssp -----------------EECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEECCCSSSEEEEEEECTTS
T ss_pred -----------------EeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCCEEEEecCCCcccCeEECCCC
Confidence 13345667889999998 66777765 44 688889988775432 234678899999999
Q ss_pred cEEEeecCC---CeEEEEeccccchhhhhccCcCCcceEEEEecCCCCeEEEeeCCC---cEEEEEecCCcceeEEEecc
Q psy18231 429 QCILTCSTD---ECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDG---KIYKWQLVDSSQISTLIHSV 502 (540)
Q Consensus 429 ~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~s~~~~~l~s~s~dg---~i~iwd~~~~~~~~~~~~~~ 502 (540)
++|++++.+ ..|++||+.+++.. .+..+. .+..+ +|+|+|++|++++.++ .|++||+. ++....+. .
T Consensus 323 ~~l~~~~~~~g~~~i~~~d~~~~~~~-~l~~~~-~~~~~--~~spdg~~l~~~s~~~~~~~l~~~d~~-g~~~~~l~--~ 395 (415)
T 2hqs_A 323 KFMVMVSSNGGQQHIAKQDLATGGVQ-VLSSTF-LDETP--SLAPNGTMVIYSSSQGMGSVLNLVSTD-GRFKARLP--A 395 (415)
T ss_dssp SEEEEEEECSSCEEEEEEETTTCCEE-ECCCSS-SCEEE--EECTTSSEEEEEEEETTEEEEEEEETT-SCCEEECC--C
T ss_pred CEEEEEECcCCceEEEEEECCCCCEE-EecCCC-CcCCe--EEcCCCCEEEEEEcCCCccEEEEEECC-CCcEEEee--C
Confidence 999988764 58999999988763 455454 55555 8999999999988877 79999975 66667776 8
Q ss_pred cceeeeEEEEcCCCc
Q psy18231 503 GKAVVNSLCSHPTRK 517 (540)
Q Consensus 503 ~~~~v~~l~~s~d~~ 517 (540)
|.+.|.+++|+|...
T Consensus 396 ~~~~v~~~~~~~~~~ 410 (415)
T 2hqs_A 396 TDGQVKFPAWSPYLH 410 (415)
T ss_dssp SSSEEEEEEECCCCC
T ss_pred CCCCCcCCccccccc
Confidence 999999999999754
|
| >2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A | Back alignment and structure |
|---|
Probab=99.96 E-value=2.6e-28 Score=236.98 Aligned_cols=275 Identities=11% Similarity=0.056 Sum_probs=212.6
Q ss_pred eecCeEEEEeCCCCC-EEEEee----CCC----cEEEEcC--CCCeeE--EEeecCCcceeEEEEee-------------
Q psy18231 163 VLSGLMHTRFPVDGS-YCLTCG----SDK----KIKLWNP--YRNLLL--KTYGGHAHEVNDATAAC------------- 216 (540)
Q Consensus 163 h~~~v~~v~~spdg~-~lat~~----~dg----~i~iwd~--~~~~~~--~~~~~h~~~v~~l~~sp------------- 216 (540)
+...+....|++.|. ++++|+ .+| +++|||+ .+++.+ ..+.+|...+..+++++
T Consensus 61 ~~~~~~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~ 140 (415)
T 2hqs_A 61 SAQEVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKG 140 (415)
T ss_dssp SGGGCCHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCC
T ss_pred cccCcCHHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCC
Confidence 345778888888775 555775 467 9999999 898877 45888998888888775
Q ss_pred -CCCeEEEeeCC------CeEEEEEcCCCceeEeccccCCceeEEEECCCCCEEEEecCCC---cEEEEEecCCCCCCcc
Q psy18231 217 -DSSQIASGASD------KSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDN---TVMMWDVKSRSHHPIQ 286 (540)
Q Consensus 217 -~~~~l~s~s~d------g~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg---~i~iwd~~~~~~~~~~ 286 (540)
.+..++.++.+ ++|++||+. +.....+..|...+.+++|+|+|++|++++.++ .|++||+.+++..
T Consensus 141 ~~~~~l~~~s~~~~~~~~~~i~i~d~~-g~~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~--- 216 (415)
T 2hqs_A 141 AFRTRIAYVVQTNGGQFPYELRVSDYD-GYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR--- 216 (415)
T ss_dssp CTTCEEEEEEECSSSSCCEEEEEEETT-SCSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE---
T ss_pred cCCCEEEEEEecCCCCccceEEEEcCC-CCCCEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEE---
Confidence 15667766654 799999996 455677788999999999999999999999875 9999999877520
Q ss_pred hhhhhHhhhhcCCceeEEEEeecccccccccCceeeEEEeeeecccccceeeeeeccceeEEEeecccceeccccccccc
Q psy18231 287 VRCLNEALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISI 366 (540)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (540)
T Consensus 217 -------------------------------------------------------------------------------- 216 (415)
T 2hqs_A 217 -------------------------------------------------------------------------------- 216 (415)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccchhhhhhcccccEEEEEecC--CeeE-eeeCCCe--EEEEeCCCCceEEeeeC--CceEEEEEecCCcEEEeecC-CC
Q psy18231 367 HNSCFQALKEARDSITSVHVSD--HEIL-TASLDCR--IRRYDIRTGNLVTDYVG--EPIVDACFTRDCQCILTCST-DE 438 (540)
Q Consensus 367 ~~~~~~~~~~~~~~v~~l~~~~--~~l~-~~~~dg~--i~iwd~~~~~~~~~~~~--~~i~~~~~sp~~~~l~~~~~-dg 438 (540)
.+..|...+.+++|+| +.|+ +++.++. |++||+++++.. .+.. ..+.+++|+|||++|++++. ++
T Consensus 217 ------~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~~-~l~~~~~~~~~~~~spdg~~l~~~s~~~g 289 (415)
T 2hqs_A 217 ------QVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIR-QVTDGRSNNTEPTWFPDSQNLAFTSDQAG 289 (415)
T ss_dssp ------EEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE-ECCCCSSCEEEEEECTTSSEEEEEECTTS
T ss_pred ------EeecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCEE-eCcCCCCcccceEECCCCCEEEEEECCCC
Confidence 2234566788999998 5566 6666554 999999988764 3333 57899999999999988876 44
Q ss_pred --eEEEEeccccchhhhhccCcCCcceEEEEecCCCCeEEEeeCC---CcEEEEEecCCcceeEEEecccceeeeEEEEc
Q psy18231 439 --CLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSD---GKIYKWQLVDSSQISTLIHSVGKAVVNSLCSH 513 (540)
Q Consensus 439 --~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~s~~~~~l~s~s~d---g~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s 513 (540)
.|++||+.+++. ..+..+...+..+ +|+|+|++|++++.+ ..|++||+.+++.. .+. .+. .+.+++|+
T Consensus 290 ~~~i~~~d~~~~~~-~~l~~~~~~~~~~--~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~-~l~--~~~-~~~~~~~s 362 (415)
T 2hqs_A 290 RPQVYKVNINGGAP-QRITWEGSQNQDA--DVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLS--STF-LDETPSLA 362 (415)
T ss_dssp SCEEEEEETTSSCC-EECCCSSSEEEEE--EECTTSSEEEEEEECSSCEEEEEEETTTCCEE-ECC--CSS-SCEEEEEC
T ss_pred CcEEEEEECCCCCE-EEEecCCCcccCe--EECCCCCEEEEEECcCCceEEEEEECCCCCEE-Eec--CCC-CcCCeEEc
Confidence 688889887764 3344455545444 899999999988764 58999999888763 444 443 89999999
Q ss_pred CCCcEEEeec-CC---eeEEEEcccc
Q psy18231 514 PTRKHIMSAC-GN---NVKLWTAEED 535 (540)
Q Consensus 514 ~d~~~l~s~~-d~---~i~iw~~~~~ 535 (540)
|||++|++++ |+ .|++|++.++
T Consensus 363 pdg~~l~~~s~~~~~~~l~~~d~~g~ 388 (415)
T 2hqs_A 363 PNGTMVIYSSSQGMGSVLNLVSTDGR 388 (415)
T ss_dssp TTSSEEEEEEEETTEEEEEEEETTSC
T ss_pred CCCCEEEEEEcCCCccEEEEEECCCC
Confidence 9999999988 66 7999998754
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=99.95 E-value=9.8e-27 Score=244.54 Aligned_cols=291 Identities=12% Similarity=0.035 Sum_probs=214.7
Q ss_pred ecCeEEEEeCCCCCEEEEeeC-CC-----cEEEEcCCCCeeEEEeecCCc------------------------ceeEEE
Q psy18231 164 LSGLMHTRFPVDGSYCLTCGS-DK-----KIKLWNPYRNLLLKTYGGHAH------------------------EVNDAT 213 (540)
Q Consensus 164 ~~~v~~v~~spdg~~lat~~~-dg-----~i~iwd~~~~~~~~~~~~h~~------------------------~v~~l~ 213 (540)
...+.+++|||||++|++++. |+ .|++||+.+++....+..+.. .|.+++
T Consensus 36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 115 (741)
T 2ecf_A 36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQ 115 (741)
T ss_dssp CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCE
T ss_pred CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeE
Confidence 457899999999999999988 88 999999999988777765433 388999
Q ss_pred EeeCCCeEEEeeCCCeEEEEEcCCCc--eeEeccccCCceeEEEECCCCCEEEEecCCCcEEEEEecCCCCCCcchhhhh
Q psy18231 214 AACDSSQIASGASDKSVILWEVTTGQ--PVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQVRCLN 291 (540)
Q Consensus 214 ~sp~~~~l~s~s~dg~i~iwd~~~~~--~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 291 (540)
|||||++|++++. +.|.+||+.++. ....+..|...+..++|+|||++|++++ ++.|.+||+.+++...+...
T Consensus 116 ~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~g~~~~~~~~--- 190 (741)
T 2ecf_A 116 WSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIR-GRNLWVIDLASGRQMQLTAD--- 190 (741)
T ss_dssp ECTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEE-TTEEEEEETTTTEEEECCCC---
T ss_pred ECCCCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEe-CCcEEEEecCCCCEEEeccC---
Confidence 9999999999987 999999998883 4455777888999999999999999987 56999999987652111000
Q ss_pred HhhhhcCCceeEEEEeecccccccccCceeeEEEeeeecccccceeeeeeccceeEEEeecccceecccccccccccchh
Q psy18231 292 EALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCF 371 (540)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (540)
. ...+ .. +. ..
T Consensus 191 -------------------~--------------------------------~~~~-~~---g~--------------~~ 201 (741)
T 2ecf_A 191 -------------------G--------------------------------STTI-GN---GI--------------AE 201 (741)
T ss_dssp -------------------C--------------------------------CSSE-EE---SC--------------CC
T ss_pred -------------------C--------------------------------ccce-ec---cc--------------cc
Confidence 0 0000 00 00 00
Q ss_pred hhhhcccccEEEEEecC--CeeEeeeCCC---------------------------------eEEEEeCCC-CceEEeee
Q psy18231 372 QALKEARDSITSVHVSD--HEILTASLDC---------------------------------RIRRYDIRT-GNLVTDYV 415 (540)
Q Consensus 372 ~~~~~~~~~v~~l~~~~--~~l~~~~~dg---------------------------------~i~iwd~~~-~~~~~~~~ 415 (540)
.........+.+++|+| +.|++++.|+ .|++||+.+ ++......
T Consensus 202 ~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~ 281 (741)
T 2ecf_A 202 FVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPAEQAQTQWIDL 281 (741)
T ss_dssp HHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSSTTCCCEEECC
T ss_pred eeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECCCCCceEEecC
Confidence 00011123356788888 6677776655 789999998 77654432
Q ss_pred ----CCceEEEEEecCCcEEEeecC-----CCeEEEEeccccchhhhhccCcC----CcceEEEEecCCCCeEEEeeCCC
Q psy18231 416 ----GEPIVDACFTRDCQCILTCST-----DECLRLFDKATGELLEEYKGHKS----GDFRIECCLDSKDSQIFCGSSDG 482 (540)
Q Consensus 416 ----~~~i~~~~~sp~~~~l~~~~~-----dg~i~i~d~~~~~~~~~~~~~~~----~v~~~~~~~s~~~~~l~s~s~dg 482 (540)
...+..++| |||++|++++. +..|++||+.+++....+..+.. .+..+ +|+|||+++++++.||
T Consensus 282 ~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~--~~spdg~~~~~~~~~g 358 (741)
T 2ecf_A 282 GKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSL--RFLDDGSILWSSERTG 358 (741)
T ss_dssp CSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCC--EECTTSCEEEEECTTS
T ss_pred CCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCce--EECCCCeEEEEecCCC
Confidence 246899999 99999987653 67899999999887766665543 23445 8999999999999999
Q ss_pred cEEEEEec-CCcceeEEEecccceeeeEE-EEcCCCcEEEe-ec-CC--eeEEEEccc
Q psy18231 483 KIYKWQLV-DSSQISTLIHSVGKAVVNSL-CSHPTRKHIMS-AC-GN--NVKLWTAEE 534 (540)
Q Consensus 483 ~i~iwd~~-~~~~~~~~~~~~~~~~v~~l-~~s~d~~~l~s-~~-d~--~i~iw~~~~ 534 (540)
.+++|.+. +++ ...+. .|...+..+ .|+||++.|+. ++ ++ .++||+++.
T Consensus 359 ~~~l~~~~~~~~-~~~l~--~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~ 413 (741)
T 2ecf_A 359 FQHLYRIDSKGK-AAALT--HGNWSVDELLAVDEKAGLAYFRAGIESARESQIYAVPL 413 (741)
T ss_dssp SCEEEEECSSSC-EEESC--CSSSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEET
T ss_pred ccEEEEEcCCCC-eeeee--ecceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEEc
Confidence 88888876 445 56665 677778887 59999987765 44 55 899999864
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=99.95 E-value=3.1e-26 Score=240.77 Aligned_cols=307 Identities=9% Similarity=0.032 Sum_probs=205.9
Q ss_pred CeEEEEeCCCCCEEEEeeCCCcEEEEcCCCCe--eEEEeecCCcceeEEEEeeCCCeEEEeeCCCeEEEEEcCCCceeEe
Q psy18231 166 GLMHTRFPVDGSYCLTCGSDKKIKLWNPYRNL--LLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPVRR 243 (540)
Q Consensus 166 ~v~~v~~spdg~~lat~~~dg~i~iwd~~~~~--~~~~~~~h~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~ 243 (540)
.|.+++|||||++|++++. +.|.+||+.++. ....+..|...+.+++|||||++|+.++. +.|.+||+.+++....
T Consensus 110 ~v~~~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~~-~~i~~~d~~~g~~~~~ 187 (741)
T 2ecf_A 110 GIVDYQWSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIRG-RNLWVIDLASGRQMQL 187 (741)
T ss_dssp ESCCCEECTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEET-TEEEEEETTTTEEEEC
T ss_pred CcceeEECCCCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEeC-CcEEEEecCCCCEEEe
Confidence 3889999999999999885 999999998873 44557778889999999999999999874 6999999998877665
Q ss_pred ccccCCc----------------eeEEEECCCCCEEEEecCCC-cEEEEEecCCCCCCcchhhhhHhhhhcCCceeEEEE
Q psy18231 244 WREHASK----------------VTCVKFNEDSSVVISGSQDN-TVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHS 306 (540)
Q Consensus 244 ~~~h~~~----------------v~~~~~~~~~~~l~s~~~dg-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (540)
...+... +..++|+|||++|++++.|+ .+..|+..... +. ......
T Consensus 188 ~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~--p~---------------~~~~~~ 250 (741)
T 2ecf_A 188 TADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVY--AD---------------RTDVIE 250 (741)
T ss_dssp CCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEEC--SS---------------CEEEEE
T ss_pred ccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCC--CC---------------cccceE
Confidence 5444432 47899999999999887654 33333311000 00 000000
Q ss_pred eecccccccccCceeeEEEeeeecccccceeeeeeccceeEEEeeccc-ceecccccccccccchhhhhhcccccEEEEE
Q psy18231 307 LVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLG-STQIGDVTPISIHNSCFQALKEARDSITSVH 385 (540)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~ 385 (540)
+.....+. ......+.+++..+ ..... +.....|...+..++
T Consensus 251 ~~~~~~g~--------------------------~~~~~~l~~~d~~~~~~~~~-----------~~~~~~~~~~~~~~~ 293 (741)
T 2ecf_A 251 QRYPAAGD--------------------------ANVQVKLGVISPAEQAQTQW-----------IDLGKEQDIYLARVN 293 (741)
T ss_dssp EECCBTTS--------------------------CCCEEEEEEECSSTTCCCEE-----------ECCCSCSSEEEEEEE
T ss_pred eecCCCCC--------------------------CCCeeEEEEEECCCCCceEE-----------ecCCCCcceEEEEEE
Confidence 00000000 00011222222221 11000 000114667888999
Q ss_pred ecC--CeeEeeeC-----CCeEEEEeCCCCceEEeeeCC------ceEEEEEecCCcEEEeecCCCeEEEEecc-ccchh
Q psy18231 386 VSD--HEILTASL-----DCRIRRYDIRTGNLVTDYVGE------PIVDACFTRDCQCILTCSTDECLRLFDKA-TGELL 451 (540)
Q Consensus 386 ~~~--~~l~~~~~-----dg~i~iwd~~~~~~~~~~~~~------~i~~~~~sp~~~~l~~~~~dg~i~i~d~~-~~~~~ 451 (540)
| | +.|++++. +..|++||+.+++....+..+ .+..++|+|||+++++++.||.++||.+. +++ .
T Consensus 294 ~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~~~~~~-~ 371 (741)
T 2ecf_A 294 W-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLRFLDDGSILWSSERTGFQHLYRIDSKGK-A 371 (741)
T ss_dssp E-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCEECTTSCEEEEECTTSSCEEEEECSSSC-E
T ss_pred e-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCceEECCCCeEEEEecCCCccEEEEEcCCCC-e
Confidence 9 8 66775543 578999999999876655431 45689999999999999999988887665 344 6
Q ss_pred hhhccCcCCcceEEEEecCCCCeEE-EeeCCC--cEEEEEecC-CcceeEEEecccceeeeEEEEcCCCcEEEeec-C--
Q psy18231 452 EEYKGHKSGDFRIECCLDSKDSQIF-CGSSDG--KIYKWQLVD-SSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC-G-- 524 (540)
Q Consensus 452 ~~~~~~~~~v~~~~~~~s~~~~~l~-s~s~dg--~i~iwd~~~-~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~-d-- 524 (540)
..+..|...+..+. .|+|+|+.|+ +++.++ .+++|++.. ++....+. . ...+..++|||||++|+... +
T Consensus 372 ~~l~~~~~~v~~~~-~~s~dg~~l~~~~~~~~~~~~~l~~~~~~g~~~~~l~--~-~~~~~~~~~spdg~~l~~~~~~~~ 447 (741)
T 2ecf_A 372 AALTHGNWSVDELL-AVDEKAGLAYFRAGIESARESQIYAVPLQGGQPQRLS--K-APGMHSASFARNASVYVDSWSNNS 447 (741)
T ss_dssp EESCCSSSCEEEEE-EEETTTTEEEEEECSSCTTCBEEEEEETTCCCCEECC--C-SCSEEEEEECTTSSEEEEEEEETT
T ss_pred eeeeecceEEEeEe-EEeCCCCEEEEEEeCCCCceEEEEEEEcCCCCeeecc--c-CCCceEEEECCCCCEEEEEecCCC
Confidence 67777766665441 5999999875 455555 899999875 56566665 3 56688999999999988765 3
Q ss_pred --CeeEEEEccc
Q psy18231 525 --NNVKLWTAEE 534 (540)
Q Consensus 525 --~~i~iw~~~~ 534 (540)
..+.+|+..+
T Consensus 448 ~p~~~~l~~~~~ 459 (741)
T 2ecf_A 448 TPPQIELFRANG 459 (741)
T ss_dssp EEEEEEEEETTS
T ss_pred CCCeEEEEEcCC
Confidence 4788888653
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
Probab=99.95 E-value=4.1e-25 Score=208.61 Aligned_cols=273 Identities=12% Similarity=0.201 Sum_probs=198.7
Q ss_pred EEeCCCCCE-EEEeeCCCcEEEEcCCCCeeEEEeecCCcceeEEEEeeCCCeEEEeeC-CCeEEEEEcCCCce-eEeccc
Q psy18231 170 TRFPVDGSY-CLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGAS-DKSVILWEVTTGQP-VRRWRE 246 (540)
Q Consensus 170 v~~spdg~~-lat~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~-dg~i~iwd~~~~~~-~~~~~~ 246 (540)
..|.+++++ +++.+.++.|.+||..+++.+..+..+...+ .++|+|+++++++++. ++.|.+||+.+++. ...+..
T Consensus 3 ~~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~ 81 (331)
T 3u4y_A 3 AMFQTTSNFGIVVEQHLRRISFFSTDTLEILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQE 81 (331)
T ss_dssp ----CCCCEEEEEEGGGTEEEEEETTTCCEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEE
T ss_pred eeEcCCCCEEEEEecCCCeEEEEeCcccceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEeccc
Confidence 346666555 6677889999999999999988888777777 9999999997766665 88999999999987 777777
Q ss_pred cCCceeEEEECCCCCEEEEecCCC---cEEEEEecCCCCCCcchhhhhHhhhhcCCceeEEEEeecccccccccCceeeE
Q psy18231 247 HASKVTCVKFNEDSSVVISGSQDN---TVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHLSNGLLTKL 323 (540)
Q Consensus 247 h~~~v~~~~~~~~~~~l~s~~~dg---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (540)
+..+..+++|+|++++++++..++ .|.+||+.+++. ..
T Consensus 82 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~--~~------------------------------------- 122 (331)
T 3u4y_A 82 GQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKF--IS------------------------------------- 122 (331)
T ss_dssp CSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEE--EE-------------------------------------
T ss_pred CCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCe--EE-------------------------------------
Confidence 777666699999999999665553 899999987651 00
Q ss_pred EEeeeecccccceeeeeeccceeEEEeecccceecccccccccccchhhhhhcccccEEEEEecC--CeeEe-eeCCCe-
Q psy18231 324 VFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEARDSITSVHVSD--HEILT-ASLDCR- 399 (540)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~--~~l~~-~~~dg~- 399 (540)
.+ .......+++|+| +.+++ ...++.
T Consensus 123 -------------------------------------------------~~-~~~~~~~~~~~spdg~~l~~~~~~~~~~ 152 (331)
T 3u4y_A 123 -------------------------------------------------TI-PIPYDAVGIAISPNGNGLILIDRSSANT 152 (331)
T ss_dssp -------------------------------------------------EE-ECCTTEEEEEECTTSSCEEEEEETTTTE
T ss_pred -------------------------------------------------EE-ECCCCccceEECCCCCEEEEEecCCCce
Confidence 00 1123447889998 44544 455678
Q ss_pred EEEEeCCCCceEE-----eee-CCceEEEEEecCCcEEEe-ecCCCeEEEEeccccch---hhhhccCcCCcceEEEEec
Q psy18231 400 IRRYDIRTGNLVT-----DYV-GEPIVDACFTRDCQCILT-CSTDECLRLFDKATGEL---LEEYKGHKSGDFRIECCLD 469 (540)
Q Consensus 400 i~iwd~~~~~~~~-----~~~-~~~i~~~~~sp~~~~l~~-~~~dg~i~i~d~~~~~~---~~~~~~~~~~v~~~~~~~s 469 (540)
|.+|++.....+. .+. +.....++|+|+|+++++ +..++.|++||+.+++. +..+..+ ..+..+ +|+
T Consensus 153 i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~~-~~~~~~--~~s 229 (331)
T 3u4y_A 153 VRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVGTN-NLPGTI--VVS 229 (331)
T ss_dssp EEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEECS-SCCCCE--EEC
T ss_pred EEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeeccCC-CCCceE--EEC
Confidence 9999988644331 112 356899999999996554 55689999999999887 6666644 334555 899
Q ss_pred CCCCeEEEee-CCCcEEEEEecCCcc--eeEEEec--ccce---eeeEEEEcCCCcEEEeec--CCeeEEEEcccc
Q psy18231 470 SKDSQIFCGS-SDGKIYKWQLVDSSQ--ISTLIHS--VGKA---VVNSLCSHPTRKHIMSAC--GNNVKLWTAEED 535 (540)
Q Consensus 470 ~~~~~l~s~s-~dg~i~iwd~~~~~~--~~~~~~~--~~~~---~v~~l~~s~d~~~l~s~~--d~~i~iw~~~~~ 535 (540)
|||++|+.++ .++.|.+||+.+++. +..+... .+.. ....++|+|||++|++++ ++.|.+|++.+.
T Consensus 230 pdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~ 305 (331)
T 3u4y_A 230 RDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISRELKVFTISGK 305 (331)
T ss_dssp TTSSEEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEETTSC
T ss_pred CCCCEEEEEEcCCCEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEEEEecCCCCcEEEEEecCC
Confidence 9999776554 578899999998877 4444311 1122 235689999999886655 779999999754
|
| >1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.9e-25 Score=242.47 Aligned_cols=343 Identities=10% Similarity=-0.015 Sum_probs=225.6
Q ss_pred ceeeeecccccc--eeeeeecCeEEEEeCCCCCEEEEeeCC------CcEEEEcCCCCeeEEEeecCCcce-------eE
Q psy18231 147 WSIRVYRPLTVN--RELFVLSGLMHTRFPVDGSYCLTCGSD------KKIKLWNPYRNLLLKTYGGHAHEV-------ND 211 (540)
Q Consensus 147 ~~i~~~~~~~~~--~~~~h~~~v~~v~~spdg~~lat~~~d------g~i~iwd~~~~~~~~~~~~h~~~v-------~~ 211 (540)
..|.+|+..... +...|.+.+.+++|||||++||.++.+ ..|.+||+.+++ ...+..|...+ .+
T Consensus 33 ~~l~~~~~~gg~~~~lt~~~~~v~~~~~SPDG~~la~~s~~~~~~~~~~i~~~d~~~g~-~~~lt~~~~~~~~~~~~~~~ 111 (1045)
T 1k32_A 33 DDLWEHDLKSGSTRKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGE-IKRITYFSGKSTGRRMFTDV 111 (1045)
T ss_dssp TEEEEEETTTCCEEEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTE-EEECCCCCEEEETTEECSEE
T ss_pred CcEEEEECCCCcEEEeeeCCCcccCeEECCCCCEEEEEEeeccCCCCCeEEEEECCCCC-eEEcccCCCccccccccccc
Confidence 478888876543 445688999999999999999987543 489999998876 57788898888 99
Q ss_pred EEEeeCCCeEEEeeCC------CeEEEEEcCCCceeEec-----------------------------------------
Q psy18231 212 ATAACDSSQIASGASD------KSVILWEVTTGQPVRRW----------------------------------------- 244 (540)
Q Consensus 212 l~~sp~~~~l~s~s~d------g~i~iwd~~~~~~~~~~----------------------------------------- 244 (540)
++|+|||+++++++.+ ..|.+|++.+++.....
T Consensus 112 ~~~SpDg~ll~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~spG~l~~~~~~~~~~~~~~~~g~~~~~lw~~~ 191 (1045)
T 1k32_A 112 AGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFVPLNLGPATHILFADGRRVIGRNTFELPHWKGYRGGTRGKIWIEV 191 (1045)
T ss_dssp EEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEECCSCSCSEEEEETTEEEEEESCSCCTTSTTCCSTTCCEEEEEE
T ss_pred ccCCCCCEEEEEECCcCCCcccceEEEEECCCCCeEEecCCCcceeeeCCCEEEEeccCCCccccccccCCCcCCEEEEC
Confidence 9999999977777754 35788887666533211
Q ss_pred --------cccCCceeEEEECCCCCEEEEecCCCcEEEEEecCCCCCCcchhhhhHhhhhcCCceeEEEEeecccccccc
Q psy18231 245 --------REHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHLS 316 (540)
Q Consensus 245 --------~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (540)
.+|...+.++.|+++ .++++++.|+.+.+|.+........... ...
T Consensus 192 ~~~~~~~l~~~~~~v~~~~~s~d-~l~~~~~~dg~~~l~~~~~~g~~~~~l~-------~~~------------------ 245 (1045)
T 1k32_A 192 NSGAFKKIVDMSTHVSSPVIVGH-RIYFITDIDGFGQIYSTDLDGKDLRKHT-------SFT------------------ 245 (1045)
T ss_dssp ETTEEEEEECCSSCCEEEEEETT-EEEEEECTTSSCEEEEEETTSCSCEECC-------CCC------------------
T ss_pred CCCCeEECcCCCCcccceEEeCC-EEEEEEeccCceEEEEEeCCCCcceEec-------CCC------------------
Confidence 234445555555555 4444555556666665543110000000 000
Q ss_pred cCceeeEEEeeeecccccceeeeeeccceeEEEeecccceecccccccccccchhhhhhcccccEEEEEec-C--CeeEe
Q psy18231 317 NGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEARDSITSVHVS-D--HEILT 393 (540)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~-~--~~l~~ 393 (540)
......+..+.. .+.+..++.+.+++..+. .+..+... ..........|...+.+++|+ | +.+++
T Consensus 246 --~~~~~~~SpDG~-------~la~~~~~~i~~~d~~~~-~l~~l~~~--~~~~~~~~~~~~~~v~~~~~S~pdG~~la~ 313 (1045)
T 1k32_A 246 --DYYPRHLNTDGR-------RILFSKGGSIYIFNPDTE-KIEKIEIG--DLESPEDRIISIPSKFAEDFSPLDGDLIAF 313 (1045)
T ss_dssp --SSCEEEEEESSS-------CEEEEETTEEEEECTTTC-CEEECCCC--CCCBCCSEEEECGGGGEEEEEECGGGCEEE
T ss_pred --CcceeeEcCCCC-------EEEEEeCCEEEEecCCce-EeeeeccC--cccccccccccccccceeeecCCCCCEEEE
Confidence 000000000000 001112333344433111 00000000 000000112345578899999 8 56776
Q ss_pred eeCCCeEEEEeCCCCceEEeee-CC-ceEEEEEecCCcEEEeecCCCeEE-EEeccccchhhhhccCcCCcceEEEEecC
Q psy18231 394 ASLDCRIRRYDIRTGNLVTDYV-GE-PIVDACFTRDCQCILTCSTDECLR-LFDKATGELLEEYKGHKSGDFRIECCLDS 470 (540)
Q Consensus 394 ~~~dg~i~iwd~~~~~~~~~~~-~~-~i~~~~~sp~~~~l~~~~~dg~i~-i~d~~~~~~~~~~~~~~~~v~~~~~~~s~ 470 (540)
++ ++.|.+|++.+++...... .. .+..++|+ ||+.|+.++.++.+. +||+.+++... +.+|...+..+ +|+|
T Consensus 314 ~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~~~-l~~~~~~~~~~--~~Sp 388 (1045)
T 1k32_A 314 VS-RGQAFIQDVSGTYVLKVPEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGKAEK-FEENLGNVFAM--GVDR 388 (1045)
T ss_dssp EE-TTEEEEECTTSSBEEECSCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCCEEE-CCCCCCSEEEE--EECT
T ss_pred EE-cCEEEEEcCCCCceEEccCCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCCCceE-ecCCccceeee--EECC
Confidence 66 8899999999877554222 24 78999999 999999998888899 99988776443 33666666666 8999
Q ss_pred CCCeEEEeeCCCcEEEEEecCCcceeEEEecccceeeeEEEEcCCCcEEEeec-CC----------eeEEEEcccc
Q psy18231 471 KDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC-GN----------NVKLWTAEED 535 (540)
Q Consensus 471 ~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~-d~----------~i~iw~~~~~ 535 (540)
||++|++++.++.|++||+.+++....+. .|...+.+++|||||++|++++ ++ .|++||+.++
T Consensus 389 DG~~la~~~~~~~v~~~d~~tg~~~~~~~--~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g 462 (1045)
T 1k32_A 389 NGKFAVVANDRFEIMTVDLETGKPTVIER--SREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGR 462 (1045)
T ss_dssp TSSEEEEEETTSEEEEEETTTCCEEEEEE--CSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTT
T ss_pred CCCEEEEECCCCeEEEEECCCCceEEecc--CCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCC
Confidence 99999999999999999999998887776 7888999999999999999887 54 8999999764
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=1.2e-24 Score=207.37 Aligned_cols=267 Identities=11% Similarity=0.116 Sum_probs=209.1
Q ss_pred eeeecCeEEEEeCCCCCEEEEeeC-------CCcEEEEcCCCCeeEEEeecCCcceeEEEEeeCCCeEE-EeeCCCeEEE
Q psy18231 161 LFVLSGLMHTRFPVDGSYCLTCGS-------DKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIA-SGASDKSVIL 232 (540)
Q Consensus 161 ~~h~~~v~~v~~spdg~~lat~~~-------dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~-s~s~dg~i~i 232 (540)
......+..++|+|+|++|++++. ++.|.+||..+++.+..+.. ...+..++|+|++++++ +...++.|.+
T Consensus 37 ~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~v~~~~~~~v~~ 115 (353)
T 3vgz_A 37 KAVGKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHN-DLKPFGATINNTTQTLWFGNTVNSAVTA 115 (353)
T ss_dssp EEEESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEE-SSCCCSEEEETTTTEEEEEETTTTEEEE
T ss_pred hhhccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEec-CCCcceEEECCCCCEEEEEecCCCEEEE
Confidence 345677889999999999888774 56899999999998888874 44578899999999655 5555799999
Q ss_pred EEcCCCceeEeccccCCc---------eeEEEECCCCCEEEEec--CCCcEEEEEecCCCCCCcchhhhhHhhhhcCCce
Q psy18231 233 WEVTTGQPVRRWREHASK---------VTCVKFNEDSSVVISGS--QDNTVMMWDVKSRSHHPIQVRCLNEALKEARDSI 301 (540)
Q Consensus 233 wd~~~~~~~~~~~~h~~~---------v~~~~~~~~~~~l~s~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (540)
||..+++.+..+..+... +.+++|+|+++++++++ .++.|.+||+.+++.. .
T Consensus 116 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~--~--------------- 178 (353)
T 3vgz_A 116 IDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLK--T--------------- 178 (353)
T ss_dssp EETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEE--E---------------
T ss_pred EeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceE--E---------------
Confidence 999999988877654422 78899999999877765 4788999998876510 0
Q ss_pred eEEEEeecccccccccCceeeEEEeeeecccccceeeeeeccceeEEEeecccceecccccccccccchhhhhhcccccE
Q psy18231 302 TSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEARDSI 381 (540)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 381 (540)
.+..+...+
T Consensus 179 -----------------------------------------------------------------------~~~~~~~~~ 187 (353)
T 3vgz_A 179 -----------------------------------------------------------------------AIQNTGKMS 187 (353)
T ss_dssp -----------------------------------------------------------------------EECCCCTTC
T ss_pred -----------------------------------------------------------------------EecCCCCcc
Confidence 111122335
Q ss_pred EEEEecC--CeeEeeeCCCeEEEEeCCCCceEEeeeC------CceEEEEEecCCcEEEeecC-CCeEEEEeccccchhh
Q psy18231 382 TSVHVSD--HEILTASLDCRIRRYDIRTGNLVTDYVG------EPIVDACFTRDCQCILTCST-DECLRLFDKATGELLE 452 (540)
Q Consensus 382 ~~l~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~------~~i~~~~~sp~~~~l~~~~~-dg~i~i~d~~~~~~~~ 452 (540)
.+++++| +.+++++.++.|.+||+.+++.+..+.. +.+..++|+|+++++++++. ++.|.+||..+++.+.
T Consensus 188 ~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~ 267 (353)
T 3vgz_A 188 TGLALDSEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILA 267 (353)
T ss_dssp CCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEE
T ss_pred ceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEE
Confidence 5677877 7788888999999999999988877652 35788999999997776665 5999999999998877
Q ss_pred hhccCcCCcceEEEEecCCCCeEEEee-CCCcEEEEEecCCcceeEEEecccceeeeEEEEcCCCcEEEeec
Q psy18231 453 EYKGHKSGDFRIECCLDSKDSQIFCGS-SDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC 523 (540)
Q Consensus 453 ~~~~~~~~v~~~~~~~s~~~~~l~s~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~ 523 (540)
.+..... ..+ +|+|+|+++++++ .++.|.+||..+++.+..+. . ...+.+++|+|||++|+.+.
T Consensus 268 ~~~~~~~--~~~--~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~--~-~~~~~~~~~s~dg~~l~v~~ 332 (353)
T 3vgz_A 268 KVAAPES--LAV--LFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFD--T-PTHPNSLALSADGKTLYVSV 332 (353)
T ss_dssp EEECSSC--CCE--EEETTTTEEEEEETTTTEEEEEETTTTEEEEEEE--C-CSEEEEEEECTTSCEEEEEE
T ss_pred EEEcCCC--ceE--EECCCCCEEEEEECCCCeEEEEECCCCeEEEEEe--c-CCCCCeEEEcCCCCEEEEEE
Confidence 7765442 334 8999999765555 78999999999999888886 3 34689999999999887766
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=1.7e-25 Score=233.66 Aligned_cols=308 Identities=12% Similarity=0.101 Sum_probs=205.5
Q ss_pred cCeEEEEeCCCCCEEEEeeCCCcEEEEcCCCCeeEEEeecCCcceeEEEEeeCCCeEEEeeCCCeEEEEEcCC-----Cc
Q psy18231 165 SGLMHTRFPVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTT-----GQ 239 (540)
Q Consensus 165 ~~v~~v~~spdg~~lat~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~-----~~ 239 (540)
..|.+++|||| ++++.+. ++.|++||+.+++... +..+...+.+++|||||++|+++ .|+.|.+||+.+ ++
T Consensus 82 ~~v~~~~~spd-~~~~~~~-~~~i~~~d~~~~~~~~-l~~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~ 157 (706)
T 2z3z_A 82 FPSFRTLDAGR-GLVVLFT-QGGLVGFDMLARKVTY-LFDTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSR 157 (706)
T ss_dssp CCCEEEEETTT-TEEEEEE-TTEEEEEETTTTEEEE-EECCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCC
T ss_pred cCceeEEECCC-CeEEEEE-CCEEEEEECCCCceEE-ccCCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCC
Confidence 56999999999 6666554 6999999998887654 44567789999999999999985 679999999998 87
Q ss_pred eeEeccccCCc--------------eeEEEECCCCCEEEEecCC-CcEEEEEecCCCCCCcchhhhhHhhhhcCCceeEE
Q psy18231 240 PVRRWREHASK--------------VTCVKFNEDSSVVISGSQD-NTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSV 304 (540)
Q Consensus 240 ~~~~~~~h~~~--------------v~~~~~~~~~~~l~s~~~d-g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (540)
.......+... +.++.|+|||++|++++.| ..+..+.+......... .
T Consensus 158 ~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~-----------------~ 220 (706)
T 2z3z_A 158 AIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAE-----------------S 220 (706)
T ss_dssp CEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCE-----------------E
T ss_pred cEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCc-----------------e
Confidence 76655444443 4899999999999988733 22222222211100000 0
Q ss_pred EEeecccccccccCceeeEEEeeeecccccceeeeeeccceeEEEeecccceecccccccccccchhhhhhcccccEEEE
Q psy18231 305 HSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEARDSITSV 384 (540)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l 384 (540)
.... + .. .+ .......+.+++..+..... +.....|...+.++
T Consensus 221 ~~~~------------------y--~~-~g-----~~~~~~~l~~~d~~~~~~~~-----------~~~~~~~~~~~~~~ 263 (706)
T 2z3z_A 221 KPLY------------------Y--PM-AG-----TPSHHVTVGIYHLATGKTVY-----------LQTGEPKEKFLTNL 263 (706)
T ss_dssp EEEC------------------C--CB-TT-----SCCCEEEEEEEETTTTEEEE-----------CCCCSCTTCEEEEE
T ss_pred EEee------------------C--CC-CC-----CCCCeeEEEEEECCCCceEe-----------eccCCCCceeEeeE
Confidence 0000 0 00 00 00112334444443322110 00112456778999
Q ss_pred EecC--CeeEeeeCCC-----eEEEEeCCCCceEEeee---C----CceEEEEEec--CCcEEEeecCCCeEEEEecc-c
Q psy18231 385 HVSD--HEILTASLDC-----RIRRYDIRTGNLVTDYV---G----EPIVDACFTR--DCQCILTCSTDECLRLFDKA-T 447 (540)
Q Consensus 385 ~~~~--~~l~~~~~dg-----~i~iwd~~~~~~~~~~~---~----~~i~~~~~sp--~~~~l~~~~~dg~i~i~d~~-~ 447 (540)
+|+| +.+++++.++ .|++||+.+++....+. . ..+..++|+| ||+++++++.|+.++||++. +
T Consensus 264 ~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~ 343 (706)
T 2z3z_A 264 SWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTT 343 (706)
T ss_dssp EECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETT
T ss_pred EEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEEEccCCccEEEEEECC
Confidence 9999 6688877665 89999999984333332 1 1246789999 99999999999999999876 5
Q ss_pred cchhhhhccCcCCcceEEEEecCCCCeEEEeeC-CC----cEEEEEecCCcceeEEEecccceeeeEEEEcCCCcEEEee
Q psy18231 448 GELLEEYKGHKSGDFRIECCLDSKDSQIFCGSS-DG----KIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSA 522 (540)
Q Consensus 448 ~~~~~~~~~~~~~v~~~~~~~s~~~~~l~s~s~-dg----~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~ 522 (540)
++.+..+..+...+..+ ++|+|+|+.|+.++. ++ .|+.||+.+++ ...+ .|...+.+++|||||++|+.+
T Consensus 344 ~~~~~~l~~~~~~v~~~-~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~-~~~l---~~~~~~~~~~~spdg~~l~~~ 418 (706)
T 2z3z_A 344 GRLIRQVTKGEWEVTNF-AGFDPKGTRLYFESTEASPLERHFYCIDIKGGK-TKDL---TPESGMHRTQLSPDGSAIIDI 418 (706)
T ss_dssp SCEEEECCCSSSCEEEE-EEECTTSSEEEEEESSSCTTCBEEEEEETTCCC-CEES---CCSSSEEEEEECTTSSEEEEE
T ss_pred CCEEEecCCCCeEEEee-eEEcCCCCEEEEEecCCCCceEEEEEEEcCCCC-ceec---cCCCceEEEEECCCCCEEEEE
Confidence 66667777776655441 389999998766554 44 56677766655 3344 356678999999999988876
Q ss_pred c-C----CeeEEEEcccc
Q psy18231 523 C-G----NNVKLWTAEED 535 (540)
Q Consensus 523 ~-d----~~i~iw~~~~~ 535 (540)
. + +.|.+||++++
T Consensus 419 ~~~~~~p~~i~l~d~~~~ 436 (706)
T 2z3z_A 419 FQSPTVPRKVTVTNIGKG 436 (706)
T ss_dssp EECSSCSCEEEEEESSSC
T ss_pred ecCCCCCcEEEEEECCCC
Confidence 4 3 56999998765
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=99.94 E-value=1.4e-24 Score=205.89 Aligned_cols=266 Identities=12% Similarity=0.219 Sum_probs=184.3
Q ss_pred CEEE-EeeCCCcEEEEcCC-CC--eeEEEeecCCcceeEEEEeeCCCeEEEeeCC-CeEEEEEcC--CCce--eEecccc
Q psy18231 177 SYCL-TCGSDKKIKLWNPY-RN--LLLKTYGGHAHEVNDATAACDSSQIASGASD-KSVILWEVT--TGQP--VRRWREH 247 (540)
Q Consensus 177 ~~la-t~~~dg~i~iwd~~-~~--~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~d-g~i~iwd~~--~~~~--~~~~~~h 247 (540)
++++ +++.++.|++||+. ++ +.+..+ .|...+.+++|+|++++|++++.+ +.|.+|++. +++. +..+..+
T Consensus 5 ~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 83 (343)
T 1ri6_A 5 QTVYIASPESQQIHVWNLNHEGALTLTQVV-DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALP 83 (343)
T ss_dssp EEEEEEEGGGTEEEEEEECTTSCEEEEEEE-ECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECS
T ss_pred EEEEEeCCCCCeEEEEEECCCCcEEEeeeE-ecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccC
Confidence 3444 44779999999985 33 334333 477889999999999999888886 999999997 5543 3344443
Q ss_pred CCceeEEEECCCCCEEEEecC-CCcEEEEEecCCCCCCcchhhhhHhhhhcCCceeEEEEeecccccccccCceeeEEEe
Q psy18231 248 ASKVTCVKFNEDSSVVISGSQ-DNTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFA 326 (540)
Q Consensus 248 ~~~v~~~~~~~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (540)
. .+..++|+|++++|++++. ++.|.+||+..+.....
T Consensus 84 ~-~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~----------------------------------------- 121 (343)
T 1ri6_A 84 G-SLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGV----------------------------------------- 121 (343)
T ss_dssp S-CCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEE-----------------------------------------
T ss_pred C-CCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccc-----------------------------------------
Confidence 3 7899999999998866654 88999999962210000
Q ss_pred eeecccccceeeeeeccceeEEEeecccceecccccccccccchhhhhhcccccEEEEEecC--CeeEeee-CCCeEEEE
Q psy18231 327 FRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEARDSITSVHVSD--HEILTAS-LDCRIRRY 403 (540)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~--~~l~~~~-~dg~i~iw 403 (540)
.... .....+.+++|+| +.+++++ .++.|.+|
T Consensus 122 --------------------------------------------~~~~-~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~ 156 (343)
T 1ri6_A 122 --------------------------------------------VDVV-EGLDGCHSANISPDNRTLWVPALKQDRICLF 156 (343)
T ss_dssp --------------------------------------------EEEE-CCCTTBCCCEECTTSSEEEEEEGGGTEEEEE
T ss_pred --------------------------------------------cccc-cCCCCceEEEECCCCCEEEEecCCCCEEEEE
Confidence 0001 1123466788888 5677666 89999999
Q ss_pred eCCC-CceEE----eee---CCceEEEEEecCCcEEEee-cCCCeEEEEeccc--cch--hhhhc----cCcCCcceEEE
Q psy18231 404 DIRT-GNLVT----DYV---GEPIVDACFTRDCQCILTC-STDECLRLFDKAT--GEL--LEEYK----GHKSGDFRIEC 466 (540)
Q Consensus 404 d~~~-~~~~~----~~~---~~~i~~~~~sp~~~~l~~~-~~dg~i~i~d~~~--~~~--~~~~~----~~~~~v~~~~~ 466 (540)
|+.+ ++... .+. +..+..++|+|++++++++ ..++.|.+||+.. ++. ...+. ++........+
T Consensus 157 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i 236 (343)
T 1ri6_A 157 TVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADI 236 (343)
T ss_dssp EECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEE
T ss_pred EecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccce
Confidence 9987 65432 222 3478899999999976554 4789999999953 332 11111 11222223345
Q ss_pred EecCCCCeEE-EeeCCCcEEEEEec--CC--cceeEEEecccceeeeEEEEcCCCcEEEeec--CCeeEEEEcc
Q psy18231 467 CLDSKDSQIF-CGSSDGKIYKWQLV--DS--SQISTLIHSVGKAVVNSLCSHPTRKHIMSAC--GNNVKLWTAE 533 (540)
Q Consensus 467 ~~s~~~~~l~-s~s~dg~i~iwd~~--~~--~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~--d~~i~iw~~~ 533 (540)
+|+|+|++|+ ++..++.|++||+. ++ +.+..+. .+.. +..++|+|+|++|++++ ++.|.+|+++
T Consensus 237 ~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~--~~~~-~~~~~~s~dg~~l~~~~~~~~~v~v~~~d 307 (343)
T 1ri6_A 237 HITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQP--TETQ-PRGFNVDHSGKYLIAAGQKSHHISVYEIV 307 (343)
T ss_dssp EECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEE--CSSS-CCCEEECTTSSEEEEECTTTCEEEEEEEE
T ss_pred EECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeec--CCCc-cceEEECCCCCEEEEecCCCCeEEEEEEc
Confidence 8999999877 55579999999998 33 3344444 3433 89999999999888776 7999999665
|
| >1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 | Back alignment and structure |
|---|
Probab=99.94 E-value=4.1e-26 Score=239.16 Aligned_cols=293 Identities=12% Similarity=0.089 Sum_probs=199.8
Q ss_pred CeEEEEeCCCCCEEEEeeCCCcEEEEcCCCCeeEEEeecCCc---ceeEEEEeeCCCeEEEeeCC---------CeEEEE
Q psy18231 166 GLMHTRFPVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAH---EVNDATAACDSSQIASGASD---------KSVILW 233 (540)
Q Consensus 166 ~v~~v~~spdg~~lat~~~dg~i~iwd~~~~~~~~~~~~h~~---~v~~l~~sp~~~~l~s~s~d---------g~i~iw 233 (540)
.+.+++|+|||+++++ +.||+|++||+.+++....+.+|.. .|.+++|||||++|++++.+ +.+.+|
T Consensus 18 ~~~~~~~spdg~~~~~-~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~ 96 (723)
T 1xfd_A 18 HDPEAKWISDTEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLS 96 (723)
T ss_dssp CCCCCCBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEE
T ss_pred cccccEEcCCCcEEEE-eCCCCEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEE
Confidence 3667899999998776 6799999999999988888877765 49999999999999999774 788899
Q ss_pred EcCCCcee--EeccccCCceeEEEECCCCCEEEEecCCCcEEEEEecCCCCCCcchhhhhHhhhhcCCceeEEEEeeccc
Q psy18231 234 EVTTGQPV--RRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKST 311 (540)
Q Consensus 234 d~~~~~~~--~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (540)
|+.+++.. .....|...+..++|+|||+.|++++. +.|++||+.+++...+.... .
T Consensus 97 d~~~~~~~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~~~~---------------------~ 154 (723)
T 1xfd_A 97 KIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVVSTG---------------------K 154 (723)
T ss_dssp ESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCCEEEECCC---------------------B
T ss_pred ECCCCceEeccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCCceEEEecCC---------------------C
Confidence 99988762 222345556899999999999999885 79999999887631111000 0
Q ss_pred ccccccCceeeEEEeeeecccccceeeeeeccceeEEEeecccceecccccccccccchhhhhhcccccEEEEEecC--C
Q psy18231 312 KNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEARDSITSVHVSD--H 389 (540)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~--~ 389 (540)
.. .... |. ..+ + ....-...+.+++|+| +
T Consensus 155 ~~---------------------------------~~~~---g~-~~~-----------v-~~ee~~~~~~~~~~SpDg~ 185 (723)
T 1xfd_A 155 EG---------------------------------VIYN---GL-SDW-----------L-YEEEILKTHIAHWWSPDGT 185 (723)
T ss_dssp TT---------------------------------TEEE---EE-CCH-----------H-HHHTTSSSSEEEEECTTSS
T ss_pred CC---------------------------------ceEC---cc-cce-----------e-EEEEeccCcceEEECCCCC
Confidence 00 0000 00 000 0 0000012335667776 5
Q ss_pred eeEeeeCC----------------------------------CeEEEEeCCCCceEEeeeC--------CceEEEEEecC
Q psy18231 390 EILTASLD----------------------------------CRIRRYDIRTGNLVTDYVG--------EPIVDACFTRD 427 (540)
Q Consensus 390 ~l~~~~~d----------------------------------g~i~iwd~~~~~~~~~~~~--------~~i~~~~~sp~ 427 (540)
.|++++.| ..|++||+.+++....+.. ..+..++||||
T Consensus 186 ~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpD 265 (723)
T 1xfd_A 186 RLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATS 265 (723)
T ss_dssp EEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSS
T ss_pred EEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeCC
Confidence 56655543 2799999998876455542 36889999999
Q ss_pred CcEEEeecC----CCeEEEEeccccchhhhhccC-cCCcc----eEEEEecCCCCeEEE--eeCCC------cEEEEEe-
Q psy18231 428 CQCILTCST----DECLRLFDKATGELLEEYKGH-KSGDF----RIECCLDSKDSQIFC--GSSDG------KIYKWQL- 489 (540)
Q Consensus 428 ~~~l~~~~~----dg~i~i~d~~~~~~~~~~~~~-~~~v~----~~~~~~s~~~~~l~s--~s~dg------~i~iwd~- 489 (540)
|+++++... +..|++||+.+++....+..+ ...+. .+ +|+|||+.|+. +..++ .|++||+
T Consensus 266 g~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~--~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~ 343 (723)
T 1xfd_A 266 TKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEP--VFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQ 343 (723)
T ss_dssp SEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCC--EECTTSCSEEEEEEECCSSSSCEEEEEEECSS
T ss_pred CeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCCc--eEcCCCCeEEEEEecccCCCcceeEEEEEecc
Confidence 998876643 367999999998876655433 33332 34 89999998775 44666 5677773
Q ss_pred cCCcc--eeEEEecccceeee-EEEEcCCCcEEEeec--C--CeeEEEEccc
Q psy18231 490 VDSSQ--ISTLIHSVGKAVVN-SLCSHPTRKHIMSAC--G--NNVKLWTAEE 534 (540)
Q Consensus 490 ~~~~~--~~~~~~~~~~~~v~-~l~~s~d~~~l~s~~--d--~~i~iw~~~~ 534 (540)
..++. ...+. .+...+. .++|+|||+.|+..+ + +.++||+++.
T Consensus 344 ~~~~~~~~~~l~--~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~ 393 (723)
T 1xfd_A 344 PNSSNDNIQSIT--SGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANT 393 (723)
T ss_dssp CCSSSCCCCBSC--CSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECS
T ss_pred CCCCccceeEee--cCCeEEEeeeEEcCCCCEEEEEEcCCCCcceEEEEEeC
Confidence 33331 44444 2333344 479999999997665 4 7899999864
|
| >1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=1.4e-24 Score=235.80 Aligned_cols=360 Identities=9% Similarity=0.009 Sum_probs=240.2
Q ss_pred Ccceeccccchhhhhhcc-----cccceeeeecccccc--eeeeeecCe-------EEEEeCCCCCEEEEeeCC------
Q psy18231 126 HPLLFSLPRTITRILYEL-----PKEWSIRVYRPLTVN--RELFVLSGL-------MHTRFPVDGSYCLTCGSD------ 185 (540)
Q Consensus 126 ~~~~~s~~~~~~~~~~~~-----~~~~~i~~~~~~~~~--~~~~h~~~v-------~~v~~spdg~~lat~~~d------ 185 (540)
....||++. ..+++.. .....|.+|+..... +...|...+ ..++|||||+++++++.+
T Consensus 56 ~~~~~SPDG--~~la~~s~~~~~~~~~~i~~~d~~~g~~~~lt~~~~~~~~~~~~~~~~~~SpDg~ll~~~~~~~~~~~~ 133 (1045)
T 1k32_A 56 NNARFFPDG--RKIAIRVMRGSSLNTADLYFYNGENGEIKRITYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSM 133 (1045)
T ss_dssp EEEEECTTS--SEEEEEEEESTTCCEEEEEEEETTTTEEEECCCCCEEEETTEECSEEEEECTTCCEEEEECTTSSSTTC
T ss_pred cCeEECCCC--CEEEEEEeeccCCCCCeEEEEECCCCCeEEcccCCCcccccccccccccCCCCCEEEEEECCcCCCccc
Confidence 345566654 3333322 234578899876643 344577777 999999999977777654
Q ss_pred CcEEEEcCCCCeeE-------------------------------------------------EEeecCCcceeEEEEee
Q psy18231 186 KKIKLWNPYRNLLL-------------------------------------------------KTYGGHAHEVNDATAAC 216 (540)
Q Consensus 186 g~i~iwd~~~~~~~-------------------------------------------------~~~~~h~~~v~~l~~sp 216 (540)
..|.+|++.+++.. ..+.+|...+.++.|++
T Consensus 134 ~~l~~~~~~~g~~~~l~~~~~~~~~~spG~l~~~~~~~~~~~~~~~~g~~~~~lw~~~~~~~~~~l~~~~~~v~~~~~s~ 213 (1045)
T 1k32_A 134 TCLYRVENDGINFVPLNLGPATHILFADGRRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMSTHVSSPVIVG 213 (1045)
T ss_dssp CEEEEEEGGGTEEEECCSCSCSEEEEETTEEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEECCSSCCEEEEEET
T ss_pred ceEEEEECCCCCeEEecCCCcceeeeCCCEEEEeccCCCccccccccCCCcCCEEEECCCCCeEECcCCCCcccceEEeC
Confidence 35777776554322 22345777888899988
Q ss_pred CCCeEEEeeCCCeEEEEEcCC-CceeEeccccCCceeEEEECCCCCEEEEecCCCcEEEEEecCCCCCCcchhhhhHhhh
Q psy18231 217 DSSQIASGASDKSVILWEVTT-GQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQVRCLNEALK 295 (540)
Q Consensus 217 ~~~~l~s~s~dg~i~iwd~~~-~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 295 (540)
+ .++++++.|++++||.+.. +.....+..|. .+...+|+|||++|+++. ++.|.+||+...... . +.
T Consensus 214 d-~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~-~~~~~~~SpDG~~la~~~-~~~i~~~d~~~~~l~--~---l~---- 281 (1045)
T 1k32_A 214 H-RIYFITDIDGFGQIYSTDLDGKDLRKHTSFT-DYYPRHLNTDGRRILFSK-GGSIYIFNPDTEKIE--K---IE---- 281 (1045)
T ss_dssp T-EEEEEECTTSSCEEEEEETTSCSCEECCCCC-SSCEEEEEESSSCEEEEE-TTEEEEECTTTCCEE--E---CC----
T ss_pred C-EEEEEEeccCceEEEEEeCCCCcceEecCCC-CcceeeEcCCCCEEEEEe-CCEEEEecCCceEee--e---ec----
Confidence 7 6677888889999998764 44555565555 467789999999998874 899999998332210 0 00
Q ss_pred hcCCceeEEEEeecccccccccCceeeEEEeeeecccccceeeeeec-cceeEEEeecccceecccccccccccchhhhh
Q psy18231 296 EARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMS-TQHLMVLLDFLGSTQIGDVTPISIHNSCFQAL 374 (540)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (540)
.... ... .. ..........+.++ .++..+++...+...+++... .....+
T Consensus 282 ~~~~------------~~~------~~------~~~~~~~v~~~~~S~pdG~~la~~~~~~i~~~~~~~-----~~~~~~ 332 (1045)
T 1k32_A 282 IGDL------------ESP------ED------RIISIPSKFAEDFSPLDGDLIAFVSRGQAFIQDVSG-----TYVLKV 332 (1045)
T ss_dssp CCCC------------CBC------CS------EEEECGGGGEEEEEECGGGCEEEEETTEEEEECTTS-----SBEEEC
T ss_pred cCcc------------ccc------cc------ccccccccceeeecCCCCCEEEEEEcCEEEEEcCCC-----CceEEc
Confidence 0000 000 00 00000111222223 222222222222222211111 111123
Q ss_pred hcccc-cEEEEEecC-CeeEeeeCCCeEE-EEeCCCCceEEeee-CCceEEEEEecCCcEEEeecCCCeEEEEeccccch
Q psy18231 375 KEARD-SITSVHVSD-HEILTASLDCRIR-RYDIRTGNLVTDYV-GEPIVDACFTRDCQCILTCSTDECLRLFDKATGEL 450 (540)
Q Consensus 375 ~~~~~-~v~~l~~~~-~~l~~~~~dg~i~-iwd~~~~~~~~~~~-~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~ 450 (540)
..|.. .+..++|+. +.++.++.++.+. +||+.+++...... ...+..++|+|||++|++++.++.|++||+.+++.
T Consensus 333 ~~~~~~~~~~~~~sdg~~l~~~s~~~~l~~~~d~~~~~~~~l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~ 412 (1045)
T 1k32_A 333 PEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKP 412 (1045)
T ss_dssp SCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCEEECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCE
T ss_pred cCCCcceEEeeeEcCCCeEEEEECCCceEEEEECCCCCceEecCCccceeeeEECCCCCEEEEECCCCeEEEEECCCCce
Confidence 45555 788888884 5678888888898 99998876543332 25789999999999999999999999999999988
Q ss_pred hhhhccCcCCcceEEEEecCCCCeEEEeeCCC----------cEEEEEecCCcceeEEEecccceeeeEEEEcCCCcEEE
Q psy18231 451 LEEYKGHKSGDFRIECCLDSKDSQIFCGSSDG----------KIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIM 520 (540)
Q Consensus 451 ~~~~~~~~~~v~~~~~~~s~~~~~l~s~s~dg----------~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~ 520 (540)
...+..|...+..+ +|+|||++|++++.++ .|++||+.+++ +..+. .|...+..++|+|||++|+
T Consensus 413 ~~~~~~~~~~v~~~--~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~-~~~l~--~~~~~~~~~~~spdG~~l~ 487 (1045)
T 1k32_A 413 TVIERSREAMITDF--TISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK-IFAAT--TENSHDYAPAFDADSKNLY 487 (1045)
T ss_dssp EEEEECSSSCCCCE--EECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE-EEECS--CSSSBEEEEEECTTSCEEE
T ss_pred EEeccCCCCCccce--EECCCCCeEEEEecCccccccCCCCCeEEEEECCCCc-EEEee--CCCcccCCceEcCCCCEEE
Confidence 77777888888877 8999999999887654 89999998877 55555 6788899999999999999
Q ss_pred eec-CCeeEEEEcc
Q psy18231 521 SAC-GNNVKLWTAE 533 (540)
Q Consensus 521 s~~-d~~i~iw~~~ 533 (540)
+++ ++...+|+..
T Consensus 488 ~~s~~~~~~~~~~~ 501 (1045)
T 1k32_A 488 YLSYRSLDPSPDRV 501 (1045)
T ss_dssp EEESCCCCCEECSS
T ss_pred EEecccCCcCcchh
Confidence 988 8888888753
|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.94 E-value=6.9e-25 Score=203.32 Aligned_cols=250 Identities=10% Similarity=0.024 Sum_probs=189.7
Q ss_pred EeeCCCcEEEEcCCCCeeEEEeecCCcceeEEEEeeCCCeEEEeeCCCeEEEEEcCC-CceeEecccc-CCceeEEEECC
Q psy18231 181 TCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTT-GQPVRRWREH-ASKVTCVKFNE 258 (540)
Q Consensus 181 t~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~-~~~~~~~~~h-~~~v~~~~~~~ 258 (540)
.++.|++|++||+.+++... +..|...|.+++|+|++++|++++ ++.|.+||+.+ ++.......| ...+.+++|+|
T Consensus 17 ~~~~~~~i~~~d~~~~~~~~-~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~sp 94 (297)
T 2ojh_A 17 GGSMRSSIEIFNIRTRKMRV-VWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNNDHGISP 94 (297)
T ss_dssp -CCCCEEEEEEETTTTEEEE-EEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCSCCEECT
T ss_pred CCCcceeEEEEeCCCCceee-eccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccccccccccceEECC
Confidence 45678999999999888664 455899999999999999999987 78999999999 8877766665 47889999999
Q ss_pred CCCEEEEec--CCCcEEEEEecCCCCCCcchhhhhHhhhhcCCceeEEEEeecccccccccCceeeEEEeeeecccccce
Q psy18231 259 DSSVVISGS--QDNTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLL 336 (540)
Q Consensus 259 ~~~~l~s~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (540)
++++|++++ .++...+|.+........
T Consensus 95 dg~~l~~~~~~~~~~~~l~~~~~~~~~~~--------------------------------------------------- 123 (297)
T 2ojh_A 95 DGALYAISDKVEFGKSAIYLLPSTGGTPR--------------------------------------------------- 123 (297)
T ss_dssp TSSEEEEEECTTTSSCEEEEEETTCCCCE---------------------------------------------------
T ss_pred CCCEEEEEEeCCCCcceEEEEECCCCceE---------------------------------------------------
Confidence 999999998 445667776643221000
Q ss_pred eeeeeccceeEEEeecccceecccccccccccchhhhhhcccccEEEEEecC--CeeE-eeeCCCeEEEEeCC--CCceE
Q psy18231 337 SGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEARDSITSVHVSD--HEIL-TASLDCRIRRYDIR--TGNLV 411 (540)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~--~~l~-~~~~dg~i~iwd~~--~~~~~ 411 (540)
.+.. ...+..++|+| +.++ ++..++.+++|+++ +++.
T Consensus 124 ------------------------------------~~~~-~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~- 165 (297)
T 2ojh_A 124 ------------------------------------LMTK-NLPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVE- 165 (297)
T ss_dssp ------------------------------------ECCS-SSSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCE-
T ss_pred ------------------------------------Eeec-CCCccceEECCCCCEEEEEECCCCceEEEEEECCCCcc-
Confidence 1111 12377788988 5555 77889999999853 4443
Q ss_pred Eeee--CCceEEEEEecCCcEEEeec-CCCeEEEEecc-ccchhhhhccCcCCcceEEEEecCCCCeEEEeeCC------
Q psy18231 412 TDYV--GEPIVDACFTRDCQCILTCS-TDECLRLFDKA-TGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSD------ 481 (540)
Q Consensus 412 ~~~~--~~~i~~~~~sp~~~~l~~~~-~dg~i~i~d~~-~~~~~~~~~~~~~~v~~~~~~~s~~~~~l~s~s~d------ 481 (540)
..+. ...+.+++|+|++++|+.++ .++.+++|++. .+..+..+..|...+..+ +|+|+|++|++++.+
T Consensus 166 ~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~--~~s~dg~~l~~~~~~~~~~~~ 243 (297)
T 2ojh_A 166 TRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFP--HPSPSGDKVVFVSYDADVFDH 243 (297)
T ss_dssp EECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEE--EECTTSSEEEEEEEETTCCSC
T ss_pred eEcccCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEecCCcccCCe--EECCCCCEEEEEEcCCCCCcc
Confidence 3333 25799999999999887766 58999999886 455666677776655555 899999999988876
Q ss_pred -----CcEEEEEecCCcceeEEEecccceeeeEEEEcCCCcEEEeec
Q psy18231 482 -----GKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC 523 (540)
Q Consensus 482 -----g~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~ 523 (540)
+.|++||+.+++.........|...+..++|+|++++|++++
T Consensus 244 ~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~ 290 (297)
T 2ojh_A 244 PRDLDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDGDEFAYVR 290 (297)
T ss_dssp CSSEEEEEEEEETTSCSCEEEEEEEESTTTSCSCCBCTTSSEEEEEE
T ss_pred cccCceEEEEEecCCCCceeeeccCCCCcccccceECCCCCEEEEEE
Confidence 569999998887644443336788899999999999999887
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=99.93 E-value=3.3e-24 Score=203.40 Aligned_cols=284 Identities=8% Similarity=0.044 Sum_probs=196.4
Q ss_pred ccccceeeeecccc-c----ceeeeeecCeEEEEeCCCCCEEEEeeCC-CcEEEEcCC--CCe--eEEEeecCCcceeEE
Q psy18231 143 LPKEWSIRVYRPLT-V----NRELFVLSGLMHTRFPVDGSYCLTCGSD-KKIKLWNPY--RNL--LLKTYGGHAHEVNDA 212 (540)
Q Consensus 143 ~~~~~~i~~~~~~~-~----~~~~~h~~~v~~v~~spdg~~lat~~~d-g~i~iwd~~--~~~--~~~~~~~h~~~v~~l 212 (540)
...++.|++|+... . .....|...+.+++|+|+|++|++++.+ +.|.+|++. +++ .+..+..+. .+..+
T Consensus 11 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 89 (343)
T 1ri6_A 11 SPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPG-SLTHI 89 (343)
T ss_dssp EGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSS-CCSEE
T ss_pred CCCCCeEEEEEECCCCcEEEeeeEecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCC-CCcEE
Confidence 35678899998742 1 1234577889999999999999988876 999999987 444 444555444 88999
Q ss_pred EEeeCCCeEEEeeC-CCeEEEEEcC---CCceeEeccccCCceeEEEECCCCCEEEEec-CCCcEEEEEecC-CCCCCcc
Q psy18231 213 TAACDSSQIASGAS-DKSVILWEVT---TGQPVRRWREHASKVTCVKFNEDSSVVISGS-QDNTVMMWDVKS-RSHHPIQ 286 (540)
Q Consensus 213 ~~sp~~~~l~s~s~-dg~i~iwd~~---~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~-~dg~i~iwd~~~-~~~~~~~ 286 (540)
+|+|++++|++++. ++.|.+||+. ..+.+..+.. ...+.+++|+|+++++++++ .++.|.+||+.+ ++.....
T Consensus 90 ~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~ 168 (343)
T 1ri6_A 90 STDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEG-LDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQD 168 (343)
T ss_dssp EECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECC-CTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEE
T ss_pred EEcCCCCEEEEEecCCCeEEEEECCCCccccccccccC-CCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeec
Confidence 99999998876665 8899999994 3444454443 34689999999999888776 889999999976 3310000
Q ss_pred hhhhhHhhhhcCCceeEEEEeecccccccccCceeeEEEeeeecccccceeeeeeccceeEEEeecccceeccccccccc
Q psy18231 287 VRCLNEALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISI 366 (540)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (540)
.
T Consensus 169 ----------------------------------------------------------------~--------------- 169 (343)
T 1ri6_A 169 ----------------------------------------------------------------P--------------- 169 (343)
T ss_dssp ----------------------------------------------------------------E---------------
T ss_pred ----------------------------------------------------------------c---------------
Confidence 0
Q ss_pred ccchhhhhhcccccEEEEEecC--CeeEe-eeCCCeEEEEeCCC--Cce--EEeee---C-----CceEEEEEecCCcEE
Q psy18231 367 HNSCFQALKEARDSITSVHVSD--HEILT-ASLDCRIRRYDIRT--GNL--VTDYV---G-----EPIVDACFTRDCQCI 431 (540)
Q Consensus 367 ~~~~~~~~~~~~~~v~~l~~~~--~~l~~-~~~dg~i~iwd~~~--~~~--~~~~~---~-----~~i~~~~~sp~~~~l 431 (540)
..........+.+++|+| +++++ +..++.|.+||++. ++. ..... . ..+..++|+|+|++|
T Consensus 170 ----~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l 245 (343)
T 1ri6_A 170 ----AEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHL 245 (343)
T ss_dssp ----EEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEE
T ss_pred ----cccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEE
Confidence 000001123567889988 54544 45889999999954 432 22222 1 246689999999887
Q ss_pred Ee-ecCCCeEEEEecc----ccchhhhhccCcCCcceEEEEecCCCCeEEEee-CCCcEEEEEec--CCcc--eeEEEec
Q psy18231 432 LT-CSTDECLRLFDKA----TGELLEEYKGHKSGDFRIECCLDSKDSQIFCGS-SDGKIYKWQLV--DSSQ--ISTLIHS 501 (540)
Q Consensus 432 ~~-~~~dg~i~i~d~~----~~~~~~~~~~~~~~v~~~~~~~s~~~~~l~s~s-~dg~i~iwd~~--~~~~--~~~~~~~ 501 (540)
++ ...++.|.+||+. +.+.+..+..+.. +..+ +|+|+|++|++++ .++.|.+|++. +++. +..+.
T Consensus 246 ~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~-~~~~--~~s~dg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~~-- 320 (343)
T 1ri6_A 246 YACDRTASLITVFSVSEDGSVLSKEGFQPTETQ-PRGF--NVDHSGKYLIAAGQKSHHISVYEIVGEQGLLHEKGRYA-- 320 (343)
T ss_dssp EEEETTTTEEEEEEECTTSCCEEEEEEEECSSS-CCCE--EECTTSSEEEEECTTTCEEEEEEEETTTTEEEEEEEEE--
T ss_pred EEEecCCCEEEEEEEcCCCCceEEeeeecCCCc-cceE--EECCCCCEEEEecCCCCeEEEEEEcCCCceeeEccccc--
Confidence 74 5578999999998 2344444544444 5556 8999999888877 68999999664 5533 33333
Q ss_pred ccceeeeEEEEcCCCc
Q psy18231 502 VGKAVVNSLCSHPTRK 517 (540)
Q Consensus 502 ~~~~~v~~l~~s~d~~ 517 (540)
. .....+++|.|+.+
T Consensus 321 ~-g~~p~~i~~~~~~~ 335 (343)
T 1ri6_A 321 V-GQGPMWVVVNAHEG 335 (343)
T ss_dssp C-SSSCCEEEEEEEC-
T ss_pred c-CCCCeeEEEEcccC
Confidence 2 34577888877654
|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* | Back alignment and structure |
|---|
Probab=99.93 E-value=8.1e-25 Score=207.04 Aligned_cols=261 Identities=15% Similarity=0.128 Sum_probs=197.1
Q ss_pred CEEEEeeCCCcEEEEcCCCCeeEEEeecCCc--ceeEEEEeeCCCeE-EEeeCCCeEEEEEcCCCceeEeccc-c----C
Q psy18231 177 SYCLTCGSDKKIKLWNPYRNLLLKTYGGHAH--EVNDATAACDSSQI-ASGASDKSVILWEVTTGQPVRRWRE-H----A 248 (540)
Q Consensus 177 ~~lat~~~dg~i~iwd~~~~~~~~~~~~h~~--~v~~l~~sp~~~~l-~s~s~dg~i~iwd~~~~~~~~~~~~-h----~ 248 (540)
++|++++.++.|.+||+.+++.+..+..... .+..++|+|+++++ ++++.++.|.+||+.+++.+..+.. + .
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~ 81 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERV 81 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEE
T ss_pred cEEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCccccc
Confidence 4788999999999999999999888863322 58899999999876 5556678999999999988776642 2 2
Q ss_pred CceeEEEECCCCCEEEEec------------CCCcEEEEEecCCCCCCcchhhhhHhhhhcCCceeEEEEeecccccccc
Q psy18231 249 SKVTCVKFNEDSSVVISGS------------QDNTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHLS 316 (540)
Q Consensus 249 ~~v~~~~~~~~~~~l~s~~------------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (540)
..+..++|+|+++++++++ .++.|.+||+.+++.. .
T Consensus 82 ~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~--~------------------------------ 129 (337)
T 1pby_B 82 KSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRR--K------------------------------ 129 (337)
T ss_dssp ECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEE--E------------------------------
T ss_pred ccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEE--E------------------------------
Confidence 3678899999999998886 5799999998765410 0
Q ss_pred cCceeeEEEeeeecccccceeeeeeccceeEEEeecccceecccccccccccchhhhhhcccccEEEEEecC--CeeEee
Q psy18231 317 NGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEARDSITSVHVSD--HEILTA 394 (540)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~--~~l~~~ 394 (540)
.+ .....+.+++|+| +.++++
T Consensus 130 --------------------------------------------------------~~-~~~~~~~~~~~s~dg~~l~~~ 152 (337)
T 1pby_B 130 --------------------------------------------------------AF-EAPRQITMLAWARDGSKLYGL 152 (337)
T ss_dssp --------------------------------------------------------EE-ECCSSCCCEEECTTSSCEEEE
T ss_pred --------------------------------------------------------EE-eCCCCcceeEECCCCCEEEEe
Confidence 00 0122355677887 556666
Q ss_pred eCCCeEEEEeCCCCceEEeeeCCc-eEEEEEecCCcEEEeecCCC------------------------eEEEEeccccc
Q psy18231 395 SLDCRIRRYDIRTGNLVTDYVGEP-IVDACFTRDCQCILTCSTDE------------------------CLRLFDKATGE 449 (540)
Q Consensus 395 ~~dg~i~iwd~~~~~~~~~~~~~~-i~~~~~sp~~~~l~~~~~dg------------------------~i~i~d~~~~~ 449 (540)
++.|.+||+.+++....+..+. ...+.|+|+++.++..+.++ .|.+||+.+++
T Consensus 153 --~~~i~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~ 230 (337)
T 1pby_B 153 --GRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGE 230 (337)
T ss_dssp --SSSEEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCC
T ss_pred --CCeEEEEECCCCcEeeeeeccccCCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCC
Confidence 6889999999998877765421 22347899998776655332 46899998887
Q ss_pred hh-hhhccCcCCcceEEEEecCCCCeEEEeeCCCcEEEEEecCCcceeEEEecccceeeeEEEEcCCCcEEEeec-CCee
Q psy18231 450 LL-EEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC-GNNV 527 (540)
Q Consensus 450 ~~-~~~~~~~~~v~~~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~-d~~i 527 (540)
.. ..+..+...+..+ +|+|+|++++++ ++.|++||+.+++.+..+. ....+.+++|+|||++|++++ ++.|
T Consensus 231 ~~~~~~~~~~~~~~~~--~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~---~~~~~~~~~~s~dg~~l~~~~~~~~i 303 (337)
T 1pby_B 231 MAMREVRIMDVFYFST--AVNPAKTRAFGA--YNVLESFDLEKNASIKRVP---LPHSYYSVNVSTDGSTVWLGGALGDL 303 (337)
T ss_dssp EEEEEEEECSSCEEEE--EECTTSSEEEEE--ESEEEEEETTTTEEEEEEE---CSSCCCEEEECTTSCEEEEESBSSEE
T ss_pred ceEeecCCCCCceeeE--EECCCCCEEEEe--CCeEEEEECCCCcCcceec---CCCceeeEEECCCCCEEEEEcCCCcE
Confidence 64 1223333334444 899999999988 7999999999998888776 234678999999999999988 9999
Q ss_pred EEEEcccc
Q psy18231 528 KLWTAEED 535 (540)
Q Consensus 528 ~iw~~~~~ 535 (540)
.+||++++
T Consensus 304 ~v~d~~~~ 311 (337)
T 1pby_B 304 AAYDAETL 311 (337)
T ss_dssp EEEETTTC
T ss_pred EEEECcCC
Confidence 99999765
|
| >1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 | Back alignment and structure |
|---|
Probab=99.93 E-value=1e-24 Score=228.60 Aligned_cols=342 Identities=11% Similarity=0.050 Sum_probs=219.3
Q ss_pred Ccceeccccchhhhhhcccccceeeeeccccccee--ee-eec---CeEEEEeCCCCCEEEEeeCC---------CcEEE
Q psy18231 126 HPLLFSLPRTITRILYELPKEWSIRVYRPLTVNRE--LF-VLS---GLMHTRFPVDGSYCLTCGSD---------KKIKL 190 (540)
Q Consensus 126 ~~~~~s~~~~~~~~~~~~~~~~~i~~~~~~~~~~~--~~-h~~---~v~~v~~spdg~~lat~~~d---------g~i~i 190 (540)
..+.|+++.. +++. +.+++|++|+..+.... .. |.. .|.+++|||||++|++++.+ +.+.+
T Consensus 20 ~~~~~spdg~---~~~~-~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~ 95 (723)
T 1xfd_A 20 PEAKWISDTE---FIYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVL 95 (723)
T ss_dssp CCCCBSSSSC---BCCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEE
T ss_pred cccEEcCCCc---EEEE-eCCCCEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEE
Confidence 3456666643 4444 67789999998876532 22 222 39999999999999998764 78889
Q ss_pred EcCCCCeeEEEee---cCCcceeEEEEeeCCCeEEEeeCCCeEEEEEcCCCceeEeccccCCce----------------
Q psy18231 191 WNPYRNLLLKTYG---GHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPVRRWREHASKV---------------- 251 (540)
Q Consensus 191 wd~~~~~~~~~~~---~h~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v---------------- 251 (540)
||+.+++. ..+. +|...+..++|||||++||.++. +.|.+||+.+++.......+...+
T Consensus 96 ~d~~~~~~-~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~ 173 (723)
T 1xfd_A 96 SKIPHGDP-QSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILK 173 (723)
T ss_dssp EESSSCCC-EECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSS
T ss_pred EECCCCce-EeccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCCceEEEecCCCCCceECcccceeEEEEecc
Confidence 99998876 3343 34556899999999999999886 799999999988776655544333
Q ss_pred --eEEEECCCCCEEEEecCC-CcEEEEEecCCCCCCcchhhhhHhhhhcCCceeEEEEeecccccccccCceeeEEEeee
Q psy18231 252 --TCVKFNEDSSVVISGSQD-NTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFR 328 (540)
Q Consensus 252 --~~~~~~~~~~~l~s~~~d-g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (540)
.+++|+|||++|++++.| +.+.+|++....... ... +..+.+...+.
T Consensus 174 ~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~-------------~~~---~~~~~~~~~G~-------------- 223 (723)
T 1xfd_A 174 THIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSI-------------YPT---VKPYHYPKAGS-------------- 223 (723)
T ss_dssp SSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSS-------------SCC---CEEEECCBTTS--------------
T ss_pred CcceEEECCCCCEEEEEEECCCccceEEeeccCCcC-------------CCc---ceeccCCCCCC--------------
Confidence 789999999999988765 467888875432100 000 00111110000
Q ss_pred ecccccceeeeeeccceeEEEeecccceecccccccccccchhhhhhcccccEEEEEecC--CeeEeeeC----CCeEEE
Q psy18231 329 CKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEARDSITSVHVSD--HEILTASL----DCRIRR 402 (540)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~--~~l~~~~~----dg~i~i 402 (540)
......+.+++..+......+.. ......+...+..++|+| +++++.+. +..|++
T Consensus 224 ------------~~~~~~l~~~d~~~~~~~~~l~~-------~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~ 284 (723)
T 1xfd_A 224 ------------ENPSISLHVIGLNGPTHDLEMMP-------PDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTL 284 (723)
T ss_dssp ------------CCCEEEEEEEESSSSCCCEECCC-------CCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEE
T ss_pred ------------CCCeeEEEEEECCCCceeEEeeC-------CccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEE
Confidence 01123445555443321111100 001223467889999999 45545432 367999
Q ss_pred EeCCCCceEEeeeC---Cce----EEEEEecCCcEEEe--ecCCC------eEEEEe-ccccch--hhhhccCcCCcceE
Q psy18231 403 YDIRTGNLVTDYVG---EPI----VDACFTRDCQCILT--CSTDE------CLRLFD-KATGEL--LEEYKGHKSGDFRI 464 (540)
Q Consensus 403 wd~~~~~~~~~~~~---~~i----~~~~~sp~~~~l~~--~~~dg------~i~i~d-~~~~~~--~~~~~~~~~~v~~~ 464 (540)
||+.+++....+.. ..+ ..++|+|||+.|+. +..++ .|++|| ...++. ...+..+...+...
T Consensus 285 ~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~~ 364 (723)
T 1xfd_A 285 CDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKI 364 (723)
T ss_dssp EETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEE
T ss_pred EeCCCCcceEEEEeccCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEeecCCeEEEee
Confidence 99999887655432 223 37899999997775 44566 577788 344441 45554333333221
Q ss_pred EEEecCCCCeEEEeeCC---CcEEEEEecCCc--ceeEEEec-ccceeeeEEEEcCCCcEEEeec
Q psy18231 465 ECCLDSKDSQIFCGSSD---GKIYKWQLVDSS--QISTLIHS-VGKAVVNSLCSHPTRKHIMSAC 523 (540)
Q Consensus 465 ~~~~s~~~~~l~s~s~d---g~i~iwd~~~~~--~~~~~~~~-~~~~~v~~l~~s~d~~~l~s~~ 523 (540)
.+|+|||++|+..+.+ +.+++|++.... ....+... .|...+..++|+|||++|+...
T Consensus 365 -~~~spdg~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~spdg~~l~~~~ 428 (723)
T 1xfd_A 365 -LAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNFNRQCLSCDLVENCTYFSASFSHSMDFFLLKC 428 (723)
T ss_dssp -EEEETTTTEEEEEESSSCTTCCEEEEECSSTTCCCBCSSTTSSSSCCCCEEEECTTSSEEEEEC
T ss_pred -eEEcCCCCEEEEEEcCCCCcceEEEEEeCCCCCCcceecccccCCCCeEEEEECCCCCEEEEEc
Confidence 3799999998766555 789999986532 33333310 1567789999999999888754
|
| >1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* | Back alignment and structure |
|---|
Probab=99.92 E-value=3.7e-23 Score=196.64 Aligned_cols=263 Identities=9% Similarity=0.018 Sum_probs=191.5
Q ss_pred EEEeCCCCCEEEEeeCCCcEEEEcCCCCeeEEEeecCC-cceeEEEEeeCCCeEE-EeeCCCeEEEEEcCCCceeEeccc
Q psy18231 169 HTRFPVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHA-HEVNDATAACDSSQIA-SGASDKSVILWEVTTGQPVRRWRE 246 (540)
Q Consensus 169 ~v~~spdg~~lat~~~dg~i~iwd~~~~~~~~~~~~h~-~~v~~l~~sp~~~~l~-s~s~dg~i~iwd~~~~~~~~~~~~ 246 (540)
.++++++++++++++.+++|.+||+.+++.+..+..+. ..+..++|+|++++++ +...++.|.+||+.+++.+..+..
T Consensus 4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~ 83 (349)
T 1jmx_B 4 GPALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANL 83 (349)
T ss_dssp CCCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEES
T ss_pred cccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEc
Confidence 45788999999999999999999999999988887543 2578999999998654 556789999999999988776653
Q ss_pred cC------CceeEEEECCCCCEEEEecCC------------CcEEEEEecCCCCCCcchhhhhHhhhhcCCceeEEEEee
Q psy18231 247 HA------SKVTCVKFNEDSSVVISGSQD------------NTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLV 308 (540)
Q Consensus 247 h~------~~v~~~~~~~~~~~l~s~~~d------------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (540)
+. ..+..++|+|+|++|++++.+ +.|.+||+.+++.....
T Consensus 84 ~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~---------------------- 141 (349)
T 1jmx_B 84 SSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPV---------------------- 141 (349)
T ss_dssp CCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCS----------------------
T ss_pred ccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCcccccee----------------------
Confidence 22 337899999999999998865 89999999875410000
Q ss_pred cccccccccCceeeEEEeeeecccccceeeeeeccceeEEEeecccceecccccccccccchhhhhhcccccEEEEEecC
Q psy18231 309 KSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEARDSITSVHVSD 388 (540)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~ 388 (540)
....+...+.+++|+|
T Consensus 142 ----------------------------------------------------------------~~~~~~~~~~~~~~s~ 157 (349)
T 1jmx_B 142 ----------------------------------------------------------------RTFPMPRQVYLMRAAD 157 (349)
T ss_dssp ----------------------------------------------------------------EEEECCSSCCCEEECT
T ss_pred ----------------------------------------------------------------eeccCCCcccceeECC
Confidence 0011223466788888
Q ss_pred -CeeEeeeCCCeEEEEeCCCCceEEeeeCC--------------------------ceEEEEEecCCc-----------E
Q psy18231 389 -HEILTASLDCRIRRYDIRTGNLVTDYVGE--------------------------PIVDACFTRDCQ-----------C 430 (540)
Q Consensus 389 -~~l~~~~~dg~i~iwd~~~~~~~~~~~~~--------------------------~i~~~~~sp~~~-----------~ 430 (540)
..+++++. .|.+||+.+++.+..+..+ ....+++++++. +
T Consensus 158 dg~l~~~~~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 235 (349)
T 1jmx_B 158 DGSLYVAGP--DIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGY 235 (349)
T ss_dssp TSCEEEESS--SEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEE
T ss_pred CCcEEEccC--cEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeE
Confidence 33665543 4999999999887766532 345567766542 2
Q ss_pred EEeecCCCeEEEEeccccchhhhhccCcCCcceEEEEecC-CCCeEEEeeCCCcEEEEEecCCcceeEEEecccceeeeE
Q psy18231 431 ILTCSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLDS-KDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNS 509 (540)
Q Consensus 431 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~s~-~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~ 509 (540)
+.....++.+++|+... +......+ +++| ++++++++ ++.|++||+.+++.+..+. ....+.+
T Consensus 236 ~~~~~~~~~~~~~~~~~---------~~~~~~~~--~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~---~~~~~~~ 299 (349)
T 1jmx_B 236 LSVDLKTGKTHTQEFAD---------LTELYFTG--LRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAAN---LDHTYYC 299 (349)
T ss_dssp EEEETTTCCEEEEEEEE---------CSSCEEEE--EECSSCTTEEEEE--ESEEEEEETTTTEEEEEEE---CSSCCCE
T ss_pred EEEeccCCcEEeccccc---------CCCcceee--EecCCCCCEEEEE--cCeEEEEECccCeEEEEEc---CCCCccc
Confidence 22333445566665532 22333344 8999 99999888 8899999999998888876 2345789
Q ss_pred EEEcCCCcEEEeec-CCeeEEEEcccc
Q psy18231 510 LCSHPTRKHIMSAC-GNNVKLWTAEED 535 (540)
Q Consensus 510 l~~s~d~~~l~s~~-d~~i~iw~~~~~ 535 (540)
++|+|++++|++++ ++.|++||++++
T Consensus 300 ~~~s~dg~~l~~~~~~~~v~v~d~~~~ 326 (349)
T 1jmx_B 300 VAFDKKGDKLYLGGTFNDLAVFNPDTL 326 (349)
T ss_dssp EEECSSSSCEEEESBSSEEEEEETTTT
T ss_pred eEECCCCCEEEEecCCCeEEEEecccc
Confidence 99999999888888 999999999764
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
Probab=99.92 E-value=4e-23 Score=194.95 Aligned_cols=271 Identities=7% Similarity=0.029 Sum_probs=193.1
Q ss_pred hhhhhcccccceeeeecccccceee---eeecCeEEEEeCCCCCEEEEeeC-CCcEEEEcCCCCee-EEEeecCCcceeE
Q psy18231 137 TRILYELPKEWSIRVYRPLTVNREL---FVLSGLMHTRFPVDGSYCLTCGS-DKKIKLWNPYRNLL-LKTYGGHAHEVND 211 (540)
Q Consensus 137 ~~~~~~~~~~~~i~~~~~~~~~~~~---~h~~~v~~v~~spdg~~lat~~~-dg~i~iwd~~~~~~-~~~~~~h~~~v~~ 211 (540)
..++.....++.|++|+..+..... .+...+ +++|+|||++|++++. ++.|.+||+.+++. ...+..+..+..+
T Consensus 10 ~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~ 88 (331)
T 3u4y_A 10 NFGIVVEQHLRRISFFSTDTLEILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEGQSSMAD 88 (331)
T ss_dssp CEEEEEEGGGTEEEEEETTTCCEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEECSSCCCC
T ss_pred CEEEEEecCCCeEEEEeCcccceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecccCCCCccc
Confidence 3444556677899999987654322 234456 9999999997776665 88999999999987 7777777777666
Q ss_pred EEEeeCCCeEEEeeCCC---eEEEEEcCCCceeEeccccCCceeEEEECCCCCEEEEe-cCCCc-EEEEEecCCCCCCcc
Q psy18231 212 ATAACDSSQIASGASDK---SVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISG-SQDNT-VMMWDVKSRSHHPIQ 286 (540)
Q Consensus 212 l~~sp~~~~l~s~s~dg---~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~~dg~-i~iwd~~~~~~~~~~ 286 (540)
++|+|++++|+++..++ .|.+||+.+++.+..+.. .....+++|+|+|++++++ ..++. |.+|++..... ..
T Consensus 89 ~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~--~~ 165 (331)
T 3u4y_A 89 VDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPI-PYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGV--LF 165 (331)
T ss_dssp EEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEEC-CTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCC--EE
T ss_pred eEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEEC-CCCccceEECCCCCEEEEEecCCCceEEEEEECCCCc--Ee
Confidence 99999999999665553 899999999988887754 4456999999999865554 55578 99999975431 00
Q ss_pred hhhhhHhhhhcCCceeEEEEeecccccccccCceeeEEEeeeecccccceeeeeeccceeEEEeecccceeccccccccc
Q psy18231 287 VRCLNEALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISI 366 (540)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (540)
.. .
T Consensus 166 ----------------~~------------------------------------------------~------------- 168 (331)
T 3u4y_A 166 ----------------DT------------------------------------------------G------------- 168 (331)
T ss_dssp ----------------EE------------------------------------------------E-------------
T ss_pred ----------------ec------------------------------------------------C-------------
Confidence 00 0
Q ss_pred ccchhhhhhcccccEEEEEecC--Cee-EeeeCCCeEEEEeCCCCce---EEeeeC-CceEEEEEecCCcEEEeec-CCC
Q psy18231 367 HNSCFQALKEARDSITSVHVSD--HEI-LTASLDCRIRRYDIRTGNL---VTDYVG-EPIVDACFTRDCQCILTCS-TDE 438 (540)
Q Consensus 367 ~~~~~~~~~~~~~~v~~l~~~~--~~l-~~~~~dg~i~iwd~~~~~~---~~~~~~-~~i~~~~~sp~~~~l~~~~-~dg 438 (540)
.........+..++|+| +++ +++..++.|.+||+.+++. +..+.. ..+..++|+|+|+++++++ .++
T Consensus 169 -----~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~ 243 (331)
T 3u4y_A 169 -----QEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVGTNNLPGTIVVSRDGSTVYVLTESTV 243 (331)
T ss_dssp -----EEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEECSSCCCCEEECTTSSEEEEECSSEE
T ss_pred -----CccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeeccCCCCCceEEECCCCCEEEEEEcCCC
Confidence 00001223467889998 444 4555789999999999887 666654 5678999999999776554 578
Q ss_pred eEEEEeccccch--hhhhccC----cCCcce-EEEEecCCCCeEEEee-CCCcEEEEEecCCc
Q psy18231 439 CLRLFDKATGEL--LEEYKGH----KSGDFR-IECCLDSKDSQIFCGS-SDGKIYKWQLVDSS 493 (540)
Q Consensus 439 ~i~i~d~~~~~~--~~~~~~~----~~~v~~-~~~~~s~~~~~l~s~s-~dg~i~iwd~~~~~ 493 (540)
.|.+||..+++. +..+..+ ...... -.++|+|||++|++++ .++.|.+||+.+..
T Consensus 244 ~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~ 306 (331)
T 3u4y_A 244 DVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISRELKVFTISGKV 306 (331)
T ss_dssp EEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEETTSCE
T ss_pred EEEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEEEEecCCCCcEEEEEecCCc
Confidence 899999998876 3222221 222221 1138999999876555 56699999987543
|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.92 E-value=1.1e-23 Score=195.09 Aligned_cols=248 Identities=14% Similarity=0.037 Sum_probs=187.8
Q ss_pred ccccceeeeecccccc--eeeeeecCeEEEEeCCCCCEEEEeeCCCcEEEEcCCC-CeeEEEeecC-CcceeEEEEeeCC
Q psy18231 143 LPKEWSIRVYRPLTVN--RELFVLSGLMHTRFPVDGSYCLTCGSDKKIKLWNPYR-NLLLKTYGGH-AHEVNDATAACDS 218 (540)
Q Consensus 143 ~~~~~~i~~~~~~~~~--~~~~h~~~v~~v~~spdg~~lat~~~dg~i~iwd~~~-~~~~~~~~~h-~~~v~~l~~sp~~ 218 (540)
.+.+..|++|+..+.. ....|.+.|.+++|+|||++|++++ ++.|.+||+.+ ++.......| ...+.+++|+|++
T Consensus 18 ~~~~~~i~~~d~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg 96 (297)
T 2ojh_A 18 GSMRSSIEIFNIRTRKMRVVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNNDHGISPDG 96 (297)
T ss_dssp CCCCEEEEEEETTTTEEEEEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCSCCEECTTS
T ss_pred CCcceeEEEEeCCCCceeeeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccccccccccceEECCCC
Confidence 3567889999987654 3466889999999999999999987 88999999998 8777666665 4788999999999
Q ss_pred CeEEEee--CCCeEEEEEc--CCCceeEeccccCCceeEEEECCCCCEEE-EecCCCcEEEEEecCCCCCCcchhhhhHh
Q psy18231 219 SQIASGA--SDKSVILWEV--TTGQPVRRWREHASKVTCVKFNEDSSVVI-SGSQDNTVMMWDVKSRSHHPIQVRCLNEA 293 (540)
Q Consensus 219 ~~l~s~s--~dg~i~iwd~--~~~~~~~~~~~h~~~v~~~~~~~~~~~l~-s~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 293 (540)
++|++++ .++...||.+ .+++ ...+..+. .+..++|+|++++|+ +++.++.+++|+++.....
T Consensus 97 ~~l~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~-~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~---------- 164 (297)
T 2ojh_A 97 ALYAISDKVEFGKSAIYLLPSTGGT-PRLMTKNL-PSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGV---------- 164 (297)
T ss_dssp SEEEEEECTTTSSCEEEEEETTCCC-CEECCSSS-SEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCC----------
T ss_pred CEEEEEEeCCCCcceEEEEECCCCc-eEEeecCC-CccceEECCCCCEEEEEECCCCceEEEEEECCCCc----------
Confidence 9999998 3345555554 4444 34444333 489999999999877 7788999999997543210
Q ss_pred hhhcCCceeEEEEeecccccccccCceeeEEEeeeecccccceeeeeeccceeEEEeecccceecccccccccccchhhh
Q psy18231 294 LKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQA 373 (540)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (540)
...
T Consensus 165 -----------------------------------------------------------------------------~~~ 167 (297)
T 2ojh_A 165 -----------------------------------------------------------------------------ETR 167 (297)
T ss_dssp -----------------------------------------------------------------------------EEE
T ss_pred -----------------------------------------------------------------------------ceE
Confidence 002
Q ss_pred hhcccccEEEEEecC--CeeEeee-CCCeEEEEeCC-CCceEEeeeC--CceEEEEEecCCcEEEeecCC----------
Q psy18231 374 LKEARDSITSVHVSD--HEILTAS-LDCRIRRYDIR-TGNLVTDYVG--EPIVDACFTRDCQCILTCSTD---------- 437 (540)
Q Consensus 374 ~~~~~~~v~~l~~~~--~~l~~~~-~dg~i~iwd~~-~~~~~~~~~~--~~i~~~~~sp~~~~l~~~~~d---------- 437 (540)
+..+...+.+++|+| +.+++++ .++.+++|+++ .+.....+.. ..+..++|+|+|++|++++.+
T Consensus 168 ~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~ 247 (297)
T 2ojh_A 168 LTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDL 247 (297)
T ss_dssp CCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSE
T ss_pred cccCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEecCCcccCCeEECCCCCEEEEEEcCCCCCcccccC
Confidence 334566788999998 5566555 58999999886 4445555543 468889999999999888765
Q ss_pred -CeEEEEeccccch--hhhhccCcCCcceEEEEecCCCCeEEEeeCCC
Q psy18231 438 -ECLRLFDKATGEL--LEEYKGHKSGDFRIECCLDSKDSQIFCGSSDG 482 (540)
Q Consensus 438 -g~i~i~d~~~~~~--~~~~~~~~~~v~~~~~~~s~~~~~l~s~s~dg 482 (540)
+.|++||+.+++. +..+.+|...+..+ +|+|++++|++++.+.
T Consensus 248 ~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~--~~spdg~~l~~~~~~~ 293 (297)
T 2ojh_A 248 DVRVQLMDMDGGNVETLFDLFGGQGTMNSP--NWSPDGDEFAYVRYFP 293 (297)
T ss_dssp EEEEEEEETTSCSCEEEEEEEESTTTSCSC--CBCTTSSEEEEEEECC
T ss_pred ceEEEEEecCCCCceeeeccCCCCcccccc--eECCCCCEEEEEEecc
Confidence 5699999988765 33444777778777 8999999998887654
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=99.91 E-value=3e-22 Score=190.27 Aligned_cols=269 Identities=10% Similarity=0.108 Sum_probs=179.4
Q ss_pred CCcEEEEcC--CCCeeEE-EeecCCcceeEEEEeeCCCeEEEeeC---CCeEEEEEcCCCc--eeEeccccCCceeEEEE
Q psy18231 185 DKKIKLWNP--YRNLLLK-TYGGHAHEVNDATAACDSSQIASGAS---DKSVILWEVTTGQ--PVRRWREHASKVTCVKF 256 (540)
Q Consensus 185 dg~i~iwd~--~~~~~~~-~~~~h~~~v~~l~~sp~~~~l~s~s~---dg~i~iwd~~~~~--~~~~~~~h~~~v~~~~~ 256 (540)
++.|.+|++ .+++... ....+...+..++|+|||+ |++++. ++.|.+||+.+++ .+..+..+...+..++|
T Consensus 15 ~~~i~v~~~d~~tg~~~~~~~~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~ 93 (347)
T 3hfq_A 15 SQGIYQGTLDTTAKTLTNDGLLAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAV 93 (347)
T ss_dssp CCEEEEEEEETTTTEEEEEEEEEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEE
T ss_pred CCCEEEEEEcCCCCeEEEeeeeeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEE
Confidence 456777755 4565433 2334567788899999999 555544 6899999997765 34444567888999999
Q ss_pred CCCCCEEEEec-CCCcEEEEEecCCCC-CCcchhhhhHhhhhcCCceeEEEEeecccccccccCceeeEEEeeeeccccc
Q psy18231 257 NEDSSVVISGS-QDNTVMMWDVKSRSH-HPIQVRCLNEALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNG 334 (540)
Q Consensus 257 ~~~~~~l~s~~-~dg~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (540)
+|++++|++++ .++.|.+|++..... ..+.
T Consensus 94 spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~------------------------------------------------ 125 (347)
T 3hfq_A 94 DEARQLVYSANYHKGTAEVMKIAADGALTLTD------------------------------------------------ 125 (347)
T ss_dssp ETTTTEEEEEETTTTEEEEEEECTTSCEEEEE------------------------------------------------
T ss_pred CCCCCEEEEEeCCCCEEEEEEeCCCCCeeecc------------------------------------------------
Confidence 99999888887 679999999964221 0000
Q ss_pred ceeeeeeccceeEEEeecccceecccccccccccchhhhhhcccccEEEEEecC--CeeEeeeCCCeEEEEeCC-CCceE
Q psy18231 335 LLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEARDSITSVHVSD--HEILTASLDCRIRRYDIR-TGNLV 411 (540)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~--~~l~~~~~dg~i~iwd~~-~~~~~ 411 (540)
.....+. . . ....+...+.+++|+| +++++...++.|.+||+. +++..
T Consensus 126 --------------~~~~~~~------------~-p--~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~ 176 (347)
T 3hfq_A 126 --------------TVQHSGH------------G-P--RPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLS 176 (347)
T ss_dssp --------------EEECCCC------------C-S--STTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEE
T ss_pred --------------eeecCCC------------C-C--CccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEE
Confidence 0000000 0 0 0111234578899998 645555668899999998 55433
Q ss_pred E--eee---CCceEEEEEecCCcEEEe-ecCCCeEEEEeccc--cch--hhhhccCcCC----cceEEEEecCCCCeE-E
Q psy18231 412 T--DYV---GEPIVDACFTRDCQCILT-CSTDECLRLFDKAT--GEL--LEEYKGHKSG----DFRIECCLDSKDSQI-F 476 (540)
Q Consensus 412 ~--~~~---~~~i~~~~~sp~~~~l~~-~~~dg~i~i~d~~~--~~~--~~~~~~~~~~----v~~~~~~~s~~~~~l-~ 476 (540)
. .+. +.....++|+|||+++++ ...++.|.+|++.. ++. +..+...... .....++|+|||++| +
T Consensus 177 ~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v 256 (347)
T 3hfq_A 177 EQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYV 256 (347)
T ss_dssp EEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEE
T ss_pred EeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEE
Confidence 2 111 246788999999996655 56789999999874 432 2222222111 122334899999987 4
Q ss_pred EeeCCCcEEEEEecCC---cceeEEEecccceeeeEEEEcCCCcEEEeec--CCeeEEEEcc
Q psy18231 477 CGSSDGKIYKWQLVDS---SQISTLIHSVGKAVVNSLCSHPTRKHIMSAC--GNNVKLWTAE 533 (540)
Q Consensus 477 s~s~dg~i~iwd~~~~---~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~--d~~i~iw~~~ 533 (540)
+...++.|.+|++... +.+..+. .+...+..++|+|||++|++++ ++.|.+|+++
T Consensus 257 ~~~~~~~v~v~~~~~~g~~~~~~~~~--~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d 316 (347)
T 3hfq_A 257 SNRGYNTLAVFAVTADGHLTLIQQIS--TEGDFPRDFDLDPTEAFVVVVNQNTDNATLYARD 316 (347)
T ss_dssp EEETTTEEEEEEECGGGCEEEEEEEE--CSSSCCCEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred EeCCCCEEEEEEECCCCcEEEeEEEe--cCCCCcCeEEECCCCCEEEEEEcCCCcEEEEEEe
Confidence 5567899999999732 3344444 5566789999999999888876 5899999664
|
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A | Back alignment and structure |
|---|
Probab=99.91 E-value=2.1e-23 Score=212.55 Aligned_cols=263 Identities=10% Similarity=0.048 Sum_probs=191.9
Q ss_pred ecCeEEEEeCCCCCEEEEeeC-CCcEEEEcCCCCeeEEEeecCC-cceeEEEEeeCCCeEEEeeC---CCeEEEEEcCC-
Q psy18231 164 LSGLMHTRFPVDGSYCLTCGS-DKKIKLWNPYRNLLLKTYGGHA-HEVNDATAACDSSQIASGAS---DKSVILWEVTT- 237 (540)
Q Consensus 164 ~~~v~~v~~spdg~~lat~~~-dg~i~iwd~~~~~~~~~~~~h~-~~v~~l~~sp~~~~l~s~s~---dg~i~iwd~~~- 237 (540)
..+|.+++|+|||++||+++. ||+++||++.+++.. .+..|. ..+.+++|+|| +.+++++. +...++|.+..
T Consensus 21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~-~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~ 98 (582)
T 3o4h_A 21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETV-KLNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNTS 98 (582)
T ss_dssp HSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEE-ECCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEETT
T ss_pred ccchheeecCCCCCeEEEEEccCCceeEEEEcCCCcE-eeecccccccccccCCCC-eEEEEeccCCCCcceEEEEEecc
Confidence 457999999999999998876 999999998666654 455455 68999999999 77777765 45566765543
Q ss_pred --CceeEeccccCCceeEEEECCCCC--EEEEecCCCcEEEEEecCCCCCCcchhhhhHhhhhcCCceeEEEEeeccccc
Q psy18231 238 --GQPVRRWREHASKVTCVKFNEDSS--VVISGSQDNTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKN 313 (540)
Q Consensus 238 --~~~~~~~~~h~~~v~~~~~~~~~~--~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (540)
+... .+..+. .+...+|+|+++ .+++++. +.+.+||+.+++...
T Consensus 99 ~~g~~~-~l~~~~-~~~~~~~s~dg~~~~~~s~~~-~~~~l~d~~~g~~~~----------------------------- 146 (582)
T 3o4h_A 99 RPGEEQ-RLEAVK-PMRILSGVDTGEAVVFTGATE-DRVALYALDGGGLRE----------------------------- 146 (582)
T ss_dssp STTCCE-ECTTSC-SBEEEEEEECSSCEEEEEECS-SCEEEEEEETTEEEE-----------------------------
T ss_pred CCCccc-cccCCC-CceeeeeCCCCCeEEEEecCC-CCceEEEccCCcEEE-----------------------------
Confidence 3333 333222 344567788775 4444444 455699998765211
Q ss_pred ccccCceeeEEEeeeecccccceeeeeeccceeEEEeecccceecccccccccccchhhhhhcccccEEEEEecC--Cee
Q psy18231 314 HLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEARDSITSVHVSD--HEI 391 (540)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~--~~l 391 (540)
+..+.. .+++|+| +.+
T Consensus 147 ------------------------------------------------------------l~~~~~--~~~~~spDG~~l 164 (582)
T 3o4h_A 147 ------------------------------------------------------------LARLPG--FGFVSDIRGDLI 164 (582)
T ss_dssp ------------------------------------------------------------EEEESS--CEEEEEEETTEE
T ss_pred ------------------------------------------------------------eecCCC--ceEEECCCCCEE
Confidence 011111 5677777 778
Q ss_pred EeeeCC----CeEEEEeCCCCceEEeee-CCceEEEEEecCCcEEEeecCCC--eEEEEeccccchhhhhccCcCCcceE
Q psy18231 392 LTASLD----CRIRRYDIRTGNLVTDYV-GEPIVDACFTRDCQCILTCSTDE--CLRLFDKATGELLEEYKGHKSGDFRI 464 (540)
Q Consensus 392 ~~~~~d----g~i~iwd~~~~~~~~~~~-~~~i~~~~~sp~~~~l~~~~~dg--~i~i~d~~~~~~~~~~~~~~~~v~~~ 464 (540)
++++.+ +.|++||+.+++...... ...+..++|||||++|+++..++ .|++||+.+++.. .+..|...+..+
T Consensus 165 a~~~~~~~~~~~i~~~d~~~g~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~~~~~~~~ 243 (582)
T 3o4h_A 165 AGLGFFGGGRVSLFTSNLSSGGLRVFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-DLELPSKDFSSY 243 (582)
T ss_dssp EEEEEEETTEEEEEEEETTTCCCEEECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-ECCCSCSHHHHH
T ss_pred EEEEEcCCCCeEEEEEcCCCCCceEeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-EccCCCcChhhh
Confidence 877766 789999999887653322 25689999999999999888888 8999999988877 677776666555
Q ss_pred EEE--------ecCCCCeEEEeeCCCcEEEEEecCCcceeEEEecccceeeeEEEEcCCCcEEEeec-CC---eeEEEEc
Q psy18231 465 ECC--------LDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC-GN---NVKLWTA 532 (540)
Q Consensus 465 ~~~--------~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~-d~---~i~iw~~ 532 (540)
+ |+|||.++++++.|+++++|++ ++... .+.+.+.+++|+ +++++++++ +. .+.+|+.
T Consensus 244 --~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~--g~~~~-----~~~~~v~~~~~s-dg~~l~~~s~~~~p~~l~~~d~ 313 (582)
T 3o4h_A 244 --RPTAITWLGYLPDGRLAVVARREGRSAVFID--GERVE-----APQGNHGRVVLW-RGKLVTSHTSLSTPPRIVSLPS 313 (582)
T ss_dssp --CCSEEEEEEECTTSCEEEEEEETTEEEEEET--TEEEC-----CCSSEEEEEEEE-TTEEEEEEEETTEEEEEEEETT
T ss_pred --hhccccceeEcCCCcEEEEEEcCCcEEEEEE--CCeec-----cCCCceEEEEec-CCEEEEEEcCCCCCCeEEEEcC
Confidence 5 9999988999999999999998 65443 234678999999 999998877 64 4666665
Q ss_pred c
Q psy18231 533 E 533 (540)
Q Consensus 533 ~ 533 (540)
.
T Consensus 314 ~ 314 (582)
T 3o4h_A 314 G 314 (582)
T ss_dssp C
T ss_pred C
Confidence 4
|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* | Back alignment and structure |
|---|
Probab=99.91 E-value=1.1e-22 Score=192.19 Aligned_cols=284 Identities=10% Similarity=0.082 Sum_probs=192.0
Q ss_pred hhcccccceeeeeccccccee--eeeec---CeEEEEeCCCCCEEE-EeeCCCcEEEEcCCCCeeEEEeec-C----Ccc
Q psy18231 140 LYELPKEWSIRVYRPLTVNRE--LFVLS---GLMHTRFPVDGSYCL-TCGSDKKIKLWNPYRNLLLKTYGG-H----AHE 208 (540)
Q Consensus 140 ~~~~~~~~~i~~~~~~~~~~~--~~h~~---~v~~v~~spdg~~la-t~~~dg~i~iwd~~~~~~~~~~~~-h----~~~ 208 (540)
++....++.|++|+..+.... ..+.. .+..++|+|||++++ +++.++.|.+||+.+++.+..+.. + ...
T Consensus 4 ~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~ 83 (337)
T 1pby_B 4 ILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKS 83 (337)
T ss_dssp EEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEEC
T ss_pred EEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCccccccc
Confidence 445567788999998765432 23334 589999999998765 555678999999999998877753 2 236
Q ss_pred eeEEEEeeCCCeEEEee------------CCCeEEEEEcCCCceeEeccccCCceeEEEECCCCCEEEEecCCCcEEEEE
Q psy18231 209 VNDATAACDSSQIASGA------------SDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWD 276 (540)
Q Consensus 209 v~~l~~sp~~~~l~s~s------------~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd 276 (540)
+.+++|+|++++|++++ .++.|.+||+.+++.+..+.. ...+.+++|+|++++|+++ ++.|.+||
T Consensus 84 ~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~--~~~i~~~d 160 (337)
T 1pby_B 84 LFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PRQITMLAWARDGSKLYGL--GRDLHVMD 160 (337)
T ss_dssp TTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CSSCCCEEECTTSSCEEEE--SSSEEEEE
T ss_pred ccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeC-CCCcceeEECCCCCEEEEe--CCeEEEEE
Confidence 78899999999998886 579999999999888777654 4567889999999988887 68899999
Q ss_pred ecCCCCCCcchhhhhHhhhhcCCceeEEEEeecccccccccCceeeEEEeeeecccccceeeeeeccceeEEEeecccce
Q psy18231 277 VKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGST 356 (540)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (540)
+.+++..... ... . ... ....+.++......
T Consensus 161 ~~~~~~~~~~--~~~-------------------~--------------------~~~---~~~~s~dg~~l~~~----- 191 (337)
T 1pby_B 161 PEAGTLVEDK--PIQ-------------------S--------------------WEA---ETYAQPDVLAVWNQ----- 191 (337)
T ss_dssp TTTTEEEEEE--CST-------------------T--------------------TTT---TTBCCCBCCCCCCC-----
T ss_pred CCCCcEeeee--ecc-------------------c--------------------cCC---CceeCCCccEEeee-----
Confidence 9876521000 000 0 000 00000000000000
Q ss_pred ecccccccccccchhhhhhcccccE---EEEEecC--CeeEeeeCCCeEEEEeCCCCceEEeee----CCceEEEEEecC
Q psy18231 357 QIGDVTPISIHNSCFQALKEARDSI---TSVHVSD--HEILTASLDCRIRRYDIRTGNLVTDYV----GEPIVDACFTRD 427 (540)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~v---~~l~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~----~~~i~~~~~sp~ 427 (540)
......+ ....... .... ......|.+||+.+++.. .+. ...+.+++|+|+
T Consensus 192 ------------------~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~d~~~~~~~-~~~~~~~~~~~~~~~~s~d 251 (337)
T 1pby_B 192 ------------------HESSGVMATPFYTARKDIDPADP-TAYRTGLLTMDLETGEMA-MREVRIMDVFYFSTAVNPA 251 (337)
T ss_dssp ------------------CTTTTEEEEEEEEEBTTSCTTSG-GGEEEEEEEEETTTCCEE-EEEEEECSSCEEEEEECTT
T ss_pred ------------------ccCCCceeeeeeccccccccccc-cccccceEEEeCCCCCce-EeecCCCCCceeeEEECCC
Confidence 0000000 0000000 0000 001116899999998775 222 246788999999
Q ss_pred CcEEEeecCCCeEEEEeccccchhhhhccCcCCcceEEEEecCCCCeEEEeeCCCcEEEEEecCCcceeEEEe
Q psy18231 428 CQCILTCSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIH 500 (540)
Q Consensus 428 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~ 500 (540)
|++++++ ++.|++||+.+++.+..+..+. .+..+ +|+|+|++|++++.++.|++||+.+++.+..+..
T Consensus 252 g~~l~~~--~~~v~~~d~~~~~~~~~~~~~~-~~~~~--~~s~dg~~l~~~~~~~~i~v~d~~~~~~~~~~~~ 319 (337)
T 1pby_B 252 KTRAFGA--YNVLESFDLEKNASIKRVPLPH-SYYSV--NVSTDGSTVWLGGALGDLAAYDAETLEKKGQVDL 319 (337)
T ss_dssp SSEEEEE--ESEEEEEETTTTEEEEEEECSS-CCCEE--EECTTSCEEEEESBSSEEEEEETTTCCEEEEEEC
T ss_pred CCEEEEe--CCeEEEEECCCCcCcceecCCC-ceeeE--EECCCCCEEEEEcCCCcEEEEECcCCcEEEEEEc
Confidence 9999988 7999999999988877766443 34555 8999999999999999999999999999988873
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=5.2e-23 Score=214.92 Aligned_cols=282 Identities=9% Similarity=0.071 Sum_probs=191.7
Q ss_pred eEEEEeCCCCCEEEEeeCCCcEEEEcCCCCeeE-EEeecCC-----------------cceeEEEEeeCCCeEEEeeCCC
Q psy18231 167 LMHTRFPVDGSYCLTCGSDKKIKLWNPYRNLLL-KTYGGHA-----------------HEVNDATAACDSSQIASGASDK 228 (540)
Q Consensus 167 v~~v~~spdg~~lat~~~dg~i~iwd~~~~~~~-~~~~~h~-----------------~~v~~l~~sp~~~~l~s~s~dg 228 (540)
+..+.|+ |+.+++++.++ | +||+.+++.+ ..+..|. ..|.+++|+|| +.++.+. ++
T Consensus 28 ~~~~~w~--g~~~~~~~~~~-i-~~d~~tg~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd-~~~~~~~-~~ 101 (706)
T 2z3z_A 28 VVGLQWM--GDNYVFIEGDD-L-VFNKANGKSAQTTRFSAADLNALMPEGCKFQTTDAFPSFRTLDAGR-GLVVLFT-QG 101 (706)
T ss_dssp CTTCEEE--TTEEEEEETTE-E-EEEC-------CEEEEHHHHHTTC-----------CCCEEEEETTT-TEEEEEE-TT
T ss_pred CCCCcCc--CCeEEEEeCCc-E-EEECCCCcEeeEEeechhHhhhhccchhccccccccCceeEEECCC-CeEEEEE-CC
Confidence 4456677 55667777777 8 9999999873 4443333 46999999999 6665553 59
Q ss_pred eEEEEEcCCCceeEeccccCCceeEEEECCCCCEEEEecCCCcEEEEEecC-----CCCCCcchhhhhHhhhhcCCceeE
Q psy18231 229 SVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKS-----RSHHPIQVRCLNEALKEARDSITS 303 (540)
Q Consensus 229 ~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~-----~~~~~~~~~~~~~~~~~~~~~~~~ 303 (540)
.|++||+.+++... +..+...+.+++|+|||++|+++ .|+.|++||+.+ ++...+....
T Consensus 102 ~i~~~d~~~~~~~~-l~~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~-------------- 165 (706)
T 2z3z_A 102 GLVGFDMLARKVTY-LFDTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDG-------------- 165 (706)
T ss_dssp EEEEEETTTTEEEE-EECCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCCCEESCSCC--------------
T ss_pred EEEEEECCCCceEE-ccCCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCCcEEeccCC--------------
Confidence 99999998886654 44567789999999999999985 689999999987 5421110000
Q ss_pred EEEeecccccccccCceeeEEEeeeecccccceeeeeeccceeEEEeecccceecccccccccccchhhhhhcccccEEE
Q psy18231 304 VHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEARDSITS 383 (540)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 383 (540)
... ... +.. ....+...+.+
T Consensus 166 --------~~~---------------------------------~~~-----------------g~~--~~~ee~~~~~~ 185 (706)
T 2z3z_A 166 --------TET---------------------------------LVY-----------------GQA--VHQREFGIEKG 185 (706)
T ss_dssp --------BTT---------------------------------EEE-----------------SSC--CGGGCTTCCCS
T ss_pred --------CCC---------------------------------eEc-----------------ccc--hhhhhcCCCce
Confidence 000 000 000 11122344567
Q ss_pred EEecC--CeeEeee---------------------------------CCCeEEEEeCCCCceEEeee----CCceEEEEE
Q psy18231 384 VHVSD--HEILTAS---------------------------------LDCRIRRYDIRTGNLVTDYV----GEPIVDACF 424 (540)
Q Consensus 384 l~~~~--~~l~~~~---------------------------------~dg~i~iwd~~~~~~~~~~~----~~~i~~~~~ 424 (540)
+.|+| +.|++++ .+..|++||+.+++...... ...+..++|
T Consensus 186 ~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 265 (706)
T 2z3z_A 186 TFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSW 265 (706)
T ss_dssp EEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTCEEEEEEE
T ss_pred EEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCceeEeeEEE
Confidence 78887 6677766 44689999999887654442 246899999
Q ss_pred ecCCcEEEeecCCC-----eEEEEeccccchhhhhc-c-CcC---CcceEEEEecC--CCCeEEEeeCCCcEEEEEec-C
Q psy18231 425 TRDCQCILTCSTDE-----CLRLFDKATGELLEEYK-G-HKS---GDFRIECCLDS--KDSQIFCGSSDGKIYKWQLV-D 491 (540)
Q Consensus 425 sp~~~~l~~~~~dg-----~i~i~d~~~~~~~~~~~-~-~~~---~v~~~~~~~s~--~~~~l~s~s~dg~i~iwd~~-~ 491 (540)
+|||++|++++.++ .|++||+.+++....+. . +.. .+..+ +|+| ||+++++++.|+.+++|++. +
T Consensus 266 spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~--~~sp~~dg~~l~~~~~~g~~~l~~~~~~ 343 (706)
T 2z3z_A 266 SPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPL--TFLPGSNNQFIWQSRRDGWNHLYLYDTT 343 (706)
T ss_dssp CTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCC--EECTTCSSEEEEEECTTSSCEEEEEETT
T ss_pred ECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCc--eeecCCCCEEEEEEccCCccEEEEEECC
Confidence 99999999887765 89999999884333332 1 221 12344 7999 99999999999999999987 6
Q ss_pred CcceeEEEecccceeeeE-EEEcCCCcEEEeec--CC----eeEEEEccc
Q psy18231 492 SSQISTLIHSVGKAVVNS-LCSHPTRKHIMSAC--GN----NVKLWTAEE 534 (540)
Q Consensus 492 ~~~~~~~~~~~~~~~v~~-l~~s~d~~~l~s~~--d~----~i~iw~~~~ 534 (540)
++.+..+. .|...+.. ++|+||++.|+.++ ++ .|..|++.+
T Consensus 344 ~~~~~~l~--~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~ 391 (706)
T 2z3z_A 344 GRLIRQVT--KGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKG 391 (706)
T ss_dssp SCEEEECC--CSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTC
T ss_pred CCEEEecC--CCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCC
Confidence 67777776 67777776 89999998876655 44 555566554
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=99.90 E-value=1.1e-21 Score=186.21 Aligned_cols=246 Identities=10% Similarity=0.095 Sum_probs=172.1
Q ss_pred eeeecCeEEEEeCCCCCEEEEeeC---CCcEEEEcCCCCe--eEEEeecCCcceeEEEEeeCCCeEEEee-CCCeEEEEE
Q psy18231 161 LFVLSGLMHTRFPVDGSYCLTCGS---DKKIKLWNPYRNL--LLKTYGGHAHEVNDATAACDSSQIASGA-SDKSVILWE 234 (540)
Q Consensus 161 ~~h~~~v~~v~~spdg~~lat~~~---dg~i~iwd~~~~~--~~~~~~~h~~~v~~l~~sp~~~~l~s~s-~dg~i~iwd 234 (540)
..+...+..++|+|||+ |++++. ++.|.+|++.+++ .+..+..+...+..++|+|||++|++++ .++.|.+|+
T Consensus 36 ~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~ 114 (347)
T 3hfq_A 36 LAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVMK 114 (347)
T ss_dssp EEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred eeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEE
Confidence 34667888999999999 655544 6899999997765 4455556788899999999999988887 679999999
Q ss_pred cCC-Cc--eeEeccc---------cCCceeEEEECCCCCEEEEecCCCcEEEEEecC-CCCCCcchhhhhHhhhhcCCce
Q psy18231 235 VTT-GQ--PVRRWRE---------HASKVTCVKFNEDSSVVISGSQDNTVMMWDVKS-RSHHPIQVRCLNEALKEARDSI 301 (540)
Q Consensus 235 ~~~-~~--~~~~~~~---------h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~ 301 (540)
+.. +. .+..+.. +...+.+++|+|+++++++...++.|.+|++.. ++.....
T Consensus 115 ~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~--------------- 179 (347)
T 3hfq_A 115 IAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQS--------------- 179 (347)
T ss_dssp ECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEE---------------
T ss_pred eCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEee---------------
Confidence 963 32 2222221 123488999999999777777788999999983 3210000
Q ss_pred eEEEEeecccccccccCceeeEEEeeeecccccceeeeeeccceeEEEeecccceecccccccccccchhhhh-hccccc
Q psy18231 302 TSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQAL-KEARDS 380 (540)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 380 (540)
.. ......
T Consensus 180 -----------------------------------------------------------------------~~~~~~g~~ 188 (347)
T 3hfq_A 180 -----------------------------------------------------------------------VLTMEAGFG 188 (347)
T ss_dssp -----------------------------------------------------------------------EEECCTTCC
T ss_pred -----------------------------------------------------------------------eEEcCCCCC
Confidence 00 001224
Q ss_pred EEEEEecC--CeeEe-eeCCCeEEEEeCCC--Cce--EEeeeC--------CceEEEEEecCCcEEE-eecCCCeEEEEe
Q psy18231 381 ITSVHVSD--HEILT-ASLDCRIRRYDIRT--GNL--VTDYVG--------EPIVDACFTRDCQCIL-TCSTDECLRLFD 444 (540)
Q Consensus 381 v~~l~~~~--~~l~~-~~~dg~i~iwd~~~--~~~--~~~~~~--------~~i~~~~~sp~~~~l~-~~~~dg~i~i~d 444 (540)
+..++|+| +++++ ...++.|.+|+++. ++. +..+.. ..+..++|+|||++|+ +...++.|.+||
T Consensus 189 p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~ 268 (347)
T 3hfq_A 189 PRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFA 268 (347)
T ss_dssp EEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEE
T ss_pred CceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEE
Confidence 56789998 54444 56789999999874 443 222221 3488899999999874 555689999999
Q ss_pred cccc---chhhhhccCcCCcceEEEEecCCCCeEEEeeCC-CcEEEEEe--cCCcce
Q psy18231 445 KATG---ELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSD-GKIYKWQL--VDSSQI 495 (540)
Q Consensus 445 ~~~~---~~~~~~~~~~~~v~~~~~~~s~~~~~l~s~s~d-g~i~iwd~--~~~~~~ 495 (540)
+... +.+..+..+...+..+ +|+|||++|++++.+ +.|.+|++ .+++..
T Consensus 269 ~~~~g~~~~~~~~~~~~~~~~~~--~~spdg~~l~v~~~~~~~v~v~~~d~~tg~l~ 323 (347)
T 3hfq_A 269 VTADGHLTLIQQISTEGDFPRDF--DLDPTEAFVVVVNQNTDNATLYARDLTSGKLS 323 (347)
T ss_dssp ECGGGCEEEEEEEECSSSCCCEE--EECTTSSEEEEEETTTTEEEEEEECTTTCCEE
T ss_pred ECCCCcEEEeEEEecCCCCcCeE--EECCCCCEEEEEEcCCCcEEEEEEeCCCCeEE
Confidence 8732 4445555555555666 899999998888754 89999955 455543
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=7.4e-22 Score=188.00 Aligned_cols=250 Identities=5% Similarity=0.041 Sum_probs=192.4
Q ss_pred cceeeeecccccce--eeeeecCeEEEEeCCCCCEEEEe-eCCCcEEEEcCCCCeeEEEeecCCcc---------eeEEE
Q psy18231 146 EWSIRVYRPLTVNR--ELFVLSGLMHTRFPVDGSYCLTC-GSDKKIKLWNPYRNLLLKTYGGHAHE---------VNDAT 213 (540)
Q Consensus 146 ~~~i~~~~~~~~~~--~~~h~~~v~~v~~spdg~~lat~-~~dg~i~iwd~~~~~~~~~~~~h~~~---------v~~l~ 213 (540)
+..|.+|+..+... ...+...+..++|+|+|++++++ ..++.|.+||..+++.+..+..+... +.+++
T Consensus 68 ~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (353)
T 3vgz_A 68 GGVVYRLDPVTLEVTQAIHNDLKPFGATINNTTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELV 147 (353)
T ss_dssp SEEEEEECTTTCCEEEEEEESSCCCSEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEE
T ss_pred CccEEEEcCCCCeEEEEEecCCCcceEEECCCCCEEEEEecCCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEE
Confidence 67899999877543 33445668899999999966654 55799999999999998888765432 78899
Q ss_pred EeeCCCeEEEee--CCCeEEEEEcCCCceeEeccccCCceeEEEECCCCCEEEEecCCCcEEEEEecCCCCCCcchhhhh
Q psy18231 214 AACDSSQIASGA--SDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQVRCLN 291 (540)
Q Consensus 214 ~sp~~~~l~s~s--~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 291 (540)
|+|+++++++++ .++.|.+||+.+++.+..+..+...+..++|+|+++++++++.++.|.+||+.+++.....
T Consensus 148 ~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~----- 222 (353)
T 3vgz_A 148 ADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEGKRLYTTNADGELITIDTADNKILSRK----- 222 (353)
T ss_dssp EETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEE-----
T ss_pred ECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEE-----
Confidence 999999887776 4789999999999998888766777899999999999999999999999998876520000
Q ss_pred HhhhhcCCceeEEEEeecccccccccCceeeEEEeeeecccccceeeeeeccceeEEEeecccceecccccccccccchh
Q psy18231 292 EALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCF 371 (540)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (540)
.
T Consensus 223 -----------------------------------------------------------~-------------------- 223 (353)
T 3vgz_A 223 -----------------------------------------------------------K-------------------- 223 (353)
T ss_dssp -----------------------------------------------------------E--------------------
T ss_pred -----------------------------------------------------------E--------------------
Confidence 0
Q ss_pred hhhhcccccEEEEEecC--CeeEeee-CCCeEEEEeCCCCceEEeeeCCceEEEEEecCCcEEEeec-CCCeEEEEeccc
Q psy18231 372 QALKEARDSITSVHVSD--HEILTAS-LDCRIRRYDIRTGNLVTDYVGEPIVDACFTRDCQCILTCS-TDECLRLFDKAT 447 (540)
Q Consensus 372 ~~~~~~~~~v~~l~~~~--~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~-~dg~i~i~d~~~ 447 (540)
....++...+.+++++| +.+++++ .++.|.+||+.+++.+..+.......++|+|+|+++++++ .++.|.+||..+
T Consensus 224 ~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~ 303 (353)
T 3vgz_A 224 LLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAAPESLAVLFNPARNEAYVTHRQAGKVSVIDAKS 303 (353)
T ss_dssp CCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEECSSCCCEEEETTTTEEEEEETTTTEEEEEETTT
T ss_pred cCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCCceEEECCCCCEEEEEECCCCeEEEEECCC
Confidence 00112345677888987 5555554 4599999999999988887765557799999999665554 689999999999
Q ss_pred cchhhhhccCcCCcceEEEEecCCCCeEEEeeCCC
Q psy18231 448 GELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDG 482 (540)
Q Consensus 448 ~~~~~~~~~~~~~v~~~~~~~s~~~~~l~s~s~dg 482 (540)
++.+..+.... ....+ +|+|+|++|+++..++
T Consensus 304 ~~~~~~~~~~~-~~~~~--~~s~dg~~l~v~~~~~ 335 (353)
T 3vgz_A 304 YKVVKTFDTPT-HPNSL--ALSADGKTLYVSVKQK 335 (353)
T ss_dssp TEEEEEEECCS-EEEEE--EECTTSCEEEEEEECC
T ss_pred CeEEEEEecCC-CCCeE--EEcCCCCEEEEEEccc
Confidence 98887776544 33444 8999999877776654
|
| >1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.90 E-value=1.7e-22 Score=211.40 Aligned_cols=287 Identities=11% Similarity=0.079 Sum_probs=194.8
Q ss_pred EEEeCCCCCEEEEeeCCCcEEEEcCCCCeeEEEeecCCc---ceeEEEEeeCCCeEEEeeC---------CCeEEEEEcC
Q psy18231 169 HTRFPVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAH---EVNDATAACDSSQIASGAS---------DKSVILWEVT 236 (540)
Q Consensus 169 ~v~~spdg~~lat~~~dg~i~iwd~~~~~~~~~~~~h~~---~v~~l~~sp~~~~l~s~s~---------dg~i~iwd~~ 236 (540)
+++|+|||++++++ .|++|++||+.+++....+.+|.. .+.+++|||||++|++++. +++|++||+.
T Consensus 20 ~~~~s~dg~~~~~~-~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~ 98 (719)
T 1z68_A 20 FPNWISGQEYLHQS-ADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLS 98 (719)
T ss_dssp CCEESSSSEEEEEC-TTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETT
T ss_pred ccEECCCCeEEEEc-CCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECC
Confidence 67899999766655 599999999999988777766554 4999999999999998876 7899999999
Q ss_pred CCceeEeccccCCceeEEEECCCCCEEEEecCCCcEEEEEecCCCCCCcchhhhhHhhhhcCCceeEEEEeecccccccc
Q psy18231 237 TGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHLS 316 (540)
Q Consensus 237 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (540)
+++.+... .....+..++|+|||+.|+++. ++.|++||+.+++...+.... .. ..+
T Consensus 99 ~g~~~~~~-~l~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~~~-------~~--------------~~v- 154 (719)
T 1z68_A 99 NGEFVRGN-ELPRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQITFNG-------RE--------------NKI- 154 (719)
T ss_dssp TTEECCSS-CCCSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCCCC-------BT--------------TTE-
T ss_pred CCccccce-ecCcccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEecCC-------Cc--------------CCe-
Confidence 88763111 1135688999999999999886 789999999877631111000 00 000
Q ss_pred cCceeeEEEeeeecccccceeeeeeccceeEEEeecccceecccccccccccchhhhhhcccccEEEEEecC--CeeEee
Q psy18231 317 NGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEARDSITSVHVSD--HEILTA 394 (540)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~--~~l~~~ 394 (540)
+. |.. ..+ ....-.....+++|+| +.|+++
T Consensus 155 ---------------------------------~~--g~~------------~~v-~~ee~~~~~~~~~wSPDG~~la~~ 186 (719)
T 1z68_A 155 ---------------------------------FN--GIP------------DWV-YEEEMLATKYALWWSPNGKFLAYA 186 (719)
T ss_dssp ---------------------------------EE--SSC------------CHH-HHHHTTCSSCCEEECTTSSEEEEE
T ss_pred ---------------------------------Ec--ccc------------cce-eeeecccCcccEEECCCCCEEEEE
Confidence 00 000 000 0000001224677777 566666
Q ss_pred eCCC----------------------------------eEEEEeCCCCceE--Eee--------eCCceEEEEEecCCcE
Q psy18231 395 SLDC----------------------------------RIRRYDIRTGNLV--TDY--------VGEPIVDACFTRDCQC 430 (540)
Q Consensus 395 ~~dg----------------------------------~i~iwd~~~~~~~--~~~--------~~~~i~~~~~sp~~~~ 430 (540)
+.|. .|++||+.+++.. ..+ +...+..++||||+++
T Consensus 187 ~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~ 266 (719)
T 1z68_A 187 EFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERV 266 (719)
T ss_dssp EEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEE
T ss_pred EECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeE
Confidence 5442 7899999988752 111 1246899999999887
Q ss_pred EEeecCC----CeEEEEe----ccccchhhhh----ccCcCCcc-----eEEEEecCCCCeEEE--eeCCC--cEEEEEe
Q psy18231 431 ILTCSTD----ECLRLFD----KATGELLEEY----KGHKSGDF-----RIECCLDSKDSQIFC--GSSDG--KIYKWQL 489 (540)
Q Consensus 431 l~~~~~d----g~i~i~d----~~~~~~~~~~----~~~~~~v~-----~~~~~~s~~~~~l~s--~s~dg--~i~iwd~ 489 (540)
+++.... ..|.+|| ..+++....+ ..|...+. .+ .|+|||+.|+. ...+| .|++||+
T Consensus 267 ~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~spdg~~l~~~~~~~~g~~~l~~~~~ 344 (719)
T 1z68_A 267 CLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTP--VFSYDAISYYKIFSDKDGYKHIHYIKD 344 (719)
T ss_dssp EEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCC--EECTTSSCEEEEEECTTSCEEEEEESS
T ss_pred EEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCceEccccCCcc--EECCCCCeEEEEEEccCCceEEEEEEC
Confidence 7774432 3588899 8888877777 46766665 55 79999997654 44555 5777777
Q ss_pred cCCcceeEEEecccceeeeEEEEcCCCcEEEeec-C-----CeeEEEEccc
Q psy18231 490 VDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC-G-----NNVKLWTAEE 534 (540)
Q Consensus 490 ~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~-d-----~~i~iw~~~~ 534 (540)
.+++ ...+. .+...+..+.++ +++.|+..+ + +..++|.++.
T Consensus 345 ~~~~-~~~lt--~~~~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~~ 391 (719)
T 1z68_A 345 TVEN-AIQIT--SGKWEAINIFRV-TQDSLFYSSNEFEEYPGRRNIYRISI 391 (719)
T ss_dssp CSTT-CEECS--CSSSCEEEEEEE-CSSEEEEEESCGGGCTTCBEEEEEEC
T ss_pred CCCc-eEecc--cCceEEEEEEEE-eCCEEEEEEecCCCCCceEEEEEEeC
Confidence 6665 44554 455567777777 887777666 6 7899998864
|
| >1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.89 E-value=2.5e-22 Score=210.10 Aligned_cols=352 Identities=7% Similarity=0.004 Sum_probs=215.4
Q ss_pred cceeccccchhhhhhcccccceeeeecccccceee--eeec----CeEEEEeCCCCCEEEEeeC---------CCcEEEE
Q psy18231 127 PLLFSLPRTITRILYELPKEWSIRVYRPLTVNREL--FVLS----GLMHTRFPVDGSYCLTCGS---------DKKIKLW 191 (540)
Q Consensus 127 ~~~~s~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~--~h~~----~v~~v~~spdg~~lat~~~---------dg~i~iw 191 (540)
...++++. .+++. +.+++|++|+..+..... .+.. .+.+++|||||++||+++. ++.|++|
T Consensus 20 ~~~~s~dg---~~~~~-~~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~ 95 (719)
T 1z68_A 20 FPNWISGQ---EYLHQ-SADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIY 95 (719)
T ss_dssp CCEESSSS---EEEEE-CTTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEE
T ss_pred ccEECCCC---eEEEE-cCCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEE
Confidence 34455554 23333 347789999988765332 2222 3999999999999998876 6899999
Q ss_pred cCCCCeeEEEeecCCcceeEEEEeeCCCeEEEeeCCCeEEEEEcCCCceeEec-cccCCce-----------------eE
Q psy18231 192 NPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPVRRW-REHASKV-----------------TC 253 (540)
Q Consensus 192 d~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~-~~h~~~v-----------------~~ 253 (540)
|+.+++.+.... ....+..++|||||+.||.+. ++.|++||+.+++..... .++...| .+
T Consensus 96 d~~~g~~~~~~~-l~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~ 173 (719)
T 1z68_A 96 DLSNGEFVRGNE-LPRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYA 173 (719)
T ss_dssp ETTTTEECCSSC-CCSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCC
T ss_pred ECCCCcccccee-cCcccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCccc
Confidence 999887631111 135688999999999999986 789999999888765533 2333222 48
Q ss_pred EEECCCCCEEEEecCC-CcEEEEEecCCCCCCcchhhhhHhhhhcCCceeEEEEeecccccccccCceeeEEEeeeeccc
Q psy18231 254 VKFNEDSSVVISGSQD-NTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYL 332 (540)
Q Consensus 254 ~~~~~~~~~l~s~~~d-g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (540)
++|+|||++|++++.| +.+.+|.+....... . .....+.....+
T Consensus 174 ~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~-------------~---~~~~~~~yp~~g------------------- 218 (719)
T 1z68_A 174 LWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQ-------------Y---PRTINIPYPKAG------------------- 218 (719)
T ss_dssp EEECTTSSEEEEEEEECTTSCEEEEEECCSSS-------------S---CEEEEEECCBTT-------------------
T ss_pred EEECCCCCEEEEEEECCCCCceEEeeccCCCC-------------C---ccceeecCCCCC-------------------
Confidence 9999999999998765 455666554322100 0 000000000000
Q ss_pred ccceeeeeeccceeEEEeecccceecccccccccccchhhhhhcccccEEEEEecC-C-eeEeeeCC----CeEEEEe--
Q psy18231 333 NGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEARDSITSVHVSD-H-EILTASLD----CRIRRYD-- 404 (540)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~-~-~l~~~~~d----g~i~iwd-- 404 (540)
.......+.+++..+......+. . .....+.+|...+.+++|+| . ++++.... ..|.+||
T Consensus 219 -------~~~~~~~l~~~d~~~~~~~~~~~---~--~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~ 286 (719)
T 1z68_A 219 -------AKNPVVRIFIIDTTYPAYVGPQE---V--PVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFR 286 (719)
T ss_dssp -------SCCCEEEEEEEESSCHHHHCCEE---C--CCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEEC
T ss_pred -------CCCCeeEEEEEECCCCCccceeE---c--cCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEccc
Confidence 00112344455544332110000 0 00023557888999999999 4 34443222 3488999
Q ss_pred --CCCCceEEee----eC--CceE-----EEEEecCCcEEEe--ecCCC--eEEEEeccccchhhhhccCcCCcceEEEE
Q psy18231 405 --IRTGNLVTDY----VG--EPIV-----DACFTRDCQCILT--CSTDE--CLRLFDKATGELLEEYKGHKSGDFRIECC 467 (540)
Q Consensus 405 --~~~~~~~~~~----~~--~~i~-----~~~~sp~~~~l~~--~~~dg--~i~i~d~~~~~~~~~~~~~~~~v~~~~~~ 467 (540)
..+++....+ .+ ..+. .+.|+|||+.++. +..+| .|.+||+.+++ ...+..+...+..+ .
T Consensus 287 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~-~~~lt~~~~~v~~~--~ 363 (719)
T 1z68_A 287 EDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVEN-AIQITSGKWEAINI--F 363 (719)
T ss_dssp SSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTT-CEECSCSSSCEEEE--E
T ss_pred CCCCCCceEEEEecccccCCceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCc-eEecccCceEEEEE--E
Confidence 8877765444 22 3454 7899999996554 44444 57778887665 44555555445544 4
Q ss_pred ecCCCCeEEEeeCC-----CcEEEEEecC--Cc-ceeEEEe--cccceeeeEEEEcCCCcEEEee-c-C--CeeEEEEcc
Q psy18231 468 LDSKDSQIFCGSSD-----GKIYKWQLVD--SS-QISTLIH--SVGKAVVNSLCSHPTRKHIMSA-C-G--NNVKLWTAE 533 (540)
Q Consensus 468 ~s~~~~~l~s~s~d-----g~i~iwd~~~--~~-~~~~~~~--~~~~~~v~~l~~s~d~~~l~s~-~-d--~~i~iw~~~ 533 (540)
++ +++.|+..+.+ +.+++|.+.. +. ....+.. .+|...+..+.|+||+++++.. + + ..+.+|++.
T Consensus 364 ~~-d~~~i~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~s~dg~~l~~~~s~~~~p~~~l~d~~ 442 (719)
T 1z68_A 364 RV-TQDSLFYSSNEFEEYPGRRNIYRISIGSYPPSKKCVTCHLRKERCQYYTASFSDYAKYYALVCYGPGIPISTLHDGR 442 (719)
T ss_dssp EE-CSSEEEEEESCGGGCTTCBEEEEEECSSSSCCEEESSTTTTTTTBCBEEEEECGGGSSEEEEECCBSSCEEEEECSS
T ss_pred EE-eCCEEEEEEecCCCCCceEEEEEEeCCCCCCCceeccCccCCCCCceEEEEECCCCCEEEEEcCCCCCCeEEEEECC
Confidence 55 77777666654 8899998764 32 1233320 1256678899999999887743 3 3 478888876
Q ss_pred cc
Q psy18231 534 ED 535 (540)
Q Consensus 534 ~~ 535 (540)
++
T Consensus 443 ~g 444 (719)
T 1z68_A 443 TD 444 (719)
T ss_dssp SC
T ss_pred CC
Confidence 54
|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
Probab=99.89 E-value=1.6e-20 Score=179.41 Aligned_cols=279 Identities=11% Similarity=0.157 Sum_probs=182.7
Q ss_pred CCCCEEEEee----CCCcEEEEcC--CCCeeEEEeecCCcceeEEEEeeCCCeEEEeeCC----CeEEEEEcCC--Cce-
Q psy18231 174 VDGSYCLTCG----SDKKIKLWNP--YRNLLLKTYGGHAHEVNDATAACDSSQIASGASD----KSVILWEVTT--GQP- 240 (540)
Q Consensus 174 pdg~~lat~~----~dg~i~iwd~--~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~d----g~i~iwd~~~--~~~- 240 (540)
+...++++|+ .++.|.+|++ .+++.......+......++|+||+++|++++.+ +.|.+|++.. ++.
T Consensus 11 ~~~~~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~~~~~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~ 90 (361)
T 3scy_A 11 DSELTMLVGTYTSGNSKGIYTFRFNEETGESLPLSDAEVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLH 90 (361)
T ss_dssp GGEEEEEEEECCSSSCCEEEEEEEETTTCCEEEEEEEECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEE
T ss_pred CCceEEEEEeccCCCCCCEEEEEEeCCCCCEEEeecccCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEE
Confidence 3444566664 3568999865 4555433222267788889999999999999886 7999999876 432
Q ss_pred -eEeccccCCceeEEEECCCCCEEEEec-CCCcEEEEEecCCCCCCcchhhhhHhhhhcCCceeEEEEeecccccccccC
Q psy18231 241 -VRRWREHASKVTCVKFNEDSSVVISGS-QDNTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHLSNG 318 (540)
Q Consensus 241 -~~~~~~h~~~v~~~~~~~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (540)
+.....+......+++ ++++|++++ .++.|.+|++.......... .
T Consensus 91 ~~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~---------------~--------------- 138 (361)
T 3scy_A 91 LLNTQKTMGADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPAS---------------D--------------- 138 (361)
T ss_dssp EEEEEECSSSCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCS---------------E---------------
T ss_pred EeeEeccCCCCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccc---------------e---------------
Confidence 3333345567778888 777777665 57899999997543100000 0
Q ss_pred ceeeEEEeeeecccccceeeeeeccceeEEEeecccceecccccccccccchhhhhhcccccEEEEEecC--CeeEee-e
Q psy18231 319 LLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEARDSITSVHVSD--HEILTA-S 395 (540)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~--~~l~~~-~ 395 (540)
.....+. .......+...+.+++|+| ++++++ .
T Consensus 139 ------------------------------~~~~~g~--------------~~~~~~~~~~~~~~~~~spdg~~l~~~~~ 174 (361)
T 3scy_A 139 ------------------------------VIEFKGS--------------GPDKERQTMPHLHCVRITPDGKYLLADDL 174 (361)
T ss_dssp ------------------------------EEECCCC--------------CSCTTTCSSCCEEEEEECTTSSEEEEEET
T ss_pred ------------------------------eEEccCC--------------CCCccccCCCcceEEEECCCCCEEEEEeC
Confidence 0000000 0001112334578899998 545554 4
Q ss_pred CCCeEEEEeCCCCc-------e-------EEeee-CCceEEEEEecCCcEEEeec-CCCeEEEEeccccch--hhhhc--
Q psy18231 396 LDCRIRRYDIRTGN-------L-------VTDYV-GEPIVDACFTRDCQCILTCS-TDECLRLFDKATGEL--LEEYK-- 455 (540)
Q Consensus 396 ~dg~i~iwd~~~~~-------~-------~~~~~-~~~i~~~~~sp~~~~l~~~~-~dg~i~i~d~~~~~~--~~~~~-- 455 (540)
.++.|.+|++.... . ..... +.....++|+|+|+++++++ .++.|.+||+.+++. +..+.
T Consensus 175 ~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~ 254 (361)
T 3scy_A 175 GTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAAD 254 (361)
T ss_dssp TTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESC
T ss_pred CCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecC
Confidence 58999999887543 1 11111 35688999999999887776 689999999987643 22222
Q ss_pred -cCcCCcceEEEEecCCCCeEEEeeC--CCcEEEEEec--CCc--ceeEEEecccceeeeEEEEcCCCcEEEeec--CCe
Q psy18231 456 -GHKSGDFRIECCLDSKDSQIFCGSS--DGKIYKWQLV--DSS--QISTLIHSVGKAVVNSLCSHPTRKHIMSAC--GNN 526 (540)
Q Consensus 456 -~~~~~v~~~~~~~s~~~~~l~s~s~--dg~i~iwd~~--~~~--~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~--d~~ 526 (540)
.+......+ +|+|||++|+++.. ++.|.+|++. +++ .+..+. . ...+.+++|+|||++|++++ ++.
T Consensus 255 ~~~~~~~~~i--~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~--~-g~~~~~~~~spdg~~l~~~~~~~~~ 329 (361)
T 3scy_A 255 TVNAQGSGDI--HLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQL--T-GIHPRNFIITPNGKYLLVACRDTNV 329 (361)
T ss_dssp SSCCCCEEEE--EECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEE--C-SSCCCEEEECTTSCEEEEEETTTTE
T ss_pred CCCCCCcccE--EECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEec--C-CCCCceEEECCCCCEEEEEECCCCC
Confidence 222223344 89999999877665 4899999996 444 333343 3 45688999999999888876 789
Q ss_pred eEEEEcc
Q psy18231 527 VKLWTAE 533 (540)
Q Consensus 527 i~iw~~~ 533 (540)
|.+|+++
T Consensus 330 v~v~~~d 336 (361)
T 3scy_A 330 IQIFERD 336 (361)
T ss_dssp EEEEEEC
T ss_pred EEEEEEE
Confidence 9998765
|
| >3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=99.89 E-value=5.4e-22 Score=191.64 Aligned_cols=270 Identities=13% Similarity=0.078 Sum_probs=184.8
Q ss_pred EEeCCCCCEEEEeeC-CC--cEEEEcCCCCeeEEEeecCCcceeEEEEeeCCCeEEEeeCCCeEEEEEcCCCceeEeccc
Q psy18231 170 TRFPVDGSYCLTCGS-DK--KIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPVRRWRE 246 (540)
Q Consensus 170 v~~spdg~~lat~~~-dg--~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~ 246 (540)
.+|||||++|+.++. ++ .|.+||+.+++......++...+..+.|+||++.|+.++.++.|.+||+.+++....+..
T Consensus 41 ~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~~~~ 120 (388)
T 3pe7_A 41 KCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLEENVVYQV 120 (388)
T ss_dssp CCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEEC
T ss_pred ccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCCCCEEEEEeCCCeEEEEECCCCcceeeeec
Confidence 789999999998876 66 488889999888777777777776789999999999999999999999999987776666
Q ss_pred cCCceeEEE--ECCCCCEEEEec----------------------CCCcEEEEEecCCCCCCcchhhhhHhhhhcCCcee
Q psy18231 247 HASKVTCVK--FNEDSSVVISGS----------------------QDNTVMMWDVKSRSHHPIQVRCLNEALKEARDSIT 302 (540)
Q Consensus 247 h~~~v~~~~--~~~~~~~l~s~~----------------------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (540)
+...+.... +++++.+++... .+..|.+||+.+++.
T Consensus 121 ~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~-------------------- 180 (388)
T 3pe7_A 121 PAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGES-------------------- 180 (388)
T ss_dssp CTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCE--------------------
T ss_pred hhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCce--------------------
Confidence 666554444 488998877421 234455555554431
Q ss_pred EEEEeecccccccccCceeeEEEeeeecccccceeeeeeccceeEEEeecccceecccccccccccchhhhhhcccccEE
Q psy18231 303 SVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEARDSIT 382 (540)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 382 (540)
..+..+...+.
T Consensus 181 ---------------------------------------------------------------------~~l~~~~~~~~ 191 (388)
T 3pe7_A 181 ---------------------------------------------------------------------TVILQENQWLG 191 (388)
T ss_dssp ---------------------------------------------------------------------EEEEEESSCEE
T ss_pred ---------------------------------------------------------------------EEeecCCcccc
Confidence 01223344567
Q ss_pred EEEecC---CeeEeeeC------CCeEEEEeCCCCceEEeeeCC---ceEEEEEecCCcEEEeecC-C----CeEEEEec
Q psy18231 383 SVHVSD---HEILTASL------DCRIRRYDIRTGNLVTDYVGE---PIVDACFTRDCQCILTCST-D----ECLRLFDK 445 (540)
Q Consensus 383 ~l~~~~---~~l~~~~~------dg~i~iwd~~~~~~~~~~~~~---~i~~~~~sp~~~~l~~~~~-d----g~i~i~d~ 445 (540)
.+.|+| +.++..+. ...|.++|...++........ .+...+|+|||+.|+..+. + ..|++||+
T Consensus 192 ~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~ 271 (388)
T 3pe7_A 192 HPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMRKVKTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADP 271 (388)
T ss_dssp EEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCEESCCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECT
T ss_pred ccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceEEeeeCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEec
Confidence 778877 44555544 337888888766543333322 4778899999998765443 2 24999999
Q ss_pred cccchh--hhhccCcC---CcceEEEEecCCCCeEEEe---------eCCCcEEEEEecCCcceeEEEecccce------
Q psy18231 446 ATGELL--EEYKGHKS---GDFRIECCLDSKDSQIFCG---------SSDGKIYKWQLVDSSQISTLIHSVGKA------ 505 (540)
Q Consensus 446 ~~~~~~--~~~~~~~~---~v~~~~~~~s~~~~~l~s~---------s~dg~i~iwd~~~~~~~~~~~~~~~~~------ 505 (540)
.+++.. ..+.++.. ..... +|+|||+.|+.. ..+..|++||+.+++. ..+. .+..
T Consensus 272 ~~g~~~~l~~~~~~~~~~~~~~~~--~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~--~~~~~~~~~~ 346 (388)
T 3pe7_A 272 ETLENRQLTSMPACSHLMSNYDGS--LMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQ-HRVA--RHDTSWKVFE 346 (388)
T ss_dssp TTCCEEEEEEECCEEEEEECTTSS--EEEEEECCC------------CCCCEEEEEETTTTEE-EEEE--ECCCCCCCBT
T ss_pred CCCceEEEEcCCCceeeeecCCCC--eEccCCCcceeEeeeccccccCCCCEEEEEeccCCce-EEec--cccCcccccc
Confidence 988642 22322100 01112 589999988754 4567899999887765 4444 3444
Q ss_pred -----eeeEEEEcCCCcEEEeec--CCeeEEEEcc
Q psy18231 506 -----VVNSLCSHPTRKHIMSAC--GNNVKLWTAE 533 (540)
Q Consensus 506 -----~v~~l~~s~d~~~l~s~~--d~~i~iw~~~ 533 (540)
.+.+++|+|||+.|+.++ ++...||.++
T Consensus 347 ~~~~~~~~~~~~spDg~~l~~~s~~~g~~~l~~~~ 381 (388)
T 3pe7_A 347 GDRQVTHPHPSFTPDDKQILFTSDVHGKPALYLAT 381 (388)
T ss_dssp TBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEE
T ss_pred cccccCCCCccCCCCCCEEEEEecCCCceeEEEEE
Confidence 478899999999888665 7777777654
|
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A | Back alignment and structure |
|---|
Probab=99.89 E-value=3.5e-22 Score=203.52 Aligned_cols=231 Identities=12% Similarity=0.036 Sum_probs=173.4
Q ss_pred CcceeEEEEeeCCCeEEEeeC-CCeEEEEEcCCCceeEeccccC-CceeEEEECCCCCEEEEecC---CCcEEEEEecC-
Q psy18231 206 AHEVNDATAACDSSQIASGAS-DKSVILWEVTTGQPVRRWREHA-SKVTCVKFNEDSSVVISGSQ---DNTVMMWDVKS- 279 (540)
Q Consensus 206 ~~~v~~l~~sp~~~~l~s~s~-dg~i~iwd~~~~~~~~~~~~h~-~~v~~~~~~~~~~~l~s~~~---dg~i~iwd~~~- 279 (540)
..+|++++|+|||++||+++. ||+++||++..++..+ +..|. ..+..++|+|| +++++++. +....+|.+..
T Consensus 21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~~-lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~ 98 (582)
T 3o4h_A 21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETVK-LNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNTS 98 (582)
T ss_dssp HSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEEE-CCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEETT
T ss_pred ccchheeecCCCCCeEEEEEccCCceeEEEEcCCCcEe-eecccccccccccCCCC-eEEEEeccCCCCcceEEEEEecc
Confidence 567999999999999999887 9999999996666544 44454 68999999999 77777664 45667776654
Q ss_pred -CCCCCcchhhhhHhhhhcCCceeEEEEeecccccccccCceeeEEEeeeecccccceeeeeeccceeEEEeecccceec
Q psy18231 280 -RSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQI 358 (540)
Q Consensus 280 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (540)
..... .
T Consensus 99 ~~g~~~-~------------------------------------------------------------------------ 105 (582)
T 3o4h_A 99 RPGEEQ-R------------------------------------------------------------------------ 105 (582)
T ss_dssp STTCCE-E------------------------------------------------------------------------
T ss_pred CCCccc-c------------------------------------------------------------------------
Confidence 21100 0
Q ss_pred ccccccccccchhhhhhcccccEEEEEecC-CeeEeeeCCCeEEEEeCCCCceEEeeeCCceEEEEEecCCcEEEeecCC
Q psy18231 359 GDVTPISIHNSCFQALKEARDSITSVHVSD-HEILTASLDCRIRRYDIRTGNLVTDYVGEPIVDACFTRDCQCILTCSTD 437 (540)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d 437 (540)
....+...+.++++++ ..+++.+.++.+.+||+.+++......... .+++|||||++|++++.+
T Consensus 106 --------------l~~~~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~~-~~~~~spDG~~la~~~~~ 170 (582)
T 3o4h_A 106 --------------LEAVKPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLPG-FGFVSDIRGDLIAGLGFF 170 (582)
T ss_dssp --------------CTTSCSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEESS-CEEEEEEETTEEEEEEEE
T ss_pred --------------ccCCCCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecCCC-ceEEECCCCCEEEEEEEc
Confidence 0011112244555555 444555555556699999887665554444 899999999999988877
Q ss_pred ----CeEEEEeccccchhhhhccCcCCcceEEEEecCCCCeEEEeeCCC--cEEEEEecCCcceeEEEecccceeeeEEE
Q psy18231 438 ----ECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDG--KIYKWQLVDSSQISTLIHSVGKAVVNSLC 511 (540)
Q Consensus 438 ----g~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~s~~~~~l~s~s~dg--~i~iwd~~~~~~~~~~~~~~~~~~v~~l~ 511 (540)
+.|++||+.+++.. .+..|...+..+ +|||||++|++++.++ .|++||+.+++.. .+. .|...+..++
T Consensus 171 ~~~~~~i~~~d~~~g~~~-~l~~~~~~~~~~--~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~--~~~~~~~~~~ 244 (582)
T 3o4h_A 171 GGGRVSLFTSNLSSGGLR-VFDSGEGSFSSA--SISPGMKVTAGLETAREARLVTVDPRDGSVE-DLE--LPSKDFSSYR 244 (582)
T ss_dssp ETTEEEEEEEETTTCCCE-EECCSSCEEEEE--EECTTSCEEEEEECSSCEEEEEECTTTCCEE-ECC--CSCSHHHHHC
T ss_pred CCCCeEEEEEcCCCCCce-EeecCCCccccc--eECCCCCEEEEccCCCeeEEEEEcCCCCcEE-Ecc--CCCcChhhhh
Confidence 78999999888754 566777666555 8999999999888888 8999999988877 554 6777777777
Q ss_pred --------EcCCCcEEEeec-CCeeEEEEc
Q psy18231 512 --------SHPTRKHIMSAC-GNNVKLWTA 532 (540)
Q Consensus 512 --------~s~d~~~l~s~~-d~~i~iw~~ 532 (540)
|+|||.++++++ |+++++|++
T Consensus 245 ~~~~~~~~~spdg~~~~~~~~~g~~~l~~~ 274 (582)
T 3o4h_A 245 PTAITWLGYLPDGRLAVVARREGRSAVFID 274 (582)
T ss_dssp CSEEEEEEECTTSCEEEEEEETTEEEEEET
T ss_pred hccccceeEcCCCcEEEEEEcCCcEEEEEE
Confidence 999998888888 999999998
|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
Probab=99.88 E-value=6.4e-20 Score=175.11 Aligned_cols=285 Identities=8% Similarity=0.057 Sum_probs=185.1
Q ss_pred cccceeeeecccc--cce---eeeeecCeEEEEeCCCCCEEEEeeCC----CcEEEEcCCC--Ce--eEEEeecCCccee
Q psy18231 144 PKEWSIRVYRPLT--VNR---ELFVLSGLMHTRFPVDGSYCLTCGSD----KKIKLWNPYR--NL--LLKTYGGHAHEVN 210 (540)
Q Consensus 144 ~~~~~i~~~~~~~--~~~---~~~h~~~v~~v~~spdg~~lat~~~d----g~i~iwd~~~--~~--~~~~~~~h~~~v~ 210 (540)
+.+..|.+|.... ... ...+...+..++|+|||++|++++.+ +.|.+|++.. ++ .+.....+.....
T Consensus 24 ~~~~~i~~~~~d~~~g~~~~~~~~~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~ 103 (361)
T 3scy_A 24 GNSKGIYTFRFNEETGESLPLSDAEVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPC 103 (361)
T ss_dssp SSCCEEEEEEEETTTCCEEEEEEEECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEE
T ss_pred CCCCCEEEEEEeCCCCCEEEeecccCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcE
Confidence 3455677776532 211 11267788899999999999998875 7999998765 43 3334444556677
Q ss_pred EEEEeeCCCeEEEee-CCCeEEEEEcCCCceeEecc--------------ccCCceeEEEECCCCCEEEEec-CCCcEEE
Q psy18231 211 DATAACDSSQIASGA-SDKSVILWEVTTGQPVRRWR--------------EHASKVTCVKFNEDSSVVISGS-QDNTVMM 274 (540)
Q Consensus 211 ~l~~sp~~~~l~s~s-~dg~i~iwd~~~~~~~~~~~--------------~h~~~v~~~~~~~~~~~l~s~~-~dg~i~i 274 (540)
.+++ ++++|++++ .++.|.+|++.....+..+. .+...+.+++|+|+|+++++++ .++.|.+
T Consensus 104 ~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v 181 (361)
T 3scy_A 104 YLTT--NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHK 181 (361)
T ss_dssp EEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEE
T ss_pred EEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEE
Confidence 7777 788777766 57899999997543332211 1233468899999999666554 5789999
Q ss_pred EEecCCCC----CCcchhhhhHhhhhcCCceeEEEEeecccccccccCceeeEEEeeeecccccceeeeeeccceeEEEe
Q psy18231 275 WDVKSRSH----HPIQVRCLNEALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLL 350 (540)
Q Consensus 275 wd~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (540)
|++..... ..+.. . +.
T Consensus 182 ~~~~~~~~~~~~~~l~~----------------~----------------------------------------~~---- 201 (361)
T 3scy_A 182 FNINPNANADNKEKFLT----------------K----------------------------------------GT---- 201 (361)
T ss_dssp EEECTTCCTTTCCCCEE----------------E----------------------------------------EE----
T ss_pred EEEcCCCCcccccceee----------------c----------------------------------------cc----
Confidence 99876431 00000 0 00
Q ss_pred ecccceecccccccccccchhhhhhcccccEEEEEecC--CeeEeee-CCCeEEEEeCCCCce--EEeeeC-----CceE
Q psy18231 351 DFLGSTQIGDVTPISIHNSCFQALKEARDSITSVHVSD--HEILTAS-LDCRIRRYDIRTGNL--VTDYVG-----EPIV 420 (540)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~--~~l~~~~-~dg~i~iwd~~~~~~--~~~~~~-----~~i~ 420 (540)
.......+...+..++|+| +++++++ .++.|.+||+.+++. +..+.. ....
T Consensus 202 -------------------~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~ 262 (361)
T 3scy_A 202 -------------------PEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSG 262 (361)
T ss_dssp -------------------EEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEE
T ss_pred -------------------ccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcc
Confidence 0000011234467899998 5566666 689999999987754 233322 3467
Q ss_pred EEEEecCCcEEEeecCC--CeEEEEecc--ccc--hhhhhccCcCCcceEEEEecCCCCeEEEee-CCCcEEEEEec--C
Q psy18231 421 DACFTRDCQCILTCSTD--ECLRLFDKA--TGE--LLEEYKGHKSGDFRIECCLDSKDSQIFCGS-SDGKIYKWQLV--D 491 (540)
Q Consensus 421 ~~~~sp~~~~l~~~~~d--g~i~i~d~~--~~~--~~~~~~~~~~~v~~~~~~~s~~~~~l~s~s-~dg~i~iwd~~--~ 491 (540)
.++|+|||++|+++..+ +.|.+|++. +++ .+..+.. ...+..+ +|+|||++|++++ .++.|.+|++. +
T Consensus 263 ~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~-g~~~~~~--~~spdg~~l~~~~~~~~~v~v~~~d~~~ 339 (361)
T 3scy_A 263 DIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLT-GIHPRNF--IITPNGKYLLVACRDTNVIQIFERDQAT 339 (361)
T ss_dssp EEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC-SSCCCEE--EECTTSCEEEEEETTTTEEEEEEECTTT
T ss_pred cEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC-CCCCceE--EECCCCCEEEEEECCCCCEEEEEEECCC
Confidence 99999999998776654 899999985 343 3333433 3344555 8999999988887 67899997654 5
Q ss_pred CcceeEEEecccceeeeEEEEc
Q psy18231 492 SSQISTLIHSVGKAVVNSLCSH 513 (540)
Q Consensus 492 ~~~~~~~~~~~~~~~v~~l~~s 513 (540)
++...... ..+...+.|+.|.
T Consensus 340 g~~~~~~~-~~~~~~p~~v~~~ 360 (361)
T 3scy_A 340 GLLTDIKK-DIKVDKPVCLKFV 360 (361)
T ss_dssp CCEEECSC-CEECSSEEEEEEE
T ss_pred CcEeecce-eeeCCCCeEEEEc
Confidence 55433221 1244568888886
|
| >2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A | Back alignment and structure |
|---|
Probab=99.87 E-value=4.1e-21 Score=186.91 Aligned_cols=206 Identities=11% Similarity=0.116 Sum_probs=157.2
Q ss_pred eeeeecccccceeeeeecCeEEEEeCCCCCEEEEeeCCCcEEEEcCCCC----------eeE------EEeecCCcceeE
Q psy18231 148 SIRVYRPLTVNRELFVLSGLMHTRFPVDGSYCLTCGSDKKIKLWNPYRN----------LLL------KTYGGHAHEVND 211 (540)
Q Consensus 148 ~i~~~~~~~~~~~~~h~~~v~~v~~spdg~~lat~~~dg~i~iwd~~~~----------~~~------~~~~~h~~~v~~ 211 (540)
.+++|+.... .....++.+++++++.++++++.++ +++|+.... ..+ ..+ .|...|.+
T Consensus 24 ~vri~~~~~~----~~~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~ 97 (434)
T 2oit_A 24 KVRIFDSPEE----LPKERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLV-PMKFPIHH 97 (434)
T ss_dssp EEECSCCCSS----CCCSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEE-CCSSCEEE
T ss_pred eEEecCCccc----cCCCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccc-cCCCcccE
Confidence 5677765321 1235689999999999999999887 888764211 011 112 35678999
Q ss_pred EEEeeCCCeEE----EeeCCCeEEEEEcCCC--------ce---eEeccccCCceeEEEECCC-CCEEEEecCCCcEEEE
Q psy18231 212 ATAACDSSQIA----SGASDKSVILWEVTTG--------QP---VRRWREHASKVTCVKFNED-SSVVISGSQDNTVMMW 275 (540)
Q Consensus 212 l~~sp~~~~l~----s~s~dg~i~iwd~~~~--------~~---~~~~~~h~~~v~~~~~~~~-~~~l~s~~~dg~i~iw 275 (540)
++|+|++++|+ +++.|++|+|||+.++ +. +..+.+|...|.+++|+|+ +++|++++.||+|++|
T Consensus 98 l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iw 177 (434)
T 2oit_A 98 LALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVL 177 (434)
T ss_dssp EEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEE
T ss_pred EEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEE
Confidence 99999999999 8899999999999765 22 4556789999999999997 7899999999999999
Q ss_pred EecCCCCCCcchhhhhHhhhhcCCceeEEEEeecccccccccCceeeEEEeeeecccccceeeeeeccceeEEEeecccc
Q psy18231 276 DVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGS 355 (540)
Q Consensus 276 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (540)
|++++.. .
T Consensus 178 D~~~~~~--~---------------------------------------------------------------------- 185 (434)
T 2oit_A 178 QVTETVK--V---------------------------------------------------------------------- 185 (434)
T ss_dssp EESSSEE--E----------------------------------------------------------------------
T ss_pred EcCCCcc--e----------------------------------------------------------------------
Confidence 9987631 0
Q ss_pred eecccccccccccchhhhhhcccccEEEEEecC--CeeEeeeCCCeEEEEeCCCCceEEeeeC---------CceEEEEE
Q psy18231 356 TQIGDVTPISIHNSCFQALKEARDSITSVHVSD--HEILTASLDCRIRRYDIRTGNLVTDYVG---------EPIVDACF 424 (540)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~---------~~i~~~~~ 424 (540)
....+|...|.+++|+| ++|++|+.||.|++||++ ++....+.. ..+.+++|
T Consensus 186 ----------------~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w 248 (434)
T 2oit_A 186 ----------------CATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLW 248 (434)
T ss_dssp ----------------EEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEE
T ss_pred ----------------eeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEE
Confidence 02235778899999998 899999999999999998 555444421 17899999
Q ss_pred ecCCcEEEeec-CCC------eEEEEecccc
Q psy18231 425 TRDCQCILTCS-TDE------CLRLFDKATG 448 (540)
Q Consensus 425 sp~~~~l~~~~-~dg------~i~i~d~~~~ 448 (540)
++++.++++.+ .|| .+++||+.+.
T Consensus 249 ~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~ 279 (434)
T 2oit_A 249 IGTYVFAIVYAAADGTLETSPDVVMALLPKK 279 (434)
T ss_dssp EETTEEEEEEEETTCCSSSCCEEEEEECCCT
T ss_pred ecCceEEEEEccCCCccCCCCceEEEEeccC
Confidence 99988876533 333 3899999765
|
| >2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A | Back alignment and structure |
|---|
Probab=99.87 E-value=4.1e-21 Score=186.90 Aligned_cols=262 Identities=8% Similarity=0.070 Sum_probs=175.9
Q ss_pred CcEEEEcCCCCeeEEEeecCCcceeEEEEeeCCCeEEEeeCCCeEEEEEcCCCc----------eeEe-----ccccCCc
Q psy18231 186 KKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQ----------PVRR-----WREHASK 250 (540)
Q Consensus 186 g~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~----------~~~~-----~~~h~~~ 250 (540)
+.+++|+.... .+...+..+++++++.++++++.|+ +++|+..... .+.. ...+...
T Consensus 23 ~~vri~~~~~~-------~~~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (434)
T 2oit_A 23 KKVRIFDSPEE-------LPKERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFP 94 (434)
T ss_dssp CEEECSCCCSS-------CCCSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSC
T ss_pred eeEEecCCccc-------cCCCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCc
Confidence 56888875321 1345688999999999999999988 8998764211 1111 1135678
Q ss_pred eeEEEECCCCCEEE----EecCCCcEEEEEecCCCCCCcchhhhhHhhhhcCCceeEEEEeecccccccccCceeeEEEe
Q psy18231 251 VTCVKFNEDSSVVI----SGSQDNTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFA 326 (540)
Q Consensus 251 v~~~~~~~~~~~l~----s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (540)
|.+++|+|++++|+ +++.|+.|++||+.+........ ..
T Consensus 95 v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~----------~~--------------------------- 137 (434)
T 2oit_A 95 IHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQ----------KR--------------------------- 137 (434)
T ss_dssp EEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSS----------CC---------------------------
T ss_pred ccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCC----------cc---------------------------
Confidence 99999999999999 88999999999987641000000 00
Q ss_pred eeecccccceeeeeeccceeEEEeecccceecccccccccccchhhhhhcccccEEEEEecC---CeeEeeeCCCeEEEE
Q psy18231 327 FRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEARDSITSVHVSD---HEILTASLDCRIRRY 403 (540)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~---~~l~~~~~dg~i~iw 403 (540)
.......+.+|...|.+++|+| .++++++.||+|++|
T Consensus 138 ----------------------------------------~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iw 177 (434)
T 2oit_A 138 ----------------------------------------PFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVL 177 (434)
T ss_dssp ----------------------------------------CSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEE
T ss_pred ----------------------------------------eeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEE
Confidence 0000124567899999999998 579999999999999
Q ss_pred eCCCCceEEeeeC--CceEEEEEecCCcEEEeecCCCeEEEEeccccchhhhhccCcC-----CcceEEEEecCCCCeEE
Q psy18231 404 DIRTGNLVTDYVG--EPIVDACFTRDCQCILTCSTDECLRLFDKATGELLEEYKGHKS-----GDFRIECCLDSKDSQIF 476 (540)
Q Consensus 404 d~~~~~~~~~~~~--~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~-----~v~~~~~~~s~~~~~l~ 476 (540)
|++++..+....+ ..+.+++|+|+|++|++|+.||.|++||.+ ++....+..|.. ......++|++++.+++
T Consensus 178 D~~~~~~~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~ 256 (434)
T 2oit_A 178 QVTETVKVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAI 256 (434)
T ss_dssp EESSSEEEEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEE
T ss_pred EcCCCcceeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCceEEE
Confidence 9999876655543 579999999999999999999999999998 544444433321 12344458899888765
Q ss_pred Ee-eCCC------cEEEEEecCCcc--eeEEE---ec-----ccceeeeEEEEcCCCcEEEeec--CCeeEEEEcc
Q psy18231 477 CG-SSDG------KIYKWQLVDSSQ--ISTLI---HS-----VGKAVVNSLCSHPTRKHIMSAC--GNNVKLWTAE 533 (540)
Q Consensus 477 s~-s~dg------~i~iwd~~~~~~--~~~~~---~~-----~~~~~v~~l~~s~d~~~l~s~~--d~~i~iw~~~ 533 (540)
+. +.|| .+++|++...+. ...+. .. ....+-..+.+-++.+++++++ .+.|.+....
T Consensus 257 ~~~~~dg~~~~~~~v~i~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~dw~l~~v~s~~s~dv~vl~~~ 332 (434)
T 2oit_A 257 VYAAADGTLETSPDVVMALLPKKEEKHPEIFVNFMEPCYGSCTERQHHYYLSYIEEWDLVLAASAASTEVSILARQ 332 (434)
T ss_dssp EEEETTCCSSSCCEEEEEECCCTTTCCCCEEEECCCSSCCCCSSSCCCEEEEEEGGGTEEEEEETTCSBCEEEEEC
T ss_pred EEccCCCccCCCCceEEEEeccCCCCCCcceEecccCCCCCCCCcCcceeeehhccCCEEEEecCCCCceeEEEec
Confidence 43 3443 389999976531 11111 00 1122222344447777776665 6666666643
|
| >1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* | Back alignment and structure |
|---|
Probab=99.86 E-value=3.6e-20 Score=175.97 Aligned_cols=283 Identities=8% Similarity=0.037 Sum_probs=183.5
Q ss_pred hhhhcccccceeeeeccccccee--eeeec--CeEEEEeCCCCCEEE-EeeCCCcEEEEcCCCCeeEEEeecCC------
Q psy18231 138 RILYELPKEWSIRVYRPLTVNRE--LFVLS--GLMHTRFPVDGSYCL-TCGSDKKIKLWNPYRNLLLKTYGGHA------ 206 (540)
Q Consensus 138 ~~~~~~~~~~~i~~~~~~~~~~~--~~h~~--~v~~v~~spdg~~la-t~~~dg~i~iwd~~~~~~~~~~~~h~------ 206 (540)
.++.....+..|.+|+..+.... ..... .+..++|+|||++++ ++..++.|.+||+.+++.+..+..+.
T Consensus 12 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~~~~~~~~ 91 (349)
T 1jmx_B 12 EYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVG 91 (349)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEEE
T ss_pred EEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEccccccccc
Confidence 34455567788999998775432 22233 688999999998765 45568999999999999887776332
Q ss_pred cceeEEEEeeCCCeEEEeeCC------------CeEEEEEcCCCcee---EeccccCCceeEEEECCCCCEEEEecCCCc
Q psy18231 207 HEVNDATAACDSSQIASGASD------------KSVILWEVTTGQPV---RRWREHASKVTCVKFNEDSSVVISGSQDNT 271 (540)
Q Consensus 207 ~~v~~l~~sp~~~~l~s~s~d------------g~i~iwd~~~~~~~---~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~ 271 (540)
..+.+++|+|+|++|++++.+ +.|.+||+.+++.. ..+. +...+.+++|+|+++ +++++. .
T Consensus 92 ~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~s~dg~-l~~~~~--~ 167 (349)
T 1jmx_B 92 RSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFP-MPRQVYLMRAADDGS-LYVAGP--D 167 (349)
T ss_dssp ECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEE-CCSSCCCEEECTTSC-EEEESS--S
T ss_pred ccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeecc-CCCcccceeECCCCc-EEEccC--c
Confidence 337899999999999998865 89999999885433 3333 344688999999999 555543 4
Q ss_pred EEEEEecCCCCCCcchhhhhHhhhhcCCceeEEEEeecccccccccCceeeEEEeeeecccccceeeeeeccceeEEEee
Q psy18231 272 VMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLD 351 (540)
Q Consensus 272 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (540)
|.+||+.+++..... ........ .. .. ...+.++.
T Consensus 168 i~~~d~~~~~~~~~~---------------------~~~~~~~~------------------~~-----~~-~~~~~~~~ 202 (349)
T 1jmx_B 168 IYKMDVKTGKYTVAL---------------------PLRNWNRK------------------GY-----SA-PDVLYFWP 202 (349)
T ss_dssp EEEECTTTCCEEEEE---------------------CSTTCCCT------------------TB-----CC-CBCCCCCC
T ss_pred EEEEeCCCCceeccc---------------------cccccCCc------------------cc-----cC-ccceeeec
Confidence 999999877621100 00000000 00 00 00000000
Q ss_pred cccceecccccccccccchhhhhhcccccEEEEEecC-------------CeeEeeeCCCeEEEEeCCCCceEEeeeCCc
Q psy18231 352 FLGSTQIGDVTPISIHNSCFQALKEARDSITSVHVSD-------------HEILTASLDCRIRRYDIRTGNLVTDYVGEP 418 (540)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~-------------~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 418 (540)
.. ...........+++++ .++.....++.+++|++.. .+..
T Consensus 203 ~~-------------------~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~ 256 (349)
T 1jmx_B 203 HQ-------------------SPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFAD-------LTEL 256 (349)
T ss_dssp CC-------------------CTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEE-------CSSC
T ss_pred CC-------------------CcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEeccccc-------CCCc
Confidence 00 0000000112233332 1111223344444444421 3457
Q ss_pred eEEEEEec-CCcEEEeecCCCeEEEEeccccchhhhhccCcCCcceEEEEecCCCCeEEEeeCCCcEEEEEecCCcceeE
Q psy18231 419 IVDACFTR-DCQCILTCSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQIST 497 (540)
Q Consensus 419 i~~~~~sp-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~ 497 (540)
+..++|+| ++++++++ ++.|.+||+.+++.+..+.... .+..+ +|+|+|++|++++.++.|++||+.+++.+..
T Consensus 257 ~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~~-~~~~~--~~s~dg~~l~~~~~~~~v~v~d~~~~~~~~~ 331 (349)
T 1jmx_B 257 YFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAANLDH-TYYCV--AFDKKGDKLYLGGTFNDLAVFNPDTLEKVKN 331 (349)
T ss_dssp EEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEEEECSS-CCCEE--EECSSSSCEEEESBSSEEEEEETTTTEEEEE
T ss_pred ceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEEEcCCC-Cccce--EECCCCCEEEEecCCCeEEEEeccccceeee
Confidence 88999999 99999988 8899999999998877765433 34555 8999999999898999999999999998888
Q ss_pred EEe
Q psy18231 498 LIH 500 (540)
Q Consensus 498 ~~~ 500 (540)
+..
T Consensus 332 ~~~ 334 (349)
T 1jmx_B 332 IKL 334 (349)
T ss_dssp EEC
T ss_pred eec
Confidence 873
|
| >1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1 | Back alignment and structure |
|---|
Probab=99.86 E-value=1e-19 Score=173.68 Aligned_cols=272 Identities=9% Similarity=0.030 Sum_probs=179.9
Q ss_pred EEEEeeCC--CcEEEEcC--CCCeeEE--Eee-cCCcceeEEEEeeCCCeEEEeeCCCeEEEEEcC-CCceeEecccc-C
Q psy18231 178 YCLTCGSD--KKIKLWNP--YRNLLLK--TYG-GHAHEVNDATAACDSSQIASGASDKSVILWEVT-TGQPVRRWREH-A 248 (540)
Q Consensus 178 ~lat~~~d--g~i~iwd~--~~~~~~~--~~~-~h~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~-~~~~~~~~~~h-~ 248 (540)
+|++|+.. +.|.+|++ .+++... ... .....+..++|+|++++|++++.+ .|.+|++. +++........ .
T Consensus 4 ~~~vg~~~~~~~i~~~~~d~~~g~l~~~~~~~~~~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~ 82 (365)
T 1jof_A 4 HLMIGTWTPPGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIG 82 (365)
T ss_dssp EEEEEESSSSCEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECC
T ss_pred EEEEEEccCCCcEEEEEEECCCCCEEEeeEEccCCCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecC
Confidence 45566553 56777654 5665432 221 234578899999999999999888 99999997 77665433211 1
Q ss_pred CceeEEEECCCCCE--EEEec-------------CCCcEEEEEecC-CCCCCcchhhhhHhhhhcCCceeEEEEeecccc
Q psy18231 249 SKVTCVKFNEDSSV--VISGS-------------QDNTVMMWDVKS-RSHHPIQVRCLNEALKEARDSITSVHSLVKSTK 312 (540)
Q Consensus 249 ~~v~~~~~~~~~~~--l~s~~-------------~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (540)
+.+..++|+|+|++ +++++ .+|++.+|++.. ++.....
T Consensus 83 g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~-------------------------- 136 (365)
T 1jof_A 83 GHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNV-------------------------- 136 (365)
T ss_dssp SSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEE--------------------------
T ss_pred CCCccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceE--------------------------
Confidence 33566899999984 55553 688999999874 3210000
Q ss_pred cccccCceeeEEEeeeecccccceeeeeeccceeEEEeecccceecccccccccccchhhhh-hcccccEEEEEecC--C
Q psy18231 313 NHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQAL-KEARDSITSVHVSD--H 389 (540)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~l~~~~--~ 389 (540)
..+ ..+...+.+++|+| +
T Consensus 137 -----------------------------------------------------------~~~~~~~~~~~~~~~~spdG~ 157 (365)
T 1jof_A 137 -----------------------------------------------------------QNYEYQENTGIHGMVFDPTET 157 (365)
T ss_dssp -----------------------------------------------------------EEEECCTTCCEEEEEECTTSS
T ss_pred -----------------------------------------------------------eeEEeCCCCcceEEEECCCCC
Confidence 000 01345678899998 5
Q ss_pred eeEeee-CCCeEEEEeCC-CCceE--Eeee----CCceEEEEEecCCcEEEeecC-CCeEEEEecc--ccchh------h
Q psy18231 390 EILTAS-LDCRIRRYDIR-TGNLV--TDYV----GEPIVDACFTRDCQCILTCST-DECLRLFDKA--TGELL------E 452 (540)
Q Consensus 390 ~l~~~~-~dg~i~iwd~~-~~~~~--~~~~----~~~i~~~~~sp~~~~l~~~~~-dg~i~i~d~~--~~~~~------~ 452 (540)
+++++. .++.|++||++ +++.. ..+. +..+..++|+|||+++++++. ++.|.+|++. +++.. .
T Consensus 158 ~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~ 237 (365)
T 1jof_A 158 YLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFP 237 (365)
T ss_dssp EEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEE
T ss_pred EEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEE
Confidence 666655 46899999998 67643 3332 456899999999999887765 7899999765 45432 1
Q ss_pred hhcc----CcC----CcceEEEE-ecCCCCeEEEeeCCC------cEEEEEec-CCcceeEEE-ecccceeeeEEEEcC-
Q psy18231 453 EYKG----HKS----GDFRIECC-LDSKDSQIFCGSSDG------KIYKWQLV-DSSQISTLI-HSVGKAVVNSLCSHP- 514 (540)
Q Consensus 453 ~~~~----~~~----~v~~~~~~-~s~~~~~l~s~s~dg------~i~iwd~~-~~~~~~~~~-~~~~~~~v~~l~~s~- 514 (540)
.+.. |.. ......++ |+|||++|++++.+. .|.+|++. +++...... ...+...+..++|+|
T Consensus 238 ~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~ 317 (365)
T 1jof_A 238 LIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPC 317 (365)
T ss_dssp SSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEEC
T ss_pred cCCCCcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCC
Confidence 2221 121 00223348 999999988776432 89999996 565443211 113455678899999
Q ss_pred --CCcEEEeec--CCeeEEEEcccc
Q psy18231 515 --TRKHIMSAC--GNNVKLWTAEED 535 (540)
Q Consensus 515 --d~~~l~s~~--d~~i~iw~~~~~ 535 (540)
||++|++++ ++.|++|+++.+
T Consensus 318 ~~dg~~l~v~~~~~~~v~v~~~~~~ 342 (365)
T 1jof_A 318 PWSDEWMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp TTCTTEEEEECSSSCEEEEEEEETT
T ss_pred CcCCCEEEEEEcCCCeEEEEEEchh
Confidence 899999987 489999998654
|
| >1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1 | Back alignment and structure |
|---|
Probab=99.85 E-value=9.6e-20 Score=173.93 Aligned_cols=241 Identities=12% Similarity=0.115 Sum_probs=168.0
Q ss_pred cCeEEEEeCCCCCEEEEeeCCCcEEEEcCC-CCeeEEEeecC-CcceeEEEEeeCCCe--EEEee-------------CC
Q psy18231 165 SGLMHTRFPVDGSYCLTCGSDKKIKLWNPY-RNLLLKTYGGH-AHEVNDATAACDSSQ--IASGA-------------SD 227 (540)
Q Consensus 165 ~~v~~v~~spdg~~lat~~~dg~i~iwd~~-~~~~~~~~~~h-~~~v~~l~~sp~~~~--l~s~s-------------~d 227 (540)
..+..++|+|||++|++++.+ .|.+|++. +++........ .+....++|+|||++ +++++ .+
T Consensus 40 ~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~ 118 (365)
T 1jof_A 40 EPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFA 118 (365)
T ss_dssp CCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSC
T ss_pred CCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecCCCCccEEECCCCCEEEEEEecCCcceeccceeecCC
Confidence 368899999999999998887 99999987 77765433211 133566899999994 55553 68
Q ss_pred CeEEEEEcC-CCceeEecc----ccCCceeEEEECCCCCEEEEecC-CCcEEEEEec-CCCCCCcchhhhhHhhhhcCCc
Q psy18231 228 KSVILWEVT-TGQPVRRWR----EHASKVTCVKFNEDSSVVISGSQ-DNTVMMWDVK-SRSHHPIQVRCLNEALKEARDS 300 (540)
Q Consensus 228 g~i~iwd~~-~~~~~~~~~----~h~~~v~~~~~~~~~~~l~s~~~-dg~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~ 300 (540)
+++.+|++. +++....+. .+...+.+++|+|||++|++++. ++.|.+||+. +++.....
T Consensus 119 g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~-------------- 184 (365)
T 1jof_A 119 GYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVG-------------- 184 (365)
T ss_dssp CEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEE--------------
T ss_pred ceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEee--------------
Confidence 999999997 466544433 25568999999999998887653 6799999997 55410000
Q ss_pred eeEEEEeecccccccccCceeeEEEeeeecccccceeeeeeccceeEEEeecccceecccccccccccchhhhhhccccc
Q psy18231 301 ITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEARDS 380 (540)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (540)
.. ....|...
T Consensus 185 ---------------------------------------------------------------------~~-~~~~~g~~ 194 (365)
T 1jof_A 185 ---------------------------------------------------------------------SV-DAPDPGDH 194 (365)
T ss_dssp ---------------------------------------------------------------------EE-ECSSTTCC
T ss_pred ---------------------------------------------------------------------eE-ecCCCCCC
Confidence 00 00112345
Q ss_pred EEEEEecC--CeeEeeeC-CCeEEEEeCC--CCceE---Eee---eC-----C-------ceEEEE-EecCCcEEEeecC
Q psy18231 381 ITSVHVSD--HEILTASL-DCRIRRYDIR--TGNLV---TDY---VG-----E-------PIVDAC-FTRDCQCILTCST 436 (540)
Q Consensus 381 v~~l~~~~--~~l~~~~~-dg~i~iwd~~--~~~~~---~~~---~~-----~-------~i~~~~-~sp~~~~l~~~~~ 436 (540)
+..++|+| +++++++. ++.|.+|+++ +++.. ..+ .. . .+..++ |+|||++|++++.
T Consensus 195 p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~ 274 (365)
T 1jof_A 195 PRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSR 274 (365)
T ss_dssp EEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEE
T ss_pred CCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECC
Confidence 78899998 56766664 7899999765 45542 122 11 1 478999 9999999887764
Q ss_pred C-C-----eEEEEecc-ccchhh---hhccCcCCcceEEEEecC---CCCeEEEeeCC-CcEEEEEecCC
Q psy18231 437 D-E-----CLRLFDKA-TGELLE---EYKGHKSGDFRIECCLDS---KDSQIFCGSSD-GKIYKWQLVDS 492 (540)
Q Consensus 437 d-g-----~i~i~d~~-~~~~~~---~~~~~~~~v~~~~~~~s~---~~~~l~s~s~d-g~i~iwd~~~~ 492 (540)
+ + .|.+|++. +++... ....+......+ +|+| ||++|++++.+ +.|.+|++...
T Consensus 275 ~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~--a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~ 342 (365)
T 1jof_A 275 ANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSN--AVSPCPWSDEWMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp ESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCC--CEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred CCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccc--eecCCCcCCCEEEEEEcCCCeEEEEEEchh
Confidence 3 2 89999986 555432 122333344555 7899 89999998864 89999998765
|
| >2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ... | Back alignment and structure |
|---|
Probab=99.85 E-value=3.3e-19 Score=169.25 Aligned_cols=280 Identities=12% Similarity=0.119 Sum_probs=194.5
Q ss_pred ccceeeeeccccccee---eeeecCeEEEEeCCCCCEEEEee----------CCCcEEEEcCCCCeeEEEeecC------
Q psy18231 145 KEWSIRVYRPLTVNRE---LFVLSGLMHTRFPVDGSYCLTCG----------SDKKIKLWNPYRNLLLKTYGGH------ 205 (540)
Q Consensus 145 ~~~~i~~~~~~~~~~~---~~h~~~v~~v~~spdg~~lat~~----------~dg~i~iwd~~~~~~~~~~~~h------ 205 (540)
.+..+.+|+..+.... ..+..+ .++|+|||++|+++. .+++|.+||..+++.+.++...
T Consensus 29 ~d~~v~v~D~~t~~~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~ 106 (361)
T 2oiz_A 29 TESRVHVYDYTNGKFLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQG 106 (361)
T ss_dssp GGCEEEEEETTTCCEEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCB
T ss_pred ccCeEEEEECCCCeEEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCcccccc
Confidence 3567888887664422 123344 899999999999876 3678999999999988887643
Q ss_pred CcceeEEEEeeCCCeEEEeeC--CCeEEEEEcCCCceeEe-ccccCCceeEEEECCCC-CEEEEecCCCcEEEEEecCCC
Q psy18231 206 AHEVNDATAACDSSQIASGAS--DKSVILWEVTTGQPVRR-WREHASKVTCVKFNEDS-SVVISGSQDNTVMMWDVKSRS 281 (540)
Q Consensus 206 ~~~v~~l~~sp~~~~l~s~s~--dg~i~iwd~~~~~~~~~-~~~h~~~v~~~~~~~~~-~~l~s~~~dg~i~iwd~~~~~ 281 (540)
......++++|||++|+++.. +++|.+||+.+++.+.. +.. .+ ...+.+.|++ ..+++.+.||.+.+|++....
T Consensus 107 g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~-~~-~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g 184 (361)
T 2oiz_A 107 LNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAA-AG-CWSVIPQPNRPRSFMTICGDGGLLTINLGEDG 184 (361)
T ss_dssp CCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGG-TT-EEEEEECTTSSSEEEEEETTSSEEEEEECTTS
T ss_pred CCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecC-CC-cceeEEcCCCCeeEEEECCCCcEEEEEECCCC
Confidence 345678999999999998874 58999999999988877 643 22 2335677765 677888899999999986522
Q ss_pred CCCcchhhhhHhhhhcCCceeEEEEeecccccccccCceeeEEEeeeecccccceeeeeeccceeEEEeecccceecccc
Q psy18231 282 HHPIQVRCLNEALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDV 361 (540)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (540)
. ... ... ...
T Consensus 185 ~-~~~----------------~~~-------------------------------------------------~~~---- 194 (361)
T 2oiz_A 185 K-VAS----------------QSR-------------------------------------------------SKQ---- 194 (361)
T ss_dssp S-EEE----------------EEE-------------------------------------------------CCC----
T ss_pred c-Eee----------------ecc-------------------------------------------------ccc----
Confidence 1 000 000 000
Q ss_pred cccccccchhhhhhcccccEEEE--EecCCeeEeeeCCCeEEEEeCCCCce--EEeee--C----------CceEEEEEe
Q psy18231 362 TPISIHNSCFQALKEARDSITSV--HVSDHEILTASLDCRIRRYDIRTGNL--VTDYV--G----------EPIVDACFT 425 (540)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~v~~l--~~~~~~l~~~~~dg~i~iwd~~~~~~--~~~~~--~----------~~i~~~~~s 425 (540)
.+.....++ .+ ...+..++..+.++.+.++|+..... ...+. . .....++|+
T Consensus 195 -----------~~~~~~~~~-~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~ 262 (361)
T 2oiz_A 195 -----------MFSVKDDPI-FIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLH 262 (361)
T ss_dssp -----------CSCTTTSCB-CSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEE
T ss_pred -----------eEcCCCCce-EEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEe
Confidence 000000000 00 11123455556788899999875542 12111 0 112237899
Q ss_pred cCCcEEEeecC-----------CCeEEEEeccccchhhhhccCcCCcceEEEEecCCCCeEEEeeCCCcEEEEEecCC--
Q psy18231 426 RDCQCILTCST-----------DECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDS-- 492 (540)
Q Consensus 426 p~~~~l~~~~~-----------dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~s~~~~~l~s~s~dg~i~iwd~~~~-- 492 (540)
|+++.++++.. .+.|.+||+.+++.+.++..+. ...+ +|+|||++|++++. ++|.+||..++
T Consensus 263 ~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~--p~~i--a~spdg~~l~v~n~-~~v~v~D~~t~~l 337 (361)
T 2oiz_A 263 RASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD--ALSM--TIDQQRNLMLTLDG-GNVNVYDISQPEP 337 (361)
T ss_dssp TTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT--CCEE--EEETTTTEEEEECS-SCEEEEECSSSSC
T ss_pred cCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC--eeEE--EECCCCCEEEEeCC-CeEEEEECCCCcc
Confidence 99888777543 3589999999999999988877 6666 89999999998887 99999999999
Q ss_pred cceeEEEecccceeeeEEEEcCCCc
Q psy18231 493 SQISTLIHSVGKAVVNSLCSHPTRK 517 (540)
Q Consensus 493 ~~~~~~~~~~~~~~v~~l~~s~d~~ 517 (540)
+.+.++. .+......++++|+|.
T Consensus 338 ~~~~~i~--~~G~~P~~~~~~p~G~ 360 (361)
T 2oiz_A 338 KLLRTIE--GAAEASLQVQFHPVGG 360 (361)
T ss_dssp EEEEEET--TSCSSEEEEEECCCSC
T ss_pred eeeEEec--cCCCCcEEEEecCCCC
Confidence 8888875 5667788999999986
|
| >4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ... | Back alignment and structure |
|---|
Probab=99.85 E-value=1.1e-19 Score=190.06 Aligned_cols=316 Identities=10% Similarity=0.047 Sum_probs=180.9
Q ss_pred CeEEEEeCCCCCEEEEeeCCCcEEEEcCCCCeeEEEeecCCcc-----eeEEEEeeCCCeEEEeeCC---------CeEE
Q psy18231 166 GLMHTRFPVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHE-----VNDATAACDSSQIASGASD---------KSVI 231 (540)
Q Consensus 166 ~v~~v~~spdg~~lat~~~dg~i~iwd~~~~~~~~~~~~h~~~-----v~~l~~sp~~~~l~s~s~d---------g~i~ 231 (540)
...+++|+|||++|+++ |++|++||+.+++....+.+|... ..+++|||||++|+.++.+ +.+.
T Consensus 18 ~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~ 95 (740)
T 4a5s_A 18 KLYSLRWISDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYD 95 (740)
T ss_dssp CCCCEEECSSSEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEE
T ss_pred cccccEECCCCcEEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEE
Confidence 35688999999999886 999999999999988888877643 2447899999999998876 5667
Q ss_pred EEEcCCCceeEeccccCCceeEEEECCCCCEEEEecCCCcEEEEEecCCCCCCcchhhhhHhhhhcCCceeEEEEeeccc
Q psy18231 232 LWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKST 311 (540)
Q Consensus 232 iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (540)
+||+.+++.. .+..|...+...+|||||+.|+.+. |+.|.+|++.+++...+.... ..
T Consensus 96 ~~d~~~~~~~-~l~~~~~~~~~~~~SPdG~~la~~~-~~~i~~~~~~~~~~~~lt~~g-------~~------------- 153 (740)
T 4a5s_A 96 IYDLNKRQLI-TEERIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYRITWTG-------KE------------- 153 (740)
T ss_dssp EEETTTTEEC-CSSCCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCSCC-------BT-------------
T ss_pred EEECCCCcEE-EcccCCCcceeeEECCCCCEEEEEE-CCeEEEEECCCCceEEEcCCC-------Cc-------------
Confidence 9999998754 4667788899999999999999885 689999999877632111000 00
Q ss_pred ccccccCceeeEEEeeeecccccceeeeeeccceeEEEeecccceecccccccccccchhhhhhcccccEEEEEecCCee
Q psy18231 312 KNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEARDSITSVHVSDHEI 391 (540)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~l 391 (540)
.....+... +.+. ...-+.......+.++..+++. ......+..+...... ....+...+..+.+..
T Consensus 154 -~~~~~g~~~---~v~~-ee~~~~~~~~~wSpDg~~la~~---~~d~~~v~~~~~~~~~--~~~~~~~~~~~~~yp~--- 220 (740)
T 4a5s_A 154 -DIIYNGITD---WVYE-EEVFSAYSALWWSPNGTFLAYA---QFNDTEVPLIEYSFYS--DESLQYPKTVRVPYPK--- 220 (740)
T ss_dssp -TTEEESBCC---HHHH-HHTSSSSBCEEECTTSSEEEEE---EEECTTCCEEEEEECC--STTCSSCEEEEEECCB---
T ss_pred -cceecCccc---cccc-chhcCCCcceEECCCCCEEEEE---EEcccCCceEEEEeec--CCCCCCCcceeecCCC---
Confidence 000000000 0000 0000001112223333222211 0000000000000000 0001222233333322
Q ss_pred EeeeC--CCeEEEEeCCC---Cc--eEEeee--------CCceEEEEEecCCcEEEeec----CCCeEEEEeccccc---
Q psy18231 392 LTASL--DCRIRRYDIRT---GN--LVTDYV--------GEPIVDACFTRDCQCILTCS----TDECLRLFDKATGE--- 449 (540)
Q Consensus 392 ~~~~~--dg~i~iwd~~~---~~--~~~~~~--------~~~i~~~~~sp~~~~l~~~~----~dg~i~i~d~~~~~--- 449 (540)
.|.. ...|++||+.+ ++ ....+. ...+..++|+|||+.++... .+..|++||+.+++
T Consensus 221 -~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~ 299 (740)
T 4a5s_A 221 -AGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRW 299 (740)
T ss_dssp -TTSCCCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEE
T ss_pred -CcCcCCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCcccc
Confidence 1111 22688999998 73 222332 24588999999999766543 34479999999887
Q ss_pred -hh--hhh--ccCcCCcc---eEEEEecCCCCeEE-EeeC-C--CcEEEEEecCCcceeEEEecccceeeeEEEEcCCCc
Q psy18231 450 -LL--EEY--KGHKSGDF---RIECCLDSKDSQIF-CGSS-D--GKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRK 517 (540)
Q Consensus 450 -~~--~~~--~~~~~~v~---~~~~~~s~~~~~l~-s~s~-d--g~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~ 517 (540)
+. ..+ ..|...+. ....+|+|||+.|+ ..+. + ..|++||+..++.. .+. .....|..+.+ +|++
T Consensus 300 ~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~~~-~lT--~g~~~v~~~~~-~d~~ 375 (740)
T 4a5s_A 300 NCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDCT-FIT--KGTWEVIGIEA-LTSD 375 (740)
T ss_dssp EECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSSCE-ESC--CSSSCEEEEEE-ECSS
T ss_pred ceeEEEEeeeccCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCceE-ecc--cCCEEEEEEEE-EeCC
Confidence 32 333 44555544 11237999999877 6653 3 46888887665443 443 23444555432 3465
Q ss_pred EEEeec
Q psy18231 518 HIMSAC 523 (540)
Q Consensus 518 ~l~s~~ 523 (540)
.|+..+
T Consensus 376 ~i~f~~ 381 (740)
T 4a5s_A 376 YLYYIS 381 (740)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 555443
|
| >3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=99.85 E-value=1.9e-20 Score=181.17 Aligned_cols=297 Identities=10% Similarity=-0.002 Sum_probs=178.2
Q ss_pred eecCeEEEEeCCCCCEEEEeeCC---CcEEEEcCCCCeeEEEeecCCcceeEEEEeeCCCeEEEeeCCCeEEEEEcCCCc
Q psy18231 163 VLSGLMHTRFPVDGSYCLTCGSD---KKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQ 239 (540)
Q Consensus 163 h~~~v~~v~~spdg~~lat~~~d---g~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~ 239 (540)
|...+..++|||||++|+..... ..|.+||+.+++......++......+.|+|||++|+.++.++.|.+||+.+++
T Consensus 34 ~~~~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~~~ 113 (396)
T 3c5m_A 34 HRNYFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFISTDERAFFYVKNELNLMKVDLETLE 113 (396)
T ss_dssp ECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTTTCEECTTSSEEEEEETTTEEEEEETTTCC
T ss_pred cceeeecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCCCCccccceECCCCCEEEEEEcCCcEEEEECCCCC
Confidence 34457788999999998876442 478889998887654433333333348899999999999999999999999887
Q ss_pred eeEeccccCCceeEEEECCCCCEEEEecCCCcEEEEEecCCCCCCcchhhhhHhhhhcCCceeEEEEeecccccc-cccC
Q psy18231 240 PVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNH-LSNG 318 (540)
Q Consensus 240 ~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 318 (540)
.......+.. |+++++.|+..+.++...+|.....- ++.+. +...
T Consensus 114 ~~~~~~~~~~------~~~~g~~l~~~~~~~~~~~~~~~~~~----------------------------spdg~~~~~~ 159 (396)
T 3c5m_A 114 EQVIYTVDEE------WKGYGTWVANSDCTKLVGIEILKRDW----------------------------QPLTSWEKFA 159 (396)
T ss_dssp EEEEEECCTT------EEEEEEEEECTTSSEEEEEEEEGGGC----------------------------CCCCSHHHHH
T ss_pred cEEEEecccc------cCCCCCEEEeccCCcccccccccccc----------------------------CCCCcceeee
Confidence 6655544443 45555666655555444444321000 00000 0000
Q ss_pred ceeeEEEeeeecccccceeeeeeccceeEEEeecccceecccccccccccchhhhhhcccccEEEEEecC---CeeEeee
Q psy18231 319 LLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEARDSITSVHVSD---HEILTAS 395 (540)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~---~~l~~~~ 395 (540)
. .........+.+++..+... ..+..+...+..+.|+| +.++..+
T Consensus 160 ~------------------~~~~~~~~~l~~~d~~~g~~--------------~~~~~~~~~~~~~~~sp~dg~~l~~~~ 207 (396)
T 3c5m_A 160 E------------------FYHTNPTCRLIKVDIETGEL--------------EVIHQDTAWLGHPIYRPFDDSTVGFCH 207 (396)
T ss_dssp H------------------HHHTCCCEEEEEEETTTCCE--------------EEEEEESSCEEEEEEETTEEEEEEEEE
T ss_pred e------------------eccCCCcceEEEEECCCCcE--------------EeeccCCcccccceECCCCCCEEEEEe
Confidence 0 00000111122222111100 01113345567778876 3355444
Q ss_pred CC------CeEEEEeCCCCceEEeeeC---CceEEEEEecCCcEEEeecCC-----CeEEEEeccccchhhhhccCcCCc
Q psy18231 396 LD------CRIRRYDIRTGNLVTDYVG---EPIVDACFTRDCQCILTCSTD-----ECLRLFDKATGELLEEYKGHKSGD 461 (540)
Q Consensus 396 ~d------g~i~iwd~~~~~~~~~~~~---~~i~~~~~sp~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~v 461 (540)
.+ ..|.+||+.+++....... ..+..++|+|+|++|+..+.+ +.|++||+.+++...... ... .
T Consensus 208 ~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~-~~~-~ 285 (396)
T 3c5m_A 208 EGPHDLVDARMWLVNEDGSNVRKIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMV-MPP-C 285 (396)
T ss_dssp CSCSSSCSCCCEEEETTSCCCEESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEE-CCS-E
T ss_pred cCCCCCCCceEEEEECCCCceeEeeccCCCccccceEECCCCCEEEEEecCCCCccceEEEEECCCCCeEEeee-CCC-C
Confidence 33 4688999876654333332 257889999999988776543 459999998876432221 111 1
Q ss_pred ceEEEEecC-CCCeEEEee----------------CCCcEEEEEecCCcceeEEEecccce-----------eeeEEEEc
Q psy18231 462 FRIECCLDS-KDSQIFCGS----------------SDGKIYKWQLVDSSQISTLIHSVGKA-----------VVNSLCSH 513 (540)
Q Consensus 462 ~~~~~~~s~-~~~~l~s~s----------------~dg~i~iwd~~~~~~~~~~~~~~~~~-----------~v~~l~~s 513 (540)
. ..|+| ||+++++++ .+..|++||+.+++.. .+. .+.. .+..++|+
T Consensus 286 ~---~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~-~l~--~~~~~~~~~~~~~~~~~~~~~~s 359 (396)
T 3c5m_A 286 S---HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSAQ-KLC--KHSTSWDVLDGDRQITHPHPSFT 359 (396)
T ss_dssp E---EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTTBCC-EEE--ECCCCCCCBTTBSSTTCCCCEEC
T ss_pred C---CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCceE-Ecc--CCCCccccccccccCCCCCceEc
Confidence 1 47999 999888754 3478999998877653 444 3433 25678999
Q ss_pred CCCcEEEeec--CCeeEEEEcc
Q psy18231 514 PTRKHIMSAC--GNNVKLWTAE 533 (540)
Q Consensus 514 ~d~~~l~s~~--d~~i~iw~~~ 533 (540)
|||+.|+.++ ++...+|.++
T Consensus 360 ~dg~~l~~~s~~~~~~~l~~~~ 381 (396)
T 3c5m_A 360 PNDDGVLFTSDFEGVPAIYIAD 381 (396)
T ss_dssp TTSSEEEEEECTTSSCEEEEEE
T ss_pred cCCCeEEEEecCCCCceEEEEE
Confidence 9999887766 6666666654
|
| >2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ... | Back alignment and structure |
|---|
Probab=99.84 E-value=6.5e-19 Score=167.24 Aligned_cols=264 Identities=10% Similarity=0.090 Sum_probs=187.7
Q ss_pred CCCCEEEEee------CCCcEEEEcCCCCeeEEEeecCCcceeEEEEeeCCCeEEEeeC----------CCeEEEEEcCC
Q psy18231 174 VDGSYCLTCG------SDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGAS----------DKSVILWEVTT 237 (540)
Q Consensus 174 pdg~~lat~~------~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~----------dg~i~iwd~~~ 237 (540)
++++++++.. .|+.|.+||..+++.+.++..+..+ .++|+||+++|++++. +++|.+||+.+
T Consensus 13 ~~~~~~yv~~~~~~~~~d~~v~v~D~~t~~~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t 90 (361)
T 2oiz_A 13 PQENRIYVMDSVFMHLTESRVHVYDYTNGKFLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADK 90 (361)
T ss_dssp CGGGEEEEEECCGGGGGGCEEEEEETTTCCEEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTT
T ss_pred CCCCEEEEECCCCCccccCeEEEEECCCCeEEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcC
Confidence 3666766543 3789999999999999888876665 8999999999998863 67899999999
Q ss_pred CceeEecccc------CCceeEEEECCCCCEEEEecC--CCcEEEEEecCCCCCCcchhhhhHhhhhcCCceeEEEEeec
Q psy18231 238 GQPVRRWREH------ASKVTCVKFNEDSSVVISGSQ--DNTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVK 309 (540)
Q Consensus 238 ~~~~~~~~~h------~~~v~~~~~~~~~~~l~s~~~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (540)
++.+..+... ......++++|||++|+++.. +++|.+||+.+++. +.
T Consensus 91 ~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~--~~----------------------- 145 (361)
T 2oiz_A 91 LTFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDY--VE----------------------- 145 (361)
T ss_dssp CCEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEE--EE-----------------------
T ss_pred CcEEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcE--EE-----------------------
Confidence 9888776532 345778999999999998864 57899999987651 00
Q ss_pred ccccccccCceeeEEEeeeecccccceeeeeeccceeEEEeecccceecccccccccccchhhh-hhcccccEEEEEecC
Q psy18231 310 STKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQA-LKEARDSITSVHVSD 388 (540)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~l~~~~ 388 (540)
. +. .. ....+.+.|
T Consensus 146 ---------------------------------------------------------------~~i~-~~-~~~~v~~~p 160 (361)
T 2oiz_A 146 ---------------------------------------------------------------DVTA-AA-GCWSVIPQP 160 (361)
T ss_dssp ---------------------------------------------------------------EEGG-GT-TEEEEEECT
T ss_pred ---------------------------------------------------------------EEec-CC-CcceeEEcC
Confidence 0 00 00 011122333
Q ss_pred ---CeeEeeeCCCeEEEEeCCC-CceEEee------eC-CceEEEEEecCCcEEEeecCCCeEEEEeccccchh--hhhc
Q psy18231 389 ---HEILTASLDCRIRRYDIRT-GNLVTDY------VG-EPIVDACFTRDCQCILTCSTDECLRLFDKATGELL--EEYK 455 (540)
Q Consensus 389 ---~~l~~~~~dg~i~iwd~~~-~~~~~~~------~~-~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~--~~~~ 455 (540)
..+++.+.||.+.+|+... ++..... .. .....+.++|++..++..+.++.+.++|+...... ..+.
T Consensus 161 ~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~ 240 (361)
T 2oiz_A 161 NRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDPIFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWS 240 (361)
T ss_dssp TSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSCBCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEE
T ss_pred CCCeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCCCCceEEEecccCCEEEEEeCCCeEEEEEecCCCceeccccc
Confidence 4677888899999998865 5444221 11 11123344778877777788899999998654311 1110
Q ss_pred --------cC--cCCcceEEEEecCCCCeEEEeeC-----------CCcEEEEEecCCcceeEEEecccceeeeEEEEcC
Q psy18231 456 --------GH--KSGDFRIECCLDSKDSQIFCGSS-----------DGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHP 514 (540)
Q Consensus 456 --------~~--~~~v~~~~~~~s~~~~~l~s~s~-----------dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~ 514 (540)
.. ......+ +++|+++.++++.. ++.|.+||+.+++.+.++. .+. +.+++|+|
T Consensus 241 ~~~~~~~~~~~~p~g~~~~--a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~--~~~--p~~ia~sp 314 (361)
T 2oiz_A 241 LLNDEDKAKNWVPGGYNLV--GLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIP--GRD--ALSMTIDQ 314 (361)
T ss_dssp SCCHHHHHTTCEECCSSCE--EEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEE--CTT--CCEEEEET
T ss_pred ccCccccccccccCCeeEE--EEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEe--cCC--eeEEEECC
Confidence 00 0111124 78999888777643 3589999999999999998 555 99999999
Q ss_pred CCcEEEeecCCeeEEEEcccc
Q psy18231 515 TRKHIMSACGNNVKLWTAEED 535 (540)
Q Consensus 515 d~~~l~s~~d~~i~iw~~~~~ 535 (540)
||++|+++++++|.+||.+++
T Consensus 315 dg~~l~v~n~~~v~v~D~~t~ 335 (361)
T 2oiz_A 315 QRNLMLTLDGGNVNVYDISQP 335 (361)
T ss_dssp TTTEEEEECSSCEEEEECSSS
T ss_pred CCCEEEEeCCCeEEEEECCCC
Confidence 999999877899999999876
|
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A | Back alignment and structure |
|---|
Probab=99.82 E-value=1.3e-18 Score=180.14 Aligned_cols=278 Identities=11% Similarity=-0.001 Sum_probs=190.2
Q ss_pred eeeecCeEEEEeCCCCCEEEEe--eCCCcEEEEcCCCCeeEEEeecCCccee---------EEEEe--eCCCe-EEEeeC
Q psy18231 161 LFVLSGLMHTRFPVDGSYCLTC--GSDKKIKLWNPYRNLLLKTYGGHAHEVN---------DATAA--CDSSQ-IASGAS 226 (540)
Q Consensus 161 ~~h~~~v~~v~~spdg~~lat~--~~dg~i~iwd~~~~~~~~~~~~h~~~v~---------~l~~s--p~~~~-l~s~s~ 226 (540)
..|...+..++|++++-++++. +.++...||....+.....+..|...+. ...|+ |||+. |+.++.
T Consensus 20 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~~~~ 99 (662)
T 3azo_A 20 ASRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGAEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVFTHF 99 (662)
T ss_dssp HHTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSCEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEEEBT
T ss_pred hhcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCCCCcceeCCCCccccccccccCCccceeeeecCCCeEEEEEEC
Confidence 4577889999999887777776 5688999998655556677777776666 66676 99998 776554
Q ss_pred -CCeEEEEEcC--CCceeEeccc-----cCCceeEEEECCCCCEEEEecCC----------CcEEEEEecC------CCC
Q psy18231 227 -DKSVILWEVT--TGQPVRRWRE-----HASKVTCVKFNEDSSVVISGSQD----------NTVMMWDVKS------RSH 282 (540)
Q Consensus 227 -dg~i~iwd~~--~~~~~~~~~~-----h~~~v~~~~~~~~~~~l~s~~~d----------g~i~iwd~~~------~~~ 282 (540)
+..|.+|++. .......+.. |...+..++|+|||+.|++++.+ ..|.+||+.+ ++.
T Consensus 100 ~~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 179 (662)
T 3azo_A 100 GDQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAV 179 (662)
T ss_dssp TTCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGS
T ss_pred CCCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCce
Confidence 5567777765 2033444555 67788999999999999998876 5788888876 221
Q ss_pred CCcchhhhhHhhhhcCCceeEEEEeecccccccccCceeeEEEeeeecccccceeeeeeccceeEEEeecccceeccccc
Q psy18231 283 HPIQVRCLNEALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVT 362 (540)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (540)
T Consensus 180 -------------------------------------------------------------------------------- 179 (662)
T 3azo_A 180 -------------------------------------------------------------------------------- 179 (662)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccchhhhhh-cccccEEEEEecC--CeeEeeeCC--------CeEEEEeCC-CC---ceEEeee--CCceEEEEEe
Q psy18231 363 PISIHNSCFQALK-EARDSITSVHVSD--HEILTASLD--------CRIRRYDIR-TG---NLVTDYV--GEPIVDACFT 425 (540)
Q Consensus 363 ~~~~~~~~~~~~~-~~~~~v~~l~~~~--~~l~~~~~d--------g~i~iwd~~-~~---~~~~~~~--~~~i~~~~~s 425 (540)
..+. .+...+..++|+| +.|+.++.+ ..|++||+. ++ +...... ...+..+.|+
T Consensus 180 ---------~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~s 250 (662)
T 3azo_A 180 ---------RELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWA 250 (662)
T ss_dssp ---------EESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEEC
T ss_pred ---------eEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEEC
Confidence 0122 2334566778888 667766644 379999999 56 3333333 3578999999
Q ss_pred cCCcEEEeecCCC--eEEEEeccccchhhhhccCcCC--------cceEEEEecCCCCeEEEeeCCCcEEEEEecC-Ccc
Q psy18231 426 RDCQCILTCSTDE--CLRLFDKATGELLEEYKGHKSG--------DFRIECCLDSKDSQIFCGSSDGKIYKWQLVD-SSQ 494 (540)
Q Consensus 426 p~~~~l~~~~~dg--~i~i~d~~~~~~~~~~~~~~~~--------v~~~~~~~s~~~~~l~s~s~dg~i~iwd~~~-~~~ 494 (540)
|||+++++++.++ .|.+||..+++.......+... +..+ +|+++++++++++. +.+++|.+.. +..
T Consensus 251 pdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~--~~~~~~~~~~~~~~-~~~~l~~~d~~~~~ 327 (662)
T 3azo_A 251 PDGSLIVATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWF--APLANGLIAVVHGK-GAAVLGILDPESGE 327 (662)
T ss_dssp TTSCEEEEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSE--EECTTSCEEEEEBS-SSCEEEEEETTTTE
T ss_pred CCCeEEEEECCCCCeEEEEEECCCCceeecccccccccCccccccCceE--eEeCCCEEEEEEEc-CccEEEEEECCCCc
Confidence 9999888888888 6777777666654333333221 2334 78899999999998 9999995542 233
Q ss_pred eeEEEecccceeeeEE-EEcCCCcEEEeec-CCeeEEEEc
Q psy18231 495 ISTLIHSVGKAVVNSL-CSHPTRKHIMSAC-GNNVKLWTA 532 (540)
Q Consensus 495 ~~~~~~~~~~~~v~~l-~~s~d~~~l~s~~-d~~i~iw~~ 532 (540)
+..+. .|...+..+ +++++.-++++++ +....+|.+
T Consensus 328 ~~~l~--~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~ 365 (662)
T 3azo_A 328 LVDAA--GPWTEWAATLTVSGTRAVGVAASPRTAYEVVEL 365 (662)
T ss_dssp EEECC--SSCCEEEEEEEEETTEEEEEEEETTEEEEEEEE
T ss_pred EEEec--CCCCeEEEEEecCCCEEEEEEcCCCCCCEEEEE
Confidence 56665 677778877 5554444444455 554445443
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 | Back alignment and structure |
|---|
Probab=99.82 E-value=3.2e-17 Score=150.81 Aligned_cols=246 Identities=10% Similarity=0.172 Sum_probs=175.5
Q ss_pred eeecCeEEEEeCCCCCEEEEeeCCCcEEEEcCCCCeeEEEee------cCCcceeEEEEe-eCCCeEEEeeC-CCeEEEE
Q psy18231 162 FVLSGLMHTRFPVDGSYCLTCGSDKKIKLWNPYRNLLLKTYG------GHAHEVNDATAA-CDSSQIASGAS-DKSVILW 233 (540)
Q Consensus 162 ~h~~~v~~v~~spdg~~lat~~~dg~i~iwd~~~~~~~~~~~------~h~~~v~~l~~s-p~~~~l~s~s~-dg~i~iw 233 (540)
++.....+++++|+|+++++...++.|.+||.. ++.+..+. +|...+.++++. ++++++++... ++.|.+|
T Consensus 27 g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~ 105 (286)
T 1q7f_A 27 GQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIY 105 (286)
T ss_dssp TCBSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEE
T ss_pred CccCCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEE
Confidence 466789999999999988888889999999976 66666664 244578899995 67766666643 8899999
Q ss_pred EcCCCceeEecc-ccCCceeEEEECCCCCEEEEecCCCcEEEEEecCCCCCCcchhhhhHhhhhcCCceeEEEEeecccc
Q psy18231 234 EVTTGQPVRRWR-EHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTK 312 (540)
Q Consensus 234 d~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (540)
| .+++.+..+. .+...+..++++++++++++...++.|.+||.....
T Consensus 106 d-~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~------------------------------- 153 (286)
T 1q7f_A 106 N-QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNGNV------------------------------- 153 (286)
T ss_dssp C-TTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTSCE-------------------------------
T ss_pred C-CCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCCCCE-------------------------------
Confidence 9 5777766653 344678999999999888877778888888743210
Q ss_pred cccccCceeeEEEeeeecccccceeeeeeccceeEEEeecccceecccccccccccchhhhhhcccccEEEEEecCCeeE
Q psy18231 313 NHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEARDSITSVHVSDHEIL 392 (540)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~ 392 (540)
T Consensus 154 -------------------------------------------------------------------------------- 153 (286)
T 1q7f_A 154 -------------------------------------------------------------------------------- 153 (286)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eeeCCCeEEEEeCCCCceEEeeeCCceEEEEEecCCcEEEeecCCCeEEEEeccccchhhhhccC--cCCcceEEEEecC
Q psy18231 393 TASLDCRIRRYDIRTGNLVTDYVGEPIVDACFTRDCQCILTCSTDECLRLFDKATGELLEEYKGH--KSGDFRIECCLDS 470 (540)
Q Consensus 393 ~~~~dg~i~iwd~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~--~~~v~~~~~~~s~ 470 (540)
+..+... + ....+..++++|+|+++++...++.|++||. +++.+..+..+ ......+ ++++
T Consensus 154 -------~~~~~~~-~------~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~g~~~~p~~i--~~d~ 216 (286)
T 1q7f_A 154 -------LHKFGCS-K------HLEFPNGVVVNDKQEIFISDNRAHCVKVFNY-EGQYLRQIGGEGITNYPIGV--GINS 216 (286)
T ss_dssp -------EEEEECT-T------TCSSEEEEEECSSSEEEEEEGGGTEEEEEET-TCCEEEEESCTTTSCSEEEE--EECT
T ss_pred -------EEEeCCC-C------ccCCcEEEEECCCCCEEEEECCCCEEEEEcC-CCCEEEEEccCCccCCCcEE--EECC
Confidence 0000000 0 0124677888888887777777888888886 34444444332 2334445 8999
Q ss_pred CCCeEEEeeCCC-cEEEEEecCCcceeEEEecccceeeeEEEEcCCCcEEEeecCCeeEEEEcccccCC
Q psy18231 471 KDSQIFCGSSDG-KIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQ 538 (540)
Q Consensus 471 ~~~~l~s~s~dg-~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~d~~i~iw~~~~~~~~ 538 (540)
+|+++++...++ .|.+|| .+++.+..+........+.+++++|+|+++++..|++|++|++......
T Consensus 217 ~G~l~v~~~~~~~~i~~~~-~~g~~~~~~~~~~~~~~~~~i~~~~~g~l~vs~~~~~v~v~~~~~~~pv 284 (286)
T 1q7f_A 217 NGEILIADNHNNFNLTIFT-QDGQLISALESKVKHAQCFDVALMDDGSVVLASKDYRLYIYRYVQLAPV 284 (286)
T ss_dssp TCCEEEEECSSSCEEEEEC-TTSCEEEEEEESSCCSCEEEEEEETTTEEEEEETTTEEEEEECSCCCCT
T ss_pred CCCEEEEeCCCCEEEEEEC-CCCCEEEEEcccCCCCcceeEEECCCCcEEEECCCCeEEEEEccccccc
Confidence 999888888776 999999 5677777776323334578999999998777744999999998765443
|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A | Back alignment and structure |
|---|
Probab=99.81 E-value=7.8e-18 Score=158.70 Aligned_cols=266 Identities=9% Similarity=0.073 Sum_probs=188.1
Q ss_pred cCeEEEEeCCCCCEEEEeeCCCcEEEEcCCCCeeEEEeecCCcceeEEEEeeCCCeEEEeeCCCeEEEEEcCCCceeEec
Q psy18231 165 SGLMHTRFPVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPVRRW 244 (540)
Q Consensus 165 ~~v~~v~~spdg~~lat~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~ 244 (540)
..|.+++|++++..++..+.++.++.| .++....+..+...+.+++|+|++++++++..++.|.+||..+++.....
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~ 82 (333)
T 2dg1_A 6 QDLPTLFYSGKSNSAVPIISESELQTI---TAEPWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPF 82 (333)
T ss_dssp CCCCBCCSCGGGGCSSCCCCGGGSCEE---ECEEEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEE
T ss_pred cccceeeecCCccceeEEeecccCccc---ccceeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEe
Confidence 457788999999888877888999999 45666777777788899999999998888888999999999888766544
Q ss_pred cccCCceeEEEECCCCCEEEEecCC----CcEEEEEecCCCCCCcchhhhhHhhhhcCCceeEEEEeecccccccccCce
Q psy18231 245 REHASKVTCVKFNEDSSVVISGSQD----NTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHLSNGLL 320 (540)
Q Consensus 245 ~~h~~~v~~~~~~~~~~~l~s~~~d----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (540)
..+...+.+++++++++++++...+ +.|.+||..++......
T Consensus 83 ~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~---------------------------------- 128 (333)
T 2dg1_A 83 VSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDII---------------------------------- 128 (333)
T ss_dssp ECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEE----------------------------------
T ss_pred eCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEE----------------------------------
Confidence 4567789999999999888877666 68999988765421000
Q ss_pred eeEEEeeeecccccceeeeeeccceeEEEeecccceecccccccccccchhhhhhcccccEEEEEecC-CeeEeeeC---
Q psy18231 321 TKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEARDSITSVHVSD-HEILTASL--- 396 (540)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~-~~l~~~~~--- 396 (540)
....+...+.++++++ ..++.++.
T Consensus 129 ----------------------------------------------------~~~~~~~~~~~i~~d~~g~l~v~~~~~~ 156 (333)
T 2dg1_A 129 ----------------------------------------------------EDLSTAYCIDDMVFDSKGGFYFTDFRGY 156 (333)
T ss_dssp ----------------------------------------------------CSSSSCCCEEEEEECTTSCEEEEECCCB
T ss_pred ----------------------------------------------------ccCccCCcccceEECCCCCEEEEecccc
Confidence 0001234577888887 44444443
Q ss_pred ----CCeEEEEeCCCCceEEeee-CCceEEEEEecCCcEEE-eecCCCeEEEEeccc-cchhhh--------hccCcCCc
Q psy18231 397 ----DCRIRRYDIRTGNLVTDYV-GEPIVDACFTRDCQCIL-TCSTDECLRLFDKAT-GELLEE--------YKGHKSGD 461 (540)
Q Consensus 397 ----dg~i~iwd~~~~~~~~~~~-~~~i~~~~~sp~~~~l~-~~~~dg~i~i~d~~~-~~~~~~--------~~~~~~~v 461 (540)
.+.|..+|..+++...... ...+..++|+|+++.|+ +.+.++.|.+||..+ +..+.. +.++ ...
T Consensus 157 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~-~~~ 235 (333)
T 2dg1_A 157 STNPLGGVYYVSPDFRTVTPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGH-EGP 235 (333)
T ss_dssp TTBCCEEEEEECTTSCCEEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSS-SEE
T ss_pred ccCCCceEEEEeCCCCEEEEeecCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCC-CCC
Confidence 3567777776555433222 24578999999998554 455678999999863 332221 1111 123
Q ss_pred ceEEEEecCCCCeEEEeeCCCcEEEEEecCCcceeEEEecc----cceeeeEEEEcCCCcEEEeec
Q psy18231 462 FRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSV----GKAVVNSLCSHPTRKHIMSAC 523 (540)
Q Consensus 462 ~~~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~----~~~~v~~l~~s~d~~~l~s~~ 523 (540)
..+ +++++|+++++...++.|.+||. +++.+..+..+. |...+.+++|+||++.|+.++
T Consensus 236 ~~i--~~d~~G~l~v~~~~~~~v~~~d~-~g~~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~ 298 (333)
T 2dg1_A 236 DSC--CIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICS 298 (333)
T ss_dssp EEE--EEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEE
T ss_pred Cce--EECCCCCEEEEEcCCCEEEEECC-CCCEEEEEEcCCCccccccCcceEEECCCCCEEEEEe
Confidence 334 89999998888878899999997 677777775211 112689999999987776655
|
| >3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=2e-17 Score=155.29 Aligned_cols=253 Identities=12% Similarity=0.108 Sum_probs=182.1
Q ss_pred ecCeEEEEeCCCCCEEEEeeCC------------------------CcEEEEcCCCCeeEEEee-cCCcceeEEEEeeCC
Q psy18231 164 LSGLMHTRFPVDGSYCLTCGSD------------------------KKIKLWNPYRNLLLKTYG-GHAHEVNDATAACDS 218 (540)
Q Consensus 164 ~~~v~~v~~spdg~~lat~~~d------------------------g~i~iwd~~~~~~~~~~~-~h~~~v~~l~~sp~~ 218 (540)
.+.+.+++++|+|+++++...+ ++|.+||..+++.+..+. ++-.....++++|+|
T Consensus 23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g 102 (329)
T 3fvz_A 23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDG 102 (329)
T ss_dssp CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTTS
T ss_pred cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCCC
Confidence 4779999999999998887766 479999999898877664 445678999999999
Q ss_pred CeEEEeeCCCeEEEEEcCCCc-eeEec---------cccCCceeEEEECC-CCCEEEEec-CCCcEEEEEecCCCCCCcc
Q psy18231 219 SQIASGASDKSVILWEVTTGQ-PVRRW---------REHASKVTCVKFNE-DSSVVISGS-QDNTVMMWDVKSRSHHPIQ 286 (540)
Q Consensus 219 ~~l~s~s~dg~i~iwd~~~~~-~~~~~---------~~h~~~v~~~~~~~-~~~~l~s~~-~dg~i~iwd~~~~~~~~~~ 286 (540)
+++++...++.|++||..... .+..+ ..+......++++| ++.++++.+ .++.|++|+. +++. ..
T Consensus 103 ~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~~-~g~~--~~ 179 (329)
T 3fvz_A 103 NYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFSP-SGKF--VT 179 (329)
T ss_dssp CEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEECT-TSCE--EE
T ss_pred CEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEcC-CCCE--EE
Confidence 999999889999999975442 44444 24455788999999 788777776 5888999983 2220 00
Q ss_pred hhhhhHhhhhcCCceeEEEEeecccccccccCceeeEEEeeeecccccceeeeeeccceeEEEeecccceeccccccccc
Q psy18231 287 VRCLNEALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISI 366 (540)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (540)
T Consensus 180 -------------------------------------------------------------------------------- 179 (329)
T 3fvz_A 180 -------------------------------------------------------------------------------- 179 (329)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccchhhhhhcccccEEEEEecCCeeEeeeCCCeEEEEeCCCCceEEeeeCCceEEEEEecC-CcEEEeecCCCeEEEEec
Q psy18231 367 HNSCFQALKEARDSITSVHVSDHEILTASLDCRIRRYDIRTGNLVTDYVGEPIVDACFTRD-CQCILTCSTDECLRLFDK 445 (540)
Q Consensus 367 ~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~i~~~~~sp~-~~~l~~~~~dg~i~i~d~ 445 (540)
. +...+ .+. ....+ .-.....++++|+ ++++++...++.|++||.
T Consensus 180 ----------------~-------~~~~g-~~~----~~~~~------~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~ 225 (329)
T 3fvz_A 180 ----------------Q-------WGEES-SGS----SPRPG------QFSVPHSLALVPHLDQLCVADRENGRIQCFKT 225 (329)
T ss_dssp ----------------E-------ECEEC-CSS----SCCTT------EESCEEEEEEETTTTEEEEEETTTTEEEEEET
T ss_pred ----------------E-------eccCC-CCC----CCCCc------ccCCCcEEEEECCCCEEEEEECCCCEEEEEEC
Confidence 0 00000 000 00000 0024678999998 788888888899999999
Q ss_pred cccchhhhhcc--CcCCcceEEEEecC------CCCeEEEeeCCCcEEEEEecCCcceeEEEe-cccceeeeEEEEcCCC
Q psy18231 446 ATGELLEEYKG--HKSGDFRIECCLDS------KDSQIFCGSSDGKIYKWQLVDSSQISTLIH-SVGKAVVNSLCSHPTR 516 (540)
Q Consensus 446 ~~~~~~~~~~~--~~~~v~~~~~~~s~------~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~-~~~~~~v~~l~~s~d~ 516 (540)
.+++.+..+.. +...+..+ +++| +|+..++...+..|++||..+++.+..+.. ..+...+..++++|+|
T Consensus 226 ~~G~~~~~~~~~~~~~~~~~~--~~~pg~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG 303 (329)
T 3fvz_A 226 DTKEFVREIKHASFGRNVFAI--SYIPGFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDG 303 (329)
T ss_dssp TTCCEEEEECCTTTTTCEEEE--EEETTEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTS
T ss_pred CCCcEEEEEeccccCCCccee--eecCCEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCC
Confidence 88887776643 33344444 7777 444444445566999999999998888731 1466779999999999
Q ss_pred cEEEeec-CCeeEEEEcccc
Q psy18231 517 KHIMSAC-GNNVKLWTAEED 535 (540)
Q Consensus 517 ~~l~s~~-d~~i~iw~~~~~ 535 (540)
.++++.. ++.|++|+++..
T Consensus 304 ~lyvad~~~~~I~~~~~~~~ 323 (329)
T 3fvz_A 304 TVYIGDAHTNTVWKFTLTEK 323 (329)
T ss_dssp EEEEEESSSCCEEEEEEEEC
T ss_pred CEEEEECCCCEEEEEeCCcc
Confidence 8888877 999999998754
|
| >3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=99.81 E-value=1.2e-18 Score=168.11 Aligned_cols=283 Identities=10% Similarity=0.083 Sum_probs=172.8
Q ss_pred EEEcCCCCeeEEEeecCCcceeE-----EEEeeCCCeEEEeeC-CC--eEEEEEcCCCceeEeccccCCceeEEEECCCC
Q psy18231 189 KLWNPYRNLLLKTYGGHAHEVND-----ATAACDSSQIASGAS-DK--SVILWEVTTGQPVRRWREHASKVTCVKFNEDS 260 (540)
Q Consensus 189 ~iwd~~~~~~~~~~~~h~~~v~~-----l~~sp~~~~l~s~s~-dg--~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~ 260 (540)
..+|..++..+..+..|...... .+|+|||++|+.++. ++ .|.+||+.+++......++...+....|+||+
T Consensus 13 ~~~~~~~g~~~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg 92 (388)
T 3pe7_A 13 TYQDASTGAQVTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDD 92 (388)
T ss_dssp EEECTTTCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTTS
T ss_pred EEecCCCCcceEEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCCC
Confidence 34688888888888888766665 889999999998887 66 48888999988877777777666678899999
Q ss_pred CEEEEecCCCcEEEEEecCCCCCCcchhhhhHhhhhcCCceeEEEEeecccccccccCceeeEEEeeeecccccceeeee
Q psy18231 261 SVVISGSQDNTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVL 340 (540)
Q Consensus 261 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (540)
+.|+.++.++.|.+||+.+++...+.. .. ...... ....
T Consensus 93 ~~l~~~~~~~~l~~~d~~~g~~~~~~~--~~------~~~~~~---------------------------------~~~~ 131 (388)
T 3pe7_A 93 DALFYVKDGRNLMRVDLATLEENVVYQ--VP------AEWVGY---------------------------------GTWV 131 (388)
T ss_dssp SEEEEEETTTEEEEEETTTCCEEEEEE--CC------TTEEEE---------------------------------EEEE
T ss_pred CEEEEEeCCCeEEEEECCCCcceeeee--ch------hhcccc---------------------------------ccee
Confidence 999999999999999998876311110 00 000000 0000
Q ss_pred eccceeEEEe-ecccceecccccccccccchhhhhhcccccEEEEEecCCeeEeeeCCCeEEEEeCCCCceEEeee-CCc
Q psy18231 341 MSTQHLMVLL-DFLGSTQIGDVTPISIHNSCFQALKEARDSITSVHVSDHEILTASLDCRIRRYDIRTGNLVTDYV-GEP 418 (540)
Q Consensus 341 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~ 418 (540)
.+.++...+. ...+.. ..... ... .+ ........+..|.+||+.+++...... ...
T Consensus 132 ~~~dg~~l~~~~~~~~~----~~~~~---~~~-~~--------------~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~ 189 (388)
T 3pe7_A 132 ANSDCTKLVGIEIRRED----WVPLT---DWK-KF--------------HEFYFTKPCCRLMRVDLKTGESTVILQENQW 189 (388)
T ss_dssp ECTTSSEEEEEEEEGGG----CCCCC---SHH-HH--------------HHHGGGCCCEEEEEEETTTCCEEEEEEESSC
T ss_pred ECCCCCeeccccccCcc----ccccc---ccc-hh--------------hhhhccCCcceEEEEECCCCceEEeecCCcc
Confidence 0111111110 000000 00000 000 00 001123345789999999887654443 356
Q ss_pred eEEEEEec-CCcEEEeecCC------CeEEEEeccccchhhhhccCcCCcceEEEEecCCCCeEEEeeCC-C----cEEE
Q psy18231 419 IVDACFTR-DCQCILTCSTD------ECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSD-G----KIYK 486 (540)
Q Consensus 419 i~~~~~sp-~~~~l~~~~~d------g~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~s~~~~~l~s~s~d-g----~i~i 486 (540)
+..+.|+| ||+.|+....+ ..|.++|...++. ..+..+.........+|+|||+.|+..+.+ + .|++
T Consensus 190 ~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~-~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~ 268 (388)
T 3pe7_A 190 LGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNM-RKVKTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYS 268 (388)
T ss_dssp EEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCC-EESCCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEE
T ss_pred ccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCce-EEeeeCCCCcccccceECCCCCEEEEEecCCCCCcceEEE
Confidence 89999999 99998876653 3788888765543 333333321122334899999987665432 2 3999
Q ss_pred EEecCCcceeEEEeccccee---eeEEEEcCCCcEEEee---------c-CCeeEEEEcccc
Q psy18231 487 WQLVDSSQISTLIHSVGKAV---VNSLCSHPTRKHIMSA---------C-GNNVKLWTAEED 535 (540)
Q Consensus 487 wd~~~~~~~~~~~~~~~~~~---v~~l~~s~d~~~l~s~---------~-d~~i~iw~~~~~ 535 (540)
||+.+++.........+... ...++|+|||+.|+.. . +..|++||++++
T Consensus 269 ~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~ 330 (388)
T 3pe7_A 269 ADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNG 330 (388)
T ss_dssp ECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEETTTT
T ss_pred EecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCC
Confidence 99998875333221121111 2234799999988853 4 678999998764
|
| >2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.79 E-value=2.3e-17 Score=156.39 Aligned_cols=282 Identities=13% Similarity=0.110 Sum_probs=164.1
Q ss_pred cCeEEEEeCCCCCEEEEee---------CCCcEEEEcCCCCeeEEEeecCCcceeEEEEeeCCCeEEEeeCC---C--eE
Q psy18231 165 SGLMHTRFPVDGSYCLTCG---------SDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASD---K--SV 230 (540)
Q Consensus 165 ~~v~~v~~spdg~~lat~~---------~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~d---g--~i 230 (540)
..+...++ ||++++... .++.|.+||+.+++... + ..+..++|+|||++|+.++.+ + .|
T Consensus 15 ~~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~-l----~~~~~~~~SpDg~~la~~~~~~~~~~~~l 87 (347)
T 2gop_A 15 AYLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNARRF-I----ENATMPRISPDGKKIAFMRANEEKKVSEI 87 (347)
T ss_dssp CEEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEEE-E----ESCEEEEECTTSSEEEEEEEETTTTEEEE
T ss_pred EEcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCceEE-c----ccCCCeEECCCCCEEEEEEeccCCCcceE
Confidence 44566777 888887542 26789999998876533 3 568889999999999987754 3 47
Q ss_pred EEEEcCCCceeEeccccCCceeEEEECCCCCEEEEecCCCcEEEEEecCCCCCCcchhhhhHhhhhcCCceeEEEEeecc
Q psy18231 231 ILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKS 310 (540)
Q Consensus 231 ~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (540)
.+||+.+++....... .. +..+.|+|||+.|+.++.+. ..... ... +..+.+.
T Consensus 88 ~~~~~~~g~~~~l~~~-~~-~~~~~wspdg~~l~~~~~~~-------~~~~~-~~~-----------------~~~~~~~ 140 (347)
T 2gop_A 88 WVADLETLSSKKILEA-KN-IRSLEWNEDSRKLLIVGFKR-------REDED-FIF-----------------EDDVPAW 140 (347)
T ss_dssp EEEETTTTEEEEEEEE-SE-EEEEEECTTSSEEEEEEECC-------CC---------------------------CCCC
T ss_pred EEEECCCCceEEEEcC-CC-ccceeECCCCCEEEEEEccC-------CCcCC-cEE-----------------Eccccee
Confidence 8888888776554433 33 99999999999988876431 00000 000 0000000
Q ss_pred cccccccCceeeEEEeeeecccccceeeeeeccceeEEEeecccceecccccccccccchhhhhhcccccEEEEEecC-C
Q psy18231 311 TKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEARDSITSVHVSD-H 389 (540)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~-~ 389 (540)
..+ ..........+.+++..+.... ..+.. . .+..+.|+| .
T Consensus 141 ~~g-----------------------~~~~~~~~~~l~~~d~~~~~~~-------------~~l~~-~-~~~~~~~spdg 182 (347)
T 2gop_A 141 FDD-----------------------LGFFDGEKTTFWIFDTESEEVI-------------EEFEK-P-RFSSGIWHRDK 182 (347)
T ss_dssp --------------------------------CEEEEEEEETTTTEEE-------------EEEEE-E-TTCEEEEETTE
T ss_pred ecC-----------------------cccccCccceEEEEECCCCeEE-------------eeecC-C-CcccccCCCCe
Confidence 000 0000000111222222111100 01111 1 455677777 4
Q ss_pred eeEeeeCC---------CeEEEEeCCCCceEEeeeCCceEEEEEecCCcEEEeecCC--------CeEEEEeccccchhh
Q psy18231 390 EILTASLD---------CRIRRYDIRTGNLVTDYVGEPIVDACFTRDCQCILTCSTD--------ECLRLFDKATGELLE 452 (540)
Q Consensus 390 ~l~~~~~d---------g~i~iwd~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d--------g~i~i~d~~~~~~~~ 452 (540)
+++++..+ ..|.++| +++......+..+. .++|+|++|+.++.+ ..|.+|| +++...
T Consensus 183 ~~~~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~~~~~--~~spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~ 256 (347)
T 2gop_A 183 IVVNVPHREIIPQYFKFWDIYIWE--DGKEEKMFEKVSFY--AVDSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMG 256 (347)
T ss_dssp EEEEEECCCSSCCSSCCEEEEEEE--TTEEEEEEEEESEE--EEEECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEE
T ss_pred EEEEEecccccccccccccEEEeC--CCceEEeccCccee--eECCCCCEEEEEEccccCCccccceEEEEC--CCceEe
Confidence 44444333 2355555 45433222222333 349999998877644 4688888 555444
Q ss_pred hhccCcCCcceEEEEecCCCCeEEEeeCCCcEEEEEecCCcceeEEEecccceeeeEEEEcCCCcEEEeec-CCee-EEE
Q psy18231 453 EYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC-GNNV-KLW 530 (540)
Q Consensus 453 ~~~~~~~~v~~~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~-d~~i-~iw 530 (540)
....+...+.. ...|+ |+ ++++++.++.+++| +.+++. ..+. .+...|.+++|+| .++++++ ++.. .||
T Consensus 257 l~~~~~~~~~~-~~~~s-dg-~~~~~~~~~~~~l~-~~~g~~-~~~~--~~~~~v~~~~~s~--~~~~~~~~~~~~~~l~ 327 (347)
T 2gop_A 257 ILDEVDRGVGQ-AKIKD-GK-VYFTLFEEGSVNLY-IWDGEI-KPIA--KGRHWIMGFDVDE--IVVYLKETATRLRELF 327 (347)
T ss_dssp SSTTCCSEEEE-EEEET-TE-EEEEEEETTEEEEE-EESSSE-EEEE--CSSSEEEEEEESS--SEEEEEECSSSCCEEE
T ss_pred ccccCCcccCC-ccEEc-Cc-EEEEEecCCcEEEE-EcCCce-EEEe--cCCCeEEeeeeeC--cEEEEEcCCCChHHhe
Confidence 44455555543 13788 88 99999999999999 886654 4444 4578899999999 5666665 6554 778
Q ss_pred Ecc
Q psy18231 531 TAE 533 (540)
Q Consensus 531 ~~~ 533 (540)
.++
T Consensus 328 ~~~ 330 (347)
T 2gop_A 328 TWD 330 (347)
T ss_dssp EES
T ss_pred EeC
Confidence 764
|
| >4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ... | Back alignment and structure |
|---|
Probab=99.79 E-value=1.9e-18 Score=180.69 Aligned_cols=236 Identities=6% Similarity=-0.016 Sum_probs=167.4
Q ss_pred CcceeEEEEeeCCCeEEEeeCCCeEEEEEcCCCceeEeccccCCc-----eeEEEECCCCCEEEEecCC---------Cc
Q psy18231 206 AHEVNDATAACDSSQIASGASDKSVILWEVTTGQPVRRWREHASK-----VTCVKFNEDSSVVISGSQD---------NT 271 (540)
Q Consensus 206 ~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~-----v~~~~~~~~~~~l~s~~~d---------g~ 271 (540)
.....++.|+||+++++++ |++|++||+.+++....+.+|... ...++|||||++|+.++.+ +.
T Consensus 16 ~~~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~ 93 (740)
T 4a5s_A 16 RLKLYSLRWISDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTAS 93 (740)
T ss_dssp CCCCCCEEECSSSEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEE
T ss_pred cccccccEECCCCcEEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceE
Confidence 3446689999999988886 899999999999988777776543 2448899999999998876 56
Q ss_pred EEEEEecCCCCCCcchhhhhHhhhhcCCceeEEEEeecccccccccCceeeEEEeeeecccccceeeeeeccceeEEEee
Q psy18231 272 VMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLD 351 (540)
Q Consensus 272 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (540)
+.+||+.+++..
T Consensus 94 ~~~~d~~~~~~~-------------------------------------------------------------------- 105 (740)
T 4a5s_A 94 YDIYDLNKRQLI-------------------------------------------------------------------- 105 (740)
T ss_dssp EEEEETTTTEEC--------------------------------------------------------------------
T ss_pred EEEEECCCCcEE--------------------------------------------------------------------
Confidence 679998877521
Q ss_pred cccceecccccccccccchhhhhhcccccEEEEEecC--CeeEeeeCCCeEEEEeCCCCceEEeee-CC--ce-------
Q psy18231 352 FLGSTQIGDVTPISIHNSCFQALKEARDSITSVHVSD--HEILTASLDCRIRRYDIRTGNLVTDYV-GE--PI------- 419 (540)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~--~i------- 419 (540)
.+..+...+...+|+| +.|+.+ .++.|++||+.+++..+... ++ .+
T Consensus 106 ---------------------~l~~~~~~~~~~~~SPdG~~la~~-~~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~ 163 (740)
T 4a5s_A 106 ---------------------TEERIPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDW 163 (740)
T ss_dssp ---------------------CSSCCCTTEEEEEECSSTTCEEEE-ETTEEEEESSTTSCCEECCSCCBTTTEEESBCCH
T ss_pred ---------------------EcccCCCcceeeEECCCCCEEEEE-ECCeEEEEECCCCceEEEcCCCCccceecCcccc
Confidence 2334556788999999 666666 57899999999887554322 21 12
Q ss_pred ----------EEEEEecCCcEEEeecCCC------------------------------------eEEEEeccc---cch
Q psy18231 420 ----------VDACFTRDCQCILTCSTDE------------------------------------CLRLFDKAT---GEL 450 (540)
Q Consensus 420 ----------~~~~~sp~~~~l~~~~~dg------------------------------------~i~i~d~~~---~~~ 450 (540)
..+.|||||+.|+..+.|. .|++||+.+ ++.
T Consensus 164 v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~ 243 (740)
T 4a5s_A 164 VYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTN 243 (740)
T ss_dssp HHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSC
T ss_pred cccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCc
Confidence 3489999999998875321 588899888 631
Q ss_pred --hhhhc------cCcCCcceEEEEecCCCCeEEEeeC----CCcEEEEEecCCc------ceeEEEecccceeee----
Q psy18231 451 --LEEYK------GHKSGDFRIECCLDSKDSQIFCGSS----DGKIYKWQLVDSS------QISTLIHSVGKAVVN---- 508 (540)
Q Consensus 451 --~~~~~------~~~~~v~~~~~~~s~~~~~l~s~s~----dg~i~iwd~~~~~------~~~~~~~~~~~~~v~---- 508 (540)
...+. +|...+..+ +|+|||+.++.... +..|++||+.+++ .+..+....|...|.
T Consensus 244 ~~~~~l~~~~~~~~~~~~~~~~--~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~ 321 (740)
T 4a5s_A 244 ATSIQITAPASMLIGDHYLCDV--TWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRP 321 (740)
T ss_dssp CCEEEECCCHHHHTSCEEEEEE--EEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSC
T ss_pred ceEEEecCCccCCCCCeEEEEE--EEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcC
Confidence 12222 255555555 89999997665532 3479999999987 223332125665555
Q ss_pred -EEEEcCCCcEEE-eec--CC--eeEEEEcccc
Q psy18231 509 -SLCSHPTRKHIM-SAC--GN--NVKLWTAEED 535 (540)
Q Consensus 509 -~l~~s~d~~~l~-s~~--d~--~i~iw~~~~~ 535 (540)
.++|+|||+.|+ ..+ +| .|.+|+++++
T Consensus 322 ~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~ 354 (740)
T 4a5s_A 322 SEPHFTLDGNSFYKIISNEEGYRHICYFQIDKK 354 (740)
T ss_dssp CCCEECTTSSEEEEEEECTTSCEEEEEEETTCS
T ss_pred CCceEcCCCCEEEEEEEcCCCceEEEEEECCCC
Confidence 789999999877 554 44 6888887654
|
| >3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=99.76 E-value=4.4e-17 Score=157.49 Aligned_cols=251 Identities=10% Similarity=-0.032 Sum_probs=164.3
Q ss_pred ceeeeeccccccee--eeeecC-eEEEEeCCCCCEEEEeeCCCcEEEEcCCCCeeEEEeecCCcceeE------------
Q psy18231 147 WSIRVYRPLTVNRE--LFVLSG-LMHTRFPVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVND------------ 211 (540)
Q Consensus 147 ~~i~~~~~~~~~~~--~~h~~~-v~~v~~spdg~~lat~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~------------ 211 (540)
..|.+|+..+.... ..+... ...+.|+|||++|+.++.++.|.+||+.+++.......+......
T Consensus 60 ~~l~~~d~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~ 139 (396)
T 3c5m_A 60 RNYYLLNLETQQAVQLTEGKGDNTFGGFISTDERAFFYVKNELNLMKVDLETLEEQVIYTVDEEWKGYGTWVANSDCTKL 139 (396)
T ss_dssp CEEEEEETTTTEEEECCCSSCBCTTTCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEE
T ss_pred ceEEEEECCCCcEEEeecCCCCccccceECCCCCEEEEEEcCCcEEEEECCCCCcEEEEecccccCCCCCEEEeccCCcc
Confidence 45677776554322 112222 333789999999999998999999999988766655544443222
Q ss_pred -------EEEeeCCCeEEEe-----eCCCeEEEEEcCCCceeEeccccCCceeEEEECC-CCCEEEEecCC------CcE
Q psy18231 212 -------ATAACDSSQIASG-----ASDKSVILWEVTTGQPVRRWREHASKVTCVKFNE-DSSVVISGSQD------NTV 272 (540)
Q Consensus 212 -------l~~sp~~~~l~s~-----s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~~~d------g~i 272 (540)
+.|+|+++.++.. ..+..|.+||+.+++..... .+...+..+.|+| +++.|+..+.+ ..|
T Consensus 140 ~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~-~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l 218 (396)
T 3c5m_A 140 VGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVIH-QDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARM 218 (396)
T ss_dssp EEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEE-EESSCEEEEEEETTEEEEEEEEECSCSSSCSCCC
T ss_pred ccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCcEEeec-cCCcccccceECCCCCCEEEEEecCCCCCCCceE
Confidence 3456777766554 35678999999888765544 5677899999999 78877766543 357
Q ss_pred EEEEecCCCCCCcchhhhhHhhhhcCCceeEEEEeecccccccccCceeeEEEeeeecccccceeeeeeccceeEEEeec
Q psy18231 273 MMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDF 352 (540)
Q Consensus 273 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (540)
.+||+..++...+
T Consensus 219 ~~~d~~~~~~~~l------------------------------------------------------------------- 231 (396)
T 3c5m_A 219 WLVNEDGSNVRKI------------------------------------------------------------------- 231 (396)
T ss_dssp EEEETTSCCCEES-------------------------------------------------------------------
T ss_pred EEEECCCCceeEe-------------------------------------------------------------------
Confidence 7777655431000
Q ss_pred ccceecccccccccccchhhhhhcc-cccEEEEEecC--CeeEeeeCC-----CeEEEEeCCCCceEEeeeCCceEEEEE
Q psy18231 353 LGSTQIGDVTPISIHNSCFQALKEA-RDSITSVHVSD--HEILTASLD-----CRIRRYDIRTGNLVTDYVGEPIVDACF 424 (540)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~l~~~~--~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~i~~~~~ 424 (540)
.... ...+..+.|+| +.|+..+.+ +.|++||+.+++........... +.|
T Consensus 232 ---------------------~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~-~~~ 289 (396)
T 3c5m_A 232 ---------------------KEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMVMPPCS-HLM 289 (396)
T ss_dssp ---------------------SCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEECCSEE-EEE
T ss_pred ---------------------eccCCCccccceEECCCCCEEEEEecCCCCccceEEEEECCCCCeEEeeeCCCCC-CCc
Confidence 0111 23467788988 556665443 45999999988754433333344 899
Q ss_pred ec-CCcEEEeec----------------CCCeEEEEeccccchhhhhccCcCC-----------cceEEEEecCCCCeEE
Q psy18231 425 TR-DCQCILTCS----------------TDECLRLFDKATGELLEEYKGHKSG-----------DFRIECCLDSKDSQIF 476 (540)
Q Consensus 425 sp-~~~~l~~~~----------------~dg~i~i~d~~~~~~~~~~~~~~~~-----------v~~~~~~~s~~~~~l~ 476 (540)
+| +|+++++++ .+..|++||+.+++. ..+..+... +... +|+|||+.|+
T Consensus 290 s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~--~~s~dg~~l~ 366 (396)
T 3c5m_A 290 SNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSA-QKLCKHSTSWDVLDGDRQITHPHP--SFTPNDDGVL 366 (396)
T ss_dssp ECSSSSEEEEEECCC----------CCCCCCEEEEEETTTTBC-CEEEECCCCCCCBTTBSSTTCCCC--EECTTSSEEE
T ss_pred cCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCce-EEccCCCCccccccccccCCCCCc--eEccCCCeEE
Confidence 99 999888754 347899999987764 344444431 3334 7999999888
Q ss_pred EeeC-CCcEEEEEec
Q psy18231 477 CGSS-DGKIYKWQLV 490 (540)
Q Consensus 477 s~s~-dg~i~iwd~~ 490 (540)
.++. ++...+|.+.
T Consensus 367 ~~s~~~~~~~l~~~~ 381 (396)
T 3c5m_A 367 FTSDFEGVPAIYIAD 381 (396)
T ss_dssp EEECTTSSCEEEEEE
T ss_pred EEecCCCCceEEEEE
Confidence 7664 5555555443
|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A | Back alignment and structure |
|---|
Probab=99.76 E-value=1.3e-15 Score=143.37 Aligned_cols=250 Identities=12% Similarity=0.062 Sum_probs=171.1
Q ss_pred hcccccceeeeecccccceeeeeecCeEEEEeCCCCCEEEEeeCCCcEEEEcCCCCeeEEEeecCCcceeEEEEeeCCCe
Q psy18231 141 YELPKEWSIRVYRPLTVNRELFVLSGLMHTRFPVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQ 220 (540)
Q Consensus 141 ~~~~~~~~i~~~~~~~~~~~~~h~~~v~~v~~spdg~~lat~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~ 220 (540)
..+..+..++.|..........+...+.+++|+|+|++++++..++.|.+||..+++.......+...+.+++++|++++
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~dg~l 100 (333)
T 2dg1_A 21 VPIISESELQTITAEPWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRL 100 (333)
T ss_dssp SCCCCGGGSCEEECEEEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCE
T ss_pred eEEeecccCcccccceeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEeeCCCCCcceEEECCCCcE
Confidence 34466777888844433344456677899999999998888888999999999888766555456788999999999998
Q ss_pred EEEeeCC----CeEEEEEcCCCceeEecc--ccCCceeEEEECCCCCEEEEecC------CCcEEEEEecCCCCCCcchh
Q psy18231 221 IASGASD----KSVILWEVTTGQPVRRWR--EHASKVTCVKFNEDSSVVISGSQ------DNTVMMWDVKSRSHHPIQVR 288 (540)
Q Consensus 221 l~s~s~d----g~i~iwd~~~~~~~~~~~--~h~~~v~~~~~~~~~~~l~s~~~------dg~i~iwd~~~~~~~~~~~~ 288 (540)
+++...+ +.|.+||..+++....+. .+...+..++++|+++++++... .+.|..+|..+++. .
T Consensus 101 ~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~---~-- 175 (333)
T 2dg1_A 101 FVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTV---T-- 175 (333)
T ss_dssp EEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCE---E--
T ss_pred EEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEE---E--
Confidence 8887766 689999998876543332 34567899999999987776653 23344443332220 0
Q ss_pred hhhHhhhhcCCceeEEEEeecccccccccCceeeEEEeeeecccccceeeeeeccceeEEEeecccceeccccccccccc
Q psy18231 289 CLNEALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHN 368 (540)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (540)
T Consensus 176 -------------------------------------------------------------------------------- 175 (333)
T 2dg1_A 176 -------------------------------------------------------------------------------- 175 (333)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred chhhhhhcccccEEEEEecC--Cee-EeeeCCCeEEEEeCCC-CceEEe--------eeC-CceEEEEEecCCcEEEeec
Q psy18231 369 SCFQALKEARDSITSVHVSD--HEI-LTASLDCRIRRYDIRT-GNLVTD--------YVG-EPIVDACFTRDCQCILTCS 435 (540)
Q Consensus 369 ~~~~~~~~~~~~v~~l~~~~--~~l-~~~~~dg~i~iwd~~~-~~~~~~--------~~~-~~i~~~~~sp~~~~l~~~~ 435 (540)
.+......+..+++++ +.+ ++.+.++.|.+||+++ +..+.. +.+ ..+..++++++|+++++..
T Consensus 176 ----~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~ 251 (333)
T 2dg1_A 176 ----PIIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMY 251 (333)
T ss_dssp ----EEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEE
T ss_pred ----EeecCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCCCCCCceEECCCCCEEEEEc
Confidence 0001122356788887 344 4445678999999964 332211 112 3678899999999888877
Q ss_pred CCCeEEEEeccccchhhhhccCcC------CcceEEEEecCCCCeEEEeeCCC
Q psy18231 436 TDECLRLFDKATGELLEEYKGHKS------GDFRIECCLDSKDSQIFCGSSDG 482 (540)
Q Consensus 436 ~dg~i~i~d~~~~~~~~~~~~~~~------~v~~~~~~~s~~~~~l~s~s~dg 482 (540)
.++.|.+||. +++.+..+..+.. .+..+ +|++|++.|+.++.++
T Consensus 252 ~~~~v~~~d~-~g~~~~~~~~~~~~~g~~~~~~~~--~~~~dg~~L~v~~~~g 301 (333)
T 2dg1_A 252 GQGRVLVFNK-RGYPIGQILIPGRDEGHMLRSTHP--QFIPGTNQLIICSNDI 301 (333)
T ss_dssp TTTEEEEECT-TSCEEEEEECTTGGGTCSCBCCEE--EECTTSCEEEEEEECG
T ss_pred CCCEEEEECC-CCCEEEEEEcCCCccccccCcceE--EECCCCCEEEEEeCcc
Confidence 7899999998 4655555543322 45555 7889987777666553
|
| >1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=5.1e-15 Score=147.50 Aligned_cols=308 Identities=12% Similarity=0.129 Sum_probs=214.3
Q ss_pred hhhhcccccceeeeecccccce--eeeeecCeEEEEeCCCCCEEEEeeCCCcEEEEcCC--CCeeEEEeecCCcceeEEE
Q psy18231 138 RILYELPKEWSIRVYRPLTVNR--ELFVLSGLMHTRFPVDGSYCLTCGSDKKIKLWNPY--RNLLLKTYGGHAHEVNDAT 213 (540)
Q Consensus 138 ~~~~~~~~~~~i~~~~~~~~~~--~~~h~~~v~~v~~spdg~~lat~~~dg~i~iwd~~--~~~~~~~~~~h~~~v~~l~ 213 (540)
.++.....++.|.+++..+... .+.....+..+.|||||+++++++.|+.|.+||+. +++.+.++... .....++
T Consensus 168 ~~~V~~~~~~~V~viD~~t~~v~~~i~~g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G-~~P~~ia 246 (567)
T 1qks_A 168 LFSVTLRDAGQIALIDGSTYEIKTVLDTGYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIG-SEARSIE 246 (567)
T ss_dssp EEEEEETTTTEEEEEETTTCCEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECC-SEEEEEE
T ss_pred eEEEEeCCCCeEEEEECCCCeEEEEEeCCCCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecC-CCCceeE
Confidence 3444556778899999887543 23344567799999999999999999999999995 88888888753 3467899
Q ss_pred Ee----eCCCeEEEeeC-CCeEEEEEcCCCceeEeccc----------cCC-ceeEEEECCCCC-EEEEecCCCcEEEEE
Q psy18231 214 AA----CDSSQIASGAS-DKSVILWEVTTGQPVRRWRE----------HAS-KVTCVKFNEDSS-VVISGSQDNTVMMWD 276 (540)
Q Consensus 214 ~s----p~~~~l~s~s~-dg~i~iwd~~~~~~~~~~~~----------h~~-~v~~~~~~~~~~-~l~s~~~dg~i~iwd 276 (540)
|+ |||+++++++. +++|.|+|..+.+.+..+.. |.. .+..+..++++. +++....+|.|.++|
T Consensus 247 ~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd 326 (567)
T 1qks_A 247 TSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVD 326 (567)
T ss_dssp ECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEE
T ss_pred EccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEe
Confidence 99 69999887765 58999999999988877542 222 678888888765 455556679999999
Q ss_pred ecCCCCCCcchhhhhHhhhhcCCceeEEEEeecccccccccCceeeEEEeeeecccccceeeeeeccceeEEEeecccce
Q psy18231 277 VKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGST 356 (540)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (540)
..+.+...+.
T Consensus 327 ~~~~~~~~v~---------------------------------------------------------------------- 336 (567)
T 1qks_A 327 YTDLNNLKTT---------------------------------------------------------------------- 336 (567)
T ss_dssp TTCSSEEEEE----------------------------------------------------------------------
T ss_pred cCCCccceee----------------------------------------------------------------------
Confidence 8654310000
Q ss_pred ecccccccccccchhhhhhcccccEEEEEecC--CeeEee-eCCCeEEEEeCCCCceEEeeeC-----CceEEEE-EecC
Q psy18231 357 QIGDVTPISIHNSCFQALKEARDSITSVHVSD--HEILTA-SLDCRIRRYDIRTGNLVTDYVG-----EPIVDAC-FTRD 427 (540)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~--~~l~~~-~~dg~i~iwd~~~~~~~~~~~~-----~~i~~~~-~sp~ 427 (540)
. .........+.|++ ++++++ ..++.|.++|+.+++.+..+.- ++-..+. ++|+
T Consensus 337 ----------------~-i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~~~p~ 399 (567)
T 1qks_A 337 ----------------E-ISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPT 399 (567)
T ss_dssp ----------------E-EECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEETT
T ss_pred ----------------e-eeccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCccceeeECCC
Confidence 0 01112344667877 555554 4688999999999988766643 2212233 5887
Q ss_pred Cc-EEEeec-CCCeEEEEeccc-------cchhhhhccCcCCcceEEEEecCCCCeEEEeeC-------CCcEEEEEecC
Q psy18231 428 CQ-CILTCS-TDECLRLFDKAT-------GELLEEYKGHKSGDFRIECCLDSKDSQIFCGSS-------DGKIYKWQLVD 491 (540)
Q Consensus 428 ~~-~l~~~~-~dg~i~i~d~~~-------~~~~~~~~~~~~~v~~~~~~~s~~~~~l~s~s~-------dg~i~iwd~~~ 491 (540)
+. ..+++. .++.|.++|..+ .+.++++......-..+ ..+|++++|.+... .++|.++|+.+
T Consensus 400 ~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~~i--~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~ 477 (567)
T 1qks_A 400 FGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFI--KTHPNSQYLYVDATLNPEAEISGSVAVFDIKA 477 (567)
T ss_dssp TEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCE--ECCTTCSEEEEECTTCSSHHHHTCEEEEEGGG
T ss_pred CCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCCCCCEEE--EeCCCCCeEEEecCCCCCcccCceEEEEECCc
Confidence 54 444443 468999999987 45666666543322234 68999999888663 45999999987
Q ss_pred C-----cce-eEEEe------cccceeeeEEEEcCCCcEEEee--c----CCeeEEEEcccc
Q psy18231 492 S-----SQI-STLIH------SVGKAVVNSLCSHPTRKHIMSA--C----GNNVKLWTAEED 535 (540)
Q Consensus 492 ~-----~~~-~~~~~------~~~~~~v~~l~~s~d~~~l~s~--~----d~~i~iw~~~~~ 535 (540)
. ... ..+.. ......+..+.|+|+|+++..+ + ++.|.++|.++.
T Consensus 478 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~s~~~~~~~~~~i~v~D~~t~ 539 (567)
T 1qks_A 478 MTGDGSDPEFKTLPIAEWAGITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDKTL 539 (567)
T ss_dssp CCCSSSCCCEEEECHHHHHTCCSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEETTTT
T ss_pred ccccccCCCcEEeccccccccCCCCcceEeeeECCCCCEEEEEeecCCCCCCcEEEEECCCc
Confidence 7 222 33321 0124578999999999887765 2 589999998764
|
| >2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=5.2e-16 Score=161.58 Aligned_cols=273 Identities=11% Similarity=0.067 Sum_probs=181.6
Q ss_pred CCCCEEEEeeCC-----CcEEEEcCCCCeeEEEe------ecCCcceeEEEEeeCCCeEEEeeCCC-----eEEEEEcCC
Q psy18231 174 VDGSYCLTCGSD-----KKIKLWNPYRNLLLKTY------GGHAHEVNDATAACDSSQIASGASDK-----SVILWEVTT 237 (540)
Q Consensus 174 pdg~~lat~~~d-----g~i~iwd~~~~~~~~~~------~~h~~~v~~l~~sp~~~~l~s~s~dg-----~i~iwd~~~ 237 (540)
|||++++-...+ +.+.+.+...++....+ .+|...+..++|||||++||.++.++ +|++||+.+
T Consensus 81 ~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~t 160 (710)
T 2xdw_A 81 KKGKRYFYFYNTGLQNQRVLYVQDSLEGEARVFLDPNILSDDGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDG 160 (710)
T ss_dssp EETTEEEEEEECSSCSSCEEEEESSTTSCCEEEECGGGGCTTSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTT
T ss_pred EECCEEEEEEEcCCceEEEEEEEcCCCCCcEEEECHHHhccCCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCC
Confidence 788887754322 24455555445433222 13445688999999999998776543 899999999
Q ss_pred CceeEeccccCCceeEEEECCCCCEEEEecCCCc----------------EEEEEecCCCCCCcchhhhhHhhhhcCCce
Q psy18231 238 GQPVRRWREHASKVTCVKFNEDSSVVISGSQDNT----------------VMMWDVKSRSHHPIQVRCLNEALKEARDSI 301 (540)
Q Consensus 238 ~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~----------------i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (540)
++.......+ ..+..++|+|||+.|+.++.++. |++|++.++......
T Consensus 161 g~~~~~~~~~-~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~--------------- 224 (710)
T 2xdw_A 161 AKELPDVLER-VKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDIL--------------- 224 (710)
T ss_dssp TEEEEEEEEE-ECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEE---------------
T ss_pred CCCCcccccC-cccceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceE---------------
Confidence 9876643222 23678999999999999887765 777777655310000
Q ss_pred eEEEEeecccccccccCceeeEEEeeeecccccceeeeeeccceeEEEeecccceecccccccccccchhhhhhcccccE
Q psy18231 302 TSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEARDSI 381 (540)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 381 (540)
+.....+...+
T Consensus 225 ---------------------------------------------------------------------v~~~~~~~~~~ 235 (710)
T 2xdw_A 225 ---------------------------------------------------------------------CAEFPDEPKWM 235 (710)
T ss_dssp ---------------------------------------------------------------------EECCTTCTTCE
T ss_pred ---------------------------------------------------------------------EeccCCCCeEE
Confidence 00111234456
Q ss_pred EEEEecC--CeeEeeeC-----CCeEEEEeCCC------Cc-eEEeeeC--CceEEEEEecCCcEEEeecCC----CeEE
Q psy18231 382 TSVHVSD--HEILTASL-----DCRIRRYDIRT------GN-LVTDYVG--EPIVDACFTRDCQCILTCSTD----ECLR 441 (540)
Q Consensus 382 ~~l~~~~--~~l~~~~~-----dg~i~iwd~~~------~~-~~~~~~~--~~i~~~~~sp~~~~l~~~~~d----g~i~ 441 (540)
..+.|+| ++|+..+. +..|++||+.+ +. ....+.. ..+.. .|+|+|+.|+..+.. +.|.
T Consensus 236 ~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~ 314 (710)
T 2xdw_A 236 GGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLI 314 (710)
T ss_dssp EEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEE
T ss_pred EEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEE
Confidence 7788888 66666554 67899999986 42 2333432 23333 588999887766543 4699
Q ss_pred EEeccccch--hhhhccCcC--CcceEEEEecCCCCeEEEeeCCCc--EEEEEecCCcceeEEEecccceeeeEEEEcCC
Q psy18231 442 LFDKATGEL--LEEYKGHKS--GDFRIECCLDSKDSQIFCGSSDGK--IYKWQLVDSSQISTLIHSVGKAVVNSLCSHPT 515 (540)
Q Consensus 442 i~d~~~~~~--~~~~~~~~~--~v~~~~~~~s~~~~~l~s~s~dg~--i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d 515 (540)
+||+.+++. ...+..|.. .+..+ ++++++.++++...|+. |++|++.+++.+..+. .+.+.+..+.++|+
T Consensus 315 ~~d~~~~~~~~~~~l~~~~~~~~~~~~--~~~~~~~lv~~~~~~g~~~l~~~~~~~g~~~~~l~--~~~~~v~~~~~s~d 390 (710)
T 2xdw_A 315 NIDFTDPEESKWKVLVPEHEKDVLEWV--ACVRSNFLVLCYLHDVKNTLQLHDLATGALLKIFP--LEVGSVVGYSGQKK 390 (710)
T ss_dssp EEETTSCCGGGCEEEECCCSSCEEEEE--EEETTTEEEEEEEETTEEEEEEEETTTCCEEEEEC--CCSSEEEEEECCTT
T ss_pred EEeCCCCCcccceeccCCCCCCeEEEE--EEEcCCEEEEEEEECCEEEEEEEECCCCCEEEecC--CCCceEEEEecCCC
Confidence 999987642 345555544 33334 67777788888888885 5666766788777777 56788999999999
Q ss_pred CcEEEee--c---CCeeEEEEccccc
Q psy18231 516 RKHIMSA--C---GNNVKLWTAEEDY 536 (540)
Q Consensus 516 ~~~l~s~--~---d~~i~iw~~~~~~ 536 (540)
++.++.. + .++|.+||+.++.
T Consensus 391 ~~~l~~~~ss~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 391 DTEIFYQFTSFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp CSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred CCEEEEEEeCCCCCCEEEEEECCCCc
Confidence 9766532 2 5789999987653
|
| >3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.74 E-value=1.9e-15 Score=139.69 Aligned_cols=244 Identities=8% Similarity=0.011 Sum_probs=167.7
Q ss_pred CeeEEEeecCCcceeEEEEeeCCC-eEEEeeCCCeEEEEEcCCCceeEeccccCCceeEEEECCCCCEEEEecCCCcEEE
Q psy18231 196 NLLLKTYGGHAHEVNDATAACDSS-QIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMM 274 (540)
Q Consensus 196 ~~~~~~~~~h~~~v~~l~~sp~~~-~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~i 274 (540)
+..+..+..+.....+++|+|+++ +++++..++.|..||..++ ...+..+...+.+++++++|+++++...++.|.+
T Consensus 17 ~~~~~~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~ 94 (296)
T 3e5z_A 17 GAEARRLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLER 94 (296)
T ss_dssp TCCCEEEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEEESSCSSEEEEEECTTCCEEEEETTTTEEEE
T ss_pred CCcEEEEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEEECCCCCcceeeECCCCcEEEEecCCCeEEE
Confidence 344455555667788999999998 7888888999999999877 5666677788999999999998888777789999
Q ss_pred EEecCCCCCCcchhhhhHhhhhcCCceeEEEEeecccccccccCceeeEEEeeeecccccceeeeeeccceeEEEeeccc
Q psy18231 275 WDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLG 354 (540)
Q Consensus 275 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (540)
||..+++...... .
T Consensus 95 ~d~~~g~~~~~~~---------------------------------------------------------------~--- 108 (296)
T 3e5z_A 95 QREPGGEWESIAD---------------------------------------------------------------S--- 108 (296)
T ss_dssp ECSTTCCEEEEEC---------------------------------------------------------------E---
T ss_pred EcCCCCcEEEEee---------------------------------------------------------------c---
Confidence 9987665210000 0
Q ss_pred ceecccccccccccchhhhhhcccccEEEEEecC--CeeEe----ee-------------CCCeEEEEeCCCCceEEeee
Q psy18231 355 STQIGDVTPISIHNSCFQALKEARDSITSVHVSD--HEILT----AS-------------LDCRIRRYDIRTGNLVTDYV 415 (540)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~--~~l~~----~~-------------~dg~i~iwd~~~~~~~~~~~ 415 (540)
........+..+++++ +++++ ++ ..+.|..++.. ++......
T Consensus 109 ------------------~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~ 169 (296)
T 3e5z_A 109 ------------------FEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTLSAPIR 169 (296)
T ss_dssp ------------------ETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCEEEEEC
T ss_pred ------------------cCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CCEEEeec
Confidence 0000112344566666 34443 22 13466666665 44333222
Q ss_pred C-CceEEEEEecCCcEEEeecCCCeEEEEecc-ccch---hhhhccCcCCcceEEEEecCCCCeEEEeeCCCcEEEEEec
Q psy18231 416 G-EPIVDACFTRDCQCILTCSTDECLRLFDKA-TGEL---LEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLV 490 (540)
Q Consensus 416 ~-~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~-~~~~---~~~~~~~~~~v~~~~~~~s~~~~~l~s~s~dg~i~iwd~~ 490 (540)
. .....++|+|+++.+++.+.++.|++||+. +++. ...+..+......+ +++++|+++++. ++.|.+||..
T Consensus 170 ~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i--~~d~~G~l~v~~--~~~v~~~~~~ 245 (296)
T 3e5z_A 170 DRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGL--RVDAGGLIWASA--GDGVHVLTPD 245 (296)
T ss_dssp CCSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSE--EEBTTSCEEEEE--TTEEEEECTT
T ss_pred CCCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeE--EECCCCCEEEEc--CCeEEEECCC
Confidence 2 457899999999998777888999999986 4443 22222233444556 899999876666 7899999965
Q ss_pred CCcceeEEEecccceeeeEEEE-cCCCcEEEeecCCeeEEEEccc
Q psy18231 491 DSSQISTLIHSVGKAVVNSLCS-HPTRKHIMSACGNNVKLWTAEE 534 (540)
Q Consensus 491 ~~~~~~~~~~~~~~~~v~~l~~-s~d~~~l~s~~d~~i~iw~~~~ 534 (540)
++.+..+. .+.. +++++| +|+++.|++++.+.+.-++.++
T Consensus 246 -g~~~~~~~--~~~~-~~~~~f~~~d~~~L~v~t~~~l~~~~~~~ 286 (296)
T 3e5z_A 246 -GDELGRVL--TPQT-TSNLCFGGPEGRTLYMTVSTEFWSIETNV 286 (296)
T ss_dssp -SCEEEEEE--CSSC-CCEEEEESTTSCEEEEEETTEEEEEECSC
T ss_pred -CCEEEEEE--CCCC-ceeEEEECCCCCEEEEEcCCeEEEEEccc
Confidence 88888777 5666 999999 6899988888844444444443
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
Probab=99.74 E-value=4.1e-16 Score=146.09 Aligned_cols=261 Identities=10% Similarity=0.069 Sum_probs=182.7
Q ss_pred CCCcEEEEcCCCCeeEEEee------cCCcceeEEEEeeCCCeEEEeeCCCeEEEEEcCCCceeEeccccCCceeEEEEC
Q psy18231 184 SDKKIKLWNPYRNLLLKTYG------GHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFN 257 (540)
Q Consensus 184 ~dg~i~iwd~~~~~~~~~~~------~h~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~ 257 (540)
.+++|.+||.++++....+. ........+.+. +++.+++...++.|.+||..+++.+..+. .......++++
T Consensus 15 ~~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~i~-~~~~p~~i~~~ 92 (328)
T 3dsm_A 15 SNATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGRIT-GFTSPRYIHFL 92 (328)
T ss_dssp CCBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEEEE-CCSSEEEEEEE
T ss_pred CCceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEEcC-CCCCCcEEEEe
Confidence 37899999999998765441 112345677774 55666667778999999999999988874 45678899998
Q ss_pred CCCCEEEEecCCCcEEEEEecCCCCCCcchhhhhHhhhhcCCceeEEEEeecccccccccCceeeEEEeeeeccccccee
Q psy18231 258 EDSSVVISGSQDNTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLS 337 (540)
Q Consensus 258 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (540)
++++..++...++.|.+||+.+++.....
T Consensus 93 ~~g~lyv~~~~~~~v~~iD~~t~~~~~~i--------------------------------------------------- 121 (328)
T 3dsm_A 93 SDEKAYVTQIWDYRIFIINPKTYEITGYI--------------------------------------------------- 121 (328)
T ss_dssp ETTEEEEEEBSCSEEEEEETTTTEEEEEE---------------------------------------------------
T ss_pred CCCeEEEEECCCCeEEEEECCCCeEEEEE---------------------------------------------------
Confidence 88855444447899999998876520000
Q ss_pred eeeeccceeEEEeecccceecccccccccccchhhhhhcccccEEEEEecCCeeEeee--CCCeEEEEeCCCCceEEeee
Q psy18231 338 GVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEARDSITSVHVSDHEILTAS--LDCRIRRYDIRTGNLVTDYV 415 (540)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~ 415 (540)
. .....+.......+++..+.++++. .++.|.++|+.+++.+..+.
T Consensus 122 -------------~-------------------~g~~~~~~~~p~~i~~~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~ 169 (328)
T 3dsm_A 122 -------------E-------------------CPDMDMESGSTEQMVQYGKYVYVNCWSYQNRILKIDTETDKVVDELT 169 (328)
T ss_dssp -------------E-------------------CTTCCTTTCBCCCEEEETTEEEEEECTTCCEEEEEETTTTEEEEEEE
T ss_pred -------------E-------------------cCCccccCCCcceEEEECCEEEEEcCCCCCEEEEEECCCCeEEEEEE
Confidence 0 0000000112234445555555554 48899999999999887776
Q ss_pred C-CceEEEEEecCCcEEEeecCC----------CeEEEEeccccchhhhhccCc-CCcceEEEEecCCCCeEEEeeCCCc
Q psy18231 416 G-EPIVDACFTRDCQCILTCSTD----------ECLRLFDKATGELLEEYKGHK-SGDFRIECCLDSKDSQIFCGSSDGK 483 (540)
Q Consensus 416 ~-~~i~~~~~sp~~~~l~~~~~d----------g~i~i~d~~~~~~~~~~~~~~-~~v~~~~~~~s~~~~~l~s~s~dg~ 483 (540)
. .....++++|+|++++++..+ +.|.++|..+++....+.... .....+ +++|++++|+++.. .
T Consensus 170 ~g~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~l--a~~~d~~~lyv~~~--~ 245 (328)
T 3dsm_A 170 IGIQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEV--QLNGTRDTLYWINN--D 245 (328)
T ss_dssp CSSCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEE--EECTTSCEEEEESS--S
T ss_pred cCCCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeE--EEecCCCEEEEEcc--E
Confidence 3 456789999999988777655 789999999888776664322 234445 89999999888765 8
Q ss_pred EEEEEecCCcceeEEEecccceeeeEEEEcC-CCcEEEee----c-CCeeEEEEcc
Q psy18231 484 IYKWQLVDSSQISTLIHSVGKAVVNSLCSHP-TRKHIMSA----C-GNNVKLWTAE 533 (540)
Q Consensus 484 i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~-d~~~l~s~----~-d~~i~iw~~~ 533 (540)
|.+||..+++.........+......++++| ++.+.++. . ++.|.+|+.+
T Consensus 246 v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~ 301 (328)
T 3dsm_A 246 IWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ 301 (328)
T ss_dssp EEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT
T ss_pred EEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC
Confidence 9999998887642111112245688999999 56677776 6 8899999987
|
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A | Back alignment and structure |
|---|
Probab=99.73 E-value=9.1e-17 Score=166.34 Aligned_cols=270 Identities=11% Similarity=0.028 Sum_probs=173.2
Q ss_pred EEEeC--CCCCE-EEEeeC-CCcEEEEcCC--CCeeEEEeec-----CCcceeEEEEeeCCCeEEEeeCC----------
Q psy18231 169 HTRFP--VDGSY-CLTCGS-DKKIKLWNPY--RNLLLKTYGG-----HAHEVNDATAACDSSQIASGASD---------- 227 (540)
Q Consensus 169 ~v~~s--pdg~~-lat~~~-dg~i~iwd~~--~~~~~~~~~~-----h~~~v~~l~~sp~~~~l~s~s~d---------- 227 (540)
...|+ |||++ |+.++. +..|.+|++. .......+.. |...+.+++|+|||+.|++++.+
T Consensus 81 ~~~~~~SPDg~~~la~~~~~~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~ 160 (662)
T 3azo_A 81 PWAGVPRPAGGPLLVFTHFGDQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVR 160 (662)
T ss_dssp CEEEECCSSSSCEEEEEBTTTCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEE
T ss_pred cceeeeecCCCeEEEEEECCCCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCce
Confidence 45554 99998 775543 5677777765 2033455655 67789999999999999998877
Q ss_pred CeEEEEEcCC------CceeEecc-ccCCceeEEEECCCCCEEEEecCCC--------cEEEEEec-CCCCCCcchhhhh
Q psy18231 228 KSVILWEVTT------GQPVRRWR-EHASKVTCVKFNEDSSVVISGSQDN--------TVMMWDVK-SRSHHPIQVRCLN 291 (540)
Q Consensus 228 g~i~iwd~~~------~~~~~~~~-~h~~~v~~~~~~~~~~~l~s~~~dg--------~i~iwd~~-~~~~~~~~~~~~~ 291 (540)
..|.+||+.+ ++. ..+. .+...+..++|+|||++|+.++.++ .|.+||+. ++.....
T Consensus 161 ~~i~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~------ 233 (662)
T 3azo_A 161 RFLAAVPLDGSAAADRSAV-RELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADT------ 233 (662)
T ss_dssp EEEEEEETTSTTTTCGGGS-EESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEE------
T ss_pred eEEEEEECCCCccccCCce-eEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCccccc------
Confidence 5899999987 544 4555 5667888999999999999877553 79999987 3420000
Q ss_pred HhhhhcCCceeEEEEeecccccccccCceeeEEEeeeecccccceeeeeeccceeEEEeecccceecccccccccccchh
Q psy18231 292 EALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCF 371 (540)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (540)
.
T Consensus 234 -------------------------------------------------------------------------------~ 234 (662)
T 3azo_A 234 -------------------------------------------------------------------------------R 234 (662)
T ss_dssp -------------------------------------------------------------------------------E
T ss_pred -------------------------------------------------------------------------------E
Confidence 0
Q ss_pred hhhhcccccEEEEEecC--CeeEeeeCCC--eEEEEeCCCCceEEeeeCC----------ceEEEEEecCCcEEEeecCC
Q psy18231 372 QALKEARDSITSVHVSD--HEILTASLDC--RIRRYDIRTGNLVTDYVGE----------PIVDACFTRDCQCILTCSTD 437 (540)
Q Consensus 372 ~~~~~~~~~v~~l~~~~--~~l~~~~~dg--~i~iwd~~~~~~~~~~~~~----------~i~~~~~sp~~~~l~~~~~d 437 (540)
.....+...+..+.|+| ++++++..++ .|.+||+.+++.......+ .+..++|+|+++++++++.
T Consensus 235 ~l~~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~- 313 (662)
T 3azo_A 235 TLLGGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK- 313 (662)
T ss_dssp EEEEETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-
T ss_pred EeCCCCCceEcceEECCCCeEEEEECCCCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEEEEc-
Confidence 01123456788899998 6666777777 6777777677654433321 1567899999999999998
Q ss_pred CeEEEE--eccccchhhhhccCcCCcceEEEEecCCCCe--EEEeeCCCc--EEEEEecCCcceeEEEecccceeeeEEE
Q psy18231 438 ECLRLF--DKATGELLEEYKGHKSGDFRIECCLDSKDSQ--IFCGSSDGK--IYKWQLVDSSQISTLIHSVGKAVVNSLC 511 (540)
Q Consensus 438 g~i~i~--d~~~~~~~~~~~~~~~~v~~~~~~~s~~~~~--l~s~s~dg~--i~iwd~~~~~~~~~~~~~~~~~~v~~l~ 511 (540)
+.++|| |..+++ +..+..|...+..+ ++++++. +++++.+.. |++||+.+++...... .+...+....
T Consensus 314 ~~~~l~~~d~~~~~-~~~l~~~~~~~~~~---~s~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~l~~--~~~~~~~~~~ 387 (662)
T 3azo_A 314 GAAVLGILDPESGE-LVDAAGPWTEWAAT---LTVSGTRAVGVAASPRTAYEVVELDTVTGRARTIGA--RHTDPVDPAY 387 (662)
T ss_dssp SSCEEEEEETTTTE-EEECCSSCCEEEEE---EEEETTEEEEEEEETTEEEEEEEEETTTCCEEEEES--CCCCSSCGGG
T ss_pred CccEEEEEECCCCc-EEEecCCCCeEEEE---EecCCCEEEEEEcCCCCCCEEEEEECCCCceEEeec--CCcccCCccc
Confidence 999999 555554 56666665544433 1444543 444555544 5555655665433222 3333333334
Q ss_pred EcCCCcEEEeec-CCeeEEEE
Q psy18231 512 SHPTRKHIMSAC-GNNVKLWT 531 (540)
Q Consensus 512 ~s~d~~~l~s~~-d~~i~iw~ 531 (540)
+++...+.+.+. +..|..|-
T Consensus 388 ~~~~~~~~~~~~dg~~i~~~~ 408 (662)
T 3azo_A 388 YPEPQIRTFTAPDGREIHAHI 408 (662)
T ss_dssp SCCCEEEEEECTTSCEEEEEE
T ss_pred cCcceEEEEEcCCCCEEEEEE
Confidence 444444444444 33555554
|
| >1vhn_A Putative flavin oxidoreducatase; structural genomics, unknown function; HET: FMN; 1.59A {Thermotoga maritima} SCOP: c.1.4.1 | Back alignment and structure |
|---|
Probab=99.73 E-value=2.5e-18 Score=158.15 Aligned_cols=110 Identities=25% Similarity=0.405 Sum_probs=98.1
Q ss_pred ecCCceEEeccCCCCCHHHHHHHHHcCCCEEEeeeeecccccccchhhccccccCCCCCCEEEEEecCChhHHHHHHHHh
Q psy18231 13 LLKNLKHCDSTLWTSKLNFRQLVRSHNVDLCFTPMIIADSFIKSSKARNNEFSTSPEDTPLVVQFASNNHDDFVRATQYV 92 (540)
Q Consensus 13 ~~~~~~~~ap~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~ 92 (540)
.+++++++|||+++|++|||++++++|+++++|||+++..+.+..+.....+ .++.+.|+++|++|++|+.++++++..
T Consensus 2 ~l~nri~~APM~~~t~~~~r~~~~~~G~gli~te~~~~~~~~~~~~~~~~~l-~~~~~~~~~~QL~g~~~~~~~~aa~~a 80 (318)
T 1vhn_A 2 SLEVKVGLAPMAGYTDSAFRTLAFEWGADFAFSEMVSAKGFLMNSQKTEELL-PQPHERNVAVQIFGSEPNELSEAARIL 80 (318)
T ss_dssp ---CEEEECCCTTTCSHHHHHHHHTTTCCCEECSCEEHHHHHTTCHHHHHHS-CCTTCTTEEEEEECSCHHHHHHHHHHH
T ss_pred ccCCCEEECCCCCCCcHHHHHHHHHHCcCEEEeCCEEEcccccCCHhHHHhh-hCcCCCeEEEEeCCCCHHHHHHHHHHH
Confidence 5789999999999999999999999999999999999998887776666677 788899999999999999999999987
Q ss_pred cCCCCeEeeccCCCceEEEeccccceecccc
Q psy18231 93 APHCNGVDLNCGCPQRWAIKEGYGCALLSKQ 123 (540)
Q Consensus 93 ~~~~~~id~~~gc~~~~~~~~g~g~~l~~~~ 123 (540)
.+.+|.|++|+|||.......++|+.|+.++
T Consensus 81 ~~~~d~Iein~gcP~~~~r~~~~G~~l~~~~ 111 (318)
T 1vhn_A 81 SEKYKWIDLNAGCPVRKVVKEGAGGALLKDL 111 (318)
T ss_dssp TTTCSEEEEEECCCCHHHHHTTCGGGGGSCH
T ss_pred HHhCCEEEEECCCCcHhcCCCCcccchhhCH
Confidence 7669999999999998888889999999874
|
| >1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=5.1e-15 Score=147.50 Aligned_cols=279 Identities=10% Similarity=0.086 Sum_probs=192.9
Q ss_pred CCCCEEEEeeCCCcEEEEcCCCCeeEEEeecCCcceeEEEEeeCCCeEEEeeCCCeEEEEEcC--CCceeEeccccCCce
Q psy18231 174 VDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVT--TGQPVRRWREHASKV 251 (540)
Q Consensus 174 pdg~~lat~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~--~~~~~~~~~~h~~~v 251 (540)
|.+.++++...+++|.++|..+++.+.++.. ...+..+.|+|||+++++++.|+.|.+||+. +++.+..+... ...
T Consensus 165 ~~~~~~V~~~~~~~V~viD~~t~~v~~~i~~-g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G-~~P 242 (567)
T 1qks_A 165 LENLFSVTLRDAGQIALIDGSTYEIKTVLDT-GYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIG-SEA 242 (567)
T ss_dssp GGGEEEEEETTTTEEEEEETTTCCEEEEEEC-SSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECC-SEE
T ss_pred CCceEEEEeCCCCeEEEEECCCCeEEEEEeC-CCCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecC-CCC
Confidence 4455666777899999999999999998874 3456799999999999999999999999995 78887777643 346
Q ss_pred eEEEEC----CCCCEEEEecC-CCcEEEEEecCCCCCCcchhhhhHhhhhcCCceeEEEEeecccccccccCceeeEEEe
Q psy18231 252 TCVKFN----EDSSVVISGSQ-DNTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFA 326 (540)
Q Consensus 252 ~~~~~~----~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (540)
..++|+ |||+++++++. +++|.++|..+.+..... ..
T Consensus 243 ~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i--~~------------------------------------ 284 (567)
T 1qks_A 243 RSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQ--ST------------------------------------ 284 (567)
T ss_dssp EEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEE--EC------------------------------------
T ss_pred ceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEE--ec------------------------------------
Confidence 789999 69998887765 589999998776521000 00
Q ss_pred eeecccccceeeeeeccceeEEEeecccceecccccccccccchhhhhhcccc-cEEEEEecC---CeeEeeeCCCeEEE
Q psy18231 327 FRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEARD-SITSVHVSD---HEILTASLDCRIRR 402 (540)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~l~~~~---~~l~~~~~dg~i~i 402 (540)
..........|.. .+..+..++ ..++....+|.|.+
T Consensus 285 ----------------------------------------~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~ 324 (567)
T 1qks_A 285 ----------------------------------------RGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILL 324 (567)
T ss_dssp ----------------------------------------CEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEE
T ss_pred ----------------------------------------cccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEE
Confidence 0000000001111 445555554 45556667899999
Q ss_pred EeCCCCceE--Eeee-CCceEEEEEecCCcEEEeec-CCCeEEEEeccccchhhhhcc-CcCC--cceEEEEecCCCCeE
Q psy18231 403 YDIRTGNLV--TDYV-GEPIVDACFTRDCQCILTCS-TDECLRLFDKATGELLEEYKG-HKSG--DFRIECCLDSKDSQI 475 (540)
Q Consensus 403 wd~~~~~~~--~~~~-~~~i~~~~~sp~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~-~~~~--v~~~~~~~s~~~~~l 475 (540)
+|....+.+ ..+. +.....+.|+|+|+++++++ .++.|.++|+.+++.+..+.. ...+ -....+ ++|++..+
T Consensus 325 vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~-~~p~~g~v 403 (567)
T 1qks_A 325 VDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANF-VHPTFGPV 403 (567)
T ss_dssp EETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEE-EETTTEEE
T ss_pred EecCCCccceeeeeeccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCccceee-ECCCCCcE
Confidence 999876432 2332 35677899999999887655 578999999999987665543 1111 123332 57875544
Q ss_pred -EEee-CCCcEEEEEecC-------CcceeEEEecccceeeeEEEEcCCCcEEEeec----C----CeeEEEEcccc
Q psy18231 476 -FCGS-SDGKIYKWQLVD-------SSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC----G----NNVKLWTAEED 535 (540)
Q Consensus 476 -~s~s-~dg~i~iwd~~~-------~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~----d----~~i~iw~~~~~ 535 (540)
+++. .+++|.++|..+ .+.++++. .....-..+..+|++++|.+.. | ++|.++|+.+.
T Consensus 404 ~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~--~~g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~ 478 (567)
T 1qks_A 404 WATSHMGDDSVALIGTDPEGHPDNAWKILDSFP--ALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAM 478 (567)
T ss_dssp EEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEE--CSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGC
T ss_pred EEeCCCCCCeEEEecCCCCCCccccCEEEEEEe--cCCCCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCcc
Confidence 4443 568999999887 56777777 3333334577899999888755 2 49999998765
|
| >2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=99.73 E-value=3.9e-16 Score=161.99 Aligned_cols=271 Identities=7% Similarity=-0.023 Sum_probs=177.6
Q ss_pred CCCCCEEEEeeCCC-----cEEEEcCCCCeeEEEee------cCCcceeEEEEeeCCCeEE-----EeeCCCeEEEEEcC
Q psy18231 173 PVDGSYCLTCGSDK-----KIKLWNPYRNLLLKTYG------GHAHEVNDATAACDSSQIA-----SGASDKSVILWEVT 236 (540)
Q Consensus 173 spdg~~lat~~~dg-----~i~iwd~~~~~~~~~~~------~h~~~v~~l~~sp~~~~l~-----s~s~dg~i~iwd~~ 236 (540)
+|+|++++....++ .+.+.+...++....+. +|...+.+++|||||++|| .|+.+.+|++||+.
T Consensus 76 ~~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~d~~~~a~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~ 155 (695)
T 2bkl_A 76 SRRNGRFFYVRTHKDKEKAILYWRQGESGQEKVLLDPNGWSKDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVD 155 (695)
T ss_dssp EEETTEEEEEEECTTCSSCEEEEEESTTSCCEEEECGGGSSSSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETT
T ss_pred EEECCEEEEEEEcCCCeEEEEEEEcCCCCCcEEEEchHHhccCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECC
Confidence 47888888655433 24444544444333332 4556799999999999998 45556789999999
Q ss_pred CCceeEeccccCCce--eEEEECCCCCEEEEecCCCc-------------EEEEEecCCCCCCcchhhhhHhhhhcCCce
Q psy18231 237 TGQPVRRWREHASKV--TCVKFNEDSSVVISGSQDNT-------------VMMWDVKSRSHHPIQVRCLNEALKEARDSI 301 (540)
Q Consensus 237 ~~~~~~~~~~h~~~v--~~~~~~~~~~~l~s~~~dg~-------------i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (540)
+++.+. ..+...+ ..++|+|||+.|+.++.|.. |++|++.++......
T Consensus 156 tg~~~~--~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~l--------------- 218 (695)
T 2bkl_A 156 SGEWSK--VDVIEGGKYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTV--------------- 218 (695)
T ss_dssp TCCBCS--SCCBSCCTTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEE---------------
T ss_pred CCCCcC--CcccCcccccceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceE---------------
Confidence 998651 1122222 68999999999999988765 888888765421000
Q ss_pred eEEEEeecccccccccCceeeEEEeeeecccccceeeeeeccceeEEEeecccceecccccccccccchhhhhhcccccE
Q psy18231 302 TSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEARDSI 381 (540)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 381 (540)
+.....+...+
T Consensus 219 ---------------------------------------------------------------------v~~~~~~~~~~ 229 (695)
T 2bkl_A 219 ---------------------------------------------------------------------VHERTGDPTTF 229 (695)
T ss_dssp ---------------------------------------------------------------------EECCCCCTTCE
T ss_pred ---------------------------------------------------------------------EEecCCCCEEE
Confidence 00122344567
Q ss_pred EEEEecC--CeeEeeeCCC----eEEEEeCCCCceEEeeeC-CceEEEEEecCCcEEEeec---CCCeEEEEeccccch-
Q psy18231 382 TSVHVSD--HEILTASLDC----RIRRYDIRTGNLVTDYVG-EPIVDACFTRDCQCILTCS---TDECLRLFDKATGEL- 450 (540)
Q Consensus 382 ~~l~~~~--~~l~~~~~dg----~i~iwd~~~~~~~~~~~~-~~i~~~~~sp~~~~l~~~~---~dg~i~i~d~~~~~~- 450 (540)
.++.++| ++++.++.++ .|++||..+++....... ..+....+ ++|.+++... .++.|.+||+.+++.
T Consensus 230 ~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~-~~g~l~~~s~~~~~~~~l~~~d~~~~~~~ 308 (695)
T 2bkl_A 230 LQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDFRLLVKGVGAKYEVHA-WKDRFYVLTDEGAPRQRVFEVDPAKPARA 308 (695)
T ss_dssp EEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSCEEEEECSSCCEEEEE-ETTEEEEEECTTCTTCEEEEEBTTBCSGG
T ss_pred EEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCceEEeecCCCceEEEEe-cCCcEEEEECCCCCCCEEEEEeCCCCCcc
Confidence 7888988 6677766555 677787766554333322 34555555 6666444433 258899999987753
Q ss_pred -hhhhccCc--CCcceEEEEecCCCCeEEEeeCCCcEEEEEec-CCcceeEEEeccc-ceeeeEEEEcCCCcEEE----e
Q psy18231 451 -LEEYKGHK--SGDFRIECCLDSKDSQIFCGSSDGKIYKWQLV-DSSQISTLIHSVG-KAVVNSLCSHPTRKHIM----S 521 (540)
Q Consensus 451 -~~~~~~~~--~~v~~~~~~~s~~~~~l~s~s~dg~i~iwd~~-~~~~~~~~~~~~~-~~~v~~l~~s~d~~~l~----s 521 (540)
...+..+. ..+..+ +++ ++.++++...|+..++|.+. +++....+. .+ .+.+..++++|+++.|+ +
T Consensus 309 ~~~~l~~~~~~~~l~~~--~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~--~~~~~~v~~~~~s~d~~~l~~~~ss 383 (695)
T 2bkl_A 309 SWKEIVPEDSSASLLSV--SIV-GGHLSLEYLKDATSEVRVATLKGKPVRTVQ--LPGVGAASNLMGLEDLDDAYYVFTS 383 (695)
T ss_dssp GCEEEECCCSSCEEEEE--EEE-TTEEEEEEEETTEEEEEEEETTCCEEEECC--CSSSSEECCCBSCTTCSEEEEEEEE
T ss_pred CCeEEecCCCCCeEEEE--EEE-CCEEEEEEEECCEEEEEEEeCCCCeeEEec--CCCCeEEEEeecCCCCCEEEEEEcC
Confidence 23343333 234334 566 67788999999999888776 466555554 33 67788999999998776 3
Q ss_pred ec-CCeeEEEEcccc
Q psy18231 522 AC-GNNVKLWTAEED 535 (540)
Q Consensus 522 ~~-d~~i~iw~~~~~ 535 (540)
.. .++|++||+.++
T Consensus 384 ~~~P~~v~~~d~~~g 398 (695)
T 2bkl_A 384 FTTPRQIYKTSVSTG 398 (695)
T ss_dssp TTEEEEEEEEETTTC
T ss_pred CCCCCEEEEEECCCC
Confidence 33 579999998764
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=3.7e-14 Score=131.12 Aligned_cols=275 Identities=11% Similarity=0.009 Sum_probs=190.4
Q ss_pred ecCeEEEEeCCCCCEEEEeeCCCcEEEEcCCCCeeEEE-eecCCcceeEEEEeeCCCeEEEeeCCCeEEEEEcCCCcee-
Q psy18231 164 LSGLMHTRFPVDGSYCLTCGSDKKIKLWNPYRNLLLKT-YGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPV- 241 (540)
Q Consensus 164 ~~~v~~v~~spdg~~lat~~~dg~i~iwd~~~~~~~~~-~~~h~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~- 241 (540)
...+.+++++++|+++++...++.|.+||.. ++.... +..+...+.++++.+++.++++...++.|..||.. ++..
T Consensus 14 ~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~ 91 (299)
T 2z2n_A 14 DTGPYGITVSDKGKVWITQHKANMISCINLD-GKITEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKK-GIIKE 91 (299)
T ss_dssp SCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEE
T ss_pred CCCccceEECCCCCEEEEecCCCcEEEEcCC-CCeEEecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCC-CcEEE
Confidence 3578999999999987776668899999987 544322 22345778999999999988887778899999976 4332
Q ss_pred EeccccCCceeEEEECCCCCEEEEecCCCcEEEEEecCCCCCCcchhhhhHhhhhcCCceeEEEEeecccccccccCcee
Q psy18231 242 RRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHLSNGLLT 321 (540)
Q Consensus 242 ~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (540)
..+......+..+++.+++.++++...++.|..||. +++....
T Consensus 92 ~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~------------------------------------ 134 (299)
T 2z2n_A 92 YTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREY------------------------------------ 134 (299)
T ss_dssp EECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEE------------------------------------
T ss_pred EeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEe------------------------------------
Confidence 222234567899999999988887777888999987 4331000
Q ss_pred eEEEeeeecccccceeeeeeccceeEEEeecccceecccccccccccchhhhhhcccccEEEEEecC--CeeEeeeCCCe
Q psy18231 322 KLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEARDSITSVHVSD--HEILTASLDCR 399 (540)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~--~~l~~~~~dg~ 399 (540)
........+..+++++ ...++...++.
T Consensus 135 ---------------------------------------------------~~~~~~~~~~~i~~~~~g~l~v~~~~~~~ 163 (299)
T 2z2n_A 135 ---------------------------------------------------ELPNKGSYPSFITLGSDNALWFTENQNNA 163 (299)
T ss_dssp ---------------------------------------------------ECSSTTCCEEEEEECTTSCEEEEETTTTE
T ss_pred ---------------------------------------------------cCCCCCCCCceEEEcCCCCEEEEeCCCCE
Confidence 0011223567788887 44444555789
Q ss_pred EEEEeCCCCceEEe-ee--CCceEEEEEecCCcEEEeecCCCeEEEEeccccchhhh-hccCcCCcceEEEEecCCCCeE
Q psy18231 400 IRRYDIRTGNLVTD-YV--GEPIVDACFTRDCQCILTCSTDECLRLFDKATGELLEE-YKGHKSGDFRIECCLDSKDSQI 475 (540)
Q Consensus 400 i~iwd~~~~~~~~~-~~--~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~-~~~~~~~v~~~~~~~s~~~~~l 475 (540)
|..||. +++.... .. ...+..++++++|+++++...++.|.+||. +++.... ...+...+..+ +++++|+++
T Consensus 164 i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i--~~~~~g~l~ 239 (299)
T 2z2n_A 164 IGRITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEITEFKIPTPNARPHAI--TAGAGIDLW 239 (299)
T ss_dssp EEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEE--EECSTTCEE
T ss_pred EEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEECC-CCcEEEEECCCCCCCceeE--EECCCCCEE
Confidence 999999 6655432 22 246889999999998877777889999998 6653321 22223344445 889999877
Q ss_pred EEeeCCCcEEEEEecCCcceeEEEecccceeeeEEEEcCCCcEEEeecCCeeEEEEcccc
Q psy18231 476 FCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEED 535 (540)
Q Consensus 476 ~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~d~~i~iw~~~~~ 535 (540)
++...++.|..||. +++ +..+....+...+.++++ +++.+.++...+.|..++.+++
T Consensus 240 v~~~~~~~i~~~d~-~g~-~~~~~~~~~~~~~~~i~~-~~g~l~v~~~~~~l~~~~~~~~ 296 (299)
T 2z2n_A 240 FTEWGANKIGRLTS-NNI-IEEYPIQIKSAEPHGICF-DGETIWFAMECDKIGKLTLIKD 296 (299)
T ss_dssp EEETTTTEEEEEET-TTE-EEEEECSSSSCCEEEEEE-CSSCEEEEETTTEEEEEEEC--
T ss_pred EeccCCceEEEECC-CCc-eEEEeCCCCCCccceEEe-cCCCEEEEecCCcEEEEEcCcc
Confidence 76667889999997 453 344433245567899999 8998887766566777776553
|
| >2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=1.6e-15 Score=157.84 Aligned_cols=240 Identities=18% Similarity=0.124 Sum_probs=164.5
Q ss_pred eecCeEEEEeCCCCCEEEEeeCCC-----cEEEEcCCCCeeEEEeecCCcceeEEEEeeCCCeEEEeeCCCe--------
Q psy18231 163 VLSGLMHTRFPVDGSYCLTCGSDK-----KIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKS-------- 229 (540)
Q Consensus 163 h~~~v~~v~~spdg~~lat~~~dg-----~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~dg~-------- 229 (540)
|...+..++|||||++||.++.++ +|++||+.+++.+.....+ ..+.+++|+|||+.|+.++.++.
T Consensus 123 ~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~-~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~ 201 (710)
T 2xdw_A 123 GTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLER-VKFSCMAWTHDGKGMFYNAYPQQDGKSDGTE 201 (710)
T ss_dssp SCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEE-ECSCCEEECTTSSEEEEEECCCCSSCCSSSC
T ss_pred CCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccC-cccceEEEEeCCCEEEEEEECCccccccccc
Confidence 444688999999999999765433 8999999999877643322 23678999999999999888766
Q ss_pred --------EEEEEcCCCce----eEeccccCCceeEEEECCCCCEEEEecC-----CCcEEEEEecC------CCCCCcc
Q psy18231 230 --------VILWEVTTGQP----VRRWREHASKVTCVKFNEDSSVVISGSQ-----DNTVMMWDVKS------RSHHPIQ 286 (540)
Q Consensus 230 --------i~iwd~~~~~~----~~~~~~h~~~v~~~~~~~~~~~l~s~~~-----dg~i~iwd~~~------~~~~~~~ 286 (540)
|.+|++.+++. +.....|...+..+.|+|||++|+.++. +..|.+||+.+ +.... .
T Consensus 202 ~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~-~ 280 (710)
T 2xdw_A 202 TSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKW-V 280 (710)
T ss_dssp CCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCC-E
T ss_pred cccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccce-E
Confidence 99999988762 2223335666889999999999887764 56899999876 32000 0
Q ss_pred hhhhhHhhhhcCCceeEEEEeecccccccccCceeeEEEeeeecccccceeeeeeccceeEEEeecccceeccccccccc
Q psy18231 287 VRCLNEALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISI 366 (540)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (540)
T Consensus 281 -------------------------------------------------------------------------------- 280 (710)
T 2xdw_A 281 -------------------------------------------------------------------------------- 280 (710)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccchhhhhhcccccEEEEEecC--CeeEeeeC----CCeEEEEeCCCCce--EEeee-C---CceEEEEEecCCcEEEee
Q psy18231 367 HNSCFQALKEARDSITSVHVSD--HEILTASL----DCRIRRYDIRTGNL--VTDYV-G---EPIVDACFTRDCQCILTC 434 (540)
Q Consensus 367 ~~~~~~~~~~~~~~v~~l~~~~--~~l~~~~~----dg~i~iwd~~~~~~--~~~~~-~---~~i~~~~~sp~~~~l~~~ 434 (540)
.+..+...+.. .+++ +.++..+. .+.|.+||+.++.. ...+. . ..+..++|++++.++++.
T Consensus 281 ------~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~ 353 (710)
T 2xdw_A 281 ------KLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCY 353 (710)
T ss_dssp ------EEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEE
T ss_pred ------EeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEEEEE
Confidence 11111222222 1332 44444433 34799999987641 22332 2 257889999888888888
Q ss_pred cCCCe--EEEEeccccchhhhhccCcCCcceEEEEecCCCCeEEEe----eCCCcEEEEEecCCc
Q psy18231 435 STDEC--LRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCG----SSDGKIYKWQLVDSS 493 (540)
Q Consensus 435 ~~dg~--i~i~d~~~~~~~~~~~~~~~~v~~~~~~~s~~~~~l~s~----s~dg~i~iwd~~~~~ 493 (540)
..++. |++||+.+++.+..+..+...+..+ +++|+++.++.. ...++|+.||+.+++
T Consensus 354 ~~~g~~~l~~~~~~~g~~~~~l~~~~~~v~~~--~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 354 LHDVKNTLQLHDLATGALLKIFPLEVGSVVGY--SGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp EETTEEEEEEEETTTCCEEEEECCCSSEEEEE--ECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred EECCEEEEEEEECCCCCEEEecCCCCceEEEE--ecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence 88885 5667776777666777665544444 788988766533 245789999998877
|
| >3b0p_A TRNA-dihydrouridine synthase; TIM barrel, oxidoreductase; HET: FMN; 1.70A {Thermus thermophilus} PDB: 3b0u_X* 3b0v_C* | Back alignment and structure |
|---|
Probab=99.72 E-value=2.6e-18 Score=159.31 Aligned_cols=109 Identities=24% Similarity=0.440 Sum_probs=96.6
Q ss_pred ecCCceEEeccCCCCCHHHHHHHHHcCC-CEEEeeeeecccccccchhhccccccCCCCCCEEEEEecCChhHHHHHHHH
Q psy18231 13 LLKNLKHCDSTLWTSKLNFRQLVRSHNV-DLCFTPMIIADSFIKSSKARNNEFSTSPEDTPLVVQFASNNHDDFVRATQY 91 (540)
Q Consensus 13 ~~~~~~~~ap~~~~~~~~~r~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~ 91 (540)
++++++++|||+|+|+++||.+++++|+ +++||||+++..++++.+.. .+..++++.|+++|++|++|+.++++++.
T Consensus 1 ~l~nriv~APM~g~td~~~r~~~r~~Gg~gli~te~~~~~~~~~~~~~~--~~~~~~~~~p~~vQL~g~~p~~~~~aA~~ 78 (350)
T 3b0p_A 1 MLDPRLSVAPMVDRTDRHFRFLVRQVSLGVRLYTEMTVDQAVLRGNRER--LLAFRPEEHPIALQLAGSDPKSLAEAARI 78 (350)
T ss_dssp -CCCSEEECCCTTTSSHHHHHHHHHHCSSSBEECCCEEHHHHHHSCHHH--HHCCCGGGCSEEEEEECSCHHHHHHHHHH
T ss_pred CCCCCEEECCCCCCCHHHHHHHHHHcCCCCEEEeCCEEechhhcCCHHH--HhccCCCCCeEEEEeCCCCHHHHHHHHHH
Confidence 4789999999999999999999999986 99999999999988766643 33457889999999999999999999998
Q ss_pred hcC-CCCeEeeccCCCceEEEeccccceecccc
Q psy18231 92 VAP-HCNGVDLNCGCPQRWAIKEGYGCALLSKQ 123 (540)
Q Consensus 92 ~~~-~~~~id~~~gc~~~~~~~~g~g~~l~~~~ 123 (540)
+.+ ++|.|++|+|||......+++|++|+.++
T Consensus 79 a~~~G~D~IeIn~gcP~~~~~~d~~G~~l~~~~ 111 (350)
T 3b0p_A 79 GEAFGYDEINLNLGCPSEKAQEGGYGACLLLDL 111 (350)
T ss_dssp HHHTTCSEEEEEECCCSHHHHHTTCGGGGGGCH
T ss_pred HHHcCCCEEEECCcCCCCcCcCCCcchhHHhCH
Confidence 765 79999999999999888899999998774
|
| >2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H* | Back alignment and structure |
|---|
Probab=99.72 E-value=2.7e-14 Score=135.47 Aligned_cols=267 Identities=9% Similarity=0.002 Sum_probs=183.2
Q ss_pred EeCCCCCEEEEeeC--CC---cEEEEcCCCCeeEEEeecCCcceeEEEEeeCCCeEEEee----------CCCeEEEEEc
Q psy18231 171 RFPVDGSYCLTCGS--DK---KIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGA----------SDKSVILWEV 235 (540)
Q Consensus 171 ~~spdg~~lat~~~--dg---~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s----------~dg~i~iwd~ 235 (540)
...|+++++++... .. +|.++|..+++.+.++.....+ .++++||+++|+.+. .++.|.+||.
T Consensus 27 ~~~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~ 104 (373)
T 2mad_H 27 APGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDP 104 (373)
T ss_pred cCCCCCCEEEEeCCcccCCccEEEEEECCCCeEEEEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEEC
Confidence 34578888777653 22 8899999999998888754444 899999999998886 3678999999
Q ss_pred CCCceeEecccc-------CCceeEEEECCCCCEEEEecC--CCcEEEEEecCCCCCCcchhhhhHhhhhcCCceeEEEE
Q psy18231 236 TTGQPVRRWREH-------ASKVTCVKFNEDSSVVISGSQ--DNTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHS 306 (540)
Q Consensus 236 ~~~~~~~~~~~h-------~~~v~~~~~~~~~~~l~s~~~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (540)
.+.+.+..+.-. ......+.|+|||++|+.+.. +++|.++| .+++.. .
T Consensus 105 ~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~--~-------------------- 161 (373)
T 2mad_H 105 VTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSD--D-------------------- 161 (373)
T ss_pred CCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEE--e--------------------
Confidence 998887765421 133568999999999998874 47899999 877520 0
Q ss_pred eecccccccccCceeeEEEeeeecccccceeeeeeccceeEEEeecccceecccccccccccchhhh-hhcccccEEEEE
Q psy18231 307 LVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQA-LKEARDSITSVH 385 (540)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~l~ 385 (540)
. + .....+.-..
T Consensus 162 ------------------------------------------------------------------~~i-~~~~~~~~~~ 174 (373)
T 2mad_H 162 ------------------------------------------------------------------QLL-SSPTCYHIHP 174 (373)
T ss_pred ------------------------------------------------------------------EEc-CCCceEEEEe
Confidence 0 0 0001111111
Q ss_pred ecCCeeEeeeCCCeEEEEeCCCCceEEeee------C-Cc-eEEEEEecCCcEEEeecCCCeEEEEeccccc--hhhhhc
Q psy18231 386 VSDHEILTASLDCRIRRYDIRTGNLVTDYV------G-EP-IVDACFTRDCQCILTCSTDECLRLFDKATGE--LLEEYK 455 (540)
Q Consensus 386 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~------~-~~-i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~ 455 (540)
..+..+++.+.||.+.++|. +++...... + .+ .....+.+++..++..+.++.+.+.|+.... .+..+.
T Consensus 175 ~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~ 253 (373)
T 2mad_H 175 GAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPID 253 (373)
T ss_pred CCCceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeee
Confidence 22255677778999999999 777663322 1 12 1234667766555555578899999986542 222221
Q ss_pred cC----------cCCcceEEEEecCCCCeEEEeeC----------CCcEEEEEecCCcceeEEEecccceeeeEEEEcCC
Q psy18231 456 GH----------KSGDFRIECCLDSKDSQIFCGSS----------DGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPT 515 (540)
Q Consensus 456 ~~----------~~~v~~~~~~~s~~~~~l~s~s~----------dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d 515 (540)
.. ......+ +++++++.++.+.. ++.|.++|..+++.+.++.. .....+++|+||
T Consensus 254 ~~~~~~~~~~~~p~g~~~~--~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~---g~~p~~i~~s~D 328 (373)
T 2mad_H 254 ALSGGRKADTWRPGGWQQV--AYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISL---GHDVDAISVAQD 328 (373)
T ss_pred ecCCcccccceecCceEeE--EECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEEC---CCCcCeEEECCC
Confidence 11 1111123 78999998777653 35799999999999999873 235899999999
Q ss_pred Cc-EEEeec--CCeeEEEEcccc
Q psy18231 516 RK-HIMSAC--GNNVKLWTAEED 535 (540)
Q Consensus 516 ~~-~l~s~~--d~~i~iw~~~~~ 535 (540)
|+ +++++. ++.|.+||+.++
T Consensus 329 g~~~l~v~~~~~~~V~ViD~~t~ 351 (373)
T 2mad_H 329 GGPDLYALSAGTEVLHIYDAGAG 351 (373)
T ss_pred CCeEEEEEcCCCCeEEEEECCCC
Confidence 99 677765 899999999765
|
| >2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=99.71 E-value=1.7e-16 Score=164.75 Aligned_cols=237 Identities=9% Similarity=-0.024 Sum_probs=159.1
Q ss_pred eecCeEEEEeCCCCCEEE-----EeeCCCcEEEEcCCCCeeEEEeecCCcce--eEEEEeeCCCeEEEeeCCCe------
Q psy18231 163 VLSGLMHTRFPVDGSYCL-----TCGSDKKIKLWNPYRNLLLKTYGGHAHEV--NDATAACDSSQIASGASDKS------ 229 (540)
Q Consensus 163 h~~~v~~v~~spdg~~la-----t~~~dg~i~iwd~~~~~~~~~~~~h~~~v--~~l~~sp~~~~l~s~s~dg~------ 229 (540)
|...+..++|||||++|| .|+.+.+|++||+.+++.+. ..+...+ ..++|+|||+.|+.++.|..
T Consensus 119 ~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~--~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~ 196 (695)
T 2bkl_A 119 GTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSK--VDVIEGGKYATPKWTPDSKGFYYEWLPTDPSIKVD 196 (695)
T ss_dssp SCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCS--SCCBSCCTTCCCEECTTSSEEEEEECCCCTTSCGG
T ss_pred CCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcC--CcccCcccccceEEecCCCEEEEEEecCCCCCccc
Confidence 455789999999999999 44445789999999988641 1122223 68999999999999988776
Q ss_pred -------EEEEEcCCCc----eeEeccccCCceeEEEECCCCCEEEEecCCC----cEEEEEecCCCCCCcchhhhhHhh
Q psy18231 230 -------VILWEVTTGQ----PVRRWREHASKVTCVKFNEDSSVVISGSQDN----TVMMWDVKSRSHHPIQVRCLNEAL 294 (540)
Q Consensus 230 -------i~iwd~~~~~----~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg----~i~iwd~~~~~~~~~~~~~~~~~~ 294 (540)
|++|++.+++ .+.....|...+..+.|+|||++|+.++.++ .|.+|+..+++. .
T Consensus 197 ~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~--~--------- 265 (695)
T 2bkl_A 197 ERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDF--R--------- 265 (695)
T ss_dssp GGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSC--E---------
T ss_pred cCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCce--E---------
Confidence 9999998876 3334445667889999999999988877665 455554332221 0
Q ss_pred hhcCCceeEEEEeecccccccccCceeeEEEeeeecccccceeeeeeccceeEEEeecccceecccccccccccchhhhh
Q psy18231 295 KEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQAL 374 (540)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (540)
.+
T Consensus 266 ------------------------------------------------------------------------------~l 267 (695)
T 2bkl_A 266 ------------------------------------------------------------------------------LL 267 (695)
T ss_dssp ------------------------------------------------------------------------------EE
T ss_pred ------------------------------------------------------------------------------Ee
Confidence 11
Q ss_pred hcccccEEEEEecC-CeeEeee----CCCeEEEEeCCCCce---EEeee---CCceEEEEEecCCcEEEeecCCCeEEEE
Q psy18231 375 KEARDSITSVHVSD-HEILTAS----LDCRIRRYDIRTGNL---VTDYV---GEPIVDACFTRDCQCILTCSTDECLRLF 443 (540)
Q Consensus 375 ~~~~~~v~~l~~~~-~~l~~~~----~dg~i~iwd~~~~~~---~~~~~---~~~i~~~~~sp~~~~l~~~~~dg~i~i~ 443 (540)
..+...+....+++ + ++..+ .++.|.+||+.+++. ...+. ...+..++++ ++.++++...|+..+||
T Consensus 268 ~~~~~~~~~~~~~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~ 345 (695)
T 2bkl_A 268 VKGVGAKYEVHAWKDR-FYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGHLSLEYLKDATSEVR 345 (695)
T ss_dssp EECSSCCEEEEEETTE-EEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTEEEEEEEETTEEEEE
T ss_pred ecCCCceEEEEecCCc-EEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCEEEEEEEECCEEEEE
Confidence 11222223333333 4 44333 358899999987652 22222 2357888888 77888889999988888
Q ss_pred ecc-ccchhhhhccC-cCCcceEEEEecCCCCeEE----EeeCCCcEEEEEecCCcc
Q psy18231 444 DKA-TGELLEEYKGH-KSGDFRIECCLDSKDSQIF----CGSSDGKIYKWQLVDSSQ 494 (540)
Q Consensus 444 d~~-~~~~~~~~~~~-~~~v~~~~~~~s~~~~~l~----s~s~dg~i~iwd~~~~~~ 494 (540)
.+. +++.+..+..+ ...+..+ +++++++.++ +....++|++||+.+++.
T Consensus 346 ~~~~~g~~~~~l~~~~~~~v~~~--~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~~ 400 (695)
T 2bkl_A 346 VATLKGKPVRTVQLPGVGAASNL--MGLEDLDDAYYVFTSFTTPRQIYKTSVSTGKS 400 (695)
T ss_dssp EEETTCCEEEECCCSSSSEECCC--BSCTTCSEEEEEEEETTEEEEEEEEETTTCCE
T ss_pred EEeCCCCeeEEecCCCCeEEEEe--ecCCCCCEEEEEEcCCCCCCEEEEEECCCCcE
Confidence 654 35444555444 3444444 7889988766 333457899999988763
|
| >3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} | Back alignment and structure |
|---|
Probab=99.71 E-value=2e-15 Score=137.04 Aligned_cols=250 Identities=10% Similarity=0.172 Sum_probs=178.4
Q ss_pred CCCEEEEeeCCCcEEEEcCCCCeeEEEeecCC-cceeEEEEeeCCCeEEEeeCCCeEEEEEcCCCceeEecccc-CCcee
Q psy18231 175 DGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHA-HEVNDATAACDSSQIASGASDKSVILWEVTTGQPVRRWREH-ASKVT 252 (540)
Q Consensus 175 dg~~lat~~~dg~i~iwd~~~~~~~~~~~~h~-~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h-~~~v~ 252 (540)
.+++|++++.++.|.+||.++++.+.++..+. ..+.++.++|+|++|+ +.++.|..||. +++.+..+..+ ...+.
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~~~W~~~~~~~~~~~ 80 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-DGRELWNIAAPAGCEMQ 80 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TSCEEEEEECCTTCEEE
T ss_pred CCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-CCCEEEEEcCCCCcccc
Confidence 45789999999999999999999999998776 5789999999999888 45788999998 89999888765 35788
Q ss_pred EEEECCCCCEEEEecC-CCcEEEEEecCCCCCCcchhhhhHhhhhcCCceeEEEEeecccccccccCceeeEEEeeeecc
Q psy18231 253 CVKFNEDSSVVISGSQ-DNTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKY 331 (540)
Q Consensus 253 ~~~~~~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (540)
++.+.++|+++++.+. ++.|..+|. +++. +.
T Consensus 81 ~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~--l~--------------------------------------------- 112 (276)
T 3no2_A 81 TARILPDGNALVAWCGHPSTILEVNM-KGEV--LS--------------------------------------------- 112 (276)
T ss_dssp EEEECTTSCEEEEEESTTEEEEEECT-TSCE--EE---------------------------------------------
T ss_pred ccEECCCCCEEEEecCCCCEEEEEeC-CCCE--EE---------------------------------------------
Confidence 9999999999998876 666666664 3331 00
Q ss_pred cccceeeeeeccceeEEEeecccceecccccccccccchhhhhhcccccEEEEEecC--CeeEeeeCCCeEEEEeCCCCc
Q psy18231 332 LNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEARDSITSVHVSD--HEILTASLDCRIRRYDIRTGN 409 (540)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~--~~l~~~~~dg~i~iwd~~~~~ 409 (540)
-+...+ ....+......+++.+ +++++...++.|..||.+ ++
T Consensus 113 -----------------~~~~~~------------------~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~ 156 (276)
T 3no2_A 113 -----------------KTEFET------------------GIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-GQ 156 (276)
T ss_dssp -----------------EEEECC------------------SCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-SC
T ss_pred -----------------EEeccC------------------CCCcccccccCceECCCCCEEEEecCCCEEEEECCC-CC
Confidence 000000 0000001122233444 788888899999999998 99
Q ss_pred eEEeeeC-CceEEEEEecCCcEEEeecCCCeEEEEeccccchhhhhccCcCC----cceEEEEecCCCCeEEEeeCC---
Q psy18231 410 LVTDYVG-EPIVDACFTRDCQCILTCSTDECLRLFDKATGELLEEYKGHKSG----DFRIECCLDSKDSQIFCGSSD--- 481 (540)
Q Consensus 410 ~~~~~~~-~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~----v~~~~~~~s~~~~~l~s~s~d--- 481 (540)
.+.++.. ....++...++|+.+++++.++.|..+|..+++.+.++..+... ......+..++|..+++....
T Consensus 157 ~~w~~~~~~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~~~g~~~ 236 (276)
T 3no2_A 157 LLNSVKLSGTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQNGGLYICNWQGHDR 236 (276)
T ss_dssp EEEEEECSSCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECTTSCEEEEEECTTCT
T ss_pred EEEEEECCCCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCCCCccccccccceEcCCCCEEEEeccCccc
Confidence 9888875 45677888999999999998999999999999988777543211 112233677889888776421
Q ss_pred -----CcEEEEEe-cCCcceeEEEecccceeeeEEE
Q psy18231 482 -----GKIYKWQL-VDSSQISTLIHSVGKAVVNSLC 511 (540)
Q Consensus 482 -----g~i~iwd~-~~~~~~~~~~~~~~~~~v~~l~ 511 (540)
+..+++++ .+++.+-++.....-+.+++++
T Consensus 237 ~~~~~~~~~~~~~~~~g~~~W~~~~~~~~~~~~~~~ 272 (276)
T 3no2_A 237 EAGKGKHPQLVEIDSEGKVVWQLNDKVKFGMISTIC 272 (276)
T ss_dssp TGGGSCCCSEEEECTTSBEEEEECCTTTSCCCCEEE
T ss_pred cccccCCceEEEECCCCCEEEEecCcccccceeeee
Confidence 23456666 5777777776444445565554
|
| >2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.71 E-value=2.4e-15 Score=142.51 Aligned_cols=245 Identities=11% Similarity=0.089 Sum_probs=160.7
Q ss_pred cceeeeecccccceeeeeecCeEEEEeCCCCCEEEEeeCC---C--cEEEEcCCCCeeEEEeecCCcceeEEEEeeCCCe
Q psy18231 146 EWSIRVYRPLTVNRELFVLSGLMHTRFPVDGSYCLTCGSD---K--KIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQ 220 (540)
Q Consensus 146 ~~~i~~~~~~~~~~~~~h~~~v~~v~~spdg~~lat~~~d---g--~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~ 220 (540)
+..|.+|+......... ..+..++|||||++||..+.+ + .|.+||+.+++.......+ . +..++|+|||+.
T Consensus 42 ~~~l~~~d~~~~~~~~l--~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~-~-~~~~~wspdg~~ 117 (347)
T 2gop_A 42 ENTIVIENLKNNARRFI--ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEAK-N-IRSLEWNEDSRK 117 (347)
T ss_dssp EEEEEEEETTTCCEEEE--ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEES-E-EEEEEECTTSSE
T ss_pred cceEEEEeCCCCceEEc--ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcCC-C-ccceeECCCCCE
Confidence 55677887766542222 678999999999999977653 3 4888898888766555433 4 999999999999
Q ss_pred EEEeeCC---------------------------CeEEEEEcCCCceeEeccccCCceeEEEECCCCCEEEEecCCC---
Q psy18231 221 IASGASD---------------------------KSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDN--- 270 (540)
Q Consensus 221 l~s~s~d---------------------------g~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg--- 270 (540)
|+.++.+ ..|.+||+.+++.+..+.. . .+..+.|+||| ++++++.++
T Consensus 118 l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~spdg-~~~~~~~~~~~~ 194 (347)
T 2gop_A 118 LLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK-P-RFSSGIWHRDK-IVVNVPHREIIP 194 (347)
T ss_dssp EEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEEEEEEE-E-TTCEEEEETTE-EEEEEECCCSSC
T ss_pred EEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEEeeecC-C-CcccccCCCCe-EEEEEecccccc
Confidence 9887642 5799999988877455544 3 78899999999 777776542
Q ss_pred ----cEEEEEecCCCCCCcchhhhhHhhhhcCCceeEEEEeecccccccccCceeeEEEeeeecccccceeeeeecccee
Q psy18231 271 ----TVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHL 346 (540)
Q Consensus 271 ----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (540)
...+|.+.+++. .
T Consensus 195 ~~~~~~~l~~~d~~~~---~------------------------------------------------------------ 211 (347)
T 2gop_A 195 QYFKFWDIYIWEDGKE---E------------------------------------------------------------ 211 (347)
T ss_dssp CSSCCEEEEEEETTEE---E------------------------------------------------------------
T ss_pred cccccccEEEeCCCce---E------------------------------------------------------------
Confidence 345555442210 0
Q ss_pred EEEeecccceecccccccccccchhhhhhcccccEEEEEecCCeeEeeeCC--------CeEEEEeCCCCceEEeeeC--
Q psy18231 347 MVLLDFLGSTQIGDVTPISIHNSCFQALKEARDSITSVHVSDHEILTASLD--------CRIRRYDIRTGNLVTDYVG-- 416 (540)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~d--------g~i~iwd~~~~~~~~~~~~-- 416 (540)
.+..+ ..+..+..+.+.++.++.+ ..|.+|| +++......+
T Consensus 212 --------------------------~l~~~-~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~~~ 262 (347)
T 2gop_A 212 --------------------------KMFEK-VSFYAVDSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGILDEVD 262 (347)
T ss_dssp --------------------------EEEEE-ESEEEEEECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEESSTTCC
T ss_pred --------------------------EeccC-cceeeECCCCCEEEEEEccccCCccccceEEEEC--CCceEeccccCC
Confidence 01111 2223332222556555533 4688888 5554433333
Q ss_pred CceEE-EEEecCCcEEEeecCCCeEEEEeccccchhhhhccCcCCcceEEEEecCCCCeEEEeeCCCcE-EEEEecCCcc
Q psy18231 417 EPIVD-ACFTRDCQCILTCSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKI-YKWQLVDSSQ 494 (540)
Q Consensus 417 ~~i~~-~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~s~~~~~l~s~s~dg~i-~iwd~~~~~~ 494 (540)
..+.. +.|+ ++ ++++++.++.++|| +.+++.. .+..+...+..+ ++++ .++++++.++.. .+|.+. ++
T Consensus 263 ~~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~~g~~~-~~~~~~~~v~~~--~~s~--~~~~~~~~~~~~~~l~~~~-g~- 332 (347)
T 2gop_A 263 RGVGQAKIKD-GK-VYFTLFEEGSVNLY-IWDGEIK-PIAKGRHWIMGF--DVDE--IVVYLKETATRLRELFTWD-GE- 332 (347)
T ss_dssp SEEEEEEEET-TE-EEEEEEETTEEEEE-EESSSEE-EEECSSSEEEEE--EESS--SEEEEEECSSSCCEEEEES-SS-
T ss_pred cccCCccEEc-Cc-EEEEEecCCcEEEE-EcCCceE-EEecCCCeEEee--eeeC--cEEEEEcCCCChHHheEeC-Cc-
Confidence 45775 8999 88 88899999999999 8765543 333345555555 7888 677777777765 778776 43
Q ss_pred eeEEE
Q psy18231 495 ISTLI 499 (540)
Q Consensus 495 ~~~~~ 499 (540)
...+.
T Consensus 333 ~~~lt 337 (347)
T 2gop_A 333 EKQLT 337 (347)
T ss_dssp EEECC
T ss_pred EEEec
Confidence 34444
|
| >3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.70 E-value=6.5e-15 Score=136.07 Aligned_cols=235 Identities=9% Similarity=0.051 Sum_probs=165.4
Q ss_pred eecCeEEEEeCCCCC-EEEEeeCCCcEEEEcCCCCeeEEEeecCCcceeEEEEeeCCCeEEEeeCCCeEEEEEcCCCcee
Q psy18231 163 VLSGLMHTRFPVDGS-YCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPV 241 (540)
Q Consensus 163 h~~~v~~v~~spdg~-~lat~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~ 241 (540)
+.....+++|+|+|+ +++++..++.|..||..++ ...+..+...+.+++++|+|+++++...++.|.+||..+++..
T Consensus 26 ~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g~~~ 103 (296)
T 3e5z_A 26 GFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQREPGGEWE 103 (296)
T ss_dssp CCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEEESSCSSEEEEEECTTCCEEEEETTTTEEEEECSTTCCEE
T ss_pred CCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEEECCCCCcceeeECCCCcEEEEecCCCeEEEEcCCCCcEE
Confidence 445678999999998 6778888999999998877 5667777888999999999998888877899999999888765
Q ss_pred Eecccc----CCceeEEEECCCCCEEEEecCCC---------------cEEEEEecCCCCCCcchhhhhHhhhhcCCcee
Q psy18231 242 RRWREH----ASKVTCVKFNEDSSVVISGSQDN---------------TVMMWDVKSRSHHPIQVRCLNEALKEARDSIT 302 (540)
Q Consensus 242 ~~~~~h----~~~v~~~~~~~~~~~l~s~~~dg---------------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (540)
...... ...+..++++|+|+++++.+..| .-.+|.+..... ..
T Consensus 104 ~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~g~--~~---------------- 165 (296)
T 3e5z_A 104 SIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPDGT--LS---------------- 165 (296)
T ss_dssp EEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTTSC--EE----------------
T ss_pred EEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCCCC--EE----------------
Confidence 433221 23567899999999888732111 113333322110 00
Q ss_pred EEEEeecccccccccCceeeEEEeeeecccccceeeeeeccceeEEEeecccceecccccccccccchhhhhhcccccEE
Q psy18231 303 SVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEARDSIT 382 (540)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 382 (540)
.+..+.....
T Consensus 166 ----------------------------------------------------------------------~~~~~~~~~~ 175 (296)
T 3e5z_A 166 ----------------------------------------------------------------------APIRDRVKPN 175 (296)
T ss_dssp ----------------------------------------------------------------------EEECCCSSEE
T ss_pred ----------------------------------------------------------------------EeecCCCCCc
Confidence 1112234457
Q ss_pred EEEecC--CeeEeeeCCCeEEEEeCC-CCce---EEee--eCCceEEEEEecCCcEEEeecCCCeEEEEeccccchhhhh
Q psy18231 383 SVHVSD--HEILTASLDCRIRRYDIR-TGNL---VTDY--VGEPIVDACFTRDCQCILTCSTDECLRLFDKATGELLEEY 454 (540)
Q Consensus 383 ~l~~~~--~~l~~~~~dg~i~iwd~~-~~~~---~~~~--~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~ 454 (540)
.++|+| +.+++.+.++.|.+||+. +++. ...+ ....+..++++++|+++++. ++.|.+||.. ++.+..+
T Consensus 176 gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~--~~~v~~~~~~-g~~~~~~ 252 (296)
T 3e5z_A 176 GLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWASA--GDGVHVLTPD-GDELGRV 252 (296)
T ss_dssp EEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE--TTEEEEECTT-SCEEEEE
T ss_pred cEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc--CCeEEEECCC-CCEEEEE
Confidence 788988 556667778999999997 4544 2233 22456789999999977666 7899999986 7777777
Q ss_pred ccCcCCcceEEEEe-cCCCCeEEEeeCCCcEEEEEecCCcc
Q psy18231 455 KGHKSGDFRIECCL-DSKDSQIFCGSSDGKIYKWQLVDSSQ 494 (540)
Q Consensus 455 ~~~~~~v~~~~~~~-s~~~~~l~s~s~dg~i~iwd~~~~~~ 494 (540)
..+.. +..+ +| +++++.|++++.++ +.-++..+.+.
T Consensus 253 ~~~~~-~~~~--~f~~~d~~~L~v~t~~~-l~~~~~~~~~~ 289 (296)
T 3e5z_A 253 LTPQT-TSNL--CFGGPEGRTLYMTVSTE-FWSIETNVRGL 289 (296)
T ss_dssp ECSSC-CCEE--EEESTTSCEEEEEETTE-EEEEECSCCBC
T ss_pred ECCCC-ceeE--EEECCCCCEEEEEcCCe-EEEEEcccccc
Confidence 77766 6666 67 68999899888764 44555554443
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
Probab=99.70 E-value=2.6e-14 Score=133.73 Aligned_cols=267 Identities=9% Similarity=0.027 Sum_probs=176.6
Q ss_pred ccceeeeecccccceee---------eeecCeEEEEeCCCCCEEEEeeCCCcEEEEcCCCCeeEEEeecCCcceeEEEEe
Q psy18231 145 KEWSIRVYRPLTVNREL---------FVLSGLMHTRFPVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAA 215 (540)
Q Consensus 145 ~~~~i~~~~~~~~~~~~---------~h~~~v~~v~~spdg~~lat~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s 215 (540)
.+.+|.++++.+..... ........+.+. +++..++...++.|.+||..+++.+.++. .......++++
T Consensus 15 ~~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~i~-~~~~p~~i~~~ 92 (328)
T 3dsm_A 15 SNATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGRIT-GFTSPRYIHFL 92 (328)
T ss_dssp CCBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEEEE-CCSSEEEEEEE
T ss_pred CCceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEEcC-CCCCCcEEEEe
Confidence 35566677666543211 111335667774 34455555667999999999999999886 35678899999
Q ss_pred eCCCeEEEeeCCCeEEEEEcCCCceeEeccccC-----CceeEEEECCCCCEEEEec--CCCcEEEEEecCCCCCCcchh
Q psy18231 216 CDSSQIASGASDKSVILWEVTTGQPVRRWREHA-----SKVTCVKFNEDSSVVISGS--QDNTVMMWDVKSRSHHPIQVR 288 (540)
Q Consensus 216 p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~-----~~v~~~~~~~~~~~l~s~~--~dg~i~iwd~~~~~~~~~~~~ 288 (540)
++++.+++...++.|.+||..+++....+.... .....+++ ++..++.+. .++.|.++|+.+++.....
T Consensus 93 ~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~--~~~~lyv~~~~~~~~v~viD~~t~~~~~~i-- 168 (328)
T 3dsm_A 93 SDEKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ--YGKYVYVNCWSYQNRILKIDTETDKVVDEL-- 168 (328)
T ss_dssp ETTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE--ETTEEEEEECTTCCEEEEEETTTTEEEEEE--
T ss_pred CCCeEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE--ECCEEEEEcCCCCCEEEEEECCCCeEEEEE--
Confidence 998655555488999999999998776665322 14566777 344455544 4889999999876520000
Q ss_pred hhhHhhhhcCCceeEEEEeecccccccccCceeeEEEeeeecccccceeeeeeccceeEEEeecccceeccccccccccc
Q psy18231 289 CLNEALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHN 368 (540)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (540)
T Consensus 169 -------------------------------------------------------------------------------- 168 (328)
T 3dsm_A 169 -------------------------------------------------------------------------------- 168 (328)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred chhhhhhcccccEEEEEecC-CeeE-eeeCC----------CeEEEEeCCCCceEEeee---CCceEEEEEecCCcEEEe
Q psy18231 369 SCFQALKEARDSITSVHVSD-HEIL-TASLD----------CRIRRYDIRTGNLVTDYV---GEPIVDACFTRDCQCILT 433 (540)
Q Consensus 369 ~~~~~~~~~~~~v~~l~~~~-~~l~-~~~~d----------g~i~iwd~~~~~~~~~~~---~~~i~~~~~sp~~~~l~~ 433 (540)
. .......+.+++ ..++ ++..+ +.|.++|..+++....+. +.....++++|+++.|++
T Consensus 169 ------~-~g~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv 241 (328)
T 3dsm_A 169 ------T-IGIQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYW 241 (328)
T ss_dssp ------E-CSSCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEE
T ss_pred ------E-cCCCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEE
Confidence 0 001123455565 3333 33333 789999999998876665 346899999999998888
Q ss_pred ecCCCeEEEEeccccchhhh--hccCcCCcceEEEEecCC-CCeEEEe----eCCCcEEEEEecCCcceeEEEeccccee
Q psy18231 434 CSTDECLRLFDKATGELLEE--YKGHKSGDFRIECCLDSK-DSQIFCG----SSDGKIYKWQLVDSSQISTLIHSVGKAV 506 (540)
Q Consensus 434 ~~~dg~i~i~d~~~~~~~~~--~~~~~~~v~~~~~~~s~~-~~~l~s~----s~dg~i~iwd~~~~~~~~~~~~~~~~~~ 506 (540)
+.. .|.+||..+++.... +..+......+ +++|+ +.++++. ..++.|.+||.. ++.+.++.. ...
T Consensus 242 ~~~--~v~~~d~~t~~~~~~~~~~~~~~~p~gi--~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g~~~~~i~~---G~~ 313 (328)
T 3dsm_A 242 INN--DIWRMPVEADRVPVRPFLEFRDTKYYGL--TVNPNNGEVYVADAIDYQQQGIVYRYSPQ-GKLIDEFYV---GII 313 (328)
T ss_dssp ESS--SEEEEETTCSSCCSSCSBCCCSSCEEEE--EECTTTCCEEEEECTTSSSEEEEEEECTT-CCEEEEEEE---EES
T ss_pred Ecc--EEEEEECCCCceeeeeeecCCCCceEEE--EEcCCCCeEEEEcccccccCCEEEEECCC-CCEEEEEEe---ccC
Confidence 765 899999988875421 12112333444 89985 5555555 578999999987 998888863 233
Q ss_pred eeEEEE
Q psy18231 507 VNSLCS 512 (540)
Q Consensus 507 v~~l~~ 512 (540)
...++|
T Consensus 314 P~~~~~ 319 (328)
T 3dsm_A 314 PGAFCW 319 (328)
T ss_dssp EEEEEE
T ss_pred cceEEE
Confidence 455555
|
| >3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... | Back alignment and structure |
|---|
Probab=99.69 E-value=1.3e-14 Score=135.29 Aligned_cols=268 Identities=11% Similarity=0.099 Sum_probs=186.9
Q ss_pred EEeCCCCCEEEEeeC-----CCcEEEEcCCCCeeEEEeecCCcceeEEEEeeCCCeEEEee----------CCCeEEEEE
Q psy18231 170 TRFPVDGSYCLTCGS-----DKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGA----------SDKSVILWE 234 (540)
Q Consensus 170 v~~spdg~~lat~~~-----dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s----------~dg~i~iwd 234 (540)
....|+++++++... ++.|.+.|..+++.+.++..-..+ . ++++|||++++.++ .++.|.+||
T Consensus 38 ~~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD 115 (386)
T 3sjl_D 38 EAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVFD 115 (386)
T ss_dssp CCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEEC
T ss_pred eccCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCCC-c-EEECCCCCEEEEEcccccccccCCCCCEEEEEE
Confidence 345789998887765 679999999999999999755555 4 99999999988775 367899999
Q ss_pred cCCCceeEecccc-------CCceeEEEECCCCCEEEEecC--CCcEEEEEecCCCCCCcchhhhhHhhhhcCCceeEEE
Q psy18231 235 VTTGQPVRRWREH-------ASKVTCVKFNEDSSVVISGSQ--DNTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVH 305 (540)
Q Consensus 235 ~~~~~~~~~~~~h-------~~~v~~~~~~~~~~~l~s~~~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (540)
..+++.+..+.-. ......+.|+|||++++.+.. ++.|.++|+.+.+.....
T Consensus 116 ~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI------------------- 176 (386)
T 3sjl_D 116 PVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRML------------------- 176 (386)
T ss_dssp TTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEE-------------------
T ss_pred CCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEE-------------------
Confidence 9999988876432 124667999999999888764 689999999887620000
Q ss_pred EeecccccccccCceeeEEEeeeecccccceeeeeeccceeEEEeecccceecccccccccccchhhhhhcccccEEEEE
Q psy18231 306 SLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEARDSITSVH 385 (540)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~ 385 (540)
.. .+ ...+.
T Consensus 177 -------------------------------------------------------------------~v---~g-~~~~~ 185 (386)
T 3sjl_D 177 -------------------------------------------------------------------DV---PD-CYHIF 185 (386)
T ss_dssp -------------------------------------------------------------------EC---CS-EEEEE
T ss_pred -------------------------------------------------------------------EC---CC-cceee
Confidence 00 00 00111
Q ss_pred e-cCCeeEeeeCCCeEEEEeCCC-CceEEeeeC------Cce-EEEEEe-cCCcEEEeecCCCeEEEEeccccc--hhhh
Q psy18231 386 V-SDHEILTASLDCRIRRYDIRT-GNLVTDYVG------EPI-VDACFT-RDCQCILTCSTDECLRLFDKATGE--LLEE 453 (540)
Q Consensus 386 ~-~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~------~~i-~~~~~s-p~~~~l~~~~~dg~i~i~d~~~~~--~~~~ 453 (540)
. ....+++.+.||++.+.++.+ ++....... .++ ....|. ++|++++ .+.+|.|++.|+.+.. .+..
T Consensus 186 P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~~~~v~~~ 264 (386)
T 3sjl_D 186 PTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVW-PTYTGKIHQIDLSSGDAKFLPA 264 (386)
T ss_dssp EEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEE-EBTTSEEEEEECTTSSCEECCC
T ss_pred cCCCceeEEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcEEE-EeCCCEEEEEECCCCcceeecc
Confidence 1 125677888899999999876 554321111 122 224664 6887655 4457999999987553 2222
Q ss_pred hc---------c-CcCCcceEEEEecCCCCeEEEeeC----------CCcEEEEEecCCcceeEEEecccceeeeEEEEc
Q psy18231 454 YK---------G-HKSGDFRIECCLDSKDSQIFCGSS----------DGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSH 513 (540)
Q Consensus 454 ~~---------~-~~~~v~~~~~~~s~~~~~l~s~s~----------dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s 513 (540)
+. + .......+ +++++++.++.... .+.|.+.|+.+++.+..+.. ...+.+|+++
T Consensus 265 ~~~~~~~~~~~g~~p~g~q~~--a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~v---g~~~~~lavs 339 (386)
T 3sjl_D 265 VEALTEAERADGWRPGGWQQV--AYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEM---GHEIDSINVS 339 (386)
T ss_dssp EESSCHHHHHTTEEECSSSCE--EEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEE---EEEECEEEEC
T ss_pred eeccccccccccccCCCccee--eECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEEC---CCCcceEEEC
Confidence 21 0 11222334 67899998887643 25799999999999999974 3478899999
Q ss_pred CCCc-EEEee-c-CCeeEEEEcccc
Q psy18231 514 PTRK-HIMSA-C-GNNVKLWTAEED 535 (540)
Q Consensus 514 ~d~~-~l~s~-~-d~~i~iw~~~~~ 535 (540)
+|++ +|+++ . ++.|.++|..++
T Consensus 340 ~D~~~~ly~tn~~~~~VsViD~~t~ 364 (386)
T 3sjl_D 340 QDEKPLLYALSTGDKTLYIHDAESG 364 (386)
T ss_dssp SSSSCEEEEEETTTTEEEEEETTTC
T ss_pred CCCCeEEEEEcCCCCeEEEEECCCC
Confidence 9997 66664 4 899999999765
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A | Back alignment and structure |
|---|
Probab=99.68 E-value=1e-14 Score=132.73 Aligned_cols=238 Identities=7% Similarity=-0.004 Sum_probs=162.4
Q ss_pred CeEEEEeCCCCCEEE-EeeCCCcEEEEcCCCCeeEEEeecCCcceeEEEEeeCCCeEEEeeCCCeEEEEEcCCCceeEec
Q psy18231 166 GLMHTRFPVDGSYCL-TCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPVRRW 244 (540)
Q Consensus 166 ~v~~v~~spdg~~la-t~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~ 244 (540)
...+++++++|++++ +.+.++.|.+||..+.........+...+.+++++++++++++.. ++.|.+||..........
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~~~~~ 103 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQTVLP 103 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECTTCCEEEEET-TTEEEEECTTCSCCEECC
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECCCCCEEEEcC-CCEEEEEeCCCceEeeee
Confidence 677899999999776 546789999999766543322223445788999999998666666 889999998665443222
Q ss_pred cccCCceeEEEECCCCCEEEEecCCCcEEEEEecCCCCCCcchhhhhHhhhhcCCceeEEEEeecccccccccCceeeEE
Q psy18231 245 REHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHLSNGLLTKLV 324 (540)
Q Consensus 245 ~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (540)
......+..++++++++++++...++.|.+|+..+... ..
T Consensus 104 ~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~--~~-------------------------------------- 143 (270)
T 1rwi_B 104 FDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQ--TV-------------------------------------- 143 (270)
T ss_dssp CCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSC--EE--------------------------------------
T ss_pred cCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCcee--Ee--------------------------------------
Confidence 23336789999999999777777788899986443221 00
Q ss_pred EeeeecccccceeeeeeccceeEEEeecccceecccccccccccchhhhhhcccccEEEEEecC--CeeEeeeCCCeEEE
Q psy18231 325 FAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEARDSITSVHVSD--HEILTASLDCRIRR 402 (540)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~--~~l~~~~~dg~i~i 402 (540)
........+.++++++ +++++...++.|.+
T Consensus 144 ------------------------------------------------~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~ 175 (270)
T 1rwi_B 144 ------------------------------------------------LPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVK 175 (270)
T ss_dssp ------------------------------------------------CCCCSCCSCCCEEECTTCCEEEEEGGGTEEEE
T ss_pred ------------------------------------------------eccccCCCceeEEEeCCCCEEEEECCCCEEEE
Confidence 0001112345677776 44555556789999
Q ss_pred EeCCCCceEEeee-C-CceEEEEEecCCcEEEeecCCCeEEEEeccccchhhhhccCcCCcceEEEEecCCCCeEEEeeC
Q psy18231 403 YDIRTGNLVTDYV-G-EPIVDACFTRDCQCILTCSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSS 480 (540)
Q Consensus 403 wd~~~~~~~~~~~-~-~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~s~~~~~l~s~s~ 480 (540)
||........... + ..+..++++++|.++++...++.|.+||............+...+..+ +++++|+++++...
T Consensus 176 ~~~~~~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~p~~i--~~~~~g~l~v~~~~ 253 (270)
T 1rwi_B 176 LEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAV--AVDSDRTVYVADRG 253 (270)
T ss_dssp ECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEECCCCSCSCEEEE--EECTTCCEEEEEGG
T ss_pred EecCCCceEeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCcceeeccCCCCCceeE--EECCCCCEEEEECC
Confidence 9998766544322 2 568899999999888887788999999986554332222222334445 89999998888889
Q ss_pred CCcEEEEEecCCcc
Q psy18231 481 DGKIYKWQLVDSSQ 494 (540)
Q Consensus 481 dg~i~iwd~~~~~~ 494 (540)
++.|+++++...+.
T Consensus 254 ~~~v~~~~~~~~~~ 267 (270)
T 1rwi_B 254 NDRVVKLTSLEHHH 267 (270)
T ss_dssp GTEEEEECCCGGGS
T ss_pred CCEEEEEcCCCccc
Confidence 99999999876554
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A | Back alignment and structure |
|---|
Probab=99.66 E-value=1.8e-14 Score=131.06 Aligned_cols=237 Identities=8% Similarity=0.012 Sum_probs=162.4
Q ss_pred ceeEEEEeeCCCeEE-EeeCCCeEEEEEcCCCceeEeccccCCceeEEEECCCCCEEEEecCCCcEEEEEecCCCCCCcc
Q psy18231 208 EVNDATAACDSSQIA-SGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQ 286 (540)
Q Consensus 208 ~v~~l~~sp~~~~l~-s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 286 (540)
...++++++++++++ +.+.++.|.+||..++........+...+.+++++++++++++.. ++.|.+||.........
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~~~~- 102 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQTVL- 102 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECTTCCEEEEET-TTEEEEECTTCSCCEEC-
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECCCCCEEEEcC-CCEEEEEeCCCceEeee-
Confidence 678899999999777 557789999999766544332223445788999999998666655 88999998765431000
Q ss_pred hhhhhHhhhhcCCceeEEEEeecccccccccCceeeEEEeeeecccccceeeeeeccceeEEEeecccceeccccccccc
Q psy18231 287 VRCLNEALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISI 366 (540)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (540)
T Consensus 103 -------------------------------------------------------------------------------- 102 (270)
T 1rwi_B 103 -------------------------------------------------------------------------------- 102 (270)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccchhhhhhcccccEEEEEecC--CeeEeeeCCCeEEEEeCCCCceEEeeeC--CceEEEEEecCCcEEEeecCCCeEEE
Q psy18231 367 HNSCFQALKEARDSITSVHVSD--HEILTASLDCRIRRYDIRTGNLVTDYVG--EPIVDACFTRDCQCILTCSTDECLRL 442 (540)
Q Consensus 367 ~~~~~~~~~~~~~~v~~l~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~--~~i~~~~~sp~~~~l~~~~~dg~i~i 442 (540)
.......+.++++++ .++++...++.|.+|+..+......... ..+..++++|+|+++++...++.|.+
T Consensus 103 -------~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~ 175 (270)
T 1rwi_B 103 -------PFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVK 175 (270)
T ss_dssp -------CCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEE
T ss_pred -------ecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeCCCCEEEEECCCCEEEE
Confidence 001123467788887 4455556678999998766544332222 46788999999998887777889999
Q ss_pred EeccccchhhhhccCcCCcceEEEEecCCCCeEEEeeCCCcEEEEEecCCcceeEEEecccceeeeEEEEcCCCcEEEee
Q psy18231 443 FDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSA 522 (540)
Q Consensus 443 ~d~~~~~~~~~~~~~~~~v~~~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~ 522 (540)
||............+......+ +++++|.++++...++.|.+||....... .... .+...+.+++++++|+++++.
T Consensus 176 ~~~~~~~~~~~~~~~~~~p~~i--~~d~~g~l~v~~~~~~~v~~~~~~~~~~~-~~~~-~~~~~p~~i~~~~~g~l~v~~ 251 (270)
T 1rwi_B 176 LEAESNNQVVLPFTDITAPWGI--AVDEAGTVYVTEHNTNQVVKLLAGSTTST-VLPF-TGLNTPLAVAVDSDRTVYVAD 251 (270)
T ss_dssp ECTTTCCEEECCCSSCCSEEEE--EECTTCCEEEEETTTSCEEEECTTCSCCE-ECCC-CSCSCEEEEEECTTCCEEEEE
T ss_pred EecCCCceEeecccCCCCceEE--EECCCCCEEEEECCCCcEEEEcCCCCcce-eecc-CCCCCceeEEECCCCCEEEEE
Confidence 9987665433222222334445 89999977777777889999997554332 2221 334578999999999988888
Q ss_pred c-CCeeEEEEcccccC
Q psy18231 523 C-GNNVKLWTAEEDYG 537 (540)
Q Consensus 523 ~-d~~i~iw~~~~~~~ 537 (540)
. ++.|++++......
T Consensus 252 ~~~~~v~~~~~~~~~~ 267 (270)
T 1rwi_B 252 RGNDRVVKLTSLEHHH 267 (270)
T ss_dssp GGGTEEEEECCCGGGS
T ss_pred CCCCEEEEEcCCCccc
Confidence 7 99999999987643
|
| >3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} | Back alignment and structure |
|---|
Probab=99.64 E-value=5.3e-14 Score=127.65 Aligned_cols=211 Identities=9% Similarity=0.066 Sum_probs=159.9
Q ss_pred CCCeEEEeeCCCeEEEEEcCCCceeEeccccC-CceeEEEECCCCCEEEEecCCCcEEEEEecCCCCCCcchhhhhHhhh
Q psy18231 217 DSSQIASGASDKSVILWEVTTGQPVRRWREHA-SKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQVRCLNEALK 295 (540)
Q Consensus 217 ~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~-~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 295 (540)
.+++|++++.|+.|.+||.++|+.+..+..+. ..+.++.++|+|+++++ .++.|..||. +++. +
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilvs--~~~~V~~~d~-~G~~--~---------- 68 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILFS--YSKGAKMITR-DGRE--L---------- 68 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEEE--CBSEEEEECT-TSCE--E----------
T ss_pred CCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEEe--CCCCEEEECC-CCCE--E----------
Confidence 46789999999999999999999999988766 57899999999998883 4678999988 5541 0
Q ss_pred hcCCceeEEEEeecccccccccCceeeEEEeeeecccccceeeeeeccceeEEEeecccceecccccccccccchhhhhh
Q psy18231 296 EARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALK 375 (540)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (540)
| .+.
T Consensus 69 ---------------------------------------------------------------W-------------~~~ 72 (276)
T 3no2_A 69 ---------------------------------------------------------------W-------------NIA 72 (276)
T ss_dssp ---------------------------------------------------------------E-------------EEE
T ss_pred ---------------------------------------------------------------E-------------EEc
Confidence 0 000
Q ss_pred c-ccccEEEEEecC--CeeEeeeC-CCeEEEEeCCCCceEEeeeC--------CceEEEEEecCCcEEEeecCCCeEEEE
Q psy18231 376 E-ARDSITSVHVSD--HEILTASL-DCRIRRYDIRTGNLVTDYVG--------EPIVDACFTRDCQCILTCSTDECLRLF 443 (540)
Q Consensus 376 ~-~~~~v~~l~~~~--~~l~~~~~-dg~i~iwd~~~~~~~~~~~~--------~~i~~~~~sp~~~~l~~~~~dg~i~i~ 443 (540)
. ....+.++.+.+ +.+++.+. ++.+..+|. +++.+.++.- .....+++.++|+++++...++.|..|
T Consensus 73 ~~~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~ 151 (276)
T 3no2_A 73 APAGCEMQTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREI 151 (276)
T ss_dssp CCTTCEEEEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEE
T ss_pred CCCCccccccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEE
Confidence 0 112355666666 66666666 777888886 6776665541 134556789999999999999999999
Q ss_pred eccccchhhhhccCcCCcceEEEEecCCCCeEEEeeCCCcEEEEEecCCcceeEEEecc----cceeeeEEEEcCCCcEE
Q psy18231 444 DKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSV----GKAVVNSLCSHPTRKHI 519 (540)
Q Consensus 444 d~~~~~~~~~~~~~~~~v~~~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~----~~~~v~~l~~s~d~~~l 519 (540)
|.. |+.+.++..+.. ...+ ...++|+.+++++.++.|..+|..+++.+.++.... ....+..++..++|.++
T Consensus 152 d~~-G~~~w~~~~~~~-~~~~--~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~ 227 (276)
T 3no2_A 152 APN-GQLLNSVKLSGT-PFSS--AFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQNGGLY 227 (276)
T ss_dssp CTT-SCEEEEEECSSC-CCEE--EECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECTTSCEE
T ss_pred CCC-CCEEEEEECCCC-ccce--eEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCCCCccccccccceEcCCCCEE
Confidence 987 999888876533 3444 678999999999998999999999999999887211 12347888999999988
Q ss_pred Eeec
Q psy18231 520 MSAC 523 (540)
Q Consensus 520 ~s~~ 523 (540)
++..
T Consensus 228 v~~~ 231 (276)
T 3no2_A 228 ICNW 231 (276)
T ss_dssp EEEE
T ss_pred EEec
Confidence 8873
|
| >3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... | Back alignment and structure |
|---|
Probab=99.64 E-value=6.8e-14 Score=130.55 Aligned_cols=277 Identities=9% Similarity=0.040 Sum_probs=184.6
Q ss_pred cceeeeecccccceee-eeecCeEEEEeCCCCCEEEEee----------CCCcEEEEcCCCCeeEEEeecCC-------c
Q psy18231 146 EWSIRVYRPLTVNREL-FVLSGLMHTRFPVDGSYCLTCG----------SDKKIKLWNPYRNLLLKTYGGHA-------H 207 (540)
Q Consensus 146 ~~~i~~~~~~~~~~~~-~h~~~v~~v~~spdg~~lat~~----------~dg~i~iwd~~~~~~~~~~~~h~-------~ 207 (540)
+..+.+.+..+..... ...+.--.+++||||++|+++. .++.|.+||..+++.+.++.... .
T Consensus 58 ~~~V~ViD~~t~~v~~~I~vG~~P~va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~ 137 (386)
T 3sjl_D 58 VTQQFVIDGEAGRVIGMIDGGFLPNPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGT 137 (386)
T ss_dssp SEEEEEEETTTTEEEEEEEECSSCEEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSC
T ss_pred CCEEEEEECCCCeEEEEEECCCCCcEEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCccccccCC
Confidence 3567777776644221 1222222499999999988765 36789999999999998875321 2
Q ss_pred ceeEEEEeeCCCeEEEeeC--CCeEEEEEcCCCceeEeccccCCceeEEEECCCCCEEEEecCCCcEEEEEecC-CCCCC
Q psy18231 208 EVNDATAACDSSQIASGAS--DKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKS-RSHHP 284 (540)
Q Consensus 208 ~v~~l~~sp~~~~l~s~s~--dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~-~~~~~ 284 (540)
.-..++|+|||++|+.+.. ++.|.++|+.+++.+.++.-.. . ...+....+.+++.+.||.+.+.++.+ ++.
T Consensus 138 ~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g--~-~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v-- 212 (386)
T 3sjl_D 138 YPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPD--C-YHIFPTAPDTFFMHCRDGSLAKVAFGTEGTP-- 212 (386)
T ss_dssp CGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS--E-EEEEEEETTEEEEEETTSCEEEEECCSSSCC--
T ss_pred CCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCC--c-ceeecCCCceeEEECCCCCEEEEECCCCCeE--
Confidence 4567999999999888864 6899999999999988875322 1 223333446777888899999999876 331
Q ss_pred cchhhhhHhhhhcCCceeEEEEeecccccccccCceeeEEEeeeecccccceeeeeeccceeEEEeecccceeccccccc
Q psy18231 285 IQVRCLNEALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPI 364 (540)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (540)
.... . .
T Consensus 213 ~~~~-----------------------------------------------------------------~--~------- 218 (386)
T 3sjl_D 213 EITH-----------------------------------------------------------------T--E------- 218 (386)
T ss_dssp EEEE-----------------------------------------------------------------C--C-------
T ss_pred EEee-----------------------------------------------------------------c--c-------
Confidence 0000 0 0
Q ss_pred ccccchhhhhhcccccEE-EEEec-C-CeeEeeeCCCeEEEEeCCCCc--eEEeee------------CCceEEEEEecC
Q psy18231 365 SIHNSCFQALKEARDSIT-SVHVS-D-HEILTASLDCRIRRYDIRTGN--LVTDYV------------GEPIVDACFTRD 427 (540)
Q Consensus 365 ~~~~~~~~~~~~~~~~v~-~l~~~-~-~~l~~~~~dg~i~iwd~~~~~--~~~~~~------------~~~i~~~~~sp~ 427 (540)
.+......+. ...|. + ..++..+.+|.+.+.|+.+.. ....+. ......++++|+
T Consensus 219 --------~~~~~~~~~~~~~~~~~~dG~~~~vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~ 290 (386)
T 3sjl_D 219 --------VFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRA 290 (386)
T ss_dssp --------CCSCTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETT
T ss_pred --------eeccccccccccceeEcCCCcEEEEeCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCC
Confidence 0000000000 11332 2 444446668999999997664 333332 134456788999
Q ss_pred CcEEEeecC----------CCeEEEEeccccchhhhhccCcCCcceEEEEecCCCC-eEEEe-eCCCcEEEEEecCCcce
Q psy18231 428 CQCILTCST----------DECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDS-QIFCG-SSDGKIYKWQLVDSSQI 495 (540)
Q Consensus 428 ~~~l~~~~~----------dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~s~~~~-~l~s~-s~dg~i~iwd~~~~~~~ 495 (540)
++.+++... .+.|.++|+.+++.+..+.... .++.+ ++++|++ +|++. ..++.|.++|..+++.+
T Consensus 291 ~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg~-~~~~l--avs~D~~~~ly~tn~~~~~VsViD~~t~k~~ 367 (386)
T 3sjl_D 291 LDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGH-EIDSI--NVSQDEKPLLYALSTGDKTLYIHDAESGEEL 367 (386)
T ss_dssp TTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEE-EECEE--EECSSSSCEEEEEETTTTEEEEEETTTCCEE
T ss_pred CCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEECCC-CcceE--EECCCCCeEEEEEcCCCCeEEEEECCCCcEE
Confidence 988887643 2579999999999988876543 34555 8999997 66665 45899999999999999
Q ss_pred eEEEecccceeeeEEEEcCC
Q psy18231 496 STLIHSVGKAVVNSLCSHPT 515 (540)
Q Consensus 496 ~~~~~~~~~~~v~~l~~s~d 515 (540)
.++...+| .+.|.+++|
T Consensus 368 ~~i~~~~~---p~~l~~s~d 384 (386)
T 3sjl_D 368 RSVNQLGH---GPQVITTAD 384 (386)
T ss_dssp EEECCCCS---SCCEEEECC
T ss_pred EEecCCCC---CceeEECCc
Confidence 99975444 455666666
|
| >1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} | Back alignment and structure |
|---|
Probab=99.63 E-value=2e-14 Score=150.29 Aligned_cols=272 Identities=13% Similarity=0.049 Sum_probs=169.6
Q ss_pred CCCCCEEEEeeCCCc---EEEE--cCC---CCeeEEEe------ecCCcceeEEEEeeCCCeEEEeeCC-----CeEEEE
Q psy18231 173 PVDGSYCLTCGSDKK---IKLW--NPY---RNLLLKTY------GGHAHEVNDATAACDSSQIASGASD-----KSVILW 233 (540)
Q Consensus 173 spdg~~lat~~~dg~---i~iw--d~~---~~~~~~~~------~~h~~~v~~l~~sp~~~~l~s~s~d-----g~i~iw 233 (540)
+|||++++....++. -.+| +.. .++....+ .+|...+..++|||||++||.++.+ .+|++|
T Consensus 115 ~pdG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~ 194 (741)
T 1yr2_A 115 QRRGASVFYSWNSGLMNQSQLLVRPADAPVGTKGRVLLDPNTWAKDGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFV 194 (741)
T ss_dssp EEETTEEEEEEECSSCSSCEEEEEETTSCTTCCCEEEECGGGCC----EEEEEEEECTTSSEEEEEEEETTCSEEEEEEE
T ss_pred EEECCEEEEEEEcCCCeEEEEEEEcCCccCCCCCEEEECHHHhccCCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEE
Confidence 389998886544332 4445 433 33322221 2234478899999999999887654 469999
Q ss_pred EcCCCceeEeccccCCceeEEEECCCCCEEEEecCCCc--------------EEEEEecCCCCCCcchhhhhHhhhhcCC
Q psy18231 234 EVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNT--------------VMMWDVKSRSHHPIQVRCLNEALKEARD 299 (540)
Q Consensus 234 d~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~--------------i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 299 (540)
|+.+++.+... .+...+..++|+|| +.|+.++.++. |++|++.++......
T Consensus 195 dl~tg~~~~~~-~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~l------------- 259 (741)
T 1yr2_A 195 GVADGKPLADE-LKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQP------------- 259 (741)
T ss_dssp ETTTCCEEEEE-EEEEESCCCEESTT-SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEE-------------
T ss_pred ECCCCCCCCcc-CCCceeccEEEECC-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEE-------------
Confidence 99999876531 22223467899999 98888877654 666666543310000
Q ss_pred ceeEEEEeecccccccccCceeeEEEeeeecccccceeeeeeccceeEEEeecccceecccccccccccchhhhhhcccc
Q psy18231 300 SITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEARD 379 (540)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (540)
+.....+..
T Consensus 260 -----------------------------------------------------------------------v~~~~~~~~ 268 (741)
T 1yr2_A 260 -----------------------------------------------------------------------VFATPELPK 268 (741)
T ss_dssp -----------------------------------------------------------------------EECCTTCTT
T ss_pred -----------------------------------------------------------------------EeccCCCCe
Confidence 001112233
Q ss_pred cEEEEEecC--CeeEeeeCC-----CeEEEEeCCCC--ceEEeeeC--CceEEEEEecCCcEEEeecC----CCeEEEEe
Q psy18231 380 SITSVHVSD--HEILTASLD-----CRIRRYDIRTG--NLVTDYVG--EPIVDACFTRDCQCILTCST----DECLRLFD 444 (540)
Q Consensus 380 ~v~~l~~~~--~~l~~~~~d-----g~i~iwd~~~~--~~~~~~~~--~~i~~~~~sp~~~~l~~~~~----dg~i~i~d 444 (540)
.+..+.|+| ++++..+.+ ..|++||+.++ +....+.. ...... ++|+|+.|+..+. ++.|.+||
T Consensus 269 ~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~-~~~dg~~l~~~s~~~~~~~~l~~~d 347 (741)
T 1yr2_A 269 RGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQWDF-VDGVGDQLWFVSGDGAPLKKIVRVD 347 (741)
T ss_dssp CEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEE
T ss_pred EEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEe
Confidence 467888888 566666644 38999999877 31333332 233333 4588888887765 45699999
Q ss_pred cccc--chhhhhccCcCCcceEEEEecCCCCeEEEeeCCCcEEEEEec-CCcceeEEEecccceeeeEEEEcCCCcEEE-
Q psy18231 445 KATG--ELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLV-DSSQISTLIHSVGKAVVNSLCSHPTRKHIM- 520 (540)
Q Consensus 445 ~~~~--~~~~~~~~~~~~v~~~~~~~s~~~~~l~s~s~dg~i~iwd~~-~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~- 520 (540)
+.++ +....+..+...+..+ +++ ++.++++...|+..++|.+. +++....+.. .+.+.+..+.++|+++.|+
T Consensus 348 ~~~~~~~~~~l~~~~~~~l~~~--~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~-~~~~~v~~~~~s~d~~~l~~ 423 (741)
T 1yr2_A 348 LSGSTPRFDTVVPESKDNLESV--GIA-GNRLFASYIHDAKSQVLAFDLDGKPAGAVSL-PGIGSASGLSGRPGDRHAYL 423 (741)
T ss_dssp CSSSSCEEEEEECCCSSEEEEE--EEE-BTEEEEEEEETTEEEEEEEETTSCEEEECBC-SSSCEEEEEECCBTCSCEEE
T ss_pred CCCCccccEEEecCCCCeEEEE--EEE-CCEEEEEEEECCEEEEEEEeCCCCceeeccC-CCCeEEEEeecCCCCCEEEE
Confidence 8874 2222333333333333 555 56678888999988888765 4665555542 2467799999999988666
Q ss_pred ---eec-CCeeEEEEcccc
Q psy18231 521 ---SAC-GNNVKLWTAEED 535 (540)
Q Consensus 521 ---s~~-d~~i~iw~~~~~ 535 (540)
+.. .++|++||+.++
T Consensus 424 ~~ss~~~P~~i~~~d~~tg 442 (741)
T 1yr2_A 424 SFSSFTQPATVLALDPATA 442 (741)
T ss_dssp EEEETTEEEEEEEEETTTT
T ss_pred EEcCCCCCCEEEEEECCCC
Confidence 223 579999998764
|
| >3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} | Back alignment and structure |
|---|
Probab=99.63 E-value=1.3e-13 Score=131.07 Aligned_cols=265 Identities=11% Similarity=0.067 Sum_probs=183.4
Q ss_pred CCCCEEEEeeCC-----CcEEEEcCCCCeeEEEeecCCcceeEEEEeeCCCeEEEee----------CCCeEEEEEcCCC
Q psy18231 174 VDGSYCLTCGSD-----KKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGA----------SDKSVILWEVTTG 238 (540)
Q Consensus 174 pdg~~lat~~~d-----g~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s----------~dg~i~iwd~~~~ 238 (540)
|+++++++.... +.|.++|..+++.+.++..-..+ .++++||+++|+.+. .++.|.++|..++
T Consensus 82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~ 159 (426)
T 3c75_H 82 PDARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTF 159 (426)
T ss_dssp CCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTC
T ss_pred CCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCC
Confidence 466666655442 69999999999999999755555 899999999988876 3678999999999
Q ss_pred ceeEecccc-------CCceeEEEECCCCCEEEEecC--CCcEEEEEecCCCCCCcchhhhhHhhhhcCCceeEEEEeec
Q psy18231 239 QPVRRWREH-------ASKVTCVKFNEDSSVVISGSQ--DNTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVK 309 (540)
Q Consensus 239 ~~~~~~~~h-------~~~v~~~~~~~~~~~l~s~~~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (540)
+.+..+.-. ......+.|+|||++++.+.. ++.|.+.|+.+.+.....
T Consensus 160 ~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I----------------------- 216 (426)
T 3c75_H 160 LPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRML----------------------- 216 (426)
T ss_dssp CEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEE-----------------------
T ss_pred cEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEE-----------------------
Confidence 988776421 234567899999999998864 578999999887620000
Q ss_pred ccccccccCceeeEEEeeeecccccceeeeeeccceeEEEeecccceecccccccccccchhhhhhcccccEEEEEec-C
Q psy18231 310 STKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEARDSITSVHVS-D 388 (540)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~-~ 388 (540)
.. .+ ...+... +
T Consensus 217 ---------------------------------------------------------------~v---~g-~~~~~p~g~ 229 (426)
T 3c75_H 217 ---------------------------------------------------------------DV---PD-CYHIFPASP 229 (426)
T ss_dssp ---------------------------------------------------------------EC---CS-EEEEEEEET
T ss_pred ---------------------------------------------------------------Ec---CC-ceeeccCCC
Confidence 00 00 0011111 1
Q ss_pred CeeEeeeCCCeEEEEeCCCCceEEe----ee--CCc-eEEEEEecCCcEEEeecCCCeEEEEeccccch--hhhhc----
Q psy18231 389 HEILTASLDCRIRRYDIRTGNLVTD----YV--GEP-IVDACFTRDCQCILTCSTDECLRLFDKATGEL--LEEYK---- 455 (540)
Q Consensus 389 ~~l~~~~~dg~i~iwd~~~~~~~~~----~~--~~~-i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~--~~~~~---- 455 (540)
..+++.+.||++.+.+..+++.... +. ..+ ...+.+++++..++..+..+.+.+.|...... +..+.
T Consensus 230 ~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~ 309 (426)
T 3c75_H 230 TVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTE 309 (426)
T ss_dssp TEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCT
T ss_pred cEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccc
Confidence 4456666788888788765554422 11 112 22457899988877777889999999865431 11111
Q ss_pred ------cCcCCcceEEEEecCCCCeEEEeeC----------CCcEEEEEecCCcceeEEEecccceeeeEEEEcCCCc-E
Q psy18231 456 ------GHKSGDFRIECCLDSKDSQIFCGSS----------DGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRK-H 518 (540)
Q Consensus 456 ------~~~~~v~~~~~~~s~~~~~l~s~s~----------dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~-~ 518 (540)
........+ +++++++.+++... ++.|.+.|..+.+.+.++.. ......++|+|||+ +
T Consensus 310 ~~i~~g~~p~g~~~v--a~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~v---g~~P~gia~spDg~~~ 384 (426)
T 3c75_H 310 AERADDWRPGGWQQT--AYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIEL---GHEIDSINVSQDAEPL 384 (426)
T ss_dssp TTGGGTEEECSSSCE--EEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEE---EEEECEEEECCSSSCE
T ss_pred cccccccccCCceee--EEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEEC---CCCcCeEEEccCCCEE
Confidence 011112224 78999888776642 35799999999999999973 23589999999998 7
Q ss_pred EEeec--CCeeEEEEcccc
Q psy18231 519 IMSAC--GNNVKLWTAEED 535 (540)
Q Consensus 519 l~s~~--d~~i~iw~~~~~ 535 (540)
++++. ++.|.++|+.+.
T Consensus 385 lyv~n~~s~~VsVID~~t~ 403 (426)
T 3c75_H 385 LYALSAGTQTLHIYDAATG 403 (426)
T ss_dssp EEEEETTTTEEEEEETTTC
T ss_pred EEEEcCCCCeEEEEECCCC
Confidence 77776 899999998764
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 | Back alignment and structure |
|---|
Probab=99.63 E-value=2.8e-13 Score=124.31 Aligned_cols=215 Identities=13% Similarity=0.209 Sum_probs=151.5
Q ss_pred cccceeeeecccccce-ee-------eeecCeEEEEe-CCCCCEEEEeeC-CCcEEEEcCCCCeeEEEeec-CCcceeEE
Q psy18231 144 PKEWSIRVYRPLTVNR-EL-------FVLSGLMHTRF-PVDGSYCLTCGS-DKKIKLWNPYRNLLLKTYGG-HAHEVNDA 212 (540)
Q Consensus 144 ~~~~~i~~~~~~~~~~-~~-------~h~~~v~~v~~-spdg~~lat~~~-dg~i~iwd~~~~~~~~~~~~-h~~~v~~l 212 (540)
..+..|.+|+...... .. .|...+..+++ .++++++++... ++.|.+|| .+++.+..+.. +...+.++
T Consensus 48 ~~~~~i~~~d~~g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d-~~g~~~~~~~~~~~~~~~~i 126 (286)
T 1q7f_A 48 TNNHRIQIFDKEGRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYN-QYGQFVRKFGATILQHPRGV 126 (286)
T ss_dssp GGGTEEEEECTTSCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEEC-TTSCEEEEECTTTCSCEEEE
T ss_pred CCCCEEEEECCCCcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEEC-CCCcEEEEecCccCCCceEE
Confidence 4456677777553221 11 23457899999 578876666543 89999999 67777776643 44678999
Q ss_pred EEeeCCCeEEEeeCCCeEEEEEcCCCceeEecc--ccCCceeEEEECCCCCEEEEecCCCcEEEEEecCCCCCCcchhhh
Q psy18231 213 TAACDSSQIASGASDKSVILWEVTTGQPVRRWR--EHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQVRCL 290 (540)
Q Consensus 213 ~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~--~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~ 290 (540)
+++|+++++++...++.|.+||. +++.+..+. .+...+..++++++++++++.+.++.|.+||...... .
T Consensus 127 ~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~~---~---- 198 (286)
T 1q7f_A 127 TVDNKGRIIVVECKVMRVIIFDQ-NGNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYEGQYL---R---- 198 (286)
T ss_dssp EECTTSCEEEEETTTTEEEEECT-TSCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETTCCEE---E----
T ss_pred EEeCCCCEEEEECCCCEEEEEcC-CCCEEEEeCCCCccCCcEEEEECCCCCEEEEECCCCEEEEEcCCCCEE---E----
Confidence 99999998888888899999996 466655553 3456789999999999888878889999999643210 0
Q ss_pred hHhhhhcCCceeEEEEeecccccccccCceeeEEEeeeecccccceeeeeeccceeEEEeecccceecccccccccccch
Q psy18231 291 NEALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSC 370 (540)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (540)
.+
T Consensus 199 ----------------------------------------------------------~~-------------------- 200 (286)
T 1q7f_A 199 ----------------------------------------------------------QI-------------------- 200 (286)
T ss_dssp ----------------------------------------------------------EE--------------------
T ss_pred ----------------------------------------------------------EE--------------------
Confidence 00
Q ss_pred hhhhhcccccEEEEEecC--CeeEeeeCCC-eEEEEeCCCCceEEeeeC----CceEEEEEecCCcEEEeecCCCeEEEE
Q psy18231 371 FQALKEARDSITSVHVSD--HEILTASLDC-RIRRYDIRTGNLVTDYVG----EPIVDACFTRDCQCILTCSTDECLRLF 443 (540)
Q Consensus 371 ~~~~~~~~~~v~~l~~~~--~~l~~~~~dg-~i~iwd~~~~~~~~~~~~----~~i~~~~~sp~~~~l~~~~~dg~i~i~ 443 (540)
...++...+..+++++ .++++...++ .|.+||.. ++.+..+.. ..+..++++|+|+++++ +.|+.|++|
T Consensus 201 --~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~~i~~~~~g~l~vs-~~~~~v~v~ 276 (286)
T 1q7f_A 201 --GGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQD-GQLISALESKVKHAQCFDVALMDDGSVVLA-SKDYRLYIY 276 (286)
T ss_dssp --SCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTT-SCEEEEEEESSCCSCEEEEEEETTTEEEEE-ETTTEEEEE
T ss_pred --ccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECCC-CCEEEEEcccCCCCcceeEEECCCCcEEEE-CCCCeEEEE
Confidence 0011224567888887 5555555665 99999964 666655543 24789999999987777 578999999
Q ss_pred eccccc
Q psy18231 444 DKATGE 449 (540)
Q Consensus 444 d~~~~~ 449 (540)
+.....
T Consensus 277 ~~~~~~ 282 (286)
T 1q7f_A 277 RYVQLA 282 (286)
T ss_dssp ECSCCC
T ss_pred Eccccc
Confidence 986543
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} | Back alignment and structure |
|---|
Probab=99.62 E-value=2.7e-12 Score=118.50 Aligned_cols=273 Identities=10% Similarity=-0.014 Sum_probs=186.8
Q ss_pred ecCeEEEEeCCCCCEEEEeeCCCcEEEEcCCCCeeEE-EeecCCcceeEEEEeeCCCeEEEeeCCCeEEEEEcCCCceeE
Q psy18231 164 LSGLMHTRFPVDGSYCLTCGSDKKIKLWNPYRNLLLK-TYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPVR 242 (540)
Q Consensus 164 ~~~v~~v~~spdg~~lat~~~dg~i~iwd~~~~~~~~-~~~~h~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~ 242 (540)
...+.+++++++|+..++...++.|.+||.. ++... .+..+...+.++++.++++++++...++.|..||.. ++...
T Consensus 19 ~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~~~ 96 (300)
T 2qc5_A 19 DSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGFTE 96 (300)
T ss_dssp TCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEE
T ss_pred CCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceEEEECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-CCeEE
Confidence 3567899999999987777678999999987 55433 223334678999999999988877778899999987 65432
Q ss_pred -eccccCCceeEEEECCCCCEEEEecCCCcEEEEEecCCCCCCcchhhhhHhhhhcCCceeEEEEeecccccccccCcee
Q psy18231 243 -RWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHLSNGLLT 321 (540)
Q Consensus 243 -~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (540)
.+......+..+++.++++++++...++.|..+|.. ++....
T Consensus 97 ~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~------------------------------------ 139 (300)
T 2qc5_A 97 YPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEY------------------------------------ 139 (300)
T ss_dssp EECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEE------------------------------------
T ss_pred ecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEc------------------------------------
Confidence 222344678999999999888877767888888865 331000
Q ss_pred eEEEeeeecccccceeeeeeccceeEEEeecccceecccccccccccchhhhhhcccccEEEEEecC--CeeEeeeCCCe
Q psy18231 322 KLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEARDSITSVHVSD--HEILTASLDCR 399 (540)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~--~~l~~~~~dg~ 399 (540)
.+......+.++++++ ++.++...++.
T Consensus 140 ---------------------------------------------------~~~~~~~~~~~i~~d~~g~l~v~~~~~~~ 168 (300)
T 2qc5_A 140 ---------------------------------------------------DLPNKGSYPAFITLGSDNALWFTENQNNS 168 (300)
T ss_dssp ---------------------------------------------------ECSSTTCCEEEEEECTTSSEEEEETTTTE
T ss_pred ---------------------------------------------------cCCCCCCCceeEEECCCCCEEEEecCCCe
Confidence 0001123566788877 44444445788
Q ss_pred EEEEeCCCCceEEee-e--CCceEEEEEecCCcEEEeecCCCeEEEEeccccchhhh-hccCcCCcceEEEEecCCCCeE
Q psy18231 400 IRRYDIRTGNLVTDY-V--GEPIVDACFTRDCQCILTCSTDECLRLFDKATGELLEE-YKGHKSGDFRIECCLDSKDSQI 475 (540)
Q Consensus 400 i~iwd~~~~~~~~~~-~--~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~-~~~~~~~v~~~~~~~s~~~~~l 475 (540)
|..||. +++..... . ...+..++++++|++.++....+.|.+||. +++.... +..+...+..+ +++++|++.
T Consensus 169 i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i--~~d~~g~l~ 244 (300)
T 2qc5_A 169 IGRITN-TGKLEEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITT-TGEISEYDIPTPNARPHAI--TAGKNSEIW 244 (300)
T ss_dssp EEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEE--EECSTTCEE
T ss_pred EEEECC-CCcEEEeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcC-CCcEEEEECCCCCCCceEE--EECCCCCEE
Confidence 999998 55544321 1 246889999999988877777788999998 4443221 22223334444 889999877
Q ss_pred EEeeCCCcEEEEEecCCcceeEEEecccceeeeEEEEcCCCcEEEeecCCeeEEEEcc
Q psy18231 476 FCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAE 533 (540)
Q Consensus 476 ~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~d~~i~iw~~~ 533 (540)
++...++.|..||. +++. ..+........+.+++++++|++.++... .|..++.+
T Consensus 245 v~~~~~~~i~~~~~-~g~~-~~~~~~~~~~~~~~i~~~~~g~l~v~~~~-~i~~~~p~ 299 (300)
T 2qc5_A 245 FTEWGANQIGRITN-DNTI-QEYQLQTENAEPHGITFGKDGSVWFALKC-KIGKLNLN 299 (300)
T ss_dssp EEETTTTEEEEECT-TSCE-EEEECCSTTCCCCCEEECTTSCEEEECSS-EEEEEEEC
T ss_pred EeccCCCeEEEECC-CCcE-EEEECCccCCccceeEeCCCCCEEEEccC-ceEEeCCC
Confidence 77667789999997 4443 33432234567899999999987666554 66666653
|
| >3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=1.2e-13 Score=129.42 Aligned_cols=215 Identities=10% Similarity=0.112 Sum_probs=155.7
Q ss_pred cceeeeecccccceee----eeecCeEEEEeCCCCCEEEEeeCCCcEEEEcCCCCe-eEEEe---------ecCCcceeE
Q psy18231 146 EWSIRVYRPLTVNREL----FVLSGLMHTRFPVDGSYCLTCGSDKKIKLWNPYRNL-LLKTY---------GGHAHEVND 211 (540)
Q Consensus 146 ~~~i~~~~~~~~~~~~----~h~~~v~~v~~spdg~~lat~~~dg~i~iwd~~~~~-~~~~~---------~~h~~~v~~ 211 (540)
+..|.+|+..+..... .+......++++|+|+++++...++.|++||..... .+..+ .++......
T Consensus 68 ~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ 147 (329)
T 3fvz_A 68 EDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTD 147 (329)
T ss_dssp SCCEEEECTTTCCEEEEECTTTCSSEEEEEECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEE
T ss_pred CCcEEEEECCCCeEEeccCCCccCCceEEEECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcE
Confidence 4567888876544221 234578999999999988888889999999975442 45555 234557889
Q ss_pred EEEee-CCCeEEEee-CCCeEEEEEcCCCceeEecccc----------CCceeEEEECCC-CCEEEEecCCCcEEEEEec
Q psy18231 212 ATAAC-DSSQIASGA-SDKSVILWEVTTGQPVRRWREH----------ASKVTCVKFNED-SSVVISGSQDNTVMMWDVK 278 (540)
Q Consensus 212 l~~sp-~~~~l~s~s-~dg~i~iwd~~~~~~~~~~~~h----------~~~v~~~~~~~~-~~~l~s~~~dg~i~iwd~~ 278 (540)
++++| ++.++++.+ .++.|++|| .+++.+..+... -.....++++|+ +.++++...++.|++||..
T Consensus 148 ia~~~~~g~lyv~d~~~~~~I~~~~-~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~ 226 (329)
T 3fvz_A 148 VAVEPSTGAVFVSDGYCNSRIVQFS-PSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTD 226 (329)
T ss_dssp EEECTTTCCEEEEECSSCCEEEEEC-TTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred EEEeCCCCeEEEEeCCCCCeEEEEc-CCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECC
Confidence 99999 788888886 689999999 577777766432 234899999998 7777787888999999988
Q ss_pred CCCCCCcchhhhhHhhhhcCCceeEEEEeecccccccccCceeeEEEeeeecccccceeeeeeccceeEEEeecccceec
Q psy18231 279 SRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQI 358 (540)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (540)
+++.....
T Consensus 227 ~G~~~~~~------------------------------------------------------------------------ 234 (329)
T 3fvz_A 227 TKEFVREI------------------------------------------------------------------------ 234 (329)
T ss_dssp TCCEEEEE------------------------------------------------------------------------
T ss_pred CCcEEEEE------------------------------------------------------------------------
Confidence 66510000
Q ss_pred ccccccccccchhhhhhcccccEEEEEecCC--------eeEeeeCCCeEEEEeCCCCceEEeee---C--CceEEEEEe
Q psy18231 359 GDVTPISIHNSCFQALKEARDSITSVHVSDH--------EILTASLDCRIRRYDIRTGNLVTDYV---G--EPIVDACFT 425 (540)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~--------~l~~~~~dg~i~iwd~~~~~~~~~~~---~--~~i~~~~~s 425 (540)
....+...+.+++++|. ..++...+..|++||..+++.+..+. . .....++++
T Consensus 235 --------------~~~~~~~~~~~~~~~pg~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~ 300 (329)
T 3fvz_A 235 --------------KHASFGRNVFAISYIPGFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVAS 300 (329)
T ss_dssp --------------CCTTTTTCEEEEEEETTEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEEC
T ss_pred --------------eccccCCCcceeeecCCEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEEC
Confidence 00122234445555552 23333445689999999999988874 2 468999999
Q ss_pred cCCcEEEeecCCCeEEEEeccc
Q psy18231 426 RDCQCILTCSTDECLRLFDKAT 447 (540)
Q Consensus 426 p~~~~l~~~~~dg~i~i~d~~~ 447 (540)
|+|.++++...++.|++|++..
T Consensus 301 ~dG~lyvad~~~~~I~~~~~~~ 322 (329)
T 3fvz_A 301 EDGTVYIGDAHTNTVWKFTLTE 322 (329)
T ss_dssp TTSEEEEEESSSCCEEEEEEEE
T ss_pred CCCCEEEEECCCCEEEEEeCCc
Confidence 9999888888999999999754
|
| >1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... | Back alignment and structure |
|---|
Probab=99.60 E-value=9.4e-13 Score=122.61 Aligned_cols=240 Identities=9% Similarity=0.067 Sum_probs=160.5
Q ss_pred CCcceeEEEEeeCCCeEEE-------eeCCCeEEEEEcCCCceeEecc----ccCCceeEEEECCC-CCEEEEecCCCcE
Q psy18231 205 HAHEVNDATAACDSSQIAS-------GASDKSVILWEVTTGQPVRRWR----EHASKVTCVKFNED-SSVVISGSQDNTV 272 (540)
Q Consensus 205 h~~~v~~l~~sp~~~~l~s-------~s~dg~i~iwd~~~~~~~~~~~----~h~~~v~~~~~~~~-~~~l~s~~~dg~i 272 (540)
.-....+++|++++.++++ ...++.|.+||..+++...... ++...+..++++++ ++++++.. .+.|
T Consensus 16 ~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~-~~~l 94 (314)
T 1pjx_A 16 DIPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADM-RLGL 94 (314)
T ss_dssp CCTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEET-TTEE
T ss_pred cCCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEEEC-CCCE
Confidence 3445688999999988888 6778999999988887543221 25567899999999 76555544 4478
Q ss_pred EEEEecCCCCCCc-chhhhhHhhhhcCCceeEEEEeecccccccccCceeeEEEeeeecccccceeeeeeccceeEEEee
Q psy18231 273 MMWDVKSRSHHPI-QVRCLNEALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLD 351 (540)
Q Consensus 273 ~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (540)
.+||.. ++.... . ..
T Consensus 95 ~~~d~~-g~~~~~~~--~~------------------------------------------------------------- 110 (314)
T 1pjx_A 95 LVVQTD-GTFEEIAK--KD------------------------------------------------------------- 110 (314)
T ss_dssp EEEETT-SCEEECCS--BC-------------------------------------------------------------
T ss_pred EEEeCC-CCEEEEEe--cc-------------------------------------------------------------
Confidence 889877 441100 0 00
Q ss_pred cccceecccccccccccchhhhhhcccccEEEEEecC--CeeEeeeCC---------------CeEEEEeCCCCceEEee
Q psy18231 352 FLGSTQIGDVTPISIHNSCFQALKEARDSITSVHVSD--HEILTASLD---------------CRIRRYDIRTGNLVTDY 414 (540)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~--~~l~~~~~d---------------g~i~iwd~~~~~~~~~~ 414 (540)
........+.++++++ .++++...+ +.|..||.. ++.....
T Consensus 111 ---------------------~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~ 168 (314)
T 1pjx_A 111 ---------------------SEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVD 168 (314)
T ss_dssp ---------------------TTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEE
T ss_pred ---------------------CCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEec
Confidence 0001123456677776 344443333 567778776 5543332
Q ss_pred e-CCceEEEEEe----cCCcEEEee-cCCCeEEEEecc-ccc-----hhhhhccCc-CCcceEEEEecCCCCeEEEeeCC
Q psy18231 415 V-GEPIVDACFT----RDCQCILTC-STDECLRLFDKA-TGE-----LLEEYKGHK-SGDFRIECCLDSKDSQIFCGSSD 481 (540)
Q Consensus 415 ~-~~~i~~~~~s----p~~~~l~~~-~~dg~i~i~d~~-~~~-----~~~~~~~~~-~~v~~~~~~~s~~~~~l~s~s~d 481 (540)
. ......++++ |+++.++++ ..++.|.+||.. +++ ....+..+. .....+ +++++|+++++...+
T Consensus 169 ~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i--~~d~~G~l~v~~~~~ 246 (314)
T 1pjx_A 169 TAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGM--DFDEDNNLLVANWGS 246 (314)
T ss_dssp EEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEE--EEBTTCCEEEEEETT
T ss_pred cCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCce--EECCCCCEEEEEcCC
Confidence 2 2456889999 999765544 567899999976 343 222333332 233344 889999988888788
Q ss_pred CcEEEEEecCCcceeEEEecccceeeeEEEEcCCCcEEE-eec-CCeeEEEEcccc
Q psy18231 482 GKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIM-SAC-GNNVKLWTAEED 535 (540)
Q Consensus 482 g~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~-s~~-d~~i~iw~~~~~ 535 (540)
+.|.+||..+++.+..+. .+...+.+++|+|+++.|. +.. ++.|..|+++..
T Consensus 247 ~~i~~~d~~~g~~~~~~~--~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~~ 300 (314)
T 1pjx_A 247 SHIEVFGPDGGQPKMRIR--CPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQRN 300 (314)
T ss_dssp TEEEEECTTCBSCSEEEE--CSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSSC
T ss_pred CEEEEEcCCCCcEeEEEe--CCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCCC
Confidence 999999988788777776 5667899999999999554 444 789999998753
|
| >2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H* | Back alignment and structure |
|---|
Probab=99.59 E-value=3.8e-12 Score=120.67 Aligned_cols=259 Identities=9% Similarity=-0.004 Sum_probs=169.7
Q ss_pred eeeeecccccceeee-eecCeEEEEeCCCCCEEEEee----------CCCcEEEEcCCCCeeEEEeecC-------Ccce
Q psy18231 148 SIRVYRPLTVNRELF-VLSGLMHTRFPVDGSYCLTCG----------SDKKIKLWNPYRNLLLKTYGGH-------AHEV 209 (540)
Q Consensus 148 ~i~~~~~~~~~~~~~-h~~~v~~v~~spdg~~lat~~----------~dg~i~iwd~~~~~~~~~~~~h-------~~~v 209 (540)
.+.+++..+...... ..+....++|||||++|+++. .++.|.+||..+.+.+.++... ...-
T Consensus 48 ~v~v~D~~t~~~~~~i~~g~~p~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p 127 (373)
T 2mad_H 48 QQWVLDAGSGSILGHVNGGFLPNPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYS 127 (373)
T ss_pred EEEEEECCCCeEEEEecCCCCCCeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCc
Confidence 567777665442211 122223999999999999875 3678999999998888776432 1234
Q ss_pred eEEEEeeCCCeEEEeeC--CCeEEEEEcCCCceeEe-ccccCCceeEEEECCCC-CEEEEecCCCcEEEEEecCCCCCCc
Q psy18231 210 NDATAACDSSQIASGAS--DKSVILWEVTTGQPVRR-WREHASKVTCVKFNEDS-SVVISGSQDNTVMMWDVKSRSHHPI 285 (540)
Q Consensus 210 ~~l~~sp~~~~l~s~s~--dg~i~iwd~~~~~~~~~-~~~h~~~v~~~~~~~~~-~~l~s~~~dg~i~iwd~~~~~~~~~ 285 (540)
..++|+|||++|+.++. ++.|.++| .+++.+.. +... . ++.+.|++ ..+++.+.||.+.++|. +++....
T Consensus 128 ~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~-~---~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~ 201 (373)
T 2mad_H 128 WMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSP-T---CYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGA 201 (373)
T ss_pred cceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCC-c---eEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEE
Confidence 57999999999998874 57899999 99998877 6432 2 24455554 45667778999999999 6652100
Q ss_pred chhhhhHhhhhcCCceeEEEEeecccccccccCceeeEEEeeeecccccceeeeeeccceeEEEeecccceecccccccc
Q psy18231 286 QVRCLNEALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPIS 365 (540)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 365 (540)
. ...
T Consensus 202 ~--~~~-------------------------------------------------------------------------- 205 (373)
T 2mad_H 202 G--LVG-------------------------------------------------------------------------- 205 (373)
T ss_pred E--ecc--------------------------------------------------------------------------
Confidence 0 000
Q ss_pred cccchhhhhhcccccE-EEEEecC--CeeEeeeCCCeEEEEeCCCCc--eEEeee------------CCceEEEEEecCC
Q psy18231 366 IHNSCFQALKEARDSI-TSVHVSD--HEILTASLDCRIRRYDIRTGN--LVTDYV------------GEPIVDACFTRDC 428 (540)
Q Consensus 366 ~~~~~~~~~~~~~~~v-~~l~~~~--~~l~~~~~dg~i~iwd~~~~~--~~~~~~------------~~~i~~~~~sp~~ 428 (540)
. .. ....++ ....+.+ ..++..+.++.+.+.|+.++. .+..+. ......+.++|++
T Consensus 206 ----~--~~-~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~ 278 (373)
T 2mad_H 206 ----A--ML-TAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSS 278 (373)
T ss_pred ----c--cc-cCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCC
Confidence 0 00 000000 1111222 233333366788888886542 222221 1234457899999
Q ss_pred cEEEeecC----------CCeEEEEeccccchhhhhccCcCCcceEEEEecCCCC-eEEEee-CCCcEEEEEecCCccee
Q psy18231 429 QCILTCST----------DECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDS-QIFCGS-SDGKIYKWQLVDSSQIS 496 (540)
Q Consensus 429 ~~l~~~~~----------dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~s~~~~-~l~s~s-~dg~i~iwd~~~~~~~~ 496 (540)
+.++++.. ++.|.++|..+++.+.++.... ....+ +|+|||+ .++++. .++.|.+||+.+++.+.
T Consensus 279 ~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~g~-~p~~i--~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~vv~ 355 (373)
T 2mad_H 279 DGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLGH-DVDAI--SVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQ 355 (373)
T ss_pred CEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEECCC-CcCeE--EECCCCCeEEEEEcCCCCeEEEEECCCCCEEe
Confidence 88877653 3579999999999988885433 34555 8999999 777777 58999999999999988
Q ss_pred EE
Q psy18231 497 TL 498 (540)
Q Consensus 497 ~~ 498 (540)
.+
T Consensus 356 ~i 357 (373)
T 2mad_H 356 ST 357 (373)
T ss_pred ee
Confidence 84
|
| >1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... | Back alignment and structure |
|---|
Probab=99.59 E-value=1.2e-12 Score=121.98 Aligned_cols=234 Identities=10% Similarity=0.144 Sum_probs=157.7
Q ss_pred ecCeEEEEeCCCCCEEEE-------eeCCCcEEEEcCCCCeeEEEee----cCCcceeEEEEeeC-CCeEEEeeCCCeEE
Q psy18231 164 LSGLMHTRFPVDGSYCLT-------CGSDKKIKLWNPYRNLLLKTYG----GHAHEVNDATAACD-SSQIASGASDKSVI 231 (540)
Q Consensus 164 ~~~v~~v~~spdg~~lat-------~~~dg~i~iwd~~~~~~~~~~~----~h~~~v~~l~~sp~-~~~l~s~s~dg~i~ 231 (540)
.....+++|+++|+++++ +..++.|.+||..+++...... ++...+.+++++++ ++++++.. .+.|.
T Consensus 17 ~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~-~~~l~ 95 (314)
T 1pjx_A 17 IPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADM-RLGLL 95 (314)
T ss_dssp CTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEET-TTEEE
T ss_pred CCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEEEC-CCCEE
Confidence 345789999999988887 6778999999988877543222 24567899999999 76555544 44799
Q ss_pred EEEcCCCceeEe-ccc----cCCceeEEEECCCCCEEEEecCC---------------CcEEEEEecCCCCCCcchhhhh
Q psy18231 232 LWEVTTGQPVRR-WRE----HASKVTCVKFNEDSSVVISGSQD---------------NTVMMWDVKSRSHHPIQVRCLN 291 (540)
Q Consensus 232 iwd~~~~~~~~~-~~~----h~~~v~~~~~~~~~~~l~s~~~d---------------g~i~iwd~~~~~~~~~~~~~~~ 291 (540)
+||.. ++.... ... +...+.+++++++|++.++...+ +.|..|+.. ++. .
T Consensus 96 ~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~---~----- 165 (314)
T 1pjx_A 96 VVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQM---I----- 165 (314)
T ss_dssp EEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCE---E-----
T ss_pred EEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCE---E-----
Confidence 99988 765433 221 22458899999999877776544 234444322 110 0
Q ss_pred HhhhhcCCceeEEEEeecccccccccCceeeEEEeeeecccccceeeeeeccceeEEEeecccceecccccccccccchh
Q psy18231 292 EALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCF 371 (540)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (540)
T Consensus 166 -------------------------------------------------------------------------------- 165 (314)
T 1pjx_A 166 -------------------------------------------------------------------------------- 165 (314)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhhcccccEEEEEec----C--CeeEee-eCCCeEEEEeCC-CCce-----EEeeeC---CceEEEEEecCCcEEEeec
Q psy18231 372 QALKEARDSITSVHVS----D--HEILTA-SLDCRIRRYDIR-TGNL-----VTDYVG---EPIVDACFTRDCQCILTCS 435 (540)
Q Consensus 372 ~~~~~~~~~v~~l~~~----~--~~l~~~-~~dg~i~iwd~~-~~~~-----~~~~~~---~~i~~~~~sp~~~~l~~~~ 435 (540)
.+..+......++++ + +.++++ ..++.|.+||.+ +++. ...+.. .....++++++|+++++..
T Consensus 166 -~~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~ 244 (314)
T 1pjx_A 166 -QVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANW 244 (314)
T ss_dssp -EEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEE
T ss_pred -EeccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEc
Confidence 000111234566777 6 344444 567899999986 4432 222222 3578899999999888887
Q ss_pred CCCeEEEEeccccchhhhhccCcCCcceEEEEecCCCCeEE-EeeCCCcEEEEEecC
Q psy18231 436 TDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIF-CGSSDGKIYKWQLVD 491 (540)
Q Consensus 436 ~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~s~~~~~l~-s~s~dg~i~iwd~~~ 491 (540)
.++.|.+||..+++.+..+..+...+..+ +++++++.|+ +...++.|..|++..
T Consensus 245 ~~~~i~~~d~~~g~~~~~~~~~~~~~~~i--~~~~dg~~l~v~~~~~~~l~~~~~~~ 299 (314)
T 1pjx_A 245 GSSHIEVFGPDGGQPKMRIRCPFEKPSNL--HFKPQTKTIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp TTTEEEEECTTCBSCSEEEECSSSCEEEE--EECTTSSEEEEEETTTTEEEEEECSS
T ss_pred CCCEEEEEcCCCCcEeEEEeCCCCCceeE--EECCCCCEEEEEeCCCCeEEEEeCCC
Confidence 88999999998787776666665556555 7899999554 555668899999764
|
| >1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} | Back alignment and structure |
|---|
Probab=99.58 E-value=1.5e-13 Score=143.70 Aligned_cols=240 Identities=13% Similarity=0.029 Sum_probs=153.4
Q ss_pred eecCeEEEEeCCCCCEEEEeeCC-----CcEEEEcCCCCeeEEEeecCCcceeEEEEeeCCCeEEEeeCCCe--------
Q psy18231 163 VLSGLMHTRFPVDGSYCLTCGSD-----KKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKS-------- 229 (540)
Q Consensus 163 h~~~v~~v~~spdg~~lat~~~d-----g~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~dg~-------- 229 (540)
|...+..++|||||++||.++.+ .+|++||+.+++.+... .+...+..++|+|| +.|+.++.++.
T Consensus 161 ~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~-~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~ 238 (741)
T 1yr2_A 161 GATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADE-LKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQA 238 (741)
T ss_dssp --EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEE-EEEEESCCCEESTT-SEEEEEECCCC--------
T ss_pred CCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCcc-CCCceeccEEEECC-CEEEEEEecCccccccccc
Confidence 44578899999999999976543 46999999999876542 22333467899999 98988877654
Q ss_pred ------EEEEEcCCCc----eeEeccccCCceeEEEECCCCCEEEEecCCC-----cEEEEEecCCCCCCcchhhhhHhh
Q psy18231 230 ------VILWEVTTGQ----PVRRWREHASKVTCVKFNEDSSVVISGSQDN-----TVMMWDVKSRSHHPIQVRCLNEAL 294 (540)
Q Consensus 230 ------i~iwd~~~~~----~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg-----~i~iwd~~~~~~~~~~~~~~~~~~ 294 (540)
|.+|++.++. .+.....+...+..+.|+|||++|+..+.++ .|.+||+.++......
T Consensus 239 ~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~-------- 310 (741)
T 1yr2_A 239 LNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVT-------- 310 (741)
T ss_dssp CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCE--------
T ss_pred CCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccE--------
Confidence 8999997765 2222233444688999999999888777544 7899998765210000
Q ss_pred hhcCCceeEEEEeecccccccccCceeeEEEeeeecccccceeeeeeccceeEEEeecccceecccccccccccchhhhh
Q psy18231 295 KEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQAL 374 (540)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (540)
.+
T Consensus 311 ------------------------------------------------------------------------------~l 312 (741)
T 1yr2_A 311 ------------------------------------------------------------------------------AL 312 (741)
T ss_dssp ------------------------------------------------------------------------------EE
T ss_pred ------------------------------------------------------------------------------Ee
Confidence 00
Q ss_pred hcccccEEE-EEecCCeeEeeeC----CCeEEEEeCCCCc-eEEee-eC--CceEEEEEecCCcEEEeecCCCeEEEEec
Q psy18231 375 KEARDSITS-VHVSDHEILTASL----DCRIRRYDIRTGN-LVTDY-VG--EPIVDACFTRDCQCILTCSTDECLRLFDK 445 (540)
Q Consensus 375 ~~~~~~v~~-l~~~~~~l~~~~~----dg~i~iwd~~~~~-~~~~~-~~--~~i~~~~~sp~~~~l~~~~~dg~i~i~d~ 445 (540)
..+...+.. +....+.|+..+. ++.|.+||+.++. ....+ .. ..+..++++ ++.++++...|+..+||.+
T Consensus 313 ~~~~~~~~~~~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~ 391 (741)
T 1yr2_A 313 IPDLKAQWDFVDGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA-GNRLFASYIHDAKSQVLAF 391 (741)
T ss_dssp ECSSSSCEEEEEEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE-BTEEEEEEEETTEEEEEEE
T ss_pred cCCCCceEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEE
Confidence 111111111 1212255555544 4569999998752 22232 22 346677777 6677888888988777755
Q ss_pred c-ccchhhhhccC-cCCcceEEEEecCCCCeEEE----eeCCCcEEEEEecCCc
Q psy18231 446 A-TGELLEEYKGH-KSGDFRIECCLDSKDSQIFC----GSSDGKIYKWQLVDSS 493 (540)
Q Consensus 446 ~-~~~~~~~~~~~-~~~v~~~~~~~s~~~~~l~s----~s~dg~i~iwd~~~~~ 493 (540)
. +++.+..+..+ ...+..+ .++|+++.|+. ....++|++||+.+++
T Consensus 392 ~~~g~~~~~l~~~~~~~v~~~--~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 443 (741)
T 1yr2_A 392 DLDGKPAGAVSLPGIGSASGL--SGRPGDRHAYLSFSSFTQPATVLALDPATAK 443 (741)
T ss_dssp ETTSCEEEECBCSSSCEEEEE--ECCBTCSCEEEEEEETTEEEEEEEEETTTTE
T ss_pred eCCCCceeeccCCCCeEEEEe--ecCCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence 4 35444555432 3334444 78899887662 3345789999988775
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=1.3e-11 Score=113.78 Aligned_cols=236 Identities=13% Similarity=0.082 Sum_probs=165.9
Q ss_pred ecCCcceeEEEEeeCCCeEEEeeCCCeEEEEEcCCCceeEe-ccccCCceeEEEECCCCCEEEEecCCCcEEEEEecCCC
Q psy18231 203 GGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPVRR-WREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRS 281 (540)
Q Consensus 203 ~~h~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~-~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~ 281 (540)
..+...+.++++.++|+++++...++.|.+||.. ++.... ...+...+..+++++++.+.++...++.|..||.. ++
T Consensus 11 ~~~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~ 88 (299)
T 2z2n_A 11 TNQDTGPYGITVSDKGKVWITQHKANMISCINLD-GKITEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKK-GI 88 (299)
T ss_dssp CSSSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SC
T ss_pred CCcCCCccceEECCCCCEEEEecCCCcEEEEcCC-CCeEEecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCC-Cc
Confidence 3455789999999999988877778999999987 554332 22345779999999999988877767889988864 22
Q ss_pred CCCcchhhhhHhhhhcCCceeEEEEeecccccccccCceeeEEEeeeecccccceeeeeeccceeEEEeecccceecccc
Q psy18231 282 HHPIQVRCLNEALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDV 361 (540)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (540)
... .
T Consensus 89 ~~~-~--------------------------------------------------------------------------- 92 (299)
T 2z2n_A 89 IKE-Y--------------------------------------------------------------------------- 92 (299)
T ss_dssp EEE-E---------------------------------------------------------------------------
T ss_pred EEE-E---------------------------------------------------------------------------
Confidence 000 0
Q ss_pred cccccccchhhhhhcccccEEEEEecC--CeeEeeeCCCeEEEEeCCCCceEEee-e--CCceEEEEEecCCcEEEeecC
Q psy18231 362 TPISIHNSCFQALKEARDSITSVHVSD--HEILTASLDCRIRRYDIRTGNLVTDY-V--GEPIVDACFTRDCQCILTCST 436 (540)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~v~~l~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~-~--~~~i~~~~~sp~~~~l~~~~~ 436 (540)
.+......+.++++++ .++++...++.|..||. +++..... . ...+..++++++|+++++...
T Consensus 93 -----------~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~ 160 (299)
T 2z2n_A 93 -----------TLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGSDNALWFTENQ 160 (299)
T ss_dssp -----------ECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSCEEEEETT
T ss_pred -----------eCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcCCCCEEEEeCC
Confidence 0001223567788877 44444556789999998 55443222 2 256899999999988888777
Q ss_pred CCeEEEEeccccchhhh-hccCcCCcceEEEEecCCCCeEEEeeCCCcEEEEEecCCcceeEEEecccceeeeEEEEcCC
Q psy18231 437 DECLRLFDKATGELLEE-YKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPT 515 (540)
Q Consensus 437 dg~i~i~d~~~~~~~~~-~~~~~~~v~~~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d 515 (540)
++.|..||. +++.... +..+...+..+ +++++|++.++...++.|.+||. +++.. .+....+...+.+++++++
T Consensus 161 ~~~i~~~~~-~g~~~~~~~~~~~~~~~~i--~~~~~g~l~v~~~~~~~i~~~~~-~g~~~-~~~~~~~~~~~~~i~~~~~ 235 (299)
T 2z2n_A 161 NNAIGRITE-SGDITEFKIPTPASGPVGI--TKGNDDALWFVEIIGNKIGRITT-SGEIT-EFKIPTPNARPHAITAGAG 235 (299)
T ss_dssp TTEEEEECT-TCCEEEEECSSTTCCEEEE--EECTTSSEEEEETTTTEEEEECT-TCCEE-EEECSSTTCCEEEEEECST
T ss_pred CCEEEEEcC-CCcEEEeeCCCCCCcceeE--EECCCCCEEEEccCCceEEEECC-CCcEE-EEECCCCCCCceeEEECCC
Confidence 889999998 6654321 22222333444 88999987777777889999998 66543 3432245567899999999
Q ss_pred CcEEEeec-CCeeEEEEcc
Q psy18231 516 RKHIMSAC-GNNVKLWTAE 533 (540)
Q Consensus 516 ~~~l~s~~-d~~i~iw~~~ 533 (540)
|+++++.. ++.|..|+..
T Consensus 236 g~l~v~~~~~~~i~~~d~~ 254 (299)
T 2z2n_A 236 IDLWFTEWGANKIGRLTSN 254 (299)
T ss_dssp TCEEEEETTTTEEEEEETT
T ss_pred CCEEEeccCCceEEEECCC
Confidence 99887776 8899999874
|
| >3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=99.52 E-value=1e-11 Score=119.47 Aligned_cols=234 Identities=12% Similarity=0.069 Sum_probs=159.6
Q ss_pred cceeEEEEeeCCCeEEEeeCCCeEEEEEcCCCceeEeccccCCceeEEEECCCCCEEEEecCCC--cEEEEEecCCCCCC
Q psy18231 207 HEVNDATAACDSSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDN--TVMMWDVKSRSHHP 284 (540)
Q Consensus 207 ~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg--~i~iwd~~~~~~~~ 284 (540)
.....++|+++++++++...++.|++||..+++....... ..... ++|+++++.|+++..++ .|.+|+........
T Consensus 131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~-~~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~ 208 (409)
T 3hrp_A 131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPG-FKGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPT 208 (409)
T ss_dssp CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEET-CCBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCEE
T ss_pred CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeecc-CCCCc-eeEecCCCcEEEEecCCCceEEEEEcCCCceeE
Confidence 3578899999999888888889999999987776554443 33334 99999999998888766 67777765543100
Q ss_pred cchhhhhHhhhhcCCceeEEEEeecccccccccCceeeEEEeeeecccccceeeeeeccceeEEEeecccceeccccccc
Q psy18231 285 IQVRCLNEALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPI 364 (540)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (540)
.. ..
T Consensus 209 ~~------------------------------------------------------------------------g~---- 212 (409)
T 3hrp_A 209 RI------------------------------------------------------------------------GQ---- 212 (409)
T ss_dssp EE------------------------------------------------------------------------EE----
T ss_pred Ee------------------------------------------------------------------------ee----
Confidence 00 00
Q ss_pred ccccchhhhhhcccccEEEEEecC--CeeEeeeCCCeEEEEeCCCCceEEe----eeC-Cc---eEEEEEec-CCcEEEe
Q psy18231 365 SIHNSCFQALKEARDSITSVHVSD--HEILTASLDCRIRRYDIRTGNLVTD----YVG-EP---IVDACFTR-DCQCILT 433 (540)
Q Consensus 365 ~~~~~~~~~~~~~~~~v~~l~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~----~~~-~~---i~~~~~sp-~~~~l~~ 433 (540)
........+.+++++| ..|+++..++.|+.||..++..... ..+ .. ...++|+| ++.++++
T Consensus 213 --------~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~ 284 (409)
T 3hrp_A 213 --------LGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMS 284 (409)
T ss_dssp --------CCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEE
T ss_pred --------ccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEE
Confidence 0000223456677877 5666677788999999987764322 111 11 23999999 5677777
Q ss_pred ecCCCeEEEEeccccchhhhhccCc---------------CCcceEEEEecCCCCeEEEee-CCCcEEEEEecCCcceeE
Q psy18231 434 CSTDECLRLFDKATGELLEEYKGHK---------------SGDFRIECCLDSKDSQIFCGS-SDGKIYKWQLVDSSQIST 497 (540)
Q Consensus 434 ~~~dg~i~i~d~~~~~~~~~~~~~~---------------~~v~~~~~~~s~~~~~l~s~s-~dg~i~iwd~~~~~~~~~ 497 (540)
-..++.|+.||.... +..+.++. ..... ++++++|+++++-+ .++.|+.|++.+++. .+
T Consensus 285 d~~~~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~g--ia~d~dG~lyvad~~~~~~I~~~~~~~G~v-~~ 359 (409)
T 3hrp_A 285 DQNLSSVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPNG--MTVDEDGNFYIVDGFKGYCLRKLDILDGYV-ST 359 (409)
T ss_dssp ETTTTEEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEEE--EEECTTCCEEEEETTTTCEEEEEETTTTEE-EE
T ss_pred eCCCCEEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCeE--EEEeCCCCEEEEeCCCCCEEEEEECCCCEE-EE
Confidence 777899999997532 22222221 11233 48999999777777 889999999877764 33
Q ss_pred EEeccc---------------ceeeeEEEEcCCCcEEEeec-CCeeEEEEcc
Q psy18231 498 LIHSVG---------------KAVVNSLCSHPTRKHIMSAC-GNNVKLWTAE 533 (540)
Q Consensus 498 ~~~~~~---------------~~~v~~l~~s~d~~~l~s~~-d~~i~iw~~~ 533 (540)
+. ++ -.....++++++|.++++-. ++.|+.++++
T Consensus 360 ~~--g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~e 409 (409)
T 3hrp_A 360 VA--GQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAVE 409 (409)
T ss_dssp EE--ECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEEC
T ss_pred Ee--CCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEeC
Confidence 33 22 24588999999988888877 8899988764
|
| >3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=99.51 E-value=6e-12 Score=121.07 Aligned_cols=235 Identities=13% Similarity=0.117 Sum_probs=160.1
Q ss_pred ecCeEEEEeCCCCCEEEEeeCCCcEEEEcCCCCeeEEEeecCCcceeEEEEeeCCCeEEEeeCCC--eEEEEEcCCCcee
Q psy18231 164 LSGLMHTRFPVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDK--SVILWEVTTGQPV 241 (540)
Q Consensus 164 ~~~v~~v~~spdg~~lat~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~dg--~i~iwd~~~~~~~ 241 (540)
......++|+++++++++...++.|++||..++........ ..... ++|+|+++.|+++..++ .|.+|+...+...
T Consensus 130 ~~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~-~~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~ 207 (409)
T 3hrp_A 130 FKYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPG-FKGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAP 207 (409)
T ss_dssp CCCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEET-CCBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCE
T ss_pred cCCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeecc-CCCCc-eeEecCCCcEEEEecCCCceEEEEEcCCCcee
Confidence 35688999999999777777789999999988876655554 33334 99999999998888766 7999998776554
Q ss_pred Eec----cccCCceeEEEECCCCCEEEEecCCCcEEEEEecCCCCCCcchhhhhHhhhhcCCceeEEEEeeccccccccc
Q psy18231 242 RRW----REHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHLSN 317 (540)
Q Consensus 242 ~~~----~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (540)
..+ ......+.+++++|++..|+.+..++.|..||..+.......
T Consensus 208 ~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~------------------------------- 256 (409)
T 3hrp_A 208 TRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIK------------------------------- 256 (409)
T ss_dssp EEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEE-------------------------------
T ss_pred EEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEe-------------------------------
Confidence 433 224567889999995555555777889999998765410000
Q ss_pred CceeeEEEeeeecccccceeeeeeccceeEEEeecccceecccccccccccchhhhhhcccc--cEEEEEecC--C-eeE
Q psy18231 318 GLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEARD--SITSVHVSD--H-EIL 392 (540)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~v~~l~~~~--~-~l~ 392 (540)
. . ...++.. +...++++| . +++
T Consensus 257 ---------------------------------~-~-------------------~~~g~~~~~P~~~ia~~p~~g~lyv 283 (409)
T 3hrp_A 257 ---------------------------------Q-L-------------------ELSGSLGTNPGPYLIYYFVDSNFYM 283 (409)
T ss_dssp ---------------------------------E-C-------------------CCCSCCCCSSCCEEEEETTTTEEEE
T ss_pred ---------------------------------c-c-------------------cccCCCCCCccccEEEeCCCCEEEE
Confidence 0 0 0000001 112677776 3 444
Q ss_pred eeeCCCeEEEEeCCCCceEEeeeC-----------------CceEEEEEecCCcEEEeec-CCCeEEEEeccccchhhhh
Q psy18231 393 TASLDCRIRRYDIRTGNLVTDYVG-----------------EPIVDACFTRDCQCILTCS-TDECLRLFDKATGELLEEY 454 (540)
Q Consensus 393 ~~~~dg~i~iwd~~~~~~~~~~~~-----------------~~i~~~~~sp~~~~l~~~~-~dg~i~i~d~~~~~~~~~~ 454 (540)
+-..++.|+.|+.... +..+.+ .....++++|+|+++++-. .++.|+.||+.+++. .++
T Consensus 284 ~d~~~~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v-~~~ 360 (409)
T 3hrp_A 284 SDQNLSSVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYV-STV 360 (409)
T ss_dssp EETTTTEEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTEE-EEE
T ss_pred EeCCCCEEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEE-EEE
Confidence 5566788999987643 222221 2378999999999888877 889999999877753 333
Q ss_pred ccC---------------cCCcceEEEEecCCCCeEEEeeCCCcEEEEEe
Q psy18231 455 KGH---------------KSGDFRIECCLDSKDSQIFCGSSDGKIYKWQL 489 (540)
Q Consensus 455 ~~~---------------~~~v~~~~~~~s~~~~~l~s~s~dg~i~iwd~ 489 (540)
.++ -.....+ +++++|.++++-..++.|+.+++
T Consensus 361 ~g~~~~~g~~~g~~~~~~~~~P~gi--avd~~g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 361 AGQVDVASQIDGTPLEATFNYPYDI--CYDGEGGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp EECTTCBSCCCBSTTTCCBSSEEEE--EECSSSEEEEEESTTCEEEEEEE
T ss_pred eCCCCCCCcCCCChhceEeCCceEE--EEcCCCCEEEEECCCCeEEEEEe
Confidence 332 1123334 88999888888888888888775
|
| >2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.51 E-value=1.1e-12 Score=123.66 Aligned_cols=258 Identities=10% Similarity=0.030 Sum_probs=163.9
Q ss_pred cCeEEEEeCCCCCEEEEee--CCCcEEEEcCCCCeeEEEe-------ecCCcceeEEEEeeCCCeEEEeeC-----CCeE
Q psy18231 165 SGLMHTRFPVDGSYCLTCG--SDKKIKLWNPYRNLLLKTY-------GGHAHEVNDATAACDSSQIASGAS-----DKSV 230 (540)
Q Consensus 165 ~~v~~v~~spdg~~lat~~--~dg~i~iwd~~~~~~~~~~-------~~h~~~v~~l~~sp~~~~l~s~s~-----dg~i 230 (540)
.....++++|+|+++++.. .++.++||.+.+++. ..+ ..|...+..++++++++++++-.. ++.|
T Consensus 17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~-~~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i 95 (343)
T 2qe8_A 17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGL-IPFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKL 95 (343)
T ss_dssp SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEE-EESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCCEE
T ss_pred CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCCe-ecCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCCeE
Confidence 5789999999999988864 234355665545543 322 134568899999999887666544 5789
Q ss_pred EEEEcCCCceeEeccc------cCCceeEEEECCCCCEE-EEec---CCCcEEEEEecCCCCCCcchhhhhHhhhhcCCc
Q psy18231 231 ILWEVTTGQPVRRWRE------HASKVTCVKFNEDSSVV-ISGS---QDNTVMMWDVKSRSHHPIQVRCLNEALKEARDS 300 (540)
Q Consensus 231 ~iwd~~~~~~~~~~~~------h~~~v~~~~~~~~~~~l-~s~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 300 (540)
.+||+.+++.+..+.. +...+..+++++++..+ ++-. .++.|.+||+.+++....
T Consensus 96 ~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~--------------- 160 (343)
T 2qe8_A 96 VAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARV--------------- 160 (343)
T ss_dssp EEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEE---------------
T ss_pred EEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEE---------------
Confidence 9999999987665542 23457899999865444 4544 578899999887652100
Q ss_pred eeEEEEeecccccccccCceeeEEEeeeecccccceeeeeeccceeEEEeecccceecccccccccccchhhhhhccc--
Q psy18231 301 ITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEAR-- 378 (540)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 378 (540)
+..|.
T Consensus 161 -------------------------------------------------------------------------~~~~~~~ 167 (343)
T 2qe8_A 161 -------------------------------------------------------------------------LQGYPGI 167 (343)
T ss_dssp -------------------------------------------------------------------------CTTCTTT
T ss_pred -------------------------------------------------------------------------ecCCCcc
Confidence 00000
Q ss_pred --ccEEEEEecCCeeEeeeCCCeEEEEeCCCCceEEeeeCCceEEEEEecCCcEEEeecCCC-eEEEEeccc--------
Q psy18231 379 --DSITSVHVSDHEILTASLDCRIRRYDIRTGNLVTDYVGEPIVDACFTRDCQCILTCSTDE-CLRLFDKAT-------- 447 (540)
Q Consensus 379 --~~v~~l~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg-~i~i~d~~~-------- 447 (540)
.. ..+.+....+.+.+.++.++.|. ..+..++|+|+|+.|+.+..++ .+..++...
T Consensus 168 ~~~~-~~~~~~g~~~~~~~~~g~~~~~~------------~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~ 234 (343)
T 2qe8_A 168 APED-IDLVIDGVPVQIGQPDGTVIRPH------------LGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTD 234 (343)
T ss_dssp SCCS-CCCEETTEECBEECTTSCEECCC------------CCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCH
T ss_pred cccc-cceeECCEEEEeccCCCceecee------------cccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCCh
Confidence 00 01111223344555666665553 2467899999999888877665 555555321
Q ss_pred cchhhhhc--cCcCCcceEEEEecCCCCeEEEeeCCCcEEEEEecCCcceeEEEecccceeeeEEEEcCCCcEEEeec-C
Q psy18231 448 GELLEEYK--GHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC-G 524 (540)
Q Consensus 448 ~~~~~~~~--~~~~~v~~~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~-d 524 (540)
.+....+. ++......+ +++++|.++++...++.|.+||..+++....... .+...+.+++|.++++++++.+ .
T Consensus 235 ~~~~~~~~~~g~~g~pdgi--a~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~-~~~~~p~~va~~~~g~l~v~~~~~ 311 (343)
T 2qe8_A 235 AELGSKIERYSEKPICDGI--SIDKDHNIYVGDLAHSAIGVITSADRAYKLLVTD-EKLSWTDSFNFGSDGYLYFDCNQL 311 (343)
T ss_dssp HHHHTTCEEEEECCSCSCE--EECTTCCEEEEEGGGTEEEEEETTTTEEEEEEEC-GGGSCEEEEEECTTSCEEEEECCG
T ss_pred hhhhcceEecccCCCCceE--EECCCCCEEEEccCCCeEEEEECCCCCEEEEEEC-CceecCCeeEECCCCcEEEEeCcc
Confidence 11111111 233333445 8999999999999999999999756764333321 2345689999999999888876 4
Q ss_pred Cee
Q psy18231 525 NNV 527 (540)
Q Consensus 525 ~~i 527 (540)
+.+
T Consensus 312 ~~~ 314 (343)
T 2qe8_A 312 HHS 314 (343)
T ss_dssp GGS
T ss_pred ccc
Confidence 433
|
| >3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} | Back alignment and structure |
|---|
Probab=99.49 E-value=6.7e-12 Score=119.38 Aligned_cols=260 Identities=10% Similarity=0.024 Sum_probs=173.0
Q ss_pred ceeeeeccccccee--eeeecCeEEEEeCCCCCEEEEee----------CCCcEEEEcCCCCeeEEEeecC-------Cc
Q psy18231 147 WSIRVYRPLTVNRE--LFVLSGLMHTRFPVDGSYCLTCG----------SDKKIKLWNPYRNLLLKTYGGH-------AH 207 (540)
Q Consensus 147 ~~i~~~~~~~~~~~--~~h~~~v~~v~~spdg~~lat~~----------~dg~i~iwd~~~~~~~~~~~~h-------~~ 207 (540)
..|.+++..+.... +.-...- .++++|||++|+++. .++.|.++|..+++.+.++.-. ..
T Consensus 99 ~~VsVID~~t~~vv~~I~vG~~P-gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~ 177 (426)
T 3c75_H 99 TQQFVIDGSTGRILGMTDGGFLP-HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVGT 177 (426)
T ss_dssp EEEEEEETTTTEEEEEEEECSSC-EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSC
T ss_pred CeEEEEECCCCEEEEEEECCCCC-ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccccCC
Confidence 67888887775432 2122223 899999999988775 3678999999999998887532 23
Q ss_pred ceeEEEEeeCCCeEEEeeC--CCeEEEEEcCCCceeEeccccCCceeEEEECCCC-CEEEEecCCCcEEEEEecCCCCCC
Q psy18231 208 EVNDATAACDSSQIASGAS--DKSVILWEVTTGQPVRRWREHASKVTCVKFNEDS-SVVISGSQDNTVMMWDVKSRSHHP 284 (540)
Q Consensus 208 ~v~~l~~sp~~~~l~s~s~--dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~s~~~dg~i~iwd~~~~~~~~ 284 (540)
....+.|+|||++|+.+.. ++.|.+.|+.+++.+..+.-... ....|++ ..+++.+.||.+.+.++.+++...
T Consensus 178 ~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~----~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~ 253 (426)
T 3c75_H 178 YQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDC----YHIFPASPTVFYMNCRDGSLARVDFADGETKV 253 (426)
T ss_dssp CGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE----EEEEEEETTEEEEEETTSSEEEEECCTTCCEE
T ss_pred CcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCc----eeeccCCCcEEEEEcCCCCEEEEECCCCcEEE
Confidence 4567899999999998874 57899999999998887753211 2333433 556667778888888874443100
Q ss_pred cchhhhhHhhhhcCCceeEEEEeecccccccccCceeeEEEeeeecccccceeeeeeccceeEEEeecccceeccccccc
Q psy18231 285 IQVRCLNEALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPI 364 (540)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (540)
.. . .
T Consensus 254 ~~------------------------------------------------------------------~---~------- 257 (426)
T 3c75_H 254 TN------------------------------------------------------------------T---E------- 257 (426)
T ss_dssp EE------------------------------------------------------------------C---C-------
T ss_pred Ee------------------------------------------------------------------e---e-------
Confidence 00 0 0
Q ss_pred ccccchhhhhhcccccE-EEEEecC--CeeEeeeCCCeEEEEeCCCCceE--Eeee------------CCceEEEEEecC
Q psy18231 365 SIHNSCFQALKEARDSI-TSVHVSD--HEILTASLDCRIRRYDIRTGNLV--TDYV------------GEPIVDACFTRD 427 (540)
Q Consensus 365 ~~~~~~~~~~~~~~~~v-~~l~~~~--~~l~~~~~dg~i~iwd~~~~~~~--~~~~------------~~~i~~~~~sp~ 427 (540)
.+.....++ ..+.+.+ ..++..+..+.+.+.|+...... ..+. ......++++|+
T Consensus 258 --------~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~d 329 (426)
T 3c75_H 258 --------VFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQ 329 (426)
T ss_dssp --------CCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGG
T ss_pred --------eeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCC
Confidence 000000000 0122333 44445556788888888655421 1111 112233789999
Q ss_pred CcEEEeecC----------CCeEEEEeccccchhhhhccCcCCcceEEEEecCCCC-eEEEee-CCCcEEEEEecCCcce
Q psy18231 428 CQCILTCST----------DECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDS-QIFCGS-SDGKIYKWQLVDSSQI 495 (540)
Q Consensus 428 ~~~l~~~~~----------dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~s~~~~-~l~s~s-~dg~i~iwd~~~~~~~ 495 (540)
++.+++... ++.|.++|..+.+.+.++..... ...+ +|+|||+ ++++.. .++.|.++|+.+++.+
T Consensus 330 g~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg~~-P~gi--a~spDg~~~lyv~n~~s~~VsVID~~t~kvv 406 (426)
T 3c75_H 330 SDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIELGHE-IDSI--NVSQDAEPLLYALSAGTQTLHIYDAATGEEL 406 (426)
T ss_dssp GTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEEE-ECEE--EECCSSSCEEEEEETTTTEEEEEETTTCCEE
T ss_pred CCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEECCCC-cCeE--EEccCCCEEEEEEcCCCCeEEEEECCCCCEE
Confidence 887777642 35799999999999988865432 3445 8999999 888887 5999999999999999
Q ss_pred eEE
Q psy18231 496 STL 498 (540)
Q Consensus 496 ~~~ 498 (540)
.++
T Consensus 407 ~tI 409 (426)
T 3c75_H 407 RSV 409 (426)
T ss_dssp EEE
T ss_pred EEe
Confidence 887
|
| >1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=99.49 E-value=4.3e-12 Score=130.02 Aligned_cols=264 Identities=11% Similarity=0.102 Sum_probs=169.0
Q ss_pred CCCEEEEeeCCCcEEEEcCCCCeeEEEeecC-C----cceeEEEEeeCCCeEEEeeC------CCeEEEEEcCCCceeEe
Q psy18231 175 DGSYCLTCGSDKKIKLWNPYRNLLLKTYGGH-A----HEVNDATAACDSSQIASGAS------DKSVILWEVTTGQPVRR 243 (540)
Q Consensus 175 dg~~lat~~~dg~i~iwd~~~~~~~~~~~~h-~----~~v~~l~~sp~~~~l~s~s~------dg~i~iwd~~~~~~~~~ 243 (540)
++..|++++.|+.|..+|..+|+.+.++..+ . ..+.+--...+ ..++.++. ++.|..+|..+|+.+..
T Consensus 127 ~~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~~p~v~~-~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~ 205 (677)
T 1kb0_A 127 WKGKVYVGAWDGRLIALDAATGKEVWHQNTFEGQKGSLTITGAPRVFK-GKVIIGNGGAEYGVRGYITAYDAETGERKWR 205 (677)
T ss_dssp ETTEEEEECTTSEEEEEETTTCCEEEEEETTTTCCSSCBCCSCCEEET-TEEEECCBCTTTCCBCEEEEEETTTCCEEEE
T ss_pred ECCEEEEEcCCCEEEEEECCCCCEEeeecCCcCcCcCcccccCcEEEC-CEEEEEecccccCCCCEEEEEECCCCcEEEE
Confidence 4567888888999999999999999988754 2 12222111124 45555543 69999999999998876
Q ss_pred ccccCC--------------------------------ceeEEEECCCCCEEEEecCCCc-------------------E
Q psy18231 244 WREHAS--------------------------------KVTCVKFNEDSSVVISGSQDNT-------------------V 272 (540)
Q Consensus 244 ~~~h~~--------------------------------~v~~~~~~~~~~~l~s~~~dg~-------------------i 272 (540)
+..... ....++++|++..++.++.++. |
T Consensus 206 ~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv 285 (677)
T 1kb0_A 206 WFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASI 285 (677)
T ss_dssp EESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEE
T ss_pred eccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEE
Confidence 643211 1135778888888887776643 4
Q ss_pred EEEEecCCCCCCcchhhhhHhhhhcCCceeEEEEeecccccccccCceeeEEEeeeecccccceeeeeeccceeEEEeec
Q psy18231 273 MMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDF 352 (540)
Q Consensus 273 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (540)
..+|.++++
T Consensus 286 ~AlD~~TG~----------------------------------------------------------------------- 294 (677)
T 1kb0_A 286 VALDPDTGK----------------------------------------------------------------------- 294 (677)
T ss_dssp EEECTTTCC-----------------------------------------------------------------------
T ss_pred EEEECCCCC-----------------------------------------------------------------------
Confidence 444444443
Q ss_pred ccceecccccccccccchhhhhhcccc-cEEEEEecC---CeeEeeeCCCeEEEEeCCCCceEEeeeCCc----------
Q psy18231 353 LGSTQIGDVTPISIHNSCFQALKEARD-SITSVHVSD---HEILTASLDCRIRRYDIRTGNLVTDYVGEP---------- 418 (540)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~l~~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~---------- 418 (540)
..|......... ........ .+....... ..+++++.+|.++++|.++++.+..+.-.+
T Consensus 295 ----~~W~~~~~~~d~---wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~ 367 (677)
T 1kb0_A 295 ----YKWHYQETPGDN---WDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKH 367 (677)
T ss_dssp ----EEEEEESSTTCC---SCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTT
T ss_pred ----EEEEEecCCCcc---cccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccccCCC
Confidence 111111000000 00000011 112222233 568889999999999999999886654211
Q ss_pred ---e------------------------EEEEEecCCcEEEeecC-----------------------------------
Q psy18231 419 ---I------------------------VDACFTRDCQCILTCST----------------------------------- 436 (540)
Q Consensus 419 ---i------------------------~~~~~sp~~~~l~~~~~----------------------------------- 436 (540)
+ ..++++|++.++++...
T Consensus 368 g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~ 447 (677)
T 1kb0_A 368 GKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFN 447 (677)
T ss_dssp SCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEEC
T ss_pred CceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeecccccccccccccccccccccccccccc
Confidence 1 15688998888877543
Q ss_pred --------CCeEEEEeccccchhhhhccCcCCcceEEEEecCCCCeEEEeeCCCcEEEEEecCCcceeEEEecccceeee
Q psy18231 437 --------DECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVN 508 (540)
Q Consensus 437 --------dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~ 508 (540)
.|.|..||+.+++.+.++... .+.... .+..++..++.++.||.+++||..+++.+..+.. ++.....
T Consensus 448 ~~~~~~~~~g~l~A~D~~tG~~~W~~~~~-~~~~~g--~~~~~g~~v~~g~~dg~l~a~D~~tG~~lw~~~~-~~~~~~~ 523 (677)
T 1kb0_A 448 AEPPKSKPFGRLLAWDPVAQKAAWSVEHV-SPWNGG--TLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPT-GTGVVAA 523 (677)
T ss_dssp SSCCCSCCEEEEEEEETTTTEEEEEEEES-SSCCCC--EEEETTTEEEEECTTSEEEEEETTTCCEEEEEEC-SSCCCSC
T ss_pred cccCCCCCccEEEEEeCCCCcEEeecCCC-CCCcCc--ceEeCCCEEEEECCCCcEEEEECCCCceeeeeeC-CCCcccC
Confidence 278999999999988776543 233333 4556778899999999999999999999999984 2333334
Q ss_pred EEEEcCCCcEEEe
Q psy18231 509 SLCSHPTRKHIMS 521 (540)
Q Consensus 509 ~l~~s~d~~~l~s 521 (540)
-+.|.++|+.+++
T Consensus 524 p~~y~~~G~~~v~ 536 (677)
T 1kb0_A 524 PSTYMVDGRQYVS 536 (677)
T ss_dssp CEEEEETTEEEEE
T ss_pred CEEEEeCCEEEEE
Confidence 4566788865544
|
| >1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C* | Back alignment and structure |
|---|
Probab=99.48 E-value=9.3e-13 Score=123.49 Aligned_cols=168 Identities=11% Similarity=0.086 Sum_probs=134.7
Q ss_pred CeEEEEeCCCCCEEEEeeCCCcEEEEcCCCCe-----------eEEEeecCCcceeEEEEeeCCCeEEEeeCCCeEEEEE
Q psy18231 166 GLMHTRFPVDGSYCLTCGSDKKIKLWNPYRNL-----------LLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWE 234 (540)
Q Consensus 166 ~v~~v~~spdg~~lat~~~dg~i~iwd~~~~~-----------~~~~~~~h~~~v~~l~~sp~~~~l~s~s~dg~i~iwd 234 (540)
+++.+++++...++++|+.+ .+.+|++++.+ ..... .+.. |+.++| |+++|+++ .++.|++||
T Consensus 39 ~~nlLais~~~gll~a~~~~-~l~v~~~~~l~~~~~~~~~~~~~~~~~-~lp~-V~~l~f--d~~~L~v~-~~~~l~v~d 112 (388)
T 1xip_A 39 SLQNLDISNSKSLFVAASGS-KAVVGELQLLRDHITSDSTPLTFKWEK-EIPD-VIFVCF--HGDQVLVS-TRNALYSLD 112 (388)
T ss_dssp CCBCEEEETTTTEEEEEETT-EEEEEEHHHHHHHHHSSSCCCCCSEEE-ECTT-EEEEEE--ETTEEEEE-ESSEEEEEE
T ss_pred cccEEEEcCCCCEEEEeCCC-EEEEEEhhHhhhhhccccccccceEEe-eCCC-eeEEEE--CCCEEEEE-cCCcEEEEE
Confidence 68999999999999999987 55569865332 11223 3566 999999 89999999 889999999
Q ss_pred cCCCceeEeccccCCceeEEEECCCCCEEEEecCCCcEEEEEecCCCCCCcchhhhhHhhhhcCCceeEEEEeecccccc
Q psy18231 235 VTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNH 314 (540)
Q Consensus 235 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (540)
+.+.........|...+.++.+.+. .+++++.||.|.+||+.++..
T Consensus 113 v~sl~~~~~~~~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~~-------------------------------- 158 (388)
T 1xip_A 113 LEELSEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKST-------------------------------- 158 (388)
T ss_dssp SSSTTCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCE--------------------------------
T ss_pred chhhhccCccceeecceeeEEecCC--CEEEEECCCCEEEEEccCCcc--------------------------------
Confidence 9887766667778888998888764 388889999999999987651
Q ss_pred cccCceeeEEEeeeecccccceeeeeeccceeEEEeecccceecccccccccccchhhhhhcccccEEEEEecCCeeEee
Q psy18231 315 LSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEARDSITSVHVSDHEILTA 394 (540)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~~~ 394 (540)
..+...|++++|+|+-++.|
T Consensus 159 ------------------------------------------------------------~~~~~~Vs~v~WSpkG~~vg 178 (388)
T 1xip_A 159 ------------------------------------------------------------KQLAQNVTSFDVTNSQLAVL 178 (388)
T ss_dssp ------------------------------------------------------------EEEEESEEEEEECSSEEEEE
T ss_pred ------------------------------------------------------------ccccCCceEEEEcCCceEEE
Confidence 01345799999999668999
Q ss_pred eCCCeEEEEeCCCCce--EEee------e-----CCceEEEEEecCCcEEEe
Q psy18231 395 SLDCRIRRYDIRTGNL--VTDY------V-----GEPIVDACFTRDCQCILT 433 (540)
Q Consensus 395 ~~dg~i~iwd~~~~~~--~~~~------~-----~~~i~~~~~sp~~~~l~~ 433 (540)
..||++++|+...++. ..++ . ...|.++.|.+++.++++
T Consensus 179 ~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~ 230 (388)
T 1xip_A 179 LKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAV 230 (388)
T ss_dssp ETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEE
T ss_pred EcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEE
Confidence 9999999999987775 5555 2 357999999999999887
|
| >3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A | Back alignment and structure |
|---|
Probab=99.48 E-value=2.5e-11 Score=116.06 Aligned_cols=266 Identities=11% Similarity=0.073 Sum_probs=168.2
Q ss_pred CCCEEEEeeCCCcEEEEcCCCCeeEEEeecCCcceeEEEEeeCCCeEEEeeCCCeEEEEEcCCCceeEeccccCCce---
Q psy18231 175 DGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPVRRWREHASKV--- 251 (540)
Q Consensus 175 dg~~lat~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v--- 251 (540)
++..+++++.++.|..+|..+++.+................ +..++.++.++.|..+|..+|+.+..........
T Consensus 102 ~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~p~~~--~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~ 179 (376)
T 3q7m_A 102 SGGHVYIGSEKAQVYALNTSDGTVAWQTKVAGEALSRPVVS--DGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLR 179 (376)
T ss_dssp ETTEEEEEETTSEEEEEETTTCCEEEEEECSSCCCSCCEEE--TTEEEEECTTSEEEEEETTTCCEEEEEECCC-----C
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEEeCCCceEcCCEEE--CCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeec
Confidence 45577888889999999999999988776543322222232 4578888899999999999999887765432211
Q ss_pred --eEEEECCCCCEEEEecCCCcEEEEEecCCCCCCcchhhhhHhhhhcCCceeEEEEeecccccccccCceeeEEEeeee
Q psy18231 252 --TCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRC 329 (540)
Q Consensus 252 --~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (540)
...... +..++.++.++.+..+|..+++..-.. ..
T Consensus 180 ~~~~~~~~--~~~v~~g~~~g~l~~~d~~tG~~~w~~-----------------------------------------~~ 216 (376)
T 3q7m_A 180 GESAPTTA--FGAAVVGGDNGRVSAVLMEQGQMIWQQ-----------------------------------------RI 216 (376)
T ss_dssp CCCCCEEE--TTEEEECCTTTEEEEEETTTCCEEEEE-----------------------------------------EC
T ss_pred CCCCcEEE--CCEEEEEcCCCEEEEEECCCCcEEEEE-----------------------------------------ec
Confidence 111222 446788888999999999887621000 00
Q ss_pred cccccceeeeeeccceeEEEeecccceecccccccccccchhhhhhcccccEEEEEecCCeeEeeeCCCeEEEEeCCCCc
Q psy18231 330 KYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEARDSITSVHVSDHEILTASLDCRIRRYDIRTGN 409 (540)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~dg~i~iwd~~~~~ 409 (540)
... .+... ...+.. ...........+++++.++.+..+|.++++
T Consensus 217 ~~~--------------------~~~~~-------------~~~~~~---~~~~p~~~~~~v~~~~~~g~l~~~d~~tG~ 260 (376)
T 3q7m_A 217 SQA--------------------TGSTE-------------IDRLSD---VDTTPVVVNGVVFALAYNGNLTALDLRSGQ 260 (376)
T ss_dssp CC--------------------------------------------C---CCCCCEEETTEEEEECTTSCEEEEETTTCC
T ss_pred ccC--------------------CCCcc-------------cccccc---cCCCcEEECCEEEEEecCcEEEEEECCCCc
Confidence 000 00000 000000 000011234677888889999999999999
Q ss_pred eEEeeeCCceEEEEEecCCcEEEeecCCCeEEEEeccccchhhhhccC-cCCcceEEEEecCCCCeEEEeeCCCcEEEEE
Q psy18231 410 LVTDYVGEPIVDACFTRDCQCILTCSTDECLRLFDKATGELLEEYKGH-KSGDFRIECCLDSKDSQIFCGSSDGKIYKWQ 488 (540)
Q Consensus 410 ~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-~~~v~~~~~~~s~~~~~l~s~s~dg~i~iwd 488 (540)
.+..........+.. ++..+++++.++.+..+|..+++.+...... ....... .. .+..|+.++.+|.|+++|
T Consensus 261 ~~w~~~~~~~~~~~~--~~~~l~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~--~~--~~~~l~v~~~~g~l~~~d 334 (376)
T 3q7m_A 261 IMWKRELGSVNDFIV--DGNRIYLVDQNDRVMALTIDGGVTLWTQSDLLHRLLTSP--VL--YNGNLVVGDSEGYLHWIN 334 (376)
T ss_dssp EEEEECCCCEEEEEE--ETTEEEEEETTCCEEEEETTTCCEEEEECTTTTSCCCCC--EE--ETTEEEEECTTSEEEEEE
T ss_pred EEeeccCCCCCCceE--ECCEEEEEcCCCeEEEEECCCCcEEEeecccCCCcccCC--EE--ECCEEEEEeCCCeEEEEE
Confidence 887776555555444 4567777888999999999999876555421 1122222 12 356888999999999999
Q ss_pred ecCCcceeEEEecccceeee-EEEEcCCCcEEEeec-CCeeEEEE
Q psy18231 489 LVDSSQISTLIHSVGKAVVN-SLCSHPTRKHIMSAC-GNNVKLWT 531 (540)
Q Consensus 489 ~~~~~~~~~~~~~~~~~~v~-~l~~s~d~~~l~s~~-d~~i~iw~ 531 (540)
..+++.+.... .....+. .... .+ ..|+.++ +|.|..|+
T Consensus 335 ~~tG~~~~~~~--~~~~~~~~~~~~-~~-~~l~v~~~~G~l~~~~ 375 (376)
T 3q7m_A 335 VEDGRFVAQQK--VDSSGFQTEPVA-AD-GKLLIQAKDGTVYSIT 375 (376)
T ss_dssp TTTCCEEEEEE--CCTTCBCSCCEE-ET-TEEEEEBTTSCEEEEE
T ss_pred CCCCcEEEEEe--cCCCcceeCCEE-EC-CEEEEEeCCCEEEEEe
Confidence 99999888776 3222222 2222 24 4556666 99999887
|
| >3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B | Back alignment and structure |
|---|
Probab=99.46 E-value=3.9e-11 Score=110.47 Aligned_cols=226 Identities=12% Similarity=0.130 Sum_probs=145.9
Q ss_pred CCcceeEEEEeeC-CCeEEEeeCCCeEEEEEcCCCceeEeccccCCceeEEEECCCCCEEEEecCCCcEEEEEecCCCCC
Q psy18231 205 HAHEVNDATAACD-SSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHH 283 (540)
Q Consensus 205 h~~~v~~l~~sp~-~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~ 283 (540)
+..--.+..|+|+ +.++++...++.|..||..+++.. .+ .....+.+++++++++++++ . ++.|.+||..+++..
T Consensus 11 ~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~-~~~~~~~~i~~~~dG~l~v~-~-~~~l~~~d~~~g~~~ 86 (297)
T 3g4e_A 11 NCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQ-RV-TMDAPVSSVALRQSGGYVAT-I-GTKFCALNWKEQSAV 86 (297)
T ss_dssp CCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEE-EE-ECSSCEEEEEEBTTSSEEEE-E-TTEEEEEETTTTEEE
T ss_pred CCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcEE-EE-eCCCceEEEEECCCCCEEEE-E-CCeEEEEECCCCcEE
Confidence 3445568899995 455666677899999999877653 23 34578999999999995554 3 567999998765411
Q ss_pred CcchhhhhHhhhhcCCceeEEEEeecccccccccCceeeEEEeeeecccccceeeeeeccceeEEEeecccceecccccc
Q psy18231 284 PIQVRCLNEALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTP 363 (540)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (540)
.+. ..
T Consensus 87 ~~~----------------------------------------------------------------~~----------- 91 (297)
T 3g4e_A 87 VLA----------------------------------------------------------------TV----------- 91 (297)
T ss_dssp EEE----------------------------------------------------------------EC-----------
T ss_pred EEE----------------------------------------------------------------ec-----------
Confidence 000 00
Q ss_pred cccccchhhhhhcccccEEEEEecC-CeeEeee------------CCCeEEEEeCCCCceEEeeeC-CceEEEEEecCCc
Q psy18231 364 ISIHNSCFQALKEARDSITSVHVSD-HEILTAS------------LDCRIRRYDIRTGNLVTDYVG-EPIVDACFTRDCQ 429 (540)
Q Consensus 364 ~~~~~~~~~~~~~~~~~v~~l~~~~-~~l~~~~------------~dg~i~iwd~~~~~~~~~~~~-~~i~~~~~sp~~~ 429 (540)
........+..+++++ ..+..++ ..+.|..+|.. ++....... ...+.++|+|+++
T Consensus 92 ---------~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~-g~~~~~~~~~~~pngi~~spdg~ 161 (297)
T 3g4e_A 92 ---------DNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPD-HHVKKYFDQVDISNGLDWSLDHK 161 (297)
T ss_dssp ---------CTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTT-SCEEEEEEEESBEEEEEECTTSC
T ss_pred ---------CCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECC-CCEEEEeeccccccceEEcCCCC
Confidence 0000123456777777 3344433 12344444443 333222222 4578899999998
Q ss_pred EEE-eecCCCeEEEEec--cccch-----hhhhccCcCCcceEEEEecCCCCeEEEeeCCCcEEEEEecCCcceeEEEec
Q psy18231 430 CIL-TCSTDECLRLFDK--ATGEL-----LEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHS 501 (540)
Q Consensus 430 ~l~-~~~~dg~i~i~d~--~~~~~-----~~~~~~~~~~v~~~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~ 501 (540)
.|+ +.+.++.|.+||+ .++.. ...+..+......+ +++++|++.++...++.|..||..+++.+..+.
T Consensus 162 ~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~--~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~-- 237 (297)
T 3g4e_A 162 IFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGM--CIDAEGKLWVACYNGGRVIRLDPVTGKRLQTVK-- 237 (297)
T ss_dssp EEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEE--EEBTTSCEEEEEETTTEEEEECTTTCCEEEEEE--
T ss_pred EEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCee--EECCCCCEEEEEcCCCEEEEEcCCCceEEEEEE--
Confidence 664 5556789999987 34432 22222222333444 789999888887778899999988899998888
Q ss_pred ccceeeeEEEEc-CCCcEEEeec
Q psy18231 502 VGKAVVNSLCSH-PTRKHIMSAC 523 (540)
Q Consensus 502 ~~~~~v~~l~~s-~d~~~l~s~~ 523 (540)
.+...+++++|. ||++.|..++
T Consensus 238 ~p~~~~t~~~f~g~d~~~L~vt~ 260 (297)
T 3g4e_A 238 LPVDKTTSCCFGGKNYSEMYVTC 260 (297)
T ss_dssp CSSSBEEEEEEESGGGCEEEEEE
T ss_pred CCCCCceEEEEeCCCCCEEEEEc
Confidence 566779999998 8887665443
|
| >1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C* | Back alignment and structure |
|---|
Probab=99.46 E-value=7e-13 Score=124.32 Aligned_cols=171 Identities=12% Similarity=0.140 Sum_probs=127.9
Q ss_pred ceeEEEEeeCCCeEEEeeCCCeEEEEEcCCCc-----------eeEeccccCCceeEEEECCCCCEEEEecCCCcEEEEE
Q psy18231 208 EVNDATAACDSSQIASGASDKSVILWEVTTGQ-----------PVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWD 276 (540)
Q Consensus 208 ~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~-----------~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd 276 (540)
.+..+++++...++++|+.++ +.+|++.+.+ ... ...+.+ |+.++| |+++|+++ .++.|++||
T Consensus 39 ~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~~-~~~lp~-V~~l~f--d~~~L~v~-~~~~l~v~d 112 (388)
T 1xip_A 39 SLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKW-EKEIPD-VIFVCF--HGDQVLVS-TRNALYSLD 112 (388)
T ss_dssp CCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSE-EEECTT-EEEEEE--ETTEEEEE-ESSEEEEEE
T ss_pred cccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhccccccccceE-EeeCCC-eeEEEE--CCCEEEEE-cCCcEEEEE
Confidence 689999999999999999985 5669976443 112 224566 999999 88999998 889999999
Q ss_pred ecCCCCCCcchhhhhHhhhhcCCceeEEEEeecccccccccCceeeEEEeeeecccccceeeeeeccceeEEEeecccce
Q psy18231 277 VKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGST 356 (540)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (540)
+.+.....
T Consensus 113 v~sl~~~~------------------------------------------------------------------------ 120 (388)
T 1xip_A 113 LEELSEFR------------------------------------------------------------------------ 120 (388)
T ss_dssp SSSTTCEE------------------------------------------------------------------------
T ss_pred chhhhccC------------------------------------------------------------------------
Confidence 98765200
Q ss_pred ecccccccccccchhhhhhcccccEEEEEecCCeeEeeeCCCeEEEEeCCCCceEEeeeCCceEEEEEecCCcEEEeecC
Q psy18231 357 QIGDVTPISIHNSCFQALKEARDSITSVHVSDHEILTASLDCRIRRYDIRTGNLVTDYVGEPIVDACFTRDCQCILTCST 436 (540)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~ 436 (540)
....|...+.++.+.+..+++++.||.|.+||+.++.... ....|++++|||+| ++.|..
T Consensus 121 ----------------~~~~~~~~v~~i~~~~p~~av~~~dG~L~v~dl~~~~~~~--~~~~Vs~v~WSpkG--~~vg~~ 180 (388)
T 1xip_A 121 ----------------TVTSFEKPVFQLKNVNNTLVILNSVNDLSALDLRTKSTKQ--LAQNVTSFDVTNSQ--LAVLLK 180 (388)
T ss_dssp ----------------EEEECSSCEEEEEECSSEEEEEETTSEEEEEETTTCCEEE--EEESEEEEEECSSE--EEEEET
T ss_pred ----------------ccceeecceeeEEecCCCEEEEECCCCEEEEEccCCcccc--ccCCceEEEEcCCc--eEEEEc
Confidence 1122334456666666558899999999999999887654 34689999999999 678899
Q ss_pred CCeEEEEeccccch--hhhh------c---cCcCCcceEEEEecCCCCeEEEe
Q psy18231 437 DECLRLFDKATGEL--LEEY------K---GHKSGDFRIECCLDSKDSQIFCG 478 (540)
Q Consensus 437 dg~i~i~d~~~~~~--~~~~------~---~~~~~v~~~~~~~s~~~~~l~s~ 478 (540)
||.+++|+...++. .+++ . +|...|.++ .|.+++.++++-
T Consensus 181 dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI--~wl~~~~flv~y 231 (388)
T 1xip_A 181 DRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSV--TILSPQDFLAVF 231 (388)
T ss_dssp TSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEE--EESSSSEEEEEE
T ss_pred CCcEEEEcCCCccccccceecCCcccccccCCCeeEEEE--EEecCCeEEEEE
Confidence 99999998876664 3333 2 355555555 899999998863
|
| >1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=99.45 E-value=8.9e-12 Score=127.98 Aligned_cols=264 Identities=9% Similarity=0.066 Sum_probs=166.1
Q ss_pred CCCEEEEeeCCCcEEEEcCCCCeeEEEeecC--CcceeEEEEee---CCCeEEEee------CCCeEEEEEcCCCceeEe
Q psy18231 175 DGSYCLTCGSDKKIKLWNPYRNLLLKTYGGH--AHEVNDATAAC---DSSQIASGA------SDKSVILWEVTTGQPVRR 243 (540)
Q Consensus 175 dg~~lat~~~dg~i~iwd~~~~~~~~~~~~h--~~~v~~l~~sp---~~~~l~s~s------~dg~i~iwd~~~~~~~~~ 243 (540)
++..|++++.|+.|..+|..+|+.+.++... ......+..+| ++. ++.++ .+|.|..||..+|+.+..
T Consensus 120 ~~g~v~v~~~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~~~sP~v~~g~-v~vg~~~~~~~~~g~v~a~D~~tG~~~W~ 198 (689)
T 1yiq_A 120 WKGKVYVGVLDGRLEAIDAKTGQRAWSVDTRADHKRSYTITGAPRVVNGK-VVIGNGGAEFGVRGYVTAYDAETGKEAWR 198 (689)
T ss_dssp ETTEEEEECTTSEEEEEETTTCCEEEEEECCSCTTSCCBCCSCCEEETTE-EEECCBCTTTCCBCEEEEEETTTCCEEEE
T ss_pred ECCEEEEEccCCEEEEEECCCCCEeeeecCcCCCCCCccccCCcEEECCE-EEEEeCCCccCCCCEEEEEECCCCcEEEE
Confidence 4567888889999999999999999887642 11111111122 454 44443 368999999999998876
Q ss_pred cccc-------------------------------CCceeEEEECCCCCEEEEecCCCc-------------------EE
Q psy18231 244 WREH-------------------------------ASKVTCVKFNEDSSVVISGSQDNT-------------------VM 273 (540)
Q Consensus 244 ~~~h-------------------------------~~~v~~~~~~~~~~~l~s~~~dg~-------------------i~ 273 (540)
+... ......++++|+..+++.++.++. |.
T Consensus 199 ~~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~ 278 (689)
T 1yiq_A 199 FYTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIV 278 (689)
T ss_dssp EESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEE
T ss_pred ecccCCCcccccccccccccccccCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEE
Confidence 5421 011125778888888888877764 55
Q ss_pred EEEecCCCCCCcchhhhhHhhhhcCCceeEEEEeecccccccccCceeeEEEeeeecccccceeeeeeccceeEEEeecc
Q psy18231 274 MWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFL 353 (540)
Q Consensus 274 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (540)
.||.++++.
T Consensus 279 AlD~~TG~~----------------------------------------------------------------------- 287 (689)
T 1yiq_A 279 AVNADTGEY----------------------------------------------------------------------- 287 (689)
T ss_dssp EEETTTCCE-----------------------------------------------------------------------
T ss_pred EEEccCCce-----------------------------------------------------------------------
Confidence 555554441
Q ss_pred cceecccccccccccchhhhhhcccc-cEEEEEecC---CeeEeeeCCCeEEEEeCCCCceEEeeeCC------------
Q psy18231 354 GSTQIGDVTPISIHNSCFQALKEARD-SITSVHVSD---HEILTASLDCRIRRYDIRTGNLVTDYVGE------------ 417 (540)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~l~~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~~~------------ 417 (540)
.|........ ......... .+..+.+.. ..++.++.+|.++++|.++++.+....-.
T Consensus 288 ----~W~~~~~~~d---~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~ 360 (689)
T 1yiq_A 288 ----VWHYQTTPGD---AWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKT 360 (689)
T ss_dssp ----EEEEESSTTC---CSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTT
T ss_pred ----eEeeecCCcc---cccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccC
Confidence 1111100000 000000000 111223333 36888999999999999999987433211
Q ss_pred -----------------------------ceEEEEEecCCcEEEeecC--------------------------------
Q psy18231 418 -----------------------------PIVDACFTRDCQCILTCST-------------------------------- 436 (540)
Q Consensus 418 -----------------------------~i~~~~~sp~~~~l~~~~~-------------------------------- 436 (540)
.-..++|+|+..++++...
T Consensus 361 ~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p 440 (689)
T 1yiq_A 361 GRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMP 440 (689)
T ss_dssp TEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCC
T ss_pred CCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCccccccC
Confidence 0113788998877776521
Q ss_pred -------------CCeEEEEeccccchhhhhccCcCCcceEEEEecCCCCeEEEeeCCCcEEEEEecCCcceeEEEeccc
Q psy18231 437 -------------DECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVG 503 (540)
Q Consensus 437 -------------dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~ 503 (540)
+|.|+.||+.+++.+.++..+... ... .++..+.+++.|+.||.|+.||.++|+.+.+++. ++
T Consensus 441 ~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~~~-~~g--~~~tagglvf~gt~dg~l~a~D~~tG~~lw~~~~-~~ 516 (689)
T 1yiq_A 441 EGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPYVTIF-NGG--TLSTAGNLVFEGSADGRVIAYAADTGEKLWEQPA-AS 516 (689)
T ss_dssp SSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEESSSC-CCC--EEEETTTEEEEECTTSEEEEEETTTCCEEEEEEC-SS
T ss_pred cccccCCCCCCCcceeEEEEECCCCCeEeEccCCCCc-cCc--cceECCCEEEEECCCCcEEEEECCCCccceeeeC-CC
Confidence 378999999999988777655432 222 3556778999999999999999999999998874 22
Q ss_pred ceeeeEEEEcCCCcEEEe
Q psy18231 504 KAVVNSLCSHPTRKHIMS 521 (540)
Q Consensus 504 ~~~v~~l~~s~d~~~l~s 521 (540)
.....-+.|+.+|+..++
T Consensus 517 ~~~~~p~ty~~~G~qyv~ 534 (689)
T 1yiq_A 517 GVMAAPVTYSVDGEQYVT 534 (689)
T ss_dssp CCCSCCEEEEETTEEEEE
T ss_pred CcccCceEEEECCEEEEE
Confidence 222344667788875443
|
| >3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=5.4e-12 Score=130.57 Aligned_cols=238 Identities=13% Similarity=0.111 Sum_probs=150.0
Q ss_pred eecCeEEEEeCCCCCEEEE-----eeCCCcEEEEcCCCCeeEEEeecCCcceeEEEEeeCCCeEEEeeCCC---------
Q psy18231 163 VLSGLMHTRFPVDGSYCLT-----CGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDK--------- 228 (540)
Q Consensus 163 h~~~v~~v~~spdg~~lat-----~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~dg--------- 228 (540)
|...+..++|||||++||- |+...+|++||+.+++.+.... +......++|+ |++.|+.++.+.
T Consensus 127 ~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~-~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~ 204 (693)
T 3iuj_A 127 GTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPL-KDVKFSGISWL-GNEGFFYSSYDKPDGSELSAR 204 (693)
T ss_dssp SCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEE-EEEESCCCEEE-TTTEEEEEESSCCC-------
T ss_pred CcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCcccc-CCceeccEEEe-CCCEEEEEEecCccccccccc
Confidence 5567889999999999984 3333689999999998655311 11223678999 999999888774
Q ss_pred ----eEEEEEcCCCc----eeEeccc-cCCceeEEEECCCCCEEEEecC----CCcEEEEEecCCCCCCcchhhhhHhhh
Q psy18231 229 ----SVILWEVTTGQ----PVRRWRE-HASKVTCVKFNEDSSVVISGSQ----DNTVMMWDVKSRSHHPIQVRCLNEALK 295 (540)
Q Consensus 229 ----~i~iwd~~~~~----~~~~~~~-h~~~v~~~~~~~~~~~l~s~~~----dg~i~iwd~~~~~~~~~~~~~~~~~~~ 295 (540)
.|.+|++.++. .+..... |...+..+.|+|||++|+.... +..|.++|+.++.....
T Consensus 205 ~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~---------- 274 (693)
T 3iuj_A 205 TDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLL---------- 274 (693)
T ss_dssp CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCE----------
T ss_pred CCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceE----------
Confidence 39999998764 3333334 5556788999999998764432 34789999876531111
Q ss_pred hcCCceeEEEEeecccccccccCceeeEEEeeeecccccceeeeeeccceeEEEeecccceecccccccccccchhhhhh
Q psy18231 296 EARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALK 375 (540)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (540)
.+.
T Consensus 275 -----------------------------------------------------------------------------~l~ 277 (693)
T 3iuj_A 275 -----------------------------------------------------------------------------TVQ 277 (693)
T ss_dssp -----------------------------------------------------------------------------EEE
T ss_pred -----------------------------------------------------------------------------EEe
Confidence 111
Q ss_pred cccccEEE-EEecCCe-eEeeeC---CCeEEEEeCCCCce--EEeeeC--CceEEEEEecCCcEEEeecCCC---eEEEE
Q psy18231 376 EARDSITS-VHVSDHE-ILTASL---DCRIRRYDIRTGNL--VTDYVG--EPIVDACFTRDCQCILTCSTDE---CLRLF 443 (540)
Q Consensus 376 ~~~~~v~~-l~~~~~~-l~~~~~---dg~i~iwd~~~~~~--~~~~~~--~~i~~~~~sp~~~~l~~~~~dg---~i~i~ 443 (540)
.+...... +....+. ++++.. .+.|..+|+.++.. ...+.. ..+. .|+++++.|+....++ .|++|
T Consensus 278 ~~~~~~~~~~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~~lv~~~~~~g~~~l~~~ 355 (693)
T 3iuj_A 278 GDLDADVSLVDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGSGYLFAEYMVDATARVEQF 355 (693)
T ss_dssp CSSSSCEEEEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEETTEEEEEEEETTEEEEEEE
T ss_pred CCCCceEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEEECCEEEEEEEECCeeEEEEE
Confidence 11122222 1222233 333333 36899999987654 223332 3333 8999998887766543 68999
Q ss_pred eccccchhhhhcc-CcCCcceEEEEecCCCCeEEEeeCC----CcEEEEEecCCcc
Q psy18231 444 DKATGELLEEYKG-HKSGDFRIECCLDSKDSQIFCGSSD----GKIYKWQLVDSSQ 494 (540)
Q Consensus 444 d~~~~~~~~~~~~-~~~~v~~~~~~~s~~~~~l~s~s~d----g~i~iwd~~~~~~ 494 (540)
|+..+. ...+.. ....+..+ .++++++.|+....+ ++|+.||+.+++.
T Consensus 356 d~~g~~-~~~l~~p~~~~~~~~--~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~~ 408 (693)
T 3iuj_A 356 DYEGKR-VREVALPGLGSVSGF--NGKHDDPALYFGFENYAQPPTLYRFEPKSGAI 408 (693)
T ss_dssp CTTSCE-EEEECCSSSSEEEEC--CCCTTCSCEEEEEECSSSCCEEEEECTTTCCE
T ss_pred ECCCCe-eEEeecCCCceEEee--ecCCCCCEEEEEecCCCCCCEEEEEECCCCeE
Confidence 987543 333322 22223333 667888876665544 7899999877653
|
| >1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1 | Back alignment and structure |
|---|
Probab=99.44 E-value=1e-11 Score=116.31 Aligned_cols=244 Identities=9% Similarity=0.009 Sum_probs=164.0
Q ss_pred cEEEEcCCCCeeEEEeecCCcceeEEEEeeCCCeEEEee----------CCCeEEEEEcCCCceeEecccc-------CC
Q psy18231 187 KIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGA----------SDKSVILWEVTTGQPVRRWREH-------AS 249 (540)
Q Consensus 187 ~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s----------~dg~i~iwd~~~~~~~~~~~~h-------~~ 249 (540)
+|.++|..+++.+.++..-..+ .+.++||+++++.+. .++.|.+||+.+++.+..+.-+ ..
T Consensus 47 ~vsvID~~t~~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~ 124 (368)
T 1mda_H 47 ENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGP 124 (368)
T ss_dssp EEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSC
T ss_pred eEEEEECCCCeEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCC
Confidence 8889999999999999765555 799999999998886 3689999999999999887643 13
Q ss_pred ceeEEEECCCCCEEEEecC--CCcEEE--EEecCCCCCCcchhhhhHhhhhcCCceeEEEEeecccccccccCceeeEEE
Q psy18231 250 KVTCVKFNEDSSVVISGSQ--DNTVMM--WDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHLSNGLLTKLVF 325 (540)
Q Consensus 250 ~v~~~~~~~~~~~l~s~~~--dg~i~i--wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (540)
....++++|||++++++.. +..+.+ +|+.+ . ..+.
T Consensus 125 ~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t-v-~~i~--------------------------------------- 163 (368)
T 1mda_H 125 RVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD-D-QLTK--------------------------------------- 163 (368)
T ss_dssp CTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE-E-EEEE---------------------------------------
T ss_pred CcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh-c-eEEE---------------------------------------
Confidence 4678999999999998864 356888 77654 1 0000
Q ss_pred eeeecccccceeeeeeccceeEEEeecccceecccccccccccchhhhhhcccccEEEEEecC-CeeEeeeCCCeEEEEe
Q psy18231 326 AFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEARDSITSVHVSD-HEILTASLDCRIRRYD 404 (540)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~-~~l~~~~~dg~i~iwd 404 (540)
. .+. ..+.... ..+++.+.||.+.+.|
T Consensus 164 ------------------------------------------------v---~~~-~~~~p~g~~~~~~~~~dg~~~~vd 191 (368)
T 1mda_H 164 ------------------------------------------------S---ASC-FHIHPGAAATHYLGSCPASLAASD 191 (368)
T ss_dssp ------------------------------------------------C---SSC-CCCEEEETTEEECCCCTTSCEEEE
T ss_pred ------------------------------------------------C---CCc-eEEccCCCeEEEEEcCCCCEEEEE
Confidence 0 000 0011112 3455666788888888
Q ss_pred CCC-----CceEEe----e--eCCceEEEEEecCCcEEEeecCCCeEEEEeccccc--hhhhhcc----------CcCCc
Q psy18231 405 IRT-----GNLVTD----Y--VGEPIVDACFTRDCQCILTCSTDECLRLFDKATGE--LLEEYKG----------HKSGD 461 (540)
Q Consensus 405 ~~~-----~~~~~~----~--~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~----------~~~~v 461 (540)
+++ ++.... + ...+. . ++++..++..+. +.+.+.|..+.. .+..+.. .....
T Consensus 192 ~~~~~~~~~~v~~~~t~~i~vg~~P~---~-~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~ 266 (368)
T 1mda_H 192 LAAAPAAAGIVGAQCTGAQNCSSQAA---Q-ANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGF 266 (368)
T ss_dssp CCSSCCCCEECCCCSCTTSCBCSCCE---E-ETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSS
T ss_pred CccccccCCeEEEEeeeeeeCCCCcc---c-cccCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcc
Confidence 876 443211 1 11333 3 666665555555 999999986532 2222211 01111
Q ss_pred ceEEEEecCCCCeEEEeeC---------CCcEEEEEecCCcceeEEEecccceeeeEEEEcCCCc-EEEeec--CCeeEE
Q psy18231 462 FRIECCLDSKDSQIFCGSS---------DGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRK-HIMSAC--GNNVKL 529 (540)
Q Consensus 462 ~~~~~~~s~~~~~l~s~s~---------dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~-~l~s~~--d~~i~i 529 (540)
..+ ++++|++.++.+.. ++.+.++|+.+.+.+.++.. . .....++|+|||+ ++++.. +++|.+
T Consensus 267 ~~v--~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~v--g-~~p~gi~~s~Dg~~l~va~~~~~~~VsV 341 (368)
T 1mda_H 267 QMV--AKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISN--G-HDSDAIIAAQDGASDNYANSAGTEVLDI 341 (368)
T ss_dssp SCE--EEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEE--E-EEECEEEECCSSSCEEEEEETTTTEEEE
T ss_pred eee--EEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEEC--C-CCcceEEECCCCCEEEEEccCCCCeEEE
Confidence 123 78999998876543 23566999999999988873 2 3689999999997 444443 799999
Q ss_pred EEcccc
Q psy18231 530 WTAEED 535 (540)
Q Consensus 530 w~~~~~ 535 (540)
+|+.+.
T Consensus 342 ID~~t~ 347 (368)
T 1mda_H 342 YDAASD 347 (368)
T ss_dssp EESSSC
T ss_pred EECCCC
Confidence 999764
|
| >3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.43 E-value=6.4e-11 Score=109.55 Aligned_cols=238 Identities=12% Similarity=0.060 Sum_probs=150.2
Q ss_pred eEEEeecCCcceeEEEEeeCCC-eEEEeeCCCeEEEEEcCCCceeEeccccCCceeEEEECCCCCEEEEecCCCcEEEEE
Q psy18231 198 LLKTYGGHAHEVNDATAACDSS-QIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWD 276 (540)
Q Consensus 198 ~~~~~~~h~~~v~~l~~sp~~~-~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd 276 (540)
.+..+...........|+|+++ ++++...++.|..|+. +++ ...+..+...+..++++++|+++++...++.|..|+
T Consensus 36 ~~~~l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~-~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~ 113 (305)
T 3dr2_A 36 RLLTLYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGT-VDVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSD 113 (305)
T ss_dssp CCEEEECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSC-EEEEEESCSCEEEEEECTTSCEEEEETTTTEEEEEC
T ss_pred ceEEEecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCC-EEEEeCCCCccceeeECCCCCEEEEECCCCEEEEEC
Confidence 3444444556677899999998 6677777899999997 454 345556677899999999999777666667899988
Q ss_pred ecCCCCCCcchhhhhHhhhhcCCceeEEEEeecccccccccCceeeEEEeeeecccccceeeeeeccceeEEEeecccce
Q psy18231 277 VKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGST 356 (540)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (540)
.. ++..... ..
T Consensus 114 ~~-g~~~~~~----------------------~~---------------------------------------------- 124 (305)
T 3dr2_A 114 AD-GQAHLLV----------------------GR---------------------------------------------- 124 (305)
T ss_dssp TT-SCEEEEE----------------------CE----------------------------------------------
T ss_pred CC-CCEEEEE----------------------ec----------------------------------------------
Confidence 64 3310000 00
Q ss_pred ecccccccccccchhhhhhcccccEEEEEecC--CeeEe----eeC-------------CCeEEEEeCCCCceEEeeeCC
Q psy18231 357 QIGDVTPISIHNSCFQALKEARDSITSVHVSD--HEILT----ASL-------------DCRIRRYDIRTGNLVTDYVGE 417 (540)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~--~~l~~----~~~-------------dg~i~iwd~~~~~~~~~~~~~ 417 (540)
........+..+++++ .+.++ |.. .+.|..||..+++........
T Consensus 125 ----------------~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~ 188 (305)
T 3dr2_A 125 ----------------YAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMADLD 188 (305)
T ss_dssp ----------------ETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEEEES
T ss_pred ----------------cCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEecCC
Confidence 0000011233455555 33332 221 356788887666544333334
Q ss_pred ceEEEEEecCCcEEEeecCC------CeEEEEeccccchhh---hh-ccCcCCcceEEEEecCCCCeEEEeeCCCcEEEE
Q psy18231 418 PIVDACFTRDCQCILTCSTD------ECLRLFDKATGELLE---EY-KGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKW 487 (540)
Q Consensus 418 ~i~~~~~sp~~~~l~~~~~d------g~i~i~d~~~~~~~~---~~-~~~~~~v~~~~~~~s~~~~~l~s~s~dg~i~iw 487 (540)
....++|+||++.|+.+... +.|++||+..+. +. .+ .........+ +++++|++. +++.+ .|.+|
T Consensus 189 ~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~-l~~~~~~~~~~~~~pdgi--~~d~~G~lw-v~~~~-gv~~~ 263 (305)
T 3dr2_A 189 HPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGA-LHDRRHFASVPDGLPDGF--CVDRGGWLW-SSSGT-GVCVF 263 (305)
T ss_dssp SEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTE-EEEEEEEECCSSSCCCSE--EECTTSCEE-ECCSS-EEEEE
T ss_pred CCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCC-ccCCeEEEECCCCCCCeE--EECCCCCEE-EecCC-cEEEE
Confidence 57889999999988777665 789999987543 11 11 1112223345 788999844 44454 49999
Q ss_pred EecCCcceeEEEecccceeeeEEEEcCCCcEEEeecCCeeEEEE
Q psy18231 488 QLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWT 531 (540)
Q Consensus 488 d~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~d~~i~iw~ 531 (540)
+. +++.+..+. .+. .+.+++|+|+++.|..++.+.+..++
T Consensus 264 ~~-~g~~~~~~~--~~~-~~~~~~f~~d~~~L~it~~~~l~~~~ 303 (305)
T 3dr2_A 264 DS-DGQLLGHIP--TPG-TASNCTFDQAQQRLFITGGPCLWMLP 303 (305)
T ss_dssp CT-TSCEEEEEE--CSS-CCCEEEECTTSCEEEEEETTEEEEEE
T ss_pred CC-CCCEEEEEE--CCC-ceeEEEEeCCCCEEEEEcCCeEEEEE
Confidence 96 688887776 333 58999999999888877734443333
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} | Back alignment and structure |
|---|
Probab=99.40 E-value=7.9e-10 Score=101.81 Aligned_cols=229 Identities=11% Similarity=0.059 Sum_probs=155.1
Q ss_pred cCeEEEEeCCCCCEEEEeeCCCcEEEEcCCCCeeEE-EeecCCcceeEEEEeeCCCeEEEeeCCCeEEEEEcCCCceeEe
Q psy18231 165 SGLMHTRFPVDGSYCLTCGSDKKIKLWNPYRNLLLK-TYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPVRR 243 (540)
Q Consensus 165 ~~v~~v~~spdg~~lat~~~dg~i~iwd~~~~~~~~-~~~~h~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~ 243 (540)
..+.+++++++|++.++...++.|..||.. ++... .+......+.++++.++++++++...++.|..+|.. ++....
T Consensus 62 ~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~ 139 (300)
T 2qc5_A 62 AKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGFTEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEY 139 (300)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEE
T ss_pred CcceeEEECCCCCEEEEecCCCeEEEECCC-CCeEEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEc
Confidence 568899999999987777667899999987 55432 222244678999999999988887778899999987 655432
Q ss_pred -ccccCCceeEEEECCCCCEEEEecCCCcEEEEEecCCCCCCcchhhhhHhhhhcCCceeEEEEeecccccccccCceee
Q psy18231 244 -WREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHLSNGLLTK 322 (540)
Q Consensus 244 -~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (540)
+......+..+++.+++++.++...++.|..+|. +++....
T Consensus 140 ~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~------------------------------------- 181 (300)
T 2qc5_A 140 DLPNKGSYPAFITLGSDNALWFTENQNNSIGRITN-TGKLEEY------------------------------------- 181 (300)
T ss_dssp ECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEE-------------------------------------
T ss_pred cCCCCCCCceeEEECCCCCEEEEecCCCeEEEECC-CCcEEEe-------------------------------------
Confidence 3334567899999999997776666788888887 3331000
Q ss_pred EEEeeeecccccceeeeeeccceeEEEeecccceecccccccccccchhhhhhcccccEEEEEecC-CeeEee-eCCCeE
Q psy18231 323 LVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEARDSITSVHVSD-HEILTA-SLDCRI 400 (540)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~-~~l~~~-~~dg~i 400 (540)
....+...+.++++++ ..+.++ ...+.|
T Consensus 182 --------------------------------------------------~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i 211 (300)
T 2qc5_A 182 --------------------------------------------------PLPTNAAAPVGITSGNDGALWFVEIMGNKI 211 (300)
T ss_dssp --------------------------------------------------ECSSTTCCEEEEEECTTSSEEEEETTTTEE
T ss_pred --------------------------------------------------eCCCCCCCcceEEECCCCCEEEEccCCCEE
Confidence 0011123566788876 344444 456789
Q ss_pred EEEeCCCCceEEe-ee--CCceEEEEEecCCcEEEeecCCCeEEEEeccccchhh-hhccCcCCcceEEEEecCCCCeEE
Q psy18231 401 RRYDIRTGNLVTD-YV--GEPIVDACFTRDCQCILTCSTDECLRLFDKATGELLE-EYKGHKSGDFRIECCLDSKDSQIF 476 (540)
Q Consensus 401 ~iwd~~~~~~~~~-~~--~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~-~~~~~~~~v~~~~~~~s~~~~~l~ 476 (540)
.+||. +++.... .. ...+.+++++++|++.++...++.|..||. +++... .+......+..+ +++++|++.+
T Consensus 212 ~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i--~~~~~g~l~v 287 (300)
T 2qc5_A 212 GRITT-TGEISEYDIPTPNARPHAITAGKNSEIWFTEWGANQIGRITN-DNTIQEYQLQTENAEPHGI--TFGKDGSVWF 287 (300)
T ss_dssp EEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECT-TSCEEEEECCSTTCCCCCE--EECTTSCEEE
T ss_pred EEEcC-CCcEEEEECCCCCCCceEEEECCCCCEEEeccCCCeEEEECC-CCcEEEEECCccCCcccee--EeCCCCCEEE
Confidence 99998 4544332 22 256889999999997777767799999998 443321 122223345556 7888888666
Q ss_pred EeeCCCcEEEEEe
Q psy18231 477 CGSSDGKIYKWQL 489 (540)
Q Consensus 477 s~s~dg~i~iwd~ 489 (540)
+.. . .|..+|.
T Consensus 288 ~~~-~-~i~~~~p 298 (300)
T 2qc5_A 288 ALK-C-KIGKLNL 298 (300)
T ss_dssp ECS-S-EEEEEEE
T ss_pred Ecc-C-ceEEeCC
Confidence 554 4 6777765
|
| >3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B | Back alignment and structure |
|---|
Probab=99.39 E-value=1.1e-10 Score=107.59 Aligned_cols=220 Identities=11% Similarity=0.125 Sum_probs=146.9
Q ss_pred eEEEEeCCCC-CEEEEeeCCCcEEEEcCCCCeeEEEeecCCcceeEEEEeeCCCeEEEeeCCCeEEEEEcCCCceeEecc
Q psy18231 167 LMHTRFPVDG-SYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPVRRWR 245 (540)
Q Consensus 167 v~~v~~spdg-~~lat~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~ 245 (540)
.-+..|+|++ .++++...++.|..||..+++. ..+. ....+.+++++++|+++++. ++.|.+||.++++......
T Consensus 15 ~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~-~~~~-~~~~~~~i~~~~dG~l~v~~--~~~l~~~d~~~g~~~~~~~ 90 (297)
T 3g4e_A 15 GESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQV-QRVT-MDAPVSSVALRQSGGYVATI--GTKFCALNWKEQSAVVLAT 90 (297)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEETTTCCE-EEEE-CSSCEEEEEEBTTSSEEEEE--TTEEEEEETTTTEEEEEEE
T ss_pred ccCCeEECCCCEEEEEECCCCEEEEEECCCCcE-EEEe-CCCceEEEEECCCCCEEEEE--CCeEEEEECCCCcEEEEEe
Confidence 4577889864 4555666789999999987765 3333 45789999999999965554 5689999998876543222
Q ss_pred c----cCCceeEEEECCCCCEEEEecCC---------CcEEEEEecCCCCCCcchhhhhHhhhhcCCceeEEEEeecccc
Q psy18231 246 E----HASKVTCVKFNEDSSVVISGSQD---------NTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTK 312 (540)
Q Consensus 246 ~----h~~~v~~~~~~~~~~~l~s~~~d---------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (540)
. ....++.++++|+|+++++...+ ..-.+|.+..... ..
T Consensus 91 ~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~--~~-------------------------- 142 (297)
T 3g4e_A 91 VDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHH--VK-------------------------- 142 (297)
T ss_dssp CCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSC--EE--------------------------
T ss_pred cCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCC--EE--------------------------
Confidence 1 13457899999999866654221 2234554432210 00
Q ss_pred cccccCceeeEEEeeeecccccceeeeeeccceeEEEeecccceecccccccccccchhhhhhcccccEEEEEecC--Ce
Q psy18231 313 NHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEARDSITSVHVSD--HE 390 (540)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~--~~ 390 (540)
.+..+......++|+| +.
T Consensus 143 ------------------------------------------------------------~~~~~~~~pngi~~spdg~~ 162 (297)
T 3g4e_A 143 ------------------------------------------------------------KYFDQVDISNGLDWSLDHKI 162 (297)
T ss_dssp ------------------------------------------------------------EEEEEESBEEEEEECTTSCE
T ss_pred ------------------------------------------------------------EEeeccccccceEEcCCCCE
Confidence 0011122346788887 44
Q ss_pred e-EeeeCCCeEEEEeC--CCCceE-----EeeeC--CceEEEEEecCCcEEEeecCCCeEEEEeccccchhhhhccCcCC
Q psy18231 391 I-LTASLDCRIRRYDI--RTGNLV-----TDYVG--EPIVDACFTRDCQCILTCSTDECLRLFDKATGELLEEYKGHKSG 460 (540)
Q Consensus 391 l-~~~~~dg~i~iwd~--~~~~~~-----~~~~~--~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~ 460 (540)
+ ++.+.++.|.+||+ .++... ..+.. .....++++++|++.++...++.|..||..+++.+..+..+...
T Consensus 163 lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~~p~~~ 242 (297)
T 3g4e_A 163 FYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTVKLPVDK 242 (297)
T ss_dssp EEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEEEECSSSB
T ss_pred EEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEEEECCCCC
Confidence 4 55566889999987 455432 22221 45788999999998888778889999999989988888777655
Q ss_pred cceEEEEec-CCCCeEEEeeC
Q psy18231 461 DFRIECCLD-SKDSQIFCGSS 480 (540)
Q Consensus 461 v~~~~~~~s-~~~~~l~s~s~ 480 (540)
++++ +|. |+++.|+.++.
T Consensus 243 ~t~~--~f~g~d~~~L~vt~~ 261 (297)
T 3g4e_A 243 TTSC--CFGGKNYSEMYVTCA 261 (297)
T ss_dssp EEEE--EEESGGGCEEEEEEB
T ss_pred ceEE--EEeCCCCCEEEEEcC
Confidence 6665 887 78877665543
|
| >3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* | Back alignment and structure |
|---|
Probab=99.37 E-value=1.6e-11 Score=127.07 Aligned_cols=239 Identities=10% Similarity=0.123 Sum_probs=152.0
Q ss_pred cCCcceeEEEEeeCCCeEEE-----eeCCCeEEEEEcCCCceeEeccccCCceeEEEECCCCCEEEEecCCCc-------
Q psy18231 204 GHAHEVNDATAACDSSQIAS-----GASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNT------- 271 (540)
Q Consensus 204 ~h~~~v~~l~~sp~~~~l~s-----~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~------- 271 (540)
+|...+..++|||||++||- |+.+.+|++||+.+++.+... .+......++|+ |++.|+.++.+..
T Consensus 126 ~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~-~~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~ 203 (693)
T 3iuj_A 126 DGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETP-LKDVKFSGISWL-GNEGFFYSSYDKPDGSELSA 203 (693)
T ss_dssp TSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEE-EEEEESCCCEEE-TTTEEEEEESSCCC------
T ss_pred CCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccc-cCCceeccEEEe-CCCEEEEEEecCcccccccc
Confidence 35567888999999999884 333468999999999865431 111123578899 9999988887743
Q ss_pred ------EEEEEecCCCCCCcchhhhhHhhhhcCCceeEEEEeecccccccccCceeeEEEeeeecccccceeeeeeccce
Q psy18231 272 ------VMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQH 345 (540)
Q Consensus 272 ------i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (540)
|++|++.+.......
T Consensus 204 ~~~~~~v~~~~lgt~~~~~~~----------------------------------------------------------- 224 (693)
T 3iuj_A 204 RTDQHKVYFHRLGTAQEDDRL----------------------------------------------------------- 224 (693)
T ss_dssp -CCCCEEEEEETTSCGGGCEE-----------------------------------------------------------
T ss_pred cCCCcEEEEEECCCCcccceE-----------------------------------------------------------
Confidence 777777655311000
Q ss_pred eEEEeecccceecccccccccccchhhhhhc-ccccEEEEEecC--CeeEeee----CCCeEEEEeCCCCc-eEEeeeC-
Q psy18231 346 LMVLLDFLGSTQIGDVTPISIHNSCFQALKE-ARDSITSVHVSD--HEILTAS----LDCRIRRYDIRTGN-LVTDYVG- 416 (540)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~l~~~~--~~l~~~~----~dg~i~iwd~~~~~-~~~~~~~- 416 (540)
+..... |.....++.++| ++++... .+..|+++|+.++. ....+..
T Consensus 225 -------------------------v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~ 279 (693)
T 3iuj_A 225 -------------------------VFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGD 279 (693)
T ss_dssp -------------------------EESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECS
T ss_pred -------------------------EEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCC
Confidence 001122 334456778887 5454332 23589999998763 2333332
Q ss_pred -CceEEEEEecCCcEEEeec-C---CCeEEEEeccccch--hhhhccCcCCcceEEEEecCCCCeEEEeeCCC---cEEE
Q psy18231 417 -EPIVDACFTRDCQCILTCS-T---DECLRLFDKATGEL--LEEYKGHKSGDFRIECCLDSKDSQIFCGSSDG---KIYK 486 (540)
Q Consensus 417 -~~i~~~~~sp~~~~l~~~~-~---dg~i~i~d~~~~~~--~~~~~~~~~~v~~~~~~~s~~~~~l~s~s~dg---~i~i 486 (540)
...... ++++|..|+..+ . .+.|..+|+.++.. ...+..|...+ + .|++++++|+....++ .|++
T Consensus 280 ~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~--~--~~s~~g~~lv~~~~~~g~~~l~~ 354 (693)
T 3iuj_A 280 LDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQV--L--TVHSGSGYLFAEYMVDATARVEQ 354 (693)
T ss_dssp SSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSC--E--EEEEETTEEEEEEEETTEEEEEE
T ss_pred CCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCE--E--EEEEECCEEEEEEEECCeeEEEE
Confidence 233333 666666555443 3 36799999987654 34566666554 2 6788888877665544 6889
Q ss_pred EEecCCcceeEEEecccceeeeEEEEcCCCcEEEeec-C----CeeEEEEcccc
Q psy18231 487 WQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC-G----NNVKLWTAEED 535 (540)
Q Consensus 487 wd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~-d----~~i~iw~~~~~ 535 (540)
||+. +.....+.. .+.+.+..+.++++++.|+... + ++|..||+.++
T Consensus 355 ~d~~-g~~~~~l~~-p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g 406 (693)
T 3iuj_A 355 FDYE-GKRVREVAL-PGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSG 406 (693)
T ss_dssp ECTT-SCEEEEECC-SSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTC
T ss_pred EECC-CCeeEEeec-CCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCC
Confidence 9876 444455542 3456788888899987766554 4 78999998654
|
| >1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=99.37 E-value=5.9e-11 Score=121.64 Aligned_cols=296 Identities=12% Similarity=0.112 Sum_probs=179.4
Q ss_pred CCEEEEeeCCCcEEEEcCCCCeeEEEeecCCcc-----------eeEEEEeeCCCeEEEeeCCCeEEEEEcCCCceeEec
Q psy18231 176 GSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHE-----------VNDATAACDSSQIASGASDKSVILWEVTTGQPVRRW 244 (540)
Q Consensus 176 g~~lat~~~dg~i~iwd~~~~~~~~~~~~h~~~-----------v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~ 244 (540)
+..|++++.++.|.-+|..+|+.+.++...... ...+++ ++..|+.++.|+.|..+|..+|+.+..+
T Consensus 77 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~--~~~~v~v~~~dg~l~alD~~tG~~~W~~ 154 (677)
T 1kb0_A 77 DGIMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVAL--WKGKVYVGAWDGRLIALDAATGKEVWHQ 154 (677)
T ss_dssp TTEEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceE--ECCEEEEEcCCCEEEEEECCCCCEEeee
Confidence 456777777899999999999999888643211 112333 4668888999999999999999998877
Q ss_pred ccc-C----CceeE-EEECCCCCEEEEecC------CCcEEEEEecCCCCCCcchhhhhHhhhhcCCceeEEEEeecccc
Q psy18231 245 REH-A----SKVTC-VKFNEDSSVVISGSQ------DNTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTK 312 (540)
Q Consensus 245 ~~h-~----~~v~~-~~~~~~~~~l~s~~~------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (540)
..+ . ..+.. ... .+..++.++. +|.|..+|..+++..-..
T Consensus 155 ~~~~~~~~~~~~~~~p~v--~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~-------------------------- 206 (677)
T 1kb0_A 155 NTFEGQKGSLTITGAPRV--FKGKVIIGNGGAEYGVRGYITAYDAETGERKWRW-------------------------- 206 (677)
T ss_dssp ETTTTCCSSCBCCSCCEE--ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEE--------------------------
T ss_pred cCCcCcCcCcccccCcEE--ECCEEEEEecccccCCCCEEEEEECCCCcEEEEe--------------------------
Confidence 644 1 11111 111 2345555543 689999999998731000
Q ss_pred cccccCceeeEEEeeeecccccceeeeeeccceeEEEeecccceecccccccccccchhhhhhcccccEEEEEecC--Ce
Q psy18231 313 NHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEARDSITSVHVSD--HE 390 (540)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~--~~ 390 (540)
............... .......|. ...... ...........+++++ +.
T Consensus 207 -----------------~~~~~~~~~~~~~~~-------~~~g~~~w~-----~~g~~~-~~~~g~~~w~~~~~d~~~~~ 256 (677)
T 1kb0_A 207 -----------------FSVPGDPSKPFEDES-------MKRAARTWD-----PSGKWW-EAGGGGTMWDSMTFDAELNT 256 (677)
T ss_dssp -----------------ESSCCCTTSCCSSHH-------HHHHHTTSC-----GGGCHH-HHCEECCCCSCEEEETTTTE
T ss_pred -----------------ccCCCCccccccccc-------ccccccccc-----ccCcee-EeCCCcccccceeEcCCCCE
Confidence 000000000000000 000000000 000000 0001111222455555 66
Q ss_pred eEeeeCCC-------------------eEEEEeCCCCceEEeeeC--C---------ceEEEEEecCC---cEEEeecCC
Q psy18231 391 ILTASLDC-------------------RIRRYDIRTGNLVTDYVG--E---------PIVDACFTRDC---QCILTCSTD 437 (540)
Q Consensus 391 l~~~~~dg-------------------~i~iwd~~~~~~~~~~~~--~---------~i~~~~~sp~~---~~l~~~~~d 437 (540)
+++++.++ .|..+|.++++.+..+.. + ....+....+| +.++.++.+
T Consensus 257 vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~ 336 (677)
T 1kb0_A 257 MYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKN 336 (677)
T ss_dssp EEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTT
T ss_pred EEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCC
Confidence 66666553 599999999998877652 1 12233444577 689999999
Q ss_pred CeEEEEeccccchhhhhccCcCC-----------c------------------------ceEEEEecCCCCeEEEeeC--
Q psy18231 438 ECLRLFDKATGELLEEYKGHKSG-----------D------------------------FRIECCLDSKDSQIFCGSS-- 480 (540)
Q Consensus 438 g~i~i~d~~~~~~~~~~~~~~~~-----------v------------------------~~~~~~~s~~~~~l~s~s~-- 480 (540)
|.++++|..+|+.+..+...... + ..+ +++|++.++++...
T Consensus 337 G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~--a~dp~~~~~yv~~~~~ 414 (677)
T 1kb0_A 337 GFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPM--SFNPQTGLVYLPAQNV 414 (677)
T ss_dssp SEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCC--EEETTTTEEEEEEEEC
T ss_pred CEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCc--eEcCCCCEEEEeChhc
Confidence 99999999999887554321100 0 022 68888888877543
Q ss_pred -----------------------------------------CCcEEEEEecCCcceeEEEecccceeeeEEEEcCCCcEE
Q psy18231 481 -----------------------------------------DGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHI 519 (540)
Q Consensus 481 -----------------------------------------dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l 519 (540)
.|.|..||+.+++.+-... +..++....++.++.++
T Consensus 415 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~---~~~~~~~g~~~~~g~~v 491 (677)
T 1kb0_A 415 PVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVE---HVSPWNGGTLTTAGNVV 491 (677)
T ss_dssp CCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEE---ESSSCCCCEEEETTTEE
T ss_pred ceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCcEEeecC---CCCCCcCcceEeCCCEE
Confidence 2789999999999988876 33344555566778888
Q ss_pred Eeec-CCeeEEEEccccc
Q psy18231 520 MSAC-GNNVKLWTAEEDY 536 (540)
Q Consensus 520 ~s~~-d~~i~iw~~~~~~ 536 (540)
+.++ |+.+++||.+++.
T Consensus 492 ~~g~~dg~l~a~D~~tG~ 509 (677)
T 1kb0_A 492 FQGTADGRLVAYHAATGE 509 (677)
T ss_dssp EEECTTSEEEEEETTTCC
T ss_pred EEECCCCcEEEEECCCCc
Confidence 8888 9999999998763
|
| >2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 | Back alignment and structure |
|---|
Probab=99.37 E-value=2.2e-10 Score=106.96 Aligned_cols=220 Identities=11% Similarity=0.092 Sum_probs=141.2
Q ss_pred eeEEEEeeCC-CeEEEeeCCCeEEEEEcCCCceeEeccccCCceeEEEECCCCCEEEEecCCCcEEEEEecCCCCCCcch
Q psy18231 209 VNDATAACDS-SQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQV 287 (540)
Q Consensus 209 v~~l~~sp~~-~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 287 (540)
..+..|+|++ .++++...++.|..||..+++.. .+. ....+.++.|+++++++++. .+ .|.+||..+++...+.
T Consensus 51 ~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~~-~~~~v~~i~~~~dg~l~v~~-~~-gl~~~d~~~g~~~~~~- 125 (326)
T 2ghs_A 51 GEGPTFDPASGTAWWFNILERELHELHLASGRKT-VHA-LPFMGSALAKISDSKQLIAS-DD-GLFLRDTATGVLTLHA- 125 (326)
T ss_dssp EEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EEE-CSSCEEEEEEEETTEEEEEE-TT-EEEEEETTTCCEEEEE-
T ss_pred CcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEE-EEE-CCCcceEEEEeCCCeEEEEE-CC-CEEEEECCCCcEEEEe-
Confidence 4567899974 45666667889999999877543 232 35679999999999877754 44 4889998766521000
Q ss_pred hhhhHhhhhcCCceeEEEEeecccccccccCceeeEEEeeeecccccceeeeeeccceeEEEeecccceecccccccccc
Q psy18231 288 RCLNEALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIH 367 (540)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (540)
.
T Consensus 126 ---------------------------------------------------------------~---------------- 126 (326)
T 2ghs_A 126 ---------------------------------------------------------------E---------------- 126 (326)
T ss_dssp ---------------------------------------------------------------C----------------
T ss_pred ---------------------------------------------------------------e----------------
Confidence 0
Q ss_pred cchhhhhhcccccEEEEEecC-CeeEeeeC-------CCeEEEEeCCCCceEEeeeC-CceEEEEEecCCcEEEee-cCC
Q psy18231 368 NSCFQALKEARDSITSVHVSD-HEILTASL-------DCRIRRYDIRTGNLVTDYVG-EPIVDACFTRDCQCILTC-STD 437 (540)
Q Consensus 368 ~~~~~~~~~~~~~v~~l~~~~-~~l~~~~~-------dg~i~iwd~~~~~~~~~~~~-~~i~~~~~sp~~~~l~~~-~~d 437 (540)
. ........+.++.+++ ..+..++. .+.|..++ +++....... .....++|+|+++.++.+ +.+
T Consensus 127 ---~-~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~~~~~~~~~~~i~~s~dg~~lyv~~~~~ 200 (326)
T 2ghs_A 127 ---L-ESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVTKLFADISIPNSICFSPDGTTGYFVDTKV 200 (326)
T ss_dssp ---S-STTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEEEEEEEESSEEEEEECTTSCEEEEEETTT
T ss_pred ---C-CCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEEEeeCCCcccCCeEEcCCCCEEEEEECCC
Confidence 0 0000123567778877 33444432 24566666 4544322222 456789999999876554 557
Q ss_pred CeEEEEecc--cc-ch-----hhhhccCcCCcceEEEEecCCCCeEEEeeCCCcEEEEEecCCcceeEEEecccceeeeE
Q psy18231 438 ECLRLFDKA--TG-EL-----LEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNS 509 (540)
Q Consensus 438 g~i~i~d~~--~~-~~-----~~~~~~~~~~v~~~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~ 509 (540)
+.|.+||+. ++ +. +..+......... ++++++|.+.++...++.|.+||. +++.+..+. .+...+++
T Consensus 201 ~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~g--i~~d~~G~lwva~~~~~~v~~~d~-~g~~~~~i~--~~~~~~~~ 275 (326)
T 2ghs_A 201 NRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDG--SVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYE--VPGKQTTC 275 (326)
T ss_dssp CEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEE--EEECTTSCEEEEEETTTEEEEECT-TCCEEEEEE--CSCSBEEE
T ss_pred CEEEEEEcccccCCcccCceEEEECCCCCCCCCe--eEECCCCCEEEEEeCCCEEEEECC-CCCEEEEEE--CCCCCcEE
Confidence 899999986 55 32 1112212222333 478899987777767789999997 677777776 55567999
Q ss_pred EEEc-CCCcEEEeec
Q psy18231 510 LCSH-PTRKHIMSAC 523 (540)
Q Consensus 510 l~~s-~d~~~l~s~~ 523 (540)
++|+ |+++.|+.++
T Consensus 276 ~af~g~d~~~L~vt~ 290 (326)
T 2ghs_A 276 PAFIGPDASRLLVTS 290 (326)
T ss_dssp EEEESTTSCEEEEEE
T ss_pred EEEecCCCCEEEEEe
Confidence 9998 8887665444
|
| >2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.37 E-value=8.3e-13 Score=125.43 Aligned_cols=206 Identities=12% Similarity=0.037 Sum_probs=119.7
Q ss_pred CCCeEEEeeCCCeEEEEEcCCCceeEeccccCCceeEEEECCCCCEEEEecCCCcEEEEEecCCCCCCcchhhhhHhhhh
Q psy18231 217 DSSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQVRCLNEALKE 296 (540)
Q Consensus 217 ~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 296 (540)
++..+++++.||.|..||..+|+.+..+.. +.+.+..+..++..+++++.||.|..||..+++..........
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~----- 80 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIP----- 80 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHH-----
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCc-----
Confidence 577899999999999999999999988765 5565555666777888888999999999988763111000000
Q ss_pred cCCceeEEEEeecccccccccCceeeEEEeeeecccccceeeeeeccceeEEEeecccceecccccccccccchhhhhhc
Q psy18231 297 ARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKE 376 (540)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (540)
...
T Consensus 81 ----------------------------------------------------------------------------~~~- 83 (369)
T 2hz6_A 81 ----------------------------------------------------------------------------ELV- 83 (369)
T ss_dssp ----------------------------------------------------------------------------HHH-
T ss_pred ----------------------------------------------------------------------------ccc-
Confidence 000
Q ss_pred ccccEEEEEe-cCCeeEeeeCCCeEEEEeCCCCceEEeeeCCceEEEEEecCCcEEEeecCCCeEEEEeccccchhhhhc
Q psy18231 377 ARDSITSVHV-SDHEILTASLDCRIRRYDIRTGNLVTDYVGEPIVDACFTRDCQCILTCSTDECLRLFDKATGELLEEYK 455 (540)
Q Consensus 377 ~~~~v~~l~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~ 455 (540)
...+ .+ ....+++++.|+.++.||.++|+.+..+..+. ...++|++..+++++.|+.|+.||.++++.+..+.
T Consensus 84 ~~sp----~~~~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~--~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~~~ 157 (369)
T 2hz6_A 84 QASP----CRSSDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF--ADSLSPSTSLLYLGRTEYTITMYDTKTRELRWNAT 157 (369)
T ss_dssp TTCS----CC-----CCCCEEEEEEEEECCC------------------------EEEEEEEEEEECCCSSSSSCCCEEE
T ss_pred ccCc----eEecCCEEEEEeCCCEEEEEECCCCcEEEEecCCC--cccccccCCEEEEEecCCEEEEEECCCCCEEEeEe
Confidence 0000 11 23567788889999999999999887776543 24556788899999999999999999998876665
Q ss_pred cCcCCcceEEEEecCCC---CeEEEeeCCCcEEEEEecCCcceeEEEecccceeeeEEEEcCCCcE
Q psy18231 456 GHKSGDFRIECCLDSKD---SQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKH 518 (540)
Q Consensus 456 ~~~~~v~~~~~~~s~~~---~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~ 518 (540)
.+.. ... +++.+. ..+++++.||.|+.||..+++.+.... .....+....++++|..
T Consensus 158 ~~~~--~~~--~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~--~~~pv~~~~~~~~dg~~ 217 (369)
T 2hz6_A 158 YFDY--AAS--LPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQN--YASPVVAFYVWQREGLR 217 (369)
T ss_dssp EEEE--CCB--CCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEE--CSSCEEEEEECTTSSCE
T ss_pred cccc--cCc--cccCCccccceEEEECCCCEEEEEECCCCcEEEEec--CCCceEEEEEecCCceE
Confidence 3321 111 233332 567888999999999999999888776 33333344566677753
|
| >3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.36 E-value=1.5e-10 Score=107.07 Aligned_cols=221 Identities=10% Similarity=0.094 Sum_probs=143.9
Q ss_pred eecCeEEEEeCCCCC-EEEEeeCCCcEEEEcCCCCeeEEEeecCCcceeEEEEeeCCCeEEEeeCCCeEEEEEcCCCcee
Q psy18231 163 VLSGLMHTRFPVDGS-YCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPV 241 (540)
Q Consensus 163 h~~~v~~v~~spdg~-~lat~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~ 241 (540)
.........|+|+|+ +++++..++.|..|+. +++ ...+..+...+..++++++|+++++...++.|.+|+.. ++..
T Consensus 43 ~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~-~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~-g~~~ 119 (305)
T 3dr2_A 43 QATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGT-VDVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD-GQAH 119 (305)
T ss_dssp CCSSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSC-EEEEEESCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEE
T ss_pred CCcCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCC-EEEEeCCCCccceeeECCCCCEEEEECCCCEEEEECCC-CCEE
Confidence 445667899999998 5567777899999997 454 34555567789999999999977776667899999985 5533
Q ss_pred Eeccc----cCCceeEEEECCCCCEEEE----ecC-------------CCcEEEEEecCCCCCCcchhhhhHhhhhcCCc
Q psy18231 242 RRWRE----HASKVTCVKFNEDSSVVIS----GSQ-------------DNTVMMWDVKSRSHHPIQVRCLNEALKEARDS 300 (540)
Q Consensus 242 ~~~~~----h~~~v~~~~~~~~~~~l~s----~~~-------------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 300 (540)
..... ....+..++++++|++.++ |.. .+.|..||..+++. .
T Consensus 120 ~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~--~--------------- 182 (305)
T 3dr2_A 120 LLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPL--Q--------------- 182 (305)
T ss_dssp EEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCC--E---------------
T ss_pred EEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcE--E---------------
Confidence 22211 1234678999999987776 332 12344444333321 0
Q ss_pred eeEEEEeecccccccccCceeeEEEeeeecccccceeeeeeccceeEEEeecccceecccccccccccchhhhhhccccc
Q psy18231 301 ITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEARDS 380 (540)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (540)
.+. ....
T Consensus 183 ------------------------------------------------------------------------~~~-~~~~ 189 (305)
T 3dr2_A 183 ------------------------------------------------------------------------RMA-DLDH 189 (305)
T ss_dssp ------------------------------------------------------------------------EEE-EESS
T ss_pred ------------------------------------------------------------------------EEe-cCCC
Confidence 000 1123
Q ss_pred EEEEEecC--CeeEeeeCC------CeEEEEeCCCCceE--Eee---eCCceEEEEEecCCcEEEeecCCCeEEEEeccc
Q psy18231 381 ITSVHVSD--HEILTASLD------CRIRRYDIRTGNLV--TDY---VGEPIVDACFTRDCQCILTCSTDECLRLFDKAT 447 (540)
Q Consensus 381 v~~l~~~~--~~l~~~~~d------g~i~iwd~~~~~~~--~~~---~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~ 447 (540)
...++|+| +.|+++... +.|.+|++..+... ..+ .......++++++|++.++. .+ .|.+||. +
T Consensus 190 p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~lwv~~-~~-gv~~~~~-~ 266 (305)
T 3dr2_A 190 PNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGWLWSSS-GT-GVCVFDS-D 266 (305)
T ss_dssp EEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSCEEECC-SS-EEEEECT-T
T ss_pred CcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCCEEEec-CC-cEEEECC-C
Confidence 45678887 456666554 78999998765411 111 12345678999999955544 44 4999997 5
Q ss_pred cchhhhhccCcCCcceEEEEecCCCCeEEEeeCCC
Q psy18231 448 GELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDG 482 (540)
Q Consensus 448 ~~~~~~~~~~~~~v~~~~~~~s~~~~~l~s~s~dg 482 (540)
++.+..+..+. .+..+ +|+++++.|+.++.++
T Consensus 267 g~~~~~~~~~~-~~~~~--~f~~d~~~L~it~~~~ 298 (305)
T 3dr2_A 267 GQLLGHIPTPG-TASNC--TFDQAQQRLFITGGPC 298 (305)
T ss_dssp SCEEEEEECSS-CCCEE--EECTTSCEEEEEETTE
T ss_pred CCEEEEEECCC-ceeEE--EEeCCCCEEEEEcCCe
Confidence 66666666554 35555 7889998888887764
|
| >1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=99.36 E-value=6.8e-11 Score=121.46 Aligned_cols=296 Identities=13% Similarity=0.119 Sum_probs=176.2
Q ss_pred CCEEEEeeCCCcEEEEcCCCCeeEEEeecCCcc----------e-eEEEEeeCCCeEEEeeCCCeEEEEEcCCCceeEec
Q psy18231 176 GSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHE----------V-NDATAACDSSQIASGASDKSVILWEVTTGQPVRRW 244 (540)
Q Consensus 176 g~~lat~~~dg~i~iwd~~~~~~~~~~~~h~~~----------v-~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~ 244 (540)
+..|++++.++.|.-+|..+|+.+.++..+... + ..++. ++..|+.++.|+.|..+|..+|+.+..+
T Consensus 70 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~v~v~~~dg~l~AlDa~TG~~~W~~ 147 (689)
T 1yiq_A 70 DGVMYTTGPFSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAV--WKGKVYVGVLDGRLEAIDAKTGQRAWSV 147 (689)
T ss_dssp TTEEEEECGGGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred CCEEEEEcCCCeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEE--ECCEEEEEccCCEEEEEECCCCCEeeee
Confidence 556777777899999999999999988643221 1 11222 4667888999999999999999998776
Q ss_pred ccc--CCceeEEEECC---CCCEEEEec------CCCcEEEEEecCCCCCCcchhhhhHhhhhcCCceeEEEEeeccccc
Q psy18231 245 REH--ASKVTCVKFNE---DSSVVISGS------QDNTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKN 313 (540)
Q Consensus 245 ~~h--~~~v~~~~~~~---~~~~l~s~~------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (540)
... ......+..+| ++ .++.++ .+|.|..||.++++..-.. ......+..
T Consensus 148 ~~~~~~~~~~~~~~sP~v~~g-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~------------------~~~~~~p~~ 208 (689)
T 1yiq_A 148 DTRADHKRSYTITGAPRVVNG-KVVIGNGGAEFGVRGYVTAYDAETGKEAWRF------------------YTVPGDPKL 208 (689)
T ss_dssp ECCSCTTSCCBCCSCCEEETT-EEEECCBCTTTCCBCEEEEEETTTCCEEEEE------------------ESSCCCTTS
T ss_pred cCcCCCCCCccccCCcEEECC-EEEEEeCCCccCCCCEEEEEECCCCcEEEEe------------------cccCCCccc
Confidence 532 11111112222 44 444443 3689999999998731100 000000000
Q ss_pred ccccCceeeEEEeeeecccccceeeeeeccceeEEEeecccceecccccccccccchhhhhhcccccEEEEEecC--Cee
Q psy18231 314 HLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEARDSITSVHVSD--HEI 391 (540)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~--~~l 391 (540)
. .... .+. .....+ .+........+......+++++ +++
T Consensus 209 ~--------------------------~~~~-~~~-----~~~~~~-------~g~~w~~~~~g~~~w~~~~~d~~~~~v 249 (689)
T 1yiq_A 209 P--------------------------PEGK-GME-----IAAKTW-------FGDAYVEQGGGGTAWDSFAYDPELNLL 249 (689)
T ss_dssp C--------------------------CCSH-HHH-----HHHTTC-------CSSTHHHHCEECCCCSCEEEETTTTEE
T ss_pred c--------------------------cccc-ccc-----cccccc-------CCceeeecCCCCccccceeEcCCCCEE
Confidence 0 0000 000 000000 0000000001111112455655 677
Q ss_pred EeeeCCC-------------------eEEEEeCCCCceEEeeeC--C---------ceEEEEEecCCc---EEEeecCCC
Q psy18231 392 LTASLDC-------------------RIRRYDIRTGNLVTDYVG--E---------PIVDACFTRDCQ---CILTCSTDE 438 (540)
Q Consensus 392 ~~~~~dg-------------------~i~iwd~~~~~~~~~~~~--~---------~i~~~~~sp~~~---~l~~~~~dg 438 (540)
++++.++ .|..+|.++|+.+-.+.. + +........+|+ .++.++.+|
T Consensus 250 y~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G 329 (689)
T 1yiq_A 250 YIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNG 329 (689)
T ss_dssp EEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTS
T ss_pred EEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCC
Confidence 7777665 499999999999877653 1 122223334665 788999999
Q ss_pred eEEEEeccccchhhhhccCc--------------------------C------------C-cceEEEEecCCCCeEEEee
Q psy18231 439 CLRLFDKATGELLEEYKGHK--------------------------S------------G-DFRIECCLDSKDSQIFCGS 479 (540)
Q Consensus 439 ~i~i~d~~~~~~~~~~~~~~--------------------------~------------~-v~~~~~~~s~~~~~l~s~s 479 (540)
.++++|..+|+.+....... . . -..+ +++|+..++++.+
T Consensus 330 ~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~--a~dp~~~~~yv~~ 407 (689)
T 1yiq_A 330 FFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPM--SYNPDTGLVYIPA 407 (689)
T ss_dssp EEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCC--EEETTTTEEEEEE
T ss_pred eEEEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcc--eECCCCCEEEEec
Confidence 99999999998763211100 0 0 0113 6888888777653
Q ss_pred C---------------------------------------------CCcEEEEEecCCcceeEEEecccceeeeEEEEcC
Q psy18231 480 S---------------------------------------------DGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHP 514 (540)
Q Consensus 480 ~---------------------------------------------dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~ 514 (540)
. +|.|+.||+.+++.+-++. .+ .++..-.++.
T Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~--~~-~~~~~g~~~t 484 (689)
T 1yiq_A 408 HIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVP--YV-TIFNGGTLST 484 (689)
T ss_dssp EECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEE--ES-SSCCCCEEEE
T ss_pred cccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCCCCeEeEcc--CC-CCccCccceE
Confidence 2 4789999999999988887 23 2333345666
Q ss_pred CCcEEEeec-CCeeEEEEccccc
Q psy18231 515 TRKHIMSAC-GNNVKLWTAEEDY 536 (540)
Q Consensus 515 d~~~l~s~~-d~~i~iw~~~~~~ 536 (540)
.+.+++.++ |+.|+.||.+++.
T Consensus 485 agglvf~gt~dg~l~a~D~~tG~ 507 (689)
T 1yiq_A 485 AGNLVFEGSADGRVIAYAADTGE 507 (689)
T ss_dssp TTTEEEEECTTSEEEEEETTTCC
T ss_pred CCCEEEEECCCCcEEEEECCCCc
Confidence 788899999 9999999998763
|
| >3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A | Back alignment and structure |
|---|
Probab=99.34 E-value=2.4e-10 Score=109.26 Aligned_cols=266 Identities=7% Similarity=0.019 Sum_probs=168.3
Q ss_pred CCCEEEEeeCCCcEEEEcCCCCeeEEEeecCC---------cceeEEEEeeCCCeEEEeeCCCeEEEEEcCCCceeEecc
Q psy18231 175 DGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHA---------HEVNDATAACDSSQIASGASDKSVILWEVTTGQPVRRWR 245 (540)
Q Consensus 175 dg~~lat~~~dg~i~iwd~~~~~~~~~~~~h~---------~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~ 245 (540)
++..|++++.++.|..+|.++++.+..+.... ..+.+ ....++..++.++.++.|..+|..+|+.+....
T Consensus 52 ~~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~v~~~~g~l~a~d~~tG~~~W~~~ 130 (376)
T 3q7m_A 52 ADNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSG-GVTVSGGHVYIGSEKAQVYALNTSDGTVAWQTK 130 (376)
T ss_dssp ETTEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEE-EEEEETTEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred ECCEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCccccc-CceEeCCEEEEEcCCCEEEEEECCCCCEEEEEe
Confidence 45678888889999999999999887775421 22222 222246678888899999999999999887665
Q ss_pred ccCCceeEEEECCCCCEEEEecCCCcEEEEEecCCCCCCcchhhhhHhhhhcCCceeEEEEeecccccccccCceeeEEE
Q psy18231 246 EHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHLSNGLLTKLVF 325 (540)
Q Consensus 246 ~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (540)
............ +..++.++.++.|..+|..+++..-..
T Consensus 131 ~~~~~~~~p~~~--~~~v~v~~~~g~l~~~d~~tG~~~W~~--------------------------------------- 169 (376)
T 3q7m_A 131 VAGEALSRPVVS--DGLVLIHTSNGQLQALNEADGAVKWTV--------------------------------------- 169 (376)
T ss_dssp CSSCCCSCCEEE--TTEEEEECTTSEEEEEETTTCCEEEEE---------------------------------------
T ss_pred CCCceEcCCEEE--CCEEEEEcCCCeEEEEECCCCcEEEEE---------------------------------------
Confidence 433222222222 447788888999999999887621000
Q ss_pred eeeecccccceeeeeeccceeEEEeecccceecccccccccccchhhhhhcccccEEEEEecCCeeEeeeCCCeEEEEeC
Q psy18231 326 AFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEARDSITSVHVSDHEILTASLDCRIRRYDI 405 (540)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~dg~i~iwd~ 405 (540)
.... ........ .........+++++.++.+..+|.
T Consensus 170 ---------------------------~~~~-------------~~~~~~~~----~~~~~~~~~v~~g~~~g~l~~~d~ 205 (376)
T 3q7m_A 170 ---------------------------NLDM-------------PSLSLRGE----SAPTTAFGAAVVGGDNGRVSAVLM 205 (376)
T ss_dssp ---------------------------ECCC------------------CCC----CCCEEETTEEEECCTTTEEEEEET
T ss_pred ---------------------------eCCC-------------CceeecCC----CCcEEECCEEEEEcCCCEEEEEEC
Confidence 0000 00000000 111222467888888999999999
Q ss_pred CCCceEEeeeCCce------E---EEEEec--CCcEEEeecCCCeEEEEeccccchhhhhccCcCCcceEEEEecCCCCe
Q psy18231 406 RTGNLVTDYVGEPI------V---DACFTR--DCQCILTCSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQ 474 (540)
Q Consensus 406 ~~~~~~~~~~~~~i------~---~~~~sp--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~s~~~~~ 474 (540)
.+++.+.......- . .+.-.| .+..+++++.++.+..+|..+++.+...... ....+ ..++..
T Consensus 206 ~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG~~~w~~~~~--~~~~~----~~~~~~ 279 (376)
T 3q7m_A 206 EQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQIMWKRELG--SVNDF----IVDGNR 279 (376)
T ss_dssp TTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEETTTCCEEEEECCC--CEEEE----EEETTE
T ss_pred CCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEECCCCcEEeeccCC--CCCCc----eEECCE
Confidence 99998776653110 0 011111 3456777778999999999999877554422 12222 234668
Q ss_pred EEEeeCCCcEEEEEecCCcceeEEEecccceeeeEEEEcCCCcEEEeec-CCeeEEEEcccc
Q psy18231 475 IFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC-GNNVKLWTAEED 535 (540)
Q Consensus 475 l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~-d~~i~iw~~~~~ 535 (540)
++.++.++.|..+|..+++.+..... .....+...... +..|+.++ +|.|.++|..++
T Consensus 280 l~~~~~~g~l~~~d~~tG~~~w~~~~-~~~~~~~~~~~~--~~~l~v~~~~g~l~~~d~~tG 338 (376)
T 3q7m_A 280 IYLVDQNDRVMALTIDGGVTLWTQSD-LLHRLLTSPVLY--NGNLVVGDSEGYLHWINVEDG 338 (376)
T ss_dssp EEEEETTCCEEEEETTTCCEEEEECT-TTTSCCCCCEEE--TTEEEEECTTSEEEEEETTTC
T ss_pred EEEEcCCCeEEEEECCCCcEEEeecc-cCCCcccCCEEE--CCEEEEEeCCCeEEEEECCCC
Confidence 88888999999999999988766541 111222333332 45677777 999999998765
|
| >1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1 | Back alignment and structure |
|---|
Probab=99.34 E-value=4.3e-11 Score=112.05 Aligned_cols=265 Identities=10% Similarity=-0.018 Sum_probs=167.9
Q ss_pred eeeeeccccccee--ee-eecCeEEEEeCCCCCEEEEee----------CCCcEEEEcCCCCeeEEEeecC-------Cc
Q psy18231 148 SIRVYRPLTVNRE--LF-VLSGLMHTRFPVDGSYCLTCG----------SDKKIKLWNPYRNLLLKTYGGH-------AH 207 (540)
Q Consensus 148 ~i~~~~~~~~~~~--~~-h~~~v~~v~~spdg~~lat~~----------~dg~i~iwd~~~~~~~~~~~~h-------~~ 207 (540)
++.+.+..+.+.. +. -..+ .+.|+|||++++++. .++.|.+||+.+++.+.++... ..
T Consensus 47 ~vsvID~~t~~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~ 124 (368)
T 1mda_H 47 ENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGP 124 (368)
T ss_dssp EEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSC
T ss_pred eEEEEECCCCeEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCC
Confidence 5667776664422 11 1234 799999999999886 3689999999999999998643 13
Q ss_pred ceeEEEEeeCCCeEEEeeC--CCeEEE--EEcCCCceeEeccccCCceeEEEECCCC-CEEEEecCCCcEEEEEecC---
Q psy18231 208 EVNDATAACDSSQIASGAS--DKSVIL--WEVTTGQPVRRWREHASKVTCVKFNEDS-SVVISGSQDNTVMMWDVKS--- 279 (540)
Q Consensus 208 ~v~~l~~sp~~~~l~s~s~--dg~i~i--wd~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~s~~~dg~i~iwd~~~--- 279 (540)
....++++|||++++++.. +..|.+ +|+.+ +..+.- .+. ..+.|++ ..+++.+.||.+.+.|+.+
T Consensus 125 ~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v-~~~---~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~ 197 (368)
T 1mda_H 125 RVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD---DQLTKS-ASC---FHIHPGAAATHYLGSCPASLAASDLAAAPA 197 (368)
T ss_dssp CTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE---EEEEEC-SSC---CCCEEEETTEEECCCCTTSCEEEECCSSCC
T ss_pred CcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh---ceEEEC-CCc---eEEccCCCeEEEEEcCCCCEEEEECccccc
Confidence 4568999999999998875 467888 99877 344421 111 1123443 3455667788888888876
Q ss_pred --CCCCCcchhhhhHhhhhcCCceeEEEEeecccccccccCceeeEEEeeeecccccceeeeeeccceeEEEeeccccee
Q psy18231 280 --RSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQ 357 (540)
Q Consensus 280 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (540)
++.....
T Consensus 198 ~~~~v~~~~----------------------------------------------------------------------- 206 (368)
T 1mda_H 198 AAGIVGAQC----------------------------------------------------------------------- 206 (368)
T ss_dssp CCEECCCCS-----------------------------------------------------------------------
T ss_pred cCCeEEEEe-----------------------------------------------------------------------
Confidence 2110000
Q ss_pred cccccccccccchhhhhhcccccEEEEEecCCeeEeeeCCCeEEEEeCCCCc--eEEeee------------CCceEEEE
Q psy18231 358 IGDVTPISIHNSCFQALKEARDSITSVHVSDHEILTASLDCRIRRYDIRTGN--LVTDYV------------GEPIVDAC 423 (540)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~dg~i~iwd~~~~~--~~~~~~------------~~~i~~~~ 423 (540)
. ....-...+. . ...++.++..+. +.+.+.|..+.. .+..+. ......++
T Consensus 207 ---------t----~~i~vg~~P~-~-~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~ 270 (368)
T 1mda_H 207 ---------T----GAQNCSSQAA-Q-ANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVA 270 (368)
T ss_dssp ---------C----TTSCBCSCCE-E-ETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEE
T ss_pred ---------e----eeeeCCCCcc-c-cccCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeE
Confidence 0 0000011122 1 112244444445 889999986542 222221 01122268
Q ss_pred EecCCcEEEeecC---------CCeEEEEeccccchhhhhccCcCCcceEEEEecCCCCe-EEEee-CCCcEEEEEecCC
Q psy18231 424 FTRDCQCILTCST---------DECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQ-IFCGS-SDGKIYKWQLVDS 492 (540)
Q Consensus 424 ~sp~~~~l~~~~~---------dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~s~~~~~-l~s~s-~dg~i~iwd~~~~ 492 (540)
++|+++.++++.. ++.+.++|+.+++.+..+..... ...+ ++++||++ +++.. .++.|.++|+.++
T Consensus 271 ~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~~-p~gi--~~s~Dg~~l~va~~~~~~~VsVID~~t~ 347 (368)
T 1mda_H 271 KLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGHD-SDAI--IAAQDGASDNYANSAGTEVLDIYDAASD 347 (368)
T ss_dssp EETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEEE-ECEE--EECCSSSCEEEEEETTTTEEEEEESSSC
T ss_pred EcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECCCC-cceE--EECCCCCEEEEEccCCCCeEEEEECCCC
Confidence 9999988887543 23567999999999888875543 3445 89999985 55555 5999999999999
Q ss_pred cceeEEEecccceeeeEEEEcC
Q psy18231 493 SQISTLIHSVGKAVVNSLCSHP 514 (540)
Q Consensus 493 ~~~~~~~~~~~~~~v~~l~~s~ 514 (540)
+.+.++. .+ .....+++.+
T Consensus 348 kvv~~I~--vg-~~P~~i~~~~ 366 (368)
T 1mda_H 348 QDQSSVE--LD-KGPESLSVQN 366 (368)
T ss_dssp EEEEECC--CC-SCCCEEECCC
T ss_pred cEEEEEE--CC-CCCCEEEeec
Confidence 9998887 22 3344555543
|
| >2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 | Back alignment and structure |
|---|
Probab=99.32 E-value=6.6e-10 Score=103.67 Aligned_cols=218 Identities=11% Similarity=0.041 Sum_probs=141.3
Q ss_pred eEEEEeCCCCC-EEEEeeCCCcEEEEcCCCCeeEEEeecCCcceeEEEEeeCCCeEEEeeCCCeEEEEEcCCCceeEecc
Q psy18231 167 LMHTRFPVDGS-YCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPVRRWR 245 (540)
Q Consensus 167 v~~v~~spdg~-~lat~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~ 245 (540)
..+.+|+|++. ++++...++.|..||..+++.. .+. ....+.+++|+|+|+++++. .+ .|.+||..+++......
T Consensus 51 ~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~~-~~~~v~~i~~~~dg~l~v~~-~~-gl~~~d~~~g~~~~~~~ 126 (326)
T 2ghs_A 51 GEGPTFDPASGTAWWFNILERELHELHLASGRKT-VHA-LPFMGSALAKISDSKQLIAS-DD-GLFLRDTATGVLTLHAE 126 (326)
T ss_dssp EEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EEE-CSSCEEEEEEEETTEEEEEE-TT-EEEEEETTTCCEEEEEC
T ss_pred CcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEE-EEE-CCCcceEEEEeCCCeEEEEE-CC-CEEEEECCCCcEEEEee
Confidence 34678999754 5556667889999999877643 333 35679999999999877765 44 49999998887543221
Q ss_pred c----cCCceeEEEECCCCCEEEEecCC----CcEEEEEecCCCCCCcchhhhhHhhhhcCCceeEEEEeeccccccccc
Q psy18231 246 E----HASKVTCVKFNEDSSVVISGSQD----NTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHLSN 317 (540)
Q Consensus 246 ~----h~~~v~~~~~~~~~~~l~s~~~d----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (540)
. ....+..+.++|+|+++++...+ +...+|.+.+++. .
T Consensus 127 ~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~~g~~---~------------------------------- 172 (326)
T 2ghs_A 127 LESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKV---T------------------------------- 172 (326)
T ss_dssp SSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTEE---E-------------------------------
T ss_pred CCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEeCCcE---E-------------------------------
Confidence 1 12468899999999876654321 2234444432210 0
Q ss_pred CceeeEEEeeeecccccceeeeeeccceeEEEeecccceecccccccccccchhhhhhcccccEEEEEecC--Cee-Eee
Q psy18231 318 GLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEARDSITSVHVSD--HEI-LTA 394 (540)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~--~~l-~~~ 394 (540)
.+..+......++|++ +.+ ++.
T Consensus 173 -------------------------------------------------------~~~~~~~~~~~i~~s~dg~~lyv~~ 197 (326)
T 2ghs_A 173 -------------------------------------------------------KLFADISIPNSICFSPDGTTGYFVD 197 (326)
T ss_dssp -------------------------------------------------------EEEEEESSEEEEEECTTSCEEEEEE
T ss_pred -------------------------------------------------------EeeCCCcccCCeEEcCCCCEEEEEE
Confidence 0001112345778887 344 444
Q ss_pred eCCCeEEEEeCC--CC-ce-----EEeee--CCceEEEEEecCCcEEEeecCCCeEEEEeccccchhhhhccCcCCcceE
Q psy18231 395 SLDCRIRRYDIR--TG-NL-----VTDYV--GEPIVDACFTRDCQCILTCSTDECLRLFDKATGELLEEYKGHKSGDFRI 464 (540)
Q Consensus 395 ~~dg~i~iwd~~--~~-~~-----~~~~~--~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~ 464 (540)
+.++.|.+||++ ++ +. ...+. ......++++++|++.++...++.|.+||. +++.+..+..+...+.++
T Consensus 198 ~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~-~g~~~~~i~~~~~~~~~~ 276 (326)
T 2ghs_A 198 TKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEVPGKQTTCP 276 (326)
T ss_dssp TTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEECSCSBEEEE
T ss_pred CCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECC-CCCEEEEEECCCCCcEEE
Confidence 567899999986 55 32 22222 245678999999998877767789999998 577666666655555555
Q ss_pred EEEec-CCCCeEEEeeC
Q psy18231 465 ECCLD-SKDSQIFCGSS 480 (540)
Q Consensus 465 ~~~~s-~~~~~l~s~s~ 480 (540)
+|+ ++++.|+.++.
T Consensus 277 --af~g~d~~~L~vt~~ 291 (326)
T 2ghs_A 277 --AFIGPDASRLLVTSA 291 (326)
T ss_dssp --EEESTTSCEEEEEEB
T ss_pred --EEecCCCCEEEEEec
Confidence 787 88777655543
|
| >1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A | Back alignment and structure |
|---|
Probab=99.31 E-value=8.2e-11 Score=114.39 Aligned_cols=267 Identities=9% Similarity=0.024 Sum_probs=168.6
Q ss_pred CCCCEEEEeeC-CCcEEEEcCCCCeeEEEeec-CCcceeEEEE-e-eCCCeEEEee------------------CCCeEE
Q psy18231 174 VDGSYCLTCGS-DKKIKLWNPYRNLLLKTYGG-HAHEVNDATA-A-CDSSQIASGA------------------SDKSVI 231 (540)
Q Consensus 174 pdg~~lat~~~-dg~i~iwd~~~~~~~~~~~~-h~~~v~~l~~-s-p~~~~l~s~s------------------~dg~i~ 231 (540)
+||++|.+... ++.|.+.|+.+.+..+.+.- .......+++ + |+++++++++ .++.+.
T Consensus 99 ~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vt 178 (595)
T 1fwx_A 99 YDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFT 178 (595)
T ss_dssp EEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEE
T ss_pred cCCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEE
Confidence 38999887665 55799999999998885532 2345788888 5 8999998884 346899
Q ss_pred EEEcCCCceeEeccccCCceeEEEECCCCCEEEEecCCCcEE-EEEecCCCCCCcchhhhhHhhhhcCCceeEEEEeecc
Q psy18231 232 LWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVM-MWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKS 310 (540)
Q Consensus 232 iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~-iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (540)
+.|..+.+...++.--. ....++++|+|+++++.+.+..-- ..+..+.+
T Consensus 179 vID~~t~~v~~qI~Vgg-~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~----------------------------- 228 (595)
T 1fwx_A 179 AVDADKWEVAWQVLVSG-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAA----------------------------- 228 (595)
T ss_dssp EEETTTTEEEEEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCC-----------------------------
T ss_pred EEECCCCeEEEEEEeCC-CccceEECCCCCEEEEEecCcccCcchhhcccc-----------------------------
Confidence 99999998888775322 456788999999999888653210 00000000
Q ss_pred cccccccCceeeEEEeeeecccccceeeeeeccceeEEEeecccceecccccccccccchhhhhhcccccEEEEEecCCe
Q psy18231 311 TKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEARDSITSVHVSDHE 390 (540)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~ 390 (540)
....+.+.+.... ...... .+.
T Consensus 229 --------------------------------~~d~v~V~~~~~~---------------~~~v~~-----------Gk~ 250 (595)
T 1fwx_A 229 --------------------------------EMDHIVVFNIAEI---------------EKAIAA-----------GDY 250 (595)
T ss_dssp --------------------------------SEEEEEEEEHHHH---------------HHHHHH-----------TCS
T ss_pred --------------------------------ccceEEEeeccce---------------eEeccC-----------CCe
Confidence 0000000000000 000000 011
Q ss_pred eEeeeCCCeEEEEeCCC--Cce-EEeee-CCceEEEEEecCCcEEEeec-CCCeEEEEeccccch------------hhh
Q psy18231 391 ILTASLDCRIRRYDIRT--GNL-VTDYV-GEPIVDACFTRDCQCILTCS-TDECLRLFDKATGEL------------LEE 453 (540)
Q Consensus 391 l~~~~~dg~i~iwd~~~--~~~-~~~~~-~~~i~~~~~sp~~~~l~~~~-~dg~i~i~d~~~~~~------------~~~ 453 (540)
... +.|.+.|.++ ++. +..+. +....++.++|||+++++++ .+.+|.++|+.+.+. +.+
T Consensus 251 ~~i----~~V~VID~~~~~~~~~~~~Ipvg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~ 326 (595)
T 1fwx_A 251 QEL----NGVKVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAE 326 (595)
T ss_dssp EEE----TTEEEEECSGGGCCSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEEC
T ss_pred eEE----CcEEEEeCcccCCceeEEEEecCCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEE
Confidence 111 4599999998 544 44553 46788999999999877665 588999999987642 122
Q ss_pred hccCcCCcceEEEEecCCCCeEEEeeCCCcEEEEEecC----------CcceeEEEec---ccceeeeEEEEcCCCcEEE
Q psy18231 454 YKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVD----------SSQISTLIHS---VGKAVVNSLCSHPTRKHIM 520 (540)
Q Consensus 454 ~~~~~~~v~~~~~~~s~~~~~l~s~s~dg~i~iwd~~~----------~~~~~~~~~~---~~~~~v~~l~~s~d~~~l~ 520 (540)
...-.+ -...+|+++|...++.-.|++|.+||+.+ .+.+.++... +|...-..+.++|||++|+
T Consensus 327 v~vG~g---P~h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~ 403 (595)
T 1fwx_A 327 PELGLG---PLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLV 403 (595)
T ss_dssp CBCCSC---EEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEE
T ss_pred cCCCCC---cceEEECCCCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCEEE
Confidence 222222 23348999994455667899999999987 4566666621 2222223345689999999
Q ss_pred eec--C-Cee-----------EEEEcccc
Q psy18231 521 SAC--G-NNV-----------KLWTAEED 535 (540)
Q Consensus 521 s~~--d-~~i-----------~iw~~~~~ 535 (540)
++. . ..+ .++|++++
T Consensus 404 ~~Nk~skdr~~~~gp~~~~~~ql~dis~~ 432 (595)
T 1fwx_A 404 CLSKFSKDRFLNVGPLKPENDQLIDISGD 432 (595)
T ss_dssp EEESCCTTSSCCCCSSCCEEEEEEECSSS
T ss_pred EcCCCCccccccCCCCCCCcceEEEcCCC
Confidence 986 3 344 88888543
|
| >2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.30 E-value=5.6e-13 Score=126.60 Aligned_cols=257 Identities=9% Similarity=0.008 Sum_probs=148.5
Q ss_pred CCCEEEEeeCCCcEEEEcCCCCeeEEEeecCCcceeEEEEeeCCCeEEEeeCCCeEEEEEcCCCceeEeccccCCc-ee-
Q psy18231 175 DGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPVRRWREHASK-VT- 252 (540)
Q Consensus 175 dg~~lat~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~-v~- 252 (540)
++..|++++.||.|..||..+|+.+.++.. +.+.+..+..++..+++++.||.|..||.++|+.+..+..+... +.
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~~ 85 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQA 85 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHHHTT
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCcccccc
Confidence 577899999999999999999999998876 56666666778888888899999999999999887666533211 11
Q ss_pred EEEECCCCCEEEEecCCCcEEEEEecCCCCCCcchhhhhHhhhhcCCceeEEEEeecccccccccCceeeEEEeeeeccc
Q psy18231 253 CVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYL 332 (540)
Q Consensus 253 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (540)
...+. ++..+++++.|+.|..||..+++.....
T Consensus 86 sp~~~-~~~~v~~g~~dg~v~a~D~~tG~~~w~~---------------------------------------------- 118 (369)
T 2hz6_A 86 SPCRS-SDGILYMGKKQDIWYVIDLLTGEKQQTL---------------------------------------------- 118 (369)
T ss_dssp CSCC------CCCCEEEEEEEEECCC------------------------------------------------------
T ss_pred CceEe-cCCEEEEEeCCCEEEEEECCCCcEEEEe----------------------------------------------
Confidence 00111 3456788888999999999988731110
Q ss_pred ccceeeeeeccceeEEEeecccceecccccccccccchhhhhhcccccEEEEEecCCeeEeeeCCCeEEEEeCCCCceEE
Q psy18231 333 NGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEARDSITSVHVSDHEILTASLDCRIRRYDIRTGNLVT 412 (540)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 412 (540)
..+. .+ ..+...+.+++++.|+.|+.||.++++.+.
T Consensus 119 ------------------------------------------~~~~-~~-~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W 154 (369)
T 2hz6_A 119 ------------------------------------------SSAF-AD-SLSPSTSLLYLGRTEYTITMYDTKTRELRW 154 (369)
T ss_dssp ----------------------------------------------------------EEEEEEEEEEECCCSSSSSCCC
T ss_pred ------------------------------------------cCCC-cc-cccccCCEEEEEecCCEEEEEECCCCCEEE
Confidence 0000 00 000123678888999999999999998776
Q ss_pred eeeCCceEEEEEecCC---cEEEeecCCCeEEEEeccccchhhhhccCcCCcceEEEEecCCCCeE----EEeeCCCcEE
Q psy18231 413 DYVGEPIVDACFTRDC---QCILTCSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQI----FCGSSDGKIY 485 (540)
Q Consensus 413 ~~~~~~i~~~~~sp~~---~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~s~~~~~l----~s~s~dg~i~ 485 (540)
.+........+++++. ..+++++.||.++.||..+++.+.++... .++.. .+.++++|... +.+ ++.++
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~-~pv~~-~~~~~~dg~~~v~~~~~~--~~~l~ 230 (369)
T 2hz6_A 155 NATYFDYAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQNYA-SPVVA-FYVWQREGLRKVMHINVA--VETLR 230 (369)
T ss_dssp EEEEEEECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEECS-SCEEE-EEECTTSSCEEECCEEEE--HHHHH
T ss_pred eEecccccCccccCCccccceEEEECCCCEEEEEECCCCcEEEEecCC-CceEE-EEEecCCceEeccceeec--cccee
Confidence 6543222233344432 56777889999999999999887766533 33332 23556666432 122 34567
Q ss_pred EEEecCCc----ceeEEEecccceeeeEEEEcCCCcEEEeec-CCeeEEEEcc
Q psy18231 486 KWQLVDSS----QISTLIHSVGKAVVNSLCSHPTRKHIMSAC-GNNVKLWTAE 533 (540)
Q Consensus 486 iwd~~~~~----~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~-d~~i~iw~~~ 533 (540)
.+|..+|+ .+..+.... .+.+.. -.+..|+.++ ||.+..++..
T Consensus 231 ~ld~~tG~~~~~~~W~~~~~~---~~~sp~--~~~g~lyv~~~~G~l~al~~~ 278 (369)
T 2hz6_A 231 YLTFMSGEVGRITKWKYPFPK---ETEAKS--KLTPTLYVGKYSTSLYASPSM 278 (369)
T ss_dssp HHHHHHHHHHHHHTSCCCCCC---HHHHHH--HSEEEECBEECSSCEECCEEE
T ss_pred eeehhcCCcccceeeeeccCc---cccccc--cccceEEEecccCCEEecCcc
Confidence 77776776 444443111 111000 1234566666 8888777765
|
| >3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.26 E-value=1.5e-10 Score=108.39 Aligned_cols=263 Identities=14% Similarity=0.136 Sum_probs=165.8
Q ss_pred CeEEEEeCCCCCEEEEeeCCCcEEEEcCCCCeeEEEeecCCcceeEEEEeeCCCeEEEeeCCCeEEEEEcCCCceeEecc
Q psy18231 166 GLMHTRFPVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPVRRWR 245 (540)
Q Consensus 166 ~v~~v~~spdg~~lat~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~ 245 (540)
.+.++...++|. |..++.+ |..+|. +++.+..+...........+. +..|..++.++.|..+|.. ++......
T Consensus 61 ~~~~~~~~~~g~-l~v~t~~--l~~~d~-~g~~~~~~~~~~~~~~~~~~~--~~~l~v~t~~~~l~~~d~~-g~~~~~~~ 133 (330)
T 3hxj_A 61 IECRPSIGKDGT-IYFGSDK--VYAINP-DGTEKWRFDTKKAIVSDFTIF--EDILYVTSMDGHLYAINTD-GTEKWRFK 133 (330)
T ss_dssp EEECCEETTTTE-ECCSSCE--EEEECC-CGGGGGGSCC-----CCEEEE--TTEEEEECTTSEEEEECTT-SCEEEEEE
T ss_pred cccceEEecCCc-EEEecCc--EEEECC-CCcEEEEEECCCCcccCceEE--CCEEEEEecCCEEEEEcCC-CCEEEEEc
Confidence 356677777775 4445544 888886 665544443333333333443 5567778888999999988 87776666
Q ss_pred ccCCceeEEEECCCCCEEEEecCCCcEEEEEecCCCCCCcchhhhhHhhhhcCCceeEEEEeecccccccccCceeeEEE
Q psy18231 246 EHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHLSNGLLTKLVF 325 (540)
Q Consensus 246 ~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (540)
.+...+.++...+++. ++.++.++.|..+|.. ++....
T Consensus 134 ~~~~~~~~~~~~~~g~-l~vgt~~~~l~~~d~~-g~~~~~---------------------------------------- 171 (330)
T 3hxj_A 134 TKKAIYATPIVSEDGT-IYVGSNDNYLYAINPD-GTEKWR---------------------------------------- 171 (330)
T ss_dssp CSSCCCSCCEECTTSC-EEEECTTSEEEEECTT-SCEEEE----------------------------------------
T ss_pred CCCceeeeeEEcCCCE-EEEEcCCCEEEEECCC-CCEeEE----------------------------------------
Confidence 5566667777777776 5667778889999876 441000
Q ss_pred eeeecccccceeeeeeccceeEEEeecccceecccccccccccchhhhhhcccccEEEEEecC-CeeEeeeCCCeEEEEe
Q psy18231 326 AFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEARDSITSVHVSD-HEILTASLDCRIRRYD 404 (540)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~-~~l~~~~~dg~i~iwd 404 (540)
.......+.++...+ ..+.+++ +.|..+|
T Consensus 172 ------------------------------------------------~~~~~~~~~~~~~d~~g~l~v~t--~~l~~~d 201 (330)
T 3hxj_A 172 ------------------------------------------------FKTNDAITSAASIGKDGTIYFGS--DKVYAIN 201 (330)
T ss_dssp ------------------------------------------------EECSSCCCSCCEECTTCCEEEES--SSEEEEC
T ss_pred ------------------------------------------------EecCCCceeeeEEcCCCEEEEEe--CEEEEEC
Confidence 000011223344433 5566666 7899999
Q ss_pred CCCCceEEeeeC--CceEEEEEecCCcEEEeecCCCeEEEEeccccchhhhhccCcCCcceEEEEecCCCCeEEEeeCCC
Q psy18231 405 IRTGNLVTDYVG--EPIVDACFTRDCQCILTCSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDG 482 (540)
Q Consensus 405 ~~~~~~~~~~~~--~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~s~~~~~l~s~s~dg 482 (540)
.+++....... ..+.++...++|.+ .+++.++.+..+|. +++.+..+.........+ ...+++ .|..++.+|
T Consensus 202 -~~g~~~~~~~~~~~~~~~~~~~~~g~l-~v~t~~~gl~~~~~-~g~~~~~~~~~~~~~~~~--~~~~~g-~l~v~t~~g 275 (330)
T 3hxj_A 202 -PDGTEKWNFYAGYWTVTRPAISEDGTI-YVTSLDGHLYAINP-DGTEKWRFKTGKRIESSP--VIGNTD-TIYFGSYDG 275 (330)
T ss_dssp -TTSCEEEEECCSSCCCSCCEECTTSCE-EEEETTTEEEEECT-TSCEEEEEECSSCCCSCC--EECTTS-CEEEECTTC
T ss_pred -CCCcEEEEEccCCcceeceEECCCCeE-EEEcCCCeEEEECC-CCCEeEEeeCCCCccccc--eEcCCC-eEEEecCCC
Confidence 67776655543 45778888888764 45566778888874 555555554443333333 344444 677788888
Q ss_pred cEEEEEecCCcceeEEEecccceeeeEEEEcCCCcEEEeecCCeeEEEEccccc
Q psy18231 483 KIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDY 536 (540)
Q Consensus 483 ~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~d~~i~iw~~~~~~ 536 (540)
.|..+|. +++.+..+. .....+.++...++|++.+.+.+|.+++...+...
T Consensus 276 gl~~~d~-~g~~~~~~~--~~~~~~~~~~~d~~g~l~~gt~~G~~~~~~~~~~~ 326 (330)
T 3hxj_A 276 HLYAINP-DGTEKWNFE--TGSWIIATPVIDENGTIYFGTRNGKFYALFNLEHH 326 (330)
T ss_dssp EEEEECT-TSCEEEEEE--CSSCCCSCCEECTTCCEEEECTTSCEEEEEC----
T ss_pred CEEEECC-CCcEEEEEE--cCCccccceEEcCCCEEEEEcCCCeEEEEeccccc
Confidence 9999994 777777766 44566788888888886665559999998876544
|
| >2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.15 E-value=8.5e-10 Score=103.76 Aligned_cols=227 Identities=13% Similarity=0.122 Sum_probs=142.9
Q ss_pred cceeEEEEeeCCCeEEEee--CCCeEEEEEcCCCceeEec-------cccCCceeEEEECCCCCEEEEecC-----CCcE
Q psy18231 207 HEVNDATAACDSSQIASGA--SDKSVILWEVTTGQPVRRW-------REHASKVTCVKFNEDSSVVISGSQ-----DNTV 272 (540)
Q Consensus 207 ~~v~~l~~sp~~~~l~s~s--~dg~i~iwd~~~~~~~~~~-------~~h~~~v~~~~~~~~~~~l~s~~~-----dg~i 272 (540)
.....++++|+|+.+++.. .++.++||.+.+++.. .+ ..|-..+..++++++++++++-.. ++.|
T Consensus 17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~~-~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i 95 (343)
T 2qe8_A 17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGLI-PFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKL 95 (343)
T ss_dssp SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEEE-ESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCCEE
T ss_pred CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCCee-cCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCCeE
Confidence 6789999999999988864 2343666666555432 22 234568999999999876665433 5789
Q ss_pred EEEEecCCCCCCcchhhhhHhhhhcCCceeEEEEeecccccccccCceeeEEEeeeecccccceeeeeeccceeEEEeec
Q psy18231 273 MMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDF 352 (540)
Q Consensus 273 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (540)
.+||+.+++..... ..
T Consensus 96 ~~~d~~tg~~~~~~----------------------------------------------------------------~~ 111 (343)
T 2qe8_A 96 VAWDTLNNQLSRVI----------------------------------------------------------------YL 111 (343)
T ss_dssp EEEETTTTEEEEEE----------------------------------------------------------------EC
T ss_pred EEEECCCCeEEEEE----------------------------------------------------------------EC
Confidence 99998776510000 00
Q ss_pred ccceecccccccccccchhhhhhcccccEEEEEecC--Cee-Eeee---CCCeEEEEeCCCCceEEeeeCCc-e--EEEE
Q psy18231 353 LGSTQIGDVTPISIHNSCFQALKEARDSITSVHVSD--HEI-LTAS---LDCRIRRYDIRTGNLVTDYVGEP-I--VDAC 423 (540)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~--~~l-~~~~---~dg~i~iwd~~~~~~~~~~~~~~-i--~~~~ 423 (540)
. .....+...+..+++++ ..+ ++.. .++.|.+||+.+++....+.++. . ....
T Consensus 112 --------------~----~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~ 173 (343)
T 2qe8_A 112 --------------P----PPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDID 173 (343)
T ss_dssp --------------C----TTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCSCC
T ss_pred --------------C----hhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCcccccccc
Confidence 0 00011223446777774 344 4444 57899999999888766664421 1 0145
Q ss_pred EecCCcEEEeecCCCeEEEEeccccchhhhhccCcCCcceEEEEecCCCCeEEEeeCCC-cEEEEEec---CCc-----c
Q psy18231 424 FTRDCQCILTCSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDG-KIYKWQLV---DSS-----Q 494 (540)
Q Consensus 424 ~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~s~~~~~l~s~s~dg-~i~iwd~~---~~~-----~ 494 (540)
+.++|..+.+.+.++.++.|.. ....+ +++|+|+.|+.+..++ .|+.++.. .+. .
T Consensus 174 ~~~~g~~~~~~~~~g~~~~~~~--------------~~~gi--a~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~ 237 (343)
T 2qe8_A 174 LVIDGVPVQIGQPDGTVIRPHL--------------GVNGI--VLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAEL 237 (343)
T ss_dssp CEETTEECBEECTTSCEECCCC--------------CEEEE--EECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHH
T ss_pred eeECCEEEEeccCCCceeceec--------------cccee--EeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhh
Confidence 6667887777778888766531 12345 8999999988887766 44444432 111 0
Q ss_pred eeEEEecccceeeeEEEEcCCCcEEEeec-CCeeEEEEc
Q psy18231 495 ISTLIHSVGKAVVNSLCSHPTRKHIMSAC-GNNVKLWTA 532 (540)
Q Consensus 495 ~~~~~~~~~~~~v~~l~~s~d~~~l~s~~-d~~i~iw~~ 532 (540)
...+...++......++++++|.++++.. ++.|.+|+.
T Consensus 238 ~~~~~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~ 276 (343)
T 2qe8_A 238 GSKIERYSEKPICDGISIDKDHNIYVGDLAHSAIGVITS 276 (343)
T ss_dssp HTTCEEEEECCSCSCEEECTTCCEEEEEGGGTEEEEEET
T ss_pred hcceEecccCCCCceEEECCCCCEEEEccCCCeEEEEEC
Confidence 11111003444577899999999888888 999999998
|
| >3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.14 E-value=3.6e-10 Score=105.78 Aligned_cols=255 Identities=13% Similarity=0.107 Sum_probs=161.2
Q ss_pred EEeCCCCCEEEEeeCCCcEEEEcCCCCeeEEEeecCCcceeEEEEeeCCCeEEEeeCCCeEEEEEcCCCceeEeccccCC
Q psy18231 170 TRFPVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPVRRWREHAS 249 (540)
Q Consensus 170 v~~spdg~~lat~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~ 249 (540)
.....+|. |..++.++.|..|| .+++.+..+..+...+.++...+++. |..++.+ |..+|. +++.+..+.....
T Consensus 25 ~~~d~~g~-l~v~t~~~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~-l~v~t~~--l~~~d~-~g~~~~~~~~~~~ 98 (330)
T 3hxj_A 25 PILAKNGT-IYLGSSNKNLYAIN-TDGSVKWFFKSGEIIECRPSIGKDGT-IYFGSDK--VYAINP-DGTEKWRFDTKKA 98 (330)
T ss_dssp CEECTTSC-EECSSTTTTTEEEC-TTSCEEESSCGGGEEEECCEETTTTE-ECCSSCE--EEEECC-CGGGGGGSCC---
T ss_pred ceEccCCe-EEEEcCCCEEEEEC-CCCcEEEEEecCCCcccceEEecCCc-EEEecCc--EEEECC-CCcEEEEEECCCC
Confidence 34445664 66677788999999 88888776655555566677766664 5555554 888886 6665544443333
Q ss_pred ceeEEEECCCCCEEEEecCCCcEEEEEecCCCCCCcchhhhhHhhhhcCCceeEEEEeecccccccccCceeeEEEeeee
Q psy18231 250 KVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRC 329 (540)
Q Consensus 250 ~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (540)
......+. +..++.++.++.|..+|.. ++. ..
T Consensus 99 ~~~~~~~~--~~~l~v~t~~~~l~~~d~~-g~~--~~------------------------------------------- 130 (330)
T 3hxj_A 99 IVSDFTIF--EDILYVTSMDGHLYAINTD-GTE--KW------------------------------------------- 130 (330)
T ss_dssp --CCEEEE--TTEEEEECTTSEEEEECTT-SCE--EE-------------------------------------------
T ss_pred cccCceEE--CCEEEEEecCCEEEEEcCC-CCE--EE-------------------------------------------
Confidence 23333333 4567778888889988876 431 00
Q ss_pred cccccceeeeeeccceeEEEeecccceecccccccccccchhhhhhcccccEEEEEecC-CeeEeeeCCCeEEEEeCCCC
Q psy18231 330 KYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEARDSITSVHVSD-HEILTASLDCRIRRYDIRTG 408 (540)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~-~~l~~~~~dg~i~iwd~~~~ 408 (540)
........+.++...+ ..+.+++.++.|..+|.. +
T Consensus 131 -------------------------------------------~~~~~~~~~~~~~~~~~g~l~vgt~~~~l~~~d~~-g 166 (330)
T 3hxj_A 131 -------------------------------------------RFKTKKAIYATPIVSEDGTIYVGSNDNYLYAINPD-G 166 (330)
T ss_dssp -------------------------------------------EEECSSCCCSCCEECTTSCEEEECTTSEEEEECTT-S
T ss_pred -------------------------------------------EEcCCCceeeeeEEcCCCEEEEEcCCCEEEEECCC-C
Confidence 0000011122334443 668888888999999998 7
Q ss_pred ceEEeee--CCceEEEEEecCCcEEEeecCCCeEEEEeccccchhhhhccCcCCcceEEEEecCCCCeEEEeeCCCcEEE
Q psy18231 409 NLVTDYV--GEPIVDACFTRDCQCILTCSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYK 486 (540)
Q Consensus 409 ~~~~~~~--~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~s~~~~~l~s~s~dg~i~i 486 (540)
+....+. ...+.++...+++.+.+.. +.|..+| .+++.+..+......+..+ ...++| .|..++.++.|..
T Consensus 167 ~~~~~~~~~~~~~~~~~~d~~g~l~v~t---~~l~~~d-~~g~~~~~~~~~~~~~~~~--~~~~~g-~l~v~t~~~gl~~ 239 (330)
T 3hxj_A 167 TEKWRFKTNDAITSAASIGKDGTIYFGS---DKVYAIN-PDGTEKWNFYAGYWTVTRP--AISEDG-TIYVTSLDGHLYA 239 (330)
T ss_dssp CEEEEEECSSCCCSCCEECTTCCEEEES---SSEEEEC-TTSCEEEEECCSSCCCSCC--EECTTS-CEEEEETTTEEEE
T ss_pred CEeEEEecCCCceeeeEEcCCCEEEEEe---CEEEEEC-CCCcEEEEEccCCcceece--EECCCC-eEEEEcCCCeEEE
Confidence 7665554 3456777777788765544 7899999 7777665555554556666 566666 4666777888888
Q ss_pred EEecCCcceeEEEecccceeeeEEEEcCCCcEEEeecCCeeEEEEc
Q psy18231 487 WQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTA 532 (540)
Q Consensus 487 wd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~d~~i~iw~~ 532 (540)
+| .+++.+..+. .....+..+.+.+++.+.+...++.|..+|.
T Consensus 240 ~~-~~g~~~~~~~--~~~~~~~~~~~~~~g~l~v~t~~ggl~~~d~ 282 (330)
T 3hxj_A 240 IN-PDGTEKWRFK--TGKRIESSPVIGNTDTIYFGSYDGHLYAINP 282 (330)
T ss_dssp EC-TTSCEEEEEE--CSSCCCSCCEECTTSCEEEECTTCEEEEECT
T ss_pred EC-CCCCEeEEee--CCCCccccceEcCCCeEEEecCCCCEEEECC
Confidence 87 5677766665 3444455666776776554444888888885
|
| >1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=99.14 E-value=8.7e-09 Score=105.51 Aligned_cols=108 Identities=11% Similarity=0.089 Sum_probs=78.6
Q ss_pred eeEeeeCCCeEEEEeCCCCceEEeeeCC--------------ce------------------------EEEEEecCCcEE
Q psy18231 390 EILTASLDCRIRRYDIRTGNLVTDYVGE--------------PI------------------------VDACFTRDCQCI 431 (540)
Q Consensus 390 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~--------------~i------------------------~~~~~sp~~~~l 431 (540)
.++.++.+|.++++|.++|+.+...... ++ ..++++|+..++
T Consensus 316 ~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~~ 395 (668)
T 1kv9_A 316 VLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLV 395 (668)
T ss_dssp EEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEE
T ss_pred EEEEECCCCEEEEEECCCCCEeccccccccccccccccccCCccccccccccCCeeEECCCCccccCCCcceECCCCCEE
Confidence 6888999999999999999987433211 00 126788876665
Q ss_pred Eee------------------------------------cCCCeEEEEeccccchhhhhccCcCCcceEEEEecCCCCeE
Q psy18231 432 LTC------------------------------------STDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQI 475 (540)
Q Consensus 432 ~~~------------------------------------~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~s~~~~~l 475 (540)
++. ..+|.|..||+.+++.+.+...+.. .... .+...+.++
T Consensus 396 yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~~~~~-~~~~--~~~t~gg~v 472 (668)
T 1kv9_A 396 YIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPYPTH-WNGG--TLSTAGNLV 472 (668)
T ss_dssp EEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEESSS-CCCC--EEEETTTEE
T ss_pred EEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCCCCcEEEEccCCCC-CcCc--eeEeCCCEE
Confidence 531 1348899999999998776654433 2222 244567789
Q ss_pred EEeeCCCcEEEEEecCCcceeEEEe
Q psy18231 476 FCGSSDGKIYKWQLVDSSQISTLIH 500 (540)
Q Consensus 476 ~s~s~dg~i~iwd~~~~~~~~~~~~ 500 (540)
+.++.||.|+.||..+++.+..+..
T Consensus 473 f~g~~dg~l~a~d~~tG~~l~~~~~ 497 (668)
T 1kv9_A 473 FQGTAAGQMHAYSADKGEALWQFEA 497 (668)
T ss_dssp EEECTTSEEEEEETTTCCEEEEEEC
T ss_pred EEECCcccchhhhhhcChhheEecC
Confidence 9999999999999999999998874
|
| >1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=99.13 E-value=5.5e-09 Score=106.98 Aligned_cols=296 Identities=12% Similarity=0.105 Sum_probs=171.4
Q ss_pred CCEEEEeeCCCcEEEEcCCCCeeEEEeecCCcc----------e-eEEEEeeCCCeEEEeeCCCeEEEEEcCCCceeEec
Q psy18231 176 GSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHE----------V-NDATAACDSSQIASGASDKSVILWEVTTGQPVRRW 244 (540)
Q Consensus 176 g~~lat~~~dg~i~iwd~~~~~~~~~~~~h~~~----------v-~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~ 244 (540)
+..|++++.++.|.-+|..+|+.+.++...... + ..+++ ++..++.++.|+.|..+|..+|+.+..+
T Consensus 66 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l~alD~~tG~~~W~~ 143 (668)
T 1kv9_A 66 DGVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVAL--WGDKVYVGTLDGRLIALDAKTGKAIWSQ 143 (668)
T ss_dssp TTEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--EBTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred CCEEEEECCCCeEEEEECCCChhceEECCCCCccccccccccCCccceEE--ECCEEEEEcCCCEEEEEECCCCCEeeee
Confidence 456777777899999999999999888543211 0 12233 3567888889999999999999998776
Q ss_pred cccCC-ceeEEEECC--CCCEEEEecC------CCcEEEEEecCCCCCCcchhhhhHhhhhcCCceeEEEEeeccccccc
Q psy18231 245 REHAS-KVTCVKFNE--DSSVVISGSQ------DNTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHL 315 (540)
Q Consensus 245 ~~h~~-~v~~~~~~~--~~~~l~s~~~------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (540)
..... ....+..+| .+..++.+.. +|.|..+|.++++..-.. ......+....
T Consensus 144 ~~~~~~~~~~~~~~P~v~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~------------------~~~~~~p~~~~ 205 (668)
T 1kv9_A 144 QTTDPAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRF------------------YTVPGDPALPY 205 (668)
T ss_dssp ECSCTTSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEE------------------ESSCCCTTSCC
T ss_pred ccCCCCCcceecCCCEEECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEe------------------cccCCCCCccc
Confidence 54210 001111111 1334555543 588999999988731100 00000000000
Q ss_pred ccCceeeEEEeeeecccccceeeeeeccceeEEEeecccceecccccccccccchhhhhhcccccEEEEEecC--CeeEe
Q psy18231 316 SNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEARDSITSVHVSD--HEILT 393 (540)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~--~~l~~ 393 (540)
.. ..+ ......+ .+........+......+++++ +.++.
T Consensus 206 --------------------------~~-~~~-----~~~~~~~-------~g~~~w~~~~gg~~w~~~a~d~~~~~vy~ 246 (668)
T 1kv9_A 206 --------------------------EH-PEL-----REAAKTW-------QGDQYWKLGGGGTVWDSMAYDPELDLLYV 246 (668)
T ss_dssp --------------------------SS-HHH-----HHHHTTC-------CSSCHHHHCEECCCCSCEEEETTTTEEEE
T ss_pred --------------------------cc-ccc-----ccccccC-------CccceeeeCCCCccccceEEcCCCCEEEE
Confidence 00 000 0000000 0000000111112222355655 66777
Q ss_pred eeCCC-------------------eEEEEeCCCCceEEeeeC-----------CceEEEEEecCCc---EEEeecCCCeE
Q psy18231 394 ASLDC-------------------RIRRYDIRTGNLVTDYVG-----------EPIVDACFTRDCQ---CILTCSTDECL 440 (540)
Q Consensus 394 ~~~dg-------------------~i~iwd~~~~~~~~~~~~-----------~~i~~~~~sp~~~---~l~~~~~dg~i 440 (540)
++.++ .|.-+|.++++.+-.+.. .+.....+..+|+ .++.++.+|.+
T Consensus 247 ~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l 326 (668)
T 1kv9_A 247 GTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFF 326 (668)
T ss_dssp ECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEE
T ss_pred eCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEE
Confidence 76665 499999999999877753 1223333445775 68899999999
Q ss_pred EEEeccccchhhhhccCcC------------C------------------------cceEEEEecCCCCeEEEe------
Q psy18231 441 RLFDKATGELLEEYKGHKS------------G------------------------DFRIECCLDSKDSQIFCG------ 478 (540)
Q Consensus 441 ~i~d~~~~~~~~~~~~~~~------------~------------------------v~~~~~~~s~~~~~l~s~------ 478 (540)
+++|..+|+.+...+.... + -..+ +++|+...++..
T Consensus 327 ~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~--a~dp~~g~~yv~~~~~~~ 404 (668)
T 1kv9_A 327 YVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSM--SFNPGTGLVYIPYQEVPG 404 (668)
T ss_dssp EEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCC--EEETTTTEEEEEEEECCE
T ss_pred EEEECCCCCEeccccccccccccccccccCCccccccccccCCeeEECCCCccccCCCcc--eECCCCCEEEEeccccce
Confidence 9999999987632221110 0 0012 567766655531
Q ss_pred ------------------------------eCCCcEEEEEecCCcceeEEEecccceeeeEEEEcCCCcEEEeec-CCee
Q psy18231 479 ------------------------------SSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC-GNNV 527 (540)
Q Consensus 479 ------------------------------s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~-d~~i 527 (540)
..+|.|..||+.+++.+-+... + .+.....+...+.+++.++ |+.|
T Consensus 405 ~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~~--~-~~~~~~~~~t~gg~vf~g~~dg~l 481 (668)
T 1kv9_A 405 VYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPY--P-THWNGGTLSTAGNLVFQGTAAGQM 481 (668)
T ss_dssp EECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEE--S-SSCCCCEEEETTTEEEEECTTSEE
T ss_pred EeeeeccccccccccccCccccccCCCCCCCccceEEEEeCCCCcEEEEccC--C-CCCcCceeEeCCCEEEEECCcccc
Confidence 1348899999999999887762 2 2233334445678888889 9999
Q ss_pred EEEEcccc
Q psy18231 528 KLWTAEED 535 (540)
Q Consensus 528 ~iw~~~~~ 535 (540)
+.||.+++
T Consensus 482 ~a~d~~tG 489 (668)
T 1kv9_A 482 HAYSADKG 489 (668)
T ss_dssp EEEETTTC
T ss_pred hhhhhhcC
Confidence 99998865
|
| >2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=99.13 E-value=1.9e-08 Score=94.47 Aligned_cols=110 Identities=13% Similarity=0.250 Sum_probs=80.6
Q ss_pred EeC--CCCCEEEE-eeCCCcEEEEcCCCC----eeEEEee-------cCCcceeEEEEeeCCCeEEEeeCC------CeE
Q psy18231 171 RFP--VDGSYCLT-CGSDKKIKLWNPYRN----LLLKTYG-------GHAHEVNDATAACDSSQIASGASD------KSV 230 (540)
Q Consensus 171 ~~s--pdg~~lat-~~~dg~i~iwd~~~~----~~~~~~~-------~h~~~v~~l~~sp~~~~l~s~s~d------g~i 230 (540)
.++ +++++|++ +..++.|.++|+.+. +..+++. .-...-..+..+|+| .++++..+ |.|
T Consensus 88 ~~~~~~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v 166 (462)
T 2ece_A 88 NGKPNIERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGI 166 (462)
T ss_dssp TCCTTCCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEE
T ss_pred ccCCCccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeE
Confidence 446 78888765 556889999998765 6666662 111234567788999 77776665 789
Q ss_pred EEEEcCCCceeEeccccC---CceeEEEECCCCCEEEEec-------------------CCCcEEEEEecCCC
Q psy18231 231 ILWEVTTGQPVRRWREHA---SKVTCVKFNEDSSVVISGS-------------------QDNTVMMWDVKSRS 281 (540)
Q Consensus 231 ~iwd~~~~~~~~~~~~h~---~~v~~~~~~~~~~~l~s~~-------------------~dg~i~iwd~~~~~ 281 (540)
.+.|.++++.+..+.... .--..+.|+|+++.+++.. .+.+|.+||+.+++
T Consensus 167 ~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k 239 (462)
T 2ece_A 167 LMLDHYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRK 239 (462)
T ss_dssp EEECTTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTE
T ss_pred EEEECCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCc
Confidence 999999999998886322 2245688899999888874 36789999998753
|
| >2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=99.10 E-value=4.9e-08 Score=91.71 Aligned_cols=126 Identities=10% Similarity=0.029 Sum_probs=83.1
Q ss_pred CCCeEEEEeCCCCceEEeeeCC----ceEEEEE--ecCCcEEEeec------CCCeEEEEeccccc-------------h
Q psy18231 396 LDCRIRRYDIRTGNLVTDYVGE----PIVDACF--TRDCQCILTCS------TDECLRLFDKATGE-------------L 450 (540)
Q Consensus 396 ~dg~i~iwd~~~~~~~~~~~~~----~i~~~~~--sp~~~~l~~~~------~dg~i~i~d~~~~~-------------~ 450 (540)
.+.+|.+||+.+++.+.++.-. ....+.| +|+++++++++ .+++|.+|....++ .
T Consensus 226 ~~d~V~v~D~~~~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v 305 (462)
T 2ece_A 226 YGNRIHFWDLRKRKRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPL 305 (462)
T ss_dssp SCCEEEEEETTTTEEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEEC
T ss_pred cCCEEEEEECCCCcEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccc
Confidence 4789999999999888877642 3445555 99999888877 45678766543321 1
Q ss_pred hhhh-------ccCcCCcceEEEEecCCCCeEEEeeC-CCcEEEEEecCC---cceeEEEeccc------------ceee
Q psy18231 451 LEEY-------KGHKSGDFRIECCLDSKDSQIFCGSS-DGKIYKWQLVDS---SQISTLIHSVG------------KAVV 507 (540)
Q Consensus 451 ~~~~-------~~~~~~v~~~~~~~s~~~~~l~s~s~-dg~i~iwd~~~~---~~~~~~~~~~~------------~~~v 507 (540)
...+ .+-......+ .+|+||++|+++.. .+.|.+||+.+. +.+..+...+. .+..
T Consensus 306 ~~~lp~~~~~f~~~~~~pa~I--~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggP 383 (462)
T 2ece_A 306 EGNLPEILKPFKAVPPLVTDI--DISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAP 383 (462)
T ss_dssp CSSCCGGGGGGTEECCCCCCE--EECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCC
T ss_pred cccccccccccccCCCceeEE--EECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCC
Confidence 1111 0001223445 79999999887764 678999998633 45555553211 0136
Q ss_pred eEEEEcCCCcEEEeec
Q psy18231 508 NSLCSHPTRKHIMSAC 523 (540)
Q Consensus 508 ~~l~~s~d~~~l~s~~ 523 (540)
..++++|||++|+++.
T Consensus 384 r~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 384 QMLEISRDGRRVYVTN 399 (462)
T ss_dssp CCEEECTTSSEEEEEC
T ss_pred CEEEEcCCCCEEEEEc
Confidence 8899999999888775
|
| >4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A* | Back alignment and structure |
|---|
Probab=99.03 E-value=8.8e-07 Score=93.31 Aligned_cols=279 Identities=8% Similarity=0.066 Sum_probs=177.2
Q ss_pred ecCeEEEEeCCCCCEEEEeeCCCcEEEEcCCCCeeEEEeec-------CCcceeEEEEeeCCCeEEEeeCCCeEEEEEcC
Q psy18231 164 LSGLMHTRFPVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGG-------HAHEVNDATAACDSSQIASGASDKSVILWEVT 236 (540)
Q Consensus 164 ~~~v~~v~~spdg~~lat~~~dg~i~iwd~~~~~~~~~~~~-------h~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~ 236 (540)
...|.++...++|.+.+ |+.++-+.+||..+++....... ....|.++...++|.+.+ |+.+ -|.+||..
T Consensus 214 ~~~i~~i~~d~~g~lwi-gt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi-gt~~-Gl~~~~~~ 290 (795)
T 4a2l_A 214 TKQIQAILQQSPTRIWV-ATEGAGLFLINPKTKEIKNYLHSPSNPKSISSNYIRSLAMDSQNRLWI-GTFN-DLNIYHEG 290 (795)
T ss_dssp CCCEEEEEEEETTEEEE-EEBSSCEEEEETTTTEEEEECCCTTCTTSCSCSBEEEEEECTTSCEEE-EESS-CEEEEETT
T ss_pred CCeeEEEEEcCCCCEEE-EECCCCeEEEeCCCCeEEEeecCCCCccccCCCeEEEEEEcCCCCEEE-EeCC-hhheEcCC
Confidence 45688888888887554 44444588899877654433221 135699998888887554 4444 58899987
Q ss_pred CCceeEecc-------ccCCceeEEEECCCCCEEEEecCCCcEEEEEecCCCCCCcchhhhhHhhhhcCCceeEEEEeec
Q psy18231 237 TGQPVRRWR-------EHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVK 309 (540)
Q Consensus 237 ~~~~~~~~~-------~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (540)
+++...... -....|.++...++|. |..|+.++-|..|+..+.......
T Consensus 291 ~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~~~~----------------------- 346 (795)
T 4a2l_A 291 TDSFASYSSNPVENGSLSQRSVRSIFMDSQGG-MWLGTYFGGLNYYHPIRNRFKNIR----------------------- 346 (795)
T ss_dssp TTEEEEECCCTTSTTSCSSSCEEEEEECTTSC-EEEEESSSCEEEECGGGGSSEEEC-----------------------
T ss_pred CCeEEEEecCCCCCCCCCCCcEEEEEEeCCcC-EEEEECCCCeEEeCCCcccceEEc-----------------------
Confidence 765443221 1245799999998886 566777677888886554310000
Q ss_pred ccccccccCceeeEEEeeeecccccceeeeeeccceeEEEeecccceecccccccccccchhhhhhcccccEEEEEecC-
Q psy18231 310 STKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEARDSITSVHVSD- 388 (540)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~- 388 (540)
... ..-.-....|.++..++
T Consensus 347 --------------------------------------------------------~~~---~~~~l~~~~V~~i~~d~~ 367 (795)
T 4a2l_A 347 --------------------------------------------------------NIP---YKNSLSDNVVSCIVEDKD 367 (795)
T ss_dssp --------------------------------------------------------CCT---TSSSCSCSSEEEEEECTT
T ss_pred --------------------------------------------------------CCC---CCCCCCCCeeEEEEECCC
Confidence 000 00001234688888877
Q ss_pred CeeEeeeCCCeEEEEeCCCCceEEe----------eeCCceEEEEEecCCcEEEeecCCCeEEEEeccccchhhhhc---
Q psy18231 389 HEILTASLDCRIRRYDIRTGNLVTD----------YVGEPIVDACFTRDCQCILTCSTDECLRLFDKATGELLEEYK--- 455 (540)
Q Consensus 389 ~~l~~~~~dg~i~iwd~~~~~~~~~----------~~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~--- 455 (540)
..+.+|+.++-|..||..+++...- +....|.++...++|+.|.+|+.++-|.+||..+++......
T Consensus 368 g~lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~ 447 (795)
T 4a2l_A 368 KNLWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVENFNQRNS 447 (795)
T ss_dssp SCEEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEEEECTTTS
T ss_pred CCEEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEEeecCCC
Confidence 7788899888899999887654332 223568999999898856667777779999988765322111
Q ss_pred -cCcCCcceEEEEecCCCCeEEEeeCCCcEEEEEecCCcceeEEEe-----cccceeeeEEEEcCCCcEEEeecCCeeEE
Q psy18231 456 -GHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIH-----SVGKAVVNSLCSHPTRKHIMSACGNNVKL 529 (540)
Q Consensus 456 -~~~~~v~~~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~-----~~~~~~v~~l~~s~d~~~l~s~~d~~i~i 529 (540)
.....|.++ ...++|.+.+. +.+ -+.+||..+++.. .+.. ......|.++...++|.+.+... +.|..
T Consensus 448 ~l~~~~v~~i--~~d~~g~lwig-t~~-Gl~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~-~Gl~~ 521 (795)
T 4a2l_A 448 QLVNENVYAI--LPDGEGNLWLG-TLS-ALVRFNPEQRSFT-TIEKEKDGTPVVSKQITTLFRDSHKRLWIGGE-EGLSV 521 (795)
T ss_dssp CCSCSCEEEE--EECSSSCEEEE-ESS-CEEEEETTTTEEE-ECCBCTTCCBCCCCCEEEEEECTTCCEEEEES-SCEEE
T ss_pred CcCCCeeEEE--EECCCCCEEEE-ecC-ceeEEeCCCCeEE-EccccccccccCCceEEEEEECCCCCEEEEeC-CceEE
Confidence 123345555 66777765444 344 5888997665432 2211 11235789999999998777665 55777
Q ss_pred EEccc
Q psy18231 530 WTAEE 534 (540)
Q Consensus 530 w~~~~ 534 (540)
|+..+
T Consensus 522 ~~~~~ 526 (795)
T 4a2l_A 522 FKQEG 526 (795)
T ss_dssp EEEET
T ss_pred EeCCC
Confidence 77643
|
| >2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* | Back alignment and structure |
|---|
Probab=99.02 E-value=2.5e-08 Score=88.00 Aligned_cols=149 Identities=11% Similarity=-0.025 Sum_probs=106.0
Q ss_pred EEEecCCee-EeeeCCCeEEEEeCCCCceEEeeeCCceEEEEEecCCcEEEeecCCCeEEEEeccccchhhhhccCc--C
Q psy18231 383 SVHVSDHEI-LTASLDCRIRRYDIRTGNLVTDYVGEPIVDACFTRDCQCILTCSTDECLRLFDKATGELLEEYKGHK--S 459 (540)
Q Consensus 383 ~l~~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~--~ 459 (540)
.+++.++.+ ++.-.++.+.++|..+.+.+.++.-..-....+++||+.++++..++.|.++|..+.+.+..+.... .
T Consensus 70 Gi~~~g~~lyv~t~~~~~v~viD~~t~~v~~~i~~g~~~g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~ 149 (266)
T 2iwa_A 70 GLTLLNEKLYQVVWLKNIGFIYDRRTLSNIKNFTHQMKDGWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGH 149 (266)
T ss_dssp EEEEETTEEEEEETTCSEEEEEETTTTEEEEEEECCSSSCCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTE
T ss_pred EEEEeCCEEEEEEecCCEEEEEECCCCcEEEEEECCCCCeEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCc
Confidence 455556444 4445688999999999999888863311234467788888887788999999999988777765322 1
Q ss_pred C---cceEEEEecCCCCeEEEeeCCCcEEEEEecCCcceeEEEeccc-----------ceeeeEEEEcCCCcEEEeec--
Q psy18231 460 G---DFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVG-----------KAVVNSLCSHPTRKHIMSAC-- 523 (540)
Q Consensus 460 ~---v~~~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~-----------~~~v~~l~~s~d~~~l~s~~-- 523 (540)
+ ...+ .|. +|+..+....++.|.+.|..+++.+..+...+. ....+.++|+|+++.|+.++
T Consensus 150 p~~~~nel--e~~-dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~ 226 (266)
T 2iwa_A 150 RVIRLNEL--EYI-NGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKL 226 (266)
T ss_dssp ECCCEEEE--EEE-TTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETT
T ss_pred ccccceeE--EEE-CCEEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCC
Confidence 2 2344 455 675555555688999999999999999974211 13568999999986655544
Q ss_pred CCeeEEEEccc
Q psy18231 524 GNNVKLWTAEE 534 (540)
Q Consensus 524 d~~i~iw~~~~ 534 (540)
.++|..-++.+
T Consensus 227 ~~~v~~i~l~~ 237 (266)
T 2iwa_A 227 WPKLFEIKLHL 237 (266)
T ss_dssp CSEEEEEEEEE
T ss_pred CCeEEEEEEec
Confidence 78888877754
|
| >2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A* | Back alignment and structure |
|---|
Probab=99.01 E-value=4.5e-08 Score=98.12 Aligned_cols=130 Identities=12% Similarity=0.118 Sum_probs=87.4
Q ss_pred eeEeeeCCCeEEEEeCCCCceEEeeeCC---------------ce--------------------------EEEEEecCC
Q psy18231 390 EILTASLDCRIRRYDIRTGNLVTDYVGE---------------PI--------------------------VDACFTRDC 428 (540)
Q Consensus 390 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~---------------~i--------------------------~~~~~sp~~ 428 (540)
.++.++.+|.+.++|.++++.+....-. ++ ..++++|+.
T Consensus 318 ~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~ 397 (571)
T 2ad6_A 318 LLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPES 397 (571)
T ss_dssp EEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTT
T ss_pred EEEEeCCCcEEEEEECCCCCEEeeecccCCccccccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCC
Confidence 4667888999999999999887655321 11 246788877
Q ss_pred cEEEeec-------------------------------------CCCeEEEEeccccchhhhhccCcCCcceEEEEecCC
Q psy18231 429 QCILTCS-------------------------------------TDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSK 471 (540)
Q Consensus 429 ~~l~~~~-------------------------------------~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~s~~ 471 (540)
.++++.. .+|.|..||..+++.+.++..... +... .+...
T Consensus 398 g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~~~~-~~~~--~~~t~ 474 (571)
T 2ad6_A 398 RTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEKFA-AWGG--TLYTK 474 (571)
T ss_dssp TEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTTCCEEEEEEESSC-CCSB--CEEET
T ss_pred CEEEEEchhccccccccccccccCCccccccceeccCccccCCCCCCeEEEEECCCCCEEEEecCCCC-ccce--eEEEC
Confidence 7776643 357899999999988776653322 2222 22234
Q ss_pred CCeEEEeeCCCcEEEEEecCCcceeEEEecccceeeeEEEEcCCCcEEEeec
Q psy18231 472 DSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC 523 (540)
Q Consensus 472 ~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~ 523 (540)
+..++.++.||.|+.||..+++.+.++... ....-.-+.+..+|+.++...
T Consensus 475 gg~v~~g~~dg~l~a~D~~tG~~lw~~~~~-~~~~~~p~~~~~~G~~yv~~~ 525 (571)
T 2ad6_A 475 GGLVWYATLDGYLKALDNKDGKELWNFKMP-SGGIGSPMTYSFKGKQYIGSM 525 (571)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECS-SCCCSCCEEEEETTEEEEEEE
T ss_pred CCEEEEEcCCCeEEEEECCCCCEEEEEeCC-CCcEeeeEEEEECCEEEEEEE
Confidence 567888999999999999999999988742 111112234557777555443
|
| >1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A* | Back alignment and structure |
|---|
Probab=99.00 E-value=6.5e-08 Score=96.82 Aligned_cols=80 Identities=10% Similarity=0.075 Sum_probs=52.2
Q ss_pred CCCeEEEEeccccchhhhhccCcCCcceEEEEecCCCCeEEEeeCCCcEEEEEecCCcceeEEEecccceeeeEEEEcCC
Q psy18231 436 TDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPT 515 (540)
Q Consensus 436 ~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d 515 (540)
.+|.|..||+.+++.+-+..... +...- .....+..++.++.||.++.||.++|+.+-+++.. ......-+.+..+
T Consensus 451 ~~G~l~A~D~~tG~~~W~~~~~~-~~~~g--~~~tagg~vf~gt~dg~l~A~D~~tG~~lW~~~l~-~g~~~~P~~y~~~ 526 (599)
T 1w6s_A 451 GLGQIKAYNAITGDYKWEKMERF-AVWGG--TMATAGDLVFYGTLDGYLKARDSDTGDLLWKFKIP-SGAIGYPMTYTHK 526 (599)
T ss_dssp CCEEEEEECTTTCCEEEEEEESS-CCCSB--CEEETTTEEEEECTTSEEEEEETTTCCEEEEEECS-SCCCSCCEEEEET
T ss_pred CcCeEEEEECCCCCEEeEecCCC-CccCc--ceEecCCEEEEECCCCeEEEEECCCCCEEEEeeCC-CCcEeccEEEEeC
Confidence 34789999999998776654221 11111 12234667888999999999999999999988742 1112223555667
Q ss_pred CcEE
Q psy18231 516 RKHI 519 (540)
Q Consensus 516 ~~~l 519 (540)
|+..
T Consensus 527 G~qy 530 (599)
T 1w6s_A 527 GTQY 530 (599)
T ss_dssp TEEE
T ss_pred CEEE
Confidence 7643
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 | Back alignment and structure |
|---|
Probab=98.97 E-value=5.5e-07 Score=81.14 Aligned_cols=246 Identities=10% Similarity=0.055 Sum_probs=146.4
Q ss_pred CCEEEEeeCCCcEEEEcCCCCee-----EEEeecCCcceeEEEEeeCCCeEE-EeeCCCeEEEEEcCCCceeEeccccCC
Q psy18231 176 GSYCLTCGSDKKIKLWNPYRNLL-----LKTYGGHAHEVNDATAACDSSQIA-SGASDKSVILWEVTTGQPVRRWREHAS 249 (540)
Q Consensus 176 g~~lat~~~dg~i~iwd~~~~~~-----~~~~~~h~~~v~~l~~sp~~~~l~-s~s~dg~i~iwd~~~~~~~~~~~~h~~ 249 (540)
|++|+.+.. +.|+.+++..... ...+......+..++|++++..|. +-..++.|..++...+.....+.....
T Consensus 1 ~~~l~~~~~-~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~ 79 (267)
T 1npe_A 1 GTHLLFAQT-GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLG 79 (267)
T ss_dssp CEEEEEEEE-EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCC
T ss_pred CcEEEEEcC-CeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCC
Confidence 345555543 4788888765432 112222234678999999665555 555578999999876654333333335
Q ss_pred ceeEEEECCCCCEEE-EecCCCcEEEEEecCCCCCCcchhhhhHhhhhcCCceeEEEEeecccccccccCceeeEEEeee
Q psy18231 250 KVTCVKFNEDSSVVI-SGSQDNTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFR 328 (540)
Q Consensus 250 ~v~~~~~~~~~~~l~-s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (540)
....+++++++..|+ +-...+.|.++++........
T Consensus 80 ~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~------------------------------------------- 116 (267)
T 1npe_A 80 SPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVL------------------------------------------- 116 (267)
T ss_dssp CEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEE-------------------------------------------
T ss_pred CccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEE-------------------------------------------
Confidence 678999999655444 445567888888754321000
Q ss_pred ecccccceeeeeeccceeEEEeecccceecccccccccccchhhhhhcccccEEEEEecC--CeeEeeeC---CCeEEEE
Q psy18231 329 CKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEARDSITSVHVSD--HEILTASL---DCRIRRY 403 (540)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~--~~l~~~~~---dg~i~iw 403 (540)
..........+++++ ..+..+.. .+.|..+
T Consensus 117 ---------------------------------------------~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~ 151 (267)
T 1npe_A 117 ---------------------------------------------FDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETS 151 (267)
T ss_dssp ---------------------------------------------ECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEE
T ss_pred ---------------------------------------------EECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEE
Confidence 000012345677776 45544443 3678888
Q ss_pred eCCCCceEEeee---CCceEEEEEecCCcEE-EeecCCCeEEEEeccccchhhhhccCcCCcceEEEEecCCCCeEEEe-
Q psy18231 404 DIRTGNLVTDYV---GEPIVDACFTRDCQCI-LTCSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCG- 478 (540)
Q Consensus 404 d~~~~~~~~~~~---~~~i~~~~~sp~~~~l-~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~s~~~~~l~s~- 478 (540)
+++... ...+. ......++++|+++.| ++-...+.|.++|.........+..... ...+ +.. +..|+.+
T Consensus 152 ~~dg~~-~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~-P~gi--~~d--~~~lyva~ 225 (267)
T 1npe_A 152 HMDGTN-RRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEGLQY-PFAV--TSY--GKNLYYTD 225 (267)
T ss_dssp ETTSCC-CEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEECCCS-EEEE--EEE--TTEEEEEE
T ss_pred ecCCCC-cEEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEEecCCCC-ceEE--EEe--CCEEEEEE
Confidence 876432 22222 2457889999986655 4555578999999876543322222111 2233 443 4455544
Q ss_pred eCCCcEEEEEecCCcceeEEEecccceeeeEEEEcCCCc
Q psy18231 479 SSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRK 517 (540)
Q Consensus 479 s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~ 517 (540)
...+.|.++|..+++.+..+.. +.......+++.|++.
T Consensus 226 ~~~~~v~~~d~~~g~~~~~i~~-g~~~~p~gi~~~~~~~ 263 (267)
T 1npe_A 226 WKTNSVIAMDLAISKEMDTFHP-HKQTRLYGITIALSQC 263 (267)
T ss_dssp TTTTEEEEEETTTTEEEEEECC-SSCCCCCCEEEECSCC
T ss_pred CCCCeEEEEeCCCCCceEEEcc-ccccccceeeecCccC
Confidence 4568999999989998888862 2222467888888764
|
| >1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A | Back alignment and structure |
|---|
Probab=98.95 E-value=2.1e-07 Score=95.49 Aligned_cols=113 Identities=10% Similarity=0.123 Sum_probs=75.5
Q ss_pred EEEeCC-CCCEEEEeeCCC-----------cEEEEcCCCCee--EEEeec-CCcceeEEEEeeCCCeEEEeeC-CCeEEE
Q psy18231 169 HTRFPV-DGSYCLTCGSDK-----------KIKLWNPYRNLL--LKTYGG-HAHEVNDATAACDSSQIASGAS-DKSVIL 232 (540)
Q Consensus 169 ~v~~sp-dg~~lat~~~dg-----------~i~iwd~~~~~~--~~~~~~-h~~~v~~l~~sp~~~~l~s~s~-dg~i~i 232 (540)
++++.| +++.++.|+.+. .+.+||+.+++- +..+.. +.....++++.+++++++.|+. +..+.+
T Consensus 190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~ 269 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSL 269 (656)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEE
T ss_pred eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceEE
Confidence 566777 888888887543 588999887753 233322 3333445778889999999984 468999
Q ss_pred EEcCCCceeEeccccCC-ceeEEEECCCCCEEEEec-CC-----CcEEEEEecCCC
Q psy18231 233 WEVTTGQPVRRWREHAS-KVTCVKFNEDSSVVISGS-QD-----NTVMMWDVKSRS 281 (540)
Q Consensus 233 wd~~~~~~~~~~~~h~~-~v~~~~~~~~~~~l~s~~-~d-----g~i~iwd~~~~~ 281 (540)
||..+++....-..+.. .-.+++..++++.++.|+ .+ ..+.+||..+.+
T Consensus 270 yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~ 325 (656)
T 1k3i_A 270 YDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKT 325 (656)
T ss_dssp EEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTE
T ss_pred ecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCc
Confidence 99988754433221211 123456667899999988 34 468888887654
|
| >2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* | Back alignment and structure |
|---|
Probab=98.95 E-value=1.7e-07 Score=82.68 Aligned_cols=195 Identities=6% Similarity=-0.029 Sum_probs=127.6
Q ss_pred eEEEEeCCCCCEEEEeeC--CCcEEEEcCCCCeeEEEeecCCc-ceeEEEEeeCCCeE-EEeeCCCeEEEEEcCCCceeE
Q psy18231 167 LMHTRFPVDGSYCLTCGS--DKKIKLWNPYRNLLLKTYGGHAH-EVNDATAACDSSQI-ASGASDKSVILWEVTTGQPVR 242 (540)
Q Consensus 167 v~~v~~spdg~~lat~~~--dg~i~iwd~~~~~~~~~~~~h~~-~v~~l~~sp~~~~l-~s~s~dg~i~iwd~~~~~~~~ 242 (540)
...+.|+||+.+.++.+. ++.|+++|+.+++.+.++.-... ....+++. +..| ++.-.++.+.++|..+.+.+.
T Consensus 23 ~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~~~~v~viD~~t~~v~~ 100 (266)
T 2iwa_A 23 TQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NEKLYQVVWLKNIGFIYDRRTLSNIK 100 (266)
T ss_dssp EEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEETTCSEEEEEETTTTEEEE
T ss_pred cccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CCEEEEEEecCCEEEEEECCCCcEEE
Confidence 578999999754444443 68999999999999988753221 22244444 5454 455567899999999999888
Q ss_pred eccccCCceeEEEECCCCCEEEEecCCCcEEEEEecCCCCCCcchhhhhHhhhhcCCceeEEEEeecccccccccCceee
Q psy18231 243 RWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHLSNGLLTK 322 (540)
Q Consensus 243 ~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (540)
++...... ...+++|++.++.+..++.|.++|..+.+.....
T Consensus 101 ~i~~g~~~--g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I------------------------------------ 142 (266)
T 2iwa_A 101 NFTHQMKD--GWGLATDGKILYGSDGTSILYEIDPHTFKLIKKH------------------------------------ 142 (266)
T ss_dssp EEECCSSS--CCEEEECSSSEEEECSSSEEEEECTTTCCEEEEE------------------------------------
T ss_pred EEECCCCC--eEEEEECCCEEEEECCCCeEEEEECCCCcEEEEE------------------------------------
Confidence 87532122 2334557777777767889999998876521000
Q ss_pred EEEeeeecccccceeeeeeccceeEEEeecccceecccccccccccchhhhhhcccccEEEEEecCCeeEee-eCCCeEE
Q psy18231 323 LVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEARDSITSVHVSDHEILTA-SLDCRIR 401 (540)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~~~-~~dg~i~ 401 (540)
.+. .-...-..+..+.+....+.+. ..++.|.
T Consensus 143 -------------------------~Vg----------------------~~~~p~~~~nele~~dg~lyvn~~~~~~V~ 175 (266)
T 2iwa_A 143 -------------------------NVK----------------------YNGHRVIRLNELEYINGEVWANIWQTDCIA 175 (266)
T ss_dssp -------------------------ECE----------------------ETTEECCCEEEEEEETTEEEEEETTSSEEE
T ss_pred -------------------------EEC----------------------CCCcccccceeEEEECCEEEEecCCCCeEE
Confidence 000 0000011234455555444444 4578999
Q ss_pred EEeCCCCceEEeeeC---------------CceEEEEEecCCc-EEEeecCCCeEEEEecccc
Q psy18231 402 RYDIRTGNLVTDYVG---------------EPIVDACFTRDCQ-CILTCSTDECLRLFDKATG 448 (540)
Q Consensus 402 iwd~~~~~~~~~~~~---------------~~i~~~~~sp~~~-~l~~~~~dg~i~i~d~~~~ 448 (540)
+.|..+++.+..+.- ...+.++|+|+++ +++++...+.+...++...
T Consensus 176 vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~~ 238 (266)
T 2iwa_A 176 RISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHLV 238 (266)
T ss_dssp EEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEEC
T ss_pred EEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEecc
Confidence 999999999888753 2458999999876 5556667889999888654
|
| >1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A* | Back alignment and structure |
|---|
Probab=98.92 E-value=2.2e-07 Score=93.01 Aligned_cols=104 Identities=16% Similarity=0.070 Sum_probs=69.6
Q ss_pred CCEEEEeeC-CCcEEEEcC-CCCeeEEEeecCCcc-----------eeEEEEeeCCCe----EEEeeCCCeEEEEEcCCC
Q psy18231 176 GSYCLTCGS-DKKIKLWNP-YRNLLLKTYGGHAHE-----------VNDATAACDSSQ----IASGASDKSVILWEVTTG 238 (540)
Q Consensus 176 g~~lat~~~-dg~i~iwd~-~~~~~~~~~~~h~~~-----------v~~l~~sp~~~~----l~s~s~dg~i~iwd~~~~ 238 (540)
+..|++++. ++.|.-+|. .+|+.+.++...... ...++++|.+.. |+.++.|+.+..+|..+|
T Consensus 62 ~g~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG 141 (599)
T 1w6s_A 62 DGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETG 141 (599)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTC
T ss_pred CCEEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcCCCEEEEEECCCC
Confidence 446666776 889999999 899999887543211 123566554445 888889999999999999
Q ss_pred ceeEeccccC----CceeE-EEECCCCCEEEEec------CCCcEEEEEecCCC
Q psy18231 239 QPVRRWREHA----SKVTC-VKFNEDSSVVISGS------QDNTVMMWDVKSRS 281 (540)
Q Consensus 239 ~~~~~~~~h~----~~v~~-~~~~~~~~~l~s~~------~dg~i~iwd~~~~~ 281 (540)
+.+....... ..+.+ -... ++ .++.++ .+|.|..+|.++++
T Consensus 142 ~~~W~~~~~~~~~~~~~~ssP~v~-~g-~V~vg~~g~e~g~~g~v~A~D~~TG~ 193 (599)
T 1w6s_A 142 ETVWKVENSDIKVGSTLTIAPYVV-KD-KVIIGSSGAELGVRGYLTAYDVKTGE 193 (599)
T ss_dssp CEEEEEECCCGGGTCBCCSCCEEE-TT-EEEECCBCGGGTCCCEEEEEETTTCC
T ss_pred CEEEeecCCCCCccceeecCCEEE-CC-EEEEEecccccCCCCeEEEEECCCCc
Confidence 9887654221 01111 1111 34 455554 37899999999887
|
| >2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A* | Back alignment and structure |
|---|
Probab=98.92 E-value=1.3e-07 Score=94.74 Aligned_cols=102 Identities=12% Similarity=0.103 Sum_probs=67.4
Q ss_pred CCEEEEeeC-CCcEEEEcC-CCCeeEEEeecCCc-ce----------eEEEEeeCCCeEEEeeCCCeEEEEEcCCCceeE
Q psy18231 176 GSYCLTCGS-DKKIKLWNP-YRNLLLKTYGGHAH-EV----------NDATAACDSSQIASGASDKSVILWEVTTGQPVR 242 (540)
Q Consensus 176 g~~lat~~~-dg~i~iwd~-~~~~~~~~~~~h~~-~v----------~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~ 242 (540)
+..+++++. ++.|.-+|. .+|+.+.++..... .+ ..++. ++..++.++.|+.+..+|..+|+.+.
T Consensus 62 ~g~vyv~~~~~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l~alD~~tG~~~W 139 (571)
T 2ad6_A 62 GDMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAY--GAGQIVKKQANGHLLALDAKTGKINW 139 (571)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEE
T ss_pred CCEEEEEeCCCCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEE--ECCEEEEEeCCCEEEEEECCCCCEEE
Confidence 445666666 899999999 89999888753221 00 11233 35678888889999999999999887
Q ss_pred eccccC--C--ceeE-EEECCCCCEEEEecC------CCcEEEEEecCCC
Q psy18231 243 RWREHA--S--KVTC-VKFNEDSSVVISGSQ------DNTVMMWDVKSRS 281 (540)
Q Consensus 243 ~~~~h~--~--~v~~-~~~~~~~~~l~s~~~------dg~i~iwd~~~~~ 281 (540)
...... . .+.+ .... ++ .++.++. +|.|..+|..+++
T Consensus 140 ~~~~~~~~~~~~~~~~P~v~-~g-~v~vg~~~~~~~~~g~v~a~D~~tG~ 187 (571)
T 2ad6_A 140 EVEVCDPKVGSTLTQAPFVA-KD-TVLMGCSGAELGVRGAVNAFDLKTGE 187 (571)
T ss_dssp EEECCCGGGTCBCCSCCEEE-TT-EEEEECBCGGGTCCCEEEEEETTTCC
T ss_pred EecCCCCCccceeccCCEEE-CC-EEEEEecCCccCCCCEEEEEECCCCc
Confidence 654211 0 1111 1111 34 5555554 7899999999887
|
| >1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1 | Back alignment and structure |
|---|
Probab=98.88 E-value=1.5e-07 Score=94.49 Aligned_cols=80 Identities=16% Similarity=0.279 Sum_probs=54.4
Q ss_pred CCeEEEEeccccchhhhhccCcCCcceEEEEecCCCCeEEEeeCCCcEEEEEecCCcceeEEEeccccee-eeEEEEcCC
Q psy18231 437 DECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAV-VNSLCSHPT 515 (540)
Q Consensus 437 dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~-v~~l~~s~d 515 (540)
+|.|..||+.+++.+-+...... .... .....+.+++.|+.||.++.||.++|+.+.+++. ..+. -.-+.|..+
T Consensus 465 ~G~l~A~D~~tG~~~W~~~~~~~-~~~g--~~~tagglvf~g~~dg~l~A~D~~tG~~lW~~~~--~~g~~a~P~~y~~~ 539 (582)
T 1flg_A 465 VGSLRAMDPVSGKVVWEHKEHLP-LWAG--VLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQT--GSGIVSPPITWEQD 539 (582)
T ss_dssp SEEEEEECTTTCCEEEEEEESSC-CCSC--CEEETTTEEEEECTTSEEEEEETTTCCEEEEEEC--SSCCCSCCEEEEET
T ss_pred cceEEEEECCCCCEEEEecCCCC-Cccc--ceEeCCCEEEEECCCCcEEEEECCCCCEEEEecC--CCCcccCceEEEEC
Confidence 68899999999988766654322 2221 1222466888899999999999999999999884 2221 123566678
Q ss_pred CcEEEe
Q psy18231 516 RKHIMS 521 (540)
Q Consensus 516 ~~~l~s 521 (540)
|+..++
T Consensus 540 G~qYv~ 545 (582)
T 1flg_A 540 GEQYLG 545 (582)
T ss_dssp TEEEEE
T ss_pred CEEEEE
Confidence 864443
|
| >3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A | Back alignment and structure |
|---|
Probab=98.87 E-value=1.7e-07 Score=81.60 Aligned_cols=136 Identities=10% Similarity=-0.029 Sum_probs=97.2
Q ss_pred EEecCCee-EeeeCCCeEEEEeCCCCceEEeeeCCceEEEEEecCCcEEEeecCCCeEEEEeccccchhhhhccCc--CC
Q psy18231 384 VHVSDHEI-LTASLDCRIRRYDIRTGNLVTDYVGEPIVDACFTRDCQCILTCSTDECLRLFDKATGELLEEYKGHK--SG 460 (540)
Q Consensus 384 l~~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~--~~ 460 (540)
+++..+.+ ++.-.++.+.+||.++.+.+.++.-.. ....+++|++.|+.+..++.|.++|..+.+.+.++.... .+
T Consensus 92 it~~g~~ly~ltw~~~~v~v~D~~t~~~~~ti~~~~-eG~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~ 170 (262)
T 3nol_A 92 ISDWKDKIVGLTWKNGLGFVWNIRNLRQVRSFNYDG-EGWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEE 170 (262)
T ss_dssp EEEETTEEEEEESSSSEEEEEETTTCCEEEEEECSS-CCCCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEE
T ss_pred EEEeCCEEEEEEeeCCEEEEEECccCcEEEEEECCC-CceEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCcc
Confidence 44445333 444468899999999999998887432 334455678888877778899999999998877765432 22
Q ss_pred c---ceEEEEecCCCCeEEEeeCCCcEEEEEecCCcceeEEEeccc----------ceeeeEEEEcCCCcEEEeec
Q psy18231 461 D---FRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVG----------KAVVNSLCSHPTRKHIMSAC 523 (540)
Q Consensus 461 v---~~~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~----------~~~v~~l~~s~d~~~l~s~~ 523 (540)
+ ..+ .+. +|+..+..-.++.|.+.|..+++.+..+...+- ....+.++|+|+++.|..++
T Consensus 171 ~~~lNEL--e~~-~G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTG 243 (262)
T 3nol_A 171 LPELNEL--EWV-DGEIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTG 243 (262)
T ss_dssp CCCEEEE--EEE-TTEEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEE
T ss_pred cccccee--EEE-CCEEEEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEEC
Confidence 2 234 444 676565555788999999999999999874211 23568999999987777766
|
| >4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A* | Back alignment and structure |
|---|
Probab=98.87 E-value=3.3e-06 Score=88.95 Aligned_cols=278 Identities=8% Similarity=0.073 Sum_probs=175.0
Q ss_pred eEEEEeCCCCCEEEEeeCCCcEEEEcCCCCeeEEEe-ecCCcceeEEEEeeCCCeEEEeeCCCeEEEEEcCCCceeEecc
Q psy18231 167 LMHTRFPVDGSYCLTCGSDKKIKLWNPYRNLLLKTY-GGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPVRRWR 245 (540)
Q Consensus 167 v~~v~~spdg~~lat~~~dg~i~iwd~~~~~~~~~~-~~h~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~ 245 (540)
|.++...++|++.+ ++.++-+..|+..+++..... ..+...|.++...+++.+.+ ++.++-+.+||..+++......
T Consensus 175 i~~i~~d~~g~lwi-gt~~~Gl~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lwi-gt~~~Gl~~~~~~~~~~~~~~~ 252 (795)
T 4a2l_A 175 IASTLYRQGDQIYI-GTSTDGLYTYSITQKTFEKVIPILGTKQIQAILQQSPTRIWV-ATEGAGLFLINPKTKEIKNYLH 252 (795)
T ss_dssp CEEEEEEETTEEEE-EESSSCEEEEETTTCCEEECC----CCCEEEEEEEETTEEEE-EEBSSCEEEEETTTTEEEEECC
T ss_pred eEEEEECCCCCEEE-EECCCCEEEEeCCCCeEEEecCCCCCCeeEEEEEcCCCCEEE-EECCCCeEEEeCCCCeEEEeec
Confidence 88898888886554 555556888998776543321 12356788888888876555 4444448889987765443322
Q ss_pred c-------cCCceeEEEECCCCCEEEEecCCCcEEEEEecCCCCCCcchhhhhHhhhhcCCceeEEEEeecccccccccC
Q psy18231 246 E-------HASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHLSNG 318 (540)
Q Consensus 246 ~-------h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (540)
. ....|.++...++|.+. .|+.+ -|.+||..+....... .
T Consensus 253 ~~~~~~~l~~~~i~~i~~d~~g~lW-igt~~-Gl~~~~~~~~~~~~~~----------------------~--------- 299 (795)
T 4a2l_A 253 SPSNPKSISSNYIRSLAMDSQNRLW-IGTFN-DLNIYHEGTDSFASYS----------------------S--------- 299 (795)
T ss_dssp CTTCTTSCSCSBEEEEEECTTSCEE-EEESS-CEEEEETTTTEEEEEC----------------------C---------
T ss_pred CCCCccccCCCeEEEEEEcCCCCEE-EEeCC-hhheEcCCCCeEEEEe----------------------c---------
Confidence 1 24569999998888744 45555 4888887654310000 0
Q ss_pred ceeeEEEeeeecccccceeeeeeccceeEEEeecccceecccccccccccchhhhhhcccccEEEEEecC-CeeEeeeCC
Q psy18231 319 LLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEARDSITSVHVSD-HEILTASLD 397 (540)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~-~~l~~~~~d 397 (540)
. ......-....|.++..++ ..+.+|+.+
T Consensus 300 ------------------------------------------------~--~~~~~~l~~~~i~~i~~D~~g~lWigt~~ 329 (795)
T 4a2l_A 300 ------------------------------------------------N--PVENGSLSQRSVRSIFMDSQGGMWLGTYF 329 (795)
T ss_dssp ------------------------------------------------C--TTSTTSCSSSCEEEEEECTTSCEEEEESS
T ss_pred ------------------------------------------------C--CCCCCCCCCCcEEEEEEeCCcCEEEEECC
Confidence 0 0000011235688888887 788889988
Q ss_pred CeEEEEeCCCCceEEe--------eeCCceEEEEEecCCcEEEeecCCCeEEEEeccccchhhhhcc--------CcCCc
Q psy18231 398 CRIRRYDIRTGNLVTD--------YVGEPIVDACFTRDCQCILTCSTDECLRLFDKATGELLEEYKG--------HKSGD 461 (540)
Q Consensus 398 g~i~iwd~~~~~~~~~--------~~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~--------~~~~v 461 (540)
+-|..|+..++....- +....|.++...++|++. +|+.++-|..||..+++....... ....|
T Consensus 330 ~Gl~~~~~~~~~~~~~~~~~~~~~l~~~~V~~i~~d~~g~lW-iGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v 408 (795)
T 4a2l_A 330 GGLNYYHPIRNRFKNIRNIPYKNSLSDNVVSCIVEDKDKNLW-IGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNI 408 (795)
T ss_dssp SCEEEECGGGGSSEEECCCTTSSSCSCSSEEEEEECTTSCEE-EEESSSCEEEECTTTCCEEEECCC------CCSCSCE
T ss_pred CCeEEeCCCcccceEEcCCCCCCCCCCCeeEEEEECCCCCEE-EEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccE
Confidence 8899998765543221 123469999998888754 567777799999876643221111 12345
Q ss_pred ceEEEEecCCCCeEEEeeCCCcEEEEEecCCcceeEEEe---cccceeeeEEEEcCCCcEEEeecCCeeEEEEccc
Q psy18231 462 FRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIH---SVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEE 534 (540)
Q Consensus 462 ~~~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~---~~~~~~v~~l~~s~d~~~l~s~~d~~i~iw~~~~ 534 (540)
.++ +..++|+.|..|+.++-|..||..+++. ..+.. ......|.++...++|.+.+... +.|.+|+.++
T Consensus 409 ~~i--~~d~~g~~lWigt~~~Gl~~~d~~~~~~-~~~~~~~~~l~~~~v~~i~~d~~g~lwigt~-~Gl~~~~~~~ 480 (795)
T 4a2l_A 409 KAV--YVDEKKSLVYIGTHAGGLSILHRNSGQV-ENFNQRNSQLVNENVYAILPDGEGNLWLGTL-SALVRFNPEQ 480 (795)
T ss_dssp EEE--EEETTTTEEEEEETTTEEEEEETTTCCE-EEECTTTSCCSCSCEEEEEECSSSCEEEEES-SCEEEEETTT
T ss_pred EEE--EEcCCCCEEEEEeCcCceeEEeCCCCcE-EEeecCCCCcCCCeeEEEEECCCCCEEEEec-CceeEEeCCC
Confidence 555 6667777577778777899999777653 33321 01345799999999888776665 4577787654
|
| >1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A | Back alignment and structure |
|---|
Probab=98.81 E-value=5.1e-07 Score=88.02 Aligned_cols=90 Identities=6% Similarity=0.010 Sum_probs=61.8
Q ss_pred CeEEEEeccc--cch-hhhhccCcCCcceEEEEecCCCCeEEEe-eCCCcEEEEEecCCc------------ceeEEEec
Q psy18231 438 ECLRLFDKAT--GEL-LEEYKGHKSGDFRIECCLDSKDSQIFCG-SSDGKIYKWQLVDSS------------QISTLIHS 501 (540)
Q Consensus 438 g~i~i~d~~~--~~~-~~~~~~~~~~v~~~~~~~s~~~~~l~s~-s~dg~i~iwd~~~~~------------~~~~~~~~ 501 (540)
+.|.+.|.++ ++. +..+.....+ ..+ .++|||++++++ ..+.+|.++|+.+.+ ......
T Consensus 254 ~~V~VID~~~~~~~~~~~~Ipvg~~P-hGv--~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~-- 328 (595)
T 1fwx_A 254 NGVKVVDGRKEASSLFTRYIPIANNP-HGC--NMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPE-- 328 (595)
T ss_dssp TTEEEEECSGGGCCSSEEEEEEESSC-CCE--EECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCB--
T ss_pred CcEEEEeCcccCCceeEEEEecCCCc-eEE--EEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcC--
Confidence 3488888887 444 3444333222 334 799999986554 578899999998653 222222
Q ss_pred ccceeeeEEEEcCCCcEEEeec--CCeeEEEEccc
Q psy18231 502 VGKAVVNSLCSHPTRKHIMSAC--GNNVKLWTAEE 534 (540)
Q Consensus 502 ~~~~~v~~l~~s~d~~~l~s~~--d~~i~iw~~~~ 534 (540)
-......++|+|+| ++.+.. |++|..|+++.
T Consensus 329 -vG~gP~h~aF~~dG-~aY~t~~ldsqV~kwdi~~ 361 (595)
T 1fwx_A 329 -LGLGPLHTAFDGRG-NAYTSLFLDSQVVKWNIED 361 (595)
T ss_dssp -CCSCEEEEEECTTS-EEEEEETTTTEEEEEEHHH
T ss_pred -CCCCcceEEECCCC-eEEEEEecCCcEEEEEhhH
Confidence 33458899999999 555554 99999999976
|
| >1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1 | Back alignment and structure |
|---|
Probab=98.79 E-value=2.2e-06 Score=85.91 Aligned_cols=103 Identities=17% Similarity=0.162 Sum_probs=65.3
Q ss_pred CEEEEeeCCCcEEEEcCCCCeeEEEeecCCcce---------eEEEEeeCCCeEEEeeCCCeEEEEEcCCCceeEecccc
Q psy18231 177 SYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEV---------NDATAACDSSQIASGASDKSVILWEVTTGQPVRRWREH 247 (540)
Q Consensus 177 ~~lat~~~dg~i~iwd~~~~~~~~~~~~h~~~v---------~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h 247 (540)
..|++++.++.|.-+|..+|+.+.++....... ..++. .+..++.++.|+.|..+|..+|+.+...+..
T Consensus 69 g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a~--~~~~v~~~t~dg~l~AlD~~TG~~~W~~~~~ 146 (582)
T 1flg_A 69 GVIYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAI--YGDKVFFGTLDASVVALNKNTGKVVWKKKFA 146 (582)
T ss_dssp TEEEEEETTTEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEE--ETTEEEEEETTTEEEEEESSSCCEEEEEECS
T ss_pred CEEEEEcCCCCEEEEECCCCcEEEEEcCCCCcccccccccCCCccEE--ECCEEEEEeCCCEEEEEECCCCCEEeeecCC
Confidence 345555554459999999999998876432210 12233 3567888889999999999999988765432
Q ss_pred CC----cee-E-EEECC--CCC-EEEEec------CCCcEEEEEecCCC
Q psy18231 248 AS----KVT-C-VKFNE--DSS-VVISGS------QDNTVMMWDVKSRS 281 (540)
Q Consensus 248 ~~----~v~-~-~~~~~--~~~-~l~s~~------~dg~i~iwd~~~~~ 281 (540)
.. .+. . +.... +++ .+++++ .+|.|..+|..+++
T Consensus 147 ~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~ 195 (582)
T 1flg_A 147 DHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGE 195 (582)
T ss_dssp CGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCC
T ss_pred CCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCC
Confidence 21 111 0 11111 222 566654 37889999998887
|
| >3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A | Back alignment and structure |
|---|
Probab=98.78 E-value=7.1e-07 Score=77.69 Aligned_cols=116 Identities=9% Similarity=0.031 Sum_probs=80.8
Q ss_pred eeeecC--eEEEEeCCCCCEEEEeeCCC--cEEEEcCCCCeeEEEeecCCcceeEEEEeeCCCeEEEe-eCCCeEEEEEc
Q psy18231 161 LFVLSG--LMHTRFPVDGSYCLTCGSDK--KIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASG-ASDKSVILWEV 235 (540)
Q Consensus 161 ~~h~~~--v~~v~~spdg~~lat~~~dg--~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~-s~dg~i~iwd~ 235 (540)
..|... ...+.|+ ++.+..+.+.+| .|+++|+++++.+.++.-. .........+++..|... -.++.+.++|.
T Consensus 37 ~phd~~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~-~~~FgeGit~~g~~ly~ltw~~~~v~v~D~ 114 (262)
T 3nol_A 37 YPHDTKAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELG-KRYFGEGISDWKDKIVGLTWKNGLGFVWNI 114 (262)
T ss_dssp EECCTTCEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECC-TTCCEEEEEEETTEEEEEESSSSEEEEEET
T ss_pred ecCCCCcccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecC-CccceeEEEEeCCEEEEEEeeCCEEEEEEC
Confidence 345444 3778888 676666666665 9999999999999988643 344443344445555544 45889999999
Q ss_pred CCCceeEeccccCCceeEEEECCCCCEEEEecCCCcEEEEEecCCC
Q psy18231 236 TTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRS 281 (540)
Q Consensus 236 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~ 281 (540)
.+.+.+.++..... =..++ ++++.|+.+..++.|.++|..+.+
T Consensus 115 ~t~~~~~ti~~~~e-G~glt--~dg~~L~~SdGs~~i~~iDp~T~~ 157 (262)
T 3nol_A 115 RNLRQVRSFNYDGE-GWGLT--HNDQYLIMSDGTPVLRFLDPESLT 157 (262)
T ss_dssp TTCCEEEEEECSSC-CCCEE--ECSSCEEECCSSSEEEEECTTTCS
T ss_pred ccCcEEEEEECCCC-ceEEe--cCCCEEEEECCCCeEEEEcCCCCe
Confidence 99999988864322 23344 467777776667889999988766
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 | Back alignment and structure |
|---|
Probab=98.78 E-value=5.6e-06 Score=74.43 Aligned_cols=218 Identities=6% Similarity=-0.058 Sum_probs=133.1
Q ss_pred cCeEEEEeCCCCCEEEEe-eCCCcEEEEcCCCCeeEEEeecCCcceeEEEEeeCCCeE-EEeeCCCeEEEEEcCCCceeE
Q psy18231 165 SGLMHTRFPVDGSYCLTC-GSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQI-ASGASDKSVILWEVTTGQPVR 242 (540)
Q Consensus 165 ~~v~~v~~spdg~~lat~-~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l-~s~s~dg~i~iwd~~~~~~~~ 242 (540)
..+..++|+++++.|+.+ ..++.|..++.........+.........+++.|++..| ++-...+.|.++++.......
T Consensus 36 ~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~ 115 (267)
T 1npe_A 36 KVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRV 115 (267)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE
T ss_pred CcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEE
Confidence 457899999976666644 457899999987655433333333567899999975555 455557899999986443222
Q ss_pred eccccCCceeEEEECCCCCEEEEecC---CCcEEEEEecCCCCCCcchhhhhHhhhhcCCceeEEEEeecccccccccCc
Q psy18231 243 RWREHASKVTCVKFNEDSSVVISGSQ---DNTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHLSNGL 319 (540)
Q Consensus 243 ~~~~h~~~v~~~~~~~~~~~l~s~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (540)
...........++++|++..|+.+.. .+.|..+++.......+
T Consensus 116 ~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~~~~---------------------------------- 161 (267)
T 1npe_A 116 LFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRIL---------------------------------- 161 (267)
T ss_dssp EECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEE----------------------------------
T ss_pred EEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCcEEE----------------------------------
Confidence 22222246789999996665555443 35677777643221000
Q ss_pred eeeEEEeeeecccccceeeeeeccceeEEEeecccceecccccccccccchhhhhhcccccEEEEEecC--Cee-EeeeC
Q psy18231 320 LTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEARDSITSVHVSD--HEI-LTASL 396 (540)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~--~~l-~~~~~ 396 (540)
....-.....+++++ +.| ++-..
T Consensus 162 ------------------------------------------------------~~~~~~~P~gia~d~~~~~lyv~d~~ 187 (267)
T 1npe_A 162 ------------------------------------------------------AQDNLGLPNGLTFDAFSSQLCWVDAG 187 (267)
T ss_dssp ------------------------------------------------------ECTTCSCEEEEEEETTTTEEEEEETT
T ss_pred ------------------------------------------------------EECCCCCCcEEEEcCCCCEEEEEECC
Confidence 000112356777776 444 44456
Q ss_pred CCeEEEEeCCCCceEEeeeC-CceEEEEEecCCcEEEeecCCCeEEEEeccccchhhhhccCcC-CcceEEEEecCCCC
Q psy18231 397 DCRIRRYDIRTGNLVTDYVG-EPIVDACFTRDCQCILTCSTDECLRLFDKATGELLEEYKGHKS-GDFRIECCLDSKDS 473 (540)
Q Consensus 397 dg~i~iwd~~~~~~~~~~~~-~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~-~v~~~~~~~s~~~~ 473 (540)
.+.|..+|.........+.. .....++.. ++.++++...++.|..+|..+++.+.++..... ....+ ++.|++.
T Consensus 188 ~~~I~~~~~~g~~~~~~~~~~~~P~gi~~d-~~~lyva~~~~~~v~~~d~~~g~~~~~i~~g~~~~p~gi--~~~~~~~ 263 (267)
T 1npe_A 188 THRAECLNPAQPGRRKVLEGLQYPFAVTSY-GKNLYYTDWKTNSVIAMDLAISKEMDTFHPHKQTRLYGI--TIALSQC 263 (267)
T ss_dssp TTEEEEEETTEEEEEEEEECCCSEEEEEEE-TTEEEEEETTTTEEEEEETTTTEEEEEECCSSCCCCCCE--EEECSCC
T ss_pred CCEEEEEecCCCceEEEecCCCCceEEEEe-CCEEEEEECCCCeEEEEeCCCCCceEEEcccccccccee--eecCccC
Confidence 68999999986544333333 334566654 455555555678999999998988777754331 24455 5666653
|
| >3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.76 E-value=4.7e-05 Score=79.93 Aligned_cols=331 Identities=9% Similarity=0.078 Sum_probs=176.0
Q ss_pred cCeEEEEeCCCCCEEEEeeCCCcEEEEcCCCCeeEEEee-------cCCcceeEEEEeeCCCeEEEeeCCCeEEEEEcCC
Q psy18231 165 SGLMHTRFPVDGSYCLTCGSDKKIKLWNPYRNLLLKTYG-------GHAHEVNDATAACDSSQIASGASDKSVILWEVTT 237 (540)
Q Consensus 165 ~~v~~v~~spdg~~lat~~~dg~i~iwd~~~~~~~~~~~-------~h~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~ 237 (540)
..|.++...++|.+.+ |+.++-+..||..+++...... -....|.++...+++.+.+. +.+ -+.+||..+
T Consensus 163 ~~i~~i~~d~~g~lwi-gt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lwig-t~~-Gl~~~d~~~ 239 (781)
T 3v9f_A 163 EQTWTATEAEDGKLYI-GHVEGGLSILSLNDKSVKHFVHDPQNPNSLPGNDVRCIYKDTNGNIWIG-TSK-GLALFNANT 239 (781)
T ss_dssp CCEEEEEEEETTEEEE-EETTTEEEEEETTTTEEEEECC--------CCSSEEEEEECTTCCEEEE-ETT-EEEEEETTT
T ss_pred cceEEEEECCCCCEEE-EecCCCeEEEcCCCCceEeeecCCCCcccCCCCceeEEEEcCCCCEEEE-eCC-cHheECCCC
Confidence 4578888877876544 5556568889987765433211 01356888888877775554 444 588899876
Q ss_pred CceeEecc-------ccCCceeEEEECCCCCEEEEecCCCcEEEEEecCCCCCCcchhhhhHhhhhcCCceeEEEEeecc
Q psy18231 238 GQPVRRWR-------EHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKS 310 (540)
Q Consensus 238 ~~~~~~~~-------~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (540)
++...... .....|.++...++|. |..|+..+-|.++|..+........... ..+...
T Consensus 240 ~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~f--------------~~~~~~ 304 (781)
T 3v9f_A 240 ETFTNFHNNPGNIHGALSSYIFSIKQLKDNK-LWIATELNGIMILDLQQNQFLLPEQIRF--------------EFIREG 304 (781)
T ss_dssp TEEEC-----------CCCCEEEEEECTTSE-EEEEESSSCEEEEETTCC---------C--------------EEECBC
T ss_pred CcEEEEEcCCCccccccCceEEEEEECCCCC-EEEEeCCCCeEEECCCCCeeeeeecccc--------------ccccCC
Confidence 65432211 1245699999888776 5556664568888887654211110000 000000
Q ss_pred c-ccccccCceeeEEEeeeecccccceeeeeeccceeEEEeecccceecccccccccccchhh-----hhhcccccEEEE
Q psy18231 311 T-KNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQ-----ALKEARDSITSV 384 (540)
Q Consensus 311 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~v~~l 384 (540)
. ...+. ...+..+....++.+-+....+.....+........-... ........|.++
T Consensus 305 ~~~~~l~----------------~~~v~~i~~D~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i 368 (781)
T 3v9f_A 305 DNNYSLS----------------NASARYIFQDSFNNIWIGTWGGGINFISNAPPTFHTWSYSPTQMNESSLSNKVVSSV 368 (781)
T ss_dssp SSTTSBS----------------SSCEEEEEECSSCCEEEEEBSSCEEEECSSCCSCEEEC----CCCSSCCSSSCEEEE
T ss_pred CCCCCCC----------------CCeEEEEEEeCCCCEEEEecCCeEEEeCCCCCcceeeccCccccccCCCCCcceEEE
Confidence 0 00000 0011111111122222222111111111100000000000 001123568899
Q ss_pred EecC-CeeEeeeCCCeEEEEeCCCCceEE-----eeeCCceEEEEEecCCcEEEeecCCCeEEEEeccccchhhhhc--c
Q psy18231 385 HVSD-HEILTASLDCRIRRYDIRTGNLVT-----DYVGEPIVDACFTRDCQCILTCSTDECLRLFDKATGELLEEYK--G 456 (540)
Q Consensus 385 ~~~~-~~l~~~~~dg~i~iwd~~~~~~~~-----~~~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~--~ 456 (540)
...+ ..+.+|+.++-|..||..+++... .+....|.++...++|++.+ |+.++-+..+|..+++...... .
T Consensus 369 ~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lWi-gt~~~Gl~~~~~~~~~~~~~~~~~~ 447 (781)
T 3v9f_A 369 CDDGQGKLWIGTDGGGINVFENGKRVAIYNKENRELLSNSVLCSLKDSEGNLWF-GTYLGNISYYNTRLKKFQIIELEKN 447 (781)
T ss_dssp EECTTSCEEEEEBSSCEEEEETTEEEEECC-----CCCSBEEEEEECTTSCEEE-EETTEEEEEECSSSCEEEECCSTTT
T ss_pred EEcCCCCEEEEeCCCcEEEEECCCCeEEEccCCCCCCCcceEEEEECCCCCEEE-EeccCCEEEEcCCCCcEEEeccCCC
Confidence 8887 788888877779999987654332 12235789998888877555 6666779999987665322111 1
Q ss_pred CcCCcceEEEEecCCCCeEEEeeCCCcEEEEEecCCcceeEEEec---ccceeeeEEEEcCCCcEEEeecCCeeEEEEcc
Q psy18231 457 HKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHS---VGKAVVNSLCSHPTRKHIMSACGNNVKLWTAE 533 (540)
Q Consensus 457 ~~~~v~~~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~---~~~~~v~~l~~s~d~~~l~s~~d~~i~iw~~~ 533 (540)
....|.++ ...++|.+ ..|+. +-|..||..+++........ .....|.++...++|.+.+...++.|..|+.+
T Consensus 448 ~~~~v~~i--~~d~~g~l-wigt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~~~Gl~~~~~~ 523 (781)
T 3v9f_A 448 ELLDVRVF--YEDKNKKI-WIGTH-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWIGTFGGGVGIYTPD 523 (781)
T ss_dssp CCCCEEEE--EECTTSEE-EEEET-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEEEESSSCEEEECTT
T ss_pred CCCeEEEE--EECCCCCE-EEEEC-CceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEEEEcCCCEEEEeCC
Confidence 23345554 56666654 44455 56889997766544332210 11357999999999987776654446667654
Q ss_pred c
Q psy18231 534 E 534 (540)
Q Consensus 534 ~ 534 (540)
+
T Consensus 524 ~ 524 (781)
T 3v9f_A 524 M 524 (781)
T ss_dssp C
T ss_pred C
Confidence 3
|
| >2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* | Back alignment and structure |
|---|
Probab=98.73 E-value=3.9e-06 Score=77.85 Aligned_cols=135 Identities=10% Similarity=-0.027 Sum_probs=83.3
Q ss_pred CCeEEEEeCCCCceEEeeeC-CceEEEEEecCCcEEEee-cCCCeEEEEeccccch--hhhhccCcCCcceEEEEecCCC
Q psy18231 397 DCRIRRYDIRTGNLVTDYVG-EPIVDACFTRDCQCILTC-STDECLRLFDKATGEL--LEEYKGHKSGDFRIECCLDSKD 472 (540)
Q Consensus 397 dg~i~iwd~~~~~~~~~~~~-~~i~~~~~sp~~~~l~~~-~~dg~i~i~d~~~~~~--~~~~~~~~~~v~~~~~~~s~~~ 472 (540)
++.|..||..+++....... .....++++|+++.|+++ +.++.|.+|++..... ...+....+ ...+ ++.++|
T Consensus 164 ~g~v~~~d~~~~~~~~~~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi--~~d~~G 240 (322)
T 2fp8_A 164 TGRLIKYDPSTKETTLLLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNI--KRNADG 240 (322)
T ss_dssp CEEEEEEETTTTEEEEEEEEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-EEEE--EECTTS
T ss_pred CceEEEEeCCCCEEEEeccCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC-CCCe--EECCCC
Confidence 46788888876654332222 445679999999866555 5678999999874321 111111112 2334 788999
Q ss_pred CeEEEeeC----------CCcEEEEEecCCcceeEEEeccc--ceeeeEEEEcCCCcEEEeec-CCeeEEEEccccc
Q psy18231 473 SQIFCGSS----------DGKIYKWQLVDSSQISTLIHSVG--KAVVNSLCSHPTRKHIMSAC-GNNVKLWTAEEDY 536 (540)
Q Consensus 473 ~~l~s~s~----------dg~i~iwd~~~~~~~~~~~~~~~--~~~v~~l~~s~d~~~l~s~~-d~~i~iw~~~~~~ 536 (540)
++.++... .+.|..+|. +++.+..+..+.. ...++.+++ .++++.++.. .+.|..++++..+
T Consensus 241 ~l~va~~~~~~~~~~~~~~~~v~~~d~-~G~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~~~~~i~~~~~~~~~ 315 (322)
T 2fp8_A 241 HFWVSSSEELDGNMHGRVDPKGIKFDE-FGNILEVIPLPPPFAGEHFEQIQE-HDGLLYIGTLFHGSVGILVYDKKG 315 (322)
T ss_dssp CEEEEEEEETTSSTTSCEEEEEEEECT-TSCEEEEEECCTTTTTSCCCEEEE-ETTEEEEECSSCSEEEEEEC----
T ss_pred CEEEEecCcccccccCCCccEEEEECC-CCCEEEEEECCCCCccccceEEEE-eCCEEEEeecCCCceEEEeccccc
Confidence 87666544 467888884 5777777763211 245777777 4666666666 8899999987544
|
| >3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.73 E-value=6.9e-05 Score=78.69 Aligned_cols=325 Identities=9% Similarity=0.026 Sum_probs=174.6
Q ss_pred cCeEEEEeCCCCCEEEEeeCCCcEEEEcCCCCeeEEEee-------cCCcceeEEEEeeCCCeEEEeeCCCeEEEEEcCC
Q psy18231 165 SGLMHTRFPVDGSYCLTCGSDKKIKLWNPYRNLLLKTYG-------GHAHEVNDATAACDSSQIASGASDKSVILWEVTT 237 (540)
Q Consensus 165 ~~v~~v~~spdg~~lat~~~dg~i~iwd~~~~~~~~~~~-------~h~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~ 237 (540)
..|.++...++|.+.+ |+.+ -+.+||..+++...... .....|.++...++|. |..|+..+-|.++|..+
T Consensus 211 ~~i~~i~~d~~g~lwi-gt~~-Gl~~~d~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~-lWigt~~~Gl~~~~~~~ 287 (781)
T 3v9f_A 211 NDVRCIYKDTNGNIWI-GTSK-GLALFNANTETFTNFHNNPGNIHGALSSYIFSIKQLKDNK-LWIATELNGIMILDLQQ 287 (781)
T ss_dssp SSEEEEEECTTCCEEE-EETT-EEEEEETTTTEEEC-----------CCCCEEEEEECTTSE-EEEEESSSCEEEEETTC
T ss_pred CceeEEEEcCCCCEEE-EeCC-cHheECCCCCcEEEEEcCCCccccccCceEEEEEECCCCC-EEEEeCCCCeEEECCCC
Confidence 4689999988887655 4444 68899987765432211 1245688888887776 55566545688889876
Q ss_pred CceeEecc--------------ccCCceeEEEECCCCCEEEEecCCCcEEEEEecCCCCCCcchhhhhHhhhhcCCceeE
Q psy18231 238 GQPVRRWR--------------EHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQVRCLNEALKEARDSITS 303 (540)
Q Consensus 238 ~~~~~~~~--------------~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (540)
++...... -....|.++...++|. |..|+.++-|..++.............. .
T Consensus 288 ~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~----~-------- 354 (781)
T 3v9f_A 288 NQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNN-IWIGTWGGGINFISNAPPTFHTWSYSPT----Q-------- 354 (781)
T ss_dssp C---------CEEECBCSSTTSBSSSCEEEEEECSSCC-EEEEEBSSCEEEECSSCCSCEEEC--------C--------
T ss_pred CeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCCC-EEEEecCCeEEEeCCCCCcceeeccCcc----c--------
Confidence 65322111 1346799999988876 6667766778888876543211100000 0
Q ss_pred EEEeecccccccccCceeeEEEeeeecccccceeeeeeccceeEEEeecccceecccccccccccchhhhhhcccccEEE
Q psy18231 304 VHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEARDSITS 383 (540)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 383 (540)
.....+. ...+..+....++.+.+....+.....+........ ...........|.+
T Consensus 355 ------~~~~~l~----------------~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~-~~~~~~~~~~~v~~ 411 (781)
T 3v9f_A 355 ------MNESSLS----------------NKVVSSVCDDGQGKLWIGTDGGGINVFENGKRVAIY-NKENRELLSNSVLC 411 (781)
T ss_dssp ------CCSSCCS----------------SSCEEEEEECTTSCEEEEEBSSCEEEEETTEEEEEC-C-----CCCSBEEE
T ss_pred ------cccCCCC----------------CcceEEEEEcCCCCEEEEeCCCcEEEEECCCCeEEE-ccCCCCCCCcceEE
Confidence 0000000 001111111111112111111111111000000000 00000123467889
Q ss_pred EEecC-CeeEeeeCCCeEEEEeCCCCceEEee----eCCceEEEEEecCCcEEEeecCCCeEEEEeccccchhhhhccC-
Q psy18231 384 VHVSD-HEILTASLDCRIRRYDIRTGNLVTDY----VGEPIVDACFTRDCQCILTCSTDECLRLFDKATGELLEEYKGH- 457 (540)
Q Consensus 384 l~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~----~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~- 457 (540)
+...+ ..|.+|+.++-|..+|..+++..... ....|.++...++|++.+. +. +-|..||..+++........
T Consensus 412 i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lwig-t~-~Gl~~~~~~~~~~~~~~~~~~ 489 (781)
T 3v9f_A 412 SLKDSEGNLWFGTYLGNISYYNTRLKKFQIIELEKNELLDVRVFYEDKNKKIWIG-TH-AGVFVIDLASKKVIHHYDTSN 489 (781)
T ss_dssp EEECTTSCEEEEETTEEEEEECSSSCEEEECCSTTTCCCCEEEEEECTTSEEEEE-ET-TEEEEEESSSSSCCEEECTTT
T ss_pred EEECCCCCEEEEeccCCEEEEcCCCCcEEEeccCCCCCCeEEEEEECCCCCEEEE-EC-CceEEEeCCCCeEEecccCcc
Confidence 98876 77888888788999998877654322 2357899998888876554 44 55889998776543221111
Q ss_pred ----cCCcceEEEEecCCCCeEEEeeCCCcEEEEEecCCcceeEEEe--cccceeeeEEEEcCCCcEEEeecCCeeEEEE
Q psy18231 458 ----KSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIH--SVGKAVVNSLCSHPTRKHIMSACGNNVKLWT 531 (540)
Q Consensus 458 ----~~~v~~~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~--~~~~~~v~~l~~s~d~~~l~s~~d~~i~iw~ 531 (540)
...+.++ ...++|.+.+ |+.++-|..||..+++ ...+.. ......|.++...++|.+.++..+|-|..|+
T Consensus 490 ~~~~~~~i~~i--~~d~~g~lWi-gt~~~Gl~~~~~~~~~-~~~~~~~~~l~~~~i~~i~~d~~g~lWi~T~~Glv~~~d 565 (781)
T 3v9f_A 490 SQLLENFVRSI--AQDSEGRFWI-GTFGGGVGIYTPDMQL-VRKFNQYEGFCSNTINQIYRSSKGQMWLATGEGLVCFPS 565 (781)
T ss_dssp SSCSCSCEEEE--EECTTCCEEE-EESSSCEEEECTTCCE-EEEECTTTTCSCSCEEEEEECTTSCEEEEETTEEEEESC
T ss_pred cccccceeEEE--EEcCCCCEEE-EEcCCCEEEEeCCCCe-EEEccCCCCCCCCeeEEEEECCCCCEEEEECCCceEEEC
Confidence 2344444 6777776544 4443447778865543 333321 0123568999999999877665555447776
Q ss_pred ccc
Q psy18231 532 AEE 534 (540)
Q Consensus 532 ~~~ 534 (540)
..+
T Consensus 566 ~~~ 568 (781)
T 3v9f_A 566 ARN 568 (781)
T ss_dssp TTT
T ss_pred CCC
Confidence 543
|
| >3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=98.72 E-value=9.9e-07 Score=76.73 Aligned_cols=136 Identities=6% Similarity=-0.083 Sum_probs=96.0
Q ss_pred EEecC-CeeEeeeCCCeEEEEeCCCCceEEeeeCCceEEEEEecCCcEEEeecCCCeEEEEeccccchhhhhccCc--CC
Q psy18231 384 VHVSD-HEILTASLDCRIRRYDIRTGNLVTDYVGEPIVDACFTRDCQCILTCSTDECLRLFDKATGELLEEYKGHK--SG 460 (540)
Q Consensus 384 l~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~--~~ 460 (540)
+++.+ .+.++.-.++.+.+||.++.+.+.++.-.. ....+.+|++.|+.+..++.|+++|..+.+.+.++.... .+
T Consensus 101 it~~g~~Ly~ltw~~~~v~V~D~~Tl~~~~ti~~~~-eGwGLt~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~ 179 (268)
T 3nok_A 101 LASDGERLYQLTWTEGLLFTWSGMPPQRERTTRYSG-EGWGLCYWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQP 179 (268)
T ss_dssp EEECSSCEEEEESSSCEEEEEETTTTEEEEEEECSS-CCCCEEEETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEE
T ss_pred EEEeCCEEEEEEccCCEEEEEECCcCcEEEEEeCCC-ceeEEecCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcc
Confidence 45555 444455578999999999999998887421 123344678888887789999999999998877765422 22
Q ss_pred c---ceEEEEecCCCCeEEEeeCCCcEEEEEecCCcceeEEEecc-----------cceeeeEEEEcCCCcEEEeec
Q psy18231 461 D---FRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSV-----------GKAVVNSLCSHPTRKHIMSAC 523 (540)
Q Consensus 461 v---~~~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~-----------~~~~v~~l~~s~d~~~l~s~~ 523 (540)
+ ..+ .|. +|+..+....++.|.+.|..+++.+..+...+ .....+.+||+|+++.|+.++
T Consensus 180 v~~lNeL--e~~-dG~lyanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTG 253 (268)
T 3nok_A 180 VELINEL--ECA-NGVIYANIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTG 253 (268)
T ss_dssp CCCEEEE--EEE-TTEEEEEETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred ccccccc--EEe-CCEEEEEECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeC
Confidence 2 333 444 67655555568899999999999999987431 124679999999876655554
|
| >3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.71 E-value=2.4e-06 Score=73.78 Aligned_cols=136 Identities=10% Similarity=-0.015 Sum_probs=95.6
Q ss_pred EEecC-CeeEeeeCCCeEEEEeCCCCceEEeeeCCceEEEEEecCCcEEEeecCCCeEEEEeccccchhhhhccCc--CC
Q psy18231 384 VHVSD-HEILTASLDCRIRRYDIRTGNLVTDYVGEPIVDACFTRDCQCILTCSTDECLRLFDKATGELLEEYKGHK--SG 460 (540)
Q Consensus 384 l~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~--~~ 460 (540)
+++.. ......-.++.+.+||.++.+.+.++.... ....+.++++.|+.+..++.|.++|..+.+.+.++.... .+
T Consensus 70 i~~~~~~ly~ltw~~~~v~v~D~~tl~~~~ti~~~~-~Gwglt~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~ 148 (243)
T 3mbr_X 70 IVAWRDRLIQLTWRNHEGFVYDLATLTPRARFRYPG-EGWALTSDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRP 148 (243)
T ss_dssp EEEETTEEEEEESSSSEEEEEETTTTEEEEEEECSS-CCCEEEECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEE
T ss_pred EEEeCCEEEEEEeeCCEEEEEECCcCcEEEEEeCCC-CceEEeeCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcc
Confidence 34444 344445568999999999999998887421 223445678877777788999999999988877765432 12
Q ss_pred ---cceEEEEecCCCCeEEEeeCCCcEEEEEecCCcceeEEEecc-----------cceeeeEEEEcCCCcEEEeec
Q psy18231 461 ---DFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSV-----------GKAVVNSLCSHPTRKHIMSAC 523 (540)
Q Consensus 461 ---v~~~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~-----------~~~~v~~l~~s~d~~~l~s~~ 523 (540)
+..+ .+. +|+..+..-.+..|.+.|..+++.+..+...+ .....+.++++|+++.|...+
T Consensus 149 ~~~lNeL--e~~-~G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTG 222 (243)
T 3mbr_X 149 LDNLNEL--EWV-NGELLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTG 222 (243)
T ss_dssp CCCEEEE--EEE-TTEEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEE
T ss_pred cccceee--EEe-CCEEEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEEC
Confidence 2233 333 66655555567899999999999999987432 124679999999877666665
|
| >2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* | Back alignment and structure |
|---|
Probab=98.69 E-value=3.1e-06 Score=78.49 Aligned_cols=103 Identities=17% Similarity=0.034 Sum_probs=64.1
Q ss_pred EEEEecC--CeeEee-eCCCeEEEEeCCCC---c--eEEeeeCCceEEEEEecCCcEEEeecC----------CCeEEEE
Q psy18231 382 TSVHVSD--HEILTA-SLDCRIRRYDIRTG---N--LVTDYVGEPIVDACFTRDCQCILTCST----------DECLRLF 443 (540)
Q Consensus 382 ~~l~~~~--~~l~~~-~~dg~i~iwd~~~~---~--~~~~~~~~~i~~~~~sp~~~~l~~~~~----------dg~i~i~ 443 (540)
..+++++ +.+.++ +..+.|..|++... . ....+. . ...++++++|++.++... .+.|..+
T Consensus 188 ~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~-g-P~gi~~d~~G~l~va~~~~~~~~~~~~~~~~v~~~ 265 (322)
T 2fp8_A 188 GGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIP-N-PGNIKRNADGHFWVSSSEELDGNMHGRVDPKGIKF 265 (322)
T ss_dssp CEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECS-S-EEEEEECTTSCEEEEEEEETTSSTTSCEEEEEEEE
T ss_pred cceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCC-C-CCCeEECCCCCEEEEecCcccccccCCCccEEEEE
Confidence 4577887 445444 56689999998752 1 122222 2 778999999987766544 4678888
Q ss_pred eccccchhhhhccCc----CCcceEEEEecCCCCeEEEeeCCCcEEEEEec
Q psy18231 444 DKATGELLEEYKGHK----SGDFRIECCLDSKDSQIFCGSSDGKIYKWQLV 490 (540)
Q Consensus 444 d~~~~~~~~~~~~~~----~~v~~~~~~~s~~~~~l~s~s~dg~i~iwd~~ 490 (540)
|. .++.+..+.... ..+..+ ++ .+++++++...++.|.++++.
T Consensus 266 d~-~G~~~~~~~~~~g~~~~~~~~~--~~-~~g~L~v~~~~~~~i~~~~~~ 312 (322)
T 2fp8_A 266 DE-FGNILEVIPLPPPFAGEHFEQI--QE-HDGLLYIGTLFHGSVGILVYD 312 (322)
T ss_dssp CT-TSCEEEEEECCTTTTTSCCCEE--EE-ETTEEEEECSSCSEEEEEEC-
T ss_pred CC-CCCEEEEEECCCCCccccceEE--EE-eCCEEEEeecCCCceEEEecc
Confidence 86 466665554332 223334 34 356556666677888888864
|
| >3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=98.65 E-value=1.9e-06 Score=75.02 Aligned_cols=108 Identities=8% Similarity=0.033 Sum_probs=76.7
Q ss_pred EEEEeCCCCCEEEEeeCCCcEEEEcCCCCeeEEEeecCCcceeEEEEeeCCCeE-EEeeCCCeEEEEEcCCCceeEeccc
Q psy18231 168 MHTRFPVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQI-ASGASDKSVILWEVTTGQPVRRWRE 246 (540)
Q Consensus 168 ~~v~~spdg~~lat~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l-~s~s~dg~i~iwd~~~~~~~~~~~~ 246 (540)
..+.|+ ++.+..+.+.+|.|+++|+++++.+.++ - ..........+++..| +..-.++.+.++|..+.+.+.++..
T Consensus 58 qGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l-~~~~FgeGit~~g~~Ly~ltw~~~~v~V~D~~Tl~~~~ti~~ 134 (268)
T 3nok_A 58 QGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME-R-LGNIFAEGLASDGERLYQLTWTEGLLFTWSGMPPQRERTTRY 134 (268)
T ss_dssp EEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE-E-CTTCCEEEEEECSSCEEEEESSSCEEEEEETTTTEEEEEEEC
T ss_pred ceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE-C-CCCcceeEEEEeCCEEEEEEccCCEEEEEECCcCcEEEEEeC
Confidence 577776 3556667778899999999999988887 2 2334443333444444 4455688999999999999988864
Q ss_pred cCCceeEEEECCCCCEEEEecCCCcEEEEEecCCC
Q psy18231 247 HASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRS 281 (540)
Q Consensus 247 h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~ 281 (540)
.. .-..++ +|++.|+.+..++.|.++|..+.+
T Consensus 135 ~~-eGwGLt--~Dg~~L~vSdGs~~l~~iDp~T~~ 166 (268)
T 3nok_A 135 SG-EGWGLC--YWNGKLVRSDGGTMLTFHEPDGFA 166 (268)
T ss_dssp SS-CCCCEE--EETTEEEEECSSSEEEEECTTTCC
T ss_pred CC-ceeEEe--cCCCEEEEECCCCEEEEEcCCCCe
Confidence 32 224444 467777777778899999988876
|
| >2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 | Back alignment and structure |
|---|
Probab=98.63 E-value=5.8e-05 Score=69.26 Aligned_cols=235 Identities=11% Similarity=0.041 Sum_probs=133.7
Q ss_pred cCeEEEEeCCCCCEEEEeeCCCcEEEEcCCCCeeEEEeecCCcceeEEEEeeCCCeEEEeeCCC--eEEEEEcCCCceeE
Q psy18231 165 SGLMHTRFPVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDK--SVILWEVTTGQPVR 242 (540)
Q Consensus 165 ~~v~~v~~spdg~~lat~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~dg--~i~iwd~~~~~~~~ 242 (540)
.....++|+++|+++++-..++.|..||.... ....+. .......+++.++++++++..... .|..+|..+++...
T Consensus 32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~-~~~~~~-~~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~~~ 109 (306)
T 2p4o_A 32 TFLENLASAPDGTIFVTNHEVGEIVSITPDGN-QQIHAT-VEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVET 109 (306)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTTCC-EEEEEE-CSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEE
T ss_pred CCcceEEECCCCCEEEEeCCCCeEEEECCCCc-eEEEEe-CCCCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeEEE
Confidence 45678999999997777667899999997653 333333 345788999999999766654432 46667777776543
Q ss_pred ecc-ccCCceeEEEECCCCCEEEEecCCCcEEEEEecCCCCCCcchhhhhHhhhhcCCceeEEEEeecccccccccCcee
Q psy18231 243 RWR-EHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHLSNGLLT 321 (540)
Q Consensus 243 ~~~-~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (540)
... ........++..+++..+++-..++.|.++|...++.....
T Consensus 110 ~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~----------------------------------- 154 (306)
T 2p4o_A 110 LLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWL----------------------------------- 154 (306)
T ss_dssp EEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEE-----------------------------------
T ss_pred EEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEE-----------------------------------
Confidence 221 11223345555555555555545787777776543100000
Q ss_pred eEEEeeeecccccceeeeeeccceeEEEeecccceecccccccccccchhhhhhcccccEEEEEecCC-eeEeeeCCCeE
Q psy18231 322 KLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEARDSITSVHVSDH-EILTASLDCRI 400 (540)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~-~l~~~~~dg~i 400 (540)
.. +. .... .....-.....+..+.+ ++++-...+.|
T Consensus 155 ----------------------------~~--~~-----~~~~--------~~~~~~~~pngis~dg~~lyv~d~~~~~I 191 (306)
T 2p4o_A 155 ----------------------------EH--PM-----LARS--------NSESVFPAANGLKRFGNFLYVSNTEKMLL 191 (306)
T ss_dssp ----------------------------EC--GG-----GSCS--------STTCCSCSEEEEEEETTEEEEEETTTTEE
T ss_pred ----------------------------EC--Cc-----cccc--------cccCCCCcCCCcCcCCCEEEEEeCCCCEE
Confidence 00 00 0000 00000012223333333 34455567889
Q ss_pred EEEeCCC-Cce--EEee-eCCceEEEEEecCCcEEEeecCCCeEEEEeccccch--hhhhccCcCCcceEEEEec---CC
Q psy18231 401 RRYDIRT-GNL--VTDY-VGEPIVDACFTRDCQCILTCSTDECLRLFDKATGEL--LEEYKGHKSGDFRIECCLD---SK 471 (540)
Q Consensus 401 ~iwd~~~-~~~--~~~~-~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~--~~~~~~~~~~v~~~~~~~s---~~ 471 (540)
..||+.. ++. ...+ .......++++++|+++++....+.|.++|.. ++. +..+........++ +|. ++
T Consensus 192 ~~~~~~~~g~~~~~~~~~~~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~~~~~~~~~~~~~p~~~--a~~g~~~d 268 (306)
T 2p4o_A 192 LRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTIIAQAEQGVIGSTAV--AFGQTEGD 268 (306)
T ss_dssp EEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEEECGGGTCTTEEEE--EECCSTTT
T ss_pred EEEEeCCCCCCCccEEEeccCCCCCeEECCCCCEEEEeCCCCeEEEECCC-CCEEEEeecccccCCceEE--EEecccCC
Confidence 9999874 321 1111 12345678999999988877778899999975 544 22233222223344 787 78
Q ss_pred CCeEEEeeCCC
Q psy18231 472 DSQIFCGSSDG 482 (540)
Q Consensus 472 ~~~l~s~s~dg 482 (540)
++.|+.++..+
T Consensus 269 ~~~LyVt~~~~ 279 (306)
T 2p4o_A 269 CTAIYVVTNGG 279 (306)
T ss_dssp TTEEEEEECTT
T ss_pred CCEEEEECCCC
Confidence 77777665543
|
| >2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 | Back alignment and structure |
|---|
Probab=98.63 E-value=3.2e-05 Score=71.02 Aligned_cols=233 Identities=9% Similarity=0.007 Sum_probs=132.7
Q ss_pred CCeeEEEeecCCcceeEEEEeeCCCeEEEeeCCCeEEEEEcCCCceeEeccccCCceeEEEECCCCCEEEEecCCC--cE
Q psy18231 195 RNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDN--TV 272 (540)
Q Consensus 195 ~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg--~i 272 (540)
..+.+..+... .....++|+++++++++-..++.|..||... +....+. ....+..+++.++++++++..... .|
T Consensus 21 ~~~~~~~~p~~-~~pegia~~~~g~lyv~d~~~~~I~~~d~~g-~~~~~~~-~~~~p~gia~~~dG~l~vad~~~~~~~v 97 (306)
T 2p4o_A 21 PAKIITSFPVN-TFLENLASAPDGTIFVTNHEVGEIVSITPDG-NQQIHAT-VEGKVSGLAFTSNGDLVATGWNADSIPV 97 (306)
T ss_dssp CEEEEEEECTT-CCEEEEEECTTSCEEEEETTTTEEEEECTTC-CEEEEEE-CSSEEEEEEECTTSCEEEEEECTTSCEE
T ss_pred CceEeEeCCCC-CCcceEEECCCCCEEEEeCCCCeEEEECCCC-ceEEEEe-CCCCceeEEEcCCCcEEEEeccCCcceE
Confidence 34555556432 4577899999999777777889999999764 3333332 345688999999998665543322 35
Q ss_pred EEEEecCCCCCCcchhhhhHhhhhcCCceeEEEEeecccccccccCceeeEEEeeeecccccceeeeeeccceeEEEeec
Q psy18231 273 MMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDF 352 (540)
Q Consensus 273 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (540)
..+|..+++...+. .
T Consensus 98 ~~~d~~~g~~~~~~----------------------------------------------------------------~- 112 (306)
T 2p4o_A 98 VSLVKSDGTVETLL----------------------------------------------------------------T- 112 (306)
T ss_dssp EEEECTTSCEEEEE----------------------------------------------------------------E-
T ss_pred EEEcCCCCeEEEEE----------------------------------------------------------------e-
Confidence 55665554410000 0
Q ss_pred ccceecccccccccccchhhhhhcccccEEEEEecC-Ce-eEeeeCCCeEEEEeCCCCce-EEee---------eC--Cc
Q psy18231 353 LGSTQIGDVTPISIHNSCFQALKEARDSITSVHVSD-HE-ILTASLDCRIRRYDIRTGNL-VTDY---------VG--EP 418 (540)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~-~~-l~~~~~dg~i~iwd~~~~~~-~~~~---------~~--~~ 418 (540)
.. .......++..+ .. +++-..++.|..+|..+++. +... .. ..
T Consensus 113 ---------------------~~-~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~ 170 (306)
T 2p4o_A 113 ---------------------LP-DAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPA 170 (306)
T ss_dssp ---------------------CT-TCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCS
T ss_pred ---------------------CC-CccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCc
Confidence 00 000011112122 33 33333577888888765421 1100 01 23
Q ss_pred eEEEEEecCCcEEEe-ecCCCeEEEEeccc-cch--hhhhccCcCCcceEEEEecCCCCeEEEeeCCCcEEEEEecCCcc
Q psy18231 419 IVDACFTRDCQCILT-CSTDECLRLFDKAT-GEL--LEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQ 494 (540)
Q Consensus 419 i~~~~~sp~~~~l~~-~~~dg~i~i~d~~~-~~~--~~~~~~~~~~v~~~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~ 494 (540)
...+ +|+++.|+. -...+.|..||+.. ++. ...+... .....+ +++++|+++++....+.|.++|. +++.
T Consensus 171 pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~~-~~P~gi--~vd~dG~l~va~~~~~~V~~~~~-~G~~ 244 (306)
T 2p4o_A 171 ANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQ-TNIDDF--AFDVEGNLYGATHIYNSVVRIAP-DRST 244 (306)
T ss_dssp EEEE--EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEES-CCCSSE--EEBTTCCEEEECBTTCCEEEECT-TCCE
T ss_pred CCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEecc-CCCCCe--EECCCCCEEEEeCCCCeEEEECC-CCCE
Confidence 4445 888875554 45578999999864 321 1111111 122335 78899988777777889999995 4655
Q ss_pred eeEEEecccceeeeEEEEc---CCCcEEEeec
Q psy18231 495 ISTLIHSVGKAVVNSLCSH---PTRKHIMSAC 523 (540)
Q Consensus 495 ~~~~~~~~~~~~v~~l~~s---~d~~~l~s~~ 523 (540)
.............++++|. ||++.|+.++
T Consensus 245 ~~~~~~~~~~~~p~~~a~~g~~~d~~~LyVt~ 276 (306)
T 2p4o_A 245 TIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVT 276 (306)
T ss_dssp EEEECGGGTCTTEEEEEECCSTTTTTEEEEEE
T ss_pred EEEeecccccCCceEEEEecccCCCCEEEEEC
Confidence 3322211223568999998 8877666554
|
| >3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.52 E-value=0.00015 Score=67.79 Aligned_cols=240 Identities=7% Similarity=-0.073 Sum_probs=140.0
Q ss_pred CeEEEEeCCCCCEEEEeeCCCcEEEEcCCCCeeEEEeecCCcceeEEEEeeCCCeEE-EeeCCCeEEEEEcCCCceeEec
Q psy18231 166 GLMHTRFPVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIA-SGASDKSVILWEVTTGQPVRRW 244 (540)
Q Consensus 166 ~v~~v~~spdg~~lat~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~-s~s~dg~i~iwd~~~~~~~~~~ 244 (540)
..+|.+..+++ +|+.+. ...|+..++........+.. ......++|++.+..|. +-...+.|..+++..+.....+
T Consensus 35 ~~~C~~~~~~~-~ll~~~-~~~I~~i~~~g~~~~~~~~~-~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~ 111 (349)
T 3v64_C 35 RRSCKALGPEP-VLLFAN-RIDIRQVLPHRSEYTLLLNN-LENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVV 111 (349)
T ss_dssp SSCEEESSSCC-EEEEEC-BSCEEEECTTSCCEEEEECS-CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEE
T ss_pred CCcccccccCc-eeEeec-ccceEEEeCCCCeeEEeecC-CCceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEE
Confidence 34566666644 444333 45688888866554444443 44578999997655555 4456788999998766544433
Q ss_pred cccCCceeEEEECCC-CCEEEEecCCCcEEEEEecCCCCCCcchhhhhHhhhhcCCceeEEEEeecccccccccCceeeE
Q psy18231 245 REHASKVTCVKFNED-SSVVISGSQDNTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHLSNGLLTKL 323 (540)
Q Consensus 245 ~~h~~~v~~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (540)
.........+++.+. +++.++-...+.|.+.++.......+
T Consensus 112 ~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l-------------------------------------- 153 (349)
T 3v64_C 112 STGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVL-------------------------------------- 153 (349)
T ss_dssp CSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEE--------------------------------------
T ss_pred eCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEE--------------------------------------
Confidence 333345678899874 44555555567888888764321000
Q ss_pred EEeeeecccccceeeeeeccceeEEEeecccceecccccccccccchhhhhhcccccEEEEEecC--CeeE-eeeCC-Ce
Q psy18231 324 VFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEARDSITSVHVSD--HEIL-TASLD-CR 399 (540)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~--~~l~-~~~~d-g~ 399 (540)
....-.....++++| ..+. +-... +.
T Consensus 154 --------------------------------------------------~~~~l~~P~~iavdp~~g~ly~td~~~~~~ 183 (349)
T 3v64_C 154 --------------------------------------------------LWQSLEKPRAIALHPMEGTIYWTDWGNTPR 183 (349)
T ss_dssp --------------------------------------------------ECTTCSCEEEEEEETTTTEEEEEECSSSCE
T ss_pred --------------------------------------------------EeCCCCCcceEEEecCcCeEEEeccCCCCE
Confidence 001112346777776 4444 33344 77
Q ss_pred EEEEeCCCCceEEeee--CCceEEEEEecCCcEEEe-ecCCCeEEEEeccccchhhhhccCcCCcceEEEEecCCCCeEE
Q psy18231 400 IRRYDIRTGNLVTDYV--GEPIVDACFTRDCQCILT-CSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIF 476 (540)
Q Consensus 400 i~iwd~~~~~~~~~~~--~~~i~~~~~sp~~~~l~~-~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~s~~~~~l~ 476 (540)
|..++++......... ......++++|++..|+. -...+.|..+|+........+.........+ ++ ..+..++
T Consensus 184 I~r~~~dG~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~gi--av-~~~~ly~ 260 (349)
T 3v64_C 184 IEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAI--TV-FEDSLYW 260 (349)
T ss_dssp EEEEETTSCSCEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEE--EE-ETTEEEE
T ss_pred EEEEeCCCCCcEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEEEEeCCCCCceEE--EE-ECCEEEE
Confidence 8888887543322222 245789999986655544 4556789999976432221122222222344 44 2444555
Q ss_pred EeeCCCcEEEEEecCCcceeEEE
Q psy18231 477 CGSSDGKIYKWQLVDSSQISTLI 499 (540)
Q Consensus 477 s~s~dg~i~iwd~~~~~~~~~~~ 499 (540)
+-...+.|..++..+++.+..+.
T Consensus 261 td~~~~~V~~~~~~~G~~~~~i~ 283 (349)
T 3v64_C 261 TDWHTKSINSANKFTGKNQEIIR 283 (349)
T ss_dssp EETTTTEEEEEETTTCCSCEEEE
T ss_pred ecCCCCeEEEEEccCCCccEEec
Confidence 55567788888877777766665
|
| >2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major} | Back alignment and structure |
|---|
Probab=98.52 E-value=7.3e-06 Score=85.30 Aligned_cols=112 Identities=12% Similarity=0.044 Sum_probs=75.7
Q ss_pred CeEEEEeC-CCCCEEEEee-CC----CcEEEEcCCCC-eeEEE-eecCCcceeEEEEeeCCCeEEEeeCC-----CeEEE
Q psy18231 166 GLMHTRFP-VDGSYCLTCG-SD----KKIKLWNPYRN-LLLKT-YGGHAHEVNDATAACDSSQIASGASD-----KSVIL 232 (540)
Q Consensus 166 ~v~~v~~s-pdg~~lat~~-~d----g~i~iwd~~~~-~~~~~-~~~h~~~v~~l~~sp~~~~l~s~s~d-----g~i~i 232 (540)
.+...+|| |||++||-+. .+ .+|+++|+.++ +.+.. +. .....++|+||++.|+....| ..|.+
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~---~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~ 251 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVS---GTNGEIVWGPDHTSLFYVTKDETLRENKVWR 251 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEE---EECSCCEECSSTTEEEEEEECTTCCEEEEEE
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCcccc---CceeeEEEecCCCEEEEEEECCCCCCCEEEE
Confidence 57789999 9999988443 22 35999999988 63211 11 224578999999988877665 36888
Q ss_pred EEcCCCce--eEecc-ccCCceeEEEECCCCCEEEEecC---CCcEEEEEecCC
Q psy18231 233 WEVTTGQP--VRRWR-EHASKVTCVKFNEDSSVVISGSQ---DNTVMMWDVKSR 280 (540)
Q Consensus 233 wd~~~~~~--~~~~~-~h~~~v~~~~~~~~~~~l~s~~~---dg~i~iwd~~~~ 280 (540)
+++.+++. ...+. ........+.|+|||++|+..+. ...|.++|+.++
T Consensus 252 ~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~ 305 (751)
T 2xe4_A 252 HVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKG 305 (751)
T ss_dssp EETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSC
T ss_pred EECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCC
Confidence 88877642 22222 22345677899999998876553 235777777654
|
| >3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.52 E-value=2.9e-05 Score=67.04 Aligned_cols=110 Identities=11% Similarity=0.055 Sum_probs=76.3
Q ss_pred eEEEEeCCCCCEEEEeeCC--CcEEEEcCCCCeeEEEeecCCcceeEEEEeeCCCe-EEEeeCCCeEEEEEcCCCceeEe
Q psy18231 167 LMHTRFPVDGSYCLTCGSD--KKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQ-IASGASDKSVILWEVTTGQPVRR 243 (540)
Q Consensus 167 v~~v~~spdg~~lat~~~d--g~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~-l~s~s~dg~i~iwd~~~~~~~~~ 243 (540)
...+.|++ +.+..+.+.+ +.|+.+|+++++.+.++.-.. ........+++.. ....-.++.+.++|..+.+.+.+
T Consensus 23 tqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~-~~fgeGi~~~~~~ly~ltw~~~~v~v~D~~tl~~~~t 100 (243)
T 3mbr_X 23 TEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPP-PYFGAGIVAWRDRLIQLTWRNHEGFVYDLATLTPRAR 100 (243)
T ss_dssp EEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCT-TCCEEEEEEETTEEEEEESSSSEEEEEETTTTEEEEE
T ss_pred cccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCC-CcceeEEEEeCCEEEEEEeeCCEEEEEECCcCcEEEE
Confidence 55788886 5555565654 489999999999998886432 3333333333444 44455689999999999999988
Q ss_pred ccccCCceeEEEECCCCCEEEEecCCCcEEEEEecCCC
Q psy18231 244 WREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRS 281 (540)
Q Consensus 244 ~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~ 281 (540)
+..... =..++ +++..|+.+..++.|.++|..+.+
T Consensus 101 i~~~~~-Gwglt--~dg~~L~vSdgs~~l~~iDp~t~~ 135 (243)
T 3mbr_X 101 FRYPGE-GWALT--SDDSHLYMSDGTAVIRKLDPDTLQ 135 (243)
T ss_dssp EECSSC-CCEEE--ECSSCEEEECSSSEEEEECTTTCC
T ss_pred EeCCCC-ceEEe--eCCCEEEEECCCCeEEEEeCCCCe
Confidence 864332 24554 456666666668899999988876
|
| >2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus} | Back alignment and structure |
|---|
Probab=98.47 E-value=0.00068 Score=62.65 Aligned_cols=149 Identities=8% Similarity=0.048 Sum_probs=82.7
Q ss_pred ccEEEEEecC-CeeEeeeCCCeEEE-EeC--CCCceEEeeeCCceEEEEEecCCcEEEeecCCCeEEEEeccccchhhhh
Q psy18231 379 DSITSVHVSD-HEILTASLDCRIRR-YDI--RTGNLVTDYVGEPIVDACFTRDCQCILTCSTDECLRLFDKATGELLEEY 454 (540)
Q Consensus 379 ~~v~~l~~~~-~~l~~~~~dg~i~i-wd~--~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~ 454 (540)
..+..+.+.+ ..++..+.+|.+.. .|- .+-+.+.......+..+.++++++.+++ +.+|.+++.+...++.-..+
T Consensus 163 ~~~~~~~~~~~~~~~~~g~~G~~~~S~d~gG~tW~~~~~~~~~~~~~~~~~~~g~~~~~-~~~G~~~~s~~D~G~tW~~~ 241 (327)
T 2xbg_A 163 GVMRNLNRSPSGEYVAVSSRGSFYSTWEPGQTAWEPHNRTTSRRLHNMGFTPDGRLWMI-VNGGKIAFSDPDNSENWGEL 241 (327)
T ss_dssp CCEEEEEECTTSCEEEEETTSSEEEEECTTCSSCEEEECCSSSCEEEEEECTTSCEEEE-ETTTEEEEEETTEEEEECCC
T ss_pred cceEEEEEcCCCcEEEEECCCcEEEEeCCCCCceeECCCCCCCccceeEECCCCCEEEE-eCCceEEEecCCCCCeeEec
Confidence 3566777776 44444445555443 332 2333333223457888999999876654 45788877643323322222
Q ss_pred cc----CcCCcceEEEEecCCCCeEEEeeCCCcEEEEEecCCcceeEEEec-ccceeeeEEEEcCCCcEEEeecCCeeEE
Q psy18231 455 KG----HKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHS-VGKAVVNSLCSHPTRKHIMSACGNNVKL 529 (540)
Q Consensus 455 ~~----~~~~v~~~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~-~~~~~v~~l~~s~d~~~l~s~~d~~i~i 529 (540)
.. +...+..+ ++.+++..++++. +|.| .+....++.-..+... .....+.++.|.+++..++.+.+|.|.-
T Consensus 242 ~~~~~~~~~~~~~v--~~~~~~~~~~~g~-~g~i-~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~~~~~~G~~G~i~~ 317 (327)
T 2xbg_A 242 LSPLRRNSVGFLDL--AYRTPNEVWLAGG-AGAL-LCSQDGGQTWQQDVDVKKVPSNFYKILFFSPDQGFILGQKGILLR 317 (327)
T ss_dssp BCTTSSCCSCEEEE--EESSSSCEEEEES-TTCE-EEESSTTSSCEECGGGTTSSSCCCEEEEEETTEEEEECSTTEEEE
T ss_pred cCCcccCCcceEEE--EecCCCEEEEEeC-CCeE-EEeCCCCcccEEcCccCCCCCCeEEEEEECCCceEEEcCCceEEE
Confidence 21 11224444 6777777666554 6766 3444445544444311 1235678899987777666666997766
Q ss_pred EEc
Q psy18231 530 WTA 532 (540)
Q Consensus 530 w~~ 532 (540)
++-
T Consensus 318 ~~~ 320 (327)
T 2xbg_A 318 YVT 320 (327)
T ss_dssp ECC
T ss_pred EcC
Confidence 553
|
| >1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A | Back alignment and structure |
|---|
Probab=98.45 E-value=4e-06 Score=86.03 Aligned_cols=72 Identities=14% Similarity=0.214 Sum_probs=50.3
Q ss_pred eEEEEee-CCCeEEEeeCCC-----------eEEEEEcCCCceeE--ecc-ccCCceeEEEECCCCCEEEEecC-CCcEE
Q psy18231 210 NDATAAC-DSSQIASGASDK-----------SVILWEVTTGQPVR--RWR-EHASKVTCVKFNEDSSVVISGSQ-DNTVM 273 (540)
Q Consensus 210 ~~l~~sp-~~~~l~s~s~dg-----------~i~iwd~~~~~~~~--~~~-~h~~~v~~~~~~~~~~~l~s~~~-dg~i~ 273 (540)
..+++.+ +++.++.|+.+. .+.+||..+++... .+. .+.....++++..++++++.|+. +..+.
T Consensus 189 ~~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~ 268 (656)
T 1k3i_A 189 AAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTS 268 (656)
T ss_dssp SEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEE
T ss_pred eeEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceE
Confidence 3567777 888888887543 68899998876332 221 23334456788889999999984 45799
Q ss_pred EEEecCCC
Q psy18231 274 MWDVKSRS 281 (540)
Q Consensus 274 iwd~~~~~ 281 (540)
+||..+.+
T Consensus 269 ~yd~~t~~ 276 (656)
T 1k3i_A 269 LYDSSSDS 276 (656)
T ss_dssp EEEGGGTE
T ss_pred EecCcCCc
Confidence 99987654
|
| >3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.43 E-value=0.00018 Score=63.00 Aligned_cols=201 Identities=7% Similarity=0.119 Sum_probs=130.8
Q ss_pred ecCeEEEEeCCCCCEEE-EeeCCCcEEEEcCCCCeeEEEeec-CCcceeEEEEeeCCCeEEEeeCCCeEEEEEcCCCcee
Q psy18231 164 LSGLMHTRFPVDGSYCL-TCGSDKKIKLWNPYRNLLLKTYGG-HAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPV 241 (540)
Q Consensus 164 ~~~v~~v~~spdg~~la-t~~~dg~i~iwd~~~~~~~~~~~~-h~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~ 241 (540)
.+.+..++|+|++..|+ +...++.|...|.. ++.+..+.- -......+++.+++.++++.-.++.+.++++.....+
T Consensus 26 ~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~~~~~i 104 (255)
T 3qqz_A 26 TNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLTPNSEV 104 (255)
T ss_dssp CSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEECTTCCE
T ss_pred ccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcCCCCee
Confidence 35799999999876555 56778899999987 888887742 2356788899988887777666788999988655422
Q ss_pred ---Eecc------ccCCceeEEEECCCCCEEEEecCCCcEEEEEecCCCCCCcchhhhhHhhhhcCCceeEEEEeecccc
Q psy18231 242 ---RRWR------EHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTK 312 (540)
Q Consensus 242 ---~~~~------~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (540)
.... ........++|+|+++.|+++.+.....+|.+..... ...
T Consensus 105 ~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~-~~~-------------------------- 157 (255)
T 3qqz_A 105 KILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLS-SNE-------------------------- 157 (255)
T ss_dssp EEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTC-SSC--------------------------
T ss_pred eeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEccccc-CCc--------------------------
Confidence 2221 2344568999999988888877766667777652110 000
Q ss_pred cccccCceeeEEEeeeecccccceeeeeeccceeEEEeecccceecccccccccccchhhhhhcccccEEEEEecC---C
Q psy18231 313 NHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEARDSITSVHVSD---H 389 (540)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~---~ 389 (540)
+.+.+ .... .-..+...+.+++++| .
T Consensus 158 ----------------------------------l~i~~----------------~~~~-~~~~~~~d~S~l~~dp~tg~ 186 (255)
T 3qqz_A 158 ----------------------------------LHISK----------------DKAL-QRQFTLDDVSGAEFNQQKNT 186 (255)
T ss_dssp ----------------------------------CEEEE----------------CHHH-HHTCCSSCCCEEEEETTTTE
T ss_pred ----------------------------------eeeec----------------chhh-ccccccCCceeEEEcCCCCe
Confidence 00000 0000 0011123457888888 5
Q ss_pred eeEeeeCCCeEEEEeCCCCceEEeee--C---------CceEEEEEecCCcEEEeecCCCeEEEEec
Q psy18231 390 EILTASLDCRIRRYDIRTGNLVTDYV--G---------EPIVDACFTRDCQCILTCSTDECLRLFDK 445 (540)
Q Consensus 390 ~l~~~~~dg~i~iwd~~~~~~~~~~~--~---------~~i~~~~~sp~~~~l~~~~~dg~i~i~d~ 445 (540)
+++....+..+..+|.. ++.+..+. . ..--.++|.++|++.++ ++-+.++.|.-
T Consensus 187 lliLS~~s~~L~~~d~~-g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIv-sE~n~~y~f~~ 251 (255)
T 3qqz_A 187 LLVLSHESRALQEVTLV-GEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIV-SEPNRFYRFTP 251 (255)
T ss_dssp EEEEETTTTEEEEECTT-CCEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEE-ETTTEEEEEEC
T ss_pred EEEEECCCCeEEEEcCC-CCEEEEEEcCCccCCcccccCCCCeeEECCCCCEEEE-cCCceEEEEEe
Confidence 67777788889999977 44544442 1 25689999999985555 66677777754
|
| >3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.43 E-value=0.00018 Score=68.19 Aligned_cols=240 Identities=6% Similarity=-0.078 Sum_probs=139.4
Q ss_pred CeEEEEeCCCCCEEEEeeCCCcEEEEcCCCCeeEEEeecCCcceeEEEEeeCCCeE-EEeeCCCeEEEEEcCCCceeEec
Q psy18231 166 GLMHTRFPVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQI-ASGASDKSVILWEVTTGQPVRRW 244 (540)
Q Consensus 166 ~v~~v~~spdg~~lat~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l-~s~s~dg~i~iwd~~~~~~~~~~ 244 (540)
.-+|.+..+++ +|+.+. ...|+..++........+. .......++|.+.+..| ++-...+.|..+++..+.....+
T Consensus 78 ~~~C~~~~~~~-~l~~~~-~~~I~~i~~~~~~~~~~~~-~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~ 154 (386)
T 3v65_B 78 RRSCKALGPEP-VLLFAN-RIDIRQVLPHRSEYTLLLN-NLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVV 154 (386)
T ss_dssp SSCEEECSSCC-EEEEEC-BSCEEEECTTSCCCEEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEE
T ss_pred CCeECCccccc-eeEeec-CccceeeccCCCcEEEEec-CCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEE
Confidence 34455556644 444433 4678888987665544444 34557899999755555 45556788999998766544433
Q ss_pred cccCCceeEEEECCCC-CEEEEecCCCcEEEEEecCCCCCCcchhhhhHhhhhcCCceeEEEEeecccccccccCceeeE
Q psy18231 245 REHASKVTCVKFNEDS-SVVISGSQDNTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHLSNGLLTKL 323 (540)
Q Consensus 245 ~~h~~~v~~~~~~~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (540)
.........+++.+.+ .+.++-...+.|.+.++.......
T Consensus 155 ~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~--------------------------------------- 195 (386)
T 3v65_B 155 STGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKV--------------------------------------- 195 (386)
T ss_dssp CSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEE---------------------------------------
T ss_pred eCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEE---------------------------------------
Confidence 3333455778888744 444555556677776665332100
Q ss_pred EEeeeecccccceeeeeeccceeEEEeecccceecccccccccccchhhhhhcccccEEEEEecC--CeeEee-eCC-Ce
Q psy18231 324 VFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEARDSITSVHVSD--HEILTA-SLD-CR 399 (540)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~--~~l~~~-~~d-g~ 399 (540)
.....-.....++++| ..|..+ ... +.
T Consensus 196 -------------------------------------------------l~~~~l~~P~giavdp~~g~ly~td~~~~~~ 226 (386)
T 3v65_B 196 -------------------------------------------------LLWQSLEKPRAIALHPMEGTIYWTDWGNTPR 226 (386)
T ss_dssp -------------------------------------------------EECSSCSCEEEEEEETTTTEEEEEECSSSCE
T ss_pred -------------------------------------------------eecCCCCCCcEEEEEcCCCeEEEeccCCCCE
Confidence 0001112346677775 444433 334 67
Q ss_pred EEEEeCCCCceEEeeeC--CceEEEEEecCCcEEE-eecCCCeEEEEeccccchhhhhccCcCCcceEEEEecCCCCeEE
Q psy18231 400 IRRYDIRTGNLVTDYVG--EPIVDACFTRDCQCIL-TCSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIF 476 (540)
Q Consensus 400 i~iwd~~~~~~~~~~~~--~~i~~~~~sp~~~~l~-~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~s~~~~~l~ 476 (540)
|..++++.......... .....++++|++..|+ +-+..+.|..+|+........+.........+ ++ ..+..++
T Consensus 227 I~r~~~dG~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~gi--av-~~~~ly~ 303 (386)
T 3v65_B 227 IEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAI--TV-FEDSLYW 303 (386)
T ss_dssp EEEEETTSCSCEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCEEEECSSCSSEEEE--EE-ETTEEEE
T ss_pred EEEEeCCCCCcEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeEEEEECCCCCceEE--EE-ECCEEEE
Confidence 88888875433322222 4578999998665554 44557889999976432221222122222344 45 3445556
Q ss_pred EeeCCCcEEEEEecCCcceeEEE
Q psy18231 477 CGSSDGKIYKWQLVDSSQISTLI 499 (540)
Q Consensus 477 s~s~dg~i~iwd~~~~~~~~~~~ 499 (540)
+-...+.|..++..+++.+..+.
T Consensus 304 td~~~~~V~~~~~~~G~~~~~i~ 326 (386)
T 3v65_B 304 TDWHTKSINSANKFTGKNQEIIR 326 (386)
T ss_dssp EETTTTEEEEEETTTCCSCEEEE
T ss_pred eeCCCCeEEEEECCCCcceEEEc
Confidence 66677889888877888777776
|
| >2r14_A Morphinone reductase; H-tunnelling, flavoprotein, NADH, hydride transfer, oxidoreductase; HET: FMN TXD; 1.40A {Pseudomonas putida} PDB: 3gx9_A* 1gwj_A* | Back alignment and structure |
|---|
Probab=98.38 E-value=3.8e-07 Score=85.05 Aligned_cols=112 Identities=12% Similarity=0.077 Sum_probs=80.0
Q ss_pred cceecCCceEEeccCCC-------CCHHHHHHHHHcCCCEEEeeeeecccccccc--------hhh---ccccc--cCCC
Q psy18231 10 RSTLLKNLKHCDSTLWT-------SKLNFRQLVRSHNVDLCFTPMIIADSFIKSS--------KAR---NNEFS--TSPE 69 (540)
Q Consensus 10 ~~~~~~~~~~~ap~~~~-------~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~---~~~~~--~~~~ 69 (540)
+.+.+++|+++|||++. |+..+|..+++.++++++||++.....-+.. ... .+.+. .+..
T Consensus 18 g~~~l~NRiv~aPm~~~~a~~g~pt~~~~~~y~~rA~~GLiitE~~~v~~~g~~~~~~~gi~~d~~i~~~k~l~~avh~~ 97 (377)
T 2r14_A 18 GSLSLPNRVIMAPLTRSRTPDSVPGRLQQIYYGQRASAGLIISEATNISPTARGYVYTPGIWTDAQEAGWKGVVEAVHAK 97 (377)
T ss_dssp TTEEESCSEEECCCCCCCCTTSCCCHHHHHHHHHTTTSSCEEEEEEESSGGGCCBTTCCBSSSHHHHHHHHHHHHHHHHT
T ss_pred CCEEecCCeEECCCcCCcCCCCCCCHHHHHHHHHHhcCCEEEEcceeeccccccCCCCcccCCHHHHHHHHHHHHHHhhc
Confidence 46889999999999988 9999999999999999999998765322221 111 22221 3566
Q ss_pred CCCEEEEEecC-------------------------------------------Ch------------hHHHHHHHHhc-
Q psy18231 70 DTPLVVQFASN-------------------------------------------NH------------DDFVRATQYVA- 93 (540)
Q Consensus 70 ~~~~~~q~~~~-------------------------------------------~~------------~~~~~~~~~~~- 93 (540)
+.++++|++.. .| +++++||+...
T Consensus 98 G~~i~~QL~H~Gr~~~~~~~~~~~~~~apS~i~~~~~~~~~~~~~~~~~~~~~~~p~~mt~~eI~~~i~~f~~aA~~a~~ 177 (377)
T 2r14_A 98 GGRIALQLWHVGRVSHELVQPDGQQPVAPSALKAEGAECFVEFEDGTAGLHPTSTPRALETDEIPGIVEDYRQAAQRAKR 177 (377)
T ss_dssp TCCEEEEEECCTTSCCTTTSGGGCCCEESSSCCCTTCEEEEECTTSCEEEEECCCCEECCGGGHHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEccCCccccccccccCCCcccCCCcccccccccccccccccccccCCCCCccCCHHHHHHHHHHHHHHHHHHHH
Confidence 78899999741 23 57888887654
Q ss_pred CCCCeEeeccCC---------CceEEEeccccceecc
Q psy18231 94 PHCNGVDLNCGC---------PQRWAIKEGYGCALLS 121 (540)
Q Consensus 94 ~~~~~id~~~gc---------~~~~~~~~g~g~~l~~ 121 (540)
.+.|.|++|.+| |........+|..+..
T Consensus 178 aGfDgVEIh~a~GYLl~QFlsp~~N~R~D~yGGslen 214 (377)
T 2r14_A 178 AGFDMVEVHAANACLPNQFLATGTNRRTDQYGGSIEN 214 (377)
T ss_dssp HTCSEEEEEECTTCHHHHHHSTTTCCCCSTTSSSHHH
T ss_pred cCCCEEEEcCcccchHHhccCCccccCCCccCcchhh
Confidence 499999999998 5544444455555544
|
| >1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 | Back alignment and structure |
|---|
Probab=98.33 E-value=0.001 Score=61.17 Aligned_cols=227 Identities=10% Similarity=0.032 Sum_probs=132.4
Q ss_pred EEEEeeCCCcEEEEcCCCCeeEEEeecCCcceeEEEEeeCCCeE-EEeeCCCeEEEEEcCC----CceeEeccccCCcee
Q psy18231 178 YCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQI-ASGASDKSVILWEVTT----GQPVRRWREHASKVT 252 (540)
Q Consensus 178 ~lat~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l-~s~s~dg~i~iwd~~~----~~~~~~~~~h~~~v~ 252 (540)
+|+.+. ...|+..|+.+.+....+. .......++|++++..| ++-..++.|..+++.. ......+...-....
T Consensus 3 ~ll~~~-~~~I~~i~~~~~~~~~~~~-~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~ 80 (316)
T 1ijq_A 3 YLFFTN-RHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPD 80 (316)
T ss_dssp EEEEEC-BSSEEEEETTSCCCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCC
T ss_pred EEEEEC-CCeEEEEECCCcceEehhc-CCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcC
Confidence 344443 3578899988776655554 34567899999866555 4555568999999875 222222322234567
Q ss_pred EEEECCCC-CEEEEecCCCcEEEEEecCCCCCCcchhhhhHhhhhcCCceeEEEEeecccccccccCceeeEEEeeeecc
Q psy18231 253 CVKFNEDS-SVVISGSQDNTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKY 331 (540)
Q Consensus 253 ~~~~~~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (540)
.+++.+.+ ++.++-...+.|.+.++.......+
T Consensus 81 glavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~---------------------------------------------- 114 (316)
T 1ijq_A 81 GLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTL---------------------------------------------- 114 (316)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTSSSEEEE----------------------------------------------
T ss_pred EEEEeecCCeEEEEECCCCEEEEEeCCCCceEEE----------------------------------------------
Confidence 88988644 4445556677888888754321000
Q ss_pred cccceeeeeeccceeEEEeecccceecccccccccccchhhhhhcccccEEEEEecC--CeeEeeeC-C-CeEEEEeCCC
Q psy18231 332 LNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEARDSITSVHVSD--HEILTASL-D-CRIRRYDIRT 407 (540)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~--~~l~~~~~-d-g~i~iwd~~~ 407 (540)
..........++++| ..++.+.. . +.|...+++.
T Consensus 115 ------------------------------------------~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG 152 (316)
T 1ijq_A 115 ------------------------------------------FRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNG 152 (316)
T ss_dssp ------------------------------------------EECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTS
T ss_pred ------------------------------------------EECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCC
Confidence 000112346777776 44444443 2 6788888764
Q ss_pred CceEEeee---CCceEEEEEecCCcEEEee-cCCCeEEEEeccccchhhhhcc-C--cCCcceEEEEecCCCCeEEEeeC
Q psy18231 408 GNLVTDYV---GEPIVDACFTRDCQCILTC-STDECLRLFDKATGELLEEYKG-H--KSGDFRIECCLDSKDSQIFCGSS 480 (540)
Q Consensus 408 ~~~~~~~~---~~~i~~~~~sp~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~-~--~~~v~~~~~~~s~~~~~l~s~s~ 480 (540)
. ....+. ......++++|++..|+.+ +..+.|..+|+.. .....+.. . ......+ ++. .+..+++-..
T Consensus 153 ~-~~~~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg-~~~~~~~~~~~~~~~P~gi--av~-~~~ly~~d~~ 227 (316)
T 1ijq_A 153 V-DIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNG-GNRKTILEDEKRLAHPFSL--AVF-EDKVFWTDII 227 (316)
T ss_dssp C-CEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS-CSCEEEEECTTTTSSEEEE--EEE-TTEEEEEETT
T ss_pred C-CeEEEEECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCC-CceEEEeecCCccCCcEEE--EEE-CCEEEEEECC
Confidence 3 333222 2467899999876655544 4567999999864 22222211 1 1112334 453 3555556667
Q ss_pred CCcEEEEEecCCcceeEEE
Q psy18231 481 DGKIYKWQLVDSSQISTLI 499 (540)
Q Consensus 481 dg~i~iwd~~~~~~~~~~~ 499 (540)
.+.|..++..+++.+..+.
T Consensus 228 ~~~V~~~~~~~g~~~~~i~ 246 (316)
T 1ijq_A 228 NEAIFSANRLTGSDVNLLA 246 (316)
T ss_dssp TTEEEEEETTTCCCCEEEE
T ss_pred CCeEEEEeCCCCcceEEEe
Confidence 7889999987887766664
|
| >2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major} | Back alignment and structure |
|---|
Probab=98.31 E-value=4.2e-05 Score=79.65 Aligned_cols=70 Identities=10% Similarity=0.106 Sum_probs=47.3
Q ss_pred ceeEEEEe-eCCCeEEEeeC-C----CeEEEEEcCCC-ceeEe-ccccCCceeEEEECCCCCEEEEecCCC-----cEEE
Q psy18231 208 EVNDATAA-CDSSQIASGAS-D----KSVILWEVTTG-QPVRR-WREHASKVTCVKFNEDSSVVISGSQDN-----TVMM 274 (540)
Q Consensus 208 ~v~~l~~s-p~~~~l~s~s~-d----g~i~iwd~~~~-~~~~~-~~~h~~~v~~~~~~~~~~~l~s~~~dg-----~i~i 274 (540)
.+...+|| |||++||-+.. + .+|+++|+.++ +.+.. +. .....+.|+||++.|+....|. .|..
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~---~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~ 251 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVS---GTNGEIVWGPDHTSLFYVTKDETLRENKVWR 251 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEE---EECSCCEECSSTTEEEEEEECTTCCEEEEEE
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCcccc---CceeeEEEecCCCEEEEEEECCCCCCCEEEE
Confidence 67889999 99998885433 2 35999999998 63221 11 1235688999998887776542 4555
Q ss_pred EEecCC
Q psy18231 275 WDVKSR 280 (540)
Q Consensus 275 wd~~~~ 280 (540)
+++.++
T Consensus 252 ~~lgt~ 257 (751)
T 2xe4_A 252 HVMGKL 257 (751)
T ss_dssp EETTSC
T ss_pred EECCCC
Confidence 665443
|
| >3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L | Back alignment and structure |
|---|
Probab=98.30 E-value=0.0015 Score=62.26 Aligned_cols=231 Identities=10% Similarity=0.042 Sum_probs=135.6
Q ss_pred EEEEeeCCCcEEEEcCCCCeeEEEeecCCcceeEEEEeeCCCeEE-EeeCCCeEEEEEcCCC----ceeEeccccCCcee
Q psy18231 178 YCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIA-SGASDKSVILWEVTTG----QPVRRWREHASKVT 252 (540)
Q Consensus 178 ~lat~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~-s~s~dg~i~iwd~~~~----~~~~~~~~h~~~v~ 252 (540)
+|+.+. ...|+..++........+. ....+..++|++.+..|. +-...+.|..+++... .....+........
T Consensus 85 ~ll~~~-~~~I~~i~l~~~~~~~~~~-~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~ 162 (400)
T 3p5b_L 85 YLFFTN-RHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPD 162 (400)
T ss_dssp EEEEEE-TTEEEEECTTSCSCEEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEE
T ss_pred eeEEec-cceeEEEccCCcceeEecc-ccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcc
Confidence 454444 4788899987665544443 456788999998655555 4455688999988652 22233333445678
Q ss_pred EEEECC-CCCEEEEecCCCcEEEEEecCCCCCCcchhhhhHhhhhcCCceeEEEEeecccccccccCceeeEEEeeeecc
Q psy18231 253 CVKFNE-DSSVVISGSQDNTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKY 331 (540)
Q Consensus 253 ~~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (540)
.+++.+ .+++.++-...+.|.+.+++......
T Consensus 163 glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~----------------------------------------------- 195 (400)
T 3p5b_L 163 GLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKT----------------------------------------------- 195 (400)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEECTTTCSEEE-----------------------------------------------
T ss_pred cEEEEecCCceEEEECCCCeEEEEeCCCCceEE-----------------------------------------------
Confidence 899987 45555555566778877765433100
Q ss_pred cccceeeeeeccceeEEEeecccceecccccccccccchhhhhhcccccEEEEEecC--CeeEeeeC--CCeEEEEeCCC
Q psy18231 332 LNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEARDSITSVHVSD--HEILTASL--DCRIRRYDIRT 407 (540)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~--~~l~~~~~--dg~i~iwd~~~ 407 (540)
.....-.....|+++| ..|+.+.. .+.|...+++.
T Consensus 196 -----------------------------------------l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG 234 (400)
T 3p5b_L 196 -----------------------------------------LFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNG 234 (400)
T ss_dssp -----------------------------------------EEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTS
T ss_pred -----------------------------------------EEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCC
Confidence 0001112346777776 44544432 36788888875
Q ss_pred CceEEeeeC--CceEEEEEecCCcEEEee-cCCCeEEEEeccccchhhhhccCcCCcceEEEEecCCCCeEEEeeCCCcE
Q psy18231 408 GNLVTDYVG--EPIVDACFTRDCQCILTC-STDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKI 484 (540)
Q Consensus 408 ~~~~~~~~~--~~i~~~~~sp~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~s~~~~~l~s~s~dg~i 484 (540)
......... .....++++|++..|+.+ ...+.|..+|+...............-....+++. .+..+++-...+.|
T Consensus 235 ~~~~~~~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~-~~~lywtd~~~~~V 313 (400)
T 3p5b_L 235 VDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAI 313 (400)
T ss_dssp CSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEEE-TTEEEEEESSSCSE
T ss_pred CccEEEEECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEEe-CCEEEEecCCCCeE
Confidence 443332222 567899999876666555 45678999998643322222211111112222442 33455566677889
Q ss_pred EEEEecCCcceeEEE
Q psy18231 485 YKWQLVDSSQISTLI 499 (540)
Q Consensus 485 ~iwd~~~~~~~~~~~ 499 (540)
..+|..+++.+..+.
T Consensus 314 ~~~~~~~G~~~~~i~ 328 (400)
T 3p5b_L 314 FSANRLTGSDVNLLA 328 (400)
T ss_dssp EEEESSSCCCCEEEE
T ss_pred EEEEcCCCCceEEEe
Confidence 999988888777776
|
| >1vyr_A Pentaerythritol tetranitrate reductase; oxidoreductase, flavoenzyme, explosive degradation, steroid binding; HET: FMN TNF; 0.9A {Enterobacter cloacae} SCOP: c.1.4.1 PDB: 1gvq_A* 1gvr_A* 1gvs_A* 1h50_A* 1h51_A* 1h60_A* 1h61_A* 1h62_A* 1h63_A* 1gvo_A* 2aba_A* 3f03_K* 3kft_A* 3p7y_A* 3p80_A* 3p81_A* 3p62_A* 3p8i_A* 2abb_A* 3p67_A* ... | Back alignment and structure |
|---|
Probab=98.29 E-value=9.2e-07 Score=82.24 Aligned_cols=96 Identities=14% Similarity=0.076 Sum_probs=70.8
Q ss_pred cceecCCceEEeccCCC---------CCHHHHHHHHHcCCCEEEeeeeecccccccc--------hhh---ccccc--cC
Q psy18231 10 RSTLLKNLKHCDSTLWT---------SKLNFRQLVRSHNVDLCFTPMIIADSFIKSS--------KAR---NNEFS--TS 67 (540)
Q Consensus 10 ~~~~~~~~~~~ap~~~~---------~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~---~~~~~--~~ 67 (540)
+.+.+++|++||||++. |+..+|..+++.|+++++||++.....-+.. ... .+.+. .+
T Consensus 12 g~~~l~NRiv~aPm~~~~a~~~~g~~t~~~~~~y~~rAg~GLiite~~~v~~~g~~~~~~~gi~~d~~i~~~~~l~~~vh 91 (364)
T 1vyr_A 12 GAVTAPNRVFMAPLTRLRSIEPGDIPTPLMGEYYRQRASAGLIISEATQISAQAKGYAGAPGLHSPEQIAAWKKITAGVH 91 (364)
T ss_dssp TTEEESSSEEECCCCCCCCBTTTTBCCHHHHHHHHHTTTSSEEEEEEEESSSTTCCSTTCCBSSSHHHHHHHHHHHHHHH
T ss_pred CCEEECCccEECCCCCCcccCCCCCCCHHHHHHHHHHhcCCEEEEccccccccccCCCCCcccCCHHHHHHHHHHHHHHH
Confidence 56889999999999986 7889999999999999999998755322211 111 22221 35
Q ss_pred CCCCCEEEEEec------------------------------------------CCh------------hHHHHHHHH-h
Q psy18231 68 PEDTPLVVQFAS------------------------------------------NNH------------DDFVRATQY-V 92 (540)
Q Consensus 68 ~~~~~~~~q~~~------------------------------------------~~~------------~~~~~~~~~-~ 92 (540)
..+.++++|++. ..| ++++++|+. .
T Consensus 92 ~~g~~i~~QL~H~Gr~~~~~~~~~g~~~~apS~i~~~~~~~~~~~~g~~~~~~~~~p~~mt~~eI~~~i~~f~~aA~~a~ 171 (364)
T 1vyr_A 92 AEDGRIAVQLWHTGRISHSSIQPGGQAPVSASALNANTRTSLRDENGNAIRVDTTTPRALELDEIPGIVNDFRQAVANAR 171 (364)
T ss_dssp HTTCCEEEEEECCTTSSCGGGSGGGCCCEESSSCCCCSEEEEECTTSCEEEEECCCCEECCGGGHHHHHHHHHHHHHHHH
T ss_pred hcCCeEEEEeccCCcccCcccccCCCccccCCCcccccccccccccccccccCCCCCCcCCHHHHHHHHHHHHHHHHHHH
Confidence 667889999972 123 478888876 4
Q ss_pred cCCCCeEeeccCC
Q psy18231 93 APHCNGVDLNCGC 105 (540)
Q Consensus 93 ~~~~~~id~~~gc 105 (540)
+.+.|.|++|.+|
T Consensus 172 ~aGfDgVeih~a~ 184 (364)
T 1vyr_A 172 EAGFDLVELHSAH 184 (364)
T ss_dssp HTTCSEEEEEECT
T ss_pred HcCCCEEEEcCcc
Confidence 4599999999997
|
| >3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A* | Back alignment and structure |
|---|
Probab=98.27 E-value=0.0047 Score=62.30 Aligned_cols=383 Identities=11% Similarity=-0.001 Sum_probs=186.0
Q ss_pred hhhhhcccccceeeeeccccccee-e--eeecCeEEEEeCCCCCEEEEeeC--CCcEEEEcCCCCeeEEEeecCCcceeE
Q psy18231 137 TRILYELPKEWSIRVYRPLTVNRE-L--FVLSGLMHTRFPVDGSYCLTCGS--DKKIKLWNPYRNLLLKTYGGHAHEVND 211 (540)
Q Consensus 137 ~~~~~~~~~~~~i~~~~~~~~~~~-~--~h~~~v~~v~~spdg~~lat~~~--dg~i~iwd~~~~~~~~~~~~h~~~v~~ 211 (540)
..+++.-.....|.+.+.....+. + ........|++.|.+.+|..... .+.|...++............-.....
T Consensus 96 ~~ly~~d~~~~~I~v~~~dG~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~~l~~~~~~~P~G 175 (619)
T 3s94_A 96 EKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNG 175 (619)
T ss_dssp TEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSSEEE
T ss_pred CEEEEEeCCCCEEEEEECCCCCEEEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCceEEEEeCCCCCCcE
Confidence 344444455556666665443221 1 23345778999997666655442 456666665433222222233455788
Q ss_pred EEEeeCCCeEEEe-eCCCeEEEEEcCCCceeEeccccCCceeEEEECCCCCEEEEecCCCcEEEEEecCCCCCCcchhhh
Q psy18231 212 ATAACDSSQIASG-ASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQVRCL 290 (540)
Q Consensus 212 l~~sp~~~~l~s~-s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~ 290 (540)
+++.+++..|..+ ...+.|...|+..........+.......+++.++ ...++-...+.|...|..+++........
T Consensus 176 lald~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~gi~~~~~-~ly~td~~~~~V~~~d~~tg~~~~~i~~~- 253 (619)
T 3s94_A 176 LTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFED-ILYWTDWSTHSILACNKYTGEGLREIHSD- 253 (619)
T ss_dssp EEEETTTTEEEEEETTTCCEEEESSSCCEEC---------CCCEEESSS-EEEEECTTTCSEEEEESSSCCCCEECCSC-
T ss_pred EEEEccCCEEEEEeCCCCeEEEecCCCCccEEEEeCCCCCceEEEEeCC-EEEEecCCCCEEEEEECCCCcccEEEecC-
Confidence 9999876665555 45678888888543322222222233456777655 45555556778988888776532111000
Q ss_pred hHhhhhcCCceeEEEEeeccccc---c---cccCceeeE-E-------Eeeeecccccce-eee-eeccceeEEEeeccc
Q psy18231 291 NEALKEARDSITSVHSLVKSTKN---H---LSNGLLTKL-V-------FAFRCKYLNGLL-SGV-LMSTQHLMVLLDFLG 354 (540)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~---~---~~~~~~~~~-~-------~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~ 354 (540)
......+......... . ...+..... . +...|....... ... .......+.++...+
T Consensus 254 -------~~~p~~i~v~~~~~qp~~~n~C~~~ng~Cs~lCl~~~~~~~~~C~C~~g~~l~~d~~~C~~~~~~~Ll~~~~~ 326 (619)
T 3s94_A 254 -------IFSPMDIHAFSQQRQPNATNPCGIDNGGCSHLCLMSPVKPFYQCACPTGVKLLENGKTCKDGATELLLLARRT 326 (619)
T ss_dssp -------CCCCSEEEECCGGGSCCCCCTTTTTGGGCSSEEEECSSTTSEEEECCTTCCBCTTSSCBCSSCSEEEEEEESS
T ss_pred -------CCCCcEEEEEccccCCCccccccCCCCcccceEECCCCCCCceEeCCchheecccCcccCCCCceEEEEEccc
Confidence 0111122211110000 0 000000000 0 111111100000 000 000111222222222
Q ss_pred ceecccccccccccchhhhhhcccccEEEEEecC--CeeEe-eeCCCeEEEEeCCCCceEEeeeC--CceEEEEEec-CC
Q psy18231 355 STQIGDVTPISIHNSCFQALKEARDSITSVHVSD--HEILT-ASLDCRIRRYDIRTGNLVTDYVG--EPIVDACFTR-DC 428 (540)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~--~~l~~-~~~dg~i~iwd~~~~~~~~~~~~--~~i~~~~~sp-~~ 428 (540)
......+....... ....+ ..-..+.++++++ +.|.. -...+.|+.++++.......+.. .....+++.+ .+
T Consensus 327 ~i~~i~l~~~~~~~-~~~~~-~~l~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~~~v~~~~~~~p~GlAvD~~~~ 404 (619)
T 3s94_A 327 DLRRISLDTPDFTD-IVLQL-EDIRHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVVTAQIAHPDGIAVDWVAR 404 (619)
T ss_dssp CEEEEESSSTTCCC-EECCC-SCCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTT
T ss_pred ceEEEecCCCccce-eEEec-cccCccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCccEEEEECCCCCcCceEEecccC
Confidence 11111111100000 00001 1123467888886 44444 44578899999876443333322 4677899987 45
Q ss_pred cEEEeecCCCeEEEEeccccchhhhhc-cCcCCcceEEEEecCCCCeEEEeeC--CCcEEEEEecCCcceeEEEecccce
Q psy18231 429 QCILTCSTDECLRLFDKATGELLEEYK-GHKSGDFRIECCLDSKDSQIFCGSS--DGKIYKWQLVDSSQISTLIHSVGKA 505 (540)
Q Consensus 429 ~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~v~~~~~~~s~~~~~l~s~s~--dg~i~iwd~~~~~~~~~~~~~~~~~ 505 (540)
++.++-+..+.|.+.++.... ...+. ..-.....+ ++.|...+|+.... .+.|...++ +|+....+.. ..-.
T Consensus 405 ~lY~tD~~~~~I~v~~~~G~~-~~~l~~~~l~~P~~i--avdp~~G~ly~tD~g~~~~I~r~~~-dG~~~~~l~~-~~l~ 479 (619)
T 3s94_A 405 NLYWTDTGTDRIEVTRLNGTM-RKILISEDLEEPRAI--VLDPMVGYMYWTDWGEIPKIERAAL-DGSDRVVLVN-TSLG 479 (619)
T ss_dssp EEEEEETTTTEEEEEETTSCS-CEEEECTTCCSEEEE--EEETTTTEEEEEECSSSCEEEEEET-TSCSCEEEEC-SSCS
T ss_pred cEEEEeCCCCcEEEEeCCCCe-EEEEEECCCCCeeeE--EEEcCCCcEEEecCCCCCEEEEEcc-CCCccEEEEe-CCCC
Confidence 566666678899999886432 22222 111223344 78887555555543 355666664 4554444431 3345
Q ss_pred eeeEEEEcCCCcEEEeec--CCeeEEEEcccc
Q psy18231 506 VVNSLCSHPTRKHIMSAC--GNNVKLWTAEED 535 (540)
Q Consensus 506 ~v~~l~~s~d~~~l~s~~--d~~i~iw~~~~~ 535 (540)
..+.|++++++..|..+. .+.|...+++..
T Consensus 480 ~P~GlalD~~~~~LY~aD~~~~~I~~~~~dG~ 511 (619)
T 3s94_A 480 WPNGLALDYDEGKIYWGDAKTDKIEVMNTDGT 511 (619)
T ss_dssp CEEEEEEETTTTEEEEEETTTTEEEEEESSSC
T ss_pred CCeeeEEcccCCEEEEEECCCCEEEEEecCCC
Confidence 688999999877777776 567888877543
|
| >3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.26 E-value=0.00047 Score=66.35 Aligned_cols=235 Identities=9% Similarity=0.015 Sum_probs=131.4
Q ss_pred ceeEEEEee-CCCeEEEeeCCCeEEEEEcCCCceeEeccccCCceeEEEECCCCCEEEEecCC-C---cEEEEEecCCCC
Q psy18231 208 EVNDATAAC-DSSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQD-N---TVMMWDVKSRSH 282 (540)
Q Consensus 208 ~v~~l~~sp-~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d-g---~i~iwd~~~~~~ 282 (540)
....++++| ++..|..+...+.|+.+|+..+...... ........++|++++++|+.+... + ...+|-...+..
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~-~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~g~~ 216 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVY-SGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRESGF 216 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEE-CCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGGGTS
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEe-cCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCCCce
Confidence 457889997 4555666655588999998776544333 345668899999999966665542 2 112222222210
Q ss_pred CCcchhhhhHhhhhcCCceeEEEEeecccccccccCceeeEEEeeeecccccceeeeeeccceeEEEeecccceeccccc
Q psy18231 283 HPIQVRCLNEALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVT 362 (540)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (540)
....
T Consensus 217 ~~~~---------------------------------------------------------------------------- 220 (430)
T 3tc9_A 217 KVIT---------------------------------------------------------------------------- 220 (430)
T ss_dssp CSEE----------------------------------------------------------------------------
T ss_pred eeee----------------------------------------------------------------------------
Confidence 0000
Q ss_pred ccccccchhhhhhcccccEEEEEecC--Ce-eEeeeCCCeEEEEeCCCCceEEeee--C-CceEEEEEecCCcE-EEeec
Q psy18231 363 PISIHNSCFQALKEARDSITSVHVSD--HE-ILTASLDCRIRRYDIRTGNLVTDYV--G-EPIVDACFTRDCQC-ILTCS 435 (540)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~v~~l~~~~--~~-l~~~~~dg~i~iwd~~~~~~~~~~~--~-~~i~~~~~sp~~~~-l~~~~ 435 (540)
.+. .......++++| .. +++-..++.|..++...+....... . .....++|+|+|++ +++-.
T Consensus 221 ----------~l~-~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~ 289 (430)
T 3tc9_A 221 ----------ELT-KGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVV 289 (430)
T ss_dssp ----------EEE-ECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEET
T ss_pred ----------eec-cCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEEC
Confidence 000 011234556666 33 4444567889999998765422222 2 34778999999995 45555
Q ss_pred CCCeEEEEeccc--cch--hhhhccC------c---------CCcc-eEEEEe--------cCCCCeEEEeeCCCcEEEE
Q psy18231 436 TDECLRLFDKAT--GEL--LEEYKGH------K---------SGDF-RIECCL--------DSKDSQIFCGSSDGKIYKW 487 (540)
Q Consensus 436 ~dg~i~i~d~~~--~~~--~~~~~~~------~---------~~v~-~~~~~~--------s~~~~~l~s~s~dg~i~iw 487 (540)
..+.|..++... ++. +..+.+. . ..-. .+ +. .++|.+.++=...+.|+.+
T Consensus 290 ~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv--~v~~~~y~~~D~~g~lyvaD~~n~~I~~i 367 (430)
T 3tc9_A 290 NQHYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGT--FVKNPAYKGSSDEYDFYFCDRENHCIRIL 367 (430)
T ss_dssp TTTEEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEE--EEECGGGTTSSCCEEEEEEEGGGTEEEEE
T ss_pred CCCEEEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceE--EEccccccccCCCCeEEEEECCCcEEEEE
Confidence 678899987652 211 1111111 0 0001 12 23 2345555555566788888
Q ss_pred EecCCcceeEEEec-----c----------cceeeeEEEEcCC-CcEEEeec-CCeeEEEEcc
Q psy18231 488 QLVDSSQISTLIHS-----V----------GKAVVNSLCSHPT-RKHIMSAC-GNNVKLWTAE 533 (540)
Q Consensus 488 d~~~~~~~~~~~~~-----~----------~~~~v~~l~~s~d-~~~l~s~~-d~~i~iw~~~ 533 (540)
+ .+++........ + .-.....++++|+ +.++++-. .+.|+..+++
T Consensus 368 ~-~~G~v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 429 (430)
T 3tc9_A 368 T-PQGRVTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKIGYE 429 (430)
T ss_dssp C-TTSEEEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred C-CCCcEEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEEccC
Confidence 8 456433333210 0 0124789999995 55555544 7889888875
|
| >1z41_A YQJM, probable NADH-dependent flavin oxidoreductase YQJ; FMN, beta-alpha-barrel; HET: FMN; 1.30A {Bacillus subtilis} SCOP: c.1.4.1 PDB: 1z42_A* 1z44_A* 1z48_A* | Back alignment and structure |
|---|
Probab=98.26 E-value=9.6e-07 Score=81.62 Aligned_cols=95 Identities=11% Similarity=0.105 Sum_probs=65.1
Q ss_pred cceecCCceEEeccCCCCC-----HH-------HHHHHHHcCCCEEEeeeeecccccccchh--------h---ccccc-
Q psy18231 10 RSTLLKNLKHCDSTLWTSK-----LN-------FRQLVRSHNVDLCFTPMIIADSFIKSSKA--------R---NNEFS- 65 (540)
Q Consensus 10 ~~~~~~~~~~~ap~~~~~~-----~~-------~r~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~---~~~~~- 65 (540)
+++.+++|+++|||++.+. .| ||+.+ +.|+++++|||+.....-+..+. . .+.+.
T Consensus 12 g~~~l~NRiv~aPm~~~~~~~~~g~~~~~~~~~y~~rA-~gG~gliite~~~v~~~g~~~~~~~~i~~d~~~~~~~~~~~ 90 (338)
T 1z41_A 12 KDMTLKNRIVMSPMCMYSSHEKDGKLTPFHMAHYISRA-IGQVGLIIVEASAVNPQGRITDQDLGIWSDEHIEGFAKLTE 90 (338)
T ss_dssp TTEEESSSEEECCCCCCCCTTSSSCCCHHHHHHHHHHH-HTTCSEEEEEEEESSGGGCSSTTSCBCSSTHHHHHHHHHHH
T ss_pred CCEEEcCccEECCcCCCcCCCCCCCCCHHHHHHHHHHH-cCCCCEEEeCCeeccccccCCCCCcccCCHHHHHHHHHHHH
Confidence 5788999999999999864 45 44443 24899999999866432221111 1 11111
Q ss_pred -cCCCCCCEEEEEecC-----------------------Ch------------hHHHHHHHHh-cCCCCeEeeccCC
Q psy18231 66 -TSPEDTPLVVQFASN-----------------------NH------------DDFVRATQYV-APHCNGVDLNCGC 105 (540)
Q Consensus 66 -~~~~~~~~~~q~~~~-----------------------~~------------~~~~~~~~~~-~~~~~~id~~~gc 105 (540)
.++.+.++++|++.. .| ++++++|+.. +.+.|.|++|++|
T Consensus 91 ~vh~~g~~i~~QL~h~Gr~~~~~~~~~~pS~~~~~~~~~~p~~mt~~eI~~~i~~~~~aA~~a~~aGfDgVeih~~~ 167 (338)
T 1z41_A 91 QVKEQGSKIGIQLAHAGRKAELEGDIFAPSAIAFDEQSATPVEMSAEKVKETVQEFKQAAARAKEAGFDVIEIHAAH 167 (338)
T ss_dssp HHHHTTCEEEEEEECCGGGCCCSSCCEESSSCCSSTTSCCCEECCHHHHHHHHHHHHHHHHHHHHTTCSEEEEEECT
T ss_pred HHHhcCCEEEEEecCCCcccCCCCCCcCCCCCCCCCCCCCCccCCHHHHHHHHHHHHHHHHHHHHcCCCEEEecccc
Confidence 246678999999853 33 4677888764 4599999999997
|
| >3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.24 E-value=0.0011 Score=61.88 Aligned_cols=203 Identities=6% Similarity=-0.060 Sum_probs=124.3
Q ss_pred ecCeEEEEeCCCCCEEE-EeeCCCcEEEEcCCCCeeEEEeecCCcceeEEEEeeCC-CeEEEeeCCCeEEEEEcCCCcee
Q psy18231 164 LSGLMHTRFPVDGSYCL-TCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDS-SQIASGASDKSVILWEVTTGQPV 241 (540)
Q Consensus 164 ~~~v~~v~~spdg~~la-t~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~-~~l~s~s~dg~i~iwd~~~~~~~ 241 (540)
......++|++....|. +-...+.|..+++........+.........+++.+.+ +++++-...+.|.+.++......
T Consensus 72 ~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~ 151 (349)
T 3v64_C 72 LENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRK 151 (349)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCE
T ss_pred CCceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceE
Confidence 34578999998666665 44457889999987665444333333456789998754 44556666789999998654433
Q ss_pred EeccccCCceeEEEECCCCCEEEEec-CC-CcEEEEEecCCCCCCcchhhhhHhhhhcCCceeEEEEeecccccccccCc
Q psy18231 242 RRWREHASKVTCVKFNEDSSVVISGS-QD-NTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHLSNGL 319 (540)
Q Consensus 242 ~~~~~h~~~v~~~~~~~~~~~l~s~~-~d-g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (540)
..+...-.....++++|.+..|+... .. +.|...++.......
T Consensus 152 ~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~----------------------------------- 196 (349)
T 3v64_C 152 VLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRI----------------------------------- 196 (349)
T ss_dssp EEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEE-----------------------------------
T ss_pred EEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCcEE-----------------------------------
Confidence 33333445678999998655554443 33 567766665432100
Q ss_pred eeeEEEeeeecccccceeeeeeccceeEEEeecccceecccccccccccchhhhhhcccccEEEEEecC--Cee-EeeeC
Q psy18231 320 LTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEARDSITSVHVSD--HEI-LTASL 396 (540)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~--~~l-~~~~~ 396 (540)
.....-.....+++++ +.| ++-+.
T Consensus 197 -----------------------------------------------------~~~~~~~~PnGla~d~~~~~lY~aD~~ 223 (349)
T 3v64_C 197 -----------------------------------------------------IADTHLFWPNGLTIDYAGRRMYWVDAK 223 (349)
T ss_dssp -----------------------------------------------------SCCSSCSCEEEEEEETTTTEEEEEETT
T ss_pred -----------------------------------------------------EEECCCCCcceEEEeCCCCEEEEEECC
Confidence 0001122356788875 444 44455
Q ss_pred CCeEEEEeCCCCceEEeee--CCceEEEEEecCCcEEEeecCCCeEEEEeccccchhhhhc
Q psy18231 397 DCRIRRYDIRTGNLVTDYV--GEPIVDACFTRDCQCILTCSTDECLRLFDKATGELLEEYK 455 (540)
Q Consensus 397 dg~i~iwd~~~~~~~~~~~--~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~ 455 (540)
.+.|..+|++.......+. ......+++ .++.++++-...+.|..+|..+++.+..+.
T Consensus 224 ~~~I~~~~~dG~~~~~~~~~~~~~P~giav-~~~~ly~td~~~~~V~~~~~~~G~~~~~i~ 283 (349)
T 3v64_C 224 HHVIERANLDGSHRKAVISQGLPHPFAITV-FEDSLYWTDWHTKSINSANKFTGKNQEIIR 283 (349)
T ss_dssp TTEEEEEETTSCSCEEEECSSCSSEEEEEE-ETTEEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred CCEEEEEeCCCCceEEEEeCCCCCceEEEE-ECCEEEEecCCCCeEEEEEccCCCccEEec
Confidence 6789999987543322222 235567777 456666666678889888876776655554
|
| >3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.23 E-value=0.00075 Score=63.98 Aligned_cols=204 Identities=6% Similarity=-0.061 Sum_probs=124.8
Q ss_pred ecCeEEEEeCCCCCEEE-EeeCCCcEEEEcCCCCeeEEEeecCCcceeEEEEeeCCC-eEEEeeCCCeEEEEEcCCCcee
Q psy18231 164 LSGLMHTRFPVDGSYCL-TCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSS-QIASGASDKSVILWEVTTGQPV 241 (540)
Q Consensus 164 ~~~v~~v~~spdg~~la-t~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~-~l~s~s~dg~i~iwd~~~~~~~ 241 (540)
......++|++.+..|+ +-...+.|..+++........+.........+++.+.+. ++++-...+.|.+.++......
T Consensus 115 ~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~ 194 (386)
T 3v65_B 115 LENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRK 194 (386)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCE
T ss_pred CCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceE
Confidence 45688999998665555 445578899999876654443433334567789987544 4555566788998888654433
Q ss_pred EeccccCCceeEEEECCCCCEEEEecC-C-CcEEEEEecCCCCCCcchhhhhHhhhhcCCceeEEEEeecccccccccCc
Q psy18231 242 RRWREHASKVTCVKFNEDSSVVISGSQ-D-NTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHLSNGL 319 (540)
Q Consensus 242 ~~~~~h~~~v~~~~~~~~~~~l~s~~~-d-g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (540)
..+.........+++.|.+..|+.+.. . +.|...++.......
T Consensus 195 ~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~----------------------------------- 239 (386)
T 3v65_B 195 VLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRI----------------------------------- 239 (386)
T ss_dssp EEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEE-----------------------------------
T ss_pred EeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEE-----------------------------------
Confidence 333334456789999986665554433 3 566666654332100
Q ss_pred eeeEEEeeeecccccceeeeeeccceeEEEeecccceecccccccccccchhhhhhcccccEEEEEecC--Cee-EeeeC
Q psy18231 320 LTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEARDSITSVHVSD--HEI-LTASL 396 (540)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~--~~l-~~~~~ 396 (540)
.....-.....|++++ +.| ++-+.
T Consensus 240 -----------------------------------------------------~~~~~~~~PnGlavd~~~~~lY~aD~~ 266 (386)
T 3v65_B 240 -----------------------------------------------------IADTHLFWPNGLTIDYAGRRMYWVDAK 266 (386)
T ss_dssp -----------------------------------------------------EECSSCSCEEEEEEEGGGTEEEEEETT
T ss_pred -----------------------------------------------------EEECCCCCeeeEEEeCCCCEEEEEECC
Confidence 0000112346778875 444 44456
Q ss_pred CCeEEEEeCCCCceEEeee--CCceEEEEEecCCcEEEeecCCCeEEEEeccccchhhhhcc
Q psy18231 397 DCRIRRYDIRTGNLVTDYV--GEPIVDACFTRDCQCILTCSTDECLRLFDKATGELLEEYKG 456 (540)
Q Consensus 397 dg~i~iwd~~~~~~~~~~~--~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~ 456 (540)
.+.|..+|++.......+. ......+++ ..+.++++-...+.|..+|..+++.+..+..
T Consensus 267 ~~~I~~~d~dG~~~~~~~~~~~~~P~giav-~~~~ly~td~~~~~V~~~~~~~G~~~~~i~~ 327 (386)
T 3v65_B 267 HHVIERANLDGSHRKAVISQGLPHPFAITV-FEDSLYWTDWHTKSINSANKFTGKNQEIIRN 327 (386)
T ss_dssp TTEEEEECTTSCSCEEEECSSCSSEEEEEE-ETTEEEEEETTTTEEEEEETTTCCSCEEEEC
T ss_pred CCEEEEEeCCCCeeEEEEECCCCCceEEEE-ECCEEEEeeCCCCeEEEEECCCCcceEEEcc
Confidence 6789999987543332232 235667777 4556667777788899998777776655543
|
| >3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.18 E-value=0.0014 Score=57.36 Aligned_cols=80 Identities=14% Similarity=0.247 Sum_probs=59.4
Q ss_pred EeecCCcceeEEEEeeCCCeEE-EeeCCCeEEEEEcCCCceeEeccc-cCCceeEEEECCCCCEEEEecCCCcEEEEEec
Q psy18231 201 TYGGHAHEVNDATAACDSSQIA-SGASDKSVILWEVTTGQPVRRWRE-HASKVTCVKFNEDSSVVISGSQDNTVMMWDVK 278 (540)
Q Consensus 201 ~~~~h~~~v~~l~~sp~~~~l~-s~s~dg~i~iwd~~~~~~~~~~~~-h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~ 278 (540)
.+.+-...+..++|+|++..|+ +...++.|...|.. ++.++.+.- -......+++.+++.++++.-.++.+.++++.
T Consensus 21 ~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~ 99 (255)
T 3qqz_A 21 EIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLT 99 (255)
T ss_dssp ECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEEC
T ss_pred ECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcC
Confidence 4555567899999999766555 56778899999987 887777632 23567889999888776776667788888876
Q ss_pred CCC
Q psy18231 279 SRS 281 (540)
Q Consensus 279 ~~~ 281 (540)
...
T Consensus 100 ~~~ 102 (255)
T 3qqz_A 100 PNS 102 (255)
T ss_dssp TTC
T ss_pred CCC
Confidence 543
|
| >2gou_A Oxidoreductase, FMN-binding; OLD yeallow enzyme, flavoenzyme; HET: BOG FMN PE4; 1.40A {Shewanella oneidensis} PDB: 2gq8_A* 2gq9_A* 2gqa_A* | Back alignment and structure |
|---|
Probab=98.18 E-value=1.5e-06 Score=80.78 Aligned_cols=96 Identities=10% Similarity=0.059 Sum_probs=70.5
Q ss_pred cceecCCceEEeccCCCC---------CHHHHHHHHHcCCCEEEeeeeecccccccc--------hhh---ccccc--cC
Q psy18231 10 RSTLLKNLKHCDSTLWTS---------KLNFRQLVRSHNVDLCFTPMIIADSFIKSS--------KAR---NNEFS--TS 67 (540)
Q Consensus 10 ~~~~~~~~~~~ap~~~~~---------~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~---~~~~~--~~ 67 (540)
+++.|++|+++|||++.. +..+|..+++.++++++||++.....-+.. ... .+.+. .+
T Consensus 12 g~~~l~NRiv~aPm~~~~a~~~~g~~t~~~~~~y~~rA~~GLiite~~~v~~~g~~~~~~~gi~~d~~i~~~~~l~~~vh 91 (365)
T 2gou_A 12 GALTLKNRIVMPPMTRSRASQPGDVANHMMAIYYAQRASAGLIVSEGTQISPTAKGYAWTPGIYTPEQIAGWRIVTEAVH 91 (365)
T ss_dssp TTEEESSSEEECCCCCCCCBTTTTBCCHHHHHHHHTTTTSSEEEEEEEESSGGGCCSTTCCBSSSHHHHHHHHHHHHHHH
T ss_pred CCEEEcCceEECCCCCCcccCCCCCCCHHHHHHHHHHhcCCEEEECceeecccccCCCCCCccCCHHHHHHHHHHHHHHH
Confidence 578899999999999984 789999999999999999998754322211 111 22221 24
Q ss_pred CCCCCEEEEEec------------------------------------------CCh------------hHHHHHHHHh-
Q psy18231 68 PEDTPLVVQFAS------------------------------------------NNH------------DDFVRATQYV- 92 (540)
Q Consensus 68 ~~~~~~~~q~~~------------------------------------------~~~------------~~~~~~~~~~- 92 (540)
..+.++++|++. ..| ++++++|+..
T Consensus 92 ~~g~~i~~QL~H~Gr~~~~~~~~g~~~~apS~i~~~~~~~~~~~~~g~~~~~~~~~p~~mt~~eI~~~i~~f~~aA~~a~ 171 (365)
T 2gou_A 92 AKGCAIFAQLWHVGRVTHPDNIDGQQPISSSTLKAENVKVFVDNGSDEPGFVDVAVPRAMTKADIAQVIADYRQAALNAM 171 (365)
T ss_dssp HHSCEEEEEEECCTTSSCGGGTTTCCCEESSSCCCTTCEEEECCSSSSCEEEECCCCEECCHHHHHHHHHHHHHHHHHHH
T ss_pred hcCCeEEEEeecCCCcccccccCCCCccCCCCccccccccccccccccccccCCCCCCcCCHHHHHHHHHHHHHHHHHHH
Confidence 667789999973 123 5788888764
Q ss_pred cCCCCeEeeccCC
Q psy18231 93 APHCNGVDLNCGC 105 (540)
Q Consensus 93 ~~~~~~id~~~gc 105 (540)
+.+.|.|++|++|
T Consensus 172 ~aGfDgVeih~a~ 184 (365)
T 2gou_A 172 EAGFDGIELHAAN 184 (365)
T ss_dssp HTTCSEEEEECCT
T ss_pred HcCCCEEEEeccc
Confidence 4599999999998
|
| >4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.17 E-value=0.00095 Score=64.22 Aligned_cols=148 Identities=16% Similarity=0.177 Sum_probs=87.3
Q ss_pred EEEEecC--CeeE-eeeCCCeEEEEeCCCCceEEee-e-C--CceEEEEEecCCcEE-EeecCCCeEEEEecc--ccchh
Q psy18231 382 TSVHVSD--HEIL-TASLDCRIRRYDIRTGNLVTDY-V-G--EPIVDACFTRDCQCI-LTCSTDECLRLFDKA--TGELL 451 (540)
Q Consensus 382 ~~l~~~~--~~l~-~~~~dg~i~iwd~~~~~~~~~~-~-~--~~i~~~~~sp~~~~l-~~~~~dg~i~i~d~~--~~~~~ 451 (540)
..+++++ ..|. +-..++.|+.+|..++.....+ . + ..-..++|+|++++| ++-...+.|+.++.. ++...
T Consensus 231 ~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d~~~~~~~ 310 (433)
T 4hw6_A 231 KTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYNRETGKLA 310 (433)
T ss_dssp CCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTTEEEEEEBCTTTCCBC
T ss_pred CEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCEEEEEeCCCCCcccC
Confidence 3455655 3344 4446778999999877653322 1 1 223469999999854 445567889998764 23211
Q ss_pred --hhhccC---------------cCCcceEEEEe---------cCCCCeEEEeeCCCcEEEEEecCCcceeEEEecc---
Q psy18231 452 --EEYKGH---------------KSGDFRIECCL---------DSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSV--- 502 (540)
Q Consensus 452 --~~~~~~---------------~~~v~~~~~~~---------s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~--- 502 (540)
..+.+. -..-..+ ++ .++|.+.++-...+.|+.++ .++.. .++...+
T Consensus 311 ~~~~~ag~~g~~g~~dg~~~~a~~~~P~gi--av~~n~~y~~dd~~g~lyvaD~~n~~I~~~~-~~G~v-~t~~G~g~~~ 386 (433)
T 4hw6_A 311 VPYIVCGQHSSPGWVDGMGTGARLWGPNQG--IFVKNEAYAGEEDEYDFYFCDRDSHTVRVLT-PEGRV-TTYAGRGNSR 386 (433)
T ss_dssp CCEEEEECTTCCCCBCEEGGGSBCSSEEEE--EEEECGGGTTSSCCEEEEEEETTTTEEEEEC-TTSEE-EEEECCCTTC
T ss_pred cEEEEEecCCCCccCCCcccceEEcCCccE--EEEccccccccCCCCcEEEEECCCCEEEEEC-CCCCE-EEEEeCCCCC
Confidence 111111 0111223 67 66777677666778899988 35533 3332100
Q ss_pred -------------cceeeeEEEEc-CCCcEEEeec-CCeeEEEEcc
Q psy18231 503 -------------GKAVVNSLCSH-PTRKHIMSAC-GNNVKLWTAE 533 (540)
Q Consensus 503 -------------~~~~v~~l~~s-~d~~~l~s~~-d~~i~iw~~~ 533 (540)
.-.....|+++ ++|.++++=. .+.|+..+++
T Consensus 387 ~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 432 (433)
T 4hw6_A 387 EWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAPE 432 (433)
T ss_dssp SSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred ccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEecC
Confidence 01237789999 6666665555 7899988875
|
| >1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 | Back alignment and structure |
|---|
Probab=98.16 E-value=0.0028 Score=58.17 Aligned_cols=203 Identities=11% Similarity=-0.003 Sum_probs=120.5
Q ss_pred ecCeEEEEeCCCCCEEE-EeeCCCcEEEEcCCC----CeeEEEeecCCcceeEEEEeeCCC-eEEEeeCCCeEEEEEcCC
Q psy18231 164 LSGLMHTRFPVDGSYCL-TCGSDKKIKLWNPYR----NLLLKTYGGHAHEVNDATAACDSS-QIASGASDKSVILWEVTT 237 (540)
Q Consensus 164 ~~~v~~v~~spdg~~la-t~~~dg~i~iwd~~~----~~~~~~~~~h~~~v~~l~~sp~~~-~l~s~s~dg~i~iwd~~~ 237 (540)
......++|++++..|+ +-...+.|..+++.. ......+...-.....+++.+.+. +.++-..++.|.+.++..
T Consensus 29 ~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g 108 (316)
T 1ijq_A 29 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG 108 (316)
T ss_dssp CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred CCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCC
Confidence 45678999998766555 445568999999875 222222332234568899987544 455556778999999865
Q ss_pred CceeEeccccCCceeEEEECCCCCEEEEecCC--CcEEEEEecCCCCCCcchhhhhHhhhhcCCceeEEEEeeccccccc
Q psy18231 238 GQPVRRWREHASKVTCVKFNEDSSVVISGSQD--NTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHL 315 (540)
Q Consensus 238 ~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d--g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (540)
......+.........++++|.+..|+.+... +.|...++.......+
T Consensus 109 ~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~~~~~------------------------------ 158 (316)
T 1ijq_A 109 VKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSL------------------------------ 158 (316)
T ss_dssp SSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEE------------------------------
T ss_pred CceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCCeEEE------------------------------
Confidence 43333333334567899999866555544432 5666666543220000
Q ss_pred ccCceeeEEEeeeecccccceeeeeeccceeEEEeecccceecccccccccccchhhhhhcccccEEEEEecC--CeeE-
Q psy18231 316 SNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEARDSITSVHVSD--HEIL- 392 (540)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~--~~l~- 392 (540)
....-.....+++++ +.|.
T Consensus 159 ----------------------------------------------------------~~~~~~~P~gla~d~~~~~lY~ 180 (316)
T 1ijq_A 159 ----------------------------------------------------------VTENIQWPNGITLDLLSGRLYW 180 (316)
T ss_dssp ----------------------------------------------------------ECSSCSCEEEEEEETTTTEEEE
T ss_pred ----------------------------------------------------------EECCCCCceEEEEeccCCEEEE
Confidence 000112456777875 4444
Q ss_pred eeeCCCeEEEEeCCCCceEEeeeC----CceEEEEEecCCcEEEeecCCCeEEEEeccccchhhhhc
Q psy18231 393 TASLDCRIRRYDIRTGNLVTDYVG----EPIVDACFTRDCQCILTCSTDECLRLFDKATGELLEEYK 455 (540)
Q Consensus 393 ~~~~dg~i~iwd~~~~~~~~~~~~----~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~ 455 (540)
+-+..+.|..+|++.......... .....+++. .+.++++-...+.|..+|..+++.+..+.
T Consensus 181 ~D~~~~~I~~~d~dg~~~~~~~~~~~~~~~P~giav~-~~~ly~~d~~~~~V~~~~~~~g~~~~~i~ 246 (316)
T 1ijq_A 181 VDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGSDVNLLA 246 (316)
T ss_dssp EETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTEEEEEETTTCCCCEEEE
T ss_pred EECCCCeEEEEecCCCceEEEeecCCccCCcEEEEEE-CCEEEEEECCCCeEEEEeCCCCcceEEEe
Confidence 445567899999874332222221 345677775 46666677778899999987776655554
|
| >3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B | Back alignment and structure |
|---|
Probab=98.16 E-value=0.0015 Score=59.93 Aligned_cols=222 Identities=9% Similarity=0.002 Sum_probs=129.0
Q ss_pred CCcEEEEcCCCCe--eEEEeecCCcceeEEEEeeCCC-eEEEeeCCCeEEEEEcCCCcee-EeccccCCceeEEEECC-C
Q psy18231 185 DKKIKLWNPYRNL--LLKTYGGHAHEVNDATAACDSS-QIASGASDKSVILWEVTTGQPV-RRWREHASKVTCVKFNE-D 259 (540)
Q Consensus 185 dg~i~iwd~~~~~--~~~~~~~h~~~v~~l~~sp~~~-~l~s~s~dg~i~iwd~~~~~~~-~~~~~h~~~v~~~~~~~-~ 259 (540)
...|+..++.... ....+. .......++|.+.+. ++.+-...+.|..+++..+... ..+...-.....+++.+ .
T Consensus 12 ~~~I~~i~l~~~~~~~~~~~~-~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~ 90 (318)
T 3sov_A 12 RRDLRLVDATNGKENATIVVG-GLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLG 90 (318)
T ss_dssp EEEEEEEETTCTTSCCEEEEE-EEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTT
T ss_pred cCeEEEEECCCCceEEEEEec-CCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCC
Confidence 4678888887653 222222 234567899998544 4555566788999998765321 22222234567888887 4
Q ss_pred CCEEEEecCCCcEEEEEecCCCCCCcchhhhhHhhhhcCCceeEEEEeecccccccccCceeeEEEeeeecccccceeee
Q psy18231 260 SSVVISGSQDNTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGV 339 (540)
Q Consensus 260 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (540)
+++.++-...+.|.++++.......+
T Consensus 91 g~ly~~d~~~~~I~~~~~dG~~~~~l------------------------------------------------------ 116 (318)
T 3sov_A 91 EKLYWTDSETNRIEVSNLDGSLRKVL------------------------------------------------------ 116 (318)
T ss_dssp TEEEEEETTTTEEEEEETTSCSCEEE------------------------------------------------------
T ss_pred CeEEEEECCCCEEEEEECCCCcEEEE------------------------------------------------------
Confidence 45555555667888888765331000
Q ss_pred eeccceeEEEeecccceecccccccccccchhhhhhcccccEEEEEecC--CeeEeee--CCCeEEEEeCCCCceEEeee
Q psy18231 340 LMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEARDSITSVHVSD--HEILTAS--LDCRIRRYDIRTGNLVTDYV 415 (540)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~--~~l~~~~--~dg~i~iwd~~~~~~~~~~~ 415 (540)
..........++++| ..++.+. ..+.|...+++.........
T Consensus 117 ----------------------------------~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~ 162 (318)
T 3sov_A 117 ----------------------------------FWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIIN 162 (318)
T ss_dssp ----------------------------------ECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEEEEC
T ss_pred ----------------------------------EeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEEEEE
Confidence 001112345677776 4555444 25778888876433222222
Q ss_pred C--CceEEEEEecCCcEEEe-ecCCCeEEEEeccccchhhhh-ccCcCCcceEEEEecCCCCeEEEeeCCCcEEEEEecC
Q psy18231 416 G--EPIVDACFTRDCQCILT-CSTDECLRLFDKATGELLEEY-KGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVD 491 (540)
Q Consensus 416 ~--~~i~~~~~sp~~~~l~~-~~~dg~i~i~d~~~~~~~~~~-~~~~~~v~~~~~~~s~~~~~l~s~s~dg~i~iwd~~~ 491 (540)
. .....++++|++..|+. -+..+.|..+|+.... ...+ .........+ ++. .+..+.+-...+.|..++..+
T Consensus 163 ~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~-~~~~~~~~~~~P~gl--av~-~~~lywtd~~~~~V~~~~~~~ 238 (318)
T 3sov_A 163 SEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTN-RQAVVKGSLPHPFAL--TLF-EDILYWTDWSTHSILACNKYT 238 (318)
T ss_dssp SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS-CEEEECSCCSCEEEE--EEE-TTEEEEEETTTTEEEEEETTT
T ss_pred CCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCc-eEEEecCCCCCceEE--EEe-CCEEEEEecCCCeEEEEECCC
Confidence 2 45689999996555554 4557889999986432 2222 2122222334 443 334555656678899999878
Q ss_pred CcceeEEE
Q psy18231 492 SSQISTLI 499 (540)
Q Consensus 492 ~~~~~~~~ 499 (540)
++....+.
T Consensus 239 G~~~~~i~ 246 (318)
T 3sov_A 239 GEGLREIH 246 (318)
T ss_dssp CCSCEEEE
T ss_pred CCceEEEe
Confidence 88766665
|
| >2nli_A Lactate oxidase; flavoenzyme, FMN, D-lactate, oxidoreducta; HET: FMN; 1.59A {Aerococcus viridans} PDB: 2zfa_A* 2du2_A* 2e77_A* 2j6x_A* | Back alignment and structure |
|---|
Probab=98.13 E-value=3.6e-06 Score=78.26 Aligned_cols=89 Identities=8% Similarity=-0.004 Sum_probs=67.9
Q ss_pred ceecCCceEEeccC--CCCC----HHHHHHHHHcCCCEEEeeeeecccccccchhhccccccCCCCCCEEEEEec-CChh
Q psy18231 11 STLLKNLKHCDSTL--WTSK----LNFRQLVRSHNVDLCFTPMIIADSFIKSSKARNNEFSTSPEDTPLVVQFAS-NNHD 83 (540)
Q Consensus 11 ~~~~~~~~~~ap~~--~~~~----~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~-~~~~ 83 (540)
+..+++++++|||+ |+++ ++++++|+++|+.+++++|.+ ..+ +. +.....+.|+.+|+++ .+++
T Consensus 76 G~~l~~Pi~iAPma~~g~~~~~~e~~la~aa~~~G~~~~~s~~~s-~~l-e~-------v~~~~~~~~~~~QLy~~~d~~ 146 (368)
T 2nli_A 76 GHKIKAPFIMAPIAAHGLAHTTKEAGTARAVSEFGTIMSISAYSG-ATF-EE-------ISEGLNGGPRWFQIYMAKDDQ 146 (368)
T ss_dssp TEEESSSEEECCCSCGGGTCTTHHHHHHHHHHHHTCCEEECTTCS-SCH-HH-------HHHHHTTCCEEEEECCBSSHH
T ss_pred CEecCCceeecchhhccCCCcHHHHHHHHHHHHcCCCEEeechHh-HHH-HH-------HHHhCCCCCEEEEEeccCCHH
Confidence 45568899999999 8884 899999999999999999975 222 11 1111136789999988 7788
Q ss_pred HHHHHHHHhcC-CCCeEeeccCCCce
Q psy18231 84 DFVRATQYVAP-HCNGVDLNCGCPQR 108 (540)
Q Consensus 84 ~~~~~~~~~~~-~~~~id~~~gc~~~ 108 (540)
.+.+.++..++ +++.++++++||..
T Consensus 147 ~~~~~~~ra~~aG~~ai~it~d~p~~ 172 (368)
T 2nli_A 147 QNRDILDEAKSDGATAIILTADSTVS 172 (368)
T ss_dssp HHHHHHHHHHHTTCSCEEEESBCC--
T ss_pred HHHHHHHHHHHCCCCEEEEcCCCCcc
Confidence 88777776554 88999999999974
|
| >3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L | Back alignment and structure |
|---|
Probab=98.11 E-value=0.0028 Score=60.30 Aligned_cols=229 Identities=10% Similarity=-0.024 Sum_probs=134.4
Q ss_pred ceeeeecccccc--eeeeeecCeEEEEeCCCCCEEEEe-eCCCcEEEEcCCCC----eeEEEeecCCcceeEEEEee-CC
Q psy18231 147 WSIRVYRPLTVN--RELFVLSGLMHTRFPVDGSYCLTC-GSDKKIKLWNPYRN----LLLKTYGGHAHEVNDATAAC-DS 218 (540)
Q Consensus 147 ~~i~~~~~~~~~--~~~~h~~~v~~v~~spdg~~lat~-~~dg~i~iwd~~~~----~~~~~~~~h~~~v~~l~~sp-~~ 218 (540)
..|+..+..... ........+..++|++.+..|..+ ...+.|..+++... .....+.........+++.+ .+
T Consensus 92 ~~I~~i~l~~~~~~~~~~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~~ 171 (400)
T 3p5b_L 92 HEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHS 171 (400)
T ss_dssp TEEEEECTTSCSCEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEEETTTT
T ss_pred ceeEEEccCCcceeEeccccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEecCC
Confidence 445555544322 223345678899999866666544 45678888887652 22333333445678899988 45
Q ss_pred CeEEEeeCCCeEEEEEcCCCceeEeccccCCceeEEEECCCCCEEEEecC--CCcEEEEEecCCCCCCcchhhhhHhhhh
Q psy18231 219 SQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQ--DNTVMMWDVKSRSHHPIQVRCLNEALKE 296 (540)
Q Consensus 219 ~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 296 (540)
++.++-...+.|.+.+++.......+.........+++.|.+.+|+.... .+.|...++.......+
T Consensus 172 ~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~----------- 240 (400)
T 3p5b_L 172 NIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSL----------- 240 (400)
T ss_dssp EEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEE-----------
T ss_pred ceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEE-----------
Confidence 55556666789999998655444444434456789999986655554432 35677666654321000
Q ss_pred cCCceeEEEEeecccccccccCceeeEEEeeeecccccceeeeeeccceeEEEeecccceecccccccccccchhhhhhc
Q psy18231 297 ARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKE 376 (540)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (540)
...
T Consensus 241 -----------------------------------------------------------------------------~~~ 243 (400)
T 3p5b_L 241 -----------------------------------------------------------------------------VTE 243 (400)
T ss_dssp -----------------------------------------------------------------------------ECS
T ss_pred -----------------------------------------------------------------------------EEC
Confidence 001
Q ss_pred ccccEEEEEecC--CeeEee-eCCCeEEEEeCCCCceEEeeeC----CceEEEEEecCCcEEEeecCCCeEEEEeccccc
Q psy18231 377 ARDSITSVHVSD--HEILTA-SLDCRIRRYDIRTGNLVTDYVG----EPIVDACFTRDCQCILTCSTDECLRLFDKATGE 449 (540)
Q Consensus 377 ~~~~v~~l~~~~--~~l~~~-~~dg~i~iwd~~~~~~~~~~~~----~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~ 449 (540)
.-.....|++++ +.|..+ +..+.|..+|++.......... .....+++. .+.++.+-...+.|..+|..+++
T Consensus 244 ~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~-~~~lywtd~~~~~V~~~~~~~G~ 322 (400)
T 3p5b_L 244 NIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGS 322 (400)
T ss_dssp SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEEE-TTEEEEEESSSCSEEEEESSSCC
T ss_pred CCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEEe-CCEEEEecCCCCeEEEEEcCCCC
Confidence 113456778875 444444 4567899999875443332222 334566663 44566666677889999988887
Q ss_pred hhhhhccCcCCcceE
Q psy18231 450 LLEEYKGHKSGDFRI 464 (540)
Q Consensus 450 ~~~~~~~~~~~v~~~ 464 (540)
.+..+.........+
T Consensus 323 ~~~~i~~~~~~p~~i 337 (400)
T 3p5b_L 323 DVNLLAENLLSPEDM 337 (400)
T ss_dssp CCEEEECSCSCEEEE
T ss_pred ceEEEecCCCCCceE
Confidence 766665433333444
|
| >4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.11 E-value=0.00083 Score=64.64 Aligned_cols=115 Identities=6% Similarity=0.071 Sum_probs=70.2
Q ss_pred cCeEEEEeCCC--CCEEEEeeCCCcEEEEcCCCCeeEEEeecCCcceeEEEEeeCCCeEEEeeCC---Ce-EEEEEcCCC
Q psy18231 165 SGLMHTRFPVD--GSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASD---KS-VILWEVTTG 238 (540)
Q Consensus 165 ~~v~~v~~spd--g~~lat~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~d---g~-i~iwd~~~~ 238 (540)
.....++|+|+ +..|..+...+.|+.+|+.++...... ........++++++|+++++.... .. +...+...+
T Consensus 139 ~~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~-~~~~~P~giavd~dG~lyVad~~~~~~~~gv~~~~~~~~ 217 (433)
T 4hw6_A 139 DNIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKT-TNIGQCADVNFTLNGDMVVVDDQSSDTNTGIYLFTRASG 217 (433)
T ss_dssp SCCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEEC-CCCSCEEEEEECTTCCEEEEECCSCTTSEEEEEECGGGT
T ss_pred CCCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEee-cCCCCccEEEECCCCCEEEEcCCCCcccceEEEEECCCC
Confidence 45678999995 445555544489999998877765443 345568899999999955554321 12 333333222
Q ss_pred cee-EeccccCCceeEEEECC-CCCEEEEecCCCcEEEEEecCCC
Q psy18231 239 QPV-RRWREHASKVTCVKFNE-DSSVVISGSQDNTVMMWDVKSRS 281 (540)
Q Consensus 239 ~~~-~~~~~h~~~v~~~~~~~-~~~~l~s~~~dg~i~iwd~~~~~ 281 (540)
... ..+ ..-.....++++| ++.+.++-..++.|..+|..++.
T Consensus 218 ~~~~~~~-~~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~ 261 (433)
T 4hw6_A 218 FTERLSL-CNARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGT 261 (433)
T ss_dssp TCCEEEE-EECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCC
T ss_pred eeccccc-cccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCe
Confidence 110 111 1234456788999 66655555567778888876543
|
| >1icp_A OPR1, 12-oxophytodienoate reductase 1; beta-alpha-barrel, protein-FMN-PEG complex, oxidoreductase; HET: FMN 2PE; 1.90A {Solanum lycopersicum} SCOP: c.1.4.1 PDB: 1icq_A* 1ics_A* 3hgr_A* 1vji_A* 2q3r_A* | Back alignment and structure |
|---|
Probab=98.10 E-value=1.4e-06 Score=81.27 Aligned_cols=94 Identities=11% Similarity=0.041 Sum_probs=67.0
Q ss_pred cceecCCceEEeccCCCC---CHH-------HHHHHHHcCCCEEEeeeeecccccccc--------hhh---cccc--cc
Q psy18231 10 RSTLLKNLKHCDSTLWTS---KLN-------FRQLVRSHNVDLCFTPMIIADSFIKSS--------KAR---NNEF--ST 66 (540)
Q Consensus 10 ~~~~~~~~~~~ap~~~~~---~~~-------~r~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~---~~~~--~~ 66 (540)
+++.|++|+++|||++.+ +.| ||+.++ |+++++||++.....-+.. ... .+.+ ..
T Consensus 23 g~~~l~NRiv~aPm~~~~a~~g~pt~~~~~yy~~rA~--g~GLiite~~~v~~~g~~~~~~~gi~~d~~i~~~k~l~~av 100 (376)
T 1icp_A 23 GKFELCHRVVLAPLTRQRSYGYIPQPHAILHYSQRST--NGGLLIGEATVISETGIGYKDVPGIWTKEQVEAWKPIVDAV 100 (376)
T ss_dssp TTEEESCSEEECCCCCCCCGGGSCCHHHHHHHHHTCC--TTCEEECCCEECSGGGCCSTTCCBCSSHHHHHHHHHHHHHH
T ss_pred CCEEECCccEECCcCcCcCCCCCCCHHHHHHHHHhcC--CeeEEEECceeeccccccCcccCccCCHHHHHHHHHHHHHH
Confidence 568899999999999986 556 777776 7999999998765322211 111 2222 13
Q ss_pred CCCCCCEEEEEec--------------------------------------CCh------------hHHHHHHHHh-cCC
Q psy18231 67 SPEDTPLVVQFAS--------------------------------------NNH------------DDFVRATQYV-APH 95 (540)
Q Consensus 67 ~~~~~~~~~q~~~--------------------------------------~~~------------~~~~~~~~~~-~~~ 95 (540)
+..+.++++|++. ..| +++++||+.. +.+
T Consensus 101 h~~G~~i~~QL~H~Gr~~~~~~~~~~~~~~apS~~~~~~~~~~~~~~~~~~~~p~~mt~~eI~~~i~~f~~AA~~a~~aG 180 (376)
T 1icp_A 101 HAKGGIFFCQIWHVGRVSNKDFQPNGEDPISCTDRGLTPQIMSNGIDIAHFTRPRRLTTDEIPQIVNEFRVAARNAIEAG 180 (376)
T ss_dssp HHTTCEEEEEEECCTTSSCTTTSGGGCCCEESSSCCCCCEECTTSSCEECCCCCEECCTTTHHHHHHHHHHHHHHHHHTT
T ss_pred HhcCCeEEEEeecCCCCcCcccccCCCceecCCCCCCccccccccccccCCCCCCcCCHHHHHHHHHHHHHHHHHHHHcC
Confidence 5667889999986 123 4788888764 459
Q ss_pred CCeEeeccCC
Q psy18231 96 CNGVDLNCGC 105 (540)
Q Consensus 96 ~~~id~~~gc 105 (540)
.|.|++|.+|
T Consensus 181 fDgVEih~a~ 190 (376)
T 1icp_A 181 FDGVEIHGAH 190 (376)
T ss_dssp CSEEEEEECT
T ss_pred CCEEEEcCcc
Confidence 9999999997
|
| >2nzl_A Hydroxyacid oxidase 1; HAOX1, glycolate oxidase, GOX, GOX1, structural genomics, structural genom consortium, SGC, oxidoreductase; HET: FMN; 1.35A {Homo sapiens} PDB: 2rdu_A* 2rdt_A* 2rdw_A* 2w0u_A* | Back alignment and structure |
|---|
Probab=98.10 E-value=2.3e-06 Score=80.04 Aligned_cols=88 Identities=6% Similarity=0.030 Sum_probs=68.4
Q ss_pred ceecCCceEEeccCCCCCHH-------HHHHHHHcCCCEEEeeeeecccccccchhhccccccCCCCCCEEEEEec-CCh
Q psy18231 11 STLLKNLKHCDSTLWTSKLN-------FRQLVRSHNVDLCFTPMIIADSFIKSSKARNNEFSTSPEDTPLVVQFAS-NNH 82 (540)
Q Consensus 11 ~~~~~~~~~~ap~~~~~~~~-------~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~-~~~ 82 (540)
+..+++++++||| |+++++ ++++|+++|+.+++++|.+. .+ +. +.....+.|+.+|+++ .++
T Consensus 90 G~~l~~Pi~iAPm-g~~~l~~~~~e~~laraA~~~G~~~~~s~~~s~-~l-e~-------v~~~~~~~~~~~QLy~~~d~ 159 (392)
T 2nzl_A 90 GQRVSMPICVGAT-AMQRMAHVDGELATVRACQSLGTGMMLSSWATS-SI-EE-------VAEAGPEALRWLQLYIYKDR 159 (392)
T ss_dssp TEEESSSEEECCC-SCGGGTSTTHHHHHHHHHHHHTCEEEECTTCSS-CH-HH-------HHHHCTTSEEEEEECCBSSH
T ss_pred CEecCCceEeccc-cccccccchHHHHHHHHHHHcCCCeeccchHHH-HH-HH-------HHHhcCCCcEEEEEEecCCH
Confidence 4557889999999 999998 99999999999999998651 12 11 1111246799999987 678
Q ss_pred hHHHHHHHHhcC-CCCeEeeccCCCce
Q psy18231 83 DDFVRATQYVAP-HCNGVDLNCGCPQR 108 (540)
Q Consensus 83 ~~~~~~~~~~~~-~~~~id~~~gc~~~ 108 (540)
+.+.+.++..++ +++.++++++||..
T Consensus 160 ~~~~~~~~ra~~~G~~al~itvd~p~~ 186 (392)
T 2nzl_A 160 EVTKKLVRQAEKMGYKAIFVTVDTPYL 186 (392)
T ss_dssp HHHHHHHHHHHHTTCCCEEEECSCSSC
T ss_pred HHHHHHHHHHHHCCCCEEEEeCCCCCc
Confidence 777777776544 88999999999975
|
| >3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A | Back alignment and structure |
|---|
Probab=98.08 E-value=0.0025 Score=58.00 Aligned_cols=101 Identities=12% Similarity=0.288 Sum_probs=65.5
Q ss_pred CCCEEEEeeCCCcEEEEcCCCCeeEEEeecCCcceeEEEEeeC----CC---eEEE-eeC--CCeEEEEEcC--CCceeE
Q psy18231 175 DGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACD----SS---QIAS-GAS--DKSVILWEVT--TGQPVR 242 (540)
Q Consensus 175 dg~~lat~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~----~~---~l~s-~s~--dg~i~iwd~~--~~~~~~ 242 (540)
...+++.....+-+.+||+ +|+.+..+.. +.++.+..-|+ |+ ++++ .-. +++|.+|++. ++. +.
T Consensus 39 ~~s~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~-l~ 114 (355)
T 3amr_A 39 QNSKLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGT-LQ 114 (355)
T ss_dssp GGCEEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCC-EE
T ss_pred CccEEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCc-ee
Confidence 4455666677889999999 8999988863 56677666663 22 2233 333 5799999773 333 44
Q ss_pred eccc------cC-CceeEEEE--CCC-CC-EEEEecCCCcEEEEEecC
Q psy18231 243 RWRE------HA-SKVTCVKF--NED-SS-VVISGSQDNTVMMWDVKS 279 (540)
Q Consensus 243 ~~~~------h~-~~v~~~~~--~~~-~~-~l~s~~~dg~i~iwd~~~ 279 (540)
.+.. .. ..+..+++ +|. +. +++....+|.+..|++..
T Consensus 115 ~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~ 162 (355)
T 3amr_A 115 SMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKA 162 (355)
T ss_dssp ECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEE
T ss_pred eccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEe
Confidence 4421 11 55666777 664 33 677777888888888754
|
| >3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.07 E-value=0.00076 Score=64.88 Aligned_cols=113 Identities=7% Similarity=0.122 Sum_probs=73.4
Q ss_pred cCeEEEEeCC-CCCEEEEeeCCCcEEEEcCCCCeeEEEeecCCcceeEEEEeeCCCeEEEeeC-CC----eEEEEEcCCC
Q psy18231 165 SGLMHTRFPV-DGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGAS-DK----SVILWEVTTG 238 (540)
Q Consensus 165 ~~v~~v~~sp-dg~~lat~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~-dg----~i~iwd~~~~ 238 (540)
.....++++| ++..|.++...+.|+.+|+.++....... .......++|++++++|+.+.. ++ .+.+.+ ..+
T Consensus 137 ~~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~~-~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~-~~g 214 (430)
T 3tc9_A 137 GGAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVYS-GLSKVRTICWTHEADSMIITNDQNNNDRPNNYILT-RES 214 (430)
T ss_dssp SCCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEEC-CCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEE-GGG
T ss_pred CCCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEec-CCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEe-CCC
Confidence 3567899998 46667666655889999987766544333 4566789999999996665554 22 233344 334
Q ss_pred cee--EeccccCCceeEEEECC-CCCEEEEecCCCcEEEEEecCC
Q psy18231 239 QPV--RRWREHASKVTCVKFNE-DSSVVISGSQDNTVMMWDVKSR 280 (540)
Q Consensus 239 ~~~--~~~~~h~~~v~~~~~~~-~~~~l~s~~~dg~i~iwd~~~~ 280 (540)
... ..+. .......++++| ++.++++-..++.|..++....
T Consensus 215 ~~~~~~~l~-~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~ 258 (430)
T 3tc9_A 215 GFKVITELT-KGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQ 258 (430)
T ss_dssp TSCSEEEEE-ECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTT
T ss_pred ceeeeeeec-cCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCC
Confidence 322 2222 234467788999 6776666666788888887654
|
| >1jub_A Dihydroorotate dehydrogenase A; homodimer, alpha-beta barrel, flavoprotein, mutant enzyme, oxidoreductase; HET: FMN; 1.40A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ovd_A* 1jue_A* 1dor_A* 2bsl_A* 2bx7_A* 2dor_A* 1jqv_A* 1jrb_A* 1jrc_A* 1jqx_A* | Back alignment and structure |
|---|
Probab=98.05 E-value=5.6e-06 Score=75.94 Aligned_cols=97 Identities=10% Similarity=0.094 Sum_probs=74.9
Q ss_pred cceecCCceEEeccCCC-C-CHHHHHHHHHcCCCEEEeeeeecccccccchhh----------------------ccccc
Q psy18231 10 RSTLLKNLKHCDSTLWT-S-KLNFRQLVRSHNVDLCFTPMIIADSFIKSSKAR----------------------NNEFS 65 (540)
Q Consensus 10 ~~~~~~~~~~~ap~~~~-~-~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------~~~~~ 65 (540)
.++.+++++++|| |+ + +.+|++.+.+.|+++++++|++......+.+.+ ...+.
T Consensus 7 ~g~~l~npv~~Aa--g~~~~~~~~~~~~~~~G~g~i~~~~v~~~~~~gn~~pr~~~~~~~~in~~g~~~~g~~~~~~~~~ 84 (311)
T 1jub_A 7 ANAKFANPFMNAS--GVHCMTIEDLEELKASQAGAYITKSSTLEKREGNPLPRYVDLELGSINSMGLPNLGFDYYLDYVL 84 (311)
T ss_dssp TTEEESSSEEECT--TSSCSSHHHHHHHHHSSCSCCBCCCBCSSCBCCSCSCCEEEETTEEEECCCCCBSCHHHHHHHHH
T ss_pred CCEEcCCCcEECC--CCCCCCHHHHHHHHHCCCCEEEeCccCCcccCCCCCCcEEecccceeecCCCCCccHHHHHHHHH
Confidence 4678899999996 55 4 899999999999999999999987643221100 01111
Q ss_pred cC--CC--CCCEEEEEecCChhHHHHHHHHhcC-CCC-eEeeccCCCce
Q psy18231 66 TS--PE--DTPLVVQFASNNHDDFVRATQYVAP-HCN-GVDLNCGCPQR 108 (540)
Q Consensus 66 ~~--~~--~~~~~~q~~~~~~~~~~~~~~~~~~-~~~-~id~~~gc~~~ 108 (540)
.. +. +.|+++|+.+.+++++.++++.+.+ +.| .|++|++||..
T Consensus 85 ~~~~~~~~~~p~~~~i~g~~~~~~~~~a~~~~~~g~d~~iein~~~P~~ 133 (311)
T 1jub_A 85 KNQKENAQEGPIFFSIAGMSAAENIAMLKKIQESDFSGITELNLSCPNV 133 (311)
T ss_dssp HHHHHTCSSSCCEEEECCSSHHHHHHHHHHHHHSCCCSEEEEESCCCCS
T ss_pred HHHHhcCCCCCEEEEcCCCCHHHHHHHHHHHHhcCCCeEEEEeccCCCC
Confidence 11 22 6899999999999999999998776 679 99999999985
|
| >1gox_A (S)-2-hydroxy-acid oxidase, peroxisomal; oxidoreductase (oxygen(A)); HET: FMN; 2.00A {Spinacia oleracea} SCOP: c.1.4.1 PDB: 1gyl_A* 1al8_A* 1al7_A* 2cdh_0 | Back alignment and structure |
|---|
Probab=98.01 E-value=8.6e-06 Score=76.07 Aligned_cols=87 Identities=7% Similarity=0.035 Sum_probs=67.5
Q ss_pred ceecCCceEEeccCCCCCHH-------HHHHHHHcCCCEEEeeeeecccccccchhhccccccCCCCCCEEEEEe-cCCh
Q psy18231 11 STLLKNLKHCDSTLWTSKLN-------FRQLVRSHNVDLCFTPMIIADSFIKSSKARNNEFSTSPEDTPLVVQFA-SNNH 82 (540)
Q Consensus 11 ~~~~~~~~~~ap~~~~~~~~-------~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~-~~~~ 82 (540)
+..+++++++||| |+++++ |++.|+++|+.+++++|.+.. ..++..... .|..+|++ +.++
T Consensus 67 G~~~~~Pi~iAPm-g~~~l~~~~~e~a~a~aa~~~G~~~~~s~~~~~~---------ieev~~~~~-~~~~~QLy~~~d~ 135 (370)
T 1gox_A 67 GFKISMPIMIAPT-AMQKMAHPEGEYATARAASAAGTIMTLSSWATSS---------VEEVASTGP-GIRFFQLYVYKDR 135 (370)
T ss_dssp TEEESSSEEECCC-SCGGGTCTTHHHHHHHHHHHTTCCEEECTTCSSC---------HHHHHTTCC-CCEEEEECCBSSH
T ss_pred CcccCCceeEccc-chhhhccchHHHHHHHHHHHcCCCeeccCCCCCC---------HHHHHhhcC-CCceEEEecCCCc
Confidence 4456889999999 999999 999999999999999986431 112211112 78999996 8888
Q ss_pred hHHHHHHHHhcC-CCCeEeeccCCCce
Q psy18231 83 DDFVRATQYVAP-HCNGVDLNCGCPQR 108 (540)
Q Consensus 83 ~~~~~~~~~~~~-~~~~id~~~gc~~~ 108 (540)
+.+.+.++...+ +++.|+++++||..
T Consensus 136 ~~~~~~~~~a~~~G~~ai~it~d~p~~ 162 (370)
T 1gox_A 136 NVVAQLVRRAERAGFKAIALTVDTPRL 162 (370)
T ss_dssp HHHHHHHHHHHHTTCCEEEEECSCSSC
T ss_pred hHHHHHHHHHHHCCCCEEEEeCCCCcc
Confidence 877777665544 88999999999975
|
| >3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A | Back alignment and structure |
|---|
Probab=97.98 E-value=0.00043 Score=62.98 Aligned_cols=133 Identities=11% Similarity=0.223 Sum_probs=86.7
Q ss_pred CCeEEEEeC--CCCceEEeee--------C-CceEEEEE--ecC-Cc-EEEeecCCCeEEEEecc-------ccchhhhh
Q psy18231 397 DCRIRRYDI--RTGNLVTDYV--------G-EPIVDACF--TRD-CQ-CILTCSTDECLRLFDKA-------TGELLEEY 454 (540)
Q Consensus 397 dg~i~iwd~--~~~~~~~~~~--------~-~~i~~~~~--sp~-~~-~l~~~~~dg~i~i~d~~-------~~~~~~~~ 454 (540)
+++|.+|++ .+++ +..+. . ..+..+++ +|. ++ ++++...+|.+..|++. +.+.+++|
T Consensus 98 ~n~l~vf~iDp~~~~-l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f 176 (355)
T 3amr_A 98 KNTIEIYAIDGKNGT-LQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAF 176 (355)
T ss_dssp CCEEEEEEECTTTCC-EEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEE
T ss_pred CCeEEEEEECCCCCc-eeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEe
Confidence 578999966 3443 43331 1 45667777 774 43 68888889999999883 44667777
Q ss_pred ccCcCCcceEEEEecCCCCeEEEeeCCCcEEEEEec-----CCcceeEEEecccceeeeEEEE--cCCCc-EEEeec--C
Q psy18231 455 KGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLV-----DSSQISTLIHSVGKAVVNSLCS--HPTRK-HIMSAC--G 524 (540)
Q Consensus 455 ~~~~~~v~~~~~~~s~~~~~l~s~s~dg~i~iwd~~-----~~~~~~~~~~~~~~~~v~~l~~--s~d~~-~l~s~~--d 524 (540)
..... +.. |...+....|+.+-++.-|..++.+ +++.+..+....-...+..|++ .++++ +|++++ +
T Consensus 177 ~lgsq-~Eg--cvvDd~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~ 253 (355)
T 3amr_A 177 KMNSQ-TEG--MAADDEYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGN 253 (355)
T ss_dssp ECSSC-EEE--EEEETTTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGG
T ss_pred cCCCC-cce--EEEcCCCCeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCC
Confidence 65443 332 3677888899999999776666644 2334433321122246888887 55555 666666 8
Q ss_pred CeeEEEEcc
Q psy18231 525 NNVKLWTAE 533 (540)
Q Consensus 525 ~~i~iw~~~ 533 (540)
+++.+|+.+
T Consensus 254 ~s~~Vydr~ 262 (355)
T 3amr_A 254 SSYAIYDRQ 262 (355)
T ss_dssp TEEEEEESS
T ss_pred CEEEEEECC
Confidence 899999986
|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.96 E-value=0.0065 Score=62.84 Aligned_cols=231 Identities=10% Similarity=0.030 Sum_probs=132.5
Q ss_pred EEEEeeCCCcEEEEcCCCCeeEEEeecCCcceeEEEEeeCCCe-EEEeeCCCeEEEEEcCCC----ceeEeccccCCcee
Q psy18231 178 YCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQ-IASGASDKSVILWEVTTG----QPVRRWREHASKVT 252 (540)
Q Consensus 178 ~lat~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~-l~s~s~dg~i~iwd~~~~----~~~~~~~~h~~~v~ 252 (540)
+|+.+. ...|+..++........+. ....+..++|.+.... +++-...+.|..+++... .....+........
T Consensus 397 ~Ll~an-~~~Ir~i~l~~~~~~~l~~-~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~ 474 (791)
T 3m0c_C 397 YLFFTN-RHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPD 474 (791)
T ss_dssp EEEEEC-BSSEEEECTTSCCCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCC
T ss_pred cccccc-ccceeEeeccCCcceeeec-CCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcc
Confidence 444333 4568888887665444444 4566788999985444 455556688999988652 22333333445677
Q ss_pred EEEECCCCC-EEEEecCCCcEEEEEecCCCCCCcchhhhhHhhhhcCCceeEEEEeecccccccccCceeeEEEeeeecc
Q psy18231 253 CVKFNEDSS-VVISGSQDNTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKY 331 (540)
Q Consensus 253 ~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (540)
.|++.+.+. +.++-...+.|.+.++.......+
T Consensus 475 GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~~~l---------------------------------------------- 508 (791)
T 3m0c_C 475 GLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTL---------------------------------------------- 508 (791)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTSSSEEEE----------------------------------------------
T ss_pred eeeeeecCCcEEEEecCCCeEEEEeCCCCeEEEE----------------------------------------------
Confidence 899987664 445555667888888764431000
Q ss_pred cccceeeeeeccceeEEEeecccceecccccccccccchhhhhhcccccEEEEEecC--CeeEeeeC--CCeEEEEeCCC
Q psy18231 332 LNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEARDSITSVHVSD--HEILTASL--DCRIRRYDIRT 407 (540)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~--~~l~~~~~--dg~i~iwd~~~ 407 (540)
+...-.....|+++| ..|+.+.. .+.|...+++.
T Consensus 509 ------------------------------------------~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG 546 (791)
T 3m0c_C 509 ------------------------------------------FRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNG 546 (791)
T ss_dssp ------------------------------------------EECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTS
T ss_pred ------------------------------------------EeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCC
Confidence 001112356778876 45555442 36788888875
Q ss_pred CceEEeeeC--CceEEEEEecCCcEEEee-cCCCeEEEEeccccchhhhhccCcCCcceEEEEecCCCCeEEEeeCCCcE
Q psy18231 408 GNLVTDYVG--EPIVDACFTRDCQCILTC-STDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKI 484 (540)
Q Consensus 408 ~~~~~~~~~--~~i~~~~~sp~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~s~~~~~l~s~s~dg~i 484 (540)
......+.. .....|++++.+..|+.+ ...+.|..+|+........+.........+.+++.. +.++++-...+.|
T Consensus 547 ~~~~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~~-~~lYwtD~~~~~I 625 (791)
T 3m0c_C 547 VDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFE-DKVFWTDIINEAI 625 (791)
T ss_dssp CCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEET-TEEEEEETTTTEE
T ss_pred CceEEEEeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCceEEEecCCCccCCCCEEEEeC-CEEEEEECCCCEE
Confidence 444333332 468899999766655554 456789999985433322222211111223334432 2334444566788
Q ss_pred EEEEecCCcceeEEE
Q psy18231 485 YKWQLVDSSQISTLI 499 (540)
Q Consensus 485 ~iwd~~~~~~~~~~~ 499 (540)
...|..+++.+..+.
T Consensus 626 ~~~dk~tG~~~~~l~ 640 (791)
T 3m0c_C 626 FSANRLTGSDVNLLA 640 (791)
T ss_dssp EEEETTTCCCCEEEE
T ss_pred EEEeCCCCcceEEee
Confidence 888877887776665
|
| >3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B | Back alignment and structure |
|---|
Probab=97.96 E-value=0.0088 Score=54.76 Aligned_cols=205 Identities=8% Similarity=-0.028 Sum_probs=122.6
Q ss_pred eecCeEEEEeCCCCCEEE-EeeCCCcEEEEcCCCCee-EEEeecCCcceeEEEEee-CCCeEEEeeCCCeEEEEEcCCCc
Q psy18231 163 VLSGLMHTRFPVDGSYCL-TCGSDKKIKLWNPYRNLL-LKTYGGHAHEVNDATAAC-DSSQIASGASDKSVILWEVTTGQ 239 (540)
Q Consensus 163 h~~~v~~v~~spdg~~la-t~~~dg~i~iwd~~~~~~-~~~~~~h~~~v~~l~~sp-~~~~l~s~s~dg~i~iwd~~~~~ 239 (540)
.......+.|++.+..|. +-...+.|..+++..+.. ...+...-.....+++.+ .++++++-...+.|.++++....
T Consensus 33 ~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~ 112 (318)
T 3sov_A 33 GLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSL 112 (318)
T ss_dssp EEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCS
T ss_pred CCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCCCeEEEEECCCCEEEEEECCCCc
Confidence 345677899998655554 555578899999876532 122222234567899987 44555566667899999986543
Q ss_pred eeEeccccCCceeEEEECCCCCEEEEec--CCCcEEEEEecCCCCCCcchhhhhHhhhhcCCceeEEEEeeccccccccc
Q psy18231 240 PVRRWREHASKVTCVKFNEDSSVVISGS--QDNTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHLSN 317 (540)
Q Consensus 240 ~~~~~~~h~~~v~~~~~~~~~~~l~s~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (540)
....+.........+++.|.+..|+.+. ..+.|...++.......+
T Consensus 113 ~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~-------------------------------- 160 (318)
T 3sov_A 113 RKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFII-------------------------------- 160 (318)
T ss_dssp CEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEEE--------------------------------
T ss_pred EEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEEE--------------------------------
Confidence 3333334445678999998655555544 245666666543221000
Q ss_pred CceeeEEEeeeecccccceeeeeeccceeEEEeecccceecccccccccccchhhhhhcccccEEEEEecC--Cee-Eee
Q psy18231 318 GLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEARDSITSVHVSD--HEI-LTA 394 (540)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~--~~l-~~~ 394 (540)
....-.....+++++ +.| ++-
T Consensus 161 --------------------------------------------------------~~~~l~~Pnglavd~~~~~lY~aD 184 (318)
T 3sov_A 161 --------------------------------------------------------INSEIYWPNGLTLDYEEQKLYWAD 184 (318)
T ss_dssp --------------------------------------------------------ECSSCSCEEEEEEETTTTEEEEEE
T ss_pred --------------------------------------------------------EECCCCCccEEEEeccCCEEEEEE
Confidence 000112345777875 444 444
Q ss_pred eCCCeEEEEeCCCCceEEeee--CCceEEEEEecCCcEEEeecCCCeEEEEeccccchhhhhcc
Q psy18231 395 SLDCRIRRYDIRTGNLVTDYV--GEPIVDACFTRDCQCILTCSTDECLRLFDKATGELLEEYKG 456 (540)
Q Consensus 395 ~~dg~i~iwd~~~~~~~~~~~--~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~ 456 (540)
+..+.|..+|++......... ......+++. .+.++.+-...+.|..+|..+++....+..
T Consensus 185 ~~~~~I~~~d~dG~~~~~~~~~~~~~P~glav~-~~~lywtd~~~~~V~~~~~~~G~~~~~i~~ 247 (318)
T 3sov_A 185 AKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLF-EDILYWTDWSTHSILACNKYTGEGLREIHS 247 (318)
T ss_dssp TTTTEEEEEETTSCSCEEEECSCCSCEEEEEEE-TTEEEEEETTTTEEEEEETTTCCSCEEEEC
T ss_pred CCCCEEEEEcCCCCceEEEecCCCCCceEEEEe-CCEEEEEecCCCeEEEEECCCCCceEEEeC
Confidence 567889999987433322222 2345677775 345566666778999999888876655543
|
| >2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.95 E-value=0.0051 Score=57.36 Aligned_cols=100 Identities=10% Similarity=0.061 Sum_probs=60.7
Q ss_pred cCeEEEEeCCCCCEEEEeeCCCcEEEEcCCCCee--EEEee---cCCcceeEEEEeeC---CCeEEEe-eCC-----CeE
Q psy18231 165 SGLMHTRFPVDGSYCLTCGSDKKIKLWNPYRNLL--LKTYG---GHAHEVNDATAACD---SSQIASG-ASD-----KSV 230 (540)
Q Consensus 165 ~~v~~v~~spdg~~lat~~~dg~i~iwd~~~~~~--~~~~~---~h~~~v~~l~~sp~---~~~l~s~-s~d-----g~i 230 (540)
..-..++|.|||++++ +..+|.|.+++ +++. +..+. ........++|+|+ +..|..+ ..+ +.|
T Consensus 31 ~~P~~ia~~pdG~l~V-~e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v 107 (352)
T 2ism_A 31 EVPWALAFLPDGGMLI-AERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQV 107 (352)
T ss_dssp SCEEEEEECTTSCEEE-EETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEE
T ss_pred CCceEEEEcCCCeEEE-EeCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEE
Confidence 4567899999998554 45679999998 4432 22221 12356789999998 4454444 322 678
Q ss_pred EEEEcCCCc-----ee-Eecc---ccCCceeEEEECCCCCEEEEec
Q psy18231 231 ILWEVTTGQ-----PV-RRWR---EHASKVTCVKFNEDSSVVISGS 267 (540)
Q Consensus 231 ~iwd~~~~~-----~~-~~~~---~h~~~v~~~~~~~~~~~l~s~~ 267 (540)
..++...+. .+ ..+. ........++|.|||.+.++.+
T Consensus 108 ~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G 153 (352)
T 2ism_A 108 VRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTG 153 (352)
T ss_dssp EEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECC
T ss_pred EEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEEC
Confidence 888876432 11 1122 1112346789999987666544
|
| >2hsa_B 12-oxophytodienoate reductase 3; alpha beta 8 barrel, flavoprotein, jasmonate biosynthesis, oxidoreductase; HET: FMN; 1.50A {Solanum lycopersicum} PDB: 2hs6_A* 3hgs_A* 2hs8_A* 3hgo_A* 1q45_A* 2g5w_A* 2q3o_A* | Back alignment and structure |
|---|
Probab=97.92 E-value=5.2e-06 Score=78.07 Aligned_cols=110 Identities=10% Similarity=0.095 Sum_probs=73.6
Q ss_pred cceecCCceEEeccCCCC---CHH-------HHHHHHHcCCCEEEeeeeecccccccc--------hhh---cccc--cc
Q psy18231 10 RSTLLKNLKHCDSTLWTS---KLN-------FRQLVRSHNVDLCFTPMIIADSFIKSS--------KAR---NNEF--ST 66 (540)
Q Consensus 10 ~~~~~~~~~~~ap~~~~~---~~~-------~r~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~---~~~~--~~ 66 (540)
+.+.|++|+++|||++.. +.| ||+.++ |+++++||++.....-+.. ... .+.+ ..
T Consensus 25 g~~~L~NRiv~aPm~~~~a~~g~pt~~~~~yy~~rA~--G~GLIitE~~~v~~~g~~~~~~~gi~~d~~i~~~k~l~~av 102 (402)
T 2hsa_B 25 GKFNLSHRVVLAPMTRCRALNNIPQAALGEYYEQRAT--AGGFLITEGTMISPTSAGFPHVPGIFTKEQVREWKKIVDVV 102 (402)
T ss_dssp TTEEESCSEEECCCCCCCSGGGCCCHHHHHHHHHHCC--TTCEEECCCEESSTTCCCSTTCCBCSSHHHHHHHHHHHHHH
T ss_pred CCEEecCCeEECCCCCCcCCCCCCCHHHHHHHHHHhc--cCCEEEecceeeccccccCCCCcccCCHHHHHHHHHHHHHH
Confidence 468899999999999987 677 565554 5999999998765322211 111 2222 12
Q ss_pred CCCCCCEEEEEec----------------------------------------CCh------------hHHHHHHHHh-c
Q psy18231 67 SPEDTPLVVQFAS----------------------------------------NNH------------DDFVRATQYV-A 93 (540)
Q Consensus 67 ~~~~~~~~~q~~~----------------------------------------~~~------------~~~~~~~~~~-~ 93 (540)
+..+.++++|++- ..| +++++||+.. +
T Consensus 103 h~~G~~i~~QL~H~Gr~~~~~~~~~g~~~~apS~v~~~~~~~~~~~~g~~~~~~~p~~mt~~eI~~ii~~f~~AA~~a~~ 182 (402)
T 2hsa_B 103 HAKGAVIFCQLWHVGRASHEVYQPAGAAPISSTEKPISNRWRILMPDGTHGIYPKPRAIGTYEISQVVEDYRRSALNAIE 182 (402)
T ss_dssp HHTTCEEEEEEECCTTSCCGGGCTTCCCCEESCSCCCCTTCEEECTTSCEEECCCCEECCGGGHHHHHHHHHHHHHHHHH
T ss_pred HhcCCeEEEEeccCCcccccccccCCCccccCCCcccccccccccccccccCCCCCccCCHHHHHHHHHHHHHHHHHHHH
Confidence 5667889999982 124 5788888764 4
Q ss_pred CCCCeEeeccCC---------CceEEEeccccceecc
Q psy18231 94 PHCNGVDLNCGC---------PQRWAIKEGYGCALLS 121 (540)
Q Consensus 94 ~~~~~id~~~gc---------~~~~~~~~g~g~~l~~ 121 (540)
.+.|.|++|++| |......+.+|..+..
T Consensus 183 AGfDgVEIh~ahGYLl~QFLsp~~N~RtD~yGGslen 219 (402)
T 2hsa_B 183 AGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSLAN 219 (402)
T ss_dssp TTCSEEEEECCTTSHHHHHHCTTTCCCCSTTSSSHHH
T ss_pred cCCCEEEECCccchHHHhccCCccCccCCccCcChhh
Confidence 599999999997 6544444455555543
|
| >3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ... | Back alignment and structure |
|---|
Probab=97.92 E-value=0.04 Score=59.67 Aligned_cols=111 Identities=12% Similarity=0.031 Sum_probs=68.9
Q ss_pred CeEEEEeCCCCCEEEEeeCCCcEEEEcCCCCeeEEEe-ecCCcceeEEEEeeC------CCeEEEeeC-CCeEEEEEcCC
Q psy18231 166 GLMHTRFPVDGSYCLTCGSDKKIKLWNPYRNLLLKTY-GGHAHEVNDATAACD------SSQIASGAS-DKSVILWEVTT 237 (540)
Q Consensus 166 ~v~~v~~spdg~~lat~~~dg~i~iwd~~~~~~~~~~-~~h~~~v~~l~~sp~------~~~l~s~s~-dg~i~iwd~~~ 237 (540)
.|...+.+. .+++.++ ++.+.++++..++..... ..-...|.|+++.|. +++++.|.. |++|+|+++.+
T Consensus 515 ~I~~As~n~--~~vvva~-g~~l~~fel~~~~L~~~~~~~l~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~ 591 (1158)
T 3ei3_A 515 NISVASCNS--SQVVVAV-GRALYYLQIHPQELRQISHTEMEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPS 591 (1158)
T ss_dssp CCCEEEECS--SEEEEEE-TTEEEEEEEETTEEEEEEEEECSSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTT
T ss_pred EEEEEEeCC--CEEEEEE-CCEEEEEEeeCCceeeecccCCCCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCC
Confidence 344444432 3555554 577878777655322111 123568999999863 468999996 99999999987
Q ss_pred CceeEeccc-cCCceeEEEEC--CCCCEEEEecCCCcEEEEEecC
Q psy18231 238 GQPVRRWRE-HASKVTCVKFN--EDSSVVISGSQDNTVMMWDVKS 279 (540)
Q Consensus 238 ~~~~~~~~~-h~~~v~~~~~~--~~~~~l~s~~~dg~i~iwd~~~ 279 (540)
.+.+....- ......++.+. ....+|..|-.||.+.-+.+..
T Consensus 592 l~~~~~~~L~~~~~p~si~l~~~~~~~~L~igl~dG~l~~~~~d~ 636 (1158)
T 3ei3_A 592 FELLHKEMLGGEIIPRSILMTTFESSHYLLCALGDGALFYFGLNI 636 (1158)
T ss_dssp CCEEEEEECCSSCCEEEEEEEEETTEEEEEEEETTSEEEEEEECT
T ss_pred CCeEEEEECCCCCCCcEEEEEEeCCCcEEEEEeCCCeEEEEEEcC
Confidence 766543221 11233444332 2345788888999887776643
|
| >3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=97.92 E-value=0.0037 Score=60.33 Aligned_cols=153 Identities=9% Similarity=0.051 Sum_probs=89.4
Q ss_pred EEEEecC---CeeEeeeCCCeEEEEeCC-------CCce--------------EEeee-CCceEEEEEecCCcEE-Eeec
Q psy18231 382 TSVHVSD---HEILTASLDCRIRRYDIR-------TGNL--------------VTDYV-GEPIVDACFTRDCQCI-LTCS 435 (540)
Q Consensus 382 ~~l~~~~---~~l~~~~~dg~i~iwd~~-------~~~~--------------~~~~~-~~~i~~~~~sp~~~~l-~~~~ 435 (540)
..++++| .++++-..++.|..+|++ ++.. +.... ......++|+|+|++| ++-+
T Consensus 250 ~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~ 329 (496)
T 3kya_A 250 NGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVI 329 (496)
T ss_dssp CCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEET
T ss_pred eEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccccccccccceeEecCCCCCceEEEEcCCCCEEEEEeC
Confidence 3556666 345555677889999987 4543 11222 2446899999999954 4445
Q ss_pred CCCeEEEEecc--ccch--hhhhccC------c---------CCcceEEEEec-------CCCCeEEEeeCCCcEEEEEe
Q psy18231 436 TDECLRLFDKA--TGEL--LEEYKGH------K---------SGDFRIECCLD-------SKDSQIFCGSSDGKIYKWQL 489 (540)
Q Consensus 436 ~dg~i~i~d~~--~~~~--~~~~~~~------~---------~~v~~~~~~~s-------~~~~~l~s~s~dg~i~iwd~ 489 (540)
....|+.+|.. .+.. ...+.+. . ..-... ++.. ++|.++++=...+.|+.++
T Consensus 330 ~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~~g-v~vd~~~~~~~~~g~lyVaD~~N~rIr~i~- 407 (496)
T 3kya_A 330 NNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNNPCQG-VFVKNPDYTGEEEYDFYFVDRLNFCVRKVT- 407 (496)
T ss_dssp TTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSSEEEE-EEEECTTCCSSCCEEEEEEEGGGTEEEEEC-
T ss_pred CCCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccCCCeEE-EEEccccccccCCCeEEEEECCCCEEEEEe-
Confidence 67889886643 2221 0112111 0 001101 1333 4556666666778899998
Q ss_pred cCCcceeEEEec------------c----------cceeeeEEEEcCC-CcEEEeec-CCeeEEEEcccccC
Q psy18231 490 VDSSQISTLIHS------------V----------GKAVVNSLCSHPT-RKHIMSAC-GNNVKLWTAEEDYG 537 (540)
Q Consensus 490 ~~~~~~~~~~~~------------~----------~~~~v~~l~~s~d-~~~l~s~~-d~~i~iw~~~~~~~ 537 (540)
.++ .+.++... + .-.....|+++++ |.+.++=. .+.|+.++++.+..
T Consensus 408 ~~G-~v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIavd~~~g~lyVaD~~N~rIrki~~~~~~~ 478 (496)
T 3kya_A 408 PEG-IVSTYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLVYDDVKEMFYVHDQVGHTIRTISMEQEEN 478 (496)
T ss_dssp TTC-BEEEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEEETTTTEEEEEETTTTEEEEEEECCCC-
T ss_pred CCC-CEEEEecccccccccCccccccCCCCchhhhhcCCCcEEEEECCCCEEEEEeCCCCEEEEEECCCCcc
Confidence 566 34444311 0 0123678999997 66655555 88999999987654
|
| >1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1 | Back alignment and structure |
|---|
Probab=97.91 E-value=0.015 Score=54.22 Aligned_cols=252 Identities=10% Similarity=0.100 Sum_probs=154.7
Q ss_pred eeeeecccccceeeeeecCeEEEEeCCCCCEEEEeeCCCcEEEEcCCCCeeEEEeecCCcceeEEEEeeCCCeEEEeeCC
Q psy18231 148 SIRVYRPLTVNRELFVLSGLMHTRFPVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASD 227 (540)
Q Consensus 148 ~i~~~~~~~~~~~~~h~~~v~~v~~spdg~~lat~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~d 227 (540)
.+-+-|...........-.--+.-.+|..+.||.=. ..++.|+|+++...++.+.-. ..|.-=.|-.+. .|+-.+ +
T Consensus 49 ~vvIiDl~~~~~~~rrpi~AdsAIMnP~~~iiALra-g~~lQiFnle~K~klks~~~~-e~VvfWkWis~~-~l~lVT-~ 124 (494)
T 1bpo_A 49 QVVIIDMNDPSNPIRRPISADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMT-DDVTFWKWISLN-TVALVT-D 124 (494)
T ss_dssp EEEEEETTSTTSCEEEECCCSEEEECSSSSCEEEEE-TTEEEEEETTTTEEEEEEECS-SCCCEEEEEETT-EEEEEC-S
T ss_pred eEEEEECCCCCcceecccccceeeeCCCCcEEEEec-CCeEEEEchHHhhhhcceecC-CCceEEEecCCC-eEEEEc-C
Confidence 455555544333222222333445688888888665 689999999999999988754 456555666443 455444 3
Q ss_pred CeEEEEEcCCC-ceeEecccc----CCceeEEEECCCCCEEEEecC-------CCcEEEEEecCCCCCCcchhhhhHhhh
Q psy18231 228 KSVILWEVTTG-QPVRRWREH----ASKVTCVKFNEDSSVVISGSQ-------DNTVMMWDVKSRSHHPIQVRCLNEALK 295 (540)
Q Consensus 228 g~i~iwd~~~~-~~~~~~~~h----~~~v~~~~~~~~~~~l~s~~~-------dg~i~iwd~~~~~~~~~~~~~~~~~~~ 295 (540)
..|.-|+++.. .+...+..| ...|.....+++.++++..|- .|.+.+|..+.....
T Consensus 125 taVyHWsi~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~sQ------------ 192 (494)
T 1bpo_A 125 NAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQ------------ 192 (494)
T ss_dssp SEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTCCEE------------
T ss_pred CeeEEecccCCCCchhheecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccccccc------------
Confidence 57999999743 455555544 346777777888887764432 356677776655421
Q ss_pred hcCCceeEEEEeecccccccccCceeeEEEeeeecccccceeeeeeccceeEEEeecccceecccccccccccchhhhhh
Q psy18231 296 EARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALK 375 (540)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (540)
.+.
T Consensus 193 -----------------------------------------------------------------------------~ie 195 (494)
T 1bpo_A 193 -----------------------------------------------------------------------------PIE 195 (494)
T ss_dssp -----------------------------------------------------------------------------EEC
T ss_pred -----------------------------------------------------------------------------hhe
Confidence 223
Q ss_pred cccccEEEEEecC-----CeeEeeeC---CCeEEEEeCCCC---c-----eEEeee------CCceEEEEEecCCcEEEe
Q psy18231 376 EARDSITSVHVSD-----HEILTASL---DCRIRRYDIRTG---N-----LVTDYV------GEPIVDACFTRDCQCILT 433 (540)
Q Consensus 376 ~~~~~v~~l~~~~-----~~l~~~~~---dg~i~iwd~~~~---~-----~~~~~~------~~~i~~~~~sp~~~~l~~ 433 (540)
+|...-..+.... ..+..+.. .+++.+-++... . ....+. ..--.++..|+....+..
T Consensus 196 Ghaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyv 275 (494)
T 1bpo_A 196 GHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFL 275 (494)
T ss_dssp CSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEE
T ss_pred eeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEE
Confidence 3333333332221 11222221 368888888543 1 111111 134678889998899999
Q ss_pred ecCCCeEEEEeccccchhhhhccCcCCcceEEEEecCCCCeEEEeeCCCcEEEEEecCCcc
Q psy18231 434 CSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQ 494 (540)
Q Consensus 434 ~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~ 494 (540)
-+.-|.+++||+.++.++..-+-....|... +.+....=++.....|.|.--.+.+...
T Consensus 276 iTK~G~i~lyDleTgt~i~~nrIs~~~iF~t--~~~~~~~Gi~~Vnr~GqVl~v~v~e~~i 334 (494)
T 1bpo_A 276 ITKYGYIHLYDLETGTCIYMNRISGETIFVT--APHEATAGIIGVNRKGQVLSVCVEEENI 334 (494)
T ss_dssp EETTSEEEEEETTTCCEEEEEECCSSCEEEE--EEETTTTEEEEEETTCEEEEEEECTTTH
T ss_pred EecCceEEEEecccceeeeeecccCCceEEe--cccCCCCcEEEEccCceEEEEEEccccc
Confidence 9999999999999999887776666666543 4444444566666777777666655543
|
| >2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus} | Back alignment and structure |
|---|
Probab=97.91 E-value=0.0097 Score=54.83 Aligned_cols=105 Identities=13% Similarity=0.140 Sum_probs=60.4
Q ss_pred ccEEEEEecC-CeeEeeeCCCeEEEEeCCCCceEEeee------CCceEEEEEecCCcEEEeecCCCeEEEEeccccchh
Q psy18231 379 DSITSVHVSD-HEILTASLDCRIRRYDIRTGNLVTDYV------GEPIVDACFTRDCQCILTCSTDECLRLFDKATGELL 451 (540)
Q Consensus 379 ~~v~~l~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~------~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~ 451 (540)
..+..+.+.+ ..++..+.+|.+++.+.+.++.-..+. ...+..+.+.+++.+++++. +|.+ .+....++.-
T Consensus 205 ~~~~~~~~~~~g~~~~~~~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~-~g~i-~~S~DgG~tW 282 (327)
T 2xbg_A 205 RRLHNMGFTPDGRLWMIVNGGKIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRTPNEVWLAGG-AGAL-LCSQDGGQTW 282 (327)
T ss_dssp SCEEEEEECTTSCEEEEETTTEEEEEETTEEEEECCCBCTTSSCCSCEEEEEESSSSCEEEEES-TTCE-EEESSTTSSC
T ss_pred CccceeEECCCCCEEEEeCCceEEEecCCCCCeeEeccCCcccCCcceEEEEecCCCEEEEEeC-CCeE-EEeCCCCccc
Confidence 3456666766 556666778887776433333322221 13588899998887777655 5666 3333434332
Q ss_pred hhhc---cCcCCcceEEEEecCCCCeEEEeeCCCcEEEEE
Q psy18231 452 EEYK---GHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQ 488 (540)
Q Consensus 452 ~~~~---~~~~~v~~~~~~~s~~~~~l~s~s~dg~i~iwd 488 (540)
..+. .....++.+ .|.+++ .+++++.+|.|.-++
T Consensus 283 ~~~~~~~~~~~~~~~v--~~~~~~-~~~~~G~~G~i~~~~ 319 (327)
T 2xbg_A 283 QQDVDVKKVPSNFYKI--LFFSPD-QGFILGQKGILLRYV 319 (327)
T ss_dssp EECGGGTTSSSCCCEE--EEEETT-EEEEECSTTEEEEEC
T ss_pred EEcCccCCCCCCeEEE--EEECCC-ceEEEcCCceEEEEc
Confidence 2222 223455666 555444 466677889877665
|
| >1p0k_A Isopentenyl-diphosphate delta-isomerase; terpene biosynthesis, dimethylallyl diphosphate, flavoprotein; 1.90A {Bacillus subtilis} SCOP: c.1.4.1 PDB: 1p0n_A* | Back alignment and structure |
|---|
Probab=97.90 E-value=1.6e-05 Score=74.09 Aligned_cols=93 Identities=6% Similarity=0.038 Sum_probs=69.3
Q ss_pred ceecCCceEEeccCCCC-------CHHHHHHHHHcCCCEEEeeeeecccccccch--hhccccccCCCCCCEEEEEe-cC
Q psy18231 11 STLLKNLKHCDSTLWTS-------KLNFRQLVRSHNVDLCFTPMIIADSFIKSSK--ARNNEFSTSPEDTPLVVQFA-SN 80 (540)
Q Consensus 11 ~~~~~~~~~~ap~~~~~-------~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~q~~-~~ 80 (540)
+..+++++++|||+|++ +++++++|+++|+.+.+++|.++ ++... ...+.+.....+.|++.|+. +.
T Consensus 51 g~~~~~P~~iApm~g~~~~~~~~~~~~~a~aa~~~G~~~~~~~~~~~---l~~~~~~~~~~~~~~~~~~~pv~~~i~~~~ 127 (349)
T 1p0k_A 51 ELSSSSPIFINAMTGGGGKLTYEINKSLARAASQAGIPLAVGSQMSA---LKDPSERLSYEIVRKENPNGLIFANLGSEA 127 (349)
T ss_dssp TEEESCSEEEECCCCSCHHHHHHHHHHHHHHHHHHTCCEECCCCTTT---TTCHHHHHHHHHHHHHCSSSCEEEEEETTC
T ss_pred CcccCCceEEcCccccchhhhhHHHHHHHHHHHHcCCcEEeccchhc---ccCcccccceehhhhhCCCceeEEeecCCC
Confidence 45578899999999999 99999999999999999988654 22211 11122222345789999999 78
Q ss_pred ChhHHHHHHHHhcCCCCeEeeccCCCce
Q psy18231 81 NHDDFVRATQYVAPHCNGVDLNCGCPQR 108 (540)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~id~~~gc~~~ 108 (540)
+++.+.++++. .+++.|++|.+||..
T Consensus 128 ~~~~~~~~~~~--~gad~i~i~~~~~~~ 153 (349)
T 1p0k_A 128 TAAQAKEAVEM--IGANALQIHLNVIQE 153 (349)
T ss_dssp CHHHHHHHHHH--TTCSEEEEEECTTTT
T ss_pred CHHHHHHHHHh--cCCCeEEecccchhh
Confidence 88887766554 357899999999864
|
| >2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.89 E-value=0.0018 Score=59.02 Aligned_cols=103 Identities=11% Similarity=0.040 Sum_probs=54.7
Q ss_pred cCCeeEeeeCC-----CeEEEEeCCCCceEEe--eeCCceEEEEEecCCcEEEeecCC-----CeEEEEeccccch--hh
Q psy18231 387 SDHEILTASLD-----CRIRRYDIRTGNLVTD--YVGEPIVDACFTRDCQCILTCSTD-----ECLRLFDKATGEL--LE 452 (540)
Q Consensus 387 ~~~~l~~~~~d-----g~i~iwd~~~~~~~~~--~~~~~i~~~~~sp~~~~l~~~~~d-----g~i~i~d~~~~~~--~~ 452 (540)
...+++.|+.+ ..+.+||+.+.+-... +........+..-++++++.|+.+ ..+.+||..+.+- +.
T Consensus 159 ~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~ 238 (301)
T 2vpj_A 159 SGVIYCLGGYDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVALLNDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVT 238 (301)
T ss_dssp TTEEEEECCBCSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTTEEEEEC
T ss_pred CCEEEEECCCCCCcccceEEEEeCCCCcEEeCCCCCcccccceEEEECCEEEEEeCCCCCcccceEEEEeCCCCcEEECC
Confidence 33555555543 4578888887653322 111111111222367788887764 4689999876542 22
Q ss_pred hhccCcCCcceEEEEecCCCCeEEEeeCC-----CcEEEEEecCCc
Q psy18231 453 EYKGHKSGDFRIECCLDSKDSQIFCGSSD-----GKIYKWQLVDSS 493 (540)
Q Consensus 453 ~~~~~~~~v~~~~~~~s~~~~~l~s~s~d-----g~i~iwd~~~~~ 493 (540)
.+... ..... +...+++.++.|+.+ ..|.+||..+.+
T Consensus 239 ~~p~~--r~~~~--~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 280 (301)
T 2vpj_A 239 SMTTP--RCYVG--ATVLRGRLYAIAGYDGNSLLSSIECYDPIIDS 280 (301)
T ss_dssp CCSSC--CBSCE--EEEETTEEEEECCBCSSSBEEEEEEEETTTTE
T ss_pred CCCCc--cccee--EEEECCEEEEEcCcCCCcccccEEEEcCCCCe
Confidence 22111 11111 122366777788765 357888877653
|
| >1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 | Back alignment and structure |
|---|
Probab=97.82 E-value=1.9e-05 Score=80.90 Aligned_cols=112 Identities=17% Similarity=0.125 Sum_probs=73.4
Q ss_pred cceecCCceEEeccCC-CCCH--HHHHHHHHc------CCCEEEeeeeecccccccchh--------h---cccc--ccC
Q psy18231 10 RSTLLKNLKHCDSTLW-TSKL--NFRQLVRSH------NVDLCFTPMIIADSFIKSSKA--------R---NNEF--STS 67 (540)
Q Consensus 10 ~~~~~~~~~~~ap~~~-~~~~--~~r~~~~~~------~~~~~~~~~~~~~~~~~~~~~--------~---~~~~--~~~ 67 (540)
+++.+++|++||||++ .++. |++++++.| |+++.+|||+.....-+..+. . .+.+ ..+
T Consensus 12 g~~~l~nRi~~apm~~~~~~~~~~~~~~~~~y~~ra~gg~gliite~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~vh 91 (671)
T 1ps9_A 12 GFTTLKNRVLMGSMHTGLEEYPDGAERLAAFYAERARHGVALIVSGGIAPDLTGVGMEGGAMLNDASQIPHHRTITEAVH 91 (671)
T ss_dssp SSCEESSSEEECCCCCSCTTSTTHHHHHHHHHHHHHHTTCSEEEEEEEBSSSTTCSBTTCCBCCSGGGHHHHHHHHHHHH
T ss_pred CCEEEcCceEECCccCCcCCCCCCcHHHHHHHHHHhcCCCCEEEecccccCccccCCCCCCccCCHHHHHHHHHHHHHHH
Confidence 4678999999999998 6653 456555554 899999999875432221111 1 1111 124
Q ss_pred CCCCCEEEEEecC----------------------Ch------------hHHHHHHHHh-cCCCCeEeeccCC-------
Q psy18231 68 PEDTPLVVQFASN----------------------NH------------DDFVRATQYV-APHCNGVDLNCGC------- 105 (540)
Q Consensus 68 ~~~~~~~~q~~~~----------------------~~------------~~~~~~~~~~-~~~~~~id~~~gc------- 105 (540)
..+.++++|++.. .| ++++++|+.. +.+.|.|++|.+|
T Consensus 92 ~~g~~i~~Ql~h~Gr~~~~~~~~~ps~~~~~~~~~~p~~~t~~ei~~~i~~~~~aA~~a~~aGfd~veih~~~gyl~~qF 171 (671)
T 1ps9_A 92 QEGGKIALQILHTGRYSYQPHLVAPSALQAPINRFVPHELSHEEILQLIDNFARCAQLAREAGYDGVEVMGSEGYLINEF 171 (671)
T ss_dssp HTTCCEEEEECCCGGGSBSTTCEESSSCCCTTCSSCCEECCHHHHHHHHHHHHHHHHHHHHTTCSEEEEEECBTSHHHHH
T ss_pred hcCCEEEEEeccCCcccCCCCCcCCCCcccccCCCCCccCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEccccchHHHHh
Confidence 6678999999874 33 5788888764 4599999999998
Q ss_pred --CceEEEeccccceecc
Q psy18231 106 --PQRWAIKEGYGCALLS 121 (540)
Q Consensus 106 --~~~~~~~~g~g~~l~~ 121 (540)
|......+.+|..+..
T Consensus 172 lsp~~n~r~d~yGgs~~~ 189 (671)
T 1ps9_A 172 LTLRTNQRSDQWGGDYRN 189 (671)
T ss_dssp HCTTTCCCCSTTSSSHHH
T ss_pred CCCccCCCcCcCCCcHHH
Confidence 4433334445555544
|
| >2e6f_A Dihydroorotate dehydrogenase; chagas disease, pyrimidine biosynthesis, fumarate reductase, energy metabolism, redox homeostasis, flavoprotein; HET: FMN OXC; 1.26A {Trypanosoma cruzi} PDB: 2e6a_A* 2e6d_A* 2e68_A* 2djl_A* 2djx_A* 3c3n_A* 2b4g_A* 3c61_A* 3mhu_A* 3mjy_A* | Back alignment and structure |
|---|
Probab=97.82 E-value=3.3e-05 Score=70.90 Aligned_cols=99 Identities=12% Similarity=0.074 Sum_probs=74.7
Q ss_pred cceecCCceEEeccCCCCCHHHHHHHHHcCCCEEEeeeeecccccccc-------------------h-hh--cccccc-
Q psy18231 10 RSTLLKNLKHCDSTLWTSKLNFRQLVRSHNVDLCFTPMIIADSFIKSS-------------------K-AR--NNEFST- 66 (540)
Q Consensus 10 ~~~~~~~~~~~ap~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~-~~--~~~~~~- 66 (540)
.++.+++++++|++.--.+..+++.+.+.|+++++++|++......+. + .. ...+..
T Consensus 9 ~g~~l~nPi~~Aag~~~~~~~~~~~~~~~G~g~v~~~~v~~~~~~gn~~pr~~~~~~~~in~~g~~~~g~~~~~~~~~~~ 88 (314)
T 2e6f_A 9 LDHVFANPFMNAAGVLCSTEEDLRCMTASSSGALVSKSCTSAPRDGNPEPRYMAFPLGSINSMGLPNLGFDFYLKYASDL 88 (314)
T ss_dssp TTEEESSSEEECTTSSCSSHHHHHHHHHSSCSCEECCCBCSSCBCCSCSCCEEEETTEEEECCCCCBSCHHHHHHHHHHT
T ss_pred CCEecCCCcEECCCCCCCCHHHHHHHHHCCCCEEEeCccCCcccCCCCCCcEEecccceeecCCCCCcCHHHHHHHHHHH
Confidence 467889999999866224789999999999999999999887632110 0 00 011211
Q ss_pred -CCCCCCEEEEEecCChhHHHHHHHHhcC-CCC---eEeeccCCCce
Q psy18231 67 -SPEDTPLVVQFASNNHDDFVRATQYVAP-HCN---GVDLNCGCPQR 108 (540)
Q Consensus 67 -~~~~~~~~~q~~~~~~~~~~~~~~~~~~-~~~---~id~~~gc~~~ 108 (540)
...+.|+++|+.+.+++++.++++.+.+ +.| .|++|++||..
T Consensus 89 ~~~~~~p~~~~i~g~~~~~~~~~a~~~~~~g~d~~~~iein~~~P~~ 135 (314)
T 2e6f_A 89 HDYSKKPLFLSISGLSVEENVAMVRRLAPVAQEKGVLLELNLSCPNV 135 (314)
T ss_dssp CCTTTCCEEEEECCSSHHHHHHHHHHHHHHHHHHCCEEEEECCCCCS
T ss_pred hhcCCCcEEEEeCCCCHHHHHHHHHHHHHhCCCcCceEEEEcCCCCC
Confidence 2247899999999999999999998776 668 99999999985
|
| >2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis} | Back alignment and structure |
|---|
Probab=97.79 E-value=0.0044 Score=55.93 Aligned_cols=106 Identities=10% Similarity=0.119 Sum_probs=70.1
Q ss_pred EEEeCCCCCEEEEee-CCCcEEEEcCCCCeeEEE-eec----C--CcceeEEEE---eeCCCeEEEee------------
Q psy18231 169 HTRFPVDGSYCLTCG-SDKKIKLWNPYRNLLLKT-YGG----H--AHEVNDATA---ACDSSQIASGA------------ 225 (540)
Q Consensus 169 ~v~~spdg~~lat~~-~dg~i~iwd~~~~~~~~~-~~~----h--~~~v~~l~~---sp~~~~l~s~s------------ 225 (540)
+++|.+....+..++ ..++|..||...+..... +.+ . ...+..+.| .|+++++++..
T Consensus 17 ~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~g~~~ 96 (334)
T 2p9w_A 17 DTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFADQSS 96 (334)
T ss_dssp CEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTTSCCS
T ss_pred CccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEccccccccccccc
Confidence 567877555555555 789999999876643333 221 1 114578999 58877777543
Q ss_pred -CCCeEEEEEcC---CCceeEecc--cc-----------CCceeEEEECCCCCEEEEecCC-CcEEE
Q psy18231 226 -SDKSVILWEVT---TGQPVRRWR--EH-----------ASKVTCVKFNEDSSVVISGSQD-NTVMM 274 (540)
Q Consensus 226 -~dg~i~iwd~~---~~~~~~~~~--~h-----------~~~v~~~~~~~~~~~l~s~~~d-g~i~i 274 (540)
.+..|..+|+. +++.+.... .. ......++..++|+..++++.. +.|..
T Consensus 97 ~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~r 163 (334)
T 2p9w_A 97 HGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIAR 163 (334)
T ss_dssp SSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEE
T ss_pred CCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEE
Confidence 26789999998 787665432 11 1247899999999988887765 55433
|
| >2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.77 E-value=0.0032 Score=57.31 Aligned_cols=142 Identities=12% Similarity=0.089 Sum_probs=72.7
Q ss_pred cCCeeEeeeCC-----CeEEEEeCCCCceEE--eeeCCceEEEEEecCCcEEEeecCC-----CeEEEEeccccch--hh
Q psy18231 387 SDHEILTASLD-----CRIRRYDIRTGNLVT--DYVGEPIVDACFTRDCQCILTCSTD-----ECLRLFDKATGEL--LE 452 (540)
Q Consensus 387 ~~~~l~~~~~d-----g~i~iwd~~~~~~~~--~~~~~~i~~~~~sp~~~~l~~~~~d-----g~i~i~d~~~~~~--~~ 452 (540)
...+++.|+.+ ..+.+||+.+.+-.. .+........+..-++++++.|+.+ ..+.+||..+.+- +.
T Consensus 112 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~ 191 (301)
T 2vpj_A 112 GDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVASGVIYCLGGYDGLNILNSVEKYDPHTGHWTNVT 191 (301)
T ss_dssp TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEEETTEEEEECCBCSSCBCCCEEEEETTTTEEEEEC
T ss_pred CCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEEECCEEEEECCCCCCcccceEEEEeCCCCcEEeCC
Confidence 33455555433 357888887765322 2222111111222377888887754 4588999876532 22
Q ss_pred hhccCcCCcceEEEEecCCCCeEEEeeCC-----CcEEEEEecCCcceeEEEecccceeeeEEEEcCCCcEEEeec-C--
Q psy18231 453 EYKGHKSGDFRIECCLDSKDSQIFCGSSD-----GKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC-G-- 524 (540)
Q Consensus 453 ~~~~~~~~v~~~~~~~s~~~~~l~s~s~d-----g~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~-d-- 524 (540)
.+..... ... +...++++++.|+.+ ..+.+||+.+.+-...-..+........+.+ ++++++.|+ +
T Consensus 192 ~~p~~r~--~~~--~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~ 265 (301)
T 2vpj_A 192 PMATKRS--GAG--VALLNDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTPRCYVGATVL--RGRLYAIAGYDGN 265 (301)
T ss_dssp CCSSCCB--SCE--EEEETTEEEEECCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCBCSS
T ss_pred CCCcccc--cce--EEEECCEEEEEeCCCCCcccceEEEEeCCCCcEEECCCCCCcccceeEEEE--CCEEEEEcCcCCC
Confidence 2211111 111 122356777777764 4689999876643222111111111222222 677777777 5
Q ss_pred ---CeeEEEEccc
Q psy18231 525 ---NNVKLWTAEE 534 (540)
Q Consensus 525 ---~~i~iw~~~~ 534 (540)
..+.+||+++
T Consensus 266 ~~~~~v~~yd~~~ 278 (301)
T 2vpj_A 266 SLLSSIECYDPII 278 (301)
T ss_dssp SBEEEEEEEETTT
T ss_pred cccccEEEEcCCC
Confidence 3577888764
|
| >2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.75 E-value=0.0021 Score=58.56 Aligned_cols=92 Identities=9% Similarity=0.060 Sum_probs=48.7
Q ss_pred CeEEEEeCCCCceEEe--eeCCceEEEEEecCCcEEEeecCC-----CeEEEEeccccc--hhhhhccCcCCcceEEEEe
Q psy18231 398 CRIRRYDIRTGNLVTD--YVGEPIVDACFTRDCQCILTCSTD-----ECLRLFDKATGE--LLEEYKGHKSGDFRIECCL 468 (540)
Q Consensus 398 g~i~iwd~~~~~~~~~--~~~~~i~~~~~sp~~~~l~~~~~d-----g~i~i~d~~~~~--~~~~~~~~~~~v~~~~~~~ 468 (540)
..+.+||+.+.+-... +........+..-++++++.|+.+ ..+.+||..+.+ .+..+..... ... +.
T Consensus 173 ~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~--~~~--~~ 248 (302)
T 2xn4_A 173 STVECYNATTNEWTYIAEMSTRRSGAGVGVLNNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCRR--NAG--VC 248 (302)
T ss_dssp CCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSSCCB--SCE--EE
T ss_pred cEEEEEeCCCCcEEECCCCccccccccEEEECCEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCCccc--cCe--EE
Confidence 3578888887643221 211111111122367888888764 368899987653 2222211111 111 12
Q ss_pred cCCCCeEEEeeCCC-----cEEEEEecCCc
Q psy18231 469 DSKDSQIFCGSSDG-----KIYKWQLVDSS 493 (540)
Q Consensus 469 s~~~~~l~s~s~dg-----~i~iwd~~~~~ 493 (540)
..++++++.|+.++ .+.+||..+.+
T Consensus 249 ~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 278 (302)
T 2xn4_A 249 AVNGLLYVVGGDDGSCNLASVEYYNPTTDK 278 (302)
T ss_dssp EETTEEEEECCBCSSSBCCCEEEEETTTTE
T ss_pred EECCEEEEECCcCCCcccccEEEEcCCCCe
Confidence 23677778887654 48888877653
|
| >4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* | Back alignment and structure |
|---|
Probab=97.75 E-value=0.048 Score=55.04 Aligned_cols=379 Identities=11% Similarity=0.048 Sum_probs=188.2
Q ss_pred hhhhcccccceeeeeccccccee-e--eeecCeEEEEeCCCCCEEEEee--CCCcEEEEcCCCCeeEEEeecCCcceeEE
Q psy18231 138 RILYELPKEWSIRVYRPLTVNRE-L--FVLSGLMHTRFPVDGSYCLTCG--SDKKIKLWNPYRNLLLKTYGGHAHEVNDA 212 (540)
Q Consensus 138 ~~~~~~~~~~~i~~~~~~~~~~~-~--~h~~~v~~v~~spdg~~lat~~--~dg~i~iwd~~~~~~~~~~~~h~~~v~~l 212 (540)
.+++.-.....|.+.+.....+. + ........+++.|...+|.... ..+.|...++..... ..+-..-.....+
T Consensus 93 ~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~-~~l~~~~~~P~Gl 171 (628)
T 4a0p_A 93 NLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSER-TTLVPNVGRANGL 171 (628)
T ss_dssp EEEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSC-EEEECSCSSEEEE
T ss_pred EEEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCce-EEEECCCCCcceE
Confidence 34444444455555554332221 1 1234568999998655665544 256777777654433 3332344567899
Q ss_pred EEeeCCCeEEEe-eCCCeEEEEEcCCCceeEeccccCCceeEEEECCCCCEEEEecCCCcEEEEEecCCCCCCcchhhhh
Q psy18231 213 TAACDSSQIASG-ASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQVRCLN 291 (540)
Q Consensus 213 ~~sp~~~~l~s~-s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 291 (540)
++.+++..|..+ ...+.|...|+..... ..+.........+++.. +..+++-...+.|...|..+++........+
T Consensus 172 alD~~~~~LY~aD~~~~~I~~~d~dG~~~-~v~~~~l~~P~glav~~-~~ly~tD~~~~~I~~~dk~tg~~~~~l~~~~- 248 (628)
T 4a0p_A 172 TIDYAKRRLYWTDLDTNLIESSNMLGLNR-EVIADDLPHPFGLTQYQ-DYIYWTDWSRRSIERANKTSGQNRTIIQGHL- 248 (628)
T ss_dssp EEETTTTEEEEEETTTTEEEEEETTSCSC-EEEEECCSCEEEEEEET-TEEEEEETTTTEEEEEETTTCCSCEEEECSC-
T ss_pred EEccccCEEEEEECCCCEEEEEcCCCCce-EEeeccCCCceEEEEEC-CEEEEecCCCCEEEEEECCCCCceEEEecCC-
Confidence 999976666555 4567899999865433 33444445566788865 4455555557888888877665322211100
Q ss_pred HhhhhcCCceeEEEEeecccc-----cccccCceeeE-------EEeeeecccccc-eee-eeeccceeEEEeeccccee
Q psy18231 292 EALKEARDSITSVHSLVKSTK-----NHLSNGLLTKL-------VFAFRCKYLNGL-LSG-VLMSTQHLMVLLDFLGSTQ 357 (540)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~-------~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~ 357 (540)
.....+........ .....+..... .+...|...... ... ........+ ++.......
T Consensus 249 -------~~p~~i~v~~~~~q~~~n~C~~~ng~C~~~C~~~~~~~~~C~C~~g~~l~~d~~~C~~~~~~L-l~s~~~~i~ 320 (628)
T 4a0p_A 249 -------DYVMDILVFHSSRQSGWNECASSNGHCSHLCLAVPVGGFVCGCPAHYSLNADNRTCSAPTTFL-LFSQKSAIN 320 (628)
T ss_dssp -------CSCCEEEEECGGGSCCCCTTTTTGGGCSSEEEEETTTEEEEECSTTCEECTTSSCEECCSSEE-EEEETTEEE
T ss_pred -------CCcceeeeeeecccccceEeccCCCCcchhhhcCCCCCeeEEcCCCcEecccCCcCcccccee-eeeccceEE
Confidence 01111111111000 00000000000 011111110000 000 001111122 222111111
Q ss_pred cccccccccccchhhhhhcccccEEEEEecC--CeeEee-eCCCeEEEEeCCCCceEEeeeC--------CceEEEEEec
Q psy18231 358 IGDVTPISIHNSCFQALKEARDSITSVHVSD--HEILTA-SLDCRIRRYDIRTGNLVTDYVG--------EPIVDACFTR 426 (540)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~--~~l~~~-~~dg~i~iwd~~~~~~~~~~~~--------~~i~~~~~sp 426 (540)
...+.... ........ ..-..+.++++++ +.|+.+ ...+.|+.++++.......+.. .....+++..
T Consensus 321 ~i~l~~~~-~~~~~l~~-~~~~~~~~ld~d~~~~~iy~sD~~~~~I~r~~~~g~~~~~v~~~~~~~~~~~~~p~glAvD~ 398 (628)
T 4a0p_A 321 RMVIDEQQ-SPDIILPI-HSLRNVRAIDYDPLDKQLYWIDSRQNMIRKAQEDGSQGFTVVVSSVPSQNLEIQPYDLSIDI 398 (628)
T ss_dssp EECCCTTC-CCCEECCC-TTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC--------CCCEEEEEEET
T ss_pred EEeccccc-CceEEEEe-hhcCCceEEEEecCCCeEEEEecCcceEEEEEcCCCCceEEEEcccccccccCCcceEEeec
Confidence 11100000 00000011 1124577888887 444444 4567888888775433222221 3678999998
Q ss_pred CCc-EEEeecCCCeEEEEeccccchhhhhc-cCcCCcceEEEEecCCCCeEEEee-CCC--cEEEEEecCCcceeEEEec
Q psy18231 427 DCQ-CILTCSTDECLRLFDKATGELLEEYK-GHKSGDFRIECCLDSKDSQIFCGS-SDG--KIYKWQLVDSSQISTLIHS 501 (540)
Q Consensus 427 ~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~v~~~~~~~s~~~~~l~s~s-~dg--~i~iwd~~~~~~~~~~~~~ 501 (540)
.++ +..+-+..+.|.+.++. |+....+. ........+ ++.|...+|+... ... .|...++ +|+....+..
T Consensus 399 ~~~nLY~td~~~~~I~v~~~~-G~~~~~l~~~~l~~Pr~i--avdp~~g~ly~tD~g~~~~~I~r~~~-dG~~~~~l~~- 473 (628)
T 4a0p_A 399 YSRYIYWTCEATNVINVTRLD-GRSVGVVLKGEQDRPRAV--VVNPEKGYMYFTNLQERSPKIERAAL-DGTEREVLFF- 473 (628)
T ss_dssp TTTEEEEEETTTTEEEEEETT-SCEEEEEEECTTCCEEEE--EEETTTTEEEEEEEETTEEEEEEEET-TSCSCEEEEC-
T ss_pred cCCeEEEEcCCCCEEEEEECC-CCeEEEEEeCCCCceeeE--EEecCCCeEEEeecCCCCCeEEEEeC-CCCCcEEEEe-
Confidence 755 45566678899999875 44333332 222333445 7888444444433 222 4555554 4555555542
Q ss_pred ccceeeeEEEEcCCCcEEEeec--CCeeEEEEcccc
Q psy18231 502 VGKAVVNSLCSHPTRKHIMSAC--GNNVKLWTAEED 535 (540)
Q Consensus 502 ~~~~~v~~l~~s~d~~~l~s~~--d~~i~iw~~~~~ 535 (540)
..-...+.|+++++++.|..+. .+.|...+++..
T Consensus 474 ~~l~~P~gla~D~~~~~LYw~D~~~~~I~~~~~dG~ 509 (628)
T 4a0p_A 474 SGLSKPIALALDSRLGKLFWADSDLRRIESSDLSGA 509 (628)
T ss_dssp SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred ccCCCccEEEEeCCCCEEEEEeCCCCEEEEEeCCCC
Confidence 2345679999999887777776 578888887543
|
| >4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* | Back alignment and structure |
|---|
Probab=97.73 E-value=0.035 Score=56.01 Aligned_cols=229 Identities=8% Similarity=-0.064 Sum_probs=135.2
Q ss_pred EEEEeeCCCcEEEEcCCCCeeEEEeec-CCcceeEEEEeeCCCeEE-EeeCCCeEEEEEcCCCceeEeccccCCceeEEE
Q psy18231 178 YCLTCGSDKKIKLWNPYRNLLLKTYGG-HAHEVNDATAACDSSQIA-SGASDKSVILWEVTTGQPVRRWREHASKVTCVK 255 (540)
Q Consensus 178 ~lat~~~dg~i~iwd~~~~~~~~~~~~-h~~~v~~l~~sp~~~~l~-s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~ 255 (540)
+|+.+ ....|+..++.+......+.- .-..+..++|++.+..|. +-..++.|..+++........+.........++
T Consensus 8 ~Ll~s-~~~~I~~i~l~~~~~~~~~~~~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~GlA 86 (628)
T 4a0p_A 8 FLLFS-RRADIRRISLETNNNNVAIPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEGMA 86 (628)
T ss_dssp EEEEE-ETTEEEEEESSCTTCEEECCCCSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEE
T ss_pred EEEEE-eCCcEEEEECCCCCcceEEEcCCCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcceEE
Confidence 44443 467899999886654433321 234678999999665555 555678999999865544333333334577888
Q ss_pred ECCCCC-EEEEecCCCcEEEEEecCCCCCCcchhhhhHhhhhcCCceeEEEEeecccccccccCceeeEEEeeeeccccc
Q psy18231 256 FNEDSS-VVISGSQDNTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNG 334 (540)
Q Consensus 256 ~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (540)
+.+.+. +.++-...+.|.+.++.......+
T Consensus 87 vD~~~~~LY~tD~~~~~I~v~~~dG~~~~~l------------------------------------------------- 117 (628)
T 4a0p_A 87 VDWLGKNLYWADTGTNRIEVSKLDGQHRQVL------------------------------------------------- 117 (628)
T ss_dssp EETTTTEEEEEETTTTEEEEEETTSTTCEEE-------------------------------------------------
T ss_pred EEeCCCEEEEEECCCCEEEEEecCCCcEEEE-------------------------------------------------
Confidence 887544 445555567788888764431000
Q ss_pred ceeeeeeccceeEEEeecccceecccccccccccchhhhhhcccccEEEEEecC--CeeEeee--CCCeEEEEeCCCCce
Q psy18231 335 LLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEARDSITSVHVSD--HEILTAS--LDCRIRRYDIRTGNL 410 (540)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~--~~l~~~~--~dg~i~iwd~~~~~~ 410 (540)
....-.....|+++| ..|..+. ..+.|...+++....
T Consensus 118 ---------------------------------------~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~ 158 (628)
T 4a0p_A 118 ---------------------------------------VWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSER 158 (628)
T ss_dssp ---------------------------------------ECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSC
T ss_pred ---------------------------------------EeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCce
Confidence 001112346777776 4555544 256788888775443
Q ss_pred EEeeeC-CceEEEEEecCCcEEEee-cCCCeEEEEeccccchhhhhccCcCCcceEEEEecCCCCeEEEeeCCCcEEEEE
Q psy18231 411 VTDYVG-EPIVDACFTRDCQCILTC-STDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQ 488 (540)
Q Consensus 411 ~~~~~~-~~i~~~~~sp~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~s~~~~~l~s~s~dg~i~iwd 488 (540)
.....+ .....++++++++.|+.+ ...+.|..+|+..... ..+.........+ ++.. +..+++-...+.|...|
T Consensus 159 ~~l~~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~-~v~~~~l~~P~gl--av~~-~~ly~tD~~~~~I~~~d 234 (628)
T 4a0p_A 159 TTLVPNVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNR-EVIADDLPHPFGL--TQYQ-DYIYWTDWSRRSIERAN 234 (628)
T ss_dssp EEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEEECCSCEEEE--EEET-TEEEEEETTTTEEEEEE
T ss_pred EEEECCCCCcceEEEccccCEEEEEECCCCEEEEEcCCCCce-EEeeccCCCceEE--EEEC-CEEEEecCCCCEEEEEE
Confidence 322332 567899999976655554 4578899999865433 2232222222334 4443 34444444578898888
Q ss_pred ecCCcceeEEE
Q psy18231 489 LVDSSQISTLI 499 (540)
Q Consensus 489 ~~~~~~~~~~~ 499 (540)
..+++....+.
T Consensus 235 k~tg~~~~~l~ 245 (628)
T 4a0p_A 235 KTSGQNRTIIQ 245 (628)
T ss_dssp TTTCCSCEEEE
T ss_pred CCCCCceEEEe
Confidence 77776655554
|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.71 E-value=0.02 Score=59.24 Aligned_cols=117 Identities=9% Similarity=-0.044 Sum_probs=73.4
Q ss_pred eecCeEEEEeCCCCCEEE-EeeCCCcEEEEcCCCC----eeEEEeecCCcceeEEEEeeCCC-eEEEeeCCCeEEEEEcC
Q psy18231 163 VLSGLMHTRFPVDGSYCL-TCGSDKKIKLWNPYRN----LLLKTYGGHAHEVNDATAACDSS-QIASGASDKSVILWEVT 236 (540)
Q Consensus 163 h~~~v~~v~~spdg~~la-t~~~dg~i~iwd~~~~----~~~~~~~~h~~~v~~l~~sp~~~-~l~s~s~dg~i~iwd~~ 236 (540)
....+..++|++....|+ +-...+.|+.+++... .....+.........|++.+.+. ++++-...+.|.+.++.
T Consensus 422 ~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ld 501 (791)
T 3m0c_C 422 NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTK 501 (791)
T ss_dssp SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred CCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCcEEEEecCCCeEEEEeCC
Confidence 456678999998655555 4455678888887642 22333333445677899998665 45555667899999986
Q ss_pred CCceeEeccccCCceeEEEECCCCCEEEEecC--CCcEEEEEecC
Q psy18231 237 TGQPVRRWREHASKVTCVKFNEDSSVVISGSQ--DNTVMMWDVKS 279 (540)
Q Consensus 237 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~--dg~i~iwd~~~ 279 (540)
.......+.........|++.|.+.+|+.+.. .+.|...++..
T Consensus 502 G~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG 546 (791)
T 3m0c_C 502 GVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNG 546 (791)
T ss_dssp SSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTS
T ss_pred CCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCC
Confidence 54433333334456889999997555555432 25677666654
|
| >3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.70 E-value=0.0063 Score=55.50 Aligned_cols=101 Identities=12% Similarity=0.114 Sum_probs=53.9
Q ss_pred CEEEEeeC--CCcEEEEcCCCCeeEEE--eecCCcceeEEEEeeCCCeEEEeeCC----CeEEEEEcCCCceeEe--ccc
Q psy18231 177 SYCLTCGS--DKKIKLWNPYRNLLLKT--YGGHAHEVNDATAACDSSQIASGASD----KSVILWEVTTGQPVRR--WRE 246 (540)
Q Consensus 177 ~~lat~~~--dg~i~iwd~~~~~~~~~--~~~h~~~v~~l~~sp~~~~l~s~s~d----g~i~iwd~~~~~~~~~--~~~ 246 (540)
.+++.|+. ...+.+||..+++-... +......- ++ ..-++..++.|+.+ ..+.+||..+++-... +..
T Consensus 13 ~l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~-~~-~~~~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~ 90 (306)
T 3ii7_A 13 YRIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDA-AC-VFWDNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPT 90 (306)
T ss_dssp EEEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSC-EE-EEETTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSS
T ss_pred eEEEEeCCCCCceEEEecCCCCCEecCCCCCccccee-EE-EEECCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCc
Confidence 34556654 35788999887653321 11111111 22 22367777888765 6788899887754322 221
Q ss_pred cCCceeEEEECCCCCEEEEecCC------CcEEEEEecCCC
Q psy18231 247 HASKVTCVKFNEDSSVVISGSQD------NTVMMWDVKSRS 281 (540)
Q Consensus 247 h~~~v~~~~~~~~~~~l~s~~~d------g~i~iwd~~~~~ 281 (540)
....-..+.+ ++..++.|+.+ ..+.+||+.+.+
T Consensus 91 ~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d~~~~~ 129 (306)
T 3ii7_A 91 PRDSLAACAA--EGKIYTSGGSEVGNSALYLFECYDTRTES 129 (306)
T ss_dssp CCBSCEEEEE--TTEEEEECCBBTTBSCCCCEEEEETTTTE
T ss_pred cccceeEEEE--CCEEEEECCCCCCCcEeeeEEEEeCCCCc
Confidence 1112222222 56677777654 346677766543
|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A | Back alignment and structure |
|---|
Probab=97.65 E-value=0.00014 Score=74.75 Aligned_cols=223 Identities=9% Similarity=0.019 Sum_probs=120.1
Q ss_pred CCcEEEEcCCCCeeEEEeecCCcceeEEEEeeCCCeEEEe-eCCCeEEEEEcCC----CceeEeccccCCceeEEEECCC
Q psy18231 185 DKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASG-ASDKSVILWEVTT----GQPVRRWREHASKVTCVKFNED 259 (540)
Q Consensus 185 dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~-s~dg~i~iwd~~~----~~~~~~~~~h~~~v~~~~~~~~ 259 (540)
.+.|+..++.+.+....+.. ...+..++|.+.+..|+.+ ...+.|..+++.. ......+.........+++.+.
T Consensus 385 ~~~I~~id~~~~~~~~~~~~-~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~ 463 (699)
T 1n7d_A 385 RHEVRKMTLDRSEYTSLIPN-LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWI 463 (699)
T ss_dssp TTC-CEECTTSCCEECCSCC-CTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCS
T ss_pred ccceEEEeCCCCcceeeecc-CcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEee
Confidence 46788888876655444332 3456789999876666655 4567899999865 2222222222234566788754
Q ss_pred -CCEEEEecCCCcEEEEEecCCCCCCcchhhhhHhhhhcCCceeEEEEeecccccccccCceeeEEEeeeecccccceee
Q psy18231 260 -SSVVISGSQDNTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSG 338 (540)
Q Consensus 260 -~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (540)
++++++-...+.|.++++.......+.
T Consensus 464 ~g~LY~tD~~~~~I~v~d~dg~~~~~l~---------------------------------------------------- 491 (699)
T 1n7d_A 464 HSNIYWTDSVLGTVSVADTKGVKRKTLF---------------------------------------------------- 491 (699)
T ss_dssp SSBCEECCTTTSCEEEEBSSSCCEEEEC----------------------------------------------------
T ss_pred CCcEEEEeccCCeEEEEecCCCceEEEE----------------------------------------------------
Confidence 444455455677888876543310000
Q ss_pred eeeccceeEEEeecccceecccccccccccchhhhhhcccccEEEEEecC--CeeEeeeC--CCeEEEEeCCCCceEEee
Q psy18231 339 VLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEARDSITSVHVSD--HEILTASL--DCRIRRYDIRTGNLVTDY 414 (540)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~--~~l~~~~~--dg~i~iwd~~~~~~~~~~ 414 (540)
.........|+++| ..|+.+.. .+.|..+++........+
T Consensus 492 ------------------------------------~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l~ 535 (699)
T 1n7d_A 492 ------------------------------------REQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLV 535 (699)
T ss_dssp ------------------------------------CCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEES
T ss_pred ------------------------------------eCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEEE
Confidence 00001223455555 33433332 266777776533221111
Q ss_pred e--CCceEEEEEecCCcEE-EeecCCCeEEEEeccccchhhhhcc--CcCCcceEEEEecCCCCeEEEeeCCCcEEEEEe
Q psy18231 415 V--GEPIVDACFTRDCQCI-LTCSTDECLRLFDKATGELLEEYKG--HKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQL 489 (540)
Q Consensus 415 ~--~~~i~~~~~sp~~~~l-~~~~~dg~i~i~d~~~~~~~~~~~~--~~~~v~~~~~~~s~~~~~l~s~s~dg~i~iwd~ 489 (540)
. ......++|+|++..| ++-+..+.|..+|+........+.. .......+ ++..+ .++++....+.|..++.
T Consensus 536 ~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~~~P~gl--avd~~-~lywtd~~~~~V~~~d~ 612 (699)
T 1n7d_A 536 TENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSL--AVFED-KVFWTDIINEAIFSANR 612 (699)
T ss_dssp CSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSCCEEECCCSSSCSSCCCC--EEETT-EEEEECSTTTCEEEEET
T ss_pred eCCCCCccEEEEeccCCEEEEEecCCCeEEEEccCCCceEEEEecCCcCCCceEe--EEECC-EEEEEeCCCCeEEEEEc
Confidence 1 2356789999875544 4555678899999864322211111 11112233 34333 44555566788999998
Q ss_pred cCCcceeEEE
Q psy18231 490 VDSSQISTLI 499 (540)
Q Consensus 490 ~~~~~~~~~~ 499 (540)
.+++.+..+.
T Consensus 613 ~~G~~~~~i~ 622 (699)
T 1n7d_A 613 LTGSDVNLLA 622 (699)
T ss_dssp TTEEEEECCC
T ss_pred cCCCceEEee
Confidence 7787766664
|
| >2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis} | Back alignment and structure |
|---|
Probab=97.65 E-value=0.003 Score=56.95 Aligned_cols=151 Identities=8% Similarity=0.073 Sum_probs=101.4
Q ss_pred EEEEecC--CeeEeee-CCCeEEEEeCCCCceEEe-eeC--------CceEEEEE---ecCCcEEEeec-----------
Q psy18231 382 TSVHVSD--HEILTAS-LDCRIRRYDIRTGNLVTD-YVG--------EPIVDACF---TRDCQCILTCS----------- 435 (540)
Q Consensus 382 ~~l~~~~--~~l~~~~-~dg~i~iwd~~~~~~~~~-~~~--------~~i~~~~~---sp~~~~l~~~~----------- 435 (540)
.++.|++ ..+..++ ..++|..||...+..... +.+ ..+..+.| .|+++++++..
T Consensus 16 E~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~g~~ 95 (334)
T 2p9w_A 16 EDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFADQS 95 (334)
T ss_dssp SCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTTSCC
T ss_pred cCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccccccccccc
Confidence 4678876 6666666 789999999986543322 222 13678999 68888887643
Q ss_pred --CCCeEEEEecc---ccchhhhhc--cCc---------CCcceEEEEecCCCCeEEEeeCC-CcEEEEEecCCcceeEE
Q psy18231 436 --TDECLRLFDKA---TGELLEEYK--GHK---------SGDFRIECCLDSKDSQIFCGSSD-GKIYKWQLVDSSQISTL 498 (540)
Q Consensus 436 --~dg~i~i~d~~---~~~~~~~~~--~~~---------~~v~~~~~~~s~~~~~l~s~s~d-g~i~iwd~~~~~~~~~~ 498 (540)
.+..|..||+. +++.+.... ... ..-....++..++|+..++++.- +.|...+. +++.+..+
T Consensus 96 ~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~p-dG~~~~~~ 174 (334)
T 2p9w_A 96 SHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSA-DGKTVSTF 174 (334)
T ss_dssp SSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECT-TSCCEEEE
T ss_pred cCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeC-CCCEEeee
Confidence 26789999998 776653222 100 11123445899999999988888 87776663 44444433
Q ss_pred Eec----ccceeeeEEEEcCCCcEEEeec-CCeeEEEEcc
Q psy18231 499 IHS----VGKAVVNSLCSHPTRKHIMSAC-GNNVKLWTAE 533 (540)
Q Consensus 499 ~~~----~~~~~v~~l~~s~d~~~l~s~~-d~~i~iw~~~ 533 (540)
... ......+.++++|+|+.|++.. ++.|.-+|+.
T Consensus 175 ~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~ 214 (334)
T 2p9w_A 175 AWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVS 214 (334)
T ss_dssp EECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECS
T ss_pred eecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCC
Confidence 211 1122367999999999999988 9999999865
|
| >3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A* | Back alignment and structure |
|---|
Probab=97.64 E-value=0.04 Score=51.26 Aligned_cols=102 Identities=13% Similarity=0.058 Sum_probs=60.5
Q ss_pred cCeEEEEeCCCCCEEEEeeCCCcEEEEcCCCCe-eEEEee---cCCcceeEEEEeeC---CCeEEEeeC----C----Ce
Q psy18231 165 SGLMHTRFPVDGSYCLTCGSDKKIKLWNPYRNL-LLKTYG---GHAHEVNDATAACD---SSQIASGAS----D----KS 229 (540)
Q Consensus 165 ~~v~~v~~spdg~~lat~~~dg~i~iwd~~~~~-~~~~~~---~h~~~v~~l~~sp~---~~~l~s~s~----d----g~ 229 (540)
.....++|.|||++ +++..+|.|++++ .+++ .+..+. ........++++|+ +..|..+.. + +.
T Consensus 29 ~~P~~ia~~pdG~l-~V~e~~g~I~~~d-~~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~ 106 (354)
T 3a9g_A 29 EVPWSIAPLGGGRY-LVTERPGRLVLIS-PSGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNR 106 (354)
T ss_dssp SCEEEEEEEETTEE-EEEETTTEEEEEC-SSCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEE
T ss_pred CCCeEEEEcCCCeE-EEEeCCCEEEEEe-CCCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceE
Confidence 45678999999985 4456679999997 4554 222221 12356789999997 444444332 3 56
Q ss_pred EEEEEcCCC--c-----ee-Eecc-ccCCceeEEEECCCCCEEEEecC
Q psy18231 230 VILWEVTTG--Q-----PV-RRWR-EHASKVTCVKFNEDSSVVISGSQ 268 (540)
Q Consensus 230 i~iwd~~~~--~-----~~-~~~~-~h~~~v~~~~~~~~~~~l~s~~~ 268 (540)
|..|+...+ . .+ ..+. ........++|.|||.+.++.+.
T Consensus 107 v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~ 154 (354)
T 3a9g_A 107 VIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGD 154 (354)
T ss_dssp EEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCC
T ss_pred EEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECC
Confidence 777776544 1 11 1122 11123467888888876666443
|
| >3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A* | Back alignment and structure |
|---|
Probab=97.63 E-value=0.07 Score=53.75 Aligned_cols=117 Identities=6% Similarity=-0.122 Sum_probs=73.9
Q ss_pred cCeEEEEeCCCCCEEE-EeeCCCcEEEEcCCCCeeEEEeecCCcceeEEEEeeCCCeEEEeeC--CCeEEEEEcCCCcee
Q psy18231 165 SGLMHTRFPVDGSYCL-TCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGAS--DKSVILWEVTTGQPV 241 (540)
Q Consensus 165 ~~v~~v~~spdg~~la-t~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~--dg~i~iwd~~~~~~~ 241 (540)
.....+++.+.++.|+ +-...+.|.+.++........+...-.....|++.|.+.+|+.+.. .+.|...++......
T Consensus 84 ~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~ 163 (619)
T 3s94_A 84 LSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRF 163 (619)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCE
T ss_pred CCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCCEEEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCceE
Confidence 4678899999666555 4455789999998654333333334456778999997665555443 356766676433222
Q ss_pred EeccccCCceeEEEECCCCCEEEEe-cCCCcEEEEEecCCC
Q psy18231 242 RRWREHASKVTCVKFNEDSSVVISG-SQDNTVMMWDVKSRS 281 (540)
Q Consensus 242 ~~~~~h~~~v~~~~~~~~~~~l~s~-~~dg~i~iwd~~~~~ 281 (540)
......-.....+++++++..|+.+ ...+.|...|+....
T Consensus 164 ~l~~~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~ 204 (619)
T 3s94_A 164 IIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTN 204 (619)
T ss_dssp EEECSSCSSEEEEEEETTTTEEEEEETTTCCEEEESSSCCE
T ss_pred EEEeCCCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCCc
Confidence 2232334567899999876655554 445678888876543
|
| >1ep3_A Dihydroorotate dehydrogenase B (PYRD subunit); heterotetramer, alpha-beta barrel, beta sandwich, FAD domain alpha/beta NADP domain; HET: FMN FAD; 2.10A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ep2_A* 1ep1_A* | Back alignment and structure |
|---|
Probab=97.58 E-value=4.4e-05 Score=70.14 Aligned_cols=97 Identities=14% Similarity=0.228 Sum_probs=67.7
Q ss_pred cceecCCceEEec-cCCCCCHHHHHHHHHcCCCEEEee---------------------eeecccccccchhhc-c-ccc
Q psy18231 10 RSTLLKNLKHCDS-TLWTSKLNFRQLVRSHNVDLCFTP---------------------MIIADSFIKSSKARN-N-EFS 65 (540)
Q Consensus 10 ~~~~~~~~~~~ap-~~~~~~~~~r~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~-~-~~~ 65 (540)
.++.+++|+++|| |.+.+. +|++.+.+.|++...++ |+++-.+.+...... . .+.
T Consensus 12 ~g~~l~npi~~aag~~~~~~-~~~~~~~~~g~G~~~~~si~~~p~~g~~~p~l~~~~~g~~~~~g~~~~~~~~~~~~~~~ 90 (311)
T 1ep3_A 12 PGLDLKNPIIPASGCFGFGE-EYAKYYDLNKLGSIMVKATTLHPRFGNPTPRVAETASGMLNAIGLQNPGLEVIMTEKLP 90 (311)
T ss_dssp TTEEESSSEEECTTSSTTST-TGGGTSCGGGSSCEEEEEECSSCBCCCCSCCEEEETTEEEECCCCCBCCHHHHHHTHHH
T ss_pred CCEECCCCcEECCCCCCCCH-HHHHHHHhcCCCEEEeCeeccCccCCCCCCeEEECCcccccccCCCCcCHHHHHHHHHH
Confidence 3678899999999 999875 67777644554445433 444444433332221 1 111
Q ss_pred -c-C-CCCCCEEEEEecCChhHHHHHHHHhc--CCCCeEeeccCCCc
Q psy18231 66 -T-S-PEDTPLVVQFASNNHDDFVRATQYVA--PHCNGVDLNCGCPQ 107 (540)
Q Consensus 66 -~-~-~~~~~~~~q~~~~~~~~~~~~~~~~~--~~~~~id~~~gc~~ 107 (540)
. . ..+.|+++|+.+.+++++.++++.+. .++|.|++|.+||.
T Consensus 91 ~~~~~~~~~p~~v~l~~~~~~~~~~~a~~~~~~~g~d~iei~~~~p~ 137 (311)
T 1ep3_A 91 WLNENFPELPIIANVAGSEEADYVAVCAKIGDAANVKAIELNISCPN 137 (311)
T ss_dssp HHHHHCTTSCEEEEECCSSHHHHHHHHHHHTTSTTEEEEEEECCSEE
T ss_pred HHHhcCCCCcEEEEEcCCCHHHHHHHHHHHhccCCCCEEEEeCCCCC
Confidence 1 1 22789999999999999999999877 68999999999997
|
| >1f76_A Dihydroorotate dehydrogenase; monomer, alpha-beta-barrel, FMN binding domain, orotate complex, oxidoreductase; HET: MSE FMN ORO; 2.50A {Bacteria} SCOP: c.1.4.1 | Back alignment and structure |
|---|
Probab=97.56 E-value=0.00016 Score=66.95 Aligned_cols=95 Identities=12% Similarity=0.067 Sum_probs=70.4
Q ss_pred ceecCCceEEeccCCCCCHH-HHHHHHHcCCCEEEeeeeecccccccch------------------------hhccccc
Q psy18231 11 STLLKNLKHCDSTLWTSKLN-FRQLVRSHNVDLCFTPMIIADSFIKSSK------------------------ARNNEFS 65 (540)
Q Consensus 11 ~~~~~~~~~~ap~~~~~~~~-~r~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------~~~~~~~ 65 (540)
++.+++++++|+ |+++.+ |++.+++.|++++.+++++......+.. .....+.
T Consensus 51 g~~l~npi~~aa--g~~~~~~~~~~~a~~G~g~i~~~~~~~~~~~g~~~pr~~~~~~d~~~in~~g~~~~g~~~~~~~~~ 128 (336)
T 1f76_A 51 GLTFKNPLGLAA--GLDKDGECIDALGAMGFGSIEIGTVTPRPQPGNDKPRLFRLVDAEGLINRMGFNNLGVDNLVENVK 128 (336)
T ss_dssp TEEESSSEEECT--TSSTTCCCHHHHHHTTCSEEEEEEECSSCBCCSCSCCEEEETTTTEEEECCCCCBCCHHHHHHHHH
T ss_pred CEEcCCCcEeCc--ccCCcHHHHHHHHHcCccEEEeCCCCCCCCCCCCCcceeeccccceeeecCCCCCcCHHHHHHHHH
Confidence 567899999995 467766 9999999999999999998653211100 0011111
Q ss_pred cCCCCCCEEEEEecCC-------hhHHHHHHHHhcCCCCeEeeccCCCc
Q psy18231 66 TSPEDTPLVVQFASNN-------HDDFVRATQYVAPHCNGVDLNCGCPQ 107 (540)
Q Consensus 66 ~~~~~~~~~~q~~~~~-------~~~~~~~~~~~~~~~~~id~~~gc~~ 107 (540)
....+.|+++|+.++. ++++.++++.+.++.|.|++|++||.
T Consensus 129 ~~~~~~~~~v~i~~~~~~~i~~~~~~~~~aa~~~~~g~d~iein~~sP~ 177 (336)
T 1f76_A 129 KAHYDGVLGINIGKNKDTPVEQGKDDYLICMEKIYAYAGYIAINISSPN 177 (336)
T ss_dssp HCCCCSEEEEEECCCTTSCGGGTHHHHHHHHHHHGGGCSEEEEECCCSS
T ss_pred hcccCCcEEEEecCCCCCcccccHHHHHHHHHHHhccCCEEEEEccCCC
Confidence 1123468999999988 88999999877778999999999996
|
| >1vcf_A Isopentenyl-diphosphate delta-isomerase; TIM barrel, structural genomics, riken structural genomics/P initiative, RSGI; HET: FMN; 2.60A {Thermus thermophilus} SCOP: c.1.4.1 PDB: 1vcg_A* 3dh7_A* | Back alignment and structure |
|---|
Probab=97.55 E-value=5.1e-05 Score=69.99 Aligned_cols=90 Identities=11% Similarity=0.087 Sum_probs=60.9
Q ss_pred ceecCCceEEeccCCCCCH------HHHHHHHHcCCCEEEeeeeecccccc-cchhhccccccCCCCCCEE-----EEEe
Q psy18231 11 STLLKNLKHCDSTLWTSKL------NFRQLVRSHNVDLCFTPMIIADSFIK-SSKARNNEFSTSPEDTPLV-----VQFA 78 (540)
Q Consensus 11 ~~~~~~~~~~ap~~~~~~~------~~r~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-----~q~~ 78 (540)
+..+++++++|||++.++. ++|++|+++|+.+.+++|.++ +.+ +.+...+ +...+.+.|++ .|+.
T Consensus 54 g~~l~~P~~iapm~g~~~~~~~~~~~la~~a~~~G~~~~~~~~~~~--le~~~~~~~~q-l~~~~~d~pv~~~~~~~q~~ 130 (332)
T 1vcf_A 54 GKTLKAPFLIGAMTGGEENGERINLALAEAAEALGVGMMLGSGRIL--LERPEALRSFR-VRKVAPKALLIANLGLAQLR 130 (332)
T ss_dssp TEEESSSEEECCCC---CCHHHHHHHHHHHHHHHTCEEEEEECHHH--HHCTTTHHHHC-CTTTCSSSCEEEEEEGGGGG
T ss_pred CcccCCceEEeccccCCcchhHHHHHHHHHHHHcCCCEEeCCchhc--ccCCCccceEE-eeccCCCceeecccChhhhh
Confidence 3456889999999998864 999999999999999999775 222 1222222 22223467775 6778
Q ss_pred cCChhHHHHHHHHhcCCCCeEeecc
Q psy18231 79 SNNHDDFVRATQYVAPHCNGVDLNC 103 (540)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~id~~~ 103 (540)
+.+++.+.++++....+...+++|+
T Consensus 131 ~~~~~~~~~a~~~~~~~a~~i~~n~ 155 (332)
T 1vcf_A 131 RYGRDDLLRLVEMLEADALAFHVNP 155 (332)
T ss_dssp TCCHHHHHHHHHHHTCSEEEEECCH
T ss_pred ccChHHHHHHHhhcCCCceeeccch
Confidence 8889999998887644334566664
|
| >1kbi_A Cytochrome B2, L-LCR; flavocytochrome B2, electron transfer, oxidoreductase; HET: HEM FMN; 2.30A {Saccharomyces cerevisiae} SCOP: c.1.4.1 d.120.1.1 PDB: 1fcb_A* 1lco_A* 1ldc_A* 1sze_A* 2oz0_A* 1szf_A* 1szg_A* 1ltd_A* 1kbj_A* 1qcw_A* 3ks0_A* | Back alignment and structure |
|---|
Probab=97.54 E-value=0.00013 Score=70.88 Aligned_cols=88 Identities=7% Similarity=-0.005 Sum_probs=67.4
Q ss_pred ceecCCceEEeccCC---C----CCHHHHHHHHH--cCCCEEEeeeeec-ccccccchhhccccccC-CCCCCEEEEEe-
Q psy18231 11 STLLKNLKHCDSTLW---T----SKLNFRQLVRS--HNVDLCFTPMIIA-DSFIKSSKARNNEFSTS-PEDTPLVVQFA- 78 (540)
Q Consensus 11 ~~~~~~~~~~ap~~~---~----~~~~~r~~~~~--~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~q~~- 78 (540)
+..+++++++|||++ . +++++|++|++ +|+.+++++|.+. .+.+.. .. +.+.|..+|++
T Consensus 185 G~~l~~Pi~iAPma~~~l~~~~~~e~alaraA~~~~~G~~~~~s~~a~~s~e~v~~---------~~~~~~~~~~~QLy~ 255 (511)
T 1kbi_A 185 GSHVDVPFYVSATALCKLGNPLEGEKDVARGCGQGVTKVPQMISTLASCSPEEIIE---------AAPSDKQIQWYQLYV 255 (511)
T ss_dssp TEEESSSEEECCCSCGGGTCTTTTHHHHHHHHHSSSSCCCEEECTTCSSCHHHHHH---------TCCCSSCCEEEEECC
T ss_pred CccCCCCeEeccchhccccChhhHHHHHHHHHHHhCCCeeEEeCCcccCCHHHHHh---------hcCCCCCCeEEEEee
Confidence 445688999999997 4 58999999999 9999999999332 222211 12 34578999998
Q ss_pred cCChhHHHHHHHHhcC-CCCeEeeccCCCc
Q psy18231 79 SNNHDDFVRATQYVAP-HCNGVDLNCGCPQ 107 (540)
Q Consensus 79 ~~~~~~~~~~~~~~~~-~~~~id~~~gc~~ 107 (540)
+.+++.+.++++.... +++.|.++.+||+
T Consensus 256 ~~d~~~~~~~~~rae~aG~~al~itvd~p~ 285 (511)
T 1kbi_A 256 NSDRKITDDLVKNVEKLGVKALFVTVDAPS 285 (511)
T ss_dssp CSSHHHHHHHHHHHHHHTCSCEEEECSCSS
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEEeCCCCC
Confidence 8889988888877665 8888888888887
|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A | Back alignment and structure |
|---|
Probab=97.53 E-value=0.00049 Score=70.64 Aligned_cols=115 Identities=10% Similarity=-0.025 Sum_probs=67.9
Q ss_pred ecCeEEEEeCCCCCEEEEee-CCCcEEEEcCCC----CeeEEEeecCCcceeEEEEeeC-CCeEEEeeCCCeEEEEEcCC
Q psy18231 164 LSGLMHTRFPVDGSYCLTCG-SDKKIKLWNPYR----NLLLKTYGGHAHEVNDATAACD-SSQIASGASDKSVILWEVTT 237 (540)
Q Consensus 164 ~~~v~~v~~spdg~~lat~~-~dg~i~iwd~~~----~~~~~~~~~h~~~v~~l~~sp~-~~~l~s~s~dg~i~iwd~~~ 237 (540)
...+..++|++++..|+.+. ..+.|..+++.. ......+.........|++.+. ++++++-...+.|.+.++..
T Consensus 405 ~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg 484 (699)
T 1n7d_A 405 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG 484 (699)
T ss_dssp CTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSSSBCEECCTTTSCEEEEBSSS
T ss_pred CcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeCCcEEEEeccCCeEEEEecCC
Confidence 35677899998777766553 467898988765 2222222211233566888754 44555556678999999865
Q ss_pred CceeEeccccCCceeEEEECCCCCEEEEecC--CCcEEEEEec
Q psy18231 238 GQPVRRWREHASKVTCVKFNEDSSVVISGSQ--DNTVMMWDVK 278 (540)
Q Consensus 238 ~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~--dg~i~iwd~~ 278 (540)
......+.........++++|.+.+|+.+.. .+.|..+++.
T Consensus 485 ~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~d 527 (699)
T 1n7d_A 485 VKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN 527 (699)
T ss_dssp CCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSS
T ss_pred CceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCC
Confidence 5443333333345678888886555554432 2456555543
|
| >1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A | Back alignment and structure |
|---|
Probab=97.47 E-value=0.014 Score=53.19 Aligned_cols=102 Identities=10% Similarity=0.047 Sum_probs=53.4
Q ss_pred cCCeeEeeeCC-----CeEEEEeCCCCceEEe--eeCCc-eEEEEEecCCcEEEeecCC-----CeEEEEeccccch--h
Q psy18231 387 SDHEILTASLD-----CRIRRYDIRTGNLVTD--YVGEP-IVDACFTRDCQCILTCSTD-----ECLRLFDKATGEL--L 451 (540)
Q Consensus 387 ~~~~l~~~~~d-----g~i~iwd~~~~~~~~~--~~~~~-i~~~~~sp~~~~l~~~~~d-----g~i~i~d~~~~~~--~ 451 (540)
...+++.|+.+ ..+.+||+.+.+-... +.... -.+++. -++++++.|+.+ ..+.+||+.+.+- +
T Consensus 168 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~ 246 (308)
T 1zgk_A 168 NRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCV-LHNCIYAAGGYDGQDQLNSVERYDVETETWTFV 246 (308)
T ss_dssp TTEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE-ETTEEEEECCBCSSSBCCCEEEEETTTTEEEEC
T ss_pred CCEEEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEE-ECCEEEEEeCCCCCCccceEEEEeCCCCcEEEC
Confidence 33555555543 4578888876643221 11111 112222 277888888764 5689999876532 2
Q ss_pred hhhccCcCCcceEEEEecCCCCeEEEeeCC-----CcEEEEEecCCc
Q psy18231 452 EEYKGHKSGDFRIECCLDSKDSQIFCGSSD-----GKIYKWQLVDSS 493 (540)
Q Consensus 452 ~~~~~~~~~v~~~~~~~s~~~~~l~s~s~d-----g~i~iwd~~~~~ 493 (540)
..+..... ...++. -++++++.|+.+ ..+.+||+.+.+
T Consensus 247 ~~~p~~r~---~~~~~~-~~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 289 (308)
T 1zgk_A 247 APMKHRRS---ALGITV-HQGRIYVLGGYDGHTFLDSVECYDPDTDT 289 (308)
T ss_dssp CCCSSCCB---SCEEEE-ETTEEEEECCBCSSCBCCEEEEEETTTTE
T ss_pred CCCCCCcc---ceEEEE-ECCEEEEEcCcCCCcccceEEEEcCCCCE
Confidence 22211111 111122 356777777754 357788876654
|
| >3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=97.47 E-value=0.0075 Score=58.22 Aligned_cols=151 Identities=11% Similarity=0.146 Sum_probs=93.1
Q ss_pred cEEEEEecC---CeeEee-eCCCeEEEEeCCCCceEEeeeC-----CceEEEEE-------ecCCcEEEeecCCC-----
Q psy18231 380 SITSVHVSD---HEILTA-SLDCRIRRYDIRTGNLVTDYVG-----EPIVDACF-------TRDCQCILTCSTDE----- 438 (540)
Q Consensus 380 ~v~~l~~~~---~~l~~~-~~dg~i~iwd~~~~~~~~~~~~-----~~i~~~~~-------sp~~~~l~~~~~dg----- 438 (540)
....|+++| ..|+++ ...+.|++.|++++........ .....++| +++|+.|+++...+
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~ 219 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDE 219 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGG
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCccc
Confidence 456788886 344444 4457799999988776654433 24899999 99999666665543
Q ss_pred --eEEEEeccc-cchh-----hhhccCcCCcceEEEEecCCCCe-EEEeeCCCcEEEEEec-------CCcc--------
Q psy18231 439 --CLRLFDKAT-GELL-----EEYKGHKSGDFRIECCLDSKDSQ-IFCGSSDGKIYKWQLV-------DSSQ-------- 494 (540)
Q Consensus 439 --~i~i~d~~~-~~~~-----~~~~~~~~~v~~~~~~~s~~~~~-l~s~s~dg~i~iwd~~-------~~~~-------- 494 (540)
.|.+++... ++.. ..+..... ...+ +.+|++.. +++-..++.|+.+|+. ++..
T Consensus 220 ~~~V~~i~r~~~G~~~~~~~~~~v~~~~~-p~gi--avdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~ 296 (496)
T 3kya_A 220 SPSVYIIKRNADGTFDDRSDIQLIAAYKQ-CNGA--TIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNN 296 (496)
T ss_dssp EEEEEEEECCTTSCCSTTSCEEEEEEESC-CCCE--EECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGC
T ss_pred CceEEEEecCCCCceeecccceeeccCCC-ceEE--EEcCCCCeEEEEECCCCEEEEEecccccccccCceeeccccccc
Confidence 366665333 2221 11211111 2234 68885555 5556677889999987 5553
Q ss_pred ---eeEEEecccceeeeEEEEcCCCcEEEeec--CCeeEEEEcc
Q psy18231 495 ---ISTLIHSVGKAVVNSLCSHPTRKHIMSAC--GNNVKLWTAE 533 (540)
Q Consensus 495 ---~~~~~~~~~~~~v~~l~~s~d~~~l~s~~--d~~i~iw~~~ 533 (540)
...+...........++|+|+|++|..+. .+.|+.++..
T Consensus 297 ~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~d 340 (496)
T 3kya_A 297 PNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYD 340 (496)
T ss_dssp TTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEE
T ss_pred ccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecC
Confidence 22322112334568999999999655554 7788886654
|
| >1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A* | Back alignment and structure |
|---|
Probab=97.47 E-value=0.00013 Score=78.19 Aligned_cols=112 Identities=17% Similarity=0.168 Sum_probs=77.0
Q ss_pred ceecCCceEEeccCCCCCHHHHHHHHHcCCCEEEeeeeeccccc--ccchhh----------------------------
Q psy18231 11 STLLKNLKHCDSTLWTSKLNFRQLVRSHNVDLCFTPMIIADSFI--KSSKAR---------------------------- 60 (540)
Q Consensus 11 ~~~~~~~~~~ap~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~--~~~~~~---------------------------- 60 (540)
++.+++++++|||.+.++.++++.+.+.|.+.+.+..+....-. +..+..
T Consensus 539 G~~~~nPv~lAa~~~~~~~~~~~~~~~~g~G~vv~~t~~~~~~~~gn~~pr~~~~~~~g~~~~~~~~~~~n~e~~~~~~~ 618 (1025)
T 1gte_A 539 GLKFINPFGLASAAPTTSSSMIRRAFEAGWGFALTKTFSLDKDIVTNVSPRIVRGTTSGPMYGPGQSSFLNIELISEKTA 618 (1025)
T ss_dssp TEEESSSEEECSSGGGSSHHHHHHHHHHTCSEEECCCBCCGGGCCCCCSSCEEECCTTCSCCSSCCSCEEECCCSCSSCH
T ss_pred cccccCcccccCCCCCCCHHHHHHHHHCCcCeEEeceecccccccCCCCccEEeccccccccCCchhheeeeccccchhH
Confidence 45678999999999999999999999999999987766643211 100000
Q ss_pred ------ccccccCCCCCCEEEEE-ecCChhHHHHHHHHhc-CCCCeEeeccCCCceEEEeccccceecccc
Q psy18231 61 ------NNEFSTSPEDTPLVVQF-ASNNHDDFVRATQYVA-PHCNGVDLNCGCPQRWAIKEGYGCALLSKQ 123 (540)
Q Consensus 61 ------~~~~~~~~~~~~~~~q~-~~~~~~~~~~~~~~~~-~~~~~id~~~gc~~~~~~~~g~g~~l~~~~ 123 (540)
...+.....+.|+++++ .+.+++++.++++.+. .++|.|++|.+||.. ....+.|++++.++
T Consensus 619 ~~~~~~i~~~~~~~~~~~~i~~i~~g~~~~~~~~~a~~~~~~g~d~iein~~~P~~-~~~~~~G~~~~~~~ 688 (1025)
T 1gte_A 619 AYWCQSVTELKADFPDNIVIASIMCSYNKNDWMELSRKAEASGADALELNLSCPHG-MGERGMGLACGQDP 688 (1025)
T ss_dssp HHHHHHHHHHHHHCTTSEEEEEECCCSCHHHHHHHHHHHHHTTCSEEEEECCCBCC-CC-----SBGGGCH
T ss_pred HHHHHHHHHHHhcCCCCCeEEEecCCCCHHHHHHHHHHHHhcCCCEEEEECCCCCC-CCCCCcccccccCH
Confidence 00011112256777766 6889999999999874 589999999999987 44566788887763
|
| >2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.46 E-value=0.0053 Score=55.87 Aligned_cols=142 Identities=10% Similarity=0.092 Sum_probs=71.4
Q ss_pred cCCeeEeeeCCC-----eEEEEeCCCCceEEe--eeCCc-eEEEEEecCCcEEEeecCC-------CeEEEEeccccc--
Q psy18231 387 SDHEILTASLDC-----RIRRYDIRTGNLVTD--YVGEP-IVDACFTRDCQCILTCSTD-------ECLRLFDKATGE-- 449 (540)
Q Consensus 387 ~~~~l~~~~~dg-----~i~iwd~~~~~~~~~--~~~~~-i~~~~~sp~~~~l~~~~~d-------g~i~i~d~~~~~-- 449 (540)
....++.|+.++ .+.+||+.+.+-... +.... -.+++ .-++++++.|+.+ ..+.+||..+.+
T Consensus 108 ~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~ 186 (302)
T 2xn4_A 108 NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVG-VVGGLLYAVGGYDVASRQCLSTVECYNATTNEWT 186 (302)
T ss_dssp TTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEE-EETTEEEEECCEETTTTEECCCEEEEETTTTEEE
T ss_pred CCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEE-EECCEEEEEeCCCCCCCccccEEEEEeCCCCcEE
Confidence 345555555442 477888876653222 11111 11222 2367777777642 358899987653
Q ss_pred hhhhhccCcCCcceEEEEecCCCCeEEEeeCC-----CcEEEEEecCCcceeEEEecccceeeeEEEEcCCCcEEEeec-
Q psy18231 450 LLEEYKGHKSGDFRIECCLDSKDSQIFCGSSD-----GKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC- 523 (540)
Q Consensus 450 ~~~~~~~~~~~v~~~~~~~s~~~~~l~s~s~d-----g~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~- 523 (540)
.+..+....... .. + ..++++++.|+.+ ..+.+||..+.+-...-..+........+. -++++++.|+
T Consensus 187 ~~~~~p~~r~~~-~~--~-~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~--~~~~i~v~GG~ 260 (302)
T 2xn4_A 187 YIAEMSTRRSGA-GV--G-VLNNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCRRNAGVCA--VNGLLYVVGGD 260 (302)
T ss_dssp EECCCSSCCBSC-EE--E-EETTEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE--ETTEEEEECCB
T ss_pred ECCCCccccccc-cE--E-EECCEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCCccccCeEEE--ECCEEEEECCc
Confidence 222221111111 11 2 2356777888764 368899987654322111101111111222 2677777777
Q ss_pred CC-----eeEEEEcccc
Q psy18231 524 GN-----NVKLWTAEED 535 (540)
Q Consensus 524 d~-----~i~iw~~~~~ 535 (540)
++ .+.+||++++
T Consensus 261 ~~~~~~~~v~~yd~~~~ 277 (302)
T 2xn4_A 261 DGSCNLASVEYYNPTTD 277 (302)
T ss_dssp CSSSBCCCEEEEETTTT
T ss_pred CCCcccccEEEEcCCCC
Confidence 53 4788887643
|
| >3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex} | Back alignment and structure |
|---|
Probab=97.46 E-value=0.00026 Score=72.65 Aligned_cols=98 Identities=8% Similarity=-0.113 Sum_probs=68.7
Q ss_pred cceecCCceEEeccCCCCCHH-------HHHHHHHcCCCEEEeeeeecccccccchhhc-cccc-------------cCC
Q psy18231 10 RSTLLKNLKHCDSTLWTSKLN-------FRQLVRSHNVDLCFTPMIIADSFIKSSKARN-NEFS-------------TSP 68 (540)
Q Consensus 10 ~~~~~~~~~~~ap~~~~~~~~-------~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-------------~~~ 68 (540)
+++.+++|+++|||.+.+..+ ||...++.|+++.+||++.....-+..+... .... .++
T Consensus 21 g~~~l~NRiv~apm~~~~~~~~~~~~~~~~~~~a~gG~gliite~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vh~ 100 (690)
T 3k30_A 21 GPFTTKNRFYQVPHCNGMGYRDPSAQASMRKIKAEGGWSAVCTEQVEIHATSDIAPFIELRIWDDQDLPALKRIADAIHE 100 (690)
T ss_dssp TTEECSSSEEECCCCCSCSSSCHHHHHHHHHHHHHTTCSEEEEEEEECSGGGCCTTSCCEECSSGGGHHHHHHHHHHHHH
T ss_pred CCEEECCCeEeCCCcCCCCCCChHHHHHHHHHHhccCCEEEEecceEeccccccCCCcCCccCCHHHHHHHHHHHHHHHh
Confidence 468899999999999776543 6767777899999999987654433222211 1110 135
Q ss_pred CCCCEEEEEecCC-----------------------------------------hhHHHHHHHHhcC-CCCeEeeccCCC
Q psy18231 69 EDTPLVVQFASNN-----------------------------------------HDDFVRATQYVAP-HCNGVDLNCGCP 106 (540)
Q Consensus 69 ~~~~~~~q~~~~~-----------------------------------------~~~~~~~~~~~~~-~~~~id~~~gc~ 106 (540)
.+.++++|++... .+++++||+...+ +.|+|+++++|.
T Consensus 101 ~g~~i~~Ql~h~Gr~~~~~~~~~~~~~ps~~~~~~~~~~~~~p~~~t~~ei~~~i~~f~~aA~~a~~aGfDgVeih~a~g 180 (690)
T 3k30_A 101 GGGLAGIELAHNGMNAPNQLSRETPLGPGHLPVAPDTIAPIQARAMTKQDIDDLRRWHRNAVRRSIEAGYDIVYVYGAHG 180 (690)
T ss_dssp TTCEEEEEEECCGGGCCCTTTCCCCEESSSCBSCSSCCCSCBCEECCHHHHHHHHHHHHHHHHHHHHHTCSEEEEEECTT
T ss_pred cCCEEEEEccCCcccccccccCCCccCCCCCcccccccCCCCCCcCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEccccc
Confidence 6778999999310 1677888886555 999999999877
Q ss_pred c
Q psy18231 107 Q 107 (540)
Q Consensus 107 ~ 107 (540)
.
T Consensus 181 y 181 (690)
T 3k30_A 181 Y 181 (690)
T ss_dssp C
T ss_pred c
Confidence 6
|
| >3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.41 E-value=0.0098 Score=54.19 Aligned_cols=143 Identities=11% Similarity=0.048 Sum_probs=72.2
Q ss_pred cCCeeEeeeCC------CeEEEEeCCCCceEEe--eeCCceEEEEEecCCcEEEeecC---------CCeEEEEeccccc
Q psy18231 387 SDHEILTASLD------CRIRRYDIRTGNLVTD--YVGEPIVDACFTRDCQCILTCST---------DECLRLFDKATGE 449 (540)
Q Consensus 387 ~~~~l~~~~~d------g~i~iwd~~~~~~~~~--~~~~~i~~~~~sp~~~~l~~~~~---------dg~i~i~d~~~~~ 449 (540)
...+++.|+.+ ..+.+||..+.+-... +........+..-++++++.|+. -..+.+||..+.+
T Consensus 101 ~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~ 180 (306)
T 3ii7_A 101 EGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVEANGLIYVCGGSLGNNVSGRVLNSCEVYDPATET 180 (306)
T ss_dssp TTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCEESCTTTCEECCCEEEEETTTTE
T ss_pred CCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEEECCEEEEECCCCCCCCcccccceEEEeCCCCCe
Confidence 34555566544 4588889887653222 11111111112236777777764 3458899987653
Q ss_pred --hhhhhccCcCCcceEEEEecCCCCeEEEeeCC-----CcEEEEEecCCcceeEEEecccceeeeEEEEcCCCcEEEee
Q psy18231 450 --LLEEYKGHKSGDFRIECCLDSKDSQIFCGSSD-----GKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSA 522 (540)
Q Consensus 450 --~~~~~~~~~~~v~~~~~~~s~~~~~l~s~s~d-----g~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~ 522 (540)
.+..+.. +.....++. -++++++.|+.+ ..+.+||+.+.+-...-..+........+.+ ++++++.|
T Consensus 181 W~~~~~~p~---~r~~~~~~~-~~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~G 254 (306)
T 3ii7_A 181 WTELCPMIE---ARKNHGLVF-VKDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWKGVTVKCAAV--GSIVYVLA 254 (306)
T ss_dssp EEEECCCSS---CCBSCEEEE-ETTEEEEECCEETTEEBCCEEEEETTTTEEEECCCCSCCBSCCEEEEE--TTEEEEEE
T ss_pred EEECCCccc---hhhcceEEE-ECCEEEEEeCCCCCCCCceEEEeeCCCCcEEECCCCCCCccceeEEEE--CCEEEEEe
Confidence 2222211 111111122 266777777654 3588899876532211111011122223333 67777777
Q ss_pred c-C-----CeeEEEEcccc
Q psy18231 523 C-G-----NNVKLWTAEED 535 (540)
Q Consensus 523 ~-d-----~~i~iw~~~~~ 535 (540)
+ + ..+.+||++++
T Consensus 255 G~~~~~~~~~~~~yd~~~~ 273 (306)
T 3ii7_A 255 GFQGVGRLGHILEYNTETD 273 (306)
T ss_dssp CBCSSSBCCEEEEEETTTT
T ss_pred CcCCCeeeeeEEEEcCCCC
Confidence 7 5 35778887653
|
| >2z6i_A Trans-2-enoyl-ACP reductase II; fatty acid synthesis, antibiotics, oxidoreductase, flavoprotein; HET: FMN; 1.70A {Streptococcus pneumoniae} PDB: 2z6j_A* | Back alignment and structure |
|---|
Probab=97.38 E-value=0.00018 Score=66.36 Aligned_cols=91 Identities=9% Similarity=-0.007 Sum_probs=66.3
Q ss_pred ceecCCceEEeccCCCCCHHHHHHHHHcCC-CEEEeeeeecccccccchhhccccccCCCCCCEEEEEecCChhHHHHHH
Q psy18231 11 STLLKNLKHCDSTLWTSKLNFRQLVRSHNV-DLCFTPMIIADSFIKSSKARNNEFSTSPEDTPLVVQFASNNHDDFVRAT 89 (540)
Q Consensus 11 ~~~~~~~~~~ap~~~~~~~~~r~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~ 89 (540)
-+.++.++++|||.|+++..++..+.+.|+ ++..+++++..++.+.-+..... .+.|+.+|++..+++. .+.+
T Consensus 8 ~l~~~~Pii~apM~g~s~~~la~av~~aG~lG~i~~~~~~~~~~~~~i~~i~~~-----~~~p~gvnl~~~~~~~-~~~~ 81 (332)
T 2z6i_A 8 LLKIDYPIFQGGMAWVADGDLAGAVSKAGGLGIIGGGNAPKEVVKANIDKIKSL-----TDKPFGVNIMLLSPFV-EDIV 81 (332)
T ss_dssp HHTCSSSEEECCCTTTCCHHHHHHHHHHTSBEEEECTTCCHHHHHHHHHHHHHH-----CCSCEEEEECTTSTTH-HHHH
T ss_pred HhCCCCCEEeCCCCCCCcHHHHHHHHhCCCcEEeCCCCCCHHHHHHHHHHHHHh-----cCCCEEEEecCCCCCH-HHHH
Confidence 344788999999999999999999999986 88888887766553322222111 2478999999876652 3333
Q ss_pred H-HhcCCCCeEeeccCCCc
Q psy18231 90 Q-YVAPHCNGVDLNCGCPQ 107 (540)
Q Consensus 90 ~-~~~~~~~~id~~~gc~~ 107 (540)
+ ....+.+.|.++.|+|.
T Consensus 82 ~~a~~~g~d~V~~~~g~p~ 100 (332)
T 2z6i_A 82 DLVIEEGVKVVTTGAGNPS 100 (332)
T ss_dssp HHHHHTTCSEEEECSSCGG
T ss_pred HHHHHCCCCEEEECCCChH
Confidence 3 34568899999999874
|
| >3oix_A Putative dihydroorotate dehydrogenase; dihydrooro oxidase; TIM barrel, oxidoreductase; HET: MLY FMN; 2.40A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=97.36 E-value=0.00042 Score=63.44 Aligned_cols=105 Identities=11% Similarity=0.071 Sum_probs=75.6
Q ss_pred ceecCCceEEeccCCC--CCHHHHHHHHHcCCCEEEeeeeecccccccchhhccc----------------------c-c
Q psy18231 11 STLLKNLKHCDSTLWT--SKLNFRQLVRSHNVDLCFTPMIIADSFIKSSKARNNE----------------------F-S 65 (540)
Q Consensus 11 ~~~~~~~~~~ap~~~~--~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------~-~ 65 (540)
++.+++++.+| +|. .+..+.+.+...|++.+.+..++......+.+-+..+ + +
T Consensus 44 Gl~~~NPv~lA--aG~~~~~~e~~~~~~~~G~G~v~~ktvt~~pq~gnp~PR~~~~~~~~iN~~G~~n~G~~~~~~~l~~ 121 (345)
T 3oix_A 44 SFDFDNCLMNA--AGVYCMTREELAAIDHSEAGSFVTXTGTLEERAGNPQPRYADTKLGSINSMGLPNLGINYYLDYVTE 121 (345)
T ss_dssp TEEESCSEEEC--TTSSCSSHHHHHHHHTSSCSBCBCCCBCSSCBCCSCSCCEEECSSEEEECCCCCBSCHHHHHHHHHH
T ss_pred CEECCCCCEEc--CCCCCCCHHHHHHHHHcCCCeEEeeeecCCCCCCCCCCcEEecccchhccCCCCChhHHHHHHHHHH
Confidence 56789999999 666 4778888899999999998888876432211111111 1 1
Q ss_pred --cCCCCCCEEEEEecCChhHHHHHHHHhcC-CC-CeEeeccCCCceEEEeccccceeccc
Q psy18231 66 --TSPEDTPLVVQFASNNHDDFVRATQYVAP-HC-NGVDLNCGCPQRWAIKEGYGCALLSK 122 (540)
Q Consensus 66 --~~~~~~~~~~q~~~~~~~~~~~~~~~~~~-~~-~~id~~~gc~~~~~~~~g~g~~l~~~ 122 (540)
....+.|+++|+.|.++++++++++.+++ ++ +.|++|++||... | +..|+.+
T Consensus 122 ~~~~~~~~pvivsI~g~~~~d~~~~a~~l~~~g~~d~ielNisCPn~~----G-~~~l~~~ 177 (345)
T 3oix_A 122 LQKQPDSKNHFLSLVGMSPEETHTILXMVEASKYQGLVELNLSCPNVP----G-XPQIAYD 177 (345)
T ss_dssp HHHSTTCCCCEEEECCSSHHHHHHHHHHHHHSSCCSEEEEECSCCCST----T-CCCGGGC
T ss_pred HhhccCCCCEEEEecCCCHHHHHHHHHHHhccCCCcEEEEecCCCCcC----C-chhhcCC
Confidence 02457899999999999999999998863 44 4999999999864 3 4556555
|
| >1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A* | Back alignment and structure |
|---|
Probab=97.35 E-value=0.00023 Score=73.39 Aligned_cols=112 Identities=10% Similarity=-0.052 Sum_probs=73.1
Q ss_pred cceecCCceEEeccCCCC--CHHH------HHHHHHcCCCEEEeeeeecccccccch---------h---hcccc--ccC
Q psy18231 10 RSTLLKNLKHCDSTLWTS--KLNF------RQLVRSHNVDLCFTPMIIADSFIKSSK---------A---RNNEF--STS 67 (540)
Q Consensus 10 ~~~~~~~~~~~ap~~~~~--~~~~------r~~~~~~~~~~~~~~~~~~~~~~~~~~---------~---~~~~~--~~~ 67 (540)
+++.|++|+++|||.+.. +.|. ++.+ +.|+++.+||++.....-...+ . ..+.+ ..+
T Consensus 16 g~~~l~NRiv~apm~~~~~~~~~~~~~~~y~~ra-~gG~Gliite~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vh 94 (729)
T 1o94_A 16 GPKTLRNRFYQVPHCIGAGSDKPGFQSAHRSVKA-EGGWAALNTEYCSINPESDDTHRLSARIWDEGDVRNLKAMTDEVH 94 (729)
T ss_dssp TTEEESSSEEECCCCCSCTTTCHHHHHHHHHHHH-HTTCSEEEEEEEESSTTSCCTTSCCEECSSHHHHHHHHHHHHHHH
T ss_pred CCEEECCccEECCCcCCcCCCCcHHHHHHHHHHh-cCCCCEEEEcceEecCcccCCCCCCCccCChHHhHHHHHHHHHHH
Confidence 468899999999998853 4563 3333 4589999999987653221111 1 11111 125
Q ss_pred CCCCCEEEEEecCC---------------------------------------hhHHHHHHHHhc-CCCCeEeeccCC--
Q psy18231 68 PEDTPLVVQFASNN---------------------------------------HDDFVRATQYVA-PHCNGVDLNCGC-- 105 (540)
Q Consensus 68 ~~~~~~~~q~~~~~---------------------------------------~~~~~~~~~~~~-~~~~~id~~~gc-- 105 (540)
..+.++++|++... .+++++||+... .+.|.|++|++|
T Consensus 95 ~~g~~i~~Ql~h~Gr~~~~~~~~~~~~~ps~~~~~~~~~~~p~~~t~~eI~~~i~~f~~aA~~a~~aGfDgVEih~a~gy 174 (729)
T 1o94_A 95 KYGALAGVELWYGGAHAPNMESRATPRGPSQYASEFETLSYCKEMDLSDIAQVQQFYVDAAKRSRDAGFDIVYVYGAHSY 174 (729)
T ss_dssp TTTCEEEEEEECCGGGSCCTTTCCCCEESSCCBCSSSTTCBCEECCHHHHHHHHHHHHHHHHHHHHTTCSEEEEEECTTC
T ss_pred hCCCeEEEEecCCCccccccccCCCCcCCCcccccccCCCCCCcCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEccccch
Confidence 67889999998831 257888887644 599999999999
Q ss_pred -------CceEEEeccccceeccc
Q psy18231 106 -------PQRWAIKEGYGCALLSK 122 (540)
Q Consensus 106 -------~~~~~~~~g~g~~l~~~ 122 (540)
|..-...+.+|..+..+
T Consensus 175 Ll~qFlsp~~N~R~D~yGGs~enR 198 (729)
T 1o94_A 175 LPLQFLNPYYNKRTDKYGGSLENR 198 (729)
T ss_dssp HHHHHHCTTTCCCCSTTSSSHHHH
T ss_pred HHHHhcCCccCCCcCcCCCCHHHH
Confidence 54444444555555443
|
| >1tv5_A Dhodehase, dihydroorotate dehydrogenase homolog, mitochondri, dihydroorotate; alpha-beta barrel, TIM barrel, oxidoreductase; HET: A26 FMN ORO N8E; 2.40A {Plasmodium falciparum} SCOP: c.1.4.1 | Back alignment and structure |
|---|
Probab=97.33 E-value=0.00061 Score=64.47 Aligned_cols=98 Identities=10% Similarity=0.056 Sum_probs=72.1
Q ss_pred cceecCCceEEeccCCCCCHHHHHHHHHcCCCEEEeeeeecccccccchhhcc------------------------ccc
Q psy18231 10 RSTLLKNLKHCDSTLWTSKLNFRQLVRSHNVDLCFTPMIIADSFIKSSKARNN------------------------EFS 65 (540)
Q Consensus 10 ~~~~~~~~~~~ap~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------~~~ 65 (540)
.++.+++++.+|++..=....+|.+ .+.|++.+.+++++.+...-+.+-+.. .+.
T Consensus 87 ~Gl~~~NPvglAAG~dk~~~~~~~l-~~~GfG~v~~gtvT~~pq~GNp~PR~~rl~e~~~iiN~~GfnN~G~~~~~~~l~ 165 (443)
T 1tv5_A 87 KHLDFINPFGVAAGFDKNGVCIDSI-LKLGFSFIEIGTITPRGQTGNAKPRIFRDVESRSIINSCGFNNMGCDKVTENLI 165 (443)
T ss_dssp TTEEESSSEEECTTTTTTCSSHHHH-HTTTCSEEEEEEECSSCBCCSCSCCEEEETTTTEEEECCCSCBSCHHHHHHHHH
T ss_pred CCEEeCCCcEECCcccCccHHHHHH-HhcCCCEEEEeeeecCCCCCCCCccEEeccccceeeeccccCChhHHHHHHHHH
Confidence 4678899999998776555688885 778999999999997643221110100 000
Q ss_pred c-CC--------CCCCEEEEEecCC-----hhHHHHHHHHhcCCCCeEeeccCCCce
Q psy18231 66 T-SP--------EDTPLVVQFASNN-----HDDFVRATQYVAPHCNGVDLNCGCPQR 108 (540)
Q Consensus 66 ~-~~--------~~~~~~~q~~~~~-----~~~~~~~~~~~~~~~~~id~~~gc~~~ 108 (540)
. .. ...|+++|+.++. +++++++++.+.+++|.|++|.+||..
T Consensus 166 ~~~~~~~~~~~~~~~~vgvni~~~~~~~~~~~dy~~~a~~l~~~aD~ieiNiscPnt 222 (443)
T 1tv5_A 166 LFRKRQEEDKLLSKHIVGVSIGKNKDTVNIVDDLKYCINKIGRYADYIAINVSSPNT 222 (443)
T ss_dssp HHHHHHHHCSTTTTCEEEEEECCCTTCSCHHHHHHHHHHHHGGGCSEEEEECCCTTS
T ss_pred HHhhhcccccccCCceEEEEecCcccchHHHHHHHHHHHHHhcCCCEEEEeccCCCC
Confidence 0 00 1457999999998 889999999988899999999999975
|
| >4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.27 E-value=0.016 Score=52.99 Aligned_cols=61 Identities=5% Similarity=0.071 Sum_probs=34.7
Q ss_pred EEEEeeCCCcEEEEcCCCCeeEE-EeecCCcceeEEEEeeCCCeEEEeeC-----C------CeEEEEEcCCCce
Q psy18231 178 YCLTCGSDKKIKLWNPYRNLLLK-TYGGHAHEVNDATAACDSSQIASGAS-----D------KSVILWEVTTGQP 240 (540)
Q Consensus 178 ~lat~~~dg~i~iwd~~~~~~~~-~~~~h~~~v~~l~~sp~~~~l~s~s~-----d------g~i~iwd~~~~~~ 240 (540)
+++.|+ ..+.+||+.+++-.. .+..............++..++.|+. . ..+.+||..+++-
T Consensus 7 l~~~GG--~~~~~yd~~~~~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W 79 (315)
T 4asc_A 7 IFMISE--EGAVAYDPAANECYCASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEW 79 (315)
T ss_dssp EEEEET--TEEEEEETTTTEEEEEECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEE
T ss_pred EEEEcC--CceEEECCCCCeEecCCCCCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeE
Confidence 344555 578899998876432 22211122233333447778888873 1 1277888877654
|
| >3vkj_A Isopentenyl-diphosphate delta-isomerase; type 2 isopentenyl diphosphate isomerase; HET: FNR; 1.70A {Sulfolobus shibatae} PDB: 2zrv_A* 2zrw_A* 2zrx_A* 2zry_A* 2zrz_A* 3b03_A* 3b04_A* 3b05_A* 3b06_A* 2zru_A* | Back alignment and structure |
|---|
Probab=97.24 E-value=0.00032 Score=64.88 Aligned_cols=90 Identities=13% Similarity=0.109 Sum_probs=64.1
Q ss_pred ceecCCceEEeccCCCCCHHH------HHHHHHcCCCEEEeeeeec--ccccccchhhccccccCCCCCCEEE-----EE
Q psy18231 11 STLLKNLKHCDSTLWTSKLNF------RQLVRSHNVDLCFTPMIIA--DSFIKSSKARNNEFSTSPEDTPLVV-----QF 77 (540)
Q Consensus 11 ~~~~~~~~~~ap~~~~~~~~~------r~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~-----q~ 77 (540)
+..++.|+++|||+|.|+.|+ |++|+++|+.+.+++|..+ +..+.......+. ..| +.|++. |+
T Consensus 55 g~~l~~Pv~ia~MtGgt~~~~~in~~la~~a~~~G~~~~vGs~~~~l~~~~~~~s~~~vr~--~ap-~~~~~anlg~~ql 131 (368)
T 3vkj_A 55 RKEISVPVMVTGMTGGRNELGRINKIIAEVAEKFGIPMGVGSQRVAIEKAEARESFAIVRK--VAP-TIPIIANLGMPQL 131 (368)
T ss_dssp TEEESSSEEECCCCCSSHHHHHHHHHHHHHHHHHTCCEECCCCHHHHHCGGGSHHHHHHHH--HCS-SSCEEEEEEGGGG
T ss_pred CEeccCCeEEecCCCCCchhhHHHHHHHHHHHHhCCCeeeecchhccCCHHHHhhHHHHHH--hCc-CcceecCcCeeec
Confidence 566788999999999999995 9999999999999999544 2222222211121 123 345543 55
Q ss_pred ec-CChhHHHHHHHHhcCCCCeEeecc
Q psy18231 78 AS-NNHDDFVRATQYVAPHCNGVDLNC 103 (540)
Q Consensus 78 ~~-~~~~~~~~~~~~~~~~~~~id~~~ 103 (540)
.+ .+++.+.++++++..+...|++|.
T Consensus 132 ~~~~~~~~~~~av~~~~a~al~Ihln~ 158 (368)
T 3vkj_A 132 VKGYGLKEFQDAIQMIEADAIAVHLNP 158 (368)
T ss_dssp GTTCCHHHHHHHHHHTTCSEEEEECCH
T ss_pred CCCCCHHHHHHHHHHhcCCCeEEEecc
Confidence 55 778999999998866777788774
|
| >1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A | Back alignment and structure |
|---|
Probab=97.24 E-value=0.019 Score=52.38 Aligned_cols=142 Identities=9% Similarity=0.122 Sum_probs=71.0
Q ss_pred cCCeeEeeeCC-----CeEEEEeCCCCceEEe--eeCCc-eEEEEEecCCcEEEeecCC-----CeEEEEeccccch--h
Q psy18231 387 SDHEILTASLD-----CRIRRYDIRTGNLVTD--YVGEP-IVDACFTRDCQCILTCSTD-----ECLRLFDKATGEL--L 451 (540)
Q Consensus 387 ~~~~l~~~~~d-----g~i~iwd~~~~~~~~~--~~~~~-i~~~~~sp~~~~l~~~~~d-----g~i~i~d~~~~~~--~ 451 (540)
...+++.|+.+ ..+.+||+.+.+-... +.... -.+++. -++++++.|+.+ ..+.+||..+.+- +
T Consensus 121 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~ 199 (308)
T 1zgk_A 121 DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAV-LNRLLYAVGGFDGTNRLNSAECYYPERNEWRMI 199 (308)
T ss_dssp TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEE-ETTEEEEECCBCSSCBCCCEEEEETTTTEEEEC
T ss_pred CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEE-ECCEEEEEeCCCCCCcCceEEEEeCCCCeEeeC
Confidence 33445555432 3578888877653221 11111 112222 267777877754 4588999876532 2
Q ss_pred hhhccCcCCcceEEEEecCCCCeEEEeeCC-----CcEEEEEecCCcceeEEEecccceeeeEEEEcCCCcEEEeec-CC
Q psy18231 452 EEYKGHKSGDFRIECCLDSKDSQIFCGSSD-----GKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC-GN 525 (540)
Q Consensus 452 ~~~~~~~~~v~~~~~~~s~~~~~l~s~s~d-----g~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~-d~ 525 (540)
..+....... .. +. -++++++.|+.+ ..+.+||+.+.+-...-..+........+.+ ++++++.|+ ++
T Consensus 200 ~~~p~~r~~~-~~--~~-~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~ 273 (308)
T 1zgk_A 200 TAMNTIRSGA-GV--CV-LHNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRRSALGITVH--QGRIYVLGGYDG 273 (308)
T ss_dssp CCCSSCCBSC-EE--EE-ETTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCS
T ss_pred CCCCCccccc-eE--EE-ECCEEEEEeCCCCCCccceEEEEeCCCCcEEECCCCCCCccceEEEEE--CCEEEEEcCcCC
Confidence 2221111111 11 22 266777777764 5689999876543221111011111122222 577777776 43
Q ss_pred -----eeEEEEcccc
Q psy18231 526 -----NVKLWTAEED 535 (540)
Q Consensus 526 -----~i~iw~~~~~ 535 (540)
.+.+||++++
T Consensus 274 ~~~~~~v~~yd~~~~ 288 (308)
T 1zgk_A 274 HTFLDSVECYDPDTD 288 (308)
T ss_dssp SCBCCEEEEEETTTT
T ss_pred CcccceEEEEcCCCC
Confidence 5778887643
|
| >3bo9_A Putative nitroalkan dioxygenase; TM0800, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE 2PE; 2.71A {Thermotoga maritima MSB8} | Back alignment and structure |
|---|
Probab=97.15 E-value=0.00061 Score=62.45 Aligned_cols=93 Identities=11% Similarity=0.064 Sum_probs=64.3
Q ss_pred cceecCCceEEeccCCCCCHHHHHHHHHcCC-CEEEeeeeecccccccchhhccccccCCCCCCEEEEEecCChhHHHHH
Q psy18231 10 RSTLLKNLKHCDSTLWTSKLNFRQLVRSHNV-DLCFTPMIIADSFIKSSKARNNEFSTSPEDTPLVVQFASNNHDDFVRA 88 (540)
Q Consensus 10 ~~~~~~~~~~~ap~~~~~~~~~r~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~ 88 (540)
+...++.+++.|||.|+++..++..+.+.|+ ++....+++..++.+.-+.... ..+.|+.++++..+++.-...
T Consensus 21 ~~l~~~~Pii~apM~gvs~~~la~av~~aGglG~i~~~~~~~~~l~~~i~~i~~-----~~~~p~gVnl~~~~~~~~~~~ 95 (326)
T 3bo9_A 21 DLLEIEHPILMGGMAWAGTPTLAAAVSEAGGLGIIGSGAMKPDDLRKAISELRQ-----KTDKPFGVNIILVSPWADDLV 95 (326)
T ss_dssp HHHTCSSSEEECCCTTTSCHHHHHHHHHTTSBEEEECTTCCHHHHHHHHHHHHT-----TCSSCEEEEEETTSTTHHHHH
T ss_pred HhcCCCCCEEECCCCCCCCHHHHHHHHhCCCcEEeCCCCCCHHHHHHHHHHHHH-----hcCCCEEEEEeccCCCHHHHH
Confidence 4556788999999999999999999999986 7777777665544332221111 124789999998666432222
Q ss_pred HHHhcCCCCeEeeccCCCc
Q psy18231 89 TQYVAPHCNGVDLNCGCPQ 107 (540)
Q Consensus 89 ~~~~~~~~~~id~~~gc~~ 107 (540)
...+..+.+.|.++.|+|.
T Consensus 96 ~~~~~~g~d~V~l~~g~p~ 114 (326)
T 3bo9_A 96 KVCIEEKVPVVTFGAGNPT 114 (326)
T ss_dssp HHHHHTTCSEEEEESSCCH
T ss_pred HHHHHCCCCEEEECCCCcH
Confidence 2234557899999998874
|
| >4ef8_A Dihydroorotate dehydrogenase; phenyl isothiocyanate, PYRD, oxidoreductase, oxidoreductase-oxidor inhibitor complex; HET: FMN; 1.56A {Leishmania major} PDB: 3gye_A* 3gz3_A* 4ef9_A* 3tro_A* 3tjx_A* | Back alignment and structure |
|---|
Probab=97.15 E-value=0.0017 Score=59.55 Aligned_cols=116 Identities=10% Similarity=0.034 Sum_probs=74.0
Q ss_pred ccccceeec---ceecCCceEEeccCCCCCHHHHHHHHHcCCCEEEeeeeecccccccchhh------------------
Q psy18231 2 CRNNCRFNR---STLLKNLKHCDSTLWTSKLNFRQLVRSHNVDLCFTPMIIADSFIKSSKAR------------------ 60 (540)
Q Consensus 2 ~~~~~~~~~---~~~~~~~~~~ap~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------ 60 (540)
|+.+-++.. ++.+++++.+|-=..-.+.-+-+.+...|++.+.+.-++......+.+-+
T Consensus 31 ~~~~~~L~~~~~Gl~~~NPv~lAAG~~~~~~e~~~~l~~~G~G~v~~ktvt~~pq~GNp~PR~~~~~~~~iN~~G~~n~G 110 (354)
T 4ef8_A 31 GRGSMSLQVNLLNNTFANPFMNAAGVMCTTTEELVAMTESASGSLVSKSCTPALREGNPTPRYQALPLGSINSMGLPNNG 110 (354)
T ss_dssp ---CCCCCEEETTEEESSSEEECTTSSCSSHHHHHHHHHSSCSCEEEEEECSSCBCCSCSCCEEEETTEEEECCCCCBCC
T ss_pred CCCCCCcceEECCEECCCCCEeccCCCCCCHHHHHHHHHcCCCeEEeCcccCcccCCCCCCcEEecchhhhccCCCCCcC
Confidence 444444443 56789999998544435666666666778777777666654322111110
Q ss_pred ----cccccc--CCCCCCEEEEEecCChhHHHHHHHHhc---C-CCCeEeeccCCCceEEEeccccceeccc
Q psy18231 61 ----NNEFST--SPEDTPLVVQFASNNHDDFVRATQYVA---P-HCNGVDLNCGCPQRWAIKEGYGCALLSK 122 (540)
Q Consensus 61 ----~~~~~~--~~~~~~~~~q~~~~~~~~~~~~~~~~~---~-~~~~id~~~gc~~~~~~~~g~g~~l~~~ 122 (540)
...+.. ...+.|+++|++|.++++++++++.+. + ++|.|++|++||... | +..|+.+
T Consensus 111 ~~~~~~~l~~~~~~~~~pvivsI~G~~~~d~~~~a~~l~~~~~~g~d~ielNisCPn~~----g-g~~l~~~ 177 (354)
T 4ef8_A 111 FDFYLAYAAEQHDYGKKPLFLSMSGLSMRENVEMCKRLAAVATEKGVILELNLSCPNVP----G-KPQVAYD 177 (354)
T ss_dssp HHHHHHHHHHTCCTTTCCEEEEECCSSHHHHHHHHHHHHHHHHHHCCEEEEECSSCCST----T-SCCGGGS
T ss_pred HHHHHHHHHHHhhcCCCcEEEEeccCCHHHHHHHHHHHhhhhhcCCCEEEEeCCCCCCC----C-chhhccC
Confidence 011111 123579999999999999999999877 2 689999999999862 3 4566654
|
| >3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A* | Back alignment and structure |
|---|
Probab=97.11 E-value=0.1 Score=48.07 Aligned_cols=119 Identities=8% Similarity=0.060 Sum_probs=73.1
Q ss_pred CCeEEEEeCCCCc----eEEeeeC---CceEEEEEecCCcEEEeec-----------------CCCeEEEEeccccchhh
Q psy18231 397 DCRIRRYDIRTGN----LVTDYVG---EPIVDACFTRDCQCILTCS-----------------TDECLRLFDKATGELLE 452 (540)
Q Consensus 397 dg~i~iwd~~~~~----~~~~~~~---~~i~~~~~sp~~~~l~~~~-----------------~dg~i~i~d~~~~~~~~ 452 (540)
+.+|.+|+++... .+..+.+ ...+.+.+.++|.+.++.. ..|.|.-+|. ++ +.
T Consensus 138 ~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~--~~-~~ 214 (355)
T 3sre_A 138 SSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP--ND-VR 214 (355)
T ss_dssp CCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECT--TC-CE
T ss_pred CCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEEC--Ce-EE
Confidence 5677777765432 2333443 4688999999999877754 1245555654 22 11
Q ss_pred hhccCcCCcceEEEEecCCCCeEEEee-CCCcEEEEEecC-Ccc--eeEEEecccceeeeEEEEcC-CCcEEEeec
Q psy18231 453 EYKGHKSGDFRIECCLDSKDSQIFCGS-SDGKIYKWQLVD-SSQ--ISTLIHSVGKAVVNSLCSHP-TRKHIMSAC 523 (540)
Q Consensus 453 ~~~~~~~~v~~~~~~~s~~~~~l~s~s-~dg~i~iwd~~~-~~~--~~~~~~~~~~~~v~~l~~s~-d~~~l~s~~ 523 (540)
.+...-..-+.+ +|+||++.|+.+. ..+.|+.|++.. ++. ...+. ..+..-.+++.+ +|.+.+++.
T Consensus 215 ~~~~~l~~pNGi--a~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~~---~~g~PDGi~vD~e~G~lwva~~ 285 (355)
T 3sre_A 215 VVAEGFDFANGI--NISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLS---FDTLVDNISVDPVTGDLWVGCH 285 (355)
T ss_dssp EEEEEESSEEEE--EECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEE---CSSEEEEEEECTTTCCEEEEEE
T ss_pred EeecCCcccCcc--eECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEEe---CCCCCceEEEeCCCCcEEEEec
Confidence 221111222344 8999998877664 578899999864 332 12232 246678899999 599888665
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=97.00 E-value=0.06 Score=58.09 Aligned_cols=231 Identities=12% Similarity=0.155 Sum_probs=136.6
Q ss_pred EEeCCCCCEEEEeeCCCcEEEEcCCCCeeEEEeecCCcceeEEEEeeCCCeEEEeeCCCeEEEEEcCCC-ceeEecccc-
Q psy18231 170 TRFPVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTG-QPVRRWREH- 247 (540)
Q Consensus 170 v~~spdg~~lat~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~-~~~~~~~~h- 247 (540)
.-.+|..+.||.=. ..++.|+|+++...++++.- ...|.-=.|-.+ +.|+-.+ +..|.-|++... .+...+..|
T Consensus 71 AIMnP~~~iiALra-g~~lQiFnl~~k~klks~~~-~e~VvfWkWis~-~~l~lVT-~~aVyHW~~~~~s~P~k~fdR~~ 146 (1630)
T 1xi4_A 71 AIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTM-TDDVTFWKWISL-NTVALVT-DNAVYHWSMEGESQPVKMFDRHS 146 (1630)
T ss_pred hccCCCcceEEEec-CCeEEEeehHHhhhhccccc-CCCceEEEecCC-CeeEEEc-CCeEEEeccCCCCccHHHHhcch
Confidence 33578888777654 68999999999888887764 345555556533 3444443 357999999643 444445444
Q ss_pred ---CCceeEEEECCCCCEEEEec-------CCCcEEEEEecCCCCCCcchhhhhHhhhhcCCceeEEEEeeccccccccc
Q psy18231 248 ---ASKVTCVKFNEDSSVVISGS-------QDNTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHLSN 317 (540)
Q Consensus 248 ---~~~v~~~~~~~~~~~l~s~~-------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (540)
...|..-..+++.++++..| -.|.+.+|..+......
T Consensus 147 ~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~sQ~--------------------------------- 193 (1630)
T 1xi4_A 147 SLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQP--------------------------------- 193 (1630)
T ss_pred hcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccccchh---------------------------------
Confidence 45677777788888776433 24677777776654322
Q ss_pred CceeeEEEeeeecccccceeeeeeccceeEEEeecccceecccccccccccchhhhhhcccccEEEEEecC----CeeEe
Q psy18231 318 GLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEARDSITSVHVSD----HEILT 393 (540)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~----~~l~~ 393 (540)
+.+|...-..+.... ..+++
T Consensus 194 --------------------------------------------------------iegha~~F~~~~~~~~~~~~~l~~ 217 (1630)
T 1xi4_A 194 --------------------------------------------------------IEGHAASFAQFKMEGNAEESTLFC 217 (1630)
T ss_pred --------------------------------------------------------hhHhHhhhheeccCCCCCCceEEE
Confidence 222222222221111 11111
Q ss_pred -ee---CCCeEEEEeCCCC---ceEE-----ee------eCCceEEEEEecCCcEEEeecCCCeEEEEeccccchhhhhc
Q psy18231 394 -AS---LDCRIRRYDIRTG---NLVT-----DY------VGEPIVDACFTRDCQCILTCSTDECLRLFDKATGELLEEYK 455 (540)
Q Consensus 394 -~~---~dg~i~iwd~~~~---~~~~-----~~------~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~ 455 (540)
+. ..+++.|-++... .... .+ ...-..++..|+....+..-+.-|.+++||+.++.++..-+
T Consensus 218 f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk~G~~~~~d~~t~~~i~~~r 297 (1630)
T 1xi4_A 218 FAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNR 297 (1630)
T ss_pred EEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEEecCceEEEEecccchhhhhcc
Confidence 11 1267888877543 1110 00 11335677888888888889999999999999999887766
Q ss_pred cCcCCcceEEEEecCCCCeEEEeeCCCcEEEEEecCCcce
Q psy18231 456 GHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQI 495 (540)
Q Consensus 456 ~~~~~v~~~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~ 495 (540)
-....|... +.+....=++.....|.|.--.+.....+
T Consensus 298 is~~~iF~~--~~~~~~~g~~~vnr~G~vl~v~v~~~~iv 335 (1630)
T 1xi4_A 298 ISGETIFVT--APHEATAGIIGVNRKGQVLSVCVEEENII 335 (1630)
T ss_pred ccCCceEEe--ccCCCCCceEEEcCCceEEEEEEccchhh
Confidence 555555544 33333333444556676666655554443
|
| >4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.98 E-value=0.062 Score=49.04 Aligned_cols=106 Identities=12% Similarity=0.047 Sum_probs=53.5
Q ss_pred CCCCCEEEEeeC----C-------CcEEEEcCCCCeeEEEeecCCcce-eEEEEeeCCCeEEEeeCC--------CeEEE
Q psy18231 173 PVDGSYCLTCGS----D-------KKIKLWNPYRNLLLKTYGGHAHEV-NDATAACDSSQIASGASD--------KSVIL 232 (540)
Q Consensus 173 spdg~~lat~~~----d-------g~i~iwd~~~~~~~~~~~~h~~~v-~~l~~sp~~~~l~s~s~d--------g~i~i 232 (540)
..+++.++.|+. + ..+.+||+.+++-...-......- .+++. -+++.++.|+.+ ..+.+
T Consensus 43 ~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~~~~ 121 (315)
T 4asc_A 43 TKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPLPSPRCLFGLGE-ALNSIYVVGGREIKDGERCLDSVMC 121 (315)
T ss_dssp CTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCCBSSCEESCEEEE-ETTEEEEECCEESSTTCCBCCCEEE
T ss_pred EECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCCCCcchhceeEEE-ECCEEEEEeCCcCCCCCcccceEEE
Confidence 347777777773 1 127788887765322111111111 12222 267777777742 46889
Q ss_pred EEcCCCceeEe--ccccCCceeEEEECCCCCEEEEecC-C-----CcEEEEEecCCC
Q psy18231 233 WEVTTGQPVRR--WREHASKVTCVKFNEDSSVVISGSQ-D-----NTVMMWDVKSRS 281 (540)
Q Consensus 233 wd~~~~~~~~~--~~~h~~~v~~~~~~~~~~~l~s~~~-d-----g~i~iwd~~~~~ 281 (540)
||..+.+-... +......-..+. -+++.++.|+. + ..+.+||+.+.+
T Consensus 122 ~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~ 176 (315)
T 4asc_A 122 YDRLSFKWGESDPLPYVVYGHTVLS--HMDLVYVIGGKGSDRKCLNKMCVYDPKKFE 176 (315)
T ss_dssp EETTTTEEEECCCCSSCCBSCEEEE--ETTEEEEECCBCTTSCBCCCEEEEETTTTE
T ss_pred ECCCCCcEeECCCCCCcccceeEEE--ECCEEEEEeCCCCCCcccceEEEEeCCCCe
Confidence 99887653322 111111112222 24566667765 2 346667665543
|
| >2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=96.88 E-value=0.069 Score=48.80 Aligned_cols=92 Identities=14% Similarity=0.216 Sum_probs=47.4
Q ss_pred CeEEEEeCCCCceEEe--eeCCc-eEEEEEecCCcEEEeecCC-----CeEEEEeccccc--hhhhhccCcCCcceEEEE
Q psy18231 398 CRIRRYDIRTGNLVTD--YVGEP-IVDACFTRDCQCILTCSTD-----ECLRLFDKATGE--LLEEYKGHKSGDFRIECC 467 (540)
Q Consensus 398 g~i~iwd~~~~~~~~~--~~~~~-i~~~~~sp~~~~l~~~~~d-----g~i~i~d~~~~~--~~~~~~~~~~~v~~~~~~ 467 (540)
..+.+||+.+.+-... +.... -.+++ .-++++++.|+.+ ..+.+||..+.+ .+..+..... ... +
T Consensus 175 ~~~~~yd~~~~~W~~~~~~p~~r~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~---~~~-~ 249 (318)
T 2woz_A 175 NRVFIYNPKKGDWKDLAPMKTPRSMFGVA-IHKGKIVIAGGVTEDGLSASVEAFDLKTNKWEVMTEFPQERS---SIS-L 249 (318)
T ss_dssp CCEEEEETTTTEEEEECCCSSCCBSCEEE-EETTEEEEEEEEETTEEEEEEEEEETTTCCEEECCCCSSCCB---SCE-E
T ss_pred ceEEEEcCCCCEEEECCCCCCCcccceEE-EECCEEEEEcCcCCCCccceEEEEECCCCeEEECCCCCCccc---ceE-E
Confidence 3588899887653221 11111 11222 2367777777643 357788987653 2222211111 111 1
Q ss_pred ecCCCCeEEEeeCC--------------CcEEEEEecCCcc
Q psy18231 468 LDSKDSQIFCGSSD--------------GKIYKWQLVDSSQ 494 (540)
Q Consensus 468 ~s~~~~~l~s~s~d--------------g~i~iwd~~~~~~ 494 (540)
...++++++.|+.+ ..+.+||+.+.+-
T Consensus 250 ~~~~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W 290 (318)
T 2woz_A 250 VSLAGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKKEW 290 (318)
T ss_dssp EEETTEEEEECCBCCBC----CCBCCBCCCEEEEETTTTEE
T ss_pred EEECCEEEEECCeeccCCCCceeccceeeeEEEEeCCCCEe
Confidence 22356777777654 3577888766543
|
| >3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A | Back alignment and structure |
|---|
Probab=96.82 E-value=0.024 Score=52.85 Aligned_cols=108 Identities=11% Similarity=0.201 Sum_probs=77.4
Q ss_pred CeEEEEeCCCCCEEEEeeCCCcEEEEcCCCCe------------eEEEeec------CCcceeEEEEee---CCCeEEEe
Q psy18231 166 GLMHTRFPVDGSYCLTCGSDKKIKLWNPYRNL------------LLKTYGG------HAHEVNDATAAC---DSSQIASG 224 (540)
Q Consensus 166 ~v~~v~~spdg~~lat~~~dg~i~iwd~~~~~------------~~~~~~~------h~~~v~~l~~sp---~~~~l~s~ 224 (540)
.|..+..||+|++||..+ +..|.|-.+..+. ..+.+.- ...+|..+.|+| .+..|++-
T Consensus 67 ~i~qlvlSpsG~lLAl~g-~~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVL 145 (452)
T 3pbp_A 67 DTFHVISSTSGDLLCLFN-DNEIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVL 145 (452)
T ss_dssp TTCEEEECTTSSEEEEEC-SSEEEEEECCTTCSCCCCHHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEE
T ss_pred ceeEEEECCCCCEEEEec-CCeEEEEEecCccccCcccccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEE
Confidence 577899999999999886 5688888776321 1233332 256799999999 56689999
Q ss_pred eCCCeEEEEEcCCC--ceeEecc---------ccCCceeEEEECCCCCEEEE--ecCCCcEEEE
Q psy18231 225 ASDKSVILWEVTTG--QPVRRWR---------EHASKVTCVKFNEDSSVVIS--GSQDNTVMMW 275 (540)
Q Consensus 225 s~dg~i~iwd~~~~--~~~~~~~---------~h~~~v~~~~~~~~~~~l~s--~~~dg~i~iw 275 (540)
..|++|++||+... ++. .++ .....|.+++|.+++-.|+. .++.|.|.-.
T Consensus 146 tsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ev~S~~Fg~~~lTLYvl~~t~~GDIYAl 208 (452)
T 3pbp_A 146 KEDDTITMFDILNSQEKPI-VLNKPNNSFGLDARVNDITDLEFSKDGLTLYCLNTTEGGDIFAF 208 (452)
T ss_dssp ETTSCEEEEETTCTTSCCE-EESCCCSEEESCSSCCCEEEEEECTTSSCEEEEECTTSCEEEEE
T ss_pred ecCCEEEEEEcccCCCCCc-chhccccccCCCcccceEEEEEEcCCCcEEEEEecCCCCCEEEE
Confidence 99999999999753 122 222 23367889999987766666 4477877654
|
| >3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A | Back alignment and structure |
|---|
Probab=96.80 E-value=0.63 Score=48.37 Aligned_cols=350 Identities=10% Similarity=0.046 Sum_probs=160.3
Q ss_pred CeEEEEeCCCCCEEEEeeCCCcEEEEcCCCCeeEEEeecCCcceeEEEEeeCCCeEEEeeCCCeEEEEEcCCCceeEecc
Q psy18231 166 GLMHTRFPVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPVRRWR 245 (540)
Q Consensus 166 ~v~~v~~spdg~~lat~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~ 245 (540)
.|.++...+++..|..|.. +-+..+|..+++......-....|.++....+|.+.+ |+.+ -+.+++..+++......
T Consensus 192 ~i~~i~~d~~~~~lWigt~-~Gl~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi-gT~~-Gl~~~~~~~~~~~~~~~ 268 (758)
T 3ott_A 192 FVNSLLEDTTRQCVWIGTE-GYLFQYFPSTGQIKQTEAFHNNSIKSLALDGNGDLLA-GTDN-GLYVYHNDTTPLQHIIH 268 (758)
T ss_dssp CEEEEEEETTTTEEEEEEE-EEEEEEETTTTEEEEEEEEEEEEEEEEEECTTCCEEE-EETT-EEEEECCTTSCCEEECC
T ss_pred eeEEEEEECCCCEEEEEEC-CCCeEEcCCCCeEEeccCCCCCeEEEEEEcCCCCEEE-EeCC-ceeEEecCCCcEEEEEc
Confidence 3788888777765555553 4577888877654322111234688887777776544 4444 47788876654432211
Q ss_pred -------ccCCceeEEEECCCCCEEEEecCCCcEEEEEecCCCCCCcchhhhhHhhhhcCCceeEEEEeecccccccccC
Q psy18231 246 -------EHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHLSNG 318 (540)
Q Consensus 246 -------~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (540)
-....|.++....+|. |..|+..| +.++.. ... ........ .. .......+..+.....+.+..+
T Consensus 269 ~~~~~~~l~~~~i~~i~~D~~g~-lWiGT~~G-l~~~~~-~~~---~~~~~~~~-~~-~~~~~~~v~~i~~D~~g~lWiG 340 (758)
T 3ott_A 269 DSRNIQSLTNNIIWNIFADQEHN-IWLGTDYG-ISLSRY-NSA---LQFIPISQ-IT-GTGDGNQFYSLFRDSKGFYWFG 340 (758)
T ss_dssp CTTCTTSCSCSCEEEEEECTTCC-EEEEESSS-EEEECC-CC----CEEEEHHH-HS-CSCCCCBEEEEEECTTCCEEEE
T ss_pred CCCCcCcCCcCeEEEEEEcCCCC-EEEEeCCc-cccccc-CCc---eeEEeccc-CC-CCCCCceEEEEEEcCCCCEEEe
Confidence 1234688988887776 55565566 544422 111 11000000 00 0001112222222222222211
Q ss_pred ceeeEEEeeeec-----------------cc-ccceeeeeeccceeEEEeecccceecccccccccccchh-hhh-hccc
Q psy18231 319 LLTKLVFAFRCK-----------------YL-NGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCF-QAL-KEAR 378 (540)
Q Consensus 319 ~~~~~~~~~~~~-----------------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~ 378 (540)
..... ..+... .+ ...+..+....++.+.+... +.....+........-.. ... ....
T Consensus 341 t~~Gl-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lWigt~-~GL~~~~~~~~~~~~~~~~~~~~~~~~ 418 (758)
T 3ott_A 341 GANGL-IRFTDPAGERHDAIWYRMGDKTYPLSHNRIRHIYEDKEQQLWIATD-GSINRYDYATRQFIHYNIVDNTGTYNT 418 (758)
T ss_dssp ETTEE-EEESCTTSSCCCCEEECTTCSSSCCSCSCEEEEEECTTSCEEEEET-TEEEEEETTTTEEEEEEEECCC--CBS
T ss_pred eCCcc-eeecccccccceeEEeccCCcCCCCCCCceEEEEECCCCCEEEEeC-CcHhhcCcCCCcEEEeecCCCcCCCCC
Confidence 11111 111000 00 11122222222333333221 111111111000000000 000 0023
Q ss_pred ccEEEEEecC-CeeEeeeCCCeEEEEeCCCC-----ceE---Eee------eCCceEEEEEecCCcEEEeecCCCeEEEE
Q psy18231 379 DSITSVHVSD-HEILTASLDCRIRRYDIRTG-----NLV---TDY------VGEPIVDACFTRDCQCILTCSTDECLRLF 443 (540)
Q Consensus 379 ~~v~~l~~~~-~~l~~~~~dg~i~iwd~~~~-----~~~---~~~------~~~~i~~~~~sp~~~~l~~~~~dg~i~i~ 443 (540)
..|.++..++ ..|..|+..+-|.++|.++. ... ..+ ....|.++...++|++.+.++..+-+..+
T Consensus 419 ~~v~~i~~d~~g~lWigT~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~~~t~~Gl~~~ 498 (758)
T 3ott_A 419 NWTYYIFEDTAGQLWISTCLGGIFVVDKHKLMQSTSGQYIAEQNYSVHNGLSGMFINQIIPDNEGNVWVLLYNNKGIDKI 498 (758)
T ss_dssp SSEEEEEECTTSEEEEEESSSCEEEEEHHHHHHCCSSEEECSEEECGGGTCSCSCEEEEEECTTSCEEEEETTCSSEEEE
T ss_pred ceEEEEEEcCCCCEEEEECCCceEEEccccccccCCcceecccccccccccccceeeeEEEcCCCCEEEEccCCCCcEEE
Confidence 4578888776 77888888777888886531 111 111 12358899999999877633333458888
Q ss_pred eccccchhhhhc-cC--cCCcceEEEEecCCCCeEEEeeCCCcEEEEEecCCcceeEEEecccceeeeEEEEcCCCcEEE
Q psy18231 444 DKATGELLEEYK-GH--KSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIM 520 (540)
Q Consensus 444 d~~~~~~~~~~~-~~--~~~v~~~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~ 520 (540)
|..+++...... .. ...+.++ ....+|.+.+ |+..| +..||..+.+....-...-....|.++... +|.+.+
T Consensus 499 d~~~~~~~~~~~~~~~~~~~~~~i--~~d~~g~lWi-gt~~G-l~~~~~~~~~~~~~~~~gl~~~~i~~i~~~-~g~lWi 573 (758)
T 3ott_A 499 NPRTREVTKLFADELTGEKSPNYL--LCDEDGLLWV-GFHGG-VMRINPKDESQQSISFGSFSNNEILSMTCV-KNSIWV 573 (758)
T ss_dssp ETTTTEEEEECTTTSCGGGCEEEE--EECTTSCEEE-EETTE-EEEECC--CCCCBCCCCC---CCEEEEEEE-TTEEEE
T ss_pred eCCCCceEEecCCCcCCCcccceE--EECCCCCEEE-EecCc-eEEEecCCCceEEecccCCCccceEEEEEC-CCCEEE
Confidence 987665332111 11 1223333 5666776544 44444 788886655432110000112457777664 665555
Q ss_pred eecCCeeEEEEccc
Q psy18231 521 SACGNNVKLWTAEE 534 (540)
Q Consensus 521 s~~d~~i~iw~~~~ 534 (540)
++..| |..++.++
T Consensus 574 ~t~~G-l~~~~~~~ 586 (758)
T 3ott_A 574 STTNG-LWIIDRKT 586 (758)
T ss_dssp EESSC-EEEEETTT
T ss_pred ECCCC-eEEEcCCC
Confidence 44344 55556543
|
| >3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A* | Back alignment and structure |
|---|
Probab=96.74 E-value=0.17 Score=46.66 Aligned_cols=147 Identities=9% Similarity=0.061 Sum_probs=85.6
Q ss_pred EEEEecC-CeeEeee-------------CCCeEEEEeCCCC--ce-EEeeeC-------CceEEEEEec--CCc--EEEe
Q psy18231 382 TSVHVSD-HEILTAS-------------LDCRIRRYDIRTG--NL-VTDYVG-------EPIVDACFTR--DCQ--CILT 433 (540)
Q Consensus 382 ~~l~~~~-~~l~~~~-------------~dg~i~iwd~~~~--~~-~~~~~~-------~~i~~~~~sp--~~~--~l~~ 433 (540)
..+...+ ..+++++ .+|.|.++|+++. +. ...+.+ -....+.+.+ ++. ++++
T Consensus 53 EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~Vv 132 (355)
T 3sre_A 53 EDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVV 132 (355)
T ss_dssp CEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEEEE
T ss_pred ceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEEEE
Confidence 3445555 5555555 6899999999743 22 112222 2566777766 343 4444
Q ss_pred ecC--CCeEEEEeccccc----hhhhhccCcCCcceEEEEecCCCCeEEEee-----------------CCCcEEEEEec
Q psy18231 434 CST--DECLRLFDKATGE----LLEEYKGHKSGDFRIECCLDSKDSQIFCGS-----------------SDGKIYKWQLV 490 (540)
Q Consensus 434 ~~~--dg~i~i~d~~~~~----~~~~~~~~~~~v~~~~~~~s~~~~~l~s~s-----------------~dg~i~iwd~~ 490 (540)
-.. +.+|.+|++.... .+.++.+.. -...-.....++|++.++.. ..|.|+-+|
T Consensus 133 nh~~~~s~ielf~~d~~~~~~~~~~~~~g~~-~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d-- 209 (355)
T 3sre_A 133 NHPGSSSTVEVFKFQEEEKSLLHLKTIRHKL-LPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYS-- 209 (355)
T ss_dssp ECSTTCCEEEEEEEETTTTEEEEEEEECCTT-CSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEEC--
T ss_pred ECCCCCCeEEEEEEECCCCEEEEEeccccCC-CCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEE--
Confidence 333 5678888776532 223333321 11222337778898777754 124454444
Q ss_pred CCcceeEEEecccceeeeEEEEcCCCcEEEeec--CCeeEEEEccc
Q psy18231 491 DSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC--GNNVKLWTAEE 534 (540)
Q Consensus 491 ~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~--d~~i~iw~~~~ 534 (540)
.++ +..+. ..-...+.++||||++.|..+. .+.|..|++..
T Consensus 210 ~~~-~~~~~--~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~ 252 (355)
T 3sre_A 210 PND-VRVVA--EGFDFANGINISPDGKYVYIAELLAHKIHVYEKHA 252 (355)
T ss_dssp TTC-CEEEE--EEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECT
T ss_pred CCe-EEEee--cCCcccCcceECCCCCEEEEEeCCCCeEEEEEECC
Confidence 343 33333 2345679999999998887776 78999999864
|
| >2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=96.65 E-value=0.082 Score=49.23 Aligned_cols=92 Identities=9% Similarity=0.049 Sum_probs=45.2
Q ss_pred CCCEEEEeeC-CCcEEEEcCCCC-eeEEEeec-C-Ccce-eEEEEeeCCCeEEEeeC-C---------CeEEEEEcCCCc
Q psy18231 175 DGSYCLTCGS-DKKIKLWNPYRN-LLLKTYGG-H-AHEV-NDATAACDSSQIASGAS-D---------KSVILWEVTTGQ 239 (540)
Q Consensus 175 dg~~lat~~~-dg~i~iwd~~~~-~~~~~~~~-h-~~~v-~~l~~sp~~~~l~s~s~-d---------g~i~iwd~~~~~ 239 (540)
+++..+.|+. ...+.++|+.+. ..-..+.. . .... .+++. -++++++.|+. + ..+.+||..+.+
T Consensus 19 ~~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~~ 97 (357)
T 2uvk_A 19 NDTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQATSAF-IDGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNS 97 (357)
T ss_dssp TTEEEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCCBSCEEEE-ETTEEEEECCEEECTTSCEEECCCEEEEETTTTE
T ss_pred CCEEEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcCccceEEE-ECCEEEEEcCCCCCCCccceeeccEEEEeCCCCc
Confidence 5666666654 346888887641 11222211 1 1111 12222 36777777776 2 468889988765
Q ss_pred eeEec--c-ccCCceeEEEECCCCCEEEEecCC
Q psy18231 240 PVRRW--R-EHASKVTCVKFNEDSSVVISGSQD 269 (540)
Q Consensus 240 ~~~~~--~-~h~~~v~~~~~~~~~~~l~s~~~d 269 (540)
-...- . .....-.++. .++++++.|+.+
T Consensus 98 W~~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~ 128 (357)
T 2uvk_A 98 WVKLMSHAPMGMAGHVTFV--HNGKAYVTGGVN 128 (357)
T ss_dssp EEECSCCCSSCCSSEEEEE--ETTEEEEEECCC
T ss_pred EEECCCCCCcccccceEEE--ECCEEEEEeCcC
Confidence 43321 1 1111112222 356666777654
|
| >1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1 | Back alignment and structure |
|---|
Probab=96.57 E-value=0.5 Score=44.22 Aligned_cols=256 Identities=14% Similarity=0.139 Sum_probs=143.9
Q ss_pred CCcEEEEcCCCCeeEEEeecCCcceeEEEEeeCCCeEEEeeCCCeEEEEEcCCCceeEeccccCCceeEEEECCCCCEEE
Q psy18231 185 DKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVI 264 (540)
Q Consensus 185 dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~ 264 (540)
+.+|.|.|+.++..+.+..- .-.+.-.+|..+.+|.-. ..+++|+|+++.+.+..+.-. ..|.-=.|-.+ +.|+
T Consensus 47 ~~~vvIiDl~~~~~~~rrpi---~AdsAIMnP~~~iiALra-g~~lQiFnle~K~klks~~~~-e~VvfWkWis~-~~l~ 120 (494)
T 1bpo_A 47 QAQVVIIDMNDPSNPIRRPI---SADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMT-DDVTFWKWISL-NTVA 120 (494)
T ss_dssp CCEEEEEETTSTTSCEEEEC---CCSEEEECSSSSCEEEEE-TTEEEEEETTTTEEEEEEECS-SCCCEEEEEET-TEEE
T ss_pred CCeEEEEECCCCCcceeccc---ccceeeeCCCCcEEEEec-CCeEEEEchHHhhhhcceecC-CCceEEEecCC-CeEE
Confidence 44788889887654433221 123456788888777665 689999999999888776543 45666666543 3555
Q ss_pred EecCCCcEEEEEecCCCCCCcchhhhhHhhhhcCCceeEEEEeecccccccccCceeeEEEeeeecccccceeeeeeccc
Q psy18231 265 SGSQDNTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQ 344 (540)
Q Consensus 265 s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (540)
..+ +..|.-|+++... .|.........
T Consensus 121 lVT-~taVyHWsi~~~s-~P~kvFdR~~~--------------------------------------------------- 147 (494)
T 1bpo_A 121 LVT-DNAVYHWSMEGES-QPVKMFDRHSS--------------------------------------------------- 147 (494)
T ss_dssp EEC-SSEEEEEESSSSC-CCEEEEECCGG---------------------------------------------------
T ss_pred EEc-CCeeEEecccCCC-Cchhheecchh---------------------------------------------------
Confidence 554 4689999997632 22221111110
Q ss_pred eeEEEeecccceecccccccccccchhhhhhcccccEEEEEecC--CeeEeee-------CCCeEEEEeCCCCceEEeee
Q psy18231 345 HLMVLLDFLGSTQIGDVTPISIHNSCFQALKEARDSITSVHVSD--HEILTAS-------LDCRIRRYDIRTGNLVTDYV 415 (540)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~--~~l~~~~-------~dg~i~iwd~~~~~~~~~~~ 415 (540)
+. ...|.....++ ++++..+ -.|.+.+|..+. +..+.+.
T Consensus 148 -----------------------------L~--~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er-~~sQ~ie 195 (494)
T 1bpo_A 148 -----------------------------LA--GCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDR-KVSQPIE 195 (494)
T ss_dssp -----------------------------GT--TCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTT-CCEEEEC
T ss_pred -----------------------------cc--cceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccc-cccchhe
Confidence 00 12233333333 3332221 246788998874 3445555
Q ss_pred CCceEEEEEecCC-----cEEEeecC---CCeEEEEecccc-chhhhh---------ccCcCCcceEEEEecCCCCeEEE
Q psy18231 416 GEPIVDACFTRDC-----QCILTCST---DECLRLFDKATG-ELLEEY---------KGHKSGDFRIECCLDSKDSQIFC 477 (540)
Q Consensus 416 ~~~i~~~~~sp~~-----~~l~~~~~---dg~i~i~d~~~~-~~~~~~---------~~~~~~v~~~~~~~s~~~~~l~s 477 (540)
+|...-..+-.+| +++..+.. .+.++|.++... ..-..| ......-.-+.+..|+.-..++.
T Consensus 196 Ghaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyv 275 (494)
T 1bpo_A 196 GHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFL 275 (494)
T ss_dssp CSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEE
T ss_pred eeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEE
Confidence 5543333333333 23333332 378999988543 100111 11111112344467777778889
Q ss_pred eeCCCcEEEEEecCCcceeEEEecccceeeeEEEEcCCCcEEEeec-CCeeEEEEcc
Q psy18231 478 GSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC-GNNVKLWTAE 533 (540)
Q Consensus 478 ~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~-d~~i~iw~~~ 533 (540)
-+.-|.|.+||++++.++..-+ -...+|..-+-..+..=++... .|.|.--.++
T Consensus 276 iTK~G~i~lyDleTgt~i~~nr--Is~~~iF~t~~~~~~~Gi~~Vnr~GqVl~v~v~ 330 (494)
T 1bpo_A 276 ITKYGYIHLYDLETGTCIYMNR--ISGETIFVTAPHEATAGIIGVNRKGQVLSVCVE 330 (494)
T ss_dssp EETTSEEEEEETTTCCEEEEEE--CCSSCEEEEEEETTTTEEEEEETTCEEEEEEEC
T ss_pred EecCceEEEEecccceeeeeec--ccCCceEEecccCCCCcEEEEccCceEEEEEEc
Confidence 9999999999999999988877 4455565555444433333333 6665544443
|
| >2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=96.54 E-value=0.22 Score=45.41 Aligned_cols=105 Identities=9% Similarity=0.072 Sum_probs=52.7
Q ss_pred CCCCCEEEEeeC----CC-------cEEEEcCCCCeeEEE--eecCCcceeEEEEeeCCCeEEEeeCC-------CeEEE
Q psy18231 173 PVDGSYCLTCGS----DK-------KIKLWNPYRNLLLKT--YGGHAHEVNDATAACDSSQIASGASD-------KSVIL 232 (540)
Q Consensus 173 spdg~~lat~~~----dg-------~i~iwd~~~~~~~~~--~~~h~~~v~~l~~sp~~~~l~s~s~d-------g~i~i 232 (540)
..+++.++.|+. ++ .+.+||..+.+-... +...... .+++. -+++.++.|+.+ ..+.+
T Consensus 54 ~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~-~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~ 131 (318)
T 2woz_A 54 TQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCL-FGLGE-VDDKIYVVAGKDLQTEASLDSVLC 131 (318)
T ss_dssp CSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCBCS-CEEEE-ETTEEEEEEEEBTTTCCEEEEEEE
T ss_pred EECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCccccc-cceEE-ECCEEEEEcCccCCCCcccceEEE
Confidence 456777777773 12 177888877654322 1111111 12222 267777777754 35788
Q ss_pred EEcCCCceeEe--ccccCCceeEEEECCCCCEEEEecCC------CcEEEEEecCCC
Q psy18231 233 WEVTTGQPVRR--WREHASKVTCVKFNEDSSVVISGSQD------NTVMMWDVKSRS 281 (540)
Q Consensus 233 wd~~~~~~~~~--~~~h~~~v~~~~~~~~~~~l~s~~~d------g~i~iwd~~~~~ 281 (540)
||..+.+-... +......-..+. .++.+++.|+.+ ..+.+||+.+.+
T Consensus 132 yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~ 186 (318)
T 2woz_A 132 YDPVAAKWSEVKNLPIKVYGHNVIS--HNGMIYCLGGKTDDKKCTNRVFIYNPKKGD 186 (318)
T ss_dssp EETTTTEEEEECCCSSCEESCEEEE--ETTEEEEECCEESSSCBCCCEEEEETTTTE
T ss_pred EeCCCCCEeECCCCCCcccccEEEE--ECCEEEEEcCCCCCCCccceEEEEcCCCCE
Confidence 88877654332 111111111122 256666666542 346677766543
|
| >3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=96.54 E-value=0.47 Score=43.53 Aligned_cols=107 Identities=12% Similarity=0.019 Sum_probs=64.7
Q ss_pred ecCeEEEEeCCCCCEEEEeeCCCcEEEEcCCCCee--EEEe----ecCCcceeEEEEeeC----CCeEEEe--eCCCeEE
Q psy18231 164 LSGLMHTRFPVDGSYCLTCGSDKKIKLWNPYRNLL--LKTY----GGHAHEVNDATAACD----SSQIASG--ASDKSVI 231 (540)
Q Consensus 164 ~~~v~~v~~spdg~~lat~~~dg~i~iwd~~~~~~--~~~~----~~h~~~v~~l~~sp~----~~~l~s~--s~dg~i~ 231 (540)
...-..|+|.|||+++++--..|.|++++..+++. +..+ .........++++|+ +.+.++- ..++.|.
T Consensus 31 L~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v~ 110 (347)
T 3das_A 31 LNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNRIV 110 (347)
T ss_dssp CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEEEE
T ss_pred CCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCEEE
Confidence 35567999999999776655489999998765543 2222 123466789999995 4443432 2445666
Q ss_pred EEEcCCCc----------ee-Eecc-ccCCceeEEEECCCCCEEEEecCCC
Q psy18231 232 LWEVTTGQ----------PV-RRWR-EHASKVTCVKFNEDSSVVISGSQDN 270 (540)
Q Consensus 232 iwd~~~~~----------~~-~~~~-~h~~~v~~~~~~~~~~~l~s~~~dg 270 (540)
-|.+..+. .+ ..+. .....-..|.|.|||.+.++.+..+
T Consensus 111 R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~ 161 (347)
T 3das_A 111 RMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESG 161 (347)
T ss_dssp EEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTT
T ss_pred EEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCC
Confidence 66665421 11 1121 1122346788999988777665433
|
| >3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A | Back alignment and structure |
|---|
Probab=96.51 E-value=0.27 Score=45.88 Aligned_cols=66 Identities=21% Similarity=0.243 Sum_probs=50.2
Q ss_pred ccccEEEEEecC-----CeeEeeeCCCeEEEEeCCCCc--eEEeee------C-----CceEEEEEecCCcEEEeec--C
Q psy18231 377 ARDSITSVHVSD-----HEILTASLDCRIRRYDIRTGN--LVTDYV------G-----EPIVDACFTRDCQCILTCS--T 436 (540)
Q Consensus 377 ~~~~v~~l~~~~-----~~l~~~~~dg~i~iwd~~~~~--~~~~~~------~-----~~i~~~~~sp~~~~l~~~~--~ 436 (540)
...+|..+.|+| ..|++-..|+.|++||+.... +. .+. + ..|.+++|.+++-.|.+.+ .
T Consensus 123 ~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ev~S~~Fg~~~lTLYvl~~t~ 201 (452)
T 3pbp_A 123 PKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI-VLNKPNNSFGLDARVNDITDLEFSKDGLTLYCLNTTE 201 (452)
T ss_dssp CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE-EESCCCSEEESCSSCCCEEEEEECTTSSCEEEEECTT
T ss_pred CCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc-chhccccccCCCcccceEEEEEEcCCCcEEEEEecCC
Confidence 357899999999 579999999999999998522 11 221 1 4689999999887777744 7
Q ss_pred CCeEEEE
Q psy18231 437 DECLRLF 443 (540)
Q Consensus 437 dg~i~i~ 443 (540)
+|.|+-.
T Consensus 202 ~GDIYAl 208 (452)
T 3pbp_A 202 GGDIFAF 208 (452)
T ss_dssp SCEEEEE
T ss_pred CCCEEEE
Confidence 8888654
|
| >3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A | Back alignment and structure |
|---|
Probab=96.51 E-value=0.98 Score=46.89 Aligned_cols=354 Identities=10% Similarity=0.045 Sum_probs=170.3
Q ss_pred cCeEEEEeCCCCCEEEEeeCCCcEEEEcCCCCeeEEEe-ecC----CcceeEEEEeeCCCeEEEeeCCCeEEEEEcCCCc
Q psy18231 165 SGLMHTRFPVDGSYCLTCGSDKKIKLWNPYRNLLLKTY-GGH----AHEVNDATAACDSSQIASGASDKSVILWEVTTGQ 239 (540)
Q Consensus 165 ~~v~~v~~spdg~~lat~~~dg~i~iwd~~~~~~~~~~-~~h----~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~ 239 (540)
..|.++....+|.+.+ |+.+ -+..++..+++..... ... ...|.++...+++..|..|+. +-+..+|..+++
T Consensus 146 ~~i~~i~~d~~g~lWi-gt~~-Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~-~Gl~~~~~~~~~ 222 (758)
T 3ott_A 146 NTIYSIIRTKDNQIYV-GTYN-GLCRYIPSNGKFEGIPLPVHSSQSNLFVNSLLEDTTRQCVWIGTE-GYLFQYFPSTGQ 222 (758)
T ss_dssp SCEEEEEECTTCCEEE-EETT-EEEEEETTTTEEEEECCCCCTTCSSCCEEEEEEETTTTEEEEEEE-EEEEEEETTTTE
T ss_pred CeEEEEEEcCCCCEEE-EeCC-CHhhCccCCCceEEecCCCccccccceeEEEEEECCCCEEEEEEC-CCCeEEcCCCCe
Confidence 4588888888887655 4444 4777887766543211 111 224788877766665555554 457888877665
Q ss_pred eeEeccccCCceeEEEECCCCCEEEEecCCCcEEEEEecCCCCCCcchhhhhHhhhhcCCceeEEEEeecccccccccCc
Q psy18231 240 PVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHLSNGL 319 (540)
Q Consensus 240 ~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (540)
...........|.++....+|.+.+ |+.+ -+.+++..+.+........ . .........+..+.....+.+-.+.
T Consensus 223 ~~~~~~l~~~~i~~i~~d~~g~lWi-gT~~-Gl~~~~~~~~~~~~~~~~~--~--~~~~l~~~~i~~i~~D~~g~lWiGT 296 (758)
T 3ott_A 223 IKQTEAFHNNSIKSLALDGNGDLLA-GTDN-GLYVYHNDTTPLQHIIHDS--R--NIQSLTNNIIWNIFADQEHNIWLGT 296 (758)
T ss_dssp EEEEEEEEEEEEEEEEECTTCCEEE-EETT-EEEEECCTTSCCEEECCCT--T--CTTSCSCSCEEEEEECTTCCEEEEE
T ss_pred EEeccCCCCCeEEEEEEcCCCCEEE-EeCC-ceeEEecCCCcEEEEEcCC--C--CcCcCCcCeEEEEEEcCCCCEEEEe
Confidence 3322112234688888887776544 4544 4777776654321111000 0 0000011122222222222222111
Q ss_pred eeeEEEe--------eeec-----ccccceeeeeeccceeEEEeecccceeccccccccc-ccchhh----hhhcccccE
Q psy18231 320 LTKLVFA--------FRCK-----YLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISI-HNSCFQ----ALKEARDSI 381 (540)
Q Consensus 320 ~~~~~~~--------~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~----~~~~~~~~v 381 (540)
....... .... .....+..+....++.+.+....|.... +...... ...... ...-....|
T Consensus 297 ~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~D~~g~lWiGt~~Gl~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~v 375 (758)
T 3ott_A 297 DYGISLSRYNSALQFIPISQITGTGDGNQFYSLFRDSKGFYWFGGANGLIRF-TDPAGERHDAIWYRMGDKTYPLSHNRI 375 (758)
T ss_dssp SSSEEEECCCC-CEEEEHHHHSCSCCCCBEEEEEECTTCCEEEEETTEEEEE-SCTTSSCCCCEEECTTCSSSCCSCSCE
T ss_pred CCcccccccCCceeEEecccCCCCCCCceEEEEEEcCCCCEEEeeCCcceee-cccccccceeEEeccCCcCCCCCCCce
Confidence 1111100 0000 0011122222233333333322111111 0000000 000000 000123458
Q ss_pred EEEEecC-CeeEeeeCCCeEEEEeCCCCceEEee--------eCCceEEEEEecCCcEEEeecCCCeEEEEecccc----
Q psy18231 382 TSVHVSD-HEILTASLDCRIRRYDIRTGNLVTDY--------VGEPIVDACFTRDCQCILTCSTDECLRLFDKATG---- 448 (540)
Q Consensus 382 ~~l~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~--------~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~---- 448 (540)
.++.-+. ..|..|+ ++-|..||.++++...-. ....|.++...++|++. .|+..+-+.++|..+.
T Consensus 376 ~~i~~d~~g~lWigt-~~GL~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lW-igT~~~Gl~~~~~~~~~~~~ 453 (758)
T 3ott_A 376 RHIYEDKEQQLWIAT-DGSINRYDYATRQFIHYNIVDNTGTYNTNWTYYIFEDTAGQLW-ISTCLGGIFVVDKHKLMQST 453 (758)
T ss_dssp EEEEECTTSCEEEEE-TTEEEEEETTTTEEEEEEEECCC--CBSSSEEEEEECTTSEEE-EEESSSCEEEEEHHHHHHCC
T ss_pred EEEEECCCCCEEEEe-CCcHhhcCcCCCcEEEeecCCCcCCCCCceEEEEEEcCCCCEE-EEECCCceEEEccccccccC
Confidence 8888776 6677777 457999999877653321 12357888877777654 4665556888885431
Q ss_pred -chh---hhhc---c-CcCCcceEEEEecCCCCeEEEeeCCCcEEEEEecCCcceeEEEecc--cceeeeEEEEcCCCcE
Q psy18231 449 -ELL---EEYK---G-HKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSV--GKAVVNSLCSHPTRKH 518 (540)
Q Consensus 449 -~~~---~~~~---~-~~~~v~~~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~--~~~~v~~l~~s~d~~~ 518 (540)
... ..+. + ....|..+ ...++|.+.+.++..+-|..+|..+++.. .+.... ....+.++....+|.+
T Consensus 454 ~~~~~~~~~~~~~~~l~~~~i~~i--~~d~~g~lWi~~~t~~Gl~~~d~~~~~~~-~~~~~~~~~~~~~~~i~~d~~g~l 530 (758)
T 3ott_A 454 SGQYIAEQNYSVHNGLSGMFINQI--IPDNEGNVWVLLYNNKGIDKINPRTREVT-KLFADELTGEKSPNYLLCDEDGLL 530 (758)
T ss_dssp SSEEECSEEECGGGTCSCSCEEEE--EECTTSCEEEEETTCSSEEEEETTTTEEE-EECTTTSCGGGCEEEEEECTTSCE
T ss_pred CcceecccccccccccccceeeeE--EEcCCCCEEEEccCCCCcEEEeCCCCceE-EecCCCcCCCcccceEEECCCCCE
Confidence 100 0111 1 11224444 67778876653333455888887665433 332101 1346788888888887
Q ss_pred EEeecCCeeEEEEccc
Q psy18231 519 IMSACGNNVKLWTAEE 534 (540)
Q Consensus 519 l~s~~d~~i~iw~~~~ 534 (540)
.+++.+ -+..++..+
T Consensus 531 Wigt~~-Gl~~~~~~~ 545 (758)
T 3ott_A 531 WVGFHG-GVMRINPKD 545 (758)
T ss_dssp EEEETT-EEEEECC--
T ss_pred EEEecC-ceEEEecCC
Confidence 765544 477777643
|
| >2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=96.44 E-value=0.57 Score=43.39 Aligned_cols=61 Identities=5% Similarity=-0.024 Sum_probs=39.3
Q ss_pred CCCeEEEeeCCCcEEEEEecCCcceeEEEe-cccceeeeEEEEcCCCcEEEeec--CCeeEEEEcc
Q psy18231 471 KDSQIFCGSSDGKIYKWQLVDSSQISTLIH-SVGKAVVNSLCSHPTRKHIMSAC--GNNVKLWTAE 533 (540)
Q Consensus 471 ~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~-~~~~~~v~~l~~s~d~~~l~s~~--d~~i~iw~~~ 533 (540)
+|.++++.-..+.|...++..++....... ......+..+++.|||.+.++.. +| +||.+.
T Consensus 288 ~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~lyv~td~~~g--~I~ri~ 351 (353)
T 2g8s_A 288 QQKLFIGALKDKDVIVMSVNGDKVTEDGRILTDRGQRIRDVRTGPDGYLYVLTDESSG--ELLKVS 351 (353)
T ss_dssp TTEEEEEETTTTEEEEEEEETTEEEEEEEESGGGCCCEEEEEECTTSCEEEEECSTTE--EEEEEE
T ss_pred CCcEEEEEccCCEEEEEEeCCCeEeeeEEcccCCCCceeEEEECCCCcEEEEEeCCCC--EEEEEe
Confidence 466777766778888888876654433221 12234789999999999777644 45 455543
|
| >2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.41 E-value=0.033 Score=50.89 Aligned_cols=106 Identities=9% Similarity=0.003 Sum_probs=58.7
Q ss_pred CCeeEeeeCCCeEEEEeCCCCceEEeeeCCceE---------EEEEe-----cCCcEEEeecCCCeEEEEeccccchhhh
Q psy18231 388 DHEILTASLDCRIRRYDIRTGNLVTDYVGEPIV---------DACFT-----RDCQCILTCSTDECLRLFDKATGELLEE 453 (540)
Q Consensus 388 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~i~---------~~~~s-----p~~~~l~~~~~dg~i~i~d~~~~~~~~~ 453 (540)
...+++++.+|.+.-.|+++|+.+.++...... |.... ..+..++.+..+..+.+.+ ++|+ +..
T Consensus 111 ~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~~~~~v~ig~~~y~v~~~~-~sG~-~W~ 188 (339)
T 2be1_A 111 DEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIKLQECENMIVIGKTIFELGIHS-YDGA-SYN 188 (339)
T ss_dssp CEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC--------------------CCEEEEEEEEEECEECC-TTSC-CCC
T ss_pred CCEEEEEecCCEEEEEECCCCcEEEEEecCCCcccccccccccccccccccccCCCeEEEecceEEEEEEC-CCCC-eEE
Confidence 467899999999999999999999888643211 11111 1235666777667777666 3443 221
Q ss_pred hccC--cCCcce--E--EEEecCCCCeEEEeeCCCcEEEEEecCCccee
Q psy18231 454 YKGH--KSGDFR--I--ECCLDSKDSQIFCGSSDGKIYKWQLVDSSQIS 496 (540)
Q Consensus 454 ~~~~--~~~v~~--~--~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~ 496 (540)
++-. ...... + ....+.|+.+ +.++.||.|.-+|..+|+.+-
T Consensus 189 ~~~s~~~~~~~~~~~~~~~~~s~Dg~~-~~~~~dg~v~A~d~~~G~~~W 236 (339)
T 2be1_A 189 VTYSTWQQNVLDVPLALQNTFSKDGMC-IAPFRDKSLLASDLDFRIARW 236 (339)
T ss_dssp CEEEEEECCTTTHHHHTTCSSCSSSCC-EEEETTTEEEEECSTTCCEEE
T ss_pred EecccccccccccccccccccccCCcE-EEECCCCEEEEEECCCCcEEE
Confidence 1100 000000 0 0011234555 446778888888877776654
|
| >2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=96.41 E-value=0.26 Score=45.71 Aligned_cols=133 Identities=14% Similarity=-0.021 Sum_probs=60.7
Q ss_pred CeEEEEeCCCCceEE--eeeCC-ce-EEEEEecCCcEEEeecC------CCeEEEEec--ccc--chhhhhccCcCCcce
Q psy18231 398 CRIRRYDIRTGNLVT--DYVGE-PI-VDACFTRDCQCILTCST------DECLRLFDK--ATG--ELLEEYKGHKSGDFR 463 (540)
Q Consensus 398 g~i~iwd~~~~~~~~--~~~~~-~i-~~~~~sp~~~~l~~~~~------dg~i~i~d~--~~~--~~~~~~~~~~~~v~~ 463 (540)
..+.+||..+.+-.. .+... .. .+++. -++++++.|+. ...+.+||+ .+. +.+..+.........
T Consensus 168 ~~v~~yd~~~~~W~~~~~~p~~~~~~~~~~~-~~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~~~~~~~~~~~~ 246 (357)
T 2uvk_A 168 KFLLSFDPSTQQWSYAGESPWYGTAGAAVVN-KGDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSSPDGVAGG 246 (357)
T ss_dssp CEEEEEETTTTEEEEEEECSSCCCBSCEEEE-ETTEEEEECCEEETTEECCCEEEEECC---CEEEECCCSSTTTCCBSC
T ss_pred ccEEEEeCCCCcEEECCCCCCCCcccccEEE-ECCEEEEEeeecCCCcccCceEEEEecCCCCcEEecCCCCCCcccccc
Confidence 468889988765322 22211 11 22332 36677777764 345777876 332 222222111111111
Q ss_pred EEEEecCCCCeEEEeeCC----------------------CcEEEEEecCCcceeEEEecccceeeeEEEEcCCCcEEEe
Q psy18231 464 IECCLDSKDSQIFCGSSD----------------------GKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMS 521 (540)
Q Consensus 464 ~~~~~s~~~~~l~s~s~d----------------------g~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s 521 (540)
. +...++++++.|+.+ ..+.+||+.+.+-...-..+.....-.++ .-++++++.
T Consensus 247 ~--~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~--~~~~~i~v~ 322 (357)
T 2uvk_A 247 F--AGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGELSQGRAYGVSL--PWNNSLLII 322 (357)
T ss_dssp E--EEEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEEECSSCCBSSEEE--EETTEEEEE
T ss_pred e--EEEECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeCCCCCCCcccceeE--EeCCEEEEE
Confidence 1 222356777777632 25788998765432222211222212222 246788888
Q ss_pred ec-CC------eeEEEEcccc
Q psy18231 522 AC-GN------NVKLWTAEED 535 (540)
Q Consensus 522 ~~-d~------~i~iw~~~~~ 535 (540)
|+ ++ .|.+.+++++
T Consensus 323 GG~~~~~~~~~~v~~l~~~~~ 343 (357)
T 2uvk_A 323 GGETAGGKAVTDSVLITVKDN 343 (357)
T ss_dssp EEECGGGCEEEEEEEEEC-CC
T ss_pred eeeCCCCCEeeeEEEEEEcCc
Confidence 77 53 3444466543
|
| >3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A | Back alignment and structure |
|---|
Probab=96.37 E-value=0.8 Score=44.32 Aligned_cols=306 Identities=10% Similarity=0.074 Sum_probs=155.8
Q ss_pred EEEeeCCCcEEEEcCCCCeeEEEeecCC-------------------------ccee--EEEEe---eCCCeEEEeeC-C
Q psy18231 179 CLTCGSDKKIKLWNPYRNLLLKTYGGHA-------------------------HEVN--DATAA---CDSSQIASGAS-D 227 (540)
Q Consensus 179 lat~~~dg~i~iwd~~~~~~~~~~~~h~-------------------------~~v~--~l~~s---p~~~~l~s~s~-d 227 (540)
+.+|+..|.|+|+-+.+++.++.+.... +... .+++. .||++|+.-.. +
T Consensus 73 f~SgG~sG~v~v~G~PSmR~l~~IpVF~~~~~~G~G~t~esk~il~~~~~~~~gD~HHp~~S~tdg~yDGrylfiNdkan 152 (638)
T 3sbq_A 73 FWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGLTNESRHIMGDSAKFLNGDCHHPHISMTDGKYDGKYLFINDKAN 152 (638)
T ss_dssp EEECGGGCCEEEEEETTTEEEEEECSSSCCTTTCTTTBHHHHHHHGGGGGCCCCCCCCCEEEEETTEEEEEEEEEEETTT
T ss_pred EeecCcCceEEEEecCCcceEEEeecccCCCCcccCCchhHHHHHhcCCCccCCCcCCCcccccCCeeeeEEEEEecCCC
Confidence 5688999999999999998888763211 1111 23332 26777877664 5
Q ss_pred CeEEEEEcCCCceeEecc-ccCCceeEEEEC--CCCCEEEEecCCCcEEEEEecCCCCCCcchhhhhHhhhhcCCceeEE
Q psy18231 228 KSVILWEVTTGQPVRRWR-EHASKVTCVKFN--EDSSVVISGSQDNTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSV 304 (540)
Q Consensus 228 g~i~iwd~~~~~~~~~~~-~h~~~v~~~~~~--~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (540)
..|-.-++...++-+.+. .....+..+.|. |+..+++.+++.. +-+ ...+...++. . .... .+
T Consensus 153 ~RvAri~l~~~~~d~Ii~iPn~~~~Hg~~~~~~p~T~yv~~~~e~~-~P~--pndg~~~~~~-----~-----~~~y-~~ 218 (638)
T 3sbq_A 153 SRVARIRLDIMKCDKMITVPNVQAIHGLRLQKVPHTKYVFANAEFI-IPH--PNDGKVFDLQ-----D-----ENSY-TM 218 (638)
T ss_dssp TEEEEEETTTTEEEEEEECTTCSCEEEEEECCSSBCCEEEEEECSC-EES--SCSSSCCCTT-----S-----TTEE-EE
T ss_pred cceEEEECCcEeeceeEeCCCCcCcccccccccCCccEEEecceee-ccC--CCCCcccccC-----C-----hhhc-eE
Confidence 677778888777665544 346678888886 6778888887642 211 0111100000 0 0000 11
Q ss_pred EEeecccccccccCceeeEEEeeeecccccceeeeeeccceeEEEeecccceecccccccccccchhhhhhcccccEEEE
Q psy18231 305 HSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEARDSITSV 384 (540)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l 384 (540)
...... ....+ .|+.. ..+.+.......++.+.+....++.....+.. ......+.+.-+
T Consensus 219 f~~iD~--------~tm~v--~~Qv~-v~gnld~~~~~~~g~~af~t~yNsE~~~~l~e---------m~~~e~D~~~vf 278 (638)
T 3sbq_A 219 YNAIDA--------ETMEM--AFQVI-VDGNLDNTDADYTGRFAAATCYNSEKAFDLGG---------MMRNERDWVVVF 278 (638)
T ss_dssp EEEEET--------TTCSE--EEEEE-ESSCCCCEEECSSSSEEEEEESCTTCCSSHHH---------HTCSSCEEEEEE
T ss_pred EEEEcC--------CccEE--EEEEE-cCCChhhcCCCCCCCEEEEeeeccccCcChhh---------cCcccccEEEEe
Confidence 100000 00001 11111 11222233334444444443333222211111 111112222222
Q ss_pred EecC--------CeeEeeeCCC-eEEEEeCCC----Cce-EEeee-CCceEEEEEecCCcEEEeecC-CCeEEEEecccc
Q psy18231 385 HVSD--------HEILTASLDC-RIRRYDIRT----GNL-VTDYV-GEPIVDACFTRDCQCILTCST-DECLRLFDKATG 448 (540)
Q Consensus 385 ~~~~--------~~l~~~~~dg-~i~iwd~~~----~~~-~~~~~-~~~i~~~~~sp~~~~l~~~~~-dg~i~i~d~~~~ 448 (540)
.|-. +... .+| .+.+.|.+. +.. ...+. ......+.++|||+++++++. +.++.++|++..
T Consensus 279 n~~~ie~~vk~G~~~~---~~g~gv~ViD~~~~~~~~~~~~~~iP~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~ 355 (638)
T 3sbq_A 279 DIHAVEAAVKAGDFIT---LGDSKTPVLDGRKKDGKDSKFTRYVPVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKL 355 (638)
T ss_dssp EHHHHHHHHHTTCCBC---CTTCCCCEEECSCBTTBCCSSEEEEEESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGH
T ss_pred cHHHHHHHHhcCCeEE---ECCCCeeEEccccccccCCceEEEEeCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehh
Confidence 2211 1111 121 477888876 322 22222 356778899999999887665 889999998753
Q ss_pred chh---------hhhccC-cCCcceEEEEecCCCCeEEEeeCCCcEEEEEecCC----------cceeEEEecccceeee
Q psy18231 449 ELL---------EEYKGH-KSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDS----------SQISTLIHSVGKAVVN 508 (540)
Q Consensus 449 ~~~---------~~~~~~-~~~v~~~~~~~s~~~~~l~s~s~dg~i~iwd~~~~----------~~~~~~~~~~~~~~v~ 508 (540)
... ..+.+. .-...-+..+|.++|.-..+---|..|.-|++... ..+..+. .|-.+-.
T Consensus 356 ~~~~~~k~~~~~~~~~ae~e~GlGPlHt~Fd~~G~aYTtlfidSqvvkWni~~a~~~~~g~~~~~v~~k~d--v~YqpGH 433 (638)
T 3sbq_A 356 PDLFAGKLADPRDVIVGEPELGLGPLHTTFDGRGNAYTTLFIDSQVVKWNMEEAVRAYKGEKVNYIKQKLD--VHYQPGH 433 (638)
T ss_dssp HHHHTTCCSCGGGGEEECCBCCSCEEEEEECSSSEEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEE--CSSCEEE
T ss_pred hhhhhccccCcccceEeeccCCCcccEEEECCCCceEeeeeecceEEEEeccHHHHHhcCccCCeeeeccc--cccCCcc
Confidence 221 111100 11122344589999955566678999999998753 3444554 3332221
Q ss_pred EE-----EEcCCCcEEEeec
Q psy18231 509 SL-----CSHPTRKHIMSAC 523 (540)
Q Consensus 509 ~l-----~~s~d~~~l~s~~ 523 (540)
-. .-.|||++|++..
T Consensus 434 ~~~~~get~~~dGk~lv~ln 453 (638)
T 3sbq_A 434 LHASLCETNEADGKWLVALS 453 (638)
T ss_dssp EEETTTTSTTCCSCEEEEEE
T ss_pred cccCCCccCCCCccEEEEec
Confidence 11 1257888888764
|
| >3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ... | Back alignment and structure |
|---|
Probab=96.27 E-value=1.7 Score=47.17 Aligned_cols=107 Identities=15% Similarity=0.187 Sum_probs=68.8
Q ss_pred eCCCCCEEEEeeC---------CCcEEEEcCCCCeeEEEeecC-CcceeEEEEeeCCCeEEEeeCCCeEEEEEcCCCcee
Q psy18231 172 FPVDGSYCLTCGS---------DKKIKLWNPYRNLLLKTYGGH-AHEVNDATAACDSSQIASGASDKSVILWEVTTGQPV 241 (540)
Q Consensus 172 ~spdg~~lat~~~---------dg~i~iwd~~~~~~~~~~~~h-~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~ 241 (540)
|..+...|+++.. ...|++.+......+..+... ...|...+.+ +.+++.++ ++.+.++++..++..
T Consensus 469 f~~~~~TL~~~~l~~~~ivQVt~~~Irli~~~~~~~~~~w~~p~~~~I~~As~n--~~~vvva~-g~~l~~fel~~~~L~ 545 (1158)
T 3ei3_A 469 FVDDQQTFFCGNVAHQQLIQITSASVRLVSQEPKALVSEWKEPQAKNISVASCN--SSQVVVAV-GRALYYLQIHPQELR 545 (1158)
T ss_dssp CCSSSCEEEEEEETTTEEEEEESSCEEEEESSSCCEEEEECCTTCCCCCEEEEC--SSEEEEEE-TTEEEEEEEETTEEE
T ss_pred ccCCCCcEEEEEcCCCeEEEEecCEEEEEECCCCeEEEEEECCCCCEEEEEEeC--CCEEEEEE-CCEEEEEEeeCCcee
Confidence 4456667776643 234566665555556666533 3357666654 45666665 678888888765432
Q ss_pred Eec-cccCCceeEEEECCC------CCEEEEecC-CCcEEEEEecCCC
Q psy18231 242 RRW-REHASKVTCVKFNED------SSVVISGSQ-DNTVMMWDVKSRS 281 (540)
Q Consensus 242 ~~~-~~h~~~v~~~~~~~~------~~~l~s~~~-dg~i~iwd~~~~~ 281 (540)
... ..-...|.|+++.|. +++++.|.. |++++|+++.+.+
T Consensus 546 ~~~~~~l~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~ 593 (1158)
T 3ei3_A 546 QISHTEMEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFE 593 (1158)
T ss_dssp EEEEEECSSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCC
T ss_pred eecccCCCCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCC
Confidence 211 123568999999863 368999986 9999999997543
|
| >1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A* | Back alignment and structure |
|---|
Probab=96.26 E-value=0.069 Score=44.85 Aligned_cols=134 Identities=12% Similarity=-0.089 Sum_probs=78.0
Q ss_pred eeEeeeCCCeEEEEeCCCCce------EEeeeC---CceEEEEEecCCcEEEeecCCCeEEEEeccccchhhhhccCcCC
Q psy18231 390 EILTASLDCRIRRYDIRTGNL------VTDYVG---EPIVDACFTRDCQCILTCSTDECLRLFDKATGELLEEYKGHKSG 460 (540)
Q Consensus 390 ~l~~~~~dg~i~iwd~~~~~~------~~~~~~---~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~ 460 (540)
+|++...| +++.=....+.. ...+-. ..+..++|+|+|.+.++ .+|.++-.+..+.+...-+.. ...
T Consensus 6 ~l~~v~~d-~~y~G~~P~~~~~~~~~~a~~iG~~gw~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s-~t~ 81 (236)
T 1tl2_A 6 MLRGVYQD-KFYQGTYPQNKNDNWLARATLIGKGGWSNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGR-AKK 81 (236)
T ss_dssp CEEEEETT-EEEEESCCCSTTCCHHHHSEEEESSSCTTCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHH-CEE
T ss_pred EEEEEeCC-cEEecCCCCCcccchhhhccccCccccccceeEEECCCccEEEE--eCCeEEEECCCCCCccccccc-ccE
Confidence 45555666 655544444431 122222 47889999999997777 778877777655332111111 111
Q ss_pred c------ceEEEEecCCCCeEEEeeCCCcEEEEEecCCcce-----eEEEecccceeeeEEEEcCCCcEEEeecCCeeEE
Q psy18231 461 D------FRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQI-----STLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKL 529 (540)
Q Consensus 461 v------~~~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~-----~~~~~~~~~~~v~~l~~s~d~~~l~s~~d~~i~i 529 (540)
| .-..+.|.++|.+.++ .||.|+-++-.+...- .+......-..+..|.|.|+|.+.+.. |+.++-
T Consensus 82 IG~~Gw~~F~a~~fD~~G~LYav--~dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~-dg~lyr 158 (236)
T 1tl2_A 82 IGNGGWNQFQFLFFDPNGYLYAV--SKDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH-GQQFYK 158 (236)
T ss_dssp EECSCGGGCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE-TTEEEE
T ss_pred ecccccccceEEEECCCCCEEEe--CCCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe-CCcEEe
Confidence 1 0123378999987777 5698887775332111 111100122467999999999988888 787543
Q ss_pred E
Q psy18231 530 W 530 (540)
Q Consensus 530 w 530 (540)
+
T Consensus 159 ~ 159 (236)
T 1tl2_A 159 A 159 (236)
T ss_dssp E
T ss_pred c
Confidence 3
|
| >2gjl_A Hypothetical protein PA1024; 2-nitropropane dioxygenase, 2-nitropropane, FMN, oxidoreduct; HET: FMN; 2.00A {Pseudomonas aeruginosa PAO1} PDB: 2gjn_A* | Back alignment and structure |
|---|
Probab=96.15 E-value=0.005 Score=56.58 Aligned_cols=93 Identities=9% Similarity=0.059 Sum_probs=61.0
Q ss_pred eecceecCCceEEeccCCCCCHHHHHHHHHcCC-CEEEeeeee-cccccccchhhccccccCCCCCCEEEEEecC----C
Q psy18231 8 FNRSTLLKNLKHCDSTLWTSKLNFRQLVRSHNV-DLCFTPMII-ADSFIKSSKARNNEFSTSPEDTPLVVQFASN----N 81 (540)
Q Consensus 8 ~~~~~~~~~~~~~ap~~~~~~~~~r~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~----~ 81 (540)
+.+-+.++.+++.|||+|+++..++..+.+.|+ ++..+++.. .+.+.+.-+..... .+.|+.++++.+ +
T Consensus 8 ~~~~l~~~~Pii~apM~gvs~~~la~av~~aGglG~i~~~~~~s~~~l~~~i~~i~~~-----~~~p~~v~l~v~~~~~~ 82 (328)
T 2gjl_A 8 FTETFGVEHPIMQGGMQWVGRAEMAAAVANAGGLATLSALTQPSPEALAAEIARCREL-----TDRPFGVNLTLLPTQKP 82 (328)
T ss_dssp HHHHHTCSSSEEECCCTTTCSHHHHHHHHHTTSBCEEETTTSSSHHHHHHHHHHHHHH-----CSSCCEEEEEECCCSSC
T ss_pred HHHHhCCCCCEEECCCCCCCcHHHHHHHHHCCCeEEeCCCCCCCHHHHHHHHHHHHHh-----cCCCeEEEEeccccccC
Confidence 444455788999999999999999999999975 777776644 33322211111111 146888999887 3
Q ss_pred hhHHHHHHH-HhcCCCCeEeeccCCC
Q psy18231 82 HDDFVRATQ-YVAPHCNGVDLNCGCP 106 (540)
Q Consensus 82 ~~~~~~~~~-~~~~~~~~id~~~gc~ 106 (540)
++ +.+.++ ..+.+.+.|.++.|+|
T Consensus 83 ~~-~~~~~~~~~~~g~d~V~~~~g~p 107 (328)
T 2gjl_A 83 VP-YAEYRAAIIEAGIRVVETAGNDP 107 (328)
T ss_dssp CC-HHHHHHHHHHTTCCEEEEEESCC
T ss_pred cc-HHHHHHHHHhcCCCEEEEcCCCc
Confidence 43 223333 2345788999988876
|
| >1p4c_A L(+)-mandelate dehydrogenase; TIM barrel, hydroxy acid oxidizing enzyme, oxidoreductase; HET: FMN MES; 1.35A {Pseudomonas putida} SCOP: c.1.4.1 PDB: 1huv_A* 1p5b_A* 3giy_A* 2a7p_A* 2a85_A* 2a7n_A* | Back alignment and structure |
|---|
Probab=96.00 E-value=0.0066 Score=56.74 Aligned_cols=61 Identities=10% Similarity=-0.028 Sum_probs=44.3
Q ss_pred ceecCCceEEeccCC--C----CCHHHHHHHHHcCCCEEEeeeeecccccccchhhccccccCCCCCCEEEEEecCC
Q psy18231 11 STLLKNLKHCDSTLW--T----SKLNFRQLVRSHNVDLCFTPMIIADSFIKSSKARNNEFSTSPEDTPLVVQFASNN 81 (540)
Q Consensus 11 ~~~~~~~~~~ap~~~--~----~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~ 81 (540)
+..+++++++|||++ + +++++++.|+++|+.++++++ ++..+.+- .. . .+.|..+|++...
T Consensus 68 G~~l~~Pv~iap~~~~~~~~~~~~~~~a~aa~~~G~~~~vss~-s~~~le~i-----~~---~-~~~~~~fQly~~~ 134 (380)
T 1p4c_A 68 GKRQSMPLLIGPTGLNGALWPKGDLALARAATKAGIPFVLSTA-SNMSIEDL-----AR---Q-CDGDLWFQLYVIH 134 (380)
T ss_dssp TEEESSSEEECCCSCGGGTSTTHHHHHHHHHHHHTCCEEECTT-CSSCHHHH-----HH---H-CCSCEEEEECCSS
T ss_pred CeecCCceEecCccccccCCCcHHHHHHHHHHHcCCCeecCcc-ccCCHHHH-----Hh---c-cCCCeEEEEEech
Confidence 456788999999966 6 999999999999999999863 33222211 00 1 3678999998444
|
| >3zwt_A Dihydroorotate dehydrogenase (quinone), mitochond; oxidoreductase; HET: FMN ORO KFZ; 1.55A {Homo sapiens} PDB: 1d3h_A* 2bxv_A* 2prh_A* 2prl_A* 2prm_A* 3f1q_A* 3fj6_A* 3fjl_A* 3g0u_A* 3g0x_A* 3zws_A* 1d3g_A* 3u2o_A* 2fpv_A* 2fpt_A* 2fpy_A* 2fqi_A* 3kvl_A* 3kvk_A* 3kvj_A* ... | Back alignment and structure |
|---|
Probab=95.92 E-value=0.02 Score=52.95 Aligned_cols=95 Identities=13% Similarity=0.182 Sum_probs=65.0
Q ss_pred ceecCCceEEeccCCCCC--HHHHHHHHHcCCCEEEeeeeecccccccchhhc------------------------ccc
Q psy18231 11 STLLKNLKHCDSTLWTSK--LNFRQLVRSHNVDLCFTPMIIADSFIKSSKARN------------------------NEF 64 (540)
Q Consensus 11 ~~~~~~~~~~ap~~~~~~--~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------~~~ 64 (540)
++.+++++.+| +|+.. ..++.+.+ .|++.+.+--++...-.-+.+-+. ..+
T Consensus 56 Gl~~~NPvglA--aG~~~~~~~~~~~~~-~g~G~v~~ktvt~~pq~GNp~PR~~~~~~~~~~iN~~G~~N~G~~~~~~~l 132 (367)
T 3zwt_A 56 GHKFRNPVGIA--AGFDKHGEAVDGLYK-MGFGFVEIGSVTPKPQEGNPRPRVFRLPEDQAVINRYGFNSHGLSVVEHRL 132 (367)
T ss_dssp TEEESSSEEEC--TTSSTTSSSHHHHHH-TTCSEEEEEEECSSCBCCSCSCCEEEEGGGTEEEECCCCCBCCHHHHHHHH
T ss_pred CEEcCCCCEeC--CCcCCCHHHHHHHHh-cCcCeEEeCCccCCCCCCCCCCeEEEecCccceeeccCCCCccHHHHHHHH
Confidence 56789999999 56443 34666654 588888887777653221111110 011
Q ss_pred ccC--------CCCCCEEEEEecC-----ChhHHHHHHHHhcCCCCeEeeccCCCce
Q psy18231 65 STS--------PEDTPLVVQFASN-----NHDDFVRATQYVAPHCNGVDLNCGCPQR 108 (540)
Q Consensus 65 ~~~--------~~~~~~~~q~~~~-----~~~~~~~~~~~~~~~~~~id~~~gc~~~ 108 (540)
... ....|+++|+.++ ++++++++++.+.+++|.|++|++||..
T Consensus 133 ~~~~~~~~~~~~~~~pv~vniggn~~t~~~~~dy~~~~~~~~~~ad~ielNisCPn~ 189 (367)
T 3zwt_A 133 RARQQKQAKLTEDGLPLGVNLGKNKTSVDAAEDYAEGVRVLGPLADYLVVNVSSPNT 189 (367)
T ss_dssp HTTHHHHHHHHHTTCCEEEEECCCTTCSCHHHHHHHHHHHHGGGCSEEEEECCCTTS
T ss_pred HHHhhhccccccCCceEEEEEecCCCCCcCHHHHHHHHHHHhhhCCEEEEECCCCCC
Confidence 100 1256999999997 6899999999998889999999999976
|
| >2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=95.90 E-value=1.1 Score=41.50 Aligned_cols=104 Identities=14% Similarity=0.063 Sum_probs=59.5
Q ss_pred ecCeEEEEeCCCCCEEEEeeCCCcEEEEcCCCCeeEEEe-------ecCCcceeEEEEeeC---CCeEEEe-eC------
Q psy18231 164 LSGLMHTRFPVDGSYCLTCGSDKKIKLWNPYRNLLLKTY-------GGHAHEVNDATAACD---SSQIASG-AS------ 226 (540)
Q Consensus 164 ~~~v~~v~~spdg~~lat~~~dg~i~iwd~~~~~~~~~~-------~~h~~~v~~l~~sp~---~~~l~s~-s~------ 226 (540)
......|+|.|||++|+++...|.|++++.. +.....+ .........++++|+ +..|..+ +.
T Consensus 17 l~~P~~i~~~pdG~~l~V~e~~G~i~~~~~~-g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~ 95 (353)
T 2g8s_A 17 LDHPWALAFLPDNHGMLITLRGGELRHWQAG-KGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGK 95 (353)
T ss_dssp ESSEEEEEECSTTCCEEEEETTTEEEEEETT-TEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSC
T ss_pred CCCcEEEEEcCCCCEEEEEeCCceEEEEeCC-CceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCC
Confidence 4567899999999834455668999999853 3321111 112345689999995 4444433 32
Q ss_pred -CCeEEEEEcCCCc----eeE----ecc---ccCCceeEEEECCCCCEEEEecC
Q psy18231 227 -DKSVILWEVTTGQ----PVR----RWR---EHASKVTCVKFNEDSSVVISGSQ 268 (540)
Q Consensus 227 -dg~i~iwd~~~~~----~~~----~~~---~h~~~v~~~~~~~~~~~l~s~~~ 268 (540)
...|..|++..+. ... .+. ........+.|.|||.+.++.+.
T Consensus 96 ~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd 149 (353)
T 2g8s_A 96 AGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGE 149 (353)
T ss_dssp EEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECC
T ss_pred ceeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECC
Confidence 2356666664331 111 111 11122467999999976665543
|
| >3gr7_A NADPH dehydrogenase; flavin, FMN, beta-alpha-barrel, oxidoreductase, flavoprotein; HET: FMN; 2.30A {Geobacillus kaustophilus} PDB: 3gr8_A* | Back alignment and structure |
|---|
Probab=95.88 E-value=0.016 Score=53.27 Aligned_cols=112 Identities=13% Similarity=0.059 Sum_probs=65.2
Q ss_pred cceecCCceEEeccCCCCCH-----H----HHHHHHH--cCCCEEEeeeeecccccccchhhccccc-------------
Q psy18231 10 RSTLLKNLKHCDSTLWTSKL-----N----FRQLVRS--HNVDLCFTPMIIADSFIKSSKARNNEFS------------- 65 (540)
Q Consensus 10 ~~~~~~~~~~~ap~~~~~~~-----~----~r~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------- 65 (540)
+++.++||+++|||.+...- | .....++ -|+++..||...-..--+..+.......
T Consensus 12 g~~~l~NRiv~apm~~~~~~~~~g~~~~~~~~~y~~rA~gG~Glii~e~~~v~~~g~~~~~~~~i~~d~~i~~~~~~~~~ 91 (340)
T 3gr7_A 12 RGLTLKNRIVMSPMCMYSCDTKDGAVRTWHKIHYPARAVGQVGLIIVEATGVTPQGRISERDLGIWSDDHIAGLRELVGL 91 (340)
T ss_dssp TTEEESSSEEECCCCCCCCTTSSSCCCHHHHHHHHHHHHTTCSEEEEEEEESSGGGCSSTTSEECSSTTHHHHHHHHHHH
T ss_pred CCEEEcCceEECCcCCCcccCCCCCCCHHHHHHHHHHhcCCceEEEEcceEecccccCCCCCcccCCHHHHHHHHHHHHH
Confidence 57889999999999875322 2 2222222 3789999998654332221111111100
Q ss_pred cCCCCCCEEEEEecCC-----------------------------------hhHHHHHHHHhcC-CCCeEeeccCC----
Q psy18231 66 TSPEDTPLVVQFASNN-----------------------------------HDDFVRATQYVAP-HCNGVDLNCGC---- 105 (540)
Q Consensus 66 ~~~~~~~~~~q~~~~~-----------------------------------~~~~~~~~~~~~~-~~~~id~~~gc---- 105 (540)
.+.....+++|+.-.. .+++++||+...+ +.|+|++|.+|
T Consensus 92 vh~~G~~i~~QL~H~Gr~~~~~~~~~~pS~~~~~~~~~~p~~mt~~eI~~ii~~f~~aA~~a~~aGfDgVEih~a~GyLl 171 (340)
T 3gr7_A 92 VKEHGAAIGIQLAHAGRKSQVPGEIIAPSAVPFDDSSPTPKEMTKADIEETVQAFQNGARRAKEAGFDVIEIHAAHGYLI 171 (340)
T ss_dssp HHHTTCEEEEEEECCGGGCCSSSCCEESSSCCSSTTSCCCEECCHHHHHHHHHHHHHHHHHHHHHTCSEEEEEECTTCHH
T ss_pred HHhCCCeEEEEeccCCCccCCCCCccCCCCccccCCCCCCccCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEccccchHH
Confidence 1345677888884211 1356777776554 99999999996
Q ss_pred -----CceEEEeccccceecc
Q psy18231 106 -----PQRWAIKEGYGCALLS 121 (540)
Q Consensus 106 -----~~~~~~~~g~g~~l~~ 121 (540)
|......+.+|..+..
T Consensus 172 ~qFlsp~~N~R~D~yGGslen 192 (340)
T 3gr7_A 172 NEFLSPLSNRRQDEYGGSPEN 192 (340)
T ss_dssp HHHHCTTTCCCCSTTSSSHHH
T ss_pred HHcCCCccCcCCCcccCCHHH
Confidence 6543344455555543
|
| >3bw2_A 2-nitropropane dioxygenase; TIM barrel, oxidoreductase; HET: FMN; 2.10A {Streptomyces ansochromogenes} PDB: 3bw4_A* 3bw3_A* | Back alignment and structure |
|---|
Probab=95.56 E-value=0.023 Score=53.07 Aligned_cols=63 Identities=11% Similarity=-0.089 Sum_probs=47.7
Q ss_pred CCceEEeccCC-CCCHHHHHHHHHcCC-CEEEeeeeecccccccchhhccccccCCCCCCEEEEEecCCh
Q psy18231 15 KNLKHCDSTLW-TSKLNFRQLVRSHNV-DLCFTPMIIADSFIKSSKARNNEFSTSPEDTPLVVQFASNNH 82 (540)
Q Consensus 15 ~~~~~~ap~~~-~~~~~~r~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~ 82 (540)
+.+++.|||++ +|+..++..+.+.|+ ++..+.|++..++.+.-+.....+ +.|+.++++...+
T Consensus 10 ~~Pii~apMaggvs~~~la~av~~aGglG~i~~~~~s~~~l~~~i~~~~~~~-----~~p~gVnl~~~~~ 74 (369)
T 3bw2_A 10 PLPIVQAPMAGGVSVPQLAAAVCEAGGLGFLAAGYKTADGMYQEIKRLRGLT-----GRPFGVNVFMPQP 74 (369)
T ss_dssp SSSEEECCCTTTTSCHHHHHHHHHTTSBEEEECTTSCHHHHHHHHHHHHHHC-----CSCEEEEEECCCC
T ss_pred cCCEEeCCCCCCCCcHHHHHHHHHCCCEEEcCCCCCCHHHHHHHHHHHHHhC-----CCCeEEEEecCCC
Confidence 77899999995 999999999999986 888888888776654433333222 2588888887654
|
| >3kru_A NADH:flavin oxidoreductase/NADH oxidase; homotetramer, dimer of dimers, TIM barrel, thermophilic, OLD enzyme; HET: FMN; 1.60A {Thermoanaerobacter pseudethanolicus AT} SCOP: c.1.4.0 PDB: 3krz_A* | Back alignment and structure |
|---|
Probab=95.42 E-value=0.022 Score=52.24 Aligned_cols=113 Identities=13% Similarity=0.127 Sum_probs=67.3
Q ss_pred cceecCCceEEeccCCCCC----HH----HHHHHHH--cCCCEEEeeeeecccccccchhhccccc-------------c
Q psy18231 10 RSTLLKNLKHCDSTLWTSK----LN----FRQLVRS--HNVDLCFTPMIIADSFIKSSKARNNEFS-------------T 66 (540)
Q Consensus 10 ~~~~~~~~~~~ap~~~~~~----~~----~r~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~ 66 (540)
+.+.|+||+++|||.+... .| .....++ -|+++..||-..-..--+..+....... .
T Consensus 11 g~~~l~NRiv~apm~~~~~~~~g~~t~~~~~yy~~rA~gG~Gliite~~~V~~~g~~~~~~~gi~~d~~i~~~~~~~~~v 90 (343)
T 3kru_A 11 KDITIKNRIMMSPMCMYSASTDGMPNDWHIVHYATRAIGGVGLIMQEATAVESRGRITDHDLGIWNDEQVKELKKIVDIC 90 (343)
T ss_dssp TTEEESSSEEECCCCCCCSCTTCCCCHHHHHHHHHHHHTTCSEEEEEEEESSGGGCSSTTSCBCSSHHHHHHHHHHHHHH
T ss_pred eeeeeeeeecccchhheecccCCCCCceeeeeeehhhccceeeeeehhhhhhhcCccccccccccCHHHHHHHHHHHHHH
Confidence 4688999999999987432 22 2222222 3789999998654332221111111000 1
Q ss_pred CCCCCCEEEEEecCC------------------------------------hhHHHHHHHHhcC-CCCeEeec-------
Q psy18231 67 SPEDTPLVVQFASNN------------------------------------HDDFVRATQYVAP-HCNGVDLN------- 102 (540)
Q Consensus 67 ~~~~~~~~~q~~~~~------------------------------------~~~~~~~~~~~~~-~~~~id~~------- 102 (540)
+.....+++|+.-.. .+++++||+...+ +.|+|++|
T Consensus 91 h~~G~~i~~QL~H~Gr~~~~~g~~~~apS~i~~~~~~~~p~~mt~~eI~~ii~~f~~AA~~a~~aGfDgVEih~ahGYLl 170 (343)
T 3kru_A 91 KANGAVMGIQLAHAGRKCNISYEDVVGPSPIKAGDRYKLPRELSVEEIKSIVKAFGEAAKRANLAGYDVVEIHAAHGYLI 170 (343)
T ss_dssp HHTTCEEEEEEECCGGGCCCTTSCCEESSSCCSSTTSCCCEECCHHHHHHHHHHHHHHHHHHHHHTCSEEEEEECTTSHH
T ss_pred hcCCceEeeehhhccCccCcchhhccCCCcCCCCccccCchhcCHHHHHHHHHHHHHHHhhccccCCceEEEecccchhH
Confidence 355667888874211 1356677776544 99999999
Q ss_pred --cCCCceEEEeccccceeccc
Q psy18231 103 --CGCPQRWAIKEGYGCALLSK 122 (540)
Q Consensus 103 --~gc~~~~~~~~g~g~~l~~~ 122 (540)
+.||......+.+|..+..+
T Consensus 171 ~qFlsp~~N~R~D~yGGslenR 192 (343)
T 3kru_A 171 HEFLSPLSNKRKDEYGNSIENR 192 (343)
T ss_dssp HHHHCTTTCCCCSTTSSSHHHH
T ss_pred HHhhcccccccchhhccchHhH
Confidence 66888666666677666544
|
| >2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=95.40 E-value=0.27 Score=45.52 Aligned_cols=136 Identities=14% Similarity=0.125 Sum_probs=77.6
Q ss_pred ccEEEEEecC-CeeEeeeCCCeEEEEeCCCCce--EEeee-----CCceEEEEEecC---CcEEEeecC-C-----CeEE
Q psy18231 379 DSITSVHVSD-HEILTASLDCRIRRYDIRTGNL--VTDYV-----GEPIVDACFTRD---CQCILTCST-D-----ECLR 441 (540)
Q Consensus 379 ~~v~~l~~~~-~~l~~~~~dg~i~iwd~~~~~~--~~~~~-----~~~i~~~~~sp~---~~~l~~~~~-d-----g~i~ 441 (540)
.....+++.| ..++++..+|.|++++ .++. +..+. ......++++|+ +..|+++.. + +.|.
T Consensus 31 ~~P~~ia~~pdG~l~V~e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~ 108 (352)
T 2ism_A 31 EVPWALAFLPDGGMLIAERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVV 108 (352)
T ss_dssp SCEEEEEECTTSCEEEEETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEEE
T ss_pred CCceEEEEcCCCeEEEEeCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEEE
Confidence 3457899988 5677777889999998 3432 22221 246889999998 444444433 2 6788
Q ss_pred EEecccc-----chh-hhhc-----cCcCCcceEEEEecCCCCeEEEeeC-------------CCcEEEEEecCC-----
Q psy18231 442 LFDKATG-----ELL-EEYK-----GHKSGDFRIECCLDSKDSQIFCGSS-------------DGKIYKWQLVDS----- 492 (540)
Q Consensus 442 i~d~~~~-----~~~-~~~~-----~~~~~v~~~~~~~s~~~~~l~s~s~-------------dg~i~iwd~~~~----- 492 (540)
.|+...+ +.+ ..+. .|. ...+ +|.|||.+.++.+. .|.|.-++....
T Consensus 109 r~~~~~~~~~~~~~l~~~~p~~~~~~h~--~~~l--~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~n 184 (352)
T 2ism_A 109 RLRHLGERGVLDRVVLDGIPARPHGLHS--GGRI--AFGPDGMLYVTTGEVYERELAQDLASLGGKILRLTPEGEPAPGN 184 (352)
T ss_dssp EEEECSSCEEEEEEEEEEECCCTTCCCC--CCCE--EECTTSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBCTTC
T ss_pred EEEeCCCCcCceEEEEEeCCCCCCCCcC--CceE--EECCCCCEEEEECCCCCCccccCCCCCceEEEEEcCCCCCCCCC
Confidence 8877643 111 1122 122 2344 89999976665432 145555554320
Q ss_pred -------cceeEEEecccceeeeEEEEcC-CCcEEEee
Q psy18231 493 -------SQISTLIHSVGKAVVNSLCSHP-TRKHIMSA 522 (540)
Q Consensus 493 -------~~~~~~~~~~~~~~v~~l~~s~-d~~~l~s~ 522 (540)
.....+.. ++ .....++|+| ++.+.++-
T Consensus 185 pf~~~~~~~~~i~a~-G~-rnp~g~a~d~~~g~l~v~d 220 (352)
T 2ism_A 185 PFLGRRGARPEVYSL-GH-RNPQGLAWHPKTGELFSSE 220 (352)
T ss_dssp TTTTCTTSCTTEEEE-CC-SEECCCEECTTTCCEEEEE
T ss_pred cccCCCCCCccEEEE-cC-CCcccEEEECCCCCEEEEE
Confidence 11222221 34 3467899999 56655543
|
| >2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* | Back alignment and structure |
|---|
Probab=95.31 E-value=0.81 Score=46.85 Aligned_cols=108 Identities=8% Similarity=0.044 Sum_probs=59.2
Q ss_pred cCCeeEeeeCCC--eEEEEeCCCCceEEeee------C-CceEEEEEecC-CcEEEeecC--C-----CeEEEEeccccc
Q psy18231 387 SDHEILTASLDC--RIRRYDIRTGNLVTDYV------G-EPIVDACFTRD-CQCILTCST--D-----ECLRLFDKATGE 449 (540)
Q Consensus 387 ~~~~l~~~~~dg--~i~iwd~~~~~~~~~~~------~-~~i~~~~~sp~-~~~l~~~~~--d-----g~i~i~d~~~~~ 449 (540)
...+++.|+.++ .+.+||..+.+-...-. . ....++.+..+ +++++.|+. + +.+.+||+.+.+
T Consensus 500 ~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~ 579 (695)
T 2zwa_A 500 DGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAEN 579 (695)
T ss_dssp TSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTC
T ss_pred CCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCc
Confidence 346677776544 68999998765332211 1 12233555555 777777765 2 458899987765
Q ss_pred h-----hhhhccC-cCCcceEEEEecCCCCeEEEeeC--------CCcEEEEEecCCcc
Q psy18231 450 L-----LEEYKGH-KSGDFRIECCLDSKDSQIFCGSS--------DGKIYKWQLVDSSQ 494 (540)
Q Consensus 450 ~-----~~~~~~~-~~~v~~~~~~~s~~~~~l~s~s~--------dg~i~iwd~~~~~~ 494 (540)
- ...+... ..+.....++...++++++.|+. ...|.+||+.+.+-
T Consensus 580 w~~~~~W~~~~~~p~~~R~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~t~~W 638 (695)
T 2zwa_A 580 ATEPITVIKKLQHPLFQRYGSQIKYITPRKLLIVGGTSPSGLFDRTNSIISLDPLSETL 638 (695)
T ss_dssp SSCCEEEEEEEECGGGCCBSCEEEEEETTEEEEECCBCSSCCCCTTTSEEEEETTTTEE
T ss_pred cccceEEEEcCCCCCCCcccceEEEeCCCEEEEECCccCCCCCCCCCeEEEEECCCCeE
Confidence 1 1111110 01111111123333677777774 34689999877654
|
| >3l5a_A NADH/flavin oxidoreductase/NADH oxidase; OLD yellow enzyme family, OYE-like FMN-binding domain, TIM B oxidoreductase; HET: PGE; 1.65A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=95.25 E-value=0.048 Score=51.49 Aligned_cols=110 Identities=13% Similarity=0.097 Sum_probs=65.0
Q ss_pred cceecCCceEEeccCCCC--------CHHHHHHHHHc-CCCEEEeeeeecccccccchhhcccc--------c-----cC
Q psy18231 10 RSTLLKNLKHCDSTLWTS--------KLNFRQLVRSH-NVDLCFTPMIIADSFIKSSKARNNEF--------S-----TS 67 (540)
Q Consensus 10 ~~~~~~~~~~~ap~~~~~--------~~~~r~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~--------~-----~~ 67 (540)
+++.|+||+++|||.... +.-.+...++. |+++..||.+.-...-+..+...... . .+
T Consensus 35 g~~~lkNRiv~aPm~~~~a~~dg~~t~~~~~yy~~rA~G~GLiIte~~~V~~~g~~~~~~~gi~~d~~i~~~k~l~~avh 114 (419)
T 3l5a_A 35 NGIKISNRFVLSPMTVNASTKEGYITKADLAYAARRSNSAGMQVTGAAYIEPYGKLFEYGFNIDHDACIPGLTNMASTMK 114 (419)
T ss_dssp TSCEESSSEEECCCCCCCSCTTCCCCHHHHHHHHHTTTSCSEEEEEEEESSGGGCCSTTCEECSSGGGHHHHHHHHHHHH
T ss_pred CCCEECCCeEeCCCCCCccCCCCCCCHHHHHHHHHHhcCCcEEEecceEeCcccccCCCccccccHHHHHHHHHHHHHHH
Confidence 467899999999998643 22233222222 78999999765443222211111000 0 13
Q ss_pred CCCCCEEEEEecCC----------------------------------------hhHHHHHHHH-hcCCCCeEeeccCC-
Q psy18231 68 PEDTPLVVQFASNN----------------------------------------HDDFVRATQY-VAPHCNGVDLNCGC- 105 (540)
Q Consensus 68 ~~~~~~~~q~~~~~----------------------------------------~~~~~~~~~~-~~~~~~~id~~~gc- 105 (540)
.....+++|+.=.. .+++++||+. ...+.|+|+++++|
T Consensus 115 ~~G~~i~~QL~H~Gr~~~~~~~~~~~~vapS~i~~~~~~~~~pr~mt~~eI~~ii~~F~~AA~rA~~AGfDgVEIH~ahG 194 (419)
T 3l5a_A 115 QHGSLAIIQLAHAGRFSNQAILNFGKVYGPSPMTLHSPIEHVVIAMSHEKINSIIQQYRDATLRAIKAGFDGVEISIAQR 194 (419)
T ss_dssp TTSCEEEEEEECCGGGCHHHHHHHSEEEESSCEEECSSSSEEEEECCHHHHHHHHHHHHHHHHHHHHTTCSEEEEECCTT
T ss_pred hcCCEEEEEeccCCCcccccccCCCceeCCCCCccccCCCCCCccCCHHHHHHHHHHHHHHHHHHHHcCCCEEEECCccc
Confidence 55677888886211 0356667765 44599999999998
Q ss_pred --------CceEEEecccccee
Q psy18231 106 --------PQRWAIKEGYGCAL 119 (540)
Q Consensus 106 --------~~~~~~~~g~g~~l 119 (540)
|..-...+.+|..+
T Consensus 195 YLl~QFlSp~~N~RtD~yGGs~ 216 (419)
T 3l5a_A 195 LLIQTFFSTFSNRRTDHYGADS 216 (419)
T ss_dssp SHHHHHHCTTTCCCCSTTSTTC
T ss_pred hHHHHccCCcccccccCCCCch
Confidence 65444445556666
|
| >3sr7_A Isopentenyl-diphosphate delta-isomerase; isopentenyl pyrophosphate isomerase, TIM-barrel; 2.04A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=95.05 E-value=0.045 Score=50.38 Aligned_cols=89 Identities=10% Similarity=0.016 Sum_probs=47.4
Q ss_pred ceecCCceEEeccCCCCCHH------HHHHHHHcCCCEEEeeeeecccccccchhh-ccccccCCCCCCEEEEEecCC-h
Q psy18231 11 STLLKNLKHCDSTLWTSKLN------FRQLVRSHNVDLCFTPMIIADSFIKSSKAR-NNEFSTSPEDTPLVVQFASNN-H 82 (540)
Q Consensus 11 ~~~~~~~~~~ap~~~~~~~~------~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~q~~~~~-~ 82 (540)
+..++.|+++|||+|.+..+ |+++|+++|..+...+|..+ ++..+.. ....... .+.+++.-+.... .
T Consensus 82 g~~l~~Pi~iapMtgg~~~~~~in~~lA~~a~~~G~~~~vGs~~~~---le~~~~~~~~v~r~~-P~~~~ianig~~~~~ 157 (365)
T 3sr7_A 82 GQDFDFPFYINAMTGGSQKGKEVNEKLAQVADTCGLLFVTGSYSTA---LKNPDDTSYQVKKSR-PHLLLATNIGLDKPY 157 (365)
T ss_dssp TEEESSSEEEECC----CCCHHHHHHHHHHHHHHTCCEEC---------------------------CCEEEEEETTSCH
T ss_pred CEEccCceEeccccCCCcchhHHHHHHHHHHHHcCCCeeccccccc---ccCccccceEehhhC-CCCcEEEEeCCCCCH
Confidence 45678899999999999987 99999999999999999543 3332221 1111112 3566777766544 3
Q ss_pred hHHHHHHHHhcCCCCeEeecc
Q psy18231 83 DDFVRATQYVAPHCNGVDLNC 103 (540)
Q Consensus 83 ~~~~~~~~~~~~~~~~id~~~ 103 (540)
++..++++.+..+.-.|.+|.
T Consensus 158 e~~~~~ve~~~adal~ihln~ 178 (365)
T 3sr7_A 158 QAGLQAVRDLQPLFLQVHINL 178 (365)
T ss_dssp HHHHHHHHHHCCSCEEEEECH
T ss_pred HHHHHHHHhcCCCEEEEeccc
Confidence 456666666655555666664
|
| >3hgj_A Chromate reductase; TIM barrel, oxidoreductase; HET: FMN; 2.00A {Thermus scotoductus} SCOP: c.1.4.0 PDB: 3hf3_A* | Back alignment and structure |
|---|
Probab=94.85 E-value=0.038 Score=51.04 Aligned_cols=42 Identities=14% Similarity=-0.011 Sum_probs=28.2
Q ss_pred cceecCCceEEeccCCCCC----HH----HHHHHHH--cCCCEEEeeeeecc
Q psy18231 10 RSTLLKNLKHCDSTLWTSK----LN----FRQLVRS--HNVDLCFTPMIIAD 51 (540)
Q Consensus 10 ~~~~~~~~~~~ap~~~~~~----~~----~r~~~~~--~~~~~~~~~~~~~~ 51 (540)
+++.++||+++|||.+... .| .....++ -|+++..||.+.-.
T Consensus 11 g~~~l~NRiv~apm~~~~~~~~g~~~~~~~~~y~~rA~gg~Glii~e~~~v~ 62 (349)
T 3hgj_A 11 GGLRLKNRLAMSPMCQYSATLEGEVTDWHLLHYPTRALGGVGLILVEATAVE 62 (349)
T ss_dssp TTEEESSSEEECCCCCCCSCTTCCCCHHHHHHHHHHHHTTCSEEEEEEEESS
T ss_pred CCEEecCceEECCcCcCCcCCCCCCCHHHHHHHHHHhcCCceEEEecceeec
Confidence 5788999999999997522 22 2222222 37899999976543
|
| >1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A* | Back alignment and structure |
|---|
Probab=94.84 E-value=0.063 Score=45.10 Aligned_cols=102 Identities=12% Similarity=-0.024 Sum_probs=64.6
Q ss_pred cCeEEEEeCCCCCEEEEeeCCCcEEEEcCCCCee------EEEee--cCCcceeEEEEeeCCCeEEEeeCCCeEEEEEcC
Q psy18231 165 SGLMHTRFPVDGSYCLTCGSDKKIKLWNPYRNLL------LKTYG--GHAHEVNDATAACDSSQIASGASDKSVILWEVT 236 (540)
Q Consensus 165 ~~v~~v~~spdg~~lat~~~dg~i~iwd~~~~~~------~~~~~--~h~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~ 236 (540)
..+..++|+|+|.+-++ .+|.+.-.+..+... -..+- +-. ...++.|.|+|.+.++ .||.|.-++-.
T Consensus 41 ~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~-~F~a~~fD~~G~LYav--~dG~iyr~~pP 115 (236)
T 1tl2_A 41 SNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWN-QFQFLFFDPNGYLYAV--SKDKLYKASPP 115 (236)
T ss_dssp TTCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGG-GCSEEEECTTSCEEEE--ETTEEEEESCC
T ss_pred ccceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccccEecccccc-cceEEEECCCCCEEEe--CCCEEEEeCCC
Confidence 36779999999986666 578877777655211 11221 111 2578999999988777 56988777653
Q ss_pred CCceeEe-------ccccCCceeEEEECCCCCEEEEecCCCcEE
Q psy18231 237 TGQPVRR-------WREHASKVTCVKFNEDSSVVISGSQDNTVM 273 (540)
Q Consensus 237 ~~~~~~~-------~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~ 273 (540)
+.....- -+.-=..+..+.|.|+|.+.+.. |+.+.
T Consensus 116 ~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~ly 157 (236)
T 1tl2_A 116 QSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFY 157 (236)
T ss_dssp CSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEEE
T ss_pred cCCCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcEE
Confidence 3211111 01112467999999999876665 77643
|
| >3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A* | Back alignment and structure |
|---|
Probab=94.80 E-value=1.2 Score=41.22 Aligned_cols=137 Identities=11% Similarity=0.059 Sum_probs=78.0
Q ss_pred ccEEEEEecC-CeeEeeeCCCeEEEEeCCCCc-eEEeee----C-CceEEEEEecC---CcEEEeecC----C----CeE
Q psy18231 379 DSITSVHVSD-HEILTASLDCRIRRYDIRTGN-LVTDYV----G-EPIVDACFTRD---CQCILTCST----D----ECL 440 (540)
Q Consensus 379 ~~v~~l~~~~-~~l~~~~~dg~i~iwd~~~~~-~~~~~~----~-~~i~~~~~sp~---~~~l~~~~~----d----g~i 440 (540)
.....+++.| ..++++..+|.|+++|. +++ .+..+. + .....++++|+ +..|+++.. + ..|
T Consensus 29 ~~P~~ia~~pdG~l~V~e~~g~I~~~d~-~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~v 107 (354)
T 3a9g_A 29 EVPWSIAPLGGGRYLVTERPGRLVLISP-SGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNRV 107 (354)
T ss_dssp SCEEEEEEEETTEEEEEETTTEEEEECS-SCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEEE
T ss_pred CCCeEEEEcCCCeEEEEeCCCEEEEEeC-CCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceEE
Confidence 3457888888 66888888899999974 444 222211 1 46889999997 444444332 3 567
Q ss_pred EEEecccc-------chh-hhhc---cCcCCcceEEEEecCCCCeEEEeeC-------------CCcEEEEEecCCc---
Q psy18231 441 RLFDKATG-------ELL-EEYK---GHKSGDFRIECCLDSKDSQIFCGSS-------------DGKIYKWQLVDSS--- 493 (540)
Q Consensus 441 ~i~d~~~~-------~~~-~~~~---~~~~~v~~~~~~~s~~~~~l~s~s~-------------dg~i~iwd~~~~~--- 493 (540)
..|+.... +.+ ..+. .|. ...+ +|.|||.+.++-+. .|.|.-++.. ++
T Consensus 108 ~r~~~~~~~~~~~~~~~l~~~~~~~~~h~--~~~l--~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~d-G~~p~ 182 (354)
T 3a9g_A 108 IRGRLDGSTFKLKEVKTLIDGIPGAYIHN--GGRI--RFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEE-GRPPA 182 (354)
T ss_dssp EEEEECSSSCCEEEEEEEEEEEECCSSCC--CCCE--EECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTT-SCCCT
T ss_pred EEEEECCCCcCcCccEEEEEcCCCCCCcC--CceE--EECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCC-CCCCC
Confidence 77776543 111 1121 122 2334 89999987666432 2445555532 33
Q ss_pred -----ceeEEEecccceeeeEEEEcC-CCcEEEeec
Q psy18231 494 -----QISTLIHSVGKAVVNSLCSHP-TRKHIMSAC 523 (540)
Q Consensus 494 -----~~~~~~~~~~~~~v~~l~~s~-d~~~l~s~~ 523 (540)
....+.. ++. ....++|+| ++++.++-.
T Consensus 183 ~npf~~~~i~a~-G~r-np~Gla~d~~~g~l~v~d~ 216 (354)
T 3a9g_A 183 DNPFPNSPIWSY-GHR-NPQGIDWHRASGVMVATEH 216 (354)
T ss_dssp TSSSTTCCEEEE-CCS-CCCEEEECTTTCCEEEEEC
T ss_pred CCCCCCCcEEEE-ccC-CcceEEEeCCCCCEEEEec
Confidence 1122221 343 467899999 666555543
|
| >3i65_A Dihydroorotate dehydrogenase homolog, mitochondrial; triazolopyrimidine,inhibitor, DSM1, FAD, flavoprotein, membrane, mitochondrion; HET: JZ8 FMN ORO LDA; 2.00A {Plasmodium falciparum 3D7} PDB: 3i68_A* 3i6r_A* 3o8a_A* 3sfk_A* | Back alignment and structure |
|---|
Probab=94.76 E-value=0.11 Score=48.51 Aligned_cols=105 Identities=10% Similarity=0.025 Sum_probs=62.3
Q ss_pred ceecCCceEEeccCCCCCHHHHHHHHHcCCCEEEeeeeecccccccchhhcc------------------------cccc
Q psy18231 11 STLLKNLKHCDSTLWTSKLNFRQLVRSHNVDLCFTPMIIADSFIKSSKARNN------------------------EFST 66 (540)
Q Consensus 11 ~~~~~~~~~~ap~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------~~~~ 66 (540)
++.+++++.+|-=..=.-..++.+ .+.|++.+.+.-|+...-.-+.+-+.. .+..
T Consensus 90 Gl~f~NPvglAAG~dk~~~~~~~l-~~lGfG~vevgtvT~~pq~GNp~PRlfrl~e~~aiiN~~GfnN~G~d~~~~~l~~ 168 (415)
T 3i65_A 90 HLDFINPFGVAAGFDKNGVCIDSI-LKLGFSFIEIGTITPRGQTGNAKPRIFRDVESRSIINSCGFNNMGCDKVTENLIL 168 (415)
T ss_dssp TEEESSSEEECTTSSTTCSSHHHH-HTTTCSEEEEEEECSSCBCCSCSCCEEEEGGGTEEEECCCSCBCCHHHHHHHHHH
T ss_pred CEECCCCCEECCCCCCCHHHHHHH-HHcCCCeEEeCcccCCcCCCCCCCeEEeccCCCceeecCCCCchhHHHHHHHHHH
Confidence 567899999985222222234444 367888887777765532111111100 0000
Q ss_pred -C---C-----CCCCEEEEEecCC-----hhHHHHHHHHhcCCCCeEeeccCCCceEEEeccccceeccc
Q psy18231 67 -S---P-----EDTPLVVQFASNN-----HDDFVRATQYVAPHCNGVDLNCGCPQRWAIKEGYGCALLSK 122 (540)
Q Consensus 67 -~---~-----~~~~~~~q~~~~~-----~~~~~~~~~~~~~~~~~id~~~gc~~~~~~~~g~g~~l~~~ 122 (540)
. + ...|+++|+.++. +++++++++.+.+.+|.|++|++||... |..++.+
T Consensus 169 ~~~~~~~~~~~~~~~vgvnIg~nk~t~~~~~Dy~~~a~~l~~~ad~ieiNiScPNt~------Gl~~lq~ 232 (415)
T 3i65_A 169 FRKRQEEDKLLSKHIVGVSIGKNKDTVNIVDDLKYCINKIGRYADYIAINVSSPNTP------GLRDNQE 232 (415)
T ss_dssp HHHHHTTCGGGTTCEEEEEECCCTTCSCHHHHHHHHHHHHGGGCSEEEEECCCCC--------------C
T ss_pred HHhhccccccccCceEEEEeccccCccccHHHHHHHHHHHHhhCCEEEEECCCCCCC------CcccccC
Confidence 0 0 1356899999988 7899999999998899999999999763 4556665
|
| >1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A | Back alignment and structure |
|---|
Probab=94.65 E-value=2.6 Score=40.42 Aligned_cols=153 Identities=12% Similarity=0.073 Sum_probs=82.2
Q ss_pred ccEEEEEecC-CeeEeeeCCC-eEEEEeCCCCceE--Eeee--------CCceEEEEEecC---CcEEEeecC-------
Q psy18231 379 DSITSVHVSD-HEILTASLDC-RIRRYDIRTGNLV--TDYV--------GEPIVDACFTRD---CQCILTCST------- 436 (540)
Q Consensus 379 ~~v~~l~~~~-~~l~~~~~dg-~i~iwd~~~~~~~--~~~~--------~~~i~~~~~sp~---~~~l~~~~~------- 436 (540)
.....++|.| ..++++...+ .|++++..+++.. ..+. ......++|+|+ +..|.+...
T Consensus 27 ~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~~ 106 (454)
T 1cru_A 27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKST 106 (454)
T ss_dssp SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC-
T ss_pred CCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCCC
Confidence 3557899988 5666666665 7998887655432 2221 145679999995 444444332
Q ss_pred ------CCeEEEEecccc-------chhh-hhccCcCCcceEEEEecCCCCeEEEeeCCC--------------------
Q psy18231 437 ------DECLRLFDKATG-------ELLE-EYKGHKSGDFRIECCLDSKDSQIFCGSSDG-------------------- 482 (540)
Q Consensus 437 ------dg~i~i~d~~~~-------~~~~-~~~~~~~~v~~~~~~~s~~~~~l~s~s~dg-------------------- 482 (540)
...|.-|+.... +.+. .+.. ...-..-.++|.|||.+.++.+..+
T Consensus 107 ~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~-~~~H~~~~l~f~pDG~Lyv~~Gd~~~~~~~~~~~~~~~~~~p~~~ 185 (454)
T 1cru_A 107 DKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPS-SKDHQSGRLVIGPDQKIYYTIGDQGRNQLAYLFLPNQAQHTPTQQ 185 (454)
T ss_dssp -CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECC-CSSCCEEEEEECTTSCEEEEECCTTTTSGGGTTSCCCTTCCCCHH
T ss_pred ccccccccEEEEEEECCCCCCcCCcEEEEEcCCC-CCCCCCCeEeECCCCeEEEEECCCCCCCccccccccccccccccc
Confidence 234555554321 1111 1211 1111223448999998766644311
Q ss_pred ----------cEEEEEec-CCc-----------ceeEEEecccceeeeEEEEcCCCcEEEeec--CCeeEEEEccc
Q psy18231 483 ----------KIYKWQLV-DSS-----------QISTLIHSVGKAVVNSLCSHPTRKHIMSAC--GNNVKLWTAEE 534 (540)
Q Consensus 483 ----------~i~iwd~~-~~~-----------~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~--d~~i~iw~~~~ 534 (540)
.=+||.+. +++ ....+.. +|. ....++|.|+|++.++-. ++.-.|..+..
T Consensus 186 ~~~aq~~~~~~G~IlRi~~dG~ip~~Npf~~~~~~ei~a~-G~R-Np~gla~dp~G~L~~~d~g~~~~dein~i~~ 259 (454)
T 1cru_A 186 ELNGKDYHTYMGKVLRLNLDGSIPKDNPSFNGVVSHIYTL-GHR-NPQGLAFTPNGKLLQSEQGPNSDDEINLIVK 259 (454)
T ss_dssp HHHTTCCTTCSSEEEEECTTSCCCTTCCEETTEECSEEEB-CCS-EEEEEEECTTSCEEEEEECSSSCEEEEECCT
T ss_pred cccccCCCCCCeeEEEEeCCCCCCCCCCCCCCCcceEEEE-CCC-CcceEEECCCCCEEEEecCCCCCeEEEEecC
Confidence 11344442 333 1223331 443 578999999887666543 55555555544
|
| >1ypf_A GMP reductase; GUAC, purines, pyrimidines, nucleosides, nucleotides, nucleo nucleoside interconversions, spine, structural genomics; 1.80A {Bacillus anthracis} PDB: 2a1y_A* | Back alignment and structure |
|---|
Probab=94.58 E-value=0.043 Score=50.39 Aligned_cols=83 Identities=11% Similarity=0.051 Sum_probs=55.7
Q ss_pred ceecCCceEEeccCCCCCHHHHH-HHHHcCCCEEEeeeeecc-cccccchhhccccccCCCCCCEEEEEecCChhHHHHH
Q psy18231 11 STLLKNLKHCDSTLWTSKLNFRQ-LVRSHNVDLCFTPMIIAD-SFIKSSKARNNEFSTSPEDTPLVVQFASNNHDDFVRA 88 (540)
Q Consensus 11 ~~~~~~~~~~ap~~~~~~~~~r~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~ 88 (540)
+..++.|+++|||+++|+.+|+. +++..|..++.++|.... ++++ .. .+..-|+.+|+ |..++.+..+
T Consensus 42 g~~l~~Pi~~a~mag~s~~~la~a~~~~gg~g~~~~~~~~~~~~~i~-------~~--~~~g~~v~v~~-g~~~~~~~~a 111 (336)
T 1ypf_A 42 KHKFKLPVVPANMQTIIDERIATYLAENNYFYIMHRFQPEKRISFIR-------DM--QSRGLIASISV-GVKEDEYEFV 111 (336)
T ss_dssp TEEESSSEEECSSTTTCCHHHHHHHHHTTCCCCCCCSSGGGHHHHHH-------HH--HHTTCCCEEEE-CCSHHHHHHH
T ss_pred CEEecCcEEECCCCCCChHHHHHHHHhCCCEEEecCCCCHHHHHHHH-------HH--HhcCCeEEEeC-CCCHHHHHHH
Confidence 45678899999999999999966 466667888888774321 1111 11 11234788884 7777777666
Q ss_pred HHHhcCC--CCeEeecc
Q psy18231 89 TQYVAPH--CNGVDLNC 103 (540)
Q Consensus 89 ~~~~~~~--~~~id~~~ 103 (540)
..+++.+ .+.|.+|.
T Consensus 112 ~~~~~~g~~~~~i~i~~ 128 (336)
T 1ypf_A 112 QQLAAEHLTPEYITIDI 128 (336)
T ss_dssp HHHHHTTCCCSEEEEEC
T ss_pred HHHHhcCCCCCEEEEEC
Confidence 5566655 77877765
|
| >3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=94.50 E-value=2.6 Score=37.85 Aligned_cols=128 Identities=12% Similarity=0.042 Sum_probs=68.6
Q ss_pred ecCCeeE-eeeCCCeEEEEeCCCCceEEeeeCCceEEEEEecCCcEEEeecCC--CeEEEEeccccchhhhhccCcCCcc
Q psy18231 386 VSDHEIL-TASLDCRIRRYDIRTGNLVTDYVGEPIVDACFTRDCQCILTCSTD--ECLRLFDKATGELLEEYKGHKSGDF 462 (540)
Q Consensus 386 ~~~~~l~-~~~~dg~i~iwd~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d--g~i~i~d~~~~~~~~~~~~~~~~v~ 462 (540)
+..+.|. +......|..-++..+.....+. .... ..++|++.+|+-...+ ..|..-++.... ...+.. ..+
T Consensus 154 ~~g~~iy~t~~g~~~Iy~~~l~g~~~~~l~~-~~~~-~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~-~~~Lt~--~~~- 227 (302)
T 3s25_A 154 TSDRYFYYNNPKNGQLYRYDTASQSEALFYD-CNCY-KPVVLDDTNVYYMDVNRDNAIVHVNINNPN-PVVLTE--ANI- 227 (302)
T ss_dssp EETTEEEEECTTTCCEEEEETTTTEEEEEEC-SCEE-EEEEEETTEEEEEEGGGTTEEEEECSSSCC-CEECSC--SCE-
T ss_pred EECCEEEEEeCCCceEEEEECCCCCEEEEeC-CCcc-ceeeecCCEEEEEEcCCCcEEEEEECCCCC-eEEEeC--CCc-
Confidence 3334444 33335678888877665443333 3332 3466988888765543 366666765443 223321 111
Q ss_pred eEEEEecCCCCeEEEeeC--CCcEEEEEecCCcceeEEEecccceeeeEEEEcCCCcEEEeec--CCeeEE
Q psy18231 463 RIECCLDSKDSQIFCGSS--DGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC--GNNVKL 529 (540)
Q Consensus 463 ~~~~~~s~~~~~l~s~s~--dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~--d~~i~i 529 (540)
. .++|++++|+-++. .+.|..-++ +|...+.+.. . .+.. +++.+.+|+-.. .+.|..
T Consensus 228 -~--~~~~~g~~Iy~~~~~~~~~i~~~~~-DG~~r~~l~~--~--~~~~--i~i~~d~Iy~td~~~~~i~~ 288 (302)
T 3s25_A 228 -E--HYNVYGSLIFYQRGGDNPALCVVKN-DGTGFKELAK--G--EFCN--INVTSQYVYFTDFVSNKEYC 288 (302)
T ss_dssp -E--EEEEETTEEEEEECSSSCEEEEEET-TSCCCEEEEE--S--CEEE--EEECSSEEEEEETTTCCEEE
T ss_pred -c--eEEECCCEEEEEECCCCcEEEEEEC-CCCccEEeeC--C--ccce--EEEeCCEEEEEECCCCeEEE
Confidence 2 47788888876532 345655554 4555555541 1 2333 445667777665 455443
|
| >2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* | Back alignment and structure |
|---|
Probab=94.40 E-value=2.1 Score=43.71 Aligned_cols=107 Identities=10% Similarity=0.089 Sum_probs=60.2
Q ss_pred CCCCEEEEeeCC----CcEEEEcCCCCeeEEEe-e-----cCCc-ceeEEEEee-CCCeEEEeeCC------CeEEEEEc
Q psy18231 174 VDGSYCLTCGSD----KKIKLWNPYRNLLLKTY-G-----GHAH-EVNDATAAC-DSSQIASGASD------KSVILWEV 235 (540)
Q Consensus 174 pdg~~lat~~~d----g~i~iwd~~~~~~~~~~-~-----~h~~-~v~~l~~sp-~~~~l~s~s~d------g~i~iwd~ 235 (540)
.++..++.||.+ ..+.+||+.+++-...- . .... .-.+++..+ +++.++.|+.+ ..+.+||.
T Consensus 396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~ 475 (695)
T 2zwa_A 396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDM 475 (695)
T ss_dssp CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEET
T ss_pred ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeC
Confidence 456677777753 46888888776533322 1 1111 112333443 77778888754 35788898
Q ss_pred CCCceeEe--ccccCCceeEEEECCCCCEEEEecCCC--cEEEEEecCCC
Q psy18231 236 TTGQPVRR--WREHASKVTCVKFNEDSSVVISGSQDN--TVMMWDVKSRS 281 (540)
Q Consensus 236 ~~~~~~~~--~~~h~~~v~~~~~~~~~~~l~s~~~dg--~i~iwd~~~~~ 281 (540)
.+.+-... +...... .+++...++..++.||.++ .+.+||+.+..
T Consensus 476 ~t~~W~~~~~~p~~R~~-h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~ 524 (695)
T 2zwa_A 476 KTREWSMIKSLSHTRFR-HSACSLPDGNVLILGGVTEGPAMLLYNVTEEI 524 (695)
T ss_dssp TTTEEEECCCCSBCCBS-CEEEECTTSCEEEECCBCSSCSEEEEETTTTE
T ss_pred CCCcEEECCCCCCCccc-ceEEEEcCCEEEEECCCCCCCCEEEEECCCCc
Confidence 77643322 1111111 2233323777888887655 68888877654
|
| >2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.36 E-value=0.071 Score=48.70 Aligned_cols=112 Identities=14% Similarity=0.201 Sum_probs=71.6
Q ss_pred CeeEeeeCCCeEEEEeCCCCceEEeeeCC---ceEEEEE--e-cCCcEEEee-cCCCeEEEEeccccchhhhhcc----C
Q psy18231 389 HEILTASLDCRIRRYDIRTGNLVTDYVGE---PIVDACF--T-RDCQCILTC-STDECLRLFDKATGELLEEYKG----H 457 (540)
Q Consensus 389 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~---~i~~~~~--s-p~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~----~ 457 (540)
+.+++++.||.|.-+|.++|+.+-++... ++....- . .++..++.. +.||.|+.+|..+|.....+.. .
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv~ 90 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLVS 90 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHHT
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeecccccee
Confidence 56899999999999999999998888653 2222110 0 133444443 6899999999887743322211 1
Q ss_pred cCCcce-EEEEe-----cCCCCeEEEeeCCCcEEEEEecCCcceeEEEe
Q psy18231 458 KSGDFR-IECCL-----DSKDSQIFCGSSDGKIYKWQLVDSSQISTLIH 500 (540)
Q Consensus 458 ~~~v~~-~~~~~-----s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~ 500 (540)
..+... -.... +..+..+++|+.+|.+...|+.+|+.+.++..
T Consensus 91 ~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~ 139 (339)
T 2be1_A 91 TSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGP 139 (339)
T ss_dssp TCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEEST
T ss_pred ccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEec
Confidence 111110 00000 01456889999999999999999999998863
|
| >3gka_A N-ethylmaleimide reductase; decode biostructures, ssgcid, niaid, targetdb bupsa00093A, structural genomics; HET: FMN; 2.30A {Burkholderia pseudomallei} SCOP: c.1.4.0 | Back alignment and structure |
|---|
Probab=94.36 E-value=0.09 Score=48.47 Aligned_cols=42 Identities=10% Similarity=-0.046 Sum_probs=28.4
Q ss_pred cceecCCceEEeccCCCCC----HH----HHHHHHHcCCCEEEeeeeecc
Q psy18231 10 RSTLLKNLKHCDSTLWTSK----LN----FRQLVRSHNVDLCFTPMIIAD 51 (540)
Q Consensus 10 ~~~~~~~~~~~ap~~~~~~----~~----~r~~~~~~~~~~~~~~~~~~~ 51 (540)
+++.|+||+++|||.+..- .| .+...++..+++..||.+...
T Consensus 19 g~~~lkNRiv~aPm~~~~a~~~g~pt~~~~~yY~~rA~~GLIite~~~V~ 68 (361)
T 3gka_A 19 GDLTLANRIIMAPLTRARAGDTRTPNALMARYYAERASAGLIISEATSVT 68 (361)
T ss_dssp TTEEESCSEEECCCCCCCSTTTTCCCHHHHHHHHTTTTSSEEEEEEEESS
T ss_pred CCEEecCccEECCCCCCccCCCCCCCHHHHHHHHHHHhCCEEEEcceeec
Confidence 5788999999999987532 22 333333335789999976543
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=94.33 E-value=3.2 Score=45.38 Aligned_cols=88 Identities=16% Similarity=0.152 Sum_probs=57.0
Q ss_pred CCcEEEEcCCCCeeEEEeecCCcceeEEEEeeCCCeEEEeeCCCeEEEEEcCCCceeEeccccCCceeEEEECCCCCEEE
Q psy18231 185 DKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVI 264 (540)
Q Consensus 185 dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~ 264 (540)
..+|.|.|+.++..+.+.. -.--+.-.+|..+.+|.-. ..+++|+|+++.+.+..+.- ..+|.-=.|-.+. .|+
T Consensus 47 ~~~vvIidl~~~~~~~rrp---i~AdsAIMnP~~~iiALra-g~~lQiFnl~~k~klks~~~-~e~VvfWkWis~~-~l~ 120 (1630)
T 1xi4_A 47 QAQVVIIDMNDPSNPIRRP---ISADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTM-TDDVTFWKWISLN-TVA 120 (1630)
T ss_pred CceEEEEECCCCCCccccc---ccchhhccCCCcceEEEec-CCeEEEeehHHhhhhccccc-CCCceEEEecCCC-eeE
Confidence 4478888988765442211 1123445678777666654 67999999999887776643 3456666675443 455
Q ss_pred EecCCCcEEEEEecC
Q psy18231 265 SGSQDNTVMMWDVKS 279 (540)
Q Consensus 265 s~~~dg~i~iwd~~~ 279 (540)
..+ +..|.-|++..
T Consensus 121 lVT-~~aVyHW~~~~ 134 (1630)
T 1xi4_A 121 LVT-DNAVYHWSMEG 134 (1630)
T ss_pred EEc-CCeEEEeccCC
Confidence 444 45799999965
|
| >4ab4_A Xenobiotic reductase B; oxidoreductase, OLD yellow enzyme; HET: FMN TNL EDO; 1.50A {Pseudomonas putida KT2440} | Back alignment and structure |
|---|
Probab=94.15 E-value=0.1 Score=48.08 Aligned_cols=42 Identities=12% Similarity=-0.015 Sum_probs=28.4
Q ss_pred cceecCCceEEeccCCCC--------CHHHHHHHHHcCCCEEEeeeeecc
Q psy18231 10 RSTLLKNLKHCDSTLWTS--------KLNFRQLVRSHNVDLCFTPMIIAD 51 (540)
Q Consensus 10 ~~~~~~~~~~~ap~~~~~--------~~~~r~~~~~~~~~~~~~~~~~~~ 51 (540)
+.+.++||+++|||.+.. +.-.+...++..+++..||-+...
T Consensus 11 g~~~lkNRiv~aPm~~~~a~~~g~pt~~~~~yY~~rA~~GLIite~~~V~ 60 (362)
T 4ab4_A 11 GDLQLPNRIIMAPLTRCRADEGRVPNALMAEYYVQRASAGLILSEATSVS 60 (362)
T ss_dssp TTEEESCSEEECCCCCCCCBTTTBCCHHHHHHHHHTTTSSEEEEEEEESS
T ss_pred CCEEeeCccEECCccCCccCCCCCCCHHHHHHHHHHHhhCEEeeeeeEec
Confidence 568899999999998753 222333333335789999976543
|
| >3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=93.73 E-value=0.54 Score=43.09 Aligned_cols=104 Identities=13% Similarity=0.114 Sum_probs=60.2
Q ss_pred CceEEEEEecCCcEEEeecCCCeEEEEeccccch--hhhh----ccCcCCcceEEEEecCC---CCeEEEe---eCCCcE
Q psy18231 417 EPIVDACFTRDCQCILTCSTDECLRLFDKATGEL--LEEY----KGHKSGDFRIECCLDSK---DSQIFCG---SSDGKI 484 (540)
Q Consensus 417 ~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~--~~~~----~~~~~~v~~~~~~~s~~---~~~l~s~---s~dg~i 484 (540)
.....++|.|+|+++++--..|.|++++...++. +..+ .........+ +++|+ +.+|+.. ..++.|
T Consensus 32 ~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGi--a~~Pdf~~~g~lYv~yt~~~~~~v 109 (347)
T 3das_A 32 NSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGI--ALSPDYASDHMVYAYFTSASDNRI 109 (347)
T ss_dssp SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEE--EECTTHHHHCEEEEEEECSSSEEE
T ss_pred CCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceee--EeccccccCCEEEEEEecCCCCEE
Confidence 4567899999999877766589999998655432 1111 1112233344 89985 3444432 244566
Q ss_pred EEEEecCCc-------cee----EEEecccceeeeEEEEcCCCcEEEeec
Q psy18231 485 YKWQLVDSS-------QIS----TLIHSVGKAVVNSLCSHPTRKHIMSAC 523 (540)
Q Consensus 485 ~iwd~~~~~-------~~~----~~~~~~~~~~v~~l~~s~d~~~l~s~~ 523 (540)
.-|.+..+. ... .+.. .....-..|+|.|||.+.++.+
T Consensus 110 ~R~~~~~~~~~~~~~~~~~~i~~~~p~-~~~H~g~~l~fgpDG~Lyvt~G 158 (347)
T 3das_A 110 VRMLYDEKKPSGEQLGAPDTVFRGIPK-GVIHNGGRIAFGPDKMLYAGTG 158 (347)
T ss_dssp EEEEBCTTSCTTCCBCCCEEEEEEECC-CSSCCCCCEEECTTSCEEEECB
T ss_pred EEEEeCCCCcccccCCCcEEEEEcCCC-CCCccCccccCCCCCCEEEEEC
Confidence 666655421 111 1211 1122356799999998777754
|
| >3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=93.54 E-value=4 Score=36.60 Aligned_cols=123 Identities=10% Similarity=0.018 Sum_probs=66.6
Q ss_pred EEecCCeeEeee----CCCeEEEEeCCCCceEEeeeCCceEEEEEecCCcEEEeecC-CCeEEEEeccccchhhhhccCc
Q psy18231 384 VHVSDHEILTAS----LDCRIRRYDIRTGNLVTDYVGEPIVDACFTRDCQCILTCST-DECLRLFDKATGELLEEYKGHK 458 (540)
Q Consensus 384 l~~~~~~l~~~~----~dg~i~iwd~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~ 458 (540)
++...+.|+-.. .+..|...+++... ...+..+.+ ..++|+++.|+-.+. ...|...++..+.....+.+
T Consensus 111 ~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~-~~~lt~~~~--~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~~~l~~~-- 185 (302)
T 3s25_A 111 ASLIGNYIYYLHYDTQTATSLYRIRIDGEE-KKKIKNHYL--FTCNTSDRYFYYNNPKNGQLYRYDTASQSEALFYDC-- 185 (302)
T ss_dssp EEEETTEEEEEEESSSSCEEEEEEETTSCC-CEEEESSCC--CCSEEETTEEEEECTTTCCEEEEETTTTEEEEEECS--
T ss_pred EEEeCCEEEEEeecCCCCceEEEEECCCCC-eEEEeCCCc--eEeeEECCEEEEEeCCCceEEEEECCCCCEEEEeCC--
Confidence 333445555443 34456666666433 334444333 456888888775554 67888888766543322322
Q ss_pred CCcceEEEEecCCCCeEEEeeCCC--cEEEEEecCCcceeEEEecccceeeeEEEEcCCCcEEEee
Q psy18231 459 SGDFRIECCLDSKDSQIFCGSSDG--KIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSA 522 (540)
Q Consensus 459 ~~v~~~~~~~s~~~~~l~s~s~dg--~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~ 522 (540)
... . .++|++.+|+-...++ .|..-++. +.....+. . ..+ ..|+|++++|..+
T Consensus 186 -~~~-~--~~~P~g~~iy~t~~~~~~~I~~~~ld-G~~~~~Lt--~--~~~--~~~~~~g~~Iy~~ 240 (302)
T 3s25_A 186 -NCY-K--PVVLDDTNVYYMDVNRDNAIVHVNIN-NPNPVVLT--E--ANI--EHYNVYGSLIFYQ 240 (302)
T ss_dssp -CEE-E--EEEEETTEEEEEEGGGTTEEEEECSS-SCCCEECS--C--SCE--EEEEEETTEEEEE
T ss_pred -Ccc-c--eeeecCCEEEEEEcCCCcEEEEEECC-CCCeEEEe--C--CCc--ceEEECCCEEEEE
Confidence 211 2 3558898888665443 45555544 33334443 1 122 2367777777765
|
| >1mzh_A Deoxyribose-phosphate aldolase; alpha-beta barrel, structural genomics, PSI, protein structure initiative; 2.00A {Aquifex aeolicus} SCOP: c.1.10.1 | Back alignment and structure |
|---|
Probab=93.50 E-value=0.0093 Score=51.15 Aligned_cols=77 Identities=14% Similarity=0.047 Sum_probs=48.1
Q ss_pred eEEeccCCCCCHHHHHHHH---HcCCCE--EEeeeeec-ccccccchhhccccccCCCCCCEEEEEecCChhHHHHHHHH
Q psy18231 18 KHCDSTLWTSKLNFRQLVR---SHNVDL--CFTPMIIA-DSFIKSSKARNNEFSTSPEDTPLVVQFASNNHDDFVRATQY 91 (540)
Q Consensus 18 ~~~ap~~~~~~~~~r~~~~---~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~ 91 (540)
..|.|+ .|+.+||++|+ +||++. ++.+|+.. .+.++ + ..... --+.|+..|+.++.+..+.+ .
T Consensus 11 t~l~p~--~t~~~i~~l~~~a~~~g~~~v~v~~~~v~~~~~~l~-~---v~v~~--v~~~P~g~~~~~~k~~~~~~---A 79 (225)
T 1mzh_A 11 AALKPH--LSEKEIEEFVLKSEELGIYAVCVNPYHVKLASSIAK-K---VKVCC--VIGFPLGLNKTSVKVKEAVE---A 79 (225)
T ss_dssp EECCTT--CCHHHHHHHHHHHHHTTCSEEEECGGGHHHHHHHCS-S---SEEEE--EESTTTCCSCHHHHHHHHHH---H
T ss_pred cccCCC--CCHHHHHHHHHHHHHhCCeEEEECHHHHHHHHHHhc-C---Cceee--EecCCCCccchhhhHHHHHH---H
Confidence 457888 69999999999 789877 56667654 34443 1 11111 11345555555544444333 3
Q ss_pred hcCCCCeEe--eccCC
Q psy18231 92 VAPHCNGVD--LNCGC 105 (540)
Q Consensus 92 ~~~~~~~id--~~~gc 105 (540)
++.+.+.|| +|.||
T Consensus 80 ~~~Gad~Id~viN~g~ 95 (225)
T 1mzh_A 80 VRDGAQELDIVWNLSA 95 (225)
T ss_dssp HHTTCSEEEEECCHHH
T ss_pred HHcCCCEEEEEecHHH
Confidence 456889999 89988
|
| >3tjl_A NADPH dehydrogenase; OLD yellow enzyme, flavin mononucleotide, TIM barrel, NADPH oxidoreductase, enone reductase; HET: FMN; 1.50A {Scheffersomyces stipitis cbs 6054} PDB: 3upw_A* 4df2_A* | Back alignment and structure |
|---|
Probab=93.43 E-value=0.088 Score=49.13 Aligned_cols=42 Identities=14% Similarity=0.021 Sum_probs=29.2
Q ss_pred cceecCCceEEeccCCC--------CCHHHHHHHHHc--CCCEEEeeeeecc
Q psy18231 10 RSTLLKNLKHCDSTLWT--------SKLNFRQLVRSH--NVDLCFTPMIIAD 51 (540)
Q Consensus 10 ~~~~~~~~~~~ap~~~~--------~~~~~r~~~~~~--~~~~~~~~~~~~~ 51 (540)
+.+.|++|+++|||.+. |+.-.+...++. |+++..||.+...
T Consensus 21 g~~~LkNRiv~aPm~~~~a~~~g~pt~~~~~yY~~rA~gG~GLIIte~~~V~ 72 (407)
T 3tjl_A 21 GNNTLQTKIVYPPTTRFRALEDHTPSDLQLQYYGDRSTFPGTLLITEATFVS 72 (407)
T ss_dssp TTEEESCSEEBCCCCCCBSCTTSCCBHHHHHHHHHTCCSTTCEEEEEEEESS
T ss_pred CCEEecCCcEECCCCCCccCCCCCCCHHHHHHHHHHHcCCceEEEEcceEEC
Confidence 46889999999999864 333334444443 6899999976543
|
| >1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A | Back alignment and structure |
|---|
Probab=93.01 E-value=1.3 Score=42.47 Aligned_cols=105 Identities=11% Similarity=0.018 Sum_probs=62.0
Q ss_pred cCeEEEEeCCCCCEEEEeeCCCcEEEEcCCCCee--EEEeec------CCcceeEEEEeeC---CCeEE-EeeC------
Q psy18231 165 SGLMHTRFPVDGSYCLTCGSDKKIKLWNPYRNLL--LKTYGG------HAHEVNDATAACD---SSQIA-SGAS------ 226 (540)
Q Consensus 165 ~~v~~v~~spdg~~lat~~~dg~i~iwd~~~~~~--~~~~~~------h~~~v~~l~~sp~---~~~l~-s~s~------ 226 (540)
.....|+|.|||+++++-...+.|++++..+++. +..+.. .......|+|+|+ +..|. +-+.
T Consensus 27 ~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~~ 106 (454)
T 1cru_A 27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKST 106 (454)
T ss_dssp SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC-
T ss_pred CCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCCC
Confidence 4567999999998776654334788888655543 222321 2456779999995 44444 4332
Q ss_pred ------CCeEEEEEcCCC-------ceeE-ecc-ccCCceeEEEECCCCCEEEEecCC
Q psy18231 227 ------DKSVILWEVTTG-------QPVR-RWR-EHASKVTCVKFNEDSSVVISGSQD 269 (540)
Q Consensus 227 ------dg~i~iwd~~~~-------~~~~-~~~-~h~~~v~~~~~~~~~~~l~s~~~d 269 (540)
...|.-+++..+ +.+. .+. ........|.|.|||.+.++.+..
T Consensus 107 ~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~Gd~ 164 (454)
T 1cru_A 107 DKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGDQ 164 (454)
T ss_dssp -CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECCT
T ss_pred ccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEECCC
Confidence 234555555332 1111 122 122347899999999877766543
|
| >3l5l_A Xenobiotic reductase A; TIM barrel, oxidoreductase; HET: BU3 FMN; 1.03A {Pseudomonas putida} SCOP: c.1.4.0 PDB: 3l5m_A* 3n19_B* 3n16_A* 3l68_A* 3l67_A* 3l65_A* 3l66_A* 3n14_A* 2h8z_A* 2h90_A* 2h8x_A* | Back alignment and structure |
|---|
Probab=91.70 E-value=0.42 Score=44.29 Aligned_cols=42 Identities=10% Similarity=-0.014 Sum_probs=28.8
Q ss_pred cceecCCceEEeccCCCC-------CHHHHHHHHH--cCCCEEEeeeeecc
Q psy18231 10 RSTLLKNLKHCDSTLWTS-------KLNFRQLVRS--HNVDLCFTPMIIAD 51 (540)
Q Consensus 10 ~~~~~~~~~~~ap~~~~~-------~~~~r~~~~~--~~~~~~~~~~~~~~ 51 (540)
+++.++||+++|||.+.. +.-.....++ -|+++..||.+.-.
T Consensus 11 g~~~l~NRiv~apm~~~~~~~g~~~~~~~~~y~~rA~gG~Glii~e~~~v~ 61 (363)
T 3l5l_A 11 KDVTLRNRIAIPPMCQYMAEDGMINDWHHVHLAGLARGGAGLLVVEATAVA 61 (363)
T ss_dssp TTEEESSSEEECCCCCCCCBTTBCCHHHHHHHHHHHHTTCSEEEEEEEESS
T ss_pred CCEEeeCceEECCCCCCcCCCCCCCHHHHHHHHHHHccCceEEEecceeeC
Confidence 578899999999999753 3323222222 37899999986543
|
| >2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A | Back alignment and structure |
|---|
Probab=91.64 E-value=9.8 Score=36.47 Aligned_cols=107 Identities=12% Similarity=0.046 Sum_probs=62.9
Q ss_pred ecCeEEEEeCCCCC-EEEEeeCCCcEEEEcCCCC---eeEEEee---------cCCcceeEEEEeeC----CCeEEEeeC
Q psy18231 164 LSGLMHTRFPVDGS-YCLTCGSDKKIKLWNPYRN---LLLKTYG---------GHAHEVNDATAACD----SSQIASGAS 226 (540)
Q Consensus 164 ~~~v~~v~~spdg~-~lat~~~dg~i~iwd~~~~---~~~~~~~---------~h~~~v~~l~~sp~----~~~l~s~s~ 226 (540)
...-..|+|.|||. .|+++...|.|++++.... ..+..+. ........|+|+|+ +.+.++-+.
T Consensus 13 L~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~ 92 (463)
T 2wg3_C 13 LRQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTT 92 (463)
T ss_dssp ESSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEE
T ss_pred CCCceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeC
Confidence 35567899999996 5566678899999975322 1222221 11456789999995 444444332
Q ss_pred --C----------CeEEEEEcCCC----------ceeEecc--ccCCceeEEEECCCCCEEEEecCCC
Q psy18231 227 --D----------KSVILWEVTTG----------QPVRRWR--EHASKVTCVKFNEDSSVVISGSQDN 270 (540)
Q Consensus 227 --d----------g~i~iwd~~~~----------~~~~~~~--~h~~~v~~~~~~~~~~~l~s~~~dg 270 (540)
+ ..|.-|.+..+ +.+..+. .....-..|.|.|||.+.++.+..+
T Consensus 93 ~~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd~~ 160 (463)
T 2wg3_C 93 NQERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGDGM 160 (463)
T ss_dssp CCCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECCTT
T ss_pred CCCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCCCC
Confidence 1 13444655421 1222221 1223467899999998777766543
|
| >2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A | Back alignment and structure |
|---|
Probab=91.14 E-value=2.5 Score=40.63 Aligned_cols=106 Identities=8% Similarity=0.076 Sum_probs=56.4
Q ss_pred CceEEEEEecCCc-EEEeecCCCeEEEEeccccc---hhhh----hc-c----CcCCcceEEEEecCC----CCeEEEee
Q psy18231 417 EPIVDACFTRDCQ-CILTCSTDECLRLFDKATGE---LLEE----YK-G----HKSGDFRIECCLDSK----DSQIFCGS 479 (540)
Q Consensus 417 ~~i~~~~~sp~~~-~l~~~~~dg~i~i~d~~~~~---~~~~----~~-~----~~~~v~~~~~~~s~~----~~~l~s~s 479 (540)
.....|+|.|+|. .|+++...|.|++++..... .+.. +. + ..... +.++++|+ +.+.++-+
T Consensus 14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gl--lgia~~P~f~~n~~lYv~yt 91 (463)
T 2wg3_C 14 RQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGL--LSLAFHPNYKKNGKLYVSYT 91 (463)
T ss_dssp SSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSE--EEEEECTTHHHHCEEEEEEE
T ss_pred CCceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcc--eeeEeCCCCcCCCEEEEEEe
Confidence 3567889999985 44555678899999743221 1111 11 0 02223 34488886 43333332
Q ss_pred C--C----------CcEEEEEecCC----------cceeEEEecccceeeeEEEEcCCCcEEEeecC
Q psy18231 480 S--D----------GKIYKWQLVDS----------SQISTLIHSVGKAVVNSLCSHPTRKHIMSACG 524 (540)
Q Consensus 480 ~--d----------g~i~iwd~~~~----------~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~d 524 (540)
. + ..|.-|.+..+ +.+..+........-..|+|.|||.+.++.+|
T Consensus 92 ~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd 158 (463)
T 2wg3_C 92 TNQERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGD 158 (463)
T ss_dssp ECCCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECC
T ss_pred CCCCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCC
Confidence 2 1 13444555421 22223321122234678999999988887663
|
| >3r2g_A Inosine 5'-monophosphate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.94A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=90.91 E-value=0.31 Score=44.71 Aligned_cols=44 Identities=7% Similarity=-0.042 Sum_probs=34.6
Q ss_pred cceecCCceEEeccCCCCCHHHHHHHHHcCCCEEEeeeeecccc
Q psy18231 10 RSTLLKNLKHCDSTLWTSKLNFRQLVRSHNVDLCFTPMIIADSF 53 (540)
Q Consensus 10 ~~~~~~~~~~~ap~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~ 53 (540)
+++.++.|+++|||.++|+.++...+.+.|+-.+...+.+..++
T Consensus 37 ~g~~l~~Pii~ApM~~vte~~lA~A~a~~Gg~gvi~~~~s~ee~ 80 (361)
T 3r2g_A 37 GKLTLNLPVISANMDTITESNMANFMHSKGAMGALHRFMTIEEN 80 (361)
T ss_dssp SSCEESSCEEECCSTTTCSHHHHHHHHHTTCEEBCCSCSCHHHH
T ss_pred CCEEcCCCEEECCCCCchHHHHHHHHHHcCCCEEEeCCCCHHHH
Confidence 45668889999999999999999999999875555555444333
|
| >3tjx_A Dihydroorotate dehydrogenase; PYRD, dhodh, lmdhodh, oxidored mutation H174A; HET: FMN; 1.64A {Leishmania major} PDB: 3gz3_A* 3gye_A* 3tro_A* | Back alignment and structure |
|---|
Probab=90.70 E-value=0.99 Score=41.68 Aligned_cols=96 Identities=9% Similarity=0.021 Sum_probs=56.3
Q ss_pred ceecCCceEEeccCC-C-CCHHHHHHHHHcCCCEEEeeeeecccccccchhhc----------------------ccc--
Q psy18231 11 STLLKNLKHCDSTLW-T-SKLNFRQLVRSHNVDLCFTPMIIADSFIKSSKARN----------------------NEF-- 64 (540)
Q Consensus 11 ~~~~~~~~~~ap~~~-~-~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------~~~-- 64 (540)
++.+++++.+|. | + .+.-+-..+...|++.+.+--++.....-+.+-+. ..+
T Consensus 43 Gl~f~NPvglAa--G~~~~~~e~~~~l~~~G~G~v~~~tvt~~pq~GNp~PR~~~l~~~~iN~~G~~n~G~~~~~~~~~~ 120 (354)
T 3tjx_A 43 NNTFANPFMNAA--GVMCTTTEELVAMTESASGSLVSKSCTPALREGNPTPRYQALPLGSINSMGLPNNGFDFYLAYAAE 120 (354)
T ss_dssp TEEESSSEEECT--TSSCSSHHHHHHHHHSSCSCEEEEEECSSCBCCSCSCCEEEETTEEEECCCCCBCCHHHHHHHHHH
T ss_pred CEEcCCCcEEcc--CCCCCCHHHHHHHHHcCCCEEEeCCcCcccccCCCCCeEEEcccccccccccCCHHHHHHHHHHHH
Confidence 566899999994 4 2 23444444555677666665555443211111110 001
Q ss_pred ccCCCCCCEEEEEecCChhHHHHHHHHh----cCCCCeEeeccCCCce
Q psy18231 65 STSPEDTPLVVQFASNNHDDFVRATQYV----APHCNGVDLNCGCPQR 108 (540)
Q Consensus 65 ~~~~~~~~~~~q~~~~~~~~~~~~~~~~----~~~~~~id~~~gc~~~ 108 (540)
.....+.|+++++.+.++++.++.++.+ .++.+.|++|.+||..
T Consensus 121 ~~~~~~~pvivsi~g~~~~~~~~~~~~~~~~~~~~ad~ielNiScPn~ 168 (354)
T 3tjx_A 121 QHDYGKKPLFLSMSGLSMRENVEMCKRLAAVATEKGVILELNLSCPNV 168 (354)
T ss_dssp TCCTTTCCEEEEECCSSHHHHHHHHHHHHHHHHHHCCEEEEECC----
T ss_pred hhccCCceEEEEEecCChHHHHHHHHHHHHhhhcCCCEEEeeeCCCCC
Confidence 1124467899999999998877765543 3467899999999964
|
| >3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B | Back alignment and structure |
|---|
Probab=90.67 E-value=8.5 Score=34.01 Aligned_cols=122 Identities=12% Similarity=0.034 Sum_probs=59.6
Q ss_pred cEEEEEecCCeeEeeeCCCeEEEEeCCCCceEE--eeeCCceEEEEEecCCcEEEeecCCCeEEEEeccccchhhhhccC
Q psy18231 380 SITSVHVSDHEILTASLDCRIRRYDIRTGNLVT--DYVGEPIVDACFTRDCQCILTCSTDECLRLFDKATGELLEEYKGH 457 (540)
Q Consensus 380 ~v~~l~~~~~~l~~~~~dg~i~iwd~~~~~~~~--~~~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~ 457 (540)
.|..++......+.-. ||.+..|-......+. ......|..++-..+.. ++. .||.|+.|-....-.+..-...
T Consensus 142 ~i~~i~~G~~~~~~l~-~G~v~~wG~n~~gqlg~p~~~~~~v~~i~~G~~hs-~al--~~G~v~~wG~n~~gqlg~p~~~ 217 (282)
T 3qhy_B 142 GVTALDGGVYTALAVK-NGGVIAWGDNYFGQTTVPAEAQSGVDDVAGGIFHS-LAL--KDGKVIAWGDNRYKQTTVPTEA 217 (282)
T ss_dssp SEEEEEECSSEEEEEE-TTEEEEEECCTTSTTSCCGGGGSSEEEEEECSSEE-EEE--ETTEEEEEECCTTSTTCCCGGG
T ss_pred CeEEEEcccCEEEEEE-CCEEEEecCCCCCCCCCceecCCCeEEEEecCCEE-EEE--ECCeEEEEECCCCCCCCCCccc
Confidence 4666666553333334 7999999765422111 11124566666544433 333 5899999965432111110111
Q ss_pred cCCcceEEEEecCCCCeEEEeeCCCcEEEEEecCCcceeEEEecccceeeeEEEEcCCC
Q psy18231 458 KSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTR 516 (540)
Q Consensus 458 ~~~v~~~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~ 516 (540)
...+..+ +-... ..++.. ||.|+.|-.....++.. ...|.+++-....
T Consensus 218 ~~~v~~i--~~G~~-h~~al~--~g~v~~wG~n~~gq~~v------~~~v~~iaaG~~h 265 (282)
T 3qhy_B 218 LSGVSAI--ASGEW-YSLALK--NGKVIAWGSSRTAPSSV------QSGVSSIEAGPNA 265 (282)
T ss_dssp GSSCCEE--EECSS-CEEEEE--TTEEEEESTTCCCCGGG------SSCEEEEEECSSC
T ss_pred CCCceEE--EcCCC-EEEEEE--CCEEEEecCCCCccccC------CCCcEEEEECcCe
Confidence 1235555 22222 233333 99999997554433221 2245555554433
|
| >3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B | Back alignment and structure |
|---|
Probab=87.79 E-value=14 Score=32.60 Aligned_cols=142 Identities=8% Similarity=0.019 Sum_probs=71.8
Q ss_pred ccEEEEEecCCeeEeeeCCCeEEEEeCCCC-ceE-EeeeCCceEEEEEecCCcEEEeecCCCeEEEEeccccchhhhhcc
Q psy18231 379 DSITSVHVSDHEILTASLDCRIRRYDIRTG-NLV-TDYVGEPIVDACFTRDCQCILTCSTDECLRLFDKATGELLEEYKG 456 (540)
Q Consensus 379 ~~v~~l~~~~~~l~~~~~dg~i~iwd~~~~-~~~-~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~ 456 (540)
..|..++......+.-. ||.|..|-.... ++- .......|..++...+...++ . ||.|+.|-....-.+..-..
T Consensus 102 ~~v~~ia~G~~hs~al~-~G~v~~wG~n~~gqlg~~~~~~~~i~~i~~G~~~~~~l--~-~G~v~~wG~n~~gqlg~p~~ 177 (282)
T 3qhy_B 102 SGVDAIAAGAWASYALK-DGKVIAWGDDSDGQTTVPAEAQSGVTALDGGVYTALAV--K-NGGVIAWGDNYFGQTTVPAE 177 (282)
T ss_dssp SSEEEEEEETTEEEEEE-TTEEEEEECCTTSTTSCCGGGGSSEEEEEECSSEEEEE--E-TTEEEEEECCTTSTTSCCGG
T ss_pred CCeEEEECcCCEEEEEe-CCeEEEecCCCCCcCCCCccCCCCeEEEEcccCEEEEE--E-CCEEEEecCCCCCCCCCcee
Confidence 35777777775544455 999999976542 211 111124566665544333222 3 68898886543222111111
Q ss_pred CcCCcceEEEEecCCCCeEEEeeCCCcEEEEEecCCcceeEEEecccceeeeEEEEcCCCcEEEeecCCeeEEEEcc
Q psy18231 457 HKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAE 533 (540)
Q Consensus 457 ~~~~v~~~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~d~~i~iw~~~ 533 (540)
-...+..+ +... ...++. .||.|+.|-......+..-. .....|..++-......+++ ||.|..|-..
T Consensus 178 ~~~~v~~i--~~G~-~hs~al--~~G~v~~wG~n~~gqlg~p~--~~~~~v~~i~~G~~h~~al~--~g~v~~wG~n 245 (282)
T 3qhy_B 178 AQSGVDDV--AGGI-FHSLAL--KDGKVIAWGDNRYKQTTVPT--EALSGVSAIASGEWYSLALK--NGKVIAWGSS 245 (282)
T ss_dssp GGSSEEEE--EECS-SEEEEE--ETTEEEEEECCTTSTTCCCG--GGGSSCCEEEECSSCEEEEE--TTEEEEESTT
T ss_pred cCCCeEEE--EecC-CEEEEE--ECCeEEEEECCCCCCCCCCc--ccCCCceEEEcCCCEEEEEE--CCEEEEecCC
Confidence 12334444 2222 223444 59999999765432222111 12234666665544444334 7777777543
|
| >3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A | Back alignment and structure |
|---|
Probab=87.20 E-value=2.2 Score=41.32 Aligned_cols=106 Identities=12% Similarity=0.061 Sum_probs=68.5
Q ss_pred eeeecCeEEEEeCCCCCEEEEeeC-CCcEEEEcCCCC------ee-------EEEeecCCcceeEEEEeeCCCeEEEeeC
Q psy18231 161 LFVLSGLMHTRFPVDGSYCLTCGS-DKKIKLWNPYRN------LL-------LKTYGGHAHEVNDATAACDSSQIASGAS 226 (540)
Q Consensus 161 ~~h~~~v~~v~~spdg~~lat~~~-dg~i~iwd~~~~------~~-------~~~~~~h~~~v~~l~~sp~~~~l~s~s~ 226 (540)
+.-......+..+|||++++.++. +.++.++|+++. +. ..... -.-.-...+|.++|.-..|---
T Consensus 319 iP~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e-~GlGPlHt~Fd~~G~aYTtlfi 397 (638)
T 3sbq_A 319 VPVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPE-LGLGPLHTTFDGRGNAYTTLFI 397 (638)
T ss_dssp EEESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCB-CCSCEEEEEECSSSEEEEEETT
T ss_pred EeCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeecc-CCCcccEEEECCCCceEeeeee
Confidence 344566778899999999886654 789999997642 11 22233 2345567899999965566668
Q ss_pred CCeEEEEEcCCC----------ceeEeccccCCceeEEE-----ECCCCCEEEEec
Q psy18231 227 DKSVILWEVTTG----------QPVRRWREHASKVTCVK-----FNEDSSVVISGS 267 (540)
Q Consensus 227 dg~i~iwd~~~~----------~~~~~~~~h~~~v~~~~-----~~~~~~~l~s~~ 267 (540)
|..|.-|++... ..+..+.-|-.+-.-.+ -.++|++|++..
T Consensus 398 dSqvvkWni~~a~~~~~g~~~~~v~~k~dv~YqpGH~~~~~get~~~dGk~lv~ln 453 (638)
T 3sbq_A 398 DSQVVKWNMEEAVRAYKGEKVNYIKQKLDVHYQPGHLHASLCETNEADGKWLVALS 453 (638)
T ss_dssp TTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCSCEEEEEE
T ss_pred cceEEEEeccHHHHHhcCccCCeeeeccccccCCcccccCCCccCCCCccEEEEec
Confidence 999999999653 23334443333222111 145788888764
|
| >2qr6_A IMP dehydrogenase/GMP reductase; NP_599840.1, G reductase domain, structural genomics, joint center for STR genomics, JCSG; HET: MSE; 1.50A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=86.56 E-value=0.61 Score=43.88 Aligned_cols=39 Identities=3% Similarity=-0.192 Sum_probs=33.2
Q ss_pred cceecCCceEEeccCCCCCHHHHHHHHHcCC-CEEEeeee
Q psy18231 10 RSTLLKNLKHCDSTLWTSKLNFRQLVRSHNV-DLCFTPMI 48 (540)
Q Consensus 10 ~~~~~~~~~~~ap~~~~~~~~~r~~~~~~~~-~~~~~~~~ 48 (540)
....++.|+++|||+++++.++.+.+.+.|+ .+..++|+
T Consensus 62 ~g~~l~~Pii~Apm~g~~~~~~a~a~a~~G~~gvl~~~~~ 101 (393)
T 2qr6_A 62 DAYKFDLPFMNHPSDALASPEFVIEMGKQGGLGVINAEGL 101 (393)
T ss_dssp TTEEESSSEEECCCTTTCCHHHHHHHHHTTSBCEEETTSS
T ss_pred cccccCCCeEeCCCCCcccHHHHHHHHHcCCcEEEEecce
Confidence 3566789999999999999999999999865 77888774
|
| >3khj_A Inosine-5-monophosphate dehydrogenase; enzyme-inhibitor complex, oxidoreductase; HET: IMP C64; 2.80A {Cryptosporidium parvum} | Back alignment and structure |
|---|
Probab=86.53 E-value=1.7 Score=40.06 Aligned_cols=88 Identities=9% Similarity=0.027 Sum_probs=51.5
Q ss_pred eecceecCCceEEeccCCCCCHHHHHHHHH-cCCCEEEeeeeecccccccchhhccccccCCCCCCEEEEEecCChhHHH
Q psy18231 8 FNRSTLLKNLKHCDSTLWTSKLNFRQLVRS-HNVDLCFTPMIIADSFIKSSKARNNEFSTSPEDTPLVVQFASNNHDDFV 86 (540)
Q Consensus 8 ~~~~~~~~~~~~~ap~~~~~~~~~r~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~ 86 (540)
+.+.+.++.+++.|||.++|+..+...+.+ -|.++... ..+..+..+ ..+.+. .....|+.+.+..+. ..
T Consensus 38 l~~~~~l~~Pii~apM~~vt~~~lA~avA~~GGlgii~~-~~s~e~~~~----~I~~vk-~~~~~pvga~ig~~~---~e 108 (361)
T 3khj_A 38 LTKNVSLKIPLISSAMDTVTEHLMAVGMARLGGIGIIHK-NMDMESQVN----EVLKVK-NSGGLRVGAAIGVNE---IE 108 (361)
T ss_dssp SSSSCEESSSEEECSSTTTCSHHHHHHHHHTTCEEEECS-SSCHHHHHH----HHHHHH-HTTCCCCEEEECTTC---HH
T ss_pred cccccccCCCEEeecCCCCCcHHHHHHHHHcCCCeEEec-CCCHHHHHH----HHHHHH-hccCceEEEEeCCCH---HH
Confidence 334567788999999999999999985444 45565543 222222221 111111 123467888886655 22
Q ss_pred HHHHHhcCCCCeEeeccC
Q psy18231 87 RATQYVAPHCNGVDLNCG 104 (540)
Q Consensus 87 ~~~~~~~~~~~~id~~~g 104 (540)
.+..+++.+.+.|.++..
T Consensus 109 ~a~~l~eaGad~I~ld~a 126 (361)
T 3khj_A 109 RAKLLVEAGVDVIVLDSA 126 (361)
T ss_dssp HHHHHHHTTCSEEEECCS
T ss_pred HHHHHHHcCcCeEEEeCC
Confidence 333345567788866643
|
| >1eep_A Inosine 5'-monophosphate dehydrogenase; alpha-beta barrel, TIM barrel, IMPDH, IMP dehydrogenase, LOO purine biosynthesis, oxidoreductase; 2.40A {Borrelia burgdorferi} SCOP: c.1.5.1 | Back alignment and structure |
|---|
Probab=86.50 E-value=1.6 Score=41.18 Aligned_cols=43 Identities=2% Similarity=-0.188 Sum_probs=32.1
Q ss_pred ceecCCceEEeccCCCCCHHHHHHHHHcCCCEEEeeeeecccc
Q psy18231 11 STLLKNLKHCDSTLWTSKLNFRQLVRSHNVDLCFTPMIIADSF 53 (540)
Q Consensus 11 ~~~~~~~~~~ap~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~ 53 (540)
...++.++++|||+++++..+...+.+.|+--+..-+++..++
T Consensus 38 g~~l~~Pii~Apm~~~~~~ela~a~a~aGglg~i~~~~s~e~~ 80 (404)
T 1eep_A 38 NISLNIPFLSSAMDTVTESQMAIAIAKEGGIGIIHKNMSIEAQ 80 (404)
T ss_dssp SCEESSSEEECCCTTTCSHHHHHHHHHHTSEEEECSSSCHHHH
T ss_pred CcccCCCEEeCCCCCCCCHHHHHHHHHCCCEEEECCCCCHHHH
Confidence 5667889999999999999999999988763333334444433
|
| >4a3u_A NCR, NADH\:flavin oxidoreductase/NADH oxidase; HET: FMN; 1.70A {Zymomonas mobilis} | Back alignment and structure |
|---|
Probab=84.04 E-value=1.2 Score=41.10 Aligned_cols=41 Identities=7% Similarity=-0.071 Sum_probs=30.0
Q ss_pred cceecCCceEEeccCCC--------CCHHHHHHHHHcCCCEEEeeeeec
Q psy18231 10 RSTLLKNLKHCDSTLWT--------SKLNFRQLVRSHNVDLCFTPMIIA 50 (540)
Q Consensus 10 ~~~~~~~~~~~ap~~~~--------~~~~~r~~~~~~~~~~~~~~~~~~ 50 (540)
+++.++||+++|||... |+.-.+...++.++++..||.+..
T Consensus 11 g~~~lkNRiv~apm~~~~a~~dg~~t~~~~~~y~~rA~gGliite~~~V 59 (358)
T 4a3u_A 11 GAFTAKNRIWMAPLTRGRATRDHVPTEIMAEYYAQRASAGLIISEATGI 59 (358)
T ss_dssp TTEEESCSEEECCCCCCCSCTTCCCCHHHHHHHHHTTTSSSEEEEEEES
T ss_pred CCEEECCceEEcccCCCccCCCCCCCHHHHHHHHHHcCCCEEEEeeeEE
Confidence 57899999999999753 444455555555789999997554
|
| >4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi} | Back alignment and structure |
|---|
Probab=83.49 E-value=42 Score=34.21 Aligned_cols=109 Identities=6% Similarity=-0.047 Sum_probs=58.3
Q ss_pred EEecCCcEEEee----------cCCCeEEEEeccccc-------hhhhhccCcCCcceEEEEecCCCCeEEEeeCCCc--
Q psy18231 423 CFTRDCQCILTC----------STDECLRLFDKATGE-------LLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGK-- 483 (540)
Q Consensus 423 ~~sp~~~~l~~~----------~~dg~i~i~d~~~~~-------~~~~~~~~~~~v~~~~~~~s~~~~~l~s~s~dg~-- 483 (540)
..++++.+++.. ...+.|...|+.++. ....+-.+......-.+.+..+ .++++...++.
T Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~l~~~~~~~~~~~ 373 (711)
T 4hvt_A 295 QGSFKEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFTPTANEVFNFISTTKD-RVFLATYDNVVAK 373 (711)
T ss_dssp EEEETTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEECCCTTEEEEEEEECSS-CEEEEEEETTEEE
T ss_pred eeeECCEEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEECCCCCCeEEEEEEECC-EEEEEEEECCEEE
Confidence 345566665532 136778888987652 1222222333222233366654 56777777764
Q ss_pred EEEEEecCCc-ceeE-EEecccceeeeEEEEcCCCcEE-Eeec----CCeeEEEEcc
Q psy18231 484 IYKWQLVDSS-QIST-LIHSVGKAVVNSLCSHPTRKHI-MSAC----GNNVKLWTAE 533 (540)
Q Consensus 484 i~iwd~~~~~-~~~~-~~~~~~~~~v~~l~~s~d~~~l-~s~~----d~~i~iw~~~ 533 (540)
|+++|+.+++ .... +.. ...+.+.....++++..+ ++.+ -..+..+++.
T Consensus 374 l~~~~~~~g~~~~~~~i~l-p~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~~~~d~~ 429 (711)
T 4hvt_A 374 VVTFTLENEQWTKPVVLKL-PYQNAIFGMSSYEEEEEALITIENSIVPPTIYLWVKT 429 (711)
T ss_dssp EEEECEETTEECCCEEECC-CSTTCEEEEECCTTCSCEEEEEECSSSCCEEEEECTT
T ss_pred EEEEECCCCceEEEeccCC-CCCeEEEEEeecCcCCEEEEEEecCCCCCEEEEEeCC
Confidence 6777777765 2334 332 113456667777776543 3322 2466666654
|
| >4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B | Back alignment and structure |
|---|
Probab=82.78 E-value=19 Score=38.26 Aligned_cols=37 Identities=19% Similarity=0.048 Sum_probs=31.4
Q ss_pred eEEEEecCCCCeEEEeeCCCcEEEEEecCCcceeEEE
Q psy18231 463 RIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLI 499 (540)
Q Consensus 463 ~~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~ 499 (540)
.++.+..++..++++-+.|+++|+|++.+++++.+..
T Consensus 238 ~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~d 274 (950)
T 4gq2_M 238 IISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE 274 (950)
T ss_dssp EEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred EEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeec
Confidence 3444677888899999999999999999999888764
|
| >4gbu_A NADPH dehydrogenase 1; alpha/beta barrel, enenone reductase, alkene reductase, NADP oxidoreductase, carvone, enenatioselectivity; HET: 0WV 1PE FMN; 1.18A {Saccharomyces pastorianus} PDB: 4ge8_A* 1oya_A* 1oyb_A* 1oyc_A* 3tx9_A* 3rnd_A* 1k02_A* 1k03_A* 1bwk_A* 1bwl_A* | Back alignment and structure |
|---|
Probab=80.20 E-value=2.1 Score=40.22 Aligned_cols=42 Identities=5% Similarity=-0.108 Sum_probs=28.6
Q ss_pred cceecCCceEEeccCCC--------C--CHHHHHHHHHc--CCCEEEeeeeecc
Q psy18231 10 RSTLLKNLKHCDSTLWT--------S--KLNFRQLVRSH--NVDLCFTPMIIAD 51 (540)
Q Consensus 10 ~~~~~~~~~~~ap~~~~--------~--~~~~r~~~~~~--~~~~~~~~~~~~~ 51 (540)
+++.|+||+++|||.+. + ++..+...++. |+++..||.+...
T Consensus 24 g~l~lkNRiv~aPm~~~~a~~~g~v~~~d~~~~yy~~rA~GG~GLIite~~~V~ 77 (400)
T 4gbu_A 24 GNNELLHRAVIPPLTRMRALHPGNIPNRDWAVEYYTQRAQRPGTMIITEGAFIS 77 (400)
T ss_dssp TTEEESSSEEBCCCCCCCCBTTTTBCCTTTHHHHHHHHTCSTTCEEECSCEESS
T ss_pred CCEEEcCcCEeCCccCCcCCCCCCCCCHHHHHHHHHHHHcCCeEEEEEcCeEEC
Confidence 46889999999999753 2 22333333443 6899999986543
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 540 | ||||
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 3e-22 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 1e-19 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 5e-13 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 1e-18 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 2e-11 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 2e-18 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 1e-14 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 3e-13 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 3e-08 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 8e-18 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 6e-17 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 2e-15 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 4e-12 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 7e-09 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 3e-07 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 1e-14 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 3e-07 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 3e-07 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 2e-14 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 9e-09 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 2e-08 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 1e-07 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 2e-13 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 3e-12 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 2e-05 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 2e-04 | |
| d1vhna_ | 305 | c.1.4.1 (A:) Putative flavin oxidoreducatase TM009 | 3e-13 | |
| d1pgua1 | 325 | b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba | 1e-12 | |
| d1pgua1 | 325 | b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba | 7e-08 | |
| d1pgua1 | 325 | b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba | 1e-07 | |
| d1pgua1 | 325 | b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba | 4e-07 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 3e-12 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 1e-08 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 2e-06 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 5e-04 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 2e-11 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 4e-11 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 7e-05 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 7e-04 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 0.001 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 3e-11 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 8e-11 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 1e-10 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 1e-09 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 1e-07 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 3e-05 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 3e-10 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 2e-08 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 5e-08 | |
| d1jmxb_ | 346 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 5e-10 | |
| d1jmxb_ | 346 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 5e-07 | |
| d1jmxb_ | 346 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 2e-04 | |
| d1k32a3 | 360 | b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar | 3e-09 | |
| d1k32a3 | 360 | b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar | 6e-07 | |
| d1k32a3 | 360 | b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar | 8e-06 | |
| d1k32a3 | 360 | b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar | 1e-04 | |
| d1pbyb_ | 337 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 6e-09 | |
| d1pbyb_ | 337 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 2e-07 | |
| d1pbyb_ | 337 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 9e-06 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 1e-08 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 5e-07 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 3e-06 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 0.001 | |
| d1mdah_ | 368 | b.69.2.1 (H:) Methylamine dehydrogenase, H-chain { | 3e-07 | |
| d1mdah_ | 368 | b.69.2.1 (H:) Methylamine dehydrogenase, H-chain { | 4e-04 | |
| d2bbkh_ | 355 | b.69.2.1 (H:) Methylamine dehydrogenase, H-chain { | 9e-07 | |
| d2bbkh_ | 355 | b.69.2.1 (H:) Methylamine dehydrogenase, H-chain { | 0.002 | |
| d1l0qa2 | 301 | b.69.2.3 (A:1-301) Surface layer protein {Archaeon | 5e-04 | |
| d1qksa2 | 432 | b.70.2.1 (A:136-567) C-terminal (heme d1) domain o | 0.002 |
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 95.6 bits (236), Expect = 3e-22
Identities = 50/320 (15%), Positives = 101/320 (31%), Gaps = 23/320 (7%)
Query: 189 KLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPVRRWREHA 248
K W P R GH V S + S + D ++ +W+ TG R + H
Sbjct: 1 KEWIP-RPPEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHT 59
Query: 249 SKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQVRCL------------NEALKE 296
V + F+ ++ S S D T+ +WD + + +
Sbjct: 60 DSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSA 119
Query: 297 ARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSG------VLMSTQHLMVLL 350
+RD + + G + + + S +
Sbjct: 120 SRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKA 179
Query: 351 DFLGSTQIGDVTPISIHNSCFQALKEARDSITSVHVSDHEILTASLDCRIRRYDIRTGNL 410
+ + + + +S + +L+ S D I+ +D+ TG
Sbjct: 180 ELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMC 239
Query: 411 VTDYVG--EPIVDACFTRDCQCILTCSTDECLRLFDKATGELLEEYKGHKSGDFRIECCL 468
+ VG + F + IL+C+ D+ LR++D ++ H+ ++
Sbjct: 240 LMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHK 299
Query: 469 DSKDSQIFCGSSDGKIYKWQ 488
+ + GS D + W+
Sbjct: 300 TAP--YVVTGSVDQTVKVWE 317
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 87.5 bits (215), Expect = 1e-19
Identities = 30/112 (26%), Positives = 53/112 (47%)
Query: 165 SGLMHTRFPVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASG 224
+G + G + L+ DK IK+W+ + L T GH + V I S
Sbjct: 206 TGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSC 265
Query: 225 ASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWD 276
A DK++ +W+ + ++ H VT + F++ + V++GS D TV +W+
Sbjct: 266 ADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 317
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 67.8 bits (164), Expect = 5e-13
Identities = 39/224 (17%), Positives = 82/224 (36%), Gaps = 25/224 (11%)
Query: 82 HDDFVRATQYVAPHCNGVDLNCGCPQRWAIKEGYGCALLSKQRTHPLLFSLPRTITRILY 141
H D V+ + + + +G+ C H + +
Sbjct: 58 HTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIV 117
Query: 142 ELPKEWSIRVYRPLTVNRELFVLSG----LMHTRFPVDGSYCLTCGSDKKIKLWNPYRNL 197
++ +I+++ T + +G + R DG+ +C +D+ +++W
Sbjct: 118 SASRDKTIKMWEVQT-GYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKE 176
Query: 198 LLKTYGGHAHEVNDATAACDSSQIA--------------------SGASDKSVILWEVTT 237
H H V + A +SS + SG+ DK++ +W+V+T
Sbjct: 177 CKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVST 236
Query: 238 GQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRS 281
G + H + V V F+ ++S + D T+ +WD K++
Sbjct: 237 GMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKR 280
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 85.3 bits (209), Expect = 1e-18
Identities = 57/349 (16%), Positives = 109/349 (31%), Gaps = 22/349 (6%)
Query: 191 WNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPVRRWREHASK 250
W K GH V ++I SG+ D ++ +W TG+ +R H
Sbjct: 1 WRRGELKSPKVLKGHDDHVITC-LQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGG 59
Query: 251 VTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKS 310
V + DN ++ S L +
Sbjct: 60 VWSSQMR-----------DNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEK 108
Query: 311 TKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISI-HNS 369
S ++ + L+ L+ V + V +
Sbjct: 109 RVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETET 168
Query: 370 CFQALKEARDSITSVHVSDHEILTASLDCRIRRYDIRTGNLVTDYVGEPIVDACFTRDCQ 429
C L+ + + S+ +++ SLD IR +D+ TGN + G + +
Sbjct: 169 CLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDN 228
Query: 430 CILTCSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQL 489
+++ + D ++++D TG+ L+ +G + C +K+ I S DG + W L
Sbjct: 229 ILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVI-TSSDDGTVKLWDL 287
Query: 490 VDSSQISTLIHSVGK---AVVNSLCSHPTRKHIMSACGNN-----VKLW 530
I L+ VV + + T+ N + +
Sbjct: 288 KTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVL 336
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 63.3 bits (152), Expect = 2e-11
Identities = 45/329 (13%), Positives = 103/329 (31%), Gaps = 24/329 (7%)
Query: 172 FPVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVI 231
G+ ++ D +K+W+ L+T GH V + +
Sbjct: 23 LQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVW----SSQMRDNIIISGSTDRT 78
Query: 232 LWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQVRCLN 291
L + T + V+SGS+D T+ +WD+++ + +
Sbjct: 79 LKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGH-- 136
Query: 292 EALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLD 351
+ + + K+ L+ L +
Sbjct: 137 -------VAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDGIH 189
Query: 352 FLGSTQIGDVTPISI-HNSCFQALKEARDSITSVHVSDHEILTASLDCRIRRYDIRTGNL 410
+ + + + +C L + + + + D+ +++ + D ++ +DI+TG
Sbjct: 190 VVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDNILVSGNADSTVKIWDIKTGQC 249
Query: 411 VTDYVGEPIVDACFTRDCQC---ILTCSTDECLRLFDKATGELLEEYKGHKSGDFR--IE 465
+ G + T ++T S D ++L+D TGE + +SG +
Sbjct: 250 LQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVW 309
Query: 466 CCLDSKDSQIFC-----GSSDGKIYKWQL 489
S + G+ + K+
Sbjct: 310 RIRASNTKLVCAVGSRNGTEETKLLVLDF 338
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 85.2 bits (209), Expect = 2e-18
Identities = 55/355 (15%), Positives = 119/355 (33%), Gaps = 46/355 (12%)
Query: 180 LTCGSDKKIKLWNP----YRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEV 235
L ++ L+NP ++ L H V + D +A+G +K+ ++ V
Sbjct: 32 LKKQTNDYYILYNPALPREIDVELHKSLDHTSVVCCVKFSNDGEYLATG-CNKTTQVYRV 90
Query: 236 TTGQPVRRWRE------------------HASKVTCVKFNEDSSVVISGSQDNTVMMWDV 277
+ G V R + + V F+ D + +G++D + +WD+
Sbjct: 91 SDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDI 150
Query: 278 KSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLS 337
++R I + + L T
Sbjct: 151 ENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTV 210
Query: 338 GVLMSTQHLMVLLDFLGSTQIGDV---TPISIHNSCFQALKEARDSITSVHVS--DHEIL 392
V + + ++ D + +S ++ +DS+ SV + ++
Sbjct: 211 AVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVV 270
Query: 393 TASLDCRIRRYDIRTGNLVTDYVG--------------EPIVDACFTRDCQCILTCSTDE 438
+ SLD ++ ++++ N +D + ++ T++ + IL+ S D
Sbjct: 271 SGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDR 330
Query: 439 CLRLFDKATGELLEEYKGHKSG----DFRIECCLDSKDSQIFCGSSDGKIYKWQL 489
+ +DK +G L +GH++ L + + GS D K W+
Sbjct: 331 GVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKY 385
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 73.7 bits (179), Expect = 1e-14
Identities = 60/356 (16%), Positives = 107/356 (30%), Gaps = 49/356 (13%)
Query: 221 IASGASDKSVILWEVTTGQPVR----RWREHASKVTCVKFNEDSSVVISGSQDNTVMMWD 276
++ IL+ + + + +H S V CVKF+ D + +G + T ++
Sbjct: 31 ALKKQTNDYYILYNPALPREIDVELHKSLDHTSVVCCVKFSNDGEYLATGC-NKTTQVYR 89
Query: 277 VKSRS-------HHPIQVRCLNEALKEARDSITSVHSLVKSTKNHL---------SNGLL 320
V S N + S + S+ S
Sbjct: 90 VSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWD 149
Query: 321 TKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEARDS 380
+ + L L+ G + + S ++++ +
Sbjct: 150 IENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTT 209
Query: 381 ITSVHVSDHEILTASLDCRIRRYDIRTGNLVTDYVGE---------PIVDACFTRDCQCI 431
+ I SLD +R +D TG LV E + FTRD Q +
Sbjct: 210 VAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSV 269
Query: 432 LTCSTDECLRLFDKATGELLEEYKGHKS----------GDFRIECCLDSKDSQIFCGSSD 481
++ S D ++L++ + K S DF + D I GS D
Sbjct: 270 VSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKD 329
Query: 482 GKIYKWQLVDSSQISTL------IHSVGKAVVNSLCSHPTRKHIMSACGNN-VKLW 530
+ W + + L + SV AV N P + G+ ++W
Sbjct: 330 RGVLFWDKKSGNPLLMLQGHRNSVISV--AVANGSSLGPEYNVFATGSGDCKARIW 383
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 69.4 bits (168), Expect = 3e-13
Identities = 31/126 (24%), Positives = 48/126 (38%), Gaps = 18/126 (14%)
Query: 171 RFPVDGSYCLTCGSDKKIKLWN------------PYRNLLLKTYGGHAHEVNDATAACDS 218
F DG ++ D+ +KLWN P TY GH V +
Sbjct: 261 VFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQND 320
Query: 219 SQIASGASDKSVILWEVTTGQPVRRWREHASKVTCV------KFNEDSSVVISGSQDNTV 272
I SG+ D+ V+ W+ +G P+ + H + V V + +V +GS D
Sbjct: 321 EYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKA 380
Query: 273 MMWDVK 278
+W K
Sbjct: 381 RIWKYK 386
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 53.3 bits (126), Expect = 3e-08
Identities = 51/284 (17%), Positives = 96/284 (33%), Gaps = 37/284 (13%)
Query: 171 RFPVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSV 230
F DG + T D+ I++W+ ++ GH ++ ++ SG+ D++V
Sbjct: 128 CFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTV 187
Query: 231 ILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQVRCL 290
+W++ TGQ T D + +GS D V +WD ++ L
Sbjct: 188 RIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLV----ERL 243
Query: 291 NEALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLL 350
+ + SV+S+V + V+ + V L
Sbjct: 244 DSENESGTGHKDSVYSVVFTRDGQS-----------------------VVSGSLDRSVKL 280
Query: 351 DFLGSTQIGDVTPISIHNSCFQALKEARDSITSVHVS--DHEILTASLDCRIRRYDIRTG 408
L + + +C +D + SV + D IL+ S D + +D ++G
Sbjct: 281 WNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSG 340
Query: 409 NLVTDYVGE--------PIVDACFTRDCQCILTCSTDECLRLFD 444
N + G + + T S D R++
Sbjct: 341 NPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWK 384
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 82.5 bits (202), Expect = 8e-18
Identities = 50/297 (16%), Positives = 91/297 (30%), Gaps = 11/297 (3%)
Query: 198 LLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFN 257
+T GH ++ DS + S + D +I+W+ T V +S V +
Sbjct: 47 TRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYA 106
Query: 258 EDSSVVISGSQDNTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHLSN 317
+ V G DN ++++K+R + R + T + +
Sbjct: 107 PSGNYVACGGLDNICSIYNLKTREGNVRVSRE-LAGHTGYLSCCRFLDDNQIVTSSGDTT 165
Query: 318 GLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEA 377
L + + G V+ + L G+ C Q
Sbjct: 166 CALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGH 225
Query: 378 RDSITSVHVS--DHEILTASLDCRIR----RYDIRTGNLVTDYVGEPIVDACFTRDCQCI 431
I ++ + T S D R R D D + I F++ + +
Sbjct: 226 ESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLL 285
Query: 432 LTCSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQ-IFCGSSDGKIYKW 487
L D ++D + GH + R+ C + D + GS D + W
Sbjct: 286 LAGYDDFNCNVWDALKADRAGVLAGHDN---RVSCLGVTDDGMAVATGSWDSFLKIW 339
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 79.8 bits (195), Expect = 6e-17
Identities = 49/300 (16%), Positives = 91/300 (30%), Gaps = 14/300 (4%)
Query: 239 QPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQVRCLNEALKEAR 298
+ R R H +K+ + + DS +++S SQD +++WD + + V +
Sbjct: 46 RTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNK----VHAIPLRSSWVM 101
Query: 299 DSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQI 358
+ + + + L ++ L+G L D T
Sbjct: 102 TCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSS 161
Query: 359 GDVTPISIHNSCFQALKEARDSITSVHVSDHEI-----LTASLDCRIRRYDIRTGNLVTD 413
GD T Q V ++ + D + +D+R G
Sbjct: 162 GDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQT 221
Query: 414 YVG--EPIVDACFTRDCQCILTCSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSK 471
+ G I CF + T S D RLFD + L Y
Sbjct: 222 FTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKS 281
Query: 472 DSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNN-VKLW 530
+ G D W + + + L + V+ L + + ++ +K+W
Sbjct: 282 GRLLLAGYDDFNCNVWDALKADRAGVLAGHDNR--VSCLGVTDDGMAVATGSWDSFLKIW 339
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 75.2 bits (183), Expect = 2e-15
Identities = 20/107 (18%), Positives = 44/107 (41%), Gaps = 2/107 (1%)
Query: 172 FPVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHE--VNDATAACDSSQIASGASDKS 229
F +G+ T D +L++ + L TY + + + + +G D +
Sbjct: 234 FFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFN 293
Query: 230 VILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWD 276
+W+ H ++V+C+ +D V +GS D+ + +W+
Sbjct: 294 CNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 65.5 bits (158), Expect = 4e-12
Identities = 25/131 (19%), Positives = 48/131 (36%), Gaps = 8/131 (6%)
Query: 168 MHTRFPVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASD 227
M D ++ D KLW+ + +T+ GH ++N + + A+G+ D
Sbjct: 188 MSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDD 247
Query: 228 KSVIL--WEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSR----- 280
+ L +T V F++ ++++G D +WD
Sbjct: 248 ATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGV 307
Query: 281 -SHHPIQVRCL 290
+ H +V CL
Sbjct: 308 LAGHDNRVSCL 318
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 55.1 bits (131), Expect = 7e-09
Identities = 28/122 (22%), Positives = 50/122 (40%)
Query: 168 MHTRFPVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASD 227
+ +D + +T D LW+ T+ GH +V + A D+ SGA D
Sbjct: 146 LSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACD 205
Query: 228 KSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQV 287
S LW+V G + + H S + + F + + +GS D T ++D+++
Sbjct: 206 ASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYS 265
Query: 288 RC 289
Sbjct: 266 HD 267
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 50.1 bits (118), Expect = 3e-07
Identities = 32/279 (11%), Positives = 82/279 (29%), Gaps = 5/279 (1%)
Query: 171 RFPVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSV 230
+ D ++ D K+ +W+ Y + + V A + +A G D
Sbjct: 62 HWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNIC 121
Query: 231 ILWEVTTGQPVRRWREHAS---KVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQV 287
++ + T + R + D + +++ S D T +WD+++
Sbjct: 122 SIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFT 181
Query: 288 RCLNEALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLM 347
+ + + T + + + + + + + + +
Sbjct: 182 GHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAF 241
Query: 348 VLLDFLGSTQIGDVTPISIHNSCFQALKEARDSITSVHVSDHEILTASLDCRIRRYDIRT 407
+ ++ D+ + + S S +L D +D
Sbjct: 242 ATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALK 301
Query: 408 GNLVTDYVG--EPIVDACFTRDCQCILTCSTDECLRLFD 444
+ G + T D + T S D L++++
Sbjct: 302 ADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 72.2 bits (175), Expect = 1e-14
Identities = 30/283 (10%), Positives = 75/283 (26%), Gaps = 14/283 (4%)
Query: 217 DSSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWD 276
+I + SV V + + EH+ + T K + SG V +WD
Sbjct: 28 AGDKIQY-CNGTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWD 86
Query: 277 VKSRSHHPIQVRCLNEALKEARDS---ITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLN 333
+H + + + ++ + + L
Sbjct: 87 TTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQA 146
Query: 334 GLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEARDSITSVHVSDHEILT 393
++ V ++ + + +
Sbjct: 147 RAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFAS 206
Query: 394 ASLDCRIRRYDIRTGNL---------VTDYVGEPIVDACFTRDCQCILTCSTDECLRLFD 444
D I Y+ G + ++ D I + S D+ +++++
Sbjct: 207 TGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWN 266
Query: 445 KATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKW 487
AT ++ + + + + +K + + S++G I
Sbjct: 267 VATLKVEKTIPVGTRIEDQQLGIIWTKQA-LVSISANGFINFV 308
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 50.3 bits (118), Expect = 3e-07
Identities = 16/110 (14%), Positives = 36/110 (32%), Gaps = 1/110 (0%)
Query: 168 MHTRFPVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASD 227
+ F G + H+ V T + D ++IAS ++D
Sbjct: 200 DGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASAD 259
Query: 228 KSVILWEVTTGQPVRRWREHAS-KVTCVKFNEDSSVVISGSQDNTVMMWD 276
K++ +W V T + + + + ++S S + + +
Sbjct: 260 KTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVN 309
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 49.9 bits (117), Expect = 3e-07
Identities = 32/283 (11%), Positives = 75/283 (26%), Gaps = 14/283 (4%)
Query: 175 DGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWE 234
G C + + + Y H+H+ A + ASG +V +W+
Sbjct: 28 AGDKIQYC-NGTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWD 86
Query: 235 VTTGQPV--RRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQVRCLNE 292
T + + V + ++ +S + + + +
Sbjct: 87 TTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQA 146
Query: 293 ALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDF 352
+ D S + S + + + F F+ + + L
Sbjct: 147 RAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFAS 206
Query: 353 LGSTQI--------GDVTPISIHNSCFQALKEARDSITSVHVSDHEILTASLDCRIRRYD 404
G G T + +S + +I +AS D I+ ++
Sbjct: 207 TGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWN 266
Query: 405 IRTGNLVTDYVGE---PIVDACFTRDCQCILTCSTDECLRLFD 444
+ T + Q +++ S + + +
Sbjct: 267 VATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVN 309
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 72.5 bits (176), Expect = 2e-14
Identities = 33/321 (10%), Positives = 79/321 (24%), Gaps = 9/321 (2%)
Query: 175 DGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWE 234
DG + R+ H V T + + + +G V +W+
Sbjct: 20 DGQMQPVPFPPDALIGPGIPRHARQINTLNHGEVVCAVTISNPTRHVYTG-GKGCVKVWD 78
Query: 235 VTTGQPVR-----RWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQVRC 289
++ + + K D +I G + +T+ +WD+ + +
Sbjct: 79 ISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELT 138
Query: 290 LNEALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVL 349
+ A + R + + + + L
Sbjct: 139 SSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKL 198
Query: 350 LDFLGSTQIGDVTPISIHNSCFQALKEARDSITSVHVSDHEILTASLDCRIRRYDIRTGN 409
+ S+ + + + +
Sbjct: 199 WTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDK 258
Query: 410 LVTDYVGEPIVDACFTRDCQCILTCSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLD 469
++ F + ++ D L + G + + K S + C +
Sbjct: 259 YQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKESSS---VLSCDIS 315
Query: 470 SKDSQIFCGSSDGKIYKWQLV 490
D I GS D K ++++
Sbjct: 316 VDDKYIVTGSGDKKATVYEVI 336
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 54.8 bits (130), Expect = 9e-09
Identities = 32/326 (9%), Positives = 74/326 (22%), Gaps = 15/326 (4%)
Query: 212 ATAACDSSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNT 271
A Q D + + + H V V + + V +G
Sbjct: 16 HVTADGQMQPVPFPPDALIGPGIPRHARQINTL-NHGEVVCAVTISNPTRHVYTGG-KGC 73
Query: 272 VMMWDVKSRSHHPIQVRCLNEALKEARDSITSV------HSLVKSTKNHLSNGLLTKLVF 325
V +WD+ SH + + I S +L+ + +
Sbjct: 74 VKVWDI---SHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPT 130
Query: 326 AFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEARDSITSVH 385
L + F + + + + + D + +
Sbjct: 131 PRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCID 190
Query: 386 VSDHEILTASLDCRIRRYDIRTGNLVTDYVGEPIVDACFTRDCQCILTCSTDECLRLFDK 445
+S+ + + C + +
Sbjct: 191 ISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEV 250
Query: 446 ATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKA 505
++Y+ H + D + W+ + I S +
Sbjct: 251 LHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKES---S 307
Query: 506 VVNSLCSHPTRKHIMSACGNN-VKLW 530
V S K+I++ G+ ++
Sbjct: 308 SVLSCDISVDDKYIVTGSGDKKATVY 333
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 54.0 bits (128), Expect = 2e-08
Identities = 22/280 (7%), Positives = 67/280 (23%), Gaps = 9/280 (3%)
Query: 171 RFPVDGSYCLTCGSDKKIKLWNPYRN-----LLLKTYGGHAHEVNDATAACDSSQIASGA 225
+ T G +K+W+ + + + D + G
Sbjct: 58 TISNPTRHVYT-GGKGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGG 116
Query: 226 SDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPI 285
++ +W++ P + +S C + S + + + +
Sbjct: 117 EASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLV 176
Query: 286 QVRCLNEALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQH 345
+ + D L ++ + + + +
Sbjct: 177 RQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTG 236
Query: 346 LMVLLDFLGSTQIGDVTPISIHNSCFQALKEARDSITSVHVSDHEILTASLDCRIRRYDI 405
+ + S E+ ++ D + +
Sbjct: 237 EWLAVGMESSNVEVLHVNKPDKYQLHL--HESCVLSLKFAYCGKWFVSTGKDNLLNAWRT 294
Query: 406 RTGNLVTDYVGE-PIVDACFTRDCQCILTCSTDECLRLFD 444
G + ++ + D + I+T S D+ +++
Sbjct: 295 PYGASIFQSKESSSVLSCDISVDDKYIVTGSGDKKATVYE 334
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 51.3 bits (121), Expect = 1e-07
Identities = 13/68 (19%), Positives = 26/68 (38%), Gaps = 1/68 (1%)
Query: 168 MHTRFPVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASD 227
+ +F G + ++ G D + W + + V + D I +G+ D
Sbjct: 269 LSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK-ESSSVLSCDISVDDKYIVTGSGD 327
Query: 228 KSVILWEV 235
K ++EV
Sbjct: 328 KKATVYEV 335
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 68.7 bits (166), Expect = 2e-13
Identities = 44/295 (14%), Positives = 91/295 (30%), Gaps = 13/295 (4%)
Query: 199 LKTYGGHAHEVNDATA-ACDSSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFN 257
L+ + D +I SG D ++ +W+ T + R H V C++++
Sbjct: 5 LQRIHCRSETSKGVYCLQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYD 64
Query: 258 EDSSVVISGSQDNTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHLSN 317
E + S V + + I L+ + + + +
Sbjct: 65 ERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSK---DRSIAVWD 121
Query: 318 GLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEA 377
+ R + V+ +V + ++ + + + L
Sbjct: 122 MASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTS----TCEFVRTLNGH 177
Query: 378 RDSITSVHVSDHEILTASLDCRIRRYDIRTGNLVTDYVGEPIVDACFTRDCQCILTCSTD 437
+ I + D +++ S D IR +DI G + G + C D + I++ + D
Sbjct: 178 KRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKRIVSGAYD 237
Query: 438 ECLRLFDKATGELLEEYKGHK-----SGDFRIECCLDSKDSQIFCGSSDGKIYKW 487
++++D G L + QI S D I W
Sbjct: 238 GKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDEFQIVSSSHDDTILIW 292
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 65.3 bits (157), Expect = 3e-12
Identities = 57/300 (19%), Positives = 105/300 (35%), Gaps = 21/300 (7%)
Query: 239 QPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQVRCLNEALKEAR 298
Q + E + V C+++ D ++SG +DNT+ +WD + R L
Sbjct: 6 QRIHCRSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLE----CKRILTGHTGSVL 59
Query: 299 DSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQI 358
++ + + + L +MV S +
Sbjct: 60 CLQYDERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAV 119
Query: 359 GDVTPISIHNSCFQALKEARDSITSVHVSDHEILTASLDCRIRRYDIRTGNLVTDYVGEP 418
D+ + L R ++ V D I++AS D I+ ++ T V G
Sbjct: 120 WDMASPTDITLRRV-LVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHK 178
Query: 419 IVDACFTRDCQCILTCSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCG 478
AC + +++ S+D +RL+D G L +GH + C+ + +I G
Sbjct: 179 RGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGH----EELVRCIRFDNKRIVSG 234
Query: 479 SSDGKIYKWQLVDSSQISTLIHSVGKAV-------VNSLCSHPTRKHIMSACG-NNVKLW 530
+ DGKI W LV + ++ V L I+S+ + + +W
Sbjct: 235 AYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDE--FQIVSSSHDDTILIW 292
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 44.5 bits (103), Expect = 2e-05
Identities = 35/238 (14%), Positives = 74/238 (31%), Gaps = 42/238 (17%)
Query: 168 MHTRFPVDGSYCLTCGSDKKIKLWNP-YRNLLLKTYGGHAHEVNDATAACDSSQIASGAS 226
+ +TC D+ I +W+ + H D I S +
Sbjct: 97 AVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASG 156
Query: 227 DKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQ 286
D+++ +W +T + VR H + C+++ + +V+SGS DNT+ +WD++ + +
Sbjct: 157 DRTIKVWNTSTCEFVRTLNGHKRGIACLQYRDR--LVVSGSSDNTIRLWDIECGACLRVL 214
Query: 287 VRCLNEALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHL 346
+ ++SG +
Sbjct: 215 EGHEE--------------------------------LVRCIRFDNKRIVSGAYDGKIKV 242
Query: 347 MVLLDFLGSTQIGDVTPISIHNSCFQALKEARDSITSVHVSDHEILTASLDCRIRRYD 404
C + L E + + + +I+++S D I +D
Sbjct: 243 W-------DLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDEFQIVSSSHDDTILIWD 293
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.4 bits (95), Expect = 2e-04
Identities = 28/279 (10%), Positives = 86/279 (30%), Gaps = 18/279 (6%)
Query: 175 DGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWE 234
D ++ D IK+W+ + GH V + +
Sbjct: 24 DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVL----CLQYDERVIITGSSDSTVRV 79
Query: 235 VTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQVRCLNEAL 294
+ ++ ++++ S+D ++ +WD+ S + ++ +
Sbjct: 80 WDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRA 139
Query: 295 KEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLG 354
+ + S + + F ++ + + ++
Sbjct: 140 AVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYRDRLVVS-GSSDN 198
Query: 355 STQIGDVTPISIHNSCFQALKEARDSITSVHVSDHEILTASLDCRIRRYDIRTGNLVTDY 414
+ ++ D+ +C + L+ + + + + I++ + D +I+ +D+
Sbjct: 199 TIRLWDIE----CGACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAP 254
Query: 415 VGEPIVDA---------CFTRDCQCILTCSTDECLRLFD 444
G + D I++ S D+ + ++D
Sbjct: 255 AGTLCLRTLVEHSGRVFRLQFDEFQIVSSSHDDTILIWD 293
|
| >d1vhna_ c.1.4.1 (A:) Putative flavin oxidoreducatase TM0096 {Thermotoga maritima [TaxId: 2336]} Length = 305 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Putative flavin oxidoreducatase TM0096 species: Thermotoga maritima [TaxId: 2336]
Score = 68.5 bits (166), Expect = 3e-13
Identities = 25/87 (28%), Positives = 41/87 (47%), Gaps = 1/87 (1%)
Query: 31 FRQLVRSHNVDLCFTPMIIADSFIKSSKARNNEFSTSPEDTPLVVQFASNNHDDFVRATQ 90
FR L D F+ M+ A F+ +S+ + E P + + VQ + ++ A +
Sbjct: 16 FRTLAFEWGADFAFSEMVSAKGFLMNSQ-KTEELLPQPHERNVAVQIFGSEPNELSEAAR 74
Query: 91 YVAPHCNGVDLNCGCPQRWAIKEGYGC 117
++ +DLN GCP R +KEG G
Sbjct: 75 ILSEKYKWIDLNAGCPVRKVVKEGAGG 101
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 66.5 bits (160), Expect = 1e-12
Identities = 39/298 (13%), Positives = 87/298 (29%), Gaps = 25/298 (8%)
Query: 217 DSSQIASGASDKSVILW---EVTTGQPVRRWREHASK-VTCVKF--NEDSSVVISGSQDN 270
++ IA + + + PV ++ H S VT VKF + S + SG +
Sbjct: 28 TTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESG 87
Query: 271 TVMMWDVKSRSHHPIQVRCLNEALKEARDSITSV------------------HSLVKSTK 312
V++W + + I+ + + S
Sbjct: 88 KVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWD 147
Query: 313 NHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQ 372
+ S G ++ +L M+ ++ + G + + H
Sbjct: 148 SGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSF 207
Query: 373 ALKEARDSITSVHVSDHEILTASLDCRIRRYDIRTGNLVTDYVGEPIVDACFTRDCQCIL 432
+ V + + + + A D Q
Sbjct: 208 VRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFA 267
Query: 433 TCSTDECLRLFDKATGELLEEYKGHKSGDFRIE-CCLDSKDSQIFCGSSDGKIYKWQL 489
T D +R++D T + ++++ K + + + + +I S DG + ++L
Sbjct: 268 TVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYEL 325
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 51.8 bits (122), Expect = 7e-08
Identities = 15/65 (23%), Positives = 34/65 (52%), Gaps = 3/65 (4%)
Query: 216 CDSSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFN---EDSSVVISGSQDNTV 272
DS + A+ +D ++ +W+VTT + V++W ++ + + +IS S D T+
Sbjct: 261 LDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTL 320
Query: 273 MMWDV 277
+++
Sbjct: 321 NFYEL 325
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 51.1 bits (120), Expect = 1e-07
Identities = 10/71 (14%), Positives = 30/71 (42%), Gaps = 3/71 (4%)
Query: 168 MHTRFPVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAAC---DSSQIASG 224
+ +D T G+D I++W+ + ++ + ++ + + +I S
Sbjct: 255 IFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISL 314
Query: 225 ASDKSVILWEV 235
+ D ++ +E+
Sbjct: 315 SLDGTLNFYEL 325
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 49.9 bits (117), Expect = 4e-07
Identities = 28/297 (9%), Positives = 75/297 (25%), Gaps = 27/297 (9%)
Query: 175 DGSYCLTCGSD----KKIKLWNPYRNLLLKTYGGHAHEVNDAT--AACDSSQIASGASDK 228
+ + + + +++ G + V S + SG
Sbjct: 28 TTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESG 87
Query: 229 SVILWEVTTGQPVRR--------WREHASKVTCVKFNEDSS--VVISGSQDNTVMMWDVK 278
VI+W T + ++ A ++ + ++ + V+ +DN +
Sbjct: 88 KVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWD 147
Query: 279 SRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGL--- 335
S + + S+ + F+ + +
Sbjct: 148 SGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSF 207
Query: 336 ---LSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEARDSITSVHVSDHEIL 392
+ S + ++ + + + + + +
Sbjct: 208 VRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFA 267
Query: 393 TASLDCRIRRYDIRTGNLVTDYVGEP-----IVDACFTRDCQCILTCSTDECLRLFD 444
T D IR +D+ T V + + I++ S D L ++
Sbjct: 268 TVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYE 324
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 65.0 bits (156), Expect = 3e-12
Identities = 29/294 (9%), Positives = 74/294 (25%), Gaps = 2/294 (0%)
Query: 198 LLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPVRRWRE-HASKVTCVKF 256
+ + GH + +++ D + S ++ + W+++TG R + + HA+ +T +K
Sbjct: 4 IDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKT 63
Query: 257 NEDSSVVISGSQDNTVMMWDVKSR-SHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHL 315
+ D+ ++ S L+ S ++ K+
Sbjct: 64 TSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIA 123
Query: 316 SNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALK 375
LS G +
Sbjct: 124 IYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEIT 183
Query: 376 EARDSITSVHVSDHEILTASLDCRIRRYDIRTGNLVTDYVGEPIVDACFTRDCQCILTCS 435
S + + + + + + ++ D + T S
Sbjct: 184 SVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGS 243
Query: 436 TDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQL 489
D + +++ + + ++ I D I W +
Sbjct: 244 LDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQDSNIKFWNV 297
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 54.2 bits (128), Expect = 1e-08
Identities = 35/301 (11%), Positives = 76/301 (25%), Gaps = 15/301 (4%)
Query: 238 GQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQVRCLNEALKEA 297
G + H +T + + D + S + + WD+ +
Sbjct: 2 GSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTG-------ISNRVFPDVH 54
Query: 298 RDSITSV------HSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLD 351
IT + S +HL N L S L +
Sbjct: 55 ATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIA 114
Query: 352 FLGSTQIGDVTPISIHNSCFQALKEARDSITSVHVSDHEILTASLDCRIRRYDIRTGNLV 411
+ + + + ++++ S + +
Sbjct: 115 VAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVK 174
Query: 412 TDYVGEPIVDACFTRDCQCILTCSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSK 471
T I F+ + ++ + + A L ++ C S
Sbjct: 175 TIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSP 234
Query: 472 -DSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNN-VKL 529
+ ++ GS D + W + S +I + I+SA ++ +K
Sbjct: 235 DNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQDSNIKF 294
Query: 530 W 530
W
Sbjct: 295 W 295
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 47.7 bits (111), Expect = 2e-06
Identities = 18/283 (6%), Positives = 67/283 (23%), Gaps = 14/283 (4%)
Query: 171 RFPVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSV 230
DG + ++ I W+ + + + + + + + D +
Sbjct: 19 SSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHL 78
Query: 231 ILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQVRCL 290
+ ++ + +S D V + ++ +
Sbjct: 79 KVVPAGGSGVDSSKAVA-----NKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEV 133
Query: 291 NEALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLL 350
+ + ++++ V + + + +
Sbjct: 134 PISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAF 193
Query: 351 DFLGSTQIGDVTPISIHNSCFQALKEARDSITSVHVSDH-----EILTASLDCRIRRYDI 405
+ +N V + T SLD + +++
Sbjct: 194 LVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNM 253
Query: 406 RTGNLVTDYVGEP----IVDACFTRDCQCILTCSTDECLRLFD 444
+ + V++ + I++ D ++ ++
Sbjct: 254 NKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQDSNIKFWN 296
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 40.0 bits (91), Expect = 5e-04
Identities = 13/71 (18%), Positives = 24/71 (33%), Gaps = 2/71 (2%)
Query: 168 MHTRFPVDGSYCLTCGSDKKIKLWNP--YRNLLLKTYGGHAHEVNDATAACDSSQIASGA 225
+ D T D + +WN + + G HA ++ + + I S
Sbjct: 228 ACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAG 287
Query: 226 SDKSVILWEVT 236
D ++ W V
Sbjct: 288 QDSNIKFWNVP 298
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 63.7 bits (153), Expect = 2e-11
Identities = 28/340 (8%), Positives = 80/340 (23%), Gaps = 26/340 (7%)
Query: 174 VDGSYCLTCGSDKKIKLWNPYR----NLLLKTYGGHAHEV---------NDATAACDSSQ 220
S+ ++C D +K+W+ N K+Y H+ A +
Sbjct: 22 ACNSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCL 81
Query: 221 IASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDS--SVVISGSQDNTVMMWDVK 278
+A+ + ++ + +T ++ + + S ++ S D + V
Sbjct: 82 VATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVA 141
Query: 279 SRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSG 338
+ + + E+ + ++ S ++ + + +G
Sbjct: 142 TDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERGLIATG 201
Query: 339 ----------VLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEARDSITSVHVSD 388
+ + + +
Sbjct: 202 FNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLY 261
Query: 389 HEILTASLDCRIRRYDIRTGNLVTDYVGEPIVDACFTRDCQCILTCSTDECLRLFDKATG 448
+ +L ++ F + + + D LR +D T
Sbjct: 262 ETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTK 321
Query: 449 ELLEEYKGHKSG-DFRIECCLDSKDSQIFCGSSDGKIYKW 487
E + H + + + +
Sbjct: 322 ERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFL 361
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 62.6 bits (150), Expect = 4e-11
Identities = 36/367 (9%), Positives = 90/367 (24%), Gaps = 57/367 (15%)
Query: 204 GHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQP------VRRWREHASKVTCVKF- 256
H ++ + +S S + D + +W+ H S + V
Sbjct: 12 AHDADIFSV--SACNSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVL 69
Query: 257 ------NEDSSVVISGSQDNTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKS 310
+ +V + S ++ + + ++ + +
Sbjct: 70 QAIERDAFELCLVATTSFSGDLLFYRITR---------------EDETKKVIFEKLDLLD 114
Query: 311 TKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDF--LGSTQIGDVTPISIHN 368
+ + K + + L++ + T ++ F ++ + +P
Sbjct: 115 SDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQ 174
Query: 369 SCFQALKEARDSITSVHVS-DHEILTASLDCRIR--------RYDIRTGNLVTDYVGEPI 419
++ TSV +S I T + ++ I
Sbjct: 175 GTVESPMTPSQFATSVDISERGLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSI 234
Query: 420 VDACFTRDCQCILTCSTD--------------ECLRLFDKATGELLEEYKGHKSGDFRIE 465
F+ + E + T + +
Sbjct: 235 RSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMS 294
Query: 466 CCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLI-HSVG-KAVVNSLCSHPTRKHIMSAC 523
+ + DGK+ W + +I+TL H + + L +
Sbjct: 295 LSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPG 354
Query: 524 GNNVKLW 530
+VK
Sbjct: 355 VFDVKFL 361
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 42.9 bits (99), Expect = 7e-05
Identities = 30/308 (9%), Positives = 79/308 (25%), Gaps = 66/308 (21%)
Query: 171 RFPVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATA---------------A 215
R + T + + R K ++ D+
Sbjct: 74 RDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDR 133
Query: 216 CDSSQIASGASDKSVILWEVTTGQP------------------VRRWREHASKVTCVKFN 257
S ++ + + +W+ V + T V +
Sbjct: 134 LLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDIS 193
Query: 258 EDSSVVISGSQDNTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHLSN 317
E + +G + TV + + ++ E+ ++ S+ S+ S + L
Sbjct: 194 ERGLIA-TGFNNGTVQISE-----LSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLA 247
Query: 318 GLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEA 377
++ + L + +IG ++ + +
Sbjct: 248 -------------------IAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAH 288
Query: 378 RDSITSVHVSDHE--ILTASLDCRIRRYDIRTGNLV------TDYVGEPIVDACFTRDCQ 429
+ S+ +D + +A D ++R +D++T + D +
Sbjct: 289 SSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGD 348
Query: 430 CILTCSTD 437
+
Sbjct: 349 SLAEPGVF 356
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 39.8 bits (91), Expect = 7e-04
Identities = 16/136 (11%), Positives = 34/136 (25%), Gaps = 10/136 (7%)
Query: 147 WSIRVYRPLTVNRELFVLSGLMHTRFPVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHA 206
S + + + F Y G + + H+
Sbjct: 230 NSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHS 289
Query: 207 HEVNDATAACDSSQIASGASDKSVILWEVTTGQPVRRWREHASKV----TCVKFNEDSSV 262
V + + S D + W+V T + + H + + +E
Sbjct: 290 SWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDS 349
Query: 263 VISGSQDNTVMMWDVK 278
+ ++DVK
Sbjct: 350 LAEPG------VFDVK 359
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 38.7 bits (88), Expect = 0.001
Identities = 18/149 (12%), Positives = 42/149 (28%), Gaps = 15/149 (10%)
Query: 369 SCFQALKEARDSITSVHVSDHEILTASLDCRIRRYDIRTGNLVTD--------------- 413
+ A K I SV + ++ S D ++ +D + +
Sbjct: 5 ATANAGKAHDADIFSVSACNSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLH 64
Query: 414 YVGEPIVDACFTRDCQCILTCSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDS 473
+V + + T S L + + ++ K + S +
Sbjct: 65 HVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWA 124
Query: 474 QIFCGSSDGKIYKWQLVDSSQISTLIHSV 502
+ S+D + + + +T I
Sbjct: 125 LKWGASNDRLLSHRLVATDVKGTTYIWKF 153
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 63.0 bits (151), Expect = 3e-11
Identities = 32/346 (9%), Positives = 84/346 (24%), Gaps = 18/346 (5%)
Query: 201 TYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDS 260
T GH V + + + +GA DK + +++ + + + H V +K+
Sbjct: 7 TLRGHMTSVITC-LQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG 65
Query: 261 SVVISGSQDNTVMMWDVK-------------SRSHHPIQVRCLNEALKEARDSITSVHSL 307
+V + + K R ++ + + + +RD+ V L
Sbjct: 66 ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKL 125
Query: 308 VKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQ--HLMVLLDFLGSTQIGDVTPIS 365
K + + + + + + + + D T I
Sbjct: 126 PKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIV 185
Query: 366 IHNSCFQALKEARDSITSVHVSDHEILTASLDCRIRRYDIRTGNLVTDYVGEPIVDACFT 425
+ + L ++ + ++ IR +L + +
Sbjct: 186 WDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTAL 245
Query: 426 RDCQCILTCSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLD-SKDSQIFCGSSDGKI 484
+ + + + + I S+ +
Sbjct: 246 VGLLRLSDKFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGSENQF 305
Query: 485 YKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLW 530
+ L + I + S+ L
Sbjct: 306 NIYNLRSGKLVHANILK-DADQIWSVNFKGKTLVAAVEKDGQSFLE 350
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 61.4 bits (147), Expect = 8e-11
Identities = 49/340 (14%), Positives = 106/340 (31%), Gaps = 24/340 (7%)
Query: 170 TRFPVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKS 229
T + +Y +T DK I++++ L GH V A + SG++D++
Sbjct: 17 TCLQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVW-ALKYAHGGILVSGSTDRT 75
Query: 230 VILWEVTT--GQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQV 287
V +W++ V + + ++ +++GS+DNT+ +W + S P
Sbjct: 76 VRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHG 135
Query: 288 RCLNEALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLM 347
+ L V + Y N L+ + + L
Sbjct: 136 EEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLY 195
Query: 348 VLLDFLGSTQIGDVTP-----------------ISIHNSCFQALKEARDSITSVHVSDHE 390
+L + L+ + + +SD
Sbjct: 196 ILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLSDKF 255
Query: 391 ILTASLDCRIRRYDIRTGNLVTDYVGEPIVDACFTRDCQCILTCSTDECLRLFDKATGEL 450
+++A+ D IR +D + Y + IL ++ +++ +G+L
Sbjct: 256 LVSAAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGSENQFNIYNLRSGKL 315
Query: 451 L-EEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQL 489
+ +I + + DG+ + L
Sbjct: 316 VHANILKDAD---QIWSVNFKGKTLVAAVEKDGQSFLEIL 352
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 61.0 bits (146), Expect = 1e-10
Identities = 40/357 (11%), Positives = 93/357 (26%), Gaps = 31/357 (8%)
Query: 205 HAHEVNDATAACDSSQIASGASDKSVILWEVTTGQP--VRRWREHASKVTCVKFNEDSSV 262
++ D +QIA ++ V ++E + + V +EH +VT V + DS+
Sbjct: 6 LVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNR 65
Query: 263 VISGSQDNTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNH------LS 316
+++ D +W +K R+ P V + + +
Sbjct: 66 IVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFE 125
Query: 317 NGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDV--------------T 362
+ + + +LS L+ +I
Sbjct: 126 QENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWG 185
Query: 363 PISIHNSCFQALKEARDSITSVHVSDHEILTASLD----CRIRRYDIRTGNLVTDYVGEP 418
+ + V S + A + + D + P
Sbjct: 186 SKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLP 245
Query: 419 IVDACFTRDCQCILTCSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCG 478
++ F + ++ D LF + + G + + +
Sbjct: 246 LLAVTFITESS-LVAAGHDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERF--Q 302
Query: 479 SSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACG--NNVKLWTAE 533
+ D K + +H + ++ L + G + +W
Sbjct: 303 NLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVR 359
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 57.6 bits (137), Expect = 1e-09
Identities = 36/341 (10%), Positives = 91/341 (26%), Gaps = 26/341 (7%)
Query: 175 DGSYCLTCGSDKKIKLWNPYRN--LLLKTYGGHAHEVNDATAACDSSQIASGASDKSVIL 232
D + C ++ ++ ++ N + + H +V A DS++I + +D++ +
Sbjct: 18 DRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYV 77
Query: 233 WEVTTGQPVRRWREH--ASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRS--------- 281
W + CV++ + GS + + + +
Sbjct: 78 WTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIK 137
Query: 282 -HHPIQVRCLNEALKEARDSITSVHSLVK--------STKNHLSNGLLTKLVFAFRCKYL 332
V L+ + S + + +K+ F
Sbjct: 138 KPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFES 197
Query: 333 NGLLSGVL-MSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEARDSITSVHVSDHEI 391
+ V + + ++ + + E + +++ +
Sbjct: 198 SSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFITESSL 257
Query: 392 LTASLDCRIRRYDIRTGNLVTDYVGE-PIVDACFTRDCQCILTCSTDECLRLFDKATGEL 450
+ A DC + + + G + R + + +
Sbjct: 258 VAAGHDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAG 317
Query: 451 LEEYKGHKSGDFRIECCLDSKD--SQIFCGSSDGKIYKWQL 489
HK+ +I K SQ DG + W +
Sbjct: 318 AGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDV 358
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 51.4 bits (121), Expect = 1e-07
Identities = 17/116 (14%), Positives = 36/116 (31%), Gaps = 6/116 (5%)
Query: 168 MHTRFPVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASD 227
+ F + S + G D L+ ++GG ++ +++ D
Sbjct: 247 LAVTFITESSL-VAAGHDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLD 305
Query: 228 KSVILWEVTTGQPVRRWREHASKVTCVKFNEDS----SVVISGSQDNTVMMWDVKS 279
K + H + V+ + S + D + +WDV+S
Sbjct: 306 KKASSE-GSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRS 360
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 43.7 bits (101), Expect = 3e-05
Identities = 30/318 (9%), Positives = 75/318 (23%), Gaps = 35/318 (11%)
Query: 247 HASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSV-- 304
++C +N+D + + ++ V +++ + LKE +T V
Sbjct: 6 LVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHE------LKEHNGQVTGVDW 59
Query: 305 ----HSLVKSTKNHL----SNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGST 356
+ +V + + T + + +
Sbjct: 60 APDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVI 119
Query: 357 QIGDVTPISIHNSCFQALKEARDSITSVHVSDHEIL--TASLDCRIRRYDIRTGNLVTDY 414
I + C K R ++ S+ + +L S D + R + +
Sbjct: 120 SICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERP 179
Query: 415 VGEPIVDACFTRDCQCILTCSTDECLRLFDKATGELL-----------------EEYKGH 457
P + + S + A G +
Sbjct: 180 APTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATL 239
Query: 458 KSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRK 517
S + +S + D + ++ + + +S R+
Sbjct: 240 ASETLPLLAVTFITESSLVAAGHDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARE 299
Query: 518 HIMSACGNNVKLWTAEED 535
+ +A
Sbjct: 300 RFQNLDKKASSEGSAAAG 317
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 58.8 bits (140), Expect = 3e-10
Identities = 37/300 (12%), Positives = 86/300 (28%), Gaps = 24/300 (8%)
Query: 198 LLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFN 257
+LKT GH + A + + SG+ D ++ W ++ ++H++ + + +
Sbjct: 5 VLKTISGHNKGIT----ALTVNPLISGSYDGRIMEWSSSSMH-----QDHSNLIVSLDNS 55
Query: 258 EDSSVVISGSQDNTVMMWDVKSRSHHPIQVRCLNEALKEA------RDSITSVHSLVKST 311
+ D + K +V N A I +
Sbjct: 56 KAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIK 115
Query: 312 KNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCF 371
L++ + + + + + + L + + ISI S
Sbjct: 116 SVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSET 175
Query: 372 QALKEARDSITSVHVSDHEILTASLDCRIRRYDIRTGNLVTDYVGEPIVDACFTRDCQCI 431
+ + L + R + + + +
Sbjct: 176 Y-----IAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLV 230
Query: 432 LTCSTDECLRLFDKAT-GELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLV 490
T S D + ++ ++++ HK G + L S + +D I +W +V
Sbjct: 231 ATGSLDTNIFIYSVKRPMKIIKALNAHKDG---VNNLLWETPSTLVSSGADACIKRWNVV 287
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 53.8 bits (127), Expect = 2e-08
Identities = 15/111 (13%), Positives = 37/111 (33%), Gaps = 2/111 (1%)
Query: 168 MHTRFPVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASD 227
+ + S + +R + E + +A+G+ D
Sbjct: 177 IAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLD 236
Query: 228 KSVILWEV-TTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDV 277
++ ++ V + ++ H V + + S++V S D + W+V
Sbjct: 237 TNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPSTLV-SSGADACIKRWNV 286
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 52.3 bits (123), Expect = 5e-08
Identities = 32/296 (10%), Positives = 78/296 (26%), Gaps = 13/296 (4%)
Query: 237 TGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKS-RSHHPIQVRCLNEALK 295
+ ++ H +T + + +ISGS D +M W S H + L
Sbjct: 2 HDEVLKTISGHNKGITALTV----NPLISGSYDGRIMEWSSSSMHQDHSNLIVSL--DNS 55
Query: 296 EARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGS 355
+A++ + + ++ A + L +
Sbjct: 56 KAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIK 115
Query: 356 TQIGDVTPISIHNSCFQALKEARDSITSVHVSDHEILTASLDCRIRRYDIRTGNLVTDYV 415
+ + ++ S + T ++ + R ++
Sbjct: 116 SVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSET 175
Query: 416 GEPIVDACFTRDCQCILTCSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQI 475
D + + F + + + ++ +
Sbjct: 176 YIAAGDVMGKILLYDLQSREVKTSRWAFRTSK-----INAISWKPAEKGANEEEIEEDLV 230
Query: 476 FCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWT 531
GS D I+ + + +I +++ K VN+L + S +K W
Sbjct: 231 ATGSLDTNIFIYSVKRPMKIIKALNA-HKDGVNNLLWETPSTLVSSGADACIKRWN 285
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Score = 59.0 bits (141), Expect = 5e-10
Identities = 10/114 (8%), Positives = 30/114 (26%), Gaps = 3/114 (2%)
Query: 168 MHTRFPVDGSYCLTCGSDKKIKLWNP-YRNLLLKTYGGHAHEVNDATAACDSSQIASGAS 226
RF D T + + + + G
Sbjct: 212 TIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGVL 271
Query: 227 DKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSR 280
+ + +++ + ++ CV F++ + G N + +++ +
Sbjct: 272 N-RLAKYDLKQRKLIKA-ANLDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTL 323
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Score = 49.4 bits (116), Expect = 5e-07
Identities = 29/329 (8%), Positives = 73/329 (22%), Gaps = 43/329 (13%)
Query: 172 FPVDGSYCLTCGSDKKIKLWNPYRNLLLKTY-GGHAHEVNDATAACDSSQI-ASGASDKS 229
Y + + + + + + K+ A A D+
Sbjct: 4 LKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGD 63
Query: 230 VILWEVTTGQPVRR------WREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSR--- 280
+ ++ T + E + + D V + + +
Sbjct: 64 IYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPR 123
Query: 281 -------SHHPIQVRCLNEALKEARDSITSVHSLV---------------KSTKNHLSNG 318
+ ++ + + K T
Sbjct: 124 LEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAGPDIYKMDVKTGKYTVALPLRN 183
Query: 319 LLTKLVFAFRCKYLNGLLSG------VLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQ 372
K A Y S + + D + + + +
Sbjct: 184 WNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTH 243
Query: 373 ALKEARDS---ITSVHVSDHEILTASLDCRIRRYDIRTGNLV-TDYVGEPIVDACFTRDC 428
+ A + T + + R+ +YD++ L+ + F +
Sbjct: 244 TQEFADLTELYFTGLRSPKDPNQIYGVLNRLAKYDLKQRKLIKAANLDHTYYCVAFDKKG 303
Query: 429 QCILTCSTDECLRLFDKATGELLEEYKGH 457
+ T L +F+ T E ++ K
Sbjct: 304 DKLYLGGTFNDLAVFNPDTLEKVKNIKLP 332
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Score = 41.6 bits (96), Expect = 2e-04
Identities = 11/169 (6%), Positives = 35/169 (20%), Gaps = 14/169 (8%)
Query: 82 HDDFVRATQYVAPHCNGVDLNCGCPQRWAIKEGYGCALLSKQRTHPLLFSLPRTITRILY 141
+ W + + + + + +
Sbjct: 171 KTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSP------RHEFSMLYTIARFKDDKQDPA 224
Query: 142 ELPKEWSIRVYRPLTVNRELFVLSGLMHTRFPVDGSYC-----LTCGSDKKIKLWNPYRN 196
+ T + T G G ++ ++ +
Sbjct: 225 TADLLYGYLSVDLKT--GKTHTQEFADLTELYFTGLRSPKDPNQIYGVLNRLAKYDLKQR 282
Query: 197 LLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPVRRWR 245
L+K H ++ G + + ++ T + V+ +
Sbjct: 283 KLIKAAN-LDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIK 330
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 56.4 bits (134), Expect = 3e-09
Identities = 23/275 (8%), Positives = 67/275 (24%), Gaps = 9/275 (3%)
Query: 12 TLLKNLKHCDSTLWTSKLNFRQLVRSHNVDLCFTPMIIADSFIKSSKARNNEFSTSPEDT 71
K ++ + + N + + + T +
Sbjct: 77 KAEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTIS 136
Query: 72 PLVVQFASNNHDDFVRATQYVAPHCNGVDLNCGCPQRWAIKEGYGCALLSKQRTHPLLFS 131
A YV + D+ + + A + L +
Sbjct: 137 DNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENSHDYAPAFDADSKNLYYL 196
Query: 132 LPRTITRILYELPKEWSI-RVYRPLTVNRELFVLSGLMHT---RFPVDGSYCLTCGSDKK 187
R++ + +S V +P + + G Y L +
Sbjct: 197 SYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRS 256
Query: 188 IKLWNPYRNL-LLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPVRRWRE 246
+ + ++ + ++ ++ ++V T + E
Sbjct: 257 SPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKV----TE 312
Query: 247 HASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRS 281
+ +T ++ + D V+ D + + ++
Sbjct: 313 VKNNLTDLRLSADRKTVMVRKDDGKIYTFPLEKPE 347
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 49.5 bits (116), Expect = 6e-07
Identities = 35/352 (9%), Positives = 87/352 (24%), Gaps = 37/352 (10%)
Query: 173 PVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASD--KSV 230
P+DG + S + + + +LK + D+ + +
Sbjct: 12 PLDGDL-IAFVSRGQAFIQDVSGTYVLKV--PEPLRIRYVRRGGDTKVAFIHGTREGDFL 68
Query: 231 ILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPI----- 285
+++ TG+ ++ E+ V + + + + + +M D+++ I
Sbjct: 69 GIYDYRTGK-AEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSRE 127
Query: 286 ----QVRCLNEALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLM 341
+ + A + + + +
Sbjct: 128 AMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENSHDYAPAFD 187
Query: 342 STQHLMVLLDFLGSTQIGDVT---PISIHNSCFQALKEARDSITSVHVSDHEILTAS--- 395
+ + L + D S + S + + + +
Sbjct: 188 ADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEY 247
Query: 396 ----LDCRIRRYDIRTGNLVTDYVGEPIVDA----CFTRDCQCILTCSTDECLRLFDKAT 447
+ R ++ G+ E + L +D T
Sbjct: 248 DLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKT 307
Query: 448 GELLEEYKGHKSGDFRIECCLDSKDSQ-IFCGSSDGKIYKWQLVDSSQISTL 498
++ E S D + + DGKIY + L T+
Sbjct: 308 RKVTEVKNNLTDLRL-------SADRKTVMVRKDDGKIYTFPLEKPEDERTV 352
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 45.6 bits (106), Expect = 8e-06
Identities = 25/308 (8%), Positives = 76/308 (24%), Gaps = 26/308 (8%)
Query: 165 SGLMHTRFPVDGSYCLTCGSD--KKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIA 222
+ + R D G+ + +++ R + + + V +
Sbjct: 43 LRIRYVRRGGDTKVAFIHGTREGDFLGIYDY-RTGKAEKFEENLGNVFAMGVDRNGKFAV 101
Query: 223 SGAS----------DKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTV 272
+ E + + + + G +
Sbjct: 102 VANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAI 161
Query: 273 MMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYL 332
++D++ R ++ +++ L + + + ++ F K
Sbjct: 162 HVYDMEGRKIFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPF 221
Query: 333 NGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHN---------SCFQALKEARDSITS 383
L + L+ + + + L+ + +
Sbjct: 222 VIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSV 281
Query: 384 VHVSD--HEILTASLDCRIRRYDIRTGNLVTDYVGEPIVDACFTRDCQCILTCSTDECLR 441
+ A + +YD++T + V + D + D + ++ D +
Sbjct: 282 PVHGEFAAYYQGAPEKGVLLKYDVKTRKVTE--VKNNLTDLRLSADRKTVMVRKDDGKIY 339
Query: 442 LFDKATGE 449
F E
Sbjct: 340 TFPLEKPE 347
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 42.2 bits (97), Expect = 1e-04
Identities = 5/71 (7%), Positives = 18/71 (25%), Gaps = 4/71 (5%)
Query: 172 FPVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVI 231
+Y + ++ + + + D + D + D +
Sbjct: 284 HGEFAAYYQGAPEKGVLLKYDVKT----RKVTEVKNNLTDLRLSADRKTVMVRKDDGKIY 339
Query: 232 LWEVTTGQPVR 242
+ + + R
Sbjct: 340 TFPLEKPEDER 350
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Score = 55.2 bits (131), Expect = 6e-09
Identities = 27/325 (8%), Positives = 76/325 (23%), Gaps = 38/325 (11%)
Query: 178 YCLTCGSDKKIKLWNPYRNLLLKTY--GGHAHEVNDATAACDSSQI-ASGASDKSVILWE 234
Y L K+ + + + + K A A+ +S++ +
Sbjct: 3 YILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKID 62
Query: 235 VTTGQPVRRWREHA-----SKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQVRC 289
+ TG+ + R + + D + + + + +
Sbjct: 63 LVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDA 122
Query: 290 LNEALKEARDSITSVHSLVKS------------------TKNHLSNGLLTKLVFAFRCKY 331
+ ++A ++ + L + L + A
Sbjct: 123 ETLSRRKAFEAPRQITMLAWARDGSKLYGLGRDLHVMDPEAGTLVEDKPIQSWEAETYAQ 182
Query: 332 LNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCF-----------QALKEARDS 380
+ L + +M + I P + + ++
Sbjct: 183 PDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVF 242
Query: 381 ITSVHVSDHEILTASLDCRIRRYDIRTGNLV-TDYVGEPIVDACFTRDCQCILTCSTDEC 439
S V+ + + +D+ + + + D +
Sbjct: 243 YFSTAVNPAKTRAFGAYNVLESFDLEKNASIKRVPLPHSYYSVNVSTDGSTVWLGGALGD 302
Query: 440 LRLFDKATGELLEEYKGHKSGDFRI 464
L +D T E + + +
Sbjct: 303 LAAYDAETLEKKGQVDLPGNASMSL 327
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Score = 50.6 bits (119), Expect = 2e-07
Identities = 10/112 (8%), Positives = 31/112 (27%), Gaps = 2/112 (1%)
Query: 169 HTRFPVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDK 228
D + + + +V + A + ++ + +
Sbjct: 202 FYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRI-MDVFYFSTAVNPAKTRAFGAYN 260
Query: 229 SVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSR 280
+ +++ ++R V + D S V G + +D ++
Sbjct: 261 VLESFDLEKNASIKRV-PLPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETL 311
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Score = 45.6 bits (106), Expect = 9e-06
Identities = 14/177 (7%), Positives = 38/177 (21%), Gaps = 3/177 (1%)
Query: 71 TPLVVQFASNNHDDFVRATQYVAPHCNGVDLNCGCPQRWAIKEGYGCALLSKQRTHPLLF 130
+ D V + + + F
Sbjct: 143 ARDGSKLYGLGRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPF 202
Query: 131 SLPRTITRILYELPKEWSIRVYRPLTVNRELFVLSGLMHTRFPVDGSYC--LTCGSDKKI 188
R + T + + + F + G+ +
Sbjct: 203 YTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGAYNVL 262
Query: 189 KLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPVRRWR 245
+ ++ +N +K H + D S + G + + ++ T + +
Sbjct: 263 ESFDLEKNASIKRVP-LPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVD 318
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 54.5 bits (129), Expect = 1e-08
Identities = 26/326 (7%), Positives = 85/326 (26%), Gaps = 33/326 (10%)
Query: 198 LLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPVRRWR---EHASKVTCV 254
+++ ++D S + + D S+ +++ + + C
Sbjct: 3 IVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCC 62
Query: 255 KFNEDSS-VVISGSQDNTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVK---- 309
F +++ + G+ ++ D+ +
Sbjct: 63 NFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDG 122
Query: 310 -----STKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPI 364
+N+ + K + + K N + + S++ ++ + + +
Sbjct: 123 LIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCED 182
Query: 365 SIHNSCFQALKEARDSITSVHVSDHEILTASLDCRIRRYDIRTGNLVTDYVGEPIV---- 420
LK + + +S+D R+ +
Sbjct: 183 DNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHR 242
Query: 421 -------------DACFTRDCQCILTCSTDECLRLFDKATGELLEEYKGHKSGDFRIECC 467
F+ + + T +D + ++ T + ++ +
Sbjct: 243 LNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNED---SVVK 299
Query: 468 LDSKDSQIFCGSSDGKIYKWQLVDSS 493
+ D+ + +SD +D +
Sbjct: 300 IACSDNILCLATSDDTFKTNAAIDQT 325
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 49.5 bits (116), Expect = 5e-07
Identities = 24/323 (7%), Positives = 77/323 (23%), Gaps = 32/323 (9%)
Query: 239 QPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRS---------HHPIQVRC 289
Q V+ + ++ +K S+++ S D ++ ++ ++ + + C
Sbjct: 2 QIVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLC 61
Query: 290 LNEALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVL 349
N + + + L + +
Sbjct: 62 CNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWD 121
Query: 350 LDFLGSTQIGDVTPISIHNSCFQALKEARDSITSVHVSDHEILTASLDCRIRRYDIRTGN 409
+ + + ++ I ++ + ++ + +++ + +
Sbjct: 122 GLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCE 181
Query: 410 LVT------DYVGEPIVDACFTRDCQCILTCSTDECLRLFDKATGELL------------ 451
+ A ++ + S D + +
Sbjct: 182 DDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCH 241
Query: 452 -EEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSL 510
K + ++ SDG I W L +I + +
Sbjct: 242 RLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNE---DSVV 298
Query: 511 CSHPTRKHIMSACGNN-VKLWTA 532
+ + A ++ K A
Sbjct: 299 KIACSDNILCLATSDDTFKTNAA 321
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 47.2 bits (110), Expect = 3e-06
Identities = 14/142 (9%), Positives = 44/142 (30%), Gaps = 18/142 (12%)
Query: 168 MHTRFPVDGSYCLTCGSDKKIKLWN---------------PYRNLLLKTYGGHAHEVNDA 212
P + D ++ + + L A+ VN
Sbjct: 198 DVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSI 257
Query: 213 TAACDSSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTV 272
+ + + SD + W + T + ++ + + ++ + VK +++ + D+T
Sbjct: 258 EFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKF-NEDSVVKIACSDNILCLATSDDTF 316
Query: 273 MMWDV--KSRSHHPIQVRCLNE 292
++ + + + +
Sbjct: 317 KTNAAIDQTIELNASSIYIIFD 338
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 39.1 bits (89), Expect = 0.001
Identities = 13/150 (8%), Positives = 38/150 (25%), Gaps = 26/150 (17%)
Query: 168 MHTRFPVDGSYCLTCGSDKKIKLWNPYRNLLLKTY----GGHAHEVNDATAACDSSQIAS 223
+ S + ++ +++ + G + A + A
Sbjct: 152 KIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYAC 211
Query: 224 GASDKSVILWEVTTGQPV---------------RRWREHASKVTCVKFNEDSSVVISGSQ 268
+ D V + + A V ++F+ + +
Sbjct: 212 SSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGS 271
Query: 269 DNTVMMWDVKSR-------SHHPIQVRCLN 291
D + W++++R + V +
Sbjct: 272 DGIISCWNLQTRKKIKNFAKFNEDSVVKIA 301
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Score = 50.4 bits (119), Expect = 3e-07
Identities = 25/281 (8%), Positives = 66/281 (23%), Gaps = 35/281 (12%)
Query: 212 ATAACDSSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKF--------NEDSSVV 263
A A+ ++ A G V +++ T P+ + V + ++
Sbjct: 80 ALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLL 139
Query: 264 ISGSQDNTVMMWDVKSR------------------SHHPIQVRCLNEALKEARDSITSVH 305
+ V + C + +
Sbjct: 140 FFLFGSSAAAGLSVPGASDDQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAA 199
Query: 306 SLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGV---LMSTQHLMVLLDFLGSTQIGDVT 362
+V + N + + + S + + + G+
Sbjct: 200 GIVGAQCTGAQNCSSQAAQANYPGMLVWAVASSILQGDIPAAGATMKAAIDGNE--SGRK 257
Query: 363 PISIHNSCFQALKEARD-SITSVHVSDHEILTASLDCRIRRYDIRTGNLV-TDYVGEPIV 420
+ ++ FQ + + ++ + +H + G G
Sbjct: 258 ADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGHDSD 317
Query: 421 DACFTRDCQCIL--TCSTDECLRLFDKATGELLEEYKGHKS 459
+D + E L ++D A+ + + K
Sbjct: 318 AIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVELDKG 358
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Score = 40.3 bits (93), Expect = 4e-04
Identities = 16/193 (8%), Positives = 39/193 (20%), Gaps = 27/193 (13%)
Query: 110 AIKEGYGCALLSKQRTHPLL-FSLPRTITRILYELPKEWSIRVYRPLTVNRELFVLSGLM 168
+ + C + S P ++ + V T + +
Sbjct: 160 QLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQA--- 216
Query: 169 HTRFPVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDK 228
+ G S + G+ Q+ + +
Sbjct: 217 -AQANYPGMLVWAVASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNT 275
Query: 229 SVI-------------------LWEVTTGQPVRRWREHASKVTCVKFNED--SSVVISGS 267
I + GQ + + +D S + +
Sbjct: 276 DGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPI-SNGHDSDAIIAAQDGASDNYANSA 334
Query: 268 QDNTVMMWDVKSR 280
+ ++D S
Sbjct: 335 GTEVLDIYDAASD 347
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Score = 48.6 bits (114), Expect = 9e-07
Identities = 39/284 (13%), Positives = 76/284 (26%), Gaps = 35/284 (12%)
Query: 212 ATAACDSSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVV-------- 263
A A+ S+IA G V +++ T P + V + +
Sbjct: 62 AHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLL 121
Query: 264 -ISGSQDNTVMMWDVKSRSH-HPIQVRCLNEALKEARDSITSVHS-----LVKSTKNHLS 316
S V + D++ ++ + V A D+ V
Sbjct: 122 FYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTP 181
Query: 317 NGLLTKLVFAFRCKYLNGLLSG-----VLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCF 371
T++ +N ++ T + L S + +
Sbjct: 182 EITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAE 241
Query: 372 QALKEARDSITSVHVS------------DHEILTASLDCRIRRYDIRTGNLV-TDYVGEP 418
+A V E + + D +TG + +G
Sbjct: 242 RADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHE 301
Query: 419 IVDACFTRDCQCIL--TCSTDECLRLFDKATGELLEEYKGHKSG 460
I ++D + +L + D+ L + D +GE L G
Sbjct: 302 IDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQLGHG 345
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Score = 38.2 bits (87), Expect = 0.002
Identities = 9/96 (9%), Positives = 28/96 (29%), Gaps = 3/96 (3%)
Query: 166 GLMHTRFPVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQ--IAS 223
+ + + + + L + HE++ + D A
Sbjct: 260 LDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMG-HEIDSINVSQDEKPLLYAL 318
Query: 224 GASDKSVILWEVTTGQPVRRWREHASKVTCVKFNED 259
DK++ + + +G+ +R + + +
Sbjct: 319 STGDKTLYIHDAESGEELRSVNQLGHGPQVITTADM 354
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Score = 39.9 bits (91), Expect = 5e-04
Identities = 8/68 (11%), Positives = 24/68 (35%), Gaps = 2/68 (2%)
Query: 223 SGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNED-SSVVISGSQDNTVMMWDVKSRS 281
+ + ++ + +VT+ + S + D + V ++ + N V + D + +
Sbjct: 7 ANSESDNISVIDVTSNKVTATI-PVGSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNN 65
Query: 282 HHPIQVRC 289
Sbjct: 66 VIATVPAG 73
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Score = 37.9 bits (87), Expect = 0.002
Identities = 7/56 (12%), Positives = 18/56 (32%), Gaps = 1/56 (1%)
Query: 227 DKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSH 282
+ L + +T + + V + + + +D V M D+ +
Sbjct: 41 AGQIALIDGSTYEIKTVLDTGYA-VHISRLSASGRYLFVIGRDGKVNMIDLWMKEP 95
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 540 | |||
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 100.0 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 100.0 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 100.0 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 100.0 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 100.0 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 100.0 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 100.0 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 100.0 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 100.0 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 100.0 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 100.0 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 100.0 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 100.0 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 100.0 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 100.0 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 100.0 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 100.0 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 100.0 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 100.0 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 100.0 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 99.97 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 99.97 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 99.97 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 99.96 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.96 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.96 | |
| d1vhna_ | 305 | Putative flavin oxidoreducatase TM0096 {Thermotoga | 99.94 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.94 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 99.94 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 99.94 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 99.93 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 99.92 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.92 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 99.91 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 99.91 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.91 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 99.89 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 99.87 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.86 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 99.86 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 99.83 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 99.82 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.81 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.73 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.71 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 99.67 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 99.63 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 99.38 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 99.25 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 99.24 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 99.23 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 99.22 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 99.21 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 99.19 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 99.19 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 99.16 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 99.1 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 99.09 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 99.04 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 99.01 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 99.0 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 98.87 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 98.77 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 98.71 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 98.69 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 98.54 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 98.47 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 98.21 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 98.18 | |
| d1k3ia3 | 387 | Galactose oxidase, central domain {Fungi (Fusarium | 98.17 | |
| d2ad6a1 | 571 | Methanol dehydrogenase, heavy chain {Methylophilus | 97.94 | |
| d1kv9a2 | 560 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 97.93 | |
| d1utca2 | 327 | Clathrin heavy-chain terminal domain {Rat (Rattus | 97.93 | |
| d1kb0a2 | 573 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 97.86 | |
| d2ad6a1 | 571 | Methanol dehydrogenase, heavy chain {Methylophilus | 97.8 | |
| d1w6sa_ | 596 | Methanol dehydrogenase, heavy chain {Methylobacter | 97.78 | |
| d1w6sa_ | 596 | Methanol dehydrogenase, heavy chain {Methylobacter | 97.77 | |
| d1npea_ | 263 | Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | 97.59 | |
| d1k3ia3 | 387 | Galactose oxidase, central domain {Fungi (Fusarium | 97.58 | |
| d1npea_ | 263 | Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | 97.57 | |
| d1flga_ | 582 | Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax | 97.54 | |
| d1qfma1 | 430 | Prolyl oligopeptidase, N-terminal domain {Pig (Sus | 97.32 | |
| d1fwxa2 | 459 | Nitrous oxide reductase, N-terminal domain {Paraco | 97.12 | |
| d1ijqa1 | 266 | Low density lipoprotein (LDL) receptor {Human (Hom | 97.04 | |
| d1ijqa1 | 266 | Low density lipoprotein (LDL) receptor {Human (Hom | 96.94 | |
| d1kv9a2 | 560 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 96.79 | |
| d1fwxa2 | 459 | Nitrous oxide reductase, N-terminal domain {Paraco | 96.61 | |
| d1ep3a_ | 311 | Dihydroorotate dehydrogenase {Lactococcus lactis, | 96.32 | |
| d1kb0a2 | 573 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 96.24 | |
| d1v04a_ | 340 | Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory | 95.88 | |
| d1qfma1 | 430 | Prolyl oligopeptidase, N-terminal domain {Pig (Sus | 95.87 | |
| d1v04a_ | 340 | Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory | 95.84 | |
| d1flga_ | 582 | Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax | 95.72 | |
| d1xipa_ | 381 | Nucleoporin NUP159 {Baker's yeast (Saccharomyces c | 95.48 | |
| d1h6la_ | 353 | Thermostable phytase (3-phytase) {Bacillus amyloli | 95.21 | |
| d1zgka1 | 288 | Kelch-like ECH-associated protein 1, KEAP1 {Human | 94.88 | |
| d1utca2 | 327 | Clathrin heavy-chain terminal domain {Rat (Rattus | 94.86 | |
| d1zgka1 | 288 | Kelch-like ECH-associated protein 1, KEAP1 {Human | 94.38 | |
| d1h6la_ | 353 | Thermostable phytase (3-phytase) {Bacillus amyloli | 94.33 | |
| d1gtea2 | 312 | Dihydropyrimidine dehydrogenase, domain 4 {Pig (Su | 93.34 | |
| d2hu7a1 | 313 | Acylamino-acid-releasing enzyme, N-terminal donain | 93.12 | |
| d1z41a1 | 337 | NADPH dehydrogenase NamA {Bacillus subtilis [TaxId | 92.87 | |
| d2hu7a1 | 313 | Acylamino-acid-releasing enzyme, N-terminal donain | 92.3 | |
| d1ps9a1 | 330 | 2,4-dienoyl-CoA reductase, N-terminal domain {Esch | 90.28 | |
| d1crua_ | 450 | Soluble quinoprotein glucose dehydrogenase {Acinet | 88.86 | |
| d1gwja_ | 374 | Morphinone reductase {Pseudomonas putida [TaxId: 3 | 87.64 | |
| d1icpa_ | 364 | 12-oxophytodienoate reductase (OPR, OYE homolog) { | 86.46 | |
| d1vyra_ | 363 | Pentaerythritol tetranirate reductase {Enterobacte | 86.08 | |
| d1crua_ | 450 | Soluble quinoprotein glucose dehydrogenase {Acinet | 84.73 | |
| d1xipa_ | 381 | Nucleoporin NUP159 {Baker's yeast (Saccharomyces c | 82.59 | |
| d1juba_ | 311 | Dihydroorotate dehydrogenase {Lactococcus lactis, | 80.76 | |
| d1djqa1 | 340 | Trimethylamine dehydrogenase, N-terminal domain {M | 80.15 |
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=3.1e-44 Score=338.53 Aligned_cols=278 Identities=13% Similarity=0.185 Sum_probs=245.5
Q ss_pred eeeeecCeEEEEeCCCCCEEEEeeCCCcEEEEcCCCCee-----EEEeecCCcceeEEEEeeCCCeEEEeeCCCeEEEEE
Q psy18231 160 ELFVLSGLMHTRFPVDGSYCLTCGSDKKIKLWNPYRNLL-----LKTYGGHAHEVNDATAACDSSQIASGASDKSVILWE 234 (540)
Q Consensus 160 ~~~h~~~v~~v~~spdg~~lat~~~dg~i~iwd~~~~~~-----~~~~~~h~~~v~~l~~sp~~~~l~s~s~dg~i~iwd 234 (540)
...|...|.+++|+|+|++||+|+ ||.|+|||+.++.. .....+|.+.|.+++|+|++++|++++.||+|++||
T Consensus 47 ~~~H~~~V~~v~fs~~g~~latg~-dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~dg~~l~s~~~dg~i~iwd 125 (337)
T d1gxra_ 47 TLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWD 125 (337)
T ss_dssp EECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEE
T ss_pred ECCCCCcEEEEEECCCCCEEEEEE-CCEEEEEEccCCcccceeEEeeecCCCCcEEEEEEcCCCCEEEEeeccccccccc
Confidence 446999999999999999999998 89999999876532 233457999999999999999999999999999999
Q ss_pred cCCC--ceeEeccccCCceeEEEECCCCCEEEEecCCCcEEEEEecCCCCCCcchhhhhHhhhhcCCceeEEEEeecccc
Q psy18231 235 VTTG--QPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTK 312 (540)
Q Consensus 235 ~~~~--~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (540)
+... +....+..|...+.+++|+|++.++++++.|+.|++|++.+++.
T Consensus 126 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~~~~~~~~------------------------------ 175 (337)
T d1gxra_ 126 LAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTL------------------------------ 175 (337)
T ss_dssp CCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEE------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccc------------------------------
Confidence 8754 45566788999999999999999999999999999999987641
Q ss_pred cccccCceeeEEEeeeecccccceeeeeeccceeEEEeecccceecccccccccccchhhhhhcccccEEEEEecC--Ce
Q psy18231 313 NHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEARDSITSVHVSD--HE 390 (540)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~--~~ 390 (540)
......|...|.+++|++ ..
T Consensus 176 ----------------------------------------------------------~~~~~~~~~~v~~l~~s~~~~~ 197 (337)
T d1gxra_ 176 ----------------------------------------------------------VRQFQGHTDGASCIDISNDGTK 197 (337)
T ss_dssp ----------------------------------------------------------EEEECCCSSCEEEEEECTTSSE
T ss_pred ----------------------------------------------------------cccccccccccccccccccccc
Confidence 113446788899999988 78
Q ss_pred eEeeeCCCeEEEEeCCCCceEEeeeC-CceEEEEEecCCcEEEeecCCCeEEEEeccccchhhhhccCcCCcceEEEEec
Q psy18231 391 ILTASLDCRIRRYDIRTGNLVTDYVG-EPIVDACFTRDCQCILTCSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLD 469 (540)
Q Consensus 391 l~~~~~dg~i~iwd~~~~~~~~~~~~-~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~s 469 (540)
+++++.|+.+++||+++++.+..+.. ..|.+++|+|++++|++++.|+.+++||+++++.. ....|...|..+ +|+
T Consensus 198 ~~~~~~d~~v~i~d~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~i~d~~~~~~~-~~~~~~~~i~~v--~~s 274 (337)
T d1gxra_ 198 LWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKY-QLHLHESCVLSL--KFA 274 (337)
T ss_dssp EEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEE-EECCCSSCEEEE--EEC
T ss_pred cccccccccccccccccceeecccccccceEEEEEcccccccceeccccccccccccccccc-cccccccccceE--EEC
Confidence 99999999999999999998877764 68999999999999999999999999999888764 456788888877 899
Q ss_pred CCCCeEEEeeCCCcEEEEEecCCcceeEEEecccceeeeEEEEcCCCcEEEeec-CCeeEEEEc
Q psy18231 470 SKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC-GNNVKLWTA 532 (540)
Q Consensus 470 ~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~-d~~i~iw~~ 532 (540)
|++++|++++.||.|++||+.+++.+..+. |...|.+++|+|++++|++++ |++|+|||+
T Consensus 275 ~~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~---~~~~v~~~~~s~d~~~l~t~s~D~~I~vWdl 335 (337)
T d1gxra_ 275 YCGKWFVSTGKDNLLNAWRTPYGASIFQSK---ESSSVLSCDISVDDKYIVTGSGDKKATVYEV 335 (337)
T ss_dssp TTSSEEEEEETTSEEEEEETTTCCEEEEEE---CSSCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred CCCCEEEEEeCCCeEEEEECCCCCEEEEcc---CCCCEEEEEEeCCCCEEEEEeCCCeEEEEEE
Confidence 999999999999999999999999988775 788999999999999999999 999999997
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=7.1e-44 Score=332.24 Aligned_cols=281 Identities=21% Similarity=0.303 Sum_probs=260.2
Q ss_pred eeeeeecCeEEEEeCCCCCEEEEeeCCCcEEEEcCCCCeeEEEeecCCcceeEEEEeeCCCeEEEeeCCCeEEEEEcCCC
Q psy18231 159 RELFVLSGLMHTRFPVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTG 238 (540)
Q Consensus 159 ~~~~h~~~v~~v~~spdg~~lat~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~ 238 (540)
...+|.++|++++|+|++++||||+.||+|+|||+.+++.+.++.+|...|.+++|+|++.++++++.++.+.+|+....
T Consensus 12 ~L~GH~~~I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (317)
T d1vyhc1 12 ALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGF 91 (317)
T ss_dssp EEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSS
T ss_pred EEcCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCcEEEEeeeccccccccccccccccccccccc
Confidence 45679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeEeccccCCceeEEEECCCCCEEEEecCCCcEEEEEecCCCCCCcchhhhhHhhhhcCCceeEEEEeecccccccccC
Q psy18231 239 QPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHLSNG 318 (540)
Q Consensus 239 ~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (540)
+....+..|...+.++.|+++++.+++++.|+.+++||+++++.
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~------------------------------------ 135 (317)
T d1vyhc1 92 ECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYC------------------------------------ 135 (317)
T ss_dssp CEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCE------------------------------------
T ss_pred ccccccccccccceeeeccCCCceEEeeccCcceeEeeccccee------------------------------------
Confidence 99888999999999999999999999999999999999987651
Q ss_pred ceeeEEEeeeecccccceeeeeeccceeEEEeecccceecccccccccccchhhhhhcccccEEEEEecC--CeeEeeeC
Q psy18231 319 LLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEARDSITSVHVSD--HEILTASL 396 (540)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~--~~l~~~~~ 396 (540)
...+..|...+.++++++ .++++++.
T Consensus 136 ----------------------------------------------------~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 163 (317)
T d1vyhc1 136 ----------------------------------------------------VKTFTGHREWVRMVRPNQDGTLIASCSN 163 (317)
T ss_dssp ----------------------------------------------------EEEEECCSSCEEEEEECTTSSEEEEEET
T ss_pred ----------------------------------------------------eeEEccCCCcceeeecccCCCEEEEEeC
Confidence 114456788899999998 88999999
Q ss_pred CCeEEEEeCCCCceEEeeeC--CceEEEEEecCC--------------------cEEEeecCCCeEEEEeccccchhhhh
Q psy18231 397 DCRIRRYDIRTGNLVTDYVG--EPIVDACFTRDC--------------------QCILTCSTDECLRLFDKATGELLEEY 454 (540)
Q Consensus 397 dg~i~iwd~~~~~~~~~~~~--~~i~~~~~sp~~--------------------~~l~~~~~dg~i~i~d~~~~~~~~~~ 454 (540)
|+.|++|++.+++....+.+ ..+.+++|+|++ .++++++.|+.|++||+.+++++.++
T Consensus 164 d~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~ 243 (317)
T d1vyhc1 164 DQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTL 243 (317)
T ss_dssp TSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEE
T ss_pred CCeEEEEeeccceeeEEEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccCCCEEEEEECCCCcEEEEE
Confidence 99999999999998888765 578888887753 46889999999999999999999999
Q ss_pred ccCcCCcceEEEEecCCCCeEEEeeCCCcEEEEEecCCcceeEEEecccceeeeEEEEcCCCcEEEeec-CCeeEEEE
Q psy18231 455 KGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC-GNNVKLWT 531 (540)
Q Consensus 455 ~~~~~~v~~~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~-d~~i~iw~ 531 (540)
.+|...+..+ +++|++++|++|+.||.|++||+.+++++.++. +|.+.|++++|+|++++|++++ ||+|+|||
T Consensus 244 ~~~~~~v~~~--~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~--~h~~~V~~~~~s~~~~~l~s~s~Dg~i~iWd 317 (317)
T d1vyhc1 244 VGHDNWVRGV--LFHSGGKFILSCADDKTLRVWDYKNKRCMKTLN--AHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 317 (317)
T ss_dssp ECCSSCEEEE--EECSSSSCEEEEETTTEEEEECCTTSCCCEEEE--CCSSCEEEEEECSSSSCEEEEETTSEEEEEC
T ss_pred eCCCCCEEEE--EECCCCCEEEEEECCCeEEEEECCCCcEEEEEc--CCCCCEEEEEEcCCCCEEEEEeCCCeEEEeC
Confidence 9999998887 899999999999999999999999999999998 8999999999999999999999 99999997
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=2.4e-43 Score=339.39 Aligned_cols=300 Identities=22% Similarity=0.342 Sum_probs=248.0
Q ss_pred hcccccceeeeecccccc-------eeeeeecCeEEEEeCCCCCEEEEeeCCCcEEEEcCCCCeeEEEee----------
Q psy18231 141 YELPKEWSIRVYRPLTVN-------RELFVLSGLMHTRFPVDGSYCLTCGSDKKIKLWNPYRNLLLKTYG---------- 203 (540)
Q Consensus 141 ~~~~~~~~i~~~~~~~~~-------~~~~h~~~v~~v~~spdg~~lat~~~dg~i~iwd~~~~~~~~~~~---------- 203 (540)
.....+....+|++.... ....|.+.|+|++|||||++||+|+ |++|+|||+.+++.+..+.
T Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~H~~~V~~l~fs~dg~~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~~~~~ 110 (388)
T d1erja_ 32 LKKQTNDYYILYNPALPREIDVELHKSLDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPE 110 (388)
T ss_dssp SEEECSSCEEEECTTSCCCEEEEEEEEEECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC---------
T ss_pred cccCCCCcEEEeCCCCCcceeeeeEeeCCCCCcEEEEEECCCCCEEEEEe-CCeEEEEEecccceEeeeccccccccccc
Confidence 344555566677754321 3346999999999999999999987 8999999999988877664
Q ss_pred --------cCCcceeEEEEeeCCCeEEEeeCCCeEEEEEcCCCceeEeccccCCceeEEEECCCCCEEEEecCCCcEEEE
Q psy18231 204 --------GHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMW 275 (540)
Q Consensus 204 --------~h~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iw 275 (540)
.|...|++++|+|++++|++|+.||.|++||...++.+..+.+|...|.++.|++++..+++++.++.+++|
T Consensus 111 ~~~~~~~~~~~~~V~~l~~s~~~~~l~s~~~dg~v~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~i~~~ 190 (388)
T d1erja_ 111 NLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIW 190 (388)
T ss_dssp --------CCCCBEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred ccccccccCCCCCEEEEEECCCCCcceecccccccccccccccccccccccccccccccccccccccccccccceeeeee
Confidence 456779999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCCCCCCcchhhhhHhhhhcCCceeEEEEeecccccccccCceeeEEEeeeecccccceeeeeeccceeEEEeecccc
Q psy18231 276 DVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGS 355 (540)
Q Consensus 276 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (540)
|..+....
T Consensus 191 d~~~~~~~------------------------------------------------------------------------ 198 (388)
T d1erja_ 191 DLRTGQCS------------------------------------------------------------------------ 198 (388)
T ss_dssp ETTTTEEE------------------------------------------------------------------------
T ss_pred eccccccc------------------------------------------------------------------------
Confidence 98765410
Q ss_pred eecccccccccccchhhhhhcccccEEEEEecC---CeeEeeeCCCeEEEEeCCCCceEEeee---------CCceEEEE
Q psy18231 356 TQIGDVTPISIHNSCFQALKEARDSITSVHVSD---HEILTASLDCRIRRYDIRTGNLVTDYV---------GEPIVDAC 423 (540)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~---------~~~i~~~~ 423 (540)
....+.....++.+.+ .++++++.||.|++||.+++.....+. ...|.+++
T Consensus 199 -----------------~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~ 261 (388)
T d1erja_ 199 -----------------LTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVV 261 (388)
T ss_dssp -----------------EEEECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEE
T ss_pred -----------------cccccccccccccccCCCCCeEEEEcCCCeEEEeecccCccceeeccccccccCCCCCEEEEE
Confidence 0111223344455544 789999999999999999998876653 24799999
Q ss_pred EecCCcEEEeecCCCeEEEEeccccchh------------hhhccCcCCcceEEEEecCCCCeEEEeeCCCcEEEEEecC
Q psy18231 424 FTRDCQCILTCSTDECLRLFDKATGELL------------EEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVD 491 (540)
Q Consensus 424 ~sp~~~~l~~~~~dg~i~i~d~~~~~~~------------~~~~~~~~~v~~~~~~~s~~~~~l~s~s~dg~i~iwd~~~ 491 (540)
|+|++++|++++.||.|++||+.+++.. .....|...+..+ +|+|++++|++|+.||.|++||+.+
T Consensus 262 ~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~s~~~~~l~sg~~dg~i~vwd~~~ 339 (388)
T d1erja_ 262 FTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSV--ATTQNDEYILSGSKDRGVLFWDKKS 339 (388)
T ss_dssp ECTTSSEEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEE--EECGGGCEEEEEETTSEEEEEETTT
T ss_pred ECCCCCEEEEEECCCcEEEEeccCCccccccccccccceeeecccccceEEEE--EECCCCCEEEEEeCCCEEEEEECCC
Confidence 9999999999999999999999876543 2334566777766 8999999999999999999999999
Q ss_pred CcceeEEEecccceeeeEEEE------cCCCcEEEeec-CCeeEEEEccc
Q psy18231 492 SSQISTLIHSVGKAVVNSLCS------HPTRKHIMSAC-GNNVKLWTAEE 534 (540)
Q Consensus 492 ~~~~~~~~~~~~~~~v~~l~~------s~d~~~l~s~~-d~~i~iw~~~~ 534 (540)
++++.++. +|.+.|.++++ +|++++|++|+ ||+|+||++++
T Consensus 340 ~~~~~~l~--~H~~~V~~~~~~~~~~~spd~~~l~s~s~Dg~I~iW~~~k 387 (388)
T d1erja_ 340 GNPLLMLQ--GHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKK 387 (388)
T ss_dssp CCEEEEEE--CCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEEE
T ss_pred CcEEEEEe--CCCCCEEEEEEecCcccCCCCCEEEEEeCCCEEEEEeeee
Confidence 99999999 89999999975 67899999999 99999999864
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=4.1e-42 Score=319.06 Aligned_cols=275 Identities=13% Similarity=0.171 Sum_probs=236.5
Q ss_pred ecCeEEEEeCCCCCEEEEeeCCCcEEEEcCCCCeeEEEeecCCcceeEEEEeeCCCeEEEeeCCCeEEEEEcCCCcee--
Q psy18231 164 LSGLMHTRFPVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPV-- 241 (540)
Q Consensus 164 ~~~v~~v~~spdg~~lat~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~-- 241 (540)
.+.+..++++|+|+.||.++ ++.|.+||+.+++....+.+|...|++++|+|+|++||+|+.||+|+|||+.+++..
T Consensus 17 r~~~~~~a~~~~g~~l~~~~-~~~v~i~~~~~~~~~~~~~~H~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~~~~~ 95 (311)
T d1nr0a1 17 RGTAVVLGNTPAGDKIQYCN-GTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILK 95 (311)
T ss_dssp TTCCCCCEECTTSSEEEEEE-TTEEEEEETTCSSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEE
T ss_pred CCCeEEEEEcCCCCEEEEEe-CCEEEEEECCCCceeEEEcCCCCCEEEEEEeCCCCeEeccccCceEeeeeeeccccccc
Confidence 35567889999999999886 678999999999999999999999999999999999999999999999999987654
Q ss_pred EeccccCCceeEEEECCCCCEEEEecC--CCcEEEEEecCCCCCCcchhhhhHhhhhcCCceeEEEEeecccccccccCc
Q psy18231 242 RRWREHASKVTCVKFNEDSSVVISGSQ--DNTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHLSNGL 319 (540)
Q Consensus 242 ~~~~~h~~~v~~~~~~~~~~~l~s~~~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (540)
..+..|.+.|.+++|+|++++|++++. ++.+++|++++++.
T Consensus 96 ~~~~~~~~~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~~~~~------------------------------------- 138 (311)
T d1nr0a1 96 TTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTS------------------------------------- 138 (311)
T ss_dssp EEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCB-------------------------------------
T ss_pred cccccccCccccccccccccccccccccccccccccccccccc-------------------------------------
Confidence 457789999999999999999999876 45699999987652
Q ss_pred eeeEEEeeeecccccceeeeeeccceeEEEeecccceecccccccccccchhhhhhcccccEEEEEecC--C-eeEeeeC
Q psy18231 320 LTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEARDSITSVHVSD--H-EILTASL 396 (540)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~--~-~l~~~~~ 396 (540)
...+.+|...|.+++|+| + .+++|+.
T Consensus 139 ---------------------------------------------------~~~l~~h~~~v~~v~~~~~~~~~l~sgs~ 167 (311)
T d1nr0a1 139 ---------------------------------------------------NGNLTGQARAMNSVDFKPSRPFRIISGSD 167 (311)
T ss_dssp ---------------------------------------------------CBCCCCCSSCEEEEEECSSSSCEEEEEET
T ss_pred ---------------------------------------------------cccccccccccccccccccceeeeccccc
Confidence 114567889999999998 3 5888999
Q ss_pred CCeEEEEeCCCCceEEeeeC--CceEEEEEecCCcEEEeecCCCeEEEEeccccchhhhh-------ccCcCCcceEEEE
Q psy18231 397 DCRIRRYDIRTGNLVTDYVG--EPIVDACFTRDCQCILTCSTDECLRLFDKATGELLEEY-------KGHKSGDFRIECC 467 (540)
Q Consensus 397 dg~i~iwd~~~~~~~~~~~~--~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~-------~~~~~~v~~~~~~ 467 (540)
|+.|++||+++++....+.. .+|.++.|+|+++++++++.|+.|++||..+++.+..+ .+|...|.++ +
T Consensus 168 d~~i~i~d~~~~~~~~~~~~~~~~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~h~~~V~~~--~ 245 (311)
T d1nr0a1 168 DNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGL--T 245 (311)
T ss_dssp TSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEE--E
T ss_pred ccccccccccccccccccccccccccccccCcccccccccccccccccccccccccccccccccccccccccccccc--c
Confidence 99999999999998888765 57999999999999999999999999999887655443 4678888877 8
Q ss_pred ecCCCCeEEEeeCCCcEEEEEecCCcceeEEEecccc---eeeeEEEEcCCCcEEEeec-CCeeEEEEcc
Q psy18231 468 LDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGK---AVVNSLCSHPTRKHIMSAC-GNNVKLWTAE 533 (540)
Q Consensus 468 ~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~---~~v~~l~~s~d~~~l~s~~-d~~i~iw~~~ 533 (540)
|+|++++|++|+.||+|+|||+++++++.++. .|. ..+.++.| ++.+|++++ ||.|++||++
T Consensus 246 ~s~~~~~l~tgs~Dg~v~iwd~~t~~~~~~l~--~~~~~~~~~~~~~~--~~~~l~s~s~dG~i~~wd~d 311 (311)
T d1nr0a1 246 WSPDGTKIASASADKTIKIWNVATLKVEKTIP--VGTRIEDQQLGIIW--TKQALVSISANGFINFVNPE 311 (311)
T ss_dssp ECTTSSEEEEEETTSEEEEEETTTTEEEEEEE--CCSSGGGCEEEEEE--CSSCEEEEETTCCEEEEETT
T ss_pred cCCCCCEEEEEeCCCeEEEEECCCCcEEEEEE--CCCCccceEEEEEe--cCCEEEEEECCCEEEEEeCC
Confidence 99999999999999999999999999999887 343 23445555 566788988 9999999975
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=8.2e-41 Score=319.21 Aligned_cols=285 Identities=13% Similarity=0.190 Sum_probs=233.9
Q ss_pred eecCeEEEEeCCCCCEEEEeeCCCcEEEEcCCCCe--eEEEeecCCcceeEEEEeeCCCeEEEeeCCCeEEEEEcCCCce
Q psy18231 163 VLSGLMHTRFPVDGSYCLTCGSDKKIKLWNPYRNL--LLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQP 240 (540)
Q Consensus 163 h~~~v~~v~~spdg~~lat~~~dg~i~iwd~~~~~--~~~~~~~h~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~ 240 (540)
+.++|+|++|+|||++||+|+.||.|+|||..+++ .+..+++|.+.|.+++|+|++++|++++.|++|+|||+.++..
T Consensus 6 ~~~pIt~~~~s~dg~~la~~~~~~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~~~ 85 (371)
T d1k8kc_ 6 LVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTW 85 (371)
T ss_dssp CSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEE
T ss_pred CCCCeEEEEECCCCCEEEEEeCCCEEEEEECCCCCEEEEEEecCCCCCEEEEEECCCCCEEEEEECCCeEEEEeeccccc
Confidence 45789999999999999999999999999998775 6777899999999999999999999999999999999987754
Q ss_pred --eEeccccCCceeEEEECCCCCEEEEecCCCcEEEEEecCCCCCCcchhhhhHhhhhcCCceeEEEEeecccccccccC
Q psy18231 241 --VRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHLSNG 318 (540)
Q Consensus 241 --~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (540)
...+.+|...|.+++|+|+++.|++++.|++|++|+++.......
T Consensus 86 ~~~~~~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~--------------------------------- 132 (371)
T d1k8kc_ 86 KPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWV--------------------------------- 132 (371)
T ss_dssp EEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEE---------------------------------
T ss_pred ccccccccccccccccccccccccceeecccCcceeeeeeccccccc---------------------------------
Confidence 445668899999999999999999999999999999887652100
Q ss_pred ceeeEEEeeeecccccceeeeeeccceeEEEeecccceecccccccccccchhhhhhcccccEEEEEecC--CeeEeeeC
Q psy18231 319 LLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEARDSITSVHVSD--HEILTASL 396 (540)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~--~~l~~~~~ 396 (540)
.......|...|.+++|+| .+|++++.
T Consensus 133 ---------------------------------------------------~~~~~~~~~~~v~~v~~~p~~~~l~s~s~ 161 (371)
T d1k8kc_ 133 ---------------------------------------------------CKHIKKPIRSTVLSLDWHPNSVLLAAGSC 161 (371)
T ss_dssp ---------------------------------------------------EEEECTTCCSCEEEEEECTTSSEEEEEET
T ss_pred ---------------------------------------------------ccccccccccccccccccccccceecccc
Confidence 0113456788999999998 78999999
Q ss_pred CCeEEEEeCCCCc------------------eEEeeeC--CceEEEEEecCCcEEEeecCCCeEEEEeccccchhhhhcc
Q psy18231 397 DCRIRRYDIRTGN------------------LVTDYVG--EPIVDACFTRDCQCILTCSTDECLRLFDKATGELLEEYKG 456 (540)
Q Consensus 397 dg~i~iwd~~~~~------------------~~~~~~~--~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~ 456 (540)
|+.+++||..... .+..... ..|.+++|+|++++|++++.|+.|++||+.+++.+..+..
T Consensus 162 D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~ 241 (371)
T d1k8kc_ 162 DFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLAS 241 (371)
T ss_dssp TSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEEC
T ss_pred CcEEEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeecccccccccccCCcceEEeeecccceeeeec
Confidence 9999999986532 2222222 4699999999999999999999999999999999999999
Q ss_pred CcCCcceEEEEecCCCCeEEEeeCCCcEEEEEecCCcceeEEE-------------------------------------
Q psy18231 457 HKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLI------------------------------------- 499 (540)
Q Consensus 457 ~~~~v~~~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~------------------------------------- 499 (540)
|..++.++ +|+|++++|++|+ |+.+++|..........+.
T Consensus 242 ~~~~v~s~--~fs~d~~~la~g~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (371)
T d1k8kc_ 242 ETLPLLAV--TFITESSLVAAGH-DCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGA 318 (371)
T ss_dssp SSCCEEEE--EEEETTEEEEEET-TSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------C
T ss_pred ccccceee--eecCCCCEEEEEc-CCceEEEEeeCCCceEEEeeeecCccccccccccceeeEecccceeEEeccccccc
Confidence 99998877 8999998887665 7777777654322111100
Q ss_pred --ecccceeeeEEEEcCCC----cEEEeec-CCeeEEEEccc
Q psy18231 500 --HSVGKAVVNSLCSHPTR----KHIMSAC-GNNVKLWTAEE 534 (540)
Q Consensus 500 --~~~~~~~v~~l~~s~d~----~~l~s~~-d~~i~iw~~~~ 534 (540)
...|.+.|+++++.+.+ ..++|++ ||.|+|||+++
T Consensus 319 ~~~~~H~~~I~~i~~~~~~~~~~~~~~T~g~Dg~v~iW~~~~ 360 (371)
T d1k8kc_ 319 GLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRS 360 (371)
T ss_dssp CCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHH
T ss_pred eecccccCCEEEEEEeCCCCcceEEEEEEcCCCeEEEEeCCc
Confidence 01388889999998754 3588999 99999999965
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=9.5e-40 Score=307.78 Aligned_cols=279 Identities=17% Similarity=0.321 Sum_probs=238.9
Q ss_pred eeeeecCeEEEEeCCCCCEEEEeeCCCcEEEEcCCCCeeEEEeecCCcceeEEEEeeCCCeEEEeeCCCeEEEEEcCCC-
Q psy18231 160 ELFVLSGLMHTRFPVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTG- 238 (540)
Q Consensus 160 ~~~h~~~v~~v~~spdg~~lat~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~- 238 (540)
..+|.++|++++|+|++++||+|+.||+|+|||+.+++.+..+..|...|.+++|+|+++++++++.|+.+++|+....
T Consensus 51 L~GH~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~~i~~~~~~~~~ 130 (340)
T d1tbga_ 51 LRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTRE 130 (340)
T ss_dssp ECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEEECSCSCEEEEEECTTSSEEEEEETTCCEEEEESSSSC
T ss_pred ECCCCCCEEEEEECCCCCEEEEEECCCceeeeecccceeEEEEecccccEEeeEeeccceeeeeecccceeecccccccc
Confidence 4589999999999999999999999999999999999999999999999999999999999999999999999998664
Q ss_pred ---ceeEeccccCCceeEEEECCCCCEEEEecCCCcEEEEEecCCCCCCcchhhhhHhhhhcCCceeEEEEeeccccccc
Q psy18231 239 ---QPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHL 315 (540)
Q Consensus 239 ---~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (540)
.....+.+|........... +..+.....|.....+.......
T Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~--------------------------------- 176 (340)
T d1tbga_ 131 GNVRVSRELAGHTGYLSCCRFLD-DNQIVTSSGDTTCALWDIETGQQ--------------------------------- 176 (340)
T ss_dssp SCCCEEEEECCCSSCEEEEEEEE-TTEEEEEETTTEEEEEETTTTEE---------------------------------
T ss_pred cccccceeccccccccccccccc-ccccccccccccccccccccccc---------------------------------
Confidence 34455667777777666654 45677777788888887655431
Q ss_pred ccCceeeEEEeeeecccccceeeeeeccceeEEEeecccceecccccccccccchhhhhhcccccEEEEEecC--CeeEe
Q psy18231 316 SNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEARDSITSVHVSD--HEILT 393 (540)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~--~~l~~ 393 (540)
......+...+....+.+ ..+++
T Consensus 177 -------------------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (340)
T d1tbga_ 177 -------------------------------------------------------TTTFTGHTGDVMSLSLAPDTRLFVS 201 (340)
T ss_dssp -------------------------------------------------------EEEEECCSSCEEEEEECTTSSEEEE
T ss_pred -------------------------------------------------------cccccccceeEeeeccccccceeEE
Confidence 001223445566666666 78999
Q ss_pred eeCCCeEEEEeCCCCceEEeeeC--CceEEEEEecCCcEEEeecCCCeEEEEeccccchhhhhc--cCcCCcceEEEEec
Q psy18231 394 ASLDCRIRRYDIRTGNLVTDYVG--EPIVDACFTRDCQCILTCSTDECLRLFDKATGELLEEYK--GHKSGDFRIECCLD 469 (540)
Q Consensus 394 ~~~dg~i~iwd~~~~~~~~~~~~--~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~--~~~~~v~~~~~~~s 469 (540)
++.|+.|++||+++++++..+.+ ..|++++|+|++++|++++.|+.|++||+...+.+..+. .+...+..+ +|+
T Consensus 202 ~~~d~~v~i~d~~~~~~~~~~~~h~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~~~~~~~~~~~~~~~i~~~--~~s 279 (340)
T d1tbga_ 202 GACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSV--SFS 279 (340)
T ss_dssp EETTTEEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEE--EEC
T ss_pred eecCceEEEEECCCCcEEEEEeCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeecccccccccccccccCceEEE--EEC
Confidence 99999999999999999988875 579999999999999999999999999999887766553 344555555 899
Q ss_pred CCCCeEEEeeCCCcEEEEEecCCcceeEEEecccceeeeEEEEcCCCcEEEeec-CCeeEEEE
Q psy18231 470 SKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC-GNNVKLWT 531 (540)
Q Consensus 470 ~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~-d~~i~iw~ 531 (540)
|++++|++|+.||.|++||+.+++++..+. +|.++|++++|+|++++|++|+ ||+|+|||
T Consensus 280 ~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~--~H~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd 340 (340)
T d1tbga_ 280 KSGRLLLAGYDDFNCNVWDALKADRAGVLA--GHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp SSSCEEEEEETTSCEEEEETTTCCEEEEEC--CCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred CCCCEEEEEECCCEEEEEECCCCcEEEEEc--CCCCCEEEEEEeCCCCEEEEEccCCEEEEeC
Confidence 999999999999999999999999999998 8999999999999999999999 99999997
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=1.9e-39 Score=301.05 Aligned_cols=276 Identities=16% Similarity=0.161 Sum_probs=226.1
Q ss_pred ccCCcceeccccchhhhhhcccccceeeeecccccc---eeeeeecCeEEEEeCCCCCEEEEeeCCCcEEEEcCCCCee-
Q psy18231 123 QRTHPLLFSLPRTITRILYELPKEWSIRVYRPLTVN---RELFVLSGLMHTRFPVDGSYCLTCGSDKKIKLWNPYRNLL- 198 (540)
Q Consensus 123 ~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~~~~~~~---~~~~h~~~v~~v~~spdg~~lat~~~dg~i~iwd~~~~~~- 198 (540)
.++.+...+.++....+++. .+..+.+|+..... ...+|.+.|++++|+|+|++||+|+.||+|+|||+.++..
T Consensus 16 ~r~~~~~~a~~~~g~~l~~~--~~~~v~i~~~~~~~~~~~~~~H~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~~~ 93 (311)
T d1nr0a1 16 ARGTAVVLGNTPAGDKIQYC--NGTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHI 93 (311)
T ss_dssp CTTCCCCCEECTTSSEEEEE--ETTEEEEEETTCSSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCC
T ss_pred CCCCeEEEEEcCCCCEEEEE--eCCEEEEEECCCCceeEEEcCCCCCEEEEEEeCCCCeEeccccCceEeeeeeeccccc
Confidence 34444444444444444443 34457888876543 3356999999999999999999999999999999988754
Q ss_pred -EEEeecCCcceeEEEEeeCCCeEEEeeCC--CeEEEEEcCCCceeEeccccCCceeEEEECCCCCE-EEEecCCCcEEE
Q psy18231 199 -LKTYGGHAHEVNDATAACDSSQIASGASD--KSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSV-VISGSQDNTVMM 274 (540)
Q Consensus 199 -~~~~~~h~~~v~~l~~sp~~~~l~s~s~d--g~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~-l~s~~~dg~i~i 274 (540)
...+.+|.+.|.+++|+|++++|++++.+ ..++||++++++....+.+|.+.|.+++|+|++++ |++|+.||.|++
T Consensus 94 ~~~~~~~~~~~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~~~~~~~~l~~h~~~v~~v~~~~~~~~~l~sgs~d~~i~i 173 (311)
T d1nr0a1 94 LKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAI 173 (311)
T ss_dssp EEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEE
T ss_pred cccccccccCccccccccccccccccccccccccccccccccccccccccccccccccccccccceeeeccccccccccc
Confidence 35678899999999999999999999864 56999999999999999999999999999998875 888999999999
Q ss_pred EEecCCCCCCcchhhhhHhhhhcCCceeEEEEeecccccccccCceeeEEEeeeecccccceeeeeeccceeEEEeeccc
Q psy18231 275 WDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLG 354 (540)
Q Consensus 275 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (540)
||+++.+.
T Consensus 174 ~d~~~~~~------------------------------------------------------------------------ 181 (311)
T d1nr0a1 174 FEGPPFKF------------------------------------------------------------------------ 181 (311)
T ss_dssp EETTTBEE------------------------------------------------------------------------
T ss_pred cccccccc------------------------------------------------------------------------
Confidence 99887541
Q ss_pred ceecccccccccccchhhhhhcccccEEEEEecC--CeeEeeeCCCeEEEEeCCCCceEEeeeC---------CceEEEE
Q psy18231 355 STQIGDVTPISIHNSCFQALKEARDSITSVHVSD--HEILTASLDCRIRRYDIRTGNLVTDYVG---------EPIVDAC 423 (540)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~---------~~i~~~~ 423 (540)
......|...|.++.++| +++++++.|+.|++||+.+++....+.. ..|++++
T Consensus 182 ----------------~~~~~~~~~~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~h~~~V~~~~ 245 (311)
T d1nr0a1 182 ----------------KSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLT 245 (311)
T ss_dssp ----------------EEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEE
T ss_pred ----------------ccccccccccccccccCccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 114456788999999998 8899999999999999999888776642 4699999
Q ss_pred EecCCcEEEeecCCCeEEEEeccccchhhhhccCcCC-cceEEEEecCCCCeEEEeeCCCcEEEEEec
Q psy18231 424 FTRDCQCILTCSTDECLRLFDKATGELLEEYKGHKSG-DFRIECCLDSKDSQIFCGSSDGKIYKWQLV 490 (540)
Q Consensus 424 ~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~-v~~~~~~~s~~~~~l~s~s~dg~i~iwd~~ 490 (540)
|+|++++|++|+.||.|+|||++++++++++..|... ...+ .+.+++++|++++.||.|++||.+
T Consensus 246 ~s~~~~~l~tgs~Dg~v~iwd~~t~~~~~~l~~~~~~~~~~~--~~~~~~~~l~s~s~dG~i~~wd~d 311 (311)
T d1nr0a1 246 WSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQL--GIIWTKQALVSISANGFINFVNPE 311 (311)
T ss_dssp ECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEE--EEEECSSCEEEEETTCCEEEEETT
T ss_pred cCCCCCEEEEEeCCCeEEEEECCCCcEEEEEECCCCccceEE--EEEecCCEEEEEECCCEEEEEeCC
Confidence 9999999999999999999999999999988877542 2334 344456689999999999999963
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=4.4e-39 Score=297.80 Aligned_cols=278 Identities=12% Similarity=0.180 Sum_probs=224.3
Q ss_pred eeeeeecCeEEEEeCCCCCEEEEeeCCCcEEEEcCCCCeeEEEee-cCCcceeEEEEeeCCCeEEEeeCCCeEEEEEcCC
Q psy18231 159 RELFVLSGLMHTRFPVDGSYCLTCGSDKKIKLWNPYRNLLLKTYG-GHAHEVNDATAACDSSQIASGASDKSVILWEVTT 237 (540)
Q Consensus 159 ~~~~h~~~v~~v~~spdg~~lat~~~dg~i~iwd~~~~~~~~~~~-~h~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~ 237 (540)
...+|.++|++++|+|||++|++|+.||+|++||+++++.+..+. +|...|++++|+|+++ +++++.|+.+++|+...
T Consensus 7 ~~~GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~~g~-~~~~~~d~~v~~~~~~~ 85 (299)
T d1nr0a2 7 VRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGD-LFTVSWDDHLKVVPAGG 85 (299)
T ss_dssp EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSC-EEEEETTTEEEEECSSS
T ss_pred EcCCCCCCcEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCCcEEEEEeeccce-eecccceeeEEEeccCC
Confidence 356899999999999999999999999999999999999888874 6899999999999986 56677899999999865
Q ss_pred Cce---eEeccccCCceeEEEECCCCCEEEEecCCCcEEEEEecCCCCCCcchhhhhHhhhhcCCceeEEEEeecccccc
Q psy18231 238 GQP---VRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNH 314 (540)
Q Consensus 238 ~~~---~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (540)
... ......+...+.+++|+++++++++++ ++.+.+|+.....
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~-~~~i~~~~~~~~~--------------------------------- 131 (299)
T d1nr0a2 86 SGVDSSKAVANKLSSQPLGLAVSADGDIAVAAC-YKHIAIYSHGKLT--------------------------------- 131 (299)
T ss_dssp SSSCTTSCCEEECSSCEEEEEECTTSSCEEEEE-SSEEEEEETTEEE---------------------------------
T ss_pred ccccccccccccccccccccccccccccccccc-ccccccccccccc---------------------------------
Confidence 432 122345778899999999998777765 5789999843211
Q ss_pred cccCceeeEEEeeeecccccceeeeeeccceeEEEeecccceecccccccccccchhhhhhcccccEEEEEecC--CeeE
Q psy18231 315 LSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEARDSITSVHVSD--HEIL 392 (540)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~--~~l~ 392 (540)
.......+.+++++| +.++
T Consensus 132 -----------------------------------------------------------~~~~~~~~~~~~~s~~~~~l~ 152 (299)
T d1nr0a2 132 -----------------------------------------------------------EVPISYNSSCVALSNDKQFVA 152 (299)
T ss_dssp -----------------------------------------------------------EEECSSCEEEEEECTTSCEEE
T ss_pred -----------------------------------------------------------ccccccccccccccccccccc
Confidence 001123456778887 7899
Q ss_pred eeeCCCeEEEEeCCCCceEEe--e-eCCceEEEEEecCCcEEEeecCCCeEEEEeccccchh---hhhccCcCCcceEEE
Q psy18231 393 TASLDCRIRRYDIRTGNLVTD--Y-VGEPIVDACFTRDCQCILTCSTDECLRLFDKATGELL---EEYKGHKSGDFRIEC 466 (540)
Q Consensus 393 ~~~~dg~i~iwd~~~~~~~~~--~-~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~---~~~~~~~~~v~~~~~ 466 (540)
+++.||.|++||+++++.... . +...|++++|+|++++|++++.|+.|++||+.++..+ ..+.+|...|.++
T Consensus 153 ~g~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~h~~~v~~l-- 230 (299)
T d1nr0a2 153 VGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACV-- 230 (299)
T ss_dssp EEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEE--
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc--
Confidence 999999999999988765432 2 2468999999999999999999999999999876543 4567788888887
Q ss_pred EecCCCCeEEEeeCCCcEEEEEecCCcceeEEEecc-cceeeeEEEEcCCCcEEEeec-CCeeEEEEcc
Q psy18231 467 CLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSV-GKAVVNSLCSHPTRKHIMSAC-GNNVKLWTAE 533 (540)
Q Consensus 467 ~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~-~~~~v~~l~~s~d~~~l~s~~-d~~i~iw~~~ 533 (540)
+|+|++++|++|+.||.|++||+.+++....+.... +...+.++.| +++++|++++ |++|++||++
T Consensus 231 ~~s~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~l~s~s~D~~i~iWdl~ 298 (299)
T d1nr0a2 231 SWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIW-LNETTIVSAGQDSNIKFWNVP 298 (299)
T ss_dssp EECTTSSEEEEEETTSCEEEEETTCTTSCCEEETTSSTTSCEEEEEE-EETTEEEEEETTSCEEEEECC
T ss_pred cccccccceEEEcCCCEEEEEECCCCCcceEEEecCCCCCcEEEEEE-CCCCEEEEEeCCCEEEEEecc
Confidence 899999999999999999999999887655544323 4456777765 5677899999 9999999984
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=4.2e-38 Score=296.25 Aligned_cols=268 Identities=16% Similarity=0.238 Sum_probs=229.8
Q ss_pred Ccceeccccchhhhhhcccccceeeeecccccc--------eeeeeecCeEEEEeCCCCCEEEEeeCCCcEEEEcCCC--
Q psy18231 126 HPLLFSLPRTITRILYELPKEWSIRVYRPLTVN--------RELFVLSGLMHTRFPVDGSYCLTCGSDKKIKLWNPYR-- 195 (540)
Q Consensus 126 ~~~~~s~~~~~~~~~~~~~~~~~i~~~~~~~~~--------~~~~h~~~v~~v~~spdg~~lat~~~dg~i~iwd~~~-- 195 (540)
..+.|+++. ..+++++ ++.|++|+..... ....|.+.|.+++|+|||++|++|+.||+|++||+..
T Consensus 55 ~~v~fs~~g---~~latg~-dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~dg~~l~s~~~dg~i~iwd~~~~~ 130 (337)
T d1gxra_ 55 CAVTISNPT---RHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPT 130 (337)
T ss_dssp CEEEECSSS---SEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC-
T ss_pred EEEEECCCC---CEEEEEE-CCEEEEEEccCCcccceeEEeeecCCCCcEEEEEEcCCCCEEEEeecccccccccccccc
Confidence 345566653 4455655 7889999875432 1235888999999999999999999999999999874
Q ss_pred CeeEEEeecCCcceeEEEEeeCCCeEEEeeCCCeEEEEEcCCCceeEeccccCCceeEEEECCCCCEEEEecCCCcEEEE
Q psy18231 196 NLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMW 275 (540)
Q Consensus 196 ~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iw 275 (540)
.+....+..|...+.+++|+|++.++++++.|+.|++|++.+++.......|...|.+++|++++..+++++.||.|++|
T Consensus 131 ~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~~~~~~~d~~v~i~ 210 (337)
T d1gxra_ 131 PRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSW 210 (337)
T ss_dssp -EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 45667788899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCCCCCCcchhhhhHhhhhcCCceeEEEEeecccccccccCceeeEEEeeeecccccceeeeeeccceeEEEeecccc
Q psy18231 276 DVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGS 355 (540)
Q Consensus 276 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (540)
|+++++. +
T Consensus 211 d~~~~~~--~---------------------------------------------------------------------- 218 (337)
T d1gxra_ 211 DLREGRQ--L---------------------------------------------------------------------- 218 (337)
T ss_dssp ETTTTEE--E----------------------------------------------------------------------
T ss_pred cccccee--e----------------------------------------------------------------------
Confidence 9987651 0
Q ss_pred eecccccccccccchhhhhhcccccEEEEEecC--CeeEeeeCCCeEEEEeCCCCceEEeee-CCceEEEEEecCCcEEE
Q psy18231 356 TQIGDVTPISIHNSCFQALKEARDSITSVHVSD--HEILTASLDCRIRRYDIRTGNLVTDYV-GEPIVDACFTRDCQCIL 432 (540)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~i~~~~~sp~~~~l~ 432 (540)
....|...|.+++|+| +.+++++.|+.+++||+++++...... ...|.+++|+|++++|+
T Consensus 219 -----------------~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~v~~s~~g~~l~ 281 (337)
T d1gxra_ 219 -----------------QQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFV 281 (337)
T ss_dssp -----------------EEEECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEEECCCSSCEEEEEECTTSSEEE
T ss_pred -----------------cccccccceEEEEEcccccccceeccccccccccccccccccccccccccceEEECCCCCEEE
Confidence 1124567899999998 789999999999999999888765443 46899999999999999
Q ss_pred eecCCCeEEEEeccccchhhhhccCcCCcceEEEEecCCCCeEEEeeCCCcEEEEEe
Q psy18231 433 TCSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQL 489 (540)
Q Consensus 433 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~s~~~~~l~s~s~dg~i~iwd~ 489 (540)
+++.||.|++||+.+++.+..+. |...|.++ +|+|++++|++|+.||+|+|||+
T Consensus 282 s~s~Dg~i~iwd~~~~~~~~~~~-~~~~v~~~--~~s~d~~~l~t~s~D~~I~vWdl 335 (337)
T d1gxra_ 282 STGKDNLLNAWRTPYGASIFQSK-ESSSVLSC--DISVDDKYIVTGSGDKKATVYEV 335 (337)
T ss_dssp EEETTSEEEEEETTTCCEEEEEE-CSSCEEEE--EECTTSCEEEEEETTSCEEEEEE
T ss_pred EEeCCCeEEEEECCCCCEEEEcc-CCCCEEEE--EEeCCCCEEEEEeCCCeEEEEEE
Confidence 99999999999999998887765 66778776 89999999999999999999997
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=4.2e-37 Score=289.43 Aligned_cols=323 Identities=20% Similarity=0.332 Sum_probs=244.1
Q ss_pred eeeeeecCeEEEEeCCCCCEEEEeeCCCcEEEEcCCCCeeEEEeecCCcceeEEEEeeCCCeEEEeeCCCeEEEEEcCCC
Q psy18231 159 RELFVLSGLMHTRFPVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTG 238 (540)
Q Consensus 159 ~~~~h~~~v~~v~~spdg~~lat~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~ 238 (540)
...+|.+.|.+ +++++|++||||+.||+|+|||+.+++++.++.+|.+.|.+++|+|+ +|++++.|+++++|+....
T Consensus 11 ~l~GH~~~V~s-~~~~~g~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~~~~--~l~s~s~D~~~~~~~~~~~ 87 (342)
T d2ovrb2 11 VLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDN--IIISGSTDRTLKVWNAETG 87 (342)
T ss_dssp EEECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEETT--EEEEEETTSCEEEEETTTT
T ss_pred EECCcCCceEE-EEEECCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCCEEEEEeCCC--ccccceecccccccccccc
Confidence 35689999865 46778999999999999999999999999999999999999999864 8999999999999999888
Q ss_pred ceeEeccccCCceeEEEECCCCCEEEEecCCCcEEEEEecCCCCCCcchhhhhHhhhhcCCceeEEEEeecccccccccC
Q psy18231 239 QPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHLSNG 318 (540)
Q Consensus 239 ~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (540)
........+...+...... ...+..+..|+.+.+|+..+++...... ...
T Consensus 88 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~d~~i~~~~~~~~~~~~~~~---------------------~~~------- 137 (342)
T d2ovrb2 88 ECIHTLYGHTSTVRCMHLH--EKRVVSGSRDATLRVWDIETGQCLHVLM---------------------GHV------- 137 (342)
T ss_dssp EEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEESSSCCEEEEEE---------------------CCS-------
T ss_pred cceecccccceeEeeeecc--cccccccccceeEEEeecccccceeeee---------------------ccc-------
Confidence 8777776777777766665 4577888899999999998876211110 000
Q ss_pred ceeeEEEeeeecccccceeeeeeccceeEEEeecccceecccccccccccchhhhhhcccccEEEEEecCCeeEeeeCCC
Q psy18231 319 LLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEARDSITSVHVSDHEILTASLDC 398 (540)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~dg 398 (540)
...... ............++.+.+++..... ....+.+|...+..+.+++..+++++.||
T Consensus 138 -~~~~~~------~~~~~~~~~~~~d~~i~~~d~~~~~-------------~~~~~~~~~~~~~~~~~~~~~l~s~~~dg 197 (342)
T d2ovrb2 138 -AAVRCV------QYDGRRVVSGAYDFMVKVWDPETET-------------CLHTLQGHTNRVYSLQFDGIHVVSGSLDT 197 (342)
T ss_dssp -SCEEEE------EECSSCEEEEETTSCEEEEEGGGTE-------------EEEEECCCSSCEEEEEECSSEEEEEETTS
T ss_pred -ccceee------ccccceeeeecCCCeEEEeecccce-------------eeEEEcCcccccccccCCCCEEEEEeCCC
Confidence 000000 0000111222333444444433222 22355678888888999999999999999
Q ss_pred eEEEEeCCCCceEEeeeCCceEEEEEecCCcEEEeecCCCeEEEEeccccchhhhhccCcCCcceEEEEecCCCCeEEEe
Q psy18231 399 RIRRYDIRTGNLVTDYVGEPIVDACFTRDCQCILTCSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCG 478 (540)
Q Consensus 399 ~i~iwd~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~s~~~~~l~s~ 478 (540)
.|++||++.++.+..+.++.....++++++++|++++.|+.|++||+...+....+..+......+. +++++++++++|
T Consensus 198 ~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~s~ 276 (342)
T d2ovrb2 198 SIRVWDVETGNCIHTLTGHQSLTSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVT-CLQFNKNFVITS 276 (342)
T ss_dssp CEEEEETTTCCEEEEECCCCSCEEEEEEETTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEE-EEEECSSEEEEE
T ss_pred eEEEeecccceeeeEecccccceeEEecCCCEEEEEcCCCEEEEEecccccccccccccceeeecee-ecccCCCeeEEE
Confidence 9999999999999888775433334455667999999999999999998887766665443322221 344556799999
Q ss_pred eCCCcEEEEEecCCcceeEEEe---cccceeeeEEEEcCCCcEEEeec-CCe----eEEEEcccc
Q psy18231 479 SSDGKIYKWQLVDSSQISTLIH---SVGKAVVNSLCSHPTRKHIMSAC-GNN----VKLWTAEED 535 (540)
Q Consensus 479 s~dg~i~iwd~~~~~~~~~~~~---~~~~~~v~~l~~s~d~~~l~s~~-d~~----i~iw~~~~~ 535 (540)
+.||+|++||+++++.+..+.. .+|.+.|++++|+|++.+|++|+ ||+ |++||++.+
T Consensus 277 s~Dg~i~iwd~~tg~~i~~~~~~~~~~~~~~v~~v~~s~~~~~la~g~~dGt~~~~l~~~Df~~~ 341 (342)
T d2ovrb2 277 SDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDVD 341 (342)
T ss_dssp ETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECCCC
T ss_pred cCCCEEEEEECCCCCEEEEEecccCCCCCCCEEEEEECCCCCEEEEEeCCCCCeeEEEEEeCCCC
Confidence 9999999999999999888752 35788999999999999999999 885 999999764
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=3.4e-36 Score=284.74 Aligned_cols=302 Identities=18% Similarity=0.300 Sum_probs=232.8
Q ss_pred eeeeeecCe-EEEEeCCCCCEEEEeeCCCcEEEEcCCCCeeEEEeecCCcceeEEEEeeCCCeEEEeeCCCeEEEEEcCC
Q psy18231 159 RELFVLSGL-MHTRFPVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTT 237 (540)
Q Consensus 159 ~~~~h~~~v-~~v~~spdg~~lat~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~ 237 (540)
.+.+|.+.| +|++| ++++||||+.||+|+|||+.+++++.++.+|.+.|++++|+|+ .+|++++.|++|++|++..
T Consensus 7 tL~GH~~~vitc~~~--~~~~l~tgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~l~~s~~-~~l~s~s~D~~i~iw~~~~ 83 (355)
T d1nexb2 7 TLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHG-GILVSGSTDRTVRVWDIKK 83 (355)
T ss_dssp EEECCSSSCEEEEEE--ETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEEETT-TEEEEEETTCCEEEEETTT
T ss_pred EECCcCCCcEEEEEE--CCCEEEEEeCCCeEEEEECCCCcEEEEEECCCCCEEEEEEcCC-CEEEEEecccccccccccc
Confidence 356798886 55554 6889999999999999999999999999999999999999985 5899999999999999998
Q ss_pred CceeEecccc--CCceeEEEECCCCCEEEEecCCCcEEEEEecCCCCCCcchhhhhHhhhhcCCceeEEEEeeccccccc
Q psy18231 238 GQPVRRWREH--ASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHL 315 (540)
Q Consensus 238 ~~~~~~~~~h--~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (540)
.+.......+ ........+.+++.++++++.|+.|++||+.+............ .
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~---------~-------------- 140 (355)
T d1nexb2 84 GCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHD---------Y-------------- 140 (355)
T ss_dssp TEEEEEECCCSSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC-----------C---------C--------------
T ss_pred cccccccccccccccccccccccccceeeeecCCCcEEEEEccCCceeccccccce---------e--------------
Confidence 8877655433 33455667788999999999999999999987652111100000 0
Q ss_pred ccCceeeEEEeeeecccccceeeeeeccceeEEEeecccceecccccccccccchhhhhhcccccEEEEEecCCeeEeee
Q psy18231 316 SNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEARDSITSVHVSDHEILTAS 395 (540)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~ 395 (540)
.... ...............|...+.....+++.++++.
T Consensus 141 ------------------------------~~~~------------~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 178 (355)
T d1nexb2 141 ------------------------------PLVF------------HTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGS 178 (355)
T ss_dssp ------------------------------CEEE------------SCTTTCTTEEEEEECCSSCEEEEEEETTEEEEEE
T ss_pred ------------------------------ccce------------eccccccceeeeeeeccccccccccccceeeeec
Confidence 0000 0000000011123345667777777889999999
Q ss_pred CCCeEEEEeCCCCceEEeeeC--CceEEEEEecCCcEEEeecCCCeEEEEeccccchhhhhccCcCCcceEEEEecCCCC
Q psy18231 396 LDCRIRRYDIRTGNLVTDYVG--EPIVDACFTRDCQCILTCSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDS 473 (540)
Q Consensus 396 ~dg~i~iwd~~~~~~~~~~~~--~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~s~~~~ 473 (540)
.|+.|++||+++++.+....+ ..+.++.++|+++++++++.|+.|++||.+++..+..+++|...|.++ +++ ++
T Consensus 179 ~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~--~~~--~~ 254 (355)
T d1nexb2 179 YDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLL--RLS--DK 254 (355)
T ss_dssp TTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTCCEEEEECCCSSCCCEE--EEC--SS
T ss_pred ccceeeeeecccccceeeeeccccccccccccccceeeecccccceEEeeecccccccccccccccccccc--ccc--cc
Confidence 999999999999998877764 578999999999999999999999999999999999999999999887 565 56
Q ss_pred eEEEeeCCCcEEEEEecCCcceeEEEecccceeeeEE-EEcCCCcEEEeecCCeeEEEEccccc
Q psy18231 474 QIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSL-CSHPTRKHIMSACGNNVKLWTAEEDY 536 (540)
Q Consensus 474 ~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l-~~s~d~~~l~s~~d~~i~iw~~~~~~ 536 (540)
+|++|+.||.|++||+.++...... |...+.++ .+++++++|++++|++|++||++++.
T Consensus 255 ~l~~~~~dg~i~iwd~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~~g~d~~i~vwd~~tg~ 314 (355)
T d1nexb2 255 FLVSAAADGSIRGWDANDYSRKFSY----HHTNLSAITTFYVSDNILVSGSENQFNIYNLRSGK 314 (355)
T ss_dssp EEEEECTTSEEEEEETTTCCEEEEE----ECTTCCCCCEEEECSSEEEEEETTEEEEEETTTCC
T ss_pred eeeeeecccccccccccccceeccc----ccCCceEEEEEcCCCCEEEEEeCCEEEEEECCCCC
Confidence 9999999999999999887654433 44445444 56788888877779999999998753
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=1.5e-36 Score=291.64 Aligned_cols=281 Identities=21% Similarity=0.298 Sum_probs=226.1
Q ss_pred CCcceeccccchhhhhhcccccceeeeeccccccee---------------------eeeecCeEEEEeCCCCCEEEEee
Q psy18231 125 THPLLFSLPRTITRILYELPKEWSIRVYRPLTVNRE---------------------LFVLSGLMHTRFPVDGSYCLTCG 183 (540)
Q Consensus 125 ~~~~~~s~~~~~~~~~~~~~~~~~i~~~~~~~~~~~---------------------~~h~~~v~~v~~spdg~~lat~~ 183 (540)
...+.|+++. .++++++ +++|++|+..+.... ..|...|++++|+|+|++|++|+
T Consensus 65 V~~l~fs~dg---~~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~~l~s~~ 140 (388)
T d1erja_ 65 VCCVKFSNDG---EYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGA 140 (388)
T ss_dssp CCEEEECTTS---SEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEEEE
T ss_pred EEEEEECCCC---CEEEEEe-CCeEEEEEecccceEeeecccccccccccccccccccCCCCCEEEEEECCCCCcceecc
Confidence 3456666653 3455654 789999998764321 23677799999999999999999
Q ss_pred CCCcEEEEcCCCCeeEEEeecCCcceeEEEEeeCCCeEEEeeCCCeEEEEEcCCCceeEeccccCCceeEEEECCCCCEE
Q psy18231 184 SDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVV 263 (540)
Q Consensus 184 ~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l 263 (540)
.||.|++||..+++.+..+.+|...|.+++|++++..+++++.++.+++||..+.........+...+....+.+++++|
T Consensus 141 ~dg~v~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 220 (388)
T d1erja_ 141 EDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYI 220 (388)
T ss_dssp TTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSTTCCEE
T ss_pred cccccccccccccccccccccccccccccccccccccccccccceeeeeeeccccccccccccccccccccccCCCCCeE
Confidence 99999999999999999999999999999999999999999999999999999988877766555555444444588999
Q ss_pred EEecCCCcEEEEEecCCCCCCcchhhhhHhhhhcCCceeEEEEeecccccccccCceeeEEEeeeecccccceeeeeecc
Q psy18231 264 ISGSQDNTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMST 343 (540)
Q Consensus 264 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (540)
++++.||.|++||..++......
T Consensus 221 ~~~~~d~~i~i~~~~~~~~~~~~--------------------------------------------------------- 243 (388)
T d1erja_ 221 AAGSLDRAVRVWDSETGFLVERL--------------------------------------------------------- 243 (388)
T ss_dssp EEEETTSCEEEEETTTCCEEEEE---------------------------------------------------------
T ss_pred EEEcCCCeEEEeecccCccceee---------------------------------------------------------
Confidence 99999999999999877521000
Q ss_pred ceeEEEeecccceecccccccccccchhhhhhcccccEEEEEecC--CeeEeeeCCCeEEEEeCCCCceEEe--------
Q psy18231 344 QHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEARDSITSVHVSD--HEILTASLDCRIRRYDIRTGNLVTD-------- 413 (540)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~-------- 413 (540)
........+|...|.+++|+| .+|++++.||.|++||+++++....
T Consensus 244 ------------------------~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~ 299 (388)
T d1erja_ 244 ------------------------DSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGT 299 (388)
T ss_dssp ------------------------C------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC---------------C
T ss_pred ------------------------ccccccccCCCCCEEEEEECCCCCEEEEEECCCcEEEEeccCCccccccccccccc
Confidence 001113457889999999998 7899999999999999987654321
Q ss_pred ----e--eCCceEEEEEecCCcEEEeecCCCeEEEEeccccchhhhhccCcCCcceEEE----EecCCCCeEEEeeCCCc
Q psy18231 414 ----Y--VGEPIVDACFTRDCQCILTCSTDECLRLFDKATGELLEEYKGHKSGDFRIEC----CLDSKDSQIFCGSSDGK 483 (540)
Q Consensus 414 ----~--~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~----~~s~~~~~l~s~s~dg~ 483 (540)
. +...|.+++|+|++++|++|+.||.|++||+++++++.++++|.+.|..+.+ .|+|++++|++|+.||+
T Consensus 300 ~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~l~~H~~~V~~~~~~~~~~~spd~~~l~s~s~Dg~ 379 (388)
T d1erja_ 300 CEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCK 379 (388)
T ss_dssp EEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSCTTCTTCEEEEEEETTSE
T ss_pred eeeecccccceEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEeCCCCCEEEEEEecCcccCCCCCEEEEEeCCCE
Confidence 1 2357999999999999999999999999999999999999999999988754 36889999999999999
Q ss_pred EEEEEec
Q psy18231 484 IYKWQLV 490 (540)
Q Consensus 484 i~iwd~~ 490 (540)
|+|||++
T Consensus 380 I~iW~~~ 386 (388)
T d1erja_ 380 ARIWKYK 386 (388)
T ss_dssp EEEEEEE
T ss_pred EEEEeee
Confidence 9999985
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=1.3e-36 Score=284.17 Aligned_cols=280 Identities=14% Similarity=0.155 Sum_probs=224.2
Q ss_pred cCeEEEEeCCCCCEEEEeeCCC-cEEEEcCCCC--eeEEEeecC-CcceeEEEEee--CCCeEEEeeCCCeEEEEEcCCC
Q psy18231 165 SGLMHTRFPVDGSYCLTCGSDK-KIKLWNPYRN--LLLKTYGGH-AHEVNDATAAC--DSSQIASGASDKSVILWEVTTG 238 (540)
Q Consensus 165 ~~v~~v~~spdg~~lat~~~dg-~i~iwd~~~~--~~~~~~~~h-~~~v~~l~~sp--~~~~l~s~s~dg~i~iwd~~~~ 238 (540)
+.+++++|+|+|+.||.++.+. .|+.|+.... .....+.+| ...|++++|+| ++.+|++|+.||+|+|||+..+
T Consensus 18 ~~~t~l~~~~~~~~la~~~~~~~~i~~~~~~~~~~~~~~~~~gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~ 97 (325)
T d1pgua1 18 NFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFD 97 (325)
T ss_dssp TCCCCCEEETTTTEEEEEETTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEE
T ss_pred CCeEEEEECCCCCEEEEEeCCCEEEEEEeCCCCCccceEEEeCCCCCCEEEEEEeeCCCCCEEEEEeCCCCEEEeeecCC
Confidence 3467899999999999876544 4667775443 446677777 46899999998 6789999999999999999765
Q ss_pred cee--------EeccccCCceeEEEECCCCCEEEEecC--CCcEEEEEecCCCCCCcchhhhhHhhhhcCCceeEEEEee
Q psy18231 239 QPV--------RRWREHASKVTCVKFNEDSSVVISGSQ--DNTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLV 308 (540)
Q Consensus 239 ~~~--------~~~~~h~~~v~~~~~~~~~~~l~s~~~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (540)
+.. ..+..|.++|.+++|+++++++++++. ++.+++|+.++++.
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~-------------------------- 151 (325)
T d1pgua1 98 KESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNS-------------------------- 151 (325)
T ss_dssp GGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTCCE--------------------------
T ss_pred cceeeeecccccccccccCcEEEEEECCCCCccceeeccccceEEEEeeccccc--------------------------
Confidence 432 224468899999999999999887754 67899999877651
Q ss_pred cccccccccCceeeEEEeeeecccccceeeeeeccceeEEEeecccceecccccccccccchhhhhhcccccEEEEEecC
Q psy18231 309 KSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEARDSITSVHVSD 388 (540)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~ 388 (540)
+..+.+|...|.+++|+|
T Consensus 152 --------------------------------------------------------------~~~~~~h~~~v~~~~~~~ 169 (325)
T d1pgua1 152 --------------------------------------------------------------LGEVSGHSQRINACHLKQ 169 (325)
T ss_dssp --------------------------------------------------------------EEECCSCSSCEEEEEECS
T ss_pred --------------------------------------------------------------ceeeeecccccccccccc
Confidence 124567899999999998
Q ss_pred ---CeeEeeeCCCeEEEEeCCCCceEEeeeC-----CceEEEEEecC-CcEEEeecCCCeEEEEeccccchhhhhccCcC
Q psy18231 389 ---HEILTASLDCRIRRYDIRTGNLVTDYVG-----EPIVDACFTRD-CQCILTCSTDECLRLFDKATGELLEEYKGHKS 459 (540)
Q Consensus 389 ---~~l~~~~~dg~i~iwd~~~~~~~~~~~~-----~~i~~~~~sp~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~ 459 (540)
..+++++.|+.+++||....+....... ..|.+++|+|+ +.+|++++.|+.|++||+++++.+.++.+|..
T Consensus 170 ~~~~~~~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~~~~ 249 (325)
T d1pgua1 170 SRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQE 249 (325)
T ss_dssp SSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTB
T ss_pred cccceEEEeecccccccccccccccceecccccCCCCccEEeeeccccceeccccccccceeeeeecccccccccccccc
Confidence 3577899999999999998877666542 46999999996 68899999999999999999999999999998
Q ss_pred CcceEEEEec-CCCCeEEEeeCCCcEEEEEecCCcceeEEEecccceeeeEEEEcCC-CcEEEeec-CCeeEEEEc
Q psy18231 460 GDFRIECCLD-SKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPT-RKHIMSAC-GNNVKLWTA 532 (540)
Q Consensus 460 ~v~~~~~~~s-~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d-~~~l~s~~-d~~i~iw~~ 532 (540)
.+..+.++.. ++|++|++++.|+.|+|||+++++++..+....|...+..+++.+. +.+|++++ ||+|++||+
T Consensus 250 ~v~~~~~s~~~~dg~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~vwdl 325 (325)
T d1pgua1 250 PVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYEL 325 (325)
T ss_dssp CCCSCEEEEEESSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEET
T ss_pred ccccceeeeeccCCCEEEEEeCCCeEEEEECCCCCEEEEEEecCCcccCeEEEEEECCCCEEEEEECCCEEEEEEC
Confidence 8876643322 7899999999999999999999999998884444444445544433 34788888 999999996
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=3e-36 Score=280.18 Aligned_cols=290 Identities=23% Similarity=0.373 Sum_probs=234.1
Q ss_pred cceeccccchhhhhhcccccceeeeecccccce---eeeeecCeEEEEeCCCCCEEEEeeCCCcEEEEcCCCCeeEEEee
Q psy18231 127 PLLFSLPRTITRILYELPKEWSIRVYRPLTVNR---ELFVLSGLMHTRFPVDGSYCLTCGSDKKIKLWNPYRNLLLKTYG 203 (540)
Q Consensus 127 ~~~~s~~~~~~~~~~~~~~~~~i~~~~~~~~~~---~~~h~~~v~~v~~spdg~~lat~~~dg~i~iwd~~~~~~~~~~~ 203 (540)
.+.|+++ ..++++++.|++|++|+..+... ...|.+.|.+++|+|++.++++++.++.+.+|+....+....+.
T Consensus 22 ~l~~sp~---~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (317)
T d1vyhc1 22 RVIFHPV---FSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMH 98 (317)
T ss_dssp EEEECSS---SSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEECCC
T ss_pred EEEEcCC---CCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCcEEEEeeecccccccccccccccccccccccccccccc
Confidence 3455554 34677889999999999877542 34589999999999999999999999999999999999888899
Q ss_pred cCCcceeEEEEeeCCCeEEEeeCCCeEEEEEcCCCceeEeccccCCceeEEEECCCCCEEEEecCCCcEEEEEecCCCCC
Q psy18231 204 GHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHH 283 (540)
Q Consensus 204 ~h~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~ 283 (540)
+|...+.++.|+|+++.+++++.|+.+++||+++++.+..+.+|...+.+++|+|++++|++++.||.|++|++.+.+..
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~ 178 (317)
T d1vyhc1 99 GHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECK 178 (317)
T ss_dssp CCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEE
T ss_pred cccccceeeeccCCCceEEeeccCcceeEeecccceeeeEEccCCCcceeeecccCCCEEEEEeCCCeEEEEeeccceee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999877521
Q ss_pred CcchhhhhHhhhhcCCceeEEEEeecccccccccCceeeEEEeeeecccccceeeeeeccceeEEEeecccceecccccc
Q psy18231 284 PIQVRCLNEALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTP 363 (540)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (540)
... ......+..+. ..+.
T Consensus 179 ~~~--------~~~~~~i~~~~---~~~~--------------------------------------------------- 196 (317)
T d1vyhc1 179 AEL--------REHRHVVECIS---WAPE--------------------------------------------------- 196 (317)
T ss_dssp EEE--------CCCSSCEEEEE---ECCS---------------------------------------------------
T ss_pred EEE--------ecCCCCceEEE---Eeec---------------------------------------------------
Confidence 100 00000000000 0000
Q ss_pred cccccchhhhhhcccccEEEEEecC-CeeEeeeCCCeEEEEeCCCCceEEeeeC--CceEEEEEecCCcEEEeecCCCeE
Q psy18231 364 ISIHNSCFQALKEARDSITSVHVSD-HEILTASLDCRIRRYDIRTGNLVTDYVG--EPIVDACFTRDCQCILTCSTDECL 440 (540)
Q Consensus 364 ~~~~~~~~~~~~~~~~~v~~l~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~--~~i~~~~~sp~~~~l~~~~~dg~i 440 (540)
. ..................+ ..+++++.|+.|++||+++++++..+.+ ..|.+++|+|++++|++++.||.|
T Consensus 197 ----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i 271 (317)
T d1vyhc1 197 ----S-SYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTL 271 (317)
T ss_dssp ----C-GGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSCEEEEETTTEE
T ss_pred ----c-ccceeeccccceeeeeccCCceeEeccCCCEEEEEECCCCcEEEEEeCCCCCEEEEEECCCCCEEEEEECCCeE
Confidence 0 0001111111122222222 7789999999999999999999988875 579999999999999999999999
Q ss_pred EEEeccccchhhhhccCcCCcceEEEEecCCCCeEEEeeCCCcEEEEE
Q psy18231 441 RLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQ 488 (540)
Q Consensus 441 ~i~d~~~~~~~~~~~~~~~~v~~~~~~~s~~~~~l~s~s~dg~i~iwd 488 (540)
++||+.+++++.++.+|...|+++ +|+|++++|++|+.||+|+|||
T Consensus 272 ~iwd~~~~~~~~~~~~h~~~V~~~--~~s~~~~~l~s~s~Dg~i~iWd 317 (317)
T d1vyhc1 272 RVWDYKNKRCMKTLNAHEHFVTSL--DFHKTAPYVVTGSVDQTVKVWE 317 (317)
T ss_dssp EEECCTTSCCCEEEECCSSCEEEE--EECSSSSCEEEEETTSEEEEEC
T ss_pred EEEECCCCcEEEEEcCCCCCEEEE--EEcCCCCEEEEEeCCCeEEEeC
Confidence 999999999999999999999888 8999999999999999999997
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=2.9e-36 Score=287.51 Aligned_cols=240 Identities=16% Similarity=0.164 Sum_probs=204.3
Q ss_pred CCcceeEEEEeeCCCeEEEeeCCCeEEEEEcCCCc--eeEeccccCCceeEEEECCCCCEEEEecCCCcEEEEEecCCCC
Q psy18231 205 HAHEVNDATAACDSSQIASGASDKSVILWEVTTGQ--PVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSH 282 (540)
Q Consensus 205 h~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~--~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~ 282 (540)
+..+|+|++|+||+++||+|+.||.|+|||+.+++ .+..+++|.++|.+++|+|++++|++++.|++|++||+.++..
T Consensus 6 ~~~pIt~~~~s~dg~~la~~~~~~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~~~ 85 (371)
T d1k8kc_ 6 LVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTW 85 (371)
T ss_dssp CSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEE
T ss_pred CCCCeEEEEECCCCCEEEEEeCCCEEEEEECCCCCEEEEEEecCCCCCEEEEEECCCCCEEEEEECCCeEEEEeeccccc
Confidence 35789999999999999999999999999998775 5667889999999999999999999999999999999986542
Q ss_pred CCcchhhhhHhhhhcCCceeEEEEeecccccccccCceeeEEEeeeecccccceeeeeeccceeEEEeecccceeccccc
Q psy18231 283 HPIQVRCLNEALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVT 362 (540)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (540)
.+.
T Consensus 86 ~~~----------------------------------------------------------------------------- 88 (371)
T d1k8kc_ 86 KPT----------------------------------------------------------------------------- 88 (371)
T ss_dssp EEE-----------------------------------------------------------------------------
T ss_pred ccc-----------------------------------------------------------------------------
Confidence 111
Q ss_pred ccccccchhhhhhcccccEEEEEecC--CeeEeeeCCCeEEEEeCCCCceEEee----e--CCceEEEEEecCCcEEEee
Q psy18231 363 PISIHNSCFQALKEARDSITSVHVSD--HEILTASLDCRIRRYDIRTGNLVTDY----V--GEPIVDACFTRDCQCILTC 434 (540)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~v~~l~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~----~--~~~i~~~~~sp~~~~l~~~ 434 (540)
..+.+|...|.+++|+| +.+++++.|+.+++|+++........ . ...|.+++|+|++++|++|
T Consensus 89 ---------~~~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~ 159 (371)
T d1k8kc_ 89 ---------LVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAG 159 (371)
T ss_dssp ---------EECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEE
T ss_pred ---------cccccccccccccccccccccceeecccCcceeeeeecccccccccccccccccccccccccccccceecc
Confidence 13456788999999998 88999999999999998766543222 1 2579999999999999999
Q ss_pred cCCCeEEEEeccccc------------------hhhhhccCcCCcceEEEEecCCCCeEEEeeCCCcEEEEEecCCccee
Q psy18231 435 STDECLRLFDKATGE------------------LLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQIS 496 (540)
Q Consensus 435 ~~dg~i~i~d~~~~~------------------~~~~~~~~~~~v~~~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~ 496 (540)
+.|+.|++||..... .+.....|...+..+ +|+|++++|++++.|+.|++||+.+++.+.
T Consensus 160 s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~ 237 (371)
T d1k8kc_ 160 SCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGV--CFSANGSRVAWVSHDSTVCLADADKKMAVA 237 (371)
T ss_dssp ETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEE--EECSSSSEEEEEETTTEEEEEEGGGTTEEE
T ss_pred ccCcEEEEEeeccCccccccccccccccccceeeeeeccCccCcEEEE--EeecccccccccccCCcceEEeeeccccee
Confidence 999999999976432 234445677777776 899999999999999999999999999999
Q ss_pred EEEecccceeeeEEEEcCCCcEEEeecCCeeEEEEccc
Q psy18231 497 TLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEE 534 (540)
Q Consensus 497 ~~~~~~~~~~v~~l~~s~d~~~l~s~~d~~i~iw~~~~ 534 (540)
.+. .|..+|.+++|+||+++|++|.|+.+++|..+.
T Consensus 238 ~~~--~~~~~v~s~~fs~d~~~la~g~d~~~~~~~~~~ 273 (371)
T d1k8kc_ 238 TLA--SETLPLLAVTFITESSLVAAGHDCFPVLFTYDS 273 (371)
T ss_dssp EEE--CSSCCEEEEEEEETTEEEEEETTSSCEEEEEET
T ss_pred eee--cccccceeeeecCCCCEEEEEcCCceEEEEeeC
Confidence 998 899999999999999999888788888877654
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=2.1e-35 Score=271.27 Aligned_cols=272 Identities=24% Similarity=0.397 Sum_probs=225.4
Q ss_pred eeeecCeEEEEeCCCCCEEEEeeCCCcEEEEcCCCCeeEEEeecCCcceeEEEEeeCCCeEEEeeCCCeEEEEEcCCCce
Q psy18231 161 LFVLSGLMHTRFPVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQP 240 (540)
Q Consensus 161 ~~h~~~v~~v~~spdg~~lat~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~ 240 (540)
..|...|+|++| ||++||||+.||+|+|||+.+++++.++++|.+.|++++| ++++|++|+.|+.|++|++..+..
T Consensus 12 ~~~~~~V~c~~~--d~~~l~sgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~v~~--~~~~l~s~s~D~~i~~~~~~~~~~ 87 (293)
T d1p22a2 12 SETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEM 87 (293)
T ss_dssp CSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCE
T ss_pred CCCCCCEEEEEE--cCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEeeeec--ccceeecccccccccccccccccc
Confidence 357788998765 7899999999999999999999999999999999999887 678999999999999999999988
Q ss_pred eEeccccCCceeEEEECCCCCEEEEecCCCcEEEEEecCCCCCCcchhhhhHhhhhcCCceeEEEEeecccccccccCce
Q psy18231 241 VRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHLSNGLL 320 (540)
Q Consensus 241 ~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (540)
......+..... .+.+....++++..++.+.+|+.........
T Consensus 88 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------------- 130 (293)
T d1p22a2 88 LNTLIHHCEAVL--HLRFNNGMMVTCSKDRSIAVWDMASPTDITL----------------------------------- 130 (293)
T ss_dssp EEEECCCCSCEE--EEECCTTEEEEEETTSCEEEEECSSSSCCEE-----------------------------------
T ss_pred cccccccccccc--cccccccceeecccccceeEeeccccccccc-----------------------------------
Confidence 776655444433 3445566889999999999999887652110
Q ss_pred eeEEEeeeecccccceeeeeeccceeEEEeecccceecccccccccccchhhhhhcccccEEEEEecCCeeEeeeCCCeE
Q psy18231 321 TKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEARDSITSVHVSDHEILTASLDCRI 400 (540)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~dg~i 400 (540)
...+..|...+..+.+.+..+++++.|+.+
T Consensus 131 --------------------------------------------------~~~~~~~~~~v~~~~~~~~~~~~~s~d~~i 160 (293)
T d1p22a2 131 --------------------------------------------------RRVLVGHRAAVNVVDFDDKYIVSASGDRTI 160 (293)
T ss_dssp --------------------------------------------------EEEECCCSSCEEEEEEETTEEEEEETTSEE
T ss_pred --------------------------------------------------cccccccccccccceecccccccccCCCce
Confidence 113446778888888888999999999999
Q ss_pred EEEeCCCCceEEeeeCCceEEEEEecCCcEEEeecCCCeEEEEeccccchhhhhccCcCCcceEEEEecCCCCeEEEeeC
Q psy18231 401 RRYDIRTGNLVTDYVGEPIVDACFTRDCQCILTCSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSS 480 (540)
Q Consensus 401 ~iwd~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~s~~~~~l~s~s~ 480 (540)
++||+++++.+..+.++......+++++.++++++.||.|++||+++.+.+..+.+|...+. .+++++.+|++|+.
T Consensus 161 ~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~----~~~~~~~~l~sg~~ 236 (293)
T d1p22a2 161 KVWNTSTCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVR----CIRFDNKRIVSGAY 236 (293)
T ss_dssp EEEETTTCCEEEEEECCSSCEEEEEEETTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEE----EEECCSSEEEEEET
T ss_pred eeecCCCCcEEEEEcccccccccccCCCCeEEEecCCCEEEEEecccceeeeeecccceeee----eccccceEEEEEcC
Confidence 99999999999988875444444455677999999999999999999999988888877654 45678889999999
Q ss_pred CCcEEEEEecCC---------cceeEEEecccceeeeEEEEcCCCcEEEeec-CCeeEEEE
Q psy18231 481 DGKIYKWQLVDS---------SQISTLIHSVGKAVVNSLCSHPTRKHIMSAC-GNNVKLWT 531 (540)
Q Consensus 481 dg~i~iwd~~~~---------~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~-d~~i~iw~ 531 (540)
||.|++||+... ..+..+. +|.+.|++++|+ +++|++++ ||+|+|||
T Consensus 237 dg~i~iwd~~~~~~~~~~~~~~~~~~~~--~H~~~V~~v~~d--~~~l~s~s~Dg~i~iWD 293 (293)
T d1p22a2 237 DGKIKVWDLVAALDPRAPAGTLCLRTLV--EHSGRVFRLQFD--EFQIVSSSHDDTILIWD 293 (293)
T ss_dssp TSCEEEEEHHHHTSTTSCTTTTEEEEEC--CCSSCCCCEEEC--SSCEEECCSSSEEEEEC
T ss_pred CCEEEEEECCCCccccccCCceeeEEec--CCCCCEEEEEEc--CCEEEEEecCCEEEEeC
Confidence 999999997542 3456666 899999999995 67899999 99999997
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=1.5e-34 Score=267.12 Aligned_cols=251 Identities=13% Similarity=0.198 Sum_probs=207.0
Q ss_pred CeeEEEeecCCcceeEEEEeeCCCeEEEeeCCCeEEEEEcCCCceeEecc-ccCCceeEEEECCCCCEEEEecCCCcEEE
Q psy18231 196 NLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPVRRWR-EHASKVTCVKFNEDSSVVISGSQDNTVMM 274 (540)
Q Consensus 196 ~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~s~~~dg~i~i 274 (540)
|+..+.+.||.+.|++++|+|++++|+||+.||+|++||+++++.+..+. .|...|.+++|+|++++ ++++.|+.+++
T Consensus 2 g~~~~~~~GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~~g~~-~~~~~d~~v~~ 80 (299)
T d1nr0a2 2 GSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDL-FTVSWDDHLKV 80 (299)
T ss_dssp TEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCE-EEEETTTEEEE
T ss_pred CccceEcCCCCCCcEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCCcEEEEEeecccee-ecccceeeEEE
Confidence 56788999999999999999999999999999999999999999888874 68999999999999875 55667999999
Q ss_pred EEecCCCCCCcchhhhhHhhhhcCCceeEEEEeecccccccccCceeeEEEeeeecccccceeeeeeccceeEEEeeccc
Q psy18231 275 WDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLG 354 (540)
Q Consensus 275 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (540)
|+..........
T Consensus 81 ~~~~~~~~~~~~-------------------------------------------------------------------- 92 (299)
T d1nr0a2 81 VPAGGSGVDSSK-------------------------------------------------------------------- 92 (299)
T ss_dssp ECSSSSSSCTTS--------------------------------------------------------------------
T ss_pred eccCCccccccc--------------------------------------------------------------------
Confidence 998654321110
Q ss_pred ceecccccccccccchhhhhhcccccEEEEEecC-CeeEeeeCCCeEEEEeCCCCceEEeeeCCceEEEEEecCCcEEEe
Q psy18231 355 STQIGDVTPISIHNSCFQALKEARDSITSVHVSD-HEILTASLDCRIRRYDIRTGNLVTDYVGEPIVDACFTRDCQCILT 433 (540)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~i~~~~~sp~~~~l~~ 433 (540)
.....+...+.++++++ ..+++++.++.+++|+.. +.......+.+.+++|+|++++|++
T Consensus 93 -----------------~~~~~~~~~~~~~~~s~~g~~~~~~~~~~i~~~~~~--~~~~~~~~~~~~~~~~s~~~~~l~~ 153 (299)
T d1nr0a2 93 -----------------AVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHG--KLTEVPISYNSSCVALSNDKQFVAV 153 (299)
T ss_dssp -----------------CCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETT--EEEEEECSSCEEEEEECTTSCEEEE
T ss_pred -----------------cccccccccccccccccccccccccccccccccccc--ccccccccccccccccccccccccc
Confidence 02234566788899988 556666777899999854 3444455678999999999999999
Q ss_pred ecCCCeEEEEeccccchhh-hhccCcCCcceEEEEecCCCCeEEEeeCCCcEEEEEecCCcceeEEE-ecccceeeeEEE
Q psy18231 434 CSTDECLRLFDKATGELLE-EYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLI-HSVGKAVVNSLC 511 (540)
Q Consensus 434 ~~~dg~i~i~d~~~~~~~~-~~~~~~~~v~~~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~~~~v~~l~ 511 (540)
++.|+.|++||+++++... ....|...|.++ +|+|++++|++++.|+.|++||+.++....... ...|...|++++
T Consensus 154 g~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~--~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~h~~~v~~l~ 231 (299)
T d1nr0a2 154 GGQDSKVHVYKLSGASVSEVKTIVHPAEITSV--AFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVS 231 (299)
T ss_dssp EETTSEEEEEEEETTEEEEEEEEECSSCEEEE--EECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEE
T ss_pred cccccccccccccccccccccccccccccccc--cccccccccccccccccccccccccccccccccccccccccccccc
Confidence 9999999999998776543 345688888877 899999999999999999999998876654332 227899999999
Q ss_pred EcCCCcEEEeec-CCeeEEEEccccc
Q psy18231 512 SHPTRKHIMSAC-GNNVKLWTAEEDY 536 (540)
Q Consensus 512 ~s~d~~~l~s~~-d~~i~iw~~~~~~ 536 (540)
|+|++++|++++ |+.|++||++++.
T Consensus 232 ~s~~~~~l~sgs~dg~i~iwd~~~~~ 257 (299)
T d1nr0a2 232 WSPDNVRLATGSLDNSVIVWNMNKPS 257 (299)
T ss_dssp ECTTSSEEEEEETTSCEEEEETTCTT
T ss_pred ccccccceEEEcCCCEEEEEECCCCC
Confidence 999999999999 9999999998653
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=1.4e-34 Score=270.32 Aligned_cols=278 Identities=15% Similarity=0.200 Sum_probs=215.8
Q ss_pred Ccceeccccchhhhhhcccccceeeeecccccc-----eeeee-ecCeEEEEeCC--CCCEEEEeeCCCcEEEEcCCCCe
Q psy18231 126 HPLLFSLPRTITRILYELPKEWSIRVYRPLTVN-----RELFV-LSGLMHTRFPV--DGSYCLTCGSDKKIKLWNPYRNL 197 (540)
Q Consensus 126 ~~~~~s~~~~~~~~~~~~~~~~~i~~~~~~~~~-----~~~~h-~~~v~~v~~sp--dg~~lat~~~dg~i~iwd~~~~~ 197 (540)
.+...++++....+++..+....++.|+..... ...+| ...|++++|+| +|++||+|+.||+|+|||+..++
T Consensus 19 ~~t~l~~~~~~~~la~~~~~~~~i~~~~~~~~~~~~~~~~~gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~ 98 (325)
T d1pgua1 19 FTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDK 98 (325)
T ss_dssp CCCCCEEETTTTEEEEEETTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEG
T ss_pred CeEEEEECCCCCEEEEEeCCCEEEEEEeCCCCCccceEEEeCCCCCCEEEEEEeeCCCCCEEEEEeCCCCEEEeeecCCc
Confidence 333444444445555555555667888764432 22345 46799999998 67899999999999999986543
Q ss_pred e--------EEEeecCCcceeEEEEeeCCCeEEEeeC--CCeEEEEEcCCCceeEeccccCCceeEEEECCCCCE-EEEe
Q psy18231 198 L--------LKTYGGHAHEVNDATAACDSSQIASGAS--DKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSV-VISG 266 (540)
Q Consensus 198 ~--------~~~~~~h~~~v~~l~~sp~~~~l~s~s~--dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~-l~s~ 266 (540)
. ...+..|.++|.+++|++++++|++++. ++.+++|++++++.+..+.+|...|.+++|+|++.+ ++++
T Consensus 99 ~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~ 178 (325)
T d1pgua1 99 ESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTV 178 (325)
T ss_dssp GGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTCCEEEECCSCSSCEEEEEECSSSSCEEEEE
T ss_pred ceeeeecccccccccccCcEEEEEECCCCCccceeeccccceEEEEeecccccceeeeecccccccccccccccceEEEe
Confidence 2 2345678899999999999999987764 678999999999999999999999999999998764 7789
Q ss_pred cCCCcEEEEEecCCCCCCcchhhhhHhhhhcCCceeEEEEeecccccccccCceeeEEEeeeecccccceeeeeecccee
Q psy18231 267 SQDNTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHL 346 (540)
Q Consensus 267 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (540)
+.||.+++||....+...
T Consensus 179 ~~d~~v~~~d~~~~~~~~-------------------------------------------------------------- 196 (325)
T d1pgua1 179 GDDGSVVFYQGPPFKFSA-------------------------------------------------------------- 196 (325)
T ss_dssp ETTTEEEEEETTTBEEEE--------------------------------------------------------------
T ss_pred ecccccccccccccccce--------------------------------------------------------------
Confidence 999999999986544100
Q ss_pred EEEeecccceecccccccccccchhhhhhcccccEEEEEecC---CeeEeeeCCCeEEEEeCCCCceEEeeeC--CceEE
Q psy18231 347 MVLLDFLGSTQIGDVTPISIHNSCFQALKEARDSITSVHVSD---HEILTASLDCRIRRYDIRTGNLVTDYVG--EPIVD 421 (540)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~~--~~i~~ 421 (540)
.......|...|.+++|+| .++++++.|+.|++||+++++.+..+.+ .++..
T Consensus 197 -----------------------~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~~~~~v~~ 253 (325)
T d1pgua1 197 -----------------------SDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQG 253 (325)
T ss_dssp -----------------------EECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCS
T ss_pred -----------------------ecccccCCCCccEEeeeccccceeccccccccceeeeeecccccccccccccccccc
Confidence 0113456788899999997 6789999999999999999999988875 24444
Q ss_pred EEEe---cCCcEEEeecCCCeEEEEeccccchhhhhccCcCCcc--eEEEEecCCCCeEEEeeCCCcEEEEEe
Q psy18231 422 ACFT---RDCQCILTCSTDECLRLFDKATGELLEEYKGHKSGDF--RIECCLDSKDSQIFCGSSDGKIYKWQL 489 (540)
Q Consensus 422 ~~~s---p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~--~~~~~~s~~~~~l~s~s~dg~i~iwd~ 489 (540)
+.|+ |++++|++++.|+.|+|||+++++++..+..|...+. .+.+.+.+ +.+|++++.||.|++||+
T Consensus 254 ~~~s~~~~dg~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~s~s~dg~i~vwdl 325 (325)
T d1pgua1 254 GIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATG-NGRIISLSLDGTLNFYEL 325 (325)
T ss_dssp CEEEEEESSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEE-TTEEEEEETTSCEEEEET
T ss_pred ceeeeeccCCCEEEEEeCCCeEEEEECCCCCEEEEEEecCCcccCeEEEEEECC-CCEEEEEECCCEEEEEEC
Confidence 4444 6899999999999999999999999988877766544 34434443 347999999999999995
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=6.2e-34 Score=269.06 Aligned_cols=295 Identities=18% Similarity=0.293 Sum_probs=229.2
Q ss_pred hhhhcccccceeeeecccccce---eeeeecCeEEEEeCCCCCEEEEeeCCCcEEEEcCCCCeeEEEeecC--CcceeEE
Q psy18231 138 RILYELPKEWSIRVYRPLTVNR---ELFVLSGLMHTRFPVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGH--AHEVNDA 212 (540)
Q Consensus 138 ~~~~~~~~~~~i~~~~~~~~~~---~~~h~~~v~~v~~spdg~~lat~~~dg~i~iwd~~~~~~~~~~~~h--~~~v~~l 212 (540)
.++++++.|++|++|+..+... ..+|.++|++++|+|++ +|++|+.|++|++|+....+.......+ .......
T Consensus 24 ~~l~tgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~l~~s~~~-~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~~~~~~~ 102 (355)
T d1nexb2 24 NYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDI 102 (355)
T ss_dssp TEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEEETTT-EEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEE
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEEECCCCCEEEEEEcCCC-EEEEEeccccccccccccccccccccccccccccccc
Confidence 4677889999999999887553 34599999999999865 8999999999999999998877766543 3445566
Q ss_pred EEeeCCCeEEEeeCCCeEEEEEcCCCceeEec-----------------------cccCCceeEEEECCCCCEEEEecCC
Q psy18231 213 TAACDSSQIASGASDKSVILWEVTTGQPVRRW-----------------------REHASKVTCVKFNEDSSVVISGSQD 269 (540)
Q Consensus 213 ~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~-----------------------~~h~~~v~~~~~~~~~~~l~s~~~d 269 (540)
.+++++.++++++.|+.|++||+.+....... ..|...+. .+.+++++++++..|
T Consensus 103 ~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~--~~~~~~~~~~~~~~d 180 (355)
T d1nexb2 103 VEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVR--TVSGHGNIVVSGSYD 180 (355)
T ss_dssp EEETTEEEEEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTEEEEEECCSSCEE--EEEEETTEEEEEETT
T ss_pred ccccccceeeeecCCCcEEEEEccCCceeccccccceeccceeccccccceeeeeeecccccc--ccccccceeeeeccc
Confidence 77889999999999999999999876433221 12333343 344567899999999
Q ss_pred CcEEEEEecCCCCCCcchhhhhHhhhhcCCceeEEEEeecccccccccCceeeEEEeeeecccccceeeeeeccceeEEE
Q psy18231 270 NTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVL 349 (540)
Q Consensus 270 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (540)
+.|++||+++++.
T Consensus 181 ~~i~~~d~~~~~~------------------------------------------------------------------- 193 (355)
T d1nexb2 181 NTLIVWDVAQMKC------------------------------------------------------------------- 193 (355)
T ss_dssp SCEEEEETTTTEE-------------------------------------------------------------------
T ss_pred ceeeeeecccccc-------------------------------------------------------------------
Confidence 9999999987641
Q ss_pred eecccceecccccccccccchhhhhhcccccEEEEEecC--CeeEeeeCCCeEEEEeCCCCceEEeeeC--CceEEEEEe
Q psy18231 350 LDFLGSTQIGDVTPISIHNSCFQALKEARDSITSVHVSD--HEILTASLDCRIRRYDIRTGNLVTDYVG--EPIVDACFT 425 (540)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~--~~i~~~~~s 425 (540)
+.....+...+.++.+++ ..+++++.|+.|++||++++..+..+.+ ..|.+++++
T Consensus 194 ---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~~ 252 (355)
T d1nexb2 194 ---------------------LYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLS 252 (355)
T ss_dssp ---------------------EEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTCCEEEEECCCSSCCCEEEEC
T ss_pred ---------------------eeeeeccccccccccccccceeeecccccceEEeeeccccccccccccccccccccccc
Confidence 112334566777888887 8899999999999999999999988876 468888875
Q ss_pred cCCcEEEeecCCCeEEEEeccccchhhhhccCcCCcceEEEEecCCCCeEEEeeCCCcEEEEEecCCcceeE-EEecccc
Q psy18231 426 RDCQCILTCSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQIST-LIHSVGK 504 (540)
Q Consensus 426 p~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~-~~~~~~~ 504 (540)
+++|++++.||.|++||+.++.. .+..|...+..+. ++++++++|++| .||.|++||+++++++.. +. +|.
T Consensus 253 --~~~l~~~~~dg~i~iwd~~~~~~--~~~~~~~~~~~~~-~~~~~~~~l~~g-~d~~i~vwd~~tg~~~~~~~~--~~~ 324 (355)
T d1nexb2 253 --DKFLVSAAADGSIRGWDANDYSR--KFSYHHTNLSAIT-TFYVSDNILVSG-SENQFNIYNLRSGKLVHANIL--KDA 324 (355)
T ss_dssp --SSEEEEECTTSEEEEEETTTCCE--EEEEECTTCCCCC-EEEECSSEEEEE-ETTEEEEEETTTCCBCCSCTT--TTC
T ss_pred --cceeeeeecccccccccccccce--ecccccCCceEEE-EEcCCCCEEEEE-eCCEEEEEECCCCCEEEEEec--CCC
Confidence 57999999999999999987754 4556666666653 467777776666 589999999999998854 44 799
Q ss_pred eeeeEEEEcCCCcEEEeec-CCeeEEEEc
Q psy18231 505 AVVNSLCSHPTRKHIMSAC-GNNVKLWTA 532 (540)
Q Consensus 505 ~~v~~l~~s~d~~~l~s~~-d~~i~iw~~ 532 (540)
+.|.+++|+|+ .++++++ ||+++||.+
T Consensus 325 ~~V~~v~~~~~-~~~~~~s~dg~~~l~~~ 352 (355)
T d1nexb2 325 DQIWSVNFKGK-TLVAAVEKDGQSFLEIL 352 (355)
T ss_dssp SEEEEEEEETT-EEEEEEESSSCEEEEEE
T ss_pred CCEEEEEEcCC-eEEEEEECCCcEEEEEE
Confidence 99999999987 4677778 998777654
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=2.9e-33 Score=263.01 Aligned_cols=254 Identities=20% Similarity=0.308 Sum_probs=220.0
Q ss_pred CeeEEEeecCCcceeEEEEeeCCCeEEEeeCCCeEEEEEcCCCceeEeccccCCceeEEEECCCCCEEEEecCCCcEEEE
Q psy18231 196 NLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMW 275 (540)
Q Consensus 196 ~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iw 275 (540)
.+..++|+||.+.|++++|+|++++||||+.||+|+|||+.+++.+..+..|...|.+++|+|+++++++++.|+.+.+|
T Consensus 45 ~~~~~tL~GH~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~~i~~~ 124 (340)
T d1tbga_ 45 MRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIY 124 (340)
T ss_dssp CCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEEECSCSCEEEEEECTTSSEEEEEETTCCEEEE
T ss_pred eeeeEEECCCCCCEEEEEECCCCCEEEEEECCCceeeeecccceeEEEEecccccEEeeEeeccceeeeeecccceeecc
Confidence 34667899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCCCCCCcchhhhhHhhhhcCCceeEEEEeecccccccccCceeeEEEeeeecccccceeeeeeccceeEEEeecccc
Q psy18231 276 DVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGS 355 (540)
Q Consensus 276 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (540)
+..........
T Consensus 125 ~~~~~~~~~~~--------------------------------------------------------------------- 135 (340)
T d1tbga_ 125 NLKTREGNVRV--------------------------------------------------------------------- 135 (340)
T ss_dssp ESSSSCSCCCE---------------------------------------------------------------------
T ss_pred ccccccccccc---------------------------------------------------------------------
Confidence 98765421111
Q ss_pred eecccccccccccchhhhhhcccccEEEEEecC-CeeEeeeCCCeEEEEeCCCCceEEeeeC--CceEEEEEecCCcEEE
Q psy18231 356 TQIGDVTPISIHNSCFQALKEARDSITSVHVSD-HEILTASLDCRIRRYDIRTGNLVTDYVG--EPIVDACFTRDCQCIL 432 (540)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~--~~i~~~~~sp~~~~l~ 432 (540)
...+.+|........... ..+.....|.....++............ ..+....+.+.+.+++
T Consensus 136 ---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (340)
T d1tbga_ 136 ---------------SRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFV 200 (340)
T ss_dssp ---------------EEEECCCSSCEEEEEEEETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSEEE
T ss_pred ---------------ceecccccccccccccccccccccccccccccccccccccccccccccceeEeeeccccccceeE
Confidence 012334445555554444 7788888899999999887766555543 6789999999999999
Q ss_pred eecCCCeEEEEeccccchhhhhccCcCCcceEEEEecCCCCeEEEeeCCCcEEEEEecCCcceeEEEecccceeeeEEEE
Q psy18231 433 TCSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCS 512 (540)
Q Consensus 433 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~ 512 (540)
+++.|+.|++||+++++.+.++.+|...|.++ +|+|++++|++|+.||.|++||+...+.+..+....+...|.+++|
T Consensus 201 ~~~~d~~v~i~d~~~~~~~~~~~~h~~~i~~v--~~~p~~~~l~s~s~d~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 278 (340)
T d1tbga_ 201 SGACDASAKLWDVREGMCRQTFTGHESDINAI--CFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSF 278 (340)
T ss_dssp EEETTTEEEEEETTTTEEEEEECCCSSCEEEE--EECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEE
T ss_pred EeecCceEEEEECCCCcEEEEEeCCCCCeEEE--EECCCCCEEEEEeCCCeEEEEeecccccccccccccccCceEEEEE
Confidence 99999999999999999999999999999888 8999999999999999999999999988888876677888999999
Q ss_pred cCCCcEEEeec-CCeeEEEEcccc
Q psy18231 513 HPTRKHIMSAC-GNNVKLWTAEED 535 (540)
Q Consensus 513 s~d~~~l~s~~-d~~i~iw~~~~~ 535 (540)
+|++++|++|+ ||.|++||+.++
T Consensus 279 s~~~~~l~~g~~dg~i~iwd~~~~ 302 (340)
T d1tbga_ 279 SKSGRLLLAGYDDFNCNVWDALKA 302 (340)
T ss_dssp CSSSCEEEEEETTSCEEEEETTTC
T ss_pred CCCCCEEEEEECCCEEEEEECCCC
Confidence 99999999999 999999998764
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=3.6e-33 Score=256.11 Aligned_cols=262 Identities=13% Similarity=0.133 Sum_probs=207.8
Q ss_pred eeeeeecCeEEEEeCCCCCEEEEeeCCCcEEEEcCCCCeeEEEeecCCcceeEEEEeeCCCeEEEeeCCCeEEEEEcCCC
Q psy18231 159 RELFVLSGLMHTRFPVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTG 238 (540)
Q Consensus 159 ~~~~h~~~v~~v~~spdg~~lat~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~ 238 (540)
...+|.++|++++|+| |+||+.||+|++||+.++. .+|...|.+++++++ ..+++++.|+++++|++...
T Consensus 8 ~l~gH~~~I~~l~~s~----l~sgs~Dg~v~~Wd~~~~~-----~~h~~~V~~~~~~~~-~~~~s~s~D~~v~~w~~~~~ 77 (287)
T d1pgua2 8 TISGHNKGITALTVNP----LISGSYDGRIMEWSSSSMH-----QDHSNLIVSLDNSKA-QEYSSISWDDTLKVNGITKH 77 (287)
T ss_dssp EECCCSSCEEEEETTT----TEEEETTSCEEETTTTEEE-----CCCCSCEEEEECCST-TCCEEEETTTEEEETTEEEE
T ss_pred EECCCCCceEEEEECc----EEEEeCCCeEEEEECCCCC-----CCCCCCEEEEEecCC-CeEEEEeecccccccccccc
Confidence 3458999999999998 9999999999999987643 579999999999865 56899999999999997543
Q ss_pred ceeEeccccCCceeEEEECCCCCEEEEecCCCcEEEEEecCCCCCCcchhhhhHhhhhcCCceeEEEEeecccccccccC
Q psy18231 239 QPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHLSNG 318 (540)
Q Consensus 239 ~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (540)
+ ....+..+.+++++..+++++ ++.+.+|+..+++.. .
T Consensus 78 ~-------~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~--~-------------------------------- 115 (287)
T d1pgua2 78 E-------FGSQPKVASANNDGFTAVLTN-DDDLLILQSFTGDII--K-------------------------------- 115 (287)
T ss_dssp E-------CSSCEEEEEECSSSEEEEEET-TSEEEEEETTTCCEE--E--------------------------------
T ss_pred c-------cccceeeeeeccCCceEEEee-cccceeeeccceeee--e--------------------------------
Confidence 2 345678889999887777665 567888987766510 0
Q ss_pred ceeeEEEeeeecccccceeeeeeccceeEEEeecccceecccccccccccchhhhhhcccccEEEEEecCCeeEeeeCCC
Q psy18231 319 LLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEARDSITSVHVSDHEILTASLDC 398 (540)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~dg 398 (540)
.+ .+...+.++..+++.+++++.++
T Consensus 116 ------------------------------------------------------~~-~~~~~~~~~~~~~~~~~v~~~~~ 140 (287)
T d1pgua2 116 ------------------------------------------------------SV-RLNSPGSAVSLSQNYVAVGLEEG 140 (287)
T ss_dssp ------------------------------------------------------EE-ECSSCEEEEEECSSEEEEEETTT
T ss_pred ------------------------------------------------------ec-cccceeeeeeccCcceeeecccc
Confidence 00 12234456666677777777765
Q ss_pred -eEEEEeCCCCceEEeee---CCceEEEEEecCCcEEEeecCCCeEEEEeccccchhh-hhccCcCCcceEEEEecC---
Q psy18231 399 -RIRRYDIRTGNLVTDYV---GEPIVDACFTRDCQCILTCSTDECLRLFDKATGELLE-EYKGHKSGDFRIECCLDS--- 470 (540)
Q Consensus 399 -~i~iwd~~~~~~~~~~~---~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~-~~~~~~~~v~~~~~~~s~--- 470 (540)
.+++|++...+....+. ...+++++|+|++++|++|+.||.|++||+.+++.+. .+.+|...|.++ +|+|
T Consensus 141 ~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~--~~~p~~~ 218 (287)
T d1pgua2 141 NTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAI--SWKPAEK 218 (287)
T ss_dssp SCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEE--EECCCC-
T ss_pred ceeeeeeccccceeeeeeeccCCceeEEEeccCccccccccccccccceeeccccccccccccccccccee--eeccccc
Confidence 79999998776655553 2579999999999999999999999999999887653 567899988887 6665
Q ss_pred -------CCCeEEEeeCCCcEEEEEecCC-cceeEEEecccceeeeEEEEcCCCcEEEeec-CCeeEEEEc
Q psy18231 471 -------KDSQIFCGSSDGKIYKWQLVDS-SQISTLIHSVGKAVVNSLCSHPTRKHIMSAC-GNNVKLWTA 532 (540)
Q Consensus 471 -------~~~~l~s~s~dg~i~iwd~~~~-~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~-d~~i~iw~~ 532 (540)
++.+|++|+.|++|++||++++ +.+..+. +|...|++++|+|++. |++++ |+.|++|++
T Consensus 219 ~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~~~~~~~~--~h~~~V~~v~~~~~~~-l~s~g~D~~v~iW~i 286 (287)
T d1pgua2 219 GANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALN--AHKDGVNNLLWETPST-LVSSGADACIKRWNV 286 (287)
T ss_dssp -----CCSCCEEEEEETTSCEEEEESSCTTCCEEETT--SSTTCEEEEEEEETTE-EEEEETTSCEEEEEE
T ss_pred ccccccCCCCeeEeecCCCeEEEEECCCCCeEEEEeC--CCCCCeEEEEECCCCE-EEEEECCCeEEEEEE
Confidence 4578999999999999999774 4455555 8999999999999875 67777 999999996
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=3e-33 Score=268.69 Aligned_cols=288 Identities=13% Similarity=0.194 Sum_probs=208.7
Q ss_pred eeeeeecCeEEEEeCCCCCEEEEeeCCCcEEEEcCCCCe------eEEEeecCCcceeEEEEe---e----CCCeEEEee
Q psy18231 159 RELFVLSGLMHTRFPVDGSYCLTCGSDKKIKLWNPYRNL------LLKTYGGHAHEVNDATAA---C----DSSQIASGA 225 (540)
Q Consensus 159 ~~~~h~~~v~~v~~spdg~~lat~~~dg~i~iwd~~~~~------~~~~~~~h~~~v~~l~~s---p----~~~~l~s~s 225 (540)
...+|.+.|.++++++ ++|+|++.|++|+|||..+.. .......|...+..+... + ++.++++++
T Consensus 9 ~~~~H~~~I~~v~~~~--~~l~S~S~D~~iriWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 86 (393)
T d1sq9a_ 9 AGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTS 86 (393)
T ss_dssp ESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEE
T ss_pred cCCcccCccEEEEEeC--CEEEEEECCCeEEEEECCCCCCCcccceeEeeeeccCCceEeeeEeeeccCCCCCcEEEEEe
Confidence 3458999999999875 689999999999999976542 223333455544433322 1 345688999
Q ss_pred CCCeEEEEEcCCCceeEec----------cccCCceeEEEECCC-----CCEEEEecCCCcEEEEEecCCCCCCcchhhh
Q psy18231 226 SDKSVILWEVTTGQPVRRW----------REHASKVTCVKFNED-----SSVVISGSQDNTVMMWDVKSRSHHPIQVRCL 290 (540)
Q Consensus 226 ~dg~i~iwd~~~~~~~~~~----------~~h~~~v~~~~~~~~-----~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~ 290 (540)
.||.|++|++........+ ..+...+..++|.++ +.++++++.||++++|++.........
T Consensus 87 ~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~---- 162 (393)
T d1sq9a_ 87 FSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNS---- 162 (393)
T ss_dssp TTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHH----
T ss_pred CCCcEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCcccce----
Confidence 9999999998765322111 134566788888775 468899999999999998765421100
Q ss_pred hHhhhhcCCceeEEEEeecccccccccCceeeEEEeeeecccccceeeeeeccceeEEEeecccceecccccccccccch
Q psy18231 291 NEALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSC 370 (540)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (540)
........... ...
T Consensus 163 ---~~~~~~~~~~~---------------------------------------------------------------~~~ 176 (393)
T d1sq9a_ 163 ---LTLNWSPTLEL---------------------------------------------------------------QGT 176 (393)
T ss_dssp ---TTTCCCCEEEE---------------------------------------------------------------EEE
T ss_pred ---eeeeeccceec---------------------------------------------------------------ccc
Confidence 00000000000 000
Q ss_pred hhhhhcccccEEEEEecC-CeeEeeeCCCeEEEEeCCCCceEEeeeC--------CceEEEEEecCCcEEEeecCCC---
Q psy18231 371 FQALKEARDSITSVHVSD-HEILTASLDCRIRRYDIRTGNLVTDYVG--------EPIVDACFTRDCQCILTCSTDE--- 438 (540)
Q Consensus 371 ~~~~~~~~~~v~~l~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~--------~~i~~~~~sp~~~~l~~~~~dg--- 438 (540)
......+...+.+++|+| .++++|+.||+|++||+++++.+..+.. .+|.+++|+|+|++|++|+.|+
T Consensus 177 ~~~~~~~~~~~~~v~~s~dg~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~D~t~~ 256 (393)
T d1sq9a_ 177 VESPMTPSQFATSVDISERGLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFG 256 (393)
T ss_dssp ECCSSSSCCCCCEEEECTTSEEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEE
T ss_pred eecccCCCCcEEEEEECCCCEEEEEeCCCcEEEEeecccccccccccccccccccceEEEcccccccceeeeecCCCCcc
Confidence 112234456688999999 7999999999999999999988776642 4799999999999999999886
Q ss_pred eEEEEeccccchhhhh-------------ccCcCCcceEEEEecCCCCeEEEeeCCCcEEEEEecCCcceeEEEecccce
Q psy18231 439 CLRLFDKATGELLEEY-------------KGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKA 505 (540)
Q Consensus 439 ~i~i~d~~~~~~~~~~-------------~~~~~~v~~~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~ 505 (540)
.|++||+++++.+..+ .+|...|+++ +|+|++++|++|+.|++|++||+++++++.++. +|.+
T Consensus 257 ~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l--~fspd~~~l~S~s~D~~v~vWd~~~g~~~~~l~--gH~~ 332 (393)
T d1sq9a_ 257 CITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSL--SFNDSGETLCSAGWDGKLRFWDVKTKERITTLN--MHCD 332 (393)
T ss_dssp EEEEEETTTCCEEEEECBC--------CCBSBSSCEEEE--EECSSSSEEEEEETTSEEEEEETTTTEEEEEEE--CCGG
T ss_pred eeeecccccceeeeeeccccccccceeeeecccCceeee--ccCCCCCeeEEECCCCEEEEEECCCCCEEEEEC--CcCC
Confidence 4999999988765554 4799999888 899999999999999999999999999999998 8877
Q ss_pred eee----EEEEcCCCcEEEee
Q psy18231 506 VVN----SLCSHPTRKHIMSA 522 (540)
Q Consensus 506 ~v~----~l~~s~d~~~l~s~ 522 (540)
.|. .++|+|++..++++
T Consensus 333 ~v~~~~~~~~~~~~~~~~~~~ 353 (393)
T d1sq9a_ 333 DIEIEEDILAVDEHGDSLAEP 353 (393)
T ss_dssp GCSSGGGCCCBCTTSCBCSSC
T ss_pred cccCCccEEEECCCCCEEEEc
Confidence 664 35566665554433
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=3.8e-33 Score=261.89 Aligned_cols=290 Identities=11% Similarity=0.065 Sum_probs=213.9
Q ss_pred eeeeecCeEEEEeCCCCCEEEEeeCCCcEEEEcCCCCee---EEEeecCCcceeEEEEeeCC-CeEEEeeCCCeEEEEEc
Q psy18231 160 ELFVLSGLMHTRFPVDGSYCLTCGSDKKIKLWNPYRNLL---LKTYGGHAHEVNDATAACDS-SQIASGASDKSVILWEV 235 (540)
Q Consensus 160 ~~~h~~~v~~v~~spdg~~lat~~~dg~i~iwd~~~~~~---~~~~~~h~~~v~~l~~sp~~-~~l~s~s~dg~i~iwd~ 235 (540)
+..|.+.|++|+|+|++++||+|+.||+|+|||+.++.. +....+|.++|.+++|+|++ .+|++|+.||+|++|++
T Consensus 7 ~~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v~~w~~ 86 (342)
T d1yfqa_ 7 EQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDL 86 (342)
T ss_dssp SSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECS
T ss_pred CCCCCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEEEEcccccceeeeec
Confidence 457999999999999999999999999999999876543 23334699999999999964 57999999999999999
Q ss_pred CCCceeEeccccCCce-eEEEECCCCCEEEEecCCCcEEEEEecCCCCCCcchhhhhHhhhhcCCceeEEEEeecccccc
Q psy18231 236 TTGQPVRRWREHASKV-TCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNH 314 (540)
Q Consensus 236 ~~~~~~~~~~~h~~~v-~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (540)
..+........+.... ....+.++...+++++.|+++++||++...........
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~------------------------- 141 (342)
T d1yfqa_ 87 IGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKN------------------------- 141 (342)
T ss_dssp SSSSSEEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEE-------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccceeeccccccceeeecc-------------------------
Confidence 9887777665554443 44555667889999999999999998765421111000
Q ss_pred cccCceeeEEEeeeecccccceeeeeeccceeEEEeecccceecccccccccccchhhhhhcccccEEEEEecCCeeEee
Q psy18231 315 LSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEARDSITSVHVSDHEILTA 394 (540)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~~~ 394 (540)
..............+...+..++++
T Consensus 142 -------------------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (342)
T d1yfqa_ 142 -------------------------------------------------------LNSNNTKVKNKIFTMDTNSSRLIVG 166 (342)
T ss_dssp -------------------------------------------------------SCSSSSSSCCCEEEEEECSSEEEEE
T ss_pred -------------------------------------------------------cccccccceeeeeeeeccCCceeee
Confidence 0000011122334445556889999
Q ss_pred eCCCeEEEEeCCCCceEEeee-----CCceEEEEE-ecCCcEEEeecCCCeEEEEeccccchh---------------hh
Q psy18231 395 SLDCRIRRYDIRTGNLVTDYV-----GEPIVDACF-TRDCQCILTCSTDECLRLFDKATGELL---------------EE 453 (540)
Q Consensus 395 ~~dg~i~iwd~~~~~~~~~~~-----~~~i~~~~~-sp~~~~l~~~~~dg~i~i~d~~~~~~~---------------~~ 453 (540)
+.|+.|++||+...+...... ...+.+..+ ++++..+++++.||.+.+|+....... ..
T Consensus 167 ~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (342)
T d1yfqa_ 167 MNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLK 246 (342)
T ss_dssp ESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTT
T ss_pred cCCCcEEEEecccCcccceeeeecccccceeeeEeecCCCCEEEeecCCCeEEEEEecCCcceeeccccceeeeeeeccC
Confidence 999999999998776433322 134555554 457789999999999999987654322 11
Q ss_pred hccCcCCcceEEEEecCCCCeEEEeeCCCcEEEEEecCCcceeEEEecccceeeeEEEEcCCCcEEEeec-CCeeEEEEc
Q psy18231 454 YKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC-GNNVKLWTA 532 (540)
Q Consensus 454 ~~~~~~~v~~~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~-d~~i~iw~~ 532 (540)
...|...+.++ +|+|++++|++|+.||.|++||+.+++.+..+. . ...+..++|+|++++|++++ |+.+++|..
T Consensus 247 ~~~~~~~v~~l--~~sp~~~~lasg~~Dg~v~vWD~~~~~~l~~~~--~-~~~~~~~~~s~~~~~l~~a~sdd~~~~~~~ 321 (342)
T d1yfqa_ 247 DTNLAYPVNSI--EFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFA--K-FNEDSVVKIACSDNILCLATSDDTFKTNAA 321 (342)
T ss_dssp CCSSCCCEEEE--EECTTTCCEEEEETTSCEEEEETTTTEEEEECC--C-CSSSEEEEEEECSSEEEEEEECTHHHHCSS
T ss_pred CCcccccceeE--EecCCccEEEEECCCCEEEEEECCCCcEEEEec--C-CCCCEEEEEEeCCCEEEEEEcCCcEEEeee
Confidence 23444555566 899999999999999999999999999888775 2 23455677888999999988 888887766
Q ss_pred cc
Q psy18231 533 EE 534 (540)
Q Consensus 533 ~~ 534 (540)
..
T Consensus 322 ~~ 323 (342)
T d1yfqa_ 322 ID 323 (342)
T ss_dssp SC
T ss_pred eC
Confidence 43
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=9.9e-32 Score=252.38 Aligned_cols=288 Identities=19% Similarity=0.323 Sum_probs=214.4
Q ss_pred EcCCCCeeEEEeecCCcceeEEEEeeCCCeEEEeeCCCeEEEEEcCCCceeEeccccCCceeEEEECCCCCEEEEecCCC
Q psy18231 191 WNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDN 270 (540)
Q Consensus 191 wd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg 270 (540)
|+..+.++.+.+++|++.|.+ +++++|++||||+.||+|+|||+.+++++..+.+|.+.|.+++|+|+ +|++++.|+
T Consensus 1 W~~~~~~~~~~l~GH~~~V~s-~~~~~g~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~~~~--~l~s~s~D~ 77 (342)
T d2ovrb2 1 WRRGELKSPKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDN--IIISGSTDR 77 (342)
T ss_dssp HHHSCCCCCEEEECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEETT--EEEEEETTS
T ss_pred CCCCCCCcCEEECCcCCceEE-EEEECCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCCEEEEEeCCC--ccccceecc
Confidence 666777888899999999876 47778999999999999999999999999999999999999999874 999999999
Q ss_pred cEEEEEecCCCCCCcchhhhhHhhhhcCCceeEEEEeecccccccccCceeeEEEeeeecccccceeeeeeccceeEEEe
Q psy18231 271 TVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLL 350 (540)
Q Consensus 271 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (540)
.+++|+........... .....+. ..... .........+..+.++
T Consensus 78 ~~~~~~~~~~~~~~~~~-----------~~~~~~~------------------~~~~~------~~~~~~~~~d~~i~~~ 122 (342)
T d2ovrb2 78 TLKVWNAETGECIHTLY-----------GHTSTVR------------------CMHLH------EKRVVSGSRDATLRVW 122 (342)
T ss_dssp CEEEEETTTTEEEEEEC-----------CCSSCEE------------------EEEEE------TTEEEEEETTSEEEEE
T ss_pred cccccccccccceeccc-----------ccceeEe------------------eeecc------cccccccccceeEEEe
Confidence 99999987654211000 0000000 00000 0001112223333333
Q ss_pred ecccceecccccccccccchhhhhhcccccEEEEEecCCeeEeeeCCCeEEEEeCCCCceEEeeeCCceEEEEEecCCcE
Q psy18231 351 DFLGSTQIGDVTPISIHNSCFQALKEARDSITSVHVSDHEILTASLDCRIRRYDIRTGNLVTDYVGEPIVDACFTRDCQC 430 (540)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~i~~~~~sp~~~~ 430 (540)
+........ .+..+.............+++++.|+.|++||.+..+.+..+.++......+++++.+
T Consensus 123 ~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (342)
T d2ovrb2 123 DIETGQCLH-------------VLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDGIH 189 (342)
T ss_dssp ESSSCCEEE-------------EEECCSSCEEEEEECSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEECSSE
T ss_pred eccccccee-------------eeecccccceeeccccceeeeecCCCeEEEeecccceeeEEEcCcccccccccCCCCE
Confidence 332221111 1122223333444445889999999999999999999999998888788888889999
Q ss_pred EEeecCCCeEEEEeccccchhhhhccCcCCcceEEEEecCCCCeEEEeeCCCcEEEEEecCCcceeEEEe-cccceeeeE
Q psy18231 431 ILTCSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIH-SVGKAVVNS 509 (540)
Q Consensus 431 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~-~~~~~~v~~ 509 (540)
+++++.||.|++||++.++.+..+.+|...+.++ ++ ++++|++|+.||.|++||+...+....+.. ..|...+.+
T Consensus 190 l~s~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~--~~--~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 265 (342)
T d2ovrb2 190 VVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGM--EL--KDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTC 265 (342)
T ss_dssp EEEEETTSCEEEEETTTCCEEEEECCCCSCEEEE--EE--ETTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEE
T ss_pred EEEEeCCCeEEEeecccceeeeEecccccceeEE--ec--CCCEEEEEcCCCEEEEEecccccccccccccceeeeceee
Confidence 9999999999999999999999999998877655 44 456999999999999999999888877762 235566777
Q ss_pred EEEcCCCcEEEeec-CCeeEEEEcccc
Q psy18231 510 LCSHPTRKHIMSAC-GNNVKLWTAEED 535 (540)
Q Consensus 510 l~~s~d~~~l~s~~-d~~i~iw~~~~~ 535 (540)
+.++ ++++++++ ||+|++||++++
T Consensus 266 ~~~~--~~~~~s~s~Dg~i~iwd~~tg 290 (342)
T d2ovrb2 266 LQFN--KNFVITSSDDGTVKLWDLKTG 290 (342)
T ss_dssp EEEC--SSEEEEEETTSEEEEEETTTC
T ss_pred cccC--CCeeEEEcCCCEEEEEECCCC
Confidence 7765 56899999 999999999865
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.97 E-value=1.1e-30 Score=247.59 Aligned_cols=294 Identities=10% Similarity=0.018 Sum_probs=220.4
Q ss_pred ccceeeeecccccc-eeeeeecCeEEEEeCCCCCEEEEeeCCC--cEEEEcCCCCeeEEEeecCCcceeEEEEeeCCCeE
Q psy18231 145 KEWSIRVYRPLTVN-RELFVLSGLMHTRFPVDGSYCLTCGSDK--KIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQI 221 (540)
Q Consensus 145 ~~~~i~~~~~~~~~-~~~~h~~~v~~v~~spdg~~lat~~~dg--~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l 221 (540)
..+.|.+|+..... ....|...|.+++|+|||++|++++.+. .|++||..+++.. .+..|...|.+++|+|++++|
T Consensus 22 ~~g~v~v~d~~~~~~~~~~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~~-~~~~~~~~v~~~~~spdg~~l 100 (360)
T d1k32a3 22 SRGQAFIQDVSGTYVLKVPEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAE-KFEENLGNVFAMGVDRNGKFA 100 (360)
T ss_dssp ETTEEEEECTTSSBEEECSCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCEE-ECCCCCCSEEEEEECTTSSEE
T ss_pred ECCeEEEEECCCCcEEEccCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCcEE-EeeCCCceEEeeeeccccccc
Confidence 34689999987653 4567999999999999999998776553 7999999877654 567799999999999999999
Q ss_pred EEeeCCCeEEEEEcCCCceeEeccccCCceeEEEECCCCCEEEEec----------CCCcEEEEEecCCCCCCcchhhhh
Q psy18231 222 ASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGS----------QDNTVMMWDVKSRSHHPIQVRCLN 291 (540)
Q Consensus 222 ~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~----------~dg~i~iwd~~~~~~~~~~~~~~~ 291 (540)
++++.++.+++|++.+++....+..|...+.+++|+|+|++|+.++ .++.+++||+.+++..
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~~~-------- 172 (360)
T d1k32a3 101 VVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIF-------- 172 (360)
T ss_dssp EEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEE--------
T ss_pred ceeccccccccccccccceeeeeecccccccchhhccceeeeeeeccccccceeeccccceeeeccccCcee--------
Confidence 9999999999999999999999999999999999999999998643 3456888888765410
Q ss_pred HhhhhcCCceeEEEEeecccccccccCceeeEEEeeeecccccceeeeeeccceeEEEeecccceecccccccccccchh
Q psy18231 292 EALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCF 371 (540)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (540)
T Consensus 173 -------------------------------------------------------------------------------- 172 (360)
T d1k32a3 173 -------------------------------------------------------------------------------- 172 (360)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhhcccccEEEEEecC--CeeEeeeCCCeEEEEeCCCCceEE-------e--eeCCceEEEEEecCCcEEEeecCCC--
Q psy18231 372 QALKEARDSITSVHVSD--HEILTASLDCRIRRYDIRTGNLVT-------D--YVGEPIVDACFTRDCQCILTCSTDE-- 438 (540)
Q Consensus 372 ~~~~~~~~~v~~l~~~~--~~l~~~~~dg~i~iwd~~~~~~~~-------~--~~~~~i~~~~~sp~~~~l~~~~~dg-- 438 (540)
.+..+...+..+.|+| +.|++++.++.+.+||........ . ++......+.|++++..++++..+.
T Consensus 173 -~~~~~~~~~~~~~~spdg~~l~~~s~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~ 251 (360)
T d1k32a3 173 -AATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLND 251 (360)
T ss_dssp -ECSCSSSBEEEEEECTTSCEEEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTT
T ss_pred -eecccccccccccccCCCCEEEEEeCCCceEcccccccceeeccccceEEEecccCccccceECCCcCcccccceeecc
Confidence 2234556677888888 789999999999999987554321 1 1123344456777777766554432
Q ss_pred ---eEEEEeccccchhhhhccCcCCcceEEEEec---CCCCeEEEeeCCCcEEEEEecCCcceeEEEecccceeeeEEEE
Q psy18231 439 ---CLRLFDKATGELLEEYKGHKSGDFRIECCLD---SKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCS 512 (540)
Q Consensus 439 ---~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~s---~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~ 512 (540)
.+..++...++. ..+..+...+..+ .+. +++.++++++.++.|++||+.+++.. .|.+.|.+++|
T Consensus 252 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~------~~~~~v~~~~~ 322 (360)
T d1k32a3 252 MYKRSSPINVDPGDY-RMIIPLESSILIY--SVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVT------EVKNNLTDLRL 322 (360)
T ss_dssp GGGGCEECSCCCBCE-EEEEECSSEEEEE--ECCCCCSHHHHHHCCCCCEEEEEEETTTCCEE------EEEEEEEEEEE
T ss_pred cccceeecccCcCce-eEeeecCCCceEE--EEEecCCCeeEEEecCCCCEEEEEECCCCeEE------EecCCcCEEEE
Confidence 244444444432 2233343333333 333 33446888999999999998876542 34566999999
Q ss_pred cCCCcEEEeec-CCeeEEEEcccccC
Q psy18231 513 HPTRKHIMSAC-GNNVKLWTAEEDYG 537 (540)
Q Consensus 513 s~d~~~l~s~~-d~~i~iw~~~~~~~ 537 (540)
||||++|++++ ||.|++|+++++..
T Consensus 323 SpDG~~l~~~~~Dg~i~v~d~~~~~~ 348 (360)
T d1k32a3 323 SADRKTVMVRKDDGKIYTFPLEKPED 348 (360)
T ss_dssp CTTSCEEEEEETTSCEEEEESSCTTS
T ss_pred CCCCCEEEEEECCCeEEEEECCCCCc
Confidence 99999999999 99999999987654
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.97 E-value=2.1e-29 Score=241.61 Aligned_cols=253 Identities=11% Similarity=0.098 Sum_probs=181.9
Q ss_pred EEeecCCcceeEEEEeeCCCeEEEeeCCCeEEEEEcCCCce------eEeccccCCceeEEEE------CC-CCCEEEEe
Q psy18231 200 KTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQP------VRRWREHASKVTCVKF------NE-DSSVVISG 266 (540)
Q Consensus 200 ~~~~~h~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~------~~~~~~h~~~v~~~~~------~~-~~~~l~s~ 266 (540)
...++|.+.|++++++ +++++|+|.|++|+|||..+.+. ......|...+..+.. +. ++.+++++
T Consensus 8 ~~~~~H~~~I~~v~~~--~~~l~S~S~D~~iriWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 85 (393)
T d1sq9a_ 8 NAGKAHDADIFSVSAC--NSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATT 85 (393)
T ss_dssp EESSCSSSCEEEEEEC--SSEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEE
T ss_pred ecCCcccCccEEEEEe--CCEEEEEECCCeEEEEECCCCCCCcccceeEeeeeccCCceEeeeEeeeccCCCCCcEEEEE
Confidence 3457899999999986 47999999999999999876542 1222234443332222 22 33578899
Q ss_pred cCCCcEEEEEecCCCCCCcchhhhhHhhhhcCCceeEEEEeecccccccccCceeeEEEeeeecccccceeeeeecccee
Q psy18231 267 SQDNTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHL 346 (540)
Q Consensus 267 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (540)
+.||.|++|++............ .
T Consensus 86 ~~dg~v~~w~~~~~~~~~~~~~~--------------------------------------~------------------ 109 (393)
T d1sq9a_ 86 SFSGDLLFYRITREDETKKVIFE--------------------------------------K------------------ 109 (393)
T ss_dssp ETTSCEEEEEEEECTTTCCEEEE--------------------------------------E------------------
T ss_pred eCCCcEEEEEccCCCceeeeecc--------------------------------------c------------------
Confidence 99999999998766521111000 0
Q ss_pred EEEeecccceecccccccccccchhhhhhcccccEEEEEecC-------CeeEeeeCCCeEEEEeCCCCce---------
Q psy18231 347 MVLLDFLGSTQIGDVTPISIHNSCFQALKEARDSITSVHVSD-------HEILTASLDCRIRRYDIRTGNL--------- 410 (540)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~-------~~l~~~~~dg~i~iwd~~~~~~--------- 410 (540)
........+...+..+++.+ .++++++.||.+++|++.....
T Consensus 110 ----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~~~~~~ 167 (393)
T d1sq9a_ 110 ----------------------LDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNW 167 (393)
T ss_dssp ----------------------ECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCC
T ss_pred ----------------------cceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCcccceeeeee
Confidence 00001112334444555533 5688999999999999753210
Q ss_pred --E----Eeee-----CCceEEEEEecCCcEEEeecCCCeEEEEeccccchhh------hhccCcCCcceEEEEecCCCC
Q psy18231 411 --V----TDYV-----GEPIVDACFTRDCQCILTCSTDECLRLFDKATGELLE------EYKGHKSGDFRIECCLDSKDS 473 (540)
Q Consensus 411 --~----~~~~-----~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~------~~~~~~~~v~~~~~~~s~~~~ 473 (540)
. .... ...+.+++|+|++ +|++|+.|++|++||+.+++.+. .+.+|..+|.++ +|+|+|+
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~v~~s~dg-~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l--~~spdg~ 244 (393)
T d1sq9a_ 168 SPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSV--KFSPQGS 244 (393)
T ss_dssp CCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEE--EECSSTT
T ss_pred ccceecccceecccCCCCcEEEEEECCCC-EEEEEeCCCcEEEEeecccccccccccccccccccceEEEc--ccccccc
Confidence 0 1111 1358899999997 88999999999999999887654 456788899888 8999999
Q ss_pred eEEEeeCCCc---EEEEEecCCcceeEEEe-----------cccceeeeEEEEcCCCcEEEeec-CCeeEEEEcccc
Q psy18231 474 QIFCGSSDGK---IYKWQLVDSSQISTLIH-----------SVGKAVVNSLCSHPTRKHIMSAC-GNNVKLWTAEED 535 (540)
Q Consensus 474 ~l~s~s~dg~---i~iwd~~~~~~~~~~~~-----------~~~~~~v~~l~~s~d~~~l~s~~-d~~i~iw~~~~~ 535 (540)
+|++|+.|++ |++||+++++.+..+.. .+|.+.|++++|+||+++|++++ |++|++||++++
T Consensus 245 ~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~v~vWd~~~g 321 (393)
T d1sq9a_ 245 LLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTK 321 (393)
T ss_dssp EEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTT
T ss_pred eeeeecCCCCcceeeecccccceeeeeeccccccccceeeeecccCceeeeccCCCCCeeEEECCCCEEEEEECCCC
Confidence 9999999975 99999999988877742 26999999999999999999999 999999999875
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.97 E-value=4.1e-28 Score=222.09 Aligned_cols=259 Identities=19% Similarity=0.352 Sum_probs=209.4
Q ss_pred eeccccchhhhhhcccccceeeeecccccce---eeeeecCeEEEEeCCCCCEEEEeeCCCcEEEEcCCCCeeEEEeecC
Q psy18231 129 LFSLPRTITRILYELPKEWSIRVYRPLTVNR---ELFVLSGLMHTRFPVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGH 205 (540)
Q Consensus 129 ~~s~~~~~~~~~~~~~~~~~i~~~~~~~~~~---~~~h~~~v~~v~~spdg~~lat~~~dg~i~iwd~~~~~~~~~~~~h 205 (540)
.++++ ...+++++.|++|++|+..+.+. ..+|.++|++++| ++++|++|+.|+.|++|++..+........+
T Consensus 20 c~~~d---~~~l~sgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~v~~--~~~~l~s~s~D~~i~~~~~~~~~~~~~~~~~ 94 (293)
T d1p22a2 20 CLQYD---DQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNTLIHH 94 (293)
T ss_dssp EEECC---SSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEEEEECCC
T ss_pred EEEEc---CCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEeeeec--ccceeeccccccccccccccccccccccccc
Confidence 34554 34678889999999999877543 3459999999987 5779999999999999999999887777654
Q ss_pred CcceeEEEEeeCCCeEEEeeCCCeEEEEEcCCCce---eEeccccCCceeEEEECCCCCEEEEecCCCcEEEEEecCCCC
Q psy18231 206 AHEVNDATAACDSSQIASGASDKSVILWEVTTGQP---VRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSH 282 (540)
Q Consensus 206 ~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~---~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~ 282 (540)
.... ..+.+....++++..++.+.+|+...... ...+..|...+..+.+.+ ..+++++.|+.|++||+++.+.
T Consensus 95 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~~s~d~~i~~~d~~~~~~ 170 (293)
T d1p22a2 95 CEAV--LHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDD--KYIVSASGDRTIKVWNTSTCEF 170 (293)
T ss_dssp CSCE--EEEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEET--TEEEEEETTSEEEEEETTTCCE
T ss_pred cccc--ccccccccceeecccccceeEeeccccccccccccccccccccccceecc--cccccccCCCceeeecCCCCcE
Confidence 4433 44556677899999999999999987653 344567888998888864 4788899999999999987651
Q ss_pred CCcchhhhhHhhhhcCCceeEEEEeecccccccccCceeeEEEeeeecccccceeeeeeccceeEEEeecccceeccccc
Q psy18231 283 HPIQVRCLNEALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVT 362 (540)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (540)
T Consensus 171 -------------------------------------------------------------------------------- 170 (293)
T d1p22a2 171 -------------------------------------------------------------------------------- 170 (293)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccchhhhhhcccccEEEEEecCCeeEeeeCCCeEEEEeCCCCceEEeeeCCceEEEEEecCCcEEEeecCCCeEEE
Q psy18231 363 PISIHNSCFQALKEARDSITSVHVSDHEILTASLDCRIRRYDIRTGNLVTDYVGEPIVDACFTRDCQCILTCSTDECLRL 442 (540)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~i~i 442 (540)
+..+.++...+..+.+++..+++++.||.|++||+++.+.+....++......+++++.+|++++.||.|++
T Consensus 171 --------~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~dg~i~i 242 (293)
T d1p22a2 171 --------VRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKV 242 (293)
T ss_dssp --------EEEEECCSSCEEEEEEETTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEECCSSEEEEEETTSCEEE
T ss_pred --------EEEEcccccccccccCCCCeEEEecCCCEEEEEecccceeeeeecccceeeeeccccceEEEEEcCCCEEEE
Confidence 113445677788889999999999999999999999999988887754444567789999999999999999
Q ss_pred Eecccc---------chhhhhccCcCCcceEEEEecCCCCeEEEeeCCCcEEEEE
Q psy18231 443 FDKATG---------ELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQ 488 (540)
Q Consensus 443 ~d~~~~---------~~~~~~~~~~~~v~~~~~~~s~~~~~l~s~s~dg~i~iwd 488 (540)
||+... ..+..+.+|...|+++ +| ++++|++|+.||+|++||
T Consensus 243 wd~~~~~~~~~~~~~~~~~~~~~H~~~V~~v--~~--d~~~l~s~s~Dg~i~iWD 293 (293)
T d1p22a2 243 WDLVAALDPRAPAGTLCLRTLVEHSGRVFRL--QF--DEFQIVSSSHDDTILIWD 293 (293)
T ss_dssp EEHHHHTSTTSCTTTTEEEEECCCSSCCCCE--EE--CSSCEEECCSSSEEEEEC
T ss_pred EECCCCccccccCCceeeEEecCCCCCEEEE--EE--cCCEEEEEecCCEEEEeC
Confidence 998654 2356678899999887 56 467899999999999997
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.96 E-value=2.6e-28 Score=228.54 Aligned_cols=251 Identities=12% Similarity=0.079 Sum_probs=184.5
Q ss_pred eeEEEeecCCcceeEEEEeeCCCeEEEeeCCCeEEEEEcCCCceeEe---ccccCCceeEEEECCC-CCEEEEecCCCcE
Q psy18231 197 LLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPVRR---WREHASKVTCVKFNED-SSVVISGSQDNTV 272 (540)
Q Consensus 197 ~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~---~~~h~~~v~~~~~~~~-~~~l~s~~~dg~i 272 (540)
+.+...++|++.|++|+|+|++++||+|+.||+|+|||++++..... ..+|.++|.+++|+|+ +.+|++|+.||.|
T Consensus 2 ~~v~~~~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v 81 (342)
T d1yfqa_ 2 QIVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEI 81 (342)
T ss_dssp EEEECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCE
T ss_pred CeEEcCCCCCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEEEEcccccce
Confidence 45666789999999999999999999999999999999987654332 3369999999999986 4689999999999
Q ss_pred EEEEecCCCCCCcchhhhhHhhhhcCCceeEEEEeecccccccccCceeeEEEeeeecccccceeeeeeccceeEEEeec
Q psy18231 273 MMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDF 352 (540)
Q Consensus 273 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (540)
++|++.........
T Consensus 82 ~~w~~~~~~~~~~~------------------------------------------------------------------ 95 (342)
T d1yfqa_ 82 LKVDLIGSPSFQAL------------------------------------------------------------------ 95 (342)
T ss_dssp EEECSSSSSSEEEC------------------------------------------------------------------
T ss_pred eeeecccccccccc------------------------------------------------------------------
Confidence 99999876521100
Q ss_pred ccceecccccccccccchhhhhhccccc--EEEEEecCCeeEeeeCCCeEEEEeCCCCceEEee----eC----CceEEE
Q psy18231 353 LGSTQIGDVTPISIHNSCFQALKEARDS--ITSVHVSDHEILTASLDCRIRRYDIRTGNLVTDY----VG----EPIVDA 422 (540)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--v~~l~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~----~~----~~i~~~ 422 (540)
...+... ..........+++++.++.+++||++++...... .. ......
T Consensus 96 ---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (342)
T d1yfqa_ 96 ---------------------TNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIF 154 (342)
T ss_dssp ---------------------BSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEE
T ss_pred ---------------------cccccccccccccccccccccccccccccceeeccccccceeeecccccccccceeeee
Confidence 0011111 1122223388999999999999998765432222 11 345667
Q ss_pred EEecCCcEEEeecCCCeEEEEeccccchhhhhcc---CcCCcceEEEEecCCCCeEEEeeCCCcEEEEEecCCcce----
Q psy18231 423 CFTRDCQCILTCSTDECLRLFDKATGELLEEYKG---HKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQI---- 495 (540)
Q Consensus 423 ~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~---~~~~v~~~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~---- 495 (540)
.+.+++..+++++.|+.|++||+...+....... +....... ..+..++..+++++.||.+.+|+.......
T Consensus 155 ~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~ 233 (342)
T d1yfqa_ 155 TMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDV-ALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSS 233 (342)
T ss_dssp EEEECSSEEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEE-EECSGGGCEEEEEETTSEEEEEECCTTCCSTTCT
T ss_pred eeeccCCceeeecCCCcEEEEecccCcccceeeeecccccceeee-EeecCCCCEEEeecCCCeEEEEEecCCcceeecc
Confidence 7888999999999999999999987765443322 22222222 245567788999999999999997654221
Q ss_pred --eEEE-------ecccceeeeEEEEcCCCcEEEeec-CCeeEEEEcccc
Q psy18231 496 --STLI-------HSVGKAVVNSLCSHPTRKHIMSAC-GNNVKLWTAEED 535 (540)
Q Consensus 496 --~~~~-------~~~~~~~v~~l~~s~d~~~l~s~~-d~~i~iw~~~~~ 535 (540)
..+. ...|...|++++|+|++++|++|+ ||.|++||++++
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~lasg~~Dg~v~vWD~~~~ 283 (342)
T d1yfqa_ 234 KRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTR 283 (342)
T ss_dssp TCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTT
T ss_pred ccceeeeeeeccCCCcccccceeEEecCCccEEEEECCCCEEEEEECCCC
Confidence 1111 125667899999999999999999 999999999864
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.96 E-value=3.1e-27 Score=228.75 Aligned_cols=318 Identities=12% Similarity=0.085 Sum_probs=224.5
Q ss_pred hhcccccceeeeecccccce--eeeeecCeEEEEeCCCCCEEEEeeCCCcEEEEcCCCCeeEEE--e---ecCCcceeEE
Q psy18231 140 LYELPKEWSIRVYRPLTVNR--ELFVLSGLMHTRFPVDGSYCLTCGSDKKIKLWNPYRNLLLKT--Y---GGHAHEVNDA 212 (540)
Q Consensus 140 ~~~~~~~~~i~~~~~~~~~~--~~~h~~~v~~v~~spdg~~lat~~~dg~i~iwd~~~~~~~~~--~---~~h~~~v~~l 212 (540)
+...+.+++|++|+..+... .+.+...+..++|||||++|++++.|++|++||+.+++.... + .+|.+.+.++
T Consensus 35 ~V~~~~dg~v~vwD~~t~~~~~~l~~g~~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~~~~~~~s~ 114 (426)
T d1hzua2 35 SVTLRDAGQIALVDGDSKKIVKVIDTGYAVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSK 114 (426)
T ss_dssp EEEETTTTEEEEEETTTCSEEEEEECCSSEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEEECC
T ss_pred EEEEcCCCEEEEEECCCCcEEEEEeCCCCeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeEEEEEeCCCCCcceEEee
Confidence 35567889999999988653 333446799999999999999999999999999998875433 2 3566777888
Q ss_pred EEeeCCCeEEE-eeCCCeEEEEEcCCCceeEeccccCCceeEEEECCCCC-EEEEecCCCcEEEEEecCCCCCCcchhhh
Q psy18231 213 TAACDSSQIAS-GASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSS-VVISGSQDNTVMMWDVKSRSHHPIQVRCL 290 (540)
Q Consensus 213 ~~sp~~~~l~s-~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~ 290 (540)
+|+|||++|++ +..++++++||..+++.+..+..|...+....+.+++. ..+.++.|+...++....... +
T Consensus 115 ~~spDG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~~~--i----- 187 (426)
T d1hzua2 115 FKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGK--V----- 187 (426)
T ss_dssp STTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTE--E-----
T ss_pred eecCCCCEEEEeecCCCeEEEEcCCccceeEEeeccCCCccceeecCCCceeEEEECCCCCEEEEecCCCCe--E-----
Confidence 88999998755 45789999999999999988887777776666766654 344555666665555443220 0
Q ss_pred hHhhhhcCCceeEEEEeecccccccccCceeeEEEeeeecccccceeeeeeccceeEEEeecccceecccccccccccch
Q psy18231 291 NEALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSC 370 (540)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (540)
......... ..
T Consensus 188 ---------------------------------------------------------~~~~~~~~~------------~~ 198 (426)
T d1hzua2 188 ---------------------------------------------------------LLVNYKDID------------NL 198 (426)
T ss_dssp ---------------------------------------------------------EEEECSSSS------------SC
T ss_pred ---------------------------------------------------------EEEEecccc------------ce
Confidence 000000000 00
Q ss_pred hhhhhcccccEEEEEecC--CeeEee-eCCCeEEEEeCCCCceEEeeeC----CceEEEEEecCCc---EEEeecCCCeE
Q psy18231 371 FQALKEARDSITSVHVSD--HEILTA-SLDCRIRRYDIRTGNLVTDYVG----EPIVDACFTRDCQ---CILTCSTDECL 440 (540)
Q Consensus 371 ~~~~~~~~~~v~~l~~~~--~~l~~~-~~dg~i~iwd~~~~~~~~~~~~----~~i~~~~~sp~~~---~l~~~~~dg~i 440 (540)
......+...+..+.++| ++++++ ..+..+.+++..+++.+..... +......+.+.+. ..+..+.|+.+
T Consensus 199 ~~~~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v 278 (426)
T d1hzua2 199 TVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSI 278 (426)
T ss_dssp EEEEEECCSSEEEEEECTTSCEEEEEETTCSEEEEEETTTTEEEEEEECSSCCCCSCCEEEEETTTEEEEEEECTTTCEE
T ss_pred eeEEeccCCccEeeeECCCCcEEEeeeecccceeeeecccccEEEEeccCCcccccceeeeecCCCCceEEeccCCCceE
Confidence 001224556778889988 544444 5677899999999998877653 2333444444332 22334567888
Q ss_pred EEEeccc-------cchhhhhccCcCCcceEEEEecCCCCeEEE-------eeCCCcEEEEEecCCcceeEEEe------
Q psy18231 441 RLFDKAT-------GELLEEYKGHKSGDFRIECCLDSKDSQIFC-------GSSDGKIYKWQLVDSSQISTLIH------ 500 (540)
Q Consensus 441 ~i~d~~~-------~~~~~~~~~~~~~v~~~~~~~s~~~~~l~s-------~s~dg~i~iwd~~~~~~~~~~~~------ 500 (540)
.+|+... ++....+.+|...+..+ +|+||+++|++ ++.|++|+|||+.+++...++..
T Consensus 279 ~~~~~~~~~~~~~~~~~~~~l~g~~~~v~~v--~~sPdg~~l~v~~~~~~s~~~~~tv~vwd~~t~~~~~~~~~~~~~~~ 356 (426)
T d1hzua2 279 SLIGTDPKNHPQYAWKKVAELQGQGGGSLFI--KTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWAD 356 (426)
T ss_dssp EEEECCTTTCTTTBTSEEEEEECSSSCCCCE--ECCTTCSEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHC
T ss_pred EEeeccccccccccceEeEEEecCCCceeEE--EcCCCCceEEEeecCCCCcccCCEEEEEECCCCCcCeEEeccchhcc
Confidence 8887654 35667788999888888 89999999994 56789999999999988777641
Q ss_pred -cccceeeeEEEEcCCCcEEEe-----ec-CCeeEEEEcccc
Q psy18231 501 -SVGKAVVNSLCSHPTRKHIMS-----AC-GNNVKLWTAEED 535 (540)
Q Consensus 501 -~~~~~~v~~l~~s~d~~~l~s-----~~-d~~i~iw~~~~~ 535 (540)
..|...|.+++|||||++++. ++ |+.|+|||..+.
T Consensus 357 ~~~~~~rv~~~~fSpDGk~i~vs~~~~~~~~~~i~v~D~~T~ 398 (426)
T d1hzua2 357 LGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTL 398 (426)
T ss_dssp CCSSCCCEEEEEECSSSSEEEEEECCCTTSCCEEEEEETTTT
T ss_pred cCCCCccEEEEEECCCCCEEEEEEecCCCCCCeEEEEECCCC
Confidence 135567999999999997742 24 789999998865
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.96 E-value=4.9e-28 Score=221.53 Aligned_cols=232 Identities=13% Similarity=0.193 Sum_probs=186.3
Q ss_pred CeeEEEeecCCcceeEEEEeeCCCeEEEeeCCCeEEEEEcCCCceeEeccccCCceeEEEECCCCCEEEEecCCCcEEEE
Q psy18231 196 NLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMW 275 (540)
Q Consensus 196 ~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iw 275 (540)
.++++++++|..+|++++|+| |+||+.||+|++||+.++ ..+|...|.++.+++++ .+++++.|+++++|
T Consensus 3 ~~~i~~l~gH~~~I~~l~~s~----l~sgs~Dg~v~~Wd~~~~-----~~~h~~~V~~~~~~~~~-~~~s~s~D~~v~~w 72 (287)
T d1pgua2 3 DEVLKTISGHNKGITALTVNP----LISGSYDGRIMEWSSSSM-----HQDHSNLIVSLDNSKAQ-EYSSISWDDTLKVN 72 (287)
T ss_dssp EEEEEEECCCSSCEEEEETTT----TEEEETTSCEEETTTTEE-----ECCCCSCEEEEECCSTT-CCEEEETTTEEEET
T ss_pred cceeEEECCCCCceEEEEECc----EEEEeCCCeEEEEECCCC-----CCCCCCCEEEEEecCCC-eEEEEeeccccccc
Confidence 578899999999999999986 999999999999998764 35899999999998764 67899999999999
Q ss_pred EecCCCCCCcchhhhhHhhhhcCCceeEEEEeecccccccccCceeeEEEeeeecccccceeeeeeccceeEEEeecccc
Q psy18231 276 DVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGS 355 (540)
Q Consensus 276 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (540)
++...+
T Consensus 73 ~~~~~~-------------------------------------------------------------------------- 78 (287)
T d1pgua2 73 GITKHE-------------------------------------------------------------------------- 78 (287)
T ss_dssp TEEEEE--------------------------------------------------------------------------
T ss_pred cccccc--------------------------------------------------------------------------
Confidence 876432
Q ss_pred eecccccccccccchhhhhhcccccEEEEEecC-CeeEeeeCCCeEEEEeCCCCceEEeeeCCceEEEEEecCCcEEEee
Q psy18231 356 TQIGDVTPISIHNSCFQALKEARDSITSVHVSD-HEILTASLDCRIRRYDIRTGNLVTDYVGEPIVDACFTRDCQCILTC 434 (540)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~ 434 (540)
....+..+.+++ ..++..+.++.+.+|+..+++.+..+.... ...+++|+++.++++
T Consensus 79 ---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~v~ 136 (287)
T d1pgua2 79 ---------------------FGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNS-PGSAVSLSQNYVAVG 136 (287)
T ss_dssp ---------------------CSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSS-CEEEEEECSSEEEEE
T ss_pred ---------------------cccceeeeeeccCCceEEEeecccceeeeccceeeeeeccccc-eeeeeeccCcceeee
Confidence 112344566666 666667778889999999999888776532 345678888888888
Q ss_pred cCCC-eEEEEeccccchhhhhc-cCcCCcceEEEEecCCCCeEEEeeCCCcEEEEEecCCcceeEEEecccceeeeEEEE
Q psy18231 435 STDE-CLRLFDKATGELLEEYK-GHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCS 512 (540)
Q Consensus 435 ~~dg-~i~i~d~~~~~~~~~~~-~~~~~v~~~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~ 512 (540)
+.++ .+++|++...+....+. .|...+.++ +|+|++.+|++|+.||.|++||+.+++...... ..|...|++++|
T Consensus 137 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~~--~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~-~~h~~~v~~~~~ 213 (287)
T d1pgua2 137 LEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYI--SISPSETYIAAGDVMGKILLYDLQSREVKTSRW-AFRTSKINAISW 213 (287)
T ss_dssp ETTTSCEEEEETTEEEEEEECSSCCSSCEEEE--EECTTSSEEEEEETTSCEEEEETTTTEEEECCS-CCCSSCEEEEEE
T ss_pred ccccceeeeeeccccceeeeeeeccCCceeEE--EeccCccccccccccccccceeecccccccccc-cccccccceeee
Confidence 7765 79999998766554443 466677777 899999999999999999999998887654322 279999999999
Q ss_pred cCC----------CcEEEeec-CCeeEEEEccccc
Q psy18231 513 HPT----------RKHIMSAC-GNNVKLWTAEEDY 536 (540)
Q Consensus 513 s~d----------~~~l~s~~-d~~i~iw~~~~~~ 536 (540)
+|+ +.+|++|+ |++|++|+++++.
T Consensus 214 ~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~ 248 (287)
T d1pgua2 214 KPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPM 248 (287)
T ss_dssp CCCC------CCSCCEEEEEETTSCEEEEESSCTT
T ss_pred cccccccccccCCCCeeEeecCCCeEEEEECCCCC
Confidence 875 46899999 9999999997643
|
| >d1vhna_ c.1.4.1 (A:) Putative flavin oxidoreducatase TM0096 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Putative flavin oxidoreducatase TM0096 species: Thermotoga maritima [TaxId: 2336]
Probab=99.94 E-value=2e-28 Score=219.71 Aligned_cols=107 Identities=25% Similarity=0.406 Sum_probs=100.2
Q ss_pred CceEEeccCCCCCHHHHHHHHHcCCCEEEeeeeecccccccchhhccccccCCCCCCEEEEEecCChhHHHHHHHHhcCC
Q psy18231 16 NLKHCDSTLWTSKLNFRQLVRSHNVDLCFTPMIIADSFIKSSKARNNEFSTSPEDTPLVVQFASNNHDDFVRATQYVAPH 95 (540)
Q Consensus 16 ~~~~~ap~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~ 95 (540)
++++||||+|+||+|||++||++|+|++||||+++++++++.+...... .+++|+|+++|++|++|+.|++|++++.++
T Consensus 1 ~ki~LAPM~g~td~~fR~l~~~~g~~~~~Temi~~~~~~~~~~~~~~~~-~~~~e~p~~~Ql~g~~p~~~~~aa~~~~~~ 79 (305)
T d1vhna_ 1 VKVGLAPMAGYTDSAFRTLAFEWGADFAFSEMVSAKGFLMNSQKTEELL-PQPHERNVAVQIFGSEPNELSEAARILSEK 79 (305)
T ss_dssp CEEEECCCTTTCSHHHHHHHHTTTCCCEECSCEEHHHHHTTCHHHHHHS-CCTTCTTEEEEEECSCHHHHHHHHHHHTTT
T ss_pred CeEEEECcCCCccHHHHHHHHHHCcCEEEECCEEechhhhCChhhHhhc-cCCCCCCeEEEEeccchhhhhhhhhhhhhh
Confidence 5799999999999999999999999999999999999998877665544 588999999999999999999999999999
Q ss_pred CCeEeeccCCCceEEEeccccceecccc
Q psy18231 96 CNGVDLNCGCPQRWAIKEGYGCALLSKQ 123 (540)
Q Consensus 96 ~~~id~~~gc~~~~~~~~g~g~~l~~~~ 123 (540)
+++||+|+|||...+.+.|.|++||+++
T Consensus 80 ~~~IdlN~GCP~~~v~~~g~Ga~Ll~~p 107 (305)
T d1vhna_ 80 YKWIDLNAGCPVRKVVKEGAGGALLKDL 107 (305)
T ss_dssp CSEEEEEECCCCHHHHHTTCGGGGGSCH
T ss_pred eeeeeEEEEecchhhcccccceeeccCH
Confidence 9999999999999999999999999985
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=99.94 E-value=4.4e-26 Score=219.94 Aligned_cols=336 Identities=9% Similarity=0.000 Sum_probs=211.6
Q ss_pred hhcccccceeeeecccccce--eeeeecCeEEEEeCCCCCEEEEeeCCCcEEEEcCCCCee--EEEe---ecCCcceeEE
Q psy18231 140 LYELPKEWSIRVYRPLTVNR--ELFVLSGLMHTRFPVDGSYCLTCGSDKKIKLWNPYRNLL--LKTY---GGHAHEVNDA 212 (540)
Q Consensus 140 ~~~~~~~~~i~~~~~~~~~~--~~~h~~~v~~v~~spdg~~lat~~~dg~i~iwd~~~~~~--~~~~---~~h~~~v~~l 212 (540)
+...+.+++|.+|+..+... .+.....+..++|||||++|++++.|++|++||+.+++. ..++ .+|.+.+.+.
T Consensus 35 ~v~~~d~g~v~v~D~~t~~v~~~~~~g~~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~~~~~s~ 114 (432)
T d1qksa2 35 SVTLRDAGQIALIDGSTYEIKTVLDTGYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSK 114 (432)
T ss_dssp EEEETTTTEEEEEETTTCCEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEEECC
T ss_pred EEEEcCCCEEEEEECCCCcEEEEEeCCCCeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCCCCCCeEEec
Confidence 45678889999999987653 233335799999999999999999999999999988753 3333 3566777778
Q ss_pred EEeeCCCeE-EEeeCCCeEEEEEcCCCceeEeccc-----------cCCceeEEEECCCCCEE-EEecCCCcEEEEEecC
Q psy18231 213 TAACDSSQI-ASGASDKSVILWEVTTGQPVRRWRE-----------HASKVTCVKFNEDSSVV-ISGSQDNTVMMWDVKS 279 (540)
Q Consensus 213 ~~sp~~~~l-~s~s~dg~i~iwd~~~~~~~~~~~~-----------h~~~v~~~~~~~~~~~l-~s~~~dg~i~iwd~~~ 279 (540)
.|+|||++| ++++.+++|++||..+++.+..+.. +......+.++|++..+ ++...++.|.+||..+
T Consensus 115 ~~SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i~~~d~~~ 194 (432)
T d1qksa2 115 MEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTD 194 (432)
T ss_dssp STTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTC
T ss_pred ccCCCCCEEEEEcCCCCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEccCCeEEEEEccC
Confidence 889999986 6788899999999999998877654 34556788999988765 5667789999999876
Q ss_pred CCCCCcchhhhhHhhhhcCCceeEEEEeecccccccccCceeeEEEeeeecccccceeeeeeccceeEEEeecccceecc
Q psy18231 280 RSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIG 359 (540)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (540)
.+...+. .. ........+.++.++...+........+.
T Consensus 195 ~~~~~~~-----------------------------------------~i-~~g~~~~~~~~spdg~~~~va~~~~~~v~ 232 (432)
T d1qksa2 195 LNNLKTT-----------------------------------------EI-SAERFLHDGGLDGSHRYFITAANARNKLV 232 (432)
T ss_dssp SSEEEEE-----------------------------------------EE-ECCSSEEEEEECTTSCEEEEEEGGGTEEE
T ss_pred CCcceEE-----------------------------------------EE-cccCccccceECCCCCEEEEeccccceEE
Confidence 5521100 00 00111222223333322222111111110
Q ss_pred cccccccccchhhhhhc-----ccccEEEEEecC-Ce-eEee-eCCCeEEEEeCCCCceEEeeeCCceEEEEEecCCcEE
Q psy18231 360 DVTPISIHNSCFQALKE-----ARDSITSVHVSD-HE-ILTA-SLDCRIRRYDIRTGNLVTDYVGEPIVDACFTRDCQCI 431 (540)
Q Consensus 360 ~~~~~~~~~~~~~~~~~-----~~~~v~~l~~~~-~~-l~~~-~~dg~i~iwd~~~~~~~~~~~~~~i~~~~~sp~~~~l 431 (540)
-+.. ........... |........+.. .. ..+. ..++.+.+|+....... -+...+....++|++..+
T Consensus 233 v~d~--~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~lg~~~v~~~~~~~~~~~--~~~~~v~~~~~~~~g~~~ 308 (432)
T d1qksa2 233 VIDT--KEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDDSVALIGTDPEGHP--DNAWKILDSFPALGGGSL 308 (432)
T ss_dssp EEET--TTTEEEEEEECSSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTTTCT--TTBTSEEEEEECSCSCCC
T ss_pred Eeec--ccceEEEEeccCccccccCcccceecCCCCceecccccCCceEEeccccccccc--ccccEEEEEEEcCCCCeE
Confidence 0000 00001111100 111122222222 11 2221 23666777765543221 112457777888888888
Q ss_pred EeecCCCeEEEEeccccchhhhhccCcCCcceEEEEecCCCCeEEEeeCCCcEEEEEecCCcceeEEEecccceeeeEEE
Q psy18231 432 LTCSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLC 511 (540)
Q Consensus 432 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~ 511 (540)
++++.++..++|+..+.. .|......+ ++ ||++.|++++.|+.+++|++.++..+. .|...|.+++
T Consensus 309 ~~~s~p~~~~lw~~~~~~------~~~~~~~sv--~v-pDg~~la~~s~d~~~k~w~~~~~~~l~-----~~~~~v~~~~ 374 (432)
T d1qksa2 309 FIKTHPNSQYLYVDATLN------PEAEISGSV--AV-FDIKAMTGDGSDPEFKTLPIAEWAGIT-----EGQPRVVQGE 374 (432)
T ss_dssp CEECCTTCSEEEEECTTC------SSHHHHTCE--EE-EEGGGCCCSSSCCCEEEECHHHHHTCC-----SSCCEEEEEE
T ss_pred EEEecCCccceeecccCC------CCCCeeeEE--EE-EechhhcccccCCceEecccccccccC-----CCCCcEEEeE
Confidence 888888888888765432 233222334 33 899999999999999999986664432 4667899999
Q ss_pred EcCCCcEEEee-----c-CCeeEEEEcccc
Q psy18231 512 SHPTRKHIMSA-----C-GNNVKLWTAEED 535 (540)
Q Consensus 512 ~s~d~~~l~s~-----~-d~~i~iw~~~~~ 535 (540)
|||||++|+.+ . ++.|+|||..+.
T Consensus 375 fS~DG~~v~~S~~~~~~~~g~i~i~D~~T~ 404 (432)
T d1qksa2 375 FNKDGTEVWFSVWNGKDQESALVVVDDKTL 404 (432)
T ss_dssp ECTTSSEEEEEEECCTTSCCEEEEEETTTT
T ss_pred ECCCCCEEEEEEecCCCCCCcEEEEECCCc
Confidence 99999988544 2 688999998765
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=99.94 E-value=2.9e-24 Score=197.45 Aligned_cols=259 Identities=11% Similarity=0.110 Sum_probs=202.0
Q ss_pred EEeeCCCcEEEEcCCCCeeEEEeecCCcceeEEEEeeCCCeE-EEeeCCCeEEEEEcCCCceeEeccccCCceeEEEECC
Q psy18231 180 LTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQI-ASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNE 258 (540)
Q Consensus 180 at~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l-~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~ 258 (540)
++++.|++|.+||+++++.++++.. ...+..++|+|||++| ++++.++.|++||+.+++.+..+..|. .+..+.|++
T Consensus 6 V~~~~~~~v~v~D~~t~~~~~~i~~-g~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~~~~-~~~~~~~~~ 83 (301)
T d1l0qa2 6 IANSESDNISVIDVTSNKVTATIPV-GSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQGVAVSP 83 (301)
T ss_dssp EEETTTTEEEEEETTTTEEEEEEEC-SSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-SEEEEEECT
T ss_pred EEECCCCEEEEEECCCCeEEEEEEC-CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCceeeeeeccc-ccccccccc
Confidence 3567799999999999999999874 4567899999999987 566788999999999999999887665 468899999
Q ss_pred CCCEEE-EecCCCcEEEEEecCCCCCCcchhhhhHhhhhcCCceeEEEEeecccccccccCceeeEEEeeeeccccccee
Q psy18231 259 DSSVVI-SGSQDNTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLS 337 (540)
Q Consensus 259 ~~~~l~-s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (540)
++..++ ++..++.+.+|+..+++..
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------------------------------ 109 (301)
T d1l0qa2 84 DGKQVYVTNMASSTLSVIDTTSNTVA------------------------------------------------------ 109 (301)
T ss_dssp TSSEEEEEETTTTEEEEEETTTTEEE------------------------------------------------------
T ss_pred ccccccccccccceeeecccccceee------------------------------------------------------
Confidence 988655 5566788999998776410
Q ss_pred eeeeccceeEEEeecccceecccccccccccchhhhhhcccccEEEEEecC--Ce-eEeeeCCCeEEEEeCCCCceEEee
Q psy18231 338 GVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEARDSITSVHVSD--HE-ILTASLDCRIRRYDIRTGNLVTDY 414 (540)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~--~~-l~~~~~dg~i~iwd~~~~~~~~~~ 414 (540)
....+.....++.++| .. ++++..++.+.+|+..+.+....+
T Consensus 110 -----------------------------------~~~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (301)
T d1l0qa2 110 -----------------------------------GTVKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTV 154 (301)
T ss_dssp -----------------------------------EEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred -----------------------------------eeccccccceEEEeecCCCeeeeeeccccceeeeeccccceeeec
Confidence 0112234556778877 33 456677899999999999988887
Q ss_pred eC-CceEEEEEecCCcEEEeecCC-CeEEEEeccccchhhhhccCcCCcceEEEEecCCCCeEEEee---CCCcEEEEEe
Q psy18231 415 VG-EPIVDACFTRDCQCILTCSTD-ECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGS---SDGKIYKWQL 489 (540)
Q Consensus 415 ~~-~~i~~~~~sp~~~~l~~~~~d-g~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~s~~~~~l~s~s---~dg~i~iwd~ 489 (540)
.. .....+.++|+++.+++++.+ +.+.+|+....+....+..+.. ... .+++++++.++.++ .++.|++||+
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~g~~~~v~~~~~~~~~v~v~D~ 231 (301)
T d1l0qa2 155 SVGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVEAA-PSG--IAVNPEGTKAYVTNVDKYFNTVSMIDT 231 (301)
T ss_dssp ECCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSE-EEE--EEECTTSSEEEEEEECSSCCEEEEEET
T ss_pred ccCCCceEEEeeccccceeeecccccccccccccceeeeecccccCC-cce--eeccccccccccccccceeeeeeeeec
Confidence 65 568899999999988777654 6777888777766666554443 233 37999999877654 4468999999
Q ss_pred cCCcceeEEEecccceeeeEEEEcCCCcEE-Eeec-CCeeEEEEcccc
Q psy18231 490 VDSSQISTLIHSVGKAVVNSLCSHPTRKHI-MSAC-GNNVKLWTAEED 535 (540)
Q Consensus 490 ~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l-~s~~-d~~i~iw~~~~~ 535 (540)
.+++.+..+. +...+.+++|+|||++| ++++ |++|++||++++
T Consensus 232 ~t~~~~~~~~---~~~~~~~va~spdg~~l~va~~~~~~i~v~D~~t~ 276 (301)
T d1l0qa2 232 GTNKITARIP---VGPDPAGIAVTPDGKKVYVALSFCNTVSVIDTATN 276 (301)
T ss_dssp TTTEEEEEEE---CCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTT
T ss_pred CCCeEEEEEc---CCCCEEEEEEeCCCCEEEEEECCCCeEEEEECCCC
Confidence 9999988886 34568999999999987 5667 999999999875
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.94 E-value=8.6e-27 Score=220.40 Aligned_cols=270 Identities=11% Similarity=0.044 Sum_probs=199.5
Q ss_pred EEEeCC-CCCEEEEeeCCCcEEEEcCCCCeeEEEeecCCcceeEEEEeeCCCeEEEeeCCC--eEEEEEcCCCceeEecc
Q psy18231 169 HTRFPV-DGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDK--SVILWEVTTGQPVRRWR 245 (540)
Q Consensus 169 ~v~~sp-dg~~lat~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~dg--~i~iwd~~~~~~~~~~~ 245 (540)
.-.||| ||+++|+++ +|.|.+||..++..+. + +|...|.+++|+|||++|++++.+. .|++||+++++.. .+.
T Consensus 7 ~~~fSP~dG~~~a~~~-~g~v~v~d~~~~~~~~-~-~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~~-~~~ 82 (360)
T d1k32a3 7 AEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVLK-V-PEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAE-KFE 82 (360)
T ss_dssp EEEEEECGGGCEEEEE-TTEEEEECTTSSBEEE-C-SCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCEE-ECC
T ss_pred cccccCCCCCEEEEEE-CCeEEEEECCCCcEEE-c-cCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCcEE-Eee
Confidence 456999 999999987 5899999998887665 3 5999999999999999998877653 7999999887655 567
Q ss_pred ccCCceeEEEECCCCCEEEEecCCCcEEEEEecCCCCCCcchhhhhHhhhhcCCceeEEEEeecccccccccCceeeEEE
Q psy18231 246 EHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHLSNGLLTKLVF 325 (540)
Q Consensus 246 ~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (540)
.|...|.+++|+|++++|++++.++.+++|++.+++..
T Consensus 83 ~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~------------------------------------------ 120 (360)
T d1k32a3 83 ENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPT------------------------------------------ 120 (360)
T ss_dssp CCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEE------------------------------------------
T ss_pred CCCceEEeeeecccccccceecccccccccccccccee------------------------------------------
Confidence 89999999999999999999999999999999877621
Q ss_pred eeeecccccceeeeeeccceeEEEeecccceecccccccccccchhhhhhcccccEEEEEecC--CeeEe----------
Q psy18231 326 AFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEARDSITSVHVSD--HEILT---------- 393 (540)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~--~~l~~---------- 393 (540)
..+..|...+.+++|+| ++|+.
T Consensus 121 ----------------------------------------------~~~~~~~~~~~~~~~spdg~~la~~~~~~~~~~~ 154 (360)
T d1k32a3 121 ----------------------------------------------VIERSREAMITDFTISDNSRFIAYGFPLKHGETD 154 (360)
T ss_dssp ----------------------------------------------EEEECSSSCCCCEEECTTSCEEEEEEEECSSTTC
T ss_pred ----------------------------------------------eeeecccccccchhhccceeeeeeecccccccee
Confidence 12334556666777777 55553
Q ss_pred eeCCCeEEEEeCCCCceEEeeeC-CceEEEEEecCCcEEEeecCCCeEEEEeccccchh-------hhhccCcCCcceEE
Q psy18231 394 ASLDCRIRRYDIRTGNLVTDYVG-EPIVDACFTRDCQCILTCSTDECLRLFDKATGELL-------EEYKGHKSGDFRIE 465 (540)
Q Consensus 394 ~~~dg~i~iwd~~~~~~~~~~~~-~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~-------~~~~~~~~~v~~~~ 465 (540)
+..++.+++||+.+++....... ..+..++|+|+|++|++++.++.+.+||....... ..+..|......+
T Consensus 155 ~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~s~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~- 233 (360)
T d1k32a3 155 GYVMQAIHVYDMEGRKIFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPT- 233 (360)
T ss_dssp SCCEEEEEEEETTTTEEEECSCSSSBEEEEEECTTSCEEEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGG-
T ss_pred eccccceeeeccccCceeeecccccccccccccCCCCEEEEEeCCCceEcccccccceeeccccceEEEecccCccccc-
Confidence 34456799999998877655543 67889999999999999999999999997654321 2223344444444
Q ss_pred EEecCCCCeEEEeeCCCc-----EEEEEecCCcceeEEEecccceeeeEEEEcC---CCcEEEeec-CCeeEEEEcccc
Q psy18231 466 CCLDSKDSQIFCGSSDGK-----IYKWQLVDSSQISTLIHSVGKAVVNSLCSHP---TRKHIMSAC-GNNVKLWTAEED 535 (540)
Q Consensus 466 ~~~s~~~~~l~s~s~dg~-----i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~---d~~~l~s~~-d~~i~iw~~~~~ 535 (540)
.+++++..++++..+.. +..+++..+... .+. .+.+.+..+.+.+ ++.++++++ ++.|++||++++
T Consensus 234 -~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~ 308 (360)
T d1k32a3 234 -KLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYR-MII--PLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTR 308 (360)
T ss_dssp -GCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEE-EEE--ECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTC
T ss_pred -eECCCcCcccccceeecccccceeecccCcCcee-Eee--ecCCCceEEEEEecCCCeeEEEecCCCCEEEEEECCCC
Confidence 67788877776654432 444444444433 333 3445555555544 445778888 999999998764
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=99.93 E-value=6.3e-25 Score=206.13 Aligned_cols=272 Identities=10% Similarity=0.041 Sum_probs=190.4
Q ss_pred EEeCCCCCEEEEeeCCCcEEEEcCCCCeeEEEee-cCCcceeEEEEeeCCCeE-EEeeCCCeEEEEEcCCCceeEecccc
Q psy18231 170 TRFPVDGSYCLTCGSDKKIKLWNPYRNLLLKTYG-GHAHEVNDATAACDSSQI-ASGASDKSVILWEVTTGQPVRRWREH 247 (540)
Q Consensus 170 v~~spdg~~lat~~~dg~i~iwd~~~~~~~~~~~-~h~~~v~~l~~sp~~~~l-~s~s~dg~i~iwd~~~~~~~~~~~~h 247 (540)
++|++++++|++++.+++|.+||+.+++.+.+++ .|...+.+++|+|||+++ ++++.++.|.+||+.+++.+..+...
T Consensus 2 ~a~~~~~~~l~~~~~~~~v~v~D~~t~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~~~~~ 81 (346)
T d1jmxb_ 2 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLS 81 (346)
T ss_dssp CCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESC
T ss_pred ccCCCCCcEEEEEcCCCEEEEEECCCCCEEEEEEcCCCCCcceEEECCCCCEEEEEECCCCcEEEEeCccCeeeeeeccc
Confidence 4789999999999999999999999999999887 456678999999999987 55667899999999999888765432
Q ss_pred ------CCceeEEEECCCCCEEEEecC------------CCcEEEEEecCCCCCCcchhhhhHhhhhcCCceeEEEEeec
Q psy18231 248 ------ASKVTCVKFNEDSSVVISGSQ------------DNTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVK 309 (540)
Q Consensus 248 ------~~~v~~~~~~~~~~~l~s~~~------------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (540)
...+..++|+|||+++++++. ++.+.+|+..+++.....
T Consensus 82 ~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~----------------------- 138 (346)
T d1jmxb_ 82 SVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPV----------------------- 138 (346)
T ss_dssp CSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCS-----------------------
T ss_pred ccccccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEecccceeeeEE-----------------------
Confidence 234678999999999887753 455666666554310000
Q ss_pred ccccccccCceeeEEEeeeecccccceeeeeeccceeEEEeecccceecccccccccccchhhhhhcccccEEEEEecC-
Q psy18231 310 STKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEARDSITSVHVSD- 388 (540)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~- 388 (540)
........+..+.+++
T Consensus 139 ---------------------------------------------------------------~~~~~~~~~~~~~~~~~ 155 (346)
T d1jmxb_ 139 ---------------------------------------------------------------RTFPMPRQVYLMRAADD 155 (346)
T ss_dssp ---------------------------------------------------------------EEEECCSSCCCEEECTT
T ss_pred ---------------------------------------------------------------EeeeccCceEEEEecCC
Confidence 0000111222333344
Q ss_pred CeeEeeeCCCeEEEEeCCCCceEEeeeC-CceEEEEEecCC--------------------------cEEEeecCCCeEE
Q psy18231 389 HEILTASLDCRIRRYDIRTGNLVTDYVG-EPIVDACFTRDC--------------------------QCILTCSTDECLR 441 (540)
Q Consensus 389 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~i~~~~~sp~~--------------------------~~l~~~~~dg~i~ 441 (540)
..+++.+ +.+.+|++.+++.+..+.. .....+.++|++ ..++++..+..+.
T Consensus 156 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (346)
T d1jmxb_ 156 GSLYVAG--PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYL 233 (346)
T ss_dssp SCEEEES--SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEE
T ss_pred CEEEEeC--CcceEEEccCCCEEEEEecCCCccceEEeccccEEEEEecCCCceEeeeeeeeeccCceeEeeccCCceEE
Confidence 3333332 4477788777777666542 222233333333 3344455566788
Q ss_pred EEeccccchhhh-hccCcCCcceEEEEecCCCCeEEEeeCCCcEEEEEecCCcceeEEEecccceeeeEEEEcCCCcEEE
Q psy18231 442 LFDKATGELLEE-YKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIM 520 (540)
Q Consensus 442 i~d~~~~~~~~~-~~~~~~~v~~~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~ 520 (540)
+||..++..... +..|...+... .+++++.+++.... +.|++||..+++.+..+. +...+.+++|||||++|+
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~-~~v~v~d~~~~~~~~~~~---~~~~~~~va~s~DG~~l~ 307 (346)
T d1jmxb_ 234 SVDLKTGKTHTQEFADLTELYFTG--LRSPKDPNQIYGVL-NRLAKYDLKQRKLIKAAN---LDHTYYCVAFDKKGDKLY 307 (346)
T ss_dssp EEETTTCCEEEEEEEECSSCEEEE--EECSSCTTEEEEEE-SEEEEEETTTTEEEEEEE---CSSCCCEEEECSSSSCEE
T ss_pred EEECCCCceEEEEeecccceeEEE--EEeCCCCEEEEecC-CeEEEEECCCCcEEEEEc---CCCCEEEEEEcCCCCEEE
Confidence 888887765433 34455555444 78888888887765 579999999999988886 345699999999999999
Q ss_pred eec-CCeeEEEEcccc
Q psy18231 521 SAC-GNNVKLWTAEED 535 (540)
Q Consensus 521 s~~-d~~i~iw~~~~~ 535 (540)
+++ |+.|++||+++.
T Consensus 308 v~~~d~~v~v~D~~t~ 323 (346)
T d1jmxb_ 308 LGGTFNDLAVFNPDTL 323 (346)
T ss_dssp EESBSSEEEEEETTTT
T ss_pred EEeCCCcEEEEECccC
Confidence 999 999999999865
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=99.92 E-value=8.2e-23 Score=187.55 Aligned_cols=264 Identities=10% Similarity=0.076 Sum_probs=204.5
Q ss_pred ccccceeeeecccccce--eeeeecCeEEEEeCCCCCEEE-EeeCCCcEEEEcCCCCeeEEEeecCCcceeEEEEeeCCC
Q psy18231 143 LPKEWSIRVYRPLTVNR--ELFVLSGLMHTRFPVDGSYCL-TCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSS 219 (540)
Q Consensus 143 ~~~~~~i~~~~~~~~~~--~~~h~~~v~~v~~spdg~~la-t~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~ 219 (540)
...+.+|.+|+..+.+. .+.....+..++|+|||++|+ +++.++.|++||+.+++.+.++..|.. +..++|++++.
T Consensus 8 ~~~~~~v~v~D~~t~~~~~~i~~g~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~~~~~-~~~~~~~~~~~ 86 (301)
T d1l0qa2 8 NSESDNISVIDVTSNKVTATIPVGSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGSS-PQGVAVSPDGK 86 (301)
T ss_dssp ETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSSS-EEEEEECTTSS
T ss_pred ECCCCEEEEEECCCCeEEEEEECCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCceeeeeecccc-ccccccccccc
Confidence 45678899999888653 334556789999999999885 666789999999999999999987654 68899999998
Q ss_pred eEE-EeeCCCeEEEEEcCCCceeEeccccCCceeEEEECCCCCEEE-EecCCCcEEEEEecCCCCCCcchhhhhHhhhhc
Q psy18231 220 QIA-SGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVI-SGSQDNTVMMWDVKSRSHHPIQVRCLNEALKEA 297 (540)
Q Consensus 220 ~l~-s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~-s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 297 (540)
.++ ++..++.+.+|+..+++....+.. .....++.|+|++..++ ++..++.+.+|+..+....
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~-------------- 151 (301)
T d1l0qa2 87 QVYVTNMASSTLSVIDTTSNTVAGTVKT-GKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVI-------------- 151 (301)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEEEC-SSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEE--------------
T ss_pred cccccccccceeeecccccceeeeeccc-cccceEEEeecCCCeeeeeeccccceeeeecccccee--------------
Confidence 655 556678999999999988887754 45678899999998765 5566788999998776510
Q ss_pred CCceeEEEEeecccccccccCceeeEEEeeeecccccceeeeeeccceeEEEeecccceecccccccccccchhhhhhcc
Q psy18231 298 RDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEA 377 (540)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 377 (540)
....+
T Consensus 152 ---------------------------------------------------------------------------~~~~~ 156 (301)
T d1l0qa2 152 ---------------------------------------------------------------------------NTVSV 156 (301)
T ss_dssp ---------------------------------------------------------------------------EEEEC
T ss_pred ---------------------------------------------------------------------------eeccc
Confidence 00112
Q ss_pred cccEEEEEecC--CeeEeee-CCCeEEEEeCCCCceEEeeeC-CceEEEEEecCCcEEEeec---CCCeEEEEeccccch
Q psy18231 378 RDSITSVHVSD--HEILTAS-LDCRIRRYDIRTGNLVTDYVG-EPIVDACFTRDCQCILTCS---TDECLRLFDKATGEL 450 (540)
Q Consensus 378 ~~~v~~l~~~~--~~l~~~~-~dg~i~iwd~~~~~~~~~~~~-~~i~~~~~sp~~~~l~~~~---~dg~i~i~d~~~~~~ 450 (540)
...+..+.+++ ..++++. .++.+.+|+....+....... .....++++++++.+++++ .++.|++||..+++.
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t~~~ 236 (301)
T d1l0qa2 157 GRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKI 236 (301)
T ss_dssp CSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEE
T ss_pred CCCceEEEeeccccceeeecccccccccccccceeeeecccccCCcceeeccccccccccccccceeeeeeeeecCCCeE
Confidence 33456777877 5555555 457788888888877766654 5678899999999887654 346899999999998
Q ss_pred hhhhccCcCCcceEEEEecCCCCeE-EEeeCCCcEEEEEecCCcceeEEEe
Q psy18231 451 LEEYKGHKSGDFRIECCLDSKDSQI-FCGSSDGKIYKWQLVDSSQISTLIH 500 (540)
Q Consensus 451 ~~~~~~~~~~v~~~~~~~s~~~~~l-~s~s~dg~i~iwd~~~~~~~~~~~~ 500 (540)
+..+..+. .+..+ +|+|||++| ++++.|++|++||+.+++.+.++..
T Consensus 237 ~~~~~~~~-~~~~v--a~spdg~~l~va~~~~~~i~v~D~~t~~~~~~~~v 284 (301)
T d1l0qa2 237 TARIPVGP-DPAGI--AVTPDGKKVYVALSFCNTVSVIDTATNTITATMAV 284 (301)
T ss_dssp EEEEECCS-SEEEE--EECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC
T ss_pred EEEEcCCC-CEEEE--EEeCCCCEEEEEECCCCeEEEEECCCCeEEEEEeC
Confidence 88776554 34555 899999986 5778899999999999999998873
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.92 E-value=2.5e-24 Score=208.16 Aligned_cols=283 Identities=11% Similarity=0.058 Sum_probs=195.0
Q ss_pred eCCCCC--EEEEeeCCCcEEEEcCCCCeeEEEeecCCcceeEEEEeeCCCeEEEeeCCCeEEEEEcCCCceeEe-----c
Q psy18231 172 FPVDGS--YCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPVRR-----W 244 (540)
Q Consensus 172 ~spdg~--~lat~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~-----~ 244 (540)
++.|.+ ++++.+.||+|+|||+.+++.+.++..|. .+..++|||||++|++++.|++|++||+.+++.... .
T Consensus 26 ~~~d~~~~~~V~~~~dg~v~vwD~~t~~~~~~l~~g~-~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~ 104 (426)
T d1hzua2 26 NDLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGY-AVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIG 104 (426)
T ss_dssp SCCCGGGEEEEEETTTTEEEEEETTTCSEEEEEECCS-SEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECC
T ss_pred ccCCCCeEEEEEEcCCCEEEEEECCCCcEEEEEeCCC-CeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeEEEEEeCC
Confidence 444433 45678889999999999999999999764 589999999999999999999999999999875432 2
Q ss_pred cccCCceeEEEECCCCCEEEEe-cCCCcEEEEEecCCCCCCcchhhhhHhhhhcCCceeEEEEeecccccccccCceeeE
Q psy18231 245 REHASKVTCVKFNEDSSVVISG-SQDNTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHLSNGLLTKL 323 (540)
Q Consensus 245 ~~h~~~v~~~~~~~~~~~l~s~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (540)
.+|.+.+.+++|+|||++++++ ..++.+++||..++........
T Consensus 105 ~~~~~~~~s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~----------------------------------- 149 (426)
T d1hzua2 105 IEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVST----------------------------------- 149 (426)
T ss_dssp SEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEEC-----------------------------------
T ss_pred CCCcceEEeeeecCCCCEEEEeecCCCeEEEEcCCccceeEEeec-----------------------------------
Confidence 3567777888899999987554 5789999999988762111100
Q ss_pred EEeeeecccccceeeeeeccceeEEEeecccceecccccccccccchhhhhhcccccEEEEEecC--Ce-eEeeeCCCeE
Q psy18231 324 VFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEARDSITSVHVSD--HE-ILTASLDCRI 400 (540)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~--~~-l~~~~~dg~i 400 (540)
. .. ........+......+..++ .. +.+....+.+
T Consensus 150 -----------------------------~--~~-----------~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~~~i 187 (426)
T d1hzua2 150 -----------------------------R--GM-----------TVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKV 187 (426)
T ss_dssp -----------------------------C--EE-----------CSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEE
T ss_pred -----------------------------c--CC-----------CccceeecCCCceeEEEECCCCCEEEEecCCCCeE
Confidence 0 00 00000111233344445554 33 3334445667
Q ss_pred EEEeCCCCceE--Eee-eCCceEEEEEecCCcEEEeec-CCCeEEEEeccccchhhhhccCcCC--cceEEEEecCCCC-
Q psy18231 401 RRYDIRTGNLV--TDY-VGEPIVDACFTRDCQCILTCS-TDECLRLFDKATGELLEEYKGHKSG--DFRIECCLDSKDS- 473 (540)
Q Consensus 401 ~iwd~~~~~~~--~~~-~~~~i~~~~~sp~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~--v~~~~~~~s~~~~- 473 (540)
.+++....... ... .+..+..+.|+|++++++++. .+..+.+++..+++.+......... .... .+..++.
T Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 265 (426)
T d1hzua2 188 LLVNYKDIDNLTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGA--NFVHPKYG 265 (426)
T ss_dssp EEEECSSSSSCEEEEEECCSSEEEEEECTTSCEEEEEETTCSEEEEEETTTTEEEEEEECSSCCCCSCCE--EEEETTTE
T ss_pred EEEEeccccceeeEEeccCCccEeeeECCCCcEEEeeeecccceeeeecccccEEEEeccCCccccccee--eeecCCCC
Confidence 77776655432 222 346789999999999877765 4677999999998877665433222 2222 2222222
Q ss_pred e--EEEeeCCCcEEEEEecC-------CcceeEEEecccceeeeEEEEcCCCcEEE-------eec-CCeeEEEEccccc
Q psy18231 474 Q--IFCGSSDGKIYKWQLVD-------SSQISTLIHSVGKAVVNSLCSHPTRKHIM-------SAC-GNNVKLWTAEEDY 536 (540)
Q Consensus 474 ~--l~s~s~dg~i~iwd~~~-------~~~~~~~~~~~~~~~v~~l~~s~d~~~l~-------s~~-d~~i~iw~~~~~~ 536 (540)
. .++.+.|+.+.+|+... ++....+. +|...+..++|+||+++|+ +++ |++|+|||++++.
T Consensus 266 ~~~~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~l~--g~~~~v~~v~~sPdg~~l~v~~~~~~s~~~~~tv~vwd~~t~~ 343 (426)
T d1hzua2 266 PVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQ--GQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLD 343 (426)
T ss_dssp EEEEEECTTTCEEEEEECCTTTCTTTBTSEEEEEE--CSSSCCCCEECCTTCSEEEECCTTCSSHHHHTCEEEEETTCTT
T ss_pred ceEEeccCCCceEEEeeccccccccccceEeEEEe--cCCCceeEEEcCCCCceEEEeecCCCCcccCCEEEEEECCCCC
Confidence 2 33445688888888654 36677787 8999999999999999999 456 8999999997653
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.91 E-value=4.7e-23 Score=192.42 Aligned_cols=261 Identities=14% Similarity=0.074 Sum_probs=189.6
Q ss_pred CEEEEeeCCCcEEEEcCCCCeeEEEeecC--CcceeEEEEeeCCCeE-EEeeCCCeEEEEEcCCCceeEeccccC-----
Q psy18231 177 SYCLTCGSDKKIKLWNPYRNLLLKTYGGH--AHEVNDATAACDSSQI-ASGASDKSVILWEVTTGQPVRRWREHA----- 248 (540)
Q Consensus 177 ~~lat~~~dg~i~iwd~~~~~~~~~~~~h--~~~v~~l~~sp~~~~l-~s~s~dg~i~iwd~~~~~~~~~~~~h~----- 248 (540)
+|+++++.|++|.|||+++++.+.++..+ ...+.+++|+|||+++ ++++.++.|.+||+.+++.+..+..+.
T Consensus 2 ~~~vt~~~d~~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~ 81 (337)
T d1pbyb_ 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERV 81 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEE
T ss_pred eEEEEEcCCCEEEEEECCCCeEEEEEECCCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEecCCCcccc
Confidence 58999999999999999999999988653 4567899999999987 566789999999999999988776543
Q ss_pred CceeEEEECCCCCEEEEecCC------------CcEEEEEecCCCCCCcchhhhhHhhhhcCCceeEEEEeecccccccc
Q psy18231 249 SKVTCVKFNEDSSVVISGSQD------------NTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHLS 316 (540)
Q Consensus 249 ~~v~~~~~~~~~~~l~s~~~d------------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (540)
..+..++|+|+++++++++.+ +.+.+||..+++.
T Consensus 82 ~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~---------------------------------- 127 (337)
T d1pbyb_ 82 KSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSR---------------------------------- 127 (337)
T ss_dssp ECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEE----------------------------------
T ss_pred cceeeEEEcCCCcEEEEeecCCcceeeeccccccceeeccccCCeE----------------------------------
Confidence 345689999999999888654 4445555444321
Q ss_pred cCceeeEEEeeeecccccceeeeeeccceeEEEeecccceecccccccccccchhhhhhcccccEEEEEecC--CeeEee
Q psy18231 317 NGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEARDSITSVHVSD--HEILTA 394 (540)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~--~~l~~~ 394 (540)
. ....+...+..+++++ .+++++
T Consensus 128 ------------------------------------------------------~-~~~~~~~~~~~~~~s~dg~~l~~~ 152 (337)
T d1pbyb_ 128 ------------------------------------------------------R-KAFEAPRQITMLAWARDGSKLYGL 152 (337)
T ss_dssp ------------------------------------------------------E-EEEECCSSCCCEEECTTSSCEEEE
T ss_pred ------------------------------------------------------E-EeccccCCceEEEEcCCCCEEEEE
Confidence 0 0011234456778887 667776
Q ss_pred eCCCeEEEEeCCCCceEEeeeCC-ceE------------------------EEEEecCCcEEEeecCCCeEEEEeccccc
Q psy18231 395 SLDCRIRRYDIRTGNLVTDYVGE-PIV------------------------DACFTRDCQCILTCSTDECLRLFDKATGE 449 (540)
Q Consensus 395 ~~dg~i~iwd~~~~~~~~~~~~~-~i~------------------------~~~~sp~~~~l~~~~~dg~i~i~d~~~~~ 449 (540)
+. .+.+||..+++....+..+ ... ......+......+..++.+.+||..+++
T Consensus 153 ~~--~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (337)
T d1pbyb_ 153 GR--DLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGE 230 (337)
T ss_dssp SS--SEEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCC
T ss_pred cC--CcceeeeecCcEEEEeecCCccccceecCCcceeeccccccceeeeeeeeeeeccceeeecccCccEEEEEcCCCc
Confidence 54 4778999998877666421 001 11111222233344456678899988876
Q ss_pred hhhh-hccCcCCcceEEEEecCCCCeEEEeeCCCcEEEEEecCCcceeEEEecccceeeeEEEEcCCCcEEEeec-CCee
Q psy18231 450 LLEE-YKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC-GNNV 527 (540)
Q Consensus 450 ~~~~-~~~~~~~v~~~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~-d~~i 527 (540)
.... +..+....... .+++++.+++.+ ++.|++||+.+++.+..+. +...+.+++|+|||++|++++ |++|
T Consensus 231 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~--~~~i~v~d~~~~~~~~~~~---~~~~~~~~~~s~dG~~l~v~~~~~~i 303 (337)
T d1pbyb_ 231 MAMREVRIMDVFYFST--AVNPAKTRAFGA--YNVLESFDLEKNASIKRVP---LPHSYYSVNVSTDGSTVWLGGALGDL 303 (337)
T ss_dssp EEEEEEEECSSCEEEE--EECTTSSEEEEE--ESEEEEEETTTTEEEEEEE---CSSCCCEEEECTTSCEEEEESBSSEE
T ss_pred EEEEEecCCCcceEEE--EecccceEEEEc--cccEEEEECCCCcEEEEEc---CCCCEEEEEECCCCCEEEEEeCCCcE
Confidence 5443 33344444333 788999888766 4889999999999999886 556789999999999999999 9999
Q ss_pred EEEEcccc
Q psy18231 528 KLWTAEED 535 (540)
Q Consensus 528 ~iw~~~~~ 535 (540)
++||+++.
T Consensus 304 ~v~D~~t~ 311 (337)
T d1pbyb_ 304 AAYDAETL 311 (337)
T ss_dssp EEEETTTC
T ss_pred EEEECCCC
Confidence 99999864
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.91 E-value=8.5e-23 Score=190.62 Aligned_cols=289 Identities=10% Similarity=0.055 Sum_probs=203.2
Q ss_pred hhhcccccceeeeecccccceeee-----eecCeEEEEeCCCCCEEE-EeeCCCcEEEEcCCCCeeEEEeecCC-----c
Q psy18231 139 ILYELPKEWSIRVYRPLTVNRELF-----VLSGLMHTRFPVDGSYCL-TCGSDKKIKLWNPYRNLLLKTYGGHA-----H 207 (540)
Q Consensus 139 ~~~~~~~~~~i~~~~~~~~~~~~~-----h~~~v~~v~~spdg~~la-t~~~dg~i~iwd~~~~~~~~~~~~h~-----~ 207 (540)
.++..+.+.+|++|+..+...... +...+.+++|+|||++|+ +++.++.|.+||+.+++.+..+..+. .
T Consensus 3 ~~vt~~~d~~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~ 82 (337)
T d1pbyb_ 3 YILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVK 82 (337)
T ss_dssp EEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEE
T ss_pred EEEEEcCCCEEEEEECCCCeEEEEEECCCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEecCCCccccc
Confidence 345667889999999988653321 335678999999999875 66779999999999999998887654 3
Q ss_pred ceeEEEEeeCCCeEEEee------------CCCeEEEEEcCCCceeEeccccCCceeEEEECCCCCEEEEecCCCcEEEE
Q psy18231 208 EVNDATAACDSSQIASGA------------SDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMW 275 (540)
Q Consensus 208 ~v~~l~~sp~~~~l~s~s------------~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iw 275 (540)
.+..++|+|+++++++++ .++.+.+||..+++....+.. ...+..++|+|+++++++++. .+.+|
T Consensus 83 ~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~--~~~~~ 159 (337)
T d1pbyb_ 83 SLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PRQITMLAWARDGSKLYGLGR--DLHVM 159 (337)
T ss_dssp CTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CSSCCCEEECTTSSCEEEESS--SEEEE
T ss_pred ceeeEEEcCCCcEEEEeecCCcceeeeccccccceeeccccCCeEEEeccc-cCCceEEEEcCCCCEEEEEcC--Cccee
Confidence 456799999999998776 357899999999998887764 556889999999999999875 47789
Q ss_pred EecCCCCCCcchhhhhHhhhhcCCceeEEEEeecccccccccCceeeEEEeeeecccccceeeeeeccceeEEEeecccc
Q psy18231 276 DVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGS 355 (540)
Q Consensus 276 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (540)
|..+++..... ......... ....++..
T Consensus 160 d~~~~~~~~~~--~~~~~~~~~------------------------------------------~~~~~~~~-------- 187 (337)
T d1pbyb_ 160 DPEAGTLVEDK--PIQSWEAET------------------------------------------YAQPDVLA-------- 187 (337)
T ss_dssp ETTTTEEEEEE--CSTTTTTTT------------------------------------------BCCCBCCC--------
T ss_pred eeecCcEEEEe--ecCCccccc------------------------------------------eecCCcce--------
Confidence 98776521100 000000000 00000000
Q ss_pred eecccccccccccchhhhhhcccccEEEEE--ecCCeeEeeeCCCeEEEEeCCCCceEEeee---CCceEEEEEecCCcE
Q psy18231 356 TQIGDVTPISIHNSCFQALKEARDSITSVH--VSDHEILTASLDCRIRRYDIRTGNLVTDYV---GEPIVDACFTRDCQC 430 (540)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~--~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~---~~~i~~~~~sp~~~~ 430 (540)
.+ ......+........ +.......+..++.+.+||..+++...... ......+.++|++.+
T Consensus 188 --~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (337)
T d1pbyb_ 188 --VW-----------NQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTR 254 (337)
T ss_dssp --CC-----------CCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSE
T ss_pred --ee-----------ccccccceeeeeeeeeeeccceeeecccCccEEEEEcCCCcEEEEEecCCCcceEEEEecccceE
Confidence 00 000000011111111 112445556667789999999887654332 356888899999999
Q ss_pred EEeecCCCeEEEEeccccchhhhhccCcCCcceEEEEecCCCCeEEEeeCCCcEEEEEecCCcceeEEEe
Q psy18231 431 ILTCSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIH 500 (540)
Q Consensus 431 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~ 500 (540)
++.+ ++.|++||+.+++.+..+. +...+.++ +|+|||++|++++.|++|++||..+++.+.++..
T Consensus 255 ~~~~--~~~i~v~d~~~~~~~~~~~-~~~~~~~~--~~s~dG~~l~v~~~~~~i~v~D~~t~~~v~~i~~ 319 (337)
T d1pbyb_ 255 AFGA--YNVLESFDLEKNASIKRVP-LPHSYYSV--NVSTDGSTVWLGGALGDLAAYDAETLEKKGQVDL 319 (337)
T ss_dssp EEEE--ESEEEEEETTTTEEEEEEE-CSSCCCEE--EECTTSCEEEEESBSSEEEEEETTTCCEEEEEEC
T ss_pred EEEc--cccEEEEECCCCcEEEEEc-CCCCEEEE--EECCCCCEEEEEeCCCcEEEEECCCCcEEEEEEC
Confidence 8766 5889999999999888775 44556666 8999999999999999999999999999999874
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=99.91 E-value=3.6e-23 Score=199.39 Aligned_cols=270 Identities=12% Similarity=0.062 Sum_probs=180.4
Q ss_pred EEEEeeCCCcEEEEcCCCCeeEEEeecCCcceeEEEEeeCCCeEEEeeCCCeEEEEEcCCCcee--E---eccccCCcee
Q psy18231 178 YCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPV--R---RWREHASKVT 252 (540)
Q Consensus 178 ~lat~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~--~---~~~~h~~~v~ 252 (540)
++++.+.+|+|.|||..+++++..+..| ..+..++|||||+++++++.|++|++||+.+++.. . ...+|.+.+.
T Consensus 34 ~~v~~~d~g~v~v~D~~t~~v~~~~~~g-~~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~~~~~ 112 (432)
T d1qksa2 34 FSVTLRDAGQIALIDGSTYEIKTVLDTG-YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIET 112 (432)
T ss_dssp EEEEETTTTEEEEEETTTCCEEEEEECS-SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEEE
T ss_pred EEEEEcCCCEEEEEECCCCcEEEEEeCC-CCeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCCCCCCeEE
Confidence 4578899999999999999999999876 46999999999999999999999999999887642 2 2335667777
Q ss_pred EEEECCCCCEE-EEecCCCcEEEEEecCCCCCCcchhhhhHhhhhcCCceeEEEEeecccccccccCceeeEEEeeeecc
Q psy18231 253 CVKFNEDSSVV-ISGSQDNTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKY 331 (540)
Q Consensus 253 ~~~~~~~~~~l-~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (540)
+..|+|||++| ++++.+++|++||..+++.......
T Consensus 113 s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~------------------------------------------- 149 (432)
T d1qksa2 113 SKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQST------------------------------------------- 149 (432)
T ss_dssp CCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEEC-------------------------------------------
T ss_pred ecccCCCCCEEEEEcCCCCeEEEEeCccccceeeecc-------------------------------------------
Confidence 77889999976 6788899999999988762111000
Q ss_pred cccceeeeeeccceeEEEeecccceecccccccccccchhhhhhcccccEEEEEecC---CeeEeeeCCCeEEEEeCCCC
Q psy18231 332 LNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEARDSITSVHVSD---HEILTASLDCRIRRYDIRTG 408 (540)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~---~~l~~~~~dg~i~iwd~~~~ 408 (540)
... ........+......+.+++ .++++...++.|.+||..+.
T Consensus 150 -----------------------~~~-----------~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i~~~d~~~~ 195 (432)
T d1qksa2 150 -----------------------RGM-----------TYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDL 195 (432)
T ss_dssp -----------------------CEE-----------CTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCS
T ss_pred -----------------------CCc-----------cccceeccCCCceeEEEECCCCCEEEEEEccCCeEEEEEccCC
Confidence 000 00001112344556677776 34566677899999998877
Q ss_pred ceE--Eeee-CCceEEEEEecCCcEEEeecC-CCeEEEEeccccchhhhhcc-----CcCCcce----------------
Q psy18231 409 NLV--TDYV-GEPIVDACFTRDCQCILTCST-DECLRLFDKATGELLEEYKG-----HKSGDFR---------------- 463 (540)
Q Consensus 409 ~~~--~~~~-~~~i~~~~~sp~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~-----~~~~v~~---------------- 463 (540)
+.. ..+. +.....++|+|+|+++++++. ++.+.++|..+++.+..+.. |......
T Consensus 196 ~~~~~~~i~~g~~~~~~~~spdg~~~~va~~~~~~v~v~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~lg 275 (432)
T d1qksa2 196 NNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMG 275 (432)
T ss_dssp SEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEETTTEEEEEEEBSS
T ss_pred CcceEEEEcccCccccceECCCCCEEEEeccccceEEEeecccceEEEEeccCccccccCcccceecCCCCceecccccC
Confidence 643 3333 467889999999997766654 56788888877655433221 1111110
Q ss_pred ---------------------EEEEecCCCCeEEEeeCCCcEEEEEecCCcceeEEEecccceeeeEEEEcCCCcEEEee
Q psy18231 464 ---------------------IECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSA 522 (540)
Q Consensus 464 ---------------------~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~ 522 (540)
....+++++..+++++.+++.++|+..+.. .|.....++++ ||++.|+++
T Consensus 276 ~~~v~~~~~~~~~~~~~~~~v~~~~~~~~g~~~~~~s~p~~~~lw~~~~~~--------~~~~~~~sv~v-pDg~~la~~ 346 (432)
T d1qksa2 276 DDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLN--------PEAEISGSVAV-FDIKAMTGD 346 (432)
T ss_dssp SSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTC--------SSHHHHTCEEE-EEGGGCCCS
T ss_pred CceEEecccccccccccccEEEEEEEcCCCCeEEEEecCCccceeecccCC--------CCCCeeeEEEE-Eechhhccc
Confidence 111344444455555555555555433221 22233344554 889999999
Q ss_pred c-CCeeEEEEccc
Q psy18231 523 C-GNNVKLWTAEE 534 (540)
Q Consensus 523 ~-d~~i~iw~~~~ 534 (540)
+ |+.+++|++.+
T Consensus 347 s~d~~~k~w~~~~ 359 (432)
T d1qksa2 347 GSDPEFKTLPIAE 359 (432)
T ss_dssp SSCCCEEEECHHH
T ss_pred ccCCceEeccccc
Confidence 9 99999998754
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=99.89 E-value=1.5e-20 Score=178.06 Aligned_cols=277 Identities=9% Similarity=-0.041 Sum_probs=193.2
Q ss_pred eeecCeEEEEeCCCCCEEEEe-----eCCCcEEEEcCCCCeeEEEeecCCcceeEEEEeeCCCeEEEee----------C
Q psy18231 162 FVLSGLMHTRFPVDGSYCLTC-----GSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGA----------S 226 (540)
Q Consensus 162 ~h~~~v~~v~~spdg~~lat~-----~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s----------~ 226 (540)
.+.+++.+++++|||+++++. +..+.|.+||..+++.+.++..+... .++|+|||++|++++ .
T Consensus 18 ~~~~p~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~~~~~~~~--~~a~SpDG~~l~va~~~~~~~~~~~~ 95 (373)
T d2madh_ 18 AADGPTNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKR 95 (373)
T ss_pred cCCCCccccccCCCCCEEEEEcccccCCCceEEEEECCCCCEEEEEeCCCCc--cEEEcCCCCEEEEEeecCCccccccc
Confidence 477889999999999998764 23467999999999999998766544 799999999998875 4
Q ss_pred CCeEEEEEcCCCceeEeccccCCce-------eEEEECCCCCEEEEe--cCCCcEEEEEecCCCCCCcchhhhhHhhhhc
Q psy18231 227 DKSVILWEVTTGQPVRRWREHASKV-------TCVKFNEDSSVVISG--SQDNTVMMWDVKSRSHHPIQVRCLNEALKEA 297 (540)
Q Consensus 227 dg~i~iwd~~~~~~~~~~~~h~~~v-------~~~~~~~~~~~l~s~--~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 297 (540)
++.|.+||+.+++.+..+..+.... ..+.|+++++.++.. ..++.+.+|+....+.
T Consensus 96 ~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~--------------- 160 (373)
T d2madh_ 96 TDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVVQGGSSD--------------- 160 (373)
T ss_pred ceEEEEEECCCCcEEEEEecCCcceeEeccCCCcEEEEeCCCcEEEEEEcCCCceEEeeccCCeE---------------
Confidence 5789999999999988877665544 345666776655443 3345666666654431
Q ss_pred CCceeEEEEeecccccccccCceeeEEEeeeecccccceeeeeeccceeEEEeecccceecccccccccccchhhhhhcc
Q psy18231 298 RDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEA 377 (540)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 377 (540)
..+
T Consensus 161 -----------------------------------------------------------------------------~~~ 163 (373)
T d2madh_ 161 -----------------------------------------------------------------------------DQL 163 (373)
T ss_pred -----------------------------------------------------------------------------EEE
Confidence 112
Q ss_pred cccEEEEEecC---CeeEeeeCCCeEEEEeCCCCceEEeeeC--------CceEEEEEecCCcEEEeecCCCeEEEEecc
Q psy18231 378 RDSITSVHVSD---HEILTASLDCRIRRYDIRTGNLVTDYVG--------EPIVDACFTRDCQCILTCSTDECLRLFDKA 446 (540)
Q Consensus 378 ~~~v~~l~~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~~--------~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~ 446 (540)
.....++.+++ ..+++.+.|+.+.+||...++....... .......+++++.++ ..+.++.+.+|+..
T Consensus 164 ~~~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~~ 242 (373)
T d2madh_ 164 LSSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIV-WPVYSGKILQADIS 242 (373)
T ss_pred eccceeEEEecCCCcEEEEEcCCCeEEEEEcCCceeeEEEeeeccccCccceeeeEEECCCceEE-EecCCceEEEEEcC
Confidence 22344566665 5567889999999999998877665532 123445566666544 55678889999887
Q ss_pred ccchh--hhhccCcC--------CcceEEEEecCCCCe----------EEEeeCCCcEEEEEecCCcceeEEEeccccee
Q psy18231 447 TGELL--EEYKGHKS--------GDFRIECCLDSKDSQ----------IFCGSSDGKIYKWQLVDSSQISTLIHSVGKAV 506 (540)
Q Consensus 447 ~~~~~--~~~~~~~~--------~v~~~~~~~s~~~~~----------l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~ 506 (540)
+.... .....+.. +......++++++.. +++...++.+.+||..+++.+..+. +...
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~d~~t~~~~~~~~---~~~~ 319 (373)
T d2madh_ 243 AAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQIS---LGHD 319 (373)
T ss_pred CCeEEEEEeeccccCcEEeeeeccCcceeeEEecCCCeEEEecCCCceEEeecCCCeEEEEECCCCcEEEEec---CCCC
Confidence 65432 11111111 001111245555544 4455677889999999999998885 5667
Q ss_pred eeEEEEcCCCcE--EEeec-CCeeEEEEccccc
Q psy18231 507 VNSLCSHPTRKH--IMSAC-GNNVKLWTAEEDY 536 (540)
Q Consensus 507 v~~l~~s~d~~~--l~s~~-d~~i~iw~~~~~~ 536 (540)
+..++|+|||+. +++++ |++|++||+.++.
T Consensus 320 ~~~~a~spDG~~~l~vt~~~d~~v~v~D~~tg~ 352 (373)
T d2madh_ 320 VDAISVAQDGGPDLYALSAGTEVLHIYDAGAGD 352 (373)
T ss_pred eeEEEECCCCCEEEEEEeCCCCeEEEEECCCCC
Confidence 899999999984 45677 9999999998764
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=99.87 E-value=6.6e-20 Score=170.54 Aligned_cols=270 Identities=9% Similarity=0.150 Sum_probs=180.4
Q ss_pred EEEeeCCCcEEEEcCCCCeeEEEe--ecCCcceeEEEEeeCCCeEEEe-eCCCeEEEEEcCCCceeEec---cccCCcee
Q psy18231 179 CLTCGSDKKIKLWNPYRNLLLKTY--GGHAHEVNDATAACDSSQIASG-ASDKSVILWEVTTGQPVRRW---REHASKVT 252 (540)
Q Consensus 179 lat~~~dg~i~iwd~~~~~~~~~~--~~h~~~v~~l~~sp~~~~l~s~-s~dg~i~iwd~~~~~~~~~~---~~h~~~v~ 252 (540)
+++++.|++|++|++.+...+..+ ..|.+.+..++|+|||++|+++ ..|+.|++|++........+ ..+...+.
T Consensus 7 ~v~~~~~~~I~v~~~~~~~~l~~~~~~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~~p~ 86 (333)
T d1ri6a_ 7 YIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLT 86 (333)
T ss_dssp EEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCCS
T ss_pred EEECCCCCcEEEEEEcCCCCeEEEEEEcCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeecccCCCce
Confidence 467778999999998765333322 3588999999999999998555 45899999999876543332 23455678
Q ss_pred EEEECCCCCEEEEecC-CCcEEEEEecCCCCCCcchhhhhHhhhhcCCceeEEEEeecccccccccCceeeEEEeeeecc
Q psy18231 253 CVKFNEDSSVVISGSQ-DNTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKY 331 (540)
Q Consensus 253 ~~~~~~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (540)
.++|+|||++|++++. ++.|.+|+..........
T Consensus 87 ~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~--------------------------------------------- 121 (333)
T d1ri6a_ 87 HISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVV--------------------------------------------- 121 (333)
T ss_dssp EEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEE---------------------------------------------
T ss_pred EEEEcCCCCEEeecccCCCceeeeccccccceecc---------------------------------------------
Confidence 8999999999998875 678999987765410000
Q ss_pred cccceeeeeeccceeEEEeecccceecccccccccccchhhhhhcccccEEEEEecC--CeeEeee-CCCeEEEEeCCCC
Q psy18231 332 LNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEARDSITSVHVSD--HEILTAS-LDCRIRRYDIRTG 408 (540)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~--~~l~~~~-~dg~i~iwd~~~~ 408 (540)
....+...+.++.+++ +.+++++ .+..|.+|+....
T Consensus 122 -----------------------------------------~~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~ 160 (333)
T d1ri6a_ 122 -----------------------------------------DVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDD 160 (333)
T ss_dssp -----------------------------------------EEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTT
T ss_pred -----------------------------------------cccCCCccceEEEeeecceeeeccccccceeeEEEeccC
Confidence 1122344556677777 5555544 5677999998765
Q ss_pred ceEEee--------eCCceEEEEEecCCcEEEeec-CCCeEEEEeccccchh----hhh----ccCcCCcceEEEEecCC
Q psy18231 409 NLVTDY--------VGEPIVDACFTRDCQCILTCS-TDECLRLFDKATGELL----EEY----KGHKSGDFRIECCLDSK 471 (540)
Q Consensus 409 ~~~~~~--------~~~~i~~~~~sp~~~~l~~~~-~dg~i~i~d~~~~~~~----~~~----~~~~~~v~~~~~~~s~~ 471 (540)
...... .+.....++|++++.+++... ..+...+++....... ... ............+++++
T Consensus 161 ~~~~~~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d 240 (333)
T d1ri6a_ 161 GHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPD 240 (333)
T ss_dssp SCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTT
T ss_pred CcceeeeceeeeeecCCCccEEEEeccceeEEeeccccCceEEEeecccccceeeeeeeeeeecCCCccccceeEEEecc
Confidence 433221 124678899999998876654 5567778776433211 111 11122223334478999
Q ss_pred CCeEEE-eeCCCcEEEEEecCCcceeEEE-ecccceeeeEEEEcCCCcEEEeec--CCeeEEEEccc
Q psy18231 472 DSQIFC-GSSDGKIYKWQLVDSSQISTLI-HSVGKAVVNSLCSHPTRKHIMSAC--GNNVKLWTAEE 534 (540)
Q Consensus 472 ~~~l~s-~s~dg~i~iwd~~~~~~~~~~~-~~~~~~~v~~l~~s~d~~~l~s~~--d~~i~iw~~~~ 534 (540)
+++++. +..++.+.+|++.......... ...+...+.+++|+|||++|++++ +++|++|+++.
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~a~spDGk~l~va~~~~~~v~v~~id~ 307 (333)
T d1ri6a_ 241 GRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKSHHISVYEIVG 307 (333)
T ss_dssp SSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSSCCCEEECTTSSEEEEECTTTCEEEEEEEET
T ss_pred cCceeeecccCCeEEEEEEcCCCCEEEEEEEeCCCCCeeEEEEeCCCCEEEEEECCCCeEEEEEEEC
Confidence 997554 5667899999987665444333 113445678999999999987776 78999997643
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.86 E-value=4.1e-20 Score=173.70 Aligned_cols=275 Identities=9% Similarity=0.034 Sum_probs=183.7
Q ss_pred CeEEEEeCCCCCEEEEee-----CCCcEEEEcCCCCeeEEEeecCCcceeEEEEeeCCCeEEEee----------CCCeE
Q psy18231 166 GLMHTRFPVDGSYCLTCG-----SDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGA----------SDKSV 230 (540)
Q Consensus 166 ~v~~v~~spdg~~lat~~-----~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s----------~dg~i 230 (540)
++.-.+.+|||+++++.. .+++|.+||..+++.+.++..+.. ..++|||||++|++++ .|+.|
T Consensus 3 p~~~~a~spdg~~~~v~~~~~~~~~~~v~v~D~~tg~~~~~~~~g~~--~~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v 80 (355)
T d2bbkh_ 3 PRILEAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFL--PNPVVADDGSFIAHASTVFSRIARGERTDYV 80 (355)
T ss_dssp CCBCCCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSS--CEEEECTTSSCEEEEEEEEEETTEEEEEEEE
T ss_pred CcEeEeeCCCCCEEEEEecccCCCcCeEEEEECCCCcEEEEEECCCC--CceEEcCCCCEEEEEeCCCccccccCCCCEE
Confidence 344456799999988653 456799999999999999876544 4799999999987653 47899
Q ss_pred EEEEcCCCceeEeccccC-------CceeEEEECCCCCEEEEec--CCCcEEEEEecCCCCCCcchhhhhHhhhhcCCce
Q psy18231 231 ILWEVTTGQPVRRWREHA-------SKVTCVKFNEDSSVVISGS--QDNTVMMWDVKSRSHHPIQVRCLNEALKEARDSI 301 (540)
Q Consensus 231 ~iwd~~~~~~~~~~~~h~-------~~v~~~~~~~~~~~l~s~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (540)
++||+.+++.+..+..+. .....++|+|++++++.++ .+..+.+|+..+++.....
T Consensus 81 ~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~--------------- 145 (355)
T d2bbkh_ 81 EVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRML--------------- 145 (355)
T ss_dssp EEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEE---------------
T ss_pred EEEECCCCCEEEEEecCCcceeecCCCCceEEEecCCCeeEEecCCCCceeeeeecCCCcEeeEE---------------
Confidence 999999999887765432 2345689999999887664 4678899998776520000
Q ss_pred eEEEEeecccccccccCceeeEEEeeeecccccceeeeeeccceeEEEeecccceecccccccccccchhhhhhcccccE
Q psy18231 302 TSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEARDSI 381 (540)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 381 (540)
..+ ...
T Consensus 146 -------------------------------------------------------------------------~~~-~~~ 151 (355)
T d2bbkh_ 146 -------------------------------------------------------------------------DVP-DCY 151 (355)
T ss_dssp -------------------------------------------------------------------------ECC-SEE
T ss_pred -------------------------------------------------------------------------ecC-Ccc
Confidence 000 000
Q ss_pred EEEEecCCeeEeeeCCCeEEEEeCCCCceEEeee--------CCceEEEEEecCCcEEEeecCCCeEEEEeccccchh--
Q psy18231 382 TSVHVSDHEILTASLDCRIRRYDIRTGNLVTDYV--------GEPIVDACFTRDCQCILTCSTDECLRLFDKATGELL-- 451 (540)
Q Consensus 382 ~~l~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~--------~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~-- 451 (540)
......+...+..+.|+...++............ ...+....+++++..++.++.++.+++|++..++..
T Consensus 152 ~~~~~~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 231 (355)
T d2bbkh_ 152 HIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFL 231 (355)
T ss_dssp EEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEEC
T ss_pred eEeecCCcceEEEcCCCCEEEEEecCCCeEEEEecccccceecceeeeccccCCCCeEEEecCCCeEEEEecCCCcEEEE
Confidence 0001111223333444444444333322211111 123555678888888999999999999998876431
Q ss_pred hhhccC----------cCCcceEEEEecCCCCeEEEeeCC----------CcEEEEEecCCcceeEEEecccceeeeEEE
Q psy18231 452 EEYKGH----------KSGDFRIECCLDSKDSQIFCGSSD----------GKIYKWQLVDSSQISTLIHSVGKAVVNSLC 511 (540)
Q Consensus 452 ~~~~~~----------~~~v~~~~~~~s~~~~~l~s~s~d----------g~i~iwd~~~~~~~~~~~~~~~~~~v~~l~ 511 (540)
.....+ ......+ ++++++..++....+ ..|.+||..+++.+..+. +...+.+++
T Consensus 232 ~~~~~~~~~~~~~~~~p~~~~~~--~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~~~~~~---~~~~~~~~a 306 (355)
T d2bbkh_ 232 PAVEALTEAERADGWRPGGWQQV--AYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFE---MGHEIDSIN 306 (355)
T ss_dssp CCEESSCHHHHHTTEEECSSSCE--EEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEE---EEEEECEEE
T ss_pred eccCCcccceEeeeeeccceEEE--EEeCCCCeEEEEeccCCceeecCCCCeEEEEeCCCCcEEEEec---CCCCEEEEE
Confidence 111111 1122334 788999987766543 369999999999988886 446689999
Q ss_pred EcCCCc--EEEeec-CCeeEEEEccccc
Q psy18231 512 SHPTRK--HIMSAC-GNNVKLWTAEEDY 536 (540)
Q Consensus 512 ~s~d~~--~l~s~~-d~~i~iw~~~~~~ 536 (540)
|+|||+ ++++++ |++|++||++++.
T Consensus 307 ~spDG~~~l~v~~~~d~~i~v~D~~tg~ 334 (355)
T d2bbkh_ 307 VSQDEKPLLYALSTGDKTLYIHDAESGE 334 (355)
T ss_dssp ECCSSSCEEEEEETTTTEEEEEETTTCC
T ss_pred EcCCCCeEEEEEECCCCEEEEEECCCCC
Confidence 999997 445666 9999999998763
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=99.86 E-value=7.3e-20 Score=171.07 Aligned_cols=290 Identities=11% Similarity=0.043 Sum_probs=196.6
Q ss_pred hhhhhcccccceeeeecccccceee----eeecCeEEEEeCCCCCEEE-EeeCCCcEEEEcCCCCeeEEEeecCC-----
Q psy18231 137 TRILYELPKEWSIRVYRPLTVNREL----FVLSGLMHTRFPVDGSYCL-TCGSDKKIKLWNPYRNLLLKTYGGHA----- 206 (540)
Q Consensus 137 ~~~~~~~~~~~~i~~~~~~~~~~~~----~h~~~v~~v~~spdg~~la-t~~~dg~i~iwd~~~~~~~~~~~~h~----- 206 (540)
...++..+.+.+|.+|+..+.+... .|...+.+++|+|||++++ +++.++.|.+||+.+++.+..+....
T Consensus 8 ~~~l~~~~~~~~v~v~D~~t~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~~~~~~~~~~~ 87 (346)
T d1jmxb_ 8 HEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEV 87 (346)
T ss_dssp CEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEE
T ss_pred CcEEEEEcCCCEEEEEECCCCCEEEEEEcCCCCCcceEEECCCCCEEEEEECCCCcEEEEeCccCeeeeeeccccccccc
Confidence 3456677888999999998865332 3456788999999999875 55678999999999999988775322
Q ss_pred -cceeEEEEeeCCCeEEEee------------CCCeEEEEEcCCCceeEecccc--CCceeEEEECCCCCEEEEecCCCc
Q psy18231 207 -HEVNDATAACDSSQIASGA------------SDKSVILWEVTTGQPVRRWREH--ASKVTCVKFNEDSSVVISGSQDNT 271 (540)
Q Consensus 207 -~~v~~l~~sp~~~~l~s~s------------~dg~i~iwd~~~~~~~~~~~~h--~~~v~~~~~~~~~~~l~s~~~dg~ 271 (540)
..+..++|+|||+++++++ .++.+.+|+..+++....+..+ ...+..+.+++++..++++ +.
T Consensus 88 ~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~ 164 (346)
T d1jmxb_ 88 GRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAG---PD 164 (346)
T ss_dssp EECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSCEEEES---SS
T ss_pred CCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEecccceeeeEEEeeeccCceEEEEecCCCEEEEeC---Cc
Confidence 2456899999999988765 4678999999888766554433 3456667777777766543 45
Q ss_pred EEEEEecCCCCCCcchhhhhHhhhhcCCceeEEEEeecccccccccCceeeEEEeeeecccccceeeeeeccceeEEEee
Q psy18231 272 VMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLD 351 (540)
Q Consensus 272 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (540)
+.+|++.+++..... .... .........++....
T Consensus 165 ~~~~~~~~~~~~~~~---------------------~~~~-----------------------~~~~~~~~~~~~~~~-- 198 (346)
T d1jmxb_ 165 IYKMDVKTGKYTVAL---------------------PLRN-----------------------WNRKGYSAPDVLYFW-- 198 (346)
T ss_dssp EEEECTTTCCEEEEE---------------------CSTT-----------------------CCCTTBCCCBCCCCC--
T ss_pred ceEEEccCCCEEEEE---------------------ecCC-----------------------CccceEEeccccEEE--
Confidence 889998776521100 0000 000000000000000
Q ss_pred cccceecccccccccccchhhhhhcccccEE----EEEecC--CeeEeeeCCCeEEEEeCCCCceEEeee---CCceEEE
Q psy18231 352 FLGSTQIGDVTPISIHNSCFQALKEARDSIT----SVHVSD--HEILTASLDCRIRRYDIRTGNLVTDYV---GEPIVDA 422 (540)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~----~l~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~---~~~i~~~ 422 (540)
........+. ...+.+ ..+.++..++.+.+||..++....... ...+..+
T Consensus 199 ---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (346)
T d1jmxb_ 199 ---------------------PHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTG 257 (346)
T ss_dssp ---------------------CCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEE
T ss_pred ---------------------EEecCCCceEeeeeeeeeccCceeEeeccCCceEEEEECCCCceEEEEeecccceeEEE
Confidence 0000001111 111111 445666777889999999887655442 3568889
Q ss_pred EEecCCcEEEeecCCCeEEEEeccccchhhhhccCcCCcceEEEEecCCCCeEEEeeCCCcEEEEEecCCcceeEEEe
Q psy18231 423 CFTRDCQCILTCSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIH 500 (540)
Q Consensus 423 ~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~ 500 (540)
.+++++.+++.... +.|++||..+++.+..+.. ...+..+ +|+|||++|++++.|+.|++||+.+++.+.++..
T Consensus 258 ~~~~~~~~~~~~~~-~~v~v~d~~~~~~~~~~~~-~~~~~~v--a~s~DG~~l~v~~~d~~v~v~D~~t~~~i~~i~~ 331 (346)
T d1jmxb_ 258 LRSPKDPNQIYGVL-NRLAKYDLKQRKLIKAANL-DHTYYCV--AFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIKL 331 (346)
T ss_dssp EECSSCTTEEEEEE-SEEEEEETTTTEEEEEEEC-SSCCCEE--EECSSSSCEEEESBSSEEEEEETTTTEEEEEEEC
T ss_pred EEeCCCCEEEEecC-CeEEEEECCCCcEEEEEcC-CCCEEEE--EEcCCCCEEEEEeCCCcEEEEECccCCEEEEEEC
Confidence 99998888877654 6799999999998877753 3456666 8999999999999999999999999999999984
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=99.83 E-value=4.1e-18 Score=161.09 Aligned_cols=280 Identities=8% Similarity=-0.059 Sum_probs=193.2
Q ss_pred ccceeeeecccccceeee-eecCeEEEEeCCCCCEEEEee----------CCCcEEEEcCCCCeeEEEeecCCcce----
Q psy18231 145 KEWSIRVYRPLTVNRELF-VLSGLMHTRFPVDGSYCLTCG----------SDKKIKLWNPYRNLLLKTYGGHAHEV---- 209 (540)
Q Consensus 145 ~~~~i~~~~~~~~~~~~~-h~~~v~~v~~spdg~~lat~~----------~dg~i~iwd~~~~~~~~~~~~h~~~v---- 209 (540)
....+.+|+..+.+.... ..+....++|||||++|++++ .++.|.+||..+++.+..+..+....
T Consensus 45 ~~~~v~v~D~~tg~~~~~~~~~~~~~~a~SpDG~~l~va~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~ 124 (373)
T d2madh_ 45 AIIQQWVLDAGSGSILGHVNGGFLPNPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVG 124 (373)
T ss_pred CCceEEEEECCCCCEEEEEeCCCCccEEEcCCCCEEEEEeecCCcccccccceEEEEEECCCCcEEEEEecCCcceeEec
Confidence 345678888777654322 233445799999999999874 35789999999999998887665543
Q ss_pred ---eEEEEeeCCCeEEEee--CCCeEEEEEcCCCceeEeccccCCceeEEEECCCCCE-EEEecCCCcEEEEEecCCCCC
Q psy18231 210 ---NDATAACDSSQIASGA--SDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSV-VISGSQDNTVMMWDVKSRSHH 283 (540)
Q Consensus 210 ---~~l~~sp~~~~l~s~s--~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~-l~s~~~dg~i~iwd~~~~~~~ 283 (540)
..+.|+++++.++... .++.+.+|+....+.... .....++.++|+++. +++.+.||.+.+|+....+..
T Consensus 125 ~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~ 200 (373)
T d2madh_ 125 PYSWMNANTPNNADLLFFQFAAGPAVGLVVQGGSSDDQL----LSSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAG 200 (373)
T ss_pred cCCCcEEEEeCCCcEEEEEEcCCCceEEeeccCCeEEEE----eccceeEEEecCCCcEEEEEcCCCeEEEEEcCCceee
Confidence 4578999999776554 456899999887765443 345678899998865 467889999999998876521
Q ss_pred CcchhhhhHhhhhcCCceeEEEEeecccccccccCceeeEEEeeeecccccceeeeeeccceeEEEeecccceecccccc
Q psy18231 284 PIQVRCLNEALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTP 363 (540)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (540)
......
T Consensus 201 ~~~~~~-------------------------------------------------------------------------- 206 (373)
T d2madh_ 201 AGLVGA-------------------------------------------------------------------------- 206 (373)
T ss_pred EEEeee--------------------------------------------------------------------------
Confidence 111000
Q ss_pred cccccchhhhhhcccccEEEEEecC-CeeEeeeCCCeEEEEeCCCCceEEeee--------------CCceEEEEEecCC
Q psy18231 364 ISIHNSCFQALKEARDSITSVHVSD-HEILTASLDCRIRRYDIRTGNLVTDYV--------------GEPIVDACFTRDC 428 (540)
Q Consensus 364 ~~~~~~~~~~~~~~~~~v~~l~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~--------------~~~i~~~~~sp~~ 428 (540)
............+.+++ ..++..+.++.+.+|+..+........ ......++++|++
T Consensus 207 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 278 (373)
T d2madh_ 207 --------MLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSS 278 (373)
T ss_pred --------ccccCccceeeeEEECCCceEEEecCCceEEEEEcCCCeEEEEEeeccccCcEEeeeeccCcceeeEEecCC
Confidence 00011112223344555 556667778888888888765432111 1233445666666
Q ss_pred cEEE----------eecCCCeEEEEeccccchhhhhccCcCCcceEEEEecCCCCe--EEEeeCCCcEEEEEecCCccee
Q psy18231 429 QCIL----------TCSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQ--IFCGSSDGKIYKWQLVDSSQIS 496 (540)
Q Consensus 429 ~~l~----------~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~s~~~~~--l~s~s~dg~i~iwd~~~~~~~~ 496 (540)
..++ ....++.+.+||..+++.+..+. +...+..+ +|+|||+. +++++.|++|++||+.+++.+.
T Consensus 279 ~~~~~~~~~~~~~~~~~~~~~v~~~d~~t~~~~~~~~-~~~~~~~~--a~spDG~~~l~vt~~~d~~v~v~D~~tg~~~~ 355 (373)
T d2madh_ 279 DGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQIS-LGHDVDAI--SVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQ 355 (373)
T ss_pred CeEEEecCCCceEEeecCCCeEEEEECCCCcEEEEec-CCCCeeEE--EECCCCCEEEEEEeCCCCeEEEEECCCCCEEE
Confidence 5543 45567789999999999888775 33445555 89999984 5788999999999999999999
Q ss_pred EEEecccceeeeEEEEcCC
Q psy18231 497 TLIHSVGKAVVNSLCSHPT 515 (540)
Q Consensus 497 ~~~~~~~~~~v~~l~~s~d 515 (540)
.+. .+....+.+++.++
T Consensus 356 ~~~--~~g~~P~~l~~~~~ 372 (373)
T d2madh_ 356 STV--ELGSGPQVLSVMNE 372 (373)
T ss_pred EEC--CCCCCCcEEEEecC
Confidence 998 67677777777554
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=99.82 E-value=3.7e-18 Score=158.53 Aligned_cols=271 Identities=10% Similarity=0.104 Sum_probs=179.9
Q ss_pred hhcccccceeeeecccccc-----eeeeeecCeEEEEeCCCCCEEEEee-CCCcEEEEcCCCCeeEEEe---ecCCccee
Q psy18231 140 LYELPKEWSIRVYRPLTVN-----RELFVLSGLMHTRFPVDGSYCLTCG-SDKKIKLWNPYRNLLLKTY---GGHAHEVN 210 (540)
Q Consensus 140 ~~~~~~~~~i~~~~~~~~~-----~~~~h~~~v~~v~~spdg~~lat~~-~dg~i~iwd~~~~~~~~~~---~~h~~~v~ 210 (540)
+.+.+.+.+|++|+..... +...|.+.+..++|||||++|++++ .|+.|++|++.......++ ..+...+.
T Consensus 7 ~v~~~~~~~I~v~~~~~~~~l~~~~~~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~~p~ 86 (333)
T d1ri6a_ 7 YIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLT 86 (333)
T ss_dssp EEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCCS
T ss_pred EEECCCCCcEEEEEEcCCCCeEEEEEEcCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeecccCCCce
Confidence 3455788899999875422 3346889999999999999996555 5899999998765433222 23455678
Q ss_pred EEEEeeCCCeEEEeeC-CCeEEEEEcCCCceeEe--ccccCCceeEEEECCCCCEEEEecC-CCcEEEEEecCCCCCCcc
Q psy18231 211 DATAACDSSQIASGAS-DKSVILWEVTTGQPVRR--WREHASKVTCVKFNEDSSVVISGSQ-DNTVMMWDVKSRSHHPIQ 286 (540)
Q Consensus 211 ~l~~sp~~~~l~s~s~-dg~i~iwd~~~~~~~~~--~~~h~~~v~~~~~~~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~ 286 (540)
.++|+|||++|++++. ++.|.+|+......... ...+...+.++.++|+++++++++. +..|.+|+..........
T Consensus 87 ~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 166 (333)
T d1ri6a_ 87 HISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQ 166 (333)
T ss_dssp EEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEE
T ss_pred EEEEcCCCCEEeecccCCCceeeeccccccceecccccCCCccceEEEeeecceeeeccccccceeeEEEeccCCcceee
Confidence 8999999999998875 67899999877654433 3356777899999999998887764 456899998765420000
Q ss_pred hhhhhHhhhhcCCceeEEEEeecccccccccCceeeEEEeeeecccccceeeeeeccceeEEEeecccceeccccccccc
Q psy18231 287 VRCLNEALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISI 366 (540)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (540)
.
T Consensus 167 ~------------------------------------------------------------------------------- 167 (333)
T d1ri6a_ 167 D------------------------------------------------------------------------------- 167 (333)
T ss_dssp E-------------------------------------------------------------------------------
T ss_pred e-------------------------------------------------------------------------------
Confidence 0
Q ss_pred ccchhhhhhcccccEEEEEecC--Cee-EeeeCCCeEEEEeCCCCce----EEeee--------CCceEEEEEecCCcEE
Q psy18231 367 HNSCFQALKEARDSITSVHVSD--HEI-LTASLDCRIRRYDIRTGNL----VTDYV--------GEPIVDACFTRDCQCI 431 (540)
Q Consensus 367 ~~~~~~~~~~~~~~v~~l~~~~--~~l-~~~~~dg~i~iwd~~~~~~----~~~~~--------~~~i~~~~~sp~~~~l 431 (540)
..............++|++ ..+ .+....+...+|+...... ..... ......++++++++++
T Consensus 168 ---~~~~~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~~ 244 (333)
T d1ri6a_ 168 ---PAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHL 244 (333)
T ss_dssp ---EEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEE
T ss_pred ---ceeeeeecCCCccEEEEeccceeEEeeccccCceEEEeecccccceeeeeeeeeeecCCCccccceeEEEecccCce
Confidence 0000011223445677776 333 3444566777877654321 11221 1356778999999876
Q ss_pred Eee-cCCCeEEEEeccccchhhhhcc---CcCCcceEEEEecCCCCeEEEee-CCCcEEEEEe--cCCcc
Q psy18231 432 LTC-STDECLRLFDKATGELLEEYKG---HKSGDFRIECCLDSKDSQIFCGS-SDGKIYKWQL--VDSSQ 494 (540)
Q Consensus 432 ~~~-~~dg~i~i~d~~~~~~~~~~~~---~~~~v~~~~~~~s~~~~~l~s~s-~dg~i~iwd~--~~~~~ 494 (540)
+.. ..++.+.+|++........... .......+ +|+|||++|++++ .++.|++|++ ++|++
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~--a~spDGk~l~va~~~~~~v~v~~id~~tG~l 312 (333)
T d1ri6a_ 245 YACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGF--NVDHSGKYLIAAGQKSHHISVYEIVGEQGLL 312 (333)
T ss_dssp EEEETTTTEEEEEEECTTSCCEEEEEEEECSSSCCCE--EECTTSSEEEEECTTTCEEEEEEEETTTTEE
T ss_pred eeecccCCeEEEEEEcCCCCEEEEEEEeCCCCCeeEE--EEeCCCCEEEEEECCCCeEEEEEEECCCCcE
Confidence 654 5678999998876544333332 22334455 8999999877665 5689999965 45544
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.81 E-value=1.9e-18 Score=162.18 Aligned_cols=274 Identities=11% Similarity=0.021 Sum_probs=182.1
Q ss_pred cccceeeeeccccccee-eeeecCeEEEEeCCCCCEEEEe----------eCCCcEEEEcCCCCeeEEEeecCCc-----
Q psy18231 144 PKEWSIRVYRPLTVNRE-LFVLSGLMHTRFPVDGSYCLTC----------GSDKKIKLWNPYRNLLLKTYGGHAH----- 207 (540)
Q Consensus 144 ~~~~~i~~~~~~~~~~~-~~h~~~v~~v~~spdg~~lat~----------~~dg~i~iwd~~~~~~~~~~~~h~~----- 207 (540)
.....+.+|+..+.... ..+.+....++|||||++|++. +.|+.|++||..+++.+..+..+..
T Consensus 25 ~~~~~v~v~D~~tg~~~~~~~~g~~~~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~~~~~~~~~~~~ 104 (355)
T d2bbkh_ 25 AAVTQQFVIDGEAGRVIGMIDGGFLPNPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLV 104 (355)
T ss_dssp CSSEEEEEEETTTTEEEEEEEECSSCEEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCB
T ss_pred CCcCeEEEEECCCCcEEEEEECCCCCceEEcCCCCEEEEEeCCCccccccCCCCEEEEEECCCCCEEEEEecCCcceeec
Confidence 34557889998776532 2344566689999999988864 3478999999999998888754432
Q ss_pred --ceeEEEEeeCCCeEEEee--CCCeEEEEEcCCCceeEeccccCCc-------eeEEEECCCCCEEEEe-cCCCcEEEE
Q psy18231 208 --EVNDATAACDSSQIASGA--SDKSVILWEVTTGQPVRRWREHASK-------VTCVKFNEDSSVVISG-SQDNTVMMW 275 (540)
Q Consensus 208 --~v~~l~~sp~~~~l~s~s--~dg~i~iwd~~~~~~~~~~~~h~~~-------v~~~~~~~~~~~l~s~-~~dg~i~iw 275 (540)
....++|+|++++++.++ .+..+.+|+..+++.+..+..+... ...+.+++++..++.. ..++.+.++
T Consensus 105 ~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~v~~~~~~~~~~~ 184 (355)
T d2bbkh_ 105 GTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEIT 184 (355)
T ss_dssp SCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEE
T ss_pred CCCCceEEEecCCCeeEEecCCCCceeeeeecCCCcEeeEEecCCcceEeecCCcceEEEcCCCCEEEEEecCCCeEEEE
Confidence 235689999999887764 4678999999999888776544322 1223344444333322 122233333
Q ss_pred EecCCCCCCcchhhhhHhhhhcCCceeEEEEeecccccccccCceeeEEEeeeecccccceeeeeeccceeEEEeecccc
Q psy18231 276 DVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGS 355 (540)
Q Consensus 276 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (540)
+......
T Consensus 185 ~~~~~~~------------------------------------------------------------------------- 191 (355)
T d2bbkh_ 185 HTEVFHP------------------------------------------------------------------------- 191 (355)
T ss_dssp ECCCCSC-------------------------------------------------------------------------
T ss_pred ecccccc-------------------------------------------------------------------------
Confidence 3222210
Q ss_pred eecccccccccccchhhhhhcccccEEEEEecC--CeeEeeeCCCeEEEEeCCCCceEE--eeeC------------Cce
Q psy18231 356 TQIGDVTPISIHNSCFQALKEARDSITSVHVSD--HEILTASLDCRIRRYDIRTGNLVT--DYVG------------EPI 419 (540)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~--~~l~~~~~dg~i~iwd~~~~~~~~--~~~~------------~~i 419 (540)
.+...+....+.+ ..++.++.++.+++|++..++... .... ...
T Consensus 192 --------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 251 (355)
T d2bbkh_ 192 --------------------EDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGW 251 (355)
T ss_dssp --------------------TTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSS
T ss_pred --------------------eecceeeeccccCCCCeEEEecCCCeEEEEecCCCcEEEEeccCCcccceEeeeeeccce
Confidence 0111112223333 678888999999999999876432 1111 234
Q ss_pred EEEEEecCCcEEEeecCC----------CeEEEEeccccchhhhhccCcCCcceEEEEecCCCC--eEEEeeCCCcEEEE
Q psy18231 420 VDACFTRDCQCILTCSTD----------ECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDS--QIFCGSSDGKIYKW 487 (540)
Q Consensus 420 ~~~~~sp~~~~l~~~~~d----------g~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~s~~~~--~l~s~s~dg~i~iw 487 (540)
..++++|++..++....+ ..|.+||..+++.+..+..+. .+..+ +|+|||+ ++++++.|+.|++|
T Consensus 252 ~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~~~~~~~~~-~~~~~--a~spDG~~~l~v~~~~d~~i~v~ 328 (355)
T d2bbkh_ 252 QQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGH-EIDSI--NVSQDEKPLLYALSTGDKTLYIH 328 (355)
T ss_dssp SCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEE-EECEE--EECCSSSCEEEEEETTTTEEEEE
T ss_pred EEEEEeCCCCeEEEEeccCCceeecCCCCeEEEEeCCCCcEEEEecCCC-CEEEE--EEcCCCCeEEEEEECCCCEEEEE
Confidence 568899999988765443 479999999999887776443 34555 8999998 35677889999999
Q ss_pred EecCCcceeEEEecccceeeeEEEEcCC
Q psy18231 488 QLVDSSQISTLIHSVGKAVVNSLCSHPT 515 (540)
Q Consensus 488 d~~~~~~~~~~~~~~~~~~v~~l~~s~d 515 (540)
|+++++.+.++. .+......+.+.++
T Consensus 329 D~~tg~~~~~i~--~~G~~p~~i~~~d~ 354 (355)
T d2bbkh_ 329 DAESGEELRSVN--QLGHGPQVITTADM 354 (355)
T ss_dssp ETTTCCEEEEEC--CCCSSCCEEECCCC
T ss_pred ECCCCCEEEEEe--CcCCCccEEEeCCC
Confidence 999999999987 45444555555443
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.73 E-value=1e-16 Score=150.94 Aligned_cols=276 Identities=9% Similarity=-0.053 Sum_probs=179.7
Q ss_pred eecCeEEEEeCCCCCEEE---EeeCCCc--EEEEcCCCCeeEEEeecCCcceeEEEEeeCCCeEEEee----------CC
Q psy18231 163 VLSGLMHTRFPVDGSYCL---TCGSDKK--IKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGA----------SD 227 (540)
Q Consensus 163 h~~~v~~v~~spdg~~la---t~~~dg~--i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s----------~d 227 (540)
+.++...++..++++... ....+++ +.+||..+++.+..+..+... .++|+|||+.|++.+ .|
T Consensus 18 ~~g~~~~~a~~~~~~~~~v~~~~~~~g~~~~~~~d~~~~~~~~~~~~~~~~--~~a~spDg~~i~~~~~~~~~~~~g~~d 95 (368)
T d1mdah_ 18 SDGSSCDHGPGAISRRSHITLPAYFAGTTENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRT 95 (368)
T ss_dssp CCCCCBCCCCCCCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEE
T ss_pred cCCCccccccCCCCcceeEEeeccCCCcceEEEEeCCCCcEEEEEeCCCCC--cceECCCCCEEEEEcccCccccccccC
Confidence 345555666788888633 2344444 667799999999988876654 589999999988754 47
Q ss_pred CeEEEEEcCCCceeEeccccCC-------ceeEEEECCCCCEEEEec-CCCcEEEEEecCCCCCCcchhhhhHhhhhcCC
Q psy18231 228 KSVILWEVTTGQPVRRWREHAS-------KVTCVKFNEDSSVVISGS-QDNTVMMWDVKSRSHHPIQVRCLNEALKEARD 299 (540)
Q Consensus 228 g~i~iwd~~~~~~~~~~~~h~~-------~v~~~~~~~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 299 (540)
++|.+||..+++.+..+..+.. ....++|+|||++|+++. .++.+.+||+.+.+.....
T Consensus 96 ~~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~~~~~v~~~d~~~~~~~~~~------------- 162 (368)
T d1mdah_ 96 DYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLT------------- 162 (368)
T ss_dssp EEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEEEEEE-------------
T ss_pred CeEEEEECCCCcEeeeecCCccceecccCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcEeEEe-------------
Confidence 7899999999998887754432 234689999999988775 5799999999887520000
Q ss_pred ceeEEEEeecccccccccCceeeEEEeeeecccccceeeeeeccceeEEEeecccceecccccccccccchhhhhhcccc
Q psy18231 300 SITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEARD 379 (540)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (540)
..+..
T Consensus 163 ---------------------------------------------------------------------------~~~~~ 167 (368)
T d1mdah_ 163 ---------------------------------------------------------------------------KSASC 167 (368)
T ss_dssp ---------------------------------------------------------------------------ECSSC
T ss_pred ---------------------------------------------------------------------------eccCc
Confidence 00000
Q ss_pred cEEEEEecCCeeEeeeCCCeEEEEeCCCCceEEeee--------CCceEEEEEecCCcEEEeecCCCeEEEEeccccchh
Q psy18231 380 SITSVHVSDHEILTASLDCRIRRYDIRTGNLVTDYV--------GEPIVDACFTRDCQCILTCSTDECLRLFDKATGELL 451 (540)
Q Consensus 380 ~v~~l~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~--------~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~ 451 (540)
.. .....+..++..+.||.+.++++.......... ...+....+.+++..+.+.. +.+++++...+...
T Consensus 168 ~~-~~~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~--~~v~~~~~~~~~~~ 244 (368)
T d1mdah_ 168 FH-IHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAVA--SSILQGDIPAAGAT 244 (368)
T ss_dssp CC-CEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEEEECBS--SCCEEEECCSSCCE
T ss_pred ce-EccCCCceEEEEcCCCCEEEEEecCCceeeeeeecccccccccceeecccccCcEEEEecC--CCEEEEeecCCceE
Confidence 00 001112556777888888888887554332221 12344567777777666543 44555554433221
Q ss_pred ----------hhhcc--CcCCcceEEEEecCCCCeEEEeeCC---------CcEEEEEecCCcceeEEEecccceeeeEE
Q psy18231 452 ----------EEYKG--HKSGDFRIECCLDSKDSQIFCGSSD---------GKIYKWQLVDSSQISTLIHSVGKAVVNSL 510 (540)
Q Consensus 452 ----------~~~~~--~~~~v~~~~~~~s~~~~~l~s~s~d---------g~i~iwd~~~~~~~~~~~~~~~~~~v~~l 510 (540)
..... .......+ ++++++..++....+ ..|.+||..+++.+..+. +...+.++
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~g~~~~--a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~---~~~~~~~~ 319 (368)
T d1mdah_ 245 MKAAIDGNESGRKADNFRSAGFQMV--AKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPIS---NGHDSDAI 319 (368)
T ss_dssp EECCCCSSCTHHHHTTEEECSSSCE--EEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCE---EEEEECEE
T ss_pred EEeecccccceeeeeeecCCCceeE--EEcCCCCEEEEEecCCCceeecCCceEEEEECCCCcEeEEec---CCCceeEE
Confidence 11110 11112234 688888876655322 359999999999888876 44679999
Q ss_pred EEcCCCc-E-EEeec-CCeeEEEEccccc
Q psy18231 511 CSHPTRK-H-IMSAC-GNNVKLWTAEEDY 536 (540)
Q Consensus 511 ~~s~d~~-~-l~s~~-d~~i~iw~~~~~~ 536 (540)
+|+|||+ + ++++. |++|++||..++.
T Consensus 320 a~spDG~~~ly~s~~~~~~v~v~D~~tgk 348 (368)
T d1mdah_ 320 IAAQDGASDNYANSAGTEVLDIYDAASDQ 348 (368)
T ss_dssp EECCSSSCEEEEEETTTTEEEEEESSSCE
T ss_pred EECCCCCEEEEEEeCCCCeEEEEECCCCC
Confidence 9999997 3 45556 9999999998764
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.71 E-value=3.2e-16 Score=147.48 Aligned_cols=265 Identities=9% Similarity=-0.042 Sum_probs=172.0
Q ss_pred ceeeeeccccccee-eeeecCeEEEEeCCCCCEEEEee----------CCCcEEEEcCCCCeeEEEeecCCc-------c
Q psy18231 147 WSIRVYRPLTVNRE-LFVLSGLMHTRFPVDGSYCLTCG----------SDKKIKLWNPYRNLLLKTYGGHAH-------E 208 (540)
Q Consensus 147 ~~i~~~~~~~~~~~-~~h~~~v~~v~~spdg~~lat~~----------~dg~i~iwd~~~~~~~~~~~~h~~-------~ 208 (540)
..+.+++..+.... ..+.+....++|+|||++|++.+ .|+.|++||..+++++..+..+.. .
T Consensus 46 ~~~~~~d~~~~~~~~~~~~~~~~~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~p~~~~~~~g~~ 125 (368)
T d1mdah_ 46 TENWVSCAGCGVTLGHSLGAFLSLAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPR 125 (368)
T ss_dssp EEEEEEETTTTEEEEEEEECTTCEEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCC
T ss_pred ceEEEEeCCCCcEEEEEeCCCCCcceECCCCCEEEEEcccCccccccccCCeEEEEECCCCcEeeeecCCccceecccCC
Confidence 34666677665432 12333345789999999998754 467899999999999888865432 2
Q ss_pred eeEEEEeeCCCeEEEee-CCCeEEEEEcCCCceeEeccccCCceeEEEECCCCCEEEEecCCCcEEEEEecCCCCCCcch
Q psy18231 209 VNDATAACDSSQIASGA-SDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQV 287 (540)
Q Consensus 209 v~~l~~sp~~~~l~s~s-~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 287 (540)
...++|+|||++|+++. .++.+.+||+.+++.+..+..+...... ......++..+.||++.+|++..........
T Consensus 126 p~~~a~SpDGk~l~va~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~---~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~ 202 (368)
T d1mdah_ 126 VHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTKSASCFHIH---PGAAATHYLGSCPASLAASDLAAAPAAAGIV 202 (368)
T ss_dssp TTSEEECTTSSCEEEEECSSSCEEEEEETTTEEEEEEECSSCCCCE---EEETTEEECCCCTTSCEEEECCSSCCCCEEC
T ss_pred ccceEECCCCCEEEEEeCCCCeEEEEECCCCcEeEEeeccCcceEc---cCCCceEEEEcCCCCEEEEEecCCceeeeee
Confidence 34689999999998776 5799999999999988877655443221 1123466777888998888877654211110
Q ss_pred hhhhHhhhhcCCceeEEEEeecccccccccCceeeEEEeeeecccccceeeeeeccceeEEEeecccceecccccccccc
Q psy18231 288 RCLNEALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIH 367 (540)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (540)
.
T Consensus 203 ~------------------------------------------------------------------------------- 203 (368)
T d1mdah_ 203 G------------------------------------------------------------------------------- 203 (368)
T ss_dssp C-------------------------------------------------------------------------------
T ss_pred e-------------------------------------------------------------------------------
Confidence 0
Q ss_pred cchhhhhhcccccEEEEEecCCeeEeeeCCCeEEEEeCCCCceEEeee--------------CCceEEEEEecCCcEEEe
Q psy18231 368 NSCFQALKEARDSITSVHVSDHEILTASLDCRIRRYDIRTGNLVTDYV--------------GEPIVDACFTRDCQCILT 433 (540)
Q Consensus 368 ~~~~~~~~~~~~~v~~l~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~--------------~~~i~~~~~sp~~~~l~~ 433 (540)
......+...+....+.+...+....++.+.+++...+....... ......++++|++..++.
T Consensus 204 ---~~~~~~~~~~~~~~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v 280 (368)
T d1mdah_ 204 ---AQCTGAQNCSSQAAQANYPGMLVWAVASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMI 280 (368)
T ss_dssp ---CCSCTTSCBCSCCEEETTTTEEEECBSSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEE
T ss_pred ---cccccccccceeecccccCcEEEEecCCCEEEEeecCCceEEEeecccccceeeeeeecCCCceeEEEcCCCCEEEE
Confidence 000111122222333444223333344556666655444322111 122345788998887766
Q ss_pred ecCC---------CeEEEEeccccchhhhhccCcCCcceEEEEecCCCCe--EEEeeCCCcEEEEEecCCcceeEEE
Q psy18231 434 CSTD---------ECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQ--IFCGSSDGKIYKWQLVDSSQISTLI 499 (540)
Q Consensus 434 ~~~d---------g~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~s~~~~~--l~s~s~dg~i~iwd~~~~~~~~~~~ 499 (540)
...+ ..|.+||..+++.+..+... ..+..+ +|+|||+. ++++..|+.|++||..+++.+..+.
T Consensus 281 ~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~-~~~~~~--a~spDG~~~ly~s~~~~~~v~v~D~~tgk~~~~i~ 354 (368)
T d1mdah_ 281 LTVEHSRSCLAAAENTSSVTASVGQTSGPISNG-HDSDAI--IAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVE 354 (368)
T ss_dssp EEEECSSCTTSCEEEEEEEESSSCCEEECCEEE-EEECEE--EECCSSSCEEEEEETTTTEEEEEESSSCEEEEECC
T ss_pred EecCCCceeecCCceEEEEECCCCcEeEEecCC-CceeEE--EECCCCCEEEEEEeCCCCeEEEEECCCCCEEEEEE
Confidence 4322 35999999999988877644 345555 89999973 4677789999999999999999887
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.67 E-value=4.8e-15 Score=144.32 Aligned_cols=131 Identities=11% Similarity=0.030 Sum_probs=100.0
Q ss_pred cceeeeecccccceee--------eeecCeEEEEeCCCCCEEEEeeC---------CCcEEEEcCCCCeeEEEeecCCcc
Q psy18231 146 EWSIRVYRPLTVNREL--------FVLSGLMHTRFPVDGSYCLTCGS---------DKKIKLWNPYRNLLLKTYGGHAHE 208 (540)
Q Consensus 146 ~~~i~~~~~~~~~~~~--------~h~~~v~~v~~spdg~~lat~~~---------dg~i~iwd~~~~~~~~~~~~h~~~ 208 (540)
++.+.+|+..+..... .|...|.++.|||||++||.++. ++.+.|||+.+++. ..+..|...
T Consensus 35 ~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d~~~~~~-~~l~~~~~~ 113 (470)
T d2bgra1 35 ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQL-ITEERIPNN 113 (470)
T ss_dssp SSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEE-CCSSCCCTT
T ss_pred CCcEEEEECCCCCEEEEEchhhhhhccCccceeEECCCCCEEEEEECCcceeeeccCceEEEEECCCCcc-cccccCCcc
Confidence 4567788877765322 24567999999999999998743 57889999998874 557788999
Q ss_pred eeEEEEeeCCCeEEEeeCCCeEEEEEcCCCceeEeccc------------------cCCceeEEEECCCCCEEEEecCCC
Q psy18231 209 VNDATAACDSSQIASGASDKSVILWEVTTGQPVRRWRE------------------HASKVTCVKFNEDSSVVISGSQDN 270 (540)
Q Consensus 209 v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~------------------h~~~v~~~~~~~~~~~l~s~~~dg 270 (540)
+..+.|||||+.+|... ++.+.+|+..+++..+.... ..+....+.|+|||++|+....|.
T Consensus 114 ~~~~~~SPDG~~ia~~~-~~~l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~~~~wSPDGk~ia~~~~d~ 192 (470)
T d2bgra1 114 TQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFND 192 (470)
T ss_dssp EEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEEC
T ss_pred ccccccccCcceeeEee-cccceEEECCCCceeeeeeccCCCcccccccceeeeeeecCCccccEECCCCCccceeEecC
Confidence 99999999999999864 67899999988876654332 223456688999999999987664
Q ss_pred c-EEEEEec
Q psy18231 271 T-VMMWDVK 278 (540)
Q Consensus 271 ~-i~iwd~~ 278 (540)
+ +..|.+.
T Consensus 193 ~~v~~~~~~ 201 (470)
T d2bgra1 193 TEVPLIEYS 201 (470)
T ss_dssp TTCCEEEEE
T ss_pred CcCceEEEE
Confidence 4 6666554
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=99.63 E-value=2.5e-14 Score=133.08 Aligned_cols=290 Identities=8% Similarity=0.027 Sum_probs=174.6
Q ss_pred EEEeeCCCcEEEEcCCCCeeEEEeec------------------------------CCcceeEEEEeeCCCeEEEe-eCC
Q psy18231 179 CLTCGSDKKIKLWNPYRNLLLKTYGG------------------------------HAHEVNDATAACDSSQIASG-ASD 227 (540)
Q Consensus 179 lat~~~dg~i~iwd~~~~~~~~~~~~------------------------------h~~~v~~l~~sp~~~~l~s~-s~d 227 (540)
+++++.+|.|++|++.+++.++++.. |........++|||++|+.. ..+
T Consensus 14 f~Sgg~sG~V~V~dlpS~r~l~~IpVfspd~~~g~g~~~es~~vl~~~~~~~~gd~hhP~~s~t~gtpDGr~lfV~d~~~ 93 (441)
T d1qnia2 14 FWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGITNESKEILGGDQQYLNGDCHHPHISMTDGRYDGKYLFINDKAN 93 (441)
T ss_dssp EEECBTTCCEEEEEETTTEEEEEECSSSBCTTTCTTTSHHHHHHHCSSSCCSCCCBCCCEEEEETTEEEEEEEEEEETTT
T ss_pred EEeCCCCCcEEEEeCCCCcEEEEEEeEcCCCCEEEEECCccceEEecccccccCcccCCCcceecccCCCCEEEEEcCCC
Confidence 45677788888888888877776532 22334455568999998665 567
Q ss_pred CeEEEEEcCCCceeEecc-ccCCceeEEEECCCCC--EEEEecCCCcEEE------------------EEecCCCCCCcc
Q psy18231 228 KSVILWEVTTGQPVRRWR-EHASKVTCVKFNEDSS--VVISGSQDNTVMM------------------WDVKSRSHHPIQ 286 (540)
Q Consensus 228 g~i~iwd~~~~~~~~~~~-~h~~~v~~~~~~~~~~--~l~s~~~dg~i~i------------------wd~~~~~~~~~~ 286 (540)
++|.++|+.+++....+. .+...+..++|+|+++ +++..+.+ .+.+ +|..+.+
T Consensus 94 ~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~-~v~~~~dg~~~~~~~~~~~~~~iD~~t~~----- 167 (441)
T d1qnia2 94 TRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEF-VIPQPNDGTDFSLDNSYTMFTAIDAETMD----- 167 (441)
T ss_dssp TEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECS-CEESSCSSSCCCGGGEEEEEEEEETTTCS-----
T ss_pred CEEEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEEeccCC-cccccCcccccccccccceEEeecCccce-----
Confidence 899999999998877664 4577899999999998 44444433 2322 2221111
Q ss_pred hhhhhHhhhhcCCceeEEEEeecccccccccCceeeEEEeeeecccccceeeeeeccceeEEEeecccceeccccccccc
Q psy18231 287 VRCLNEALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISI 366 (540)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (540)
... +.. ..+....+..+.++...+....+......+.....
T Consensus 168 ------------------------------------v~~--qI~-v~~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~ 208 (441)
T d1qnia2 168 ------------------------------------VAW--QVI-VDGNLDNTDADYTGKYATSTCYNSERAVDLAGTMR 208 (441)
T ss_dssp ------------------------------------EEE--EEE-ESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTC
T ss_pred ------------------------------------eeE--EEe-cCCCccceEECCCCCEEEEEecCCCceEEEeccCc
Confidence 000 000 11223334444444444443332222111110000
Q ss_pred ccchhhhhhcccccEEE------EEecC-CeeEeeeCCCeEEEEeCCCCceEEeee-CCceEEEEEecCCcEEEe-ecCC
Q psy18231 367 HNSCFQALKEARDSITS------VHVSD-HEILTASLDCRIRRYDIRTGNLVTDYV-GEPIVDACFTRDCQCILT-CSTD 437 (540)
Q Consensus 367 ~~~~~~~~~~~~~~v~~------l~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~i~~~~~sp~~~~l~~-~~~d 437 (540)
.....|.. +.+.+ ...+..+.++.+.+++....+.+..+. +.....+.++|||+++++ +..+
T Consensus 209 ---------~~~d~i~v~n~p~~~~~~~dGk~~~v~~~~v~vvd~~~~~~v~~~IPvgksPhGv~vSPDGkyl~~~~~~~ 279 (441)
T d1qnia2 209 ---------NDRDWVVVFNVERIAAAVKAGNFKTIGDSKVPVVDGRGESEFTRYIPVPKNPHGLNTSPDGKYFIANGKLS 279 (441)
T ss_dssp ---------SSBCEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEECSSSCSSEEEECCBSSCCCEEECTTSCEEEEECTTS
T ss_pred ---------ceEEEEEeCCccceEEEecCCCEEEeCCCCcEEEEcccCCceEEEEeCCCCccCceECCCCCEEEEeCCcC
Confidence 00011111 11222 223344557778888877777776665 356788999999998754 6679
Q ss_pred CeEEEEeccccchh--------hhhccCcC-CcceEEEEecCCCCeEEEeeCCCcEEEEEecC------C----cceeEE
Q psy18231 438 ECLRLFDKATGELL--------EEYKGHKS-GDFRIECCLDSKDSQIFCGSSDGKIYKWQLVD------S----SQISTL 498 (540)
Q Consensus 438 g~i~i~d~~~~~~~--------~~~~~~~~-~v~~~~~~~s~~~~~l~s~s~dg~i~iwd~~~------~----~~~~~~ 498 (540)
++|.+||+.+.+.. ..+.++.. ....+..+|+++|..+.+...|..|..|++.. + ..+..+
T Consensus 280 ~tvsv~d~~k~~~~~~~~~~~~~~~~~~~~~glgplh~~fd~~g~~yts~~~ds~v~kw~~~~~~~~~~~~~~~~v~~~~ 359 (441)
T d1qnia2 280 PTVSVIAIDKLDDLFEDKIELRDTIVAEPELGLGPLHTTFDGRGNAYTTLFIDSQVCKWNIADAIKHYNGDRVNYIRQKL 359 (441)
T ss_dssp SBEEEEEGGGHHHHTTTSSCGGGGEEECCBCCSCEEEEEECSSSEEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEE
T ss_pred CcEEEEEeehhhhHhhccCCcceEEEeecccccCcccceecCCceEEEcccccceEEEeccchhhhhhccCCCceeEecc
Confidence 99999998764321 11111111 11223447999998899999999999999742 1 123333
Q ss_pred E---ecccceeeeEEEEcCCCcEEEee
Q psy18231 499 I---HSVGKAVVNSLCSHPTRKHIMSA 522 (540)
Q Consensus 499 ~---~~~~~~~v~~l~~s~d~~~l~s~ 522 (540)
. ..+|...+.+..++|||+||+++
T Consensus 360 ~v~y~~GH~~~~~~~t~~pdGk~l~s~ 386 (441)
T d1qnia2 360 DVQYQPGHNHASLTESRDADGKWLVVL 386 (441)
T ss_dssp ECSSCEEEEEETTTTSTTCCCCEEEEE
T ss_pred ccccCCCCCccccccccCCCCcEEEec
Confidence 1 13788889999999999999999
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.38 E-value=9.9e-12 Score=120.43 Aligned_cols=110 Identities=13% Similarity=0.080 Sum_probs=91.5
Q ss_pred EEEeCCCCCEEEEeeCCCcEEEEcCCCCeeEEEeec-----CCcceeEEEEeeCCCeEEEeeC---------CCeEEEEE
Q psy18231 169 HTRFPVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGG-----HAHEVNDATAACDSSQIASGAS---------DKSVILWE 234 (540)
Q Consensus 169 ~v~~spdg~~lat~~~dg~i~iwd~~~~~~~~~~~~-----h~~~v~~l~~sp~~~~l~s~s~---------dg~i~iwd 234 (540)
.+.|.+|++++.. .++.+.+||+.+++....+.. |...|.++.|||||++|+.++. ++.+.+||
T Consensus 21 ~~~W~~d~~~~~~--~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d 98 (470)
T d2bgra1 21 SLRWISDHEYLYK--QENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYD 98 (470)
T ss_dssp CCEECSSSEEEEE--SSSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEE
T ss_pred CCEeCCCCEEEEE--cCCcEEEEECCCCCEEEEEchhhhhhccCccceeEECCCCCEEEEEECCcceeeeccCceEEEEE
Confidence 4678999988775 478899999999987765543 4578999999999999998753 57889999
Q ss_pred cCCCceeEeccccCCceeEEEECCCCCEEEEecCCCcEEEEEecCCCC
Q psy18231 235 VTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSH 282 (540)
Q Consensus 235 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~ 282 (540)
+.+++. ..+..|...+..+.|+|||+.+|... ++.+.+|+..+++.
T Consensus 99 ~~~~~~-~~l~~~~~~~~~~~~SPDG~~ia~~~-~~~l~~~~~~~g~~ 144 (470)
T d2bgra1 99 LNKRQL-ITEERIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPS 144 (470)
T ss_dssp TTTTEE-CCSSCCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCC
T ss_pred CCCCcc-cccccCCccccccccccCcceeeEee-cccceEEECCCCce
Confidence 988774 55778899999999999999999864 67899999888763
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=99.25 E-value=1.7e-10 Score=107.04 Aligned_cols=131 Identities=6% Similarity=-0.031 Sum_probs=80.9
Q ss_pred EEEEeCCCCceEEeee-CCceEEEEEecCCcEEEeecCC-----------------------------------------
Q psy18231 400 IRRYDIRTGNLVTDYV-GEPIVDACFTRDCQCILTCSTD----------------------------------------- 437 (540)
Q Consensus 400 i~iwd~~~~~~~~~~~-~~~i~~~~~sp~~~~l~~~~~d----------------------------------------- 437 (540)
+..+|..+.+...++. +.....+.++|+|+++++.+.+
T Consensus 158 ~~~iD~~t~~v~~qI~v~~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~~dGk~~~v~~~ 237 (441)
T d1qnia2 158 FTAIDAETMDVAWQVIVDGNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVKAGNFKTIGDS 237 (441)
T ss_dssp EEEEETTTCSEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHHHTTCCBCCTTC
T ss_pred EEeecCccceeeEEEecCCCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEEecCCCEEEeCCC
Confidence 3446666665554443 3455666777777766655432
Q ss_pred CeEEEEeccccchhhhhccCcCCcceEEEEecCCCCeE-EEeeCCCcEEEEEecCCcc--------eeEEE-ecccceee
Q psy18231 438 ECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQI-FCGSSDGKIYKWQLVDSSQ--------ISTLI-HSVGKAVV 507 (540)
Q Consensus 438 g~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~s~~~~~l-~s~s~dg~i~iwd~~~~~~--------~~~~~-~~~~~~~v 507 (540)
+.+.+++....+.+..+.....+ ..+ .++|||+++ +++..+++|.+||+.+.+. ...+. .....-..
T Consensus 238 ~v~vvd~~~~~~v~~~IPvgksP-hGv--~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~~~~~~~~~~~~~~~~glgp 314 (441)
T d1qnia2 238 KVPVVDGRGESEFTRYIPVPKNP-HGL--NTSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDKIELRDTIVAEPELGLGP 314 (441)
T ss_dssp CCCEEECSSSCSSEEEECCBSSC-CCE--EECTTSCEEEEECTTSSBEEEEEGGGHHHHTTTSSCGGGGEEECCBCCSCE
T ss_pred CcEEEEcccCCceEEEEeCCCCc-cCc--eECCCCCEEEEeCCcCCcEEEEEeehhhhHhhccCCcceEEEeecccccCc
Confidence 33444444444444555544443 344 799999985 5678999999999865321 11111 00111224
Q ss_pred eEEEEcCCCcEEEeec-CCeeEEEEcc
Q psy18231 508 NSLCSHPTRKHIMSAC-GNNVKLWTAE 533 (540)
Q Consensus 508 ~~l~~s~d~~~l~s~~-d~~i~iw~~~ 533 (540)
...+|+++|..+.+.. |.+|..|+++
T Consensus 315 lh~~fd~~g~~yts~~~ds~v~kw~~~ 341 (441)
T d1qnia2 315 LHTTFDGRGNAYTTLFIDSQVCKWNIA 341 (441)
T ss_dssp EEEEECSSSEEEEEETTTTEEEEEEHH
T ss_pred ccceecCCceEEEcccccceEEEeccc
Confidence 5578999999888888 9999999985
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=99.24 E-value=3e-09 Score=95.72 Aligned_cols=234 Identities=9% Similarity=0.028 Sum_probs=153.3
Q ss_pred CeEEEEeCCCCCEEEEeeCCCcEEEEcCCCCeeEEEeecCCcceeEEEEeeCCCeEEEeeCCCeEEEEEcCCCcee-Eec
Q psy18231 166 GLMHTRFPVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPV-RRW 244 (540)
Q Consensus 166 ~v~~v~~spdg~~lat~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~-~~~ 244 (540)
.+..++++|||+++++...+++|..|+... + ...+......+.+++|++||+++++...++.+..|+....... ..+
T Consensus 29 ~~e~iAv~pdG~l~vt~~~~~~I~~i~p~g-~-~~~~~~~~~~~~gla~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~~ 106 (302)
T d2p4oa1 29 FLENLASAPDGTIFVTNHEVGEIVSITPDG-N-QQIHATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETL 106 (302)
T ss_dssp CEEEEEECTTSCEEEEETTTTEEEEECTTC-C-EEEEEECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEE
T ss_pred CcCCEEECCCCCEEEEeCCCCEEEEEeCCC-C-EEEEEcCCCCcceEEEcCCCCeEEEecCCceEEEEEecccccceeec
Confidence 466899999999999998899999998653 3 3334456788999999999999999888888888887543221 111
Q ss_pred --cccCCceeEEEECCCCCEEEEecCCCcEEEEEecCCCCCCcchhhhhHhhhhcCCceeEEEEeecccccccccCceee
Q psy18231 245 --REHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHLSNGLLTK 322 (540)
Q Consensus 245 --~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (540)
.......+.+.+.++++++++-+.++.+..++...+......
T Consensus 107 ~~~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~------------------------------------ 150 (302)
T d2p4oa1 107 LTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWL------------------------------------ 150 (302)
T ss_dssp EECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEE------------------------------------
T ss_pred cccCCccccceeEEccCCCEEeeccccccceeeeccCCcceeEe------------------------------------
Confidence 124566889999999998888888888877776654310000
Q ss_pred EEEeeeecccccceeeeeeccceeEEEeecccceecccccccccccchhhhhhcccccEEEEEecC-CeeEeeeCCCeEE
Q psy18231 323 LVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEARDSITSVHVSD-HEILTASLDCRIR 401 (540)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~-~~l~~~~~dg~i~ 401 (540)
.+... ..............+.+++ .++++.+..+.|.
T Consensus 151 ---------------------------~~~~~---------------~~~~~~~~~~~~ngi~~~~~~l~~~~~~~~~i~ 188 (302)
T d2p4oa1 151 ---------------------------EHPML---------------ARSNSESVFPAANGLKRFGNFLYVSNTEKMLLL 188 (302)
T ss_dssp ---------------------------ECGGG---------------SCSSTTCCSCSEEEEEEETTEEEEEETTTTEEE
T ss_pred ---------------------------cCCcc---------------ceeeccCcccccccccccCCceeeecCCCCeEE
Confidence 00000 0001112223445666766 5566667788898
Q ss_pred EEeCCCCceEEe----eeCCceEEEEEecCCcEEEeecCCCeEEEEeccccc-hhhhhccCcCCcceEEEEe---cCCCC
Q psy18231 402 RYDIRTGNLVTD----YVGEPIVDACFTRDCQCILTCSTDECLRLFDKATGE-LLEEYKGHKSGDFRIECCL---DSKDS 473 (540)
Q Consensus 402 iwd~~~~~~~~~----~~~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~v~~~~~~~---s~~~~ 473 (540)
.++......... ........++++++|+++++...++.|..++..... .+......-...+.+ +| ++|++
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~pdgia~d~dG~l~va~~~~~~V~~i~p~G~~~~~~~~~~~~~~pt~v--afg~~~~D~~ 266 (302)
T d2p4oa1 189 RIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGATHIYNSVVRIAPDRSTTIIAQAEQGVIGSTAV--AFGQTEGDCT 266 (302)
T ss_dssp EEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEEECBTTCCEEEECTTCCEEEEECGGGTCTTEEEE--EECCSTTTTT
T ss_pred eccccccccccccccccCCCCCcceEECCCCCEEEEEcCCCcEEEECCCCCEEEEEecCCCCCCceEE--EEcCCCCCCC
Confidence 888875433221 123556789999999988888889999999865322 222222222223344 78 67888
Q ss_pred eEEEeeCC
Q psy18231 474 QIFCGSSD 481 (540)
Q Consensus 474 ~l~s~s~d 481 (540)
.|+.++..
T Consensus 267 ~Lyvtt~~ 274 (302)
T d2p4oa1 267 AIYVVTNG 274 (302)
T ss_dssp EEEEEECT
T ss_pred EEEEECCC
Confidence 77766543
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=99.23 E-value=1e-08 Score=92.23 Aligned_cols=239 Identities=8% Similarity=-0.025 Sum_probs=154.8
Q ss_pred CCCCeeEEEeecCCcceeEEEEeeCCCeEEEeeCCCeEEEEEcCCCceeEeccccCCceeEEEECCCCCEEEEecCCCcE
Q psy18231 193 PYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTV 272 (540)
Q Consensus 193 ~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i 272 (540)
+...+.+..+.. ...+..++++|||+++++...+++|..|+.. ++ ...+......+.+++|+++|+++++...++.+
T Consensus 15 ~~~~~v~~~~p~-~~~~e~iAv~pdG~l~vt~~~~~~I~~i~p~-g~-~~~~~~~~~~~~gla~~~dG~l~v~~~~~~~~ 91 (302)
T d2p4oa1 15 LAPAKIITSFPV-NTFLENLASAPDGTIFVTNHEVGEIVSITPD-GN-QQIHATVEGKVSGLAFTSNGDLVATGWNADSI 91 (302)
T ss_dssp CCCEEEEEEECT-TCCEEEEEECTTSCEEEEETTTTEEEEECTT-CC-EEEEEECSSEEEEEEECTTSCEEEEEECTTSC
T ss_pred CCcccEEEECCC-CCCcCCEEECCCCCEEEEeCCCCEEEEEeCC-CC-EEEEEcCCCCcceEEEcCCCCeEEEecCCceE
Confidence 334455566643 2357889999999999999999999888854 43 33444567889999999999998888888888
Q ss_pred EEEEecCCCCCCcchhhhhHhhhhcCCceeEEEEeecccccccccCceeeEEEeeeecccccceeeeeeccceeEEEeec
Q psy18231 273 MMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDF 352 (540)
Q Consensus 273 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (540)
..|+.......... +
T Consensus 92 ~~~~~~~~~~~~~~--------------------------------------------------------------~--- 106 (302)
T d2p4oa1 92 PVVSLVKSDGTVET--------------------------------------------------------------L--- 106 (302)
T ss_dssp EEEEEECTTSCEEE--------------------------------------------------------------E---
T ss_pred EEEEecccccceee--------------------------------------------------------------c---
Confidence 88887654310000 0
Q ss_pred ccceecccccccccccchhhhhhcccccEEEEEecC--CeeEeeeCCCeEEEEeCCCCceEEeeeC------------Cc
Q psy18231 353 LGSTQIGDVTPISIHNSCFQALKEARDSITSVHVSD--HEILTASLDCRIRRYDIRTGNLVTDYVG------------EP 418 (540)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~------------~~ 418 (540)
...........+.+.+ .++++.+.++.+..+|...+........ ..
T Consensus 107 --------------------~~~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (302)
T d2p4oa1 107 --------------------LTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPA 166 (302)
T ss_dssp --------------------EECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCS
T ss_pred --------------------cccCCccccceeEEccCCCEEeeccccccceeeeccCCcceeEecCCccceeeccCcccc
Confidence 0001123456677766 5556666788888888887654332221 23
Q ss_pred eEEEEEecCCcEEEeecCCCeEEEEeccccchhhhhc--cCcCCcceEEEEecCCCCeEEEeeCCCcEEEEEecCCccee
Q psy18231 419 IVDACFTRDCQCILTCSTDECLRLFDKATGELLEEYK--GHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQIS 496 (540)
Q Consensus 419 i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~--~~~~~v~~~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~ 496 (540)
...+.++. +.++++.+..+.|+.++........... ........+ +++++|++.++...++.|..++. +++...
T Consensus 167 ~ngi~~~~-~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~pdgi--a~d~dG~l~va~~~~~~V~~i~p-~G~~~~ 242 (302)
T d2p4oa1 167 ANGLKRFG-NFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDF--AFDVEGNLYGATHIYNSVVRIAP-DRSTTI 242 (302)
T ss_dssp EEEEEEET-TEEEEEETTTTEEEEEEBCTTSCBCCCEEEEESCCCSSE--EEBTTCCEEEECBTTCCEEEECT-TCCEEE
T ss_pred cccccccC-CceeeecCCCCeEEeccccccccccccccccCCCCCcce--EECCCCCEEEEEcCCCcEEEECC-CCCEEE
Confidence 55666654 3456666778899988876543332221 112223345 89999998888888999998874 454433
Q ss_pred EEEecccceeeeEEEE---cCCCcEEEeec
Q psy18231 497 TLIHSVGKAVVNSLCS---HPTRKHIMSAC 523 (540)
Q Consensus 497 ~~~~~~~~~~v~~l~~---s~d~~~l~s~~ 523 (540)
.......-...++++| ++|++.|..++
T Consensus 243 ~~~~~~~~~~pt~vafg~~~~D~~~Lyvtt 272 (302)
T d2p4oa1 243 IAQAEQGVIGSTAVAFGQTEGDCTAIYVVT 272 (302)
T ss_dssp EECGGGTCTTEEEEEECCSTTTTTEEEEEE
T ss_pred EEecCCCCCCceEEEEcCCCCCCCEEEEEC
Confidence 3332233345889999 67888776543
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=99.22 E-value=1.3e-08 Score=91.66 Aligned_cols=253 Identities=9% Similarity=0.059 Sum_probs=151.2
Q ss_pred cCeEEEEeCCCCCEEEEeeC-------CCcEEEEcCCCCeeEEEeecC----CcceeEEEEeeCCCeEEEeeCCCeEEEE
Q psy18231 165 SGLMHTRFPVDGSYCLTCGS-------DKKIKLWNPYRNLLLKTYGGH----AHEVNDATAACDSSQIASGASDKSVILW 233 (540)
Q Consensus 165 ~~v~~v~~spdg~~lat~~~-------dg~i~iwd~~~~~~~~~~~~h----~~~v~~l~~sp~~~~l~s~s~dg~i~iw 233 (540)
...-.++|.|+|++.++... +|.|..||..++......... .+.-..++|.++++.|+++...+.|...
T Consensus 18 ~g~EGpa~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~dg~~l~vad~~~~i~~~ 97 (314)
T d1pjxa_ 18 PGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMRLGLLVV 97 (314)
T ss_dssp TTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETTTEEEEE
T ss_pred CCCeEeEEeCCCCEEEEECccccccccCCEEEEEECCCCcEEEEECCccccCCCcceeEEEeCCCCEEEEEECCCeEEEE
Confidence 34567899999997776432 467999998887654433211 2235679999999988888877788888
Q ss_pred EcCCCceeEeccccC----CceeEEEECCCCCEEEEecCCCcEEEEEecCCCCCCcchhhhhHhhhhcCCceeEEEEeec
Q psy18231 234 EVTTGQPVRRWREHA----SKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVK 309 (540)
Q Consensus 234 d~~~~~~~~~~~~h~----~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (540)
+...+.......... ...+.+++.++|++.++-.. +....|+....
T Consensus 98 ~~~g~~~~~~~~~~~g~~~~~pndl~~d~~G~lyvtd~~-~~~~~~~~~~~----------------------------- 147 (314)
T d1pjxa_ 98 QTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPA-GEVAPADYTRS----------------------------- 147 (314)
T ss_dssp ETTSCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECB-CBCTTSCCCBT-----------------------------
T ss_pred eCCCcEEEEEeccccccccCCCcEEEECCCCCEEEecCc-cCcccccccce-----------------------------
Confidence 876543222111111 13567888887776555321 11111110000
Q ss_pred ccccccccCceeeEEEeeeecccccceeeeeeccceeEEEeecccceecccccccccccchhhhhhcccccEEEEEecCC
Q psy18231 310 STKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEARDSITSVHVSDH 389 (540)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~ 389 (540)
..
T Consensus 148 ----------------------------------------------------------------~~-------------- 149 (314)
T d1pjxa_ 148 ----------------------------------------------------------------MQ-------------- 149 (314)
T ss_dssp ----------------------------------------------------------------TS--------------
T ss_pred ----------------------------------------------------------------ec--------------
Confidence 00
Q ss_pred eeEeeeCCCeEEEEeCCCCceEEeeeC-CceEEEEEecCCc-----EEEeecCCCeEEEEeccccchh------hhhccC
Q psy18231 390 EILTASLDCRIRRYDIRTGNLVTDYVG-EPIVDACFTRDCQ-----CILTCSTDECLRLFDKATGELL------EEYKGH 457 (540)
Q Consensus 390 ~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~i~~~~~sp~~~-----~l~~~~~dg~i~i~d~~~~~~~------~~~~~~ 457 (540)
..+|.|..++.+ ++......+ ..-+.++|+|+++ ++++-+..+.|..||+.....+ ..+...
T Consensus 150 -----~~~G~v~~~~~d-g~~~~~~~~~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~ 223 (314)
T d1pjxa_ 150 -----EKFGSIYCFTTD-GQMIQVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGT 223 (314)
T ss_dssp -----SSCEEEEEECTT-SCEEEEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCC
T ss_pred -----cCCceEEEEeec-CceeEeeCCcceeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEcccc
Confidence 011223333322 221111111 3346788888764 4555567788888887543222 111111
Q ss_pred c-CCcceEEEEecCCCCeEEEeeCCCcEEEEEecCCcceeEEEecccceeeeEEEEcCCCcE-EEeec-CCeeEEEEccc
Q psy18231 458 K-SGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKH-IMSAC-GNNVKLWTAEE 534 (540)
Q Consensus 458 ~-~~v~~~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~-l~s~~-d~~i~iw~~~~ 534 (540)
. ...-.+ ++..+|++.++....+.|.+||...++.+..+. .....+++++|.||++. .++.+ +++|...++..
T Consensus 224 ~~~~pdGi--avD~~GnlyVa~~~~g~I~~~dp~~g~~~~~i~--~p~~~~t~~afg~d~~~lyVt~~~~g~i~~~~~~~ 299 (314)
T d1pjxa_ 224 HEGGADGM--DFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIR--CPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp SSCEEEEE--EEBTTCCEEEEEETTTEEEEECTTCBSCSEEEE--CSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred ccccceee--EEecCCcEEEEEcCCCEEEEEeCCCCEEEEEEE--CCCCCEEEEEEeCCCCEEEEEECCCCcEEEEECCC
Confidence 1 111234 788999988887788999999987777777776 45567899999999974 45556 88888888754
Q ss_pred c
Q psy18231 535 D 535 (540)
Q Consensus 535 ~ 535 (540)
.
T Consensus 300 ~ 300 (314)
T d1pjxa_ 300 N 300 (314)
T ss_dssp C
T ss_pred C
Confidence 3
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=99.21 E-value=1e-09 Score=101.73 Aligned_cols=155 Identities=11% Similarity=0.125 Sum_probs=92.8
Q ss_pred EEEEEecC--CeeEeeeC-CCeEEEEeCCCCc-eE--Eee----eCCceEEEEEecCCcEEEeec-CCCeEEEEeccccc
Q psy18231 381 ITSVHVSD--HEILTASL-DCRIRRYDIRTGN-LV--TDY----VGEPIVDACFTRDCQCILTCS-TDECLRLFDKATGE 449 (540)
Q Consensus 381 v~~l~~~~--~~l~~~~~-dg~i~iwd~~~~~-~~--~~~----~~~~i~~~~~sp~~~~l~~~~-~dg~i~i~d~~~~~ 449 (540)
+.++.|+| ++++++.. ...|.+|+..... .. ... .+.....++|+|+++++++.. .+++|.+|++...+
T Consensus 147 ~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~~ 226 (365)
T d1jofa_ 147 IHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPAT 226 (365)
T ss_dssp EEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTT
T ss_pred ceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCCCCceEEEEECCCCceEEEeccCCCEEEEEEecCCC
Confidence 45566666 44444432 3456666544322 11 111 135788999999999886655 58899999987654
Q ss_pred hhhhhc-----------------cCcCCcceEEEEecCCCCeEEEeeC------CCcEEEEEecCCcceeEEE----ecc
Q psy18231 450 LLEEYK-----------------GHKSGDFRIECCLDSKDSQIFCGSS------DGKIYKWQLVDSSQISTLI----HSV 502 (540)
Q Consensus 450 ~~~~~~-----------------~~~~~v~~~~~~~s~~~~~l~s~s~------dg~i~iwd~~~~~~~~~~~----~~~ 502 (540)
...... ..........+.++|||++|+++.. .+.|..|++.....+.... ...
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~ 306 (365)
T d1jofa_ 227 HMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPT 306 (365)
T ss_dssp CCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSS
T ss_pred ceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEcccCCCccceEEEEEEecCCCceeeEeEeeEEEc
Confidence 321110 0011112334489999999887642 2337777776543333221 112
Q ss_pred cceeeeEEEEcC-CCcEEEeec--CCeeEEEEcccc
Q psy18231 503 GKAVVNSLCSHP-TRKHIMSAC--GNNVKLWTAEED 535 (540)
Q Consensus 503 ~~~~v~~l~~s~-d~~~l~s~~--d~~i~iw~~~~~ 535 (540)
.......++++| +|++|+++. ++.|.+|+++.+
T Consensus 307 ~G~~p~~i~~~p~~G~~l~va~~~s~~v~v~~~~~~ 342 (365)
T d1jofa_ 307 SGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp CCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred CCCCccEEEecCCCCCEEEEEeCCCCeEEEEEEeCC
Confidence 234567899998 899888776 899999988654
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.19 E-value=2.7e-08 Score=88.13 Aligned_cols=154 Identities=13% Similarity=0.182 Sum_probs=108.7
Q ss_pred cEEEEEecC--CeeEeeeCCCeEEEEeCCCCceEEeeeC----CceEEEEEecCCcEEEeecCCCeEEEEeccccchhhh
Q psy18231 380 SITSVHVSD--HEILTASLDCRIRRYDIRTGNLVTDYVG----EPIVDACFTRDCQCILTCSTDECLRLFDKATGELLEE 453 (540)
Q Consensus 380 ~v~~l~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~----~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~ 453 (540)
....+++.+ ..+++....+.+.+++.. ++.+..+.. .....+++.++++.+++....+.|++||. +++.+.+
T Consensus 115 ~p~~~avd~~G~i~v~~~~~~~~~~~~~~-g~~~~~~g~~~~~~~~~~i~~d~~g~i~v~d~~~~~V~~~d~-~G~~~~~ 192 (279)
T d1q7fa_ 115 HPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNY-EGQYLRQ 192 (279)
T ss_dssp CEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEET-TCCEEEE
T ss_pred ccceeccccCCcEEEEeeccceeeEeccC-CceeecccccccccccceeeeccceeEEeeeccccceeeeec-CCceeee
Confidence 345666665 455555666778888765 555555532 46788999999999999999999999996 4555555
Q ss_pred hcc--CcCCcceEEEEecCCCCeEEEeeC-CCcEEEEEecCCcceeEEEecccceeeeEEEEcCCCcEEEeecCCeeEEE
Q psy18231 454 YKG--HKSGDFRIECCLDSKDSQIFCGSS-DGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLW 530 (540)
Q Consensus 454 ~~~--~~~~v~~~~~~~s~~~~~l~s~s~-dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~d~~i~iw 530 (540)
+.. .......+ ++.++|+.+++-+. ++.|.+|+ .+|+.+.++...........|++.|||.++++..++.|++|
T Consensus 193 ~g~~g~~~~P~gi--avD~~G~i~Vad~~~~~~v~~f~-~~G~~~~~~~~~~~~~~p~~vav~~dG~l~V~~~n~~v~~f 269 (279)
T d1q7fa_ 193 IGGEGITNYPIGV--GINSNGEILIADNHNNFNLTIFT-QDGQLISALESKVKHAQCFDVALMDDGSVVLASKDYRLYIY 269 (279)
T ss_dssp ESCTTTSCSEEEE--EECTTCCEEEEECSSSCEEEEEC-TTSCEEEEEEESSCCSCEEEEEEETTTEEEEEETTTEEEEE
T ss_pred ecccccccCCccc--ccccCCeEEEEECCCCcEEEEEC-CCCCEEEEEeCCCCCCCEeEEEEeCCCcEEEEeCCCeEEEE
Confidence 532 22223344 89999997776543 45799998 67888888764344456889999999986655449999999
Q ss_pred EcccccCC
Q psy18231 531 TAEEDYGQ 538 (540)
Q Consensus 531 ~~~~~~~~ 538 (540)
+.......
T Consensus 270 r~~~~~~~ 277 (279)
T d1q7fa_ 270 RYVQLAPV 277 (279)
T ss_dssp ECSCCCCT
T ss_pred EeeeecCC
Confidence 98765443
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.19 E-value=1.2e-08 Score=90.07 Aligned_cols=232 Identities=13% Similarity=0.068 Sum_probs=136.9
Q ss_pred cEEEEcCCCCeeEEEeecCCcceeEEEEeeCCCeEEEeeCCC---eEEEEEcCCCceeEeccccCCceeEEEECCCCCEE
Q psy18231 187 KIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDK---SVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVV 263 (540)
Q Consensus 187 ~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~dg---~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l 263 (540)
.|.|-|.. |.....+..+...+.+.+|||||+.||-..... .+.+.+...+... .+..+........|+|+|+.+
T Consensus 20 ~l~i~d~d-G~~~~~l~~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~spdg~~i 97 (269)
T d2hqsa1 20 ELRVSDYD-GYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR-QVASFPRHNGAPAFSPDGSKL 97 (269)
T ss_dssp EEEEEETT-SCSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE-EEECCSSCEEEEEECTTSSEE
T ss_pred EEEEEcCC-CCCcEEEecCCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCcee-EEeeeecccccceecCCCCee
Confidence 57777764 444444444677888999999999998765433 4666666555543 444677888999999999988
Q ss_pred EEecC-CCcEEEEEecCCCCCCcchhhhhHhhhhcCCceeEEEEeecccccccccCceeeEEEeeeecccccceeeeeec
Q psy18231 264 ISGSQ-DNTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMS 342 (540)
Q Consensus 264 ~s~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (540)
+.... ++...++..........
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~--------------------------------------------------------- 120 (269)
T d2hqsa1 98 AFALSKTGSLNLYVMDLASGQIR--------------------------------------------------------- 120 (269)
T ss_dssp EEEECTTSSCEEEEEETTTCCEE---------------------------------------------------------
T ss_pred eEeeecCCccceeecccccccce---------------------------------------------------------
Confidence 76543 33333333322221000
Q ss_pred cceeEEEeecccceecccccccccccchhhhhhcccccEEEEEecC---CeeEeeeCCC--eEEEEeCCCCceEEeee-C
Q psy18231 343 TQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEARDSITSVHVSD---HEILTASLDC--RIRRYDIRTGNLVTDYV-G 416 (540)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~---~~l~~~~~dg--~i~iwd~~~~~~~~~~~-~ 416 (540)
.............+++ ..+++...+| .|.+.++..+....... .
T Consensus 121 ------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~~~~~~~~ 170 (269)
T d2hqsa1 121 ------------------------------QVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRITWEG 170 (269)
T ss_dssp ------------------------------ECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEECCCSS
T ss_pred ------------------------------eeeeccccccccccccccccceecccccCCceEeeeecccccceeeeccc
Confidence 0000111111222222 2344444444 45566666554433332 2
Q ss_pred CceEEEEEecCCcEEEeecCCC---eEEEEeccccchhhhhccCcCCcceEEEEecCCCCeEEEeeC---CCcEEEEEec
Q psy18231 417 EPIVDACFTRDCQCILTCSTDE---CLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSS---DGKIYKWQLV 490 (540)
Q Consensus 417 ~~i~~~~~sp~~~~l~~~~~dg---~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~s~~~~~l~s~s~---dg~i~iwd~~ 490 (540)
.......|+|+++.++..+.++ .+.+.|...+.. ....+....... .|||||++|+..+. ...|+++++.
T Consensus 171 ~~~~~~~~spdg~~~~~~~~~~~~~~i~~~~~~~~~~--~~~~~~~~~~~p--~~SPDG~~i~f~s~~~~~~~l~~~~~d 246 (269)
T d2hqsa1 171 SQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV--QVLSSTFLDETP--SLAPNGTMVIYSSSQGMGSVLNLVSTD 246 (269)
T ss_dssp SEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCE--EECCCSSSCEEE--EECTTSSEEEEEEEETTEEEEEEEETT
T ss_pred ccccccccccccceeEEEeecCCceeeeEeecccccc--eEeecCccccce--EECCCCCEEEEEEcCCCCcEEEEEECC
Confidence 4567789999999888766543 344455544432 222333344444 89999999875553 3468899976
Q ss_pred CCcceeEEEecccceeeeEEEEcC
Q psy18231 491 DSSQISTLIHSVGKAVVNSLCSHP 514 (540)
Q Consensus 491 ~~~~~~~~~~~~~~~~v~~l~~s~ 514 (540)
.+. ...+. ...+.+...+|||
T Consensus 247 g~~-~~~lt--~~~g~~~~p~WSP 267 (269)
T d2hqsa1 247 GRF-KARLP--ATDGQVKFPAWSP 267 (269)
T ss_dssp SCC-EEECC--CSSSEEEEEEECC
T ss_pred CCC-EEEEe--CCCCcEEeEEeCC
Confidence 554 45555 5667888999998
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.16 E-value=4e-09 Score=92.56 Aligned_cols=234 Identities=7% Similarity=0.019 Sum_probs=141.9
Q ss_pred ceeEEEEeeCCCeEEEe-eCCCeEEEEEcCCCceeEeccccCCceeEEEECCCCCEEEEecCCCcEEEEEecCCCCCCcc
Q psy18231 208 EVNDATAACDSSQIASG-ASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQ 286 (540)
Q Consensus 208 ~v~~l~~sp~~~~l~s~-s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 286 (540)
.-.++++.++|+..++. +..+.+..++............-......++++++++++++....+.+++++-.+... ..
T Consensus 15 ~P~~vavd~dG~i~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~gvav~~~g~i~v~d~~~~~i~~~~~~~~~~--~~ 92 (260)
T d1rwia_ 15 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDFNNRVVTLAAGSNNQT--VL 92 (260)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEEC----CEEECCCCSCCSCCCEEECTTCCEEEEETTTEEEEECTTCSCCE--EC
T ss_pred CCCEEEEcCCCCEEEEEcCCCCEEEEEcCCCceEEEeccCCccCceEEEEcCCCCEEEeeeeeceeeeeeecccee--ee
Confidence 45789999999976654 4557777776554433222222233467889999998777766655555544322210 00
Q ss_pred hhhhhHhhhhcCCceeEEEEeecccccccccCceeeEEEeeeecccccceeeeeeccceeEEEeecccceeccccccccc
Q psy18231 287 VRCLNEALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISI 366 (540)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (540)
T Consensus 93 -------------------------------------------------------------------------------- 92 (260)
T d1rwia_ 93 -------------------------------------------------------------------------------- 92 (260)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccchhhhhhcccccEEEEEecC--CeeEeeeCCCeEEEEeCCCCceEEee-eC-CceEEEEEecCCcEEEeecCCCeEEE
Q psy18231 367 HNSCFQALKEARDSITSVHVSD--HEILTASLDCRIRRYDIRTGNLVTDY-VG-EPIVDACFTRDCQCILTCSTDECLRL 442 (540)
Q Consensus 367 ~~~~~~~~~~~~~~v~~l~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~-~~-~~i~~~~~sp~~~~l~~~~~dg~i~i 442 (540)
. ........++++++ +++++-..+..+..++.......... .+ .....++++|+++++++...++.|..
T Consensus 93 ------~-~~~~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~~~v~~~~~~~i~~ 165 (260)
T d1rwia_ 93 ------P-FDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVK 165 (260)
T ss_dssp ------C-CCSCCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSCEECCCCSCCSCCEEEECTTCCEEEEEGGGTEEEE
T ss_pred ------e-eeeeeecccccccccceeEeeccccccccccccccceeeeeeecccCCcceeeecCCCCEeeeccccccccc
Confidence 0 00112345677766 44444455566777766554332221 22 45678999999999888888899999
Q ss_pred EeccccchhhhhccCcCCcceEEEEecCCCCeEEEeeCCCcEEEEEecCCcceeEEEecccceeeeEEEEcCCCcEEEee
Q psy18231 443 FDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSA 522 (540)
Q Consensus 443 ~d~~~~~~~~~~~~~~~~v~~~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~ 522 (540)
+|...................+ +++++|+++++-...+.|..++.. +.....+.. ..-.....|+++++|.++++-
T Consensus 166 ~d~~~~~~~~~~~~~~~~p~gi--~~d~~g~l~vsd~~~~~i~~~~~~-~~~~~~~~~-~~~~~P~~i~~d~~g~l~vad 241 (260)
T d1rwia_ 166 LEAESNNQVVLPFTDITAPWGI--AVDEAGTVYVTEHNTNQVVKLLAG-STTSTVLPF-TGLNTPLAVAVDSDRTVYVAD 241 (260)
T ss_dssp ECTTTCCEEECCCSSCCSEEEE--EECTTCCEEEEETTTTEEEEECTT-CSCCEECCC-CSCCCEEEEEECTTCCEEEEE
T ss_pred cccccceeeeeeccccCCCccc--eeeeeeeeeeeecCCCEEEEEeCC-CCeEEEEcc-CCCCCeEEEEEeCCCCEEEEE
Confidence 9976543322221222223344 889999988888888888888743 333333321 233567899999999887776
Q ss_pred c-CCeeEEEEccc
Q psy18231 523 C-GNNVKLWTAEE 534 (540)
Q Consensus 523 ~-d~~i~iw~~~~ 534 (540)
. +++|+..+..+
T Consensus 242 ~~~~rI~~i~~~~ 254 (260)
T d1rwia_ 242 RGNDRVVKLTSLE 254 (260)
T ss_dssp GGGTEEEEECCCG
T ss_pred CCCCEEEEEeCCC
Confidence 6 77777665543
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.10 E-value=1.2e-08 Score=89.46 Aligned_cols=231 Identities=9% Similarity=0.029 Sum_probs=142.0
Q ss_pred CeEEEEeCCCCCEEEE-eeCCCcEEEEcCCCCeeEEEeecCCcceeEEEEeeCCCeEEEeeCCCeEEEEEcCCCceeEec
Q psy18231 166 GLMHTRFPVDGSYCLT-CGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPVRRW 244 (540)
Q Consensus 166 ~v~~v~~spdg~~lat-~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~ 244 (540)
.-..++++++|+..++ .+..+.+..++............-......++++++++++++....+.+++++-.+...+...
T Consensus 15 ~P~~vavd~dG~i~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~gvav~~~g~i~v~d~~~~~i~~~~~~~~~~~~~~ 94 (260)
T d1rwia_ 15 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDFNNRVVTLAAGSNNQTVLPF 94 (260)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEEC----CEEECCCCSCCSCCCEEECTTCCEEEEETTTEEEEECTTCSCCEECCC
T ss_pred CCCEEEEcCCCCEEEEEcCCCCEEEEEcCCCceEEEeccCCccCceEEEEcCCCCEEEeeeeeceeeeeeeccceeeeee
Confidence 4578999999996555 455677777775544322222222234578899999998888777777777765555544333
Q ss_pred cccCCceeEEEECCCCCEEEEecCCCcEEEEEecCCCCCCcchhhhhHhhhhcCCceeEEEEeecccccccccCceeeEE
Q psy18231 245 REHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHLSNGLLTKLV 324 (540)
Q Consensus 245 ~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (540)
. .......+++.++++++++-..+..+..++..........
T Consensus 95 ~-~~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~~~~~-------------------------------------- 135 (260)
T d1rwia_ 95 D-GLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLP-------------------------------------- 135 (260)
T ss_dssp C-SCCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSCEECC--------------------------------------
T ss_pred e-eeeecccccccccceeEeeccccccccccccccceeeeee--------------------------------------
Confidence 2 2356789999999887776655565666554332210000
Q ss_pred EeeeecccccceeeeeeccceeEEEeecccceecccccccccccchhhhhhcccccEEEEEecC--CeeEeeeCCCeEEE
Q psy18231 325 FAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEARDSITSVHVSD--HEILTASLDCRIRR 402 (540)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~--~~l~~~~~dg~i~i 402 (540)
........++++++ +.+++...++.|..
T Consensus 136 --------------------------------------------------~~~~~~p~~i~~~~~g~~~v~~~~~~~i~~ 165 (260)
T d1rwia_ 136 --------------------------------------------------FTGLNDPDGVAVDNSGNVYVTDTDNNRVVK 165 (260)
T ss_dssp --------------------------------------------------CCSCCSCCEEEECTTCCEEEEEGGGTEEEE
T ss_pred --------------------------------------------------ecccCCcceeeecCCCCEeeeccccccccc
Confidence 00011224566666 55666677788999
Q ss_pred EeCCCCceEEee-e-CCceEEEEEecCCcEEEeecCCCeEEEEeccccchhhhhc-cCcCCcceEEEEecCCCCeEEEee
Q psy18231 403 YDIRTGNLVTDY-V-GEPIVDACFTRDCQCILTCSTDECLRLFDKATGELLEEYK-GHKSGDFRIECCLDSKDSQIFCGS 479 (540)
Q Consensus 403 wd~~~~~~~~~~-~-~~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~v~~~~~~~s~~~~~l~s~s 479 (540)
+|.+........ . ......++++++|+++++....+.|..++...... ..+. ..-.....+ +++++|.++++-.
T Consensus 166 ~d~~~~~~~~~~~~~~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~~~~~-~~~~~~~~~~P~~i--~~d~~g~l~vad~ 242 (260)
T d1rwia_ 166 LEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTS-TVLPFTGLNTPLAV--AVDSDRTVYVADR 242 (260)
T ss_dssp ECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTTEEEEECTTCSCC-EECCCCSCCCEEEE--EECTTCCEEEEEG
T ss_pred cccccceeeeeeccccCCCccceeeeeeeeeeeecCCCEEEEEeCCCCeE-EEEccCCCCCeEEE--EEeCCCCEEEEEC
Confidence 998765443322 2 24578899999999988888889999888654322 1111 111222344 7888888777766
Q ss_pred CCCcEEEEE
Q psy18231 480 SDGKIYKWQ 488 (540)
Q Consensus 480 ~dg~i~iwd 488 (540)
.++.|+..+
T Consensus 243 ~~~rI~~i~ 251 (260)
T d1rwia_ 243 GNDRVVKLT 251 (260)
T ss_dssp GGTEEEEEC
T ss_pred CCCEEEEEe
Confidence 666666544
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.09 E-value=8.5e-08 Score=84.84 Aligned_cols=238 Identities=11% Similarity=0.206 Sum_probs=154.1
Q ss_pred cCeEEEEeCCCCCEEEEeeCCCcEEEEcCCCCeeEEEeecC------CcceeEEEEeeCCC-eEEE-eeCCCeEEEEEcC
Q psy18231 165 SGLMHTRFPVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGH------AHEVNDATAACDSS-QIAS-GASDKSVILWEVT 236 (540)
Q Consensus 165 ~~v~~v~~spdg~~lat~~~dg~i~iwd~~~~~~~~~~~~h------~~~v~~l~~sp~~~-~l~s-~s~dg~i~iwd~~ 236 (540)
.....++++++|+.+++-...+.|++||. +++.+..+... ...-..+++.++.. .+++ .+.++.|..++.
T Consensus 23 ~~P~gvavd~dg~i~VaD~~n~rI~v~d~-~G~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~~~- 100 (279)
T d1q7fa_ 23 TEPSGVAVNAQNDIIVADTNNHRIQIFDK-EGRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQ- 100 (279)
T ss_dssp SCEEEEEECTTCCEEEEEGGGTEEEEECT-TSCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECT-
T ss_pred CCccEEEEcCCCCEEEEECCCCEEEEEeC-CCCEEEEecccCCCcccccccccccccccccccceeccCCccccccccc-
Confidence 34678999999998877777889999995 57777766321 11234556655433 3333 344567777775
Q ss_pred CCceeEecc-ccCCceeEEEECCCCCEEEEecCCCcEEEEEecCCCCCCcchhhhhHhhhhcCCceeEEEEeeccccccc
Q psy18231 237 TGQPVRRWR-EHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHL 315 (540)
Q Consensus 237 ~~~~~~~~~-~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (540)
.++....+. ........+++.+++.++++....+.+.+++...... .
T Consensus 101 ~g~~~~~~~~~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~~g~~~---~----------------------------- 148 (279)
T d1q7fa_ 101 YGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNGNVL---H----------------------------- 148 (279)
T ss_dssp TSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTSCEE---E-----------------------------
T ss_pred cccceeecCCCcccccceeccccCCcEEEEeeccceeeEeccCCcee---e-----------------------------
Confidence 566555543 3455678899999888877777667677765432110 0
Q ss_pred ccCceeeEEEeeeecccccceeeeeeccceeEEEeecccceecccccccccccchhhhhhcccccEEEEEecC--CeeEe
Q psy18231 316 SNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEARDSITSVHVSD--HEILT 393 (540)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~--~~l~~ 393 (540)
.+ ....+......+++.+ +.+++
T Consensus 149 ---------------------------------~~----------------------g~~~~~~~~~~i~~d~~g~i~v~ 173 (279)
T d1q7fa_ 149 ---------------------------------KF----------------------GCSKHLEFPNGVVVNDKQEIFIS 173 (279)
T ss_dssp ---------------------------------EE----------------------ECTTTCSSEEEEEECSSSEEEEE
T ss_pred ---------------------------------cc----------------------cccccccccceeeeccceeEEee
Confidence 00 0012234456667766 55666
Q ss_pred eeCCCeEEEEeCCCCceEEeeeC----CceEEEEEecCCcEEEeecC-CCeEEEEeccccchhhhhccCcCCcceEEEEe
Q psy18231 394 ASLDCRIRRYDIRTGNLVTDYVG----EPIVDACFTRDCQCILTCST-DECLRLFDKATGELLEEYKGHKSGDFRIECCL 468 (540)
Q Consensus 394 ~~~dg~i~iwd~~~~~~~~~~~~----~~i~~~~~sp~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~ 468 (540)
....+.|.+||.. ++.+.++.. .....+++.++|+++++-.. ++.|.+|+ .+|+.+.++...........+++
T Consensus 174 d~~~~~V~~~d~~-G~~~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~-~~G~~~~~~~~~~~~~~p~~vav 251 (279)
T d1q7fa_ 174 DNRAHCVKVFNYE-GQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFT-QDGQLISALESKVKHAQCFDVAL 251 (279)
T ss_dssp EGGGTEEEEEETT-CCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEEC-TTSCEEEEEEESSCCSCEEEEEE
T ss_pred eccccceeeeecC-CceeeeecccccccCCcccccccCCeEEEEECCCCcEEEEEC-CCCCEEEEEeCCCCCCCEeEEEE
Confidence 6778899999975 566666632 35789999999998877544 45799998 46777766654332222334488
Q ss_pred cCCCCeEEEeeCCCcEEEEEecCCcc
Q psy18231 469 DSKDSQIFCGSSDGKIYKWQLVDSSQ 494 (540)
Q Consensus 469 s~~~~~l~s~s~dg~i~iwd~~~~~~ 494 (540)
.++|.++ +++.++.|++|......+
T Consensus 252 ~~dG~l~-V~~~n~~v~~fr~~~~~~ 276 (279)
T d1q7fa_ 252 MDDGSVV-LASKDYRLYIYRYVQLAP 276 (279)
T ss_dssp ETTTEEE-EEETTTEEEEEECSCCCC
T ss_pred eCCCcEE-EEeCCCeEEEEEeeeecC
Confidence 8998754 456789999999876544
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.04 E-value=2.1e-07 Score=81.72 Aligned_cols=218 Identities=13% Similarity=0.069 Sum_probs=128.2
Q ss_pred eeeeeecCeEEEEeCCCCCEEEEeeCC---CcEEEEcCCCCeeEEEeecCCcceeEEEEeeCCCeEEEeeCC-Ce--EEE
Q psy18231 159 RELFVLSGLMHTRFPVDGSYCLTCGSD---KKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASD-KS--VIL 232 (540)
Q Consensus 159 ~~~~h~~~v~~v~~spdg~~lat~~~d---g~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~d-g~--i~i 232 (540)
....+.+.+.+.+|||||++||-.... ..+.+.+...+.. ..+..+.+......|+|+|+.++..... +. +..
T Consensus 33 ~l~~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~spdg~~i~~~~~~~~~~~~~~ 111 (269)
T d2hqsa1 33 VVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAV-RQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYV 111 (269)
T ss_dssp EEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EEEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEE
T ss_pred EEecCCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCce-eEEeeeecccccceecCCCCeeeEeeecCCccceee
Confidence 444567788999999999999965432 2466667655554 4455578888999999999998876543 32 333
Q ss_pred EEcCCCceeEeccccCCceeEEEECCCCCEEE-EecCCCcEEEEEe--cCCCCCCcchhhhhHhhhhcCCceeEEEEeec
Q psy18231 233 WEVTTGQPVRRWREHASKVTCVKFNEDSSVVI-SGSQDNTVMMWDV--KSRSHHPIQVRCLNEALKEARDSITSVHSLVK 309 (540)
Q Consensus 233 wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~-s~~~dg~i~iwd~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (540)
+......... ............+++++..++ +...+|...+|.. ......
T Consensus 112 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~~-------------------------- 164 (269)
T d2hqsa1 112 MDLASGQIRQ-VTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQ-------------------------- 164 (269)
T ss_dssp EETTTCCEEE-CCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCE--------------------------
T ss_pred ccccccccee-eeeccccccccccccccccceecccccCCceEeeeecccccce--------------------------
Confidence 3333333322 333444455566777665444 4445555444443 333210
Q ss_pred ccccccccCceeeEEEeeeecccccceeeeeeccceeEEEeecccceecccccccccccchhhhhhcccccEEEEEecC-
Q psy18231 310 STKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEARDSITSVHVSD- 388 (540)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~- 388 (540)
.+...........++|
T Consensus 165 ---------------------------------------------------------------~~~~~~~~~~~~~~spd 181 (269)
T d2hqsa1 165 ---------------------------------------------------------------RITWEGSQNQDADVSSD 181 (269)
T ss_dssp ---------------------------------------------------------------ECCCSSSEEEEEEECTT
T ss_pred ---------------------------------------------------------------eeecccccccccccccc
Confidence 1112233445556776
Q ss_pred -CeeEeeeC-CC--eEEEEeCCCCceEEeeeCCceEEEEEecCCcEEEeecC---CCeEEEEeccccchhhhhccCcCCc
Q psy18231 389 -HEILTASL-DC--RIRRYDIRTGNLVTDYVGEPIVDACFTRDCQCILTCST---DECLRLFDKATGELLEEYKGHKSGD 461 (540)
Q Consensus 389 -~~l~~~~~-dg--~i~iwd~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~---dg~i~i~d~~~~~~~~~~~~~~~~v 461 (540)
..++..+. .+ .+.+.+...+...............|||||+.|+..+. ...|+++++..+.. ..+....+.+
T Consensus 182 g~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~p~~SPDG~~i~f~s~~~~~~~l~~~~~dg~~~-~~lt~~~g~~ 260 (269)
T d2hqsa1 182 GKFMVMVSSNGGQQHIAKQDLATGGVQVLSSTFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFK-ARLPATDGQV 260 (269)
T ss_dssp SSEEEEEEECSSCEEEEEEETTTCCEEECCCSSSCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCCE-EECCCSSSEE
T ss_pred cceeEEEeecCCceeeeEeecccccceEeecCccccceEECCCCCEEEEEEcCCCCcEEEEEECCCCCE-EEEeCCCCcE
Confidence 44444443 33 34555666555444444456778899999999876553 35688999876654 3344444434
Q ss_pred ceEEEEecC
Q psy18231 462 FRIECCLDS 470 (540)
Q Consensus 462 ~~~~~~~s~ 470 (540)
... +|||
T Consensus 261 ~~p--~WSP 267 (269)
T d2hqsa1 261 KFP--AWSP 267 (269)
T ss_dssp EEE--EECC
T ss_pred EeE--EeCC
Confidence 333 7877
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=99.01 E-value=6.1e-07 Score=80.78 Aligned_cols=232 Identities=9% Similarity=0.084 Sum_probs=138.7
Q ss_pred CcceeEEEEeeCCCeEEEeeCCCeEEEEEcCCCceeEeccccCCceeEEEECCCCCEEEEecCC--CcEEEEEecCCCCC
Q psy18231 206 AHEVNDATAACDSSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQD--NTVMMWDVKSRSHH 283 (540)
Q Consensus 206 ~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d--g~i~iwd~~~~~~~ 283 (540)
...+..++|.++|++.++-..++.|..|+...++....+.........++++++|+++++...+ ....++.+......
T Consensus 39 ~~~lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~~~~~~~~~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~~~~~~ 118 (319)
T d2dg1a1 39 GLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDN 118 (319)
T ss_dssp CCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCS
T ss_pred CcCcEeCEECCCCCEEEEECCCCEEEEEECCCCeEEEEEeCCCCCeeEEEECCCCCEEEEecCCCccceeEEEEcCCCce
Confidence 3445689999999988887788999999987776666555566678999999999877765332 23334433322100
Q ss_pred CcchhhhhHhhhhcCCceeEEEEeecccccccccCceeeEEEeeeecccccceeeeeeccceeEEEeecccceecccccc
Q psy18231 284 PIQVRCLNEALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTP 363 (540)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (540)
... . .
T Consensus 119 ~~~-----------------~---~------------------------------------------------------- 123 (319)
T d2dg1a1 119 LQD-----------------I---I------------------------------------------------------- 123 (319)
T ss_dssp CEE-----------------E---E-------------------------------------------------------
T ss_pred eee-----------------e---c-------------------------------------------------------
Confidence 000 0 0
Q ss_pred cccccchhhhhhcccccEEEEEecC-CeeEeeeC-------CCeEEEEeCCCCceEEeeeC-CceEEEEEecCCcEE-Ee
Q psy18231 364 ISIHNSCFQALKEARDSITSVHVSD-HEILTASL-------DCRIRRYDIRTGNLVTDYVG-EPIVDACFTRDCQCI-LT 433 (540)
Q Consensus 364 ~~~~~~~~~~~~~~~~~v~~l~~~~-~~l~~~~~-------dg~i~iwd~~~~~~~~~~~~-~~i~~~~~sp~~~~l-~~ 433 (540)
...........+++.+ ..+..+.. .+.+..++.+.+.......+ ...+.++|+|+++.| ++
T Consensus 124 ---------~~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg~~~~~~~~~~~~pnGia~s~dg~~lyva 194 (319)
T d2dg1a1 124 ---------EDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQNISVANGIALSTDEKVLWVT 194 (319)
T ss_dssp ---------CSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEEESSEEEEEECTTSSEEEEE
T ss_pred ---------cCCCcccCCcceeEEeccceeecccccccccCcceeEEEecccceeEEEeeccceeeeeeeccccceEEEe
Confidence 0000011233445554 22333221 13355555543332222222 456789999999865 45
Q ss_pred ecCCCeEEEEecccc-chhhhhc-----cCcCCcceEEEEecCCCCeEEEeeCCCcEEEEEecCCcceeEEEecc----c
Q psy18231 434 CSTDECLRLFDKATG-ELLEEYK-----GHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSV----G 503 (540)
Q Consensus 434 ~~~dg~i~i~d~~~~-~~~~~~~-----~~~~~v~~~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~----~ 503 (540)
-+..+.|+.||+... ....... .....-.--.+++.++|++.++....+.|.+|| .+|+.+..+..+. +
T Consensus 195 d~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~~g~V~~~~-p~G~~l~~i~~P~~~~~~ 273 (319)
T d2dg1a1 195 ETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFN-KRGYPIGQILIPGRDEGH 273 (319)
T ss_dssp EGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEEC-TTSCEEEEEECTTGGGTC
T ss_pred cccCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEEEEcCCCEEEEEC-CCCcEEEEEeCCCcCCCc
Confidence 566789999987532 1111110 000000111238899999888888899999999 6899988887432 3
Q ss_pred ceeeeEEEEcCCCcEEEee
Q psy18231 504 KAVVNSLCSHPTRKHIMSA 522 (540)
Q Consensus 504 ~~~v~~l~~s~d~~~l~s~ 522 (540)
...+++++|.+++..+++.
T Consensus 274 ~~~~~~~~~~~~~~~~~~t 292 (319)
T d2dg1a1 274 MLRSTHPQFIPGTNQLIIC 292 (319)
T ss_dssp SCBCCEEEECTTSCEEEEE
T ss_pred CceeeeEEEeCCCCEEEEE
Confidence 4468899999988766654
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.00 E-value=1.2e-07 Score=90.12 Aligned_cols=338 Identities=12% Similarity=0.077 Sum_probs=176.3
Q ss_pred cceeeeecccccceee-e-----eecCeEEEEeCCCCCEEEEee---------CCCcEEEEcCCCCeeEEEee--cCCcc
Q psy18231 146 EWSIRVYRPLTVNREL-F-----VLSGLMHTRFPVDGSYCLTCG---------SDKKIKLWNPYRNLLLKTYG--GHAHE 208 (540)
Q Consensus 146 ~~~i~~~~~~~~~~~~-~-----h~~~v~~v~~spdg~~lat~~---------~dg~i~iwd~~~~~~~~~~~--~h~~~ 208 (540)
++.|.+|+..+..... . ..-.+....||||+++|+... ..+.+.++|+.++....... .....
T Consensus 36 ~g~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~~~~~l~~~~~~~~~ 115 (465)
T d1xfda1 36 KGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNAK 115 (465)
T ss_dssp SSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCSCC
T ss_pred CCcEEEEECCCCCEEEEEcCccccccccceeEECCCCCeEEEEEcccceeEeeccccEEEEEccCCceeeccCccCCccc
Confidence 3456666665543221 1 123567788999999988653 35788999998886543322 23445
Q ss_pred eeEEEEeeCCCeEEEeeCCCeEEEEEcCCCceeEecc-ccCCc-----------------eeEEEECCCCCEEEEecC-C
Q psy18231 209 VNDATAACDSSQIASGASDKSVILWEVTTGQPVRRWR-EHASK-----------------VTCVKFNEDSSVVISGSQ-D 269 (540)
Q Consensus 209 v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~h~~~-----------------v~~~~~~~~~~~l~s~~~-d 269 (540)
+....|||||+.||-.. ++.|.+.+...+..++... +..+. -..+.|||||++|+.... +
T Consensus 116 l~~~~wSPDG~~iafv~-~~nl~~~~~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~WSPDgk~iaf~~~D~ 194 (465)
T d1xfda1 116 LQYAGWGPKGQQLIFIF-ENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAIND 194 (465)
T ss_dssp CSBCCBCSSTTCEEEEE-TTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEEC
T ss_pred cceeeeccCCceEEEEe-cceEEEEecCCCceEEEecccCcceeeccccchhhhhhhccccceEEECCCCCeEEEEEecc
Confidence 66789999999998876 5678888887776554432 11111 247789999999998753 3
Q ss_pred CcEEEEEecCCCCCCcchhhhhHhhhhcCCceeEEEEeecccccccccCceeeEEEeeeecccccceeeeeeccceeEEE
Q psy18231 270 NTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVL 349 (540)
Q Consensus 270 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (540)
..+..+.+......... ...... .+. .+ . ......+.+
T Consensus 195 s~V~~~~~~~~~~~~~p-------------~~~~~~-Yp~-------~G------------~---------~np~~~l~v 232 (465)
T d1xfda1 195 SRVPIMELPTYTGSIYP-------------TVKPYH-YPK-------AG------------S---------ENPSISLHV 232 (465)
T ss_dssp TTSCEEEECCCSSSSSC-------------CCEEEE-CCB-------TT------------S---------CCCEEEEEE
T ss_pred cccceeecccccccccc-------------eeeeee-ccc-------cC------------C---------CCCceeEEE
Confidence 44555555332100000 000000 000 00 0 001112333
Q ss_pred eecccceecccccccccccchhhhhhcccccEEEEEecC-CeeEeeeC--C---CeEEEEeCCCCceEEeeeC---C---
Q psy18231 350 LDFLGSTQIGDVTPISIHNSCFQALKEARDSITSVHVSD-HEILTASL--D---CRIRRYDIRTGNLVTDYVG---E--- 417 (540)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~-~~l~~~~~--d---g~i~iwd~~~~~~~~~~~~---~--- 417 (540)
++..+........+. ........-+..+.|++ +.+++... + ..+.++|..+++....+.. .
T Consensus 233 ~d~~~~~~~~~~~~~-------~~~~~~~~y~~~~~W~~d~~~~~~~~nR~q~~~~i~~~d~~tg~~~~~~~e~~~~wv~ 305 (465)
T d1xfda1 233 IGLNGPTHDLEMMPP-------DDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLH 305 (465)
T ss_dssp EESSSSCCCEECCCC-------CCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCC
T ss_pred EecCCCcEEEEEecc-------CcCccccceeeeeEEcCCCeEEEEEEccccccceEEEEcCCCCcEEEEEEEcCCceEe
Confidence 343322211111100 01122334567788888 44443322 2 3578899999876554432 1
Q ss_pred -ceEEEEEecCCcEEEe---ecCCC--eEEEEecc------ccchhhhhccCcCCcceEEEEecCCCCeEE-EeeCCC--
Q psy18231 418 -PIVDACFTRDCQCILT---CSTDE--CLRLFDKA------TGELLEEYKGHKSGDFRIECCLDSKDSQIF-CGSSDG-- 482 (540)
Q Consensus 418 -~i~~~~~sp~~~~l~~---~~~dg--~i~i~d~~------~~~~~~~~~~~~~~v~~~~~~~s~~~~~l~-s~s~dg-- 482 (540)
.-....|+|||+.++. ...+| .++.+++. .++.+..+....-.|..+ ..++.+++.|+ ++..++
T Consensus 306 ~~~~~p~~~~dg~~~~fi~~se~~g~~~ly~~~~~~~~~~~~~~~~~~LT~G~w~V~~i-~~~d~~~~~vyF~a~~~~p~ 384 (465)
T d1xfda1 306 RQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKI-LAYDEKGNKIYFLSTEDLPR 384 (465)
T ss_dssp CCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEE-EEEETTTTEEEEEESSSCTT
T ss_pred ccCCceeEccCCCeeEEEEeeeecccCceEEEEeccccccCCCceeEEeccCCceEEEE-EEEcCCCCEEEEEEeCCCCC
Confidence 1234678999985432 22232 34444332 233334444333334444 26788877754 444332
Q ss_pred cEEEEEe--cCCcceeEEEe-cccceeeeEEEEcCCCcEEEeec---C-CeeEEEEccc
Q psy18231 483 KIYKWQL--VDSSQISTLIH-SVGKAVVNSLCSHPTRKHIMSAC---G-NNVKLWTAEE 534 (540)
Q Consensus 483 ~i~iwd~--~~~~~~~~~~~-~~~~~~v~~l~~s~d~~~l~s~~---d-~~i~iw~~~~ 534 (540)
.-.+|.+ ..+.....+.. ........++.|||++++++... + -.+.+++..+
T Consensus 385 ~~hly~v~l~g~~~~~~lt~~~~~~~~~~~~~~S~~~~y~v~~~s~~~~P~~~~~~~~~ 443 (465)
T d1xfda1 385 RRQLYSANTVGNFNRQCLSCDLVENCTYFSASFSHSMDFFLLKCEGPGVPMVTVHNTTD 443 (465)
T ss_dssp CCEEEEECSSTTCCCBCSSTTSSSSCCCCEEEECTTSSEEEEECCSSSSCCEEEEETTT
T ss_pred ceEEEEEECCCCCcceeeccccCCCCCEEEEEECCCCCEEEEEeecCCCCeEEEEECCC
Confidence 2334444 33322222210 02345677999999999988544 1 2566666543
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=98.87 E-value=1.1e-06 Score=79.10 Aligned_cols=224 Identities=12% Similarity=0.099 Sum_probs=138.7
Q ss_pred eEEEEeCCCCCEEEEeeCCCcEEEEcCCCCeeEEEeecCCcceeEEEEeeCCCeEEEeeCC----CeEEEEEcCCCceeE
Q psy18231 167 LMHTRFPVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASD----KSVILWEVTTGQPVR 242 (540)
Q Consensus 167 v~~v~~spdg~~lat~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~d----g~i~iwd~~~~~~~~ 242 (540)
+..++|.++|++.++-...+.|..|+.++++....+.........+++++||+++++...+ +.+...+...+....
T Consensus 42 lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~~~~~~~~~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~~~~~~~~~ 121 (319)
T d2dg1a1 42 LEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQD 121 (319)
T ss_dssp EEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEE
T ss_pred cEeCEECCCCCEEEEECCCCEEEEEECCCCeEEEEEeCCCCCeeEEEECCCCCEEEEecCCCccceeEEEEcCCCceeee
Confidence 4688999999977777788999999988877666665566778899999999988775432 345555554444433
Q ss_pred eccc--cCCceeEEEECCCCCEEEEecCCC----cEEEEEecCCCCCCcchhhhhHhhhhcCCceeEEEEeecccccccc
Q psy18231 243 RWRE--HASKVTCVKFNEDSSVVISGSQDN----TVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHLS 316 (540)
Q Consensus 243 ~~~~--h~~~v~~~~~~~~~~~l~s~~~dg----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (540)
.... -....+.+.+.++|++.++..... .-.+|.+....
T Consensus 122 ~~~~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg----------------------------------- 166 (319)
T d2dg1a1 122 IIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDF----------------------------------- 166 (319)
T ss_dssp EECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTS-----------------------------------
T ss_pred eccCCCcccCCcceeEEeccceeecccccccccCcceeEEEeccc-----------------------------------
Confidence 3221 133467888999988665532110 11112111100
Q ss_pred cCceeeEEEeeeecccccceeeeeeccceeEEEeecccceecccccccccccchhhhhhcccccEEEEEecC--Cee-Ee
Q psy18231 317 NGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEARDSITSVHVSD--HEI-LT 393 (540)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~--~~l-~~ 393 (540)
+. +..+...-.....++|++ +.| ++
T Consensus 167 ----------------------------~~------------------------~~~~~~~~~~pnGia~s~dg~~lyva 194 (319)
T d2dg1a1 167 ----------------------------RT------------------------VTPIIQNISVANGIALSTDEKVLWVT 194 (319)
T ss_dssp ----------------------------CC------------------------EEEEEEEESSEEEEEECTTSSEEEEE
T ss_pred ----------------------------ce------------------------eEEEeeccceeeeeeeccccceEEEe
Confidence 00 000011122346788887 444 55
Q ss_pred eeCCCeEEEEeCCCC-ceEEee--------eC-CceEEEEEecCCcEEEeecCCCeEEEEeccccchhhhhcc------C
Q psy18231 394 ASLDCRIRRYDIRTG-NLVTDY--------VG-EPIVDACFTRDCQCILTCSTDECLRLFDKATGELLEEYKG------H 457 (540)
Q Consensus 394 ~~~dg~i~iwd~~~~-~~~~~~--------~~-~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~------~ 457 (540)
-+..+.|..||++.. ...... .+ .....+++.++|++.++....+.|.+||. +++.+.++.. +
T Consensus 195 d~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~~g~V~~~~p-~G~~l~~i~~P~~~~~~ 273 (319)
T d2dg1a1 195 ETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGRDEGH 273 (319)
T ss_dssp EGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECTTGGGTC
T ss_pred cccCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEEEEcCCCEEEEECC-CCcEEEEEeCCCcCCCc
Confidence 567889999988643 111111 11 23567999999999888888999999995 6877666542 2
Q ss_pred cCCcceEEEEecCCCCeEEEeeC
Q psy18231 458 KSGDFRIECCLDSKDSQIFCGSS 480 (540)
Q Consensus 458 ~~~v~~~~~~~s~~~~~l~s~s~ 480 (540)
...++++ +|.+++..+++.+.
T Consensus 274 ~~~~~~~--~~~~~~~~~~~t~~ 294 (319)
T d2dg1a1 274 MLRSTHP--QFIPGTNQLIICSN 294 (319)
T ss_dssp SCBCCEE--EECTTSCEEEEEEE
T ss_pred CceeeeE--EEeCCCCEEEEEcC
Confidence 2234444 78888777665543
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=98.77 E-value=1.6e-06 Score=79.71 Aligned_cols=116 Identities=8% Similarity=0.129 Sum_probs=74.0
Q ss_pred CceEEEEEecCCcEEEeecC-CCeEEEEecccc-ch--hhhhcc--CcCCcceEEEEecCCCCeEEEe-eCCCcEEEEEe
Q psy18231 417 EPIVDACFTRDCQCILTCST-DECLRLFDKATG-EL--LEEYKG--HKSGDFRIECCLDSKDSQIFCG-SSDGKIYKWQL 489 (540)
Q Consensus 417 ~~i~~~~~sp~~~~l~~~~~-dg~i~i~d~~~~-~~--~~~~~~--~~~~v~~~~~~~s~~~~~l~s~-s~dg~i~iwd~ 489 (540)
..+.++.|+|||+++++++. ...|.+|+.... .. ...... .......+ +|+|+++++++. -.+++|.+|++
T Consensus 145 ~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i--~f~pdg~~~yv~~e~~~~V~v~~~ 222 (365)
T d1jofa_ 145 TGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWV--AMHPTGNYLYALMEAGNRICEYVI 222 (365)
T ss_dssp CCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEE--EECTTSSEEEEEETTTTEEEEEEE
T ss_pred CcceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCCCCceEEE--EECCCCceEEEeccCCCEEEEEEe
Confidence 35789999999998887754 467888876432 21 111111 11223334 899999987555 46789999998
Q ss_pred cCCcceeEEEe-----------------cccceeeeEEEEcCCCcEEEeec--CC-----eeEEEEccc
Q psy18231 490 VDSSQISTLIH-----------------SVGKAVVNSLCSHPTRKHIMSAC--GN-----NVKLWTAEE 534 (540)
Q Consensus 490 ~~~~~~~~~~~-----------------~~~~~~v~~l~~s~d~~~l~s~~--d~-----~i~iw~~~~ 534 (540)
...+....... ..+......+.++|||++|+++. +. .|..|++..
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~ 291 (365)
T d1jofa_ 223 DPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRD 291 (365)
T ss_dssp CTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECT
T ss_pred cCCCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEcccCCCccceEEEEEEecC
Confidence 77654332210 01223466889999999998874 33 366676653
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=98.71 E-value=2.6e-06 Score=76.28 Aligned_cols=70 Identities=7% Similarity=0.125 Sum_probs=53.7
Q ss_pred eEEEEEecCCcEEEeecCCCeEEEEeccccchhhhhccCcCCcceEEEEecCCCCe-EEEeeCCCcEEEEEec
Q psy18231 419 IVDACFTRDCQCILTCSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQ-IFCGSSDGKIYKWQLV 490 (540)
Q Consensus 419 i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~s~~~~~-l~s~s~dg~i~iwd~~ 490 (540)
...+++.++|++.++....+.|.+||.+.++.+..+.......+.+ +|.+|++. +++.+.+|.|...++.
T Consensus 228 pdGiavD~~GnlyVa~~~~g~I~~~dp~~g~~~~~i~~p~~~~t~~--afg~d~~~lyVt~~~~g~i~~~~~~ 298 (314)
T d1pjxa_ 228 ADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNL--HFKPQTKTIFVTEHENNAVWKFEWQ 298 (314)
T ss_dssp EEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEECSSSCEEEE--EECTTSSEEEEEETTTTEEEEEECS
T ss_pred ceeeEEecCCcEEEEEcCCCEEEEEeCCCCEEEEEEECCCCCEEEE--EEeCCCCEEEEEECCCCcEEEEECC
Confidence 4578999999988888788999999988887776666554445555 89999875 5666677888887764
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=98.69 E-value=1e-06 Score=77.62 Aligned_cols=95 Identities=14% Similarity=0.066 Sum_probs=67.9
Q ss_pred EeCCC--CCEEEEeeCCCcEEEEcCCCCeeEEEeecCCcceeEEEEeeCCCeEEEeeC-C-----CeEEEEEcCCCceeE
Q psy18231 171 RFPVD--GSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGAS-D-----KSVILWEVTTGQPVR 242 (540)
Q Consensus 171 ~~spd--g~~lat~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~-d-----g~i~iwd~~~~~~~~ 242 (540)
..||| |+.+|-.+ +|.|.+.|+.+++.. .+..+.+.+...+|||||+.||-... + ..|.+++..+++..+
T Consensus 5 ~~sPdi~G~~v~f~~-~~dl~~~d~~~g~~~-~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~~ 82 (281)
T d1k32a2 5 LLNPDIHGDRIIFVC-CDDLWEHDLKSGSTR-KIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKR 82 (281)
T ss_dssp CEEEEEETTEEEEEE-TTEEEEEETTTCCEE-EEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEE
T ss_pred ccCCCCCCCEEEEEe-CCcEEEEECCCCCEE-EEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCceEE
Confidence 35788 99988654 577888899887754 56667788899999999999986532 2 247777877776554
Q ss_pred eccc------cCCceeEEEECCCCCEEEEec
Q psy18231 243 RWRE------HASKVTCVKFNEDSSVVISGS 267 (540)
Q Consensus 243 ~~~~------h~~~v~~~~~~~~~~~l~s~~ 267 (540)
.... .........|+|+|+.|+...
T Consensus 83 lt~~~~~~~~~~~~~~~~~~spdg~~l~~~~ 113 (281)
T d1k32a2 83 ITYFSGKSTGRRMFTDVAGFDPDGNLIISTD 113 (281)
T ss_dssp CCCCCEEEETTEECSEEEEECTTCCEEEEEC
T ss_pred eeecCCCccCccccccccccCCCCCEEEEEE
Confidence 3211 123456788999999888753
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.54 E-value=1.2e-06 Score=83.07 Aligned_cols=109 Identities=12% Similarity=0.122 Sum_probs=79.4
Q ss_pred EeCCCCCEEEEeeCCCcEEEEcCCCCeeEEEeecC---CcceeEEEEeeCCCeEEEee---------CCCeEEEEEcCCC
Q psy18231 171 RFPVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGH---AHEVNDATAACDSSQIASGA---------SDKSVILWEVTTG 238 (540)
Q Consensus 171 ~~spdg~~lat~~~dg~i~iwd~~~~~~~~~~~~h---~~~v~~l~~sp~~~~l~s~s---------~dg~i~iwd~~~~ 238 (540)
.|.+++.++.. ..+|.|.+||+.+++....+..+ .-.+....||||+++++... ..+.+.++|+.++
T Consensus 23 ~W~~~~~~~~~-~~~g~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~ 101 (465)
T d1xfda1 23 KWISDTEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHG 101 (465)
T ss_dssp CBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSC
T ss_pred EEeCCCcEEEE-eCCCcEEEEECCCCCEEEEEcCccccccccceeEECCCCCeEEEEEcccceeEeeccccEEEEEccCC
Confidence 47788877654 45789999999888765444332 23677889999999987753 3578999999988
Q ss_pred ceeEec--cccCCceeEEEECCCCCEEEEecCCCcEEEEEecCCC
Q psy18231 239 QPVRRW--REHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRS 281 (540)
Q Consensus 239 ~~~~~~--~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~ 281 (540)
+..... ......+....|||||+.||-.. ++.|.+.+..++.
T Consensus 102 ~~~~l~~~~~~~~~l~~~~wSPDG~~iafv~-~~nl~~~~~~~~~ 145 (465)
T d1xfda1 102 DPQSLDPPEVSNAKLQYAGWGPKGQQLIFIF-ENNIYYCAHVGKQ 145 (465)
T ss_dssp CCEECCCTTCCSCCCSBCCBCSSTTCEEEEE-TTEEEEESSSSSC
T ss_pred ceeeccCccCCccccceeeeccCCceEEEEe-cceEEEEecCCCc
Confidence 754432 23345567789999999998875 5778888776654
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=98.47 E-value=0.00019 Score=63.10 Aligned_cols=220 Identities=11% Similarity=0.082 Sum_probs=131.2
Q ss_pred EEEeCC-CCCEEEEeeCCCcEEEEcCCCCeeEEEeecCCcceeEEEEeeCCCeEEEeeCCCeEEEEEcCCCceeEecc--
Q psy18231 169 HTRFPV-DGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPVRRWR-- 245 (540)
Q Consensus 169 ~v~~sp-dg~~lat~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-- 245 (540)
+..|++ ++++..+--..+.|..||.++++.. .+. ....+.++++.+++.++++ +.+ .+.++|..+++......
T Consensus 22 gp~wd~~~~~l~wvDi~~~~I~r~d~~~g~~~-~~~-~~~~~~~i~~~~dg~l~va-~~~-gl~~~d~~tg~~~~l~~~~ 97 (295)
T d2ghsa1 22 GPTFDPASGTAWWFNILERELHELHLASGRKT-VHA-LPFMGSALAKISDSKQLIA-SDD-GLFLRDTATGVLTLHAELE 97 (295)
T ss_dssp EEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EEE-CSSCEEEEEEEETTEEEEE-ETT-EEEEEETTTCCEEEEECSS
T ss_pred CCeEECCCCEEEEEECCCCEEEEEECCCCeEE-EEE-CCCCcEEEEEecCCCEEEE-EeC-ccEEeecccceeeEEeeee
Confidence 345776 4445455556789999999888653 333 3557889999999877665 444 58899998887543322
Q ss_pred c--cCCceeEEEECCCCCEEEEecCCCcEEEEEecCCCCCCcchhhhhHhhhhcCCceeEEEEeecccccccccCceeeE
Q psy18231 246 E--HASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHLSNGLLTKL 323 (540)
Q Consensus 246 ~--h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (540)
. ....++.+.+.|+|++.++...+ ...
T Consensus 98 ~~~~~~~~nd~~vd~~G~iw~~~~~~----------~~~----------------------------------------- 126 (295)
T d2ghsa1 98 SDLPGNRSNDGRMHPSGALWIGTMGR----------KAE----------------------------------------- 126 (295)
T ss_dssp TTCTTEEEEEEEECTTSCEEEEEEET----------TCC-----------------------------------------
T ss_pred cCCCcccceeeEECCCCCEEEEeccc----------ccc-----------------------------------------
Confidence 1 12356778888877755543211 000
Q ss_pred EEeeeecccccceeeeeeccceeEEEeecccceecccccccccccchhhhhhcccccEEEEEecCCeeEeeeCCCeEEEE
Q psy18231 324 VFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEARDSITSVHVSDHEILTASLDCRIRRY 403 (540)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~dg~i~iw 403 (540)
.+.-.+|
T Consensus 127 -------------------------------------------------------------------------~~~g~l~ 133 (295)
T d2ghsa1 127 -------------------------------------------------------------------------TGAGSIY 133 (295)
T ss_dssp -------------------------------------------------------------------------TTCEEEE
T ss_pred -------------------------------------------------------------------------ccceeEe
Confidence 0001112
Q ss_pred eCCCCceEEeeeC-CceEEEEEecCCcEEE-eecCCCeEEEEeccccc--hh------hhhccCcCCcceEEEEecCCCC
Q psy18231 404 DIRTGNLVTDYVG-EPIVDACFTRDCQCIL-TCSTDECLRLFDKATGE--LL------EEYKGHKSGDFRIECCLDSKDS 473 (540)
Q Consensus 404 d~~~~~~~~~~~~-~~i~~~~~sp~~~~l~-~~~~dg~i~i~d~~~~~--~~------~~~~~~~~~v~~~~~~~s~~~~ 473 (540)
.+..++......+ ...+.++|+++++.++ +-+..+.|+.|++.... .. ..+.+..+....+ ++..+|+
T Consensus 134 ~~~~g~~~~~~~~~~~~Ng~~~s~d~~~l~~~dt~~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~--~vD~~Gn 211 (295)
T d2ghsa1 134 HVAKGKVTKLFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGS--VCDAEGH 211 (295)
T ss_dssp EEETTEEEEEEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEE--EECTTSC
T ss_pred eecCCcEEEEeeccCCcceeeecCCCceEEEeecccceeeEeeecccccccccceEEEeccCcccccccce--EEcCCCC
Confidence 2222222222221 3456788888887554 44557788888764211 11 1111122223334 7889998
Q ss_pred eEEEeeCCCcEEEEEecCCcceeEEEecccceeeeEEEEc-CCCcEEEe
Q psy18231 474 QIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSH-PTRKHIMS 521 (540)
Q Consensus 474 ~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s-~d~~~l~s 521 (540)
+.++.-..+.|..|| .+++.+..+.. ....+++++|- ||.+.|+.
T Consensus 212 lWva~~~~g~V~~~d-p~G~~~~~i~l--P~~~~T~~~FGG~d~~~Lyv 257 (295)
T d2ghsa1 212 IWNARWGEGAVDRYD-TDGNHIARYEV--PGKQTTCPAFIGPDASRLLV 257 (295)
T ss_dssp EEEEEETTTEEEEEC-TTCCEEEEEEC--SCSBEEEEEEESTTSCEEEE
T ss_pred EEeeeeCCCceEEec-CCCcEeeEecC--CCCceEEEEEeCCCCCEEEE
Confidence 877777778899999 68999998884 34568999995 66655543
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=98.21 E-value=4.8e-05 Score=66.49 Aligned_cols=67 Identities=7% Similarity=0.097 Sum_probs=47.6
Q ss_pred EEeeC--CCeEEEeeCCCeEEEEEcCCCceeEeccccCCceeEEEECCCCCEEEEecC-CC-----cEEEEEecCCC
Q psy18231 213 TAACD--SSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQ-DN-----TVMMWDVKSRS 281 (540)
Q Consensus 213 ~~sp~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~-dg-----~i~iwd~~~~~ 281 (540)
..+|| |+.+|-.+ ++.|.+.|+..++.. .+..+.+.+....|||||+.|+.... ++ .|.+++..+++
T Consensus 5 ~~sPdi~G~~v~f~~-~~dl~~~d~~~g~~~-~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~ 79 (281)
T d1k32a2 5 LLNPDIHGDRIIFVC-CDDLWEHDLKSGSTR-KIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGE 79 (281)
T ss_dssp CEEEEEETTEEEEEE-TTEEEEEETTTCCEE-EEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTE
T ss_pred ccCCCCCCCEEEEEe-CCcEEEEECCCCCEE-EEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCc
Confidence 46898 99888765 467888899887754 45667778899999999998886532 22 25555555444
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=98.18 E-value=0.00076 Score=59.03 Aligned_cols=133 Identities=11% Similarity=0.056 Sum_probs=87.7
Q ss_pred ccceeeeecccccceee-eeecCeEEEEeCCCCCEEEEeeCCCcEEEEcCCCCeeEEEeec----CCcceeEEEEeeCCC
Q psy18231 145 KEWSIRVYRPLTVNREL-FVLSGLMHTRFPVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGG----HAHEVNDATAACDSS 219 (540)
Q Consensus 145 ~~~~i~~~~~~~~~~~~-~h~~~v~~v~~spdg~~lat~~~dg~i~iwd~~~~~~~~~~~~----h~~~v~~l~~sp~~~ 219 (540)
....|..|++.+..... .....+.++++.++|+++++ +.+ -+.++|..+++....... ....++.+.+.|+|+
T Consensus 38 ~~~~I~r~d~~~g~~~~~~~~~~~~~i~~~~dg~l~va-~~~-gl~~~d~~tg~~~~l~~~~~~~~~~~~nd~~vd~~G~ 115 (295)
T d2ghsa1 38 LERELHELHLASGRKTVHALPFMGSALAKISDSKQLIA-SDD-GLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGA 115 (295)
T ss_dssp GGTEEEEEETTTTEEEEEECSSCEEEEEEEETTEEEEE-ETT-EEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSC
T ss_pred CCCEEEEEECCCCeEEEEECCCCcEEEEEecCCCEEEE-EeC-ccEEeecccceeeEEeeeecCCCcccceeeEECCCCC
Confidence 34556666666654332 23466889999999987765 444 588999988875443321 123578899999999
Q ss_pred eEEEeeCC----CeEEEEEcCCCceeEeccccCCceeEEEECCCCCEEE-EecCCCcEEEEEecCC
Q psy18231 220 QIASGASD----KSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVI-SGSQDNTVMMWDVKSR 280 (540)
Q Consensus 220 ~l~s~s~d----g~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~-s~~~dg~i~iwd~~~~ 280 (540)
+.++...+ +.-.+|.+..++...... .-...+.++|+++++.++ +-+..+.|..+++...
T Consensus 116 iw~~~~~~~~~~~~g~l~~~~~g~~~~~~~-~~~~~Ng~~~s~d~~~l~~~dt~~~~I~~~~~d~~ 180 (295)
T d2ghsa1 116 LWIGTMGRKAETGAGSIYHVAKGKVTKLFA-DISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDAR 180 (295)
T ss_dssp EEEEEEETTCCTTCEEEEEEETTEEEEEEE-EESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTT
T ss_pred EEEEeccccccccceeEeeecCCcEEEEee-ccCCcceeeecCCCceEEEeecccceeeEeeeccc
Confidence 77765432 345677777776544443 334568899999988654 5556778888887543
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Probab=98.17 E-value=0.0009 Score=61.23 Aligned_cols=114 Identities=12% Similarity=0.137 Sum_probs=74.5
Q ss_pred EEEEeCCCCCEEEEeeCCC-----------cEEEEcCCCCeeEE--Ee-ecCCcceeEEEEeeCCCeEEEeeCC-CeEEE
Q psy18231 168 MHTRFPVDGSYCLTCGSDK-----------KIKLWNPYRNLLLK--TY-GGHAHEVNDATAACDSSQIASGASD-KSVIL 232 (540)
Q Consensus 168 ~~v~~spdg~~lat~~~dg-----------~i~iwd~~~~~~~~--~~-~~h~~~v~~l~~sp~~~~l~s~s~d-g~i~i 232 (540)
.......+|+.++.|+.+. .+.+||+.+++-.. .. ..|.......++.+++++++.|+.+ ..+.+
T Consensus 23 ~~a~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~i~v~Gg~~~~~~~~ 102 (387)
T d1k3ia3 23 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSL 102 (387)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEE
T ss_pred EEEEEeeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCcccceeEEEEecCCcEEEeecCCCcceeE
Confidence 3444566888888887521 37799998875322 22 2233334566788999999988765 58999
Q ss_pred EEcCCCceeEeccc-cCCceeEEEECCCCCEEEEecCC------CcEEEEEecCCC
Q psy18231 233 WEVTTGQPVRRWRE-HASKVTCVKFNEDSSVVISGSQD------NTVMMWDVKSRS 281 (540)
Q Consensus 233 wd~~~~~~~~~~~~-h~~~v~~~~~~~~~~~l~s~~~d------g~i~iwd~~~~~ 281 (540)
||..+......-.. ....-...+..+|++.++.++.+ ..+.+||+.+.+
T Consensus 103 yd~~~~~w~~~~~~~~~r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~~~ 158 (387)
T d1k3ia3 103 YDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKT 158 (387)
T ss_dssp EEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTE
T ss_pred ecCccCcccccccccccccccceeeecCCceeeeccccccccccceeeeecCCCCc
Confidence 99988765432111 11223456777899998888753 358888887764
|
| >d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=97.94 E-value=0.0021 Score=61.80 Aligned_cols=80 Identities=18% Similarity=0.105 Sum_probs=49.1
Q ss_pred CeEEEEeccccchhhhhccCcCCcceEEEEecCCCCeEEEeeCCCcEEEEEecCCcceeEEEecccceeeeEEEEcCCCc
Q psy18231 438 ECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRK 517 (540)
Q Consensus 438 g~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~ 517 (540)
|.|.-+|+.+++.+-+...-....... .+-.+.++++|+.||.++.+|.++|+.+-++..... ..-.-+.|..||+
T Consensus 444 G~l~AiD~~TG~~~W~~~~~~~~~~g~---l~TagglVf~G~~dg~l~A~Da~tGe~lW~~~l~~~-~~a~P~ty~~dGk 519 (571)
T d2ad6a1 444 GQIRAFDLTTGKAKWTKWEKFAAWGGT---LYTKGGLVWYATLDGYLKALDNKDGKELWNFKMPSG-GIGSPMTYSFKGK 519 (571)
T ss_dssp EEEEEECTTTCCEEEEEEESSCCCSBC---EEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSC-CCSCCEEEEETTE
T ss_pred ccEEEeccCCCceeeEcCCCCCCCcce---eEecCCEEEEECCCCeEEEEECCCCcEEEEEECCCC-ceecceEEEECCE
Confidence 457777777777665443222111111 122456888899999999999999999988874221 1122245555775
Q ss_pred -EEEe
Q psy18231 518 -HIMS 521 (540)
Q Consensus 518 -~l~s 521 (540)
|+++
T Consensus 520 qYi~v 524 (571)
T d2ad6a1 520 QYIGS 524 (571)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 5543
|
| >d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Pseudomonas putida, hk5 [TaxId: 303]
Probab=97.93 E-value=0.00039 Score=67.01 Aligned_cols=103 Identities=15% Similarity=0.102 Sum_probs=62.9
Q ss_pred EEEEeeCCCcEEEEcCCCCeeEEEeecCCc----------ce-eEEEEeeCCCeEEEeeCCCeEEEEEcCCCceeEeccc
Q psy18231 178 YCLTCGSDKKIKLWNPYRNLLLKTYGGHAH----------EV-NDATAACDSSQIASGASDKSVILWEVTTGQPVRRWRE 246 (540)
Q Consensus 178 ~lat~~~dg~i~iwd~~~~~~~~~~~~h~~----------~v-~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~ 246 (540)
.|..++.++.|.-.|.++|+.+.++..... .+ ..++. .+..++.+..|+.+.-.|..+|+.+.....
T Consensus 68 ~vyv~t~~~~v~AlDa~tG~~lW~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~g~l~Alda~tG~~~w~~~~ 145 (560)
T d1kv9a2 68 VIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVAL--WGDKVYVGTLDGRLIALDAKTGKAIWSQQT 145 (560)
T ss_dssp EEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--EBTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred EEEEECCCCeEEEEeCCCCCEEEEECCCCCccccccccccccccCcce--eCCeEEEEeCCCEEEEEECCCCcEEeccCc
Confidence 556667788999999999999988742211 00 11222 245688888999999999999998876643
Q ss_pred cCCc-eeEEEECC--CCCEEEEecC------CCcEEEEEecCCCC
Q psy18231 247 HASK-VTCVKFNE--DSSVVISGSQ------DNTVMMWDVKSRSH 282 (540)
Q Consensus 247 h~~~-v~~~~~~~--~~~~l~s~~~------dg~i~iwd~~~~~~ 282 (540)
+... -..+.-.| .+..++.++. .|.|.-+|.++++.
T Consensus 146 ~~~~~~~~~~~~p~v~~~~vivg~~~~~~~~~G~v~a~D~~TG~~ 190 (560)
T d1kv9a2 146 TDPAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKL 190 (560)
T ss_dssp SCTTSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCE
T ss_pred cCcccceeeeeeeeeecCcccccccceeccccceEEEEECCCceE
Confidence 2111 01111111 1223444332 36788888888874
|
| >d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Clathrin heavy-chain terminal domain family: Clathrin heavy-chain terminal domain domain: Clathrin heavy-chain terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=97.93 E-value=0.0042 Score=52.40 Aligned_cols=244 Identities=10% Similarity=0.103 Sum_probs=145.8
Q ss_pred ceeeeecccccceeeeeecCeEEEEeCCCCCEEEEeeCCCcEEEEcCCCCeeEEEeecCCcceeEEEEeeCCCeEEEeeC
Q psy18231 147 WSIRVYRPLTVNRELFVLSGLMHTRFPVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGAS 226 (540)
Q Consensus 147 ~~i~~~~~~~~~~~~~h~~~v~~v~~spdg~~lat~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~ 226 (540)
..+.+.+.........+.-.--+.-.+|..+.||.-+ ..++.++|+++.+.++.+.- ...|.-=.|-. .+.|+-.+.
T Consensus 45 ~~VvIidl~n~~~~~Rrpi~AdsAIMhP~~~IiALra-g~~LQiFnletK~klks~~~-~e~VvfWkWis-~~~L~lVT~ 121 (327)
T d1utca2 45 AQVVIIDMNDPSNPIRRPISADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTM-TDDVTFWKWIS-LNTVALVTD 121 (327)
T ss_dssp EEEEEEETTSTTSCEEEECCCSEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEEEC-SSCCCEEEESS-SSEEEEECS
T ss_pred ceEEEEECCCCCcceecccchhhhhcCCCCcEEEEec-CCeEEEEehhHhhhhceEEc-CCCcEEEEecC-CCEEEEEcC
Confidence 3455555544333223232334455689999988766 56899999999999998874 44665566664 345555543
Q ss_pred CCeEEEEEcCCC-ceeEeccccC----CceeEEEECCCCCEEEEec---C----CCcEEEEEecCCCCCCcchhhhhHhh
Q psy18231 227 DKSVILWEVTTG-QPVRRWREHA----SKVTCVKFNEDSSVVISGS---Q----DNTVMMWDVKSRSHHPIQVRCLNEAL 294 (540)
Q Consensus 227 dg~i~iwd~~~~-~~~~~~~~h~----~~v~~~~~~~~~~~l~s~~---~----dg~i~iwd~~~~~~~~~~~~~~~~~~ 294 (540)
..|.-|+++.. .+.+.+..|. ..|..-..+++.++++..| . .|.+.+|..+.....
T Consensus 122 -taVYHW~~~g~s~P~k~fdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~er~~sQ----------- 189 (327)
T d1utca2 122 -NAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQ----------- 189 (327)
T ss_dssp -SEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTTEEE-----------
T ss_pred -CceEEEcccCCCCchhhhhhcccccCceEEEEEECCCCCEEEEEeEecCCCceeEEEEEEEeccCcCc-----------
Confidence 57999999543 4555555443 4577777788888766533 1 245666666554321
Q ss_pred hhcCCceeEEEEeecccccccccCceeeEEEeeeecccccceeeeeeccceeEEEeecccceecccccccccccchhhhh
Q psy18231 295 KEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQAL 374 (540)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (540)
.+
T Consensus 190 ------------------------------------------------------------------------------~i 191 (327)
T d1utca2 190 ------------------------------------------------------------------------------PI 191 (327)
T ss_dssp ------------------------------------------------------------------------------EE
T ss_pred ------------------------------------------------------------------------------cc
Confidence 22
Q ss_pred hcccccEEEEEecC-----CeeEe---eeCCCeEEEEeCCCCc---e-----EEeee------CCceEEEEEecCCcEEE
Q psy18231 375 KEARDSITSVHVSD-----HEILT---ASLDCRIRRYDIRTGN---L-----VTDYV------GEPIVDACFTRDCQCIL 432 (540)
Q Consensus 375 ~~~~~~v~~l~~~~-----~~l~~---~~~dg~i~iwd~~~~~---~-----~~~~~------~~~i~~~~~sp~~~~l~ 432 (540)
++|...-..+.+.. ..++. +...+++.+-++.... . ...+. ++--.++..|+....+.
T Consensus 192 eGhaa~F~~~~~~g~~~~~~lf~fa~r~~~~~kLhIiEig~~~~g~~~f~kk~vdi~fppea~~DFPvamqvs~kygiiy 271 (327)
T d1utca2 192 EGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVF 271 (327)
T ss_dssp CCSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSCCCTTCCCCCCEEEECCCCTTCTTCCEEEEEEETTTTEEE
T ss_pred cceeeeeEEEEcCCCCCCceEEEEEECCCCCcEEEEEEcCCCccCCCCCcceeEEEECCccccCCcEEEEEeeccCCEEE
Confidence 23332222222221 11111 1223678888876521 1 11111 23467888999889999
Q ss_pred eecCCCeEEEEeccccchhhhhccCcCCcceEEEEecCCCCeEEEeeCCCcEE
Q psy18231 433 TCSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIY 485 (540)
Q Consensus 433 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~s~~~~~l~s~s~dg~i~ 485 (540)
.-+.-|.+++||++++.++..-+-....|... +.+.+..=+++...+|.|.
T Consensus 272 viTK~G~i~lyDleTgt~i~~nRIs~~~iF~~--a~~~~~~Gi~~VNr~GqVl 322 (327)
T d1utca2 272 LITKYGYIHLYDLETGTCIYMNRISGETIFVT--APHEATAGIIGVNRKGQVL 322 (327)
T ss_dssp EEETTSEEEEEETTTCCEEEEEECCSSCEEEE--EEETTTTEEEEEETTSEEE
T ss_pred EEecCcEEEEEEcccccEEEEeecCCCceEEe--ccCCCCceEEEECCCCeEE
Confidence 99999999999999999887766656655533 3333333455555666654
|
| >d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Comamonas testosteroni [TaxId: 285]
Probab=97.86 E-value=0.0023 Score=61.67 Aligned_cols=105 Identities=16% Similarity=0.150 Sum_probs=64.1
Q ss_pred CCCEEEEeeCCCcEEEEcCCCCeeEEEeecCC----------cce-eEEEEeeCCCeEEEeeCCCeEEEEEcCCCceeEe
Q psy18231 175 DGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHA----------HEV-NDATAACDSSQIASGASDKSVILWEVTTGQPVRR 243 (540)
Q Consensus 175 dg~~lat~~~dg~i~iwd~~~~~~~~~~~~h~----------~~v-~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~ 243 (540)
+| .|.+++.++.|.-+|.++|+.+.++.... ..+ ..+.+. +..++.++.|+.+.-.|..+|+.+..
T Consensus 77 ~g-~vyv~t~~~~v~AlDa~TG~~~W~~~~~~~~~~~~~~~~~~~~~g~~~~--~~~v~~~t~~g~l~alda~tG~~~W~ 153 (573)
T d1kb0a2 77 DG-IMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVALW--KGKVYVGAWDGRLIALDAATGKEVWH 153 (573)
T ss_dssp TT-EEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEEE--TTEEEEECTTSEEEEEETTTCCEEEE
T ss_pred CC-EEEEECCCCeEEEEeCCCCCeEEEeCCCCCcccccccccccccccceEE--CCcEEEEecccceeeeccccccceec
Confidence 44 56667778999999999999998874211 011 122232 34577788899999999999998765
Q ss_pred ccc--cCCceeEEEECC--CCCEEEEecC------CCcEEEEEecCCCC
Q psy18231 244 WRE--HASKVTCVKFNE--DSSVVISGSQ------DNTVMMWDVKSRSH 282 (540)
Q Consensus 244 ~~~--h~~~v~~~~~~~--~~~~l~s~~~------dg~i~iwd~~~~~~ 282 (540)
... +...-..+.-.| -+..+++++. .|.|.-+|.++++.
T Consensus 154 ~~~~~~~~~~~~~~~~p~v~~~~vivg~~~~~~~~~G~v~a~D~~TG~~ 202 (573)
T d1kb0a2 154 QNTFEGQKGSLTITGAPRVFKGKVIIGNGGAEYGVRGYITAYDAETGER 202 (573)
T ss_dssp EETTTTCCSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCE
T ss_pred ccCccCCcceEEeecceEEEeccEEEeeccccccccceEEEEecCCccc
Confidence 432 111101111111 1334555432 46799999998874
|
| >d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=97.80 E-value=0.0022 Score=61.72 Aligned_cols=105 Identities=13% Similarity=0.112 Sum_probs=61.7
Q ss_pred CCCEEEEeeCCCcEEEEcC-CCCeeEEEeecCCc----ce-------eEEEEeeCCCeEEEeeCCCeEEEEEcCCCceeE
Q psy18231 175 DGSYCLTCGSDKKIKLWNP-YRNLLLKTYGGHAH----EV-------NDATAACDSSQIASGASDKSVILWEVTTGQPVR 242 (540)
Q Consensus 175 dg~~lat~~~dg~i~iwd~-~~~~~~~~~~~h~~----~v-------~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~ 242 (540)
+|...++.+.++.|.-.|. ++|+.+.++..... .. ..+++. +..++.++.|+.+.-.|.++|+.+.
T Consensus 62 ~g~vyv~t~~~~~v~Alda~~tG~~~W~~~~~~~~~~~~~~~~~~~~rg~a~~--~~~i~~~~~~g~l~alda~tG~~~w 139 (571)
T d2ad6a1 62 GDMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAYG--AGQIVKKQANGHLLALDAKTGKINW 139 (571)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEEE--TTEEEEECTTSEEEEEETTTCCEEE
T ss_pred CCEEEEecCCCCeEEEEeCCCCCceEEEecCCCCcccccccccCcCCCcceee--CCeEEEEeCCCcEEeeehhhhhhhc
Confidence 4544343344678888887 47998888742110 00 123443 4467788899999999999999876
Q ss_pred eccccC----CceeEEEECCCCCEEEEec------CCCcEEEEEecCCCC
Q psy18231 243 RWREHA----SKVTCVKFNEDSSVVISGS------QDNTVMMWDVKSRSH 282 (540)
Q Consensus 243 ~~~~h~----~~v~~~~~~~~~~~l~s~~------~dg~i~iwd~~~~~~ 282 (540)
...... ..++.--.-.++ .++.+. .+|.|.-+|+.+++.
T Consensus 140 ~~~~~~~~~~~~~t~~p~v~~~-~vivg~~~~~~~~~G~v~a~D~~TG~~ 188 (571)
T d2ad6a1 140 EVEVCDPKVGSTLTQAPFVAKD-TVLMGCSGAELGVRGAVNAFDLKTGEL 188 (571)
T ss_dssp EEECCCGGGTCBCCSCCEEETT-EEEEECBCGGGTCCCEEEEEETTTCCE
T ss_pred cccccccccccceeecCeEeCC-eEEEeeccccccccCcEEEEECCCCcE
Confidence 543211 111110000133 444444 367899999999873
|
| >d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylobacterium extorquens [TaxId: 408]
Probab=97.78 E-value=0.0063 Score=58.67 Aligned_cols=108 Identities=17% Similarity=0.128 Sum_probs=65.0
Q ss_pred CCCEEEEeeCCCcEEEEcC-CCCeeEEEeecCCc----c-------eeEEEEeeC----CCeEEEeeCCCeEEEEEcCCC
Q psy18231 175 DGSYCLTCGSDKKIKLWNP-YRNLLLKTYGGHAH----E-------VNDATAACD----SSQIASGASDKSVILWEVTTG 238 (540)
Q Consensus 175 dg~~lat~~~dg~i~iwd~-~~~~~~~~~~~h~~----~-------v~~l~~sp~----~~~l~s~s~dg~i~iwd~~~~ 238 (540)
+|...++++.++.+...|. ++|+.+.++..... . -..+++.++ +.+++.++.|+.|.-.|.++|
T Consensus 62 ~g~ly~~t~~~~~v~a~d~~~tG~~~W~~~~~~~~~~~~~~~~~~~~RGv~~~~~~~~~~~~v~~~t~dg~l~Alda~tG 141 (596)
T d1w6sa_ 62 DGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETG 141 (596)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTC
T ss_pred CCEEEEeeCCCCcEEEEeCCCCCCEEEEecCCCCcccccccccccccceeEEecCCCCCceEEEEEeCCCCeEeeccccC
Confidence 4544444555567777775 57888887642110 0 134555543 346888999999999999999
Q ss_pred ceeEeccccCCce-eEEEECC--CCCEEEEecC------CCcEEEEEecCCCC
Q psy18231 239 QPVRRWREHASKV-TCVKFNE--DSSVVISGSQ------DNTVMMWDVKSRSH 282 (540)
Q Consensus 239 ~~~~~~~~h~~~v-~~~~~~~--~~~~l~s~~~------dg~i~iwd~~~~~~ 282 (540)
+.+..+....... ..+.-.| -+..++.+.. .|.|+-+|.++++.
T Consensus 142 ~~~w~~~~~d~~~~~~~t~~P~v~~~~vivg~~~~e~~~~G~v~A~Da~TG~~ 194 (596)
T d1w6sa_ 142 ETVWKVENSDIKVGSTLTIAPYVVKDKVIIGSSGAELGVRGYLTAYDVKTGEQ 194 (596)
T ss_dssp CEEEEEECCCGGGTCBCCSCCEEETTEEEECCBCGGGTCCCEEEEEETTTCCE
T ss_pred ceeccccccccccccccccCCcEECCeEEEeeccccccccCceEEEECCCCcE
Confidence 9888764211100 0111112 1345555543 48899999999883
|
| >d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylobacterium extorquens [TaxId: 408]
Probab=97.77 E-value=0.0026 Score=61.43 Aligned_cols=69 Identities=16% Similarity=0.123 Sum_probs=46.7
Q ss_pred CCEEEEeeCCCcEEEEcCCCCeeEEEeecCC----cceeEEEEeeCCCeEEEeeC------CCeEEEEEcCCCceeEecc
Q psy18231 176 GSYCLTCGSDKKIKLWNPYRNLLLKTYGGHA----HEVNDATAACDSSQIASGAS------DKSVILWEVTTGQPVRRWR 245 (540)
Q Consensus 176 g~~lat~~~dg~i~iwd~~~~~~~~~~~~h~----~~v~~l~~sp~~~~l~s~s~------dg~i~iwd~~~~~~~~~~~ 245 (540)
+.+|+.++.|+.|.-.|.++|+++..+.... ..+++--.- .+..++.+.. .|.|+-+|.++|+.+..+.
T Consensus 121 ~~~v~~~t~dg~l~Alda~tG~~~w~~~~~d~~~~~~~t~~P~v-~~~~vivg~~~~e~~~~G~v~A~Da~TG~~~W~~~ 199 (596)
T d1w6sa_ 121 PALILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYV-VKDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAY 199 (596)
T ss_dssp CCEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEE-ETTEEEECCBCGGGTCCCEEEEEETTTCCEEEEEE
T ss_pred ceEEEEEeCCCCeEeeccccCceeccccccccccccccccCCcE-ECCeEEEeeccccccccCceEEEECCCCcEEEEee
Confidence 3478888889999999999999998875321 112211111 2334555543 4889999999999987653
|
| >d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Nidogen species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.59 E-value=0.016 Score=49.12 Aligned_cols=243 Identities=9% Similarity=0.025 Sum_probs=137.7
Q ss_pred CEEEEeeCCCcEEEEcCCCCe-----eEEEeecCCcceeEEEEeeCCCeEEEe-eCCCeEEEEEcCCCceeEeccccCCc
Q psy18231 177 SYCLTCGSDKKIKLWNPYRNL-----LLKTYGGHAHEVNDATAACDSSQIASG-ASDKSVILWEVTTGQPVRRWREHASK 250 (540)
Q Consensus 177 ~~lat~~~dg~i~iwd~~~~~-----~~~~~~~h~~~v~~l~~sp~~~~l~s~-s~dg~i~iwd~~~~~~~~~~~~h~~~ 250 (540)
.+|+-+. .+.|+-.+++... ....+..+...+..++|.+..+.|.-+ ..++.|...++..+.....+......
T Consensus 2 ~fLl~s~-~~~I~~~~ld~~~~~~~~~~~~~~~~~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~v~~~~~~~ 80 (263)
T d1npea_ 2 THLLFAQ-TGKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGS 80 (263)
T ss_dssp EEEEEEE-EEEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCC
T ss_pred CEEEEeC-CCeEEEEECCCccccccccccccccCCCcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCcEEEEEecccc
Confidence 3444433 3466666654322 122333445568889999877766655 45678988888766554444444457
Q ss_pred eeEEEECCCCCEEE-EecCCCcEEEEEecCCCCCCcchhhhhHhhhhcCCceeEEEEeecccccccccCceeeEEEeeee
Q psy18231 251 VTCVKFNEDSSVVI-SGSQDNTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRC 329 (540)
Q Consensus 251 v~~~~~~~~~~~l~-s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (540)
+..+++..-+..|+ +-...+.|.+.++.......+
T Consensus 81 p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~~~~l-------------------------------------------- 116 (263)
T d1npea_ 81 PEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVL-------------------------------------------- 116 (263)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEE--------------------------------------------
T ss_pred ccEEEEeccCCeEEEeccCCCEEEEEecCCceEEEE--------------------------------------------
Confidence 88999987555554 545567888888765431000
Q ss_pred cccccceeeeeeccceeEEEeecccceecccccccccccchhhhhhcccccEEEEEecC--CeeEeeeC---CCeEEEEe
Q psy18231 330 KYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEARDSITSVHVSD--HEILTASL---DCRIRRYD 404 (540)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~--~~l~~~~~---dg~i~iwd 404 (540)
.......+..++++| .++..... ...|..-+
T Consensus 117 --------------------------------------------~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~ 152 (263)
T d1npea_ 117 --------------------------------------------FDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSH 152 (263)
T ss_dssp --------------------------------------------ECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEE
T ss_pred --------------------------------------------ecccccCCcEEEEecccCcEEEeecCCCCcEEEEec
Confidence 001113456777776 44443322 22354445
Q ss_pred CCCCceEEeeeC--CceEEEEEecCCcEEEee-cCCCeEEEEeccccchhhhhccCcCCcceEEEEecCCCCeEEEe-eC
Q psy18231 405 IRTGNLVTDYVG--EPIVDACFTRDCQCILTC-STDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCG-SS 480 (540)
Q Consensus 405 ~~~~~~~~~~~~--~~i~~~~~sp~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~s~~~~~l~s~-s~ 480 (540)
++.......... .....+++.+.++.|... ...+.|...|+........+.+...+ ..+ ++. +.+|+.. ..
T Consensus 153 ~dG~~~~~i~~~~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~~g~~~~~v~~~~~~P-~~l--av~--~~~lYwtd~~ 227 (263)
T d1npea_ 153 MDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEGLQYP-FAV--TSY--GKNLYYTDWK 227 (263)
T ss_dssp TTSCCCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEECCCSE-EEE--EEE--TTEEEEEETT
T ss_pred CCCCCceeeeeecccccceEEEeecCcEEEEEeCCCCEEEEEECCCCCeEEEECCCCCc-EEE--EEE--CCEEEEEECC
Confidence 654333222222 456899999877766554 56788999998765443333332222 334 443 3455444 46
Q ss_pred CCcEEEEEecCCcceeEEEecccceeeeEEEEcC
Q psy18231 481 DGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHP 514 (540)
Q Consensus 481 dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~ 514 (540)
.+.|...|..+++.+..+.. ........++..+
T Consensus 228 ~~~I~~~~~~~g~~~~~~~~-~~~~~~~gi~v~~ 260 (263)
T d1npea_ 228 TNSVIAMDLAISKEMDTFHP-HKQTRLYGITIAL 260 (263)
T ss_dssp TTEEEEEETTTTEEEEEECC-SSCCCCCCEEEEC
T ss_pred CCEEEEEECCCCccceEECC-CCCCCcceEEEeC
Confidence 67888889888887766642 2233444555543
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Probab=97.58 E-value=0.0028 Score=57.71 Aligned_cols=93 Identities=15% Similarity=0.044 Sum_probs=60.6
Q ss_pred eeeeecccccceee------eeecCeEEEEeCCCCCEEEEeeCC-CcEEEEcCCCCeeEEEeec-CCcceeEEEEeeCCC
Q psy18231 148 SIRVYRPLTVNREL------FVLSGLMHTRFPVDGSYCLTCGSD-KKIKLWNPYRNLLLKTYGG-HAHEVNDATAACDSS 219 (540)
Q Consensus 148 ~i~~~~~~~~~~~~------~h~~~v~~v~~spdg~~lat~~~d-g~i~iwd~~~~~~~~~~~~-h~~~v~~l~~sp~~~ 219 (540)
.+.+|++.+..... .|.......++.+||++++.|+.+ ..+.+||..+..-...-.. ....-.+.+..+||+
T Consensus 53 ~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~i~v~Gg~~~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~~dG~ 132 (387)
T d1k3ia3 53 LTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGR 132 (387)
T ss_dssp EEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSC
T ss_pred EEEEEECCCCcEeecCCCCCCcccceeEEEEecCCcEEEeecCCCcceeEecCccCcccccccccccccccceeeecCCc
Confidence 35678877654321 122334466788999999988765 5899999887654332111 112234567777999
Q ss_pred eEEEeeCC------CeEEEEEcCCCce
Q psy18231 220 QIASGASD------KSVILWEVTTGQP 240 (540)
Q Consensus 220 ~l~s~s~d------g~i~iwd~~~~~~ 240 (540)
.++.++.+ ..+.+||..+.+-
T Consensus 133 v~v~GG~~~~~~~~~~v~~yd~~~~~W 159 (387)
T d1k3ia3 133 VFTIGGSWSGGVFEKNGEVYSPSSKTW 159 (387)
T ss_dssp EEEECCCCCSSSCCCCEEEEETTTTEE
T ss_pred eeeeccccccccccceeeeecCCCCce
Confidence 99988753 3689999887653
|
| >d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Nidogen species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.57 E-value=0.017 Score=48.97 Aligned_cols=207 Identities=5% Similarity=-0.103 Sum_probs=125.2
Q ss_pred eeecCeEEEEeCCCCCEEEEe-eCCCcEEEEcCCCCeeEEEeecCCcceeEEEEeeCCCeEE-EeeCCCeEEEEEcCCCc
Q psy18231 162 FVLSGLMHTRFPVDGSYCLTC-GSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIA-SGASDKSVILWEVTTGQ 239 (540)
Q Consensus 162 ~h~~~v~~v~~spdg~~lat~-~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~-s~s~dg~i~iwd~~~~~ 239 (540)
.+...+..++|.+..+.|.-. ..++.|+..++........+......+.++++..-+..|. +-...+.|.+.++....
T Consensus 33 ~~~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~v~~~~~~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~ 112 (263)
T d1npea_ 33 IPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQ 112 (263)
T ss_dssp EEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS
T ss_pred cCCCcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCcEEEEEeccccccEEEEeccCCeEEEeccCCCEEEEEecCCce
Confidence 345568889999887777755 4567888888766555444444345788999987555555 55567899999986554
Q ss_pred eeEeccccCCceeEEEECCCCCEEEEecC-CCcEEEEEecCCCCCCcchhhhhHhhhhcCCceeEEEEeecccccccccC
Q psy18231 240 PVRRWREHASKVTCVKFNEDSSVVISGSQ-DNTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHLSNG 318 (540)
Q Consensus 240 ~~~~~~~h~~~v~~~~~~~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (540)
....+......+..+++.|...+++-... .+.-+|+...........
T Consensus 113 ~~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~~~-------------------------------- 160 (263)
T d1npea_ 113 RRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRI-------------------------------- 160 (263)
T ss_dssp CEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEE--------------------------------
T ss_pred EEEEecccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCCcee--------------------------------
Confidence 43333333467889999986666554322 223344433221100000
Q ss_pred ceeeEEEeeeecccccceeeeeeccceeEEEeecccceecccccccccccchhhhhhcccccEEEEEecC--Cee-Eeee
Q psy18231 319 LLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEARDSITSVHVSD--HEI-LTAS 395 (540)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~--~~l-~~~~ 395 (540)
.....-....++++++ +.| .+-.
T Consensus 161 ------------------------------------------------------i~~~~~~~P~glaiD~~~~~lYw~d~ 186 (263)
T d1npea_ 161 ------------------------------------------------------LAQDNLGLPNGLTFDAFSSQLCWVDA 186 (263)
T ss_dssp ------------------------------------------------------EECTTCSCEEEEEEETTTTEEEEEET
T ss_pred ------------------------------------------------------eeeecccccceEEEeecCcEEEEEeC
Confidence 0001112345777765 445 4445
Q ss_pred CCCeEEEEeCCCCceEEeeeC-CceEEEEEecCCcEEEeecCCCeEEEEeccccchhhhhc
Q psy18231 396 LDCRIRRYDIRTGNLVTDYVG-EPIVDACFTRDCQCILTCSTDECLRLFDKATGELLEEYK 455 (540)
Q Consensus 396 ~dg~i~iwd~~~~~~~~~~~~-~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~ 455 (540)
..+.|...|++.......+.+ .....+++. ++.+..+-...+.|...|..+++.+..+.
T Consensus 187 ~~~~I~~~~~~g~~~~~v~~~~~~P~~lav~-~~~lYwtd~~~~~I~~~~~~~g~~~~~~~ 246 (263)
T d1npea_ 187 GTHRAECLNPAQPGRRKVLEGLQYPFAVTSY-GKNLYYTDWKTNSVIAMDLAISKEMDTFH 246 (263)
T ss_dssp TTTEEEEEETTEEEEEEEEECCCSEEEEEEE-TTEEEEEETTTTEEEEEETTTTEEEEEEC
T ss_pred CCCEEEEEECCCCCeEEEECCCCCcEEEEEE-CCEEEEEECCCCEEEEEECCCCccceEEC
Confidence 678899899876554444444 334577775 44555555567889999998887765553
|
| >d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Ethanol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=97.54 E-value=0.026 Score=54.22 Aligned_cols=80 Identities=16% Similarity=0.189 Sum_probs=53.1
Q ss_pred CeEEEEeccccchhhhhccCcCCcceEEEEecCCCCeEEEeeCCCcEEEEEecCCcceeEEEecccceeeeEEEEcCCCc
Q psy18231 438 ECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRK 517 (540)
Q Consensus 438 g~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~ 517 (540)
|.|.-+|+.+++.+-+...+...... ..+..+.++++|+.||.++.+|.++|+.+-+++.+. ...-.-+.|..+|+
T Consensus 466 G~l~AiD~~TG~i~W~~~~~~p~~~g---~lstagglVF~Gt~dg~l~A~Da~TGe~LW~~~~~~-~~~~~P~ty~~~G~ 541 (582)
T d1flga_ 466 GSLRAMDPVSGKVVWEHKEHLPLWAG---VLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGS-GIVSPPITWEQDGE 541 (582)
T ss_dssp EEEEEECTTTCCEEEEEEESSCCCSC---CEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSS-CCCSCCEEEEETTE
T ss_pred CeEEEEcCCCCcEEeecCCCCCCccc---eeEEcCCeEEEeCCCCeEEEEECCCCcEeEEEECCC-CccccCEEEEECCE
Confidence 56777888888877666544322211 133456788889999999999999999999887422 11111255667885
Q ss_pred -EEEe
Q psy18231 518 -HIMS 521 (540)
Q Consensus 518 -~l~s 521 (540)
|++.
T Consensus 542 qYv~i 546 (582)
T d1flga_ 542 QYLGV 546 (582)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 5543
|
| >d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Prolyl oligopeptidase, N-terminal domain domain: Prolyl oligopeptidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=97.32 E-value=0.06 Score=49.38 Aligned_cols=98 Identities=14% Similarity=0.035 Sum_probs=63.3
Q ss_pred eEEEEeCCCCCEEEEe-e----CCCcEEEEcCCCCeeEEEeecCCcceeEEEEeeCCCeEEEeeCC--------------
Q psy18231 167 LMHTRFPVDGSYCLTC-G----SDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASD-------------- 227 (540)
Q Consensus 167 v~~v~~spdg~~lat~-~----~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~d-------------- 227 (540)
+...++|||++++|.+ + ....+++.|+.+++.+...- .......++|++|++.|+-...+
T Consensus 127 ~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i-~~~~~~~~~W~~D~~~~~Y~~~~~~~~~~~~~~~~~~ 205 (430)
T d1qfma1 127 LRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVL-ERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTN 205 (430)
T ss_dssp EEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEE-EEECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCC
T ss_pred ecceEecCCCCEEEEEeccccCchheeEEeccCcceeccccc-ccccccceEEcCCCCEEEEEEeccccCcccccccccC
Confidence 4456789999999843 2 23479999999998765321 11223568999999987754322
Q ss_pred --CeEEEEEcCCCce--eEecccc--CCceeEEEECCCCCEEEE
Q psy18231 228 --KSVILWEVTTGQP--VRRWREH--ASKVTCVKFNEDSSVVIS 265 (540)
Q Consensus 228 --g~i~iwd~~~~~~--~~~~~~h--~~~v~~~~~~~~~~~l~s 265 (540)
..|..|.+.+... ...+... ...+..+..++++++++.
T Consensus 206 ~~~~v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~s~d~~~l~i 249 (430)
T d1qfma1 206 LHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLL 249 (430)
T ss_dssp CCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEE
T ss_pred CcceEEEEECCCCccccccccccccCCceEEeeeccCCcceeeE
Confidence 2577787776532 2223332 334667778889888764
|
| >d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Paracoccus denitrificans [TaxId: 266]
Probab=97.12 E-value=0.082 Score=47.05 Aligned_cols=133 Identities=8% Similarity=0.026 Sum_probs=81.0
Q ss_pred eEEEEeCCCCceEEeee-CCceEEEEEecCCcEEEeecCCC---------------eEEEEeccccc-------------
Q psy18231 399 RIRRYDIRTGNLVTDYV-GEPIVDACFTRDCQCILTCSTDE---------------CLRLFDKATGE------------- 449 (540)
Q Consensus 399 ~i~iwd~~~~~~~~~~~-~~~i~~~~~sp~~~~l~~~~~dg---------------~i~i~d~~~~~------------- 449 (540)
.+..+|.++.+....+. +.....+.++|+|+++++.+.+. .+.++|....+
T Consensus 174 ~~t~ID~~tm~V~~QV~V~g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~Gk~~eing 253 (459)
T d1fwxa2 174 VFTAVDADKWEVAWQVLVSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNG 253 (459)
T ss_dssp EEEEEETTTTEEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETT
T ss_pred EEEEEecCCceEEEEeeeCCChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcCCcEEeCC
Confidence 36678999888776665 45677899999999998876431 24444432111
Q ss_pred -------------hhhhhccCcCCcceEEEEecCCCCeEEE-eeCCCcEEEEEecCCc--------ceeEEE-eccccee
Q psy18231 450 -------------LLEEYKGHKSGDFRIECCLDSKDSQIFC-GSSDGKIYKWQLVDSS--------QISTLI-HSVGKAV 506 (540)
Q Consensus 450 -------------~~~~~~~~~~~v~~~~~~~s~~~~~l~s-~s~dg~i~iwd~~~~~--------~~~~~~-~~~~~~~ 506 (540)
.++.+....+ ...+ ..+|||+++++ +..+.++.|+|++.-. +...+. .....-.
T Consensus 254 V~VVD~~~~~~~~v~~yIPVpKs-PHGV--~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~~~~e~elglg 330 (459)
T d1fwxa2 254 VKVVDGRKEASSLFTRYIPIANN-PHGC--NMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLG 330 (459)
T ss_dssp EEEEECSGG--CSSEEEEEEESS-CCCE--EECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGGEEECCBCCSC
T ss_pred ceeecccccCCcceeEEEecCCC-CCce--EECCCCCEEEEeCCcCCcEEEEEehhhhhhhcccCCccccEEeecccCcC
Confidence 0011111111 1233 68999999655 5578999999986311 111111 0122334
Q ss_pred eeEEEEcCCCcEEEeec-CCeeEEEEccc
Q psy18231 507 VNSLCSHPTRKHIMSAC-GNNVKLWTAEE 534 (540)
Q Consensus 507 v~~l~~s~d~~~l~s~~-d~~i~iw~~~~ 534 (540)
...-+|+.+|.-..|-- |.+|.-|+++.
T Consensus 331 PLht~fd~~g~aytslfids~v~kw~~~~ 359 (459)
T d1fwxa2 331 PLHTAFDGRGNAYTSLFLDSQVVKWNIED 359 (459)
T ss_dssp EEEEEECTTSEEEEEETTTTEEEEEEHHH
T ss_pred ccccccCCCceEEEEeeccceEEEEecch
Confidence 56778999886555555 99999999864
|
| >d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Low density lipoprotein (LDL) receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.04 E-value=0.072 Score=45.01 Aligned_cols=104 Identities=12% Similarity=-0.001 Sum_probs=64.7
Q ss_pred eecCeEEEEeCCCCCEEEEee-CCCcEEEEcCCCC----eeEEEeecCCcceeEEEEeeCCCeEE-EeeCCCeEEEEEcC
Q psy18231 163 VLSGLMHTRFPVDGSYCLTCG-SDKKIKLWNPYRN----LLLKTYGGHAHEVNDATAACDSSQIA-SGASDKSVILWEVT 236 (540)
Q Consensus 163 h~~~v~~v~~spdg~~lat~~-~dg~i~iwd~~~~----~~~~~~~~h~~~v~~l~~sp~~~~l~-s~s~dg~i~iwd~~ 236 (540)
....+.++.|++..+.|.-.. ..+.|.--++... .....+......+..+++.+.+..|. +-...+.|.+.++.
T Consensus 28 ~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~p~glAvD~~~~~lY~~d~~~~~I~v~~~~ 107 (266)
T d1ijqa1 28 NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTK 107 (266)
T ss_dssp SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred CCCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcceEEEEeCCCCCcceEEEeeccceEEEEecCCCEEEeEecC
Confidence 345677899998887777553 4566766655422 11222233345677889887555554 44566789999987
Q ss_pred CCceeEeccccCCceeEEEECCCCCEEEEe
Q psy18231 237 TGQPVRRWREHASKVTCVKFNEDSSVVISG 266 (540)
Q Consensus 237 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~ 266 (540)
.......+.........++.+|...+|+-.
T Consensus 108 g~~~~~~~~~~~~~P~~l~vd~~~g~ly~~ 137 (266)
T d1ijqa1 108 GVKRKTLFRENGSKPRAIVVDPVHGFMYWT 137 (266)
T ss_dssp SSSEEEEEECTTCCEEEEEEETTTTEEEEE
T ss_pred CceEEEEEcCCCCCcceEEEEcccCeEEEe
Confidence 665555555556678899998855555443
|
| >d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Low density lipoprotein (LDL) receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.94 E-value=0.089 Score=44.43 Aligned_cols=231 Identities=10% Similarity=0.029 Sum_probs=127.4
Q ss_pred EEEEeeCCCcEEEEcCCCCeeEEEeecCCcceeEEEEeeCCCeEEEee-CCCeEEEEEcCCCc----eeEeccccCCcee
Q psy18231 178 YCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGA-SDKSVILWEVTTGQ----PVRRWREHASKVT 252 (540)
Q Consensus 178 ~lat~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s-~dg~i~iwd~~~~~----~~~~~~~h~~~v~ 252 (540)
+|+.+. ...|+-.++.+......+. ....+.++.|.+..+.|.-.. .++.|.--++.... ....+......+.
T Consensus 3 fLl~s~-~~~I~~~~l~~~~~~~~~~-~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~p~ 80 (266)
T d1ijqa1 3 YLFFTN-RHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPD 80 (266)
T ss_dssp EEEEEC-BSSEEEEETTSCCCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCC
T ss_pred EEEEEC-CCeEEEEECCCCcceeeeC-CCCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcceEEEEeCCCCCcc
Confidence 344333 3458888887665444444 455677899998777766554 45667766664321 1122223345577
Q ss_pred EEEECCCCCEEE-EecCCCcEEEEEecCCCCCCcchhhhhHhhhhcCCceeEEEEeecccccccccCceeeEEEeeeecc
Q psy18231 253 CVKFNEDSSVVI-SGSQDNTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKY 331 (540)
Q Consensus 253 ~~~~~~~~~~l~-s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (540)
.+++.+.+..|+ +-...+.|.+.++.......
T Consensus 81 glAvD~~~~~lY~~d~~~~~I~v~~~~g~~~~~----------------------------------------------- 113 (266)
T d1ijqa1 81 GLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKT----------------------------------------------- 113 (266)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTSSSEEE-----------------------------------------------
T ss_pred eEEEeeccceEEEEecCCCEEEeEecCCceEEE-----------------------------------------------
Confidence 888877554444 44556778888876543100
Q ss_pred cccceeeeeeccceeEEEeecccceecccccccccccchhhhhhcccccEEEEEecC--CeeEeee--CCCeEEEEeCCC
Q psy18231 332 LNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEARDSITSVHVSD--HEILTAS--LDCRIRRYDIRT 407 (540)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~--~~l~~~~--~dg~i~iwd~~~ 407 (540)
...........++++| .++.... ..+.|...++..
T Consensus 114 -----------------------------------------~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dG 152 (266)
T d1ijqa1 114 -----------------------------------------LFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNG 152 (266)
T ss_dssp -----------------------------------------EEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTS
T ss_pred -----------------------------------------EEcCCCCCcceEEEEcccCeEEEeccCCCcceeEeccCC
Confidence 0111123455677766 3444332 345677777764
Q ss_pred CceEEeeeC--CceEEEEEecCCcEEEee-cCCCeEEEEeccccchhhhhccCcCCcceEEEEecCCCCeEEEeeCCCcE
Q psy18231 408 GNLVTDYVG--EPIVDACFTRDCQCILTC-STDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKI 484 (540)
Q Consensus 408 ~~~~~~~~~--~~i~~~~~sp~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~s~~~~~l~s~s~dg~i 484 (540)
......... .....+++.+.++.|..+ ...+.|...|+...............-....+++. ++....+-..++.|
T Consensus 153 s~~~~l~~~~~~~p~gl~iD~~~~~lYw~d~~~~~I~~~~~dG~~~~~~~~~~~~~~~p~~lav~-~~~ly~td~~~~~I 231 (266)
T d1ijqa1 153 VDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAI 231 (266)
T ss_dssp CCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTEE
T ss_pred CceecccccccceeeEEEeeccccEEEEecCCcCEEEEEECCCCCEEEEEeCCCcccccEEEEEE-CCEEEEEECCCCeE
Confidence 433332222 457899999877666555 55788999888654332222222211112222444 23334444466788
Q ss_pred EEEEecCCcceeEEE
Q psy18231 485 YKWQLVDSSQISTLI 499 (540)
Q Consensus 485 ~iwd~~~~~~~~~~~ 499 (540)
+..+..+++....+.
T Consensus 232 ~~~~~~~g~~~~~~~ 246 (266)
T d1ijqa1 232 FSANRLTGSDVNLLA 246 (266)
T ss_dssp EEEETTTCCCCEEEE
T ss_pred EEEECCCCcceEEEE
Confidence 888877877776665
|
| >d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Pseudomonas putida, hk5 [TaxId: 303]
Probab=96.79 E-value=0.084 Score=50.19 Aligned_cols=136 Identities=13% Similarity=0.181 Sum_probs=82.8
Q ss_pred CeEEEEeCCCCceEEeeeC--C---------ceEEEEEecCC---cEEEeecCCCeEEEEeccccchhhhhccCc-----
Q psy18231 398 CRIRRYDIRTGNLVTDYVG--E---------PIVDACFTRDC---QCILTCSTDECLRLFDKATGELLEEYKGHK----- 458 (540)
Q Consensus 398 g~i~iwd~~~~~~~~~~~~--~---------~i~~~~~sp~~---~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~----- 458 (540)
..|.-.|+++++....++. + ...-+.+..++ ..++.+..+|.++++|..+++++...+.-.
T Consensus 270 ~sivAld~~tG~~~W~~Q~~~~D~wd~d~~~~~~l~~~~~~g~~~~~v~~~~k~G~~~~lDr~tG~~i~~~~~~~~~~~~ 349 (560)
T d1kv9a2 270 SSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAE 349 (560)
T ss_dssp TEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEE
T ss_pred eeeEEecCCccceeEEEeccccccccccccceeeeeeeecCCceeeeeeecCccceEEEEecCCCccccccccccccccc
Confidence 4577779999988765542 1 12222333344 367788899999999999988653221100
Q ss_pred -----------------------------CCcceEEEEecCCCCeEEEeeC-----------------------------
Q psy18231 459 -----------------------------SGDFRIECCLDSKDSQIFCGSS----------------------------- 480 (540)
Q Consensus 459 -----------------------------~~v~~~~~~~s~~~~~l~s~s~----------------------------- 480 (540)
+...--..+++|+..+++....
T Consensus 350 ~~d~~~~~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yvp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 429 (560)
T d1kv9a2 350 KVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADAT 429 (560)
T ss_dssp EECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCC
T ss_pred ccChhhccccccccccccccceeeeeccccccccccccccCCCCeeecccccccceeeccccccccccccccccCccccc
Confidence 0000001156666666554332
Q ss_pred -------CCcEEEEEecCCcceeEEEecccceeeeEEEEcCCCcEEEeec-CCeeEEEEccccc
Q psy18231 481 -------DGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC-GNNVKLWTAEEDY 536 (540)
Q Consensus 481 -------dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~-d~~i~iw~~~~~~ 536 (540)
.|.|.-||+.+++.+-+.....+ ..+-..+-.+.++++++ ||.++.+|.++|.
T Consensus 430 ~~p~~~~~G~l~A~D~~tGk~~W~~~~~~~---~~gg~l~TagglVF~G~~dg~l~A~Da~tGe 490 (560)
T d1kv9a2 430 DVPAAVVSGALLAWDPVKQKAAWKVPYPTH---WNGGTLSTAGNLVFQGTAAGQMHAYSADKGE 490 (560)
T ss_dssp CCCGGGCEEEEEEEETTTTEEEEEEEESSS---CCCCEEEETTTEEEEECTTSEEEEEETTTCC
T ss_pred CCCCcccccceEEEeCCCCeEeeeccCCCC---CCCceeEECCCEEEEECCCCcEEEEECCCCc
Confidence 25688899999998887764322 22212233467788888 9999999998763
|
| >d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Paracoccus denitrificans [TaxId: 266]
Probab=96.61 E-value=0.063 Score=47.80 Aligned_cols=140 Identities=11% Similarity=-0.011 Sum_probs=89.3
Q ss_pred CeeEee-eCCCeEEEEeCCCCceEEeee---CCceEEEEEec--CCcEEEeecCC------------------CeEEEEe
Q psy18231 389 HEILTA-SLDCRIRRYDIRTGNLVTDYV---GEPIVDACFTR--DCQCILTCSTD------------------ECLRLFD 444 (540)
Q Consensus 389 ~~l~~~-~~dg~i~iwd~~~~~~~~~~~---~~~i~~~~~sp--~~~~l~~~~~d------------------g~i~i~d 444 (540)
+++++. ..+..|.+.|+++.++.+.+. ...+..+...+ +-.+++..+.+ +.+.++|
T Consensus 100 rylFVNDkan~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~~~y~~~~t~ID 179 (459)
T d1fwxa2 100 RFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTAVD 179 (459)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGG-EEEEEEEEE
T ss_pred eEEEEEcCCCceEEEEECcceeeeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCccccchhhcceEEEEEe
Confidence 555555 468899999999998755443 35677766654 44566665542 2366788
Q ss_pred ccccchhhhhccCcCCcceEEEEecCCCCeEEEeeCC--------------------------------------CcEEE
Q psy18231 445 KATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSD--------------------------------------GKIYK 486 (540)
Q Consensus 445 ~~~~~~~~~~~~~~~~v~~~~~~~s~~~~~l~s~s~d--------------------------------------g~i~i 486 (540)
..+.+...+...... ...+ .++++|+++++.+.+ +.+.+
T Consensus 180 ~~tm~V~~QV~V~g~-ld~~--~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~Gk~~eingV~V 256 (459)
T d1fwxa2 180 ADKWEVAWQVLVSGN-LDNC--DADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKV 256 (459)
T ss_dssp TTTTEEEEEEEESSC-CCCE--EECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEE
T ss_pred cCCceEEEEeeeCCC-hhcc--ccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcCCcEEeCCcee
Confidence 887776555543322 2234 799999998887643 12233
Q ss_pred EEecC--C-cceeEEEecccceeeeEEEEcCCCcEEEeec--CCeeEEEEccc
Q psy18231 487 WQLVD--S-SQISTLIHSVGKAVVNSLCSHPTRKHIMSAC--GNNVKLWTAEE 534 (540)
Q Consensus 487 wd~~~--~-~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~--d~~i~iw~~~~ 534 (540)
-|..+ + ..+..+. -......+.++|||+++++++ +.++.+.|+++
T Consensus 257 VD~~~~~~~~v~~yIP---VpKsPHGV~vSPDGKyi~VaGKLs~tVSViD~~K 306 (459)
T d1fwxa2 257 VDGRKEASSLFTRYIP---IANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTR 306 (459)
T ss_dssp EECSGG--CSSEEEEE---EESSCCCEEECTTSSEEEEECTTSSBEEEEEGGG
T ss_pred ecccccCCcceeEEEe---cCCCCCceEECCCCCEEEEeCCcCCcEEEEEehh
Confidence 33322 1 1122222 123356789999999999988 99999999863
|
| >d1ep3a_ c.1.4.1 (A:) Dihydroorotate dehydrogenase {Lactococcus lactis, isozyme B [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Dihydroorotate dehydrogenase species: Lactococcus lactis, isozyme B [TaxId: 1358]
Probab=96.32 E-value=0.0019 Score=56.93 Aligned_cols=99 Identities=12% Similarity=0.180 Sum_probs=65.7
Q ss_pred cceecCCceEEeccCCCCCHHHHHHHHHcCCCEEEeeeeeccccc---------------c----cch---h----hccc
Q psy18231 10 RSTLLKNLKHCDSTLWTSKLNFRQLVRSHNVDLCFTPMIIADSFI---------------K----SSK---A----RNNE 63 (540)
Q Consensus 10 ~~~~~~~~~~~ap~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~---------------~----~~~---~----~~~~ 63 (540)
.++.+++++++|-..--++..+..++...|++.+.+..++...-. + .+. . ....
T Consensus 12 ~Gl~l~nPi~~aAG~~~~~~~~~~~~~~~g~G~v~~~ti~~~~~~gn~~pr~~~~~~~~~n~~g~~~~g~~~~~~~~~~~ 91 (311)
T d1ep3a_ 12 PGLDLKNPIIPASGCFGFGEEYAKYYDLNKLGSIMVKATTLHPRFGNPTPRVAETASGMLNAIGLQNPGLEVIMTEKLPW 91 (311)
T ss_dssp TTEEESSSEEECTTSSTTSTTGGGTSCGGGSSCEEEEEECSSCBCCCCSCCEEEETTEEEECCCCCBCCHHHHHHTHHHH
T ss_pred CCEEcCCCcEECCCCCCCCHHHHHhhhhcCccEEEEeeEcccccCCCCCCeEeeecccccccccccchhHHHHhhhhhhh
Confidence 368899999999433335666666666667776766665543211 0 000 0 0111
Q ss_pred cccCCCCCCEEEEEecCChhHHHHHHHHhcC--CCCeEeeccCCCce
Q psy18231 64 FSTSPEDTPLVVQFASNNHDDFVRATQYVAP--HCNGVDLNCGCPQR 108 (540)
Q Consensus 64 ~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~--~~~~id~~~gc~~~ 108 (540)
......+.|+++|+.+.+++++.++++.+.+ +++.|++|++||..
T Consensus 92 ~~~~~~~~pii~si~~~~~~~~~~~~~~~~~~~g~d~ielN~~cP~~ 138 (311)
T d1ep3a_ 92 LNENFPELPIIANVAGSEEADYVAVCAKIGDAANVKAIELNISCPNV 138 (311)
T ss_dssp HHHHCTTSCEEEEECCSSHHHHHHHHHHHTTSTTEEEEEEECCSEEG
T ss_pred hhcccCCCcccccccchhhhHHHHHHHHHhhcccccccccccCCCcc
Confidence 1123457899999999999999998887765 67899999999953
|
| >d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Comamonas testosteroni [TaxId: 285]
Probab=96.24 E-value=0.036 Score=53.07 Aligned_cols=79 Identities=15% Similarity=0.056 Sum_probs=54.4
Q ss_pred CeEEEEeCCCCceEEeeeC-CceEEEEEecCCcEEEeecCCCeEEEEeccccchhhhhccCcCCcceEEEEecCCCC-eE
Q psy18231 398 CRIRRYDIRTGNLVTDYVG-EPIVDACFTRDCQCILTCSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDS-QI 475 (540)
Q Consensus 398 g~i~iwd~~~~~~~~~~~~-~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~s~~~~-~l 475 (540)
|.+.-||+.+++.+-+... .+...-..+-.+.++++|+.||.++.+|.++|+.+-+++......... +.|..+|+ |+
T Consensus 457 G~l~AiD~~tGk~~W~~~~~~p~~gg~lstagglVF~G~~dg~l~A~Da~TGe~LW~~~~~~~~~~~P-~ty~~~GkQYv 535 (573)
T d1kb0a2 457 GRLLAWDPVAQKAAWSVEHVSPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAP-STYMVDGRQYV 535 (573)
T ss_dssp EEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCC-EEEEETTEEEE
T ss_pred ccEEEeCCCCCceEeeecCCCCCCCceEEEcCCEEEEECCCCeEEEEECCCCcEeEEEECCCCccccC-EEEEECCEEEE
Confidence 5788899999998877754 233333345577888899999999999999999998876543322111 14556776 44
Q ss_pred EE
Q psy18231 476 FC 477 (540)
Q Consensus 476 ~s 477 (540)
+.
T Consensus 536 ~v 537 (573)
T d1kb0a2 536 SV 537 (573)
T ss_dssp EE
T ss_pred EE
Confidence 43
|
| >d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: Serum paraoxonase/arylesterase 1, PON1 domain: Serum paraoxonase/arylesterase 1, PON1 species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=95.88 E-value=0.22 Score=43.63 Aligned_cols=56 Identities=11% Similarity=0.118 Sum_probs=34.4
Q ss_pred EecCCCCeEEE-eeCCCcEEEEEecCCcceeEEEecccceeeeEEEEcC-CCcEEEee
Q psy18231 467 CLDSKDSQIFC-GSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHP-TRKHIMSA 522 (540)
Q Consensus 467 ~~s~~~~~l~s-~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~-d~~~l~s~ 522 (540)
+++||+++|+. -+..+.|++|++.....+.......-....-.+.+.+ +|.+.+++
T Consensus 212 ~~s~d~~~lyVa~t~~~~i~~y~~~~~~~l~~~~~~~l~~~pDNi~~d~~~g~lwva~ 269 (340)
T d1v04a_ 212 NISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLSFDTLVDNISVDPVTGDLWVGC 269 (340)
T ss_dssp EECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSEEEEEEECTTTCCEEEEE
T ss_pred EECCCCCEEEEEeCCCCeEEEEEeCCCcccceEEEecCCCCCCccEEecCCCEEEEEE
Confidence 89999987654 4577889999987554333222112334566777765 45554443
|
| >d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Prolyl oligopeptidase, N-terminal domain domain: Prolyl oligopeptidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=95.87 E-value=0.61 Score=42.25 Aligned_cols=61 Identities=13% Similarity=0.190 Sum_probs=40.1
Q ss_pred CcceeEEEEeeCCCeEEEe-eC----CCeEEEEEcCCCceeEeccccCCceeEEEECCCCCEEEEec
Q psy18231 206 AHEVNDATAACDSSQIASG-AS----DKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGS 267 (540)
Q Consensus 206 ~~~v~~l~~sp~~~~l~s~-s~----dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~ 267 (540)
.-.+...++|||++++|-+ +. .-++++.|+.+++.+...-. ......+.|.+|++.|+...
T Consensus 124 ~~~~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i~-~~~~~~~~W~~D~~~~~Y~~ 189 (430)
T d1qfma1 124 TVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLE-RVKFSCMAWTHDGKGMFYNA 189 (430)
T ss_dssp CEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEE-EECSCCEEECTTSSEEEEEE
T ss_pred cceecceEecCCCCEEEEEeccccCchheeEEeccCcceecccccc-cccccceEEcCCCCEEEEEE
Confidence 3344556789999998743 22 24799999999987642211 12235688999988776543
|
| >d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: Serum paraoxonase/arylesterase 1, PON1 domain: Serum paraoxonase/arylesterase 1, PON1 species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=95.84 E-value=0.28 Score=42.91 Aligned_cols=31 Identities=6% Similarity=0.127 Sum_probs=20.5
Q ss_pred CceEEEEEecCCcEEEee-cCCCeEEEEeccc
Q psy18231 417 EPIVDACFTRDCQCILTC-STDECLRLFDKAT 447 (540)
Q Consensus 417 ~~i~~~~~sp~~~~l~~~-~~dg~i~i~d~~~ 447 (540)
...+.++++||+++|+++ +..+.|+.|++..
T Consensus 206 ~~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~~ 237 (340)
T d1v04a_ 206 DFANGINISPDGKYVYIAELLAHKIHVYEKHA 237 (340)
T ss_dssp SSEEEEEECTTSSEEEEEEGGGTEEEEEEECT
T ss_pred CccceeEECCCCCEEEEEeCCCCeEEEEEeCC
Confidence 456777888877665444 4466777777654
|
| >d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Ethanol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=95.72 E-value=0.89 Score=43.02 Aligned_cols=52 Identities=8% Similarity=0.021 Sum_probs=36.6
Q ss_pred CcEEEEEecCCcceeEEEecccceeeeEEEEcCCCcEEEeec-CCeeEEEEccccc
Q psy18231 482 GKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC-GNNVKLWTAEEDY 536 (540)
Q Consensus 482 g~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~-d~~i~iw~~~~~~ 536 (540)
|.|.-+|+.+++.+-+... + .++.+-..+..+.++++++ ||.++.+|.++|.
T Consensus 466 G~l~AiD~~TG~i~W~~~~--~-~p~~~g~lstagglVF~Gt~dg~l~A~Da~TGe 518 (582)
T d1flga_ 466 GSLRAMDPVSGKVVWEHKE--H-LPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGK 518 (582)
T ss_dssp EEEEEECTTTCCEEEEEEE--S-SCCCSCCEEETTTEEEEECTTSEEEEEETTTCC
T ss_pred CeEEEEcCCCCcEEeecCC--C-CCCccceeEEcCCeEEEeCCCCeEEEEECCCCc
Confidence 5688888888888877763 2 2222222334677888889 9999999998874
|
| >d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nucleoporin domain family: Nucleoporin domain domain: Nucleoporin NUP159 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.48 E-value=0.64 Score=40.93 Aligned_cols=59 Identities=5% Similarity=0.014 Sum_probs=44.4
Q ss_pred ccEEEEEecCCeeEeeeCCCeEEEEeCCCCceEEeee-------CCceEEEEEecCCcEEEeecCC
Q psy18231 379 DSITSVHVSDHEILTASLDCRIRRYDIRTGNLVTDYV-------GEPIVDACFTRDCQCILTCSTD 437 (540)
Q Consensus 379 ~~v~~l~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-------~~~i~~~~~sp~~~~l~~~~~d 437 (540)
..+.++.++|..++....++.+.++++..++...... ...+.+++|++.|+.++++..+
T Consensus 126 ~~~~~~~~~p~~~~l~~~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~v~ws~kgkq~v~~~g~ 191 (381)
T d1xipa_ 126 KPVFQLKNVNNTLVILNSVNDLSALDLRTKSTKQLAQNVTSFDVTNSQLAVLLKDRSFQSFAWRNG 191 (381)
T ss_dssp SCEEEEEECSSEEEEEETTSEEEEEETTTCCEEEEEESEEEEEECSSEEEEEETTSCEEEEEEETT
T ss_pred ccccceecCCceeEEEecCCCEEEEEeccCccccccCCcceEEecCCceEEEEeCCcEEEEEeCCC
Confidence 4567788888888888889999999998876433222 2568888999988888887433
|
| >d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Thermostable phytase (3-phytase) family: Thermostable phytase (3-phytase) domain: Thermostable phytase (3-phytase) species: Bacillus amyloliquefaciens [TaxId: 1390]
Probab=95.21 E-value=0.85 Score=39.60 Aligned_cols=141 Identities=9% Similarity=0.190 Sum_probs=87.1
Q ss_pred CeeEeeeCCCeEEEEeCCCCceEEeeeCCceEEEEEec----CC--cEEEeecC--C--CeEEEEeccc-cchhhhhcc-
Q psy18231 389 HEILTASLDCRIRRYDIRTGNLVTDYVGEPIVDACFTR----DC--QCILTCST--D--ECLRLFDKAT-GELLEEYKG- 456 (540)
Q Consensus 389 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~i~~~~~sp----~~--~~l~~~~~--d--g~i~i~d~~~-~~~~~~~~~- 456 (540)
++++.....+-|.+||++ |+.+..+..+.++.+..-. ++ .-+++++. + .+|.+|.+.. ...+..+..
T Consensus 41 SlI~gTdK~~Gl~vYdL~-G~~l~~~~~Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~id~~~~~l~~~~~~ 119 (353)
T d1h6la_ 41 SKLITTNKKSGLAVYSLE-GKMLHSYHTGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQSITDP 119 (353)
T ss_dssp CEEEEEETTSCCEEEETT-CCEEEECCSSCEEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEEEETTTTEEEECSCS
T ss_pred cEEEEEcCcCCEEEEcCC-CcEEEecccCCcCccccccccccCCcceEEEEEeCCcCcceeEEEEEecCccccccccccc
Confidence 566666677779999996 8888888777777665442 22 23444442 2 3677887642 212222211
Q ss_pred ------CcCCcceEEEEecCC-CC-eEEEeeCCCcEEEEEecC---C----cceeEEEecccceeeeEEEEcCCCcEEEe
Q psy18231 457 ------HKSGDFRIECCLDSK-DS-QIFCGSSDGKIYKWQLVD---S----SQISTLIHSVGKAVVNSLCSHPTRKHIMS 521 (540)
Q Consensus 457 ------~~~~v~~~~~~~s~~-~~-~l~s~s~dg~i~iwd~~~---~----~~~~~~~~~~~~~~v~~l~~s~d~~~l~s 521 (540)
....++.+++..++. |. +++....+|.+..|.+.. + +.++.+. -...+..|++.+....|..
T Consensus 120 ~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~---~~~q~EGCVvDde~~~Lyi 196 (353)
T d1h6la_ 120 NRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFK---MNSQTEGMAADDEYGSLYI 196 (353)
T ss_dssp SSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEE---CSSCEEEEEEETTTTEEEE
T ss_pred ccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccC---CCCccceEEEeCCCCcEEE
Confidence 112467774434665 44 466777899999998743 2 2344454 3456889999999889999
Q ss_pred ec-CCeeEEEEcc
Q psy18231 522 AC-GNNVKLWTAE 533 (540)
Q Consensus 522 ~~-d~~i~iw~~~ 533 (540)
+- +..|..++.+
T Consensus 197 sEE~~Giw~~~a~ 209 (353)
T d1h6la_ 197 AEEDEAIWKFSAE 209 (353)
T ss_dssp EETTTEEEEEESS
T ss_pred ecCccceEEEEec
Confidence 88 6555444443
|
| >d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Kelch motif family: Kelch motif domain: Kelch-like ECH-associated protein 1, KEAP1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.88 E-value=0.64 Score=39.11 Aligned_cols=93 Identities=9% Similarity=-0.052 Sum_probs=45.1
Q ss_pred CeEEEEeCCCCceEEeeeC---CceEEEEEecCCcEEEeecCC-----CeEEEEeccccchhhhhccCcCCcceEEEEec
Q psy18231 398 CRIRRYDIRTGNLVTDYVG---EPIVDACFTRDCQCILTCSTD-----ECLRLFDKATGELLEEYKGHKSGDFRIECCLD 469 (540)
Q Consensus 398 g~i~iwd~~~~~~~~~~~~---~~i~~~~~sp~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~s 469 (540)
..+..||..+.+....-.. ....++.. .++++++.|+.+ .....+|..+.+....-.......... ++ .
T Consensus 164 ~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~i~GG~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~-~~-~ 240 (288)
T d1zgka1 164 NSAECYYPERNEWRMITAMNTIRSGAGVCV-LHNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRRSALG-IT-V 240 (288)
T ss_dssp CCEEEEETTTTEEEECCCCSSCCBSCEEEE-ETTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCCSSCCBSCE-EE-E
T ss_pred ceEEEeeccccccccccccccccccccccc-eeeeEEEecCccccccccceeeeeecceeeecccCccCcccceE-EE-E
Confidence 3467777776543322111 11112222 345666666544 346677776554322111111111111 12 2
Q ss_pred CCCCeEEEeeCCC-----cEEEEEecCCc
Q psy18231 470 SKDSQIFCGSSDG-----KIYKWQLVDSS 493 (540)
Q Consensus 470 ~~~~~l~s~s~dg-----~i~iwd~~~~~ 493 (540)
.++++++.|+.++ .|.+||+.+.+
T Consensus 241 ~~~~l~v~GG~~~~~~~~~v~~yd~~~~~ 269 (288)
T d1zgka1 241 HQGRIYVLGGYDGHTFLDSVECYDPDTDT 269 (288)
T ss_dssp ETTEEEEECCBCSSCBCCEEEEEETTTTE
T ss_pred ECCEEEEEecCCCCeecceEEEEECCCCE
Confidence 3677888877554 37889987653
|
| >d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Clathrin heavy-chain terminal domain family: Clathrin heavy-chain terminal domain domain: Clathrin heavy-chain terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=94.86 E-value=0.9 Score=38.02 Aligned_cols=251 Identities=15% Similarity=0.152 Sum_probs=138.8
Q ss_pred CCcEEEEcCCCCeeEEEeecCCcceeEEEEeeCCCeEEEeeCCCeEEEEEcCCCceeEeccccCCceeEEEECCCCCEEE
Q psy18231 185 DKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVI 264 (540)
Q Consensus 185 dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~ 264 (540)
..+|.|.|+.+.....+.. -...+.-.+|..+.||.-+ ..+++++|+++.+.+..+.- ...|.--.|-.+ +.|+
T Consensus 44 ~~~VvIidl~n~~~~~Rrp---i~AdsAIMhP~~~IiALra-g~~LQiFnletK~klks~~~-~e~VvfWkWis~-~~L~ 117 (327)
T d1utca2 44 QAQVVIIDMNDPSNPIRRP---ISADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTM-TDDVTFWKWISL-NTVA 117 (327)
T ss_dssp EEEEEEEETTSTTSCEEEE---CCCSEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEEEC-SSCCCEEEESSS-SEEE
T ss_pred CceEEEEECCCCCcceecc---cchhhhhcCCCCcEEEEec-CCeEEEEehhHhhhhceEEc-CCCcEEEEecCC-CEEE
Confidence 3578888987654332221 1223455678888887766 46899999999988887654 446666777654 4565
Q ss_pred EecCCCcEEEEEecCCCCCCcchhhhhHhhhhcCCceeEEEEeecccccccccCceeeEEEeeeecccccceeeeeeccc
Q psy18231 265 SGSQDNTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQ 344 (540)
Q Consensus 265 s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (540)
..+ +..|.-|+++... .|.........+
T Consensus 118 lVT-~taVYHW~~~g~s-~P~k~fdR~~~L-------------------------------------------------- 145 (327)
T d1utca2 118 LVT-DNAVYHWSMEGES-QPVKMFDRHSSL-------------------------------------------------- 145 (327)
T ss_dssp EEC-SSEEEEEESSSSC-CCEEEEECCGGG--------------------------------------------------
T ss_pred EEc-CCceEEEcccCCC-Cchhhhhhcccc--------------------------------------------------
Confidence 555 4579999996533 232211111000
Q ss_pred eeEEEeecccceecccccccccccchhhhhhcccccEEEEEecC--CeeEeee-------CCCeEEEEeCCCCceEEeee
Q psy18231 345 HLMVLLDFLGSTQIGDVTPISIHNSCFQALKEARDSITSVHVSD--HEILTAS-------LDCRIRRYDIRTGNLVTDYV 415 (540)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~--~~l~~~~-------~dg~i~iwd~~~~~~~~~~~ 415 (540)
....|.....++ ++++..+ -.|.+.+|..+.+ ..+.++
T Consensus 146 --------------------------------~~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~er~-~sQ~ie 192 (327)
T d1utca2 146 --------------------------------AGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIE 192 (327)
T ss_dssp --------------------------------TTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTT-EEEEEC
T ss_pred --------------------------------cCceEEEEEECCCCCEEEEEeEecCCCceeEEEEEEEeccC-cCcccc
Confidence 011222222222 2222111 1267889988743 444555
Q ss_pred CCceEEEEEecCC-----cEEEe---ecCCCeEEEEeccccch-hhhh---------ccCcCCcceEEEEecCCCCeEEE
Q psy18231 416 GEPIVDACFTRDC-----QCILT---CSTDECLRLFDKATGEL-LEEY---------KGHKSGDFRIECCLDSKDSQIFC 477 (540)
Q Consensus 416 ~~~i~~~~~sp~~-----~~l~~---~~~dg~i~i~d~~~~~~-~~~~---------~~~~~~v~~~~~~~s~~~~~l~s 477 (540)
+|...-..+--+| ++++. +...++++|.++..... -..+ ......-.-+.+..|+.-..++.
T Consensus 193 Ghaa~F~~~~~~g~~~~~~lf~fa~r~~~~~kLhIiEig~~~~g~~~f~kk~vdi~fppea~~DFPvamqvs~kygiiyv 272 (327)
T d1utca2 193 GHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFL 272 (327)
T ss_dssp CSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSCCCTTCCCCCCEEEECCCCTTCTTCCEEEEEEETTTTEEEE
T ss_pred ceeeeeEEEEcCCCCCCceEEEEEECCCCCcEEEEEEcCCCccCCCCCcceeEEEECCccccCCcEEEEEeeccCCEEEE
Confidence 5433222222111 12222 22346888888765321 1111 11111122344467777778999
Q ss_pred eeCCCcEEEEEecCCcceeEEEecccceeeeEEEEcCCCcEEEeec-CCeeE
Q psy18231 478 GSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC-GNNVK 528 (540)
Q Consensus 478 ~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~s~~-d~~i~ 528 (540)
-+.-|.|++||++++.++..-+ -..+.|...+-..+..=+++.. +|.|.
T Consensus 273 iTK~G~i~lyDleTgt~i~~nR--Is~~~iF~~a~~~~~~Gi~~VNr~GqVl 322 (327)
T d1utca2 273 ITKYGYIHLYDLETGTCIYMNR--ISGETIFVTAPHEATAGIIGVNRKGQVL 322 (327)
T ss_dssp EETTSEEEEEETTTCCEEEEEE--CCSSCEEEEEEETTTTEEEEEETTSEEE
T ss_pred EecCcEEEEEEcccccEEEEee--cCCCceEEeccCCCCceEEEECCCCeEE
Confidence 9999999999999999988877 4555666444444433333433 66654
|
| >d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Kelch motif family: Kelch motif domain: Kelch-like ECH-associated protein 1, KEAP1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.38 E-value=0.76 Score=38.62 Aligned_cols=105 Identities=6% Similarity=-0.018 Sum_probs=47.8
Q ss_pred CCcEEEeecCC-----CeEEEEeccccchhhhhccCcCCcceEEEEecCCCCeEEEeeCC-----CcEEEEEecCCccee
Q psy18231 427 DCQCILTCSTD-----ECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSD-----GKIYKWQLVDSSQIS 496 (540)
Q Consensus 427 ~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~s~~~~~l~s~s~d-----g~i~iwd~~~~~~~~ 496 (540)
++.+++.|+.+ ..+..||..+.+.... ........... +...++..++.|+.+ .....+|..+.+...
T Consensus 148 ~~~~~~~GG~~~~~~~~~~~~~d~~~~~~~~~-~~~~~~~~~~~-~~~~~~~i~i~GG~~~~~~~~~~~~~~~~~~~~~~ 225 (288)
T d1zgka1 148 NRLLYAVGGFDGTNRLNSAECYYPERNEWRMI-TAMNTIRSGAG-VCVLHNCIYAAGGYDGQDQLNSVERYDVETETWTF 225 (288)
T ss_dssp TTEEEEECCBCSSCBCCCEEEEETTTTEEEEC-CCCSSCCBSCE-EEEETTEEEEECCBCSSSBCCCEEEEETTTTEEEE
T ss_pred eecceEecCcccccccceEEEeeccccccccc-ccccccccccc-ccceeeeEEEecCccccccccceeeeeecceeeec
Confidence 45556555543 3477788765532211 11111111111 122345566666544 345667765543322
Q ss_pred EEEecccceeeeEEEEcCCCcEEEeec-CC-----eeEEEEcccc
Q psy18231 497 TLIHSVGKAVVNSLCSHPTRKHIMSAC-GN-----NVKLWTAEED 535 (540)
Q Consensus 497 ~~~~~~~~~~v~~l~~s~d~~~l~s~~-d~-----~i~iw~~~~~ 535 (540)
.-.. .....-.+++. .++++++.|+ ++ .|.+||++++
T Consensus 226 ~~~~-p~~r~~~~~~~-~~~~l~v~GG~~~~~~~~~v~~yd~~~~ 268 (288)
T d1zgka1 226 VAPM-KHRRSALGITV-HQGRIYVLGGYDGHTFLDSVECYDPDTD 268 (288)
T ss_dssp CCCC-SSCCBSCEEEE-ETTEEEEECCBCSSCBCCEEEEEETTTT
T ss_pred ccCc-cCcccceEEEE-ECCEEEEEecCCCCeecceEEEEECCCC
Confidence 1111 11111112222 3678888776 44 4778888753
|
| >d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Thermostable phytase (3-phytase) family: Thermostable phytase (3-phytase) domain: Thermostable phytase (3-phytase) species: Bacillus amyloliquefaciens [TaxId: 1390]
Probab=94.33 E-value=1.4 Score=38.10 Aligned_cols=106 Identities=8% Similarity=0.245 Sum_probs=63.7
Q ss_pred CCCCCEEEEeeCCCcEEEEcCCCCeeEEEeecCCcceeEEEEee----CCC--eEEEeeC--C--CeEEEEEcCC-Ccee
Q psy18231 173 PVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAAC----DSS--QIASGAS--D--KSVILWEVTT-GQPV 241 (540)
Q Consensus 173 spdg~~lat~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp----~~~--~l~s~s~--d--g~i~iwd~~~-~~~~ 241 (540)
.|+..+++....++-|.+||+ .|+.+..+. .+.+..+..-. +++ -++.++. + .+|.+|.+.. ...+
T Consensus 37 ~p~~SlI~gTdK~~Gl~vYdL-~G~~l~~~~--~Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~id~~~~~l 113 (353)
T d1h6la_ 37 NPQNSKLITTNKKSGLAVYSL-EGKMLHSYH--TGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTL 113 (353)
T ss_dssp CGGGCEEEEEETTSCCEEEET-TCCEEEECC--SSCEEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEEEETTTTEE
T ss_pred CcCccEEEEEcCcCCEEEEcC-CCcEEEecc--cCCcCccccccccccCCcceEEEEEeCCcCcceeEEEEEecCccccc
Confidence 345567777777777999998 588887765 34555554432 222 2444442 2 3688888753 3333
Q ss_pred Eecccc-------CCceeEEEE--CCC-CC-EEEEecCCCcEEEEEecCCC
Q psy18231 242 RRWREH-------ASKVTCVKF--NED-SS-VVISGSQDNTVMMWDVKSRS 281 (540)
Q Consensus 242 ~~~~~h-------~~~v~~~~~--~~~-~~-~l~s~~~dg~i~iwd~~~~~ 281 (540)
..+... ...+..+++ ++. +. +++....+|.+..|.+....
T Consensus 114 ~~~~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~ 164 (353)
T d1h6la_ 114 QSITDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADK 164 (353)
T ss_dssp EECSCSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECT
T ss_pred ccccccccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCC
Confidence 333221 224667776 664 44 56677788999999886543
|
| >d1gtea2 c.1.4.1 (A:533-844) Dihydropyrimidine dehydrogenase, domain 4 {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Dihydropyrimidine dehydrogenase, domain 4 species: Pig (Sus scrofa) [TaxId: 9823]
Probab=93.34 E-value=0.1 Score=45.29 Aligned_cols=99 Identities=15% Similarity=0.156 Sum_probs=65.8
Q ss_pred ceecCCceEEeccCCCCCHHHHHHHHHcCCCEEEeeeeecccccccch-hhcccc-------------------------
Q psy18231 11 STLLKNLKHCDSTLWTSKLNFRQLVRSHNVDLCFTPMIIADSFIKSSK-ARNNEF------------------------- 64 (540)
Q Consensus 11 ~~~~~~~~~~ap~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~------------------------- 64 (540)
++.+++++++|...--.+....+.+.+.|++.+.+..++..+...+++ .+....
T Consensus 7 Gl~l~nPi~~Asg~~~~~~~~~~~~~~~G~G~vv~ktvt~~~~~~~n~~pr~~~~~~~~~~~~~~~~~~~n~~g~~~~g~ 86 (312)
T d1gtea2 7 GLKFINPFGLASAAPTTSSSMIRRAFEAGWGFALTKTFSLDKDIVTNVSPRIVRGTTSGPMYGPGQSSFLNIELISEKTA 86 (312)
T ss_dssp TEEESSSEEECSSGGGSSHHHHHHHHHHTCSEEECCCBCCGGGCCCCCSSCEEECCTTCSCCSSCCSCEEECCCSCSSCH
T ss_pred CEEcCCCcEECCcCCCCCHHHHHHHHHcCCcEEEEeeecCCccccCCCCCcEEeccCCccccccccccccccccccccch
Confidence 577899999998656667777777788999999998886433211110 000000
Q ss_pred ----------cc-CCCCCCEEEEEecCChhHHHHHHHHhc-CCCCeEeeccCCCceE
Q psy18231 65 ----------ST-SPEDTPLVVQFASNNHDDFVRATQYVA-PHCNGVDLNCGCPQRW 109 (540)
Q Consensus 65 ----------~~-~~~~~~~~~q~~~~~~~~~~~~~~~~~-~~~~~id~~~gc~~~~ 109 (540)
.. -+...+++....+.+++++.+.++.+. .++|.+.+|.+||...
T Consensus 87 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~d~~~~a~~~~~~gad~lelN~scPn~~ 143 (312)
T d1gtea2 87 AYWCQSVTELKADFPDNIVIASIMCSYNKNDWMELSRKAEASGADALELNLSCPHGM 143 (312)
T ss_dssp HHHHHHHHHHHHHCTTSEEEEEECCCSCHHHHHHHHHHHHHTTCSEEEEECCCBCCC
T ss_pred hhhhhhhccccccccccccccccccccchhHHHHHHHHhccCCCCeEeeccCCCCcc
Confidence 00 123333555567788998888888654 4899999999999853
|
| >d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Acylamino-acid-releasing enzyme, N-terminal donain domain: Acylamino-acid-releasing enzyme, N-terminal donain species: Aeropyrum pernix [TaxId: 56636]
Probab=93.12 E-value=1.5 Score=34.32 Aligned_cols=97 Identities=10% Similarity=0.147 Sum_probs=55.2
Q ss_pred CCCEEEEeeCCCcEEEEcCCCCeeEEEeecCCcceeEEEEeeCCCeEEEeeCCCeEEEEEcCCCceeE------------
Q psy18231 175 DGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPVR------------ 242 (540)
Q Consensus 175 dg~~lat~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~------------ 242 (540)
+.+.|+++...|.+.++-+..++.++.- +.+|.... .|... -|..+.+-|+..|+.++
T Consensus 25 ~d~ll~~~~seG~vni~~l~g~~~vkLt---kePI~~~~-~Pk~~------ldfi~f~RDV~kGkE~Hai~~~Nlk~~GE 94 (313)
T d2hu7a1 25 GDKLLVVGFSEGSVNAYLYDGGETVKLN---REPINSVL-DPHYG------VGRVILVRDVSKGAEQHALFKVNTSRPGE 94 (313)
T ss_dssp TTEEEEEEEETTEEEEEEESSSSCEECC---SSCCSEEC-EECTT------BSEEEEEEECSTTSCCEEEEEEETTSTTC
T ss_pred CCcEEEEEeccceEEEEEEeCCEEEEEe---cccccCcC-CCccC------cceEEEEeehhcCcceeeEEEEccCCCCe
Confidence 3447778877899999888777655432 33443221 12111 12233334444443322
Q ss_pred --eccccC-CceeEEEECCCCCEEEEecCCCcEEEEEecCCCC
Q psy18231 243 --RWREHA-SKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSH 282 (540)
Q Consensus 243 --~~~~h~-~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~ 282 (540)
.+.... -.|.++++. +.+..++|+......+|-++.++.
T Consensus 95 E~~i~spk~vRI~S~~yd-dk~vvF~Gased~~~LYviegGkl 136 (313)
T d2hu7a1 95 EQRLEAVKPMRILSGVDT-GEAVVFTGATEDRVALYALDGGGL 136 (313)
T ss_dssp EEECTTSCSBEEEEEEEC-SSCEEEEEECSSCEEEEEEETTEE
T ss_pred eeEecCCceEEEEEeeec-CceEEEecccCCceEEEEEeCCce
Confidence 222222 456677765 456777888777889999988863
|
| >d1z41a1 c.1.4.1 (A:2-338) NADPH dehydrogenase NamA {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: NADPH dehydrogenase NamA species: Bacillus subtilis [TaxId: 1423]
Probab=92.87 E-value=0.14 Score=44.65 Aligned_cols=95 Identities=11% Similarity=0.154 Sum_probs=57.0
Q ss_pred cceecCCceEEeccCC---------CCCHHHHHHHHH--cCCCEEEeeeeecccccccchhhccccc-------------
Q psy18231 10 RSTLLKNLKHCDSTLW---------TSKLNFRQLVRS--HNVDLCFTPMIIADSFIKSSKARNNEFS------------- 65 (540)
Q Consensus 10 ~~~~~~~~~~~ap~~~---------~~~~~~r~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------- 65 (540)
+++.+++|+++|||.. +|+.-.+...++ -|++++.||.+....--+..+.......
T Consensus 11 g~~~lkNRiv~aPm~~~~~~~~~G~~t~~~~~~y~~rA~gG~GlIite~~~V~~~~~~~~~~~~~~~d~~i~~~k~l~~a 90 (337)
T d1z41a1 11 KDMTLKNRIVMSPMCMYSSHEKDGKLTPFHMAHYISRAIGQVGLIIVEASAVNPQGRITDQDLGIWSDEHIEGFAKLTEQ 90 (337)
T ss_dssp TTEEESSSEEECCCCCCCCTTSSSCCCHHHHHHHHHHHHTTCSEEEEEEEESSGGGCSSTTSCBCSSTHHHHHHHHHHHH
T ss_pred CCEEECCCEEeCccCCCccCCCCCCCCHHHHHHHHHHHcCCceEEEECcEEEccccccccCccccccHHHHHHHHHHHHH
Confidence 4688999999999963 233445544444 3889999997544322111111100000
Q ss_pred cCCCCCCEEEEEecCCh-----------------------------------hHHHHHHHHhc-CCCCeEeeccC
Q psy18231 66 TSPEDTPLVVQFASNNH-----------------------------------DDFVRATQYVA-PHCNGVDLNCG 104 (540)
Q Consensus 66 ~~~~~~~~~~q~~~~~~-----------------------------------~~~~~~~~~~~-~~~~~id~~~g 104 (540)
.+..+..+++|++-... +.+++||+... .+.|+|.+..+
T Consensus 91 vh~~G~~i~~QL~h~Gr~~~~~~~~~~ps~~~~~~~~~~p~~lt~~eI~~ii~~f~~AA~ra~~AGfDGVEiH~a 165 (337)
T d1z41a1 91 VKEQGSKIGIQLAHAGRKAELEGDIFAPSAIAFDEQSATPVEMSAEKVKETVQEFKQAAARAKEAGFDVIEIHAA 165 (337)
T ss_dssp HHHTTCEEEEEEECCGGGCCCSSCCEESSSCCSSTTSCCCEECCHHHHHHHHHHHHHHHHHHHHTTCSEEEEEEC
T ss_pred hhccccccchhhhcCCCcccccCCCCCCcccccccCCCCCcccCHHHHHHHHHHHHHHHHHHHHcCCCeEEeecc
Confidence 13556678888743321 56777777644 49999988864
|
| >d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Acylamino-acid-releasing enzyme, N-terminal donain domain: Acylamino-acid-releasing enzyme, N-terminal donain species: Aeropyrum pernix [TaxId: 56636]
Probab=92.30 E-value=2 Score=33.64 Aligned_cols=138 Identities=17% Similarity=0.188 Sum_probs=76.6
Q ss_pred ccEEEEEecC-CeeEeeeCCCeEEEEeCCCCceEE-----------eeeCCceEEEEE-ecCCcEEEeecC-CCeEEEEe
Q psy18231 379 DSITSVHVSD-HEILTASLDCRIRRYDIRTGNLVT-----------DYVGEPIVDACF-TRDCQCILTCST-DECLRLFD 444 (540)
Q Consensus 379 ~~v~~l~~~~-~~l~~~~~dg~i~iwd~~~~~~~~-----------~~~~~~i~~~~~-sp~~~~l~~~~~-dg~i~i~d 444 (540)
-.|.+++... +..++|+......+|-++.|++.. .+.+.-|..+.+ .++.+-+.++.- .|.++|++
T Consensus 104 vRI~S~~yddk~vvF~Gased~~~LYviegGklrkL~~vPpFsFVtDI~~d~I~G~g~~~g~~~sfF~adl~SG~lri~t 183 (313)
T d2hu7a1 104 MRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLPGFGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLRVFD 183 (313)
T ss_dssp BEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEESSCEEEEEEETTEEEEEEEEETTEEEEEEEETTTEEEEEEC
T ss_pred EEEEEeeecCceEEEecccCCceEEEEEeCCceeeeccCCCcceEEeccCCeEEEEeeecCCcceEEEEecccCCEEEec
Confidence 5788889888 888899888888999888776532 222344555543 344444555555 78888887
Q ss_pred ccccchhhhhccCcCCcceEEEEecCCCCeEEEee----CCCcEEEEEecCCcceeEEEecc------cceeeeEEEEcC
Q psy18231 445 KATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGS----SDGKIYKWQLVDSSQISTLIHSV------GKAVVNSLCSHP 514 (540)
Q Consensus 445 ~~~~~~~~~~~~~~~~v~~~~~~~s~~~~~l~s~s----~dg~i~iwd~~~~~~~~~~~~~~------~~~~v~~l~~s~ 514 (540)
...|..- .. .++++.+ ++++- +..-| -+|+++++... +..+. ..-.|+-+-+.|
T Consensus 184 pkeGS~~-----------~a--y~~~gnK-V~sdyEt~gEsywi-t~D~~s~~yer-ve~P~kd~~sy~p~~I~~~~Y~P 247 (313)
T d2hu7a1 184 SGEGSFS-----------SA--SISPGMK-VTAGLETAREARLV-TVDPRDGSVED-LELPSKDFSSYRPTAITWLGYLP 247 (313)
T ss_dssp CSSEEEE-----------EE--EECTTSC-EEEEEEESSCEEEE-EECTTTCCEEE-CCCSSCHHHHHCCSEEEEEEECT
T ss_pred CCCCccc-----------ce--eEccCce-eeeccCCCCceEEE-EEecccCceee-eecCcccceeecceEEEeeeeCC
Confidence 6655321 11 2233322 23221 22223 33555443221 11000 122355566778
Q ss_pred CCcEEEeec-CCeeEEEEc
Q psy18231 515 TRKHIMSAC-GNNVKLWTA 532 (540)
Q Consensus 515 d~~~l~s~~-d~~i~iw~~ 532 (540)
++++++.+- ||.=+++.-
T Consensus 248 dd~L~iiakrdG~s~lF~n 266 (313)
T d2hu7a1 248 DGRLAVVARREGRSAVFID 266 (313)
T ss_dssp TSCEEEEEEETTEEEEEET
T ss_pred CCcEEEEEecCCchheeec
Confidence 887777776 777776653
|
| >d1ps9a1 c.1.4.1 (A:1-330) 2,4-dienoyl-CoA reductase, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: 2,4-dienoyl-CoA reductase, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=90.28 E-value=0.5 Score=40.94 Aligned_cols=95 Identities=20% Similarity=0.096 Sum_probs=54.7
Q ss_pred cceecCCceEEeccCCCC----CHHHHH-----HHHHcCCCEEEeeeeecccccccchhhccc--------c-----ccC
Q psy18231 10 RSTLLKNLKHCDSTLWTS----KLNFRQ-----LVRSHNVDLCFTPMIIADSFIKSSKARNNE--------F-----STS 67 (540)
Q Consensus 10 ~~~~~~~~~~~ap~~~~~----~~~~r~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~-----~~~ 67 (540)
+++.+++|+++|||..-. +..-+. --++.|+++..||.+....--...+..... + ..+
T Consensus 12 g~~~lkNRiv~apm~~~~~~~~~~~~~~~~yy~~rA~gG~glIi~e~~~v~~~~~~~~~~~~~~~d~~i~~~k~l~~~vh 91 (330)
T d1ps9a1 12 GFTTLKNRVLMGSMHTGLEEYPDGAERLAAFYAERARHGVALIVSGGIAPDLTGVGMEGGAMLNDASQIPHHRTITEAVH 91 (330)
T ss_dssp SSCEESSSEEECCCCCSCTTSTTHHHHHHHHHHHHHHTTCSEEEEEEEBSSSTTCSBTTCCBCCSGGGHHHHHHHHHHHH
T ss_pred CCEEeCCCcEeCCCCCCcCCCCCCcHHHHHHHHHHHhCCeEEEEEeeeEEcCCccccCCCcccCCcccccccccceeeee
Confidence 468899999999995322 111111 112348999999998643221111111000 0 024
Q ss_pred CCCCCEEEEEecCC----------------------------------hhHHHHHHHHhc-CCCCeEeeccC
Q psy18231 68 PEDTPLVVQFASNN----------------------------------HDDFVRATQYVA-PHCNGVDLNCG 104 (540)
Q Consensus 68 ~~~~~~~~q~~~~~----------------------------------~~~~~~~~~~~~-~~~~~id~~~g 104 (540)
..+..+++|++-.. .+.+++||+... .+.|+|.++.+
T Consensus 92 ~~g~~i~~QL~H~Gr~~~~~~~~~ps~~~~~~~~~~p~~lt~~eI~~ii~~f~~aA~ra~~AGfDgVEIh~a 163 (330)
T d1ps9a1 92 QEGGKIALQILHTGRYSYQPHLVAPSALQAPINRFVPHELSHEEILQLIDNFARCAQLAREAGYDGVEVMGS 163 (330)
T ss_dssp HTTCCEEEEECCCGGGSBSTTCEESSSCCCTTCSSCCEECCHHHHHHHHHHHHHHHHHHHHTTCSEEEEEEC
T ss_pred cCCCeehhhhhhcCCccccCcccCCccccccccCCCChhcChhHHHHHHHHHHHHHHHHHHhCcCeeeeccc
Confidence 55677888885211 045667777644 49999988875
|
| >d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Soluble quinoprotein glucose dehydrogenase family: Soluble quinoprotein glucose dehydrogenase domain: Soluble quinoprotein glucose dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=88.86 E-value=3.1 Score=37.54 Aligned_cols=105 Identities=11% Similarity=0.041 Sum_probs=61.1
Q ss_pred ecCeEEEEeCCCCCEEEEeeCCCcEEEEcCCCCeeEE--Eee------cCCcceeEEEEeeC---CCeEEEe-e------
Q psy18231 164 LSGLMHTRFPVDGSYCLTCGSDKKIKLWNPYRNLLLK--TYG------GHAHEVNDATAACD---SSQIASG-A------ 225 (540)
Q Consensus 164 ~~~v~~v~~spdg~~lat~~~dg~i~iwd~~~~~~~~--~~~------~h~~~v~~l~~sp~---~~~l~s~-s------ 225 (540)
.+.-.+|+|.|||++|++--..|.|++++..++.... .+. .-.+....++|+|+ ..++... +
T Consensus 26 L~~P~~la~~pdg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pdf~~n~~iYvsyt~~~~~~ 105 (450)
T d1crua_ 26 LNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKS 105 (450)
T ss_dssp CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC
T ss_pred CCCceEEEEeCCCeEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCCCccCCEEEEEEecCCCCC
Confidence 3567799999999988776557999999977765432 221 11356788999984 3343332 1
Q ss_pred CC----Ce--EEEEEcCCCce--------eEecc-ccCCceeEEEECCCCCEEEEecC
Q psy18231 226 SD----KS--VILWEVTTGQP--------VRRWR-EHASKVTCVKFNEDSSVVISGSQ 268 (540)
Q Consensus 226 ~d----g~--i~iwd~~~~~~--------~~~~~-~h~~~v~~~~~~~~~~~l~s~~~ 268 (540)
.+ +. +..+....... +..+. ........|.|.||+.+.++.+.
T Consensus 106 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~i~~~~p~~~~H~gg~l~fgpDG~LYvs~Gd 163 (450)
T d1crua_ 106 TDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGD 163 (450)
T ss_dssp --CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECC
T ss_pred cccccccceEEEeeecccccccccceEEEeecccccccccccceeEcCCCCEEEEecC
Confidence 01 12 33333322211 11111 12234578999999987777664
|
| >d1gwja_ c.1.4.1 (A:) Morphinone reductase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Morphinone reductase species: Pseudomonas putida [TaxId: 303]
Probab=87.64 E-value=0.84 Score=40.23 Aligned_cols=42 Identities=12% Similarity=-0.060 Sum_probs=28.6
Q ss_pred cceecCCceEEeccC------CC-CCHHHHHHHHHcCCCEEEeeeeecc
Q psy18231 10 RSTLLKNLKHCDSTL------WT-SKLNFRQLVRSHNVDLCFTPMIIAD 51 (540)
Q Consensus 10 ~~~~~~~~~~~ap~~------~~-~~~~~r~~~~~~~~~~~~~~~~~~~ 51 (540)
++++++||+++|||. |. |+.-.+...++.++++..+|.....
T Consensus 15 g~~~lkNRiv~apm~~~~~~dg~~t~~~~~yy~~rA~gGlii~e~~~V~ 63 (374)
T d1gwja_ 15 GSLSLPNRVIMAPLTRSRTPDSVPGRLQQIYYGQRASAGLIISEATNIS 63 (374)
T ss_dssp TTEEESCSEEECCCCCCCCSSSCCCHHHHHHHHHTTTSSEEEEEEEESS
T ss_pred CCEEECCCeEEcccCCCCCCCCCCCHHHHHHHHHHhCCCEEEEEeEEEC
Confidence 578899999999996 22 3344443444447789999876543
|
| >d1icpa_ c.1.4.1 (A:) 12-oxophytodienoate reductase (OPR, OYE homolog) {Tomato (Lycopersicon esculentum), OPR1 [TaxId: 4081]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: 12-oxophytodienoate reductase (OPR, OYE homolog) species: Tomato (Lycopersicon esculentum), OPR1 [TaxId: 4081]
Probab=86.46 E-value=0.8 Score=40.20 Aligned_cols=40 Identities=8% Similarity=-0.106 Sum_probs=27.8
Q ss_pred cceecCCceEEeccCC-------CCCHHHHHHHHHc-CCCEEEeeeee
Q psy18231 10 RSTLLKNLKHCDSTLW-------TSKLNFRQLVRSH-NVDLCFTPMII 49 (540)
Q Consensus 10 ~~~~~~~~~~~ap~~~-------~~~~~~r~~~~~~-~~~~~~~~~~~ 49 (540)
+++.|+||+++|||.. .++.-++...++. |++++.||-+.
T Consensus 14 g~~~LkNRiv~apm~~~~a~~g~p~~~~~~~y~~rA~gGgliite~~~ 61 (364)
T d1icpa_ 14 GKFELCHRVVLAPLTRQRSYGYIPQPHAILHYSQRSTNGGLLIGEATV 61 (364)
T ss_dssp TTEEESCSEEECCCCCCCCGGGSCCHHHHHHHHHTCCTTCEEECCCEE
T ss_pred CCEEeCCccEecccCCCcCCCCCCCHHHHHHHHHHHhCceEEEEccEE
Confidence 5788999999999963 3444455454444 55899999544
|
| >d1vyra_ c.1.4.1 (A:) Pentaerythritol tetranirate reductase {Enterobacter cloacae [TaxId: 550]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Pentaerythritol tetranirate reductase species: Enterobacter cloacae [TaxId: 550]
Probab=86.08 E-value=0.92 Score=39.78 Aligned_cols=43 Identities=7% Similarity=-0.084 Sum_probs=28.8
Q ss_pred cceecCCceEEeccCCC---------CCHHHHHHHHHcCCCEEEeeeeeccc
Q psy18231 10 RSTLLKNLKHCDSTLWT---------SKLNFRQLVRSHNVDLCFTPMIIADS 52 (540)
Q Consensus 10 ~~~~~~~~~~~ap~~~~---------~~~~~r~~~~~~~~~~~~~~~~~~~~ 52 (540)
++++++||+++|||... ++.-.....++.|+++..||.+....
T Consensus 11 g~~~lkNRiv~apm~~~~a~~~g~~~~~~~~~yy~~ra~~Glii~e~~~V~~ 62 (363)
T d1vyra_ 11 GAVTAPNRVFMAPLTRLRSIEPGDIPTPLMGEYYRQRASAGLIISEATQISA 62 (363)
T ss_dssp TTEEESSSEEECCCCCCCCBTTTTBCCHHHHHHHHHTTTSSEEEEEEEESSS
T ss_pred CCEEECCCeEEccccCCcCCCCCCCCHHHHHHHHHHHcCcCEEEEeeeEECc
Confidence 57899999999999743 11222222344578999999866543
|
| >d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Soluble quinoprotein glucose dehydrogenase family: Soluble quinoprotein glucose dehydrogenase domain: Soluble quinoprotein glucose dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=84.73 E-value=6.1 Score=35.50 Aligned_cols=33 Identities=15% Similarity=0.060 Sum_probs=25.4
Q ss_pred CceEEEEEecCCcEEEeecCCCeEEEEeccccc
Q psy18231 417 EPIVDACFTRDCQCILTCSTDECLRLFDKATGE 449 (540)
Q Consensus 417 ~~i~~~~~sp~~~~l~~~~~dg~i~i~d~~~~~ 449 (540)
...++++|.|||++|++--..|.|++++..+++
T Consensus 27 ~~P~~la~~pdg~llVter~~G~i~~v~~~~g~ 59 (450)
T d1crua_ 27 NKPHALLWGPDNQIWLTERATGKILRVNPESGS 59 (450)
T ss_dssp SSEEEEEECTTSCEEEEETTTCEEEEECTTTCC
T ss_pred CCceEEEEeCCCeEEEEEecCCEEEEEECCCCc
Confidence 356788999999888776557888888876654
|
| >d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nucleoporin domain family: Nucleoporin domain domain: Nucleoporin NUP159 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=82.59 E-value=14 Score=31.95 Aligned_cols=108 Identities=11% Similarity=0.034 Sum_probs=67.3
Q ss_pred CeEEEEeCCCCCEEEEeeCCCcEEEEcCC-----------CCeeEEEeecCCcceeEEEEeeCCCeEEEeeCCCeEEEEE
Q psy18231 166 GLMHTRFPVDGSYCLTCGSDKKIKLWNPY-----------RNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWE 234 (540)
Q Consensus 166 ~v~~v~~spdg~~lat~~~dg~i~iwd~~-----------~~~~~~~~~~h~~~v~~l~~sp~~~~l~s~s~dg~i~iwd 234 (540)
..+-++.++...+++.|+.++ +.|-.++ ......... -..|..++|+.| .|+.. .++.+..++
T Consensus 38 ~~~LLAVsn~~GLl~aa~~~~-l~V~~t~~l~~~~~~~~~~~~~~~~~~--ip~v~~vafs~d--~l~v~-~~~~l~~~~ 111 (381)
T d1xipa_ 38 SLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEKE--IPDVIFVCFHGD--QVLVS-TRNALYSLD 111 (381)
T ss_dssp CCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEEE--CTTEEEEEEETT--EEEEE-ESSEEEEEE
T ss_pred ccceEEEeCCCCEEEEECCCE-EEEEEHHHHHHHhhccCCCCcceeccC--CCCeEEEEeeCC--EEEEE-eCCCEEEEE
Confidence 355677888777888887665 5565421 111111121 236888999744 45544 445688888
Q ss_pred cCCCceeEeccccCCceeEEEECCCCCEEEEecCCCcEEEEEecCCC
Q psy18231 235 VTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRS 281 (540)
Q Consensus 235 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~ 281 (540)
..+-........-..++..+.++|. .++....+|.+.++++...+
T Consensus 112 ~~~l~~~~~~~~~~~~~~~~~~~p~--~~~l~~~~~~~~~~~l~~~~ 156 (381)
T d1xipa_ 112 LEELSEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKS 156 (381)
T ss_dssp SSSTTCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCC
T ss_pred eeccccccccccccccccceecCCc--eeEEEecCCCEEEEEeccCc
Confidence 7765544444444567888888875 34555567889999887765
|
| >d1juba_ c.1.4.1 (A:) Dihydroorotate dehydrogenase {Lactococcus lactis, isozyme A [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Dihydroorotate dehydrogenase species: Lactococcus lactis, isozyme A [TaxId: 1358]
Probab=80.76 E-value=2.4 Score=36.11 Aligned_cols=98 Identities=10% Similarity=0.111 Sum_probs=63.7
Q ss_pred ceecCCceEEeccCCCCCHHHHHHHHHcCCCEEEeeeeecccccccchhh--------------------------cccc
Q psy18231 11 STLLKNLKHCDSTLWTSKLNFRQLVRSHNVDLCFTPMIIADSFIKSSKAR--------------------------NNEF 64 (540)
Q Consensus 11 ~~~~~~~~~~ap~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------~~~~ 64 (540)
++.+++|+++|-.-.-.+.-.-+.+...|++.+.+..++..+-.-+..-+ ....
T Consensus 8 Gl~l~nPi~~aag~~~~~~~~~~~~~~~G~G~vv~ktit~~~~~gn~~pr~~~~~~~~~n~~G~~n~g~~~~~~~~~~~~ 87 (311)
T d1juba_ 8 NAKFANPFMNASGVHCMTIEDLEELKASQAGAYITKSSTLEKREGNPLPRYVDLELGSINSMGLPNLGFDYYLDYVLKNQ 87 (311)
T ss_dssp TEEESSSEEECTTSSCSSHHHHHHHHHSSCSCCBCCCBCSSCBCCSCSCCEEEETTEEEECCCCCBSCHHHHHHHHHHHH
T ss_pred CEecCCCCEECCCCCCCCHHHHHHHHHCCCcEEEEEEEeeccccCCCCCeEEEccccchhhhhhcCchhHHHHHHHHHhh
Confidence 56789999999554445666666667778877777766554321100000 0011
Q ss_pred ccCCCCCCEEEEEecCChhHHHHHHHHhc--CCCCeEeeccCCCce
Q psy18231 65 STSPEDTPLVVQFASNNHDDFVRATQYVA--PHCNGVDLNCGCPQR 108 (540)
Q Consensus 65 ~~~~~~~~~~~q~~~~~~~~~~~~~~~~~--~~~~~id~~~gc~~~ 108 (540)
.....+.|+++-+.+...++....++.+. +..+.+.+|..||..
T Consensus 88 ~~~~~~~pvi~si~~~~~~~~~~~~~~~~~~~~ad~ielNiscPn~ 133 (311)
T d1juba_ 88 KENAQEGPIFFSIAGMSAAENIAMLKKIQESDFSGITELNLSCPNV 133 (311)
T ss_dssp HHTCSSSCCEEEECCSSHHHHHHHHHHHHHSCCCSEEEEESCCCCS
T ss_pred hhcccCCCceeeccccccchhHHHHHHHhhccccceeeeccccccc
Confidence 11345779999999999887766655443 357899999999964
|
| >d1djqa1 c.1.4.1 (A:1-340) Trimethylamine dehydrogenase, N-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Trimethylamine dehydrogenase, N-terminal domain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=80.15 E-value=1.2 Score=38.60 Aligned_cols=42 Identities=10% Similarity=-0.108 Sum_probs=30.6
Q ss_pred cceecCCceEEeccCCCC--C-----HHHHHHHHHcCCCEEEeeeeecc
Q psy18231 10 RSTLLKNLKHCDSTLWTS--K-----LNFRQLVRSHNVDLCFTPMIIAD 51 (540)
Q Consensus 10 ~~~~~~~~~~~ap~~~~~--~-----~~~r~~~~~~~~~~~~~~~~~~~ 51 (540)
+++.+++|+++|||+... + ..++...++.|+++++||++.-.
T Consensus 16 g~~~l~NRiv~apm~~~~~~~~~~~~~~~~~~rA~gG~gliite~~~v~ 64 (340)
T d1djqa1 16 GPKTLRNRFYQVPHAIGAGSDKPGFQSAHRSVKAEGGWAALNTEYCSIN 64 (340)
T ss_dssp TTEEESSSEEECCCCCSCTTTCHHHHHHHHHHHHHTTCSEEEEEEEESS
T ss_pred CCEEECCCeEeCCCCCCCCCCCCHHHHHHHHHHhccCeEEEEEEEEEec
Confidence 467899999999998432 1 23555555669999999997643
|