Psyllid ID: psy1854

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110
Protein Sequence
CLQEENKILEDPKSILKLETPPPKRVVAIFEALKRETHWLSMKMDQQFRLKWNNHCNTLLQVFGNLLKTETLVDCTIGADGQYLKAHKVVVSACSPYFQVSWDVVFCMLA
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccHHHHHHHHHHccccccccEEEEEccccHHHHHHHHHHHHccccEEEEEEEEccEEEEEEEHHHHcccHHHHHHHHHcccccc
Secondary Structure Prediction (SSPRO)
cccHHHcccccccccccccccccccccccccccccccccHcccccccEEEEccccHHHHHHHHHHHHcccccEEEEEEccccEEHHHHEEEccccHHHHHHEEEcccccc
Coil and Loop (DISEMBL)
clqeenkiledpksilkletpppkRVVAIFEALKRETHWLSMKMDQQFRLKWNNHCNTLLQVFGNLlktetlvdctigadgqyLKAHKVVVSACSPYFQVSWDVVFCMLA
Flexible Loop (DISEMBL)
clqeenkiledpksilkletpppkRVVAIFEALKRETHWLSMKMDQQFRLKWNNHCNTLLQVFGNLLKTETLVDCTIGADGQYLKAHKVVVSACSPYFQVSWDVVFCMLA
Low Complexity Region (SEG)
CLQEENKILEDPKSILKLETPPPKRVVAIFEALKRETHWLSMKMDQQFRLKWNNHCNTLLQVFGNLLKTETLVDCTIGADGQYLKAHKVVVSACSPYFQVSWDVVFCMLA
Disordered region (IsUnstruct)
************************RVVAIFEALKRETHWLSMKMDQQFRLKWNNHCNTLLQVFGNLLKTETLVDCTIGADGQYLKAHKVVVSACSPYFQVSWDVVFCML*
Disordered Region (DISOPRED)
************************************************RLKWNNHCNTLLQVFGNLLKTETLVDCTIGADGQYLKAHKVVVSACSPYFQVSWDVVFCMLA
Disordered Region (DISEMBL)
CLQEENKILEDPKSILKLETPPPKRVVAIFEALKRETHWLSMKMDQQFRLKWNNHCNTLLQVFGNLLKTETLVDCTIGADGQYLKAHKVVVSACSPYFQVSWDVVFCMLA
Disordered Region (DISPRO)
CL****K**********************************MKMDQQFRLKWNNHCNTLLQVFGNLLKTETLVDCTIGADGQYLKAHKVVVSACSPYFQVSWDVVFCMLA
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
CLQEENKILEDPKSILKLETPPPKRVVAIFEALKRETHWLSMKMDQQFRLKWNNHCNTLLQVFGNLLKTETLVDCTIGADGQYLKAHKVVVSACSPYFQVSWDVVFCMLA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	110	2.2.26 [Sep-21-2011]
Q9V5M6	963	Longitudinals lacking pro	no	N/A	0.518	0.059	0.684	2e-18
Q867Z4	970	Longitudinals lacking pro	no	N/A	0.518	0.058	0.684	2e-18
Q7KQZ4	787	Longitudinals lacking pro	no	N/A	0.518	0.072	0.684	2e-18
P42284	549	Longitudinals lacking pro	no	N/A	0.518	0.103	0.684	2e-18
P42283	891	Longitudinals lacking pro	no	N/A	0.518	0.063	0.684	2e-18
Q9V5M3	878	Longitudinals lacking pro	no	N/A	0.518	0.064	0.684	3e-18
P17789	643	Protein tramtrack, beta i	no	N/A	0.518	0.088	0.603	2e-14
P42282	813	Protein tramtrack, alpha	no	N/A	0.518	0.070	0.603	2e-14
Q9W0K4	1067	Protein bric-a-brac 2 OS=	no	N/A	0.709	0.073	0.410	4e-13
Q9W0K7	977	Protein bric-a-brac 1 OS=	no	N/A	0.490	0.055	0.555	9e-13

>sp|Q9V5M6|LOLA5_DROME Longitudinals lacking protein, isoforms J/P/Q/S/Z OS=Drosophila melanogaster GN=lola PE=1 SV=4

 Score = 91.3 bits (225), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 39/57 (68%), Positives = 48/57 (84%)

Query: 42 MKMDQQFRLKWNNHCNTLLQVFGNLLKTETLVDCTIGADGQYLKAHKVVVSACSPYF 98
          M  DQQF L+WNNH +TL+ VF  LL+ ETLVDCT+ A+G++LKAHKVV+SACSPYF
Sbjct: 1  MDDDQQFCLRWNNHQSTLISVFDTLLENETLVDCTLAAEGKFLKAHKVVLSACSPYF 57

Putative transcription factor required for axon growth and guidance in the central and peripheral nervous systems. Repels CNS axons away from the midline by promoting the expression of the midline repellent sli and its receptor robo.
Drosophila melanogaster (taxid: 7227)

>sp|Q867Z4|LOLA4_DROME Longitudinals lacking protein, isoforms F/I/K/T OS=Drosophila melanogaster GN=lola PE=1 SV=1

 Score = 91.3 bits (225), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 39/57 (68%), Positives = 48/57 (84%)

Query: 42 MKMDQQFRLKWNNHCNTLLQVFGNLLKTETLVDCTIGADGQYLKAHKVVVSACSPYF 98
          M  DQQF L+WNNH +TL+ VF  LL+ ETLVDCT+ A+G++LKAHKVV+SACSPYF
Sbjct: 1  MDDDQQFCLRWNNHQSTLISVFDTLLENETLVDCTLAAEGKFLKAHKVVLSACSPYF 57

Putative transcription factor required for axon growth and guidance in the central and peripheral nervous systems. Repels CNS axons away from the midline by promoting the expression of the midline repellent sli and its receptor robo.

Drosophila melanogaster (taxid: 7227)

>sp|Q7KQZ4|LOLA3_DROME Longitudinals lacking protein, isoforms A/B/D/L OS=Drosophila melanogaster GN=lola PE=1 SV=1

 Score = 91.3 bits (225), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 39/57 (68%), Positives = 48/57 (84%)

Query: 42 MKMDQQFRLKWNNHCNTLLQVFGNLLKTETLVDCTIGADGQYLKAHKVVVSACSPYF 98
          M  DQQF L+WNNH +TL+ VF  LL+ ETLVDCT+ A+G++LKAHKVV+SACSPYF
Sbjct: 1  MDDDQQFCLRWNNHQSTLISVFDTLLENETLVDCTLAAEGKFLKAHKVVLSACSPYF 57

Putative transcription factor required for axon growth and guidance in the central and peripheral nervous systems. Repels CNS axons away from the midline by promoting the expression of the midline repellent sli and its receptor robo.

Drosophila melanogaster (taxid: 7227)

>sp|P42284|LOLA2_DROME Longitudinals lacking protein, isoforms H/M/V OS=Drosophila melanogaster GN=lola PE=1 SV=2

 Score = 91.3 bits (225), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 39/57 (68%), Positives = 48/57 (84%)

Query: 42 MKMDQQFRLKWNNHCNTLLQVFGNLLKTETLVDCTIGADGQYLKAHKVVVSACSPYF 98
          M  DQQF L+WNNH +TL+ VF  LL+ ETLVDCT+ A+G++LKAHKVV+SACSPYF
Sbjct: 1  MDDDQQFCLRWNNHQSTLISVFDTLLENETLVDCTLAAEGKFLKAHKVVLSACSPYF 57

Putative transcription factor required for axon growth and guidance in the central and peripheral nervous systems. Repels CNS axons away from the midline by promoting the expression of the midline repellent sli and its receptor robo.

Drosophila melanogaster (taxid: 7227)

>sp|P42283|LOLA1_DROME Longitudinals lacking protein, isoform G OS=Drosophila melanogaster GN=lola PE=1 SV=2

 Score = 91.3 bits (225), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 39/57 (68%), Positives = 48/57 (84%)

Query: 42 MKMDQQFRLKWNNHCNTLLQVFGNLLKTETLVDCTIGADGQYLKAHKVVVSACSPYF 98
          M  DQQF L+WNNH +TL+ VF  LL+ ETLVDCT+ A+G++LKAHKVV+SACSPYF
Sbjct: 1  MDDDQQFCLRWNNHQSTLISVFDTLLENETLVDCTLAAEGKFLKAHKVVLSACSPYF 57

Putative transcription factor required for axon growth and guidance in the central and peripheral nervous systems. Repels CNS axons away from the midline by promoting the expression of the midline repellent sli and its receptor robo.

Drosophila melanogaster (taxid: 7227)

>sp|Q9V5M3|LOLA6_DROME Longitudinals lacking protein, isoforms N/O/W/X/Y OS=Drosophila melanogaster GN=lola PE=1 SV=3

 Score = 90.5 bits (223), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 39/57 (68%), Positives = 48/57 (84%)

Query: 42 MKMDQQFRLKWNNHCNTLLQVFGNLLKTETLVDCTIGADGQYLKAHKVVVSACSPYF 98
          M  DQQF L+WNNH +TL+ VF  LL+ ETLVDCT+ A+G++LKAHKVV+SACSPYF
Sbjct: 1  MDDDQQFCLRWNNHQSTLISVFDTLLENETLVDCTLAAEGKFLKAHKVVLSACSPYF 57

Putative transcription factor required for axon growth and guidance in the central and peripheral nervous systems. Repels CNS axons away from the midline by promoting the expression of the midline repellent sli and its receptor robo.

Drosophila melanogaster (taxid: 7227)

>sp|P17789|TTKB_DROME Protein tramtrack, beta isoform OS=Drosophila melanogaster GN=ttk PE=1 SV=2

 Score = 77.4 bits (189), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 35/58 (60%), Positives = 43/58 (74%), Gaps = 1/58 (1%)

Query: 42 MKM-DQQFRLKWNNHCNTLLQVFGNLLKTETLVDCTIGADGQYLKAHKVVVSACSPYF 98
          MKM  Q+F L+WNNH + LL VF  LL  ET  D T+  +GQ+LKAHK+V+SACSPYF
Sbjct: 1  MKMASQRFCLRWNNHQSNLLSVFDQLLHAETFTDVTLAVEGQHLKAHKMVLSACSPYF 58

Binds to a number of sites in the transcriptional regulatory region of ftz. Isoform beta is required to repress inappropriate segmentation gene transcription and repress genes incompatible with development of photoreceptor cell fates. Probable repressor of the transcription of the segmentation genes ftz, eve, h, odd, run, and en. Inhibits Trl-dependent activation of eve. May bind to the region AGGGC/TGG. Degradation of ttk is directed by binding of sinah or sina, via the adapter molecule phyl which binds to the BTB domain of ttk. A second method of degradation exists that is phyl-independent, this is mediated by recognition of motifs in the C-terminus of ttk.

Drosophila melanogaster (taxid: 7227)

>sp|P42282|TTKA_DROME Protein tramtrack, alpha isoform OS=Drosophila melanogaster GN=ttk PE=1 SV=3

 Score = 77.4 bits (189), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 35/58 (60%), Positives = 43/58 (74%), Gaps = 1/58 (1%)

Query: 42 MKM-DQQFRLKWNNHCNTLLQVFGNLLKTETLVDCTIGADGQYLKAHKVVVSACSPYF 98
          MKM  Q+F L+WNNH + LL VF  LL  ET  D T+  +GQ+LKAHK+V+SACSPYF
Sbjct: 1  MKMASQRFCLRWNNHQSNLLSVFDQLLHAETFTDVTLAVEGQHLKAHKMVLSACSPYF 58

Binds to a number of sites in the transcriptional regulatory region of ftz. Isoform alpha is required to repress genes that promote the R7 cell fate. Probable repressor of the transcription of the segmentation genes ftz, eve, h, odd, run, and en. May bind to the region 5'-AGGG[CT]GG-3'. Degradation of ttk is directed by binding of sinah or sina, via the adapter molecule phyl which binds to the BTB domain of ttk.

Drosophila melanogaster (taxid: 7227)

>sp|Q9W0K4|BAB2_DROME Protein bric-a-brac 2 OS=Drosophila melanogaster GN=bab2 PE=1 SV=2

 Score = 73.2 bits (178), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 39/95 (41%), Positives = 53/95 (55%), Gaps = 17/95 (17%)

Query: 5   ENKILEDPKSILKLETPPPKRVVAIFEALKRETHWLSMKMDQQFRLKWNNHCNTLLQVFG 64
           E KI  +P      ET PP+R +                  QQF L+WNN+ + L  VF 
Sbjct: 172 ETKIKTNP------ETKPPRRKIVPPSG-----------EGQQFCLRWNNYQSNLTNVFD 214

Query: 65  NLLKTETLVDCTIGADGQYLKAHKVVVSACSPYFQ 99
            LL++E+ VD T+  +G  +KAHK+V+SACSPYFQ
Sbjct: 215 ELLQSESFVDVTLSCEGHSIKAHKMVLSACSPYFQ 249

Probably acts as a transcriptional regulator. Required for the specification of the tarsal segment. Also involved in antenna development.

Drosophila melanogaster (taxid: 7227)

>sp|Q9W0K7|BAB1_DROME Protein bric-a-brac 1 OS=Drosophila melanogaster GN=bab1 PE=2 SV=2

 Score = 72.0 bits (175), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 30/54 (55%), Positives = 39/54 (72%)

Query: 46  QQFRLKWNNHCNTLLQVFGNLLKTETLVDCTIGADGQYLKAHKVVVSACSPYFQ 99
           QQF L+WNN+   L  +F  LL+ E  VD T+  DG+ +KAHK+V+SACSPYFQ
Sbjct: 100 QQFCLRWNNYQTNLTTIFDQLLQNECFVDVTLACDGRSMKAHKMVLSACSPYFQ 153

Probably acts as a transcriptional regulator. Required for the specification of the tarsal segment. Also involved in antenna development.

Drosophila melanogaster (taxid: 7227)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	110
195582232	671	GD25965 [Drosophila simulans] gi|1941929	0.609	0.099	0.626	1e-18
467229	467	Lola protein short isoform [Drosophila m	0.518	0.122	0.684	7e-17
45552563	577	longitudinals lacking, isoform Y [Drosop	0.518	0.098	0.684	7e-17
45552565	602	longitudinals lacking, isoform X [Drosop	0.518	0.094	0.684	7e-17
28573897	603	longitudinals lacking, isoform Q [Drosop	0.518	0.094	0.684	7e-17
24652470	891	longitudinals lacking, isoform G [Drosop	0.518	0.063	0.684	7e-17
28573881	706	longitudinals lacking, isoform A [Drosop	0.518	0.080	0.684	7e-17
24652482	787	longitudinals lacking, isoform C [Drosop	0.518	0.072	0.684	7e-17
28573909	465	longitudinals lacking, isoform M [Drosop	0.518	0.122	0.684	7e-17
29539425	602	Lola protein isoform S [Drosophila melan	0.518	0.094	0.684	7e-17

>gi|195582232|ref|XP_002080932.1| GD25965 [Drosophila simulans] gi|194192941|gb|EDX06517.1| GD25965 [Drosophila simulans]

 Score = 97.1 bits (240), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 42/67 (62%), Positives = 53/67 (79%)

Query: 42  MKMDQQFRLKWNNHCNTLLQVFGNLLKTETLVDCTIGADGQYLKAHKVVVSACSPYFQVS 101
           M  DQQF L+WNNH +TL+ VF  LL+ ETLVDCT+ A+G++LKAHKVV+SACSPYF + 
Sbjct: 1   MDDDQQFCLRWNNHQSTLISVFDTLLENETLVDCTLAAEGKFLKAHKVVLSACSPYFAMD 60

Query: 102 WDVVFCM 108
            D  FC+
Sbjct: 61  DDQQFCL 67

Source: Drosophila simulans

Species: Drosophila simulans

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|467229|gb|AAA19592.1| Lola protein short isoform [Drosophila melanogaster]

 Score = 91.3 bits (225), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 39/57 (68%), Positives = 48/57 (84%)

Query: 42 MKMDQQFRLKWNNHCNTLLQVFGNLLKTETLVDCTIGADGQYLKAHKVVVSACSPYF 98
          M  DQQF L+WNNH +TL+ VF  LL+ ETLVDCT+ A+G++LKAHKVV+SACSPYF
Sbjct: 1  MDDDQQFCLRWNNHQSTLISVFDTLLENETLVDCTLAAEGKFLKAHKVVLSACSPYF 57

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|45552563|ref|NP_995804.1| longitudinals lacking, isoform Y [Drosophila melanogaster] gi|45445595|gb|AAS64875.1| longitudinals lacking, isoform Y [Drosophila melanogaster]

 Score = 91.3 bits (225), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 39/57 (68%), Positives = 48/57 (84%)

Query: 42 MKMDQQFRLKWNNHCNTLLQVFGNLLKTETLVDCTIGADGQYLKAHKVVVSACSPYF 98
          M  DQQF L+WNNH +TL+ VF  LL+ ETLVDCT+ A+G++LKAHKVV+SACSPYF
Sbjct: 1  MDDDQQFCLRWNNHQSTLISVFDTLLENETLVDCTLAAEGKFLKAHKVVLSACSPYF 57

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|45552565|ref|NP_995805.1| longitudinals lacking, isoform X [Drosophila melanogaster] gi|45445594|gb|AAS64874.1| longitudinals lacking, isoform X [Drosophila melanogaster]

 Score = 91.3 bits (225), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 39/57 (68%), Positives = 48/57 (84%)

Query: 42 MKMDQQFRLKWNNHCNTLLQVFGNLLKTETLVDCTIGADGQYLKAHKVVVSACSPYF 98
          M  DQQF L+WNNH +TL+ VF  LL+ ETLVDCT+ A+G++LKAHKVV+SACSPYF
Sbjct: 1  MDDDQQFCLRWNNHQSTLISVFDTLLENETLVDCTLAAEGKFLKAHKVVLSACSPYF 57

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|28573897|ref|NP_788319.1| longitudinals lacking, isoform Q [Drosophila melanogaster] gi|28380930|gb|AAM68768.2| longitudinals lacking, isoform Q [Drosophila melanogaster] gi|281183401|gb|ADA53569.1| FI13033p [Drosophila melanogaster]

 Score = 91.3 bits (225), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 39/57 (68%), Positives = 48/57 (84%)

Query: 42 MKMDQQFRLKWNNHCNTLLQVFGNLLKTETLVDCTIGADGQYLKAHKVVVSACSPYF 98
          M  DQQF L+WNNH +TL+ VF  LL+ ETLVDCT+ A+G++LKAHKVV+SACSPYF
Sbjct: 1  MDDDQQFCLRWNNHQSTLISVFDTLLENETLVDCTLAAEGKFLKAHKVVLSACSPYF 57

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|24652470|ref|NP_524766.2| longitudinals lacking, isoform G [Drosophila melanogaster] gi|78711875|ref|NP_788312.2| longitudinals lacking, isoform R [Drosophila melanogaster] gi|317373382|sp|P42283.2|LOLA1_DROME RecName: Full=Longitudinals lacking protein, isoform G gi|21627542|gb|AAF58782.2| longitudinals lacking, isoform G [Drosophila melanogaster] gi|71911712|gb|AAO41425.2| longitudinals lacking, isoform R [Drosophila melanogaster]

 Score = 91.3 bits (225), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 39/57 (68%), Positives = 48/57 (84%)

Query: 42 MKMDQQFRLKWNNHCNTLLQVFGNLLKTETLVDCTIGADGQYLKAHKVVVSACSPYF 98
          M  DQQF L+WNNH +TL+ VF  LL+ ETLVDCT+ A+G++LKAHKVV+SACSPYF
Sbjct: 1  MDDDQQFCLRWNNHQSTLISVFDTLLENETLVDCTLAAEGKFLKAHKVVLSACSPYF 57

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|28573881|ref|NP_724953.2| longitudinals lacking, isoform A [Drosophila melanogaster] gi|28380928|gb|AAF58775.3| longitudinals lacking, isoform A [Drosophila melanogaster] gi|28626486|gb|AAO49162.1| LD03274p [Drosophila melanogaster] gi|220942526|gb|ACL83806.1| lola-PA [synthetic construct] gi|220952742|gb|ACL88914.1| lola-PA [synthetic construct]

 Score = 91.3 bits (225), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 39/57 (68%), Positives = 48/57 (84%)

Query: 42 MKMDQQFRLKWNNHCNTLLQVFGNLLKTETLVDCTIGADGQYLKAHKVVVSACSPYF 98
          M  DQQF L+WNNH +TL+ VF  LL+ ETLVDCT+ A+G++LKAHKVV+SACSPYF
Sbjct: 1  MDDDQQFCLRWNNHQSTLISVFDTLLENETLVDCTLAAEGKFLKAHKVVLSACSPYF 57

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|24652482|ref|NP_724946.1| longitudinals lacking, isoform C [Drosophila melanogaster] gi|78711864|ref|NP_724949.2| longitudinals lacking, isoform B [Drosophila melanogaster] gi|73920870|sp|Q7KQZ4.1|LOLA3_DROME RecName: Full=Longitudinals lacking protein, isoforms A/B/D/L gi|7303724|gb|AAF58773.1| longitudinals lacking, isoform C [Drosophila melanogaster] gi|71911713|gb|AAF58776.3| longitudinals lacking, isoform B [Drosophila melanogaster]

 Score = 91.3 bits (225), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 39/57 (68%), Positives = 48/57 (84%)

Query: 42 MKMDQQFRLKWNNHCNTLLQVFGNLLKTETLVDCTIGADGQYLKAHKVVVSACSPYF 98
          M  DQQF L+WNNH +TL+ VF  LL+ ETLVDCT+ A+G++LKAHKVV+SACSPYF
Sbjct: 1  MDDDQQFCLRWNNHQSTLISVFDTLLENETLVDCTLAAEGKFLKAHKVVLSACSPYF 57

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|28573909|ref|NP_788320.1| longitudinals lacking, isoform M [Drosophila melanogaster] gi|28380931|gb|AAO41431.1| longitudinals lacking, isoform M [Drosophila melanogaster] gi|29539389|dbj|BAC67577.1| Lola protein isoform A [Drosophila melanogaster] gi|29539429|dbj|BAC67597.1| Lola protein isoform A [Drosophila melanogaster] gi|29539469|dbj|BAC67617.1| Lola protein isoform A [Drosophila melanogaster] gi|29539509|dbj|BAC67637.1| Lola protein isoform A [Drosophila melanogaster]

 Score = 91.3 bits (225), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 39/57 (68%), Positives = 48/57 (84%)

Query: 42 MKMDQQFRLKWNNHCNTLLQVFGNLLKTETLVDCTIGADGQYLKAHKVVVSACSPYF 98
          M  DQQF L+WNNH +TL+ VF  LL+ ETLVDCT+ A+G++LKAHKVV+SACSPYF
Sbjct: 1  MDDDQQFCLRWNNHQSTLISVFDTLLENETLVDCTLAAEGKFLKAHKVVLSACSPYF 57

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|29539425|dbj|BAC67595.1| Lola protein isoform S [Drosophila melanogaster] gi|29539465|dbj|BAC67615.1| Lola protein isoform S [Drosophila melanogaster] gi|29539505|dbj|BAC67635.1| Lola protein isoform S [Drosophila melanogaster] gi|29539545|dbj|BAC67655.1| Lola protein isoform S [Drosophila melanogaster]

 Score = 91.3 bits (225), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 39/57 (68%), Positives = 48/57 (84%)

Query: 42 MKMDQQFRLKWNNHCNTLLQVFGNLLKTETLVDCTIGADGQYLKAHKVVVSACSPYF 98
          M  DQQF L+WNNH +TL+ VF  LL+ ETLVDCT+ A+G++LKAHKVV+SACSPYF
Sbjct: 1  MDDDQQFCLRWNNHQSTLISVFDTLLENETLVDCTLAAEGKFLKAHKVVLSACSPYF 57

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	110
FB|FBgn0005630	970	lola "longitudinals lacking" [	0.518	0.058	0.684	1.9e-16
FB|FBgn0003870	813	ttk "tramtrack" [Drosophila me	0.518	0.070	0.603	4e-13
FB|FBgn0025525	1067	bab2 "bric a brac 2" [Drosophi	0.490	0.050	0.555	2.9e-11
FB|FBgn0004870	977	bab1 "bric a brac 1" [Drosophi	0.490	0.055	0.555	3.3e-11
FB|FBgn0004652	955	fru "fruitless" [Drosophila me	0.509	0.058	0.517	6.8e-11
FB|FBgn0263108	798	BtbVII "BTB-protein-VII" [Dros	0.490	0.067	0.555	1.4e-10
FB|FBgn0022238	127	lolal "lola like" [Drosophila	0.527	0.456	0.465	3.2e-10
FB|FBgn0003715	1046	CG16778 [Drosophila melanogast	0.472	0.049	0.538	1.1e-09
FB|FBgn0000210	880	br "broad" [Drosophila melanog	0.490	0.061	0.481	2.4e-09
FB|FBgn0038339	967	CG6118 [Drosophila melanogaste	0.6	0.068	0.424	1.2e-08

FB|FBgn0005630 lola "longitudinals lacking" [Drosophila melanogaster (taxid:7227)]

 Score = 216 (81.1 bits), Expect = 1.9e-16, P = 1.9e-16
 Identities = 39/57 (68%), Positives = 48/57 (84%)

Query:    42 MKMDQQFRLKWNNHCNTLLQVFGNLLKTETLVDCTIGADGQYLKAHKVVVSACSPYF 98
             M  DQQF L+WNNH +TL+ VF  LL+ ETLVDCT+ A+G++LKAHKVV+SACSPYF
Sbjct:     1 MDDDQQFCLRWNNHQSTLISVFDTLLENETLVDCTLAAEGKFLKAHKVVLSACSPYF 57

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=ISS

GO:0007411 "axon guidance" evidence=IGI;NAS;IMP

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;NAS

GO:0007409 "axonogenesis" evidence=IMP

GO:0005634 "nucleus" evidence=NAS;IDA

GO:0006357 "regulation of transcription from RNA polymerase II promoter" evidence=NAS

GO:0016199 "axon midline choice point recognition" evidence=IGI;IMP

GO:0005515 "protein binding" evidence=IPI

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0019730 "antimicrobial humoral response" evidence=IMP

GO:0045476 "nurse cell apoptotic process" evidence=IMP

GO:0045467 "R7 cell development" evidence=IMP

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IMP

GO:0007464 "R3/R4 cell fate commitment" evidence=IMP

GO:0048854 "brain morphogenesis" evidence=IMP

GO:0031987 "locomotion involved in locomotory behavior" evidence=IMP

GO:0001964 "startle response" evidence=IMP

GO:0002121 "inter-male aggressive behavior" evidence=IMP

GO:0008406 "gonad development" evidence=IMP

GO:0022008 "neurogenesis" evidence=IMP

FB|FBgn0003870 ttk "tramtrack" [Drosophila melanogaster (taxid:7227)]

 Score = 184 (69.8 bits), Expect = 4.0e-13, P = 4.0e-13
 Identities = 35/58 (60%), Positives = 43/58 (74%)

Query:    42 MKM-DQQFRLKWNNHCNTLLQVFGNLLKTETLVDCTIGADGQYLKAHKVVVSACSPYF 98
             MKM  Q+F L+WNNH + LL VF  LL  ET  D T+  +GQ+LKAHK+V+SACSPYF
Sbjct:     1 MKMASQRFCLRWNNHQSNLLSVFDQLLHAETFTDVTLAVEGQHLKAHKMVLSACSPYF 58

GO:0000978 "RNA polymerase II core promoter proximal region sequence-specific DNA binding" evidence=IDA

GO:0005634 "nucleus" evidence=NAS;IDA

GO:0007422 "peripheral nervous system development" evidence=TAS

GO:0006357 "regulation of transcription from RNA polymerase II promoter" evidence=NAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=NAS

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IDA

GO:0000980 "RNA polymerase II distal enhancer sequence-specific DNA binding" evidence=IDA

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=NAS

GO:0045467 "R7 cell development" evidence=IMP;TAS

GO:0005700 "polytene chromosome" evidence=IDA

GO:0042803 "protein homodimerization activity" evidence=IPI

GO:0005515 "protein binding" evidence=IPI

GO:0046843 "dorsal appendage formation" evidence=IMP

GO:0008270 "zinc ion binding" evidence=IEA

GO:0001709 "cell fate determination" evidence=TAS

GO:0017053 "transcriptional repressor complex" evidence=IPI

GO:0003682 "chromatin binding" evidence=IDA

GO:0001078 "RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in negative regulation of transcription" evidence=IDA

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IDA

GO:0030707 "ovarian follicle cell development" evidence=IMP

GO:0007298 "border follicle cell migration" evidence=IMP

GO:0048813 "dendrite morphogenesis" evidence=IMP

GO:0048666 "neuron development" evidence=IMP

GO:0035001 "dorsal trunk growth, open tracheal system" evidence=IMP

GO:0060446 "branching involved in open tracheal system development" evidence=IMP

GO:0016476 "regulation of embryonic cell shape" evidence=IMP

GO:0035151 "regulation of tube size, open tracheal system" evidence=IMP

GO:0040003 "chitin-based cuticle development" evidence=IMP

GO:0035147 "branch fusion, open tracheal system" evidence=IMP

GO:0007426 "tracheal outgrowth, open tracheal system" evidence=IMP

GO:0001964 "startle response" evidence=IMP

GO:0031987 "locomotion involved in locomotory behavior" evidence=IMP

GO:0048854 "brain morphogenesis" evidence=IMP

GO:0002121 "inter-male aggressive behavior" evidence=IMP

GO:0008360 "regulation of cell shape" evidence=IMP

GO:0042675 "compound eye cone cell differentiation" evidence=IMP

GO:0048053 "R1/R6 development" evidence=IMP

GO:0048750 "compound eye corneal lens morphogenesis" evidence=IMP

GO:0007476 "imaginal disc-derived wing morphogenesis" evidence=IMP

FB|FBgn0025525 bab2 "bric a brac 2" [Drosophila melanogaster (taxid:7227)]

 Score = 168 (64.2 bits), Expect = 2.9e-11, P = 2.9e-11
 Identities = 30/54 (55%), Positives = 41/54 (75%)

Query:    46 QQFRLKWNNHCNTLLQVFGNLLKTETLVDCTIGADGQYLKAHKVVVSACSPYFQ 99
             QQF L+WNN+ + L  VF  LL++E+ VD T+  +G  +KAHK+V+SACSPYFQ
Sbjct:   196 QQFCLRWNNYQSNLTNVFDELLQSESFVDVTLSCEGHSIKAHKMVLSACSPYFQ 249

GO:0005515 "protein binding" evidence=IPI

GO:0006351 "transcription, DNA-dependent" evidence=IEP

GO:0008585 "female gonad development" evidence=IGI;IMP

GO:0005634 "nucleus" evidence=IDA;TAS

GO:0007455 "eye-antennal disc morphogenesis" evidence=ISS

GO:0007480 "imaginal disc-derived leg morphogenesis" evidence=IGI;IMP

GO:0003677 "DNA binding" evidence=NAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=TAS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0005700 "polytene chromosome" evidence=IDA

GO:0003680 "AT DNA binding" evidence=IDA

GO:0005701 "polytene chromosome chromocenter" evidence=IDA

FB|FBgn0004870 bab1 "bric a brac 1" [Drosophila melanogaster (taxid:7227)]

 Score = 167 (63.8 bits), Expect = 3.3e-11, P = 3.3e-11
 Identities = 30/54 (55%), Positives = 39/54 (72%)

Query:    46 QQFRLKWNNHCNTLLQVFGNLLKTETLVDCTIGADGQYLKAHKVVVSACSPYFQ 99
             QQF L+WNN+   L  +F  LL+ E  VD T+  DG+ +KAHK+V+SACSPYFQ
Sbjct:   100 QQFCLRWNNYQTNLTTIFDQLLQNECFVDVTLACDGRSMKAHKMVLSACSPYFQ 153

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;TAS

GO:0006351 "transcription, DNA-dependent" evidence=IEP;ISS

GO:0007548 "sex differentiation" evidence=IGI;IMP;TAS

GO:0048071 "sex-specific pigmentation" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

GO:0048092 "negative regulation of male pigmentation" evidence=NAS

GO:0046660 "female sex differentiation" evidence=TAS

GO:0005634 "nucleus" evidence=IDA

GO:0007480 "imaginal disc-derived leg morphogenesis" evidence=IGI;IMP

GO:0008585 "female gonad development" evidence=IGI;IMP

GO:0007455 "eye-antennal disc morphogenesis" evidence=IEP

GO:0003677 "DNA binding" evidence=NAS

GO:0048070 "regulation of developmental pigmentation" evidence=TAS

GO:0048086 "negative regulation of developmental pigmentation" evidence=TAS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0003680 "AT DNA binding" evidence=IDA

FB|FBgn0004652 fru "fruitless" [Drosophila melanogaster (taxid:7227)]

 Score = 164 (62.8 bits), Expect = 6.8e-11, P = 6.8e-11
 Identities = 29/56 (51%), Positives = 40/56 (71%)

Query:    44 MDQQFRLKWNNHCNTLLQVFGNLLKTETLVDCTIGADGQYLKAHKVVVSACSPYFQ 99
             MDQQF L+WNNH   L  V  +LL+ E L D T+  +G+ +KAH+ ++SACSPYF+
Sbjct:   102 MDQQFCLRWNNHPTNLTGVLTSLLQREALCDVTLACEGETVKAHQTILSACSPYFE 157

GO:0016545 "male courtship behavior, veined wing vibration" evidence=IMP

GO:0008049 "male courtship behavior" evidence=NAS;IMP;TAS

GO:0007618 "mating" evidence=IMP

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=NAS;TAS

GO:0045433 "male courtship behavior, veined wing generated song production" evidence=IMP;TAS

GO:0007517 "muscle organ development" evidence=IMP

GO:0007530 "sex determination" evidence=IMP;TAS

GO:0007275 "multicellular organismal development" evidence=IMP

GO:0005634 "nucleus" evidence=NAS

GO:0007617 "mating behavior" evidence=IMP

GO:0016543 "male courtship behavior, orientation prior to leg tapping and wing vibration" evidence=NAS

GO:0007620 "copulation" evidence=NAS;TAS

GO:0007417 "central nervous system development" evidence=IMP;TAS

GO:0046661 "male sex differentiation" evidence=TAS

GO:0048047 "mating behavior, sex discrimination" evidence=IGI;IMP;TAS

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0002118 "aggressive behavior" evidence=IMP

GO:0016199 "axon midline choice point recognition" evidence=IMP

GO:0048813 "dendrite morphogenesis" evidence=IMP

FB|FBgn0263108 BtbVII "BTB-protein-VII" [Drosophila melanogaster (taxid:7227)]

 Score = 160 (61.4 bits), Expect = 1.4e-10, P = 1.4e-10
 Identities = 30/54 (55%), Positives = 39/54 (72%)

Query:    46 QQFRLKWNNHCNTLLQVFGNLLKTETLVDCTIGADGQYLKAHKVVVSACSPYFQ 99
             QQF L+WNNH    + V  +LL   TLVD T+ A+G+ L+AHK+V+SACS YFQ
Sbjct:     4 QQFCLRWNNHQPNFISVCSSLLHNGTLVDVTLAAEGRQLQAHKIVLSACSSYFQ 57

GO:0003677 "DNA binding" evidence=IEA;NAS

FB|FBgn0022238 lolal "lola like" [Drosophila melanogaster (taxid:7227)]

 Score = 145 (56.1 bits), Expect = 3.2e-10, P = 3.2e-10
 Identities = 27/58 (46%), Positives = 38/58 (65%)

Query:    42 MKMDQQFRLKWNNHCNTLLQVFGNLLKTETLVDCTIGADGQYLKAHKVVVSACSPYFQ 99
             M  DQQF LKWN+    ++  F +L   ++  D T+  +GQ  KAHK+V+SACSPYF+
Sbjct:     2 MSSDQQFFLKWNDFQTNMVTSFRHLRDEKSFTDVTLACEGQTCKAHKMVLSACSPYFK 59

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISS

GO:0006357 "regulation of transcription from RNA polymerase II promoter" evidence=ISS

GO:0006342 "chromatin silencing" evidence=IMP

GO:0016458 "gene silencing" evidence=IMP

GO:0031519 "PcG protein complex" evidence=IPI

GO:0005515 "protein binding" evidence=IPI

GO:0007426 "tracheal outgrowth, open tracheal system" evidence=IMP

GO:0007435 "salivary gland morphogenesis" evidence=IMP

FB|FBgn0003715 CG16778 [Drosophila melanogaster (taxid:7227)]

 Score = 153 (58.9 bits), Expect = 1.1e-09, P = 1.1e-09
 Identities = 28/52 (53%), Positives = 39/52 (75%)

Query:    48 FRLKWNNHCNTLLQVFGNLLKTETLVDCTIGADGQYLKAHKVVVSACSPYFQ 99
             + L+WNNH N +L+ F  LLKT+TLVD T+      ++AHK+V+SACSP+FQ
Sbjct:   115 YSLRWNNHQNHILRAFDALLKTKTLVDVTLVCAETSIRAHKMVLSACSPFFQ 166

GO:0003677 "DNA binding" evidence=ISS;NAS

GO:0042332 "gravitaxis" evidence=IMP

GO:0007418 "ventral midline development" evidence=IMP

FB|FBgn0000210 br "broad" [Drosophila melanogaster (taxid:7227)]

 Score = 149 (57.5 bits), Expect = 2.4e-09, P = 2.4e-09
 Identities = 26/54 (48%), Positives = 38/54 (70%)

Query:    46 QQFRLKWNNHCNTLLQVFGNLLKTETLVDCTIGADGQYLKAHKVVVSACSPYFQ 99
             Q F L+WNN+ +++   F NL   E  VD T+  +G+ +KAH+VV+SACSPYF+
Sbjct:     5 QHFCLRWNNYQSSITSAFENLRDDEAFVDVTLACEGRSIKAHRVVLSACSPYFR 58

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IMP

GO:0000977 "RNA polymerase II regulatory region sequence-specific DNA binding" evidence=IDA

GO:0007458 "progression of morphogenetic furrow involved in compound eye morphogenesis" evidence=IMP

GO:0005634 "nucleus" evidence=IDA;NAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=NAS;TAS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=NAS

GO:0007552 "metamorphosis" evidence=NAS;TAS

GO:0035071 "salivary gland cell autophagic cell death" evidence=NAS

GO:0035070 "salivary gland histolysis" evidence=NAS;IMP

GO:0001752 "compound eye photoreceptor fate commitment" evidence=IMP

GO:0035072 "ecdysone-mediated induction of salivary gland cell autophagic cell death" evidence=NAS

GO:0006914 "autophagy" evidence=IMP

GO:0008219 "cell death" evidence=TAS

GO:0040034 "regulation of development, heterochronic" evidence=IMP;TAS

GO:0009608 "response to symbiont" evidence=IMP

GO:0035075 "response to ecdysone" evidence=IMP

GO:0035193 "larval central nervous system remodeling" evidence=IMP

GO:0003677 "DNA binding" evidence=IDA

GO:0007562 "eclosion" evidence=IEP

GO:0071390 "cellular response to ecdysone" evidence=IMP

GO:0008270 "zinc ion binding" evidence=IEA

GO:0048747 "muscle fiber development" evidence=IGI

GO:0048477 "oogenesis" evidence=IMP

GO:0048808 "male genitalia morphogenesis" evidence=IMP

GO:0010629 "negative regulation of gene expression" evidence=IMP

FB|FBgn0038339 CG6118 [Drosophila melanogaster (taxid:7227)]

 Score = 143 (55.4 bits), Expect = 1.2e-08, P = 1.2e-08
 Identities = 28/66 (42%), Positives = 39/66 (59%)

Query:    34 KRETHWLSMKMDQQFRLKWNNHCNTLLQVFGNLLKTETLVDCTIGADGQYLKAHKVVVSA 93
             K++  +       Q+ L WNN    + + F +L K E +VD TI A G+  KAHK+V+S 
Sbjct:   379 KQQQSYADPNTIDQYLLSWNNFHGNMCRGFHSLQKDEKMVDVTIAAGGKIFKAHKLVLSV 438

Query:    94 CSPYFQ 99
             CSPYFQ
Sbjct:   439 CSPYFQ 444

GO:0007052 "mitotic spindle organization" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	110
pfam00651	101	pfam00651, BTB, BTB/POZ domain	2e-09
smart00225	97	smart00225, BTB, Broad-Complex, Tramtrack and Bric	3e-04

>gnl|CDD|216043 pfam00651, BTB, BTB/POZ domain

 Score = 50.3 bits (121), Expect = 2e-09
 Identities = 14/38 (36%), Positives = 20/38 (52%)

Query: 63  FGNLLKTETLVDCTIGADGQYLKAHKVVVSACSPYFQV 100
              L +   L D T+    +   AHK V++ACSPYF+ 
Sbjct: 1   LNELRENGELCDVTLVVGDKEFHAHKAVLAACSPYFKA 38

The BTB (for BR-C, ttk and bab) or POZ (for Pox virus and Zinc finger) domain is present near the N-terminus of a fraction of zinc finger (pfam00096) proteins and in proteins that contain the pfam01344 motif such as Kelch and a family of pox virus proteins. The BTB/POZ domain mediates homomeric dimerisation and in some instances heteromeric dimerisation. The structure of the dimerised PLZF BTB/POZ domain has been solved and consists of a tightly intertwined homodimer. The central scaffolding of the protein is made up of a cluster of alpha-helices flanked by short beta-sheets at both the top and bottom of the molecule. POZ domains from several zinc finger proteins have been shown to mediate transcriptional repression and to interact with components of histone deacetylase co-repressor complexes including N-CoR and SMRT. The POZ or BTB domain is also known as BR-C/Ttk or ZiN. Length = 101

>gnl|CDD|197585 smart00225, BTB, Broad-Complex, Tramtrack and Bric a brac

 Score = 36.9 bits (86), Expect = 3e-04
 Identities = 12/26 (46%), Positives = 17/26 (65%)

Query: 74 DCTIGADGQYLKAHKVVVSACSPYFQ 99
          D T+   G+   AHK V++A SPYF+
Sbjct: 1  DVTLVVGGKKFHAHKAVLAAHSPYFK 26

Domain in Broad-Complex, Tramtrack and Bric a brac. Also known as POZ (poxvirus and zinc finger) domain. Known to be a protein-protein interaction motif found at the N-termini of several C2H2-type transcription factors as well as Shaw-type potassium channels. Known structure reveals a tightly intertwined dimer formed via interactions between N-terminal strand and helix structures. However in a subset of BTB/POZ domains, these two secondary structures appear to be missing. Be aware SMART predicts BTB/POZ domains without the beta1- and alpha1-secondary structures. Length = 97

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	110
PHA02713	557	hypothetical protein; Provisional	99.47
KOG4441|consensus	571		99.42
PHA02790	480	Kelch-like protein; Provisional	99.17
PF00651	111	BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (	99.08
PHA03098	534	kelch-like protein; Provisional	98.91
KOG4350|consensus	620		98.83
smart00225	90	BTB Broad-Complex, Tramtrack and Bric a brac. Doma	98.49
KOG2075|consensus	521		97.91
KOG0783|consensus	1267		97.65
KOG4591|consensus	280		97.59
KOG0783|consensus	1267		96.59
KOG4682|consensus	488		96.56
KOG2838|consensus	401		95.1
KOG2838|consensus	401		92.6

>PHA02713 hypothetical protein; Provisional

Probab=99.47  E-value=2.6e-14  Score=119.61  Aligned_cols=57  Identities=28%  Similarity=0.451  Sum_probs=53.0

Q ss_pred             eecCCcHHHHHHHHHhhhcCCCcceEEEEeC-CeEEEeEEEeeccCCHHHHHhhCCCC
Q psy1854          50 LKWNNHCNTLLQVFGNLLKTETLVDCTIGAD-GQYLKAHKVVVSACSPYFQVSWDVVF  106 (110)
Q Consensus        50 ~~~~~h~~~~l~~l~~lr~~~~~~DV~l~v~-g~~f~aHk~VLAa~S~yFr~mf~~~p  106 (110)
                      +.+..|...+++.|++||+++.+|||+|.++ |++|+|||.||||+|+|||+||++++
T Consensus         3 ~~~~~h~~~~l~~l~~lr~~~~l~DV~L~v~~~~~f~~Hr~vLaa~S~YF~amF~~~~   60 (557)
T PHA02713          3 IDDIKHNRRVVSNISNLLDDDILCDVIITIGDGEEIKAHKTILAAGSKYFRTLFTTPM   60 (557)
T ss_pred             cchhhhhHHHHHHHHHHHhCCCCCCEEEEeCCCCEEeehHHHHhhcCHHHHHHhcCCc
Confidence            3456899999999999999999999999997 89999999999999999999999864

>KOG4441|consensus

Probab=99.42  E-value=6.5e-14  Score=117.91  Aligned_cols=61  Identities=30%  Similarity=0.449  Sum_probs=57.0

Q ss_pred             CceeEeecCCcHHHHHHHHHhhhcCCCcceEEEEeCCeEEEeEEEeeccCCHHHHHhhCCC
Q psy1854          45 DQQFRLKWNNHCNTLLQVFGNLLKTETLVDCTIGADGQYLKAHKVVVSACSPYFQVSWDVV  105 (110)
Q Consensus        45 ~~~~~~~~~~h~~~~l~~l~~lr~~~~~~DV~l~v~g~~f~aHk~VLAa~S~yFr~mf~~~  105 (110)
                      .....+.+..|...+++.|+.+|+++.+|||+|.+++++|+|||+||||+|+|||+||++.
T Consensus         9 ~~~~~~~~~~h~~~~l~~l~~lr~~~~lcDv~L~v~~~~~~aHR~VLAa~S~YFraMFt~~   69 (571)
T KOG4441|consen    9 NSTSEFTDPSHSKFLLQGLNELREEGLLCDVTLLVGDREFPAHRVVLAACSPYFRAMFTSG   69 (571)
T ss_pred             ccccccccHHHHHHHHHHHHHHHHhCCCceEEEEECCeeechHHHHHHhccHHHHHHhcCC
Confidence            3556788889999999999999999999999999999999999999999999999999975

>PHA02790 Kelch-like protein; Provisional

Probab=99.17  E-value=1.6e-11  Score=101.00  Aligned_cols=46  Identities=15%  Similarity=0.229  Sum_probs=39.5

Q ss_pred             HHHHHhhhcCCCcceEEEEeCCeEEEeEEEeeccCCHHHHHhhCCCC
Q psy1854          60 LQVFGNLLKTETLVDCTIGADGQYLKAHKVVVSACSPYFQVSWDVVF  106 (110)
Q Consensus        60 l~~l~~lr~~~~~~DV~l~v~g~~f~aHk~VLAa~S~yFr~mf~~~p  106 (110)
                      .+.+-.+|.++.||||++++|+ +|+|||+||||+|+|||+||++++
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~-~~~~HR~VLAa~S~YFraMF~~~~   55 (480)
T PHA02790         10 CKNILALSMTKKFKTIIEAIGG-NIIVNSTILKKLSPYFRTHLRQKY   55 (480)
T ss_pred             hhhHHHHHhhhhhceEEEEcCc-EEeeehhhhhhcCHHHHHHhcCCc
Confidence            3455668999999998877655 899999999999999999999864

>PF00651 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (for BR-C, ttk and bab) [] or POZ (for Pox virus and Zinc finger) [] domain is present near the N terminus of a fraction of zinc finger (IPR007087 from INTERPRO) proteins and in proteins that contain the IPR006652 from INTERPRO motif such as Kelch and a family of pox virus proteins

Probab=99.08  E-value=4.4e-11  Score=78.73  Aligned_cols=43  Identities=28%  Similarity=0.530  Sum_probs=37.8

Q ss_pred             HHhhhcCCCcceEEEEeC-CeEEEeEEEeeccCCHHHHHhhCCC
Q psy1854          63 FGNLLKTETLVDCTIGAD-GQYLKAHKVVVSACSPYFQVSWDVV  105 (110)
Q Consensus        63 l~~lr~~~~~~DV~l~v~-g~~f~aHk~VLAa~S~yFr~mf~~~  105 (110)
                      |+++++++.++|++|.++ |+.|+|||.||+++|+||++||.+.
T Consensus         1 ~~~~~~~~~~~D~~i~v~d~~~~~vhk~iL~~~S~~F~~~~~~~   44 (111)
T PF00651_consen    1 LNDLFNSNEFSDVTIRVGDGKTFYVHKNILAARSPYFRNLFEGS   44 (111)
T ss_dssp             HHHHHHHTTS--EEEEETTTEEEEE-HHHHHHHBHHHHHHHTTT
T ss_pred             ChHHHcCCCCCCEEEEECCCEEEeechhhhhccchhhhhccccc
Confidence            578899999999999999 8999999999999999999999887

The BTB/POZ domain mediates homomeric dimerisation and in some instances heteromeric dimerisation []. The structure of the dimerised PLZF BTB/POZ domain has been solved and consists of a tightly intertwined homodimer. The central scaffolding of the protein is made up of a cluster of alpha-helices flanked by short beta-sheets at both the top and bottom of the molecule []. POZ domains from several zinc finger proteins have been shown to mediate transcriptional repression and to interact with components of histone deacetylase co-repressor complexes including N-CoR and SMRT [, , ]. The POZ or BTB domain is also known as BR-C/Ttk or ZiN.; GO: 0005515 protein binding; PDB: 3M5B_A 1R28_B 3LBZ_A 3E4U_F 3BIM_B 1R2B_A 1R29_A 2VPK_A 2YY9_B 3GA1_A ....

>PHA03098 kelch-like protein; Provisional

Probab=98.91  E-value=4.1e-10  Score=92.62  Aligned_cols=38  Identities=29%  Similarity=0.507  Sum_probs=35.9

Q ss_pred             CCCcceEEEEe--CCeEEEeEEEeeccCCHHHHHhhCCCC
Q psy1854          69 TETLVDCTIGA--DGQYLKAHKVVVSACSPYFQVSWDVVF  106 (110)
Q Consensus        69 ~~~~~DV~l~v--~g~~f~aHk~VLAa~S~yFr~mf~~~p  106 (110)
                      ++.||||+|.+  +|++|+|||.|||++|+||++||++++
T Consensus         6 ~~~~~Dv~l~~~~~~~~~~~Hk~vLaa~S~yF~~mf~~~~   45 (534)
T PHA03098          6 LQKFCDESIIIVNGGGIIKVHKIILSSSSEYFKKMFKNNF   45 (534)
T ss_pred             cCCCCCEEEEEEcCCEEEEeHHHHHHhhhHHHHHHHhCCC
Confidence            78999999998  999999999999999999999998864

>KOG4350|consensus

Probab=98.83  E-value=9.4e-10  Score=90.48  Aligned_cols=51  Identities=27%  Similarity=0.398  Sum_probs=46.0

Q ss_pred             HHHHHHHHHhhhcCCCcceEEEEeCCeEEEeEEEeeccCCHHHHHhhCCCC
Q psy1854          56 CNTLLQVFGNLLKTETLVDCTIGADGQYLKAHKVVVSACSPYFQVSWDVVF  106 (110)
Q Consensus        56 ~~~~l~~l~~lr~~~~~~DV~l~v~g~~f~aHk~VLAa~S~yFr~mf~~~p  106 (110)
                      ...+.+.+..+..+.+++||++++++++|||||+|||++|.|||+|+-+.+
T Consensus        28 ~~~fS~~~~~l~~~e~y~DVtfvve~~rfpAHRvILAaRs~yFRAlLYgGm   78 (620)
T KOG4350|consen   28 SNNFSQSFDELFTSEDYSDVTFVVEDTRFPAHRVILAARSSYFRALLYGGM   78 (620)
T ss_pred             ccchhHHHHHHhhcCcccceEEEEeccccchhhhhHHHHHHHHHHHHhhhh
Confidence            445577888999999999999999999999999999999999999997754

>smart00225 BTB Broad-Complex, Tramtrack and Bric a brac

Probab=98.49  E-value=5.4e-08  Score=60.13  Aligned_cols=34  Identities=44%  Similarity=0.747  Sum_probs=31.5

Q ss_pred             eEEEEeCCeEEEeEEEeeccCCHHHHHhhCCCCc
Q psy1854          74 DCTIGADGQYLKAHKVVVSACSPYFQVSWDVVFC  107 (110)
Q Consensus        74 DV~l~v~g~~f~aHk~VLAa~S~yFr~mf~~~p~  107 (110)
                      |+++.++|+.|++||.+|++.|+||++||.+.+.
T Consensus         1 dv~i~v~~~~~~~h~~iL~~~s~~f~~~~~~~~~   34 (90)
T smart00225        1 DVTLVVGGKKFKAHKAVLAACSPYFKALFSGDFK   34 (90)
T ss_pred             CeEEEECCEEEehHHHHHhhcCHHHHHHHcCCCc
Confidence            7889999999999999999999999999998653

Domain in Broad-Complex, Tramtrack and Bric a brac. Also known as POZ (poxvirus and zinc finger) domain. Known to be a protein-protein interaction motif found at the N-termini of several C2H2-type transcription factors as well as Shaw-type potassium channels. Known structure reveals a tightly intertwined dimer formed via interactions between N-terminal strand and helix structures. However in a subset of BTB/POZ domains, these two secondary structures appear to be missing. Be aware SMART predicts BTB/POZ domains without the beta1- and alpha1-secondary structures.

>KOG2075|consensus

Probab=97.91  E-value=7e-06  Score=68.50  Aligned_cols=58  Identities=22%  Similarity=0.237  Sum_probs=52.0

Q ss_pred             eEeecCCcHHHHHHHHHhhhcCCCcceEEEEeCC-----eEEEeEEEeeccCCHHHHHhhCCC
Q psy1854          48 FRLKWNNHCNTLLQVFGNLLKTETLVDCTIGADG-----QYLKAHKVVVSACSPYFQVSWDVV  105 (110)
Q Consensus        48 ~~~~~~~h~~~~l~~l~~lr~~~~~~DV~l~v~g-----~~f~aHk~VLAa~S~yFr~mf~~~  105 (110)
                      -.+.|..-...+......+++++..+|+.+++|+     ++|||||.|||.+|..|.+||.+.
T Consensus        90 ~~~nwq~~~~t~~er~~~l~~n~~~adv~fivg~~~~~~q~~paHk~vla~gS~VFdaMf~g~  152 (521)
T KOG2075|consen   90 GIPNWQAQKETMRERQAALFNNELLADVHFIVGEEDGGSQRIPAHKLVLADGSDVFDAMFYGG  152 (521)
T ss_pred             cCcccccchhhHHHhhHhhccCcccceeEEEeccCCCcccccchhhhhhhcchHHHHHHhccC
Confidence            3566777888899999999999999999999973     789999999999999999999875

>KOG0783|consensus

Probab=97.65  E-value=5.3e-05  Score=67.17  Aligned_cols=45  Identities=22%  Similarity=0.307  Sum_probs=37.6

Q ss_pred             HHHHHHhhhc----CCCcceEEEEeCCeEEEeEEEeeccCCHHHHHhhC
Q psy1854          59 LLQVFGNLLK----TETLVDCTIGADGQYLKAHKVVVSACSPYFQVSWD  103 (110)
Q Consensus        59 ~l~~l~~lr~----~~~~~DV~l~v~g~~f~aHk~VLAa~S~yFr~mf~  103 (110)
                      +.+.+..|..    .+.+.|||+.||++.|+|||.||+++|++||.+|-
T Consensus       541 fe~sf~kLl~e~~~~ds~hDVtf~vg~~~F~aHKfIl~~rs~flrkL~l  589 (1267)
T KOG0783|consen  541 FEGSFPKLLSEENYKDSFHDVTFYVGTSMFHAHKFILCARSSFLRKLLL  589 (1267)
T ss_pred             chhhhHHHhhccccccccceEEEEecCeecccceEEEEeccHHHHHHHH
Confidence            4555666644    45778899999999999999999999999999983

>KOG4591|consensus

Probab=97.59  E-value=3.1e-05  Score=59.17  Aligned_cols=47  Identities=28%  Similarity=0.472  Sum_probs=43.0

Q ss_pred             CCcHHHHHHHHHhhhcCCCcceEEEEeCC---eEEEeEEEeeccCCHHHH
Q psy1854          53 NNHCNTLLQVFGNLLKTETLVDCTIGADG---QYLKAHKVVVSACSPYFQ   99 (110)
Q Consensus        53 ~~h~~~~l~~l~~lr~~~~~~DV~l~v~g---~~f~aHk~VLAa~S~yFr   99 (110)
                      .++++.++.....+.++.+|+|+++.++|   +.+||||.||||+|.++.
T Consensus        47 dSF~SRLLaitadL~Ek~qfSDlk~K~~gns~k~i~AHKfVLAARsD~Wk   96 (280)
T KOG4591|consen   47 DSFISRLLAITADLLEKEQFSDLKFKFAGNSDKHIPAHKFVLAARSDFWK   96 (280)
T ss_pred             hhHHHHHHHHHHHHhhcccccceeEEecCCccccCchhhhhhhhhcchhh
Confidence            46888999999999999999999999985   779999999999999986

>KOG0783|consensus

Probab=96.59  E-value=0.00092  Score=59.59  Aligned_cols=33  Identities=39%  Similarity=0.560  Sum_probs=27.3

Q ss_pred             CcceEEEEe-CCeEEEeEEEeeccCCHHHHHhhC
Q psy1854          71 TLVDCTIGA-DGQYLKAHKVVVSACSPYFQVSWD  103 (110)
Q Consensus        71 ~~~DV~l~v-~g~~f~aHk~VLAa~S~yFr~mf~  103 (110)
                      ..-|+.|.+ +|++|+|||.+|+|+++||..||.
T Consensus       709 e~~d~~i~~KDGkvl~aHkc~L~aRlEYF~smf~  742 (1267)
T KOG0783|consen  709 ETMDTVIKLKDGKVLKAHKCFLSARLEYFSSMFQ  742 (1267)
T ss_pred             cceeEEEEecCCcCcccceeEeeeHHHHHHHHHH
Confidence            333555555 889999999999999999999995

>KOG4682|consensus

Probab=96.56  E-value=0.0025  Score=52.87  Aligned_cols=43  Identities=23%  Similarity=0.297  Sum_probs=38.8

Q ss_pred             HHHhhhcCCCcceEEEEeCCeEEEeEEEeeccCCHHHHHhhCCC
Q psy1854          62 VFGNLLKTETLVDCTIGADGQYLKAHKVVVSACSPYFQVSWDVV  105 (110)
Q Consensus        62 ~l~~lr~~~~~~DV~l~v~g~~f~aHk~VLAa~S~yFr~mf~~~  105 (110)
                      .++.++.++.-+||.+.+-|++|+.||.-|.. |+||.+||+|.
T Consensus        59 iyq~lf~q~enSDv~l~alg~eWrlHk~yL~Q-S~yf~smf~Gt  101 (488)
T KOG4682|consen   59 IYQNLFLQGENSDVILEALGFEWRLHKPYLFQ-SEYFKSMFSGT  101 (488)
T ss_pred             HHHHHHhcCCCcceehhhccceeeeeeeeeec-cHHHHHHhccc
Confidence            35677889999999999999999999999986 88999999875

>KOG2838|consensus

Probab=95.10  E-value=0.0054  Score=48.98  Aligned_cols=52  Identities=19%  Similarity=0.271  Sum_probs=44.1

Q ss_pred             cHHHHHHHHHhhhcCCCcceEEEEeCCeEEEeEEEeeccCCHHHHHhhCCCC
Q psy1854          55 HCNTLLQVFGNLLKTETLVDCTIGADGQYLKAHKVVVSACSPYFQVSWDVVF  106 (110)
Q Consensus        55 h~~~~l~~l~~lr~~~~~~DV~l~v~g~~f~aHk~VLAa~S~yFr~mf~~~p  106 (110)
                      ....+++.+...++.....|+-|+....-|||||.+||+++|+|+.+.++.|
T Consensus       113 ea~sf~kD~ad~ye~k~c~dldiiFkeTcfpahRA~laaRCpffK~l~nsd~  164 (401)
T KOG2838|consen  113 EANSFLKDFADGYERKVCGDLDIIFKETCFPAHRAFLAARCPFFKILANSDE  164 (401)
T ss_pred             chhHHHHHHhhhhheeeeccceeeeeeccchHHHHHHHhhCcchhhhccCCC
Confidence            3455677777777778888999999999999999999999999998887765

>KOG2838|consensus

Probab=92.60  E-value=0.022  Score=45.55  Aligned_cols=44  Identities=30%  Similarity=0.363  Sum_probs=31.7

Q ss_pred             HHHHHHhhhcCCCcceEEEE--eCC--------------eEEEeEEEeeccCCHHHHHhh
Q psy1854          59 LLQVFGNLLKTETLVDCTIG--ADG--------------QYLKAHKVVVSACSPYFQVSW  102 (110)
Q Consensus        59 ~l~~l~~lr~~~~~~DV~l~--v~g--------------~~f~aHk~VLAa~S~yFr~mf  102 (110)
                      +-..+..|+++...-|++|+  ++|              .+++||+.|.|++|++||.++
T Consensus       222 Ld~Dmkglfd~~c~~d~li~~ssD~elveafggeeNc~deeikahkai~aaRS~ffRnLL  281 (401)
T KOG2838|consen  222 LDEDMKGLFDQDCKHDDLIIESSDGELVEAFGGEENCEDEEIKAHKAIAAARSKFFRNLL  281 (401)
T ss_pred             hhHHHHHHHHhhcccCcEEEEeccchhhhhcCCcccchhHHHHHHHHHHHhhhHHHHHHH
Confidence            33445566666666665554  233              368999999999999999987

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	110
3m52_A	117	Crystal Structure Of The Btb Domain From The Miz-1Z		4e-04
2ihc_A	124	Crystal Structure Of The Bric-A-Brac (Btb) Domain O		6e-04
2q81_A	119	Crystal Structure Of The Miz-1 BtbPOZ DOMAIN Length		7e-04
2z8h_A	138	Structure Of Mouse Bach1 Btb Domain Length = 138		7e-04

>pdb|3M52|A Chain A, Crystal Structure Of The Btb Domain From The Miz-1ZBTB17 Transcription Regulator Length = 117

Iteration: 1
 Score = 39.7 bits (91), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 18/53 (33%), Positives = 29/53 (54%)
Query: 50  LKWNNHCNTLLQVFGNLLKTETLVDCTIGADGQYLKAHKVVVSACSPYFQVSW 102
           + +  H   +L+      +   L DCT   DG + KAHK V++ACS YF++ +
Sbjct: 3   MDFPQHSQHVLEQLNQQRQLGLLCDCTFVVDGVHFKAHKAVLAACSEYFKMLF 55

>pdb|2IHC|A Chain A, Crystal Structure Of The Bric-A-Brac (Btb) Domain Of Human Bach1 Length = 124

Iteration: 1
 Score = 39.3 bits (90), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 18/52 (34%), Positives = 28/52 (53%)
Query: 48 FRLKWNNHCNTLLQVFGNLLKTETLVDCTIGADGQYLKAHKVVVSACSPYFQ 99
          F  + + H   +L    +  K + L D TI  +GQ  +AH+ V++ACS YF 
Sbjct: 5  FAYESSVHSTNVLLSLNDQRKKDVLCDVTIFVEGQRFRAHRSVLAACSSYFH 56

>pdb|2Q81|A Chain A, Crystal Structure Of The Miz-1 BtbPOZ DOMAIN Length = 119

Iteration: 1
 Score = 38.9 bits (89), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 18/51 (35%), Positives = 28/51 (54%)
Query: 52  WNNHCNTLLQVFGNLLKTETLVDCTIGADGQYLKAHKVVVSACSPYFQVSW 102
           +  H   +L+      +   L DCT   DG + KAHK V++ACS YF++ +
Sbjct: 7   FPQHSQHVLEQLNQQRQLGLLCDCTFVVDGVHFKAHKAVLAACSEYFKMLF 57

>pdb|2Z8H|A Chain A, Structure Of Mouse Bach1 Btb Domain Length = 138

Iteration: 1
 Score = 38.9 bits (89), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 18/60 (30%), Positives = 31/60 (51%)
Query: 40 LSMKMDQQFRLKWNNHCNTLLQVFGNLLKTETLVDCTIGADGQYLKAHKVVVSACSPYFQ 99
          +S+     F  + + H   +L    +  K + L D T+  +GQ  +AH+ V++ACS YF 
Sbjct: 4  MSVSESAVFAYESSVHSTNVLLSLNDQRKKDVLCDVTVLVEGQRFRAHRSVLAACSSYFH 63

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	110
2z8h_A	138	Transcription regulator protein BACH1; BTB, POZ, d	2e-13
3fkc_A	116	Transcriptional regulator kaiso; zinc finger and B	2e-13
2ppi_A	144	Gigaxonin; BTB domain, protein degradation, struct	5e-13
3ga1_A	129	Nucleus accumbens-associated protein 1; BTB/POZ do	7e-13
1r29_A	127	B-cell lymphoma 6 protein; BTB domain, transcripti	7e-13
2ihc_A	124	Transcription regulator protein BACH1; BRIC-A-BRAC	1e-12
3ohu_A	125	Transcription regulator protein BACH2; BTB/POZ dom	2e-12
2vpk_A	116	Myoneurin; transcription regulation, transcription	2e-12
2yy9_A	135	Zinc finger and BTB domain-containing protein 48;	3e-12
2if5_A	120	Zinc finger and BTB domain-containing protein 7A;	4e-12
3b84_A	119	Zinc finger and BTB domain-containing protein 48;	1e-11
1buo_A	121	POZ domain, protein (promyelocytic leukemia zinc f	1e-11
2q81_A	119	MIZ-1 protein; BTB/POZ domain, transcription; HET:	2e-11
3hve_A	256	Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, dis	5e-11
4eoz_A	145	Speckle-type POZ protein; E3 ubiquitin ligase, nuc	5e-10
3htm_A	172	Speckle-type POZ protein; BTB, SPOP, ubiquitin, li	6e-10
3i3n_A	279	Kelch-like protein 11; structural genomics, BTB, K	7e-10
3m5b_A	119	Zinc finger and BTB domain-containing protein 32;	9e-09
3hqi_A	312	Speckle-type POZ protein; SPOP, ubiquitin, puckere	5e-08
2vkp_A	109	BTB/POZ domain-containing protein 6; protein-bindi	4e-07

>2z8h_A Transcription regulator protein BACH1; BTB, POZ, disulfide bond, activator, DNA-binding, nucleus, phosphorylation, repressor; 2.50A {Mus musculus} Length = 138

 Score = 60.7 bits (148), Expect = 2e-13
 Identities = 18/59 (30%), Positives = 31/59 (52%)

Query: 40 LSMKMDQQFRLKWNNHCNTLLQVFGNLLKTETLVDCTIGADGQYLKAHKVVVSACSPYF 98
          +S+     F  + + H   +L    +  K + L D T+  +GQ  +AH+ V++ACS YF
Sbjct: 4  MSVSESAVFAYESSVHSTNVLLSLNDQRKKDVLCDVTVLVEGQRFRAHRSVLAACSSYF 62

>3fkc_A Transcriptional regulator kaiso; zinc finger and BTB domain containing 33, kaiso transcriptio ZNF-kaiso, ZNF348,wugsc:H_DJ525N14.1; 1.70A {Homo sapiens} PDB: 3m4t_A 3m8v_A Length = 116

 Score = 60.0 bits (146), Expect = 2e-13
 Identities = 13/58 (22%), Positives = 23/58 (39%)

Query: 42 MKMDQQFRLKWNNHCNTLLQVFGNLLKTETLVDCTIGADGQYLKAHKVVVSACSPYFQ 99
          M+  +        +  +LL             D T+  + +  +AHK ++SA S YF 
Sbjct: 1  MESRKLISATDIQYSGSLLNSLNEQRGHGLFCDVTVIVEDRKFRAHKNILSASSTYFH 58

>2ppi_A Gigaxonin; BTB domain, protein degradation, structural genomics, struct genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} Length = 144

 Score = 60.0 bits (146), Expect = 5e-13
 Identities = 12/56 (21%), Positives = 22/56 (39%)

Query: 43 KMDQQFRLKWNNHCNTLLQVFGNLLKTETLVDCTIGADGQYLKAHKVVVSACSPYF 98
             Q   +    H   LL+   +  +     D  +  DG+ +   K +++A SPY 
Sbjct: 18 LYFQSMAVSDPQHAARLLRALSSFREESRFCDAHLVLDGEEIPVQKNILAAASPYI 73

>3ga1_A Nucleus accumbens-associated protein 1; BTB/POZ domain, phosphoprotein, repressor, transcri transcription regulation; 2.10A {Homo sapiens} Length = 129

 Score = 59.2 bits (144), Expect = 7e-13
 Identities = 14/59 (23%), Positives = 27/59 (45%)

Query: 41 SMKMDQQFRLKWNNHCNTLLQVFGNLLKTETLVDCTIGADGQYLKAHKVVVSACSPYFQ 99
           +   Q  +++  N  N++L+            D ++   G   KAH+ V++A S YF+
Sbjct: 2  PLGSAQTLQMEIPNFGNSILECLNEQRLQGLYCDVSVVVKGHAFKAHRAVLAASSSYFR 60

>1r29_A B-cell lymphoma 6 protein; BTB domain, transcriptional repression, transcription; 1.30A {Homo sapiens} SCOP: d.42.1.1 PDB: 1r28_A 1r2b_A 3bim_A 3lbz_A* 3e4u_A Length = 127

 Score = 59.2 bits (144), Expect = 7e-13
 Identities = 14/51 (27%), Positives = 24/51 (47%)

Query: 48 FRLKWNNHCNTLLQVFGNLLKTETLVDCTIGADGQYLKAHKVVVSACSPYF 98
           ++++  H + +L     L   + L D  I    +  +AHK V+ ACS  F
Sbjct: 5  SQIQFTRHASDVLLNLNRLRSRDILTDVVIVVSREQFRAHKTVLMACSGLF 55

>2ihc_A Transcription regulator protein BACH1; BRIC-A-BRAC domain,transcription factor, protein-PROT interaction; 2.44A {Homo sapiens} Length = 124

 Score = 58.8 bits (143), Expect = 1e-12
 Identities = 18/51 (35%), Positives = 28/51 (54%)

Query: 48 FRLKWNNHCNTLLQVFGNLLKTETLVDCTIGADGQYLKAHKVVVSACSPYF 98
          F  + + H   +L    +  K + L D TI  +GQ  +AH+ V++ACS YF
Sbjct: 5  FAYESSVHSTNVLLSLNDQRKKDVLCDVTIFVEGQRFRAHRSVLAACSSYF 55

>3ohu_A Transcription regulator protein BACH2; BTB/POZ domain; 2.10A {Homo sapiens} PDB: 3ohv_A Length = 125

 Score = 58.4 bits (142), Expect = 2e-12
 Identities = 15/54 (27%), Positives = 27/54 (50%)

Query: 46 QQFRLKWNNHCNTLLQVFGNLLKTETLVDCTIGADGQYLKAHKVVVSACSPYFQ 99
            +  +   HC  +L    +  K + L D T+  + +  +AH+ V++ACS YF 
Sbjct: 6  PMYVYESTVHCTNILLGLNDQRKKDILCDVTLIVERKEFRAHRAVLAACSEYFW 59

>2vpk_A Myoneurin; transcription regulation, transcription, metal-binding, alternative splicing, zinc, nucleus, BTB domain, zinc-finger, DNA-binding; 2.00A {Homo sapiens} Length = 116

 Score = 58.0 bits (141), Expect = 2e-12
 Identities = 16/47 (34%), Positives = 24/47 (51%)

Query: 53 NNHCNTLLQVFGNLLKTETLVDCTIGADGQYLKAHKVVVSACSPYFQ 99
          ++HC  LL+      +   L DCTI       KAH+ V+++ S YF 
Sbjct: 3  SHHCEHLLERLNKQREAGFLCDCTIVIGEFQFKAHRNVLASFSEYFG 49

>2yy9_A Zinc finger and BTB domain-containing protein 48; mouse, HKR3, structural genomics, NPPSFA; 2.60A {Mus musculus} Length = 135

 Score = 57.6 bits (140), Expect = 3e-12
 Identities = 14/47 (29%), Positives = 21/47 (44%)

Query: 53 NNHCNTLLQVFGNLLKTETLVDCTIGADGQYLKAHKVVVSACSPYFQ 99
          + H   +LQ      +     D T+   G   KAH  V++ CS +FQ
Sbjct: 6  SGHSVRVLQELNKQREKGQYCDATLDVGGLVFKAHWSVLACCSHFFQ 52

>2if5_A Zinc finger and BTB domain-containing protein 7A; POZ domain, POK, proto oncogene, transcription F transcription; 2.00A {Homo sapiens} PDB: 2nn2_A Length = 120

 Score = 56.8 bits (138), Expect = 4e-12
 Identities = 13/49 (26%), Positives = 23/49 (46%)

Query: 50 LKWNNHCNTLLQVFGNLLKTETLVDCTIGADGQYLKAHKVVVSACSPYF 98
          + + +H + +L           L D  I  +G+    H+ V++ACS YF
Sbjct: 3  IPFPDHSSDILSGLNEQRTQGLLCDVVILVEGREFPTHRSVLAACSQYF 51

>3b84_A Zinc finger and BTB domain-containing protein 48; krueppel related zinc finger protein 3, HKR3, ZBTB48, Z finger, oncogene; 1.74A {Homo sapiens} Length = 119

 Score = 56.1 bits (136), Expect = 1e-11
 Identities = 14/48 (29%), Positives = 21/48 (43%)

Query: 52 WNNHCNTLLQVFGNLLKTETLVDCTIGADGQYLKAHKVVVSACSPYFQ 99
          +  H   +LQ      +     D T+   G   KAH  V++ CS +FQ
Sbjct: 4  FVQHSVRVLQELNKQREKGQYCDATLDVGGLVFKAHWSVLACCSHFFQ 51

>1buo_A POZ domain, protein (promyelocytic leukemia zinc finger prote; protein-protein interaction domain, transcriptional represso finger protein; 1.90A {Homo sapiens} SCOP: d.42.1.1 PDB: 1cs3_A Length = 121

 Score = 56.1 bits (136), Expect = 1e-11
 Identities = 14/47 (29%), Positives = 20/47 (42%)

Query: 53 NNHCNTLLQVFGNLLKTETLVDCTIGADGQYLKAHKVVVSACSPYFQ 99
           +H   LL     +    TL D  I  D Q   AH+ V++  S  F+
Sbjct: 9  PSHPTGLLCKANQMRLAGTLCDVVIMVDSQEFHAHRTVLACTSKMFE 55

>2q81_A MIZ-1 protein; BTB/POZ domain, transcription; HET: PG4; 2.10A {Homo sapiens} PDB: 3m52_A Length = 119

 Score = 55.3 bits (134), Expect = 2e-11
 Identities = 18/46 (39%), Positives = 25/46 (54%)

Query: 54 NHCNTLLQVFGNLLKTETLVDCTIGADGQYLKAHKVVVSACSPYFQ 99
           H   +L+      +   L DCT   DG + KAHK V++ACS YF+
Sbjct: 9  QHSQHVLEQLNQQRQLGLLCDCTFVVDGVHFKAHKAVLAACSEYFK 54

>3hve_A Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, disease mutation, kelch repeat, neurodegeneration, phosphoprotein, polymorphism, UBL conjugation; 2.80A {Homo sapiens} PDB: 3hve_B Length = 256

 Score = 56.4 bits (137), Expect = 5e-11
 Identities = 11/46 (23%), Positives = 20/46 (43%)

Query: 53 NNHCNTLLQVFGNLLKTETLVDCTIGADGQYLKAHKVVVSACSPYF 98
            H   LL+   +  +     D  +  DG+ +   K +++A SPY 
Sbjct: 12 PQHAARLLRALSSFREESRFCDAHLVLDGEEIPVQKNILAAASPYI 57

>4eoz_A Speckle-type POZ protein; E3 ubiquitin ligase, nucleus, protein binding; 2.40A {Homo sapiens} Length = 145

 Score = 52.2 bits (126), Expect = 5e-10
 Identities = 14/41 (34%), Positives = 20/41 (48%)

Query: 58 TLLQVFGNLLKTETLVDCTIGADGQYLKAHKVVVSACSPYF 98
           L    G L +     DC +   GQ  +AHK +++A SP F
Sbjct: 11 RLADELGGLWENSRFTDCCLCVAGQEFQAHKAILAARSPVF 51

>3htm_A Speckle-type POZ protein; BTB, SPOP, ubiquitin, ligase, nucleus, UBL conjugation pathway, protein binding; 2.50A {Homo sapiens} Length = 172

 Score = 52.6 bits (127), Expect = 6e-10
 Identities = 14/41 (34%), Positives = 20/41 (48%)

Query: 58 TLLQVFGNLLKTETLVDCTIGADGQYLKAHKVVVSACSPYF 98
           L    G L +     DC +   GQ  +AHK +++A SP F
Sbjct: 20 RLADELGGLWENSRFTDCCLCVAGQEFQAHKAILAARSPVF 60

>3i3n_A Kelch-like protein 11; structural genomics, BTB, KLHL11A, SGC, structural genomics consortium, kelch repeat, secreted, protein binding; 2.60A {Homo sapiens} Length = 279

 Score = 53.4 bits (129), Expect = 7e-10
 Identities = 14/51 (27%), Positives = 26/51 (50%), Gaps = 3/51 (5%)

Query: 51 KWNNHCNTLLQVFGNLLKTETLVDCTI---GADGQYLKAHKVVVSACSPYF 98
          + ++HC+ L        +     D T+   GA G+  +AH+ V++A + YF
Sbjct: 11 ECSSHCSELSWRQNEQRRQGLFCDITLCFGGAGGREFRAHRSVLAAATEYF 61

>3m5b_A Zinc finger and BTB domain-containing protein 32; POZ domain, BTB/POZ domain, ZBTB32, zinc finger domain-containing protein 32; 2.00A {Homo sapiens} Length = 119

 Score = 48.4 bits (116), Expect = 9e-09
 Identities = 10/46 (21%), Positives = 15/46 (32%), Gaps = 2/46 (4%)

Query: 54 NHCNTLLQVFGNLLKTETLVDCTIGADGQYLKAHKVVVSACSPYFQ 99
             + L+Q          L D  I    Q   AH +V++  S    
Sbjct: 14 YGSDRLVQ--LAARLRPALCDTLITVGSQEFPAHSLVLAGVSQQLG 57

>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A Length = 312

 Score = 48.0 bits (114), Expect = 5e-08
 Identities = 14/41 (34%), Positives = 20/41 (48%)

Query: 59  LLQVFGNLLKTETLVDCTIGADGQYLKAHKVVVSACSPYFQ 99
           L    G L +     DC +   GQ  +AHK +++A SP F 
Sbjct: 161 LADELGGLWENSRFTDCCLCVAGQEFQAHKAILAARSPVFS 201

>2vkp_A BTB/POZ domain-containing protein 6; protein-binding; 1.9A {Homo sapiens} Length = 109

 Score = 44.1 bits (105), Expect = 4e-07
 Identities = 8/38 (21%), Positives = 15/38 (39%), Gaps = 4/38 (10%)

Query: 65 NLLKTETLVDCTI----GADGQYLKAHKVVVSACSPYF 98
          ++   E + D           + + AHK V++  S  F
Sbjct: 1  SMFNNELMADVHFVVGPPGATRTVPAHKYVLAVGSSVF 38

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	110
2z8h_A	138	Transcription regulator protein BACH1; BTB, POZ, d	99.69
2ihc_A	124	Transcription regulator protein BACH1; BRIC-A-BRAC	99.68
3fkc_A	116	Transcriptional regulator kaiso; zinc finger and B	99.67
3ohu_A	125	Transcription regulator protein BACH2; BTB/POZ dom	99.66
1r29_A	127	B-cell lymphoma 6 protein; BTB domain, transcripti	99.64
3b84_A	119	Zinc finger and BTB domain-containing protein 48;	99.64
3ga1_A	129	Nucleus accumbens-associated protein 1; BTB/POZ do	99.64
1buo_A	121	POZ domain, protein (promyelocytic leukemia zinc f	99.63
2if5_A	120	Zinc finger and BTB domain-containing protein 7A;	99.63
2ppi_A	144	Gigaxonin; BTB domain, protein degradation, struct	99.61
2yy9_A	135	Zinc finger and BTB domain-containing protein 48;	99.6
2q81_A	119	MIZ-1 protein; BTB/POZ domain, transcription; HET:	99.59
2vpk_A	116	Myoneurin; transcription regulation, transcription	99.58
3hve_A	256	Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, dis	99.56
3i3n_A	279	Kelch-like protein 11; structural genomics, BTB, K	99.52
3htm_A	172	Speckle-type POZ protein; BTB, SPOP, ubiquitin, li	99.39
4eoz_A	145	Speckle-type POZ protein; E3 ubiquitin ligase, nuc	99.36
2vkp_A	109	BTB/POZ domain-containing protein 6; protein-bindi	99.33
3m5b_A	119	Zinc finger and BTB domain-containing protein 32;	99.3
3hqi_A	312	Speckle-type POZ protein; SPOP, ubiquitin, puckere	99.18
4ajy_C	97	Transcription elongation factor B polypeptide 1; E	97.54
2ast_A	159	S-phase kinase-associated protein 1A; SCF-substrat	96.98
1fs1_B	141	SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, le	94.82
1hv2_A	99	Elongin C, ELC1; protein-peptide complex, signalin	91.62
2fnj_C	96	Transcription elongation factor B polypeptide 1; b	91.59
2p1m_A	160	SKP1-like protein 1A; F-BOX, leucine rich repeat,	91.54

>2z8h_A Transcription regulator protein BACH1; BTB, POZ, disulfide bond, activator, DNA-binding, nucleus, phosphorylation, repressor; 2.50A {Mus musculus}

Probab=99.69  E-value=1e-17  Score=115.28  Aligned_cols=66  Identities=27%  Similarity=0.414  Sum_probs=61.0

Q ss_pred             ccccCceeEeecCCcHHHHHHHHHhhhcCCCcceEEEEeCCeEEEeEEEeeccCCHHHHHhhCCCC
Q psy1854          41 SMKMDQQFRLKWNNHCNTLLQVFGNLLKTETLVDCTIGADGQYLKAHKVVVSACSPYFQVSWDVVF  106 (110)
Q Consensus        41 ~~~~~~~~~~~~~~h~~~~l~~l~~lr~~~~~~DV~l~v~g~~f~aHk~VLAa~S~yFr~mf~~~p  106 (110)
                      +.+....+.++|+.|...+++.|+++|+++.+|||+|.++|+.|+|||.|||++|+||++||.+.+
T Consensus         5 ~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~~f~~~~   70 (138)
T 2z8h_A            5 SVSESAVFAYESSVHSTNVLLSLNDQRKKDVLCDVTVLVEGQRFRAHRSVLAACSSYFHSRIVGQT   70 (138)
T ss_dssp             CCCTTCCCCCCCSSHHHHHHHHHHHHHHHTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHTTCC
T ss_pred             CCCCCCeeEecCCchHHHHHHHHHHHHhhCCCcCeEEEECCEEEechHHHHHHcCHHHHHHHhcCC
Confidence            334457888999999999999999999999999999999999999999999999999999999865

>2ihc_A Transcription regulator protein BACH1; BRIC-A-BRAC domain,transcription factor, protein-PROT interaction; 2.44A {Homo sapiens}

Probab=99.68  E-value=1.7e-17  Score=112.29  Aligned_cols=61  Identities=30%  Similarity=0.436  Sum_probs=58.0

Q ss_pred             ceeEeecCCcHHHHHHHHHhhhcCCCcceEEEEeCCeEEEeEEEeeccCCHHHHHhhCCCC
Q psy1854          46 QQFRLKWNNHCNTLLQVFGNLLKTETLVDCTIGADGQYLKAHKVVVSACSPYFQVSWDVVF  106 (110)
Q Consensus        46 ~~~~~~~~~h~~~~l~~l~~lr~~~~~~DV~l~v~g~~f~aHk~VLAa~S~yFr~mf~~~p  106 (110)
                      +.+.++|+.|...+++.++++|+++.+|||+|.++|+.|+|||.|||++|+||++||.+++
T Consensus         3 ~~~~~~~~~~~~~l~~~l~~l~~~~~~~Dv~l~v~~~~~~aHk~vLaa~S~yF~~mf~~~~   63 (124)
T 2ihc_A            3 SVFAYESSVHSTNVLLSLNDQRKKDVLCDVTIFVEGQRFRAHRSVLAACSSYFHSRIVGQA   63 (124)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHHHTCSCCEEEEETTEEEEECHHHHHHHBHHHHHHHTTC-
T ss_pred             ceeeecCcchHHHHHHHHHHHHhcCCCcCEEEEECCEEEecHHHHHHHcCHHHHHHHcCCC
Confidence            5788999999999999999999999999999999999999999999999999999999864

>3fkc_A Transcriptional regulator kaiso; zinc finger and BTB domain containing 33, kaiso transcriptio ZNF-kaiso, ZNF348,wugsc:H_DJ525N14.1; 1.70A {Homo sapiens} PDB: 3m4t_A 3m8v_A

Probab=99.67  E-value=1.9e-17  Score=111.42  Aligned_cols=63  Identities=21%  Similarity=0.274  Sum_probs=58.4

Q ss_pred             ccCceeEeecCCcHHHHHHHHHhhhcCCCcceEEEEeCCeEEEeEEEeeccCCHHHHHhhCCC
Q psy1854          43 KMDQQFRLKWNNHCNTLLQVFGNLLKTETLVDCTIGADGQYLKAHKVVVSACSPYFQVSWDVV  105 (110)
Q Consensus        43 ~~~~~~~~~~~~h~~~~l~~l~~lr~~~~~~DV~l~v~g~~f~aHk~VLAa~S~yFr~mf~~~  105 (110)
                      ++.+.+.+.+++|...+++.++++|+++.+|||+|.++|+.|+|||.|||++|+||++||.++
T Consensus         2 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~~F~~~f~~~   64 (116)
T 3fkc_A            2 ESRKLISATDIQYSGSLLNSLNEQRGHGLFCDVTVIVEDRKFRAHKNILSASSTYFHQLFSVA   64 (116)
T ss_dssp             --CCCCCCCCTTHHHHHHHHHHHHHHHTTTCCEEEEETTEEEEECHHHHHHHCHHHHHHTTSC
T ss_pred             CcCceeeecCccHHHHHHHHHHHHHhcCCceeEEEEECCEEEehhHHHHHHcCHHHHHHHcCC
Confidence            456788899999999999999999999999999999999999999999999999999999875

>3ohu_A Transcription regulator protein BACH2; BTB/POZ domain; 2.10A {Homo sapiens} SCOP: d.42.1.0 PDB: 3ohv_A

Probab=99.66  E-value=4.7e-17  Score=109.80  Aligned_cols=62  Identities=24%  Similarity=0.400  Sum_probs=58.8

Q ss_pred             CceeEeecCCcHHHHHHHHHhhhcCCCcceEEEEeCCeEEEeEEEeeccCCHHHHHhhCCCC
Q psy1854          45 DQQFRLKWNNHCNTLLQVFGNLLKTETLVDCTIGADGQYLKAHKVVVSACSPYFQVSWDVVF  106 (110)
Q Consensus        45 ~~~~~~~~~~h~~~~l~~l~~lr~~~~~~DV~l~v~g~~f~aHk~VLAa~S~yFr~mf~~~p  106 (110)
                      .....+++..|...+++.|+++|+++.+|||+|.++|+.|+|||.|||++|+||++||.+.+
T Consensus         5 ~~~~~~~~~~~~~~l~~~l~~l~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~~f~~~~   66 (125)
T 3ohu_A            5 SPMYVYESTVHCTNILLGLNDQRKKDILCDVTLIVERKEFRAHRAVLAACSEYFWQALVGQT   66 (125)
T ss_dssp             CCCEEEECSSHHHHHHHHHHHHHHHTCSCCEEEEETTEEEEECHHHHHHHBHHHHHHHTTCC
T ss_pred             CcceeeecHHHHHHHHHHHHHHHhcCCccceEEEECCEEEechHHHHHHcCHHHHHHhcCCC
Confidence            46778999999999999999999999999999999999999999999999999999998865

>1r29_A B-cell lymphoma 6 protein; BTB domain, transcriptional repression, transcription; 1.30A {Homo sapiens} SCOP: d.42.1.1 PDB: 1r28_A 1r2b_A 3bim_A 3lbz_A* 3e4u_A

Probab=99.64  E-value=6.9e-17  Score=109.25  Aligned_cols=61  Identities=23%  Similarity=0.391  Sum_probs=56.4

Q ss_pred             ceeEeecCCcHHHHHHHHHhhhcCCCcceEEEEeCCeEEEeEEEeeccCCHHHHHhhCCCC
Q psy1854          46 QQFRLKWNNHCNTLLQVFGNLLKTETLVDCTIGADGQYLKAHKVVVSACSPYFQVSWDVVF  106 (110)
Q Consensus        46 ~~~~~~~~~h~~~~l~~l~~lr~~~~~~DV~l~v~g~~f~aHk~VLAa~S~yFr~mf~~~p  106 (110)
                      ....++|++|...+++.|+++|+++.+|||+|.++|+.|+|||.|||++|+||++||.+++
T Consensus         3 ~~~~~~~~~~~~~l~~~l~~l~~~~~~~Dv~l~v~~~~~~aHk~iLaa~S~~F~~~f~~~~   63 (127)
T 1r29_A            3 ADSQIQFTRHASDVLLNLNRLRSRDILTDVVIVVSREQFRAHKTVLMACSGLFYSIFTDQL   63 (127)
T ss_dssp             --CCCCCTTHHHHHHHHHHHHHHTTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHTSTT
T ss_pred             CCccccchhHHHHHHHHHHHHHhcCCCCCEEEEECCEEEehHHHHHHHhCHHHHHHhcCCc
Confidence            4556889999999999999999999999999999999999999999999999999999765

>3b84_A Zinc finger and BTB domain-containing protein 48; krueppel related zinc finger protein 3, HKR3, ZBTB48, Z finger, oncogene; 1.74A {Homo sapiens}

Probab=99.64  E-value=3.8e-17  Score=109.88  Aligned_cols=57  Identities=25%  Similarity=0.383  Sum_probs=54.2

Q ss_pred             eecCCcHHHHHHHHHhhhcCCCcceEEEEeCCeEEEeEEEeeccCCHHHHHhhCCCC
Q psy1854          50 LKWNNHCNTLLQVFGNLLKTETLVDCTIGADGQYLKAHKVVVSACSPYFQVSWDVVF  106 (110)
Q Consensus        50 ~~~~~h~~~~l~~l~~lr~~~~~~DV~l~v~g~~f~aHk~VLAa~S~yFr~mf~~~p  106 (110)
                      ++|++|...+++.++++|+++.+|||+|.+||+.|+|||.|||++|+||++||.+++
T Consensus         2 ~~~~~h~~~l~~~l~~l~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~~f~~~~   58 (119)
T 3b84_A            2 MSFVQHSVRVLQELNKQREKGQYCDATLDVGGLVFKAHWSVLACCSHFFQSLYGDGS   58 (119)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHTTTT
T ss_pred             cccchHHHHHHHHHHHHHhcCCCcceEEEECCEEEEeeHHHHhhcCHHHHHHHCCCC
Confidence            567899999999999999999999999999999999999999999999999998764

>3ga1_A Nucleus accumbens-associated protein 1; BTB/POZ domain, phosphoprotein, repressor, transcri transcription regulation; 2.10A {Homo sapiens}

Probab=99.64  E-value=8.6e-17  Score=109.34  Aligned_cols=62  Identities=23%  Similarity=0.380  Sum_probs=57.8

Q ss_pred             cCceeEeecCCcHHHHHHHHHhhhcCCCcceEEEEeCCeEEEeEEEeeccCCHHHHHhhCCC
Q psy1854          44 MDQQFRLKWNNHCNTLLQVFGNLLKTETLVDCTIGADGQYLKAHKVVVSACSPYFQVSWDVV  105 (110)
Q Consensus        44 ~~~~~~~~~~~h~~~~l~~l~~lr~~~~~~DV~l~v~g~~f~aHk~VLAa~S~yFr~mf~~~  105 (110)
                      +.+.+.++|++|...+++.++++|+++.+|||+|.++|+.|+|||.|||++|+||++||.++
T Consensus         5 ~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~Dv~l~v~~~~~~~Hk~vLaa~S~~F~~~f~~~   66 (129)
T 3ga1_A            5 SAQTLQMEIPNFGNSILECLNEQRLQGLYCDVSVVVKGHAFKAHRAVLAASSSYFRDLFNNS   66 (129)
T ss_dssp             --CEEEEECTTHHHHHHHHHHHHHHTTCSCCEEEEETTEEEEECHHHHHHHBHHHHHHHHHC
T ss_pred             CCceEEeecCcHHHHHHHHHHHHHhcCCCcceEEEECCEEEEehHHHHHHcCHHHHHHHcCC
Confidence            45788999999999999999999999999999999999999999999999999999999764

>1buo_A POZ domain, protein (promyelocytic leukemia zinc finger prote; protein-protein interaction domain, transcriptional represso finger protein; 1.90A {Homo sapiens} SCOP: d.42.1.1 PDB: 1cs3_A

Probab=99.63  E-value=6.7e-17  Score=108.83  Aligned_cols=59  Identities=25%  Similarity=0.309  Sum_probs=56.2

Q ss_pred             eeEeecCCcHHHHHHHHHhhhcCCCcceEEEEeCCeEEEeEEEeeccCCHHHHHhhCCC
Q psy1854          47 QFRLKWNNHCNTLLQVFGNLLKTETLVDCTIGADGQYLKAHKVVVSACSPYFQVSWDVV  105 (110)
Q Consensus        47 ~~~~~~~~h~~~~l~~l~~lr~~~~~~DV~l~v~g~~f~aHk~VLAa~S~yFr~mf~~~  105 (110)
                      .+.+++++|...+++.++++|+++.+|||++.++|+.|+|||.|||++|+||++||.++
T Consensus         3 ~~~~~~~~~~~~l~~~l~~l~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~~f~~~   61 (121)
T 1buo_A            3 MIQLQNPSHPTGLLCKANQMRLAGTLCDVVIMVDSQEFHAHRTVLACTSKMFEILFHRN   61 (121)
T ss_dssp             CCCCCCTTHHHHHHHHHHHHHHHTTTCCEEEEESSCEEEECHHHHHHHCHHHHHHTTSC
T ss_pred             ceeccCcchHHHHHHHHHHHHhcCCCCCEEEEECCEEEehhHHHHhhcCHHHHHHHcCC
Confidence            46788999999999999999999999999999999999999999999999999999875

>2if5_A Zinc finger and BTB domain-containing protein 7A; POZ domain, POK, proto oncogene, transcription F transcription; 2.00A {Homo sapiens} PDB: 2nn2_A

Probab=99.63  E-value=8.2e-17  Score=107.74  Aligned_cols=58  Identities=22%  Similarity=0.416  Sum_probs=53.9

Q ss_pred             EeecCCcHHHHHHHHHhhhcCCCcceEEEEeCCeEEEeEEEeeccCCHHHHHhhCCCC
Q psy1854          49 RLKWNNHCNTLLQVFGNLLKTETLVDCTIGADGQYLKAHKVVVSACSPYFQVSWDVVF  106 (110)
Q Consensus        49 ~~~~~~h~~~~l~~l~~lr~~~~~~DV~l~v~g~~f~aHk~VLAa~S~yFr~mf~~~p  106 (110)
                      .++|++|...+++.++++|+++.+|||+|.++|+.|+|||.|||++|+||++||.+++
T Consensus         2 ~~~~~~h~~~l~~~l~~l~~~~~~~Dv~l~v~~~~~~aHk~vLaa~S~~F~~~f~~~~   59 (120)
T 2if5_A            2 GIPFPDHSSDILSGLNEQRTQGLLCDVVILVEGREFPTHRSVLAACSQYFKKLFTSGA   59 (120)
T ss_dssp             CCCCTTHHHHHHHHHHHHHHTTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHHC--
T ss_pred             CcCccchHHHHHHHHHHHHhcCCCCCeEEEECCEEEeHHHHHHHHhCHHHHHHhcCCc
Confidence            4678999999999999999999999999999999999999999999999999998754

>2ppi_A Gigaxonin; BTB domain, protein degradation, structural genomics, struct genomics consortium, SGC, structural protein; 2.40A {Homo sapiens}

Probab=99.61  E-value=1.5e-16  Score=110.69  Aligned_cols=61  Identities=20%  Similarity=0.349  Sum_probs=55.8

Q ss_pred             ceeEeecCCcHHHHHHHHHhhhcCCCcceEEEEeCCeEEEeEEEeeccCCHHHHHhhCCCC
Q psy1854          46 QQFRLKWNNHCNTLLQVFGNLLKTETLVDCTIGADGQYLKAHKVVVSACSPYFQVSWDVVF  106 (110)
Q Consensus        46 ~~~~~~~~~h~~~~l~~l~~lr~~~~~~DV~l~v~g~~f~aHk~VLAa~S~yFr~mf~~~p  106 (110)
                      +.+.+.+++|...+++.|+++|+++.+|||+|.++|+.|+|||.|||++|+||++||.+++
T Consensus        21 ~~~~~~~~~h~~~l~~~l~~l~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~mf~~~~   81 (144)
T 2ppi_A           21 QSMAVSDPQHAARLLRALSSFREESRFCDAHLVLDGEEIPVQKNILAAASPYIRTKLNYNP   81 (144)
T ss_dssp             CCCCCCCTTHHHHHHHHHHHTTC--CCCCEEEEETTEEEEECHHHHHHHCHHHHHHHHHCC
T ss_pred             eeeeecCcchHHHHHHHHHHHHhcCCCcceEEEECCEEEehHHHHHHHcCHHHHHHHcCCC
Confidence            5678899999999999999999999999999999999999999999999999999998754

>2yy9_A Zinc finger and BTB domain-containing protein 48; mouse, HKR3, structural genomics, NPPSFA; 2.60A {Mus musculus}

Probab=99.60  E-value=3.3e-16  Score=107.63  Aligned_cols=56  Identities=25%  Similarity=0.341  Sum_probs=49.4

Q ss_pred             ecCCcHHHHHHHHHhhhcCCCcceEEEEeCCeEEEeEEEeeccCCHHHHHhhCCCC
Q psy1854          51 KWNNHCNTLLQVFGNLLKTETLVDCTIGADGQYLKAHKVVVSACSPYFQVSWDVVF  106 (110)
Q Consensus        51 ~~~~h~~~~l~~l~~lr~~~~~~DV~l~v~g~~f~aHk~VLAa~S~yFr~mf~~~p  106 (110)
                      .+.+|...+++.|+++|+++.+|||+|.++|+.|+|||.|||++|+||++||.+++
T Consensus         4 ~~~~h~~~l~~~l~~l~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~mf~~~~   59 (135)
T 2yy9_A            4 GSSGHSVRVLQELNKQREKGQYCDATLDVGGLVFKAHWSVLACCSHFFQRIYGDGT   59 (135)
T ss_dssp             ---CHHHHHHHHHHHHHHTTTTCCEEEEETTEEEEECHHHHHHHCHHHHHTCC---
T ss_pred             ccccHHHHHHHHHHHHHhcCCCcceEEEECCEEEehHHHHHHHhCHHHHHHHcCCC
Confidence            45789999999999999999999999999999999999999999999999998754

>2q81_A MIZ-1 protein; BTB/POZ domain, transcription; HET: PG4; 2.10A {Homo sapiens} PDB: 3m52_A

Probab=99.59  E-value=1.5e-16  Score=106.90  Aligned_cols=58  Identities=31%  Similarity=0.528  Sum_probs=53.0

Q ss_pred             eEeecCCcHHHHHHHHHhhhcCCCcceEEEEeCCeEEEeEEEeeccCCHHHHHhhCCC
Q psy1854          48 FRLKWNNHCNTLLQVFGNLLKTETLVDCTIGADGQYLKAHKVVVSACSPYFQVSWDVV  105 (110)
Q Consensus        48 ~~~~~~~h~~~~l~~l~~lr~~~~~~DV~l~v~g~~f~aHk~VLAa~S~yFr~mf~~~  105 (110)
                      ..+.+++|...+++.++++|+++.+|||+|.++|+.|+|||.|||++|+||++||++.
T Consensus         3 ~~~~~~~h~~~l~~~l~~l~~~~~~~Dv~l~v~~~~~~aHk~vLaa~S~yF~~~f~~~   60 (119)
T 2q81_A            3 LGSDFPQHSQHVLEQLNQQRQLGLLCDCTFVVDGVHFKAHKAVLAACSEYFKMLFVDQ   60 (119)
T ss_dssp             --CCHHHHHHHHHHHHHHHHHHTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHHHC
T ss_pred             cccccchHHHHHHHHHHHHHhcCCCcceEEEECCEEEehhHHHHHHcCHHHHHHHcCC
Confidence            4466788999999999999999999999999999999999999999999999999763

>2vpk_A Myoneurin; transcription regulation, transcription, metal-binding, alternative splicing, zinc, nucleus, BTB domain, zinc-finger, DNA-binding; 2.00A {Homo sapiens}

Probab=99.58  E-value=3.9e-16  Score=104.03  Aligned_cols=54  Identities=30%  Similarity=0.495  Sum_probs=51.1

Q ss_pred             cCCcHHHHHHHHHhhhcCCCcceEEEEeCCeEEEeEEEeeccCCHHHHHhhCCC
Q psy1854          52 WNNHCNTLLQVFGNLLKTETLVDCTIGADGQYLKAHKVVVSACSPYFQVSWDVV  105 (110)
Q Consensus        52 ~~~h~~~~l~~l~~lr~~~~~~DV~l~v~g~~f~aHk~VLAa~S~yFr~mf~~~  105 (110)
                      +++|...+++.++++|+++.+|||+|.++|+.|+|||.|||++|+||++||.+.
T Consensus         2 ~~~h~~~l~~~l~~l~~~~~~~Dv~l~v~~~~~~aHk~vLaa~S~yF~~~f~~~   55 (116)
T 2vpk_A            2 MSHHCEHLLERLNKQREAGFLCDCTIVIGEFQFKAHRNVLASFSEYFGAIYRST   55 (116)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHTTC
T ss_pred             chhHHHHHHHHHHHHHhcCCCCcEEEEECCEEEeccHHHHhhcCHHHHHHHcCC
Confidence            357899999999999999999999999999999999999999999999999874

>3hve_A Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, disease mutation, kelch repeat, neurodegeneration, phosphoprotein, polymorphism, UBL conjugation; 2.80A {Homo sapiens} PDB: 3hve_B

Probab=99.56  E-value=9.6e-16  Score=114.19  Aligned_cols=62  Identities=18%  Similarity=0.307  Sum_probs=49.5

Q ss_pred             CceeEeecCCcHHHHHHHHHhhhcCCCcceEEEEeCCeEEEeEEEeeccCCHHHHHhhCCCC
Q psy1854          45 DQQFRLKWNNHCNTLLQVFGNLLKTETLVDCTIGADGQYLKAHKVVVSACSPYFQVSWDVVF  106 (110)
Q Consensus        45 ~~~~~~~~~~h~~~~l~~l~~lr~~~~~~DV~l~v~g~~f~aHk~VLAa~S~yFr~mf~~~p  106 (110)
                      +....+.++.|...+++.++.+|+++.+|||+|.+||+.|+|||.|||++|+||++||++++
T Consensus         4 ~~~~~~~~~~~~~~l~~~l~~l~~~~~~~Dv~l~v~~~~f~~Hr~vLaa~S~yF~~mf~~~~   65 (256)
T 3hve_A            4 AEGSAVSDPQHAARLLRALSSFREESRFCDAHLVLDGEEIPVQKNILAAASPYIRTKLNYNP   65 (256)
T ss_dssp             ------CCTTTHHHHHHHHHTCCC--CCCCEEEEETTEEEEECHHHHHTTCHHHHHTC----
T ss_pred             CCCCccCChHHHHHHHHHHHHHHhcCCCcceEEEECCEEEechHHHHHHcCHHHHHHhCCCC
Confidence            45577889999999999999999999999999999999999999999999999999998765

>3i3n_A Kelch-like protein 11; structural genomics, BTB, KLHL11A, SGC, structural genomics consortium, kelch repeat, secreted, protein binding; 2.60A {Homo sapiens} PDB: 4ap2_A* 4apf_A

Probab=99.52  E-value=3e-15  Score=112.89  Aligned_cols=61  Identities=21%  Similarity=0.342  Sum_probs=55.7

Q ss_pred             ceeEeecCCcHHHHHHHHHhhhcCCCcceEEEEeC---CeEEEeEEEeeccCCHHHHHhhCCCC
Q psy1854          46 QQFRLKWNNHCNTLLQVFGNLLKTETLVDCTIGAD---GQYLKAHKVVVSACSPYFQVSWDVVF  106 (110)
Q Consensus        46 ~~~~~~~~~h~~~~l~~l~~lr~~~~~~DV~l~v~---g~~f~aHk~VLAa~S~yFr~mf~~~p  106 (110)
                      ....|.+++|...+++.++++|+++.+|||+|.+|   |+.|+|||.|||++|+||++||++++
T Consensus         6 ~~~~~~~~~h~~~ll~~l~~l~~~~~~~Dv~l~v~~~~~~~f~~Hr~vLaa~S~yF~~mf~~~~   69 (279)
T 3i3n_A            6 EAEDFECSSHCSELSWRQNEQRRQGLFCDITLCFGGAGGREFRAHRSVLAAATEYFTPLLSGQF   69 (279)
T ss_dssp             CEEEEECTTHHHHHHHHHHHHHHHTTTCCEEEECC----CEEEECHHHHHHHCTTSGGGCCC--
T ss_pred             cccCcCCHhHHHHHHHHHHHHHhcCCCCCeEEEEcCCCCeEEehHHHHHHHcCHHHHHHhcCCC
Confidence            46789999999999999999999999999999998   99999999999999999999998764

>3htm_A Speckle-type POZ protein; BTB, SPOP, ubiquitin, ligase, nucleus, UBL conjugation pathway, protein binding; 2.50A {Homo sapiens}

Probab=99.39  E-value=4.4e-14  Score=98.75  Aligned_cols=55  Identities=25%  Similarity=0.429  Sum_probs=49.8

Q ss_pred             cCCcHHHHHHHHHhhhcCCCcceEEEEeCCeEEEeEEEeeccCCHHHHHhhCCCC
Q psy1854          52 WNNHCNTLLQVFGNLLKTETLVDCTIGADGQYLKAHKVVVSACSPYFQVSWDVVF  106 (110)
Q Consensus        52 ~~~h~~~~l~~l~~lr~~~~~~DV~l~v~g~~f~aHk~VLAa~S~yFr~mf~~~p  106 (110)
                      +..+...+...+.++++++.+|||+|.++|+.|+|||.|||++|+||++||.+++
T Consensus        14 ~~~p~~~l~~~l~~l~~~~~~~Dv~l~v~~~~~~~Hk~iL~~~S~~F~~~f~~~~   68 (172)
T 3htm_A           14 VKVPECRLADELGGLWENSRFTDCCLCVAGQEFQAHKAILAARSPVFSAMFEHEM   68 (172)
T ss_dssp             SCCCCCCHHHHHHHHHHHTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHHSCC
T ss_pred             CCCCHHHHHHHHHHHHhCCCCcceEEEECCEEEEeeHHHHHHcCHHHHHHHccCc
Confidence            3455667889999999999999999999999999999999999999999998753

>4eoz_A Speckle-type POZ protein; E3 ubiquitin ligase, nucleus, protein binding; 2.40A {Homo sapiens}

Probab=99.36  E-value=1.7e-13  Score=93.35  Aligned_cols=51  Identities=27%  Similarity=0.496  Sum_probs=47.0

Q ss_pred             HHHHHHHHHhhhcCCCcceEEEEeCCeEEEeEEEeeccCCHHHHHhhCCCC
Q psy1854          56 CNTLLQVFGNLLKTETLVDCTIGADGQYLKAHKVVVSACSPYFQVSWDVVF  106 (110)
Q Consensus        56 ~~~~l~~l~~lr~~~~~~DV~l~v~g~~f~aHk~VLAa~S~yFr~mf~~~p  106 (110)
                      ...+...++++++++.+|||+|.++|+.|+|||.||+++|+||++||.+++
T Consensus         9 ~~~l~~~l~~l~~~~~~~Dv~l~v~~~~~~~Hk~iL~~~S~~F~~~f~~~~   59 (145)
T 4eoz_A            9 ECRLADELGGLWENSRFTDCCLCVAGQEFQAHKAILAARSPVFSAMFEHEM   59 (145)
T ss_dssp             CCCHHHHHHHHHHHTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHHSSS
T ss_pred             hHHHHHHHHHHHhCCCCcceEEEECCEEEEeehHHHHHcCHHHHHHHcCCC
Confidence            346788999999999999999999999999999999999999999998753

>2vkp_A BTB/POZ domain-containing protein 6; protein-binding; 1.9A {Homo sapiens}

Probab=99.33  E-value=1.9e-13  Score=89.52  Aligned_cols=42  Identities=19%  Similarity=0.245  Sum_probs=36.9

Q ss_pred             hhhcCCCcceEEEEeCC----eEEEeEEEeeccCCHHHHHhhCCCC
Q psy1854          65 NLLKTETLVDCTIGADG----QYLKAHKVVVSACSPYFQVSWDVVF  106 (110)
Q Consensus        65 ~lr~~~~~~DV~l~v~g----~~f~aHk~VLAa~S~yFr~mf~~~p  106 (110)
                      ++++++.+|||+|.++|    +.|+|||.|||++|+||++||.+++
T Consensus         1 ~l~~~~~~~Dv~l~v~~~~~~~~~~~Hk~iLa~~S~~F~~~f~~~~   46 (109)
T 2vkp_A            1 SMFNNELMADVHFVVGPPGATRTVPAHKYVLAVGSSVFYAMFYGDL   46 (109)
T ss_dssp             CCTTCCTTCCEEEEESSTTSCEEEEECHHHHHHHCHHHHHHHC---
T ss_pred             CcccCCCcccEEEEECCCCCcEEEEeeHHHHHHcCHHHHHHhcCCc
Confidence            36789999999999988    8999999999999999999998764

>3m5b_A Zinc finger and BTB domain-containing protein 32; POZ domain, BTB/POZ domain, ZBTB32, zinc finger domain-containing protein 32; 2.00A {Homo sapiens} SCOP: d.42.1.0

Probab=99.30  E-value=6.1e-13  Score=89.99  Aligned_cols=52  Identities=23%  Similarity=0.234  Sum_probs=44.5

Q ss_pred             eeEeecCCcHHHHHHHHHhhhcCCCcceEEEEeCCeEEEeEEEeeccCCHHHHH
Q psy1854          47 QFRLKWNNHCNTLLQVFGNLLKTETLVDCTIGADGQYLKAHKVVVSACSPYFQV  100 (110)
Q Consensus        47 ~~~~~~~~h~~~~l~~l~~lr~~~~~~DV~l~v~g~~f~aHk~VLAa~S~yFr~  100 (110)
                      ......+.+...+++.++  |.++.+|||+|.++|+.|+|||.|||++|+||++
T Consensus         7 p~~~~~~~~~~~~l~~l~--r~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~   58 (119)
T 3m5b_A            7 PIRLPSPYGSDRLVQLAA--RLRPALCDTLITVGSQEFPAHSLVLAGVSQQLGR   58 (119)
T ss_dssp             CEEECCTTTTCHHHHHHH--HHTTTTCCEEEEETTEEEEECHHHHHTTCGGGCC
T ss_pred             CCCCCCCcchHHHHHHHH--HhcCCCcceEEEECCEEEeeEHHHHHHcCHHHhc
Confidence            344455567778888886  7789999999999999999999999999999985

>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A

Probab=99.18  E-value=8.2e-12  Score=95.05  Aligned_cols=50  Identities=28%  Similarity=0.525  Sum_probs=45.4

Q ss_pred             HHHHHHHHhhhcCCCcceEEEEeCCeEEEeEEEeeccCCHHHHHhhCCCC
Q psy1854          57 NTLLQVFGNLLKTETLVDCTIGADGQYLKAHKVVVSACSPYFQVSWDVVF  106 (110)
Q Consensus        57 ~~~l~~l~~lr~~~~~~DV~l~v~g~~f~aHk~VLAa~S~yFr~mf~~~p  106 (110)
                      ..+.+.+..+++++.++||+|.++|+.|+|||.|||++|+||++||.+.+
T Consensus       159 ~~l~~~l~~l~~~~~~~Dv~l~v~~~~f~~Hk~vLaa~S~~F~~~f~~~~  208 (312)
T 3hqi_A          159 CRLADELGGLWENSRFTDCCLCVAGQEFQAHKAILAARSPVFSAMFEHEM  208 (312)
T ss_dssp             CCHHHHHHHHHHTTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHTTC--
T ss_pred             chHHHHHHHHHhCCCCCceEEEECCEEEeHHHHHHHHcCHHHHHHhccCc
Confidence            35788899999999999999999999999999999999999999998753

>4ajy_C Transcription elongation factor B polypeptide 1; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 2izv_C 3dcg_B 3zrc_B* 3zrf_B 3ztc_B* 3ztd_B* 3zun_B* 2c9w_C 4awj_B* 4b95_B* 4b9k_B* 2fnj_C 1lqb_B 1lm8_C 2jz3_C 2xai_B 4b9k_E*

Probab=97.54  E-value=3.1e-05  Score=50.22  Aligned_cols=29  Identities=10%  Similarity=0.054  Sum_probs=26.1

Q ss_pred             EEEEe-CCeEEEeEEEeeccCCHHHHHhhCC
Q psy1854          75 CTIGA-DGQYLKAHKVVVSACSPYFQVSWDV  104 (110)
Q Consensus        75 V~l~v-~g~~f~aHk~VLAa~S~yFr~mf~~  104 (110)
                      |+|+. +|+.|.+||.| |++|+||++||.+
T Consensus         4 v~L~SsDg~~F~v~r~v-A~~S~~ik~m~~~   33 (97)
T 4ajy_C            4 VKLISSDGHEFIVKREH-ALTSGTIKAMLSG   33 (97)
T ss_dssp             EEEECTTCCEEEEEHHH-HTTSHHHHHHHCC
T ss_pred             EEEEecCCcEEEecHHH-HHHhHHHHHHHHh
Confidence            56765 89999999999 9999999999986

>1fs1_B SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.157.1.1 d.42.1.1 PDB: 1fs2_B 1ldk_D

Probab=94.82  E-value=0.011  Score=40.44  Aligned_cols=29  Identities=10%  Similarity=0.168  Sum_probs=26.1

Q ss_pred             EEEEe-CCeEEEeEEEeeccCCHHHHHhhCC
Q psy1854          75 CTIGA-DGQYLKAHKVVVSACSPYFQVSWDV  104 (110)
Q Consensus        75 V~l~v-~g~~f~aHk~VLAa~S~yFr~mf~~  104 (110)
                      |+|+. +|+.|.+|+.+ |.+|.||++||.+
T Consensus         4 v~L~SsDg~~f~v~~~v-A~~S~~ik~ml~~   33 (141)
T 1fs1_B            4 IKLQSSDGEIFEVDVEI-AKQSVTIKTMLED   33 (141)
T ss_dssp             EEEECTTSCEEEEEGGG-GGTCHHHHHHHHH
T ss_pred             EEEEeCCCCEEEecHHH-HHHhHHHHHHHHh
Confidence            67777 88999999998 8999999999974

>1hv2_A Elongin C, ELC1; protein-peptide complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.42.1.1

Probab=91.62  E-value=0.095  Score=33.81  Aligned_cols=29  Identities=14%  Similarity=0.182  Sum_probs=26.1

Q ss_pred             EEEEe-CCeEEEeEEEeeccCCHHHHHhhCC
Q psy1854          75 CTIGA-DGQYLKAHKVVVSACSPYFQVSWDV  104 (110)
Q Consensus        75 V~l~v-~g~~f~aHk~VLAa~S~yFr~mf~~  104 (110)
                      |+|+. +|+.|.+++.+ |..|.++++||.+
T Consensus         6 v~L~SsDg~~f~V~~~v-A~~S~~ik~ml~~   35 (99)
T 1hv2_A            6 VTLVSKDDKEYEISRSA-AMISPTLKAMIEG   35 (99)
T ss_dssp             EEEEETTTEEEEEEHHH-HTTCHHHHHHHHS
T ss_pred             EEEEecCCCEEEECHHH-HHHhHHHHHHHhc
Confidence            67776 89999999997 9999999999976

>2fnj_C Transcription elongation factor B polypeptide 1; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.42.1.1 PDB: 1lqb_B 1lm8_C 2jz3_C 2xai_B 2c9w_C 2izv_C 3dcg_B 3zrc_B* 3zrf_B

Probab=91.59  E-value=0.071  Score=34.19  Aligned_cols=29  Identities=10%  Similarity=0.054  Sum_probs=25.7

Q ss_pred             EEEEe-CCeEEEeEEEeeccCCHHHHHhhCC
Q psy1854          75 CTIGA-DGQYLKAHKVVVSACSPYFQVSWDV  104 (110)
Q Consensus        75 V~l~v-~g~~f~aHk~VLAa~S~yFr~mf~~  104 (110)
                      |+|+. +|+.|.+++.+ |..|.++++||.+
T Consensus         3 v~L~SsDg~~f~V~~~~-A~~S~~ik~ml~~   32 (96)
T 2fnj_C            3 VKLISSDGHEFIVKREH-ALTSGTIKAMLSG   32 (96)
T ss_dssp             EEEECTTSCEEEEEHHH-HTTSHHHHHHHHC
T ss_pred             EEEEecCCCEEEeCHHH-HHHhHHHHHHHHc
Confidence            66776 89999999997 8999999999975

>2p1m_A SKP1-like protein 1A; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_A* 2p1o_A* 2p1p_A* 2p1q_A* 3c6n_A* 3c6o_A* 3c6p_A* 3ogk_A* 3ogl_A* 3ogm_A*

Probab=91.54  E-value=0.01  Score=41.45  Aligned_cols=29  Identities=14%  Similarity=0.149  Sum_probs=12.5

Q ss_pred             EEEEe-CCeEEEeEEEeeccCCHHHHHhhCC
Q psy1854          75 CTIGA-DGQYLKAHKVVVSACSPYFQVSWDV  104 (110)
Q Consensus        75 V~l~v-~g~~f~aHk~VLAa~S~yFr~mf~~  104 (110)
                      |+|+. +|+.|.+|+.+ |.+|.||++||.+
T Consensus         6 v~L~SsDg~~f~v~~~v-A~~S~~ik~ml~~   35 (160)
T 2p1m_A            6 IVLKSSDGESFEVEEAV-ALESQTIAHMVED   35 (160)
T ss_dssp             --CCC---------CHH-HHTCTTTC-----
T ss_pred             EEEEcCCCCEEEECHHH-HHHhHHHHHHHHc
Confidence            66765 89999999998 8999999999975

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	110
d1r29a_	122	d.42.1.1 (A:) B-cell lymphoma 6 (Bcl6) protein BTB	2e-10
d1buoa_	121	d.42.1.1 (A:) Promyelocytic leukaemia zinc finger	3e-10

>d1r29a_ d.42.1.1 (A:) B-cell lymphoma 6 (Bcl6) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]} Length = 122

class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: BTB/POZ domain
domain: B-cell lymphoma 6 (Bcl6) protein BTB domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.7 bits (123), Expect = 2e-10
 Identities = 14/51 (27%), Positives = 24/51 (47%)

Query: 49 RLKWNNHCNTLLQVFGNLLKTETLVDCTIGADGQYLKAHKVVVSACSPYFQ 99
          ++++  H + +L     L   + L D  I    +  +AHK V+ ACS  F 
Sbjct: 2  QIQFTRHASDVLLNLNRLRSRDILTDVVIVVSREQFRAHKTVLMACSGLFY 52

>d1buoa_ d.42.1.1 (A:) Promyelocytic leukaemia zinc finger (PLZF) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]} Length = 121

class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: BTB/POZ domain
domain: Promyelocytic leukaemia zinc finger (PLZF) protein BTB domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.2 bits (122), Expect = 3e-10
 Identities = 15/60 (25%), Positives = 25/60 (41%)

Query: 49  RLKWNNHCNTLLQVFGNLLKTETLVDCTIGADGQYLKAHKVVVSACSPYFQVSWDVVFCM 108
           +L+  +H   LL     +    TL D  I  D Q   AH+ V++  S  F++ +      
Sbjct: 5   QLQNPSHPTGLLCKANQMRLAGTLCDVVIMVDSQEFHAHRTVLACTSKMFEILFHRNSQH 64

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	110
d1buoa_	121	Promyelocytic leukaemia zinc finger (PLZF) protein	99.68
d1r29a_	122	B-cell lymphoma 6 (Bcl6) protein BTB domain {Human	99.65

>d1buoa_ d.42.1.1 (A:) Promyelocytic leukaemia zinc finger (PLZF) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: BTB/POZ domain
domain: Promyelocytic leukaemia zinc finger (PLZF) protein BTB domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=4.6e-18  Score=114.45  Aligned_cols=61  Identities=25%  Similarity=0.279  Sum_probs=57.5

Q ss_pred             ceeEeecCCcHHHHHHHHHhhhcCCCcceEEEEeCCeEEEeEEEeeccCCHHHHHhhCCCC
Q psy1854          46 QQFRLKWNNHCNTLLQVFGNLLKTETLVDCTIGADGQYLKAHKVVVSACSPYFQVSWDVVF  106 (110)
Q Consensus        46 ~~~~~~~~~h~~~~l~~l~~lr~~~~~~DV~l~v~g~~f~aHk~VLAa~S~yFr~mf~~~p  106 (110)
                      +.+.+++++|...+++.|+++|.++.||||+|.++|++|+|||+|||++|+||++||.+++
T Consensus         2 ~~~~~~~~~h~~~ll~~l~~l~~~~~~~Dv~l~v~~~~~~aHk~vLaa~S~~F~~lf~~~~   62 (121)
T d1buoa_           2 GMIQLQNPSHPTGLLCKANQMRLAGTLCDVVIMVDSQEFHAHRTVLACTSKMFEILFHRNS   62 (121)
T ss_dssp             CCCCCCCTTHHHHHHHHHHHHHHHTTTCCEEEEESSCEEEECHHHHHHHCHHHHHHTTSCC
T ss_pred             CeEEEcCCchHHHHHHHHHHHHhcCCcEeEEEEECCEEEEEEHHHhcccChhhhhhccCcc
Confidence            3567889999999999999999999999999999999999999999999999999998764

>d1r29a_ d.42.1.1 (A:) B-cell lymphoma 6 (Bcl6) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: BTB/POZ domain
domain: B-cell lymphoma 6 (Bcl6) protein BTB domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=2.5e-17  Score=110.21  Aligned_cols=59  Identities=24%  Similarity=0.400  Sum_probs=55.7

Q ss_pred             EeecCCcHHHHHHHHHhhhcCCCcceEEEEeCCeEEEeEEEeeccCCHHHHHhhCCCCc
Q psy1854          49 RLKWNNHCNTLLQVFGNLLKTETLVDCTIGADGQYLKAHKVVVSACSPYFQVSWDVVFC  107 (110)
Q Consensus        49 ~~~~~~h~~~~l~~l~~lr~~~~~~DV~l~v~g~~f~aHk~VLAa~S~yFr~mf~~~p~  107 (110)
                      .++|++|...++..|+++|+++.+|||+|.++|++|+|||.|||++|+||++||.+.+.
T Consensus         2 ~~~~~~h~~~ll~~l~~l~~~~~~~Dv~l~v~~~~~~~Hk~vLa~~S~~F~~~f~~~~~   60 (122)
T d1r29a_           2 QIQFTRHASDVLLNLNRLRSRDILTDVVIVVSREQFRAHKTVLMACSGLFYSIFTDQLK   60 (122)
T ss_dssp             CCCCTTHHHHHHHHHHHHHHTTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHTSTTT
T ss_pred             CcccchHHHHHHHHHHHHHhcCCCeEEEEEECCEEEEEehHHhhhCCHHHHHHhccchh
Confidence            36789999999999999999999999999999999999999999999999999987764