Psyllid ID: psy1870

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260----
AKLGHCNALECNSKINSKGERSQIYHLEPNYYGNGWCLSGTAEMGIARYLMNQTLPESQLPKQIAAMSKCYRAEISVVADEKGVYRVHCFTKIEMFGVTLPEDSEKQLEQFLQFEESLFGELGIHTRTLNMGANELGAQAYKKYDVEAWMPGRKHWGELSSCSDCTDYQARRLNIRTEDGKFAHTLNGTACAIPRLLMALVETHQNQDGTVNIPECLQPFMFNKRIIGDTRGAPSLVKVKTGISKAKKKVLAKAALNNVKVAEG
cccccccccccccccccccccccccccccccccccEEEEEcccccHHHHHcccccccccccccEEEccccccccccccccccccEEEccccEEEEEEEcccccHHHHHHHHHHHHHHHHHHHccccEEEEEcccccccccccccEEEEEccccccEEEEEcccccHHHHHHHcccccccccEEEEccccccHHHHHHHHHHHHcccccccEEcccccccccccEEEEccccccccccccccccccccccccHHHHccccccccc
cccccccccHccccccccccHHHHEEEccccccccEEEEEcccccccHccHHHcccHHccccEEEEcccccHHHcccccccHHHHHHccccEEEEEEEEcccccHHHHHHHHHHHHHHHHHccccEEEEEEEcccccccccccccEEEEEcccccEEEEcccccHHHHHHHHHHccccccEEcEEEEEEEEEEcHHHHHHHHHHEcccccEEccHHHHHHHcccEEEcccccccccccHHcHHHHHHHHHHHHHHHHccEEccc
aklghcnalecnskinskgersqiyhlepnyygngwclsgtAEMGIARYLMnqtlpesqlPKQIAAMSKCYRAEISvvadekgvyrvHCFTKIEmfgvtlpedsEKQLEQFLQFEESLFGELGIHTRTLNMGanelgaqaykkydveawmpgrkhwgelsscsdctDYQARRLNirtedgkfahtlngtaCAIPRLLMALVETHqnqdgtvnipeclqpfmfnkriigdtrgapslvKVKTGISKAKKKVLAKAALNNVKVAEG
aklghcnalecnskinskgersQIYHLEPNYYGNGWCLSGTAEMGIARYLMNQTLPESQLPKQIAAMSKCYRAEISvvadekgvyRVHCFTKIEMFGVTLPEDSEKQLEQFLQFEESLFGELGIHTRTLNMGANELGAQAYKKYDVEAWMPGRKHWGELSSCSDCTDYQARRLNIRtedgkfahtLNGTACAIPRLLMALVETHQNQDGTVNIPECLQPFMFNKRIIGDTRGAPSLVKVKTgiskakkkvlakaalnnvkvaeg
AKLGHCNALECNSKINSKGERSQIYHLEPNYYGNGWCLSGTAEMGIARYLMNQTLPESQLPKQIAAMSKCYRAEISVVADEKGVYRVHCFTKIEMFGVTLPEDSEKqleqflqfeeslfGELGIHTRTLNMGANELGAQAYKKYDVEAWMPGRKHWGELSSCSDCTDYQARRLNIRTEDGKFAHTLNGTACAIPRLLMALVETHQNQDGTVNIPECLQPFMFNKRIIGDTRGAPSLVKVKTGISkakkkvlakaalnnvkvaEG
**********************QIYHLEPNYYGNGWCLSGTAEMGIARYLMNQTLPESQLPKQIAAMSKCYRAEISVVADEKGVYRVHCFTKIEMFGVTLPEDSEKQLEQFLQFEESLFGELGIHTRTLNMGANELGAQAYKKYDVEAWMPGRKHWGELSSCSDCTDYQARRLNIRTEDGKFAHTLNGTACAIPRLLMALVETHQNQDGTVNIPECLQPFMFNKRIIGDTRGAPSLVKVKTGISK****VL*************
**********CNSKINSKGERSQIYHLEPNYYGNGWCLSGTAEMGIARYLMNQTLPESQLPKQIAAMSKCYRAEISVVADEKGVYRVHCFTKIEMFGVTLPEDSEKQLEQFLQFEESLFGELGIHTRTLNMGANELGAQAYKKYDVEAWMPGRKHWGELSSCSDCTDYQARRLNIRTEDGKFAHTLNGTACAIPRLLMALVETHQNQDGTVNIPECLQPFMFNKRIIGD*****************************V*****
AKLGHCNALECNSKINSKGERSQIYHLEPNYYGNGWCLSGTAEMGIARYLMNQTLPESQLPKQIAAMSKCYRAEISVVADEKGVYRVHCFTKIEMFGVTLPEDSEKQLEQFLQFEESLFGELGIHTRTLNMGANELGAQAYKKYDVEAWMPGRKHWGELSSCSDCTDYQARRLNIRTEDGKFAHTLNGTACAIPRLLMALVETHQNQDGTVNIPECLQPFMFNKRIIGDTRGAPSLVKVKTGISKAKKKVLAKAALNNVKVAEG
*******ALECNSKINSKGERSQIYHLEPNYYGNGWCLSGTAEMGIARYLMNQTLPESQLPKQIAAMSKCYRAEISVVADEKGVYRVHCFTKIEMFGVTLPEDSEKQLEQFLQFEESLFGELGIHTRTLNMGANELGAQAYKKYDVEAWMPGRKHWGELSSCSDCTDYQARRLNIRTEDGKFAHTLNGTACAIPRLLMALVETHQNQDGTVNIPECLQPFMFNKRIIGDTRGAPSLVKVKTGISKAKKKVLAKAALNNVKVA**
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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AKLGHCNALECNSKINSKGERSQIYHLEPNYYGNGWCLSGTAEMGIARYLMNQTLPESQLPKQIAAMSKCYRAEISVVADEKGVYRVHCFTKIEMFGVTLPEDSEKQLEQFLQFEESLFGELGIHTRTLNMGANELGAQAYKKYDVEAWMPGRKHWGELSSCSDCTDYQARRLNIRTEDGKFAHTLNGTACAIPRLLMALVETHQNQDGTVNIPECLQPFMFNKRIIGDTRGAPSLVKVKTGISKAKKKVLAKAALNNVKVAEG
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query264 2.2.26 [Sep-21-2011]
Q9NP81518 Serine--tRNA ligase, mito yes N/A 0.787 0.401 0.493 5e-56
Q9N0F3518 Serine--tRNA ligase, mito yes N/A 0.821 0.418 0.477 7e-56
Q9JJL8518 Serine--tRNA ligase, mito yes N/A 0.787 0.401 0.483 4e-55
Q1AX26424 Serine--tRNA ligase OS=Ru yes N/A 0.791 0.492 0.447 2e-47
B2S3N6426 Serine--tRNA ligase OS=Tr yes N/A 0.780 0.483 0.451 5e-47
O83653426 Serine--tRNA ligase OS=Tr yes N/A 0.780 0.483 0.451 5e-47
P38705446 Serine--tRNA ligase, mito yes N/A 0.761 0.450 0.467 1e-46
Q7UXX6426 Serine--tRNA ligase OS=Rh yes N/A 0.768 0.476 0.425 1e-45
B5YEY8425 Serine--tRNA ligase OS=Di yes N/A 0.757 0.470 0.440 3e-45
B8E0R9425 Serine--tRNA ligase OS=Di yes N/A 0.757 0.470 0.444 3e-45
>sp|Q9NP81|SYSM_HUMAN Serine--tRNA ligase, mitochondrial OS=Homo sapiens GN=SARS2 PE=1 SV=1 Back     alignment and function desciption
 Score =  218 bits (554), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 106/215 (49%), Positives = 152/215 (70%), Gaps = 7/215 (3%)

Query: 22  SQIYHLEPNYYGNGWCLSGTAEMGIARYLMNQTLPESQLPKQIAAMSKCYRAEISVVADE 81
           SQIY+++P  + +   L+GTAE+G+A Y M+ T+    LP ++   S CYRAE +   + 
Sbjct: 281 SQIYNIDPARFKD-LNLAGTAEVGLAGYFMDHTVAFRDLPVRMVCSSTCYRAETNTGQEP 339

Query: 82  KGVYRVHCFTKIEMFGVTLP--EDSEKQLEQFLQFEESLFGELGIHTRTLNMGANELGAQ 139
           +G+YRVH FTK+EMFGVT P  E S + LE+FL  +  +  ELG+H R L+M   ELG  
Sbjct: 340 RGLYRVHHFTKVEMFGVTGPGLEQSSQLLEEFLSLQMEILTELGLHFRVLDMPTQELGLP 399

Query: 140 AYKKYDVEAWMPGRKHWGELSSCSDCTDYQARRLNI--RTEDG--KFAHTLNGTACAIPR 195
           AY+K+D+EAWMPGR  +GE++S S+CTD+Q+RRL+I  +TE G  +FAHT+N TACA+PR
Sbjct: 400 AYRKFDIEAWMPGRGRFGEVTSASNCTDFQSRRLHIMFQTEAGELQFAHTVNATACAVPR 459

Query: 196 LLMALVETHQNQDGTVNIPECLQPFMFNKRIIGDT 230
           LL+AL+E++Q +DG+V +P  LQ ++   RI   T
Sbjct: 460 LLIALLESNQQKDGSVLVPPALQSYLGTDRITAPT 494
Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L-seryl-tRNA(Sec), which will be further converted into selenocysteinyl-tRNA(Sec).
Homo sapiens (taxid: 9606)
EC: 6EC: .EC: 1EC: .EC: 1EC: .EC: 1EC: 1
>sp|Q9N0F3|SYSM_BOVIN Serine--tRNA ligase, mitochondrial OS=Bos taurus GN=SARS2 PE=1 SV=1 Back     alignment and function description
>sp|Q9JJL8|SYSM_MOUSE Serine--tRNA ligase, mitochondrial OS=Mus musculus GN=Sars2 PE=2 SV=2 Back     alignment and function description
>sp|Q1AX26|SYS_RUBXD Serine--tRNA ligase OS=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) GN=serS PE=3 SV=1 Back     alignment and function description
>sp|B2S3N6|SYS_TREPS Serine--tRNA ligase OS=Treponema pallidum subsp. pallidum (strain SS14) GN=serS PE=3 SV=1 Back     alignment and function description
>sp|O83653|SYS_TREPA Serine--tRNA ligase OS=Treponema pallidum (strain Nichols) GN=serS PE=3 SV=1 Back     alignment and function description
>sp|P38705|SYSM_YEAST Serine--tRNA ligase, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=DIA4 PE=1 SV=1 Back     alignment and function description
>sp|Q7UXX6|SYS_RHOBA Serine--tRNA ligase OS=Rhodopirellula baltica (strain SH1) GN=serS PE=3 SV=2 Back     alignment and function description
>sp|B5YEY8|SYS_DICT6 Serine--tRNA ligase OS=Dictyoglomus thermophilum (strain ATCC 35947 / DSM 3960 / H-6-12) GN=serS PE=3 SV=1 Back     alignment and function description
>sp|B8E0R9|SYS_DICTD Serine--tRNA ligase OS=Dictyoglomus turgidum (strain Z-1310 / DSM 6724) GN=serS PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query264
270001083 422 hypothetical protein TcasGA2_TC011377 [T 0.856 0.535 0.572 2e-73
357626146232 hypothetical protein KGM_12910 [Danaus p 0.825 0.939 0.565 4e-69
321475819 434 hypothetical protein DAPPUDRAFT_44560 [D 0.780 0.474 0.553 1e-65
170042016 442 seryl-tRNA synthetase [Culex quinquefasc 0.833 0.497 0.535 1e-64
193678861 384 PREDICTED: seryl-tRNA synthetase, mitoch 0.852 0.585 0.491 1e-64
345490891 429 PREDICTED: seryl-tRNA synthetase, mitoch 0.795 0.489 0.539 2e-64
195053792 436 GH19144 [Drosophila grimshawi] gi|193895 0.837 0.506 0.521 5e-64
198452048 418 GA18540 [Drosophila pseudoobscura pseudo 0.833 0.526 0.519 1e-63
195445270 420 GK11136 [Drosophila willistoni] gi|19416 0.833 0.523 0.519 1e-63
405975227 427 Seryl-tRNA synthetase, mitochondrial [Cr 0.848 0.524 0.508 2e-63
>gi|270001083|gb|EEZ97530.1| hypothetical protein TcasGA2_TC011377 [Tribolium castaneum] Back     alignment and taxonomy information
 Score =  281 bits (719), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 130/227 (57%), Positives = 172/227 (75%), Gaps = 1/227 (0%)

Query: 15  INSKGERSQIYHLEPNYYGNGWCLSGTAEMGIARYLMNQTLPESQLPKQIAAMSKCYRAE 74
           +N+KG R+Q+Y L+   +G  WCLSGT+EM +A YL N+TL    LP ++AA+S+CYRAE
Sbjct: 194 MNTKGARTQVYALDSTLHGPDWCLSGTSEMALAGYLSNKTLNSDILPLKLAAVSRCYRAE 253

Query: 75  ISVVADEKGVYRVHCFTKIEMFGVTLPEDSEKQLEQFLQFEESLFGELGIHTRTLNMGAN 134
            S + +E+G+YRVH FTK+EMF VT P++SE+ LE  L+ E  +F  LG+H + L+M  +
Sbjct: 254 TSNLLEERGIYRVHEFTKVEMFVVTQPQNSEQALEDILKLEMDIFESLGLHFQVLDMPPH 313

Query: 135 ELGAQAYKKYDVEAWMPGRKHWGELSSCSDCTDYQARRLNIRTEDGKFAHTLNGTACAIP 194
           ELGAQAY+KYD+EAWMPGR  +GE+SSCS+C DYQARRL IRT DG F HTLNGTACA+P
Sbjct: 314 ELGAQAYRKYDIEAWMPGRGLYGEISSCSNCLDYQARRLGIRTHDG-FVHTLNGTACAVP 372

Query: 195 RLLMALVETHQNQDGTVNIPECLQPFMFNKRIIGDTRGAPSLVKVKT 241
           RLL+ALVE  Q ++GTV +PE L P+M  K++IG  +  P L  +KT
Sbjct: 373 RLLIALVEMGQRKNGTVGLPEVLWPYMGGKQLIGKQKSVPDLRLIKT 419

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|357626146|gb|EHJ76341.1| hypothetical protein KGM_12910 [Danaus plexippus] Back     alignment and taxonomy information
>gi|321475819|gb|EFX86781.1| hypothetical protein DAPPUDRAFT_44560 [Daphnia pulex] Back     alignment and taxonomy information
>gi|170042016|ref|XP_001848739.1| seryl-tRNA synthetase [Culex quinquefasciatus] gi|167865551|gb|EDS28934.1| seryl-tRNA synthetase [Culex quinquefasciatus] Back     alignment and taxonomy information
>gi|193678861|ref|XP_001944269.1| PREDICTED: seryl-tRNA synthetase, mitochondrial-like [Acyrthosiphon pisum] Back     alignment and taxonomy information
>gi|345490891|ref|XP_001607907.2| PREDICTED: seryl-tRNA synthetase, mitochondrial-like [Nasonia vitripennis] Back     alignment and taxonomy information
>gi|195053792|ref|XP_001993810.1| GH19144 [Drosophila grimshawi] gi|193895680|gb|EDV94546.1| GH19144 [Drosophila grimshawi] Back     alignment and taxonomy information
>gi|198452048|ref|XP_001358602.2| GA18540 [Drosophila pseudoobscura pseudoobscura] gi|198131765|gb|EAL27743.2| GA18540 [Drosophila pseudoobscura pseudoobscura] Back     alignment and taxonomy information
>gi|195445270|ref|XP_002070251.1| GK11136 [Drosophila willistoni] gi|194166336|gb|EDW81237.1| GK11136 [Drosophila willistoni] Back     alignment and taxonomy information
>gi|405975227|gb|EKC39808.1| Seryl-tRNA synthetase, mitochondrial [Crassostrea gigas] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query264
FB|FBgn0021750417 Aats-ser "Seryl-tRNA synthetas 0.833 0.527 0.497 7.8e-55
UNIPROTKB|E7EX87518 SARS2 "Serine--tRNA ligase, mi 0.787 0.401 0.474 6e-48
UNIPROTKB|Q9NP81518 SARS2 "Serine--tRNA ligase, mi 0.787 0.401 0.474 6e-48
UNIPROTKB|G8JKV4459 SARS2 "Serine--tRNA ligase, mi 0.821 0.472 0.460 9.8e-48
UNIPROTKB|Q9N0F3518 SARS2 "Serine--tRNA ligase, mi 0.821 0.418 0.460 9.8e-48
UNIPROTKB|E2QUT6524 FBXO17 "Uncharacterized protei 0.772 0.389 0.473 1.6e-47
MGI|MGI:1919234518 Sars2 "seryl-aminoacyl-tRNA sy 0.787 0.401 0.469 1.6e-47
RGD|1309456518 Sars2 "seryl-tRNA synthetase 2 0.787 0.401 0.465 3.3e-47
TAIR|locus:2008865514 SRS "Seryl-tRNA synthetase" [A 0.587 0.301 0.45 2.1e-45
ZFIN|ZDB-GENE-040426-1616510 sars2 "seryl-tRNA synthetase 2 0.761 0.394 0.454 1.7e-43
FB|FBgn0021750 Aats-ser "Seryl-tRNA synthetase" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 566 (204.3 bits), Expect = 7.8e-55, P = 7.8e-55
 Identities = 115/231 (49%), Positives = 155/231 (67%)

Query:    15 INSKGERSQIYHLEPNYYGNGWCLSGTAEMGIARYLMNQTLPESQLPKQIAAMSKCYRAE 74
             + ++GER+Q+Y L+      G CLSGT+EM +A +  N+ L E QLP ++ A+S+CYRAE
Sbjct:   189 MRTEGERTQVYKLD-----TGECLSGTSEMALAGFFANKLLSEDQLPLKVTAVSRCYRAE 243

Query:    75 ISVVADEKGVYRVHCFTKIEMFGVTLPEDSEKXXXXXXXXXXXXXGELGIHTRTLNMGAN 134
              S + +EKG+YRVH F K+EMF +   E SE                LG++ R L+M   
Sbjct:   244 TSGLQEEKGIYRVHQFNKVEMFAICTEEQSEAELEEFKNIEVDLFRRLGLNFRLLDMPPC 303

Query:   135 ELGAQAYKKYDVEAWMPGRKHWGELSSCSDCTDYQARRLNIR---TEDGKF--AHTLNGT 189
             ELGA AY+KYD+EAWMPGR+ WGE+SSCS+CTDYQARRL IR   + DG+   AHT+NGT
Sbjct:   304 ELGAPAYQKYDIEAWMPGRQMWGEISSCSNCTDYQARRLGIRYRRSADGQILHAHTINGT 363

Query:   190 ACAIPRLLMALVETHQNQDGTVNIPECLQPFMFNKRIIGDTRGAPSLVKVK 240
             A AIPRLL+AL+E++Q +DG + IP  L+PFM N+ +I   +  P    VK
Sbjct:   364 ATAIPRLLIALLESYQKEDG-IEIPAVLRPFMDNQELITRNKRIPETKLVK 413
GO:0006434 "seryl-tRNA aminoacylation" evidence=ISS
GO:0004828 "serine-tRNA ligase activity" evidence=ISS
GO:0005737 "cytoplasm" evidence=IEA
GO:0005524 "ATP binding" evidence=IEA
UNIPROTKB|E7EX87 SARS2 "Serine--tRNA ligase, mitochondrial" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|Q9NP81 SARS2 "Serine--tRNA ligase, mitochondrial" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|G8JKV4 SARS2 "Serine--tRNA ligase, mitochondrial" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|Q9N0F3 SARS2 "Serine--tRNA ligase, mitochondrial" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|E2QUT6 FBXO17 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
MGI|MGI:1919234 Sars2 "seryl-aminoacyl-tRNA synthetase 2" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|1309456 Sars2 "seryl-tRNA synthetase 2, mitochondrial" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
TAIR|locus:2008865 SRS "Seryl-tRNA synthetase" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-040426-1616 sars2 "seryl-tRNA synthetase 2, mitochondrial" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
4th Layer6.1.1.110.737
3rd Layer6.1.10.691

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query264
cd00770297 cd00770, SerRS_core, Seryl-tRNA synthetase (SerRS) 3e-94
PRK05431425 PRK05431, PRK05431, seryl-tRNA synthetase; Provisi 9e-79
COG0172429 COG0172, SerS, Seryl-tRNA synthetase [Translation, 1e-75
TIGR00414418 TIGR00414, serS, seryl-tRNA synthetase 6e-73
PLN02320502 PLN02320, PLN02320, seryl-tRNA synthetase 1e-69
PLN02678448 PLN02678, PLN02678, seryl-tRNA synthetase 1e-47
pfam00587171 pfam00587, tRNA-synt_2b, tRNA synthetase class II 6e-30
cd00670235 cd00670, Gly_His_Pro_Ser_Thr_tRS_core, Gly_His_Pro 1e-12
cd00768211 cd00768, class_II_aaRS-like_core, Class II tRNA am 2e-07
>gnl|CDD|238393 cd00770, SerRS_core, Seryl-tRNA synthetase (SerRS) class II core catalytic domain Back     alignment and domain information 
 Score =  279 bits (715), Expect = 3e-94
 Identities = 93/209 (44%), Positives = 133/209 (63%), Gaps = 10/209 (4%)

Query: 19  GERSQIYHLEPNYYGNGWCLSGTAEMGIARYLMNQTLPESQLPKQIAAMSKCYRAEI-SV 77
               Q+Y +E         L  TAE+ +A    ++ L E +LP + A  S C+R E  S 
Sbjct: 93  KFDEQLYKVEGEDL----YLIATAEVPLAALHRDEILEEEELPLKYAGYSPCFRKEAGSA 148

Query: 78  VADEKGVYRVHCFTKIEMFGVTLPEDSEKQLEQFLQFEESLFGELGIHTRTLNMGANELG 137
             D +G++RVH F K+E F  T PE+S ++LE+ +   E +  ELG+  R +N+   +LG
Sbjct: 149 GRDTRGLFRVHQFEKVEQFVFTKPEESWEELEELISNAEEILQELGLPYRVVNICTGDLG 208

Query: 138 AQAYKKYDVEAWMPGRKHWGELSSCSDCTDYQARRLNIR---TEDGK--FAHTLNGTACA 192
             A KKYD+EAWMPG+  + E+SSCS+CTD+QARRLNIR    +DGK  + HTLNGTA A
Sbjct: 209 FAAAKKYDIEAWMPGQGKYREISSCSNCTDFQARRLNIRYRDKKDGKKQYVHTLNGTALA 268

Query: 193 IPRLLMALVETHQNQDGTVNIPECLQPFM 221
            PR ++A++E +Q +DG+V IPE L+P+M
Sbjct: 269 TPRTIVAILENYQTEDGSVVIPEVLRPYM 297

SerRS is responsible for the attachment of serine to the 3' OH group of ribose of the appropriate tRNA. This domain It is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain. SerRS synthetase is a homodimer. Length = 297
>gnl|CDD|235461 PRK05431, PRK05431, seryl-tRNA synthetase; Provisional Back     alignment and domain information
>gnl|CDD|223250 COG0172, SerS, Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|232965 TIGR00414, serS, seryl-tRNA synthetase Back     alignment and domain information
>gnl|CDD|177954 PLN02320, PLN02320, seryl-tRNA synthetase Back     alignment and domain information
>gnl|CDD|215364 PLN02678, PLN02678, seryl-tRNA synthetase Back     alignment and domain information
>gnl|CDD|216009 pfam00587, tRNA-synt_2b, tRNA synthetase class II core domain (G, H, P, S and T) Back     alignment and domain information
>gnl|CDD|238359 cd00670, Gly_His_Pro_Ser_Thr_tRS_core, Gly_His_Pro_Ser_Thr_tRNA synthetase class II core domain Back     alignment and domain information
>gnl|CDD|238391 cd00768, class_II_aaRS-like_core, Class II tRNA amino-acyl synthetase-like catalytic core domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 264
PLN02678448 seryl-tRNA synthetase 100.0
PLN02320502 seryl-tRNA synthetase 100.0
KOG2509|consensus455 100.0
PRK05431425 seryl-tRNA synthetase; Provisional 100.0
COG0172429 SerS Seryl-tRNA synthetase [Translation, ribosomal 100.0
TIGR00414418 serS seryl-tRNA synthetase. This model represents 100.0
cd00770297 SerRS_core Seryl-tRNA synthetase (SerRS) class II 100.0
cd00779255 ProRS_core_prok Prolyl-tRNA synthetase (ProRS) cla 100.0
cd00772264 ProRS_core Prolyl-tRNA synthetase (ProRS) class II 100.0
PRK00960517 seryl-tRNA synthetase; Provisional 100.0
KOG2324|consensus457 100.0
cd00778261 ProRS_core_arch_euk Prolyl-tRNA synthetase (ProRS) 100.0
PRK08661 477 prolyl-tRNA synthetase; Provisional 100.0
TIGR00408 472 proS_fam_I prolyl-tRNA synthetase, family I. Proly 100.0
TIGR00409 568 proS_fam_II prolyl-tRNA synthetase, family II. Pro 100.0
PRK09194 565 prolyl-tRNA synthetase; Provisional 100.0
TIGR00415520 serS_MJ seryl-tRNA synthetase, Methanococcus janna 100.0
PRK12325439 prolyl-tRNA synthetase; Provisional 100.0
PRK03991613 threonyl-tRNA synthetase; Validated 100.0
cd00771298 ThrRS_core Threonyl-tRNA synthetase (ThrRS) class 100.0
COG0442 500 ProS Prolyl-tRNA synthetase [Translation, ribosoma 100.0
PLN02837614 threonine-tRNA ligase 100.0
PF00587173 tRNA-synt_2b: tRNA synthetase class II core domain 100.0
PRK04173456 glycyl-tRNA synthetase; Provisional 100.0
cd00670235 Gly_His_Pro_Ser_Thr_tRS_core Gly_His_Pro_Ser_Thr_t 100.0
PRK14799545 thrS threonyl-tRNA synthetase; Provisional 99.97
PLN02908686 threonyl-tRNA synthetase 99.97
PRK12444639 threonyl-tRNA synthetase; Reviewed 99.97
TIGR00418563 thrS threonyl-tRNA synthetase. This model represen 99.96
PRK14894 539 glycyl-tRNA synthetase; Provisional 99.96
PRK12305575 thrS threonyl-tRNA synthetase; Reviewed 99.96
COG0441589 ThrS Threonyl-tRNA synthetase [Translation, riboso 99.95
PLN02734 684 glycyl-tRNA synthetase 99.95
TIGR00389551 glyS_dimeric glycyl-tRNA synthetase, dimeric type. 99.94
COG0423558 GRS1 Glycyl-tRNA synthetase (class II) [Translatio 99.94
KOG4163|consensus 551 99.93
KOG1637|consensus560 99.93
PRK00413638 thrS threonyl-tRNA synthetase; Reviewed 99.92
cd00774254 GlyRS-like_core Glycyl-tRNA synthetase (GlyRS)-lik 99.87
PRK07080317 hypothetical protein; Validated 99.72
KOG2298|consensus 599 99.71
cd00768211 class_II_aaRS-like_core Class II tRNA amino-acyl s 99.68
cd00773261 HisRS-like_core Class II Histidinyl-tRNA synthetas 99.15
CHL00201 430 syh histidine-tRNA synthetase; Provisional 99.07
TIGR00442 397 hisS histidyl-tRNA synthetase. This model finds a 98.91
PRK00037 412 hisS histidyl-tRNA synthetase; Reviewed 98.79
PRK09537417 pylS pyrolysyl-tRNA synthetase; Reviewed 98.79
COG0124 429 HisS Histidyl-tRNA synthetase [Translation, riboso 98.78
PLN02530 487 histidine-tRNA ligase 98.64
PRK12420 423 histidyl-tRNA synthetase; Provisional 98.61
PF01409247 tRNA-synt_2d: tRNA synthetases class II core domai 98.58
PTZ00326494 phenylalanyl-tRNA synthetase alpha chain; Provisio 98.58
TIGR00443314 hisZ_biosyn_reg ATP phosphoribosyltransferase, reg 98.49
COG0016335 PheS Phenylalanyl-tRNA synthetase alpha subunit [T 98.35
PRK12293281 hisZ ATP phosphoribosyltransferase regulatory subu 98.16
PRK04172489 pheS phenylalanyl-tRNA synthetase subunit alpha; P 98.13
PLN02853492 Probable phenylalanyl-tRNA synthetase alpha chain 98.13
TIGR02367453 PylS pyrrolysyl-tRNA synthetase. PylS is the archa 98.11
PRK12295373 hisZ ATP phosphoribosyltransferase regulatory subu 98.09
PRK12292391 hisZ ATP phosphoribosyltransferase regulatory subu 98.07
TIGR00470 533 sepS O-phosphoseryl-tRNA(Cys) synthetase. This fam 98.02
PLN02972 763 Histidyl-tRNA synthetase 97.92
PRK00488339 pheS phenylalanyl-tRNA synthetase subunit alpha; V 97.91
cd00669269 Asp_Lys_Asn_RS_core Asp_Lys_Asn_tRNA synthetase cl 97.87
PRK12421392 ATP phosphoribosyltransferase regulatory subunit; 97.86
PF13393311 tRNA-synt_His: Histidyl-tRNA synthetase; PDB: 3HRI 97.58
COG0442500 ProS Prolyl-tRNA synthetase [Translation, ribosoma 97.11
KOG1936|consensus 518 97.08
TIGR00468294 pheS phenylalanyl-tRNA synthetase, alpha subunit. 96.95
COG0173 585 AspS Aspartyl-tRNA synthetase [Translation, riboso 96.89
KOG2411|consensus 628 96.5
PLN02788402 phenylalanine-tRNA synthetase 96.43
COG2024 536 Phenylalanyl-tRNA synthetase alpha subunit (archae 96.17
PLN02903 652 aminoacyl-tRNA ligase 95.46
PF00152335 tRNA-synt_2: tRNA synthetases class II (D, K and N 95.44
PRK09350306 poxB regulator PoxA; Provisional 95.35
TIGR00459 583 aspS_bact aspartyl-tRNA synthetase, bacterial type 95.31
PRK12820 706 bifunctional aspartyl-tRNA synthetase/aspartyl/glu 95.05
PRK00476 588 aspS aspartyl-tRNA synthetase; Validated 94.71
TIGR00469 460 pheS_mito phenylalanyl-tRNA synthetase, mitochondr 94.26
PLN02850530 aspartate-tRNA ligase 93.8
PRK06253 529 O-phosphoseryl-tRNA synthetase; Reviewed 93.75
COG3705390 HisZ ATP phosphoribosyltransferase involved in his 93.69
PRK00484491 lysS lysyl-tRNA synthetase; Reviewed 93.67
cd00776322 AsxRS_core Asx tRNA synthetase (AspRS/AsnRS) class 93.54
cd02426128 Pol_gamma_b_Cterm C-terminal domain of mitochondri 93.16
cd00775329 LysRS_core Lys_tRNA synthetase (LysRS) class II co 93.14
PRK12445505 lysyl-tRNA synthetase; Reviewed 92.97
PLN02502553 lysyl-tRNA synthetase 92.93
PTZ00385 659 lysyl-tRNA synthetase; Provisional 92.89
PRK06462335 asparagine synthetase A; Reviewed 92.49
PRK03932450 asnC asparaginyl-tRNA synthetase; Validated 92.47
KOG0555|consensus545 92.39
PTZ00425586 asparagine-tRNA ligase; Provisional 92.38
PRK05159437 aspC aspartyl-tRNA synthetase; Provisional 92.35
PTZ00417585 lysine-tRNA ligase; Provisional 92.17
TIGR00458428 aspS_arch aspartyl-tRNA synthetase, archaeal type. 91.99
cd00777280 AspRS_core Asp tRNA synthetase (aspRS) class II co 91.68
cd00496218 PheRS_alpha_core Phenylalanyl-tRNA synthetase (Phe 91.57
TIGR00457453 asnS asparaginyl-tRNA synthetase. In a multiple se 91.13
TIGR00462304 genX lysyl-tRNA synthetase-like protein GenX. Many 91.11
TIGR00499496 lysS_bact lysyl-tRNA synthetase, eukaryotic and no 91.04
KOG2784|consensus483 90.02
PLN02221572 asparaginyl-tRNA synthetase 89.73
PTZ00401550 aspartyl-tRNA synthetase; Provisional 89.4
PLN02532633 asparagine-tRNA synthetase 89.33
PLN02603565 asparaginyl-tRNA synthetase 88.46
PRK029831094 lysS lysyl-tRNA synthetase; Provisional 88.24
cd00774254 GlyRS-like_core Glycyl-tRNA synthetase (GlyRS)-lik 88.22
PRK12294272 hisZ ATP phosphoribosyltransferase regulatory subu 86.96
COG2269322 Truncated, possibly inactive, lysyl-tRNA synthetas 83.23
>PLN02678 seryl-tRNA synthetase Back     alignment and domain information 
Probab=100.00  E-value=1.2e-69  Score=517.77  Aligned_cols=235  Identities=35%  Similarity=0.552  Sum_probs=219.8

Q ss_pred             chhhhhhcCCCCCCCCCceEEeecCCCCCceEEeCCchHHHHHHHhccccCCCCCcceEEEecceeccCc-cCCccCCCc
Q psy1870           6 CNALECNSKINSKGERSQIYHLEPNYYGNGWCLSGTAEMGIARYLMNQTLPESQLPKQIAAMSKCYRAEI-SVVADEKGV   84 (264)
Q Consensus         6 ~~~l~~~~G~~~~~~~~~ly~i~~~~~~~~~~L~pTaE~~i~~l~~~~~~syr~LPl~l~q~s~~fR~E~-s~g~~~~GL   84 (264)
                      ...+|++||++|.+ +++||++++.  ++++||+||||++++++++++++||++||++++++|+|||+|+ ++|++++||
T Consensus       203 ~~~~~~~sG~~~~f-~e~my~i~~~--~~~~yLi~TaE~~l~~~h~~~~~s~~eLPlr~~~~s~cfR~Eags~G~~~~GL  279 (448)
T PLN02678        203 RKDVMAKCAQLAQF-DEELYKVTGE--GDDKYLIATSEQPLCAYHRGDWIDPKELPIRYAGYSTCFRKEAGSHGRDTLGI  279 (448)
T ss_pred             cHHHHhhcCCcccc-hhcCceecCC--CCceeeecccccccChHHhcccCCHHhCCceeEEeccccccccccCCCcCCcc
Confidence            36789999999987 8899999754  3689999999999999999999999999999999999999999 568999999


Q ss_pred             eeeEEEEEeeEEEEcCcch--HHHHHHHHHHHHHHHHHHhCCceEEEEccCCCcCchhhcccceeeecCcccccceeEec
Q psy1870          85 YRVHCFTKIEMFGVTLPED--SEKQLEQFLQFEESLFGELGIHTRTLNMGANELGAQAYKKYDVEAWMPGRKHWGELSSC  162 (264)
Q Consensus        85 ~R~reF~~~E~~~f~~pe~--s~~~~~~~~~~~~~i~~~Lglpyr~v~~~~~dl~~~a~~~ydiE~w~p~~~~~~Ev~s~  162 (264)
                      +|+|||+|+|+|+||+|++  |.++|+++++.+++||+.||||||+|.+|++|||++++++||||+|+|+++.|+||+||
T Consensus       280 ~RvhqF~KvE~f~~~~pe~~~s~~~~e~~l~~~~~i~~~L~lpyrvv~~~sgdlg~~a~~~yDiE~W~P~~~~y~EvsS~  359 (448)
T PLN02678        280 FRVHQFEKVEQFCITSPNGNESWEMHEEMLKNSEDFYQSLGIPYQVVSIVSGALNDAAAKKYDLEAWFPASKTYRELVSC  359 (448)
T ss_pred             eEEEEEEEEEEEEEECCCchhHHHHHHHHHHHHHHHHHHcCCCeEEEeecccccCCchhhceeeEeeccccCCceEEeee
Confidence            9999999999999999998  99999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCccchhhcccceeecCC-------CceeEEecccccHhHHHHHHHHhccccCCceeccCCccccccceeeecCCCCCCc
Q psy1870         163 SDCTDYQARRLNIRTEDG-------KFAHTLNGTACAIPRLLMALVETHQNQDGTVNIPECLQPFMFNKRIIGDTRGAPS  235 (264)
Q Consensus       163 s~~~D~qa~rl~i~y~~~-------~~~ht~~gtg~~v~Rll~alLE~~~~~~G~i~lP~~LaP~~~~~~~i~~~~~~~~  235 (264)
                      |||+||||||++|+|.+.       .|+||+||||||++|+|+|||||||++|| |+||++|+|||+|..+|+     |.
T Consensus       360 Snc~D~QaRRl~iryr~~~~~~~~~~~vHTLNgt~lA~~R~l~AiLEn~Q~~dg-i~iP~vL~pym~g~~~i~-----~~  433 (448)
T PLN02678        360 SNCTDYQSRRLEIRYGQKKSNEQTKQYVHLLNSTLTATERTLCCILENYQTEDG-VRVPEVLQPFMGGIEFLP-----FK  433 (448)
T ss_pred             cccccHhhhcccceecccccCCCCceeEEecCCchhHHHHHHHHHHHhCcCCCC-eECChhhhhhcCCCceec-----CC
Confidence            999999999999999842       49999999999999999999999999999 999999999999889996     45


Q ss_pred             ccccccccchHhhh
Q psy1870         236 LVKVKTGISKAKKK  249 (264)
Q Consensus       236 ~~~~~~~~~~~~~~  249 (264)
                      -+.+-+++||.||+
T Consensus       434 ~~~~~~~~~~~~~~  447 (448)
T PLN02678        434 KKPPAKGKGKKKKK  447 (448)
T ss_pred             CCcccccccccccC
Confidence            56666777777665

>PLN02320 seryl-tRNA synthetase Back     alignment and domain information
>KOG2509|consensus Back     alignment and domain information
>PRK05431 seryl-tRNA synthetase; Provisional Back     alignment and domain information
>COG0172 SerS Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>TIGR00414 serS seryl-tRNA synthetase Back     alignment and domain information
>cd00770 SerRS_core Seryl-tRNA synthetase (SerRS) class II core catalytic domain Back     alignment and domain information
>cd00779 ProRS_core_prok Prolyl-tRNA synthetase (ProRS) class II core catalytic domain Back     alignment and domain information
>cd00772 ProRS_core Prolyl-tRNA synthetase (ProRS) class II core catalytic domain Back     alignment and domain information
>PRK00960 seryl-tRNA synthetase; Provisional Back     alignment and domain information
>KOG2324|consensus Back     alignment and domain information
>cd00778 ProRS_core_arch_euk Prolyl-tRNA synthetase (ProRS) class II core catalytic domain Back     alignment and domain information
>PRK08661 prolyl-tRNA synthetase; Provisional Back     alignment and domain information
>TIGR00408 proS_fam_I prolyl-tRNA synthetase, family I Back     alignment and domain information
>TIGR00409 proS_fam_II prolyl-tRNA synthetase, family II Back     alignment and domain information
>PRK09194 prolyl-tRNA synthetase; Provisional Back     alignment and domain information
>TIGR00415 serS_MJ seryl-tRNA synthetase, Methanococcus jannaschii family Back     alignment and domain information
>PRK12325 prolyl-tRNA synthetase; Provisional Back     alignment and domain information
>PRK03991 threonyl-tRNA synthetase; Validated Back     alignment and domain information
>cd00771 ThrRS_core Threonyl-tRNA synthetase (ThrRS) class II core catalytic domain Back     alignment and domain information
>COG0442 ProS Prolyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PLN02837 threonine-tRNA ligase Back     alignment and domain information
>PF00587 tRNA-synt_2b: tRNA synthetase class II core domain (G, H, P, S and T) This Prosite entry contains all class II enzymes Back     alignment and domain information
>PRK04173 glycyl-tRNA synthetase; Provisional Back     alignment and domain information
>cd00670 Gly_His_Pro_Ser_Thr_tRS_core Gly_His_Pro_Ser_Thr_tRNA synthetase class II core domain Back     alignment and domain information
>PRK14799 thrS threonyl-tRNA synthetase; Provisional Back     alignment and domain information
>PLN02908 threonyl-tRNA synthetase Back     alignment and domain information
>PRK12444 threonyl-tRNA synthetase; Reviewed Back     alignment and domain information
>TIGR00418 thrS threonyl-tRNA synthetase Back     alignment and domain information
>PRK14894 glycyl-tRNA synthetase; Provisional Back     alignment and domain information
>PRK12305 thrS threonyl-tRNA synthetase; Reviewed Back     alignment and domain information
>COG0441 ThrS Threonyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PLN02734 glycyl-tRNA synthetase Back     alignment and domain information
>TIGR00389 glyS_dimeric glycyl-tRNA synthetase, dimeric type Back     alignment and domain information
>COG0423 GRS1 Glycyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG4163|consensus Back     alignment and domain information
>KOG1637|consensus Back     alignment and domain information
>PRK00413 thrS threonyl-tRNA synthetase; Reviewed Back     alignment and domain information
>cd00774 GlyRS-like_core Glycyl-tRNA synthetase (GlyRS)-like class II core catalytic domain Back     alignment and domain information
>PRK07080 hypothetical protein; Validated Back     alignment and domain information
>KOG2298|consensus Back     alignment and domain information
>cd00768 class_II_aaRS-like_core Class II tRNA amino-acyl synthetase-like catalytic core domain Back     alignment and domain information
>cd00773 HisRS-like_core Class II Histidinyl-tRNA synthetase (HisRS)-like catalytic core domain Back     alignment and domain information
>CHL00201 syh histidine-tRNA synthetase; Provisional Back     alignment and domain information
>TIGR00442 hisS histidyl-tRNA synthetase Back     alignment and domain information
>PRK00037 hisS histidyl-tRNA synthetase; Reviewed Back     alignment and domain information
>PRK09537 pylS pyrolysyl-tRNA synthetase; Reviewed Back     alignment and domain information
>COG0124 HisS Histidyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PLN02530 histidine-tRNA ligase Back     alignment and domain information
>PRK12420 histidyl-tRNA synthetase; Provisional Back     alignment and domain information
>PF01409 tRNA-synt_2d: tRNA synthetases class II core domain (F); InterPro: IPR002319 The aminoacyl-tRNA synthetases (6 Back     alignment and domain information
>PTZ00326 phenylalanyl-tRNA synthetase alpha chain; Provisional Back     alignment and domain information
>TIGR00443 hisZ_biosyn_reg ATP phosphoribosyltransferase, regulatory subunit Back     alignment and domain information
>COG0016 PheS Phenylalanyl-tRNA synthetase alpha subunit [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK12293 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional Back     alignment and domain information
>PRK04172 pheS phenylalanyl-tRNA synthetase subunit alpha; Provisional Back     alignment and domain information
>PLN02853 Probable phenylalanyl-tRNA synthetase alpha chain Back     alignment and domain information
>TIGR02367 PylS pyrrolysyl-tRNA synthetase Back     alignment and domain information
>PRK12295 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional Back     alignment and domain information
>PRK12292 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional Back     alignment and domain information
>TIGR00470 sepS O-phosphoseryl-tRNA(Cys) synthetase Back     alignment and domain information
>PLN02972 Histidyl-tRNA synthetase Back     alignment and domain information
>PRK00488 pheS phenylalanyl-tRNA synthetase subunit alpha; Validated Back     alignment and domain information
>cd00669 Asp_Lys_Asn_RS_core Asp_Lys_Asn_tRNA synthetase class II core domain Back     alignment and domain information
>PRK12421 ATP phosphoribosyltransferase regulatory subunit; Provisional Back     alignment and domain information
>PF13393 tRNA-synt_His: Histidyl-tRNA synthetase; PDB: 3HRI_E 3HRK_A 3LC0_A 1Z7N_A 1Z7M_D 3NET_A 1H4V_B 3OD1_A 4E51_B 3RAC_A Back     alignment and domain information
>COG0442 ProS Prolyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG1936|consensus Back     alignment and domain information
>TIGR00468 pheS phenylalanyl-tRNA synthetase, alpha subunit Back     alignment and domain information
>COG0173 AspS Aspartyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG2411|consensus Back     alignment and domain information
>PLN02788 phenylalanine-tRNA synthetase Back     alignment and domain information
>COG2024 Phenylalanyl-tRNA synthetase alpha subunit (archaeal type) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PLN02903 aminoacyl-tRNA ligase Back     alignment and domain information
>PF00152 tRNA-synt_2: tRNA synthetases class II (D, K and N) ; InterPro: IPR004364 The aminoacyl-tRNA synthetases (6 Back     alignment and domain information
>PRK09350 poxB regulator PoxA; Provisional Back     alignment and domain information
>TIGR00459 aspS_bact aspartyl-tRNA synthetase, bacterial type Back     alignment and domain information
>PRK12820 bifunctional aspartyl-tRNA synthetase/aspartyl/glutamyl-tRNA amidotransferase subunit C; Provisional Back     alignment and domain information
>PRK00476 aspS aspartyl-tRNA synthetase; Validated Back     alignment and domain information
>TIGR00469 pheS_mito phenylalanyl-tRNA synthetase, mitochondrial Back     alignment and domain information
>PLN02850 aspartate-tRNA ligase Back     alignment and domain information
>PRK06253 O-phosphoseryl-tRNA synthetase; Reviewed Back     alignment and domain information
>COG3705 HisZ ATP phosphoribosyltransferase involved in histidine biosynthesis [Amino acid transport and metabolism] Back     alignment and domain information
>PRK00484 lysS lysyl-tRNA synthetase; Reviewed Back     alignment and domain information
>cd00776 AsxRS_core Asx tRNA synthetase (AspRS/AsnRS) class II core domain Back     alignment and domain information
>cd02426 Pol_gamma_b_Cterm C-terminal domain of mitochondrial DNA polymerase gamma B subunit, which is required for processivity Back     alignment and domain information
>cd00775 LysRS_core Lys_tRNA synthetase (LysRS) class II core domain Back     alignment and domain information
>PRK12445 lysyl-tRNA synthetase; Reviewed Back     alignment and domain information
>PLN02502 lysyl-tRNA synthetase Back     alignment and domain information
>PTZ00385 lysyl-tRNA synthetase; Provisional Back     alignment and domain information
>PRK06462 asparagine synthetase A; Reviewed Back     alignment and domain information
>PRK03932 asnC asparaginyl-tRNA synthetase; Validated Back     alignment and domain information
>KOG0555|consensus Back     alignment and domain information
>PTZ00425 asparagine-tRNA ligase; Provisional Back     alignment and domain information
>PRK05159 aspC aspartyl-tRNA synthetase; Provisional Back     alignment and domain information
>PTZ00417 lysine-tRNA ligase; Provisional Back     alignment and domain information
>TIGR00458 aspS_arch aspartyl-tRNA synthetase, archaeal type Back     alignment and domain information
>cd00777 AspRS_core Asp tRNA synthetase (aspRS) class II core domain Back     alignment and domain information
>cd00496 PheRS_alpha_core Phenylalanyl-tRNA synthetase (PheRS) alpha chain catalytic core domain Back     alignment and domain information
>TIGR00457 asnS asparaginyl-tRNA synthetase Back     alignment and domain information
>TIGR00462 genX lysyl-tRNA synthetase-like protein GenX Back     alignment and domain information
>TIGR00499 lysS_bact lysyl-tRNA synthetase, eukaryotic and non-spirochete bacterial Back     alignment and domain information
>KOG2784|consensus Back     alignment and domain information
>PLN02221 asparaginyl-tRNA synthetase Back     alignment and domain information
>PTZ00401 aspartyl-tRNA synthetase; Provisional Back     alignment and domain information
>PLN02532 asparagine-tRNA synthetase Back     alignment and domain information
>PLN02603 asparaginyl-tRNA synthetase Back     alignment and domain information
>PRK02983 lysS lysyl-tRNA synthetase; Provisional Back     alignment and domain information
>cd00774 GlyRS-like_core Glycyl-tRNA synthetase (GlyRS)-like class II core catalytic domain Back     alignment and domain information
>PRK12294 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional Back     alignment and domain information
>COG2269 Truncated, possibly inactive, lysyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query264
1wle_A501 Crystal Structure Of Mammalian Mitochondrial Seryl- 1e-52
2dq0_A455 Crystal Structure Of Seryl-Trna Synthetase From Pyr 1e-34
2dq3_A425 Crystal Structure Of Aq_298 Length = 425 1e-30
3lsq_A484 Trypanosoma Brucei Seryl-Trna Synthetase Length = 4 5e-29
3vbb_A522 Crystal Structure Of Seryl-Trna Synthetase From Hum 1e-28
3qne_A485 Candida Albicans Seryl-Trna Synthetase Length = 485 2e-28
3qo5_A485 Crystal Structure Of The Seryl-Trna Synthetase From 2e-28
3err_A536 Microtubule Binding Domain From Mouse Cytoplasmic D 1e-25
1sry_A421 Refined Crystal Structure Of The Seryl-Trna Synthet 2e-25
>pdb|1WLE|A Chain A, Crystal Structure Of Mammalian Mitochondrial Seryl-Trna Synthetase Complexed With Seryl-Adenylate Length = 501 Back     alignment and structure 
Iteration: 1

 Score =  203 bits (516), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 104/226 (46%), Positives = 148/226 (65%), Gaps = 9/226 (3%)
Query: 11  CNSKINSKGERSQIYHLEPNYYGNGWCLSGTAEMGIARYLMNQTLPESQLPKQIAAMSKC 70
           C    N+K   SQIY+++P+ + +   L+GTAE+G+A Y M+ ++    LP ++   S C
Sbjct: 255 CGMTPNAKP--SQIYNIDPSRFED-LNLAGTAEVGLAGYFMDHSVAFRDLPIRMVCSSTC 311
Query: 71  YRAEISVVADEKGVYRVHCFTKIEMFGVTLP--EDSEKXXXXXXXXXXXXXGELGIHTRT 128
           YRAE     +  G+YRVH FTK+EMFGVT P  E S +              ELG+H R 
Sbjct: 312 YRAETDTGKEPWGLYRVHHFTKVEMFGVTGPGLEQSSELLEEFLSLQMEILTELGLHFRV 371
Query: 129 LNMGANELGAQAYKKYDVEAWMPGRKHWGELSSCSDCTDYQARRLNI--RTEDG--KFAH 184
           L+M   ELG  AY+K+D+EAWMPGR  +GE++S S+CTD+Q+RRL+I  +TE G  +FAH
Sbjct: 372 LDMPTQELGLPAYRKFDIEAWMPGRGRFGEVTSASNCTDFQSRRLHIMFQTEAGELQFAH 431
Query: 185 TLNGTACAIPRLLMALVETHQNQDGTVNIPECLQPFMFNKRIIGDT 230
           T+N T CA+PRLL+AL+E++Q +DG+V +P  LQP++   RI   T
Sbjct: 432 TVNATGCAVPRLLIALLESYQQKDGSVLVPPALQPYLGTDRITTPT 477
>pdb|2DQ0|A Chain A, Crystal Structure Of Seryl-Trna Synthetase From Pyrococcus Horikoshii Complexed With A Seryl-Adenylate Analog Length = 455 Back     alignment and structure
>pdb|2DQ3|A Chain A, Crystal Structure Of Aq_298 Length = 425 Back     alignment and structure
>pdb|3LSQ|A Chain A, Trypanosoma Brucei Seryl-Trna Synthetase Length = 484 Back     alignment and structure
>pdb|3VBB|A Chain A, Crystal Structure Of Seryl-Trna Synthetase From Human At 2.9 Angstroms Length = 522 Back     alignment and structure
>pdb|3QNE|A Chain A, Candida Albicans Seryl-Trna Synthetase Length = 485 Back     alignment and structure
>pdb|3QO5|A Chain A, Crystal Structure Of The Seryl-Trna Synthetase From Candida Albicans Length = 485 Back     alignment and structure
>pdb|3ERR|A Chain A, Microtubule Binding Domain From Mouse Cytoplasmic Dynein As A Fusion With Seryl-Trna Synthetase Length = 536 Back     alignment and structure
>pdb|1SRY|A Chain A, Refined Crystal Structure Of The Seryl-Trna Synthetase From Thermus Thermophilus At 2.5 Angstroms Resolution Length = 421 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query264
1wle_A501 Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bo 5e-86
2dq0_A455 Seryl-tRNA synthetase; coiled-coil, homodimer, str 3e-74
1ses_A421 Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A 6e-71
3vbb_A522 Seryl-tRNA synthetase, cytoplasmic; coiled-coil, l 8e-70
3qne_A485 Seryl-tRNA synthetase, cytoplasmic; amino acid bio 3e-69
3err_A536 Fusion protein of microtubule binding domain from 9e-68
3lss_A484 Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, 5e-66
2dq3_A425 Seryl-tRNA synthetase; coiled-coil, homodimer, str 1e-60
3mf2_A346 BLL0957 protein; aminoacyl-tRNA synthetase, seryl- 1e-47
2cja_A522 Seryl-tRNA synthetase; ligase, zinc ION; HET: MSE 7e-41
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-13
1ati_A505 Glycyl-tRNA synthetase; protein biosynthesis, liga 1e-06
3ikl_A459 DNA polymerase subunit gamma-2, mitochondrial; tra 5e-06
1g5h_A454 Mitochondrial DNA polymerase accessory subunit; in 1e-04
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus} Length = 501 Back     alignment and structure
 Score =  264 bits (676), Expect = 5e-86
 Identities = 104/216 (48%), Positives = 147/216 (68%), Gaps = 7/216 (3%)

Query: 18  KGERSQIYHLEPNYYGNGWCLSGTAEMGIARYLMNQTLPESQLPKQIAAMSKCYRAEISV 77
             + SQIY+++P        L+GTAE+G+A Y M+ ++    LP ++   S CYRAE   
Sbjct: 260 NAKPSQIYNIDP-SRFEDLNLAGTAEVGLAGYFMDHSVAFRDLPIRMVCSSTCYRAETDT 318

Query: 78  VADEKGVYRVHCFTKIEMFGVTLP--EDSEKQLEQFLQFEESLFGELGIHTRTLNMGANE 135
             +  G+YRVH FTK+EMFGVT P  E S + LE+FL  +  +  ELG+H R L+M   E
Sbjct: 319 GKEPWGLYRVHHFTKVEMFGVTGPGLEQSSELLEEFLSLQMEILTELGLHFRVLDMPTQE 378

Query: 136 LGAQAYKKYDVEAWMPGRKHWGELSSCSDCTDYQARRLNIR--TEDGK--FAHTLNGTAC 191
           LG  AY+K+D+EAWMPGR  +GE++S S+CTD+Q+RRL+I   TE G+  FAHT+N T C
Sbjct: 379 LGLPAYRKFDIEAWMPGRGRFGEVTSASNCTDFQSRRLHIMFQTEAGELQFAHTVNATGC 438

Query: 192 AIPRLLMALVETHQNQDGTVNIPECLQPFMFNKRII 227
           A+PRLL+AL+E++Q +DG+V +P  LQP++   RI 
Sbjct: 439 AVPRLLIALLESYQQKDGSVLVPPALQPYLGTDRIT 474
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A Length = 455 Back     alignment and structure
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A Length = 421 Back     alignment and structure
>3vbb_A Seryl-tRNA synthetase, cytoplasmic; coiled-coil, ligase; 2.89A {Homo sapiens} Length = 522 Back     alignment and structure
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A Length = 485 Back     alignment and structure
>3err_A Fusion protein of microtubule binding domain from mouse cytoplasmic dynein and seryl-tRNA...; coiled coil, ligase; HET: AMP; 2.27A {Mus musculus} Length = 536 Back     alignment and structure
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A* Length = 484 Back     alignment and structure
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus} Length = 425 Back     alignment and structure
>3mf2_A BLL0957 protein; aminoacyl-tRNA synthetase, seryl-tRNA synthetase, zinc ION, amino acid:[carrier protein] ligase; HET: AMP; 2.15A {Bradyrhizobium japonicum} PDB: 3mey_A* 3mf1_A* 3pzc_A* Length = 346 Back     alignment and structure
>2cja_A Seryl-tRNA synthetase; ligase, zinc ION; HET: MSE ATP; 2.2A {Methanosarcina barkeri} PDB: 2cim_A* 2cj9_A* 2cjb_A Length = 522 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1ati_A Glycyl-tRNA synthetase; protein biosynthesis, ligase, aminoacyl-tRNA SYN; 2.75A {Thermus thermophilus} SCOP: c.51.1.1 d.104.1.1 PDB: 1b76_A* 1ggm_A* Length = 505 Back     alignment and structure
>3ikl_A DNA polymerase subunit gamma-2, mitochondrial; transferase; HET: DNA; 3.10A {Homo sapiens} Length = 459 Back     alignment and structure
>1g5h_A Mitochondrial DNA polymerase accessory subunit; intermolecular four helix bundle, DNA binding protein; 1.95A {Mus musculus} SCOP: c.51.1.1 d.104.1.1 PDB: 1g5i_A 2g4c_A* 3ikm_B* Length = 454 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query264
3vbb_A522 Seryl-tRNA synthetase, cytoplasmic; coiled-coil, l 100.0
3lss_A484 Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, 100.0
3qne_A485 Seryl-tRNA synthetase, cytoplasmic; amino acid bio 100.0
3err_A536 Fusion protein of microtubule binding domain from 100.0
1wle_A501 Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bo 100.0
1ses_A421 Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A 100.0
2dq0_A455 Seryl-tRNA synthetase; coiled-coil, homodimer, str 100.0
2dq3_A425 Seryl-tRNA synthetase; coiled-coil, homodimer, str 100.0
3mf2_A346 BLL0957 protein; aminoacyl-tRNA synthetase, seryl- 100.0
2cja_A522 Seryl-tRNA synthetase; ligase, zinc ION; HET: MSE 100.0
3ial_A 518 Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, 100.0
4hvc_A 519 Bifunctional glutamate/proline--tRNA ligase; ligas 100.0
1nj1_A 501 PROR, proline-tRNA synthetase, proline--tRNA ligas 100.0
3ikl_A459 DNA polymerase subunit gamma-2, mitochondrial; tra 100.0
1nj8_A 459 Proline-tRNA synthetase, proline--tRNA ligase; cla 100.0
1hc7_A 477 Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, 100.0
1qf6_A642 THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, m 100.0
3uh0_A460 Threonyl-tRNA synthetase, mitochondrial; threonine 100.0
1ati_A505 Glycyl-tRNA synthetase; protein biosynthesis, liga 100.0
2i4l_A458 Proline-tRNA ligase; alpha beta; 2.00A {Rhodopseud 100.0
2j3l_A 572 Prolyl-tRNA synthetase; class II aminoacyl- T synt 100.0
1evl_A401 Threonyl-tRNA synthetase; amino acid recognition, 100.0
1g5h_A454 Mitochondrial DNA polymerase accessory subunit; in 99.97
1nyr_A645 Threonyl-tRNA synthetase 1; ATP, threonine, ligase 99.97
3a32_A471 Probable threonyl-tRNA synthetase 1; aeropyrum per 99.94
2zt5_A 693 Glycyl-tRNA synthetase; ligase, AP4A, glycine, ATP 99.94
1qe0_A 420 Histidyl-tRNA synthetase; class II tRNA synthetase 99.7
1h4v_B 421 Histidyl-tRNA synthetase; class IIA aminoacyl-tRNA 99.59
1wu7_A 434 Histidyl-tRNA synthetase; ligase, structural genom 99.55
1htt_A 423 Histidyl-tRNA synthetase; complex (tRNA synthetase 99.53
3dsq_A288 Pyrrolysyl-tRNA synthetase; homodimer, aminoacyl-t 99.52
4e51_A 467 Histidine--tRNA ligase; seattle structural genomic 99.47
1z7m_A344 ATP phosphoribosyltransferase regulatory subunit; 99.43
3rac_A373 Histidine-tRNA ligase; structural genomics, PSI-bi 99.29
3od1_A 400 ATP phosphoribosyltransferase regulatory subunit; 99.25
3lc0_A 456 Histidyl-tRNA synthetase; tRNA-ligase, aminoacyl-t 99.13
4g84_A 464 Histidine--tRNA ligase, cytoplasmic; synthetase; 2 99.0
4g85_A 517 Histidine-tRNA ligase, cytoplasmic; synthetase; 3. 98.98
3net_A 465 Histidyl-tRNA synthetase; aminoacyl-tRNA synthetas 98.96
1usy_A275 ATP phosphoribosyltransferase regulatory subunit; 98.77
3qtc_A290 Pyrrolysyl-tRNA synthetase; aminoacyl-tRNA synthet 98.49
1nnh_A294 Asparaginyl-tRNA synthetase-related peptide; struc 98.17
3l4g_A508 Phenylalanyl-tRNA synthetase alpha chain; aminoacy 98.06
1b7y_A350 Phers, protein (phenylalanyl-tRNA synthetase); enz 97.66
2du3_A 534 O-phosphoseryl-tRNA synthetase; alpha4 tetramer, l 97.46
3pco_A327 Phenylalanyl-tRNA synthetase, alpha subunit; amino 96.89
1wyd_A429 Hypothetical aspartyl-tRNA synthetase; archaea, LI 96.66
1x54_A434 Asparaginyl-tRNA synthetase; aminoacyl-tRNA synthe 96.64
2odr_B 648 Phosphoseryl-tRNA synthetase; phosphoserine tRNA s 96.62
2odr_A 665 Phosphoseryl-tRNA synthetase; phosphoserine tRNA s 96.6
2odr_D 685 Phosphoseryl-tRNA synthetase; phosphoserine tRNA s 96.58
2odr_C 701 Phosphoseryl-tRNA synthetase; phosphoserine tRNA s 96.53
2du7_A 549 O-phosphoseryl-tRNA synthetase; alpha4 tetramer, l 96.5
3a74_A493 Lysyl-tRNA synthetase; aminoacyl tRNA synthetase, 96.49
2rhq_A294 Phenylalanyl-tRNA synthetase alpha chain; heterote 96.4
1eov_A487 ASPRS, aspartyl-tRNA synthetase; aminoacyl tRNA sy 96.08
1e1o_A504 Lysyl-tRNA synthetase, heat inducible; ligase, ami 96.05
3a5y_A345 GENX, putative lysyl-tRNA synthetase; aminoacyl-tR 96.05
3nem_A438 Aspartyl-tRNA synthetase; rossmann fold, OB fold, 95.84
1l0w_A 580 Aspartyl-tRNA synthetase; space-grown crystal, dim 95.51
1c0a_A 585 Aspartyl tRNA synthetase; protein-RNA complex, lig 95.5
1n9w_A422 Aspartyl-tRNA synthetase 2; biosynthetic protein; 95.48
4ah6_A 617 Aspartate--tRNA ligase, mitochondrial; 3.70A {Homo 95.46
3m4p_A456 Ehasnrs, asparaginyl-tRNA synthetase, putative; am 95.38
2xgt_A435 Asparaginyl-tRNA synthetase, cytoplasmic; ligase, 95.12
3bju_A521 Lysyl-tRNA synthetase; aminoacyl-tRNA synthetase, 94.71
4ex5_A529 Lysine--tRNA ligase; structural genomics, niaid, n 94.58
3i7f_A548 Aspartyl-tRNA synthetase; tRNA ligase, APO, ATP-bi 93.33
3cmq_A415 Phenylalanyl-tRNA synthetase, mitochondrial; class 86.15
>3vbb_A Seryl-tRNA synthetase, cytoplasmic; coiled-coil, ligase; 2.89A {Homo sapiens} Back     alignment and structure
Probab=100.00  E-value=2e-67  Score=508.55  Aligned_cols=232  Identities=35%  Similarity=0.530  Sum_probs=208.8

Q ss_pred             chhhhhhcCCCCCCCCCceEEeecCC-------CCCceEEeCCchHHHHHHHhccccCCCCCcceEEEecceeccCc-cC
Q psy1870           6 CNALECNSKINSKGERSQIYHLEPNY-------YGNGWCLSGTAEMGIARYLMNQTLPESQLPKQIAAMSKCYRAEI-SV   77 (264)
Q Consensus         6 ~~~l~~~~G~~~~~~~~~ly~i~~~~-------~~~~~~L~pTaE~~i~~l~~~~~~syr~LPl~l~q~s~~fR~E~-s~   77 (264)
                      ...+|++||+++.+ .++||++++++       .++++||+||+|++++++|+++++||++||++++|+|+|||+|+ |+
T Consensus       230 ~~el~~~sG~l~~f-~eemy~v~~~g~~~~~~~~~~~l~L~PTaE~~l~~l~~~ei~s~~dLPlr~~~~s~cFR~Eags~  308 (522)
T 3vbb_A          230 RKEVMQEVAQLSQF-DEELYKVIGKGSEKSDDNSYDEKYLIATSEQPIAALHRDEWLRPEDLPIKYAGLSTCFRQEVGSH  308 (522)
T ss_dssp             EHHHHHHHSCCC-C-CSCCCEEC------------CCEEECSSTHHHHHTTSTTCEECTTTCCEEEEEEEEEECSCCCC-
T ss_pred             chHHHhhcCCcccC-cccceEeecCCccccccccCcceeEcccCcHHHHHHHhhhecccccCCeeEEEecccccCCCCcC
Confidence            35689999999988 88999998652       14689999999999999999999999999999999999999999 56


Q ss_pred             CccCCCceeeEEEEEeeEEEEcCcch--HHHHHHHHHHHHHHHHHHhCCceEEEEccCCCcCchhhcccceeeecCcccc
Q psy1870          78 VADEKGVYRVHCFTKIEMFGVTLPED--SEKQLEQFLQFEESLFGELGIHTRTLNMGANELGAQAYKKYDVEAWMPGRKH  155 (264)
Q Consensus        78 g~~~~GL~R~reF~~~E~~~f~~pe~--s~~~~~~~~~~~~~i~~~Lglpyr~v~~~~~dl~~~a~~~ydiE~w~p~~~~  155 (264)
                      |++++||+|+|||+|+|+|+||+|++  |+++|+++++.+++||+.||||||++.++++|||++++++||+|+|+|++++
T Consensus       309 GrdtrGL~RvhQF~kvE~~~f~~pe~e~s~~e~e~ml~~~e~il~~LGLpyrvv~l~tgdlg~~asktyDiE~w~P~~~~  388 (522)
T 3vbb_A          309 GRDTRGIFRVHQFEKIEQFVYSSPHDNKSWEMFEEMITTAEEFYQSLGIPYHIVNIVSGSLNHAASKKLDLEAWFPGSGA  388 (522)
T ss_dssp             ---CCCSSSCSEEEEEEEEEEECSSTTHHHHHHHHHHHHHHHHHHHTTCCEEEEECCGGGCCTTCSEEEEEEEEETTTTE
T ss_pred             CccCCCcceeeeeEEEEEEEEeCCChHHHHHHHHHHHHHHHHHHHHcCCceEEEEcCCccCCCchhheeceeEecCCCCc
Confidence            89999999999999999999999987  9999999999999999999999999999999999999999999999999999


Q ss_pred             cceeEecCCccchhhcccceeecCC-------CceeEEecccccHhHHHHHHHHhccccCCceeccCCccccccce--ee
Q psy1870         156 WGELSSCSDCTDYQARRLNIRTEDG-------KFAHTLNGTACAIPRLLMALVETHQNQDGTVNIPECLQPFMFNK--RI  226 (264)
Q Consensus       156 ~~Ev~s~s~~~D~qa~rl~i~y~~~-------~~~ht~~gtg~~v~Rll~alLE~~~~~~G~i~lP~~LaP~~~~~--~~  226 (264)
                      |+||+|||||+|||++|++|+|.+.       .|+||+||||+|++|+|+|||||||++|| |+||+.|+|||+|.  .+
T Consensus       389 y~EIsScSnc~DyqArr~~iry~~~~~~~~k~~~vhtlNgs~lav~R~l~AiLEn~q~~dG-i~iP~~L~Py~~~~~~~~  467 (522)
T 3vbb_A          389 FRELVSCSNCTDYQARRLRIRYGQTKKMMDKVEFVHMLNATMCATTRTICAILENYQTEKG-ITVPEKLKEFMPPGLQEL  467 (522)
T ss_dssp             EEEEEEEEECTTHHHHHHTCEESCC---CCCCCBCEEEEEEEEEHHHHHHHHHHHHBCSSE-EECCHHHHTTSCTTSSSE
T ss_pred             eeEEEEecCCCCCccceeeeEEccccccCCCeeeceEEeccchHHHHHHHHHHHhCCCCCC-eecChHhcCeeCCCcceE
Confidence            9999999999999999999999752       49999999999999999999999999999 99999999999865  89


Q ss_pred             ecCCCCCCccccc
Q psy1870         227 IGDTRGAPSLVKV  239 (264)
Q Consensus       227 i~~~~~~~~~~~~  239 (264)
                      |+-.+..|...-.
T Consensus       468 ip~~~~~~~~~~~  480 (522)
T 3vbb_A          468 IPFVKPAPIEQEP  480 (522)
T ss_dssp             EECCSCCCC----
T ss_pred             eecCCCCCcchhH
Confidence            9988888874333
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A* Back     alignment and structure
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A Back     alignment and structure
>3err_A Fusion protein of microtubule binding domain from mouse cytoplasmic dynein and seryl-tRNA...; coiled coil, ligase; HET: AMP; 2.27A {Mus musculus} PDB: 3j1t_A 3j1u_A Back     alignment and structure
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus} Back     alignment and structure
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A Back     alignment and structure
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A Back     alignment and structure
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus} Back     alignment and structure
>3mf2_A BLL0957 protein; aminoacyl-tRNA synthetase, seryl-tRNA synthetase, zinc ION, amino acid:[carrier protein] ligase; HET: AMP; 2.15A {Bradyrhizobium japonicum} PDB: 3mey_A* 3mf1_A* 3pzc_A* Back     alignment and structure
>2cja_A Seryl-tRNA synthetase; ligase, zinc ION; HET: MSE ATP; 2.2A {Methanosarcina barkeri} PDB: 2cim_A* 2cj9_A* 2cjb_A Back     alignment and structure
>3ial_A Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, prors, cysrs, RS, translation, ATP-binding, nucleotide-binding; HET: PR8; 2.20A {Giardia lamblia atcc 50803} Back     alignment and structure
>4hvc_A Bifunctional glutamate/proline--tRNA ligase; ligase-ligase inhibitor complex; HET: ANP HFG; 2.00A {Homo sapiens} Back     alignment and structure
>1nj1_A PROR, proline-tRNA synthetase, proline--tRNA ligase; protein-aminoacyladenylate complex class-II tRNA synthetase,; HET: 5CA; 2.55A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.51.1.1 d.68.5.1 d.104.1.1 PDB: 1nj2_A 1nj5_A* 1nj6_A* Back     alignment and structure
>3ikl_A DNA polymerase subunit gamma-2, mitochondrial; transferase; HET: DNA; 3.10A {Homo sapiens} Back     alignment and structure
>1nj8_A Proline-tRNA synthetase, proline--tRNA ligase; class-II tRNA synthetase; 3.20A {Methanocaldococcus jannaschii} SCOP: c.51.1.1 d.68.5.1 d.104.1.1 Back     alignment and structure
>1hc7_A Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP + L-proline + tRNA(Pro) AMP + PPI + L-prolyl-tRNA(Pro); 2.43A {Thermus thermophilus} SCOP: c.51.1.1 d.68.5.1 d.104.1.1 PDB: 1h4q_A* 1h4t_A 1h4s_A Back     alignment and structure
>1qf6_A THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, mRNA, aminoacylati translational regulation, protein/RNA, ligase-RNA complex; HET: H2U AET G7M 5MU PSU AMP; 2.90A {Escherichia coli} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1 Back     alignment and structure
>3uh0_A Threonyl-tRNA synthetase, mitochondrial; threonine tRNA, threonyl ADE threonyl sulfamoyl adenylate; HET: TSB; 2.00A {Saccharomyces cerevisiae} PDB: 3ugt_A 3ugq_A* 4eo4_A* Back     alignment and structure
>1ati_A Glycyl-tRNA synthetase; protein biosynthesis, ligase, aminoacyl-tRNA SYN; 2.75A {Thermus thermophilus} SCOP: c.51.1.1 d.104.1.1 PDB: 1b76_A* 1ggm_A* Back     alignment and structure
>2i4l_A Proline-tRNA ligase; alpha beta; 2.00A {Rhodopseudomonas palustris} PDB: 2i4m_A* 2i4n_A* 2i4o_A* Back     alignment and structure
>2j3l_A Prolyl-tRNA synthetase; class II aminoacyl- T synthetase, editing, translation; HET: P5A; 2.3A {Enterococcus faecalis} PDB: 2j3m_A* Back     alignment and structure
>1evl_A Threonyl-tRNA synthetase; amino acid recognition, zinc ION, adenylate analog, deletion mutant, ligase; HET: TSB; 1.55A {Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB: 1evk_A* 1fyf_A* 1kog_A* Back     alignment and structure
>1g5h_A Mitochondrial DNA polymerase accessory subunit; intermolecular four helix bundle, DNA binding protein; 1.95A {Mus musculus} SCOP: c.51.1.1 d.104.1.1 PDB: 1g5i_A 2g4c_A* 3ikm_B* Back     alignment and structure
>1nyr_A Threonyl-tRNA synthetase 1; ATP, threonine, ligase; HET: ATP; 2.80A {Staphylococcus aureus} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1 PDB: 1nyq_A* Back     alignment and structure
>3a32_A Probable threonyl-tRNA synthetase 1; aeropyrum pernix K1, protein biosynthesis, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; 2.30A {Aeropyrum pernix} PDB: 3a31_A Back     alignment and structure
>2zt5_A Glycyl-tRNA synthetase; ligase, AP4A, glycine, ATP, Gly-AMP, aminoacyl-tRNA synthetase, ATP-binding, charcot-marie-tooth disease, disease mutation; HET: B4P; 2.50A {Homo sapiens} PDB: 2pme_A* 2zt6_A* 2zt7_A* 2zt8_A* 2zxf_A* 2pmf_A 2q5h_A 2q5i_A Back     alignment and structure
>1qe0_A Histidyl-tRNA synthetase; class II tRNA synthetase, beta sheet, ligase; 2.70A {Staphylococcus aureus} SCOP: c.51.1.1 d.104.1.1 Back     alignment and structure
>1h4v_B Histidyl-tRNA synthetase; class IIA aminoacyl-tRNA synthetase, ATP + L-histidine tRNA(His)-> AMP + PPI + L-histidyl-tRNA(His); 2.4A {Thermus thermophilus} SCOP: c.51.1.1 d.104.1.1 PDB: 1ady_A* 1adj_A Back     alignment and structure
>1wu7_A Histidyl-tRNA synthetase; ligase, structural genomics, dimer; 2.40A {Thermoplasma acidophilum} SCOP: c.51.1.1 d.104.1.1 Back     alignment and structure
>1htt_A Histidyl-tRNA synthetase; complex (tRNA synthetase/His-adenylate), aminoacyl-tRNA synthase, ligase; HET: HIS AMP; 2.60A {Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB: 1kmm_A* 1kmn_A* 2el9_A* Back     alignment and structure
>3dsq_A Pyrrolysyl-tRNA synthetase; homodimer, aminoacyl-tRNA synthetase, ligase; 2.10A {Desulfitobacterium hafniense} PDB: 2znj_A 2zni_A Back     alignment and structure
>4e51_A Histidine--tRNA ligase; seattle structural genomics center for infectious disease, S aminoacylation, tRNA activation, charged tRNA; HET: HIS; 2.65A {Burkholderia thailandensis} Back     alignment and structure
>1z7m_A ATP phosphoribosyltransferase regulatory subunit; ATP-PRT, histidine biosynthesis, hiszg, alloste evolution; 2.90A {Lactococcus lactis} SCOP: d.104.1.1 PDB: 1z7n_A* Back     alignment and structure
>3rac_A Histidine-tRNA ligase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, PSI-BIO; 2.30A {Alicyclobacillus acidocaldarius subsp} Back     alignment and structure
>3od1_A ATP phosphoribosyltransferase regulatory subunit; structural genomics, PSI-2, protein structure initiative; 1.97A {Bacillus halodurans} Back     alignment and structure
>3lc0_A Histidyl-tRNA synthetase; tRNA-ligase, aminoacyl-tRNA synthetase, ligase, structural G medical structural genomics of pathogenic protozoa; HET: HIS; 1.80A {Trypanosoma cruzi} PDB: 3hrk_A* 3hri_A Back     alignment and structure
>4g84_A Histidine--tRNA ligase, cytoplasmic; synthetase; 2.40A {Homo sapiens} Back     alignment and structure
>4g85_A Histidine-tRNA ligase, cytoplasmic; synthetase; 3.11A {Homo sapiens} Back     alignment and structure
>3net_A Histidyl-tRNA synthetase; aminoacyl-tRNA synthetase, ligase, structural genomics, PSI- nostoc, protein structure initiative; 2.70A {Nostoc SP} Back     alignment and structure
>1usy_A ATP phosphoribosyltransferase regulatory subunit; aminoacyl-tRNA synthetase; HET: HIS; 2.52A {Thermotoga maritima} SCOP: d.104.1.1 PDB: 1usy_C* Back     alignment and structure
>3qtc_A Pyrrolysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP B O-methyl tyrosine binding, magnesium binding, aminoacylatio esterification; HET: 0A1 ANP; 1.75A {Methanosarcina mazei} PDB: 2q7e_A* 2q7g_A* 2q7h_A* 2zim_A* 2zin_A* 2e3c_A* 2zcd_A* 2zce_A* 2zio_A* 3vqv_A* 3vqw_A* 3vqx_A* 3vqy_A* Back     alignment and structure
>1nnh_A Asparaginyl-tRNA synthetase-related peptide; structural genomics, PSI, protein structure initiative, southeast COLL for structural genomics; 1.65A {Pyrococcus furiosus} SCOP: d.104.1.1 PDB: 3p8t_A 3p8v_A 3p8y_A 3reu_A* 3rex_A* 3rl6_A* Back     alignment and structure
>3l4g_A Phenylalanyl-tRNA synthetase alpha chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix acetylation, aminoacyl-tRNA synthetase; HET: PHE; 3.30A {Homo sapiens} Back     alignment and structure
>1b7y_A Phers, protein (phenylalanyl-tRNA synthetase); enzyme, alpha/beta homodimer, ligase; HET: FYA; 2.50A {Thermus thermophilus} SCOP: d.104.1.1 PDB: 1b70_A* 1eiy_A 1jjc_A* 1pys_A 2iy5_A* 3hfz_A* 3teh_A* 2aly_A* 2akw_A* 2amc_A* Back     alignment and structure
>2du3_A O-phosphoseryl-tRNA synthetase; alpha4 tetramer, ligase/RNA complex; HET: SEP; 2.60A {Archaeoglobus fulgidus} PDB: 2du4_A 2du5_A* 2du6_A* Back     alignment and structure
>3pco_A Phenylalanyl-tRNA synthetase, alpha subunit; aminoacylation, tRNA-binding, DNA-binding domain, four-helix aminoacyl-tRNA synthetase, ATP-binding; HET: PHE AMP; 3.02A {Escherichia coli} Back     alignment and structure
>1wyd_A Hypothetical aspartyl-tRNA synthetase; archaea, LIGA; HET: EPE; 2.30A {Sulfolobus tokodaii} Back     alignment and structure
>1x54_A Asparaginyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics, ligase; HET: 4AD; 1.45A {Pyrococcus horikoshii} PDB: 1x55_A* 1x56_A Back     alignment and structure
>2odr_B Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis} Back     alignment and structure
>2odr_A Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis} Back     alignment and structure
>2odr_D Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis} Back     alignment and structure
>2odr_C Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis} Back     alignment and structure
>2du7_A O-phosphoseryl-tRNA synthetase; alpha4 tetramer, ligase, structural genomics, NPPSFA; 3.60A {Methanocaldococcus jannaschii} Back     alignment and structure
>3a74_A Lysyl-tRNA synthetase; aminoacyl tRNA synthetase, ligase, protein biosynthesis, AMI tRNA synthetase, ATP-binding, magnesium; HET: B4P LYN; 1.80A {Geobacillus stearothermophilus} PDB: 3e9h_A* 3e9i_A* Back     alignment and structure
>2rhq_A Phenylalanyl-tRNA synthetase alpha chain; heterotetramer, phenylalanine, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: GAX; 2.20A {Staphylococcus haemolyticus} PDB: 2rhs_A* Back     alignment and structure
>1eov_A ASPRS, aspartyl-tRNA synthetase; aminoacyl tRNA synthetase, tRNA ligase, APO-enzyme, OB-fold,; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.1 d.104.1.1 PDB: 1asy_A* 1asz_A* Back     alignment and structure
>1e1o_A Lysyl-tRNA synthetase, heat inducible; ligase, aminoacyl-tRNA synthetase, protein biosynthesis; HET: LYS; 2.12A {Escherichia coli} SCOP: b.40.4.1 d.104.1.1 PDB: 1e1t_A* 1e22_A* 1e24_A* 1lyl_A 1bbu_A* 1bbw_A 1krs_A 1krt_A Back     alignment and structure
>3a5y_A GENX, putative lysyl-tRNA synthetase; aminoacyl-tRNA synthetase paralog, translation, lysyl- synthetase, lysyladenylate analog; HET: KAA; 1.90A {Escherichia coli} PDB: 3a5z_A* 3g1z_A* Back     alignment and structure
>3nem_A Aspartyl-tRNA synthetase; rossmann fold, OB fold, ligase; HET: AMO ATP; 1.89A {Thermococcus kodakarensis} PDB: 3nel_A* 3nen_A 1b8a_A* Back     alignment and structure
>1l0w_A Aspartyl-tRNA synthetase; space-grown crystal, dimeric enzyme, flexible domains, ligase; 2.01A {Thermus thermophilus} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1efw_A* 1g51_A Back     alignment and structure
>1c0a_A Aspartyl tRNA synthetase; protein-RNA complex, ligase/RNA complex; HET: 4SU H2U QUO G7M 5MU PSU AMP AMO; 2.40A {Escherichia coli} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1il2_A* 1eqr_A* Back     alignment and structure
>1n9w_A Aspartyl-tRNA synthetase 2; biosynthetic protein; 2.30A {Thermus thermophilus} SCOP: b.40.4.1 d.104.1.1 PDB: 3kfu_A* Back     alignment and structure
>4ah6_A Aspartate--tRNA ligase, mitochondrial; 3.70A {Homo sapiens} Back     alignment and structure
>3m4p_A Ehasnrs, asparaginyl-tRNA synthetase, putative; aminoacyl-tRNA synthetase, tRNA ligase, AARS, translation, ATP-binding, nucleotide-binding; HET: 4AD; 2.83A {Entamoeba histolytica} PDB: 3m4q_A Back     alignment and structure
>2xgt_A Asparaginyl-tRNA synthetase, cytoplasmic; ligase, ATP-binding, protein biosynthesis; HET: NSS; 1.90A {Brugia malayi} PDB: 2xti_A* Back     alignment and structure
>3bju_A Lysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP- binding, cytoplasm, ligase, nucleotide-binding, phosphoprotein, polymorphism; HET: LYS ATP; 2.31A {Homo sapiens} Back     alignment and structure
>4ex5_A Lysine--tRNA ligase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LYS; 2.40A {Burkholderia thailandensis} Back     alignment and structure
>3i7f_A Aspartyl-tRNA synthetase; tRNA ligase, APO, ATP-binding, aminoacyl-tRNA synthetase, LI nucleotide-binding, protein biosynthesis; 2.80A {Entamoeba histolytica} Back     alignment and structure
>3cmq_A Phenylalanyl-tRNA synthetase, mitochondrial; classii aarss fold, RRM domain, RNA recogntion, aminoacyl-tRNA synthetase, ATP-binding, ligase; HET: FA5; 2.20A {Homo sapiens} PDB: 3hfv_A* 3teg_A* 3tup_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 264
d1seta2311 d.104.1.1 (A:111-421) Seryl-tRNA synthetase (SerRS 1e-40
d1g5ha2290 d.104.1.1 (A:41-330) The aaRS-like accessory subun 2e-24
d1nj1a3265 d.104.1.1 (A:19-283) Prolyl-tRNA synthetase (ProRS 2e-13
d1nj8a3268 d.104.1.1 (A:0-267) Prolyl-tRNA synthetase (ProRS) 3e-13
d1hc7a2272 d.104.1.1 (A:5-276) Prolyl-tRNA synthetase (ProRS) 1e-11
d1atia2394 d.104.1.1 (A:1-394) Glycyl-tRNA synthetase (GlyRS) 1e-05
d1b76a2331 d.104.1.1 (A:1-394) Glycyl-tRNA synthetase (GlyRS) 0.004
>d1seta2 d.104.1.1 (A:111-421) Seryl-tRNA synthetase (SerRS) {Thermus thermophilus, strain hb27 [TaxId: 274]} Length = 311 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Class II aaRS and biotin synthetases
superfamily: Class II aaRS and biotin synthetases
family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain
domain: Seryl-tRNA synthetase (SerRS)
species: Thermus thermophilus, strain hb27 [TaxId: 274]

 Score =  140 bits (353), Expect = 1e-40
 Identities = 66/216 (30%), Positives = 109/216 (50%), Gaps = 7/216 (3%)

Query: 18  KGERSQIYHLEPNYYGNGWCLSGTAEMGIARYLMNQTLPESQLPKQIAAMSKCYRAEISV 77
            G                  L+GTAE+ +      + LP   LP + A  +  +R+E   
Sbjct: 92  TGHFPAYRDQVWAIAETDLYLTGTAEVVLNALHSGEILPYEALPLRYAGYAPAFRSEAGS 151

Query: 78  VA-DEKGVYRVHCFTKIEMFGVTLP--EDSEKQLEQFLQFEESLFGELGIHTRTLNMGAN 134
              D +G+ RVH F K+E + +T    E S++  ++ L+  E +   L +  R + +   
Sbjct: 152 FGKDVRGLMRVHQFHKVEQYVLTEASLEASDRAFQELLENAEEILRLLELPYRLVEVATG 211

Query: 135 ELGAQAYKKYDVEAWMPGRKHWGELSSCSDCTDYQARRLNIRTEDG----KFAHTLNGTA 190
           ++G   +++ D+E ++P    + E  SCS   D+QARR N+R  D     ++A+TLN TA
Sbjct: 212 DMGPGKWRQVDIEVYLPSEGRYRETHSCSALLDWQARRANLRYRDPEGRVRYAYTLNNTA 271

Query: 191 CAIPRLLMALVETHQNQDGTVNIPECLQPFMFNKRI 226
            A PR+L  L+E HQ QDG V +P+ L P+M  + +
Sbjct: 272 LATPRILAMLLENHQLQDGRVRVPQALIPYMGKEVL 307
>d1g5ha2 d.104.1.1 (A:41-330) The aaRS-like accessory subunit of mitochondrial polymerase gamma, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 290 Back     information, alignment and structure
>d1nj1a3 d.104.1.1 (A:19-283) Prolyl-tRNA synthetase (ProRS) {Arhaeon (Methanothermobacter thermautotrophicus) [TaxId: 145262]} Length = 265 Back     information, alignment and structure
>d1nj8a3 d.104.1.1 (A:0-267) Prolyl-tRNA synthetase (ProRS) {Archaeon (Methanocaldococcus jannaschii) [TaxId: 2190]} Length = 268 Back     information, alignment and structure
>d1hc7a2 d.104.1.1 (A:5-276) Prolyl-tRNA synthetase (ProRS) {Thermus thermophilus [TaxId: 274]} Length = 272 Back     information, alignment and structure
>d1atia2 d.104.1.1 (A:1-394) Glycyl-tRNA synthetase (GlyRS) {Thermus thermophilus [TaxId: 274]} Length = 394 Back     information, alignment and structure
>d1b76a2 d.104.1.1 (A:1-394) Glycyl-tRNA synthetase (GlyRS) {Thermus thermophilus [TaxId: 274]} Length = 331 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query264
d1seta2311 Seryl-tRNA synthetase (SerRS) {Thermus thermophilu 100.0
d1nj1a3265 Prolyl-tRNA synthetase (ProRS) {Arhaeon (Methanoth 100.0
d1nj8a3268 Prolyl-tRNA synthetase (ProRS) {Archaeon (Methanoc 100.0
d1nyra4291 Threonyl-tRNA synthetase (ThrRS) {Staphylococcus a 100.0
d1qf6a4291 Threonyl-tRNA synthetase (ThrRS) {Escherichia coli 100.0
d1hc7a2272 Prolyl-tRNA synthetase (ProRS) {Thermus thermophil 100.0
d1g5ha2290 The aaRS-like accessory subunit of mitochondrial p 99.97
d1atia2394 Glycyl-tRNA synthetase (GlyRS) {Thermus thermophil 99.94
d1b76a2331 Glycyl-tRNA synthetase (GlyRS) {Thermus thermophil 99.94
d1z7ma1318 ATP phosphoribosyltransferase regulatory subunit H 98.3
d1wu7a2327 Histidyl-tRNA synthetase (HisRS) {Archaeon Thermop 98.02
d1h4vb2324 Histidyl-tRNA synthetase (HisRS) {Thermus thermoph 97.98
d1jjca_266 Phenyl-tRNA synthetase (PheRS) alpha subunit, PheS 97.84
d1qe0a2325 Histidyl-tRNA synthetase (HisRS) {Staphylococcus a 97.79
d1kmma2322 Histidyl-tRNA synthetase (HisRS) {Escherichia coli 97.58
d1usya_275 ATP phosphoribosyltransferase regulatory subunit H 97.35
d1e1oa2342 Lysyl-tRNA synthetase (LysRS) {Escherichia coli, g 95.31
d1nnha_293 Hypothetical protein PF1951 {Archaeon Pyrococcus f 94.26
d1c0aa3346 Aspartyl-tRNA synthetase (AspRS) {Escherichia coli 93.84
d1eova2353 Aspartyl-tRNA synthetase (AspRS) {Baker's yeast (S 93.84
d1b8aa2335 Aspartyl-tRNA synthetase (AspRS) {Archaeon Pyrococ 93.11
d1l0wa3356 Aspartyl-tRNA synthetase (AspRS) {Thermus thermoph 92.04
d1nyra1113 Threonyl-tRNA synthetase (ThrRS), C-terminal domai 91.69
d1nj1a1127 Prolyl-tRNA synthetase (ProRS) domain {Arhaeon (Me 91.57
d1hc7a1127 Prolyl-tRNA synthetase (ProRS) domain {Thermus the 91.24
d1nj8a1126 Prolyl-tRNA synthetase (ProRS) domain {Archaeon (M 89.02
d1n9wa2304 Aspartyl-tRNA synthetase (AspRS) {Thermus thermoph 86.91
d1g5ha1127 The aaRS-like accessory subunit of mitochondrial p 82.78
>d1seta2 d.104.1.1 (A:111-421) Seryl-tRNA synthetase (SerRS) {Thermus thermophilus, strain hb27 [TaxId: 274]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Class II aaRS and biotin synthetases
superfamily: Class II aaRS and biotin synthetases
family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain
domain: Seryl-tRNA synthetase (SerRS)
species: Thermus thermophilus, strain hb27 [TaxId: 274]

Probab=100.00  E-value=4.3e-64  Score=458.36  Aligned_cols=219  Identities=31%  Similarity=0.514  Sum_probs=206.8

Q ss_pred             chhhhhhcCCCCCCCCCceEEeecCCCCCceEEeCCchHHHHHHHhccccCCCCCcceEEEecceeccCc-cCCccCCCc
Q psy1870           6 CNALECNSKINSKGERSQIYHLEPNYYGNGWCLSGTAEMGIARYLMNQTLPESQLPKQIAAMSKCYRAEI-SVVADEKGV   84 (264)
Q Consensus         6 ~~~l~~~~G~~~~~~~~~ly~i~~~~~~~~~~L~pTaE~~i~~l~~~~~~syr~LPl~l~q~s~~fR~E~-s~g~~~~GL   84 (264)
                      ...++++||++|++ ++++|++.    ++++||+||||++++++++++++++++||++++++++|||+|+ +.|++++||
T Consensus        85 ~~~~~~~~G~~p~f-~~~~y~~~----~~~~~LipTsE~~l~~~~~~~i~~~~~LPlr~~~~s~cfR~Eag~~g~~trGL  159 (311)
T d1seta2          85 REKAFLGTGHFPAY-RDQVWAIA----ETDLYLTGTAEVVLNALHSGEILPYEALPLRYAGYAPAFRSEAGSFGKDVRGL  159 (311)
T ss_dssp             EHHHHHHHTCTTTT-GGGSCBBT----TSSEEECSSTHHHHHHTTTTCEEEGGGCSEEEEEEEEEECCCCSCTTSSCSTT
T ss_pred             ccchhhhccccccc-cccccccc----ccceeecccccchhhhhhhhhhhhhhhccceEEeecccchhhhccccccchhh
Confidence            35678899999988 88999987    5689999999999999999999999999999999999999999 568999999


Q ss_pred             eeeEEEEEeeEEEEcC--cchHHHHHHHHHHHHHHHHHHhCCceEEEEccCCCcCchhhcccceeeecCcccccceeEec
Q psy1870          85 YRVHCFTKIEMFGVTL--PEDSEKQLEQFLQFEESLFGELGIHTRTLNMGANELGAQAYKKYDVEAWMPGRKHWGELSSC  162 (264)
Q Consensus        85 ~R~reF~~~E~~~f~~--pe~s~~~~~~~~~~~~~i~~~Lglpyr~v~~~~~dl~~~a~~~ydiE~w~p~~~~~~Ev~s~  162 (264)
                      +|+|||+++|+|++|.  |++++++++++++++++++++||||||++.++++|++++++++||+|+|+|+++.|.||+||
T Consensus       160 ~RvhQF~kvE~~~~~~~~~e~s~~~~~~~~~~~~~~~~~L~lpyrvv~~~~~dl~~~a~~~~diE~w~P~~~~y~Ev~S~  239 (311)
T d1seta2         160 MRVHQFHKVEQYVLTEASLEASDRAFQELLENAEEILRLLELPYRLVEVATGDMGPGKWRQVDIEVYLPSEGRYRETHSC  239 (311)
T ss_dssp             SSCSEEEEEEEEEEECSCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEECCTTTSCTTCSEEEEEEEEEGGGTEEEEEEEE
T ss_pred             hhhcccchhhhheeeccccccchhHHHHHHHHHHHHHHhhCCcchhccccCCCCchHHHhhhHHHHhHhhcCCcccccCc
Confidence            9999999999999995  56899999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCccchhhcccceeecCC----CceeEEecccccHhHHHHHHHHhccccCCceeccCCccccccceeeecCC
Q psy1870         163 SDCTDYQARRLNIRTEDG----KFAHTLNGTACAIPRLLMALVETHQNQDGTVNIPECLQPFMFNKRIIGDT  230 (264)
Q Consensus       163 s~~~D~qa~rl~i~y~~~----~~~ht~~gtg~~v~Rll~alLE~~~~~~G~i~lP~~LaP~~~~~~~i~~~  230 (264)
                      |||+|||++||+|+|.++    .|+||+|||+++++|+|+|||||||++||.|.+|++|+||++. .+|.|.
T Consensus       240 sn~~d~qsrRl~i~y~~~dg~~~~~htlngT~~ai~R~l~allEn~q~~dG~v~iP~~L~py~~~-~~i~p~  310 (311)
T d1seta2         240 SALLDWQARRANLRYRDPEGRVRYAYTLNNTALATPRILAMLLENHQLQDGRVRVPQALIPYMGK-EVLEPC  310 (311)
T ss_dssp             EECTTHHHHHHTCEEECTTSCEEECEEEEEEEEEETHHHHHHHHHHBCTTSCEECCGGGHHHHSS-SEECCC
T ss_pred             eecchHHHhhcccEEECCCCCEEeEEEecCchhHHHHHHHHHHHhccCCCCcEeCChhhhhhcCC-ceeeeC
Confidence            999999999999999876    4999999999999999999999999999999999999999964 667663
>d1nj1a3 d.104.1.1 (A:19-283) Prolyl-tRNA synthetase (ProRS) {Arhaeon (Methanothermobacter thermautotrophicus) [TaxId: 145262]} Back     information, alignment and structure
>d1nj8a3 d.104.1.1 (A:0-267) Prolyl-tRNA synthetase (ProRS) {Archaeon (Methanocaldococcus jannaschii) [TaxId: 2190]} Back     information, alignment and structure
>d1nyra4 d.104.1.1 (A:242-532) Threonyl-tRNA synthetase (ThrRS) {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d1qf6a4 d.104.1.1 (A:242-532) Threonyl-tRNA synthetase (ThrRS) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1hc7a2 d.104.1.1 (A:5-276) Prolyl-tRNA synthetase (ProRS) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1g5ha2 d.104.1.1 (A:41-330) The aaRS-like accessory subunit of mitochondrial polymerase gamma, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1atia2 d.104.1.1 (A:1-394) Glycyl-tRNA synthetase (GlyRS) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1b76a2 d.104.1.1 (A:1-394) Glycyl-tRNA synthetase (GlyRS) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1z7ma1 d.104.1.1 (A:6-323) ATP phosphoribosyltransferase regulatory subunit HisZ {Lactococcus lactis [TaxId: 1358]} Back     information, alignment and structure
>d1wu7a2 d.104.1.1 (A:3-329) Histidyl-tRNA synthetase (HisRS) {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Back     information, alignment and structure
>d1h4vb2 d.104.1.1 (B:2-325) Histidyl-tRNA synthetase (HisRS) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1jjca_ d.104.1.1 (A:) Phenyl-tRNA synthetase (PheRS) alpha subunit, PheS {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1qe0a2 d.104.1.1 (A:1-325) Histidyl-tRNA synthetase (HisRS) {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d1kmma2 d.104.1.1 (A:4-325) Histidyl-tRNA synthetase (HisRS) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1usya_ d.104.1.1 (A:) ATP phosphoribosyltransferase regulatory subunit HisZ {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1e1oa2 d.104.1.1 (A:161-502) Lysyl-tRNA synthetase (LysRS) {Escherichia coli, gene lysU [TaxId: 562]} Back     information, alignment and structure
>d1nnha_ d.104.1.1 (A:) Hypothetical protein PF1951 {Archaeon Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1c0aa3 d.104.1.1 (A:107-287,A:421-585) Aspartyl-tRNA synthetase (AspRS) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1eova2 d.104.1.1 (A:205-557) Aspartyl-tRNA synthetase (AspRS) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1b8aa2 d.104.1.1 (A:104-438) Aspartyl-tRNA synthetase (AspRS) {Archaeon Pyrococcus kodakaraensis [TaxId: 311400]} Back     information, alignment and structure
>d1l0wa3 d.104.1.1 (A:105-294,A:415-580) Aspartyl-tRNA synthetase (AspRS) {Thermus thermophilus, AspRS-1 [TaxId: 274]} Back     information, alignment and structure
>d1nyra1 c.51.1.1 (A:533-645) Threonyl-tRNA synthetase (ThrRS), C-terminal domain {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d1nj1a1 c.51.1.1 (A:284-410) Prolyl-tRNA synthetase (ProRS) domain {Arhaeon (Methanothermobacter thermautotrophicus) [TaxId: 145262]} Back     information, alignment and structure
>d1hc7a1 c.51.1.1 (A:277-403) Prolyl-tRNA synthetase (ProRS) domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1nj8a1 c.51.1.1 (A:268-393) Prolyl-tRNA synthetase (ProRS) domain {Archaeon (Methanocaldococcus jannaschii) [TaxId: 2190]} Back     information, alignment and structure
>d1n9wa2 d.104.1.1 (A:111-414) Aspartyl-tRNA synthetase (AspRS) {Thermus thermophilus, AspRS-2 [TaxId: 274]} Back     information, alignment and structure
>d1g5ha1 c.51.1.1 (A:343-469) The aaRS-like accessory subunit of mitochondrial polymerase gamma, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure