Psyllid ID: psy1887

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650---
MDSRNIAGFEVVVVVDDVQDTPPIFINIQPVIQLAPNLTMNDVLTKITAIDGDKGHPRTIKYGLVSEGHPMTVFFTINELTGPKMSPQVFLLVLMCYSVVANYPVFDISTQMRSLLIPASVKLGTIIYRLRASDSDKDYPLTFDATDFGSYVVKIKSLPCSKNSSFCEANVYLDRVLVPGQVFQFRIIVKDTRGDTTTVPTSLTATDAALNINAQFPHIPGVIVVPEVLGTYLLWRHLSGPKNMYLMREIRLSKPYRELHTVASGQPVILMVLAEEERKDLNEPSPQSSTATIALVFDQAINTPPYFDTVQYITHLDENSPQGTALIFAESFHTQVTDDNMGKNGIFSLTLENNNGTFEIWPSVVERKAQFTIRVRNNKNLDYERTRTLSFVIVAKEISSDSSSNLLSSQAPVLVYINDVNDNPPVFTATLYTAKIPENATAGEKVVQVKATDVDTNLGGEILYTAILGYKNSSLELDAHTGDITIANGQQFDREEASEYKFQVEARDMQGLGLRTVVPLQLTILDVNDNAPIFVQTPFEFVLASDSRNFSERTFIKATDQDAEAPNNIVRYEIISGNYDNKFSLHPETGVPHKWSTTQVRIYPPDSAVRNIKFLVPHSQAQLERKQLEDILSEMSGGRVSVVNTRPHYEDYD
cccccEEEEEEEEEEEEcccccccccccccEEEEEcccccccEEEEEEEEEcccccccEEEEEEEEcccccEEEEEEEcccccccccEEEEEEEEEEEEcccccccccccccEEEEEEcccccccEEEEEEEEEccccccEEEEEEEccccEEEEccEEccccccEEEEEEEccccccccEEEEEEEEEEEccccccEEEEEEEEEEEEcccccccccccEEEEcccccccEEEEEEEEcccccEEEEEEEccccccEEEEEccccEEEEEEEEEEEEEccccccccEEEEEEEEEEEEccccccEEcccEEEEEEEcccccccEEEEEEccEEEEEEccccccEEEEEEEEcccccEEEccccccccccEEEEEEEccccccccccEEEEEEEEEEccccccccccEEEEEEEEEEEEEccccccccccEEEEEEEcccccccEEEEEEEEEcccccccEEEEEEEEccccccEEEEccccEEEEccccccccccccEEEEEEEEEEccccccEEEEEEEEEEEEccccccccccccEEEEEccccccccEEEEEEEEEccccccccEEEEEEEEccccccEEEEccccEEEEcEEEEEEEcccccEEEEEEEEEEEEcccccccEEEEEEEEEEccccccccccccEEccc
cccccccEEEEEEEEEEccccccccccccEEEEEEcccccccEEEEEEEEccccccccEEEEEEEcccccccEEEEEEccccccccccEEEEEEEEEEcccccccEcccccEEEEEEccccccccEEEEEEEEcccccccEEEEEEccccEEEEEEcccccccccEEEEEEEEccccccccEEEEEEEEEEcccccccEcccEEEEEEEccccccEEEEEEEEccccccccEEEEEEEcccccEEEEcccccEEEEEccccccccccEEEEEEEEEEEcccccccccccEEEEEEEEEEcccccccEccccEEEEEEcccccccEEEEEEEEEEEEEccccccccEEEEEEEccccccccccccEEEEccccEEEEEEcccccccccEEEEEEEEEEccccccccccccEEEEEEEEEEccccccccccccEEEEEccccccccEEEEEEEEccccccccEEEEEEEcccccccEEEEccccEEEEEEEcccccccccEEEEEEEEEcccccccccEEEEEEEEEEccccccccccccEEEEEEcccccccEEEEEEEEcccccccccEEEEEEEccccccEEEEcccccEEEEEccccccccHHcHHHcEEEEEEEcccccccccEEEEEEEEEEccccccccccccHcccc
mdsrniagFEVVVVVddvqdtppifiniqpviqlapnltmndVLTKItaidgdkghprtikyglvseghpmTVFFTIneltgpkmspQVFLLVLMCYSVvanypvfdistqMRSLLIPASVKLGTIIYRlrasdsdkdypltfdatdfgsYVVKIkslpcsknssfceanvyldrvlvpgqvfQFRIIVkdtrgdtttvptsltatdaalninaqfphipgvivvPEVLGTYLLWRhlsgpknmyLMREIRlskpyrelhtvasgqPVILMVLAEEerkdlnepspqsstATIALVFDqaintppyfdtvQYIThldenspqgTALIFAESFhtqvtddnmgkngIFSLTlennngtfeiwPSVVERKAQFTIRVRNNKNLDYERTRTLSFVIVAKEIssdsssnllssqapvLVYIndvndnppvfTATLYTakipenatageKVVQVKAtdvdtnlggEILYTAILGyknssleldahtgditiangqqfdreeaSEYKFQVEARdmqglglrtvvplqltildvndnapifvqtpfefvlasdsrnfsertfikatdqdaeapnniVRYEIIsgnydnkfslhpetgvphkwsttqvriyppdsavrnikflvphsQAQLERKQLEDILSemsggrvsvvntrphyedyd
mdsrniagFEVVVVVDDVQDTPPIFINIQPVIQLAPNLTMNDVLTKItaidgdkghpRTIKYGLVSEGHPMTVFFTINELTGPKMSPQVFLLVLMCYSVVANYPVFDISTQMRSLLIPASVKLGTIIYRLrasdsdkdypLTFDATDFGSYVVKIKSLPCSKNSSFCEANVYLDRVLVPGQVFQFRiivkdtrgdtttvpTSLTATDAALNINAQFPHIPGVIVVPEVLGTYLLWRHLSGPKNMYLMREIRLSKPYRELHTVASGQPVILMVLAEEERKDLNEPSPQSSTATIALVFDQAINTPPYFDTVQYITHLDENSPQGTALIFAESFHTQVTDDNMGKNGIFSLTLENNNGTFEIWPSVVERKAQFTIrvrnnknldyertrTLSFVIVAKEissdsssnllSSQAPVLVYINDVNDNPPVFTATLYTAKIPenatagekvvqVKATDVDTNLGGEILYTAILGYKNSSLELDAHTGDITIANGQQFDREEASEYKFQVEARDMQGLGLRTVVPLQLTILDVNDNAPIFVQTPFEFVLASDSRNFSERTFikatdqdaeapnnIVRYEIISGNYDNKFSLHPETGVPHKWSTTQVRIYPPDSAVRNIKFLVPHSQAQLERKQLEdilsemsggrvsvvntrphyedyd
MDSRNIAGFEvvvvvddvQDTPPIFINIQPVIQLAPNLTMNDVLTKITAIDGDKGHPRTIKYGLVSEGHPMTVFFTINELTGPKMSPQVFLLVLMCYSVVANYPVFDISTQMRSLLIPASVKLGTIIYRLRASDSDKDYPLTFDATDFGSYVVKIKSLPCSKNSSFCEANVYLDRVLVPGQVFQFRIIVKDTRGDTTTVPTSLTATDAALNINAQFPHIPGVIVVPEVLGTYLLWRHLSGPKNMYLMREIRLSKPYRELHTVASGQPVILMVLAEEERKDLNEPSPQSSTATIALVFDQAINTPPYFDTVQYITHLDENSPQGTALIFAESFHTQVTDDNMGKNGIFSLTLENNNGTFEIWPSVVERKAQFTIRVRNNKNLDYERTRTLSFVIVAKEIssdsssnllssQAPVLVYINDVNDNPPVFTATLYTAKIPENATAGEKVVQVKATDVDTNLGGEILYTAILGYKNSSLELDAHTGDITIANGQQFDREEASEYKFQVEARDMQGLGLRTVVPLQLTILDVNDNAPIFVQTPFEFVLASDSRNFSERTFIKATDQDAEAPNNIVRYEIISGNYDNKFSLHPETGVPHKWSTTQVRIYPPDSAVRNIKFLVPHSQAQLERKQLEDILSEMSGGRVSVVNTRPHYEDYD
*****IAGFEVVVVVDDVQDTPPIFINIQPVIQLAPNLTMNDVLTKITAIDGDKGHPRTIKYGLVSEGHPMTVFFTINELTGPKMSPQVFLLVLMCYSVVANYPVFDISTQMRSLLIPASVKLGTIIYRLRASDSDKDYPLTFDATDFGSYVVKIKSLPCSKNSSFCEANVYLDRVLVPGQVFQFRIIVKDTRGDTTTVPTSLTATDAALNINAQFPHIPGVIVVPEVLGTYLLWRHLSGPKNMYLMREIRLSKPYRELHTVASGQPVILMVLA****************ATIALVFDQAINTPPYFDTVQYITHLDENSPQGTALIFAESFHTQVTDDNMGKNGIFSLTLENNNGTFEIWPSVVERKAQFTIRVRNNKNLDYERTRTLSFVIVAKEI***********QAPVLVYINDVNDNPPVFTATLYTAKIPENATAGEKVVQVKATDVDTNLGGEILYTAILGYKNSSLELDAHTGDITIANGQQFD****SEYKFQVEARDMQGLGLRTVVPLQLTILDVNDNAPIFVQTPFEFVLASDSRNFSERTFIKATDQDAEAPNNIVRYEIISGNYDNKFSLHPETGVPHKWSTTQVRIYPPDSAVRNIKFLVP************************************
***RNIAGFEVVVVVDDVQDTPPIFINIQPVIQLAPNLTMNDVLTKITAIDGDKGHPRTIKYGLVSEGHPMTVFFTINELTGPKMSPQVFLLVLMCYSVVANYPVFDISTQMRSLLIPASVKLGTIIYRLRASDSDKDYPLTFDATDFGSYVVKIKSLPCSKNSSFCEANVYLDRVLVPGQVFQFRIIVKDTRGDTTTVPTSLTATDAALNINAQFPHIPGVIVVPEVLGTYLLWRHLSGPKNMYLMREIRLSKPYRELHTVASGQPVILMVLAEEER******SPQSSTATIALVFDQAINTPPYFDTVQYITHLDENSPQGTALIFAESFHTQVTDDNMGKNGIFSLTLENNNGTFEIWPSVVERKAQFTIRVRNNKNLDYERTRTLSFVIVAKEISSDSSSNLLSSQAPVLVYINDVNDNPPVFTATLYTAKIPENATAGEKVVQVKATDVDTNLGGEILYTAILGYKNSSLELDAHTGDITIANGQQFDREEASEYKFQVEARDMQGLGLRTVVPLQLTILDVNDNAPIFVQTPFEFVLASDSRNFSERTFIKATDQDAEAPNNIVRYEIISGNYDNKFSLHPETGVPHKWSTTQVRIYPPDSAVRNIKFLVPHSQAQLERKQLEDILSEMSGGRVSVVNTRPHYE***
MDSRNIAGFEVVVVVDDVQDTPPIFINIQPVIQLAPNLTMNDVLTKITAIDGDKGHPRTIKYGLVSEGHPMTVFFTINELTGPKMSPQVFLLVLMCYSVVANYPVFDISTQMRSLLIPASVKLGTIIYRLRASDSDKDYPLTFDATDFGSYVVKIKSLPCSKNSSFCEANVYLDRVLVPGQVFQFRIIVKDTRGDTTTVPTSLTATDAALNINAQFPHIPGVIVVPEVLGTYLLWRHLSGPKNMYLMREIRLSKPYRELHTVASGQPVILMVLAEEER**********STATIALVFDQAINTPPYFDTVQYITHLDENSPQGTALIFAESFHTQVTDDNMGKNGIFSLTLENNNGTFEIWPSVVERKAQFTIRVRNNKNLDYERTRTLSFVIVAKEI********LSSQAPVLVYINDVNDNPPVFTATLYTAKIPENATAGEKVVQVKATDVDTNLGGEILYTAILGYKNSSLELDAHTGDITIANGQQFDREEASEYKFQVEARDMQGLGLRTVVPLQLTILDVNDNAPIFVQTPFEFVLASDSRNFSERTFIKATDQDAEAPNNIVRYEIISGNYDNKFSLHPETGVPHKWSTTQVRIYPPDSAVRNIKFLVPHSQAQLERKQLEDILSEMSGGRVSVVNTRPHYEDYD
****NIAGFEVVVVVDDVQDTPPIFINIQPVIQLAPNLTMNDVLTKITAIDGDKGHPRTIKYGLVSEGHPMTVFFTINELTGPKMSPQVFLLVLMCYSVVANYPVFDISTQMRSLLIPASVKLGTIIYRLRASDSDKDYPLTFDATDFGSYVVKIKSLPCSKNSSFCEANVYLDRVLVPGQVFQFRIIVKDTRGDTTTVPTSLTATDAALNINAQFPHIPGVIVVPEVLGTYLLWRHLSGPKNMYLMREIRLSKPYRELHTVASGQPVILMVLAEEERKDLNEPSPQSSTATIALVFDQAINTPPYFDTVQYITHLDENSPQGTALIFAESFHTQVTDDNMGKNGIFSLTLENNNGTFEIWPSVVERKAQFTIRVRNNKNLDYERTRTLSFVIVAKEISSDSSSNLLSSQAPVLVYINDVNDNPPVFTATLYTAKIPENATAGEKVVQVKATDVDTNLGGEILYTAILGYKNSSLELDAHTGDITIANGQQFDREEASEYKFQVEARDMQGLGLRTVVPLQLTILDVNDNAPIFVQTPFEFVLASDSRNFSERTFIKATDQDAEAPNNIVRYEIISGNYDNKFSLHPETGVPHKWSTTQVRIYPPDSAVRNIKFLVPHSQAQLERKQLEDILSEMSGGRVSVVNTRPH*****
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MDSRNIAGFEVVVVVDDVQDTPPIFINIQPVIQLAPNLTMNDVLTKITAIDGDKGHPRTIKYGLVSEGHPMTVFFTINELTGPKMSPQVFLLVLMCYSVVANYPVFDISTQMRSLLIPASVKLGTIIYRLRASDSDKDYPLTFDATDFGSYVVKIKSLPCSKNSSFCEANVYLDRVLVPGQVFQFRIIVKDTRGDTTTVPTSLTATDAALNINAQFPHIPGVIVVPEVLGTYLLWRHLSGPKNMYLMREIRLSKPYRELHTVASGQPVILMVLAEEERKDLNEPSPQSSTATIALVFDQAINTPPYFDTVQYITHLDENSPQGTALIFAESFHTQVTDDNMGKNGIFSLTLENNNGTFEIWPSVVERKAQFTIRVRNNKNLDYERTRTLSFVIVAKEISSDSSSNLLSSQAPVLVYINDVNDNPPVFTATLYTAKIPENATAGEKVVQVKATDVDTNLGGEILYTAILGYKNSSLELDAHTGDITIANGQQFDREEASEYKFQVEARDMQGLGLRTVVPLQLTILDVNDNAPIFVQTPFEFVLASDSRNFSERTFIKATDQDAEAPNNIVRYEIISGNYDNKFSLHPETGVPHKWSTTQVRIYPPDSAVRNIKFLVPHSQAQLERKQLEDILSEMSGGRVSVVNTRPHYEDYD
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query653 2.2.26 [Sep-21-2011]
Q9VGW1 1943 Cadherin-86C OS=Drosophil yes N/A 0.603 0.202 0.456 3e-98
Q91XU7 859 Cadherin-related family m yes N/A 0.444 0.337 0.347 2e-34
Q8VHP6 859 Cadherin-related family m yes N/A 0.451 0.343 0.340 3e-34
Q6B457 867 Cadherin-related family m N/A N/A 0.385 0.290 0.346 8e-34
Q8WN91 867 Cadherin-related family m yes N/A 0.407 0.306 0.346 2e-33
Q96JP9 859 Cadherin-related family m yes N/A 0.413 0.314 0.335 2e-32
Q8UVJ7 865 Cadherin-related family m yes N/A 0.385 0.291 0.35 7e-32
Q6B3P0 857 Cadherin-related family m yes N/A 0.433 0.330 0.298 1e-29
Q9BYE9 1310 Cadherin-related family m no N/A 0.799 0.398 0.247 2e-27
Q14517 4588 Protocadherin Fat 1 OS=Ho no N/A 0.612 0.087 0.274 3e-27
>sp|Q9VGW1|CAD86_DROME Cadherin-86C OS=Drosophila melanogaster GN=Cad86C PE=2 SV=3 Back     alignment and function desciption
 Score =  360 bits (923), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 203/445 (45%), Positives = 270/445 (60%), Gaps = 51/445 (11%)

Query: 249 EIRLSKPYRELHTVAS-GQPVILMVLAEEERKDLNEPSPQSSTATIALVFDQAINTPPYF 307
           EI L +P  ++  +   G PV+L V+AEE +   +EP   +ST  +A       N+PPYF
Sbjct: 424 EIFLMRPLEDIAFITHVGDPVLLTVIAEEVKVGRDEPPALASTVQLAFFLPDRTNSPPYF 483

Query: 308 DTVQYITHLDENSPQGTALIFAESFHTQVTDDNMGKNGIFSLTLENNNGTFEIWPSVVER 367
           +   Y++ +DEN+PQGTAL F + +  +V DD+ GKNG+FSLTL NNNGTFEI P+V ER
Sbjct: 484 ENDHYVSRVDENAPQGTALTFVDPYVPRVYDDDTGKNGVFSLTLLNNNGTFEISPNVAER 543

Query: 368 KAQFTIRVRNNKNLDYERTRTLSFVIVAKEISSDSSSNLLSSQAPVLVYINDVNDNPPVF 427
            A F IRVR+N  LDYE+ +++ F I+A+E+   ++   LS+   V VYINDVNDN PVF
Sbjct: 544 SAGFLIRVRDNSMLDYEQQQSVQFQILAQELGPATN---LSALVNVTVYINDVNDNAPVF 600

Query: 428 TATLYTAKIPENATAGEKVVQVKATDVDTNLGGEILYTAILGYKNSSLELDAHTGDITIA 487
               Y+ ++PEN TAG KVVQV ATD D+ LGG++ YTAILGY N+SL LDA TG IT++
Sbjct: 601 EQPAYSVELPENMTAGTKVVQVLATDPDSGLGGKVRYTAILGYLNTSLNLDAETGLITVS 660

Query: 488 -NGQQFDREEASEYKFQVEARDMQGLGLRTVVPLQLTILDVNDNAPIFVQTPFEFVLASD 546
            N   FDRE   EY   VEARDM G G R  VPL + ++DVND  PIF +  +EF+L  D
Sbjct: 661 TNKHGFDREVMPEYHLYVEARDMDGEGNRAQVPLIIKLIDVNDETPIFDKDLYEFILTHD 720

Query: 547 SRNFSERTFIKATDQDAEAPNNIVRYEIISGNYDNKFSLHPET----------------- 589
              F+    I A D+DA APNN VRYEII+GNYDN+F L   T                 
Sbjct: 721 LMGFTTTAVIHAEDKDATAPNNEVRYEIINGNYDNQFVLDKVTGELTVREKIHLRSKKNA 780

Query: 590 ---------------------------GVPHKWSTTQVRIYPPDSAVRNIKFLVPHSQAQ 622
                                      GVP ++STT +R+YPP+S  R++KF+VP     
Sbjct: 781 KTRRRRQAGSDDEDTDIFILTARAYDLGVPVRFSTTTIRVYPPESRKRSVKFVVPGHNP- 839

Query: 623 LERKQLEDILSEMSGGRVSVVNTRP 647
            ++ + E+ LS +SGG+V + N RP
Sbjct: 840 -DKAKTEETLSALSGGKVYIHNIRP 863
Cadherins are calcium dependent cell adhesion proteins. They preferentially interact with themselves in a homophilic manner in connecting cells.
Drosophila melanogaster (taxid: 7227)
>sp|Q91XU7|CDHR1_RAT Cadherin-related family member 1 OS=Rattus norvegicus GN=Cdhr1 PE=2 SV=1 Back     alignment and function description
>sp|Q8VHP6|CDHR1_MOUSE Cadherin-related family member 1 OS=Mus musculus GN=Cdhr1 PE=1 SV=1 Back     alignment and function description
>sp|Q6B457|CDHR1_XENLA Cadherin-related family member 1 OS=Xenopus laevis GN=cdhr1 PE=2 SV=1 Back     alignment and function description
>sp|Q8WN91|CDHR1_BOVIN Cadherin-related family member 1 OS=Bos taurus GN=CDHR1 PE=2 SV=1 Back     alignment and function description
>sp|Q96JP9|CDHR1_HUMAN Cadherin-related family member 1 OS=Homo sapiens GN=CDHR1 PE=1 SV=2 Back     alignment and function description
>sp|Q8UVJ7|CDHR1_CHICK Cadherin-related family member 1 OS=Gallus gallus GN=CDHR1 PE=2 SV=1 Back     alignment and function description
>sp|Q6B3P0|CDHR1_DANRE Cadherin-related family member 1 OS=Danio rerio GN=cdhr1 PE=2 SV=1 Back     alignment and function description
>sp|Q9BYE9|CDHR2_HUMAN Cadherin-related family member 2 OS=Homo sapiens GN=CDHR2 PE=1 SV=2 Back     alignment and function description
>sp|Q14517|FAT1_HUMAN Protocadherin Fat 1 OS=Homo sapiens GN=FAT1 PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query653
242012523 1635 hypothetical protein Phum_PHUM288410 [Pe 0.606 0.242 0.481 1e-108
328714327 1283 PREDICTED: hypothetical protein LOC10015 0.611 0.310 0.451 1e-106
357615339 1775 cadherin [Danaus plexippus] 0.612 0.225 0.458 1e-103
386765519 1008 cadherin 86C, isoform G [Drosophila mela 0.603 0.390 0.453 5e-97
353526343 1943 RecName: Full=Cadherin-86C; Flags: Precu 0.603 0.202 0.456 2e-96
386765517 1949 cadherin 86C, isoform F [Drosophila mela 0.603 0.202 0.453 5e-96
386765515 1915 cadherin 86C, isoform E [Drosophila mela 0.603 0.205 0.453 6e-96
281361542 1943 cadherin 86C, isoform C [Drosophila mela 0.603 0.202 0.453 6e-96
195394336 1838 GJ10587 [Drosophila virilis] gi|19414251 0.603 0.214 0.446 1e-94
198453149 1912 GA26445, isoform A [Drosophila pseudoobs 0.603 0.206 0.437 3e-93
>gi|242012523|ref|XP_002426982.1| hypothetical protein Phum_PHUM288410 [Pediculus humanus corporis] gi|212511211|gb|EEB14244.1| hypothetical protein Phum_PHUM288410 [Pediculus humanus corporis] Back     alignment and taxonomy information
 Score =  399 bits (1026), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 218/453 (48%), Positives = 287/453 (63%), Gaps = 57/453 (12%)

Query: 249 EIRLSKPYRELHTVASGQPVILMVLAEEERKDLNEPSPQSSTATIALVFDQAI-NTPPYF 307
           E+ L++P ++L  V   QP+IL V AEE RK+  +P P SST  +ALV D    NTPPYF
Sbjct: 307 EVYLARPVKDLLNVR--QPMILTVSAEEIRKNSFDPPPLSSTTQVALVLDNDFSNTPPYF 364

Query: 308 DTVQYITHLDENSPQGTALIFAESFHTQVTDDNMGKNGIFSLTLENNNGTFEIWPSVVER 367
           +  Q+   L EN+PQGTA++F E + T V DD++GKNG+FSLTLENNNGTFEI P+V E+
Sbjct: 365 ENEQFSARLPENAPQGTAVVFGEPYSTLVRDDDVGKNGVFSLTLENNNGTFEISPNVGEQ 424

Query: 368 KAQFTIRVRNNKNLDYERTRTLSFVIVAKEIS-SDSSSNLLSSQAPVLVYINDVNDNPPV 426
           KA F IRVRNN+ LDYE+   + F +VA+E++ S  S   L S+A V +Y++D NDNPPV
Sbjct: 425 KANFVIRVRNNELLDYEQRTYVVFTVVAREVTPSKDSIKPLESRANVTIYLDDQNDNPPV 484

Query: 427 FTATLYTAKIPENATAGEKVVQVKATDVDTNLGGEILYTAILGYKNSSLELDAHTGDITI 486
           F    Y A+IPEN TAG  + QV+A DVDT + G++ YT +LG  N SL +D+ +G IT+
Sbjct: 485 FLQEKYEAEIPENVTAGTVITQVQANDVDTGVFGKVFYTNLLGNINQSLTIDSMSGIITV 544

Query: 487 A-NGQQFDREEASEYKFQVEARDMQGLGLRTVVPLQLTILDVNDNAPIFVQTPFEFVLAS 545
           A N   FDRE A EY+  VEA+DM+G G    VPL + +LDVND  P F +  FEF+L  
Sbjct: 545 ATNNHGFDRESAEEYRLLVEAKDMEGRGNMATVPLIIKLLDVNDETPQFEKQTFEFILQP 604

Query: 546 DSRNFSERTFIKATDQDAEAPNNIVRYEIISGNYDNKFSLHPET---------------- 589
           + RNF+ R F+KATD+DAE PNNIVRYEIISGNYDN F L+  T                
Sbjct: 605 NLRNFTTRAFVKATDRDAEKPNNIVRYEIISGNYDNNFILNEITGELFIRGKLTSNNLRQ 664

Query: 590 ----------------------------------GVPHKWSTTQVRIYPPDSAVRNIKFL 615
                                             GVPH+W+  QVRIYPP+S  RN+ F+
Sbjct: 665 SNSDDTYYPGSGPDSDSNGDVLSVIPLTVRAYDLGVPHRWTHAQVRIYPPESRARNMDFI 724

Query: 616 VPHSQAQLERKQLEDILSEMSGGRVSVVNTRPH 648
           V  S +  +RK +ED+LS+++GGRVS+ + RP+
Sbjct: 725 V--SSSNKDRKAIEDLLSQLTGGRVSIQDIRPY 755

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|328714327|ref|XP_001943434.2| PREDICTED: hypothetical protein LOC100158675 [Acyrthosiphon pisum] Back     alignment and taxonomy information
>gi|357615339|gb|EHJ69604.1| cadherin [Danaus plexippus] Back     alignment and taxonomy information
>gi|386765519|ref|NP_001247034.1| cadherin 86C, isoform G [Drosophila melanogaster] gi|383292626|gb|AFH06352.1| cadherin 86C, isoform G [Drosophila melanogaster] Back     alignment and taxonomy information
>gi|353526343|sp|Q9VGW1.3|CAD86_DROME RecName: Full=Cadherin-86C; Flags: Precursor gi|189166074|gb|ACD79974.1| cadherin [Drosophila melanogaster] Back     alignment and taxonomy information
>gi|386765517|ref|NP_001247033.1| cadherin 86C, isoform F [Drosophila melanogaster] gi|383292625|gb|AFH06351.1| cadherin 86C, isoform F [Drosophila melanogaster] Back     alignment and taxonomy information
>gi|386765515|ref|NP_001247032.1| cadherin 86C, isoform E [Drosophila melanogaster] gi|383292624|gb|AFH06350.1| cadherin 86C, isoform E [Drosophila melanogaster] Back     alignment and taxonomy information
>gi|281361542|ref|NP_788635.3| cadherin 86C, isoform C [Drosophila melanogaster] gi|386765513|ref|NP_001247031.1| cadherin 86C, isoform D [Drosophila melanogaster] gi|272476921|gb|AAF54562.5| cadherin 86C, isoform C [Drosophila melanogaster] gi|383292623|gb|AFH06349.1| cadherin 86C, isoform D [Drosophila melanogaster] Back     alignment and taxonomy information
>gi|195394336|ref|XP_002055801.1| GJ10587 [Drosophila virilis] gi|194142510|gb|EDW58913.1| GJ10587 [Drosophila virilis] Back     alignment and taxonomy information
>gi|198453149|ref|XP_002137604.1| GA26445, isoform A [Drosophila pseudoobscura pseudoobscura] gi|198132231|gb|EDY68162.1| GA26445, isoform A [Drosophila pseudoobscura pseudoobscura] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query653
FB|FBgn0261053 1943 Cad86C "Cadherin 86C" [Drosoph 0.519 0.174 0.511 2.7e-125
FB|FBgn0038247 2002 Cad88C "Cadherin 88C" [Drosoph 0.702 0.229 0.303 1.9e-37
MGI|MGI:2157782 859 Cdhr1 "cadherin-related family 0.451 0.343 0.334 2.2e-37
RGD|620420 859 Cdhr1 "cadherin-related family 0.444 0.337 0.340 4.4e-37
UNIPROTKB|Q91XU7 859 Cdhr1 "Cadherin-related family 0.444 0.337 0.340 4.4e-37
UNIPROTKB|F1NKC9 862 CDHR1 "Cadherin-related family 0.460 0.349 0.326 3.2e-34
UNIPROTKB|Q8UVJ7 865 CDHR1 "Cadherin-related family 0.460 0.347 0.326 3.3e-34
UNIPROTKB|F1P185 865 CDHR1 "Cadherin-related family 0.460 0.347 0.326 6.8e-34
UNIPROTKB|Q96JP9 859 CDHR1 "Cadherin-related family 0.471 0.358 0.309 7.7e-34
UNIPROTKB|F1Q0U5 827 CDHR1 "Uncharacterized protein 0.447 0.353 0.326 9.9e-34
FB|FBgn0261053 Cad86C "Cadherin 86C" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 848 (303.6 bits), Expect = 2.7e-125, Sum P(3) = 2.7e-125
 Identities = 176/344 (51%), Positives = 225/344 (65%)

Query:   249 EIRLSKPYRELHTVAS-GQPVILMVLAEEERKDLNEPSPQSSTATIALVFDQAINTPPYF 307
             EI L +P  ++  +   G PV+L V+AEE +   +EP   +ST  +A       N+PPYF
Sbjct:   424 EIFLMRPLEDIAFITHVGDPVLLTVIAEEVKVGRDEPPALASTVQLAFFLPDRTNSPPYF 483

Query:   308 DTVQYITHLDENSPQGTALIFAESFHTQVTDDNMGKNGIFSLTLENNNGTFEIWPSVVER 367
             +   Y++ +DEN+PQGTAL F + +  +V DD+ GKNG+FSLTL NNNGTFEI P+V ER
Sbjct:   484 ENDHYVSRVDENAPQGTALTFVDPYVPRVYDDDTGKNGVFSLTLLNNNGTFEISPNVAER 543

Query:   368 KAQFTIRVRNNKNLDYERTRTLSFVIVAKEIXXXXXXXXXXXQAPVLVYINDVNDNPPVF 427
              A F IRVR+N  LDYE+ +++ F I+A+E+              V VYINDVNDN PVF
Sbjct:   544 SAGFLIRVRDNSMLDYEQQQSVQFQILAQELGPATNLSALVN---VTVYINDVNDNAPVF 600

Query:   428 TATLYTAKIPENATAGEKVVQVKATDVDTNLGGEILYTAILGYKNSSLELDAHTGDITIA 487
                 Y+ ++PEN TAG KVVQV ATD D+ LGG++ YTAILGY N+SL LDA TG IT++
Sbjct:   601 EQPAYSVELPENMTAGTKVVQVLATDPDSGLGGKVRYTAILGYLNTSLNLDAETGLITVS 660

Query:   488 -NGQQFDREEASEYKFQVEARDMQGLGLRTVVPLQLTILDVNDNAPIFVQTPFEFVLASD 546
              N   FDRE   EY   VEARDM G G R  VPL + ++DVND  PIF +  +EF+L  D
Sbjct:   661 TNKHGFDREVMPEYHLYVEARDMDGEGNRAQVPLIIKLIDVNDETPIFDKDLYEFILTHD 720

Query:   547 SRNFSERTFIKATDQDAEAPNNIVRYEIISGNYDNKFSLHPETG 590
                F+    I A D+DA APNN VRYEII+GNYDN+F L   TG
Sbjct:   721 LMGFTTTAVIHAEDKDATAPNNEVRYEIINGNYDNQFVLDKVTG 764
GO:0005887 "integral to plasma membrane" evidence=ISS
GO:0016339 "calcium-dependent cell-cell adhesion" evidence=ISS;NAS
GO:0016021 "integral to membrane" evidence=NAS
GO:0005509 "calcium ion binding" evidence=IEA
GO:0007156 "homophilic cell adhesion" evidence=IEA
GO:0035003 "subapical complex" evidence=IDA
GO:0008360 "regulation of cell shape" evidence=IMP
FB|FBgn0038247 Cad88C "Cadherin 88C" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
MGI|MGI:2157782 Cdhr1 "cadherin-related family member 1" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|620420 Cdhr1 "cadherin-related family member 1" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|Q91XU7 Cdhr1 "Cadherin-related family member 1" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|F1NKC9 CDHR1 "Cadherin-related family member 1" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|Q8UVJ7 CDHR1 "Cadherin-related family member 1" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F1P185 CDHR1 "Cadherin-related family member 1" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|Q96JP9 CDHR1 "Cadherin-related family member 1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1Q0U5 CDHR1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query653
cd1130498 cd11304, Cadherin_repeat, Cadherin tandem repeat d 7e-22
smart0011281 smart00112, CA, Cadherin repeats 4e-15
pfam0002892 pfam00028, Cadherin, Cadherin domain 4e-14
cd1130498 cd11304, Cadherin_repeat, Cadherin tandem repeat d 3e-10
smart0011281 smart00112, CA, Cadherin repeats 4e-10
cd1130498 cd11304, Cadherin_repeat, Cadherin tandem repeat d 2e-05
smart0011281 smart00112, CA, Cadherin repeats 0.001
pfam0002892 pfam00028, Cadherin, Cadherin domain 0.003
>gnl|CDD|206637 cd11304, Cadherin_repeat, Cadherin tandem repeat domain Back     alignment and domain information 
 Score = 90.5 bits (225), Expect = 7e-22
 Identities = 40/99 (40%), Positives = 55/99 (55%), Gaps = 2/99 (2%)

Query: 432 YTAKIPENATAGEKVVQVKATDVDTNLGGEILYTAILGYKNSSLELDAHTGDITIANGQQ 491
           Y   +PENA  G  V+ V ATD D+   GE+ Y+ + G ++    +D  TG+IT A  + 
Sbjct: 2   YEVSVPENAPPGTVVLTVSATDPDSGENGEVTYSIVSGNEDGLFSIDPSTGEITTA--KP 59

Query: 492 FDREEASEYKFQVEARDMQGLGLRTVVPLQLTILDVNDN 530
            DREE S Y   V A D  G  L +   + +T+LDVNDN
Sbjct: 60  LDREEQSSYTLTVTATDGGGPPLSSTATVTITVLDVNDN 98

Cadherins are glycoproteins involved in Ca2+-mediated cell-cell adhesion. The cadherin repeat domains occur as tandem repeats in the extracellular regions, which are thought to mediate cell-cell contact when bound to calcium. They play numerous roles in cell fate, signalling, proliferation, differentiation, and migration; members include E-, N-, P-, T-, VE-, CNR-, proto-, and FAT-family cadherin, desmocollin, and desmoglein, a large variety of domain architectures with varying repeat copy numbers. Cadherin-repeat containing proteins exist as monomers, homodimers, or heterodimers. Length = 98
>gnl|CDD|214520 smart00112, CA, Cadherin repeats Back     alignment and domain information
>gnl|CDD|215665 pfam00028, Cadherin, Cadherin domain Back     alignment and domain information
>gnl|CDD|206637 cd11304, Cadherin_repeat, Cadherin tandem repeat domain Back     alignment and domain information
>gnl|CDD|214520 smart00112, CA, Cadherin repeats Back     alignment and domain information
>gnl|CDD|206637 cd11304, Cadherin_repeat, Cadherin tandem repeat domain Back     alignment and domain information
>gnl|CDD|214520 smart00112, CA, Cadherin repeats Back     alignment and domain information
>gnl|CDD|215665 pfam00028, Cadherin, Cadherin domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 653
KOG4289|consensus 2531 100.0
KOG1219|consensus 4289 100.0
KOG4289|consensus 2531 100.0
KOG1219|consensus 4289 100.0
cd00031199 CA Cadherin repeat domain; Cadherins are glycoprot 99.97
cd00031199 CA Cadherin repeat domain; Cadherins are glycoprot 99.93
PF0002893 Cadherin: Cadherin domain; InterPro: IPR002126 Cad 99.7
smart0011279 CA Cadherin repeats. Cadherins are glycoproteins i 99.59
KOG1834|consensus 952 99.59
PF0002893 Cadherin: Cadherin domain; InterPro: IPR002126 Cad 99.52
smart0011279 CA Cadherin repeats. Cadherins are glycoproteins i 99.44
KOG1834|consensus 952 99.11
PF0826684 Cadherin_2: Cadherin-like; InterPro: IPR013164 Cad 97.05
PF0875890 Cadherin_pro: Cadherin prodomain like; InterPro: I 96.52
PF0875890 Cadherin_pro: Cadherin prodomain like; InterPro: I 96.21
TIGR0196599 VCBS_repeat VCBS repeat. This domain of about 100 95.8
smart0073697 CADG Dystroglycan-type cadherin-like domains. Cadh 95.75
TIGR0196599 VCBS_repeat VCBS repeat. This domain of about 100 95.66
PF0826684 Cadherin_2: Cadherin-like; InterPro: IPR013164 Cad 95.34
PF13750158 Big_3_3: Bacterial Ig-like domain (group 3) 94.32
PF13750158 Big_3_3: Bacterial Ig-like domain (group 3) 93.32
smart0073697 CADG Dystroglycan-type cadherin-like domains. Cadh 92.78
TIGR00845 928 caca sodium/calcium exchanger 1. This model is spe 91.78
TIGR00845 928 caca sodium/calcium exchanger 1. This model is spe 85.7
PF0534549 He_PIG: Putative Ig domain; InterPro: IPR008009 Th 83.99
>KOG4289|consensus Back     alignment and domain information 
Probab=100.00  E-value=8.5e-80  Score=673.20  Aligned_cols=542  Identities=26%  Similarity=0.367  Sum_probs=481.9

Q ss_pred             CCcceeeEEEEEEEEeccCCCCcCCCCCceEEecCCCCCCcEEEEEEEecCCCCCCceEEEEEecCCCCCcceEEEcCCC
Q psy1887           2 DSRNIAGFEVVVVVDDVQDTPPIFINIQPVIQLAPNLTMNDVLTKITAIDGDKGHPRTIKYGLVSEGHPMTVFFTINELT   81 (653)
Q Consensus         2 d~~~~~~~~v~I~V~DvNDn~P~F~~~~~~~~V~E~~~~g~~i~~v~A~D~D~g~n~~i~ysl~~~~~~~~~~F~Id~~t   81 (653)
                      |-|-+++..|.|.|+|+|||+|+|.+.+|.-++.||.++|+.|.+++|+|.|+++|+.|.|+|..+..  .+.|.||+.+
T Consensus       246 ~P~~SAtttv~V~V~D~nDhsPvFEq~~Y~e~lREn~evGy~vLtvrAtD~Dsp~Nani~Yrl~eg~~--~~~f~in~rS  323 (2531)
T KOG4289|consen  246 DPRRSATTTVTVLVLDTNDHSPVFEQDEYREELRENLEVGYEVLTVRATDGDSPPNANIRYRLLEGNA--KNVFEINPRS  323 (2531)
T ss_pred             CCcccceeEEEEEEeecCCCCcccchhHHHHHHhhccccCceEEEEEeccCCCCCCCceEEEecCCCc--cceeEEcCcc
Confidence            55778999999999999999999999999999999999999999999999999999999999988733  3589999999


Q ss_pred             CCCCC--------------------------ccEEEEEEEEeeecCCCceeccccCeEEEEeecCCCCceEEEEEEEecC
Q psy1887          82 GPKMS--------------------------PQVFLLVLMCYSVVANYPVFDISTQMRSLLIPASVKLGTIIYRLRASDS  135 (653)
Q Consensus        82 G~~~~--------------------------~~~~~vvi~v~d~Nd~~P~f~~~~~~~~~~v~E~~~~gt~i~~v~a~D~  135 (653)
                      |++.+                          +....|.|+|.|.|||+|.|....|  .+.|.|+..++++|++|+|+|.
T Consensus       324 GvI~T~a~lDRE~~~~y~L~VeAsDqG~~pgp~Ta~V~itV~D~NDNaPqFse~~Y--vvqv~Edvt~~avvlrV~AtDr  401 (2531)
T KOG4289|consen  324 GVISTRAPLDREELESYQLDVEASDQGRPPGPRTAMVEITVEDENDNAPQFSEKRY--VVQVREDVTPPAVVLRVTATDR  401 (2531)
T ss_pred             ceeeccCccCHHhhhheEEEEEeccCCCCCCCceEEEEEEEEecCCCCccccccce--EEEecccCCCCceEEEEEeccc
Confidence            99622                          2345577899999999999999987  9999999999999999999999


Q ss_pred             CCC--cceEEEe-cCCCceEEEEeeccCCCCCCeeEEEEEEccccCC-CceEEEEEEEEECCCCC--eeeeEEEEEEecC
Q psy1887         136 DKD--YPLTFDA-TDFGSYVVKIKSLPCSKNSSFCEANVYLDRVLVP-GQVFQFRIIVKDTRGDT--TTVPTSLTATDAA  209 (653)
Q Consensus       136 D~~--~~~~y~i-~~~~~~~f~i~~~~~~~~~~~~~g~i~l~~~le~-~~~~~~~v~v~d~~g~~--~~~~~~i~v~~~~  209 (653)
                      |.+  ..++|+| ++++...|.|+..         +|.+.+..+|+. ...|.++|+|+|.+.+.  ...-+.|+|.++|
T Consensus       402 D~g~Ng~VHYsi~Sgn~~G~f~id~~---------tGel~vv~plD~e~~~ytl~IrAqDggrPpLsn~sgl~iqVlDIN  472 (2531)
T KOG4289|consen  402 DKGTNGKVHYSIASGNGRGQFYIDSL---------TGELDVVEPLDFENSEYTLRIRAQDGGRPPLSNTSGLVIQVLDIN  472 (2531)
T ss_pred             CCCcCceEEEEeeccCccccEEEecc---------cceEEEeccccccCCeeEEEEEcccCCCCCccCCCceEEEEEecC
Confidence            987  5899999 7788889999875         899999999953 33789999888876554  3344568888888


Q ss_pred             CCCCCCCCCC--------------------------------------CeEEEEeCCCcEEEEeecCC-CCcceEEEEE-
Q psy1887         210 LNINAQFPHI--------------------------------------PGVIVVPEVLGTYLLWRHLS-GPKNMYLMRE-  249 (653)
Q Consensus       210 ~~~~p~~~~~--------------------------------------~~~~~i~e~~G~i~~~~~lD-e~~~~y~l~~-  249 (653)
                       |+.|+|-..                                      .+.|.|++.+|.|++.+.|| |....|.|.+ 
T Consensus       473 -DhaPifvstpfq~tvlEnv~lg~~v~~vqaidadsg~na~l~y~laG~~pf~I~~~SG~Itvtk~ldrEt~~~ysl~V~  551 (2531)
T KOG4289|consen  473 -DHAPIFVSTPFQATVLENVPLGYLVCHVQAIDADSGENARLHYSLAGVGPFQINNGSGWITVTKELDRETVEHYSLGVE  551 (2531)
T ss_pred             -CCCceeEechhhhhhhhcccccceEEEEecccCCCCcccceeeeeccCCCeeEecCCceEEEeecccccccceEEEEEE
Confidence             888887322                                      24577888889999999999 9888888876 


Q ss_pred             --------------------------------------------------------------------------------
Q psy1887         250 --------------------------------------------------------------------------------  249 (653)
Q Consensus       250 --------------------------------------------------------------------------------  249 (653)
                                                                                                      
T Consensus       552 ard~gtp~l~tstsI~Vtv~dvndndP~Ft~~eytl~inED~pvgsSI~tvtAvD~d~~s~ityqi~g~ntrn~Fsi~si  631 (2531)
T KOG4289|consen  552 ARDHGTPPLSTSTSISVTVLDVNDNDPTFTQKEYTLRINEDAPVGSSIVTVTAVDRDANSVITYQITGGNTRNRFSISSI  631 (2531)
T ss_pred             EcCCCCCcccccceEEEEecccCCCCCccccCceEEEecCCccccceEEEEEEeccccccceEEEecCCcccccceeecc
Confidence                                                                                            


Q ss_pred             -----EEeeCCccccceecCCCcEEEEEEEEEecccCCCCCCCeEEEEEEEEEEccCCCCCeecCCceEEEEeCCCCCCc
Q psy1887         250 -----IRLSKPYRELHTVASGQPVILMVLAEEERKDLNEPSPQSSTATIALVFDQAINTPPYFDTVQYITHLDENSPQGT  324 (653)
Q Consensus       250 -----~~~~~~ld~~~~~~~~~~~~l~V~A~d~~~d~~~~~~~s~~~~v~i~V~dvNd~~P~f~~~~~~~~v~En~~~gt  324 (653)
                           +.+..|+++..    -++|.+.|+|+|     |   .+..++.|.|.|.|.|-+.|.|....|+++|+|+.|.|+
T Consensus       632 ~g~Glitlalp~dkKq----e~~~vl~vtAtD-----g---~l~d~~~V~v~I~danThrpvFqs~pfTvsI~e~rP~G~  699 (2531)
T KOG4289|consen  632 GGGGLITLALPLDKKQ----ERQYVLAVTATD-----G---TLQDTCSVNVNITDANTHRPVFQSSPFTVSINEDRPLGT  699 (2531)
T ss_pred             CCcceEEeecchhhcc----cceEEEEEEecC-----C---ccccceEEEEEeeecccCCcccccCCeeEeeccCCcCCc
Confidence                 33333444332    456789999986     2   377889999999999999999999999999999999999


Q ss_pred             EEEeeeceeeEEeeCCCCcceEEEEEEecCCCcEEEcccceeeeeeEEEEEecCCCCCccCCCeEEEEEEEEECCCCCCC
Q psy1887         325 ALIFAESFHTQVTDDNMGKNGIFSLTLENNNGTFEIWPSVVERKAQFTIRVRNNKNLDYERTRTLSFVIVAKEISSDSSS  404 (653)
Q Consensus       325 ~v~~v~~~~~~a~D~D~g~n~~~~~~~~~~~~~F~I~~~tg~~~~~~~i~l~~~~~LD~E~~~~~~l~V~a~D~~~~~~~  404 (653)
                      .|..     |+|+|.|.|.|++++|.+.+.  .|+|++.+|.        +.+...||||.+-.|.+.+.|+|.+    .
T Consensus       700 tvvt-----lsasd~D~geNARI~y~led~--~Frid~dsg~--------i~t~~~ld~edqvtytl~itA~D~~----~  760 (2531)
T KOG4289|consen  700 TVVT-----LSASDEDTGENARITYILEDE--AFRIDPDSGA--------IYTQAELDYEDQVTYTLAITARDNG----I  760 (2531)
T ss_pred             eeEE-----EecccCCCCccceEEEEeccc--ceeecCCCCc--------eEEeeeeecccceeeEeeeeecCCC----C
Confidence            9997     699999999999999965544  4999999998        7778999999999999999999998    7


Q ss_pred             CCceEEEEEEEEEeecCCCCCeecccceEEEeeCCCCCCcEEEEEEEeeCCCCCCceEEEEEEcCC-CCcceEEeCCCCe
Q psy1887         405 NLLSSQAPVLVYINDVNDNPPVFTATLYTAKIPENATAGEKVVQVKATDVDTNLGGEILYTAILGY-KNSSLELDAHTGD  483 (653)
Q Consensus       405 ~~~s~~~~v~I~V~DvNDn~P~f~~~~y~~~V~E~~~~gt~v~~v~a~D~D~g~n~~i~y~i~~~~-~~~~F~Id~~tG~  483 (653)
                      |++..+++|.|.|.|+|||+|+|..+.|.++|.|++|++|.+++|+|+|+|.|.|+.+.|.+-.+. ..+.|.|++.+|.
T Consensus       761 pq~adtttveV~v~diNDnaPqf~assyt~sV~Ed~Pv~TsvlQVSatDaD~g~Ng~v~y~~qg~~d~p~~F~IEptSGv  840 (2531)
T KOG4289|consen  761 PQKADTTTVEVLVNDINDNAPQFLASSYTGSVFEDAPVFTSVLQVSATDADSGPNGRVYYTFQGGDDGPGDFYIEPTSGV  840 (2531)
T ss_pred             CCcCccEEEEEEeecccccCcccchhhceeEeecCCCCcceEEEEEEeccCCCCCceEEEEecCCCCCCCceEEccCcce
Confidence            889999999999999999999999999999999999999999999999999999999999865442 3467999999999


Q ss_pred             EEEEcCccCCccCccEEEEEEEEEECCCCCceEEEEEEEEEEecCCCCCeEeecCcEEEEecCCCCCeEEEEEEEEeCCC
Q psy1887         484 ITIANGQQFDREEASEYKFQVEARDMQGLGLRTVVPLQLTILDVNDNAPIFVQTPFEFVLASDSRNFSERTFIKATDQDA  563 (653)
Q Consensus       484 i~~~~~~~lD~E~~~~~~l~V~a~D~g~~~~~~~~~v~I~V~DvNDn~P~f~~~~y~~~v~e~~~~g~~v~~v~A~D~D~  563 (653)
                      |++.  ..||||....|.|.+.|+|.|.|++++.+.|+|+|+|+|||||+|.++.|...|.||.+.|+.|++|.|.|||+
T Consensus       841 iRtl--~rLdRE~~avy~L~a~avDrg~p~ls~~~eItvtvldvNDnaPvfe~~e~e~~I~enspvgs~va~i~a~dpdE  918 (2531)
T KOG4289|consen  841 IRTL--RRLDRENVAVYVLAAYAVDRGNPPLSAPVEITVTVLDVNDNAPVFEQDELELFIEENSPVGSVVALITADDPDE  918 (2531)
T ss_pred             eehh--hhhcchheeEEEEEEEEeeCCCCCcCCceEEEEEEEecCCCCCCCCCcceeeEEeecCccceeeEEEEccCCCc
Confidence            9998  88999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCeEEEEEEeCCCCCcEEEEcCCCc
Q psy1887         564 EAPNNIVRYEIISGNYDNKFSLHPETGV  591 (653)
Q Consensus       564 ~~~n~~i~Y~i~~~~~~~~F~Id~~tG~  591 (653)
                      | +|+.|.|+|..|+....|.++...|+
T Consensus       919 G-~NA~IsYqIvgg~d~~~fq~de~~~~  945 (2531)
T KOG4289|consen  919 G-PNAHISYQIVGGNDPELFQLDEFSGE  945 (2531)
T ss_pred             C-CcceEEEeeccCccHHHHHHHHhhhh
Confidence            7 89999999999999999999988874

>KOG1219|consensus Back     alignment and domain information
>KOG4289|consensus Back     alignment and domain information
>KOG1219|consensus Back     alignment and domain information
>cd00031 CA Cadherin repeat domain; Cadherins are glycoproteins involved in Ca2+-mediated cell-cell adhesion; these domains occur as repeats in the extracellular regions which are thought to mediate cell-cell contact when bound to calcium; plays a role in cell fate, signalling, proliferation, differentiation, and migration; members include E-, N-, P-, T-, VE-,CNR-,proto-,and FAT-family cadherin, desmocollin, and desmoglein, exists as monomers or dimers (hetero- and homo-); two copies of the repeat are present here Back     alignment and domain information
>cd00031 CA Cadherin repeat domain; Cadherins are glycoproteins involved in Ca2+-mediated cell-cell adhesion; these domains occur as repeats in the extracellular regions which are thought to mediate cell-cell contact when bound to calcium; plays a role in cell fate, signalling, proliferation, differentiation, and migration; members include E-, N-, P-, T-, VE-,CNR-,proto-,and FAT-family cadherin, desmocollin, and desmoglein, exists as monomers or dimers (hetero- and homo-); two copies of the repeat are present here Back     alignment and domain information
>PF00028 Cadherin: Cadherin domain; InterPro: IPR002126 Cadherins are a family of adhesion molecules that mediate Ca2+-dependent cell-cell adhesion in all solid tissues of the organism which modulate a wide variety of processes including cell polarisation and migration [, ,] Back     alignment and domain information
>smart00112 CA Cadherin repeats Back     alignment and domain information
>KOG1834|consensus Back     alignment and domain information
>PF00028 Cadherin: Cadherin domain; InterPro: IPR002126 Cadherins are a family of adhesion molecules that mediate Ca2+-dependent cell-cell adhesion in all solid tissues of the organism which modulate a wide variety of processes including cell polarisation and migration [, ,] Back     alignment and domain information
>smart00112 CA Cadherin repeats Back     alignment and domain information
>KOG1834|consensus Back     alignment and domain information
>PF08266 Cadherin_2: Cadherin-like; InterPro: IPR013164 Cadherins are a family of adhesion molecules that mediate Ca2+-dependent cell-cell adhesion in all solid tissues of the organism which modulate a wide variety of processes including cell polarisation and migration [, ,] Back     alignment and domain information
>PF08758 Cadherin_pro: Cadherin prodomain like; InterPro: IPR014868 Cadherins are a group of proteins that mediate calcium dependent cell-cell adhesion Back     alignment and domain information
>PF08758 Cadherin_pro: Cadherin prodomain like; InterPro: IPR014868 Cadherins are a group of proteins that mediate calcium dependent cell-cell adhesion Back     alignment and domain information
>TIGR01965 VCBS_repeat VCBS repeat Back     alignment and domain information
>smart00736 CADG Dystroglycan-type cadherin-like domains Back     alignment and domain information
>TIGR01965 VCBS_repeat VCBS repeat Back     alignment and domain information
>PF08266 Cadherin_2: Cadherin-like; InterPro: IPR013164 Cadherins are a family of adhesion molecules that mediate Ca2+-dependent cell-cell adhesion in all solid tissues of the organism which modulate a wide variety of processes including cell polarisation and migration [, ,] Back     alignment and domain information
>PF13750 Big_3_3: Bacterial Ig-like domain (group 3) Back     alignment and domain information
>PF13750 Big_3_3: Bacterial Ig-like domain (group 3) Back     alignment and domain information
>smart00736 CADG Dystroglycan-type cadherin-like domains Back     alignment and domain information
>TIGR00845 caca sodium/calcium exchanger 1 Back     alignment and domain information
>TIGR00845 caca sodium/calcium exchanger 1 Back     alignment and domain information
>PF05345 He_PIG: Putative Ig domain; InterPro: IPR008009 This alignment represents the conserved core region of a ~90 residue repeat found in several haemagglutinins and other cell surface proteins Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query653
3q2v_A 550 Crystal Structure Of Mouse E-Cadherin Ectodomain Le 1e-13
1edh_A226 E-Cadherin Domains 1 And 2 In Complex With Calcium 8e-13
1edh_A226 E-Cadherin Domains 1 And 2 In Complex With Calcium 9e-04
2a62_A322 Crystal Structure Of Mouse Cadherin-8 Ec1-3 Length 1e-12
2a62_A322 Crystal Structure Of Mouse Cadherin-8 Ec1-3 Length 6e-05
3lnd_A207 Crystal Structure Of Cadherin-6 Ec12 W4a Length = 2 8e-11
1ff5_A219 Structure Of E-Cadherin Double Domain Length = 219 9e-11
1ff5_A219 Structure Of E-Cadherin Double Domain Length = 219 9e-04
1q55_A 880 W-Shaped Trans Interactions Of Cadherins Model Base 9e-11
1l3w_A 546 C-Cadherin Ectodomain Length = 546 1e-10
3q2w_A 559 Crystal Structure Of Mouse N-Cadherin Ectodomain Le 4e-10
2a4e_A215 Crystal Structure Of Mouse Cadherin-11 Ec1-2 Length 6e-10
2yst_A119 Solution Structure Of The Third Cadherin Domain Fro 1e-09
3mvs_A210 Structure Of The N-Terminus Of Cadherin 23 Length = 3e-08
3q2n_A213 Mouse E-Cadherin Ec1-2 L175d Mutant Length = 213 4e-08
1q1p_A212 E-Cadherin Activation Length = 212 5e-08
1q1p_A212 E-Cadherin Activation Length = 212 8e-04
2qvf_B213 Mouse E-cadherin Domains 1,2 Length = 213 5e-08
2qvf_B213 Mouse E-cadherin Domains 1,2 Length = 213 8e-04
3lni_A213 Crystal Structure Of E-Cadherin Ec12 E89a Length = 5e-08
3lng_A215 Crystal Structure Of E-Cadherin Ec12 Aa Extension L 5e-08
3lng_A215 Crystal Structure Of E-Cadherin Ec12 Aa Extension L 8e-04
3q2l_A213 Mouse E-Cadherin Ec1-2 V81d Mutant Length = 213 5e-08
3q2l_A213 Mouse E-Cadherin Ec1-2 V81d Mutant Length = 213 7e-04
3lne_A213 Crystal Structure Of E-Cadherin Ec12 K14e Length = 5e-08
3lnh_A213 Crystal Structure Of E-Cadherin Ec12 W2a Length = 2 6e-08
3lnh_A213 Crystal Structure Of E-Cadherin Ec12 W2a Length = 2 9e-04
3lnf_A213 Crystal Structure Of E-Cadherin Ec12 K14ew2a Length 6e-08
3qrb_A213 Crystal Structure Of E-Cadherin Ec1-2 P5a P6a Lengt 6e-08
4aqe_A214 Crystal Structure Of Deafness Associated Mutant Mou 8e-08
2wcp_A214 Crystal Structure Of Mouse Cadherin-23 Ec1-2 Length 1e-07
3k5r_A218 Crystal Structure Of Mouse T-Cadherin Ec1 Ec2 Lengt 2e-07
2ee0_A114 Solution Structures Of The Ca Domain Of Human Proto 5e-07
2wd0_A214 Crystal Structure Of Nonsyndromic Deafness (Dfnb12) 6e-07
2o72_A213 Crystal Structure Analysis Of Human E-Cadherin (1-2 1e-06
2qvi_A215 Crystal Structure Of N-Cadherin Domains Ec12 Length 2e-06
1ncj_A215 N-Cadherin, Two-Domain Fragment Length = 215 2e-06
3k5s_A217 Crystal Structure Of Chicken T-Cadherin Ec1 Ec2 Len 4e-06
3ppe_A203 Crystal Structure Of Chicken Ve-Cadherin Ec1-2 Leng 1e-05
3ppe_A203 Crystal Structure Of Chicken Ve-Cadherin Ec1-2 Leng 1e-04
>pdb|3Q2V|A Chain A, Crystal Structure Of Mouse E-Cadherin Ectodomain Length = 550 Back     alignment and structure 
Iteration: 1

 Score = 75.1 bits (183), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 52/159 (32%), Positives = 81/159 (50%), Gaps = 11/159 (6%)
Query: 413 VLVYINDVNDNPPVFTATLYTAKIPENATAGEKVVQVKATDVDTNLG---GEILYTAI-- 467
           +++ + D NDN P FT  ++   + E A  G  V++V ATD D ++      I YT +  
Sbjct: 94  IVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQ 153
Query: 468 ---LGYKNSSLELDAHTGDITIANGQQFDREEASEYKFQVEARDMQGLGLRTVVPLQLTI 524
              L +KN    ++  TG I++      DRE    Y   V+A D+QG GL T     +T+
Sbjct: 154 DPELPHKNM-FTVNRDTGVISVLTSG-LDRESYPTYTLVVQAADLQGEGLSTTAKAVITV 211
Query: 525 LDVNDNAPIFVQTPFEFVLASDSRNFSERTFIKATDQDA 563
            D+NDNAP+F  + ++  +  +  N    T +K TD DA
Sbjct: 212 KDINDNAPVFNPSTYQGQVPENEVNARIAT-LKVTDDDA 249
>pdb|1EDH|A Chain A, E-Cadherin Domains 1 And 2 In Complex With Calcium Length = 226 Back     alignment and structure
>pdb|1EDH|A Chain A, E-Cadherin Domains 1 And 2 In Complex With Calcium Length = 226 Back     alignment and structure
>pdb|2A62|A Chain A, Crystal Structure Of Mouse Cadherin-8 Ec1-3 Length = 322 Back     alignment and structure
>pdb|2A62|A Chain A, Crystal Structure Of Mouse Cadherin-8 Ec1-3 Length = 322 Back     alignment and structure
>pdb|3LND|A Chain A, Crystal Structure Of Cadherin-6 Ec12 W4a Length = 207 Back     alignment and structure
>pdb|1FF5|A Chain A, Structure Of E-Cadherin Double Domain Length = 219 Back     alignment and structure
>pdb|1FF5|A Chain A, Structure Of E-Cadherin Double Domain Length = 219 Back     alignment and structure
>pdb|1Q55|A Chain A, W-Shaped Trans Interactions Of Cadherins Model Based On Fitting C- Cadherin (1l3w) To 3d Map Of Desmosomes Obtained By Electron Tomography Length = 880 Back     alignment and structure
>pdb|1L3W|A Chain A, C-Cadherin Ectodomain Length = 546 Back     alignment and structure
>pdb|3Q2W|A Chain A, Crystal Structure Of Mouse N-Cadherin Ectodomain Length = 559 Back     alignment and structure
>pdb|2A4E|A Chain A, Crystal Structure Of Mouse Cadherin-11 Ec1-2 Length = 215 Back     alignment and structure
>pdb|2YST|A Chain A, Solution Structure Of The Third Cadherin Domain From Human Protocadherin 7 Length = 119 Back     alignment and structure
>pdb|3MVS|A Chain A, Structure Of The N-Terminus Of Cadherin 23 Length = 210 Back     alignment and structure
>pdb|3Q2N|A Chain A, Mouse E-Cadherin Ec1-2 L175d Mutant Length = 213 Back     alignment and structure
>pdb|1Q1P|A Chain A, E-Cadherin Activation Length = 212 Back     alignment and structure
>pdb|1Q1P|A Chain A, E-Cadherin Activation Length = 212 Back     alignment and structure
>pdb|2QVF|B Chain B, Mouse E-cadherin Domains 1,2 Length = 213 Back     alignment and structure
>pdb|2QVF|B Chain B, Mouse E-cadherin Domains 1,2 Length = 213 Back     alignment and structure
>pdb|3LNI|A Chain A, Crystal Structure Of E-Cadherin Ec12 E89a Length = 213 Back     alignment and structure
>pdb|3LNG|A Chain A, Crystal Structure Of E-Cadherin Ec12 Aa Extension Length = 215 Back     alignment and structure
>pdb|3LNG|A Chain A, Crystal Structure Of E-Cadherin Ec12 Aa Extension Length = 215 Back     alignment and structure
>pdb|3Q2L|A Chain A, Mouse E-Cadherin Ec1-2 V81d Mutant Length = 213 Back     alignment and structure
>pdb|3Q2L|A Chain A, Mouse E-Cadherin Ec1-2 V81d Mutant Length = 213 Back     alignment and structure
>pdb|3LNE|A Chain A, Crystal Structure Of E-Cadherin Ec12 K14e Length = 213 Back     alignment and structure
>pdb|3LNH|A Chain A, Crystal Structure Of E-Cadherin Ec12 W2a Length = 213 Back     alignment and structure
>pdb|3LNH|A Chain A, Crystal Structure Of E-Cadherin Ec12 W2a Length = 213 Back     alignment and structure
>pdb|3LNF|A Chain A, Crystal Structure Of E-Cadherin Ec12 K14ew2a Length = 213 Back     alignment and structure
>pdb|3QRB|A Chain A, Crystal Structure Of E-Cadherin Ec1-2 P5a P6a Length = 213 Back     alignment and structure
>pdb|4AQE|A Chain A, Crystal Structure Of Deafness Associated Mutant Mouse Cadherin-23 Ec1-2s70p And Protocadherin-15 Ec1-2 Form I Length = 214 Back     alignment and structure
>pdb|2WCP|A Chain A, Crystal Structure Of Mouse Cadherin-23 Ec1-2 Length = 214 Back     alignment and structure
>pdb|3K5R|A Chain A, Crystal Structure Of Mouse T-Cadherin Ec1 Ec2 Length = 218 Back     alignment and structure
>pdb|2EE0|A Chain A, Solution Structures Of The Ca Domain Of Human Protocadherin 9 Length = 114 Back     alignment and structure
>pdb|2WD0|A Chain A, Crystal Structure Of Nonsyndromic Deafness (Dfnb12) Associated Mutant D124g Of Mouse Cadherin-23 Ec1-2 Length = 214 Back     alignment and structure
>pdb|2O72|A Chain A, Crystal Structure Analysis Of Human E-Cadherin (1-213) Length = 213 Back     alignment and structure
>pdb|2QVI|A Chain A, Crystal Structure Of N-Cadherin Domains Ec12 Length = 215 Back     alignment and structure
>pdb|1NCJ|A Chain A, N-Cadherin, Two-Domain Fragment Length = 215 Back     alignment and structure
>pdb|3K5S|A Chain A, Crystal Structure Of Chicken T-Cadherin Ec1 Ec2 Length = 217 Back     alignment and structure
>pdb|3PPE|A Chain A, Crystal Structure Of Chicken Ve-Cadherin Ec1-2 Length = 203 Back     alignment and structure
>pdb|3PPE|A Chain A, Crystal Structure Of Chicken Ve-Cadherin Ec1-2 Length = 203 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query653
1l3w_A 546 EP-cadherin, C-cadherin; cell adhesion, calcium bi 4e-45
1l3w_A546 EP-cadherin, C-cadherin; cell adhesion, calcium bi 1e-43
1l3w_A546 EP-cadherin, C-cadherin; cell adhesion, calcium bi 3e-36
1l3w_A546 EP-cadherin, C-cadherin; cell adhesion, calcium bi 1e-25
1l3w_A 546 EP-cadherin, C-cadherin; cell adhesion, calcium bi 3e-22
1q55_A 880 EP-cadherin, C-cadherin; trans interaction, desmos 2e-44
1q55_A 880 EP-cadherin, C-cadherin; trans interaction, desmos 1e-42
1q55_A 880 EP-cadherin, C-cadherin; trans interaction, desmos 6e-28
1q55_A880 EP-cadherin, C-cadherin; trans interaction, desmos 2e-24
1q55_A 880 EP-cadherin, C-cadherin; trans interaction, desmos 4e-22
1q55_A880 EP-cadherin, C-cadherin; trans interaction, desmos 3e-06
2a62_A322 Cadherin-8; extracellular domain, homodimer, calci 3e-44
2a62_A322 Cadherin-8; extracellular domain, homodimer, calci 3e-30
3q2v_A550 Cadherin-1; cell adhesion, calcium binding; HET: M 1e-43
3q2v_A 550 Cadherin-1; cell adhesion, calcium binding; HET: M 3e-42
3q2v_A 550 Cadherin-1; cell adhesion, calcium binding; HET: M 6e-35
3q2v_A550 Cadherin-1; cell adhesion, calcium binding; HET: M 3e-27
3q2v_A 550 Cadherin-1; cell adhesion, calcium binding; HET: M 2e-21
3q2v_A550 Cadherin-1; cell adhesion, calcium binding; HET: M 4e-07
3q2w_A 559 Cadherin-2; cell adhesion, calcium binding; HET: M 1e-42
3q2w_A 559 Cadherin-2; cell adhesion, calcium binding; HET: M 2e-34
3q2w_A559 Cadherin-2; cell adhesion, calcium binding; HET: M 6e-30
3q2w_A559 Cadherin-2; cell adhesion, calcium binding; HET: M 6e-13
3ubh_A419 Neural-cadherin; cell adhesion; 2.70A {Drosophila 6e-42
3ubh_A419 Neural-cadherin; cell adhesion; 2.70A {Drosophila 3e-41
3ubh_A419 Neural-cadherin; cell adhesion; 2.70A {Drosophila 2e-28
3ubh_A 419 Neural-cadherin; cell adhesion; 2.70A {Drosophila 4e-18
3ubf_A316 Neural-cadherin; cell adhesion; 2.50A {Drosophila 4e-40
3ubf_A316 Neural-cadherin; cell adhesion; 2.50A {Drosophila 4e-40
3ubf_A316 Neural-cadherin; cell adhesion; 2.50A {Drosophila 1e-20
3ubf_A316 Neural-cadherin; cell adhesion; 2.50A {Drosophila 4e-04
3mvs_A210 Cadherin-23, otocadherin; adhesion, extracellular 2e-38
3mvs_A210 Cadherin-23, otocadherin; adhesion, extracellular 5e-36
2a4e_A215 Cadherin-11; dimer, calcium binding, cell adhesion 1e-37
2a4e_A215 Cadherin-11; dimer, calcium binding, cell adhesion 5e-28
2a4e_A215 Cadherin-11; dimer, calcium binding, cell adhesion 6e-15
2x2u_A246 Proto-oncogene tyrosine-protein kinase receptor RE 4e-36
2x2u_A246 Proto-oncogene tyrosine-protein kinase receptor RE 5e-22
3qrb_A213 Cadherin-1; cell adhesion; HET: PGE; 1.80A {Mus mu 3e-33
3qrb_A213 Cadherin-1; cell adhesion; HET: PGE; 1.80A {Mus mu 9e-29
3qrb_A213 Cadherin-1; cell adhesion; HET: PGE; 1.80A {Mus mu 1e-05
2qvi_A215 Cadherin-2; beta barrel, strand SWAP, domain SWAP, 3e-32
2qvi_A215 Cadherin-2; beta barrel, strand SWAP, domain SWAP, 4e-29
2qvi_A215 Cadherin-2; beta barrel, strand SWAP, domain SWAP, 9e-06
3ppe_A203 Vascular endothelial cadherin; extracellular cadhe 4e-32
3ppe_A203 Vascular endothelial cadherin; extracellular cadhe 5e-26
3ppe_A203 Vascular endothelial cadherin; extracellular cadhe 2e-08
2yst_A119 Protocadherin-7; BH-PCDH, beta-sandwich, structura 5e-32
2yst_A119 Protocadherin-7; BH-PCDH, beta-sandwich, structura 1e-13
2yst_A119 Protocadherin-7; BH-PCDH, beta-sandwich, structura 5e-08
3lnd_A207 CDH6 protein, cadherin 6; cell adhesion, cell memb 5e-32
3lnd_A207 CDH6 protein, cadherin 6; cell adhesion, cell memb 4e-27
3lnd_A207 CDH6 protein, cadherin 6; cell adhesion, cell memb 8e-08
3k5r_A218 Cadherin 13; mouse, structural protein; 2.00A {Mus 5e-31
3k5r_A218 Cadherin 13; mouse, structural protein; 2.00A {Mus 2e-29
3k5r_A218 Cadherin 13; mouse, structural protein; 2.00A {Mus 2e-04
2ee0_A114 Protocadherin-9; Ca domain, structural genomics, N 5e-26
2ee0_A114 Protocadherin-9; Ca domain, structural genomics, N 8e-08
2ee0_A114 Protocadherin-9; Ca domain, structural genomics, N 2e-06
1ncg_A110 N-cadherin; cell adhesion protein; 2.10A {Mus musc 8e-19
1ncg_A110 N-cadherin; cell adhesion protein; 2.10A {Mus musc 3e-09
2yqg_A123 Desmoglein-2, HDGC; cadherin, structural genomics, 1e-18
2yqg_A123 Desmoglein-2, HDGC; cadherin, structural genomics, 1e-08
3k6i_A99 T-cadherin; cell adhesion, alternative splicing, c 6e-14
3k6d_A99 T-cadherin; cell adhesion; 1.80A {Xenopus laevis} 1e-13
3k6f_A100 T-cadherin; cell adhesion, calcium, cell membrane, 1e-13
2omz_B105 Epithelial-cadherin; leucine-rich-repeat, nvasion 2e-12
1zvn_A99 Mn-cadherin; strand dimer, ----; 2.16A {Gallus gal 1e-10
1zxk_A98 Cadherin-8; strand dimer, cell adhesion; 2.00A {Mu 2e-09
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-08
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-05
>1l3w_A EP-cadherin, C-cadherin; cell adhesion, calcium binding, extracellular, ECT metal binding protein; HET: NAG NDG; 3.08A {Xenopus laevis} SCOP: b.1.6.1 b.1.6.1 b.1.6.1 b.1.6.1 b.1.6.1 Length = 546 Back     alignment and structure
 Score =  167 bits (426), Expect = 4e-45
 Identities = 52/217 (23%), Positives = 85/217 (39%), Gaps = 13/217 (5%)

Query: 378 NKNLDYERTRTLSFVIVAKEISSDSSSNLLSSQAPVLVYINDVNDNPPVFTATLYTAKIP 437
            + LD E          A       + + +     + + + D NDN P FT  ++   + 
Sbjct: 69  TRPLDREEYDKYVLSSHA----VSENGSPVEEPMEITINVIDQNDNRPKFTQDVFRGSVR 124

Query: 438 ENATAGEKVVQVKATDVDTNLGG---EILYTAILGYKNSSL----ELDAHTGDITIANGQ 490
           E    G +V+ V ATD D N+      + Y+ +       +     ++  TG I++  G 
Sbjct: 125 EGVQPGTQVMAVSATDEDDNIDSLNGVLSYSILKQDPEEPIPNLFTINRETGVISLI-GT 183

Query: 491 QFDREEASEYKFQVEARDMQGLGLRTVVPLQLTILDVNDNAPIFVQTPFEFVLASDSRNF 550
             DRE+  EY   V+A D++G GL       + I D NDNAPIF    +  ++  +    
Sbjct: 184 GLDREKFPEYTLTVQATDLEGAGLSVEGKAIIQITDANDNAPIFDPKTYTALVPENEIG- 242

Query: 551 SERTFIKATDQDAEAPNNIVRYEIISGNYDNKFSLHP 587
            E   +  TD D            I  N    F++  
Sbjct: 243 FEVQRLSVTDLDMPGTPAWQAVYKIRVNEGGFFNITT 279
>1l3w_A EP-cadherin, C-cadherin; cell adhesion, calcium binding, extracellular, ECT metal binding protein; HET: NAG NDG; 3.08A {Xenopus laevis} SCOP: b.1.6.1 b.1.6.1 b.1.6.1 b.1.6.1 b.1.6.1 Length = 546 Back     alignment and structure
>1l3w_A EP-cadherin, C-cadherin; cell adhesion, calcium binding, extracellular, ECT metal binding protein; HET: NAG NDG; 3.08A {Xenopus laevis} SCOP: b.1.6.1 b.1.6.1 b.1.6.1 b.1.6.1 b.1.6.1 Length = 546 Back     alignment and structure
>1l3w_A EP-cadherin, C-cadherin; cell adhesion, calcium binding, extracellular, ECT metal binding protein; HET: NAG NDG; 3.08A {Xenopus laevis} SCOP: b.1.6.1 b.1.6.1 b.1.6.1 b.1.6.1 b.1.6.1 Length = 546 Back     alignment and structure
>1l3w_A EP-cadherin, C-cadherin; cell adhesion, calcium binding, extracellular, ECT metal binding protein; HET: NAG NDG; 3.08A {Xenopus laevis} SCOP: b.1.6.1 b.1.6.1 b.1.6.1 b.1.6.1 b.1.6.1 Length = 546 Back     alignment and structure
>1q55_A EP-cadherin, C-cadherin; trans interaction, desmosome, junction, adhesion, structural protein; HET: NAG NDG; 30.00A {Mus musculus} SCOP: i.20.1.1 PDB: 1q5a_A* 1q5b_A* 1q5c_A* Length = 880 Back     alignment and structure
>1q55_A EP-cadherin, C-cadherin; trans interaction, desmosome, junction, adhesion, structural protein; HET: NAG NDG; 30.00A {Mus musculus} SCOP: i.20.1.1 PDB: 1q5a_A* 1q5b_A* 1q5c_A* Length = 880 Back     alignment and structure
>1q55_A EP-cadherin, C-cadherin; trans interaction, desmosome, junction, adhesion, structural protein; HET: NAG NDG; 30.00A {Mus musculus} SCOP: i.20.1.1 PDB: 1q5a_A* 1q5b_A* 1q5c_A* Length = 880 Back     alignment and structure
>1q55_A EP-cadherin, C-cadherin; trans interaction, desmosome, junction, adhesion, structural protein; HET: NAG NDG; 30.00A {Mus musculus} SCOP: i.20.1.1 PDB: 1q5a_A* 1q5b_A* 1q5c_A* Length = 880 Back     alignment and structure
>1q55_A EP-cadherin, C-cadherin; trans interaction, desmosome, junction, adhesion, structural protein; HET: NAG NDG; 30.00A {Mus musculus} SCOP: i.20.1.1 PDB: 1q5a_A* 1q5b_A* 1q5c_A* Length = 880 Back     alignment and structure
>1q55_A EP-cadherin, C-cadherin; trans interaction, desmosome, junction, adhesion, structural protein; HET: NAG NDG; 30.00A {Mus musculus} SCOP: i.20.1.1 PDB: 1q5a_A* 1q5b_A* 1q5c_A* Length = 880 Back     alignment and structure
>2a62_A Cadherin-8; extracellular domain, homodimer, calcium binding, adhesion; 4.50A {Mus musculus} Length = 322 Back     alignment and structure
>2a62_A Cadherin-8; extracellular domain, homodimer, calcium binding, adhesion; 4.50A {Mus musculus} Length = 322 Back     alignment and structure
>3q2v_A Cadherin-1; cell adhesion, calcium binding; HET: MAN; 3.40A {Mus musculus} Length = 550 Back     alignment and structure
>3q2v_A Cadherin-1; cell adhesion, calcium binding; HET: MAN; 3.40A {Mus musculus} Length = 550 Back     alignment and structure
>3q2v_A Cadherin-1; cell adhesion, calcium binding; HET: MAN; 3.40A {Mus musculus} Length = 550 Back     alignment and structure
>3q2v_A Cadherin-1; cell adhesion, calcium binding; HET: MAN; 3.40A {Mus musculus} Length = 550 Back     alignment and structure
>3q2v_A Cadherin-1; cell adhesion, calcium binding; HET: MAN; 3.40A {Mus musculus} Length = 550 Back     alignment and structure
>3q2v_A Cadherin-1; cell adhesion, calcium binding; HET: MAN; 3.40A {Mus musculus} Length = 550 Back     alignment and structure
>3q2w_A Cadherin-2; cell adhesion, calcium binding; HET: MAN NAG; 3.20A {Mus musculus} Length = 559 Back     alignment and structure
>3q2w_A Cadherin-2; cell adhesion, calcium binding; HET: MAN NAG; 3.20A {Mus musculus} Length = 559 Back     alignment and structure
>3q2w_A Cadherin-2; cell adhesion, calcium binding; HET: MAN NAG; 3.20A {Mus musculus} Length = 559 Back     alignment and structure
>3q2w_A Cadherin-2; cell adhesion, calcium binding; HET: MAN NAG; 3.20A {Mus musculus} Length = 559 Back     alignment and structure
>3ubh_A Neural-cadherin; cell adhesion; 2.70A {Drosophila melanogaster} Length = 419 Back     alignment and structure
>3ubh_A Neural-cadherin; cell adhesion; 2.70A {Drosophila melanogaster} Length = 419 Back     alignment and structure
>3ubh_A Neural-cadherin; cell adhesion; 2.70A {Drosophila melanogaster} Length = 419 Back     alignment and structure
>3ubh_A Neural-cadherin; cell adhesion; 2.70A {Drosophila melanogaster} Length = 419 Back     alignment and structure
>3ubf_A Neural-cadherin; cell adhesion; 2.50A {Drosophila melanogaster} PDB: 3ubg_A Length = 316 Back     alignment and structure
>3ubf_A Neural-cadherin; cell adhesion; 2.50A {Drosophila melanogaster} PDB: 3ubg_A Length = 316 Back     alignment and structure
>3ubf_A Neural-cadherin; cell adhesion; 2.50A {Drosophila melanogaster} PDB: 3ubg_A Length = 316 Back     alignment and structure
>3ubf_A Neural-cadherin; cell adhesion; 2.50A {Drosophila melanogaster} PDB: 3ubg_A Length = 316 Back     alignment and structure
>3mvs_A Cadherin-23, otocadherin; adhesion, extracellular domain, cell adhesion; 1.10A {Mus musculus} PDB: 2wcp_A 2whv_A 2wd0_A 2wbx_A Length = 210 Back     alignment and structure
>3mvs_A Cadherin-23, otocadherin; adhesion, extracellular domain, cell adhesion; 1.10A {Mus musculus} PDB: 2wcp_A 2whv_A 2wd0_A 2wbx_A Length = 210 Back     alignment and structure
>2a4e_A Cadherin-11; dimer, calcium binding, cell adhesion; 3.20A {Mus musculus} Length = 215 Back     alignment and structure
>2a4e_A Cadherin-11; dimer, calcium binding, cell adhesion; 3.20A {Mus musculus} Length = 215 Back     alignment and structure
>2a4e_A Cadherin-11; dimer, calcium binding, cell adhesion; 3.20A {Mus musculus} Length = 215 Back     alignment and structure
>2x2u_A Proto-oncogene tyrosine-protein kinase receptor RET; hirschsprung disease, extracellular domain, disease mutation, transferase, glycoprotein; HET: NAG SO4; 2.00A {Homo sapiens} Length = 246 Back     alignment and structure
>2x2u_A Proto-oncogene tyrosine-protein kinase receptor RET; hirschsprung disease, extracellular domain, disease mutation, transferase, glycoprotein; HET: NAG SO4; 2.00A {Homo sapiens} Length = 246 Back     alignment and structure
>3qrb_A Cadherin-1; cell adhesion; HET: PGE; 1.80A {Mus musculus} PDB: 1ff5_A 3lng_A 2qvf_B 1edh_A 3lne_A 1q1p_A 3lni_A 3q2l_A* 3q2n_A* 3lnh_A 3lnf_A 2o72_A 1suh_A Length = 213 Back     alignment and structure
>3qrb_A Cadherin-1; cell adhesion; HET: PGE; 1.80A {Mus musculus} PDB: 1ff5_A 3lng_A 2qvf_B 1edh_A 3lne_A 1q1p_A 3lni_A 3q2l_A* 3q2n_A* 3lnh_A 3lnf_A 2o72_A 1suh_A Length = 213 Back     alignment and structure
>3qrb_A Cadherin-1; cell adhesion; HET: PGE; 1.80A {Mus musculus} PDB: 1ff5_A 3lng_A 2qvf_B 1edh_A 3lne_A 1q1p_A 3lni_A 3q2l_A* 3q2n_A* 3lnh_A 3lnf_A 2o72_A 1suh_A Length = 213 Back     alignment and structure
>2qvi_A Cadherin-2; beta barrel, strand SWAP, domain SWAP, calcium, cell adhesion, cleavage on PAIR of basic residues, glycoprotein, membrane; 3.01A {Mus musculus} SCOP: b.1.6.1 b.1.6.1 PDB: 1ncj_A Length = 215 Back     alignment and structure
>2qvi_A Cadherin-2; beta barrel, strand SWAP, domain SWAP, calcium, cell adhesion, cleavage on PAIR of basic residues, glycoprotein, membrane; 3.01A {Mus musculus} SCOP: b.1.6.1 b.1.6.1 PDB: 1ncj_A Length = 215 Back     alignment and structure
>2qvi_A Cadherin-2; beta barrel, strand SWAP, domain SWAP, calcium, cell adhesion, cleavage on PAIR of basic residues, glycoprotein, membrane; 3.01A {Mus musculus} SCOP: b.1.6.1 b.1.6.1 PDB: 1ncj_A Length = 215 Back     alignment and structure
>3ppe_A Vascular endothelial cadherin; extracellular cadherin (EC) domain, beta barrel, IG-domain L domain swapped dimer interface; 2.10A {Gallus gallus} Length = 203 Back     alignment and structure
>3ppe_A Vascular endothelial cadherin; extracellular cadherin (EC) domain, beta barrel, IG-domain L domain swapped dimer interface; 2.10A {Gallus gallus} Length = 203 Back     alignment and structure
>3ppe_A Vascular endothelial cadherin; extracellular cadherin (EC) domain, beta barrel, IG-domain L domain swapped dimer interface; 2.10A {Gallus gallus} Length = 203 Back     alignment and structure
>2yst_A Protocadherin-7; BH-PCDH, beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 119 Back     alignment and structure
>2yst_A Protocadherin-7; BH-PCDH, beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 119 Back     alignment and structure
>2yst_A Protocadherin-7; BH-PCDH, beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 119 Back     alignment and structure
>3lnd_A CDH6 protein, cadherin 6; cell adhesion, cell membrane, membrane, transmembr; 2.82A {Mus musculus} Length = 207 Back     alignment and structure
>3lnd_A CDH6 protein, cadherin 6; cell adhesion, cell membrane, membrane, transmembr; 2.82A {Mus musculus} Length = 207 Back     alignment and structure
>3lnd_A CDH6 protein, cadherin 6; cell adhesion, cell membrane, membrane, transmembr; 2.82A {Mus musculus} Length = 207 Back     alignment and structure
>3k5r_A Cadherin 13; mouse, structural protein; 2.00A {Mus musculus} PDB: 3k5s_A Length = 218 Back     alignment and structure
>3k5r_A Cadherin 13; mouse, structural protein; 2.00A {Mus musculus} PDB: 3k5s_A Length = 218 Back     alignment and structure
>3k5r_A Cadherin 13; mouse, structural protein; 2.00A {Mus musculus} PDB: 3k5s_A Length = 218 Back     alignment and structure
>2ee0_A Protocadherin-9; Ca domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 114 Back     alignment and structure
>2ee0_A Protocadherin-9; Ca domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 114 Back     alignment and structure
>2ee0_A Protocadherin-9; Ca domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 114 Back     alignment and structure
>1ncg_A N-cadherin; cell adhesion protein; 2.10A {Mus musculus} SCOP: b.1.6.1 PDB: 1nch_A 1nci_A Length = 110 Back     alignment and structure
>1ncg_A N-cadherin; cell adhesion protein; 2.10A {Mus musculus} SCOP: b.1.6.1 PDB: 1nch_A 1nci_A Length = 110 Back     alignment and structure
>2yqg_A Desmoglein-2, HDGC; cadherin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 123 Back     alignment and structure
>2yqg_A Desmoglein-2, HDGC; cadherin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 123 Back     alignment and structure
>3k6i_A T-cadherin; cell adhesion, alternative splicing, calcium, cell membrane, cleavage on PAIR of basic residues, glycoprotein, GPI-anchor, lipoprotein; 1.13A {Gallus gallus} Length = 99 Back     alignment and structure
>3k6d_A T-cadherin; cell adhesion; 1.80A {Xenopus laevis} PDB: 2v37_A Length = 99 Back     alignment and structure
>3k6f_A T-cadherin; cell adhesion, calcium, cell membrane, cleavage on PAIR of basic residues, glycoprotein, GPI-anchor, lipoprotein, membrane; 1.81A {Mus musculus} Length = 100 Back     alignment and structure
>2omz_B Epithelial-cadherin; leucine-rich-repeat, nvasion protein, IG-like domain, adhesi protein, cell invasion-cell adhesion complex; 1.60A {Homo sapiens} SCOP: b.1.6.1 PDB: 2omt_B 2omu_B 2omv_B 1o6s_B 2omy_B 2omx_B 3ff8_A 3ff7_A 2omw_B Length = 105 Back     alignment and structure
>1zvn_A Mn-cadherin; strand dimer, ----; 2.16A {Gallus gallus} Length = 99 Back     alignment and structure
>1zxk_A Cadherin-8; strand dimer, cell adhesion; 2.00A {Mus musculus} PDB: 2a4c_A Length = 98 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query653
1q55_A 880 EP-cadherin, C-cadherin; trans interaction, desmos 100.0
3q2w_A559 Cadherin-2; cell adhesion, calcium binding; HET: M 100.0
3q2v_A550 Cadherin-1; cell adhesion, calcium binding; HET: M 100.0
1l3w_A546 EP-cadherin, C-cadherin; cell adhesion, calcium bi 100.0
1q55_A 880 EP-cadherin, C-cadherin; trans interaction, desmos 100.0
3q2w_A559 Cadherin-2; cell adhesion, calcium binding; HET: M 100.0
3q2v_A550 Cadherin-1; cell adhesion, calcium binding; HET: M 100.0
1l3w_A546 EP-cadherin, C-cadherin; cell adhesion, calcium bi 100.0
3ubh_A419 Neural-cadherin; cell adhesion; 2.70A {Drosophila 100.0
3ubh_A419 Neural-cadherin; cell adhesion; 2.70A {Drosophila 100.0
3ubf_A316 Neural-cadherin; cell adhesion; 2.50A {Drosophila 100.0
2a62_A322 Cadherin-8; extracellular domain, homodimer, calci 100.0
2a62_A322 Cadherin-8; extracellular domain, homodimer, calci 100.0
3ubf_A316 Neural-cadherin; cell adhesion; 2.50A {Drosophila 100.0
3mvs_A210 Cadherin-23, otocadherin; adhesion, extracellular 100.0
2x2u_A246 Proto-oncogene tyrosine-protein kinase receptor RE 100.0
2a4e_A215 Cadherin-11; dimer, calcium binding, cell adhesion 100.0
2qvi_A215 Cadherin-2; beta barrel, strand SWAP, domain SWAP, 100.0
3ppe_A203 Vascular endothelial cadherin; extracellular cadhe 100.0
3qrb_A213 Cadherin-1; cell adhesion; HET: PGE; 1.80A {Mus mu 100.0
3mvs_A210 Cadherin-23, otocadherin; adhesion, extracellular 100.0
3k5r_A218 Cadherin 13; mouse, structural protein; 2.00A {Mus 100.0
3lnd_A207 CDH6 protein, cadherin 6; cell adhesion, cell memb 100.0
2x2u_A246 Proto-oncogene tyrosine-protein kinase receptor RE 100.0
2a4e_A215 Cadherin-11; dimer, calcium binding, cell adhesion 99.98
4apx_B242 Protocadherin-15, otocadherin; cell adhesion, hear 99.97
2qvi_A215 Cadherin-2; beta barrel, strand SWAP, domain SWAP, 99.96
3ppe_A203 Vascular endothelial cadherin; extracellular cadhe 99.96
3qrb_A213 Cadherin-1; cell adhesion; HET: PGE; 1.80A {Mus mu 99.96
3k5r_A218 Cadherin 13; mouse, structural protein; 2.00A {Mus 99.95
3lnd_A207 CDH6 protein, cadherin 6; cell adhesion, cell memb 99.95
2yst_A119 Protocadherin-7; BH-PCDH, beta-sandwich, structura 99.94
4apx_B242 Protocadherin-15, otocadherin; cell adhesion, hear 99.92
2ee0_A114 Protocadherin-9; Ca domain, structural genomics, N 99.91
2yst_A119 Protocadherin-7; BH-PCDH, beta-sandwich, structura 99.9
2yqg_A123 Desmoglein-2, HDGC; cadherin, structural genomics, 99.85
2ee0_A114 Protocadherin-9; Ca domain, structural genomics, N 99.85
1ncg_A110 N-cadherin; cell adhesion protein; 2.10A {Mus musc 99.8
2yqg_A123 Desmoglein-2, HDGC; cadherin, structural genomics, 99.79
1wyj_A125 Protocadherin beta 14; SS bond, structural genomic 99.73
1ncg_A110 N-cadherin; cell adhesion protein; 2.10A {Mus musc 99.73
1zvn_A99 Mn-cadherin; strand dimer, ----; 2.16A {Gallus gal 99.71
1zxk_A98 Cadherin-8; strand dimer, cell adhesion; 2.00A {Mu 99.7
1wyj_A125 Protocadherin beta 14; SS bond, structural genomic 99.65
3k6d_A99 T-cadherin; cell adhesion; 1.80A {Xenopus laevis} 99.65
3k6f_A100 T-cadherin; cell adhesion, calcium, cell membrane, 99.63
3k6i_A99 T-cadherin; cell adhesion, alternative splicing, c 99.63
2omz_B105 Epithelial-cadherin; leucine-rich-repeat, nvasion 99.61
1zvn_A99 Mn-cadherin; strand dimer, ----; 2.16A {Gallus gal 99.56
1zxk_A98 Cadherin-8; strand dimer, cell adhesion; 2.00A {Mu 99.55
3k6d_A99 T-cadherin; cell adhesion; 1.80A {Xenopus laevis} 99.49
3k6i_A99 T-cadherin; cell adhesion, alternative splicing, c 99.46
3k6f_A100 T-cadherin; cell adhesion, calcium, cell membrane, 99.45
2omz_B105 Epithelial-cadherin; leucine-rich-repeat, nvasion 99.44
1wuz_A103 Pcdha4 protein, CNR-EC1; cadherin, heteronuclear p 99.41
1wuz_A103 Pcdha4 protein, CNR-EC1; cadherin, heteronuclear p 99.16
3rb5_A298 Na/Ca exchange protein; CBD12, calcium binding and 91.16
3rb5_A298 Na/Ca exchange protein; CBD12, calcium binding and 88.48
3pdd_A190 Glycoside hydrolase, family 9; CBHA, beta-sandwich 86.75
3pdd_A190 Glycoside hydrolase, family 9; CBHA, beta-sandwich 86.01
2yhg_A437 SDE_182CT, cellulose-binding protein; hydrolase, g 84.15
1op4_A159 Neural-cadherin; beta sandwich, cadherin-like doma 81.54
>1q55_A EP-cadherin, C-cadherin; trans interaction, desmosome, junction, adhesion, structural protein; HET: NAG NDG; 30.00A {Mus musculus} SCOP: i.20.1.1 PDB: 1q5a_A* 1q5b_A* 1q5c_A* Back     alignment and structure
Probab=100.00  E-value=1.5e-67  Score=616.05  Aligned_cols=574  Identities=18%  Similarity=0.199  Sum_probs=387.1

Q ss_pred             EEEEEEEeccCCCCcCCCCCceEEec-CCCCCCcEEEEEEEecCCCCCCceEEEEEecCCCCCcceEEEcCCCCCCCCc-
Q psy1887          10 EVVVVVDDVQDTPPIFINIQPVIQLA-PNLTMNDVLTKITAIDGDKGHPRTIKYGLVSEGHPMTVFFTINELTGPKMSP-   87 (653)
Q Consensus        10 ~v~I~V~DvNDn~P~F~~~~~~~~V~-E~~~~g~~i~~v~A~D~D~g~n~~i~ysl~~~~~~~~~~F~Id~~tG~~~~~-   87 (653)
                      ...+.+.|+|||+|+|.+..|.++|+ |++++|+.|++|.|+|.|.  |+.++|++..   +   .|.|++ +|.+... 
T Consensus        22 ~~~~~~~d~ndn~P~F~~~~y~~~v~~e~~~~Gt~V~~v~a~D~D~--n~~i~Y~~~~---~---~F~Id~-~G~i~~~~   92 (880)
T 1q55_A           22 VVPSINADVSGCKPGFSSAEYIFSVNRRELERGRKLGKVNFSDCTT--RKHGLYDVGD---S---RFRVLP-DGTVLVKR   92 (880)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             heeeecccccCCCCccCCCeEEEEechhhCCCCCEEEEEEEEeCCC--CceEEEEeCC---C---CEEECC-CceEEECC
Confidence            35677899999999999999999999 9999999999999999995  8889999842   2   799998 7986322 


Q ss_pred             -------cEEEEE------------EEEeee-------------cCCCceeccccC----------eEEEEeecCCC--C
Q psy1887          88 -------QVFLLV------------LMCYSV-------------VANYPVFDISTQ----------MRSLLIPASVK--L  123 (653)
Q Consensus        88 -------~~~~vv------------i~v~d~-------------Nd~~P~f~~~~~----------~~~~~v~E~~~--~  123 (653)
                             +.+.|.            +.|.++             |+++|.|....+          ...++|+||.+  .
T Consensus        93 ~Ld~e~~~~l~V~A~D~~~~~~~~~v~v~~v~~~~~~~~~~~~~~~~~p~f~~~~~~~~r~~r~~~~~~~~v~En~~~~~  172 (880)
T 1q55_A           93 HVKLHKDTKFTISTWDARGIKHSTNIAVASKRHRSGEEAHSRSSKLPVLTFPETHTGLKRKKRDWVIPPIKVSENERGPF  172 (880)
T ss_dssp             ---------------------------------------------------------------CCCCCCEEEESSCCSSS
T ss_pred             ccccccceEEEEEEEcCCCCeEEEEEEEEEecccccccccccccccCcccccccccccceeeccccccceEEeCCCCCCC
Confidence                   122211            122223             344678876532          01589999998  6


Q ss_pred             ceEEEEEEEecCCCCcceEEEecCC-----CceEEEEeeccCCCCCCeeEEEEEEcccc--CCCceEEEEEEEEECCCCC
Q psy1887         124 GTIIYRLRASDSDKDYPLTFDATDF-----GSYVVKIKSLPCSKNSSFCEANVYLDRVL--VPGQVFQFRIIVKDTRGDT  196 (653)
Q Consensus       124 gt~i~~v~a~D~D~~~~~~y~i~~~-----~~~~f~i~~~~~~~~~~~~~g~i~l~~~l--e~~~~~~~~v~v~d~~g~~  196 (653)
                      +..|+++.+ |.|.+..++|+|...     ....|.|+..         +|.|++.++|  |....|.+.|+|.|.+|..
T Consensus       173 ~~~v~~v~~-d~d~~~~v~Ysi~~~~~~~~~~~~F~Id~~---------tG~l~~~~~LDrE~~~~y~l~v~A~D~g~~~  242 (880)
T 1q55_A          173 PKRLVQIKS-NKDRFNKVYYSITGQGADNPPQGVFRIEWE---------TGWMLVTRPLDREEYDKYVLSSHAVSENGSP  242 (880)
T ss_dssp             CEEEEECCC-SGGGSSCEEEEEEEBTTTBSSTTSEEECTT---------TCEEEECSCCCTTTCCEEEEEEEEEESSSCB
T ss_pred             CeEEEEEee-CCCCCceEEEEEECCCCCCCcCCEEEEECC---------cCEEEECCccCccccCccEEEEEEEECCCCc
Confidence            778888875 667677999999332     2357999863         6899999999  4567899999999987764


Q ss_pred             --eeeeEEEEEEecCCCCCCCCCCCCeEEEEeCCC--cEEEE-eecCC---C-----CcceEEEEE--------------
Q psy1887         197 --TTVPTSLTATDAALNINAQFPHIPGVIVVPEVL--GTYLL-WRHLS---G-----PKNMYLMRE--------------  249 (653)
Q Consensus       197 --~~~~~~i~v~~~~~~~~p~~~~~~~~~~i~e~~--G~i~~-~~~lD---e-----~~~~y~l~~--------------  249 (653)
                        ....+.|+|.+.| |++|.|....+.+.|+|++  |.... ..+.|   +     ..-.|+|..              
T Consensus       243 ~~~~~~v~I~V~DvN-Dn~P~F~~~~y~~~V~En~~~Gt~V~~v~AtD~D~g~~~~N~~v~Ysi~~~~~~~~~~~~F~Id  321 (880)
T 1q55_A          243 VEEPMEITINVIDQN-DNRPKFTQDVFRGSVREGVQPGTQVMAVSATDEDDNIDSLNGVLSYSILKQDPEEPIPNLFTIN  321 (880)
T ss_dssp             CSCCEEEEEEEECCS-CCCCEESSSCEEEEEETTCCSSEEEEECCEECCSCCSSSSTTCCEEEEEEESSCCSCSCSEEEC
T ss_pred             eeeeEEEEEEEEecC-CCCCCccCCcEEEEEeCCCCCCceeEEEEEEcCCCCCCCcCcEEEEEEcCCCCCcccCCeEEEc
Confidence              4466778888887 7899999999999999997  65443 34444   3     123566642              


Q ss_pred             -----EEe-eCCccccceecCCCcEEEEEEEEEecccCCCCCCCeEEEEEEEEEEccCCCCCeecCCceEEEEeCCCCCC
Q psy1887         250 -----IRL-SKPYRELHTVASGQPVILMVLAEEERKDLNEPSPQSSTATIALVFDQAINTPPYFDTVQYITHLDENSPQG  323 (653)
Q Consensus       250 -----~~~-~~~ld~~~~~~~~~~~~l~V~A~d~~~d~~~~~~~s~~~~v~i~V~dvNd~~P~f~~~~~~~~v~En~~~g  323 (653)
                           +.+ .++||+|.    ...|.|+|+|+|.    | .+++++++.|+|.|.|+|||+|.|....|.++|+|| ++|
T Consensus       322 ~~tG~I~~~~~~LDrE~----~~~y~l~V~A~D~----g-~~~~s~~~~v~I~V~DvNDn~P~F~~~~y~~~V~En-~~g  391 (880)
T 1q55_A          322 RETGVISLIGTGLDREK----FPEYTLTVQATDL----E-GAGLSVEGKAIIQITDANDNAPIFDPKTYTALVPEN-EIG  391 (880)
T ss_dssp             TTTCEEEECSCCCCTTT----CCEEEEEEEEEHH----H-HTSCEEECCEEEEEECCCCCCCCBSCSEEEEEEESS-SCC
T ss_pred             cCCccEEEecccCCHHH----cceeEEEEEEEEC----C-CCCccceeEEEEEEEeccCCCCCccccceEEEeecC-CCC
Confidence                 334 36788875    6789999999873    2 357899999999999999999999999999999999 999


Q ss_pred             cEEEeeeceeeEEeeCC--CCcceEEEEEEe-cCCCcEEEc--c--cceeeeeeEEEEEecCCCCCccCCCeEEEEEEEE
Q psy1887         324 TALIFAESFHTQVTDDN--MGKNGIFSLTLE-NNNGTFEIW--P--SVVERKAQFTIRVRNNKNLDYERTRTLSFVIVAK  396 (653)
Q Consensus       324 t~v~~v~~~~~~a~D~D--~g~n~~~~~~~~-~~~~~F~I~--~--~tg~~~~~~~i~l~~~~~LD~E~~~~~~l~V~a~  396 (653)
                      +.|++     +.|+|+|  .|.|+.++|++. +..+.|.|+  +  .+|.        |++.++||||+...|.|+|+|+
T Consensus       392 t~V~~-----v~A~D~D~~~g~n~~v~Ysi~~~~~~~F~I~~d~~~~~G~--------i~~~~~LD~E~~~~y~l~V~A~  458 (880)
T 1q55_A          392 FEVQR-----LSVTDLDMPGTPAWQAVYKIRVNEGGFFNITTDPESNQGI--------LTTAKGLDFELRKQYVLQITVE  458 (880)
T ss_dssp             CEEEE-----ECBCCCSCTTSTTSCEECCBSCCTTSCEEEEECTTTCCEE--------EEESSCCCCSSCCCEEEEECCE
T ss_pred             cEEEE-----EEEECCCCCCCCCceEEEEEecCCCceEEEEecCCCceEE--------EecccCCCcccCCcEEEEEEEE
Confidence            99998     4999999  778888888885 456799995  3  4565        7789999999999999999999


Q ss_pred             ECCCCCCCCCceEEEEEEEEEeecCCCCCeecccceEEEeeCCCCCCcEEEEEEEeeCCCCCCceEEEEEEcCCCCcceE
Q psy1887         397 EISSDSSSNLLSSQAPVLVYINDVNDNPPVFTATLYTAKIPENATAGEKVVQVKATDVDTNLGGEILYTAILGYKNSSLE  476 (653)
Q Consensus       397 D~~~~~~~~~~s~~~~v~I~V~DvNDn~P~f~~~~y~~~V~E~~~~gt~v~~v~a~D~D~g~n~~i~y~i~~~~~~~~F~  476 (653)
                      |.+..+ .+.++++++|+|+|.|+|| +|.|.+..|.+.|+|++++|+.|+++.|+|+|.|.|++++|+|..+ ..++|.
T Consensus       459 D~~~~~-~~~~sst~tV~I~V~DvND-~P~f~~~~y~~~V~En~~~Gt~V~~v~A~D~D~g~n~~v~Ysi~~~-~~~~F~  535 (880)
T 1q55_A          459 NAEPFS-VPLPTSTATVTVTVEDVNE-APFFVPAVSRVDVSEDLSRGEKIISLVAQDPDKQQIQKLSYFIGND-PARWLT  535 (880)
T ss_dssp             ESSCCS-SCCCCCCEEEEEEEECCCC-CCEESSCEECCCBCTTCCSSEEEEECCEECCCTTCCCCEEEEECCC-SSCCCE
T ss_pred             ECCCCC-CCCcceeEEEEEEEEeCCC-CCEEecCceEEEEeCCCCCCCEEEEEEEEeCCCCCCCcEEEEECCC-CCCCEE
Confidence            987321 2458899999999999999 9999999999999999999999999999999999999999998654 567999


Q ss_pred             EeCCCCeEEEEcCccCCccCc----cEEEEEEEEEECCCCCceEEEEEEEEEEecCCCCCeEeecCcEEEEecCCCCCeE
Q psy1887         477 LDAHTGDITIANGQQFDREEA----SEYKFQVEARDMQGLGLRTVVPLQLTILDVNDNAPIFVQTPFEFVLASDSRNFSE  552 (653)
Q Consensus       477 Id~~tG~i~~~~~~~lD~E~~----~~~~l~V~a~D~g~~~~~~~~~v~I~V~DvNDn~P~f~~~~y~~~v~e~~~~g~~  552 (653)
                      |++.+|.|++.  +.||||..    ..|.|+|.|+|.|.|+++++++|+|+|.|+|||+|+|.+.  .+.|+|+.++|+ 
T Consensus       536 Id~~tG~I~~~--~~LDrE~~~~~~~~y~l~V~A~D~g~p~~sst~tv~I~V~DvNDn~P~f~~~--~~~v~E~~~~g~-  610 (880)
T 1q55_A          536 VNKDNGIVTGN--GNLDRESEYVKNNTYTVIMLVTDDGVSVGTGTGTLILHVLDVNDNGPVPSPR--VFTMCDQNPEPQ-  610 (880)
T ss_dssp             EETTTTEEEEC--SCCCTTSSSCCSSCCEEEEEEEECSSSCCCCCEEEECCBCCCCCSCCCBSCC--CEEECSSSCCCE-
T ss_pred             EeCCccEEEEC--CccCcccccCCCCEEEEEEEEEECCCCCcEeEEEEEEEEEeCCCCCCCccCc--ceEEecCCCCCe-
Confidence            99999999998  89999997    8999999999999999999999999999999999999854  688999999997 


Q ss_pred             EEEEEEEeCCCCCCCCe-EEEEEEeCCCCCcEEEEcCCCccceeeEEEEEEeCC-CCCccceEEEecCCccchhccchhh
Q psy1887         553 RTFIKATDQDAEAPNNI-VRYEIISGNYDNKFSLHPETGVPHKWSTTQVRIYPP-DSAVRNIKFLVPHSQAQLERKQLED  630 (653)
Q Consensus       553 v~~v~A~D~D~~~~n~~-i~Y~i~~~~~~~~F~Id~~tG~p~~~~~~~v~i~~~-~~~~~~~~~~v~~~~~~~~~~~~~~  630 (653)
                      +  |.|+|+|.+ .|+. ++|+|..++ .+.|.| ..+|.-     +.+..... ......+.+.|-......       
T Consensus       611 v--v~A~D~D~~-~n~~~~~ysl~~~~-~~~f~i-~~~g~~-----~~l~~~~~d~~~~~~y~l~V~a~D~g~-------  673 (880)
T 1q55_A          611 V--LTISDADIP-PNTYPYKVSLSHGS-DLTWKA-ELDSKG-----TSMLLSPTQQLKKGDYSIYVLLSDAQN-------  673 (880)
T ss_dssp             E--EEBCCSSCT-TTTCCCCCBCCSCS-SSSCBC-CBCTTS-----SEEEEBCSSCCCSSCBCCEEECCSSSC-------
T ss_pred             E--EEEecCCCC-CCCceEEEEECCCC-CCCeEE-Ecccce-----eEEEeccCccccCCEEEEEEEEEECCc-------
Confidence            3  999999987 6775 899997654 457888 555531     23333332 223344555553331111       


Q ss_pred             eeeeecCcEEEEEecCCCCCCC
Q psy1887         631 ILSEMSGGRVSVVNTRPHYEDY  652 (653)
Q Consensus       631 ~l~~~~~~~v~~~d~~~~~~~~  652 (653)
                       +.+....+|+|.|.+|+.|.+
T Consensus       674 -lsst~tv~V~V~d~nd~~~~~  694 (880)
T 1q55_A          674 -NPQLTVVNATVCSCEGKAIKC  694 (880)
T ss_dssp             -CCEEEECCEEECSCSSSCCCC
T ss_pred             -ceeeEEEEEEEEecCCCcccc
Confidence             455556789999999987765
>3q2w_A Cadherin-2; cell adhesion, calcium binding; HET: MAN NAG; 3.20A {Mus musculus} Back     alignment and structure
>3q2v_A Cadherin-1; cell adhesion, calcium binding; HET: MAN; 3.40A {Mus musculus} Back     alignment and structure
>1l3w_A EP-cadherin, C-cadherin; cell adhesion, calcium binding, extracellular, ECT metal binding protein; HET: NAG NDG; 3.08A {Xenopus laevis} SCOP: b.1.6.1 b.1.6.1 b.1.6.1 b.1.6.1 b.1.6.1 Back     alignment and structure
>1q55_A EP-cadherin, C-cadherin; trans interaction, desmosome, junction, adhesion, structural protein; HET: NAG NDG; 30.00A {Mus musculus} SCOP: i.20.1.1 PDB: 1q5a_A* 1q5b_A* 1q5c_A* Back     alignment and structure
>3q2w_A Cadherin-2; cell adhesion, calcium binding; HET: MAN NAG; 3.20A {Mus musculus} Back     alignment and structure
>3q2v_A Cadherin-1; cell adhesion, calcium binding; HET: MAN; 3.40A {Mus musculus} Back     alignment and structure
>1l3w_A EP-cadherin, C-cadherin; cell adhesion, calcium binding, extracellular, ECT metal binding protein; HET: NAG NDG; 3.08A {Xenopus laevis} SCOP: b.1.6.1 b.1.6.1 b.1.6.1 b.1.6.1 b.1.6.1 Back     alignment and structure
>3ubh_A Neural-cadherin; cell adhesion; 2.70A {Drosophila melanogaster} Back     alignment and structure
>3ubh_A Neural-cadherin; cell adhesion; 2.70A {Drosophila melanogaster} Back     alignment and structure
>3ubf_A Neural-cadherin; cell adhesion; 2.50A {Drosophila melanogaster} PDB: 3ubg_A Back     alignment and structure
>2a62_A Cadherin-8; extracellular domain, homodimer, calcium binding, adhesion; 4.50A {Mus musculus} Back     alignment and structure
>2a62_A Cadherin-8; extracellular domain, homodimer, calcium binding, adhesion; 4.50A {Mus musculus} Back     alignment and structure
>3ubf_A Neural-cadherin; cell adhesion; 2.50A {Drosophila melanogaster} PDB: 3ubg_A Back     alignment and structure
>3mvs_A Cadherin-23, otocadherin; adhesion, extracellular domain, cell adhesion; 1.10A {Mus musculus} PDB: 4apx_A* 2whv_A 2wcp_A* 4aq8_A 4axw_A* 4aqe_A* 4aqa_A* 2wd0_A* 2wbx_A Back     alignment and structure
>2x2u_A Proto-oncogene tyrosine-protein kinase receptor RET; hirschsprung disease, extracellular domain, disease mutation, transferase, glycoprotein; HET: NAG SO4; 2.00A {Homo sapiens} Back     alignment and structure
>2a4e_A Cadherin-11; dimer, calcium binding, cell adhesion; 3.20A {Mus musculus} Back     alignment and structure
>2qvi_A Cadherin-2; beta barrel, strand SWAP, domain SWAP, calcium, cell adhesion, cleavage on PAIR of basic residues, glycoprotein, membrane; 3.01A {Mus musculus} SCOP: b.1.6.1 b.1.6.1 PDB: 1ncj_A Back     alignment and structure
>3ppe_A Vascular endothelial cadherin; extracellular cadherin (EC) domain, beta barrel, IG-domain L domain swapped dimer interface; 2.10A {Gallus gallus} Back     alignment and structure
>3qrb_A Cadherin-1; cell adhesion; HET: PGE; 1.80A {Mus musculus} PDB: 1ff5_A 3lng_A 2qvf_B 1edh_A 3lne_A 1q1p_A 3lni_A 3q2l_A* 3q2n_A* 3lnh_A 3lnf_A 2o72_A 1suh_A Back     alignment and structure
>3mvs_A Cadherin-23, otocadherin; adhesion, extracellular domain, cell adhesion; 1.10A {Mus musculus} PDB: 4apx_A* 2whv_A 2wcp_A* 4aq8_A 4axw_A* 4aqe_A* 4aqa_A* 2wd0_A* 2wbx_A Back     alignment and structure
>3k5r_A Cadherin 13; mouse, structural protein; 2.00A {Mus musculus} PDB: 3k5s_A Back     alignment and structure
>3lnd_A CDH6 protein, cadherin 6; cell adhesion, cell membrane, membrane, transmembr; 2.82A {Mus musculus} Back     alignment and structure
>2x2u_A Proto-oncogene tyrosine-protein kinase receptor RET; hirschsprung disease, extracellular domain, disease mutation, transferase, glycoprotein; HET: NAG SO4; 2.00A {Homo sapiens} Back     alignment and structure
>2a4e_A Cadherin-11; dimer, calcium binding, cell adhesion; 3.20A {Mus musculus} Back     alignment and structure
>4apx_B Protocadherin-15, otocadherin; cell adhesion, hearing, deafness, CDH23, PCDH15; HET: MES; 1.65A {Mus musculus} PDB: 4aq8_C 4aqa_B* 4aqe_B* 4axw_B* Back     alignment and structure
>2qvi_A Cadherin-2; beta barrel, strand SWAP, domain SWAP, calcium, cell adhesion, cleavage on PAIR of basic residues, glycoprotein, membrane; 3.01A {Mus musculus} SCOP: b.1.6.1 b.1.6.1 PDB: 1ncj_A Back     alignment and structure
>3ppe_A Vascular endothelial cadherin; extracellular cadherin (EC) domain, beta barrel, IG-domain L domain swapped dimer interface; 2.10A {Gallus gallus} Back     alignment and structure
>3qrb_A Cadherin-1; cell adhesion; HET: PGE; 1.80A {Mus musculus} PDB: 1ff5_A 3lng_A 2qvf_B 1edh_A 3lne_A 1q1p_A 3lni_A 3q2l_A* 3q2n_A* 3lnh_A 3lnf_A 2o72_A 1suh_A Back     alignment and structure
>3k5r_A Cadherin 13; mouse, structural protein; 2.00A {Mus musculus} PDB: 3k5s_A Back     alignment and structure
>3lnd_A CDH6 protein, cadherin 6; cell adhesion, cell membrane, membrane, transmembr; 2.82A {Mus musculus} Back     alignment and structure
>2yst_A Protocadherin-7; BH-PCDH, beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>4apx_B Protocadherin-15, otocadherin; cell adhesion, hearing, deafness, CDH23, PCDH15; HET: MES; 1.65A {Mus musculus} PDB: 4aq8_C 4aqa_B* 4aqe_B* 4axw_B* Back     alignment and structure
>2ee0_A Protocadherin-9; Ca domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>2yst_A Protocadherin-7; BH-PCDH, beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>2yqg_A Desmoglein-2, HDGC; cadherin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>2ee0_A Protocadherin-9; Ca domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>1ncg_A N-cadherin; cell adhesion protein; 2.10A {Mus musculus} SCOP: b.1.6.1 PDB: 1nch_A 1nci_A Back     alignment and structure
>2yqg_A Desmoglein-2, HDGC; cadherin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>1wyj_A Protocadherin beta 14; SS bond, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Mus musculus} Back     alignment and structure
>1ncg_A N-cadherin; cell adhesion protein; 2.10A {Mus musculus} SCOP: b.1.6.1 PDB: 1nch_A 1nci_A Back     alignment and structure
>1zvn_A Mn-cadherin; strand dimer, ----; 2.16A {Gallus gallus} Back     alignment and structure
>1zxk_A Cadherin-8; strand dimer, cell adhesion; 2.00A {Mus musculus} PDB: 2a4c_A Back     alignment and structure
>1wyj_A Protocadherin beta 14; SS bond, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Mus musculus} Back     alignment and structure
>3k6d_A T-cadherin; cell adhesion; 1.80A {Xenopus laevis} PDB: 2v37_A Back     alignment and structure
>3k6f_A T-cadherin; cell adhesion, calcium, cell membrane, cleavage on PAIR of basic residues, glycoprotein, GPI-anchor, lipoprotein, membrane; 1.81A {Mus musculus} Back     alignment and structure
>3k6i_A T-cadherin; cell adhesion, alternative splicing, calcium, cell membrane, cleavage on PAIR of basic residues, glycoprotein, GPI-anchor, lipoprotein; 1.13A {Gallus gallus} Back     alignment and structure
>2omz_B Epithelial-cadherin; leucine-rich-repeat, nvasion protein, IG-like domain, adhesi protein, cell invasion-cell adhesion complex; 1.60A {Homo sapiens} SCOP: b.1.6.1 PDB: 2omt_B 2omu_B 2omv_B 1o6s_B 2omy_B 2omx_B 3ff8_A 3ff7_A 2omw_B Back     alignment and structure
>1zvn_A Mn-cadherin; strand dimer, ----; 2.16A {Gallus gallus} Back     alignment and structure
>1zxk_A Cadherin-8; strand dimer, cell adhesion; 2.00A {Mus musculus} PDB: 2a4c_A Back     alignment and structure
>3k6d_A T-cadherin; cell adhesion; 1.80A {Xenopus laevis} PDB: 2v37_A Back     alignment and structure
>3k6i_A T-cadherin; cell adhesion, alternative splicing, calcium, cell membrane, cleavage on PAIR of basic residues, glycoprotein, GPI-anchor, lipoprotein; 1.13A {Gallus gallus} Back     alignment and structure
>3k6f_A T-cadherin; cell adhesion, calcium, cell membrane, cleavage on PAIR of basic residues, glycoprotein, GPI-anchor, lipoprotein, membrane; 1.81A {Mus musculus} Back     alignment and structure
>2omz_B Epithelial-cadherin; leucine-rich-repeat, nvasion protein, IG-like domain, adhesi protein, cell invasion-cell adhesion complex; 1.60A {Homo sapiens} SCOP: b.1.6.1 PDB: 2omt_B 2omu_B 2omv_B 1o6s_B 2omy_B 2omx_B 3ff8_A 3ff7_A 2omw_B Back     alignment and structure
>1wuz_A Pcdha4 protein, CNR-EC1; cadherin, heteronuclear protocadherin, cell adhesion; NMR {Mus musculus} Back     alignment and structure
>1wuz_A Pcdha4 protein, CNR-EC1; cadherin, heteronuclear protocadherin, cell adhesion; NMR {Mus musculus} Back     alignment and structure
>3rb5_A Na/Ca exchange protein; CBD12, calcium binding and regulation, metal binding protein; 2.35A {Drosophila melanogaster} PDB: 3rb7_A 3e9u_A Back     alignment and structure
>3rb5_A Na/Ca exchange protein; CBD12, calcium binding and regulation, metal binding protein; 2.35A {Drosophila melanogaster} PDB: 3rb7_A 3e9u_A Back     alignment and structure
>3pdd_A Glycoside hydrolase, family 9; CBHA, beta-sandwich, cellulosome, unknown function; 1.72A {Clostridium thermocellum} PDB: 3pdg_A Back     alignment and structure
>3pdd_A Glycoside hydrolase, family 9; CBHA, beta-sandwich, cellulosome, unknown function; 1.72A {Clostridium thermocellum} PDB: 3pdg_A Back     alignment and structure
>2yhg_A SDE_182CT, cellulose-binding protein; hydrolase, glycoside hydrolase; HET: BTB; 1.08A {Saccharophagus degradans} Back     alignment and structure
>1op4_A Neural-cadherin; beta sandwich, cadherin-like domain, cell adhesion; NMR {Mus musculus} SCOP: b.1.6.1 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 653
d1l3wa2113 b.1.6.1 (A:101-213) C-cadherin ectodomain {African 3e-13
d1l3wa2113 b.1.6.1 (A:101-213) C-cadherin ectodomain {African 8e-06
d1l3wa3113 b.1.6.1 (A:214-326) C-cadherin ectodomain {African 3e-13
d1l3wa3113 b.1.6.1 (A:214-326) C-cadherin ectodomain {African 0.002
d1l3wa3113 b.1.6.1 (A:214-326) C-cadherin ectodomain {African 0.002
d1ncja2114 b.1.6.1 (A:102-215) N-cadherin (neural) {Mouse (Mu 2e-11
d1ncja2114 b.1.6.1 (A:102-215) N-cadherin (neural) {Mouse (Mu 3e-04
d1l3wa4107 b.1.6.1 (A:327-433) C-cadherin ectodomain {African 8e-11
d1l3wa4107 b.1.6.1 (A:327-433) C-cadherin ectodomain {African 7e-07
d1op4a_136 b.1.6.1 (A:) N-cadherin (neural) {Mouse (Mus muscu 2e-10
d1edha2112 b.1.6.1 (A:102-213) E-cadherin (epithelial) {Mouse 3e-10
d1edha2112 b.1.6.1 (A:102-213) E-cadherin (epithelial) {Mouse 2e-05
d1edha2112 b.1.6.1 (A:102-213) E-cadherin (epithelial) {Mouse 0.001
d1l3wa5107 b.1.6.1 (A:434-540) C-cadherin ectodomain {African 8e-10
d1l3wa1100 b.1.6.1 (A:1-100) C-cadherin ectodomain {African c 8e-07
d2omzb1104 b.1.6.1 (B:-2-101) E-cadherin (epithelial) {Human 2e-06
d1ncia_102 b.1.6.1 (A:) N-cadherin (neural) {Mouse (Mus muscu 4e-06
>d1l3wa2 b.1.6.1 (A:101-213) C-cadherin ectodomain {African clawed frog (Xenopus laevis) [TaxId: 8355]} Length = 113 Back     information, alignment and structure

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: C-cadherin ectodomain
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

 Score = 64.3 bits (155), Expect = 3e-13
 Identities = 33/112 (29%), Positives = 48/112 (42%), Gaps = 6/112 (5%)

Query: 421 NDNPPVFTATLYTAKIPENATAGEKVVQVKATDVDTNLGGE--ILYTAILGYKNSSLELD 478
           NDN P FT  ++   + E    G +V+ V ATD D N+     +L  +IL         +
Sbjct: 2   NDNRPKFTQDVFRGSVREGVQPGTQVMAVSATDEDDNIDSLNGVLSYSILKQDPEEPIPN 61

Query: 479 AHTGDITIAN----GQQFDREEASEYKFQVEARDMQGLGLRTVVPLQLTILD 526
             T +         G   DRE+  EY   V+A D++G GL       + I D
Sbjct: 62  LFTINRETGVISLIGTGLDREKFPEYTLTVQATDLEGAGLSVEGKAIIQITD 113
>d1l3wa2 b.1.6.1 (A:101-213) C-cadherin ectodomain {African clawed frog (Xenopus laevis) [TaxId: 8355]} Length = 113 Back     information, alignment and structure
>d1l3wa3 b.1.6.1 (A:214-326) C-cadherin ectodomain {African clawed frog (Xenopus laevis) [TaxId: 8355]} Length = 113 Back     information, alignment and structure
>d1l3wa3 b.1.6.1 (A:214-326) C-cadherin ectodomain {African clawed frog (Xenopus laevis) [TaxId: 8355]} Length = 113 Back     information, alignment and structure
>d1l3wa3 b.1.6.1 (A:214-326) C-cadherin ectodomain {African clawed frog (Xenopus laevis) [TaxId: 8355]} Length = 113 Back     information, alignment and structure
>d1ncja2 b.1.6.1 (A:102-215) N-cadherin (neural) {Mouse (Mus musculus) [TaxId: 10090]} Length = 114 Back     information, alignment and structure
>d1ncja2 b.1.6.1 (A:102-215) N-cadherin (neural) {Mouse (Mus musculus) [TaxId: 10090]} Length = 114 Back     information, alignment and structure
>d1l3wa4 b.1.6.1 (A:327-433) C-cadherin ectodomain {African clawed frog (Xenopus laevis) [TaxId: 8355]} Length = 107 Back     information, alignment and structure
>d1l3wa4 b.1.6.1 (A:327-433) C-cadherin ectodomain {African clawed frog (Xenopus laevis) [TaxId: 8355]} Length = 107 Back     information, alignment and structure
>d1op4a_ b.1.6.1 (A:) N-cadherin (neural) {Mouse (Mus musculus) [TaxId: 10090]} Length = 136 Back     information, alignment and structure
>d1edha2 b.1.6.1 (A:102-213) E-cadherin (epithelial) {Mouse (Mus musculus) [TaxId: 10090]} Length = 112 Back     information, alignment and structure
>d1edha2 b.1.6.1 (A:102-213) E-cadherin (epithelial) {Mouse (Mus musculus) [TaxId: 10090]} Length = 112 Back     information, alignment and structure
>d1edha2 b.1.6.1 (A:102-213) E-cadherin (epithelial) {Mouse (Mus musculus) [TaxId: 10090]} Length = 112 Back     information, alignment and structure
>d1l3wa5 b.1.6.1 (A:434-540) C-cadherin ectodomain {African clawed frog (Xenopus laevis) [TaxId: 8355]} Length = 107 Back     information, alignment and structure
>d1l3wa1 b.1.6.1 (A:1-100) C-cadherin ectodomain {African clawed frog (Xenopus laevis) [TaxId: 8355]} Length = 100 Back     information, alignment and structure
>d2omzb1 b.1.6.1 (B:-2-101) E-cadherin (epithelial) {Human (Homo sapiens) [TaxId: 9606]} Length = 104 Back     information, alignment and structure
>d1ncia_ b.1.6.1 (A:) N-cadherin (neural) {Mouse (Mus musculus) [TaxId: 10090]} Length = 102 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query653
d1edha2112 E-cadherin (epithelial) {Mouse (Mus musculus) [Tax 99.81
d1l3wa2113 C-cadherin ectodomain {African clawed frog (Xenopu 99.81
d1l3wa4107 C-cadherin ectodomain {African clawed frog (Xenopu 99.77
d1ncja2114 N-cadherin (neural) {Mouse (Mus musculus) [TaxId: 99.75
d1op4a_136 N-cadherin (neural) {Mouse (Mus musculus) [TaxId: 99.71
d1l3wa2113 C-cadherin ectodomain {African clawed frog (Xenopu 99.7
d1edha2112 E-cadherin (epithelial) {Mouse (Mus musculus) [Tax 99.7
d1l3wa4107 C-cadherin ectodomain {African clawed frog (Xenopu 99.67
d1l3wa3113 C-cadherin ectodomain {African clawed frog (Xenopu 99.66
d1ncja2114 N-cadherin (neural) {Mouse (Mus musculus) [TaxId: 99.65
d1op4a_136 N-cadherin (neural) {Mouse (Mus musculus) [TaxId: 99.64
d1l3wa5107 C-cadherin ectodomain {African clawed frog (Xenopu 99.59
d1l3wa3113 C-cadherin ectodomain {African clawed frog (Xenopu 99.57
d1ncia_102 N-cadherin (neural) {Mouse (Mus musculus) [TaxId: 99.47
d2omzb1104 E-cadherin (epithelial) {Human (Homo sapiens) [Tax 99.47
d1l3wa1100 C-cadherin ectodomain {African clawed frog (Xenopu 99.47
d1l3wa5107 C-cadherin ectodomain {African clawed frog (Xenopu 99.45
d1ncia_102 N-cadherin (neural) {Mouse (Mus musculus) [TaxId: 99.27
d2omzb1104 E-cadherin (epithelial) {Human (Homo sapiens) [Tax 99.26
d1l3wa1100 C-cadherin ectodomain {African clawed frog (Xenopu 99.26
d1u2ca1103 Dystroglycan, N-terminal domain {Mouse (Mus muscul 89.29
>d1edha2 b.1.6.1 (A:102-213) E-cadherin (epithelial) {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: E-cadherin (epithelial)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.81  E-value=7.9e-20  Score=157.64  Aligned_cols=105  Identities=33%  Similarity=0.539  Sum_probs=95.7

Q ss_pred             CCCCCeecccceEEEeeCCCCCCcEEEEEEEeeCCCC---CCceEEEEEEcCCC----CcceEEeCCCCeEEEEcCccCC
Q psy1887         421 NDNPPVFTATLYTAKIPENATAGEKVVQVKATDVDTN---LGGEILYTAILGYK----NSSLELDAHTGDITIANGQQFD  493 (653)
Q Consensus       421 NDn~P~f~~~~y~~~V~E~~~~gt~v~~v~a~D~D~g---~n~~i~y~i~~~~~----~~~F~Id~~tG~i~~~~~~~lD  493 (653)
                      |||+|+|.+..|.+.|+|++++|+.|+++.|+|+|.|   .|++++|+|..+..    ..+|.|++.+|.|++.. +.||
T Consensus         1 NDn~P~F~~~~y~~~V~E~~~~gt~v~~v~A~D~D~g~~~~n~~v~y~i~~~~~~~~~~~~F~i~~~tG~i~~~~-~~lD   79 (112)
T d1edha2           1 NDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVNRDTGVISVLT-SGLD   79 (112)
T ss_dssp             SCCCCEESCSEEEEEEETTCCTTCEEEECCEECCSCTTTCSTTCCEEEEEEEESCCSCSCSEEECTTTCEEEECS-SCCC
T ss_pred             CCCCCccCCCEEEEEEECCCCCCCEEEEEEEEecccCCccccceEEEEEecCCccccceeEEEEecccceEEEEe-cccc
Confidence            8999999999999999999999999999999999975   46789999987543    35799999999998752 5799


Q ss_pred             ccCccEEEEEEEEEECCCCCceEEEEEEEEEEe
Q psy1887         494 REEASEYKFQVEARDMQGLGLRTVVPLQLTILD  526 (653)
Q Consensus       494 ~E~~~~~~l~V~a~D~g~~~~~~~~~v~I~V~D  526 (653)
                      ||....|.|+|+|+|.|.|+++++++|+|.|+|
T Consensus        80 ~E~~~~y~l~V~a~D~g~~~~~~~~~v~I~V~D  112 (112)
T d1edha2          80 RESYPTYTLVVQAADLQGEGLSTTAKAVITVKD  112 (112)
T ss_dssp             TTTCCEEEEEEEEETGGGTSCEEEEEEEEEEEC
T ss_pred             cccCcEEEEEEEEEECCCCccEEEEEEEEEEEC
Confidence            999999999999999999999999999999987
>d1l3wa2 b.1.6.1 (A:101-213) C-cadherin ectodomain {African clawed frog (Xenopus laevis) [TaxId: 8355]} Back     information, alignment and structure
>d1l3wa4 b.1.6.1 (A:327-433) C-cadherin ectodomain {African clawed frog (Xenopus laevis) [TaxId: 8355]} Back     information, alignment and structure
>d1ncja2 b.1.6.1 (A:102-215) N-cadherin (neural) {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1op4a_ b.1.6.1 (A:) N-cadherin (neural) {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1l3wa2 b.1.6.1 (A:101-213) C-cadherin ectodomain {African clawed frog (Xenopus laevis) [TaxId: 8355]} Back     information, alignment and structure
>d1edha2 b.1.6.1 (A:102-213) E-cadherin (epithelial) {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1l3wa4 b.1.6.1 (A:327-433) C-cadherin ectodomain {African clawed frog (Xenopus laevis) [TaxId: 8355]} Back     information, alignment and structure
>d1l3wa3 b.1.6.1 (A:214-326) C-cadherin ectodomain {African clawed frog (Xenopus laevis) [TaxId: 8355]} Back     information, alignment and structure
>d1ncja2 b.1.6.1 (A:102-215) N-cadherin (neural) {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1op4a_ b.1.6.1 (A:) N-cadherin (neural) {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1l3wa5 b.1.6.1 (A:434-540) C-cadherin ectodomain {African clawed frog (Xenopus laevis) [TaxId: 8355]} Back     information, alignment and structure
>d1l3wa3 b.1.6.1 (A:214-326) C-cadherin ectodomain {African clawed frog (Xenopus laevis) [TaxId: 8355]} Back     information, alignment and structure
>d1ncia_ b.1.6.1 (A:) N-cadherin (neural) {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1l3wa1 b.1.6.1 (A:1-100) C-cadherin ectodomain {African clawed frog (Xenopus laevis) [TaxId: 8355]} Back     information, alignment and structure
>d1l3wa5 b.1.6.1 (A:434-540) C-cadherin ectodomain {African clawed frog (Xenopus laevis) [TaxId: 8355]} Back     information, alignment and structure
>d1ncia_ b.1.6.1 (A:) N-cadherin (neural) {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1l3wa1 b.1.6.1 (A:1-100) C-cadherin ectodomain {African clawed frog (Xenopus laevis) [TaxId: 8355]} Back     information, alignment and structure
>d1u2ca1 b.1.6.2 (A:58-160) Dystroglycan, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure