Psyllid ID: psy1890

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240--
MTEGVDGFRDHDGVKNLAKTPAKLWKDGLIYYEIDKNFSVDRKRFIVKALNNIMTFSCVRFRRRTHNQTPYIVYKESPNGKSCSSNVGFTGKKVSYVNLGKNCFVMGTVQHETLHALGFWHEQARPDRDRFVDIHYELIKKGSEINFKKRNFKEATTLDLPYDFGSIMHYSRFAFSRDSKSPTITPKKTLNVQADKMGQRINISKMDIAKLNTLYKCPNKYYKGRDVRHVKAVQSRPVKIQS
cccccccccccccccccccccccccccccEEEEEcccccHHHHHHHHHHHHHHHHcccEEEEEcccccccEEEEEEccccccccccccccccccEEEEccccccccHHHHHHHHHHHHHHcccccccccccEEEEccccccccccccccccccccccccccccccccccccccccccccccccEEEccccccccccccccccccHHHHHHHHHHcccccccccccccccccccccccccccc
ccHHccccccccccccccccccccccccEEEEEEcccccHHHHHHHHHHHHHHHHccEEEEEEcccccccEEEEEEcccccccEcEccccccccEEEEcccccccHEEEHHHHHHHHHHcccccccccHcHEEEEHHHcccccccccccccHHHHHcccccccccHHHEccccHccccccccEEEEccccccccccccccccccHHHHHHHHHHHcccccccccccccccccccccccEccc
mtegvdgfrdhdgvknlaKTPAKLWKDGLIYYEIDKNFSVDRKRFIVKALNNIMtfscvrfrrrthnqtpyivykespngkscssnvgftgkKVSYVNLGKNCFVMGTVQHETLHALgfwheqarpdrdrFVDIHYELIKKGseinfkkrnfkeattldlpydfgsimhysrfafsrdsksptitpkktLNVQADKMGQRINISKMDIAKLntlykcpnkyykgrdvrhvkavqsrpvkiqs
mtegvdgfrdhdgvknlaktpaklwkdgLIYYEIDKNFSVDRKRFIVKALNNimtfscvrfrrrthnqtpyivykespngkscSSNVGFTGKKVSYVNLGKNCFVMGTVQHETLHALGfwheqarpdRDRFVDIHYELikkgseinfkkrnfKEATTLDLPYDFGSIMHYSRFafsrdsksptitpkktlnvqadkmgqriniskmdiaklntlyKCPNkyykgrdvrhvkavqsrpvkiqs
MTEGVDGFRDHDGVKNLAKTPAKLWKDGLIYYEIDKNFSVDRKRFIVKALNNIMTFSCVRFRRRTHNQTPYIVYKESPNGKSCSSNVGFTGKKVSYVNLGKNCFVMGTVQHETLHALGFWHEQARPDRDRFVDIHYELIKKGSEINFKKRNFKEATTLDLPYDFGSIMHYSRFAFSRDSKSPTITPKKTLNVQADKMGQRINISKMDIAKLNTLYKCPNKYYKGRDVRHVKAVQSRPVKIQS
**************KNLAKTPAKLWKDGLIYYEIDKNFSVDRKRFIVKALNNIMTFSCVRFRRRTHNQTPYIVYKES****SCSSNVGFTGKKVSYVNLGKNCFVMGTVQHETLHALGFWHEQARPDRDRFVDIHYELIKKGSEINFKKRNFKEATTLDLPYDFGSIMHYSRFAF**********************GQRINISKMDIAKLNTLYKCPNKYYKGRDVRHV************
MTEGVDGFRDHDGVKNLAKTPAKLWKDGLIYYEIDKNFSVDRKRFIVKALNNIMTFSCVRFRRRTHNQTPYIVYKESPNGKSCSSNVGFTGKKVSYVNLGKNCFVMGTVQHETLHALGFWHEQARPDRDRFVDIHYELIKKGSEINFKKRNFKEATTLDLPYDFGSIMHYSRFAFSRDSKSPTITPKKTLNVQADKMGQRINISKMDIAKLNTLYKCPNKYYKG************PV*I**
MTEGVDGFRDHDGVKNLAKTPAKLWKDGLIYYEIDKNFSVDRKRFIVKALNNIMTFSCVRFRRRTHNQTPYIVYKESPNGKSCSSNVGFTGKKVSYVNLGKNCFVMGTVQHETLHALGFWHEQARPDRDRFVDIHYELIKKGSEINFKKRNFKEATTLDLPYDFGSIMHYSRFAFSRDSKSPTITPKKTLNVQADKMGQRINISKMDIAKLNTLYKCPNKYYKGRDVRHVK***********
*****DGFRDHDGVKNLAKTPAKLWKDGLIYYEIDKNFSVDRKRFIVKALNNIMTFSCVRFRRRTHNQTPYIVYKESPNGKSCSSNVGFTGKKVSYVNLGKNCFVMGTVQHETLHALGFWHEQARPDRDRFVDIHYELIKKGSEINFKKRNFKEATTLDLPYDFGSIMHYSRFAFSRDSKSPTITPKKTLNVQADKMGQRINISKMDIAKLNTLYKCPNKYYKGRDVR*VKAVQS*******
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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MTEGVDGFRDHDGVKNLAKTPAKLWKDGLIYYEIDKNFSVDRKRFIVKALNNIMTFSCVRFRRRTHNQTPYIVYKESPNGKSCSSNVGFTGKKVSYVNLGKNCFVMGTVQHETLHALGFWHEQARPDRDRFVDIHYELIKKGSEINFKKRNFKEATTLDLPYDFGSIMHYSRFAFSRDSKSPTITPKKTLNVQADKMGQRINISKMDIAKLNTLYKCPNKYYKGRDVRHVKAVQSRPVKIQS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query242 2.2.26 [Sep-21-2011]
P98063 991 Bone morphogenetic protei yes N/A 0.805 0.196 0.429 1e-37
P13497 986 Bone morphogenetic protei no N/A 0.805 0.197 0.429 4e-37
Q20176 951 Zinc metalloproteinase na yes N/A 0.793 0.201 0.4 2e-36
P98070 707 Bone morphogenetic protei N/A N/A 0.805 0.275 0.424 3e-36
Q9DER7 1008 Tolloid-like protein 1 OS yes N/A 0.797 0.191 0.413 4e-35
Q19269 503 Zinc metalloproteinase na no N/A 0.809 0.389 0.410 2e-34
O57382 1019 Tolloid-like protein 2 OS N/A N/A 0.797 0.189 0.408 2e-34
P98069 639 Bone morphogenetic protei yes N/A 0.842 0.319 0.380 3e-34
Q9Y6L7 1015 Tolloid-like protein 2 OS no N/A 0.797 0.190 0.403 3e-34
Q8JI28 1007 Tolloid-like protein 1 OS N/A N/A 0.797 0.191 0.413 4e-34
>sp|P98063|BMP1_MOUSE Bone morphogenetic protein 1 OS=Mus musculus GN=Bmp1 PE=1 SV=2 Back     alignment and function desciption
 Score =  156 bits (395), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 85/198 (42%), Positives = 111/198 (56%), Gaps = 3/198 (1%)

Query: 21  PAKLWKDGLIYYEIDKNFSVDRKRFIVKALNNIMTFSCVRFRRRTHNQTPYIVYKESPNG 80
           P ++W DG+I + I  NF+  ++    +A+ +    +CV F  RT ++  YIV+   P G
Sbjct: 131 PERVWPDGVIPFVIGGNFTGSQRAVFRQAMRHWEKHTCVTFLERT-DEDSYIVFTYRPCG 189

Query: 81  KSCSSNVGFTGKKVSYVNLGKNCFVMGTVQHETLHALGFWHEQARPDRDRFVDIHYELIK 140
             C S VG  G     +++GKNC   G V HE  H +GFWHE  RPDRDR V I  E I+
Sbjct: 190 --CCSYVGRRGGGPQAISIGKNCDKFGIVVHELGHVIGFWHEHTRPDRDRHVSIVRENIQ 247

Query: 141 KGSEINFKKRNFKEATTLDLPYDFGSIMHYSRFAFSRDSKSPTITPKKTLNVQADKMGQR 200
            G E NF K   +E  +L   YDF SIMHY+R  FSR     TI PK  +N     +GQR
Sbjct: 248 PGQEYNFLKMEVQEVESLGETYDFDSIMHYARNTFSRGIFLDTIVPKYEVNGVKPSIGQR 307

Query: 201 INISKMDIAKLNTLYKCP 218
             +SK DIA+   LYKCP
Sbjct: 308 TRLSKGDIAQARKLYKCP 325
Cleaves the C-terminal propeptides of procollagen I, II and III. Induces cartilage and bone formation. May participate in dorsoventral patterning during early development by cleaving chordin (CHRD).
Mus musculus (taxid: 10090)
EC: 3EC: .EC: 4EC: .EC: 2EC: 4EC: .EC: 1EC: 9
>sp|P13497|BMP1_HUMAN Bone morphogenetic protein 1 OS=Homo sapiens GN=BMP1 PE=1 SV=2 Back     alignment and function description
>sp|Q20176|NAS39_CAEEL Zinc metalloproteinase nas-39 OS=Caenorhabditis elegans GN=nas-39 PE=3 SV=3 Back     alignment and function description
>sp|P98070|BMP1_XENLA Bone morphogenetic protein 1 OS=Xenopus laevis GN=bmp1 PE=1 SV=1 Back     alignment and function description
>sp|Q9DER7|TLL1_CHICK Tolloid-like protein 1 OS=Gallus gallus GN=TLL1 PE=2 SV=1 Back     alignment and function description
>sp|Q19269|NAS14_CAEEL Zinc metalloproteinase nas-14 OS=Caenorhabditis elegans GN=nas-14 PE=2 SV=2 Back     alignment and function description
>sp|O57382|TLL2_XENLA Tolloid-like protein 2 OS=Xenopus laevis GN=tll2 PE=2 SV=1 Back     alignment and function description
>sp|P98069|BMPH_STRPU Bone morphogenetic protein 1 homolog OS=Strongylocentrotus purpuratus PE=2 SV=1 Back     alignment and function description
>sp|Q9Y6L7|TLL2_HUMAN Tolloid-like protein 2 OS=Homo sapiens GN=TLL2 PE=1 SV=1 Back     alignment and function description
>sp|Q8JI28|TLL1_XENLA Tolloid-like protein 1 OS=Xenopus laevis GN=tll1 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query242
260816324196 hypothetical protein BRAFLDRAFT_245310 [ 0.801 0.989 0.428 6e-40
383851625 1225 PREDICTED: tolloid-like protein 2-like [ 0.797 0.157 0.438 2e-39
241148271253 metalloproteinase, putative [Ixodes scap 0.818 0.782 0.417 1e-38
242023390 914 conserved hypothetical protein [Pediculu 0.946 0.250 0.405 1e-38
91091526 1080 PREDICTED: similar to bone morphogenetic 0.797 0.178 0.443 2e-38
345495274 1135 PREDICTED: tolloid-like protein 2-like [ 0.797 0.170 0.433 5e-38
328787501 1232 PREDICTED: tolkin [Apis mellifera] 0.797 0.156 0.433 6e-38
321454877 909 bone morphogenetic protein [Daphnia pule 0.871 0.232 0.419 6e-38
380022873 914 PREDICTED: LOW QUALITY PROTEIN: tolloid- 0.797 0.211 0.433 7e-38
340722615 1233 PREDICTED: tolloid-like protein 2-like [ 0.871 0.171 0.405 7e-38
>gi|260816324|ref|XP_002602921.1| hypothetical protein BRAFLDRAFT_245310 [Branchiostoma floridae] gi|229288235|gb|EEN58933.1| hypothetical protein BRAFLDRAFT_245310 [Branchiostoma floridae] Back     alignment and taxonomy information
 Score =  170 bits (430), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 87/203 (42%), Positives = 130/203 (64%), Gaps = 9/203 (4%)

Query: 15  KNLAKTPAKLWKDGLIYYEIDKNFSVDRKRFIVKALNNIMTFSCVRFRRRTHNQTPYIVY 74
           +N  +   K+W+   + Y ID + S + +  I +A+    T +CVRF++RT  +T YI++
Sbjct: 1   RNAIRDRTKIWQTREVPYSIDPSVSPEAQAAIQEAVQEFHTKTCVRFKQRT-TETDYILF 59

Query: 75  KESPNGKSCSSNVGFTGKKVSYVNLGKNCFVMGTVQHETLHALGFWHEQARPDRDRFVDI 134
           K+      C SNVG TG  +  +++G  C   GTV HE +HALGFWHEQ+R DRD ++++
Sbjct: 60  KKI---GGCWSNVGKTGG-MQELSVGDGCEFKGTVAHEMMHALGFWHEQSRTDRDNYINV 115

Query: 135 HYELIKKGSEINFKKRNFKEATTLDLPYDFGSIMHYSRFAFSRDSKSPTITPKKTLNVQA 194
            ++ I+ G E NF K +  +  TL +PYDFGSIMHYS+FAFS++ + PTITPK++    A
Sbjct: 116 MWQNIQDGKEHNFNKYSQDQVDTLGMPYDFGSIMHYSQFAFSKNGQ-PTITPKQST---A 171

Query: 195 DKMGQRINISKMDIAKLNTLYKC 217
           D +GQR  +S  D+ K+  LY C
Sbjct: 172 DAIGQRNGLSDTDVQKIQLLYSC 194

Source: Branchiostoma floridae

Species: Branchiostoma floridae

Genus: Branchiostoma

Family: Branchiostomidae

Order:

Class:

Phylum: Chordata

Superkingdom: Eukaryota
>gi|383851625|ref|XP_003701332.1| PREDICTED: tolloid-like protein 2-like [Megachile rotundata] Back     alignment and taxonomy information
>gi|241148271|ref|XP_002405728.1| metalloproteinase, putative [Ixodes scapularis] gi|215493741|gb|EEC03382.1| metalloproteinase, putative [Ixodes scapularis] Back     alignment and taxonomy information
>gi|242023390|ref|XP_002432117.1| conserved hypothetical protein [Pediculus humanus corporis] gi|212517491|gb|EEB19379.1| conserved hypothetical protein [Pediculus humanus corporis] Back     alignment and taxonomy information
>gi|91091526|ref|XP_970162.1| PREDICTED: similar to bone morphogenetic protein [Tribolium castaneum] gi|270001271|gb|EEZ97718.1| hypothetical protein TcasGA2_TC011197 [Tribolium castaneum] Back     alignment and taxonomy information
>gi|345495274|ref|XP_003427473.1| PREDICTED: tolloid-like protein 2-like [Nasonia vitripennis] Back     alignment and taxonomy information
>gi|328787501|ref|XP_393866.3| PREDICTED: tolkin [Apis mellifera] Back     alignment and taxonomy information
>gi|321454877|gb|EFX66029.1| bone morphogenetic protein [Daphnia pulex] Back     alignment and taxonomy information
>gi|380022873|ref|XP_003695260.1| PREDICTED: LOW QUALITY PROTEIN: tolloid-like protein 2-like [Apis florea] Back     alignment and taxonomy information
>gi|340722615|ref|XP_003399699.1| PREDICTED: tolloid-like protein 2-like [Bombus terrestris] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query242
UNIPROTKB|F1M798 990 Bmp1 "Protein Bmp1" [Rattus no 0.805 0.196 0.434 1.1e-35
WB|WBGene00003533 503 nas-14 [Caenorhabditis elegans 0.826 0.397 0.416 4e-35
UNIPROTKB|E2RJJ6 988 BMP1 "Uncharacterized protein" 0.805 0.197 0.429 4.8e-35
UNIPROTKB|F1M999 989 Bmp1 "Protein Bmp1" [Rattus no 0.805 0.197 0.429 4.8e-35
MGI|MGI:88176 991 Bmp1 "bone morphogenetic prote 0.805 0.196 0.429 4.8e-35
WB|WBGene00003555 951 nas-39 [Caenorhabditis elegans 0.855 0.217 0.383 5.6e-35
UNIPROTKB|E1BEV7 982 Bt.48679 "Uncharacterized prot 0.805 0.198 0.429 6e-35
UNIPROTKB|P13497 986 BMP1 "Bone morphogenetic prote 0.805 0.197 0.429 1.6e-34
UNIPROTKB|P98070 707 bmp1 "Bone morphogenetic prote 0.805 0.275 0.424 1.8e-34
ZFIN|ZDB-GENE-060818-1 1013 bmp1a "bone morphogenetic prot 0.805 0.192 0.419 2.6e-33
UNIPROTKB|F1M798 Bmp1 "Protein Bmp1" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
 Score = 396 (144.5 bits), Expect = 1.1e-35, P = 1.1e-35
 Identities = 86/198 (43%), Positives = 112/198 (56%)

Query:    21 PAKLWKDGLIYYEIDKNFSVDRKRFIVKALNNIMTFSCVRFRRRTHNQTPYIVYKESPNG 80
             P ++W DG+I + I  NF+ D++    +A+ +    +CV F  RT ++  YIV+   P G
Sbjct:   130 PERVWPDGVIPFVIGGNFTGDQRAVFRQAMRHWEKHTCVTFLERT-DEDSYIVFTYRPCG 188

Query:    81 KSCSSNVGFTGKKVSYVNLGKNCFVMGTVQHETLHALGFWHEQARPDRDRFVDIHYELIK 140
               C S VG  G     +++GKNC   G V HE  H +GFWHE  RPDRDR V I  E I+
Sbjct:   189 --CCSYVGRRGGGPQAISIGKNCDKFGIVVHELGHVIGFWHEHTRPDRDRHVSIVRENIQ 246

Query:   141 KGSEINFKKRNFKEATTLDLPYDFGSIMHYSRFAFSRDSKSPTITPKKTLNVQADKMGQR 200
              G E NF K   +E  +L   YDF SIMHY+R  FSR     TI PK  +N     +GQR
Sbjct:   247 PGQEYNFLKMEVQEVESLGETYDFDSIMHYARNTFSRGIFLDTIVPKYEVNGVKPSIGQR 306

Query:   201 INISKMDIAKLNTLYKCP 218
               +SK DIA+   LYKCP
Sbjct:   307 TRLSKGDIAQARKLYKCP 324
GO:0004222 "metalloendopeptidase activity" evidence=IEA
GO:0005509 "calcium ion binding" evidence=IEA
GO:0006508 "proteolysis" evidence=IEA
GO:0008270 "zinc ion binding" evidence=IEA
WB|WBGene00003533 nas-14 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
UNIPROTKB|E2RJJ6 BMP1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|F1M999 Bmp1 "Protein Bmp1" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
MGI|MGI:88176 Bmp1 "bone morphogenetic protein 1" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
WB|WBGene00003555 nas-39 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
UNIPROTKB|E1BEV7 Bt.48679 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|P13497 BMP1 "Bone morphogenetic protein 1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|P98070 bmp1 "Bone morphogenetic protein 1" [Xenopus laevis (taxid:8355)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-060818-1 bmp1a "bone morphogenetic protein 1a" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.4.24.210.737
3rd Layer3.4.240.691

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query242
pfam01400191 pfam01400, Astacin, Astacin (Peptidase family M12A 1e-71
cd04280180 cd04280, ZnMc_astacin_like, Zinc-dependent metallo 3e-71
cd04283182 cd04283, ZnMc_hatching_enzyme, Zinc-dependent meta 7e-59
cd04281200 cd04281, ZnMc_BMP1_TLD, Zinc-dependent metalloprot 2e-55
cd04282230 cd04282, ZnMc_meprin, Zinc-dependent metalloprotea 3e-42
smart00235139 smart00235, ZnMc, Zinc-dependent metalloprotease 4e-28
cd04268165 cd04268, ZnMc_MMP_like, Zinc-dependent metalloprot 5e-09
cd00203167 cd00203, ZnMc, Zinc-dependent metalloprotease 3e-08
cd04327198 cd04327, ZnMc_MMP_like_3, Zinc-dependent metallopr 1e-04
>gnl|CDD|201773 pfam01400, Astacin, Astacin (Peptidase family M12A) Back     alignment and domain information 
 Score =  216 bits (553), Expect = 1e-71
 Identities = 83/197 (42%), Positives = 115/197 (58%), Gaps = 6/197 (3%)

Query: 23  KLWKDGLIYYEIDKNFSVDRKRFIVKALNNIMTFSCVRFRRRTHNQTPYIVYKESPNGKS 82
           + W +G I Y ID +F+   +  I +A+ +    +C+RF  RT     Y+ +    +G  
Sbjct: 1   RKWPNGPIPYVIDSSFTGLARALIRQAMRHWEQKTCIRFVPRTAGDNNYLFF-FKGDG-- 57

Query: 83  CSSNVGFTGKKVSYVNLGKNCFVMGTVQHETLHALGFWHEQARPDRDRFVDIHYELIKKG 142
           C S VG  G     V+LG  C   G + HE  HALGFWHEQ+RPDRD +V I+++ I  G
Sbjct: 58  CYSYVGRNGGAQP-VSLGNGCDKFGIIVHELGHALGFWHEQSRPDRDDYVSINWQNIDPG 116

Query: 143 SEINFKKRNFKEATTLDLPYDFGSIMHYSRFAFSRDSKSPTITPKKTLNVQADKMGQRIN 202
            E NF+K +  E  +L +PYD+GSIMHY  +AFS++   PTI PK   N     +GQR  
Sbjct: 117 QEGNFEKYDPDEVDSLGVPYDYGSIMHYGPYAFSKNGYLPTIVPKD--NDYQATIGQRDK 174

Query: 203 ISKMDIAKLNTLYKCPN 219
           +S  DI K+N LYKCP+
Sbjct: 175 LSFGDIEKINKLYKCPS 191

The members of this family are enzymes that cleave peptides. These proteases require zinc for catalysis. Members of this family contain two conserved disulphide bridges, these are joined 1-4 and 2-3. Members of this family have an amino terminal propeptide which is cleaved to give the active protease domain. All other linked domains are found to the carboxyl terminus of this domain. This family includes: Astacin, a digestive enzyme from Crayfish. Meprin, a multiple domain membrane component that is constructed from a homologous alpha and beta chain. Proteins involved in morphogenesis such as human bone morphogenetic protein 1, and Tolloid from Drosophila melanogaster. Length = 191
>gnl|CDD|239807 cd04280, ZnMc_astacin_like, Zinc-dependent metalloprotease, astacin_like subfamily or peptidase family M12A, a group of zinc-dependent proteolytic enzymes with a HExxH zinc-binding site/active site Back     alignment and domain information
>gnl|CDD|239810 cd04283, ZnMc_hatching_enzyme, Zinc-dependent metalloprotease, hatching enzyme-like subfamily Back     alignment and domain information
>gnl|CDD|239808 cd04281, ZnMc_BMP1_TLD, Zinc-dependent metalloprotease; BMP1/TLD-like subfamily Back     alignment and domain information
>gnl|CDD|239809 cd04282, ZnMc_meprin, Zinc-dependent metalloprotease, meprin_like subfamily Back     alignment and domain information
>gnl|CDD|214576 smart00235, ZnMc, Zinc-dependent metalloprotease Back     alignment and domain information
>gnl|CDD|239796 cd04268, ZnMc_MMP_like, Zinc-dependent metalloprotease, MMP_like subfamily Back     alignment and domain information
>gnl|CDD|238124 cd00203, ZnMc, Zinc-dependent metalloprotease Back     alignment and domain information
>gnl|CDD|239819 cd04327, ZnMc_MMP_like_3, Zinc-dependent metalloprotease; MMP_like sub-family 3 Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 242
cd04282230 ZnMc_meprin Zinc-dependent metalloprotease, meprin 100.0
cd04281200 ZnMc_BMP1_TLD Zinc-dependent metalloprotease; BMP1 100.0
cd04283182 ZnMc_hatching_enzyme Zinc-dependent metalloproteas 100.0
) family of metalloendopeptidases encompasses a range of proteins found in hydra to humans, in mature and developmental systems []. Their functions include activation of growth factors, degradation of polypeptides, and processing of extracellular proteins []. The proteins are synthesised with N-terminal signal and pro-enzyme sequences, and many contain multiple domains C-terminal to the protease domain. They are either secreted from cells, or are associated with the plasma membrane. The astacin molecule adopts a kidney shape, with a deep active-site cleft between its N- and C-terminal domains []. The zinc ion, which lies at the bottom of the cleft, exhibits a unique penta-coordinated mode of binding, involving 3 histidine residues, a tyrosine and a water molecule (which is also bound to the carboxylate side chain of Glu93) []. The N-terminal domain comprises 2 alpha-helices and a 5-stranded beta-sheet. The overall topology of this domain is shared by the archetypal zinc-endopeptidase thermolysin. Astacin protease domains also share common features with serralysins, matrix metalloendopeptidases, and snake venom proteases; they cleave peptide bonds in polypeptides such as insulin B chain and bradykinin, and in proteins such as casein and gelatin; and they have arylamidase activity [].; GO: 0004222 metalloendopeptidase activity, 0006508 proteolysis; PDB: 3LQB_A 3EDH_A 3EDG_A 3EDI_A 1IAE_A 1IAB_A 1IAA_A 1AST_A 1IAC_A 1QJJ_A ...." target="_blank" href="http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=PF01400">PF01400191 Astacin: Astacin (Peptidase family M12A) This Pros 100.0
KOG3714|consensus 411 100.0
cd04280180 ZnMc_astacin_like Zinc-dependent metalloprotease, 100.0
cd04327198 ZnMc_MMP_like_3 Zinc-dependent metalloprotease; MM 100.0
smart00235140 ZnMc Zinc-dependent metalloprotease. Neutral zinc 100.0
cd04268165 ZnMc_MMP_like Zinc-dependent metalloprotease, MMP_ 99.98
cd00203167 ZnMc Zinc-dependent metalloprotease. This super-fa 99.88
cd04278157 ZnMc_MMP Zinc-dependent metalloprotease, matrix me 99.82
cd04277186 ZnMc_serralysin_like Zinc-dependent metalloproteas 99.75
PF00413154 Peptidase_M10: Matrixin This Prosite motif covers 99.66
cd04279156 ZnMc_MMP_like_1 Zinc-dependent metalloprotease; MM 99.65
cd04276197 ZnMc_MMP_like_2 Zinc-dependent metalloprotease; MM 99.08
KOG1565|consensus 469 99.03
PF12388211 Peptidase_M57: Dual-action HEIGH metallo-peptidase 99.0
PF02031132 Peptidase_M7: Streptomyces extracellular neutral p 98.37
PF13583206 Reprolysin_4: Metallo-peptidase family M12B Reprol 97.41
COG5549236 Predicted Zn-dependent protease [Posttranslational 97.4
PF13574173 Reprolysin_2: Metallo-peptidase family M12B Reprol 96.56
PF13582124 Reprolysin_3: Metallo-peptidase family M12B Reprol 96.56
PF05548314 Peptidase_M11: Gametolysin peptidase M11; InterPro 96.47
PF05572154 Peptidase_M43: Pregnancy-associated plasma protein 96.35
cd04267192 ZnMc_ADAM_like Zinc-dependent metalloprotease, ADA 96.14
PF13688196 Reprolysin_5: Metallo-peptidase family M12; PDB: 2 95.97
cd04275225 ZnMc_pappalysin_like Zinc-dependent metalloproteas 95.45
cd04272220 ZnMc_salivary_gland_MPs Zinc-dependent metalloprot 95.22
cd04269194 ZnMc_adamalysin_II_like Zinc-dependent metalloprot 95.19
COG1913181 Predicted Zn-dependent proteases [General function 95.0
cd04270244 ZnMc_TACE_like Zinc-dependent metalloprotease; TAC 94.68
cd04271228 ZnMc_ADAM_fungal Zinc-dependent metalloprotease, A 94.67
PRK13267179 archaemetzincin-like protein; Reviewed 94.47
cd04273207 ZnMc_ADAMTS_like Zinc-dependent metalloprotease, A 94.31
PF07998194 Peptidase_M54: Peptidase family M54; InterPro: IPR 94.28
PF01421199 Reprolysin: Reprolysin (M12B) family zinc metallop 93.75
PF11350203 DUF3152: Protein of unknown function (DUF3152); In 93.02
TIGR03296286 M6dom_TIGR03296 M6 family metalloprotease domain. 92.96
PF10462305 Peptidase_M66: Peptidase M66; InterPro: IPR019503 92.84
cd0264160 R3H_Smubp-2_like R3H domain of Smubp-2_like protei 92.48
PF12044423 Metallopep: Putative peptidase family; InterPro: I 92.26
PF05547 645 Peptidase_M6: Immune inhibitor A peptidase M6; Int 89.62
TIGR02290587 M3_fam_3 oligoendopeptidase, pepF/M3 family. The M 89.6
PF01457 521 Peptidase_M8: Leishmanolysin This Prosite motif co 89.38
cd06459427 M3B_Oligoendopeptidase_F Peptidase family M3B Olig 89.09
TIGR00181591 pepF oligoendopeptidase F. This family represents 89.02
PTZ00337 567 surface protease GP63; Provisional 88.07
KOG4525|consensus 614 87.16
PTZ00257 622 Glycoprotein GP63 (leishmanolysin); Provisional 86.14
cd0264060 R3H_NRF R3H domain of the NF-kappaB-repression fac 85.98
cd0600759 R3H_DEXH_helicase R3H domain of a group of protein 84.97
KOG3607|consensus 716 82.67
cd0264263 R3H_encore_like R3H domain of encore-like and DIP1 81.75
cd0264658 R3H_G-patch R3H domain of a group of fungal and pl 80.59
PF12725318 DUF3810: Protein of unknown function (DUF3810); In 80.55
TIGR02289549 M3_not_pepF oligoendopeptidase, M3 family. This fa 80.32
>cd04282 ZnMc_meprin Zinc-dependent metalloprotease, meprin_like subfamily Back     alignment and domain information 
Probab=100.00  E-value=7.8e-68  Score=449.45  Aligned_cols=204  Identities=37%  Similarity=0.621  Sum_probs=191.6

Q ss_pred             cCCCccCC--CCcccccCCCCCCCCCeEEEEECCCCCHHHHHHHHHHHHHHhccccEEEEecCCCCCCeEEEEccCCCCC
Q psy1890           5 VDGFRDHD--GVKNLAKTPAKLWKDGLIYYEIDKNFSVDRKRFIVKALNNIMTFSCVRFRRRTHNQTPYIVYKESPNGKS   82 (242)
Q Consensus         5 ~~g~~~~~--~~R~~~~~~~~~Wp~~~I~Y~~~~~~~~~~~~~I~~A~~~w~~~tci~F~~~~~~~~~~I~i~~~~~~~g   82 (242)
                      ++||+.++  +.|+|+.....+||+ +|||.|+++|+...++.|++||++|++.|||+|+|++. +.+||.|..   +.|
T Consensus        24 ~eGDI~l~~~~~R~a~~~~~~~Wp~-~VPY~i~~~~~~~~~~~I~~Am~~~~~~TCirF~~rt~-e~~yi~i~~---~~G   98 (230)
T cd04282          24 FEGDILLDEGQSRNGLIGDTYRWPF-PIPYILDDSLDLNAKGVILKAFEMYRLKSCVDFKPYEG-ESNYIFFFK---GSG   98 (230)
T ss_pred             ccccccCCcccccccccCcccCCCc-ceeEEECCCCCHHHHHHHHHHHHHHHhCCCeeEEECCC-CCcEEEEEc---CCC
Confidence            78999987  689999999999999 89999999999999999999999999999999999995 889999985   589


Q ss_pred             CCCccCCCCCccceEEeCCCCcccchhHHHHHHHhcccccccCCCCCceEEEeeecccccccccccccCccccccCCCcC
Q psy1890          83 CSSNVGFTGKKVSYVNLGKNCFVMGTVQHETLHALGFWHEQARPDRDRFVDIHYELIKKGSEINFKKRNFKEATTLDLPY  162 (242)
Q Consensus        83 c~S~vG~~~g~~q~i~l~~~c~~~~~i~HEigHALGl~HEh~rpDRD~yv~i~~~ni~~~~~~nf~k~~~~~~~~~g~~y  162 (242)
                      |||+||+.+|. |.|+|+.+|...|+|+|||||||||+|||+|||||+||.|+|+||.++..+||+|++...+.++|+||
T Consensus        99 C~S~vG~~gg~-q~isl~~~C~~~Gti~HEl~HalGf~HEqsRpDRD~yV~I~~~nI~~~~~~nF~k~~~~~~~~~g~pY  177 (230)
T cd04282          99 CWSMVGDQQGG-QNLSIGAGCDYKATVEHEFLHALGFYHEQSRSDRDDYVKIWWDQILSGREHNFNKYDDSFSTDLNTPY  177 (230)
T ss_pred             eeeccCccCCe-EEEEECCCcCCCchHHHHHHHHhCCcccccccccccceEEeecccCchHHHHhhhcCccccccCCCCC
Confidence            99999999888 99999999999999999999999999999999999999999999999999999999888888899999


Q ss_pred             CCCcccccCCCccccCCCCCeeeeccCCCcccc-ccCCcCcccHHHHHHHHhHCCC
Q psy1890         163 DFGSIMHYSRFAFSRDSKSPTITPKKTLNVQAD-KMGQRINISKMDIAKLNTLYKC  217 (242)
Q Consensus       163 D~~SIMhY~~~~f~~~g~~~ti~~~~~~~~~~~-~ig~r~~lS~~Di~~in~lY~C  217 (242)
                      ||+|||||++.+|++++..|||+|+++   ... .||||.+||+.|+++||+||+|
T Consensus       178 Dy~SIMHY~~~aFs~~~~~pTi~~~~~---~~~~~iGqr~~lS~~Di~~iN~~Y~C  230 (230)
T cd04282         178 DYESVMHYSPFSFNKGASEPTITTKIP---EFNDIIGQRLDFSDIDLERLNRMYNC  230 (230)
T ss_pred             CcccccccCCCccccCCCCceeeecCC---cccccccccCCCCHHHHHHHHHhcCC
Confidence            999999999999999844499999987   443 6999999999999999999999

Meprins are membrane-bound or secreted extracellular proteases, which cleave a variety of targets, including peptides such as parathyroid hormone, gastrin, and cholecystokinin, cytokines such as osteopontin, and proteins such as collagen IV, fibronectin, casein and gelatin. Meprins may also be able to release proteins from the cell surface. Closely related meprin alpha- and beta-subunits form homo- and hetero-oligomers; these complexes are found on epithelial cells of the intestine, for example, and are also expressed in certain cancer cells.
>cd04281 ZnMc_BMP1_TLD Zinc-dependent metalloprotease; BMP1/TLD-like subfamily Back     alignment and domain information
>cd04283 ZnMc_hatching_enzyme Zinc-dependent metalloprotease, hatching enzyme-like subfamily Back     alignment and domain information
>PF01400 Astacin: Astacin (Peptidase family M12A) This Prosite motif covers only the active site Back     alignment and domain information
>KOG3714|consensus Back     alignment and domain information
>cd04280 ZnMc_astacin_like Zinc-dependent metalloprotease, astacin_like subfamily or peptidase family M12A, a group of zinc-dependent proteolytic enzymes with a HExxH zinc-binding site/active site Back     alignment and domain information
>cd04327 ZnMc_MMP_like_3 Zinc-dependent metalloprotease; MMP_like sub-family 3 Back     alignment and domain information
>smart00235 ZnMc Zinc-dependent metalloprotease Back     alignment and domain information
>cd04268 ZnMc_MMP_like Zinc-dependent metalloprotease, MMP_like subfamily Back     alignment and domain information
>cd00203 ZnMc Zinc-dependent metalloprotease Back     alignment and domain information
>cd04278 ZnMc_MMP Zinc-dependent metalloprotease, matrix metalloproteinase (MMP) sub-family Back     alignment and domain information
>cd04277 ZnMc_serralysin_like Zinc-dependent metalloprotease, serralysin_like subfamily Back     alignment and domain information
>PF00413 Peptidase_M10: Matrixin This Prosite motif covers only the active site Back     alignment and domain information
>cd04279 ZnMc_MMP_like_1 Zinc-dependent metalloprotease; MMP_like sub-family 1 Back     alignment and domain information
>cd04276 ZnMc_MMP_like_2 Zinc-dependent metalloprotease; MMP_like sub-family 2 Back     alignment and domain information
>KOG1565|consensus Back     alignment and domain information
>PF12388 Peptidase_M57: Dual-action HEIGH metallo-peptidase; InterPro: IPR024653 This entry represents the metallopeptidases M10, M27 and M57 Back     alignment and domain information
>PF02031 Peptidase_M7: Streptomyces extracellular neutral proteinase (M7) family; InterPro: IPR000013 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>PF13583 Reprolysin_4: Metallo-peptidase family M12B Reprolysin-like Back     alignment and domain information
>COG5549 Predicted Zn-dependent protease [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF13574 Reprolysin_2: Metallo-peptidase family M12B Reprolysin-like; PDB: 1KAP_P 1JIW_P 1AKL_A 1OM7_A 1OM8_A 1O0T_A 1OM6_A 1H71_P 1O0Q_A 1OMJ_A Back     alignment and domain information
>PF13582 Reprolysin_3: Metallo-peptidase family M12B Reprolysin-like; PDB: 3P24_C Back     alignment and domain information
>PF05548 Peptidase_M11: Gametolysin peptidase M11; InterPro: IPR008752 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>PF05572 Peptidase_M43: Pregnancy-associated plasma protein-A; InterPro: IPR008754 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>cd04267 ZnMc_ADAM_like Zinc-dependent metalloprotease, ADAM_like or reprolysin_like subgroup Back     alignment and domain information
>PF13688 Reprolysin_5: Metallo-peptidase family M12; PDB: 2FV5_B 3EWJ_A 3KME_A 3L0T_B 1BKC_E 3G42_D 2I47_D 2FV9_B 3LEA_A 1ZXC_B Back     alignment and domain information
>cd04275 ZnMc_pappalysin_like Zinc-dependent metalloprotease, pappalysin_like subfamily Back     alignment and domain information
>cd04272 ZnMc_salivary_gland_MPs Zinc-dependent metalloprotease, salivary_gland_MPs Back     alignment and domain information
>cd04269 ZnMc_adamalysin_II_like Zinc-dependent metalloprotease; adamalysin_II_like subfamily Back     alignment and domain information
>COG1913 Predicted Zn-dependent proteases [General function prediction only] Back     alignment and domain information
>cd04270 ZnMc_TACE_like Zinc-dependent metalloprotease; TACE_like subfamily Back     alignment and domain information
>cd04271 ZnMc_ADAM_fungal Zinc-dependent metalloprotease, ADAM_fungal subgroup Back     alignment and domain information
>PRK13267 archaemetzincin-like protein; Reviewed Back     alignment and domain information
>cd04273 ZnMc_ADAMTS_like Zinc-dependent metalloprotease, ADAMTS_like subgroup Back     alignment and domain information
>PF07998 Peptidase_M54: Peptidase family M54; InterPro: IPR012962 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>PF01421 Reprolysin: Reprolysin (M12B) family zinc metalloprotease This Prosite motif covers only the active site Back     alignment and domain information
>PF11350 DUF3152: Protein of unknown function (DUF3152); InterPro: IPR022603 This entry represents Actinobacteria proteins of unknown function Back     alignment and domain information
>TIGR03296 M6dom_TIGR03296 M6 family metalloprotease domain Back     alignment and domain information
>PF10462 Peptidase_M66: Peptidase M66; InterPro: IPR019503 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>cd02641 R3H_Smubp-2_like R3H domain of Smubp-2_like proteins Back     alignment and domain information
>PF12044 Metallopep: Putative peptidase family; InterPro: IPR021917 This family of proteins is functionally uncharacterised Back     alignment and domain information
>PF05547 Peptidase_M6: Immune inhibitor A peptidase M6; InterPro: IPR008757 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>TIGR02290 M3_fam_3 oligoendopeptidase, pepF/M3 family Back     alignment and domain information
>PF01457 Peptidase_M8: Leishmanolysin This Prosite motif covers only the active site Back     alignment and domain information
>cd06459 M3B_Oligoendopeptidase_F Peptidase family M3B Oligopeptidase F (PepF; Pz-peptidase B; EC 3 Back     alignment and domain information
>TIGR00181 pepF oligoendopeptidase F Back     alignment and domain information
>PTZ00337 surface protease GP63; Provisional Back     alignment and domain information
>KOG4525|consensus Back     alignment and domain information
>PTZ00257 Glycoprotein GP63 (leishmanolysin); Provisional Back     alignment and domain information
>cd02640 R3H_NRF R3H domain of the NF-kappaB-repression factor (NRF) Back     alignment and domain information
>cd06007 R3H_DEXH_helicase R3H domain of a group of proteins which also contain a DEXH-box helicase domain, and may function as ATP-dependent DNA or RNA helicases Back     alignment and domain information
>KOG3607|consensus Back     alignment and domain information
>cd02642 R3H_encore_like R3H domain of encore-like and DIP1-like proteins Back     alignment and domain information
>cd02646 R3H_G-patch R3H domain of a group of fungal and plant proteins with unknown function, who also contain a G-patch domain Back     alignment and domain information
>PF12725 DUF3810: Protein of unknown function (DUF3810); InterPro: IPR024294 This family of bacterial proteins is functionally uncharacterised Back     alignment and domain information
>TIGR02289 M3_not_pepF oligoendopeptidase, M3 family Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query242
3edh_A201 Crystal Structure Of Bone Morphogenetic Protein 1 P 2e-38
3edg_A202 Crystal Structure Of Bone Morphogenetic Protein 1 P 2e-38
3edi_A201 Crystal Structure Of Tolloid-Like Protease 1 (Tll-1 5e-35
4gwm_A 592 Crystal Structure Of Human Promeprin Beta Length = 1e-28
4gwn_A 553 Crystal Structure Of Human Mature Meprin Beta Lengt 1e-28
3lqb_A199 Crystal Structure Of The Hatching Enzyme Zhe1 From 2e-28
1ast_A200 Structure Of Astacin And Implications For Activatio 2e-15
3lq0_A235 Zymogen Structure Of Crayfish Astacin Metallopeptid 8e-15
>pdb|3EDH|A Chain A, Crystal Structure Of Bone Morphogenetic Protein 1 Protease Domain In Complex With Partially Bound Dmso Length = 201 Back     alignment and structure 
Iteration: 1

 Score =  155 bits (393), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 85/198 (42%), Positives = 111/198 (56%), Gaps = 3/198 (1%)
Query: 21  PAKLWKDGLIYYEIDKNFSVDRKRFIVKALNNIMTFSCVRFRRRTHNQTPYIVYKESPNG 80
           P ++W DG+I + I  NF+  ++    +A+ +    +CV F  RT ++  YIV+   P G
Sbjct: 6   PERVWPDGVIPFVIGGNFTGSQRAVFRQAMRHWEKHTCVTFLERT-DEDSYIVFTYRPCG 64
Query: 81  KSCSSNVGFTGKKVSYVNLGKNCFVMGTVQHETLHALGFWHEQARPDRDRFVDIHYELIK 140
             C S VG  G     +++GKNC   G V HE  H +GFWHE  RPDRDR V I  E I+
Sbjct: 65  --CCSYVGRRGGGPQAISIGKNCDKFGIVVHELGHVVGFWHEHTRPDRDRHVSIVRENIQ 122
Query: 141 KGSEINFKKRNFKEATTLDLPYDFGSIMHYSRFAFSRDSKSPTITPKKTLNVQADKMGQR 200
            G E NF K   +E  +L   YDF SIMHY+R  FSR     TI PK  +N     +GQR
Sbjct: 123 PGQEYNFLKMEPQEVESLGETYDFDSIMHYARNTFSRGIFLDTIVPKYEVNGVKPPIGQR 182
Query: 201 INISKMDIAKLNTLYKCP 218
             +SK DIA+   LYKCP
Sbjct: 183 TRLSKGDIAQARKLYKCP 200
>pdb|3EDG|A Chain A, Crystal Structure Of Bone Morphogenetic Protein 1 Protease Domain Length = 202 Back     alignment and structure
>pdb|3EDI|A Chain A, Crystal Structure Of Tolloid-Like Protease 1 (Tll-1) Protease Domain Length = 201 Back     alignment and structure
>pdb|4GWM|A Chain A, Crystal Structure Of Human Promeprin Beta Length = 592 Back     alignment and structure
>pdb|4GWN|A Chain A, Crystal Structure Of Human Mature Meprin Beta Length = 553 Back     alignment and structure
>pdb|3LQB|A Chain A, Crystal Structure Of The Hatching Enzyme Zhe1 From The Zebrafish Danio Rerio Length = 199 Back     alignment and structure
>pdb|1AST|A Chain A, Structure Of Astacin And Implications For Activation Of Astacins And Zinc-Ligation Of Collagenases Length = 200 Back     alignment and structure
>pdb|3LQ0|A Chain A, Zymogen Structure Of Crayfish Astacin Metallopeptidase Length = 235 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query242
3edh_A201 Bone morphogenetic protein 1; vicinal disulfide, a 1e-84
3lqb_A199 Hatching enzyme, LOC792177 protein; hydrolase, met 2e-72
3lq0_A235 Proastacin; metallopeptidase, zymogen activation, 2e-72
>3edh_A Bone morphogenetic protein 1; vicinal disulfide, alternative splicing, calcium, chondrogenesis, cleavage on PAIR of basic residues, cytokine; 1.25A {Homo sapiens} PDB: 3edg_A 3edi_A Length = 201 Back     alignment and structure
 Score =  249 bits (638), Expect = 1e-84
 Identities = 85/198 (42%), Positives = 111/198 (56%), Gaps = 3/198 (1%)

Query: 21  PAKLWKDGLIYYEIDKNFSVDRKRFIVKALNNIMTFSCVRFRRRTHNQTPYIVYKESPNG 80
           P ++W DG+I + I  NF+  ++    +A+ +    +CV F  RT ++  YIV+   P G
Sbjct: 6   PERVWPDGVIPFVIGGNFTGSQRAVFRQAMRHWEKHTCVTFLERT-DEDSYIVFTYRPCG 64

Query: 81  KSCSSNVGFTGKKVSYVNLGKNCFVMGTVQHETLHALGFWHEQARPDRDRFVDIHYELIK 140
             C S VG  G     +++GKNC   G V HE  H +GFWHE  RPDRDR V I  E I+
Sbjct: 65  --CCSYVGRRGGGPQAISIGKNCDKFGIVVHELGHVVGFWHEHTRPDRDRHVSIVRENIQ 122

Query: 141 KGSEINFKKRNFKEATTLDLPYDFGSIMHYSRFAFSRDSKSPTITPKKTLNVQADKMGQR 200
            G E NF K   +E  +L   YDF SIMHY+R  FSR     TI PK  +N     +GQR
Sbjct: 123 PGQEYNFLKMEPQEVESLGETYDFDSIMHYARNTFSRGIFLDTIVPKYEVNGVKPPIGQR 182

Query: 201 INISKMDIAKLNTLYKCP 218
             +SK DIA+   LYKCP
Sbjct: 183 TRLSKGDIAQARKLYKCP 200
>3lqb_A Hatching enzyme, LOC792177 protein; hydrolase, metalloprotease, astacin, metal- protease; 1.10A {Danio rerio} Length = 199 Back     alignment and structure
>3lq0_A Proastacin; metallopeptidase, zymogen activation, proenzyme, protease, Z disulfide bond, hydrolase, metal-binding, metalloprotease,; 1.45A {Astacus astacus} PDB: 1iab_A 1iaa_A 1ast_A 1iac_A 1iad_A 1iae_A 1qji_A* 1qjj_A Length = 235 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query242
3edh_A201 Bone morphogenetic protein 1; vicinal disulfide, a 100.0
3lq0_A235 Proastacin; metallopeptidase, zymogen activation, 100.0
3lqb_A199 Hatching enzyme, LOC792177 protein; hydrolase, met 100.0
4gwm_A 592 Meprin A subunit beta; mulidomain structure, hydro 100.0
2jsd_A160 Matrix metalloproteinase-20; MMP-NNGH, structural 99.92
1hy7_A173 Stromelysin-1, MMP-3; mixed alpha beta structure, 99.91
1cge_A168 Fibroblast collagenase; hydrolase (metalloprotease 99.9
2y6d_A174 Matrilysin; hydrolase; HET: TQJ; 1.60A {Homo sapie 99.89
1hv5_A165 Stromelysin 3; inhibition, phosphinic inhibitor, h 99.89
1i76_A163 MMP-8;, neutrophil collagenase; hydrolase, complex 99.87
1slm_A255 Stromelysin-1; hydrolase, metalloprotease, fibrobl 99.87
2xs4_A167 Karilysin protease; hydrolase, bacterial MMP, viru 99.86
3ayu_A167 72 kDa type IV collagenase; protease, hydrolase-hy 99.85
1y93_A159 Macrophage metalloelastase; matrix metalloproteina 99.85
2ovx_A159 Matrix metalloproteinase-9 (EC 3.4.24.35) (MMP-9) 99.84
1su3_A 450 Interstitial collagenase; prodomain, hemopexin dom 99.79
1rm8_A169 MMP-16, matrix metalloproteinase-16, MT3-MMP; memb 99.79
1k7i_A 479 PROC, secreted protease C; metalloprotease, hydrol 99.78
1kap_P 479 Alkaline protease; calcium binding protein, zinc m 99.76
1sat_A 471 Serratia protease; parallel beta helix, parallel b 99.76
1g9k_A 463 Serralysin; beta jelly roll, hydrolase; 1.96A {Pse 99.75
3ba0_A 365 Macrophage metalloelastase; FULL-length MMP-12, he 99.74
830c_A168 MMP-13, MMP-13; matrix metalloprotease; HET: RS1; 99.73
3ma2_D181 Matrix metalloproteinase-14; protein - protein com 99.6
1eak_A 421 72 kDa type IV collagenase; hydrolase-hydrolase in 99.29
1c7k_A132 NCNP, zinc endoprotease; alpha and beta protein, m 99.29
1l6j_A 425 Matrix metalloproteinase-9; twisted beta sheet fla 99.19
1ck7_A 631 Protein (gelatinase A); hydrolase (metalloprotease 98.95
2cki_A262 Ulilysin; metalloprotease, hydrolase; HET: ARG; 1. 95.67
3p24_A397 BFT-3; metzincins, metalloendopeptidase, hydrolase 95.38
2w15_A202 Zinc metalloproteinase BAP1; hydrolase inhibitor c 94.94
1bud_A197 Protein (acutolysin A); metalloproteinase, snake v 94.82
1qua_A197 Acutolysin-C, hemorrhagin III; metalloprotease, he 94.79
4axq_A163 Archaemetzincin; metalloprotease, protease, hydrol 94.76
1kuf_A203 Atrolysin E, metalloproteinase; alpha/beta protein 94.75
1atl_A202 Atrolysin C; metalloendopeptidase, hydrolase-hydro 94.75
1yp1_A202 FII; FII hydrolase; 1.90A {Deinagkistrodon acutus} 94.7
3b8z_A217 Protein adamts-5; alpha/beta, hydrolase; HET: 294; 94.6
2ddf_A257 ADAM 17; hydrolase; HET: INN CIT; 1.70A {Homo sapi 94.14
2v4b_A300 Adamts-1; zymogen, protease, hydrolase, metallopro 94.0
1r55_A214 ADAM 33; metalloprotease, inhibitor, asthma, hydro 93.93
4dd8_A208 Disintegrin and metalloproteinase domain-containi 93.81
2rjp_A316 Adamts-4; metalloprotease domain, aggrecanase, cle 93.74
2rjq_A378 Adamts-5; metalloprotease domain, aggrecanase, cle 93.57
2i47_A288 ADAM 17; TACE-inhibitor complex, hydrolase; HET: I 93.39
3lmc_A210 Peptidase, zinc-dependent; structural genomics, PS 93.37
2x7m_A195 Archaemetzincin; metalloprotease, protease, hydrol 93.08
2ero_A 427 VAP-1, vascular apoptosis-inducing protein 1; meta 92.88
2e3x_A 427 Coagulation factor X-activating enzyme light CHAI; 92.8
2dw0_A 419 Catrocollastatin; apoptotic toxin, SVMP, metallopr 92.74
3k7n_A 397 K-like; SVMP, hydrolase; HET: NAG FUC FUL; 2.30A { 92.23
3k7l_A 422 Atragin; SVMP, metalloprotease, hydrolase; HET: NA 91.85
1lml_A 478 Leishmanolysin; metalloprotease, glycoprotein; 1.8 90.8
3g5c_A 510 ADAM 22; alpha/beta fold, cross-linked domain, cel 90.41
3ujz_A 869 Metalloprotease STCE; mucin-type glycoprotein, hyd 83.5
>3edh_A Bone morphogenetic protein 1; vicinal disulfide, alternative splicing, calcium, chondrogenesis, cleavage on PAIR of basic residues, cytokine; 1.25A {Homo sapiens} SCOP: d.92.1.0 PDB: 3edg_A 3edi_A Back     alignment and structure
Probab=100.00  E-value=6.1e-67  Score=437.58  Aligned_cols=200  Identities=42%  Similarity=0.690  Sum_probs=181.7

Q ss_pred             cccCCCCCCCCCeEEEEECCCCCHHHHHHHHHHHHHHhccccEEEEecCCCCCCeEEEEccCCCCCCCCccCCCCCccce
Q psy1890          17 LAKTPAKLWKDGLIYYEIDKNFSVDRKRFIVKALNNIMTFSCVRFRRRTHNQTPYIVYKESPNGKSCSSNVGFTGKKVSY   96 (242)
Q Consensus        17 ~~~~~~~~Wp~~~I~Y~~~~~~~~~~~~~I~~A~~~w~~~tci~F~~~~~~~~~~I~i~~~~~~~gc~S~vG~~~g~~q~   96 (242)
                      |+.....+||+++|||.|+++|++.++++|++||+.|++.|||+|++++ ++.+||.|...  +.||||+||+.++..|.
T Consensus         2 ~~~~~~~~Wp~~~VpY~I~~~~s~~~~~~I~~A~~~w~~~TCIrFv~~t-~e~dyI~f~~~--~~GC~S~vG~~g~~~q~   78 (201)
T 3edh_A            2 ATSRPERVWPDGVIPFVIGGNFTGSQRAVFRQAMRHWEKHTCVTFLERT-DEDSYIVFTYR--PCGCCSYVGRRGGGPQA   78 (201)
T ss_dssp             BBCCGGGSCGGGEEEEEECSSCCHHHHHHHHHHHHHHHHHSSCEEEECS-SCSSEEEEEEC--CSCSCCCSSCCCSSEEE
T ss_pred             CcCCCCCcCCCcEEEEEECCCCCHHHHHHHHHHHHHHHhhccceEEEcC-CCCcEEEEEcC--CCCCccccCCcCCceee
Confidence            4556678999999999999999999999999999999999999999999 48899999875  45999999999865599


Q ss_pred             EEeCCCCcccchhHHHHHHHhcccccccCCCCCceEEEeeecccccccccccccCccccccCCCcCCCCcccccCCCccc
Q psy1890          97 VNLGKNCFVMGTVQHETLHALGFWHEQARPDRDRFVDIHYELIKKGSEINFKKRNFKEATTLDLPYDFGSIMHYSRFAFS  176 (242)
Q Consensus        97 i~l~~~c~~~~~i~HEigHALGl~HEh~rpDRD~yv~i~~~ni~~~~~~nf~k~~~~~~~~~g~~yD~~SIMhY~~~~f~  176 (242)
                      ++|+.+|...|+|+|||||||||+|||+|||||+||+|+|+||.++..+||.|++...+.++|+||||+|||||++.+|+
T Consensus        79 ~sl~~~C~~~g~i~HEl~HalGf~HE~~R~DRD~yV~I~~~ni~~~~~~nF~k~~~~~~~~~g~~YDy~SvMHY~~~aFs  158 (201)
T 3edh_A           79 ISIGKNCDKFGIVVHELGHVVGFWHEHTRPDRDRHVSIVRENIQPGQEYNFLKMEPQEVESLGETYDFDSIMHYARNTFS  158 (201)
T ss_dssp             EEECGGGCSHHHHHHHHHHHHTBCCGGGSTTGGGTEEECGGGBCTTCGGGGCCCCGGGBCCTTCCCCTTCTTCCCTTTTB
T ss_pred             eecCCCcCccchhHHHHHHHhcchhhhhhhccCcEEEEehhccCcchhHhhhcCChhhccccCCccCCCCcccCCCcccc
Confidence            99999999999999999999999999999999999999999999999999999998888999999999999999999999


Q ss_pred             cCCCCCeeeeccCCCccccccCCcCcccHHHHHHHHhHCCCCC
Q psy1890         177 RDSKSPTITPKKTLNVQADKMGQRINISKMDIAKLNTLYKCPN  219 (242)
Q Consensus       177 ~~g~~~ti~~~~~~~~~~~~ig~r~~lS~~Di~~in~lY~C~~  219 (242)
                      ++...+||+|+.+.+.-...||||.+||+.||++||+||+|+.
T Consensus       159 ~~~~~~Ti~p~~~~~~~~~~iGqr~~lS~~Di~~in~lY~C~~  201 (201)
T 3edh_A          159 RGIFLDTIVPKYEVNGVKPPIGQRTRLSKGDIAQARKLYKCPA  201 (201)
T ss_dssp             SSTTSCSEEESSCBTTBCCCCCCCSSCCHHHHHHHHHHTTCCC
T ss_pred             CCCCCCceEeCCCCCcccccCcccCCCCHHHHHHHHHhcCCCC
Confidence            9854599999875211113799999999999999999999974
>3lq0_A Proastacin; metallopeptidase, zymogen activation, proenzyme, protease, D bond, hydrolase, metal-binding, metalloprotease, zymogen; 1.45A {Astacus astacus} PDB: 1iab_A 1iaa_A 1ast_A 1iac_A 1iad_A 1iae_A 1qji_A* 1qjj_A Back     alignment and structure
>3lqb_A Hatching enzyme, LOC792177 protein; hydrolase, metalloprotease, astacin, metal- protease; 1.10A {Danio rerio} Back     alignment and structure
>4gwm_A Meprin A subunit beta; mulidomain structure, hydrolase; HET: NAG BMA FUC MAN; 1.85A {Homo sapiens} PDB: 4gwn_A* Back     alignment and structure
>2jsd_A Matrix metalloproteinase-20; MMP-NNGH, structural genomics, structural proteomics in europe, spine, spine-2, spine2-complexes, hydrolase; HET: NGH; NMR {Homo sapiens} Back     alignment and structure
>1hy7_A Stromelysin-1, MMP-3; mixed alpha beta structure, zinc protease, inhibited, hydrol; HET: MBS; 1.50A {Homo sapiens} SCOP: d.92.1.11 PDB: 1biw_A* 1bm6_A* 1bqo_A* 1b3d_A* 1cqr_A 1d5j_A* 1d7x_A* 1d8f_A* 1d8m_A* 1g05_A* 1g49_A* 1c3i_A* 1sln_A* 1uea_A 2srt_A* 1ums_A* 1umt_A* 2d1o_A* 3oho_A* 1ciz_A* ... Back     alignment and structure
>1cge_A Fibroblast collagenase; hydrolase (metalloprotease); 1.90A {Homo sapiens} SCOP: d.92.1.11 PDB: 2j0t_A 1ayk_A 1hfc_A* 2ayk_A 2tcl_A* 3ayk_A* 4ayk_A* 1cgl_A* 1cgf_A 966c_A* 3shi_A Back     alignment and structure
>2y6d_A Matrilysin; hydrolase; HET: TQJ; 1.60A {Homo sapiens} PDB: 2ddy_A* 1mmq_A* 1mmp_A* 1mmr_A* 2y6c_A* Back     alignment and structure
>1hv5_A Stromelysin 3; inhibition, phosphinic inhibitor, hydrolase; HET: CPS RXP; 2.60A {Mus musculus} SCOP: d.92.1.11 Back     alignment and structure
>1i76_A MMP-8;, neutrophil collagenase; hydrolase, complex (metalloprotease/inhibitor); HET: BSI; 1.20A {Homo sapiens} SCOP: d.92.1.11 PDB: 1i73_A* 1jao_A* 1jap_A 1jaq_A* 1jj9_A* 1mmb_A* 1zp5_A* 1zs0_A* 1zvx_A* 3dng_A* 3dpe_A* 3dpf_A* 1kbc_A* 1jan_A* 1bzs_A* 1mnc_A* 2oy2_A 1a86_A* 1jh1_A* 1a85_A ... Back     alignment and structure
>1slm_A Stromelysin-1; hydrolase, metalloprotease, fibroblast, collagen degradation; 1.90A {Homo sapiens} SCOP: a.20.1.2 d.92.1.11 Back     alignment and structure
>2xs4_A Karilysin protease; hydrolase, bacterial MMP, virulence factor, metalloprotease, dependent, peptidase; 1.70A {Tannerella forsythia} PDB: 2xs3_A Back     alignment and structure
>3ayu_A 72 kDa type IV collagenase; protease, hydrolase-hydrolase inhibitor complex; 2.00A {Homo sapiens} PDB: 1qib_A 1hov_A* Back     alignment and structure
>1y93_A Macrophage metalloelastase; matrix metalloproteinase, MMP12, complex (elastase inhibitor), acetohydroxamic acid, hydrola; 1.03A {Homo sapiens} SCOP: d.92.1.11 PDB: 1rmz_A 1ycm_A* 1z3j_A* 2hu6_A* 2oxu_A 2oxw_A 2oxz_A 3lik_A* 3lil_A* 3lir_A* 3ljg_A* 1os9_A 1os2_A 3f17_A* 3ehy_A* 3ehx_A* 3f15_A* 3f16_A* 3f18_A* 3f19_A* ... Back     alignment and structure
>2ovx_A Matrix metalloproteinase-9 (EC 3.4.24.35) (MMP-9) type IV collagenase) (92 kDa gelatinase)...; S1-prime pocket, hydrolase-hydrola inhibitor complex; HET: 4MR; 2.00A {Homo sapiens} SCOP: d.92.1.11 PDB: 2ovz_A* 2ow0_A* 2ow1_A* 2ow2_A* 1gkd_A* 1gkc_A* Back     alignment and structure
>1su3_A Interstitial collagenase; prodomain, hemopexin domain, exocite, structural proteomics in europe, spine, structural genomics, hydrolase; HET: EPE; 2.20A {Homo sapiens} SCOP: a.20.1.2 b.66.1.1 d.92.1.11 PDB: 2clt_A 1fbl_A* Back     alignment and structure
>1rm8_A MMP-16, matrix metalloproteinase-16, MT3-MMP; membrane type - matrix metalloproteinase, batimastat, hydroxamate inhibitor, protease, hydrolase; HET: BAT; 1.80A {Homo sapiens} SCOP: d.92.1.11 Back     alignment and structure
>1k7i_A PROC, secreted protease C; metalloprotease, hydrolase; 1.59A {Erwinia chrysanthemi} SCOP: b.80.7.1 d.92.1.6 PDB: 1k7g_A 1k7q_A 1go8_P 3hbv_P 3hda_P 3hbu_P 1go7_P 3hb2_P Back     alignment and structure
>1kap_P Alkaline protease; calcium binding protein, zinc metalloprotease; 1.64A {Pseudomonas aeruginosa} SCOP: b.80.7.1 d.92.1.6 PDB: 1jiw_P 1akl_A Back     alignment and structure
>1sat_A Serratia protease; parallel beta helix, parallel beta roll, hydrolase (serine protease); 1.75A {Serratia marcescens} SCOP: b.80.7.1 d.92.1.6 PDB: 1af0_A* 1smp_A 1srp_A Back     alignment and structure
>1g9k_A Serralysin; beta jelly roll, hydrolase; 1.96A {Pseudomonas} SCOP: b.80.7.1 d.92.1.6 PDB: 1o0q_A 1o0t_A 1om6_A 1om7_A 1om8_A 1omj_A 1h71_P Back     alignment and structure
>3ba0_A Macrophage metalloelastase; FULL-length MMP-12, hemopexin domain, catalytic domain, domain interaction., calcium, extracellular matrix; 3.00A {Homo sapiens} PDB: 2jxy_A Back     alignment and structure
>830c_A MMP-13, MMP-13; matrix metalloprotease; HET: RS1; 1.60A {Homo sapiens} SCOP: d.92.1.11 PDB: 456c_A* 1you_A* 4a7b_A* 3tvc_A* 1eub_A* 1xuc_A* 1xud_A* 1xur_A* 2yig_A* 3elm_A* 3i7g_A* 3i7i_A* 3zxh_A* 2ow9_A* 2ozr_A* 3kek_A* 3kej_A* 3kec_A* 2d1n_A* 1fls_A* ... Back     alignment and structure
>3ma2_D Matrix metalloproteinase-14; protein - protein complex, cleavage on PAIR of basic residue disulfide bond, membrane, metal-binding; 2.05A {Homo sapiens} SCOP: d.92.1.11 PDB: 1bqq_M 1buv_M Back     alignment and structure
>1eak_A 72 kDa type IV collagenase; hydrolase-hydrolase inhibitor complex, hydrolyse, matrix metalloproteinase, gelatinase A, hydrolase- hydrolase inhib complex; 2.66A {Homo sapiens} SCOP: a.20.1.2 d.92.1.11 g.14.1.2 g.14.1.2 g.14.1.2 PDB: 1ks0_A 1cxw_A Back     alignment and structure
>1c7k_A NCNP, zinc endoprotease; alpha and beta protein, metalloproteinase, hydrolase; 1.00A {Streptomyces caespitosus} SCOP: d.92.1.1 PDB: 1kuh_A Back     alignment and structure
>1l6j_A Matrix metalloproteinase-9; twisted beta sheet flanked by helices, hydrolase; 2.50A {Homo sapiens} SCOP: a.20.1.2 d.92.1.11 g.14.1.2 g.14.1.2 g.14.1.2 Back     alignment and structure
>1ck7_A Protein (gelatinase A); hydrolase (metalloprotease), FULL-length, metalloproteinase; 2.80A {Homo sapiens} SCOP: a.20.1.2 b.66.1.1 d.92.1.11 g.14.1.2 g.14.1.2 g.14.1.2 PDB: 1gxd_A Back     alignment and structure
>2cki_A Ulilysin; metalloprotease, hydrolase; HET: ARG; 1.7A {Methanosarcina acetivorans} PDB: 2j83_A* 3lum_A* 3lun_A* Back     alignment and structure
>3p24_A BFT-3; metzincins, metalloendopeptidase, hydrolase; HET: PG4; 1.80A {Bacteroides fragilis} Back     alignment and structure
>2w15_A Zinc metalloproteinase BAP1; hydrolase inhibitor complex, metal-binding, zinc-depending, metalloprotease, metalloproteinase/inhibitor complex; HET: WR2; 1.05A {Bothrops asper} PDB: 2w12_A* 2w13_A* 2w14_A* 1nd1_A 3gbo_A Back     alignment and structure
>1bud_A Protein (acutolysin A); metalloproteinase, snake venom, MMP, toxin; 1.90A {Deinagkistrodon acutus} SCOP: d.92.1.9 PDB: 1bsw_A Back     alignment and structure
>1qua_A Acutolysin-C, hemorrhagin III; metalloprotease, hemorrhagic toxin, snake venom proteinase; 2.20A {Deinagkistrodon acutus} SCOP: d.92.1.9 Back     alignment and structure
>4axq_A Archaemetzincin; metalloprotease, protease, hydrolase, metal-bindi; 1.40A {Archaeoglobus fulgidus} PDB: 2xhq_A 3zvs_A 4a3w_A* Back     alignment and structure
>1kuf_A Atrolysin E, metalloproteinase; alpha/beta protein, hydrolase; 1.35A {Protobothrops mucrosquamatus} SCOP: d.92.1.9 PDB: 1kui_A 1kuk_A 1kug_A 1wni_A Back     alignment and structure
>1atl_A Atrolysin C; metalloendopeptidase, hydrolase-hydrolase inhibitor complex; HET: 0QI; 1.80A {Crotalus atrox} SCOP: d.92.1.9 PDB: 1htd_A 1dth_A* 3aig_A* 2aig_P* 4aig_A* 1iag_A Back     alignment and structure
>1yp1_A FII; FII hydrolase; 1.90A {Deinagkistrodon acutus} Back     alignment and structure
>3b8z_A Protein adamts-5; alpha/beta, hydrolase; HET: 294; 1.40A {Homo sapiens} PDB: 3hyg_A* 3hy9_A* 3hy7_A* 3ljt_A* Back     alignment and structure
>2ddf_A ADAM 17; hydrolase; HET: INN CIT; 1.70A {Homo sapiens} PDB: 2fv5_A* 3l0v_A* 3kme_A* 3l0t_A* 3kmc_A* 3le9_A* 3lea_A* 3lgp_A* 3o64_A* 3ewj_A* 3edz_A* 3e8r_A* 2fv9_A* 1zxc_A* 2oi0_A* 3b92_A* 2a8h_A* 1bkc_A* 3cki_A 1bkc_I* ... Back     alignment and structure
>2v4b_A Adamts-1; zymogen, protease, hydrolase, metalloprotease, heparin-binding, metalloproteinase, metzincin, glycoprotein metal-binding; 2.00A {Homo sapiens} PDB: 2jih_A 3q2g_A* 3q2h_A* Back     alignment and structure
>1r55_A ADAM 33; metalloprotease, inhibitor, asthma, hydrolase; HET: NAG MAN 097; 1.58A {Homo sapiens} SCOP: d.92.1.9 PDB: 1r54_A* Back     alignment and structure
>4dd8_A Disintegrin and metalloproteinase domain-containi 8; batimastat, inflammation, alpha/beta motif, metalloproteinas allergic asthma, tumorigenesis; HET: BAT; 2.10A {Homo sapiens} Back     alignment and structure
>2rjp_A Adamts-4; metalloprotease domain, aggrecanase, cleavage on PAIR of basic residues, extracellular matrix, glycoprotein, hydrolase, metal-binding; HET: 886; 2.80A {Homo sapiens} PDB: 3b2z_A Back     alignment and structure
>2rjq_A Adamts-5; metalloprotease domain, aggrecanase, cleavage on PAIR of BAS residues, extracellular matrix, glycoprotein, hydrolase, ME binding; HET: NAG BAT; 2.60A {Homo sapiens} Back     alignment and structure
>2i47_A ADAM 17; TACE-inhibitor complex, hydrolase; HET: INN KGY; 1.90A {Homo sapiens} SCOP: d.92.1.10 PDB: 3g42_A* Back     alignment and structure
>3lmc_A Peptidase, zinc-dependent; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, MUR16; 2.00A {Methanocorpusculum labreanum} Back     alignment and structure
>2x7m_A Archaemetzincin; metalloprotease, protease, hydrolase, metal-bindi; 1.50A {Methanopyrus kandleri} Back     alignment and structure
>2ero_A VAP-1, vascular apoptosis-inducing protein 1; metalloprotease, disintegrin, calcium-binding, ADAM, SVMP, M protein, toxin; HET: NAG; 2.50A {Crotalus atrox} PDB: 2erp_A* 2erq_A* Back     alignment and structure
>2e3x_A Coagulation factor X-activating enzyme light CHAI; disintegrin, metalloproteinase, C-type lectin, hydrolase, BL clotting, toxin; HET: NAG MAN GM6; 2.91A {Daboia russellii siamensis} Back     alignment and structure
>2dw0_A Catrocollastatin; apoptotic toxin, SVMP, metalloproteinase, apoptosis, toxin; HET: NAG BMA MAN GM6; 2.15A {Crotalus atrox} PDB: 2dw1_A* 2dw2_A* 3dsl_A* 3hdb_A* Back     alignment and structure
>3k7n_A K-like; SVMP, hydrolase; HET: NAG FUC FUL; 2.30A {Naja atra} Back     alignment and structure
>3k7l_A Atragin; SVMP, metalloprotease, hydrolase; HET: NAG; 2.50A {Naja atra} Back     alignment and structure
>1lml_A Leishmanolysin; metalloprotease, glycoprotein; 1.86A {Leishmania major} SCOP: d.92.1.3 Back     alignment and structure
>3g5c_A ADAM 22; alpha/beta fold, cross-linked domain, cell adhesion, cleavag of basic residues, EGF-like domain, glycoprotein, membrane, phosphoprotein; HET: NAG; 2.36A {Homo sapiens} Back     alignment and structure
>3ujz_A Metalloprotease STCE; mucin-type glycoprotein, hydrolase; 2.50A {Escherichia coli} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 242
d1asta_200 d.92.1.8 (A:) Astacin {European fresh water crayfi 4e-50
>d1asta_ d.92.1.8 (A:) Astacin {European fresh water crayfish (Astacus astacus) [TaxId: 6715]} Length = 200 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Zincin-like
superfamily: Metalloproteases ("zincins"), catalytic domain
family: Astacin
domain: Astacin
species: European fresh water crayfish (Astacus astacus) [TaxId: 6715]

 Score =  160 bits (406), Expect = 4e-50
 Identities = 52/198 (26%), Positives = 84/198 (42%), Gaps = 8/198 (4%)

Query: 21  PAKLWKDGLIYYEIDKNFSVDRKRFIVKALNNIMTFSCVRFRRRTHNQTPYIVYKESPNG 80
              LW  G+I Y        D+   I+  +  +   +C+RF  RT       ++    +G
Sbjct: 6   DEYLWSGGVIPYTFAGVSGADQSA-ILSGMQELEEKTCIRFVPRTTESDYVEIFT---SG 61

Query: 81  KSCSSNVGFTGKKVSYVNLGKNCFVMGTVQHETLHALGFWHEQARPDRDRFVDIHYELIK 140
             C S VG              C   GT+ HE +HA+GF+HE  R DRD +V I+Y+ + 
Sbjct: 62  SGCWSYVGRISGAQQVSLQANGCVYHGTIIHELMHAIGFYHEHTRMDRDNYVTINYQNVD 121

Query: 141 KGSEINFKKRNFKEATTLDLPYDFGSIMHYSRFAFSRDSKS-PTITPKKTLNVQADKMGQ 199
                NF    +     +   Y + SIMHY +++FS       TI P +   +       
Sbjct: 122 PSMTSNFDIDTYSR--YVGEDYQYYSIMHYGKYSFSIQWGVLETIVPLQN-GIDLTDPYD 178

Query: 200 RINISKMDIAKLNTLYKC 217
           + ++ + D  ++N LY  
Sbjct: 179 KAHMLQTDANQINNLYTN 196

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query242
d1asta_200 Astacin {European fresh water crayfish (Astacus as 100.0
d1hy7a_168 Stromelysin-1 (MMP-3) {Human (Homo sapiens), fibro 99.81
d1qiba_161 Gelatinase A {Human (Homo sapiens) [TaxId: 9606]} 99.79
d1bqqm_174 Membrane-type matrix metalloproteinase (CDMT1-MMP) 99.77
d1mmqa_166 Matrilysin (MMP-7) {Human (Homo sapiens) [TaxId: 9 99.76
d1hfca_157 Fibroblast collagenase (MMP-1) {Human (Homo sapien 99.76
d1xuca1169 Collagenase-3 (MMP-13) {Human (Homo sapiens) [TaxI 99.76
d1y93a1158 Macrophage elastase (MMP-12) {Human (Homo sapiens) 99.74
d1hv5a_162 Stromelysin-3 (MMP-11) {Mouse (Mus musculus) [TaxI 99.74
d1i76a_163 Neutrophil collagenase (MMP-8) {Human (Homo sapien 99.73
d1kapp2246 Metalloprotease {Pseudomonas aeruginosa [TaxId: 28 99.73
d2ovxa1159 Gelatinase B (MMP-9) {Human (Homo sapiens) [TaxId: 99.71
d1k7ia2241 Metalloprotease {Erwinia chrysanthemi [TaxId: 556] 99.71
d1rm8a_169 Matrix metalloproteinase-16 (MMP-16) {Human (Homo 99.69
d1g9ka2242 Metalloprotease {Pseudomonas sp., tac ii 18 [TaxId 99.69
d1sata2243 Metalloprotease {Serratia marcescens [TaxId: 615]} 99.64
d1c7ka_132 Zinc protease {Streptomyces caespitosus [TaxId: 53 98.09
d1bswa_197 Snake venom metalloprotease {Five-pace snake (Agki 95.46
d1quaa_197 Snake venom metalloprotease {Chinese five-pace sna 95.28
d2i47a1254 TNF-alpha converting enzyme, TACE, catalytic domai 95.17
d1kufa_201 Snake venom metalloprotease {Taiwan habu (Trimeres 95.16
d1r55a_203 ADAM33 {Human (Homo sapiens) [TaxId: 9606]} 95.13
d1atla_200 Snake venom metalloprotease {Western diamonback ra 95.1
d1nd1a_202 Snake venom metalloprotease {Terciopelo (Bothrops 95.04
d1lmla_ 475 Leishmanolysin {Leishmania major [TaxId: 5664]} 88.37
>d1asta_ d.92.1.8 (A:) Astacin {European fresh water crayfish (Astacus astacus) [TaxId: 6715]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Zincin-like
superfamily: Metalloproteases ("zincins"), catalytic domain
family: Astacin
domain: Astacin
species: European fresh water crayfish (Astacus astacus) [TaxId: 6715]

Probab=100.00  E-value=1.1e-62  Score=409.69  Aligned_cols=192  Identities=30%  Similarity=0.530  Sum_probs=173.7

Q ss_pred             ccccCCCCCCCCCeEEEEECCCCCHHHHHHHHHHHHHHhccccEEEEecCCCCCCeEEEEccCCCCCCCCccCCCCCccc
Q psy1890          16 NLAKTPAKLWKDGLIYYEIDKNFSVDRKRFIVKALNNIMTFSCVRFRRRTHNQTPYIVYKESPNGKSCSSNVGFTGKKVS   95 (242)
Q Consensus        16 ~~~~~~~~~Wp~~~I~Y~~~~~~~~~~~~~I~~A~~~w~~~tci~F~~~~~~~~~~I~i~~~~~~~gc~S~vG~~~g~~q   95 (242)
                      .|+..+..+||+++|||.|++ ++...++.|++||++|++.|||+|+|++. +.++|.|...  +.||||+||+.++. |
T Consensus         1 ~ai~~~~~~Wp~~~VpY~~~~-~~~~~~~~I~~A~~~~~~~TcirF~~r~~-~~~~i~~~~~--~~gC~S~vG~~~g~-q   75 (200)
T d1asta_           1 AAILGDEYLWSGGVIPYTFAG-VSGADQSAILSGMQELEEKTCIRFVPRTT-ESDYVEIFTS--GSGCWSYVGRISGA-Q   75 (200)
T ss_dssp             CEESCGGGSCGGGEEEEEEES-CCHHHHHHHHHHHHHHHHHSSCEEEECSS-CSSEEEEESS--SSSEEECSSCCSSE-E
T ss_pred             CCccCccccCCCCEEEEEECC-CCHHHHHHHHHHHHHHHhCcCceeeeCCC-CCCcEEEecC--CCcccccCCeECCc-c
Confidence            367788889999999999975 78899999999999999999999999985 8889887655  68999999999998 9


Q ss_pred             eEEe-CCCCcccchhHHHHHHHhcccccccCCCCCceEEEeeecccccccccccccCccccccCCCcCCCCcccccCCCc
Q psy1890          96 YVNL-GKNCFVMGTVQHETLHALGFWHEQARPDRDRFVDIHYELIKKGSEINFKKRNFKEATTLDLPYDFGSIMHYSRFA  174 (242)
Q Consensus        96 ~i~l-~~~c~~~~~i~HEigHALGl~HEh~rpDRD~yv~i~~~ni~~~~~~nf~k~~~~~~~~~g~~yD~~SIMhY~~~~  174 (242)
                      .++| +.+|...++|+|||||||||.|||+|||||+||.|+|+||.++...||++++..  ..+|+||||+|||||++.+
T Consensus        76 ~~~l~~~~c~~~g~i~HEl~HaLGf~HEh~RpDRD~yV~i~~~ni~~~~~~nF~~~~~~--~~~g~~YDy~SIMHY~~~a  153 (200)
T d1asta_          76 QVSLQANGCVYHGTIIHELMHAIGFYHEHTRMDRDNYVTINYQNVDPSMTSNFDIDTYS--RYVGEDYQYYSIMHYGKYS  153 (200)
T ss_dssp             EEEECTTTTCSHHHHHHHHHHHHTBCCGGGSTTGGGTEEECGGGBCTTSGGGGCCCSSE--ECCSCCCCTTCTTCCCTTT
T ss_pred             eEEeCCCCcCccCccHHHHHHHhcccchhhcccccceEEEeeeccCcchhhhhhhcccc--cccccccCccchhcccccc
Confidence            9999 567999999999999999999999999999999999999999999999997644  4478999999999999999


Q ss_pred             cccCCC-CCeeeeccCCCcccc--ccCCcCcccHHHHHHHHhHCCC
Q psy1890         175 FSRDSK-SPTITPKKTLNVQAD--KMGQRINISKMDIAKLNTLYKC  217 (242)
Q Consensus       175 f~~~g~-~~ti~~~~~~~~~~~--~ig~r~~lS~~Di~~in~lY~C  217 (242)
                      |++++. .+||+|+++   ...  .+|||.+||+.|+++||+||+|
T Consensus       154 fs~n~~~~~Ti~~~~~---~~~~~~~gqr~~lS~~Di~~in~~Y~c  196 (200)
T d1asta_         154 FSIQWGVLETIVPLQN---GIDLTDPYDKAHMLQTDANQINNLYTN  196 (200)
T ss_dssp             TBTTTTTSCSEEESST---TCCCCCGGGCSSCCHHHHHHHHHHTHH
T ss_pred             cccCCCCCCcceECCC---CccccCcccccCCCHHHHHHHHHHhCC
Confidence            999865 589999986   332  4899999999999999999987
>d1hy7a_ d.92.1.11 (A:) Stromelysin-1 (MMP-3) {Human (Homo sapiens), fibroblast [TaxId: 9606]} Back     information, alignment and structure
>d1qiba_ d.92.1.11 (A:) Gelatinase A {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1bqqm_ d.92.1.11 (M:) Membrane-type matrix metalloproteinase (CDMT1-MMP) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1mmqa_ d.92.1.11 (A:) Matrilysin (MMP-7) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1hfca_ d.92.1.11 (A:) Fibroblast collagenase (MMP-1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1xuca1 d.92.1.11 (A:104-272) Collagenase-3 (MMP-13) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1y93a1 d.92.1.11 (A:106-263) Macrophage elastase (MMP-12) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1hv5a_ d.92.1.11 (A:) Stromelysin-3 (MMP-11) {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1i76a_ d.92.1.11 (A:) Neutrophil collagenase (MMP-8) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1kapp2 d.92.1.6 (P:1-246) Metalloprotease {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d2ovxa1 d.92.1.11 (A:110-443) Gelatinase B (MMP-9) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1k7ia2 d.92.1.6 (A:18-258) Metalloprotease {Erwinia chrysanthemi [TaxId: 556]} Back     information, alignment and structure
>d1rm8a_ d.92.1.11 (A:) Matrix metalloproteinase-16 (MMP-16) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1g9ka2 d.92.1.6 (A:3-244) Metalloprotease {Pseudomonas sp., tac ii 18 [TaxId: 306]} Back     information, alignment and structure
>d1sata2 d.92.1.6 (A:4-246) Metalloprotease {Serratia marcescens [TaxId: 615]} Back     information, alignment and structure
>d1c7ka_ d.92.1.1 (A:) Zinc protease {Streptomyces caespitosus [TaxId: 53502]} Back     information, alignment and structure
>d1bswa_ d.92.1.9 (A:) Snake venom metalloprotease {Five-pace snake (Agkistrodon acutus), acutolysin A [TaxId: 36307]} Back     information, alignment and structure
>d1quaa_ d.92.1.9 (A:) Snake venom metalloprotease {Chinese five-pace snake (Agkistrodon acutus), acutolysin C [TaxId: 36307]} Back     information, alignment and structure
>d2i47a1 d.92.1.10 (A:220-473) TNF-alpha converting enzyme, TACE, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1kufa_ d.92.1.9 (A:) Snake venom metalloprotease {Taiwan habu (Trimeresurus mucrosquamatus), atrolysin E [TaxId: 103944]} Back     information, alignment and structure
>d1r55a_ d.92.1.9 (A:) ADAM33 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1atla_ d.92.1.9 (A:) Snake venom metalloprotease {Western diamonback rattlesnake (Crotalus atrox), atrolysin C [TaxId: 8730]} Back     information, alignment and structure
>d1nd1a_ d.92.1.9 (A:) Snake venom metalloprotease {Terciopelo (Bothrops asper), bap1 [TaxId: 8722]} Back     information, alignment and structure
>d1lmla_ d.92.1.3 (A:) Leishmanolysin {Leishmania major [TaxId: 5664]} Back     information, alignment and structure