Psyllid ID: psy1897

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470---

FYKNPNVLDLKTNKPYASKHRHILNNIEEFWFYVQSEVRKLKKSNAVDVDKILDLTSQFKRSLMTDMEELGTLAGGDTLAERQNRRLGELVQARLRHIQNPRDCKTARKVSCQINWACGFGCQLHHVTYCLIIAYATNRTLVLDSTGWNYHSGGWEEMFEPLSQTCRTATEGSVIYWPDHKPDKQIIKLASQTYSLSGPGFIPRAVPQDIAQELIHGEPIVWWVGQIVKYIFKPNAKVRAMLSHHAQQIGFSHPVVGVHIRRTDKGSEAAPHPIHEYMRHVEEYYAQLSLQVNVTERKVYVATDEKGVIMEIRQKYPAYTILGDASTVEAASSDRRYSTAGLLGIITDLYFLSHSDYLVCTFSSQICRIAYELLNTDHRDASLNFKSLDDIWFFAGQRDNIQLAVLDHTPQTADQIELRVGDEVKPAGNHWDGFSRGTNLRTNRHGLYPSFKVISRVETYKFPTYPEVKLPQR

cccccccccccccHHHHHHHHHHHHcHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHccccccccccEEEEEccccccHHHHHHHHHHHHHHHHHcccEEEEEcccccccccccccccccccccccccccccccccccccccccEEEcccccccccccccccccccHHHHHHHHccccHHHHHHHHHHHHccccHHHHHHHHHHHHHHcccccEEEEEEEccccccccccccHHHHHHHHHHHHHHHHHcccccccEEEEEcccHHHHHHHHHHccccEEEcccHHHHHHcccccccHHHHHHHHHHHHHcccccEEEEccccHHHHHHHHHHHccccccccccEEccccccccccccccHHHHcccccccccccccccccEEEEcccccccEEEEEEcccccEEEEccccEEEcccccccccccccccccc

cccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHcccccHHHccEEEEEcccccccHHHHHHHHHHHHHHHccccEEEEEccccccccccHHHHEcccccccccccccccccccccccccEEEEEEcccccccccccccccccHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccEEEEEEEccccccccccccHHHHHHHHHHHHHHHHHcccccEEEEEEEcccHHHHHHHHHHcccEEEEEcccHHHHccccccccHHHHHHHHHHHHHHHHccEEEEEcccHHHHHHHHHHHHccccccccEEEccccEEEcccccccEEEEEcccccccccEEcccccEEEEccccccccccccccccccEEEcccEEEEccEEEcccccccccccccc

fyknpnvldlktnkpyaskHRHILNNIEEFWFYVQSEVRKLkksnavdvdKILDLTSQFKRSLMTDMEelgtlaggdtlAERQNRRLGELVQARLRHiqnprdcktarkVSCQinwacgfgcqlhHVTYCLIIAYATNRtlvldstgwnyhsggweemfeplsqtcrtategsviywpdhkpdkQIIKLASQtyslsgpgfipravpQDIAQELIHGEPIVWWVGQIVKYIFKPNAKVRAMLSHHAqqigfshpvvgvhirrtdkgseaaphpiHEYMRHVEEYYAQLSLQVNVTERKVYVATDEKGVIMEIRQkypaytilgdastveaassdrrystAGLLGIITDLYFLSHSDYLVCTFSSQICRIAYELLNtdhrdaslnfkslddiwffagqrdniqlavldhtpqtadqielrvgdevkpagnhwdgfsrgtnlrtnrhglypsfkVISRvetykfptypevklpqr

fyknpnvldlktnkpyasKHRHILNNIEEFWFYVQSEVRKlkksnavdvdkilDLTSQFKRSLMTDMEELGtlaggdtlaerQNRRLGELVQArlrhiqnprdcktARKVSCQINWACGFGCQLHHVTYCLIIAYATNRTLVLDSTGWNYHSGGWEEMFEPLSQTCRTATEGSVIYWPDHKPDKQIIKLASQTYSLSGPGFIPRAVPQDIAQELIHGEPIVWWVGQIVKYIFKPNAKVRAMLSHHAQQIGFSHPVVGVHIRRTDKGSEAAPHPIHEYMRHVEEYYAQLSLQVNVTERKVYvatdekgviMEIRQKYPAYTILGDASTVEAASSDRRYSTAGLLGIITDLYFLSHSDYLVCTFSSQICRIAYELLNTDHRDASLNFKSLDDIWFFAGQRDNIQLAVLDHTPQTADQIELRVGDEVKPAGNHWdgfsrgtnlrtnrhglypsfkvisrvetykfptypevklpqr

***************YASKHRHILNNIEEFWFYVQSEVRKLKKSNAVDVDKILDLTSQFKRSLMTD***LGTLA***********RLGELVQARLRHIQNPRDCKTARKVSCQINWACGFGCQLHHVTYCLIIAYATNRTLVLDSTGWNYHSGGWEEMFEPLSQTCRTATEGSVIYWPDHKPDKQIIKLASQTYSLSGPGFIPRAVPQDIAQELIHGEPIVWWVGQIVKYIFKPNAKVRAMLSHHAQQIGFSHPVVGVHIRRTD******PHPIHEYMRHVEEYYAQLSLQVNVTERKVYVATDEKGVIMEIRQKYPAYTILGDASTVEAASSDRRYSTAGLLGIITDLYFLSHSDYLVCTFSSQICRIAYELLNTDHRDASLNFKSLDDIWFFAGQRDNIQLAVLDHTPQTADQIELRVGDEVKPAGNHWDGFSRGTNLRTNRHGLYPSFKVISRVETYKFPTY********

*********************HILNNIEEFWFYVQS******************LTSQFKRSLMTDMEELGTLAGGDTLAERQNRRLGELVQA**********CKTARKVSCQINWACGFGCQLHHVTYCLIIAYATNRTLVLDSTGWNYHSGGWEEMFEPLSQTCRTATEGSVIYWPDHKPDKQIIKLASQTYSLSGPGFIPRAVPQDIAQELIHGEPIVWWVGQIVKYIFKPNAKVRAMLSHHAQQIGFSHPVVGVHIRRTDKGSEAAPHPIHEYMRHVEEYYAQLSLQVNVTERKVYVATDEKGVIMEIRQKYPAYTILGDAS*************AGLLGIITDLYFLSHSDYLVCTFSSQICRIAYELLNTDHRDASLNFKSLDDIWFFAGQRDNIQLAV**********IELRVGDEVKPAGNHWDGFSRGTNLRTNRHGLYPSFKVISRVETYKFPTY********

FYK*PNVLDLKTNKPYASKHRHILNNIEEFWFYVQSEVRKLKKSNAVDVDKILDLTSQFKRSLMTDMEELGTLAGGDTLAERQNRRLGELVQARLRHIQNPRDCKTARKVSCQINWACGFGCQLHHVTYCLIIAYATNRTLVLDSTGWNYHSGGWEEMFEPLSQTCRTATEGSVIYWPDHKPDKQIIKLASQTYSLSGPGFIPRAVPQDIAQELIHGEPIVWWVGQIVKYIFKPNAKVRAMLSHHAQQIGFSHPVVGVHIRRTDKGSEAAPHPIHEYMRHVEEYYAQLSLQVNVTERKVYVATDEKGVIMEIRQKYPAYTILGDASTVEAASSDRRYSTAGLLGIITDLYFLSHSDYLVCTFSSQICRIAYELLNTDHRDASLNFKSLDDIWFFAGQRDNIQLAVLDHTPQTADQIELRVGDEVKPAGNHWDGFSRGTNLRTNRHGLYPSFKVISRVETYKFPTYPEVK****

ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		473	2.2.26 [Sep-21-2011]
Q9VYV5		619	Alpha-(1,6)-fucosyltransf	yes	N/A	0.972	0.743	0.454	1e-126
Q6EV77		575	Alpha-(1,6)-fucosyltransf	yes	N/A	0.947	0.779	0.461	1e-125
Q9BYC5		575	Alpha-(1,6)-fucosyltransf	yes	N/A	0.947	0.779	0.461	1e-125
Q659X0		575	Alpha-(1,6)-fucosyltransf	yes	N/A	0.949	0.780	0.460	1e-124
Q6NVP8		578	Alpha-(1,6)-fucosyltransf	yes	N/A	0.947	0.775	0.459	1e-124
Q5NVB3		574	Alpha-(1,6)-fucosyltransf	yes	N/A	0.945	0.778	0.464	1e-124
Q6EV76		575	Alpha-(1,6)-fucosyltransf	yes	N/A	0.949	0.780	0.458	1e-123
Q9WTS2		575	Alpha-(1,6)-fucosyltransf	yes	N/A	0.949	0.780	0.458	1e-123
Q9N0W2		575	Alpha-(1,6)-fucosyltransf	yes	N/A	0.949	0.780	0.454	1e-122
P79282		575	Alpha-(1,6)-fucosyltransf	yes	N/A	0.947	0.779	0.448	1e-121

>sp\|Q9VYV5\|FUT8_DROME Alpha-(1,6)-fucosyltransferase OS=Drosophila melanogaster GN=FucT6 PE=1 SV=1	Back alignment and function desciption

 Score =  453 bits (1165), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 215/473 (45%), Positives = 308/473 (65%), Gaps = 13/473 (2%)

Query: 5   PNVLDLKTNKPYASKHRHILNNIEEFWFYVQSEVRKLKKSNAV---------DVDKILDL 55
           P+  + + +  Y    R I  NI E W +  SE+ K++K+ A           ++++L  
Sbjct: 145 PDHGEFEPSLEYEFTRRRIQTNIGEIWNFFSSELGKVRKAVAAGHASADLEESINQVLLQ 204

Query: 56  TSQFKRSLMTDMEELGTLAGGDTLAERQNRRLGELVQARLRHIQNPRDCKTARKVSCQIN 115
            ++ KRSL++DME +    G +    ++ R L +LVQ RL H+QNP DC+ ARK+ C++N
Sbjct: 205 GAEHKRSLLSDMERMRQSDGYEAWRHKEARDLSDLVQRRLHHLQNPSDCQNARKLVCKLN 264

Query: 116 WACGFGCQLHHVTYCLIIAYATNRTLVLDSTGWNYHSGGWEEMFEPLSQTCRTATEGSVI 175
             CG+GCQLHHV YC I+AYAT RTL+L S GW YH GGWEE+F+P+S +C  A   +  
Sbjct: 265 KGCGYGCQLHHVVYCFIVAYATERTLILKSRGWRYHKGGWEEVFQPVSNSCHDAGTANTY 324

Query: 176 YWPDHKPDKQIIKLASQTYSLSGPGFIPRAVPQDIAQEL--IHGEPIVWWVGQIVKYIFK 233
            WP  KP+ Q++ L      +  P ++P AVP+D+A  L  +HG+PIVWWVGQ +KY+ +
Sbjct: 325 NWPG-KPNTQVLVLPIIDSLMPRPPYLPLAVPEDLAPRLKRLHGDPIVWWVGQFLKYLLR 383

Query: 234 PNAKVRAMLSHHAQQIGFSHPVVGVHIRRTDK-GSEAAPHPIHEYMRHVEEYYAQLSLQV 292
           P    R  L+   + +G+  P+VGVH+RRTDK G+EAA H + EYM +VE+YY  L +  
Sbjct: 384 PQPTTRDFLTSGMRNLGWERPIVGVHVRRTDKVGTEAACHSVEEYMTYVEDYYRTLEVNG 443

Query: 293 NVTERKVYVATDEKGVIMEIRQKYPAYTILGDASTVEAASSDRRYSTAGLLGIITDLYFL 352
           +   R++++A+D+  VI E R+KYP Y I+GD      AS   RY+   L GII D++ L
Sbjct: 444 STVARRIFLASDDAQVIEEARRKYPQYQIIGDPEVARMASVSTRYTDTALNGIILDIHLL 503

Query: 353 SHSDYLVCTFSSQICRIAYELLNTDHRDASLNFKSLDDIWFFAGQRDNIQLAVLDHTPQT 412
           S SD+LVCTFSSQ+CR+AYE++ T + DA+  FKSLDDI+++ GQ  + +  V+ H P+T
Sbjct: 504 SMSDHLVCTFSSQVCRVAYEIMQTMYPDAAHRFKSLDDIYYYGGQNAHNRRVVIAHKPRT 563

Query: 413 ADQIELRVGDEVKPAGNHWDGFSRGTNLRTNRHGLYPSFKVISRVETYKFPTY 465
            + ++LRVGD V  AGNHWDG S+G N RTN+ GL+PSFKV  +V+T K P Y
Sbjct: 564 HEDLQLRVGDLVSVAGNHWDGNSKGKNTRTNQGGLFPSFKVEEKVDTAKLPLY 616

Catalyzes the addition of fucose in alpha 1-6 linkage to the first GlcNAc residue, next to the peptide chains in N-glycans.
Drosophila melanogaster (taxid: 7227)
EC: 2EC: .EC: 4EC: .EC: 1EC: .EC: 6EC: 8

>sp\|Q6EV77\|FUT8_PANTR Alpha-(1,6)-fucosyltransferase OS=Pan troglodytes GN=FUT8 PE=2 SV=1	Back alignment and function description

>sp\|Q9BYC5\|FUT8_HUMAN Alpha-(1,6)-fucosyltransferase OS=Homo sapiens GN=FUT8 PE=1 SV=2	Back alignment and function description

>sp\|Q659X0\|FUT8_CANFA Alpha-(1,6)-fucosyltransferase OS=Canis familiaris GN=FUT8 PE=2 SV=1	Back alignment and function description

>sp\|Q6NVP8\|FUT8_XENTR Alpha-(1,6)-fucosyltransferase OS=Xenopus tropicalis GN=fut8 PE=2 SV=1	Back alignment and function description

>sp\|Q5NVB3\|FUT8_PONAB Alpha-(1,6)-fucosyltransferase OS=Pongo abelii GN=FUT8 PE=2 SV=1	Back alignment and function description

>sp\|Q6EV76\|FUT8_RAT Alpha-(1,6)-fucosyltransferase OS=Rattus norvegicus GN=Fut8 PE=2 SV=1	Back alignment and function description

>sp\|Q9WTS2\|FUT8_MOUSE Alpha-(1,6)-fucosyltransferase OS=Mus musculus GN=Fut8 PE=2 SV=2	Back alignment and function description

>sp\|Q9N0W2\|FUT8_BOVIN Alpha-(1,6)-fucosyltransferase OS=Bos taurus GN=FUT8 PE=2 SV=1	Back alignment and function description

>sp\|P79282\|FUT8_PIG Alpha-(1,6)-fucosyltransferase OS=Sus scrofa GN=FUT8 PE=1 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		473
195133212		627	GI16320 [Drosophila mojavensis] gi\|19390	0.955	0.720	0.473	1e-128
328709459		567	PREDICTED: alpha-(1,6)-fucosyltransferas	0.959	0.800	0.471	1e-126
194764220		618	GF21438 [Drosophila ananassae] gi\|190619	0.955	0.731	0.468	1e-126
195432518		644	GK19791 [Drosophila willistoni] gi\|19416	0.955	0.701	0.469	1e-125
195399057		625	GJ15660 [Drosophila virilis] gi\|19415056	0.978	0.740	0.464	1e-125
312380130		595	hypothetical protein AND_07861 [Anophele	0.957	0.761	0.465	1e-125
125983146		625	FucT6 [Drosophila pseudoobscura pseudoob	0.978	0.740	0.461	1e-125
195355262		619	GM13053 [Drosophila sechellia] gi\|194129	0.972	0.743	0.454	1e-125
18859827		619	alpha1,6-fucosyltransferase [Drosophila	0.972	0.743	0.454	1e-125
390342486		793	PREDICTED: alpha-(1,6)-fucosyltransferas	0.959	0.572	0.454	1e-124

>gi\|195133212\|ref\|XP_002011033.1\| GI16320 [Drosophila mojavensis] gi\|193907008\|gb\|EDW05875.1\| GI16320 [Drosophila mojavensis]	Back alignment and taxonomy information

 Score =  464 bits (1193), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 219/463 (47%), Positives = 308/463 (66%), Gaps = 11/463 (2%)

Query: 16  YASKHRHILNNIEEFWFYVQSEVRKLKKSNAV-------DVDKILDLTSQFKRSLMTDME 68
           Y    R I  NI E W Y  SE+ KL+K+           + ++L   +  KRSL++DME
Sbjct: 166 YELTRRRIQTNIAEIWNYFSSELGKLRKAVGPGNSELEESIQQVLLQGADHKRSLLSDME 225

Query: 69  ELGTLAGGDTLAERQNRRLGELVQARLRHIQNPRDCKTARKVSCQINWACGFGCQLHHVT 128
           +L  + G +   +++ + L +LVQ RL H+QNP DC+ ARK+ C++N  CG+GCQLHHV 
Sbjct: 226 QLRRVDGYEAWRQQEAKDLSDLVQRRLHHLQNPSDCQNARKLVCKLNKGCGYGCQLHHVV 285

Query: 129 YCLIIAYATNRTLVLDSTGWNYHSGGWEEMFEPLSQTCRTATEGSVIYWPDHKPDKQIIK 188
           YC I+AYAT RTL+L S GW YH GGWEE+F P+S  C+ A       WP  KP+ Q++ 
Sbjct: 286 YCFIVAYATERTLILKSRGWRYHKGGWEEVFRPVSDNCQDAGTAYAYNWPG-KPNTQVLV 344

Query: 189 LASQTYSLSGPGFIPRAVPQDIAQEL--IHGEPIVWWVGQIVKYIFKPNAKVRAMLSHHA 246
           L      +  P ++P AVP+D+A  L  +HG+PIVWWVGQ +KY+ +P  + R  L+   
Sbjct: 345 LPIIDSLMPRPPYLPLAVPEDLAPRLKRLHGDPIVWWVGQFLKYLLRPQTETRDFLNSGM 404

Query: 247 QQIGFSHPVVGVHIRRTDK-GSEAAPHPIHEYMRHVEEYYAQLSLQVNVTERKVYVATDE 305
           +++G+  P+VGVH+RRTDK G+EAA H I EYM HVE+YY  L +  +   R++++A+D+
Sbjct: 405 RKLGWERPIVGVHVRRTDKVGTEAAFHGIDEYMTHVEDYYRTLEINGSSVVRRIFLASDD 464

Query: 306 KGVIMEIRQKYPAYTILGDASTVEAASSDRRYSTAGLLGIITDLYFLSHSDYLVCTFSSQ 365
             VI+E R+KYP Y I+GD      A+   RY+   L GII D++ LS SDYLVCTFSSQ
Sbjct: 465 ARVIVEARKKYPQYQIVGDPEVARMAAVSTRYTDTALNGIILDIHLLSMSDYLVCTFSSQ 524

Query: 366 ICRIAYELLNTDHRDASLNFKSLDDIWFFAGQRDNIQLAVLDHTPQTADQIELRVGDEVK 425
           +CR+AYE++ T + DA+  FKSLDDI+++ GQ  + + AV+ H P++ + ++L+VGD V 
Sbjct: 525 VCRVAYEIMQTMYPDAAYRFKSLDDIYYYGGQNPHNRRAVIPHKPRSHEDLQLKVGDLVS 584

Query: 426 PAGNHWDGFSRGTNLRTNRHGLYPSFKVISRVETYKFPTYPEV 468
            AGNHWDG S+G N RTN+ GL+PSFKV+ +VET K P YP V
Sbjct: 585 VAGNHWDGNSKGKNTRTNQGGLFPSFKVVDKVETAKLPVYPGV 627

Source: Drosophila mojavensis

Species: Drosophila mojavensis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi\|328709459\|ref\|XP_001947095.2\| PREDICTED: alpha-(1,6)-fucosyltransferase-like [Acyrthosiphon pisum] gi\|328709468\|ref\|XP_001951687.2\| PREDICTED: alpha-(1,6)-fucosyltransferase-like isoform 1 [Acyrthosiphon pisum] gi\|328709470\|ref\|XP_003243969.1\| PREDICTED: alpha-(1,6)-fucosyltransferase-like isoform 2 [Acyrthosiphon pisum]	Back alignment and taxonomy information

>gi\|194764220\|ref\|XP_001964228.1\| GF21438 [Drosophila ananassae] gi\|190619153\|gb\|EDV34677.1\| GF21438 [Drosophila ananassae]	Back alignment and taxonomy information

>gi\|195432518\|ref\|XP_002064270.1\| GK19791 [Drosophila willistoni] gi\|194160355\|gb\|EDW75256.1\| GK19791 [Drosophila willistoni]	Back alignment and taxonomy information

>gi\|195399057\|ref\|XP_002058137.1\| GJ15660 [Drosophila virilis] gi\|194150561\|gb\|EDW66245.1\| GJ15660 [Drosophila virilis]	Back alignment and taxonomy information

>gi\|312380130\|gb\|EFR26214.1\| hypothetical protein AND_07861 [Anopheles darlingi]	Back alignment and taxonomy information

>gi\|125983146\|ref\|XP_001355338.1\| FucT6 [Drosophila pseudoobscura pseudoobscura] gi\|51981062\|emb\|CAH25855.1\| alpha 1,6 fucosyltransferase [Drosophila pseudoobscura] gi\|54643652\|gb\|EAL32395.1\| FucT6 [Drosophila pseudoobscura pseudoobscura]	Back alignment and taxonomy information

>gi\|195355262\|ref\|XP_002044111.1\| GM13053 [Drosophila sechellia] gi\|194129380\|gb\|EDW51423.1\| GM13053 [Drosophila sechellia]	Back alignment and taxonomy information

>gi|18859827|ref|NP_572740.1| alpha1,6-fucosyltransferase [Drosophila melanogaster] gi|33112303|sp|Q9VYV5.1|FUT8_DROME RecName: Full=Alpha-(1,6)-fucosyltransferase; Short=Alpha1-6FucT; AltName: Full=GDP-L-Fuc:N-acetyl-beta-D-glucosaminide alpha1,6-fucosyltransferase; AltName: Full=GDP-fucose--glycoprotein fucosyltransferase; AltName: Full=Glycoprotein 6-alpha-L-fucosyltransferase gi|24637307|gb|AAN63649.1|AF441264_1 alpha 1,6 fucosyltransferase [Drosophila melanogaster] gi|7292682|gb|AAF48079.1| alpha1,6-fucosyltransferase [Drosophila melanogaster] gi|15291213|gb|AAK92875.1| GH11963p [Drosophila melanogaster] gi|220945356|gb|ACL85221.1| FucT6-PA [synthetic construct] gi|220955164|gb|ACL90125.1| FucT6-PA [synthetic construct]

Back alignment and taxonomy information

>gi\|390342486\|ref\|XP_797051.3\| PREDICTED: alpha-(1,6)-fucosyltransferase-like [Strongylocentrotus purpuratus]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		473
UNIPROTKB\|F1PZQ9		575	FUT8 "Alpha-(1,6)-fucosyltrans	0.964	0.793	0.458	3.3e-118
UNIPROTKB\|F1N4H9		575	LOC100851836 "Uncharacterized	0.964	0.793	0.458	1.4e-117
UNIPROTKB\|Q9BYC5		575	FUT8 "Alpha-(1,6)-fucosyltrans	0.961	0.791	0.457	1.8e-117
UNIPROTKB\|F1SA54		575	FUT8 "Alpha-(1,6)-fucosyltrans	0.959	0.789	0.455	3e-117
UNIPROTKB\|Q659X0		575	FUT8 "Alpha-(1,6)-fucosyltrans	0.964	0.793	0.455	3.8e-117
FB\|FBgn0030327		619	FucT6 "alpha1,6-fucosyltransfe	0.972	0.743	0.454	6.2e-117
ZFIN\|ZDB-GENE-031118-20		581	fut8 "fucosyltransferase 8 (al	0.957	0.779	0.459	7.9e-117
UNIPROTKB\|E1BUM7		576	FUT8 "Alpha-(1,6)-fucosyltrans	0.961	0.789	0.457	5.6e-116
UNIPROTKB\|F1ND73		575	FUT8 "Alpha-(1,6)-fucosyltrans	0.961	0.791	0.457	5.6e-116
UNIPROTKB\|F1P2Y4		528	FUT8 "Alpha-(1,6)-fucosyltrans	0.961	0.861	0.457	5.6e-116

UNIPROTKB\|F1PZQ9 FUT8 "Alpha-(1,6)-fucosyltransferase" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

 Score = 1164 (414.8 bits), Expect = 3.3e-118, P = 3.3e-118
 Identities = 213/465 (45%), Positives = 305/465 (65%)

Query:    14 KPYASKHRHILNNIEEFWFYVQSEVRKLK--KSNAVD--VDKILDLTSQFKRSLMTDMEE 69
             K +    R I N  +E WF++QSE++KLK  + N +    D+ L      +RS+MTD+  
Sbjct:   110 KDHEILRRRIENGAKELWFFLQSELKKLKNLEGNVLQRHADEFLSDLGHHERSIMTDLYY 169

Query:    70 LGTLAGGDTLAERQNRRLGELVQARLRHIQNPRDCKTARKVSCQINWACGFGCQLHHVTY 129
             L    G     E++ + L +LVQ R+ ++QNP+DC  A+K+ C IN  CG+GCQLHHV Y
Sbjct:   170 LSQTDGAGDWREKEAKDLTDLVQRRITYLQNPKDCSKAKKLVCNINKGCGYGCQLHHVVY 229

Query:   130 CLIIAYATNRTLVLDSTGWNYHSGGWEEMFEPLSQTCRTATEGSVIYWPDHKPDK--QII 187
             C +IAY T RTL+L+S  W Y +GGWE +F P+S+TC   +  S  +W     DK  Q++
Sbjct:   230 CFMIAYGTQRTLILESQNWRYATGGWETVFRPVSETCTDRSGTSTGHWSGEVKDKNVQVV 289

Query:   188 KLASQTYSLSGPGFIPRAVPQDIAQELI--HGEPIVWWVGQIVKYIFKPNAKVRAMLSHH 245
             +L         P ++P AVP+D+A  L+  HG+P VWWV Q VKY+ +P   +   +   
Sbjct:   290 ELPIVDSLHPRPPYLPLAVPEDLADRLVRVHGDPAVWWVSQFVKYLIRPQPWLEKEIEEA 349

Query:   246 AQQIGFSHPVVGVHIRRTDK-GSEAAPHPIHEYMRHVEEYYAQLSLQVNVTERKVYVATD 304
              +++GF HPV+GVH+RRTDK G+EAA HPI EYM HVEE++  L+ ++ V +R+VY+ATD
Sbjct:   350 TKKLGFKHPVIGVHVRRTDKVGTEAAFHPIEEYMVHVEEHFQLLARRMQVDKRRVYLATD 409

Query:   305 EKGVIMEIRQKYPAYTILGDASTVEAASSDRRYSTAGLLGIITDLYFLSHSDYLVCTFSS 364
             +  ++ E + KYP Y  + D S   +A    RY+   L G+I D++FLS +D+LVCTFSS
Sbjct:   410 DPSLLKEAKTKYPTYEFISDNSISWSAGLHNRYTENSLRGVILDIHFLSQADFLVCTFSS 469

Query:   365 QICRIAYELLNTDHRDASLNFKSLDDIWFFAGQRDNIQLAVLDHTPQTADQIELRVGDEV 424
             Q+CR+AYE++ T H DAS NF SLDDI++F GQ  + Q+A+  H P+TAD+I +  GD +
Sbjct:   470 QVCRVAYEIMQTLHPDASANFHSLDDIYYFGGQNAHNQIAIYPHQPRTADEIPMEPGDII 529

Query:   425 KPAGNHWDGFSRGTNLRTNRHGLYPSFKVISRVETYKFPTYPEVK 469
               AGNHWDG+S+G N +  R GLYPS+KV  ++ET K+PTYPE +
Sbjct:   530 GVAGNHWDGYSKGVNRKLGRTGLYPSYKVREKIETVKYPTYPEAE 574

GO:0043112 "receptor metabolic process" evidence=IEA

GO:0016477 "cell migration" evidence=IEA

GO:0007585 "respiratory gaseous exchange" evidence=IEA

GO:0007229 "integrin-mediated signaling pathway" evidence=IEA

GO:0007179 "transforming growth factor beta receptor signaling pathway" evidence=IEA

GO:0033578 "protein glycosylation in Golgi" evidence=IEA

GO:0032580 "Golgi cisterna membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0008424 "glycoprotein 6-alpha-L-fucosyltransferase activity" evidence=IEA

UNIPROTKB\|F1N4H9 LOC100851836 "Uncharacterized protein" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

UNIPROTKB\|Q9BYC5 FUT8 "Alpha-(1,6)-fucosyltransferase" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

UNIPROTKB\|F1SA54 FUT8 "Alpha-(1,6)-fucosyltransferase" [Sus scrofa (taxid:9823)]	Back alignment and assigned GO terms

UNIPROTKB\|Q659X0 FUT8 "Alpha-(1,6)-fucosyltransferase" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

FB\|FBgn0030327 FucT6 "alpha1,6-fucosyltransferase" [Drosophila melanogaster (taxid:7227)]	Back alignment and assigned GO terms

ZFIN\|ZDB-GENE-031118-20 fut8 "fucosyltransferase 8 (alpha (1,6) fucosyltransferase)" [Danio rerio (taxid:7955)]	Back alignment and assigned GO terms

UNIPROTKB\|E1BUM7 FUT8 "Alpha-(1,6)-fucosyltransferase" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

UNIPROTKB\|F1ND73 FUT8 "Alpha-(1,6)-fucosyltransferase" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

UNIPROTKB\|F1P2Y4 FUT8 "Alpha-(1,6)-fucosyltransferase" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q659X0	FUT8_CANFA	2, ., 4, ., 1, ., 6, 8	0.4606	0.9492	0.7808	yes	N/A
Q9VYV5	FUT8_DROME	2, ., 4, ., 1, ., 6, 8	0.4545	0.9725	0.7431	yes	N/A
Q9WTS2	FUT8_MOUSE	2, ., 4, ., 1, ., 6, 8	0.4585	0.9492	0.7808	yes	N/A
Q9N0W2	FUT8_BOVIN	2, ., 4, ., 1, ., 6, 8	0.4541	0.9492	0.7808	yes	N/A
Q6NVP8	FUT8_XENTR	2, ., 4, ., 1, ., 6, 8	0.4596	0.9471	0.7750	yes	N/A
Q5NVB3	FUT8_PONAB	2, ., 4, ., 1, ., 6, 8	0.4640	0.9450	0.7787	yes	N/A
P79282	FUT8_PIG	2, ., 4, ., 1, ., 6, 8	0.4485	0.9471	0.7791	yes	N/A
Q6EV77	FUT8_PANTR	2, ., 4, ., 1, ., 6, 8	0.4618	0.9471	0.7791	yes	N/A
Q6EV76	FUT8_RAT	2, ., 4, ., 1, ., 6, 8	0.4585	0.9492	0.7808	yes	N/A
Q9BYC5	FUT8_HUMAN	2, ., 4, ., 1, ., 6, 8	0.4618	0.9471	0.7791	yes	N/A

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.4.1	0.766
4th Layer	2.4.1.68	0.824

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Alignment Graph	Length	Definition	E-value
Query		473
cd11300		328	cd11300, Fut8_like, Alpha 1-6-fucosyltransferase	1e-151
cd11792		55	cd11792, SH3_Fut8, Src homology 3 domain of Alpha1	3e-25
cd11548		287	cd11548, NodZ_like, Alpha 1,6-fucosyltransferase s	4e-10
cd11296		206	cd11296, O-FucT_like, GDP-fucose protein O-fucosyl	1e-07
cd11925		57	cd11925, SH3_SH3RF3_3, Third Src Homology 3 domain	1e-05
cd11784		55	cd11784, SH3_SH3RF2_3, Third Src Homology 3 domain	3e-05
cd11801		55	cd11801, SH3_JIP1_like, Src homology 3 domain of J	6e-05
cd11296		206	cd11296, O-FucT_like, GDP-fucose protein O-fucosyl	3e-04
cd11783		55	cd11783, SH3_SH3RF_3, Third Src Homology 3 domain	4e-04
cd11785		55	cd11785, SH3_SH3RF_C, C-terminal (Fourth) Src Homo	4e-04
cd11942		55	cd11942, SH3_JIP2, Src homology 3 domain of JNK-in	0.001
cd11918		58	cd11918, SH3_Vinexin_3, Third (or C-terminal) Src	0.002
cd11791		59	cd11791, SH3_UBASH3, Src homology 3 domain of Ubiq	0.002
cd11916		59	cd11916, SH3_Sorbs1_3, Third (or C-terminal) Src H	0.002
cd11780		55	cd11780, SH3_Sorbs_3, Third (or C-terminal) Src Ho	0.003

>gnl\|CDD\|211386 cd11300, Fut8_like, Alpha 1-6-fucosyltransferase	Back alignment and domain information

 Score =  432 bits (1113), Expect = e-151
 Identities = 158/317 (49%), Positives = 215/317 (67%), Gaps = 7/317 (2%)

Query: 85  RRLGELVQARLRHIQNPRDCKTARKVSCQINWACGFGCQLHHVTYCLIIAYATNRTLVLD 144
           ++L +LVQ R+  +QNP+DC  A+K+ C +N  CGFGCQLHHV YCLI+AY TNRTL+LD
Sbjct: 12  KKLSKLVQKRIHKLQNPKDCSKAKKLVCNLNKGCGFGCQLHHVVYCLIVAYGTNRTLILD 71

Query: 145 STGWNYHSGGWEEMFEPLSQTCRTATEGSVIYWPDHKP--DKQIIKLASQTYSLSGPGFI 202
           S GW Y  GGWE++F PLS+TC   +  +   W       D Q++KL       S P F+
Sbjct: 72  SKGWRYSPGGWEKVFLPLSETCTDRSGDNTAVWWWEPTNSDVQVVKLPIIDSLHSRPPFL 131

Query: 203 PRAVPQDIAQEL--IHGEPIVWWVGQIVKYIFKPNAKVRAMLSHHAQQIGFSHPVVGVHI 260
           P AVP+D+A+ L  +HG+P VWW+GQ++KY+ +P   ++  +    +++GF HP+VGVHI
Sbjct: 132 PLAVPEDLAERLERLHGDPRVWWIGQLLKYLMRPQPWLQDEIDEAKKELGFKHPIVGVHI 191

Query: 261 RRTDK-GSEAAPHPIHEYMRHVEEYYAQLSL--QVNVTERKVYVATDEKGVIMEIRQKYP 317
           RRTDK G+EAA H + EYM HVEE+Y +  L       +R+VY+ATD+  V  E + KYP
Sbjct: 192 RRTDKLGTEAAFHSLEEYMEHVEEWYDKYELRGPSEKVKRRVYLATDDPSVFDEAKNKYP 251

Query: 318 AYTILGDASTVEAASSDRRYSTAGLLGIITDLYFLSHSDYLVCTFSSQICRIAYELLNTD 377
            Y  +GD    ++AS   RYS + L GII D++ LS  DYLVCTFSSQ+CR+AYEL+ T 
Sbjct: 252 NYFFIGDPGISKSASLSTRYSDSSLKGIIIDIHLLSECDYLVCTFSSQVCRLAYELMQTR 311

Query: 378 HRDASLNFKSLDDIWFF 394
           H DAS  F SLDDI+++
Sbjct: 312 HPDASDRFHSLDDIYYY 328

Alpha 1,6-fucosyltransferase (Fut8) transfers a fucose moiety from GDP-fucose to the reducing terminal N-acetylglucosamine of the core structure of Asn-linked oligosaccharides, in a process termed core fucosylation. Core fucosylation is essential for the function of growth factor receptors. O-fucosyltransferase-like proteins are GDP-fucose dependent enzymes with similarities to the family 1 glycosyltransferases (GT1). They are soluble ER proteins that may be proteolytically cleaved from a membrane-associated preprotein, and are involved in the O-fucosylation of protein substrates, the core fucosylation of growth factor receptors, and other processes. Length = 328

>gnl\|CDD\|212726 cd11792, SH3_Fut8, Src homology 3 domain of Alpha1,6-fucosyltransferase (Fut8)	Back alignment and domain information

>gnl\|CDD\|211389 cd11548, NodZ_like, Alpha 1,6-fucosyltransferase similar to Bradyrhizobium NodZ	Back alignment and domain information

>gnl\|CDD\|211383 cd11296, O-FucT_like, GDP-fucose protein O-fucosyltransferase and related proteins	Back alignment and domain information

>gnl\|CDD\|212858 cd11925, SH3_SH3RF3_3, Third Src Homology 3 domain of SH3 domain containing ring finger 3, an E3 ubiquitin-protein ligase	Back alignment and domain information

>gnl\|CDD\|212718 cd11784, SH3_SH3RF2_3, Third Src Homology 3 domain of SH3 domain containing ring finger 2	Back alignment and domain information

>gnl\|CDD\|212735 cd11801, SH3_JIP1_like, Src homology 3 domain of JNK-interacting proteins 1 and 2, and similar domains	Back alignment and domain information

>gnl\|CDD\|211383 cd11296, O-FucT_like, GDP-fucose protein O-fucosyltransferase and related proteins	Back alignment and domain information

>gnl\|CDD\|212717 cd11783, SH3_SH3RF_3, Third Src Homology 3 domain of SH3 domain containing ring finger 1 (SH3RF1), SH3RF3, and similar domains	Back alignment and domain information

>gnl\|CDD\|212719 cd11785, SH3_SH3RF_C, C-terminal (Fourth) Src Homology 3 domain of SH3 domain containing ring finger 1 (SH3RF1), SH3RF3, and similar domains	Back alignment and domain information

>gnl\|CDD\|212875 cd11942, SH3_JIP2, Src homology 3 domain of JNK-interacting protein 2	Back alignment and domain information

>gnl\|CDD\|212851 cd11918, SH3_Vinexin_3, Third (or C-terminal) Src Homology 3 domain of Vinexin, also called Sorbin and SH3 domain containing 3 (Sorbs3)	Back alignment and domain information

>gnl\|CDD\|212725 cd11791, SH3_UBASH3, Src homology 3 domain of Ubiquitin-associated and SH3 domain-containing proteins, also called TULA (T cell Ubiquitin LigAnd) family of proteins	Back alignment and domain information

>gnl\|CDD\|212849 cd11916, SH3_Sorbs1_3, Third (or C-terminal) Src Homology 3 domain of Sorbin and SH3 domain containing 1 (Sorbs1), also called ponsin	Back alignment and domain information

>gnl\|CDD\|212714 cd11780, SH3_Sorbs_3, Third (or C-terminal) Src Homology 3 domain of Sorbin and SH3 domain containing (Sorbs) proteins and similar domains	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		473
KOG3705\|consensus		580		100.0
PF05830		321	NodZ: Nodulation protein Z (NodZ); InterPro: IPR00	99.95
PF03254		476	XG_FTase: Xyloglucan fucosyltransferase; InterPro:	99.53
PF14604		49	SH3_9: Variant SH3 domain; PDB: 2CRE_A 2E5K_A 2CT3	99.25
PF01531		298	Glyco_transf_11: Glycosyl transferase family 11; I	99.22
KOG4225\|consensus		489		99.22
PF10250		351	O-FucT: GDP-fucose protein O-fucosyltransferase; I	99.15
PF00018		48	SH3_1: SH3 domain; InterPro: IPR001452 SH3 (src Ho	98.91
PF07653		55	SH3_2: Variant SH3 domain; InterPro: IPR011511 SH3	98.77
smart00326		58	SH3 Src homology 3 domains. Src homology 3 (SH3) d	98.67
cd00174		54	SH3 Src homology 3 domains; SH3 domains bind to pr	98.64
KOG4348\|consensus		627		98.6
KOG1702\|consensus		264		98.42
KOG3775\|consensus		482		98.28
KOG1118\|consensus		366		98.27
KOG2199\|consensus		462		97.99
KOG4226\|consensus		379		97.84
KOG2856\|consensus		472		97.82
KOG1029\|consensus		1118		97.77
KOG4225\|consensus		489		97.55
KOG3849\|consensus		386		97.45
KOG0162\|consensus		1106		97.31
KOG2070\|consensus		661		97.26
KOG1029\|consensus		1118		97.21
KOG2546\|consensus		483		97.12
KOG3523\|consensus		695		97.12
KOG4348\|consensus		627		97.05
KOG2996\|consensus		865		96.96
KOG3655\|consensus		484		96.88
KOG4226\|consensus		379		96.44
KOG3875\|consensus		362		96.18
KOG2528\|consensus		490		95.54
KOG0199\|consensus		1039		95.45
KOG1264\|consensus		1267		95.42
KOG3632\|consensus		1335		94.49
KOG0197\|consensus		468		92.56
KOG3601\|consensus		222		92.46
KOG4773\|consensus		386		92.4
KOG3632\|consensus		1335		91.93
KOG3771\|consensus		460		91.4
KOG1843\|consensus		473		91.28
KOG3565\|consensus		640		89.91
KOG4792\|consensus		293		89.73
KOG0515\|consensus		752		89.55
KOG1451\|consensus		812		89.02
KOG4575\|consensus		874		87.12
KOG2996\|consensus		865		86.5
KOG4278\|consensus		1157		86.29
KOG4792\|consensus		293		83.02

>KOG3705\|consensus	Back alignment and domain information

Probab=100.00  E-value=1.6e-139  Score=1033.66  Aligned_cols=455  Identities=43%  Similarity=0.846  Sum_probs=443.4

Q ss_pred             chhHHHHHhhhhcHHHHHHHHHHHHHHHhhcCh----hhHHHHHHhHHHHHHHHHHHHHHHhcccChhhHHHHHhHHHHH
Q psy1897          14 KPYASKHRHILNNIEEFWFYVQSEVRKLKKSNA----VDVDKILDLTSQFKRSLMTDMEELGTLAGGDTLAERQNRRLGE   89 (473)
Q Consensus        14 ~~~e~l~r~~~~~~~e~~~~~~~~~~~l~~~~~----~~~~~~~~~~~~~~~~l~~d~~~l~~~d~~~~w~~~~~~~L~~   89 (473)
                      ..||++||||+++|+|||++|++||.|+++...    ...+.++-.+.+|++|||.|++.|.++||+++||.|+...||+
T Consensus       116 ~dhE~~rRri~~~i~E~w~fl~Sel~kvr~~~~~dl~e~~~~~LL~~~~h~rSlm~d~~~l~q~dG~e~wR~Kea~dlt~  195 (580)
T KOG3705|consen  116 VDHEVQRRRIDDRIREMWYFLHSELGKVRKAASADLIENSTKILLETAEHMRSLMGDSAQLEQLDGSEEWRFKEATDLTQ  195 (580)
T ss_pred             ccHHHHHHHHHhhHHHHHHHHHHHHHHHhhhhhhhHHhhHHHHHHhhHHHHHHHHhHHHHHHhccCcHHHHHhHHhHHHH
Confidence            489999999999999999999999999998653    6677888888999999999999999999999999999999999


Q ss_pred             HHHHHHhhhcCCCCCCCCCEEEEEecCCCchhHHHHHHHHHHHHHHHcCcEEEEecCCCcccCCCcccccccCCCcCCCC
Q psy1897          90 LVQARLRHIQNPRDCKTARKVSCQINWACGFGCQLHHVTYCLIIAYATNRTLVLDSTGWNYHSGGWEEMFEPLSQTCRTA  169 (473)
Q Consensus        90 ~vq~~i~~~QNP~dC~~aK~Lv~~~~~~~GfG~~lh~l~~~l~~A~~t~Rtliid~~~~~Y~~~gw~~~F~P~S~~C~~~  169 (473)
                      +||+||+++|||+||++||+|||+++++||+||++||++||++.|++|.||||+.+.+|.|+.|||+..|+|+|++|.++
T Consensus       196 lvqrri~~LQNPkdCs~AkkLVCnlnKgCGyGCQLHHVvYCfi~AyaTqRtliLks~gWrY~~gGWe~VF~pvS~~c~D~  275 (580)
T KOG3705|consen  196 LVQRRIEKLQNPKDCSEAKKLVCNLNKGCGYGCQLHHVVYCFITAYATQRTLILKSDGWRYSSGGWESVFKPVSKCCFDE  275 (580)
T ss_pred             HHHHHHHHhcChHhhHHHhhheeeccCCcccccceeeeeEeeeeeeecceEEEEecCCceecCCChhhhhhhhhhccccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCcccCCCC-CCCCceEEecceeccCCCCCcccCCCchhhHhhhh--cCChHHHHHHHHhhhhcccCHHHHHHHHHHH
Q psy1897         170 TEGSVIYWPDH-KPDKQIIKLASQTYSLSGPGFIPRAVPQDIAQELI--HGEPIVWWVGQIVKYIFKPNAKVRAMLSHHA  246 (473)
Q Consensus       170 ~~~~~~~W~~~-~~~~~vv~~p~~~~~~~~~~f~p~~vP~~l~~~L~--h~~p~~w~~~q~~~yl~Rp~~~~~~~I~~~~  246 (473)
                      ...+...|++. .++.||+.+||+|+++++|+|+|++||+|+++||.  ||+|.+||.||+++||+||+|+++++|++..
T Consensus       276 ~~~nT~~wpg~~~~n~qVv~LpIvDSL~prPpyLPlAVPEdLa~rL~rlHgdP~vwwVgqFikYL~Rpqp~t~~~l~~a~  355 (580)
T KOG3705|consen  276 AVGNTEAWPGAEPSNAQVVSLPIVDSLIPRPPYLPLAVPEDLAERLTRLHGDPPVWWVGQFIKYLMRPQPATQEKLDKAL  355 (580)
T ss_pred             ccccccCCCCCCCCCceEEEeecccccCCCCCCccccCcHHHHHHHHHhcCCCceeeHHHHHHHHhCCChhhHHHHHHHH
Confidence            88888899996 44789999999999999999999999999999998  9999999999999999999999999999999


Q ss_pred             HHhCCCCCeeeEEEeeCCC-CCCCCCcChhhHHHHHHHHHHHHhcccCCCccEEEEeCCChHHHHHHHhhCCCcEEEcCC
Q psy1897         247 QQIGFSHPVVGVHIRRTDK-GSEAAPHPIHEYMRHVEEYYAQLSLQVNVTERKVYVATDEKGVIMEIRQKYPAYTILGDA  325 (473)
Q Consensus       247 ~~l~~~~piVGVHIRrgDK-~~E~~~~~~~~Ym~~v~~~~~~~~~~~~~~~~~IfLATDdp~v~~e~k~~yp~~~~~~~~  325 (473)
                      +.|+|.+|||||||||||| ++||++|+++|||.+||.||+.++.++....+|||||||||.|+.|+|++||+|.|++|+
T Consensus       356 k~lg~~~PivGvhvRRTDKVGTEAAfH~~eEYM~~vE~~f~~le~rg~~~~rRiflAsDDp~vv~EAk~kYPnYe~igd~  435 (580)
T KOG3705|consen  356 KSLGLDKPIVGVHVRRTDKVGTEAAFHALEEYMEWVEIWFKVLEKRGKPLERRIFLASDDPTVVPEAKNKYPNYEVIGDT  435 (580)
T ss_pred             HhCCCCCceeeEEEEecccccchhhhhhHHHHHHHHHHHHHHHHHhCCchhheEEEecCCchhchHhhccCCCcEEeccH
Confidence            9999999999999999999 799999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccccccccccCChhhHHHHHHHHHHHhCCCeeeecCCChHHHHHHHHhccCCCCCCCCeeecccccccccccccchhhh
Q psy1897         326 STVEAASSDRRYSTAGLLGIITDLYFLSHSDYLVCTFSSQICRIAYELLNTDHRDASLNFKSLDDIWFFAGQRDNIQLAV  405 (473)
Q Consensus       326 ~~s~~a~~~~R~s~~~l~~~l~Dl~lLs~cD~~VgT~sSn~~rla~eLr~~~~~d~~~~~~SLD~~y~~~g~~~~~~~a~  405 (473)
                      +++.+|++.+|+++++++++++||++||++||+||||||+|||++||+||+.++||+.+|+||||+|||+||++|.++||
T Consensus       436 eia~~A~l~nRYTd~sL~GvIlDIh~LS~~d~LVCTFSSQVCRvaYEimQt~~pDa~~~FhSLDDIYYfGGQnAHn~ivi  515 (580)
T KOG3705|consen  436 EIAKTAQLNNRYTDASLMGVILDIHILSKVDYLVCTFSSQVCRVAYEIMQTSGPDAGSKFHSLDDIYYFGGQNAHNVIVI  515 (580)
T ss_pred             HHHHHhhccccchhhhhhheeeeeeeecccceEEEechHHHHHHHHHHHhccCCCcccccccccceeeecCccccceEEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCCCCCCccccCCCCeEeeccccccceeeeEecCCCeeeeeeCcceeecccCCCCCCCCCC
Q psy1897         406 LDHTPQTADQIELRVGDEVKPAGNHWDGFSRGTNLRTNRHGLYPSFKVISRVETYKFPTYPEV  468 (473)
Q Consensus       406 ~~~~~~~~~el~l~~GD~i~~~~~~~~G~~~g~n~rt~~~Gl~P~~~v~~~~~~~~~p~~~~~  468 (473)
                      ++|.|++.+||+|+|||+|+|+|||||||+||+|++|++.||||+|||+.+++++.+|+|..+
T Consensus       516 ~aH~prt~~ei~l~vGD~vgvAGNHWdGySKG~Nr~t~~~GlfPSyKvrek~~t~k~ply~~~  578 (580)
T KOG3705|consen  516 EAHIPRTNKEIDLKVGDKVGVAGNHWDGYSKGTNRQTYKEGLFPSYKVREKFITIKIPLYVLF  578 (580)
T ss_pred             EecCCCcccccCcccCCeeeecccccccccccccccccccCCCccceeeeeEEEeeecchhhh
Confidence            999999999999999999999999999999999999999999999999999999999999764

>PF05830 NodZ: Nodulation protein Z (NodZ); InterPro: IPR008716 The nodulation genes of Rhizobia are regulated by the nodD gene product in response to host-produced flavonoids and appear to encode enzymes involved in the production of a lipo-chitose signal molecule required for infection and nodule formation	Back alignment and domain information

>PF03254 XG_FTase: Xyloglucan fucosyltransferase; InterPro: IPR004938 Plant cell walls are crucial for development, signal transduction, and disease resistance in plants	Back alignment and domain information

>PF14604 SH3_9: Variant SH3 domain; PDB: 2CRE_A 2E5K_A 2CT3_A 2DE0_X 2D8H_A 2DA9_A 2X3X_E 2X3W_D 2KRN_A 2ED0_A	Back alignment and domain information

>PF01531 Glyco_transf_11: Glycosyl transferase family 11; InterPro: IPR002516 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases	Back alignment and domain information

>KOG4225\|consensus	Back alignment and domain information

>PF10250 O-FucT: GDP-fucose protein O-fucosyltransferase; InterPro: IPR019378 This is a family of conserved proteins representing the enzyme responsible for adding O-fucose to EGF (epidermal growth factor-like) repeats	Back alignment and domain information

>PF00018 SH3_1: SH3 domain; InterPro: IPR001452 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]	Back alignment and domain information

>PF07653 SH3_2: Variant SH3 domain; InterPro: IPR011511 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]	Back alignment and domain information

>smart00326 SH3 Src homology 3 domains	Back alignment and domain information

>cd00174 SH3 Src homology 3 domains; SH3 domains bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs; they play a role in the regulation of enzymes by intramolecular interactions, changing the subcellular localization of signal pathway components and mediate multiprotein complex assemblies	Back alignment and domain information

>KOG4348\|consensus	Back alignment and domain information

>KOG1702\|consensus	Back alignment and domain information

>KOG3775\|consensus	Back alignment and domain information

>KOG1118\|consensus	Back alignment and domain information

>KOG2199\|consensus	Back alignment and domain information

>KOG4226\|consensus	Back alignment and domain information

>KOG2856\|consensus	Back alignment and domain information

>KOG1029\|consensus	Back alignment and domain information

>KOG4225\|consensus	Back alignment and domain information

>KOG3849\|consensus	Back alignment and domain information

>KOG0162\|consensus	Back alignment and domain information

>KOG2070\|consensus	Back alignment and domain information

>KOG1029\|consensus	Back alignment and domain information

>KOG2546\|consensus	Back alignment and domain information

>KOG3523\|consensus	Back alignment and domain information

>KOG4348\|consensus	Back alignment and domain information

>KOG2996\|consensus	Back alignment and domain information

>KOG3655\|consensus	Back alignment and domain information

>KOG4226\|consensus	Back alignment and domain information

>KOG3875\|consensus	Back alignment and domain information

>KOG2528\|consensus	Back alignment and domain information

>KOG0199\|consensus	Back alignment and domain information

>KOG1264\|consensus	Back alignment and domain information

>KOG3632\|consensus	Back alignment and domain information

>KOG0197\|consensus	Back alignment and domain information

>KOG3601\|consensus	Back alignment and domain information

>KOG4773\|consensus	Back alignment and domain information

>KOG3632\|consensus	Back alignment and domain information

>KOG3771\|consensus	Back alignment and domain information

>KOG1843\|consensus	Back alignment and domain information

>KOG3565\|consensus	Back alignment and domain information

>KOG4792\|consensus	Back alignment and domain information

>KOG0515\|consensus	Back alignment and domain information

>KOG1451\|consensus	Back alignment and domain information

>KOG4575\|consensus	Back alignment and domain information

>KOG2996\|consensus	Back alignment and domain information

>KOG4278\|consensus	Back alignment and domain information

>KOG4792\|consensus	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		473
2de0_X		526	Crystal Structure Of Human Alpha 1,6-fucosyltransfe		1e-126

>pdb|2DE0|X Chain X, Crystal Structure Of Human Alpha 1,6-fucosyltransferase, Fut8 Length = 526

Back alignment and structure

Iteration: 1

Score = 449 bits (1154), Expect = e-126, Method: Compositional matrix adjust. Identities = 212/459 (46%), Positives = 304/459 (66%), Gaps = 11/459 (2%) Query: 21 RHILNNIEEFWFYVQSEVRKLKKSNAVDVDK-----ILDLTSQFKRSLMTDMEELGTLAG 75 R I N +E WF++QSE++KLK ++ + +LDL +RS+MTD+ L G Sbjct: 55 RRIENGAKELWFFLQSELKKLKNLEGNELQRHADEFLLDL-GHHERSIMTDLYYLSQTDG 113 Query: 76 GDTLAERQNRRLGELVQARLRHIQNPRDCKTARKVSCQINWACGFGCQLHHVTYCLIIAY 135 E++ + L ELVQ R+ ++QNP+DC A+K+ C IN CG+GCQLHHV YC +IAY Sbjct: 114 AGDWREKEAKDLTELVQRRITYLQNPKDCSKAKKLVCNINKGCGYGCQLHHVVYCFMIAY 173 Query: 136 ATNRTLVLDSTGWNYHSGGWEEMFEPLSQTCRTATEGSVIYWPDHKPDK--QIIKLASQT 193 T RTL+L+S W Y +GGWE +F P+S+TC + S +W DK Q+++L Sbjct: 174 GTQRTLILESQNWRYATGGWETVFRPVSETCTDRSGISTGHWSGEVKDKNVQVVELPIVD 233 Query: 194 YSLSGPGFIPRAVPQDIAQELI--HGEPIVWWVGQIVKYIFKPNAKVRAMLSHHAQQIGF 251 P ++P AVP+D+A L+ HG+P VWWV Q VKY+ +P + + +++GF Sbjct: 234 SLHPRPPYLPLAVPEDLADRLVRVHGDPAVWWVSQFVKYLIRPQPWLEKEIEEATKKLGF 293 Query: 252 SHPVVGVHIRRTDK-GSEAAPHPIHEYMRHVEEYYAQLSLQVNVTERKVYVATDEKGVIM 310 HPV+GVH+RRTDK G+EAA HPI EYM HVEE++ L+ ++ V +++VY+ATD+ ++ Sbjct: 294 KHPVIGVHVRRTDKVGTEAAFHPIEEYMVHVEEHFQLLARRMQVDKKRVYLATDDPSLLK 353 Query: 311 EIRQKYPAYTILGDASTVEAASSDRRYSTAGLLGIITDLYFLSHSDYLVCTFSSQICRIA 370 E + KYP Y + D S +A RY+ L G+I D++FLS +D+LVCTFSSQ+CR+A Sbjct: 354 EAKTKYPNYEFISDNSISWSAGLHNRYTENSLRGVILDIHFLSQADFLVCTFSSQVCRVA 413 Query: 371 YELLNTDHRDASLNFKSLDDIWFFAGQRDNIQLAVLDHTPQTADQIELRVGDEVKPAGNH 430 YE++ T H DAS NF SLDDI++F GQ + Q+A+ H P+TAD+I + GD + AGNH Sbjct: 414 YEIMQTLHPDASANFHSLDDIYYFGGQNAHNQIAIYAHQPRTADEIPMEPGDIIGVAGNH 473 Query: 431 WDGFSRGTNLRTNRHGLYPSFKVISRVETYKFPTYPEVK 469 WDG+S+G N + R GLYPS+KV ++ET K+PTYPE + Sbjct: 474 WDGYSKGVNRKLGRTGLYPSYKVREKIETVKYPTYPEAE 512

PyMOL of 2de0

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		473
2de0_X		526	Alpha-(1,6)-fucosyltransferase; FUT8, glycosyltran	1e-154
2hhc_A		330	NODZ, nodulation fucosyltransferase NODZ; glycosyl	5e-47
2fpf_A		71	C-JUN-amino-terminal kinase interacting protein 1;	8e-08
2fpe_A		62	C-JUN-amino-terminal kinase interacting protein 1;	1e-06
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-06
2e5k_A		94	Suppressor of T-cell receptor signaling 1; SH3 dom	8e-06
4ap5_A		408	GDP-fucose protein O-fucosyltransferase 2; GT-B, G	5e-05
2ct3_A		70	Vinexin; SH3 domian, structural genomics, NPPSFA,	8e-05

>2de0_X Alpha-(1,6)-fucosyltransferase; FUT8, glycosyltransferase, N-glycan, COR SH3 domain; 2.61A {Homo sapiens} Length = 526	Back alignment and structure

 Score =  448 bits (1152), Expect = e-154
 Identities = 209/463 (45%), Positives = 301/463 (65%), Gaps = 9/463 (1%)

Query: 16  YASKHRHILNNIEEFWFYVQSEVRKLKKSNAVD----VDKILDLTSQFKRSLMTDMEELG 71
           +    R I N  +E WF++QSE++KLK     +     D+ L      +RS+MTD+  L 
Sbjct: 50  HEILRRRIENGAKELWFFLQSELKKLKNLEGNELQRHADEFLLDLGHHERSIMTDLYYLS 109

Query: 72  TLAGGDTLAERQNRRLGELVQARLRHIQNPRDCKTARKVSCQINWACGFGCQLHHVTYCL 131
              G     E++ + L ELVQ R+ ++QNP+DC  A+K+ C IN  CG+GCQLHHV YC 
Sbjct: 110 QTDGAGDWREKEAKDLTELVQRRITYLQNPKDCSKAKKLVCNINKGCGYGCQLHHVVYCF 169

Query: 132 IIAYATNRTLVLDSTGWNYHSGGWEEMFEPLSQTCRTATEGSVIYWP--DHKPDKQIIKL 189
           +IAY T RTL+L+S  W Y +GGWE +F P+S+TC   +  S  +W       + Q+++L
Sbjct: 170 MIAYGTQRTLILESQNWRYATGGWETVFRPVSETCTDRSGISTGHWSGEVKDKNVQVVEL 229

Query: 190 ASQTYSLSGPGFIPRAVPQDIAQEL--IHGEPIVWWVGQIVKYIFKPNAKVRAMLSHHAQ 247
                    P ++P AVP+D+A  L  +HG+P VWWV Q VKY+ +P   +   +    +
Sbjct: 230 PIVDSLHPRPPYLPLAVPEDLADRLVRVHGDPAVWWVSQFVKYLIRPQPWLEKEIEEATK 289

Query: 248 QIGFSHPVVGVHIRRTDK-GSEAAPHPIHEYMRHVEEYYAQLSLQVNVTERKVYVATDEK 306
           ++GF HPV+GVH+RRTDK G+EAA HPI EYM HVEE++  L+ ++ V +++VY+ATD+ 
Sbjct: 290 KLGFKHPVIGVHVRRTDKVGTEAAFHPIEEYMVHVEEHFQLLARRMQVDKKRVYLATDDP 349

Query: 307 GVIMEIRQKYPAYTILGDASTVEAASSDRRYSTAGLLGIITDLYFLSHSDYLVCTFSSQI 366
            ++ E + KYP Y  + D S   +A    RY+   L G+I D++FLS +D+LVCTFSSQ+
Sbjct: 350 SLLKEAKTKYPNYEFISDNSISWSAGLHNRYTENSLRGVILDIHFLSQADFLVCTFSSQV 409

Query: 367 CRIAYELLNTDHRDASLNFKSLDDIWFFAGQRDNIQLAVLDHTPQTADQIELRVGDEVKP 426
           CR+AYE++ T H DAS NF SLDDI++F GQ  + Q+A+  H P+TAD+I +  GD +  
Sbjct: 410 CRVAYEIMQTLHPDASANFHSLDDIYYFGGQNAHNQIAIYAHQPRTADEIPMEPGDIIGV 469

Query: 427 AGNHWDGFSRGTNLRTNRHGLYPSFKVISRVETYKFPTYPEVK 469
           AGNHWDG+S+G N +  R GLYPS+KV  ++ET K+PTYPE +
Sbjct: 470 AGNHWDGYSKGVNRKLGRTGLYPSYKVREKIETVKYPTYPEAE 512

PyMOL of 2de0

>2hhc_A NODZ, nodulation fucosyltransferase NODZ; glycosyltransferase; 1.54A {Bradyrhizobium SP} PDB: 2hlh_A 2ocx_A* 3siw_A* 3six_A* Length = 330	Back alignment and structure

>2fpf_A C-JUN-amino-terminal kinase interacting protein 1; scaffold protein 1, islet-brain-1, IB-1, mitogen-activated P kinase 8-interacting protein 1; 3.00A {Rattus norvegicus} Length = 71	Back alignment and structure

>2fpe_A C-JUN-amino-terminal kinase interacting protein 1; SRC-homology 3 (SH3) domain, all beta structure, signaling protein; HET: P6G; 1.75A {Rattus norvegicus} PDB: 2fpd_A* Length = 62	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>2e5k_A Suppressor of T-cell receptor signaling 1; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 94	Back alignment and structure

>4ap5_A GDP-fucose protein O-fucosyltransferase 2; GT-B, GT68; HET: NAG; 3.00A {Homo sapiens} PDB: 4ap6_A* Length = 408	Back alignment and structure

>2ct3_A Vinexin; SH3 domian, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 70	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		473
2de0_X		526	Alpha-(1,6)-fucosyltransferase; FUT8, glycosyltran	100.0
2hhc_A		330	NODZ, nodulation fucosyltransferase NODZ; glycosyl	99.93
2lj0_A		65	Sorbin and SH3 domain-containing protein 1; R85FL,	99.42
2fpe_A		62	C-JUN-amino-terminal kinase interacting protein 1;	99.29
2fpf_A		71	C-JUN-amino-terminal kinase interacting protein 1;	99.29
3zy2_A		362	Putative GDP-fucose protein O-fucosyltransferase;	99.28
2lx7_A		60	GAS-7, growth arrest-specific protein 7; structura	99.23
1jo8_A		58	ABP1P, actin binding protein; SH3 domain actin-bin	99.22
2j05_A		65	RAS GTPase-activating protein 1; GTPase activation	99.22
2ct3_A		70	Vinexin; SH3 domian, structural genomics, NPPSFA,	99.22
2gqi_A		71	RAS GTPase-activating protein 1; GAP, RAS P21 prot	99.21
4ap5_A		408	GDP-fucose protein O-fucosyltransferase 2; GT-B, G	99.17
2cuc_A		70	SH3 domain containing ring finger 2; structural ge	99.16
1yn8_A		59	NBP2, NAP1-binding protein 2; SH3 domain, unknown	99.16
2ecz_A		70	Sorbin and SH3 domain-containing protein 1; glycop	99.16
1zuy_A		58	Myosin-5 isoform; SH3 domain, contractIle protein;	99.15
2lcs_A		73	NAP1-binding protein 2; adaptor, transferase, sign	99.15
2e5k_A		94	Suppressor of T-cell receptor signaling 1; SH3 dom	99.14
1spk_A		72	RSGI RUH-010, riken cDNA 1300006M19; structural ge	99.14
3o5z_A		90	Phosphatidylinositol 3-kinase regulatory subunit;	99.14
4f14_A		64	Nebulette; SH3 domain, heart muscle, actin-binding	99.14
3rnj_A		67	Brain-specific angiogenesis inhibitor 1-associate	99.14
2v1q_A		60	SLA1, cytoskeleton assembly control protein SLA1;	99.13
2o9s_A		67	Ponsin; SH3 domain, signaling protein; 0.83A {Homo	99.12
2kxc_A		67	Brain-specific angiogenesis inhibitor 1-associate	99.12
2iim_A		62	Proto-oncogene tyrosine-protein kinase LCK; beta-b	99.1
1ruw_A		69	Myosin-3 isoform, MYO3; SH3 domain, yeast, high-th	99.1
3h0h_A		73	Proto-oncogene tyrosine-protein kinase FYN; beta b	99.09
2g6f_X		59	RHO guanine nucleotide exchange factor 7; SH3 doma	99.09
1x6b_A		79	RHO guanine exchange factor (GEF) 16; SH3 domain,	99.09
2jt4_A		71	Cytoskeleton assembly control protein SLA1; endocy	99.08
1tg0_A		68	BBC1 protein, myosin tail region-interacting prote	99.08
2xmf_A		60	Myosin 1E SH3; motor protein, SH3 domain; HET: DIA	99.08
3cqt_A		79	P59-FYN, proto-oncogene tyrosine-protein kinase FY	99.08
2yup_A		90	Vinexin; sorbin and SH3 domain-containing protein	99.07
1zuu_A		58	BZZ1 protein; SH3 domain, unknown function; 0.97A	99.07
1w1f_A		65	Tyrosine-protein kinase LYN; SH3-domain, SH3 domai	99.06
1zx6_A		58	YPR154WP; SH3 domain, protein binding; 1.60A {Sacc	99.06
2bz8_A		58	SH3-domain kinase binding protein 1; SH3 domain, C	99.06
2ed1_A		76	130 kDa phosphatidylinositol 4,5-biphosphate- depe	99.05
1ue9_A		80	Intersectin 2; beta barrel, SH3 domain, riken stru	99.05
2dl4_A		68	Protein STAC; SH3 domain, STAC protein, SRC homolo	99.04
2oaw_A		65	Spectrin alpha chain, brain; SH3 domain, chimera,	99.04
1cka_A		57	C-CRK N-terminal SH3 domain; complex (oncogene pro	99.04
2vwf_A		58	Growth factor receptor-bound protein 2; polymorphi	99.04
3i5r_A		83	Phosphatidylinositol 3-kinase regulatory subunit a	99.04
2d8j_A		77	FYN-related kinase; SH3 domain, structural genomic	99.04
1k4u_S		62	Phagocyte NADPH oxidase subunit P67PHOX; SH3-pepti	99.03
1uti_A		58	GRB2-related adaptor protein 2; signaling protein	99.03
2fei_A		65	CD2-associated protein; CMS SH3 domain, structural	99.03
2dlp_A		85	KIAA1783 protein; SH3 domain, structural genomics,	99.03
2a28_A		54	BZZ1 protein; SH3 domain, signaling protein; 1.07A	99.03
1u5s_A		71	Cytoplasmic protein NCK2; protein-protein complex,	99.02
2ew3_A		68	SH3-containing GRB2-like protein 3; SH3GL3, soluti	99.02
2nwm_A		65	Vinexin; cell adhesion; NMR {Homo sapiens}	99.02
2drm_A		58	Acanthamoeba myosin IB; SH3 domain, contractIle pr	99.01
1oot_A		60	Hypothetical 40.4 kDa protein in PES4-His2 interge	99.01
4ag1_C		84	Fynomer; hydrolase-de novo protein complex, inhibi	99.01
2cud_A		79	SRC-like-adapter; SH3 domain, negative mitogenesis	99.0
1zlm_A		58	Osteoclast stimulating factor 1; beta barrel, sign	99.0
1neg_A		83	Spectrin alpha chain, brain; SH3-domain fold, five	99.0
1sem_A		58	SEM-5; SRC-homology 3 (SH3) domain, peptide-bindin	99.0
1x6g_A		81	Megakaryocyte-associated tyrosine-protein kinase;	99.0
1uj0_A		62	Signal transducing adaptor molecule (SH3 domain an	99.0
2dmo_A		68	Neutrophil cytosol factor 2; SH3 domain, structura	98.99
1x2k_A		68	OSTF1, osteoclast stimulating factor 1; SH3 domain	98.99
1wi7_A		68	SH3-domain kinase binding protein 1; beta barrel,	98.99
2x3w_D		60	Syndapin I, protein kinase C and casein kinase sub	98.99
2ke9_A		83	Caskin-2; SH3 domain, ANK repeat, cytoplasm, phosp	98.99
4e6r_A		58	Cytoplasmic protein NCK2; SH3 domain, protein bind	98.99
2j6f_A		62	CD2-associated protein; metal-binding, immune resp	98.98
1w70_A		60	Neutrophil cytosol factor 4; NADPH oxidase, P40PHO	98.98
2dl3_A		68	Sorbin and SH3 domain-containing protein 1; ponsin	98.98
1wxb_A		68	Epidermal growth factor receptor pathway substrate	98.97
1x2p_A		68	Protein arginine N-methyltransferase 2; SH3 domain	98.97
1csk_A		71	C-SRC SH3 domain; phosphotransferase; 2.50A {Homo	98.97
2dl8_A		72	SLIT-ROBO RHO GTPase-activating protein 2; SH3 dom	98.97
1b07_A		65	Protein (proto-oncogene CRK (CRK)); SH3 domain, in	98.97
2ak5_A		64	RHO guanine nucleotide exchange factor 7; adaptor	98.97
2oi3_A		86	Tyrosine-protein kinase HCK; human HCK, SH3, SRC-t	98.97
2bzy_A		67	CRK-like protein, CRKL SH3C; SH3 domain, dimer, nu	98.96
2m0y_A		74	Dedicator of cytokinesis protein 1; apoptosis; NMR	98.96
1gcq_C		70	VAV proto-oncogene; SH3 domain, protein-protein co	98.96
2gnc_A		60	SLIT-ROBO RHO GTPase-activating protein 1; beta ba	98.96
2kgt_A		72	Tyrosine-protein kinase 6; SH3 domain, SRC kinase,	98.96
1gl5_A		67	Tyrosine-protein kinase TEC; transferase, ATP-bind	98.95
2ydl_A		69	SH3 domain-containing kinase-binding protein 1; si	98.95
2enm_A		77	Sorting nexin-9; SH3-like barrel, protein transpor	98.95
2da9_A		70	SH3-domain kinase binding protein 1; structural ge	98.94
2dnu_A		71	RUH-061, SH3 multiple domains 1; RSGI, structural	98.94
1i07_A		60	Epidermal growth factor receptor kinase substrate	98.94
3reb_B		90	Tyrosine-protein kinase HCK; HIV-1 NEF, SH3 domain	98.94
2jte_A		64	CD2-associated protein; SH3 domain, coiled coil, c	98.93
2b86_A		67	Cytoplasmic protein NCK2; NCK SH3 domain, signalin	98.93
1s1n_A		68	Nephrocystin 1; beta barrel, cell adhesion; NMR {H	98.93
2cre_A		71	HEF-like protein; SH3 domain, SRC homology 3 domai	98.93
2ed0_A		78	ABL interactor 2; coiled coil, cytoskeleton, nucle	98.93
2eyx_A		67	V-CRK sarcoma virus CT10 oncogene homolog isoform	98.92
2dbm_A		73	SH3-containing GRB2-like protein 2; EC 2.3.1.-, SH	98.92
2dm1_A		73	Protein VAV-2; RHO family guanine nucleotide excha	98.92
2djq_A		68	SH3 domain containing ring finger 2; MUS musculus	98.92
4esr_A		69	Jouberin; AHI-1, AHI1, AHI-1 SH3 domain, SH3 domai	98.92
1k1z_A		78	VAV; SH3, proto-oncogene, signaling protein; NMR {	98.92
2vkn_A		70	Protein SSU81; membrane, SH3 domain, transmembrane	98.92
2ege_A		75	Uncharacterized protein KIAA1666; SH3 domain, KIAA	98.92
2o2o_A		92	SH3-domain kinase-binding protein 1; CIN85, protei	98.92
3c0c_A		73	Endophilin-A2; endocytosis, SH3, voltage-gated cal	98.92
2dl7_A		73	KIAA0769 protein; SH3 domain, FCHSD2, structural g	98.91
2egc_A		75	SH3 and PX domain-containing protein 2A; SH3 domai	98.91
1wxt_A		68	Hypothetical protein FLJ21522; SH3 domain, EPS8-re	98.91
2ebp_A		73	SAM and SH3 domain-containing protein 1; proline-g	98.9
2yun_A		79	Nostrin; nitric oxide synthase trafficker, structu	98.9
2dil_A		69	Proline-serine-threonine phosphatase-interacting p	98.9
2csi_A		76	RIM-BP2, RIM binding protein 2; SH3 domain, struct	98.9
3u23_A		65	CD2-associated protein; structural genomics, struc	98.9
2k2m_A		68	EPS8-like protein 1; alternative splicing, coiled	98.9
2k9g_A		73	SH3 domain-containing kinase-binding protein 1; CI	98.9
1wyx_A		69	CRK-associated substrate; beta sheets, cell adhesi	98.9
1x2q_A		88	Signal transducing adapter molecule 2; SH3 domain,	98.9
1bb9_A		115	Amphiphysin 2; transferase, SH3 domain; 2.20A {Rat	98.89
2yt6_A		109	Adult MALE urinary bladder cDNA, riken FULL- lengt	98.89
1y0m_A		61	1-phosphatidylinositol-4,5-bisphosphate phosphodie	98.89
1nm7_A		69	Peroxisomal membrane protein PAS20; yeast, PEX5P,	98.89
2eqi_A		69	Phospholipase C, gamma 2; SH3 domain, PLCG2, struc	98.89
4glm_A		72	Dynamin-binding protein; SH3 domain, DNMBP, struct	98.89
3ulr_B		65	SRC substrate cortactin; SH3, protein-protein inte	98.89
2epd_A		76	RHO GTPase-activating protein 4; SH3 domain, struc	98.89
1aww_A		67	ATK, AMGX1, BPK, bruton'S tyrosine kinase; X-linke	98.88
1ugv_A		72	KIAA0621, olygophrenin-1 like protein; beta barrel	98.88
3ngp_A		62	Spectrin alpha chain, brain; beta barrel, structur	98.88
2jw4_A		72	Cytoplasmic protein NCK1; SH3 domain, phosphorylat	98.88
2ega_A		70	SH3 and PX domain-containing protein 2A; SH3 domai	98.87
2ekh_A		80	SH3 and PX domain-containing protein 2A; SH3 domai	98.87
2rf0_A		89	Mitogen-activated protein kinase kinase kinase 10;	98.87
1z9q_A		79	Neutrophil cytosol factor 4; oxidoreductase activa	98.87
2ct4_A		70	CDC42-interacting protein 4; thyroid receptor inte	98.86
2pqh_A		80	Spectrin alpha chain, brain; SH3 domain, chimera,	98.85
2i0n_A		80	Class VII unconventional myosin; beta-sheet loop,	98.85
2cub_A		88	Cytoplasmic protein NCK1; SH3 domain, NCK1 adaptor	98.85
1ujy_A		76	RHO guanine nucleotide exchange factor 6; structur	98.85
1wx6_A		91	Cytoplasmic protein NCK2; SH3 domain, structural g	98.84
2l0a_A		72	STAM-1, signal transducing adapter molecule 1; str	98.84
1uhc_A		79	KIAA1010 protein; beta barrel, SH3, human cDNA, st	98.84
2v1r_A		80	Peroxisomal membrane protein PAS20; protein transp	98.84
1jqq_A		92	PEX13P, peroxisomal membrane protein PAS20, PAS20P	98.84
1i1j_A		108	Melanoma derived growth regulatory protein; SH3 su	98.83
1x43_A		81	Endophilin B1, SH3 domain GRB2-like protein B1; st	98.83
2d8h_A		80	SH3YL1 protein; SH3 domain, hypothetical protein S	98.82
2ysq_A		81	RHO guanine nucleotide exchange factor 9; SH3 doma	98.82
1uhf_A		69	Intersectin 2; beta barrel, SH3 domain, riken stru	98.82
3eg3_A		63	Proto-oncogene tyrosine-protein kinase ABL1; beta,	98.82
2dl5_A		78	KIAA0769 protein; SH3 domain, FCHSD2, structural g	98.82
3thk_A		73	Spectrin alpha chain, brain; SH3 domain, chimera,	98.81
2yuo_A		78	CIP85, RUN and TBC1 domain containing 3; structura	98.81
1awj_A		77	ITK; transferase, regulatory intramolecular comple	98.81
2yuq_A		85	Tyrosine-protein kinase ITK/TSK; T-cell-specific k	98.81
1gbq_A		74	GRB2; complex (signal transduction/peptide), SH3 d	98.81
2jxb_A		86	T-cell surface glycoprotein CD3 epsilon chain, cyt	98.8
1uff_A		93	Intersectin 2; beta barrel, SH3 domain, endocytosi	98.8
2dbk_A		88	CRK-like protein; structural genomics, NPPSFA, nat	98.8
2rqr_A		119	CED-12 homolog, engulfment and cell motility prote	98.8
1x69_A		79	Cortactin isoform A; SH3 domain, CTTN, oncogene EM	98.8
1j3t_A		74	Intersectin 2; beta barrel, SH3 domain, riken stru	98.79
1wie_A		96	RIM binding protein 2; beta barrel, KIAA0318 prote	98.78
2kym_A		120	BUD emergence protein 1; SH3 domain, BEM1P, SH3-CI	98.78
2kxd_A		73	11-MER peptide, SH3 domain of spectrin alpha CHAI;	98.76
1hsq_A		71	Phospholipase C-gamma (SH3 domain); phosphoric die	98.74
1mv3_A		213	MYC box dependent interacting protein 1; tumor sup	98.74
2csq_A		97	RIM-BP2, RIM binding protein 2; SH3 domain, struct	98.74
2rqv_A		108	BUD emergence protein 1; BEM1P, SH3, CDC42P, cytop	98.72
1udl_A		98	Intersectin 2, KIAA1256; beta barrel, SH3 domain,	98.68
1wxu_A		93	Peroxisomal biogenesis factor 13; SH3 domain, PEX1	98.65
2kbt_A		142	Chimera of proto-oncogene VAV, linker, immunoglobu	98.58
4d8k_A		175	Tyrosine-protein kinase LCK; protein kinases, SH2	98.58
3qwx_X		174	Cell death abnormality protein 2; cell engulfment,	98.51
1gri_A		217	Growth factor bound protein 2; SH2, SH3, signal tr	98.46
1fmk_A		452	C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyros	98.45
3a98_A		184	DOCK2, dedicator of cytokinesis protein 2; protein	98.44
1v1c_A		71	Obscurin; muscle, sarcomere, adapter, myogenesis,	98.39
2dvj_A		230	V-CRK sarcoma virus CT10 oncogene homolog, isoform	98.37
1ng2_A		193	Neutrophil cytosolic factor 1; P47PHOX, autoinhibi	98.37
1qcf_A		454	Haematopoetic cell kinase (HCK); tyrosine kinase-i	98.36
3jv3_A		283	Intersectin-1; SH3 domain, DH domain, guanine nucl	98.34
2h8h_A		535	Proto-oncogene tyrosine-protein kinase SRC; SRC ki	98.31
1tuc_A		63	Alpha-spectrin; capping protein, calcium-binding,	98.27
3pvl_A		655	Myosin VIIA isoform 1; protein complex, novel fold	98.26
1ng2_A		193	Neutrophil cytosolic factor 1; P47PHOX, autoinhibi	98.26
2jmc_A		77	Spectrin alpha chain, brain and P41 peptide chimer	98.2
2eyz_A		304	V-CRK sarcoma virus CT10 oncogene homolog isoform	98.16
2dyb_A		341	Neutrophil cytosol factor 4; P40(PHOX), NADPH oxid	98.15
2eyz_A		304	V-CRK sarcoma virus CT10 oncogene homolog isoform	98.14
1k9a_A		450	Carboxyl-terminal SRC kinase; COOH-terminal SRC ki	98.13
1gri_A		217	Growth factor bound protein 2; SH2, SH3, signal tr	98.04
2lqn_A		303	CRK-like protein; SH2, SH3, V-CRK sarcoma virus CT	97.29
3qwy_A		308	Cell death abnormality protein 2; cell engulfment,	98.02
2pz1_A		466	RHO guanine nucleotide exchange factor 4; helical	98.01
2lqn_A		303	CRK-like protein; SH2, SH3, V-CRK sarcoma virus CT	97.2
3qwy_A		308	Cell death abnormality protein 2; cell engulfment,	97.87
1u3o_A		82	Huntingtin-associated protein-interacting protein;	97.86
1opk_A		495	P150, C-ABL, proto-oncogene tyrosine-protein kinas	97.86
3haj_A		486	Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR,	97.86
1kjw_A		295	Postsynaptic density protein 95; protein-protein i	97.66
1g2b_A		62	Spectrin alpha chain; capping protein, calcium-bin	97.56
2dyb_A		341	Neutrophil cytosol factor 4; P40(PHOX), NADPH oxid	97.18
4dey_A		337	Voltage-dependent L-type calcium channel subunit;	96.76
1ri9_A		102	FYN-binding protein; SH3-like, helically extended,	96.75
1ycs_B		239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	96.63
2xkx_A		721	Disks large homolog 4; structural protein, scaffol	96.6
3kfv_A		308	Tight junction protein ZO-3; structural genomics c	96.43
2gtj_A		96	FYN-binding protein; SH3, redox, signaling protein	95.99
3tsz_A		391	Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffol	95.76
1ug1_A		92	KIAA1010 protein; structural genomics, SH3 domain,	95.65
3shw_A		468	Tight junction protein ZO-1; PDZ-SH3-GUK supramodu	95.24
3ehr_A		222	Osteoclast-stimulating factor 1; beta barrel, heli	94.92
3tvt_A		292	Disks large 1 tumor suppressor protein; DLG, SRC-h	92.66
3pe0_A		283	Plectin; cytoskeleton, plakin, spectrin repeat, SH	88.07

>2de0_X Alpha-(1,6)-fucosyltransferase; FUT8, glycosyltransferase, N-glycan, COR SH3 domain; 2.61A {Homo sapiens}	Back alignment and structure

Probab=100.00  E-value=2.5e-108  Score=877.85  Aligned_cols=462  Identities=45%  Similarity=0.858  Sum_probs=432.2

Q ss_pred             cCCCCCchhHHHHHhhhhcHHHHHHHHHHHHHHHhhcCh----hhHHHHHHhHHHHHHHHHHHHHHHhcccChhhHHHHH
Q psy1897           8 LDLKTNKPYASKHRHILNNIEEFWFYVQSEVRKLKKSNA----VDVDKILDLTSQFKRSLMTDMEELGTLAGGDTLAERQ   83 (473)
Q Consensus         8 ~~~~~~~~~e~l~r~~~~~~~e~~~~~~~~~~~l~~~~~----~~~~~~~~~~~~~~~~l~~d~~~l~~~d~~~~w~~~~   83 (473)
                      ...+|+++||+|||||+|+++|||++|++|++||++...    +.++++++++++|+++|++|++.|+++||+++||.++
T Consensus        42 ~~~~~~~~~e~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~g~~~~r~~~  121 (526)
T 2de0_X           42 TRNGLGKDHEILRRRIENGAKELWFFLQSELKKLKNLEGNELQRHADEFLLDLGHHERSIMTDLYYLSQTDGAGDWREKE  121 (526)
T ss_dssp             ----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHH
T ss_pred             cCCCCChHHHHHHHHHHHhHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHH
Confidence            356899999999999999999999999999999999543    7999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHhhhcCCCCCCCCCEEEEEecCCCchhHHHHHHHHHHHHHHHcCcEEEEecCCCcccCCCcccccccCC
Q psy1897          84 NRRLGELVQARLRHIQNPRDCKTARKVSCQINWACGFGCQLHHVTYCLIIAYATNRTLVLDSTGWNYHSGGWEEMFEPLS  163 (473)
Q Consensus        84 ~~~L~~~vq~~i~~~QNP~dC~~aK~Lv~~~~~~~GfG~~lh~l~~~l~~A~~t~Rtliid~~~~~Y~~~gw~~~F~P~S  163 (473)
                      +.+||++||++|+.+|||+||++||+|+|+++.+|||||+||++++||.+|+++|||||+|+++|.|+.|+|+|||+|+|
T Consensus       122 ~~~lt~~vq~~i~~~QnP~~Cs~aK~Lv~~~~~~~GfGs~lh~l~~~L~~A~~~~Rtliidd~~w~Y~~g~w~~yF~P~s  201 (526)
T 2de0_X          122 AKDLTELVQRRITYLQNPKDCSKAKKLVCNINKGCGYGCQLHHVVYCFMIAYGTQRTLILESQNWRYATGGWETVFRPVS  201 (526)
T ss_dssp             HHHHHHHHHHHHHHHHCCSCGGGSCEEEEECCCSSCHHHHHHHHHHHHHHHHHHTCEEEEECTTCSSCTTCGGGTBCCSC
T ss_pred             HHHHHHHHHHHHHHhcCCCcCCCCCEEEEEecCCCchHHHHHHHHHHHHHHHhhCCEEEEECCCCCcCCCCHHHhhhCcC
Confidence            99999999999999999999999999999998899999999999999999999999999999999998899999999999


Q ss_pred             CcCCCCCCCCcccCCCC--CCCCceEEecceeccCCCCCcccCCCchhhHhhhh--cCChHHHHHHHHhhhhcccCHHHH
Q psy1897         164 QTCRTATEGSVIYWPDH--KPDKQIIKLASQTYSLSGPGFIPRAVPQDIAQELI--HGEPIVWWVGQIVKYIFKPNAKVR  239 (473)
Q Consensus       164 ~~C~~~~~~~~~~W~~~--~~~~~vv~~p~~~~~~~~~~f~p~~vP~~l~~~L~--h~~p~~w~~~q~~~yl~Rp~~~~~  239 (473)
                      ++|.++......+|++.  ..+.++|.+|+++.+++.+.|+|+++|+++.++|.  |++|.+||+||+++|||||+++++
T Consensus       202 ~~C~~~~~~~~~~w~~~~~~~~~~vV~~~~i~~~~~~~~~~~~~~P~~~~~~L~~l~~dp~~w~~~q~~~yl~rP~~~i~  281 (526)
T 2de0_X          202 ETCTDRSGISTGHWSGEVKDKNVQVVELPIVDSLHPRPPYLPLAVPEDLADRLVRVHGDPAVWWVSQFVKYLIRPQPWLE  281 (526)
T ss_dssp             SSCCCCCCSCCCBCCCTTGGGGCSEEEECCGGGCSSCCSCCTTCEEGGGHHHHHHHCSCHHHHHHHHHHHHHTCBCHHHH
T ss_pred             ccccCCCccccCCCCCcccCCCcceEEeeccccccccccccccccchhHHHHHHhccCCcHHHHHHHHHHHHcCCCHHHH
Confidence            99999866677899975  33678999999988888889999999999988887  999999999999999999999999


Q ss_pred             HHHHHHHHHhCCCCCeeeEEEeeCCC-CCCCCCcChhhHHHHHHHHHHHHhcccCCCccEEEEeCCChHHHHHHHhhCCC
Q psy1897         240 AMLSHHAQQIGFSHPVVGVHIRRTDK-GSEAAPHPIHEYMRHVEEYYAQLSLQVNVTERKVYVATDEKGVIMEIRQKYPA  318 (473)
Q Consensus       240 ~~I~~~~~~l~~~~piVGVHIRrgDK-~~E~~~~~~~~Ym~~v~~~~~~~~~~~~~~~~~IfLATDdp~v~~e~k~~yp~  318 (473)
                      ++|++.+++++|+.|+|||||||||| ..|+.++|+++||++|++|++.+........++||||||||+|+++++++||+
T Consensus       282 ~~I~~~~~~l~~~~piVGVHIRrGDk~~~E~~~~~~~~Y~~~v~~~~~~l~~~~~~~~~~ifLATDDp~v~~e~k~~~p~  361 (526)
T 2de0_X          282 KEIEEATKKLGFKHPVIGVHVRRTDKVGTEAAFHPIEEYMVHVEEHFQLLARRMQVDKKRVYLATDDPSLLKEAKTKYPN  361 (526)
T ss_dssp             HHHHHHHHHHTCCSSEEEEEECCC-----CCCSCSHHHHHHHHHHHHHHHHTTSCCSSCEEEEEESCHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHhCCCCCEEEEEEeCCCCCccccccCCHHHHHHHHHHHHHHHHhhcCCCCCeEEEEcCCHHHHHHHHHhCCC
Confidence            99999999999999999999999999 57999999999999999999987765567889999999999999999999999


Q ss_pred             cEEEcCCcccccccccccCChhhHHHHHHHHHHHhCCCeeeecCCChHHHHHHHHhccCCCCCCCCeeeccccccccccc
Q psy1897         319 YTILGDASTVEAASSDRRYSTAGLLGIITDLYFLSHSDYLVCTFSSQICRIAYELLNTDHRDASLNFKSLDDIWFFAGQR  398 (473)
Q Consensus       319 ~~~~~~~~~s~~a~~~~R~s~~~l~~~l~Dl~lLs~cD~~VgT~sSn~~rla~eLr~~~~~d~~~~~~SLD~~y~~~g~~  398 (473)
                      |.|++++.+..+++...|.+.+++.++++||++||+||+||||+||||||++++||++..+++...|.|||+.|+|+||.
T Consensus       362 ~~~~~d~~~~~~a~~~~R~s~~~l~~~l~DL~lLs~cd~~Vgt~sS~~srla~~l~~~~~~~~~~~~~SLD~~~~~~Gq~  441 (526)
T 2de0_X          362 YEFISDNSISWSAGLHNRYTENSLRGVILDIHFLSQADFLVCTFSSQVCRVAYEIMQTLHPDASANFHSLDDIYYFGGQN  441 (526)
T ss_dssp             SEEECCCCSSCSSGGGGGTCCTHHHHHHHHHHHHHHSSEEEECTTSHHHHHHHHHHTTSSSCCTTCEEESSCCSCCTTCC
T ss_pred             CEEecCcccccccCccccccHHHHHHHHHHHHHHhcCCeeecCCCCHHHHHHHHHhcCcCccccccccCCcccccccccc
Confidence            99999888777777888999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccchhhhccCCCCCCCccccCCCCeEeeccccccceeeeEecCCCeeeeeeCcceeecccCCCCCCCCCCC
Q psy1897         399 DNIQLAVLDHTPQTADQIELRVGDEVKPAGNHWDGFSRGTNLRTNRHGLYPSFKVISRVETYKFPTYPEVK  469 (473)
Q Consensus       399 ~~~~~a~~~~~~~~~~el~l~~GD~i~~~~~~~~G~~~g~n~rt~~~Gl~P~~~v~~~~~~~~~p~~~~~~  469 (473)
                      ...++|+|+|.|++++||+|++||+|.|.+++++||++|+|++||++|+||++||+++....++|.|+.++
T Consensus       442 ~~~~~aly~y~a~~~dELs~~~GD~i~v~~~~~~gW~~G~~~~~g~~G~fPsnyV~~~~~~~~~p~y~~~~  512 (526)
T 2de0_X          442 AHNQIAIYAHQPRTADEIPMEPGDIIGVAGNHWDGYSKGVNRKLGRTGLYPSYKVREKIETVKYPTYPEAE  512 (526)
T ss_dssp             CCEEEECSCBCCSSTTBCCBCTTCEEEEEEECSSSEEEEEETTTTEEEEEEGGGEEECCCEECCCCCCC--
T ss_pred             ccceEEeecCCCCCCCcCCcCCCCEEEEccccCCCeeEEEeCCCCCEEEECchheeEcccCCCCCChhhhh
Confidence            99999999999999999999999999999999999999999999999999999999999999999998875

PyMOL of 2de0

>2hhc_A NODZ, nodulation fucosyltransferase NODZ; glycosyltransferase; 1.54A {Bradyrhizobium SP} PDB: 2hlh_A 2ocx_A* 3siw_A* 3six_A*	Back alignment and structure

>2lj0_A Sorbin and SH3 domain-containing protein 1; R85FL, ponsin, CAP, signaling protein; NMR {Homo sapiens} PDB: 2lj1_A	Back alignment and structure

>2fpe_A C-JUN-amino-terminal kinase interacting protein 1; SRC-homology 3 (SH3) domain, all beta structure, signaling protein; HET: P6G; 1.75A {Rattus norvegicus} PDB: 2fpd_A*	Back alignment and structure

>2fpf_A C-JUN-amino-terminal kinase interacting protein 1; scaffold protein 1, islet-brain-1, IB-1, mitogen-activated P kinase 8-interacting protein 1; 3.00A {Rattus norvegicus}	Back alignment and structure

>3zy2_A Putative GDP-fucose protein O-fucosyltransferase; glycosyltransferase, GT-B, catalytic mechanism,; HET: GDP; 1.54A {Caenorhabditis elegans} PDB: 3zy3_A* 3zy4_A* 3zy5_A* 3zy6_A*	Back alignment and structure

>2lx7_A GAS-7, growth arrest-specific protein 7; structural genomics, northeast structural genomics consortiu target HR8574A, PSI-biology; NMR {Homo sapiens}	Back alignment and structure

>1jo8_A ABP1P, actin binding protein; SH3 domain actin-binding-protein, structural protein; 1.30A {Saccharomyces cerevisiae} SCOP: b.34.2.1 PDB: 2k3b_A 2rpn_A	Back alignment and structure

>2j05_A RAS GTPase-activating protein 1; GTPase activation, SH3 domain, SH2 domain, SRC homology 3, RAS signaling pathway, proto- oncogene, phosphorylation; 1.5A {Homo sapiens} PDB: 2j06_A	Back alignment and structure

>2ct3_A Vinexin; SH3 domian, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}	Back alignment and structure

>2gqi_A RAS GTPase-activating protein 1; GAP, RAS P21 protein activator, P120GAP, rasgap, structural genomics, NPPSFA; NMR {Homo sapiens}	Back alignment and structure

>4ap5_A GDP-fucose protein O-fucosyltransferase 2; GT-B, GT68; HET: NAG; 3.00A {Homo sapiens} PDB: 4ap6_A*	Back alignment and structure

>2cuc_A SH3 domain containing ring finger 2; structural genomics, ring finger 2 containing protein, NPPSFA; NMR {Mus musculus}	Back alignment and structure

>1yn8_A NBP2, NAP1-binding protein 2; SH3 domain, unknown function; 1.70A {Saccharomyces cerevisiae}	Back alignment and structure

>2ecz_A Sorbin and SH3 domain-containing protein 1; glycoprotein, membrane, nuclear protein, phosphorylation, polymorphism, transport, structural genomics; NMR {Homo sapiens}	Back alignment and structure

>1zuy_A Myosin-5 isoform; SH3 domain, contractIle protein; 1.39A {Saccharomyces cerevisiae} PDB: 1yp5_A	Back alignment and structure

>2lcs_A NAP1-binding protein 2; adaptor, transferase, signaling protein; NMR {Saccharomyces cerevisiae}	Back alignment and structure

>2e5k_A Suppressor of T-cell receptor signaling 1; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}	Back alignment and structure

>1spk_A RSGI RUH-010, riken cDNA 1300006M19; structural genomics, SH3 domain, five-stranded barrel, mouse cDNA; NMR {Mus musculus} SCOP: b.34.2.1	Back alignment and structure

>3o5z_A Phosphatidylinositol 3-kinase regulatory subunit; SRC homology 3 domain, protein binding; 2.01A {Homo sapiens} SCOP: b.34.2.0 PDB: 2kt1_A	Back alignment and structure

>4f14_A Nebulette; SH3 domain, heart muscle, actin-binding protein-peptide COMP; 1.20A {Homo sapiens} PDB: 1ark_A 1neb_A 3i35_A	Back alignment and structure

>3rnj_A Brain-specific angiogenesis inhibitor 1-associate 2; structural genomics, structural genomics consortium, SGC, BE barrel; HET: EDT; 1.50A {Homo sapiens} SCOP: b.34.2.1	Back alignment and structure

>2v1q_A SLA1, cytoskeleton assembly control protein SLA1; structural genomics, phosphorylation, structural protein, yeast, SH3 domain; 1.2A {Saccharomyces cerevisiae} PDB: 1z9z_A	Back alignment and structure

>2o9s_A Ponsin; SH3 domain, signaling protein; 0.83A {Homo sapiens} PDB: 2o31_A 2o9v_A 2o2w_A	Back alignment and structure

>2kxc_A Brain-specific angiogenesis inhibitor 1-associate 2-like protein 1; IRTKS-SH3, espfu, complex structure, protein binding; NMR {Homo sapiens}	Back alignment and structure

>2iim_A Proto-oncogene tyrosine-protein kinase LCK; beta-barrels, signaling protein; HET: PG4; 1.00A {Homo sapiens} SCOP: b.34.2.1 PDB: 1h92_A 1kik_A	Back alignment and structure

>1ruw_A Myosin-3 isoform, MYO3; SH3 domain, yeast, high-throughput, structural genomics, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2btt_A 1va7_A	Back alignment and structure

>3h0h_A Proto-oncogene tyrosine-protein kinase FYN; beta barrel, transferase; HET: PG4; 1.76A {Homo sapiens} SCOP: b.34.2.1 PDB: 3h0i_A 3h0f_A*	Back alignment and structure

>2g6f_X RHO guanine nucleotide exchange factor 7; SH3 domain, peptide interaction, signaling protein; HET: NCO; 0.92A {Rattus norvegicus} PDB: 2df6_A* 2p4r_A 2esw_A	Back alignment and structure

>1x6b_A RHO guanine exchange factor (GEF) 16; SH3 domain, neuroblastoma, structural genomics, NPPSFA; NMR {Homo sapiens}	Back alignment and structure

>2jt4_A Cytoskeleton assembly control protein SLA1; endocytosis, SH3, actin-binding, cytoplasm, cytoskeleton, phosphorylation, SH3 domain, DNA damage, DNA repair, nucleus; NMR {Saccharomyces cerevisiae}	Back alignment and structure

>1tg0_A BBC1 protein, myosin tail region-interacting protein MTI1; yeast, SH3 domain, structural genomics, contractIle protein; 0.97A {Saccharomyces cerevisiae} PDB: 1zuk_A 1wdx_A	Back alignment and structure

>2xmf_A Myosin 1E SH3; motor protein, SH3 domain; HET: DIA; 1.50A {Mus musculus}	Back alignment and structure

>3cqt_A P59-FYN, proto-oncogene tyrosine-protein kinase FYN; beta barrel, ATP-binding, developmental protein, lipoprotein, manganese, metal-binding; 1.60A {Gallus gallus} PDB: 2l2p_A	Back alignment and structure

>2yup_A Vinexin; sorbin and SH3 domain-containing protein 3, SH3-containing adapter molecule 1, SCAM-1, structural genomics, NPPSFA; NMR {Homo sapiens}	Back alignment and structure

>1zuu_A BZZ1 protein; SH3 domain, unknown function; 0.97A {Saccharomyces cerevisiae} SCOP: b.34.2.1	Back alignment and structure

>1zx6_A YPR154WP; SH3 domain, protein binding; 1.60A {Saccharomyces cerevisiae} PDB: 1ynz_A	Back alignment and structure

>2bz8_A SH3-domain kinase binding protein 1; SH3 domain, CIN85 adaptor protein, CBL ubiquitin ligase; 2.0A {Homo sapiens}	Back alignment and structure

>2ed1_A 130 kDa phosphatidylinositol 4,5-biphosphate- dependent ARF1 GTPase-activating protein...; GTPase activation, membrane, metal-binding, SH3 domain; NMR {Homo sapiens} PDB: 2rqt_A 2rqu_A	Back alignment and structure

>1ue9_A Intersectin 2; beta barrel, SH3 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, endocytosis/exocytosis complex; NMR {Homo sapiens} SCOP: b.34.2.1	Back alignment and structure

>2dl4_A Protein STAC; SH3 domain, STAC protein, SRC homology 3, cysteine-rich domain protein, structural genomics, NPPSFA; NMR {Homo sapiens}	Back alignment and structure

>2oaw_A Spectrin alpha chain, brain; SH3 domain, chimera, structural protein; 1.90A {Gallus gallus} PDB: 2rot_A 2rmo_A 2kr3_A	Back alignment and structure

>1cka_A C-CRK N-terminal SH3 domain; complex (oncogene protein/peptide); 1.50A {Mus musculus} SCOP: b.34.2.1 PDB: 1ckb_A 1m3c_A 1m30_A 1m3b_A 1m3a_A	Back alignment and structure

>2vwf_A Growth factor receptor-bound protein 2; polymorphism, phosphoprotein, golgi apparatus, alternative splicing, HOST-virus interaction, SH3C, signaling; 1.58A {Homo sapiens} PDB: 2w0z_A 1gcq_A 1gfc_A 1gfd_A 1io6_A 2vvk_A	Back alignment and structure

>3i5r_A Phosphatidylinositol 3-kinase regulatory subunit alpha; SH3 domain, peptide complex, alternative splicing, disease mutation, HOST-virus interaction, phosphoprotein, polymorphism; 1.70A {Homo sapiens} SCOP: b.34.2.1 PDB: 3i5s_A 1pht_A 1pnj_A 2pni_A 1pks_A 1pkt_A	Back alignment and structure

>2d8j_A FYN-related kinase; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}	Back alignment and structure

>1k4u_S Phagocyte NADPH oxidase subunit P67PHOX; SH3-peptide complex, helix-turn-helix, hormone/growth factor complex; NMR {Homo sapiens} SCOP: b.34.2.1	Back alignment and structure

>1uti_A GRB2-related adaptor protein 2; signaling protein regulator, SH3 domain/complex, adaptor protein (MONA); 1.5A {Mus musculus} SCOP: b.34.2.1 PDB: 1h3h_A 1oeb_A 2w10_A 2d0n_A	Back alignment and structure

>2fei_A CD2-associated protein; CMS SH3 domain, structural protein; NMR {Homo sapiens}	Back alignment and structure

>2dlp_A KIAA1783 protein; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}	Back alignment and structure

>2a28_A BZZ1 protein; SH3 domain, signaling protein; 1.07A {Saccharomyces cerevisiae}	Back alignment and structure

>1u5s_A Cytoplasmic protein NCK2; protein-protein complex, beta barrel, beta sheet, zinc finger, metal binding protein; NMR {Homo sapiens} SCOP: b.34.2.1 PDB: 2fry_A	Back alignment and structure

>2ew3_A SH3-containing GRB2-like protein 3; SH3GL3, solution structure, signaling protein; NMR {Homo sapiens}	Back alignment and structure

>2nwm_A Vinexin; cell adhesion; NMR {Homo sapiens}	Back alignment and structure

>2drm_A Acanthamoeba myosin IB; SH3 domain, contractIle protein; 1.35A {Acanthamoeba} PDB: 2drk_A	Back alignment and structure

>1oot_A Hypothetical 40.4 kDa protein in PES4-His2 intergenic region; SH3 domain, sturctural genomics, structural genomics; 1.39A {Saccharomyces cerevisiae} SCOP: b.34.2.1 PDB: 1ssh_A 2a08_A	Back alignment and structure

>4ag1_C Fynomer; hydrolase-de novo protein complex, inhibitor, serine proteas; 1.40A {Synthetic construct} PDB: 4afz_C 4ag2_C* 4afq_C* 4afs_C 4afu_C 1azg_B 1nyf_A 1nyg_A 1a0n_B 3ua7_A 3ua6_A 1fyn_A 1m27_C* 1shf_A 1zbj_A 1efn_A 1avz_C 1nlo_C* 1nlp_C* 1qwe_A ...	Back alignment and structure

>2cud_A SRC-like-adapter; SH3 domain, negative mitogenesis regulator, structural genomics, NPPSFA; NMR {Homo sapiens}	Back alignment and structure

>1zlm_A Osteoclast stimulating factor 1; beta barrel, signaling protein; 1.07A {Homo sapiens}	Back alignment and structure

>1neg_A Spectrin alpha chain, brain; SH3-domain fold, five antiparallel beta sheets, structural protein; 2.30A {Gallus gallus} SCOP: b.34.2.1	Back alignment and structure

>1sem_A SEM-5; SRC-homology 3 (SH3) domain, peptide-binding protein; 2.00A {Caenorhabditis elegans} SCOP: b.34.2.1 PDB: 2sem_A 3sem_A 1k76_A 1kfz_A	Back alignment and structure

>1x6g_A Megakaryocyte-associated tyrosine-protein kinase; MATK, CTK, HYL, SH3 domain, structural genomics, NPPSFA; NMR {Homo sapiens}	Back alignment and structure

>1uj0_A Signal transducing adaptor molecule (SH3 domain and ITAM motif) 2; STAM, SH3, GRB2, GADS, PXXP, HRS, endocytosis, early endosome, signaling protein/signaling protein complex; 1.70A {Mus musculus} SCOP: b.34.2.1	Back alignment and structure

>2dmo_A Neutrophil cytosol factor 2; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}	Back alignment and structure

>1x2k_A OSTF1, osteoclast stimulating factor 1; SH3 domain, human osteoclast stimulating factor 1, structural genomics, NPPSFA; NMR {Homo sapiens}	Back alignment and structure

>1wi7_A SH3-domain kinase binding protein 1; beta barrel, SH3KBP1, RUK, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus}	Back alignment and structure

>2x3w_D Syndapin I, protein kinase C and casein kinase substrate in N protein 1; endocytosis, N-WAsp, dynamin, pacsin I, transferase; 2.64A {Mus musculus} PDB: 2x3x_D	Back alignment and structure

>2ke9_A Caskin-2; SH3 domain, ANK repeat, cytoplasm, phosphoprotein, protein binding; NMR {Homo sapiens}	Back alignment and structure

>4e6r_A Cytoplasmic protein NCK2; SH3 domain, protein binding, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; HET: MLY; 2.20A {Homo sapiens} PDB: 2frw_A 2js0_A	Back alignment and structure

>2j6f_A CD2-associated protein; metal-binding, immune response, SH3, SH2 domain, SH3 zinc-finger, SH3- binding, UBL conjugation pathway; 1.7A {Homo sapiens} PDB: 2j6k_A 2j6o_A 2j7i_A 2krm_A	Back alignment and structure

>1w70_A Neutrophil cytosol factor 4; NADPH oxidase, P40PHOX, P47PHOX, SH3 domain, polyproline; 1.46A {Homo sapiens} PDB: 1w6x_A	Back alignment and structure

>2dl3_A Sorbin and SH3 domain-containing protein 1; ponsin, C-CBL-associated protein, CAP, SH3 domain protein 5 SH3P12, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dlm_A	Back alignment and structure

>1wxb_A Epidermal growth factor receptor pathway substrate 8-like protein; SH3, EPS8, EPS8L2, structural genomics, NPPSFA; NMR {Homo sapiens}	Back alignment and structure

>1x2p_A Protein arginine N-methyltransferase 2; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}	Back alignment and structure

>1csk_A C-SRC SH3 domain; phosphotransferase; 2.50A {Homo sapiens} SCOP: b.34.2.1	Back alignment and structure

>2dl8_A SLIT-ROBO RHO GTPase-activating protein 2; SH3 domain, formin-binding protein 2, structural genomics, NPPSFA; NMR {Homo sapiens}	Back alignment and structure

>1b07_A Protein (proto-oncogene CRK (CRK)); SH3 domain, inhibitors, peptoids, protein-protein recognition, proline-rich motifs, signal transduction; 2.50A {Mus musculus} SCOP: b.34.2.1	Back alignment and structure

>2ak5_A RHO guanine nucleotide exchange factor 7; adaptor proteins, CIN85, PIX/COOL, protein-protein interaction, X-RAY, endocytosis; 1.85A {Rattus norvegicus} PDB: 1zsg_A	Back alignment and structure

>2oi3_A Tyrosine-protein kinase HCK; human HCK, SH3, SRC-type tyrosine kinase, transferase; NMR {Homo sapiens} PDB: 2oj2_A 4hck_A 5hck_A	Back alignment and structure

>2bzy_A CRK-like protein, CRKL SH3C; SH3 domain, dimer, nuclear export; 2.5A {Homo sapiens} PDB: 2bzx_A	Back alignment and structure

>2m0y_A Dedicator of cytokinesis protein 1; apoptosis; NMR {Mus musculus}	Back alignment and structure

>1gcq_C VAV proto-oncogene; SH3 domain, protein-protein complex, GRB2,VAV, signaling protein/signaling protein complex; 1.68A {Mus musculus} SCOP: b.34.2.1 PDB: 1gcp_A	Back alignment and structure

>2gnc_A SLIT-ROBO RHO GTPase-activating protein 1; beta barrel, signaling protein; 1.80A {Mus musculus}	Back alignment and structure

>2kgt_A Tyrosine-protein kinase 6; SH3 domain, SRC kinase, PTK6, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein, polymorphism; NMR {Homo sapiens}	Back alignment and structure

>1gl5_A Tyrosine-protein kinase TEC; transferase, ATP-binding, SH3 domain, phosphorylation; NMR {Mus musculus} SCOP: b.34.2.1	Back alignment and structure

>2ydl_A SH3 domain-containing kinase-binding protein 1; signaling protein; 2.05A {Homo sapiens} PDB: 2k6d_A	Back alignment and structure

>2enm_A Sorting nexin-9; SH3-like barrel, protein transport, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}	Back alignment and structure

>2da9_A SH3-domain kinase binding protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}	Back alignment and structure

>2dnu_A RUH-061, SH3 multiple domains 1; RSGI, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}	Back alignment and structure

>1i07_A Epidermal growth factor receptor kinase substrate EPS8; hormone/growth factor; 1.80A {Mus musculus} SCOP: b.34.2.1 PDB: 1aoj_A 1i0c_A	Back alignment and structure

>3reb_B Tyrosine-protein kinase HCK; HIV-1 NEF, SH3 domain binding, signaling, HCK SH3 domain, PR binding; 3.45A {Homo sapiens}	Back alignment and structure

>2jte_A CD2-associated protein; SH3 domain, coiled coil, cytoplasm, phosphorylation, SH3-binding, signaling protein; NMR {Mus musculus} PDB: 2kro_A	Back alignment and structure

>2b86_A Cytoplasmic protein NCK2; NCK SH3 domain, signaling protein; NMR {Homo sapiens} PDB: 2js2_A	Back alignment and structure

>1s1n_A Nephrocystin 1; beta barrel, cell adhesion; NMR {Homo sapiens}	Back alignment and structure

>2cre_A HEF-like protein; SH3 domain, SRC homology 3 domain, beta barrel, structural genomics, NPPSFA; NMR {Homo sapiens}	Back alignment and structure

>2ed0_A ABL interactor 2; coiled coil, cytoskeleton, nuclear protein, phosphorylation, SH3 domain, structural genomics, NPPSFA; NMR {Homo sapiens}	Back alignment and structure

>2eyx_A V-CRK sarcoma virus CT10 oncogene homolog isoform A; SH3, signaling protein; NMR {Homo sapiens}	Back alignment and structure

>2dbm_A SH3-containing GRB2-like protein 2; EC 2.3.1.-, SH3 domain protein 2A, endophilin 1, EEN-B1, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2knb_B 3iql_A	Back alignment and structure

>2dm1_A Protein VAV-2; RHO family guanine nucleotide exchange factor, structural genomics, NPPSFA; NMR {Homo sapiens}	Back alignment and structure

>2djq_A SH3 domain containing ring finger 2; MUS musculus 0 DAY neonate head cDNA, riken FULL-length enriched library, clone:4831401O22, structural genomics; NMR {Mus musculus}	Back alignment and structure

>4esr_A Jouberin; AHI-1, AHI1, AHI-1 SH3 domain, SH3 domain, dynamin-2, protei binding, chronic myeloid leukemia; 1.53A {Homo sapiens}	Back alignment and structure

>1k1z_A VAV; SH3, proto-oncogene, signaling protein; NMR {Mus musculus} SCOP: b.34.2.1	Back alignment and structure

>2vkn_A Protein SSU81; membrane, SH3 domain, transmembrane, membrane; 2.05A {Saccharomyces cerevisiae}	Back alignment and structure

>2ege_A Uncharacterized protein KIAA1666; SH3 domain, KIAA1666 protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}	Back alignment and structure

>2o2o_A SH3-domain kinase-binding protein 1; CIN85, protein binding; NMR {Homo sapiens}	Back alignment and structure

>3c0c_A Endophilin-A2; endocytosis, SH3, voltage-gated calcium channel, endosome, L binding, membrane, phosphoprotein, proto-oncogene, SH3 DOMA; 1.70A {Rattus norvegicus}	Back alignment and structure

>2dl7_A KIAA0769 protein; SH3 domain, FCHSD2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}	Back alignment and structure

>2egc_A SH3 and PX domain-containing protein 2A; SH3 domain, KIAA0418 protein, SH3MD1, SH3 multiple domains 1, structural genomics, NPPSFA; NMR {Homo sapiens}	Back alignment and structure

>1wxt_A Hypothetical protein FLJ21522; SH3 domain, EPS8-related protein 3, protein-protein interaction, structural genomics; NMR {Homo sapiens}	Back alignment and structure

>2ebp_A SAM and SH3 domain-containing protein 1; proline-glutamate repeat-containing protein, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2kea_A	Back alignment and structure

>2yun_A Nostrin; nitric oxide synthase trafficker, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}	Back alignment and structure

>2dil_A Proline-serine-threonine phosphatase-interacting protein 1; SH3 domain, PEST phosphatase-interacting protein 1, CD2- binding protein 1; NMR {Homo sapiens}	Back alignment and structure

>2csi_A RIM-BP2, RIM binding protein 2; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}	Back alignment and structure

>3u23_A CD2-associated protein; structural genomics, structural genomics consortium, SGC, BE barrel, adaptor protein, protein binding; 1.11A {Homo sapiens} PDB: 2krn_A	Back alignment and structure

>2k2m_A EPS8-like protein 1; alternative splicing, coiled coil, cytoplasm, SH3 domain, signaling protein; NMR {Homo sapiens} PDB: 2rol_A	Back alignment and structure

>2k9g_A SH3 domain-containing kinase-binding protein 1; CIN85, adaptor protein, downregulation, CBL, apoptosis, junction, cytoplasmic vesicle, cytoskeleton; NMR {Homo sapiens}	Back alignment and structure

>1wyx_A CRK-associated substrate; beta sheets, cell adhesion; 1.14A {Homo sapiens}	Back alignment and structure

>1x2q_A Signal transducing adapter molecule 2; SH3 domain, signal transducing adaptor molecule, structural genomics, NPPSFA; NMR {Homo sapiens}	Back alignment and structure

>1bb9_A Amphiphysin 2; transferase, SH3 domain; 2.20A {Rattus norvegicus} SCOP: b.34.2.1 PDB: 1muz_A 1mv0_B	Back alignment and structure

>2yt6_A Adult MALE urinary bladder cDNA, riken FULL- length enriched library, clone:9530076O17...; SH3_1 domain; NMR {Mus musculus}	Back alignment and structure

>1y0m_A 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase gamma 1; SH3 domain, hydrolase; 1.20A {Rattus norvegicus} PDB: 1ywp_A 1ywo_A	Back alignment and structure

>1nm7_A Peroxisomal membrane protein PAS20; yeast, PEX5P, PEX14P, PEX13P, import machine, SH3 domain, protein transport; NMR {Saccharomyces cerevisiae} SCOP: b.34.2.1	Back alignment and structure

>2eqi_A Phospholipase C, gamma 2; SH3 domain, PLCG2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}	Back alignment and structure

>4glm_A Dynamin-binding protein; SH3 domain, DNMBP, structural genomics, structural genomics consortium, SGC, SRC homology 3 domains, cell junctions; 1.90A {Homo sapiens}	Back alignment and structure

>3ulr_B SRC substrate cortactin; SH3, protein-protein interaction, hydrolase, protein binding; 1.65A {Mus musculus} SCOP: b.34.2.0 PDB: 2d1x_A	Back alignment and structure

>2epd_A RHO GTPase-activating protein 4; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}	Back alignment and structure

>1aww_A ATK, AMGX1, BPK, bruton'S tyrosine kinase; X-linked agammaglobulinemia, XLA, BTK, SH3 domain, transferase; NMR {Homo sapiens} SCOP: b.34.2.1 PDB: 1awx_A 1qly_A	Back alignment and structure

>1ugv_A KIAA0621, olygophrenin-1 like protein; beta barrel, GRAF protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.2.1	Back alignment and structure

>3ngp_A Spectrin alpha chain, brain; beta barrel, structural protein; 1.08A {Gallus gallus} PDB: 1e7o_A 1e6g_A 1e6h_A 1uue_A 1h8k_A 2lj3_A 1aey_A 1m8m_A 1shg_A 1u06_A 2nuz_A 2cdt_A 1hd3_A 2f2v_A 2f2w_A 2jm8_A 2jm9_A 2jma_A 3m0r_A 3m0p_A ...	Back alignment and structure

>2jw4_A Cytoplasmic protein NCK1; SH3 domain, phosphorylation, SH2 domain, signaling protein; NMR {Homo sapiens}	Back alignment and structure

>2ega_A SH3 and PX domain-containing protein 2A; SH3 domain, KIAA0418 protein, SH3MD1, SH3 multiple domains 1, structural genomics, NPPSFA; NMR {Homo sapiens}	Back alignment and structure

>2ekh_A SH3 and PX domain-containing protein 2A; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}	Back alignment and structure

>2rf0_A Mitogen-activated protein kinase kinase kinase 10; MAP3K10, MLK2, SH3 domain, TKL kinase, MKN28, structural GEN structural genomics consortium, SGC; 2.00A {Homo sapiens}	Back alignment and structure

>1z9q_A Neutrophil cytosol factor 4; oxidoreductase activator; NMR {Homo sapiens}	Back alignment and structure

>2ct4_A CDC42-interacting protein 4; thyroid receptor interacting protein 10, SH3 domain, structural genomics, NPPSFA; NMR {Homo sapiens}	Back alignment and structure

>2i0n_A Class VII unconventional myosin; beta-sheet loop, structural protein; NMR {Dictyostelium discoideum}	Back alignment and structure

>2cub_A Cytoplasmic protein NCK1; SH3 domain, NCK1 adaptor, tyrosine kinase, signal transduction, structural genomics, NPPSFA; NMR {Homo sapiens}	Back alignment and structure

>1ujy_A RHO guanine nucleotide exchange factor 6; structural genomics, SH3 domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.2.1	Back alignment and structure

>1wx6_A Cytoplasmic protein NCK2; SH3 domain, structural genomics, signal transduction, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens}	Back alignment and structure

>2l0a_A STAM-1, signal transducing adapter molecule 1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Homo sapiens}	Back alignment and structure

>1uhc_A KIAA1010 protein; beta barrel, SH3, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.34.2.1	Back alignment and structure

>2v1r_A Peroxisomal membrane protein PAS20; protein transport, translocation, transmembrane, peptide COM structural genomics, peroxisome; 2.1A {Saccharomyces cerevisiae} SCOP: b.34.2.1	Back alignment and structure

>1jqq_A PEX13P, peroxisomal membrane protein PAS20, PAS20P, roxin-13; compact beta-barrel of five anti-parrallel beta-strands; 2.65A {Saccharomyces cerevisiae} SCOP: b.34.2.1 PDB: 1n5z_A	Back alignment and structure

>1i1j_A Melanoma derived growth regulatory protein; SH3 subdomain, hormone/growth factor complex; 1.39A {Homo sapiens} SCOP: b.34.2.1 PDB: 1k0x_A 1hjd_A	Back alignment and structure

>1x43_A Endophilin B1, SH3 domain GRB2-like protein B1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}	Back alignment and structure

>2d8h_A SH3YL1 protein; SH3 domain, hypothetical protein SH3YL1, structural genomics, NPPSFA; NMR {Homo sapiens}	Back alignment and structure

>2ysq_A RHO guanine nucleotide exchange factor 9; SH3 domain, CDC42 guanine nucleotide exchange factor (GEF) 9, structural genomics, NPPSFA; NMR {Homo sapiens}	Back alignment and structure

>1uhf_A Intersectin 2; beta barrel, SH3 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, signaling protein; NMR {Homo sapiens} SCOP: b.34.2.1	Back alignment and structure

>3eg3_A Proto-oncogene tyrosine-protein kinase ABL1; beta, ATP-binding, cell adhesion, cytoskeleton, LIPO magnesium, manganese, metal-binding, myristate; 1.40A {Homo sapiens} PDB: 3egu_A 3eg0_A 3eg2_A 3eg1_A 1abo_A 1abq_A 1ju5_C* 2o88_A 1bbz_A 1awo_A	Back alignment and structure

>2dl5_A KIAA0769 protein; SH3 domain, FCHSD2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}	Back alignment and structure

>3thk_A Spectrin alpha chain, brain; SH3 domain, chimera, structural protein; 1.70A {Rattus norvegicus} SCOP: b.34.2.1	Back alignment and structure

>2yuo_A CIP85, RUN and TBC1 domain containing 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}	Back alignment and structure

>1awj_A ITK; transferase, regulatory intramolecular complex, kinase; NMR {Mus musculus} SCOP: b.34.2.1 PDB: 2rn8_A 2rna_A 2k79_A 2k7a_A	Back alignment and structure

>2yuq_A Tyrosine-protein kinase ITK/TSK; T-cell-specific kinase, tyrosine-protein kinase LYK, kinase EMT, structural genomics, NPPSFA; NMR {Homo sapiens}	Back alignment and structure

>1gbq_A GRB2; complex (signal transduction/peptide), SH3 domain; NMR {Mus musculus} SCOP: b.34.2.1 PDB: 1gbr_A 2gbq_A 3gbq_A 4gbq_A	Back alignment and structure

>2jxb_A T-cell surface glycoprotein CD3 epsilon chain, cytoplasmic protein NCK2; T-cell receptor, SH3 domain, immunology, SH2 domain; NMR {Homo sapiens}	Back alignment and structure

>1uff_A Intersectin 2; beta barrel, SH3 domain, endocytosis, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.2.1	Back alignment and structure

>2dbk_A CRK-like protein; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}	Back alignment and structure

>2rqr_A CED-12 homolog, engulfment and cell motility protein 1, linker, D of cytokinesis protein 2; KIAA0209, KIAA0281, apoptosis, membrane, phagocytosis; NMR {Homo sapiens}	Back alignment and structure

>1x69_A Cortactin isoform A; SH3 domain, CTTN, oncogene EMS1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}	Back alignment and structure

>1j3t_A Intersectin 2; beta barrel, SH3 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, endocytosis/exocytosis complex; NMR {Homo sapiens} SCOP: b.34.2.1	Back alignment and structure

>1wie_A RIM binding protein 2; beta barrel, KIAA0318 protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.34.2.1	Back alignment and structure

>2kym_A BUD emergence protein 1; SH3 domain, BEM1P, SH3-CI, STE20P PRR, CDC42P-interacting, S signaling protein; NMR {Lodderomyces elongisporus}	Back alignment and structure

>2kxd_A 11-MER peptide, SH3 domain of spectrin alpha CHAI; alpha spectrin SH3 domain, SPC-S19P20S circular permutant, S protein; NMR {Synthetic}	Back alignment and structure

>1hsq_A Phospholipase C-gamma (SH3 domain); phosphoric diester hydrolase; NMR {Homo sapiens} SCOP: b.34.2.1 PDB: 2hsp_A	Back alignment and structure

>1mv3_A MYC box dependent interacting protein 1; tumor suppressor, endocytosis/exocytosis complex; NMR {Homo sapiens} SCOP: b.34.2.1	Back alignment and structure

>2csq_A RIM-BP2, RIM binding protein 2; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}	Back alignment and structure

>2rqv_A BUD emergence protein 1; BEM1P, SH3, CDC42P, cytoplasm, cytoskeleton, SH3 domain, SIG protein; NMR {Saccharomyces cerevisiae} PDB: 2rqw_A	Back alignment and structure

>1udl_A Intersectin 2, KIAA1256; beta barrel, SH3 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.34.2.1	Back alignment and structure

>1wxu_A Peroxisomal biogenesis factor 13; SH3 domain, PEX13, protein-protein interaction, structural genomics; NMR {Mus musculus}	Back alignment and structure

>2kbt_A Chimera of proto-oncogene VAV, linker, immunoglobulin G-binding protein G; sortase, protein ligation, intein, inset, solubility enhancement; NMR {Mus musculus}	Back alignment and structure

>4d8k_A Tyrosine-protein kinase LCK; protein kinases, SH2 domain, SH3 domain, structural genomics center for structural genomics, JCSG; 2.36A {Homo sapiens} PDB: 1lck_A* 1x27_A*	Back alignment and structure

>3qwx_X Cell death abnormality protein 2; cell engulfment, signaling protein; 2.01A {Caenorhabditis elegans}	Back alignment and structure

>1gri_A Growth factor bound protein 2; SH2, SH3, signal transduction adaptor; 3.10A {Homo sapiens} SCOP: b.34.2.1 b.34.2.1 d.93.1.1 PDB: 1aze_A 2a37_A 2azv_A 2a36_A 2azs_A	Back alignment and structure

>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase, phosphorylation, SH2, SH3, phosphotyrosine, proto-oncogene, phosphotransferase; HET: PTR; 1.50A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B* 3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A* 3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ...	Back alignment and structure

>3a98_A DOCK2, dedicator of cytokinesis protein 2; protein-protein complex, DOCK2, ELMO1, SH3 domain, PH domain bundle, proline-rich sequence, cytoskeleton; 2.10A {Homo sapiens}	Back alignment and structure

>2dvj_A V-CRK sarcoma virus CT10 oncogene homolog, isoform A; SH3, SH2, signal transduction, adapter molecule, signaling protein; HET: PTR; NMR {Homo sapiens} PDB: 2eyy_A 2eyv_A 2eyw_A	Back alignment and structure

>1ng2_A Neutrophil cytosolic factor 1; P47PHOX, autoinhibited, SH3 domain, NADPH oxidase, oxidoredu activator; 1.70A {Homo sapiens} SCOP: b.34.2.1 b.34.2.1 PDB: 1uec_A 1ov3_A 1wlp_B	Back alignment and structure

>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex, DOWN-regulated kinase, ordered activation loop; HET: PTR PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A* 3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B	Back alignment and structure

>3jv3_A Intersectin-1; SH3 domain, DH domain, guanine nucleotide exchange factor, autoinhibition, domain-swapped, cell junction, cell project endocytosis; 2.40A {Mus musculus} PDB: 3gf9_A	Back alignment and structure

>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7	Back alignment and structure

>1tuc_A Alpha-spectrin; capping protein, calcium-binding, duplication, repeat, SH3 domain, cytoskeleton; 2.02A {Gallus gallus} SCOP: b.34.2.1	Back alignment and structure

>3pvl_A Myosin VIIA isoform 1; protein complex, novel folding, protein cargo binding, cargo proteins, motor protein-protein transport complex; 2.80A {Mus musculus}	Back alignment and structure

>1ng2_A Neutrophil cytosolic factor 1; P47PHOX, autoinhibited, SH3 domain, NADPH oxidase, oxidoredu activator; 1.70A {Homo sapiens} SCOP: b.34.2.1 b.34.2.1 PDB: 1uec_A 1ov3_A 1wlp_B	Back alignment and structure

>2jmc_A Spectrin alpha chain, brain and P41 peptide chimera; SPC-SH3, signaling protein; NMR {Gallus gallus}	Back alignment and structure

>2eyz_A V-CRK sarcoma virus CT10 oncogene homolog isoform A; SH2, SH3, signaling protein; NMR {Homo sapiens} PDB: 2l3s_A 2l3p_A 2l3q_A 2ggr_A	Back alignment and structure

>2dyb_A Neutrophil cytosol factor 4; P40(PHOX), NADPH oxidase, oxidoreductase; HET: CAF; 3.15A {Homo sapiens}	Back alignment and structure

>2eyz_A V-CRK sarcoma virus CT10 oncogene homolog isoform A; SH2, SH3, signaling protein; NMR {Homo sapiens} PDB: 2l3s_A 2l3p_A 2l3q_A 2ggr_A	Back alignment and structure

>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK, signal transduction, SH2, SH3, SRC homology, tyrosine kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1jeg_A	Back alignment and structure

>1gri_A Growth factor bound protein 2; SH2, SH3, signal transduction adaptor; 3.10A {Homo sapiens} SCOP: b.34.2.1 b.34.2.1 d.93.1.1 PDB: 1aze_A 2a37_A 2azv_A 2a36_A 2azs_A	Back alignment and structure

>2lqn_A CRK-like protein; SH2, SH3, V-CRK sarcoma virus CT10 oncogene homolog (avian)- signaling protein; NMR {Homo sapiens} PDB: 2lqw_A*	Back alignment and structure

>3qwy_A Cell death abnormality protein 2; cell engulfment, signaling protein; 2.52A {Caenorhabditis elegans}	Back alignment and structure

>2pz1_A RHO guanine nucleotide exchange factor 4; helical bundle, beta barrel, beta sandwich, signaling protei; 2.25A {Homo sapiens} PDB: 2dx1_A 3nmz_D 3nmx_D	Back alignment and structure

>2lqn_A CRK-like protein; SH2, SH3, V-CRK sarcoma virus CT10 oncogene homolog (avian)- signaling protein; NMR {Homo sapiens} PDB: 2lqw_A*	Back alignment and structure

>3qwy_A Cell death abnormality protein 2; cell engulfment, signaling protein; 2.52A {Caenorhabditis elegans}	Back alignment and structure

>1u3o_A Huntingtin-associated protein-interacting protein; SH3, CIS-proline,, signaling protein; NMR {Rattus norvegicus}	Back alignment and structure

>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1; transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A	Back alignment and structure

>3haj_A Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR, alternative splicing, coiled coil, cytoplasmic vesicle, endocytosis, phosphoprotein, polymorphism; 2.78A {Homo sapiens}	Back alignment and structure

>1kjw_A Postsynaptic density protein 95; protein-protein interaction, scaffold, neuropeptide; 1.80A {Rattus norvegicus} SCOP: b.34.2.1 c.37.1.1 PDB: 1jxm_A* 1jxo_A	Back alignment and structure

>1g2b_A Spectrin alpha chain; capping protein, calcium-binding, duplication, repeat, SH3 domain, cytoskeleton, metal binding protein; 1.12A {Gallus gallus} SCOP: b.34.2.1 PDB: 1tud_A	Back alignment and structure

>2dyb_A Neutrophil cytosol factor 4; P40(PHOX), NADPH oxidase, oxidoreductase; HET: CAF; 3.15A {Homo sapiens}	Back alignment and structure

>4dey_A Voltage-dependent L-type calcium channel subunit; maguk, voltage dependent calcium channel, transport protein; 1.95A {Oryctolagus cuniculus} PDB: 4dex_A 1t3l_A 1t3s_A 1vyv_A 1vyu_A 1vyt_A 1t0h_B 1t0j_B 1t0h_A 1t0j_A	Back alignment and structure

>1ri9_A FYN-binding protein; SH3-like, helically extended, signaling protein; NMR {Homo sapiens} SCOP: b.34.2.1	Back alignment and structure

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B	Back alignment and structure

>2xkx_A Disks large homolog 4; structural protein, scaffold protein, membrane associated GU kinase; 22.9A {Rattus norvegicus}	Back alignment and structure

>3kfv_A Tight junction protein ZO-3; structural genomics consortium, SGC, cell junction, cell membrane, membrane, SH3 domain; 2.80A {Homo sapiens}	Back alignment and structure

>2gtj_A FYN-binding protein; SH3, redox, signaling protein; NMR {Homo sapiens} PDB: 2gto_A	Back alignment and structure

>3tsz_A Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffolding, JAM, tight junction, cell adhesio; 2.50A {Homo sapiens} PDB: 3tsw_A 3lh5_A	Back alignment and structure

>1ug1_A KIAA1010 protein; structural genomics, SH3 domain, hypothetical protein BAA76854.1, riken structural genomics/proteomics initiative RSGI; NMR {Homo sapiens} SCOP: b.34.2.1	Back alignment and structure

>3shw_A Tight junction protein ZO-1; PDZ-SH3-GUK supramodule, cell adhesion; 2.90A {Homo sapiens}	Back alignment and structure

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A	Back alignment and structure

>3tvt_A Disks large 1 tumor suppressor protein; DLG, SRC-homology-3, guanylate kinase, phosphorylation-depen cell membrane; 1.60A {Drosophila melanogaster} PDB: 3uat_A*	Back alignment and structure

>3pe0_A Plectin; cytoskeleton, plakin, spectrin repeat, SH3, structural prote intermediate filament, crosslinking; 2.95A {Homo sapiens}	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		473
d1arka_		60	b.34.2.1 (A:) SH3 domain from nebulin {Human (Homo	3e-04
d1jo8a_		58	b.34.2.1 (A:) Actin binding protein ABP1 {Baker's	3e-04
d1fmka1		64	b.34.2.1 (A:82-145) c-src protein tyrosine kinase	4e-04
d1efna_		57	b.34.2.1 (A:) Fyn proto-oncogene tyrosine kinase,	6e-04
d1phta_		83	b.34.2.1 (A:) Phosphatidylinositol 3-kinase (p85-a	0.003
d1k9aa1		71	b.34.2.1 (A:6-76) Carboxyl-terminal src kinase (cs	0.003
d1gcqc_		69	b.34.2.1 (C:) Vav N-terminal SH3 domain {Mouse (Mu	0.004

>d1arka_ b.34.2.1 (A:) SH3 domain from nebulin {Human (Homo sapiens) [TaxId: 9606]} Length = 60	Back information, alignment and structure


class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: SH3 domain from nebulin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.7 bits (85), Expect = 3e-04
 Identities = 14/47 (29%), Positives = 24/47 (51%)

Query: 404 AVLDHTPQTADQIELRVGDEVKPAGNHWDGFSRGTNLRTNRHGLYPS 450
           A+ D+    AD++  + GD +       +G+  GT  RT R G+ P+
Sbjct: 8   AMYDYMAADADEVSFKDGDAIINVQAIDEGWMYGTVQRTGRTGMLPA 54

PyMOL of d1arka_

>d1jo8a_ b.34.2.1 (A:) Actin binding protein ABP1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 58	Back information, alignment and structure

>d1fmka1 b.34.2.1 (A:82-145) c-src protein tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 64	Back information, alignment and structure

>d1efna_ b.34.2.1 (A:) Fyn proto-oncogene tyrosine kinase, SH3 domain {Human (Homo sapiens) [TaxId: 9606]} Length = 57	Back information, alignment and structure

>d1phta_ b.34.2.1 (A:) Phosphatidylinositol 3-kinase (p85-alpha subunit, pi3k), SH3 domain {Human (Homo sapiens) [TaxId: 9606]} Length = 83	Back information, alignment and structure

>d1k9aa1 b.34.2.1 (A:6-76) Carboxyl-terminal src kinase (csk) {Human (Homo sapiens) [TaxId: 9606]} Length = 71	Back information, alignment and structure

>d1gcqc_ b.34.2.1 (C:) Vav N-terminal SH3 domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 69	Back information, alignment and structure

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		473
d1phta_		83	Phosphatidylinositol 3-kinase (p85-alpha subunit,	99.32
d1arka_		60	SH3 domain from nebulin {Human (Homo sapiens) [Tax	99.31
d1jo8a_		58	Actin binding protein ABP1 {Baker's yeast (Sacchar	99.28
d1spka_		72	BAI1-associated protein 2-like 1 (RIKEN cDNA 13000	99.25
d1efna_		57	Fyn proto-oncogene tyrosine kinase, SH3 domain {Hu	99.25
d1fmka1		64	c-src protein tyrosine kinase {Human (Homo sapiens	99.24
d1gcqc_		69	Vav N-terminal SH3 domain {Mouse (Mus musculus) [T	99.21
d1wlpb1		53	p47pox (neutrophil cytosolic factor 1) {Human (Hom	99.19
d1ue9a_		80	Intersectin 2 (KIAA1256) {Human (Homo sapiens) [Ta	99.18
d1utia_		57	Grb2-related adaptor protein 2 (Mona/Gads) {Mouse	99.16
d1u06a1		55	alpha-Spectrin, SH3 domain {Chicken (Gallus gallus	99.14
d1gcqa_		56	Growth factor receptor-bound protein 2 (GRB2), N-	99.13
d2rn8a1		53	Bruton's tyrosine kinase {Mus musculus [TaxId: 100	99.12
d1zuua1		56	BZZ1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	99.11
d1uj0a_		58	Signal transducing adaptor molecule Stam2 {Mouse (	99.11
d1awwa_		67	Bruton's tyrosine kinase {Human (Homo sapiens) [Ta	99.1
d1qcfa1		65	Hemapoetic cell kinase Hck {Human (Homo sapiens) [	99.09
d1ng2a1		58	p47pox (neutrophil cytosolic factor 1) {Human (Hom	99.09
d2iima1		62	p56-lck tyrosine kinase, SH3 domain {Human (Homo s	99.08
d1k4us_		62	p67phox {Human (Homo sapiens) [TaxId: 9606]}	99.07
d1ckaa_		57	C-Crk, N-terminal SH3 domain {Mouse (Mus musculus)	99.06
d1sema_		58	Growth factor receptor-bound protein 2 (GRB2), N-	99.06
d1gl5a_		67	tyrosine kinase tec {Mouse (Mus musculus) [TaxId:	99.05
d1j3ta_		74	Intersectin 2 (KIAA1256) {Human (Homo sapiens) [Ta	99.04
d1k9aa1		71	Carboxyl-terminal src kinase (csk) {Human (Homo sa	99.03
d1ycsb2		63	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.01
d1opka1		57	Abl tyrosine kinase, SH3 domain {Mouse (Mus muscul	99.0
d1wfwa_		74	Kalirin-9a {Mouse (Mus musculus) [TaxId: 10090]}	99.0
d1ujya_		76	Rac/CDC42 GEF 6 {Human (Homo sapiens) [TaxId: 9606	98.99
d1u5sa1		71	Nck-2 {Human (Homo sapiens) [TaxId: 9606]}	98.99
d1bb9a_		83	Amphiphysin 2 {Rat (Rattus norvegicus) [TaxId: 101	98.99
d2v1ra1		67	Peroxisomal membrane protein Pex13p {Baker's yeast	98.98
d1uffa_		93	Intersectin 2 (KIAA1256) {Human (Homo sapiens) [Ta	98.98
d1oota_		58	Hypothetical protein YFR024c {Baker's yeast (Sacch	98.98
d1udla_		98	Intersectin 2 (KIAA1256) {Human (Homo sapiens) [Ta	98.97
d2hspa_		71	Phospholipase C, SH3 domain {Human (Homo sapiens)	98.96
d1ng2a2		118	p47pox (neutrophil cytosolic factor 1) {Human (Hom	98.94
d1uhfa_		69	Intersectin 2 (KIAA1256) {Human (Homo sapiens) [Ta	98.93
d1i07a_		59	EPS8 SH3 domain {Mouse (Mus musculus) [TaxId: 1009	98.9
d1uhca_		79	Hypothetical protein Baa76854.1 (KIAA1010) {Human	98.9
d1gria1		56	Growth factor receptor-bound protein 2 (GRB2), N-	98.89
d1ugva_		72	Olygophrenin-1 like protein (KIAA0621) {Human (Hom	98.88
d1ug1a_		92	Hypothetical protein Baa76854.1 (KIAA1010) {Human	98.77
d1i1ja_		106	Melanoma inhibitory activity protein {Human (Homo	98.71
d1t0ha_		96	SH3-like domain of the L-type calcium channel {Rab	98.62
d1kjwa1		96	Psd-95 {Rat (Rattus norvegicus) [TaxId: 10116]}	98.59
d1wiea_		96	RIM binding protein 2, RIMBP2 {Human (Homo sapiens	98.59
d1vyva1		145	SH3-like domain of the L-type calcium channel {Rat	98.29
d1vyua1		136	SH3-like domain of the L-type calcium channel {Rat	97.71
d1ri9a_		77	Fyn-binding protein (T-cell adapter protein adap)	82.06

>d1phta_ b.34.2.1 (A:) Phosphatidylinositol 3-kinase (p85-alpha subunit, pi3k), SH3 domain {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Phosphatidylinositol 3-kinase (p85-alpha subunit, pi3k), SH3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.32  E-value=3.1e-13  Score=107.53  Aligned_cols=60  Identities=22%  Similarity=0.221  Sum_probs=54.0

Q ss_pred             ccchhhhccCCCCCCCccccCCCCeEeecccc---------------ccceeeeEecCCCeeeeeeCcceeeccc
Q psy1897         399 DNIQLAVLDHTPQTADQIELRVGDEVKPAGNH---------------WDGFSRGTNLRTNRHGLYPSFKVISRVE  458 (473)
Q Consensus       399 ~~~~~a~~~~~~~~~~el~l~~GD~i~~~~~~---------------~~G~~~g~n~rt~~~Gl~P~~~v~~~~~  458 (473)
                      ...++|+|+|.|..++||+|++||+|.|....               .+||+.|+|.|||+.|+||++||+.+-.
T Consensus         3 G~~~raly~y~~~~~~eLs~~~Gd~i~V~~~~~~~~~~~~~~~~~~~~~GW~~G~~~~~g~~G~FP~nYVe~i~~   77 (83)
T d1phta_           3 GYQYRALYDYKKEREEDIDLHLGDILTVNKGSLVALGFSDGQEARPEEIGWLNGYNETTGERGDFPGTYVEYIGR   77 (83)
T ss_dssp             EEEEEECSCBCCSSTTBCCBCTTCEEEEEHHHHHTTTCCTTGGGCHHHHCEEEEEETTTTEEEEEEGGGEEEEEE
T ss_pred             CCEEEEcCccCCCCCCcccccCCCEEEEEeccccccccccccccccCCCCeEEEEECCCCcEeeEehhhEEEcCC
Confidence            35788999999999999999999999999654               4799999999999999999999988754

PyMOL of d1phta_

>d1arka_ b.34.2.1 (A:) SH3 domain from nebulin {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1jo8a_ b.34.2.1 (A:) Actin binding protein ABP1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1spka_ b.34.2.1 (A:) BAI1-associated protein 2-like 1 (RIKEN cDNA 1300006m19) {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d1efna_ b.34.2.1 (A:) Fyn proto-oncogene tyrosine kinase, SH3 domain {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1fmka1 b.34.2.1 (A:82-145) c-src protein tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1gcqc_ b.34.2.1 (C:) Vav N-terminal SH3 domain {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d1wlpb1 b.34.2.1 (B:229-281) p47pox (neutrophil cytosolic factor 1) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1ue9a_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1utia_ b.34.2.1 (A:) Grb2-related adaptor protein 2 (Mona/Gads) {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d1u06a1 b.34.2.1 (A:7-61) alpha-Spectrin, SH3 domain {Chicken (Gallus gallus) [TaxId: 9031]}	Back information, alignment and structure

>d1gcqa_ b.34.2.1 (A:) Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2rn8a1 b.34.2.1 (A:176-228) Bruton's tyrosine kinase {Mus musculus [TaxId: 10090]}	Back information, alignment and structure

>d1zuua1 b.34.2.1 (A:2-57) BZZ1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1uj0a_ b.34.2.1 (A:) Signal transducing adaptor molecule Stam2 {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d1awwa_ b.34.2.1 (A:) Bruton's tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1qcfa1 b.34.2.1 (A:80-145) Hemapoetic cell kinase Hck {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1ng2a1 b.34.2.1 (A:157-214) p47pox (neutrophil cytosolic factor 1) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2iima1 b.34.2.1 (A:58-119) p56-lck tyrosine kinase, SH3 domain {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1k4us_ b.34.2.1 (S:) p67phox {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1ckaa_ b.34.2.1 (A:) C-Crk, N-terminal SH3 domain {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d1sema_ b.34.2.1 (A:) Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains {Caenorhabditis elegans, SEM-5 [TaxId: 6239]}	Back information, alignment and structure

>d1gl5a_ b.34.2.1 (A:) tyrosine kinase tec {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d1j3ta_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1k9aa1 b.34.2.1 (A:6-76) Carboxyl-terminal src kinase (csk) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1ycsb2 b.34.2.1 (B:457-519) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1opka1 b.34.2.1 (A:83-139) Abl tyrosine kinase, SH3 domain {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d1wfwa_ b.34.2.1 (A:) Kalirin-9a {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d1ujya_ b.34.2.1 (A:) Rac/CDC42 GEF 6 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1u5sa1 b.34.2.1 (A:1-71) Nck-2 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1bb9a_ b.34.2.1 (A:) Amphiphysin 2 {Rat (Rattus norvegicus) [TaxId: 10116]}	Back information, alignment and structure

>d2v1ra1 b.34.2.1 (A:10-76) Peroxisomal membrane protein Pex13p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1uffa_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1oota_ b.34.2.1 (A:) Hypothetical protein YFR024c {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1udla_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2hspa_ b.34.2.1 (A:) Phospholipase C, SH3 domain {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1ng2a2 b.34.2.1 (A:215-332) p47pox (neutrophil cytosolic factor 1) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1uhfa_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1i07a_ b.34.2.1 (A:) EPS8 SH3 domain {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d1uhca_ b.34.2.1 (A:) Hypothetical protein Baa76854.1 (KIAA1010) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1gria1 b.34.2.1 (A:1-56) Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1ugva_ b.34.2.1 (A:) Olygophrenin-1 like protein (KIAA0621) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1ug1a_ b.34.2.1 (A:) Hypothetical protein Baa76854.1 (KIAA1010) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1i1ja_ b.34.2.1 (A:) Melanoma inhibitory activity protein {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1t0ha_ b.34.2.1 (A:) SH3-like domain of the L-type calcium channel {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}	Back information, alignment and structure

>d1kjwa1 b.34.2.1 (A:430-525) Psd-95 {Rat (Rattus norvegicus) [TaxId: 10116]}	Back information, alignment and structure

>d1wiea_ b.34.2.1 (A:) RIM binding protein 2, RIMBP2 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1vyva1 b.34.2.1 (A:71-215) SH3-like domain of the L-type calcium channel {Rat (Rattus norvegicus) [TaxId: 10116]}	Back information, alignment and structure

>d1vyua1 b.34.2.1 (A:39-174) SH3-like domain of the L-type calcium channel {Rat (Rattus norvegicus) [TaxId: 10116]}	Back information, alignment and structure

>d1ri9a_ b.34.2.1 (A:) Fyn-binding protein (T-cell adapter protein adap) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure