Psyllid ID: psy1958

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200--
Protein Sequence
MDQPPVNVHPTKHEVHFLHEDTIIERVQSMLEKTLLGSNTSRVFYTQTKLPSFSTEPPTTKAKPSSTSSNTNNTTTTTTPAYKLVRTDASEQKLDRFLSKYIADQRATSKQTSNKKYKRREIKLSSVRDLRGEIEKQKSSQLCEVFRKLSFVGCATPCMCLIQHETKLYIVNVTYVLEELFYQLMLHDFGNFGVFRFEGSFY
Secondary Structure (PSIPRED)
ccccccccccccccEEcccHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHccHHHccccccccccccccccccEEcccHHHHHHHHHHHHcHHHHHHHHccEEEEEEcccEEEEEEccEEEEEEHHHHHHHHHHHHHHHHHcccccEEcccccc
Secondary Structure Prediction (SSPRO)
ccHEEccccccccccEEccHHHHHHHHHHHHHHHHHcccccccEEEEcccccccccccccccccccccccccccccccccccccccccccHccHHHHccccccccccccccccccccccEEEEcHHHHHHHHHHHHHHcHHHHHHHHccEEEEEEcccEEEEEcccEEEEEEHHHHHHHHHHHHHHHHHccccEEEEccccc
Coil and Loop (DISEMBL)
mdqppvnvhptkhevhflHEDTIIERVQSMLEKTllgsntsrvfytqtklpsfsteppttkakpsstssntnnttttttpayklvrtdaSEQKLDRFLSKYIADqratskqtsnkkykrreikLSSVRDLRGEIEKQKSSQLCEVFRklsfvgcatpcmcliqHETKLYIVNVTYVLEELFYQLMLhdfgnfgvfrfegsfy
Flexible Loop (DISEMBL)
mdqppvnvhptkhevhflheDTIIERVQSMLEKTLLGSNTSRVFYTQtklpsfsteppttkakpsstssntnnttttttpayklvrtdaseqKLDRFLSkyiadqratskqtsnkkykrreiklssvrdlrgeiekqkssqlcEVFRKLSFVGCATPCMCLIQHETKLYIVNVTYVLEELFYQLMLHDFGNFGVFRFEGSFY
Low Complexity Region (SEG)
MDQPPVNVHPTKHEVHFLHEDTIIERVQSMLEKTLLGSNTSRVFYTQTKLPSFSTEppttkakpsstssntnnttttttpaYKLVRTDASEQKLDRFLSKYIADQRATSKQTSNKKYKRREIKLSSVRDLRGEIEKQKSSQLCEVFRKLSFVGCATPCMCLIQHETKLYIVNVTYVLEELFYQLMLHDFGNFGVFRFEGSFY
Disordered region (IsUnstruct)
*************EVHFLHEDTIIERVQSMLEKTLLGSNTSRVFYT**********************************************************************************************QLCEVFRKLSFVGCATPCMCLIQHETKLYIVNVTYVLEELFYQLMLHDFGNFGVFRFE****
Disordered Region (DISOPRED)
MDQPPVNVHPTKHEVHFLHEDTIIERVQSMLEKTLLGSNTSRV*********************************************************************SNKKYKRREIK*******************CEVFRKLSFVGCATPCMCLIQHETKLYIVNVTYVLEELFYQLMLHDFGNFGVFRFEGSF*
Disordered Region (DISEMBL)
********HPTKHEVHFLHEDTIIERVQSMLEKTLLGSNTSRVFYTQTKLP************************TTTTPAYKLVRTDASEQKLDRFLSKYIADQ**************REIKLSSVRDLRGEIEKQKSSQLCEVFRKLSFVGCATPCMCLIQHETKLYIVNVTYVLEELFYQLMLHDFGNFGVFRFEGSFY
Disordered Region (DISPRO)
*DQPPVNVHPTKHEVHFLHEDTIIERVQSMLEKTLLGSNTSRVFYT*TKL******************************************************************YKRREIKLSSVRDLRGEIEKQKSSQLCEVFRKLSFVGCATPCMCLIQHETKLYIVNVTYVLEELFYQLMLHDFGNFGVFRFE****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MDQPPVNVHPTKHEVHFLHEDTIIERVQSMLEKTLLGSNTSRVFYTQTKLPSFSTEPPTTKAKPSSTSSNTNNTTTTTTPAYKLVRTDASEQKLDRFLSKYIADQRATSKQTSNKKYKRREIKLSSVRDLRGEIEKQKSSQLCEVFRKLSFVGCATPCMCLIQHETKLYIVNVTYVLEELFYQLMLHDFGNFGVFRFEGSFY
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	202	2.2.26 [Sep-21-2011]
Q9JK91	760	DNA mismatch repair prote	yes	N/A	0.455	0.121	0.521	2e-21
P97679	757	DNA mismatch repair prote	yes	N/A	0.450	0.120	0.515	7e-21
P40692	756	DNA mismatch repair prote	yes	N/A	0.460	0.123	0.505	1e-18
Q9P7W6	684	Putative MutL protein hom	yes	N/A	0.900	0.266	0.267	4e-12
P38920	769	DNA mismatch repair prote	yes	N/A	0.509	0.133	0.318	3e-09
Q54KD8	884	DNA mismatch repair prote	yes	N/A	0.361	0.082	0.344	2e-08

>sp|Q9JK91|MLH1_MOUSE DNA mismatch repair protein Mlh1 OS=Mus musculus GN=Mlh1 PE=2 SV=2

 Score =  102 bits (253), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 49/94 (52%), Positives = 70/94 (74%), Gaps = 2/94 (2%)

Query: 6   VNVHPTKHEVHFLHEDTIIERVQSMLEKTLLGSNTSRVFYTQTKLPSFSTEPPTTKAKPS 65
           VNVHPTKHEVHFLHE++I++RVQ  +E  LLGSN+SR+++TQT LP  +  P    A+P+
Sbjct: 305 VNVHPTKHEVHFLHEESILQRVQQHIESKLLGSNSSRMYFTQTLLPGLAG-PSGEAARPT 363

Query: 66  S-TSSNTNNTTTTTTPAYKLVRTDASEQKLDRFL 98
           +  +S++ + +     AY++VRTD+ EQKLD FL
Sbjct: 364 TGVASSSTSGSGDKVYAYQMVRTDSREQKLDAFL 397

Heterodimerizes with Pms2 to form MutL alpha, a component of the post-replicative DNA mismatch repair system (MMR). DNA repair is initiated by MutS alpha (Msh2-Msh6) or MutS beta (Msh2-Msh6) binding to a dsDNA mismatch, then MutL alpha is recruited to the heteroduplex. Assembly of the MutL-MutS-heteroduplex ternary complex in presence of RFC and PCNA is sufficient to activate endonuclease activity of Pms2. It introduces single-strand breaks near the mismatch and thus generates new entry points for the exonuclease EXO1 to degrade the strand containing the mismatch. DNA methylation would prevent cleavage and therefore assure that only the newly mutated DNA strand is going to be corrected. MutL alpha (Mlh1-Pms2) interacts physically with the clamp loader subunits of DNA polymerase III, suggesting that it may play a role to recruit the DNA polymerase III to the site of the MMR. Also implicated in DNA damage signaling, a process which induces cell cycle arrest and can lead to apoptosis in case of major DNA damages. Heterodimerizes with Mlh3 to form MutL gamma which plays a role in meiosis.
Mus musculus (taxid: 10090)

>sp|P97679|MLH1_RAT DNA mismatch repair protein Mlh1 OS=Rattus norvegicus GN=Mlh1 PE=2 SV=1

 Score =  100 bits (249), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 49/95 (51%), Positives = 71/95 (74%), Gaps = 4/95 (4%)

Query: 6   VNVHPTKHEVHFLHEDTIIERVQSMLEKTLLGSNTSRVFYTQTKLPSFSTEPPTTKAKPS 65
           VNVHPTKHEVHFLHE++I+ERVQ  +E  LLGSN+SR+++TQT LP  +   P+ +A  S
Sbjct: 305 VNVHPTKHEVHFLHEESILERVQQHIESKLLGSNSSRMYFTQTLLPGLAG--PSGEAVKS 362

Query: 66  ST--SSNTNNTTTTTTPAYKLVRTDASEQKLDRFL 98
           +T  +S++ + +     AY++VRTD+ +QKLD F+
Sbjct: 363 TTGIASSSTSGSGDKVHAYQMVRTDSRDQKLDAFM 397

Heterodimerizes with Pms2 to form MutL alpha, a component of the post-replicative DNA mismatch repair system (MMR). DNA repair is initiated by MutS alpha (Msh2-Msh6) or MutS beta (Msh2-Msh6) binding to a dsDNA mismatch, then MutL alpha is recruited to the heteroduplex. Assembly of the MutL-MutS-heteroduplex ternary complex in presence of RFC and PCNA is sufficient to activate endonuclease activity of Pms2. It introduces single-strand breaks near the mismatch and thus generates new entry points for the exonuclease EXO1 to degrade the strand containing the mismatch. DNA methylation would prevent cleavage and therefore assure that only the newly mutated DNA strand is going to be corrected. MutL alpha (Mlh1-Pms2) interacts physically with the clamp loader subunits of DNA polymerase III, suggesting that it may play a role to recruit the DNA polymerase III to the site of the MMR. Also implicated in DNA damage signaling, a process which induces cell cycle arrest and can lead to apoptosis in case of major DNA damages. Heterodimerizes with Mlh3 to form MutL gamma which plays a role in meiosis.

Rattus norvegicus (taxid: 10116)

>sp|P40692|MLH1_HUMAN DNA mismatch repair protein Mlh1 OS=Homo sapiens GN=MLH1 PE=1 SV=1

 Score = 93.2 bits (230), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 47/93 (50%), Positives = 67/93 (72%)

Query: 6   VNVHPTKHEVHFLHEDTIIERVQSMLEKTLLGSNTSRVFYTQTKLPSFSTEPPTTKAKPS 65
           VNVHPTKHEVHFLHE++I+ERVQ  +E  LLGSN+SR+++TQT LP  +          +
Sbjct: 305 VNVHPTKHEVHFLHEESILERVQQHIESKLLGSNSSRMYFTQTLLPGLAGPSGEMVKSTT 364

Query: 66  STSSNTNNTTTTTTPAYKLVRTDASEQKLDRFL 98
           S +S++ + ++    A+++VRTD+ EQKLD FL
Sbjct: 365 SLTSSSTSGSSDKVYAHQMVRTDSREQKLDAFL 397

Heterodimerizes with PMS2 to form MutL alpha, a component of the post-replicative DNA mismatch repair system (MMR). DNA repair is initiated by MutS alpha (MSH2-MSH6) or MutS beta (MSH2-MSH6) binding to a dsDNA mismatch, then MutL alpha is recruited to the heteroduplex. Assembly of the MutL-MutS-heteroduplex ternary complex in presence of RFC and PCNA is sufficient to activate endonuclease activity of PMS2. It introduces single-strand breaks near the mismatch and thus generates new entry points for the exonuclease EXO1 to degrade the strand containing the mismatch. DNA methylation would prevent cleavage and therefore assure that only the newly mutated DNA strand is going to be corrected. MutL alpha (MLH1-PMS2) interacts physically with the clamp loader subunits of DNA polymerase III, suggesting that it may play a role to recruit the DNA polymerase III to the site of the MMR. Also implicated in DNA damage signaling, a process which induces cell cycle arrest and can lead to apoptosis in case of major DNA damages. Heterodimerizes with MLH3 to form MutL gamma which plays a role in meiosis.

Homo sapiens (taxid: 9606)

>sp|Q9P7W6|MLH1_SCHPO Putative MutL protein homolog 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=mlh1 PE=2 SV=1

 Score = 71.2 bits (173), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 61/228 (26%), Positives = 97/228 (42%), Gaps = 46/228 (20%)

Query: 2   DQPPVNVHPTKHEVHFLHEDTIIERVQSMLEKTLLGSNTSRVFYTQTKLPSFSTEPPTTK 61
           +Q  VNVHP+K  VHFL++  I   +   L + L  ++T R +  Q  +PS S       
Sbjct: 312 EQLDVNVHPSKRIVHFLYDQEIATSICDKLGEILERTDTERSYPLQAMIPSIS------- 364

Query: 62  AKPSSTSSNTNNTTTTTTPAYK-----LVRTDASEQKLDRFLSKYI-------------- 102
                   NT N  +++  A +     LVRTD  E+ +   LS                 
Sbjct: 365 --------NTKNAESSSQKAVRTYENYLVRTDPRERSIKSMLSDNFLQRSSNNYDNEIIE 416

Query: 103 -ADQRATSKQTSN--KKYKRREI-------KLSSVRDLRGEIEKQKSSQLCEVFRKLSFV 152
             D   ++K  +N  K  +  EI        L S++ L+ ++          +  +  +V
Sbjct: 417 KVDSANSNKNATNDIKDLQTEEIVEEGNSIDLESIKSLQKQVINSMHVLATNILTEHKYV 476

Query: 153 G--CATPCMCLIQHETKLYIVNVTYVLEELFYQLMLHDFGNFGVFRFE 198
           G  C T  +  +QH   LY+V+   +   LFYQ+ L +FGN+G F  E
Sbjct: 477 GLVCPTRRIAAVQHNIGLYVVDYGKLSYHLFYQICLTEFGNYGEFVLE 524

This protein is involved in the repair of mismatches in DNA.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|P38920|MLH1_YEAST DNA mismatch repair protein MLH1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=MLH1 PE=1 SV=2

 Score = 62.0 bits (149), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 35/110 (31%), Positives = 58/110 (52%), Gaps = 7/110 (6%)

Query: 91  EQKLDRFLSKYIADQRATSKQTSNKKY-----KRREIKLSSVRDLRGEIEKQKSSQLCEV 145
           +QKL  +    IAD    +   S   Y     +R  + L+S++ LR +++     +L ++
Sbjct: 473 KQKLGDYKVPSIADDEKNALPISKDGYIRVPKERVNVNLTSIKKLREKVDDSIHRELTDI 532

Query: 146 FRKLSFVGCATP--CMCLIQHETKLYIVNVTYVLEELFYQLMLHDFGNFG 193
           F  L++VG       +  IQH+ KL++++   V  ELFYQ+ L DF NFG
Sbjct: 533 FANLNYVGVVDEERRLAAIQHDLKLFLIDYGSVCYELFYQIGLTDFANFG 582

Required for DNA mismatch repair (MMR), correcting base-base mismatches and insertion-deletion loops (IDLs) resulting from DNA replication, DNA damage or from recombination events between non-identical sequences during meiosis. Component of different MutL heterodimers that form a ternary complex with the MutS heterodimers, which initially recognize the DNA mismatches. This complex is thought to be responsible for directing the downsteam MMR events, including strand discrimination, excision, and resynthesis. Plays a major role in maintaining the genetic stability of simple sequence repeats, the repair of heteroduplex sites present in meiotic recombination intermediates, and the promotion of meiotic crossing-over.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|Q54KD8|MLH1_DICDI DNA mismatch repair protein Mlh1 OS=Dictyostelium discoideum GN=mlh1 PE=3 SV=1

 Score = 58.9 bits (141), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 31/90 (34%), Positives = 47/90 (52%)

Query: 112 TSNKKYKRREIKLSSVRDLRGEIEKQKSSQLCEVFRKLSFVGCATPCMCLIQHETKLYIV 171
           T  K  K ++++L+S++ L  E +      L E F    FVGC      L+Q   KLY++
Sbjct: 611 TPRKTRKYKQVELTSIKTLISEFQSNVHDGLKEFFNDCVFVGCLDHSYALVQFGKKLYLI 670

Query: 172 NVTYVLEELFYQLMLHDFGNFGVFRFEGSF 201
           N+  + +ELFYQL L  F +F   +F  S 
Sbjct: 671 NLENITKELFYQLSLLRFSDFDSIKFSQSL 700

Heterodimerizes with pms1 to form MutL alpha, a component of the post-replicative DNA mismatch repair system (MMR). DNA repair is initiated by MutS alpha (msh2-msh6) or MutS beta (msh2-msh3) binding to a dsDNA mismatch, then MutL alpha is recruited to the heteroduplex. Assembly of the MutL-MutS-heteroduplex ternary complex in presence of rfc and pcna is sufficient to activate endonuclease activity of pms1. It introduces single-strand breaks near the mismatch and thus generates new entry points for the exonuclease exo1 to degrade the strand containing the mismatch.

Dictyostelium discoideum (taxid: 44689)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	202
328697305	677	PREDICTED: DNA mismatch repair protein M	0.965	0.288	0.447	3e-40
198427900	697	PREDICTED: similar to mutL homolog 1, co	0.950	0.275	0.427	1e-38
242008773	657	DNA mismatch repair protein MlH1, putati	0.910	0.280	0.425	2e-38
405966933	448	DNA mismatch repair protein Mlh1 [Crasso	0.930	0.419	0.423	6e-37
241558624	668	DNA mismatch repair protein mlh1, putati	0.915	0.276	0.427	3e-33
156380669	742	predicted protein [Nematostella vectensi	0.935	0.254	0.351	9e-33
195474635	664	GE19183 [Drosophila yakuba] gi|194175697	0.866	0.263	0.402	2e-31
194757576	663	GF13669 [Drosophila ananassae] gi|190622	0.856	0.260	0.402	7e-31
340375542	697	PREDICTED: DNA mismatch repair protein M	0.900	0.261	0.384	1e-30
195332392	664	GM21014 [Drosophila sechellia] gi|194124	0.866	0.263	0.400	3e-30

>gi|328697305|ref|XP_001945011.2| PREDICTED: DNA mismatch repair protein Mlh1-like [Acyrthosiphon pisum]

 Score =  170 bits (431), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 90/201 (44%), Positives = 125/201 (62%), Gaps = 6/201 (2%)

Query: 6   VNVHPTKHEVHFLHEDTIIERVQSMLEKTLLGSNTSRVFYTQTKLPSFSTEPPTTKAKPS 65
           VNVHPTKHEVHFLHED +I++V   ++  L G+NTSR FYTQT+LP  S++    K+  +
Sbjct: 305 VNVHPTKHEVHFLHEDKVIDKVVDAIQDKLSGTNTSRTFYTQTRLP-MSSDTLIDKSNEN 363

Query: 66  ---STSSNTNNTTTTTTPAYKLVRTDASEQKLDRFLSKYIADQRAT--SKQTSNKKYKRR 120
                S       +T     K+VRTD +EQK+D+FL+   ++       K  +N    RR
Sbjct: 364 IEIKESQKLKLANSTNVSQNKMVRTDCAEQKIDKFLNTSNSNNSTLMLPKSKTNDVITRR 423

Query: 121 EIKLSSVRDLRGEIEKQKSSQLCEVFRKLSFVGCATPCMCLIQHETKLYIVNVTYVLEEL 180
           EIKL+SV  LR EIE + S  L  +F+   +VG A+P   L QH+T LYI N   VL+E+
Sbjct: 424 EIKLTSVLSLRKEIENRCSDTLQTIFQNHKYVGAASPTWSLFQHDTNLYICNSNNVLQEM 483

Query: 181 FYQLMLHDFGNFGVFRFEGSF 201
           FYQ+M+++FGNFGV +F  + 
Sbjct: 484 FYQIMVYEFGNFGVIKFSNAL 504

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|198427900|ref|XP_002122535.1| PREDICTED: similar to mutL homolog 1, colon cancer, nonpolyposis type 2 [Ciona intestinalis]

 Score =  164 bits (416), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 89/208 (42%), Positives = 123/208 (59%), Gaps = 16/208 (7%)

Query: 6   VNVHPTKHEVHFLHEDTIIERVQSMLEKTLLGSNTSRVFYTQTKLPSFSTEPPTTKAKPS 65
           VNVHPTKHEVHFLHED ++  VQ  +E +LL  ++SR FY Q KL   +T  PT +    
Sbjct: 311 VNVHPTKHEVHFLHEDEVVTSVQKQVEASLLSCDSSRTFYMQVKLLPTNTSKPTGENTKE 370

Query: 66  STSSNTNNTTTTTTPA----YKLVRTDASEQKLDRFLSKY------------IADQRATS 109
           ST   T+ T     P     ++LVRTD+  QKLD FL K               D   + 
Sbjct: 371 STKDTTHPTKDKQLPTRVYDHQLVRTDSKLQKLDSFLLKSKNKVVEEPKIPSTPDDIESH 430

Query: 110 KQTSNKKYKRREIKLSSVRDLRGEIEKQKSSQLCEVFRKLSFVGCATPCMCLIQHETKLY 169
            +TS    ++REI+L+SV  L+ E++++ +  LC V    +FVGC  P + LIQH+TKL+
Sbjct: 431 DKTSAGLPRKREIRLTSVLQLQDEVKQKSNKDLCLVLHDHTFVGCVEPELALIQHQTKLH 490

Query: 170 IVNVTYVLEELFYQLMLHDFGNFGVFRF 197
           +VN   + E+LFYQ++L DFGNF +FR 
Sbjct: 491 LVNTGRLSEQLFYQILLQDFGNFAIFRL 518

Source: Ciona intestinalis

Species: Ciona intestinalis

Genus: Ciona

Family: Cionidae

Order: Enterogona

Class: Ascidiacea

Phylum: Chordata

Superkingdom: Eukaryota

>gi|242008773|ref|XP_002425174.1| DNA mismatch repair protein MlH1, putative [Pediculus humanus corporis] gi|212508876|gb|EEB12436.1| DNA mismatch repair protein MlH1, putative [Pediculus humanus corporis]

 Score =  164 bits (414), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 83/195 (42%), Positives = 121/195 (62%), Gaps = 11/195 (5%)

Query: 6   VNVHPTKHEVHFLHEDTIIERVQSMLEKTLLGSNTSRVFYTQTKLPSFSTEPPTTKAKPS 65
           VNVHPTKHEVHFLHE+ I+ +++++ EKTLLGSNTSR+FYTQ+KLP+             
Sbjct: 304 VNVHPTKHEVHFLHEENIVNKIKAIFEKTLLGSNTSRIFYTQSKLPA--------AIGGK 355

Query: 66  STSSNTNNTTTTTTPAYKLVRTDASEQKLDRFLSKYIADQRATSKQTSNKKYK---RREI 122
           S  +    + ++   A+K VRTD  +QKLD+F  +   D ++ S+  +N+  K   +REI
Sbjct: 356 SLDAKVEESDSSKIYAHKTVRTDCLDQKLDKFFHEKSNDTQSDSEVVNNQNSKPIEKREI 415

Query: 123 KLSSVRDLRGEIEKQKSSQLCEVFRKLSFVGCATPCMCLIQHETKLYIVNVTYVLEELFY 182
           KL S+  L+ ++E    S L  + +    VG      CL+Q++TKLY+ N   +++EL Y
Sbjct: 416 KLRSILQLKADVENASHSGLANIIKNFVVVGFINTKQCLLQYDTKLYLCNTENLVKELIY 475

Query: 183 QLMLHDFGNFGVFRF 197
           Q ML +F NFGV RF
Sbjct: 476 QTMLLNFANFGVLRF 490

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|405966933|gb|EKC32160.1| DNA mismatch repair protein Mlh1 [Crassostrea gigas]

 Score =  159 bits (402), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 91/215 (42%), Positives = 125/215 (58%), Gaps = 27/215 (12%)

Query: 6   VNVHPTKHEVHFLHEDTIIERVQSMLEKTLLGSNTSRVFYTQTKLPSFSTEPPTTKAKPS 65
           VNVHPTKHEVHFLHED II  +Q+ +E  LLG+N+SR +YTQ  LP       + +  PS
Sbjct: 53  VNVHPTKHEVHFLHEDAIISSIQAAIETKLLGANSSRTYYTQALLPGAPVSLDSKEEDPS 112

Query: 66  STSSNTNNTTTTTTPAYKLVRTDASEQKLDRFL----SKYIAD--------------QRA 107
           S+ S+    T     A+ +VRTD+ EQKLD F+    S   AD              + +
Sbjct: 113 SSKSSGAEKTY----AHHMVRTDSREQKLDAFVKPVQSSSSADRTTQPIRSDSAQPMETS 168

Query: 108 TSKQT-----SNKKYKRREIKLSSVRDLRGEIEKQKSSQLCEVFRKLSFVGCATPCMCLI 162
           TS QT        + K+R +KL+S+  L+ E+++     L E+F+   FVGC      L+
Sbjct: 169 TSDQTMQMPSCGVQQKKRPVKLTSILSLQEEVQESMHKNLREMFQFHKFVGCVNKEFSLM 228

Query: 163 QHETKLYIVNVTYVLEELFYQLMLHDFGNFGVFRF 197
           QH+TKLY+VN T +  ELFYQLM+ DFGN+G+ R 
Sbjct: 229 QHQTKLYLVNTTKLSHELFYQLMIFDFGNYGILRL 263

Source: Crassostrea gigas

Species: Crassostrea gigas

Genus: Crassostrea

Family: Ostreidae

Order: Ostreoida

Class: Bivalvia

Phylum: Mollusca

Superkingdom: Eukaryota

>gi|241558624|ref|XP_002400269.1| DNA mismatch repair protein mlh1, putative [Ixodes scapularis] gi|215499751|gb|EEC09245.1| DNA mismatch repair protein mlh1, putative [Ixodes scapularis]

 Score =  147 bits (370), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 85/199 (42%), Positives = 117/199 (58%), Gaps = 14/199 (7%)

Query: 6   VNVHPTKHEVHFLHEDTIIERVQSMLEKTLLGSNTSRVFYTQTKLPSFSTEPPTTKAKPS 65
           VNVHPTK EVHFLHED I+E VQ  ++  LL  N+SR + TQ++LP  +    T+KA   
Sbjct: 307 VNVHPTKKEVHFLHEDLILEAVQKAVDGALLACNSSRTYLTQSRLPQINV---TSKA--- 360

Query: 66  STSSNTNNTTTTTTPAYKLVRTDASEQKLDRFL-------SKYIADQRATSKQTSNKKYK 118
           S ++   + +        LVRTD+  QKLD FL       S     + ATS Q+   + +
Sbjct: 361 SVAAKKADGSAPVVDERHLVRTDSHLQKLDTFLTTARPSTSALGTPENATSSQSKVAEEQ 420

Query: 119 RREIKLSSVRDLRGEIEKQKSSQLCEVFRKLSFVGCATPCMCLIQHETKLYIVNVTYVLE 178
            R IKL SV+ L  ++  +    L ++FR  +FVGC      L+QH+T+LY+VN   V E
Sbjct: 421 PR-IKLQSVQALWNQVMAKSHQGLHDLFRNHTFVGCVNQRFSLVQHQTELYLVNTRKVTE 479

Query: 179 ELFYQLMLHDFGNFGVFRF 197
           ELFYQ+ML +FGNF VF+ 
Sbjct: 480 ELFYQIMLKNFGNFSVFKL 498

Source: Ixodes scapularis

Species: Ixodes scapularis

Genus: Ixodes

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|156380669|ref|XP_001631890.1| predicted protein [Nematostella vectensis] gi|156218938|gb|EDO39827.1| predicted protein [Nematostella vectensis]

 Score =  145 bits (366), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 90/256 (35%), Positives = 123/256 (48%), Gaps = 67/256 (26%)

Query: 6   VNVHPTKHEVHFLHEDTIIERVQSMLEKTLLGSNTSRVFYTQTKLPSFSTEPPTTKAKPS 65
           VNVHPTKHEVHFLHED I+E VQ  +E  LLG NTSR FYTQ  LP  +    +  A  +
Sbjct: 311 VNVHPTKHEVHFLHEDAIVEAVQKCVEMKLLGCNTSRTFYTQALLPGVAGTKSSESADVA 370

Query: 66  STSSNTNNTTTTTTPAYKLVRTDASEQKLDRFL---SKYIA------------------- 103
             SS+ N        A+++VRTD+ EQ L  F+    K +A                   
Sbjct: 371 GKSSSAN------VYAHQMVRTDSREQTLHAFIKPDGKSVANRNSSGDDAPSISPTNKRS 424

Query: 104 ------DQRATSKQTSNKKYK---------------------------------RREIKL 124
                 D +   K+T   +Y+                                 RRE++L
Sbjct: 425 NEGSGTDPKVIDKETFQAQYRKPNSVEPSISENKRAKLVEESNSFKRQKLNQFPRREVQL 484

Query: 125 SSVRDLRGEIEKQKSSQLCEVFRKLSFVGCATPCMCLIQHETKLYIVNVTYVLEELFYQL 184
            SV+ LR +I+K +   L ++F +  FVGC TP   L+QH TKLY+ N+  +  ELFYQ+
Sbjct: 485 ISVQKLREKIDKAEHRGLKDLFEEHKFVGCVTPSQALVQHNTKLYLANIHSLSRELFYQI 544

Query: 185 MLHDFGNFGVFRFEGS 200
           ++  FG+FG  R   S
Sbjct: 545 IMFQFGDFGFLRLSES 560

Source: Nematostella vectensis

Species: Nematostella vectensis

Genus: Nematostella

Family: Edwardsiidae

Order: Actiniaria

Class: Anthozoa

Phylum: Cnidaria

Superkingdom: Eukaryota

>gi|195474635|ref|XP_002089596.1| GE19183 [Drosophila yakuba] gi|194175697|gb|EDW89308.1| GE19183 [Drosophila yakuba]

 Score =  140 bits (354), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 80/199 (40%), Positives = 112/199 (56%), Gaps = 24/199 (12%)

Query: 6   VNVHPTKHEVHFLHEDTIIERVQSMLEKTLLGSNTSRVFYTQTKLPSFSTEPPTTKAKPS 65
           VNVHPTKHEVHFL+++ I++R++  +E  LLGSN++R FY Q +LP            P 
Sbjct: 307 VNVHPTKHEVHFLYQEEIVDRIKQQVEAQLLGSNSTRTFYKQLRLP----------GAPD 356

Query: 66  STSSNTNNTTTTTTPAYKLVRTDASEQKLDRFLSKYIADQRATSKQTSNKK--------- 116
              + + + T    P  +LVRTDA+EQKLD+FL+  +      S  +S +          
Sbjct: 357 LDETQSADKTQRIYPK-ELVRTDATEQKLDKFLAPLVKSDSGASSSSSQEAPRLPEESFR 415

Query: 117 ----YKRREIKLSSVRDLRGEIEKQKSSQLCEVFRKLSFVGCATPCMCLIQHETKLYIVN 172
                K RE++LSSV D+R  +E+Q S QL    + L +VGC      L QHET LY+ N
Sbjct: 416 VTAARKSREVRLSSVLDMRQRVERQCSVQLRSTLKNLVYVGCVDEKRALFQHETHLYLCN 475

Query: 173 VTYVLEELFYQLMLHDFGN 191
                EELFYQ M+++F N
Sbjct: 476 TRAFSEELFYQRMIYEFQN 494

Source: Drosophila yakuba

Species: Drosophila yakuba

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194757576|ref|XP_001961040.1| GF13669 [Drosophila ananassae] gi|190622338|gb|EDV37862.1| GF13669 [Drosophila ananassae]

 Score =  139 bits (350), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 81/201 (40%), Positives = 112/201 (55%), Gaps = 28/201 (13%)

Query: 6   VNVHPTKHEVHFLHEDTIIERVQSMLEKTLLGSNTSRVFYTQTKLPSFSTEPPTTKAKPS 65
           VNVHPTKHEVHFL++D I+ER++  LE  LLGSN++R FY Q +LP            P 
Sbjct: 306 VNVHPTKHEVHFLYQDEIVERLKEQLEARLLGSNSTRTFYKQLRLP----------GAPD 355

Query: 66  STSSNTNNTTTTTTPAYKLVRTDASEQKLDRFLSKYIADQRATS---------------K 110
              +   + T    P  +LVRTDASEQKL++F +  +      S               +
Sbjct: 356 LDETQPGDKTQRVYPK-ELVRTDASEQKLEKFFTSLVKSDSGVSSTSSEGAPPLPEESFR 414

Query: 111 QTSNKKYKRREIKLSSVRDLRGEIEKQKSSQLCEVFRKLSFVGCATPCMCLIQHETKLYI 170
           QT+ +  K RE++LSSV D+R  +E+  S QL  + + L +VGC      L Q+ET LY+
Sbjct: 415 QTAAR--KSREVRLSSVLDMRQRVERNCSVQLRGIIKNLVYVGCVDERRALFQYETHLYL 472

Query: 171 VNVTYVLEELFYQLMLHDFGN 191
            N     EELFYQ +L++F N
Sbjct: 473 CNTRAFSEELFYQRLLYEFQN 493

Source: Drosophila ananassae

Species: Drosophila ananassae

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340375542|ref|XP_003386293.1| PREDICTED: DNA mismatch repair protein Mlh1 [Amphimedon queenslandica]

 Score =  138 bits (347), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 80/208 (38%), Positives = 119/208 (57%), Gaps = 26/208 (12%)

Query: 6   VNVHPTKHEVHFLHEDTIIERVQSMLEKTLLGSNTSRVFYTQTKLPSFSTEPPTTKAKPS 65
           VNVHPTKHEVHFLHE  I+E +Q  +E  LLG N SR +YTQT LP  S  P + +    
Sbjct: 312 VNVHPTKHEVHFLHEALIVETIQKSIEDKLLGCNESRTYYTQTHLPGTSLLPVSLEE--- 368

Query: 66  STSSNTNNTTTTTTPAYKLVRTDASEQKLDRFL-SKYIADQRATSKQT------------ 112
              S T +++   T A++ +RTD+ EQ L  F+  K + + ++    +            
Sbjct: 369 --VSMTQSSSDEKTYAHQKIRTDSKEQTLHSFVVPKELNNSQSDKASSKSVSASCKKRKS 426

Query: 113 --------SNKKYKRREIKLSSVRDLRGEIEKQKSSQLCEVFRKLSFVGCATPCMCLIQH 164
                   S K+   + I L+SV +L  E++ ++  +LC +FR+  FVGC      L+Q+
Sbjct: 427 TDSPQLSLSKKRKHHKPIHLTSVNNLIQEVKDKEHQELCSLFREHKFVGCVDQTRALVQY 486

Query: 165 ETKLYIVNVTYVLEELFYQLMLHDFGNF 192
           +TKLY++++T V +ELFYQL+L DF NF
Sbjct: 487 QTKLYLISLTKVTQELFYQLVLLDFANF 514

Source: Amphimedon queenslandica

Species: Amphimedon queenslandica

Genus: Amphimedon

Family: Niphatidae

Order: Haplosclerida

Class: Demospongiae

Phylum: Porifera

Superkingdom: Eukaryota

>gi|195332392|ref|XP_002032882.1| GM21014 [Drosophila sechellia] gi|194124852|gb|EDW46895.1| GM21014 [Drosophila sechellia]

 Score =  137 bits (345), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 83/207 (40%), Positives = 116/207 (56%), Gaps = 32/207 (15%)

Query: 4   PP----VNVHPTKHEVHFLHEDTIIERVQSMLEKTLLGSNTSRVFYTQTKLPSFSTEPPT 59
           PP    VNVHPTKHEVHFL+++ I + ++  +E  LLGSN +R FY Q +LP        
Sbjct: 301 PPQNLDVNVHPTKHEVHFLYQEEIADSIKQQVEARLLGSNATRTFYKQLRLP-------- 352

Query: 60  TKAKPSSTSSNTNNTTTTTTPAYKLVRTDASEQKLDRFLSKYI---------ADQRATS- 109
               P    + + + T    P  +LVRTD++EQKLD+FL+  +         + Q AT  
Sbjct: 353 --GAPDLDETQSADKTQRIYPK-ELVRTDSTEQKLDKFLAPLVKSDSGMSSSSSQEATRL 409

Query: 110 -----KQTSNKKYKRREIKLSSVRDLRGEIEKQKSSQLCEVFRKLSFVGCATPCMCLIQH 164
                + T+ KK   RE++LSSV D+R  +E+Q S QL    + L +VGC      L QH
Sbjct: 410 PEESFRVTAAKK--SREVRLSSVLDMRKRVERQCSVQLRSTLKNLVYVGCVDERRALFQH 467

Query: 165 ETKLYIVNVTYVLEELFYQLMLHDFGN 191
           ET+LY+ N     EELFYQ M+++F N
Sbjct: 468 ETRLYMCNTRSFSEELFYQRMIYEFQN 494

Source: Drosophila sechellia

Species: Drosophila sechellia

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	202
UNIPROTKB|B7Z821	460	MLH1 "cDNA FLJ55289, highly si	0.495	0.217	0.456	9.6e-38
MGI|MGI:101938	760	Mlh1 "mutL homolog 1 (E. coli)	0.460	0.122	0.473	2.1e-37
ZFIN|ZDB-GENE-040426-1600	725	mlh1 "mutL homolog 1, colon ca	0.504	0.140	0.451	4.9e-37
UNIPROTKB|E9PCU2	658	MLH1 "DNA mismatch repair prot	0.495	0.151	0.456	5.2e-37
UNIPROTKB|E1BQE0	757	MLH1 "Uncharacterized protein"	0.455	0.121	0.483	5.5e-37
UNIPROTKB|H0Y818	679	MLH1 "DNA mismatch repair prot	0.495	0.147	0.456	5.9e-37
UNIPROTKB|P40692	756	MLH1 "DNA mismatch repair prot	0.495	0.132	0.456	8.6e-37
UNIPROTKB|I3LT92	687	MLH1 "Uncharacterized protein"	0.490	0.144	0.485	2.6e-36
RGD|620937	757	Mlh1 "mutL homolog 1, colon ca	0.460	0.122	0.462	2.9e-36
UNIPROTKB|P97679	757	Mlh1 "DNA mismatch repair prot	0.460	0.122	0.462	2.9e-36

UNIPROTKB|B7Z821 MLH1 "cDNA FLJ55289, highly similar to DNA mismatch repair protein Mlh1" [Homo sapiens (taxid:9606)]

 Score = 231 (86.4 bits), Expect = 9.6e-38, Sum P(2) = 9.6e-38
 Identities = 47/103 (45%), Positives = 62/103 (60%)

Query:     6 VNVHPTKHEVHFLHEDTIIERVQSMLEKTLLGSNTSRVFYTQTKLPSFSTEXXXXXXXXX 65
             VNVHPTKHEVHFLHE++I+ERVQ  +E  LLGSN+SR+++TQT LP  +           
Sbjct:    64 VNVHPTKHEVHFLHEESILERVQQHIESKLLGSNSSRMYFTQTLLPGLAGPSGEMVKSTT 123

Query:    66 XXXXXXXXXXXXXXXXYKLVRTDASEQKLDRFL---SKYIADQ 105
                             +++VRTD+ EQKLD FL   SK ++ Q
Sbjct:   124 SLTSSSTSGSSDKVYAHQMVRTDSREQKLDAFLQPLSKPLSSQ 166

GO:0005524 "ATP binding" evidence=IEA

GO:0005712 "chiasma" evidence=IEA

GO:0006298 "mismatch repair" evidence=IEA

GO:0006303 "double-strand break repair via nonhomologous end joining" evidence=IEA

GO:0007060 "male meiosis chromosome segregation" evidence=IEA

GO:0007283 "spermatogenesis" evidence=IEA

GO:0008630 "intrinsic apoptotic signaling pathway in response to DNA damage" evidence=IEA

GO:0016446 "somatic hypermutation of immunoglobulin genes" evidence=IEA

GO:0032137 "guanine/thymine mispair binding" evidence=IEA

GO:0032389 "MutLalpha complex" evidence=IEA

GO:0043060 "meiotic metaphase I plate congression" evidence=IEA

GO:0045190 "isotype switching" evidence=IEA

GO:0045950 "negative regulation of mitotic recombination" evidence=IEA

GO:0048477 "oogenesis" evidence=IEA

GO:0051257 "spindle midzone assembly involved in meiosis" evidence=IEA

GO:0000239 "pachytene" evidence=IEA

GO:0000289 "nuclear-transcribed mRNA poly(A) tail shortening" evidence=IEA

GO:0000712 "resolution of meiotic recombination intermediates" evidence=IEA

GO:0000795 "synaptonemal complex" evidence=IEA

GO:0001673 "male germ cell nucleus" evidence=IEA

MGI|MGI:101938 Mlh1 "mutL homolog 1 (E. coli)" [Mus musculus (taxid:10090)]

 Score = 230 (86.0 bits), Expect = 2.1e-37, Sum P(2) = 2.1e-37
 Identities = 44/93 (47%), Positives = 57/93 (61%)

Query:     6 VNVHPTKHEVHFLHEDTIIERVQSMLEKTLLGSNTSRVFYTQTKLPSFSTEXXXXXXXXX 65
             VNVHPTKHEVHFLHE++I++RVQ  +E  LLGSN+SR+++TQT LP  +           
Sbjct:   305 VNVHPTKHEVHFLHEESILQRVQQHIESKLLGSNSSRMYFTQTLLPGLAGPSGEAARPTT 364

Query:    66 XXXXXXXXXXXXXXXXYKLVRTDASEQKLDRFL 98
                             Y++VRTD+ EQKLD FL
Sbjct:   365 GVASSSTSGSGDKVYAYQMVRTDSREQKLDAFL 397

GO:0000289 "nuclear-transcribed mRNA poly(A) tail shortening" evidence=IMP

GO:0000712 "resolution of meiotic recombination intermediates" evidence=IMP

GO:0000793 "condensed chromosome" evidence=IDA;IMP

GO:0000794 "condensed nuclear chromosome" evidence=IDA

GO:0000795 "synaptonemal complex" evidence=ISS;IDA

GO:0001673 "male germ cell nucleus" evidence=IDA

GO:0002204 "somatic recombination of immunoglobulin genes involved in immune response" evidence=IGI

GO:0003697 "single-stranded DNA binding" evidence=IBA

GO:0005524 "ATP binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISO

GO:0005694 "chromosome" evidence=IDA

GO:0005712 "chiasma" evidence=IDA

GO:0006281 "DNA repair" evidence=IMP

GO:0006298 "mismatch repair" evidence=ISO;IDA;IMP

GO:0006303 "double-strand break repair via nonhomologous end joining" evidence=IMP

GO:0006974 "response to DNA damage stimulus" evidence=IGI;IMP

GO:0007049 "cell cycle" evidence=IEA

GO:0007060 "male meiosis chromosome segregation" evidence=IMP

GO:0007126 "meiosis" evidence=IDA;TAS

GO:0007129 "synapsis" evidence=IMP

GO:0007131 "reciprocal meiotic recombination" evidence=IMP

GO:0007140 "male meiosis" evidence=IMP

GO:0007283 "spermatogenesis" evidence=IMP

GO:0008630 "intrinsic apoptotic signaling pathway in response to DNA damage" evidence=IMP

GO:0016446 "somatic hypermutation of immunoglobulin genes" evidence=IMP

GO:0016447 "somatic recombination of immunoglobulin gene segments" evidence=IMP

GO:0016887 "ATPase activity" evidence=IBA

GO:0030983 "mismatched DNA binding" evidence=IEA

GO:0032137 "guanine/thymine mispair binding" evidence=ISO;IGI

GO:0032389 "MutLalpha complex" evidence=IDA

GO:0032390 "MutLbeta complex" evidence=IBA

GO:0032407 "MutSalpha complex binding" evidence=IBA

GO:0043060 "meiotic metaphase I plate congression" evidence=IMP

GO:0043566 "structure-specific DNA binding" evidence=IDA

GO:0045132 "meiotic chromosome segregation" evidence=IMP

GO:0045190 "isotype switching" evidence=IMP

GO:0045950 "negative regulation of mitotic recombination" evidence=IMP

GO:0048477 "oogenesis" evidence=IMP

GO:0051257 "spindle midzone assembly involved in meiosis" evidence=IMP

ZFIN|ZDB-GENE-040426-1600 mlh1 "mutL homolog 1, colon cancer, nonpolyposis type 2 (E. coli)" [Danio rerio (taxid:7955)]

 Score = 222 (83.2 bits), Expect = 4.9e-37, Sum P(2) = 4.9e-37
 Identities = 51/113 (45%), Positives = 62/113 (54%)

Query:     6 VNVHPTKHEVHFLHEDTIIERVQSMLEKTLLGSNTSRVFYTQTKLPSFSTEXXXXXXXXX 65
             VNVHPTKHEVHFLHED+IIE +Q  +E  LLGSN+SR ++TQT LP  S           
Sbjct:   303 VNVHPTKHEVHFLHEDSIIESIQKHIESKLLGSNSSRTYFTQTLLPGLSASASVAKASSS 362

Query:    66 XXXXXXXXXXXXXXXXYKLVRTDASEQKLDRFL-----SKYIADQRATSKQTS 113
                             +++VRTD+  QKLD FL     S   A QR T K +S
Sbjct:   363 SADSQERVYA------HQMVRTDSKAQKLDAFLQPSASSSSTAAQRKTEKTSS 409

GO:0005524 "ATP binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0006298 "mismatch repair" evidence=IEA;IBA

GO:0030983 "mismatched DNA binding" evidence=IEA

GO:0006200 "ATP catabolic process" evidence=IBA

GO:0032389 "MutLalpha complex" evidence=IBA

GO:0016887 "ATPase activity" evidence=IBA

GO:0032390 "MutLbeta complex" evidence=IBA

GO:0032300 "mismatch repair complex" evidence=IBA

GO:0032407 "MutSalpha complex binding" evidence=IBA

GO:0003697 "single-stranded DNA binding" evidence=IBA

GO:0000795 "synaptonemal complex" evidence=IBA

GO:0005712 "chiasma" evidence=IBA

GO:0016446 "somatic hypermutation of immunoglobulin genes" evidence=IBA

GO:0007131 "reciprocal meiotic recombination" evidence=IBA

GO:0007141 "male meiosis I" evidence=IMP

GO:0043060 "meiotic metaphase I plate congression" evidence=IMP

GO:0007283 "spermatogenesis" evidence=IMP

GO:0051026 "chiasma assembly" evidence=IMP

GO:0007059 "chromosome segregation" evidence=IMP

UNIPROTKB|E9PCU2 MLH1 "DNA mismatch repair protein Mlh1" [Homo sapiens (taxid:9606)]

 Score = 231 (86.4 bits), Expect = 5.2e-37, Sum P(2) = 5.2e-37
 Identities = 47/103 (45%), Positives = 62/103 (60%)

Query:     6 VNVHPTKHEVHFLHEDTIIERVQSMLEKTLLGSNTSRVFYTQTKLPSFSTEXXXXXXXXX 65
             VNVHPTKHEVHFLHE++I+ERVQ  +E  LLGSN+SR+++TQT LP  +           
Sbjct:   207 VNVHPTKHEVHFLHEESILERVQQHIESKLLGSNSSRMYFTQTLLPGLAGPSGEMVKSTT 266

Query:    66 XXXXXXXXXXXXXXXXYKLVRTDASEQKLDRFL---SKYIADQ 105
                             +++VRTD+ EQKLD FL   SK ++ Q
Sbjct:   267 SLTSSSTSGSSDKVYAHQMVRTDSREQKLDAFLQPLSKPLSSQ 309

GO:0005634 "nucleus" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0006298 "mismatch repair" evidence=IEA

GO:0030983 "mismatched DNA binding" evidence=IEA

UNIPROTKB|E1BQE0 MLH1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 224 (83.9 bits), Expect = 5.5e-37, Sum P(2) = 5.5e-37
 Identities = 45/93 (48%), Positives = 56/93 (60%)

Query:     6 VNVHPTKHEVHFLHEDTIIERVQSMLEKTLLGSNTSRVFYTQTKLPSFSTEXXXXXXXXX 65
             VNVHPTKHEVHFLHED+I+ERVQ  +E  LLGSN+SR+++TQT LP              
Sbjct:   305 VNVHPTKHEVHFLHEDSILERVQQHVESKLLGSNSSRMYFTQTLLPGAECSSSEVVKSAA 364

Query:    66 XXXXXXXXXXXXXXXXYKLVRTDASEQKLDRFL 98
                             +++VRTD+ EQKLD FL
Sbjct:   365 SSSTAAKGTSDKVYA-HQMVRTDSREQKLDAFL 396

GO:0005524 "ATP binding" evidence=IEA

GO:0000239 "pachytene" evidence=IEA

GO:0000289 "nuclear-transcribed mRNA poly(A) tail shortening" evidence=IEA

GO:0000712 "resolution of meiotic recombination intermediates" evidence=IEA

GO:0000795 "synaptonemal complex" evidence=IEA

GO:0001673 "male germ cell nucleus" evidence=IEA

GO:0003697 "single-stranded DNA binding" evidence=IEA

GO:0005712 "chiasma" evidence=IEA

GO:0006298 "mismatch repair" evidence=IEA

GO:0006303 "double-strand break repair via nonhomologous end joining" evidence=IEA

GO:0007060 "male meiosis chromosome segregation" evidence=IEA

GO:0007283 "spermatogenesis" evidence=IEA

GO:0008630 "intrinsic apoptotic signaling pathway in response to DNA damage" evidence=IEA

GO:0016446 "somatic hypermutation of immunoglobulin genes" evidence=IEA

GO:0032137 "guanine/thymine mispair binding" evidence=IEA

GO:0032389 "MutLalpha complex" evidence=IEA

GO:0032407 "MutSalpha complex binding" evidence=IEA

GO:0043060 "meiotic metaphase I plate congression" evidence=IEA

GO:0045190 "isotype switching" evidence=IEA

GO:0045950 "negative regulation of mitotic recombination" evidence=IEA

GO:0048477 "oogenesis" evidence=IEA

GO:0051257 "spindle midzone assembly involved in meiosis" evidence=IEA

UNIPROTKB|H0Y818 MLH1 "DNA mismatch repair protein Mlh1" [Homo sapiens (taxid:9606)]

 Score = 231 (86.4 bits), Expect = 5.9e-37, Sum P(2) = 5.9e-37
 Identities = 47/103 (45%), Positives = 62/103 (60%)

Query:     6 VNVHPTKHEVHFLHEDTIIERVQSMLEKTLLGSNTSRVFYTQTKLPSFSTEXXXXXXXXX 65
             VNVHPTKHEVHFLHE++I+ERVQ  +E  LLGSN+SR+++TQT LP  +           
Sbjct:   297 VNVHPTKHEVHFLHEESILERVQQHIESKLLGSNSSRMYFTQTLLPGLAGPSGEMVKSTT 356

Query:    66 XXXXXXXXXXXXXXXXYKLVRTDASEQKLDRFL---SKYIADQ 105
                             +++VRTD+ EQKLD FL   SK ++ Q
Sbjct:   357 SLTSSSTSGSSDKVYAHQMVRTDSREQKLDAFLQPLSKPLSSQ 399

GO:0005524 "ATP binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0006298 "mismatch repair" evidence=IEA

GO:0030983 "mismatched DNA binding" evidence=IEA

UNIPROTKB|P40692 MLH1 "DNA mismatch repair protein Mlh1" [Homo sapiens (taxid:9606)]

 Score = 231 (86.4 bits), Expect = 8.6e-37, Sum P(2) = 8.6e-37
 Identities = 47/103 (45%), Positives = 62/103 (60%)

Query:     6 VNVHPTKHEVHFLHEDTIIERVQSMLEKTLLGSNTSRVFYTQTKLPSFSTEXXXXXXXXX 65
             VNVHPTKHEVHFLHE++I+ERVQ  +E  LLGSN+SR+++TQT LP  +           
Sbjct:   305 VNVHPTKHEVHFLHEESILERVQQHIESKLLGSNSSRMYFTQTLLPGLAGPSGEMVKSTT 364

Query:    66 XXXXXXXXXXXXXXXXYKLVRTDASEQKLDRFL---SKYIADQ 105
                             +++VRTD+ EQKLD FL   SK ++ Q
Sbjct:   365 SLTSSSTSGSSDKVYAHQMVRTDSREQKLDAFLQPLSKPLSSQ 407

GO:0005524 "ATP binding" evidence=IEA

GO:0000239 "pachytene" evidence=IEA

GO:0000289 "nuclear-transcribed mRNA poly(A) tail shortening" evidence=IEA

GO:0000712 "resolution of meiotic recombination intermediates" evidence=IEA

GO:0001673 "male germ cell nucleus" evidence=IEA

GO:0006303 "double-strand break repair via nonhomologous end joining" evidence=IEA

GO:0007060 "male meiosis chromosome segregation" evidence=IEA

GO:0007283 "spermatogenesis" evidence=IEA

GO:0008630 "intrinsic apoptotic signaling pathway in response to DNA damage" evidence=IEA

GO:0032137 "guanine/thymine mispair binding" evidence=IEA

GO:0043060 "meiotic metaphase I plate congression" evidence=IEA

GO:0045190 "isotype switching" evidence=IEA

GO:0045950 "negative regulation of mitotic recombination" evidence=IEA

GO:0048477 "oogenesis" evidence=IEA

GO:0051257 "spindle midzone assembly involved in meiosis" evidence=IEA

GO:0000795 "synaptonemal complex" evidence=IBA

GO:0005712 "chiasma" evidence=IBA

GO:0006298 "mismatch repair" evidence=IBA

GO:0007131 "reciprocal meiotic recombination" evidence=IBA

GO:0016446 "somatic hypermutation of immunoglobulin genes" evidence=IBA

GO:0016887 "ATPase activity" evidence=IBA

GO:0032300 "mismatch repair complex" evidence=IBA

GO:0032389 "MutLalpha complex" evidence=IBA

GO:0032390 "MutLbeta complex" evidence=IBA

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IC

GO:0032407 "MutSalpha complex binding" evidence=IDA

GO:0003697 "single-stranded DNA binding" evidence=IDA

GO:0006200 "ATP catabolic process" evidence=IBA

UNIPROTKB|I3LT92 MLH1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 229 (85.7 bits), Expect = 2.6e-36, Sum P(2) = 2.6e-36
 Identities = 50/103 (48%), Positives = 59/103 (57%)

Query:     6 VNVHPTKHEVHFLHEDTIIERVQSMLEKTLLGSNTSRVFYTQTKLPSFSTEXXXXXXXXX 65
             VNVHPTKHEVHFLHED+I+ERVQ  +E  LLGSN SR ++TQT LP   T          
Sbjct:   235 VNVHPTKHEVHFLHEDSILERVQQHIESRLLGSNASRTYFTQTLLPGL-TGPSGEAVKSA 293

Query:    66 XXXXXXXXXXXXXXXXYKLVRTDASEQKLDRFL---SKYIADQ 105
                             Y++VRTD  EQKLD FL   SK ++ Q
Sbjct:   294 ADVTPSSTGSGDKVYAYQMVRTDCREQKLDAFLQPASKSLSSQ 336

GO:0051257 "spindle midzone assembly involved in meiosis" evidence=IEA

GO:0048477 "oogenesis" evidence=IEA

GO:0045950 "negative regulation of mitotic recombination" evidence=IEA

GO:0045190 "isotype switching" evidence=IEA

GO:0043060 "meiotic metaphase I plate congression" evidence=IEA

GO:0032407 "MutSalpha complex binding" evidence=IEA

GO:0032389 "MutLalpha complex" evidence=IEA

GO:0032137 "guanine/thymine mispair binding" evidence=IEA

GO:0016446 "somatic hypermutation of immunoglobulin genes" evidence=IEA

GO:0008630 "intrinsic apoptotic signaling pathway in response to DNA damage" evidence=IEA

GO:0007283 "spermatogenesis" evidence=IEA

GO:0007060 "male meiosis chromosome segregation" evidence=IEA

GO:0006303 "double-strand break repair via nonhomologous end joining" evidence=IEA

GO:0006298 "mismatch repair" evidence=IEA

GO:0005712 "chiasma" evidence=IEA

GO:0003697 "single-stranded DNA binding" evidence=IEA

GO:0001673 "male germ cell nucleus" evidence=IEA

GO:0000795 "synaptonemal complex" evidence=IEA

GO:0000712 "resolution of meiotic recombination intermediates" evidence=IEA

GO:0000289 "nuclear-transcribed mRNA poly(A) tail shortening" evidence=IEA

GO:0000239 "pachytene" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

RGD|620937 Mlh1 "mutL homolog 1, colon cancer, nonpolyposis type 2 (E. coli)" [Rattus norvegicus (taxid:10116)]

 Score = 229 (85.7 bits), Expect = 2.9e-36, Sum P(2) = 2.9e-36
 Identities = 43/93 (46%), Positives = 57/93 (61%)

Query:     6 VNVHPTKHEVHFLHEDTIIERVQSMLEKTLLGSNTSRVFYTQTKLPSFSTEXXXXXXXXX 65
             VNVHPTKHEVHFLHE++I+ERVQ  +E  LLGSN+SR+++TQT LP  +           
Sbjct:   305 VNVHPTKHEVHFLHEESILERVQQHIESKLLGSNSSRMYFTQTLLPGLAGPSGEAVKSTT 364

Query:    66 XXXXXXXXXXXXXXXXYKLVRTDASEQKLDRFL 98
                             Y++VRTD+ +QKLD F+
Sbjct:   365 GIASSSTSGSGDKVHAYQMVRTDSRDQKLDAFM 397

GO:0000239 "pachytene" evidence=IEA;ISO

GO:0000289 "nuclear-transcribed mRNA poly(A) tail shortening" evidence=IEA;ISO

GO:0000712 "resolution of meiotic recombination intermediates" evidence=IEA;ISO

GO:0000793 "condensed chromosome" evidence=ISO

GO:0000794 "condensed nuclear chromosome" evidence=ISO

GO:0000795 "synaptonemal complex" evidence=IEA;ISO;IDA

GO:0001666 "response to hypoxia" evidence=IEP

GO:0001673 "male germ cell nucleus" evidence=IEA;ISO

GO:0002204 "somatic recombination of immunoglobulin genes involved in immune response" evidence=ISO

GO:0003674 "molecular_function" evidence=ND

GO:0003697 "single-stranded DNA binding" evidence=IEA;ISO;IBA

GO:0005524 "ATP binding" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0005694 "chromosome" evidence=ISO

GO:0005712 "chiasma" evidence=IEA;ISO;IBA

GO:0006200 "ATP catabolic process" evidence=IBA

GO:0006281 "DNA repair" evidence=ISO

GO:0006298 "mismatch repair" evidence=IEA;ISO;IBA

GO:0006303 "double-strand break repair via nonhomologous end joining" evidence=IEA;ISO

GO:0006974 "response to DNA damage stimulus" evidence=ISO

GO:0007060 "male meiosis chromosome segregation" evidence=IEA;ISO

GO:0007126 "meiosis" evidence=ISO

GO:0007131 "reciprocal meiotic recombination" evidence=ISO;IBA

GO:0007140 "male meiosis" evidence=ISO

GO:0007283 "spermatogenesis" evidence=IEA;IEP;ISO

GO:0008630 "intrinsic apoptotic signaling pathway in response to DNA damage" evidence=IEA;ISO

GO:0009636 "response to toxic substance" evidence=IEP

GO:0016446 "somatic hypermutation of immunoglobulin genes" evidence=IEA;ISO;IBA

GO:0016447 "somatic recombination of immunoglobulin gene segments" evidence=ISO

GO:0016887 "ATPase activity" evidence=IBA

GO:0030983 "mismatched DNA binding" evidence=IEA

GO:0032137 "guanine/thymine mispair binding" evidence=IEA;ISO

GO:0032300 "mismatch repair complex" evidence=IBA

GO:0032389 "MutLalpha complex" evidence=IEA;ISO;IBA

GO:0032390 "MutLbeta complex" evidence=IBA

GO:0032407 "MutSalpha complex binding" evidence=IEA;ISO;IBA

GO:0042493 "response to drug" evidence=IEP

GO:0043060 "meiotic metaphase I plate congression" evidence=IEA;ISO

GO:0043566 "structure-specific DNA binding" evidence=ISO

GO:0045132 "meiotic chromosome segregation" evidence=ISO

GO:0045190 "isotype switching" evidence=IEA;ISO

GO:0045950 "negative regulation of mitotic recombination" evidence=IEA;ISO

GO:0048477 "oogenesis" evidence=IEA;ISO

GO:0051257 "spindle midzone assembly involved in meiosis" evidence=IEA;ISO

GO:0071407 "cellular response to organic cyclic compound" evidence=IEP

UNIPROTKB|P97679 Mlh1 "DNA mismatch repair protein Mlh1" [Rattus norvegicus (taxid:10116)]

 Score = 229 (85.7 bits), Expect = 2.9e-36, Sum P(2) = 2.9e-36
 Identities = 43/93 (46%), Positives = 57/93 (61%)

Query:     6 VNVHPTKHEVHFLHEDTIIERVQSMLEKTLLGSNTSRVFYTQTKLPSFSTEXXXXXXXXX 65
             VNVHPTKHEVHFLHE++I+ERVQ  +E  LLGSN+SR+++TQT LP  +           
Sbjct:   305 VNVHPTKHEVHFLHEESILERVQQHIESKLLGSNSSRMYFTQTLLPGLAGPSGEAVKSTT 364

Query:    66 XXXXXXXXXXXXXXXXYKLVRTDASEQKLDRFL 98
                             Y++VRTD+ +QKLD F+
Sbjct:   365 GIASSSTSGSGDKVHAYQMVRTDSRDQKLDAFM 397

GO:0005524 "ATP binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9JK91	MLH1_MOUSE	No assigned EC number	0.5212	0.4554	0.1210	yes	N/A
P40692	MLH1_HUMAN	No assigned EC number	0.5053	0.4603	0.1230	yes	N/A
P97679	MLH1_RAT	No assigned EC number	0.5157	0.4504	0.1202	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	202
cd03483	127	cd03483, MutL_Trans_MLH1, MutL_Trans_MLH1: transdu	8e-12
COG0323	638	COG0323, MutL, DNA mismatch repair enzyme (predict	3e-11
pfam01119	119	pfam01119, DNA_mis_repair, DNA mismatch repair pro	2e-09
cd00782	122	cd00782, MutL_Trans, MutL_Trans: transducer domain	3e-09
PRK00095	617	PRK00095, mutL, DNA mismatch repair protein; Revie	2e-06

>gnl|CDD|239565 cd03483, MutL_Trans_MLH1, MutL_Trans_MLH1: transducer domain, having a ribosomal S5 domain 2-like fold, found in proteins similar to yeast and human MLH1 (MutL homologue 1)

 Score = 59.6 bits (145), Expect = 8e-12
 Identities = 20/31 (64%), Positives = 25/31 (80%)

Query: 6   VNVHPTKHEVHFLHEDTIIERVQSMLEKTLL 36
           VNVHPTK EVHFL+E+ IIER+Q ++E  L 
Sbjct: 97  VNVHPTKREVHFLNEEEIIERIQKLVEDKLS 127

This transducer domain is homologous to the second domain of the DNA gyrase B subunit, which is known to be important in nucleotide hydrolysis and the transduction of structural signals from ATP-binding site to the DNA breakage/reunion regions of the enzymes. MLH1 forms heterodimers with PMS2, PMS1 and MLH3. These three complexes have distinct functions in meiosis. hMLH1-hPMS2 also participates in the repair of all DNA mismatch repair (MMR) substrates. Roles for hMLH1-hPMS1 or hMLH1-hMLH3 in MMR have not been established. Cells lacking hMLH1 have a strong mutator phenotype and display microsatellite instability (MSI). Mutation in hMLH1 causes predisposition to HNPCC, Muir-Torre syndrome and Turcot syndrome (HNPCC variant). Mutation in hMLH1 accounts for a large fraction of HNPCC families. Length = 127

>gnl|CDD|223400 COG0323, MutL, DNA mismatch repair enzyme (predicted ATPase) [DNA replication, recombination, and repair]

 Score = 61.2 bits (149), Expect = 3e-11
 Identities = 36/200 (18%), Positives = 66/200 (33%), Gaps = 16/200 (8%)

Query: 6   VNVHPTKHEVHFLHEDTIIER----VQSMLEKTLLGSNTSRVFYTQTKLPSFSTEPPTTK 61
           VNVHP K EV F  E  + +     ++  L +  L    S         P  + + P+  
Sbjct: 301 VNVHPAKKEVRFSDERLVHDLIYEAIKEALAQQGLIPPASVEAPKSASQPLPAFQEPSPL 360

Query: 62  AKPSSTSSNTNNTTTTTTPAYKLVRTDASEQKLDRFLSKYIADQRATSKQTSNKKYKRRE 121
            +     S    + ++ + A  +    +         S        +            +
Sbjct: 361 PESRIQKSKVAKSGSSKSDAPSIAEPASGASPSPASPSIR----PLSKNILPESSPGSLK 416

Query: 122 IKLSSVRDLRGEIEKQKSSQLC--------EVFRKLSFVGCATPCMCLIQHETKLYIVNV 173
            +  S  DL  E  + +  Q          +VF     +G       L +HE  L +V+ 
Sbjct: 417 NEDRSYDDLLEEPAESEDKQEEAEQKAISEDVFPLGEAIGQVHGTYILAEHEDGLVLVDQ 476

Query: 174 TYVLEELFYQLMLHDFGNFG 193
               E + Y+ + ++ GN G
Sbjct: 477 HAAHERILYEKLKNELGNVG 496

Length = 638

>gnl|CDD|201604 pfam01119, DNA_mis_repair, DNA mismatch repair protein, C-terminal domain

 Score = 52.9 bits (128), Expect = 2e-09
 Identities = 11/31 (35%), Positives = 17/31 (54%)

Query: 6   VNVHPTKHEVHFLHEDTIIERVQSMLEKTLL 36
           VNVHP K EV F  E  + + ++  + + L 
Sbjct: 89  VNVHPAKREVRFRDEREVHDFIEEAVREALA 119

This family represents the C-terminal domain of the mutL/hexB/PMS1 family. This domain has a ribosomal S5 domain 2-like fold. Length = 119

>gnl|CDD|238405 cd00782, MutL_Trans, MutL_Trans: transducer domain, having a ribosomal S5 domain 2-like fold, conserved in the C-terminal domain of DNA mismatch repair (MutL/MLH1/PMS2) family

 Score = 52.9 bits (128), Expect = 3e-09
 Identities = 14/30 (46%), Positives = 19/30 (63%)

Query: 6   VNVHPTKHEVHFLHEDTIIERVQSMLEKTL 35
           VNVHPTK EV F  E+ ++E ++  L   L
Sbjct: 93  VNVHPTKREVRFSDEEEVLELIREALRSAL 122

This transducer domain is homologous to the second domain of the DNA gyrase B subunit, which is known to be important in nucleotide hydrolysis and the transduction of structural signals from ATP-binding site to the DNA breakage/reunion regions of the enzymes. Included in this group are proteins similar to human MLH1, hPMS2, hPMS1, hMLH3 and E. coli MutL, MLH1 forms heterodimers with PMS2, PMS1 and MLH3. These three complexes have distinct functions in meiosis. hMLH1-hPMS2 also participates in the repair of all DNA mismatch repair (MMR) substrates. Roles for hMLH1-hPMS1 or hMLH1-hMLH3 in MMR have not been established. Cells lacking either hMLH1 or hPMS2 have a strong mutator phenotype and display microsatellite instability (MSI). Mutation in hMLH1 causes predisposition to HNPCC, Muir-Torre syndrome and Turcot syndrome (HNPCC variant). Mutation in hPMS2 causes predisposition to HPNCC and Turcot syndrome. Mutation in hMLH1 accounts for a large fraction of HNPCC families. There is no convincing evidence to support hPMS1 having a role in HNPCC predisposition. It has been suggested that hMLH3 may be a low risk gene for colorectal cancer; however there is little evidence to support it having a role in classical HNPCC. It has been suggested that during initiation of DNA mismatch repair in E. coli, the mismatch recognition protein MutS recruits MutL in the presence of ATP. The MutS(ATP)-MutL ternary complex formed, then recruits the latent endonuclease MutH. Length = 122

>gnl|CDD|234630 PRK00095, mutL, DNA mismatch repair protein; Reviewed

 Score = 47.5 bits (114), Expect = 2e-06
 Identities = 30/189 (15%), Positives = 63/189 (33%), Gaps = 8/189 (4%)

Query: 6   VNVHPTKHEVHFLHEDTIIERVQSMLEKTLLGSNTSRVFYTQTKLPSFSTEPPTTKAKPS 65
           VNVHP KHEV F  E  + + +   +++ L  S             +         A+P 
Sbjct: 296 VNVHPAKHEVRFRDERLVHDLIVQAIQEALAQSGLI--------PAAAGANQVLEPAEPE 347

Query: 66  STSSNTNNTTTTTTPAYKLVRTDASEQKLDRFLSKYIADQRATSKQTSNKKYKRREIKLS 125
                      + +       + A  ++ +    +  A++       S  +        +
Sbjct: 348 PLPLQQTPLYASGSSPPASSPSSAPPEQSEESQEESSAEKNPLQPNASQSEAAAAASAEA 407

Query: 126 SVRDLRGEIEKQKSSQLCEVFRKLSFVGCATPCMCLIQHETKLYIVNVTYVLEELFYQLM 185
           +        E  ++++  + F     +G       L ++E  LY+V+     E L Y+ +
Sbjct: 408 AAAAPAAAPEPAEAAEEADSFPLGYALGQLHGTYILAENEDGLYLVDQHAAHERLLYEQL 467

Query: 186 LHDFGNFGV 194
                  G+
Sbjct: 468 KDKLAEVGL 476

Length = 617

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	202
KOG1979|consensus	694		100.0
COG0323	638	MutL DNA mismatch repair enzyme (predicted ATPase)	99.81
PRK00095	617	mutL DNA mismatch repair protein; Reviewed	99.58
PF08676	144	MutL_C: MutL C terminal dimerisation domain; Inter	98.89
smart00853	136	MutL_C MutL C terminal dimerisation domain. MutL a	98.72
KOG1978|consensus	672		96.81

>KOG1979|consensus

Probab=100.00  E-value=1.5e-45  Score=338.71  Aligned_cols=198  Identities=37%  Similarity=0.599  Sum_probs=162.6

Q ss_pred             CCCccccCCCCCceeeccchHHHHHHHHHHHHHhccCCCCceeecccccCCCCCCCCCCCCCCCCCCCCCCCCCCccCCC
Q psy1958           2 DQPPVNVHPTKHEVHFLHEDTIIERVQSMLEKTLLGSNTSRVFYTQTKLPSFSTEPPTTKAKPSSTSSNTNNTTTTTTPA   81 (202)
Q Consensus         2 ~~vDvNVHPtK~eV~f~~e~~i~~~i~~~~~~~l~~~~~~~~~~~Q~llp~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~   81 (202)
                      ++|||||||||+||+|+++++|++.|++.|++.|.+.+.+|+|..|.++|+..+..+. ..+++-. +.+.+.++.|+|+
T Consensus       303 ~~vDVNVHPTK~eV~FL~qEeIie~I~~~ie~~L~~~d~er~~~~q~~iP~~~~~~~e-r~~~~~~-~~~s~~ks~k~~~  380 (694)
T KOG1979|consen  303 ENVDVNVHPTKREVHFLNQEEIIERICQQIEERLSALDTERTFLKQVMIPGPSTLKSE-RNKPSLK-QSPSAQKSDKRYE  380 (694)
T ss_pred             HHcccccCCCcceeEeecHHHHHHHHHHHHHHHHhccCcccchhhhhcccCCcccccc-ccCcccc-ccccccccchhcc
Confidence            4799999999999999999999999999999999999999999999999987655221 1111100 1112336678999


Q ss_pred             CCccccCcccccccchhhhhhcccccc--------------cc-cc------cc---cccccee-eecchHHHHHHHHHH
Q psy1958          82 YKLVRTDASEQKLDRFLSKYIADQRAT--------------SK-QT------SN---KKYKRRE-IKLSSVRDLRGEIEK  136 (202)
Q Consensus        82 ~~~VRtD~~~~~l~~f~~~~~~~~~~~--------------~~-~~------~~---~~~~~~~-~~ltSv~~L~~ei~~  136 (202)
                      ++|||||+++++|++|+++.....+++              ++ .+      .+   ....+++ ++|+||+.||++|..
T Consensus       381 ~~mVRtDsse~ki~~fl~~~~~~~~s~~~~nes~~~~~s~~~~e~s~~p~dd~r~~~~~~~~rE~~~L~Si~~Lr~eV~~  460 (694)
T KOG1979|consen  381 NKMVRTDSSERKIDSFLSPLTQVGSSNSTGNESEQGDDSSLSNENSRLPEDDVRFEYTAKTPRERFRLESIKKLRKEVID  460 (694)
T ss_pred             cceeeccccccchhhhhCCccccCcccccccccccccccccccccccCccchhhhhhccccchhccchhhHHHHHHHHHh
Confidence            999999999999999997544311100              00 00      00   0112334 999999999999999


Q ss_pred             hcChhHHHhccCcEEEEEEcCcEEEEEeCCeEEEEehHHHHHHHHHHHHHHHcCCCceeeecCCC
Q psy1958         137 QKSSQLCEVFRKLSFVGCATPCMCLIQHETKLYIVNVTYVLEELFYQLMLHDFGNFGVFRFEGSF  201 (202)
Q Consensus       137 ~~~~~l~~~~~~~~~VG~v~~~y~LiQ~~~~LyLvd~~~~~ee~~YQ~~l~~fgn~~~~~l~~p~  201 (202)
                      ++|..++++|++|+|||++|+.++|+||+++||+||+..+++|+|||+++.+|||||.++|++|+
T Consensus       461 ~~h~~l~e~~~n~~yVG~vd~~~alvQh~t~Ly~~d~~~ls~ElfYQi~i~dF~Nfg~~~l~~p~  525 (694)
T KOG1979|consen  461 SCHVVLTEMFRNLSYVGVVDERTALVQHGTSLYLCDTVSLSKELFYQILITDFGNFGKIRLSEPL  525 (694)
T ss_pred             hccHHHHHHHHhcceeeeechhhhhhhcCceEEEechHHHHHHHHHHHHHHHhcccceeecCCCc
Confidence            99999999999999999999999999999999999999999999999999999999999999985

>COG0323 MutL DNA mismatch repair enzyme (predicted ATPase) [DNA replication, recombination, and repair]

Probab=99.81  E-value=2e-19  Score=171.80  Aligned_cols=57  Identities=21%  Similarity=0.306  Sum_probs=51.1

Q ss_pred             HhccCcEEEEEEcCcEEEEEeCCeEEEEehHHHHHHHHHHHHHHHcCCC-ceeeecCC
Q psy1958         144 EVFRKLSFVGCATPCMCLIQHETKLYIVNVTYVLEELFYQLMLHDFGNF-GVFRFEGS  200 (202)
Q Consensus       144 ~~~~~~~~VG~v~~~y~LiQ~~~~LyLvd~~~~~ee~~YQ~~l~~fgn~-~~~~l~~p  200 (202)
                      +.++.+.++||++++|+|+|++++|||||+|++||+++|+.+...+++. ..+.|.-|
T Consensus       447 ~~~~~~~~i~q~~~~yil~e~~~~L~lvDqhaa~Eri~ye~l~~~~~~~~~~Q~LliP  504 (638)
T COG0323         447 DVFPLGEAIGQVHGTYILAEHEDGLVLVDQHAAHERILYEKLKNELGNVGELQPLLIP  504 (638)
T ss_pred             cccccceEEEEecceEEEEEeCCCEEEEEhHHhHHHHHHHHHHHHhcccccccccccC
Confidence            5789999999999999999999999999999999999999999999998 44444444

>PRK00095 mutL DNA mismatch repair protein; Reviewed

Probab=99.58  E-value=2.2e-14  Score=137.06  Aligned_cols=58  Identities=17%  Similarity=0.227  Sum_probs=51.2

Q ss_pred             HhccCcEEEEEEcCcEEEEEeCCeEEEEehHHHHHHHHHHHHHHHcCC--CceeeecCCC
Q psy1958         144 EVFRKLSFVGCATPCMCLIQHETKLYIVNVTYVLEELFYQLMLHDFGN--FGVFRFEGSF  201 (202)
Q Consensus       144 ~~~~~~~~VG~v~~~y~LiQ~~~~LyLvd~~~~~ee~~YQ~~l~~fgn--~~~~~l~~p~  201 (202)
                      +.++.+.++||++++|+|++.+++|||||+|+||||++|++++..+++  ...+.|..|+
T Consensus       426 ~~~~~~~vigQv~~~YIl~e~~~~L~iIDQHAAhERI~yE~l~~~~~~~~~~~Q~LL~P~  485 (617)
T PRK00095        426 DSFPLGYALGQLHGTYILAENEDGLYLVDQHAAHERLLYEQLKDKLAEVGLASQPLLIPL  485 (617)
T ss_pred             ccCcCceEeEEEcCEEEEEEeCCcEEEEEHHHHHHHHHHHHHHHHhccCCCcccccccCe
Confidence            345667899999999999999999999999999999999999999865  6677777775

>PF08676 MutL_C: MutL C terminal dimerisation domain; InterPro: IPR014790 MutL and MutS are key components of the DNA repair machinery that corrects replication errors []

Probab=98.89  E-value=3.8e-09  Score=82.81  Aligned_cols=53  Identities=17%  Similarity=0.213  Sum_probs=45.9

Q ss_pred             CcEEEEEEcCcEEEEEeCCeEEEEehHHHHHHHHHHHHHHHcCCC-ceeeecCC
Q psy1958         148 KLSFVGCATPCMCLIQHETKLYIVNVTYVLEELFYQLMLHDFGNF-GVFRFEGS  200 (202)
Q Consensus       148 ~~~~VG~v~~~y~LiQ~~~~LyLvd~~~~~ee~~YQ~~l~~fgn~-~~~~l~~p  200 (202)
                      -..++|+++++|+|++.+++|||||+|+||||+.|++++.++.+- .++.|..|
T Consensus         2 ~~~vlgq~~~~yil~~~~~~L~liDqHAAhERi~~E~l~~~~~~~~~~q~Ll~P   55 (144)
T PF08676_consen    2 LLKVLGQLDNKYILAESEDGLYLIDQHAAHERILYEKLLKQLEEGEQSQPLLFP   55 (144)
T ss_dssp             T-EEEEEETTTEEEEEETTEEEEEEHHHHHHHHHHHHHHHHCCHCS-EEEEEEE
T ss_pred             ceeeHhHhCCEEEEEEeCCCEEEEEHHHHHHHHHHHHHHHhhccCCCceecCCC
Confidence            468999999999999999999999999999999999999999654 66666555

MutS recognises mispaired or unpaired bases in a DNA duplex and in the presence of ATP, recruits MutL to form a DNA signalling complex for repair. The N-terminal region of MutL contains the ATPase domain and the C-terminal is involved in dimerisation []. ; GO: 0005524 ATP binding, 0006298 mismatch repair; PDB: 3NCV_B 1X9Z_B 3GAB_C 3KDK_A 3KDG_A.

>smart00853 MutL_C MutL C terminal dimerisation domain

Probab=98.72  E-value=3.2e-08  Score=76.49  Aligned_cols=53  Identities=11%  Similarity=0.126  Sum_probs=45.2

Q ss_pred             cEEEEEEcCcEEEEEeCCeEEEEehHHHHHHHHHHHHHHHcCC--C-ceeeecCCC
Q psy1958         149 LSFVGCATPCMCLIQHETKLYIVNVTYVLEELFYQLMLHDFGN--F-GVFRFEGSF  201 (202)
Q Consensus       149 ~~~VG~v~~~y~LiQ~~~~LyLvd~~~~~ee~~YQ~~l~~fgn--~-~~~~l~~p~  201 (202)
                      +.++|+++++|++++.+++||+||+|+||||+.|++++..+..  . ..+.|-.|+
T Consensus         2 ~~~l~qv~~~yil~~~~~~l~liDqhaA~ERi~~e~l~~~~~~~~~~~~Q~Ll~P~   57 (136)
T smart00853        2 GRVLGQVHGTYILAESEDGLVLIDQHAAHERILYEQLKAKLQAGLLEKSQPLLIPV   57 (136)
T ss_pred             ccEEEEEcCEEEEEEcCCCEEEEEhHHHHHHHHHHHHHHHHhcCCCccccccCCCE
Confidence            5689999999999999999999999999999999999998733  3 256666654

MutL and MutS are key components of the DNA repair machinery that corrects replication errors. MutS recognises mispaired or unpaired bases in a DNA duplex and in the presence of ATP, recruits MutL to form a DNA signaling complex for repair. The N terminal region of MutL contains the ATPase domain and the C terminal is involved in dimerisation.

>KOG1978|consensus

Probab=96.81  E-value=0.0058  Score=58.98  Aligned_cols=46  Identities=15%  Similarity=0.252  Sum_probs=42.6

Q ss_pred             HhccCcEEEEEEcCcEEEEEeCCeEEEEehHHHHHHHHHHHHHHHc
Q psy1958         144 EVFRKLSFVGCATPCMCLIQHETKLYIVNVTYVLEELFYQLMLHDF  189 (202)
Q Consensus       144 ~~~~~~~~VG~v~~~y~LiQ~~~~LyLvd~~~~~ee~~YQ~~l~~f  189 (202)
                      ..|..+..+||.+.-++++-.+.+|++||+||+-|.+.|+.++..+
T Consensus       484 ~df~~meiigqfNlgFIi~~l~~dlfIvdqha~dEk~Nfe~l~~~~  529 (672)
T KOG1978|consen  484 ADFSRMEIIGQFNLGFIIVKLEKDLFIVDQHASDEKRNFERLQSTT  529 (672)
T ss_pred             cchhhcceeeeccccceeeeccCceEEeccchhhhhhhHHHHHHhc
Confidence            3678888999999999999999999999999999999999999876

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	202
3rbn_A	284	Crystal Structure Of Mutl Protein Homolog 1 Isoform		4e-17
3na3_A	348	Mutl Protein Homolog 1 Isoform 1 From Homo Sapiens		1e-13
4fmn_A	288	Structure Of The C-terminal Domain Of The Saccharom		5e-09
4e4w_A	285	Structure Of The C-terminal Domain Of The Saccharom		6e-09

>pdb|3RBN|A Chain A, Crystal Structure Of Mutl Protein Homolog 1 Isoform 1 [homo Sapiens] Length = 284

Iteration: 1
 Score = 84.3 bits (207), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 42/93 (45%), Positives = 57/93 (61%)
Query: 105 QRATSKQTSNKKYKRREIKLSSVRDLRGEIEKQKSSQLCEVFRKLSFVGCATPCMCLIQH 164
           Q +  + T+    +RR I L+SV  L+ EI +Q    L E     SFVGC  P   L QH
Sbjct: 17  QGSRKEXTAACTPRRRIINLTSVLSLQEEINEQGHEVLREXLHNHSFVGCVNPQWALAQH 76
Query: 165 ETKLYIVNVTYVLEELFYQLMLHDFGNFGVFRF 197
           +TKLY++N T + EELFYQ++++DF NFGV R 
Sbjct: 77  QTKLYLLNTTKLSEELFYQILIYDFANFGVLRL 109

>pdb|3NA3|A Chain A, Mutl Protein Homolog 1 Isoform 1 From Homo Sapiens Length = 348

Iteration: 1
 Score = 72.8 bits (177), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 31/43 (72%), Positives = 39/43 (90%)
Query: 6   VNVHPTKHEVHFLHEDTIIERVQSMLEKTLLGSNTSRVFYTQT 48
           VNVHPTKHEVHFLHE++I+ERVQ  +E  LLGSN+SR+++TQT
Sbjct: 306 VNVHPTKHEVHFLHEESILERVQQHIESKLLGSNSSRMYFTQT 348

>pdb|4FMN|A Chain A, Structure Of The C-terminal Domain Of The Saccharomyces Cerevisiae Mutl Alpha (mlh1/pms1) Heterodimer Bound To A Fragment Of Ntg2 Length = 288

Iteration: 1
 Score = 57.4 bits (137), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 31/106 (29%), Positives = 55/106 (51%), Gaps = 7/106 (6%)
Query: 102 IADQRATSKQTSNKKY-----KRREIKLSSVRDLRGEIEKQKSSQLCEVFRKLSFVGCAT 156
           +AD    +   S   Y     +R  + L+S++ LR +++     +L ++F  L++VG   
Sbjct: 3   MADDEKNALPISKDGYIRVPKERVNVNLTSIKKLREKVDDSIHRELTDIFANLNYVGVVD 62
Query: 157 P--CMCLIQHETKLYIVNVTYVLEELFYQLMLHDFGNFGVFRFEGS 200
               +  IQH+ KL++++   V  ELFYQ+ L DF NFG    + +
Sbjct: 63  EERRLAAIQHDLKLFLIDYGSVCYELFYQIGLTDFANFGKINLQST 108

>pdb|4E4W|A Chain A, Structure Of The C-terminal Domain Of The Saccharomyces Cerevisiae Mutl Alpha (mlh1/pms1) Heterodimer Length = 285

Iteration: 1
 Score = 57.0 bits (136), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 31/105 (29%), Positives = 54/105 (51%), Gaps = 7/105 (6%)
Query: 103 ADQRATSKQTSNKKY-----KRREIKLSSVRDLRGEIEKQKSSQLCEVFRKLSFVGCATP 157
           AD    +   S   Y     +R  + L+S++ LR +++     +L ++F  L++VG    
Sbjct: 1   ADDEKNALPISKDGYIRVPKERVNVNLTSIKKLREKVDDSIHRELTDIFANLNYVGVVDE 60
Query: 158 --CMCLIQHETKLYIVNVTYVLEELFYQLMLHDFGNFGVFRFEGS 200
              +  IQH+ KL++++   V  ELFYQ+ L DF NFG    + +
Sbjct: 61  ERRLAAIQHDLKLFLIDYGSVCYELFYQIGLTDFANFGKINLQST 105

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	202
3rbn_A	284	DNA mismatch repair protein MLH1; structural genom	1e-29
3na3_A	348	DNA mismatch repair protein MLH1; MUTL protein hom	1e-16
3h4l_A	367	DNA mismatch repair protein PMS1; ATP binding, DNA	4e-09
1h7s_A	365	PMS1 protein homolog 2; DNA repair, GHL ATPase, mi	2e-08
1b63_A	333	MUTL; DNA mismatch repair, ATPase; HET: ANP; 1.90A	1e-04

>3rbn_A DNA mismatch repair protein MLH1; structural genomics, structural genomics consortium, SGC, DN mismatch repair, endonucleases, protein binding; HET: DNA; 2.16A {Homo sapiens} Length = 284

 Score =  109 bits (274), Expect = 1e-29
 Identities = 41/87 (47%), Positives = 55/87 (63%)

Query: 112 TSNKKYKRREIKLSSVRDLRGEIEKQKSSQLCEVFRKLSFVGCATPCMCLIQHETKLYIV 171
           T+    +RR I L+SV  L+ EI +Q    L E+    SFVGC  P   L QH+TKLY++
Sbjct: 24  TAACTPRRRIINLTSVLSLQEEINEQGHEVLREMLHNHSFVGCVNPQWALAQHQTKLYLL 83

Query: 172 NVTYVLEELFYQLMLHDFGNFGVFRFE 198
           N T + EELFYQ++++DF NFGV R  
Sbjct: 84  NTTKLSEELFYQILIYDFANFGVLRLS 110

>3na3_A DNA mismatch repair protein MLH1; MUTL protein homolog 1, DNA damag repair, structural genomics consortium, SGC, protein bindin; HET: DNA ATP; 2.50A {Homo sapiens} Length = 348

 Score = 75.6 bits (187), Expect = 1e-16
 Identities = 31/43 (72%), Positives = 39/43 (90%)

Query: 6   VNVHPTKHEVHFLHEDTIIERVQSMLEKTLLGSNTSRVFYTQT 48
           VNVHPTKHEVHFLHE++I+ERVQ  +E  LLGSN+SR+++TQT
Sbjct: 306 VNVHPTKHEVHFLHEESILERVQQHIESKLLGSNSSRMYFTQT 348

>3h4l_A DNA mismatch repair protein PMS1; ATP binding, DNA repair, DNA damage, nucleus, phosphop DNA binding protein, protein binding; HET: DNA ANP; 2.50A {Saccharomyces cerevisiae} Length = 367

 Score = 54.1 bits (131), Expect = 4e-09
 Identities = 8/36 (22%), Positives = 15/36 (41%)

Query: 6   VNVHPTKHEVHFLHEDTIIERVQSMLEKTLLGSNTS 41
           VNV P K  +   +E  +I+  ++ L         +
Sbjct: 329 VNVTPDKRVILLHNERAVIDIFKTTLSDYYNRQELA 364

>1h7s_A PMS1 protein homolog 2; DNA repair, GHL ATPase, mismatch repair, HNPCC; 1.95A {Homo sapiens} SCOP: d.14.1.3 d.122.1.2 PDB: 1h7u_A* 1ea6_A* Length = 365

 Score = 52.2 bits (126), Expect = 2e-08
 Identities = 6/30 (20%), Positives = 14/30 (46%)

Query: 6   VNVHPTKHEVHFLHEDTIIERVQSMLEKTL 35
           +NV P K ++    E  ++  +++ L    
Sbjct: 334 INVTPDKRQILLQEEKLLLAVLKTSLIGMF 363

>1b63_A MUTL; DNA mismatch repair, ATPase; HET: ANP; 1.90A {Escherichia coli K12} SCOP: d.14.1.3 d.122.1.2 PDB: 1nhh_A* 1nhi_A* 1bkn_A 1nhj_A* 1b62_A* Length = 333

 Score = 40.5 bits (96), Expect = 1e-04
 Identities = 11/30 (36%), Positives = 15/30 (50%)

Query: 6   VNVHPTKHEVHFLHEDTIIERVQSMLEKTL 35
           VNVHP KHEV F     + + +   +   L
Sbjct: 303 VNVHPAKHEVRFHQSRLVHDFIYQGVLSVL 332

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	202
3rbn_A	284	DNA mismatch repair protein MLH1; structural genom	99.92
3kdg_A	197	DNA mismatch repair protein MUTL; endonuclease, DN	99.02
3ncv_A	220	DNA mismatch repair protein MUTL; endonuclease, di	98.88
1x9z_A	188	DNA mismatch repair protein MUTL; alpha-beta fold,	98.69

>3rbn_A DNA mismatch repair protein MLH1; structural genomics, structural genomics consortium, SGC, DN mismatch repair, endonucleases, protein binding; HET: DNA; 2.16A {Homo sapiens}

Probab=99.92  E-value=3.3e-25  Score=191.26  Aligned_cols=88  Identities=45%  Similarity=0.720  Sum_probs=84.2

Q ss_pred             cccccceeeecchHHHHHHHHHHhcChhHHHhccCcEEEEEEcCcEEEEEeCCeEEEEehHHHHHHHHHHHHHHHcCCCc
Q psy1958         114 NKKYKRREIKLSSVRDLRGEIEKQKSSQLCEVFRKLSFVGCATPCMCLIQHETKLYIVNVTYVLEELFYQLMLHDFGNFG  193 (202)
Q Consensus       114 ~~~~~~~~~~ltSv~~L~~ei~~~~~~~l~~~~~~~~~VG~v~~~y~LiQ~~~~LyLvd~~~~~ee~~YQ~~l~~fgn~~  193 (202)
                      ...++++.++||||++||++|++++|.+|+++|++|+|||+||++++|+||+++|||||+.++++|+|||+++.+|||||
T Consensus        26 ~~~~~~r~~~LtSV~~Lr~ev~~~~h~~Ltei~~~~tfVG~VD~~~aLiQ~~tkLYLvd~~~l~~ElFYQ~~L~~FgNfg  105 (284)
T 3rbn_A           26 ACTPRRRIINLTSVLSLQEEINEQGHEVLREMLHNHSFVGCVNPQWALAQHQTKLYLLNTTKLSEELFYQILIYDFANFG  105 (284)
T ss_dssp             TSCBCCSCCCCHHHHHHHHHHHHHBCHHHHHHHHTCEEEEESSSSEEEEEETTEEEEEEHHHHHHHHHHHHHHHSTTCCE
T ss_pred             cCCCceeEEechhHHHHHHHHHHhcCHHHHHHHHhCeEEEEECCCeeEEEeCCeEEEecHHHHHHHHHHHHHHHHhcCCC
Confidence            34567788999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eeeecCCC
Q psy1958         194 VFRFEGSF  201 (202)
Q Consensus       194 ~~~l~~p~  201 (202)
                      .|+|++|+
T Consensus       106 ~i~L~~P~  113 (284)
T 3rbn_A          106 VLRLSEPA  113 (284)
T ss_dssp             EEEEEEEE
T ss_pred             eEeeCCCC
Confidence            99999885

>3kdg_A DNA mismatch repair protein MUTL; endonuclease, DNA damage, DNA repair, hydrolase; HET: DNA; 2.00A {Bacillus subtilis} PDB: 3gab_A* 3kdk_A*

Probab=99.02  E-value=4.9e-10  Score=91.77  Aligned_cols=57  Identities=19%  Similarity=0.214  Sum_probs=51.1

Q ss_pred             hccCcEEEEEEcCcEEEEEeCCeEEEEehHHHHHHHHHHHHHHHcC--CCceeeecCCC
Q psy1958         145 VFRKLSFVGCATPCMCLIQHETKLYIVNVTYVLEELFYQLMLHDFG--NFGVFRFEGSF  201 (202)
Q Consensus       145 ~~~~~~~VG~v~~~y~LiQ~~~~LyLvd~~~~~ee~~YQ~~l~~fg--n~~~~~l~~p~  201 (202)
                      .++.+.++||++++|+|+|.+++|||||+|+||||+.|++++.+|+  ...++.|..|+
T Consensus         5 ~~~~~~~igQ~~~~yIl~~~~~~L~lIDQHAAhERi~yE~l~~~~~~~~~~sQ~LL~P~   63 (197)
T 3kdg_A            5 RVPIMYPIGQMHGTYILAQNENGLYIIDQHAAQERIKYEYFREKVGEVEPEVQEMIVPL   63 (197)
T ss_dssp             CCCCCEEEEEETTTEEEEEETTEEEEEEHHHHHHHHHHHHHHHHHHCSSCCEEEEEEEE
T ss_pred             cCCCCeEEEEEcCEEEEEEeCCCEEEEEHHHHHHHHHHHHHHHHHccCCCCccccCCCE
Confidence            4788999999999999999999999999999999999999999985  45677776664

>3ncv_A DNA mismatch repair protein MUTL; endonuclease, dimer, hydrolase; HET: DNA; 2.40A {Neisseria gonorrhoeae}

Probab=98.88  E-value=2.7e-09  Score=89.01  Aligned_cols=59  Identities=15%  Similarity=0.055  Sum_probs=51.7

Q ss_pred             HHhccCcEEEEEEcCcEEEEEeCCeEEEEehHHHHHHHHHHHHHHHcC---CCceeeecCCC
Q psy1958         143 CEVFRKLSFVGCATPCMCLIQHETKLYIVNVTYVLEELFYQLMLHDFG---NFGVFRFEGSF  201 (202)
Q Consensus       143 ~~~~~~~~~VG~v~~~y~LiQ~~~~LyLvd~~~~~ee~~YQ~~l~~fg---n~~~~~l~~p~  201 (202)
                      .+.++...++||++++|+|+|.+++|||||+|+||||+.|++++.++.   ...++.|..|+
T Consensus        24 ~~~~p~g~vigQv~~~YIL~e~~~gL~lIDQHAAhERi~yE~l~~~~~~~~~~~sQ~LL~P~   85 (220)
T 3ncv_A           24 SELPPLGFAIAQLLGIYILAQAEDSLLLIDMHAAAERVNYEKMKRQRQENGNLQSQHLLIPV   85 (220)
T ss_dssp             -CCCTTCEEEEEETTTEEEEEETTEEEEEEHHHHHHHHHHHHHHHHHHHHSSCCEEEEEEEE
T ss_pred             cCCCCCceeeeeEcCEEEEEEeCCCEEEEEHHHHHHHHHHHHHHHHHhccCCccceeeCCCe
Confidence            345688999999999999999999999999999999999999999885   46778777664

>1x9z_A DNA mismatch repair protein MUTL; alpha-beta fold, dimer, replication, signaling protein; HET: DNA MSE; 2.10A {Escherichia coli} SCOP: d.292.1.1

Probab=98.69  E-value=2.1e-08  Score=81.32  Aligned_cols=56  Identities=7%  Similarity=-0.018  Sum_probs=47.7

Q ss_pred             hccCcEEEEEEcCcEEEEEeCCeEEEEehHHHHHHHHHHHHHHHc-CCCceeeecCCC
Q psy1958         145 VFRKLSFVGCATPCMCLIQHETKLYIVNVTYVLEELFYQLMLHDF-GNFGVFRFEGSF  201 (202)
Q Consensus       145 ~~~~~~~VG~v~~~y~LiQ~~~~LyLvd~~~~~ee~~YQ~~l~~f-gn~~~~~l~~p~  201 (202)
                      ..+...++||++++|+|+|.+++|||||+|+| ||+.|++++... +....+.|..|+
T Consensus         5 ~~~~~~vlgQ~~~~yIl~~~~~~L~lIDQHAA-ERi~yE~l~~~~~~~~~~Q~LL~P~   61 (188)
T 1x9z_A            5 SQSFGRVLTIVHSDCALLERDGNISLLSLPVA-ERWLRQAQLTPGEAPVCAQPLLIPL   61 (188)
T ss_dssp             -CCCCEEEEEETTTEEEEEETTEEEEEEHHHH-HHHHHHHHHSBTTBCCCEEEEEEEE
T ss_pred             cCCCceeeeeecCEEEEEEeCCCEEEEeHHHH-HHHHHHHHHHhcCCCCCcccCCCCE
Confidence            35778999999999999999999999999999 999999999872 246677776664

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	202
d1h7sa1	134	d.14.1.3 (A:232-365) DNA mismatch repair protein P	8e-06
d1b63a1	115	d.14.1.3 (A:217-331) DNA mismatch repair protein M	3e-05

>d1h7sa1 d.14.1.3 (A:232-365) DNA mismatch repair protein PMS2 {Human (Homo sapiens) [TaxId: 9606]} Length = 134

class: Alpha and beta proteins (a+b)
fold: Ribosomal protein S5 domain 2-like
superfamily: Ribosomal protein S5 domain 2-like
family: DNA gyrase/MutL, second domain
domain: DNA mismatch repair protein PMS2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.5 bits (97), Expect = 8e-06
 Identities = 6/30 (20%), Positives = 14/30 (46%)

Query: 6   VNVHPTKHEVHFLHEDTIIERVQSMLEKTL 35
           +NV P K ++    E  ++  +++ L    
Sbjct: 103 INVTPDKRQILLQEEKLLLAVLKTSLIGMF 132

>d1b63a1 d.14.1.3 (A:217-331) DNA mismatch repair protein MutL {Escherichia coli [TaxId: 562]} Length = 115

class: Alpha and beta proteins (a+b)
fold: Ribosomal protein S5 domain 2-like
superfamily: Ribosomal protein S5 domain 2-like
family: DNA gyrase/MutL, second domain
domain: DNA mismatch repair protein MutL
species: Escherichia coli [TaxId: 562]

 Score = 39.9 bits (93), Expect = 3e-05
 Identities = 11/30 (36%), Positives = 15/30 (50%)

Query: 6   VNVHPTKHEVHFLHEDTIIERVQSMLEKTL 35
           VNVHP KHEV F     + + +   +   L
Sbjct: 85  VNVHPAKHEVRFHQSRLVHDFIYQGVLSVL 114

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00