Psyllid ID: psy1959

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290------
Protein Sequence
VRIDIQCCALNSSDLLLYNGSGDAKPTLPLVPGFEFSGTIIEKKMMTRINSSDLLLYNGSGDAKPTLPLVPGFEFSGTVIEVADTKSSSTEEDDEEDVLQVGDKVLALNKELLHGFSDQCVVHTNDVFKIPEKMTFEHAASLADSYSTAQIVFSRHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNKVLEVSGGKYANVVFEAVGGEDKTDLIRQKGAWAALTFTNEKSLVNKVLEVSGGKYANVVFEAVGGEVFKAAMH
Secondary Structure (PSIPRED)
cEEEEEEEEccccccEEEccccccccccccccccccccEEEEEEEEEEccHHHHHHHHcccccccccccccccEEEEEEEEEcccccccccccccccccccccEEEEEccccccccccccccccccEEEccccccHHHHHHHHHHHHHHHHHHHHHcccccccEEEEEccccHHHHHHHHHHHHHcccEEEEEcccHHHHHHHHHccccEEEEccccccHHHHHHHHHccccccEEEEccccccHHHHHcccccEEEEEEcccccccccEEEEEEcEEEEcccccHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccEEEEEcHHHHEEEEEEcccccEEEEEEccccccccccEEEEEEEEEEccHHHHHHccccccccccccccccHHcEEEEEccccccccccccccHHHcccccEEEEEccccccccEEEEEccHHccccccccccHHHHHHHHHHHHHHHHHHHHccccccccEEEEEEcccHHHHHHHHHHHHHcccEEEEEcccHHHHHHHHHccccEEEEccccHHHHHHHHHHHcccccEEEEEccccccHHHHHcccccEEEEEEcccccccccHHcccccEEEEcccccccHHHHHHHHc
Coil and Loop (DISEMBL)
vridiqccalnssdlllyngsgdakptlplvpgfefsgTIIEKKMMTRINSSDlllyngsgdakptlplvpgfefsgtvievadtksssteeddeedvlQVGDKVLALNKELLHGfsdqcvvhtndvfkipekmtfEHAASLADSYSTAQIVFSRHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKAKVigvcnsedktDLIRQKGAWAALTFTNEKSLVNKVLEVSGGKYANVVFEavggedktdlIRQKGAWAALTFTNEKSLVNKVLEVSGGKYANVVFEAVGGEVFKAAMH
Flexible Loop (DISEMBL)
VRIDIQCCALNSSDLLLYNGSGDAKPTLPLVPGFEFSGTIIEKKMMTRINSSDLLLYNGSGDAKPTLPLVPGFEFSGTVIEVADtksssteeddeedvLQVGDKVLALNKELLHGFSDQCVVHTNDVFKIPEKMTFEHAASLADSYSTAQIVFSRHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNKVLEVSGGKYANVVFEAVGGEDKTDLIRQKGAWAALTFTNEKSLVNKVLEVSGGKYANVVFEAVGGEVFKAAMH
Low Complexity Region (SEG)
VRIDIQCCALNSSDLLLYNGSGDAKPTLPLVPGFEFSGTIIEKKMMTRINSSDLLLYNGSGDAKPTLPLVPGFEFSGTVIEVAdtksssteeddeedVLQVGDKVLALNKELLHGFSDQCVVHTNDVFKIPEKMTFEHAASLADSYSTAQIVFSRHAKLKEKQtvlvtaaggglglaavDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNKVLEVSGGKYANVVFEAVGGEDKTDLIRQKGAWAALTFTNEKSLVNKVLEVSGGKYANVVFEAVGGEVFKAAMH
Disordered region (IsUnstruct)
**IDIQCCALNSSDLLLYNGSGDAKPTLPLVPGFEFSGTIIEKKMMTRINSSDLLLYNGSGDAKPTLPLVPGFEFSGTVIEV***************VLQVGDKVLALNKELLHGFSDQCVVHTNDVFKIPEKMTFEHAASLADSYSTAQIVFSRHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNKVLEVSGGKYANVVFEAVGGEDKTDLIRQKGAWAALTFTNEKSLVNKVLEVSGGKYANVVFEAVGGEVF*****
Disordered Region (DISOPRED)
VRIDIQCCALNSSDLLLYNGSGDAKPTLPLVPGFEFSGTIIEKKMMTRINSSDLLLYNGSGDAKPTLPLVPGFEFSGTVIEVADTKSSSTEEDDEEDVLQVGDKVLALNKELLHGFSDQCVVHTNDVFKIPEKMTFEHAASLADSYSTAQIVFSRHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNKVLEVSGGKYANVVFEAVGGEDKTDLIRQKGAWAALTFTNEKSLVNKVLEVSGGKYANVVFEAVGGEVFKA*M*
Disordered Region (DISEMBL)
VRIDIQCCALNSSDLLLYNGSGDAKPTLPLVPGFEFSGTIIEKKMMTRINSSDLLLYNGSGDAKPTLPLVPGFEFSGTVIEVA***************LQVGDKVLALNKELLHGFSDQCVVHTNDVFKIPEKMTFEHAASLADSYSTAQIVFSRHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNKVLEVSGGKYANVVFEAVGGEDKTDLIRQKGAWAALTFTNEKSLVNKVLEVSGGKYANVVFEAVGGEVFKAAMH
Disordered Region (DISPRO)
VRIDIQCCALNSSDLLLYNGSGDAKPTLPLVPGFEFSGTIIEKKMMTRINSSDLLLYNGSGDAKPTLPLVPGFEFSGTVIEVADTKSSSTEEDDEEDVLQVGDKVLALNKELLHGFSDQCVVHTNDVFKIPEKMTFEHAASLADSYSTAQIVFSRHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNKVLEVSGGKYANVVFEAVGGEDKTDLIRQKGAWAALTFTNEKSLVNKVLEVSGGKYANVVFEAVGGEVFKAAMH
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
VRIDIQCCALNSSDLLLYNGSGDAKPTLPLVPGFEFSGTIIEKKMMTRINSSDLLLYNGSGDAKPTLPLVPGFEFSGTVIEVADTKSSSTEEDDEEDVLQVGDKVLALNKELLHGFSDQCVVHTNDVFKIPEKMTFEHAASLADSYSTAQIVFSRHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNKVLEVSGGKYANVVFEAVGGEDKTDLIRQKGAWAALTFTNEKSLVNKVLEVSGGKYANVVFEAVGGEVFKAAMH
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	296	2.2.26 [Sep-21-2011]
A7RK30	365	Quinone oxidoreductase-li	N/A	N/A	0.614	0.498	0.420	7e-25
Q3UNZ8	350	Quinone oxidoreductase-li	yes	N/A	0.709	0.6	0.334	2e-22
B0BNC9	350	Quinone oxidoreductase-li	yes	N/A	0.709	0.6	0.343	2e-22
A6QQF5	349	Quinone oxidoreductase-li	yes	N/A	0.638	0.541	0.351	4e-20
Q8JFV8	484	Synaptic vesicle membrane	yes	N/A	0.652	0.398	0.307	5e-18
Q99536	393	Synaptic vesicle membrane	yes	N/A	0.611	0.460	0.306	4e-17
Q0MVN8	329	Quinone oxidoreductase OS	no	N/A	0.597	0.537	0.278	5e-15
O97764	330	Zeta-crystallin OS=Bos ta	no	N/A	0.597	0.536	0.268	5e-15
Q08257	329	Quinone oxidoreductase OS	no	N/A	0.597	0.537	0.268	2e-14
Q5R4S7	329	Quinone oxidoreductase OS	no	N/A	0.597	0.537	0.284	4e-14

>sp|A7RK30|QORL2_NEMVE Quinone oxidoreductase-like protein 2 homolog OS=Nematostella vectensis GN=v1g238856 PE=3 SV=1

 Score =  114 bits (286), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 82/195 (42%), Positives = 116/195 (59%), Gaps = 13/195 (6%)

Query: 49  INSSDLLLYNGSGDAKPTLPLVPGFEFSGTVIEVADTKSSSTEEDDEEDVLQVGDKVLAL 108
           IN +D+L   G    KP LP VPG E SG V+EV    +S          L  GD+VL +
Sbjct: 76  INFADILKCIGKYQEKPELPFVPGTEISGEVVEVGSKVTS----------LSKGDRVLGV 125

Query: 109 NKELLHGFSDQCVVHTNDVFKIPEKMTFEHAASLADSYSTAQIVFSRHAKLKEKQTVLVT 168
             +   G +++CV+    ++KIP  ++F  AA+LA SY TA I     A L+  QTVLVT
Sbjct: 126 CGQG-GGMAEECVLPQTALWKIPSSLSFTQAAALAISYGTAYIGLKHKANLQPGQTVLVT 184

Query: 169 AAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNKVLEVS 228
           AA G LGLA+VD+A  ++ AKVIG    E K  ++++ GA A + +T E ++ +KV E++
Sbjct: 185 AAAGALGLASVDLAANVFGAKVIGASRKE-KLVIVQEIGATATIDYTRE-NIKDKVKELT 242

Query: 229 GGKYANVVFEAVGGE 243
            G  ANV+ EAVGG+
Sbjct: 243 DGHGANVIMEAVGGD 257

Nematostella vectensis (taxid: 45351)
EC: 1EC: .EC: -EC: .EC: -EC: .EC: -

>sp|Q3UNZ8|QORL2_MOUSE Quinone oxidoreductase-like protein 2 OS=Mus musculus PE=2 SV=1

 Score =  107 bits (266), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 78/233 (33%), Positives = 127/233 (54%), Gaps = 23/233 (9%)

Query: 49  INSSDLLLYNGSGDAKPTLPLVPGFEFSGTVIEVADTKSSSTEEDDEEDVLQVGDKVLAL 108
           +N +D+L   G    KP LP  PG EFSG V+E     S+          ++ GD+V+ +
Sbjct: 63  VNFADILACRGQYQEKPPLPFTPGMEFSGAVLETGTDVST----------VKKGDRVIGV 112

Query: 109 NKELLHGFSDQCVVHTNDVFKIPEKMTFEHAASLADSYSTAQIVFSRHAKLKEKQTVLVT 168
           +    H  ++QC+     +++IPE ++ + AA L  SY TA +     A+++  +TVLVT
Sbjct: 113 SS--FHAMAEQCITDQKTLWRIPENVSLQDAAVLPVSYGTAILAVDHRARIQPGETVLVT 170

Query: 169 AAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNKVLEVS 228
           AA G  GLA +D+AT +++AKVI    S++K  L  Q+GA  ++ ++ + SL + V +++
Sbjct: 171 AAAGATGLAVIDVATNVFRAKVIAATGSDEKCKLAVQRGAQFSVNYS-QGSLRDAVKKLA 229

Query: 229 GGKYANVVFEAVGGEDKTDLIRQKGAWAALTFTNEKSLVNKVLEVSGGKYANV 281
           G    NV  + VGG+   + +R   AW       E  +V  VL  +GG  A+V
Sbjct: 230 GSGGVNVAIDMVGGDVFLESLRSL-AW-------EGRIV--VLGFAGGNIASV 272

Mus musculus (taxid: 10090)

EC: 1

EC: .

EC: -

EC: .

EC: -

EC: .

EC: -

>sp|B0BNC9|QORL2_RAT Quinone oxidoreductase-like protein 2 OS=Rattus norvegicus PE=2 SV=1

 Score =  106 bits (265), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 80/233 (34%), Positives = 125/233 (53%), Gaps = 23/233 (9%)

Query: 49  INSSDLLLYNGSGDAKPTLPLVPGFEFSGTVIEVADTKSSSTEEDDEEDVLQVGDKVLAL 108
           IN +D L+  G    KP LP  PG EFSG V+E     S+          ++ GD+V+ +
Sbjct: 63  INFADNLVCRGQYQEKPPLPFTPGMEFSGVVLEAGADVST----------VKKGDRVIGV 112

Query: 109 NKELLHGFSDQCVVHTNDVFKIPEKMTFEHAASLADSYSTAQIVFSRHAKLKEKQTVLVT 168
           +    H  ++QC+     +++IPE ++ + AA L  SY TA +     A+++  +TVLVT
Sbjct: 113 SN--FHSMAEQCITDQKTLWRIPENVSLQDAAVLPVSYGTAILAVDHRARIQPGETVLVT 170

Query: 169 AAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNKVLEVS 228
           AA G  GLA +D+AT ++ AKVI    S++K  L  Q+GA + + ++ + SL + V ++ 
Sbjct: 171 AAAGATGLAVIDVATNVFCAKVIAAAGSDEKCKLAMQRGAQSGVNYS-QGSLKDAVKKLV 229

Query: 229 GGKYANVVFEAVGGEDKTDLIRQKGAWAALTFTNEKSLVNKVLEVSGGKYANV 281
           G    NV  + VGG+   D +R   AW       E  +V  VL  +GG  A+V
Sbjct: 230 GSSGVNVAIDMVGGDVFLDSLRSL-AW-------EGRIV--VLGFAGGNIASV 272

Rattus norvegicus (taxid: 10116)

EC: 1

EC: .

EC: -

EC: .

EC: -

EC: .

EC: -

>sp|A6QQF5|QORL2_BOVIN Quinone oxidoreductase-like protein 2 OS=Bos taurus PE=2 SV=2

 Score = 99.0 bits (245), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 71/202 (35%), Positives = 107/202 (52%), Gaps = 13/202 (6%)

Query: 49  INSSDLLLYNGSGDAKPTLPLVPGFEFSGTVIEVADTKSSSTEEDDEEDVLQVGDKVLAL 108
           IN +D+L   G    +  LP  PG EFSG V+E     S+  E          GD+V+ L
Sbjct: 62  INFADILACQGQYQERHQLPFTPGMEFSGMVLETGTDVSTVKE----------GDRVIGL 111

Query: 109 NKELLHGFSDQCVVHTNDVFKIPEKMTFEHAASLADSYSTAQIVFSRHAKLKEKQTVLVT 168
                 G +++C+    ++++IPEK++   AA+L  SY TA       A  +  +TVLVT
Sbjct: 112 PG--FSGMAEECITDHKNLWQIPEKVSLREAAALPVSYGTAIFALEHRACTQPGETVLVT 169

Query: 169 AAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNKVLEVS 228
           AA G  GLA +D+AT I +AKVI    S++K  L  Q GA +++ ++   SL   V ++ 
Sbjct: 170 AAAGATGLAVIDVATNILQAKVIAAAGSDEKCQLAMQSGAQSSVNYSR-GSLKEAVGKLV 228

Query: 229 GGKYANVVFEAVGGEDKTDLIR 250
           G    NVV + VGG+   + +R
Sbjct: 229 GSGGVNVVIDMVGGDIFLEALR 250

Bos taurus (taxid: 9913)

EC: 1

EC: .

EC: -

EC: .

EC: -

EC: .

EC: -

>sp|Q8JFV8|VAT1_DANRE Synaptic vesicle membrane protein VAT-1 homolog OS=Danio rerio GN=vat1 PE=2 SV=1

 Score = 91.7 bits (226), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 64/208 (30%), Positives = 105/208 (50%), Gaps = 15/208 (7%)

Query: 37  SGTIIEKKMMTRINSSDLLLYNGSGDAKPTLPLVPGFEFSGTVIEVADTKSSSTEEDDEE 96
           SG ++ +  M  +N +DL+   G  D  P+ P+ PG E SG +  V +  +         
Sbjct: 98  SGEVMVRVKMCGLNFADLMARQGLYDRLPSPPVTPGMECSGVIEAVGEEVTDR------- 150

Query: 97  DVLQVGDKVLALNKELLHGFSDQCVVHTNDVFKIPEKMTFEHAASLADSYSTAQIVFSRH 156
              +VGDKVL LN+  +  + +  VV +   F +PE M+FE AA+L  +Y TA ++    
Sbjct: 151 ---KVGDKVLVLNRSGM--WQEVVVVASTHTFLMPEGMSFEEAAALPVNYITAYMMLFDF 205

Query: 157 AKLKEKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTN 216
             L+  Q+VLV  A GG+G+AA  +   +    V G   S  K ++I Q G    + +  
Sbjct: 206 GHLRPNQSVLVHMAAGGVGIAATQLCKTVNDVTVFGTA-SASKHEVISQGGVTHPIDYRT 264

Query: 217 EKSLVNKVLEVSGGKYANVVFEAVGGED 244
            +  V +V ++S  K  ++V + +GG D
Sbjct: 265 -RDYVEEVRKIS-PKGLDIVLDPLGGSD 290

Danio rerio (taxid: 7955)

EC: 1

EC: .

EC: -

EC: .

EC: -

EC: .

EC: -

>sp|Q99536|VAT1_HUMAN Synaptic vesicle membrane protein VAT-1 homolog OS=Homo sapiens GN=VAT1 PE=1 SV=2

 Score = 89.0 bits (219), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 60/196 (30%), Positives = 100/196 (51%), Gaps = 15/196 (7%)

Query: 49  INSSDLLLYNGSGDAKPTLPLVPGFEFSGTVIEVADTKSSSTEEDDEEDVLQVGDKVLAL 108
           +N +DL+   G  D  P LP+ PG E +G VI V +  S            + GD+V+ L
Sbjct: 88  LNFADLMARQGLYDRLPPLPVTPGMEGAGVVIAVGEGVSDR----------KAGDRVMVL 137

Query: 109 NKELLHGFSDQCVVHTNDVFKIPEKMTFEHAASLADSYSTAQIVFSRHAKLKEKQTVLVT 168
           N+  +  + ++  V +   F IPE MTFE AA+L  +Y TA +V      L+   +VLV 
Sbjct: 138 NRSGM--WQEEVTVPSVQTFLIPEAMTFEEAAALLVNYITAYMVLFDFGNLQPGHSVLVH 195

Query: 169 AAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNKVLEVS 228
            A GG+G+AAV +   +    V G   S  K + +++ G    + + +    V+++ ++S
Sbjct: 196 MAAGGVGMAAVQLCRTVENVTVFGTA-SASKHEALKENGVTHPIDY-HTTDYVDEIKKIS 253

Query: 229 GGKYANVVFEAVGGED 244
             K  ++V + +GG D
Sbjct: 254 -PKGVDIVMDPLGGSD 268

Possesses ATPase activity (By similarity). Plays a part in calcium-regulated keratinocyte activation in epidermal repair mechanisms. Has no effect on cell proliferation. Negatively regulates mitochondrial fusion in cooperation with mitofusin proteins (MFN1-2).

Homo sapiens (taxid: 9606)

EC: 1

EC: .

EC: -

EC: .

EC: -

EC: .

EC: -

>sp|Q0MVN8|QOR_PIG Quinone oxidoreductase OS=Sus scrofa GN=CRYZ PE=2 SV=1

 Score = 82.0 bits (201), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 53/190 (27%), Positives = 97/190 (51%), Gaps = 13/190 (6%)

Query: 49  INSSDLLLYNGSGDAKPTLPLVPGFEFSGTVIEVADTKSSSTEEDDEEDVLQVGDKVLAL 108
           +N  D  + +G+ + KP LP  PG + +G V  V +  SS           + GD+V  +
Sbjct: 47  VNPVDTYIRSGTHNMKPLLPYTPGLDVAGIVEAVGEHVSS----------FKKGDRVFTV 96

Query: 109 NKELLHGFSDQCVVHTNDVFKIPEKMTFEHAASLADSYSTAQIVFSRHAKLKEKQTVLVT 168
           +  L  G+++  +   + V+ +PEK+ F+  A++   Y TA +     A +K  + VL+ 
Sbjct: 97  ST-LSGGYAEYALAADDTVYMLPEKLDFKQGAAIGIPYFTACLALLHSACVKAGEIVLIH 155

Query: 169 AAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNKVLEVS 228
            A GG+G+AA  +A + Y  KV+G   +E+  +++ Q GA        E + ++K+ +  
Sbjct: 156 GASGGVGIAACQIA-RAYGLKVLGTAGTEEGQNIVLQNGAHEVFNH-REVNYIDKIKKSV 213

Query: 229 GGKYANVVFE 238
           G K  +V+ E
Sbjct: 214 GEKGIDVIIE 223

Does not have alcohol dehydrogenase activity. Binds NADP and acts through a one-electron transfer process. Orthoquinones, such as 1,2-naphthoquinone or 9,10-phenanthrenequinone, are the best substrates (in vitro). May act in the detoxification of xenobiotics. Interacts with (AU)-rich elements (ARE) in the 3'-UTR of target mRNA species and enhances their stability. NADPH binding interferes with mRNA binding.

Sus scrofa (taxid: 9823)

EC: 1

EC: .

EC: 6

EC: .

EC: 5

EC: .

EC: 5

>sp|O97764|QOR_BOVIN Zeta-crystallin OS=Bos taurus GN=CRYZ PE=2 SV=2

 Score = 82.0 bits (201), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 51/190 (26%), Positives = 97/190 (51%), Gaps = 13/190 (6%)

Query: 49  INSSDLLLYNGSGDAKPTLPLVPGFEFSGTVIEVADTKSSSTEEDDEEDVLQVGDKVLAL 108
           +N  D  + +G+ + KP LP  PGF+ +G +  V ++ S+           + GD+V   
Sbjct: 47  VNPVDTYIRSGTHNIKPLLPYTPGFDVAGIIEAVGESVSA----------FKKGDRVFT- 95

Query: 109 NKELLHGFSDQCVVHTNDVFKIPEKMTFEHAASLADSYSTAQIVFSRHAKLKEKQTVLVT 168
            + +  G+++  +   + V+ +PEK+ F+  A++   Y TA       A +K  ++VLV 
Sbjct: 96  TRTISGGYAEYALAADHTVYTLPEKLDFKQGAAIGIPYFTAYRALLHSACVKPGESVLVH 155

Query: 169 AAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNKVLEVS 228
            A GG+G+AA  +A + Y  KV+G  ++E+   ++ + GA        E   ++K+ +  
Sbjct: 156 GASGGVGIAACQIA-RAYGLKVLGTASTEEGQKIVLENGAHKVFNH-KEADYIDKIKKSV 213

Query: 229 GGKYANVVFE 238
           G K  +V+ E
Sbjct: 214 GEKGVDVIIE 223

Interacts with (AU)-rich elements (ARE) in the 3'-UTR of target mRNA species and enhances their stability. NADPH binding interferes with mRNA binding (By similarity). Has minimal or no quinone reductase activity. Binds strongly to single-stranded DNA.

Bos taurus (taxid: 9913)

>sp|Q08257|QOR_HUMAN Quinone oxidoreductase OS=Homo sapiens GN=CRYZ PE=1 SV=1

 Score = 79.7 bits (195), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 51/190 (26%), Positives = 95/190 (50%), Gaps = 13/190 (6%)

Query: 49  INSSDLLLYNGSGDAKPTLPLVPGFEFSGTVIEVADTKSSSTEEDDEEDVLQVGDKVLAL 108
           +N  +  + +G+   KP LP  PG + +G +  V D  S+           + GD+V   
Sbjct: 47  VNPVETYIRSGTYSRKPLLPYTPGSDVAGVIEAVGDNASA----------FKKGDRVFT- 95

Query: 109 NKELLHGFSDQCVVHTNDVFKIPEKMTFEHAASLADSYSTAQIVFSRHAKLKEKQTVLVT 168
           +  +  G+++  +   + V+K+PEK+ F+  A++   Y TA       A +K  ++VLV 
Sbjct: 96  SSTISGGYAEYALAADHTVYKLPEKLDFKQGAAIGIPYFTAYRALIHSACVKAGESVLVH 155

Query: 169 AAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNKVLEVS 228
            A GG+GLAA  +A + Y  K++G   +E+   ++ Q GA        E + ++K+ +  
Sbjct: 156 GASGGVGLAACQIA-RAYGLKILGTAGTEEGQKIVLQNGAHEVFNH-REVNYIDKIKKYV 213

Query: 229 GGKYANVVFE 238
           G K  +++ E
Sbjct: 214 GEKGIDIIIE 223

Does not have alcohol dehydrogenase activity. Binds NADP and acts through a one-electron transfer process. Orthoquinones, such as 1,2-naphthoquinone or 9,10-phenanthrenequinone, are the best substrates (in vitro). May act in the detoxification of xenobiotics. Interacts with (AU)-rich elements (ARE) in the 3'-UTR of target mRNA species. Enhances the stability of mRNA coding for BCL2. NADPH binding interferes with mRNA binding.

Homo sapiens (taxid: 9606)

EC: 1

EC: .

EC: 6

EC: .

EC: 5

EC: .

EC: 5

>sp|Q5R4S7|QOR_PONAB Quinone oxidoreductase OS=Pongo abelii GN=CRYZ PE=2 SV=1

 Score = 79.0 bits (193), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 54/190 (28%), Positives = 97/190 (51%), Gaps = 13/190 (6%)

Query: 49  INSSDLLLYNGSGDAKPTLPLVPGFEFSGTVIEVADTKSSSTEEDDEEDVLQVGDKVLAL 108
           +N  +  + +G+   KP LP  PG + +G VIE     +S+ ++         GD+V   
Sbjct: 47  VNPVETYIRSGTYSRKPLLPYTPGSDVAG-VIEAVGGNASAFKK---------GDRVFT- 95

Query: 109 NKELLHGFSDQCVVHTNDVFKIPEKMTFEHAASLADSYSTAQIVFSRHAKLKEKQTVLVT 168
           +  +  G+++  +   + V+K+PEK+ F+  A++   Y TA       A +K  ++VLV 
Sbjct: 96  SSTISGGYAEYALAADHTVYKLPEKLDFKQGAAIGIPYFTAYRALIHSAHVKAGESVLVH 155

Query: 169 AAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNKVLEVS 228
            A GG+GLAA  +A + Y  KV+G   +E+   ++ Q GA        E + ++K+ +  
Sbjct: 156 GASGGVGLAACQIA-RAYGLKVLGTAGTEEGQKIVLQNGAHEVFNH-REVNYIDKIKKYV 213

Query: 229 GGKYANVVFE 238
           G K  +V+ E
Sbjct: 214 GEKGIDVIIE 223

Does not have alcohol dehydrogenase activity. Binds NADP and acts through a one-electron transfer process. Orthoquinones, such as 1,2-naphthoquinone or 9,10-phenanthrenequinone, are the best substrates (in vitro). May act in the detoxification of xenobiotics. Interacts with (AU)-rich elements (ARE) in the 3'-UTR of target mRNA species and enhances their stability. NADPH binding interferes with mRNA binding.

Pongo abelii (taxid: 9601)

EC: 1

EC: .

EC: 6

EC: .

EC: 5

EC: .

EC: 5

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	296
328713227	359	PREDICTED: quinone oxidoreductase-like p	0.641	0.529	0.497	7e-41
242009154	355	Zeta-crystallin, putative [Pediculus hum	0.618	0.515	0.445	3e-31
156555925	407	PREDICTED: quinone oxidoreductase-like p	0.628	0.457	0.4	3e-30
332376194	351	unknown [Dendroctonus ponderosae]	0.557	0.470	0.417	4e-29
383854438	410	PREDICTED: quinone oxidoreductase-like p	0.628	0.453	0.374	7e-29
332025419	414	Quinone oxidoreductase-like protein 2 [A	0.611	0.437	0.364	2e-28
340726582	411	PREDICTED: quinone oxidoreductase-like p	0.628	0.452	0.358	5e-28
350418419	411	PREDICTED: quinone oxidoreductase-like p	0.628	0.452	0.358	2e-27
195996411	336	hypothetical protein TRIADDRAFT_52177 [T	0.648	0.571	0.404	2e-27
424863844	332	NADPH:quinone reductase [SAR86 cluster b	0.770	0.686	0.352	2e-27

>gi|328713227|ref|XP_001943069.2| PREDICTED: quinone oxidoreductase-like protein 2 homolog isoform 1 [Acyrthosiphon pisum] gi|328713229|ref|XP_003245020.1| PREDICTED: quinone oxidoreductase-like protein 2 homolog isoform 2 [Acyrthosiphon pisum]

 Score =  173 bits (439), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 97/195 (49%), Positives = 134/195 (68%), Gaps = 5/195 (2%)

Query: 49  INSSDLLLYNGSGDAKPTLPLVPGFEFSGTVIEVADTKSSSTEEDDEEDVLQVGDKVLAL 108
           +N SD L+ +G  + KP LP VPGFE  G VIE     S +T  DDEE+ + VGD+VL L
Sbjct: 62  VNMSDALICSGLSEIKPVLPYVPGFEIVGEVIE-----SKATNADDEEEDISVGDRVLVL 116

Query: 109 NKELLHGFSDQCVVHTNDVFKIPEKMTFEHAASLADSYSTAQIVFSRHAKLKEKQTVLVT 168
           NKE++ GF+++C+V   D+F IP ++++E A S+ DSY+TA I  +R A LK+  T+LVT
Sbjct: 117 NKEIMGGFAEECIVDEKDIFGIPSELSYETAVSIGDSYATALIGLARRANLKKDNTILVT 176

Query: 169 AAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNKVLEVS 228
           AA GGLGLAAVD+A  + KAKVIG C  E  T ++R KGA+ +    + +SL  +VL+ +
Sbjct: 177 AAAGGLGLAAVDIAANMCKAKVIGACRLEKNTSIVRDKGAFISFEIKSPESLCKRVLKET 236

Query: 229 GGKYANVVFEAVGGE 243
            GK  +VVF+AVGGE
Sbjct: 237 DGKGVDVVFDAVGGE 251

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242009154|ref|XP_002425357.1| Zeta-crystallin, putative [Pediculus humanus corporis] gi|212509142|gb|EEB12619.1| Zeta-crystallin, putative [Pediculus humanus corporis]

 Score =  142 bits (357), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 86/193 (44%), Positives = 125/193 (64%), Gaps = 10/193 (5%)

Query: 49  INSSDLLLYNGSGDAKPTLPLVPGFEFSGTVIEVADTKSSSTEEDDEEDVLQVGDKVLAL 108
           +N SD+ +  G  + KP LP VPG+E +G + EV         +D + +   VGDKV+ L
Sbjct: 65  VNPSDVEIVKGYHEYKPKLPFVPGYEMAGEITEVG--------KDAKLNGFNVGDKVIGL 116

Query: 109 NKELLHGFSDQCVVHTNDVFKIPEKMTFEHAASLADSYSTAQIVFSRHAKLKEKQTVLVT 168
           NKE   GF+++CVV + D + +P+ ++ +  ++L D Y TA +   R  KL+E +TVLVT
Sbjct: 117 NKESCGGFAEECVVVSKDCYHVPQGISLKECSALLDGYITALLGLVRRGKLEEGETVLVT 176

Query: 169 AAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNKVLEVS 228
           AAGGG+GLAAVD+A  +YKAKVI VC++EDK  L+R+KGA+ AL + +   LV +V   +
Sbjct: 177 AAGGGVGLAAVDLAANVYKAKVIAVCSTEDKAALVREKGAFMALKYDDH--LVKEVQNFT 234

Query: 229 GGKYANVVFEAVG 241
            GK   VVF+A G
Sbjct: 235 NGKGVKVVFDATG 247

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|156555925|ref|XP_001603606.1| PREDICTED: quinone oxidoreductase-like protein 2-like [Nasonia vitripennis]

 Score =  138 bits (347), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 78/195 (40%), Positives = 114/195 (58%), Gaps = 9/195 (4%)

Query: 49  INSSDLLLYNGSGDAKPTLPLVPGFEFSGTVIEVADTKSSSTEEDDEEDVLQVGDKVLAL 108
           +N  D+LL       + +LP VPG+E SG +IEV++    +           VGDKV+AL
Sbjct: 85  LNGLDVLLIENLYTHEQSLPFVPGYEVSGKLIEVSEGAKKAG--------YNVGDKVIAL 136

Query: 109 NKELLHGFSDQCVVHTNDVFKIPEKMTFEHAASLADSYSTAQIVFSRHAKLKEKQTVLVT 168
           NK    G ++QCV   +DV+KIP  +    A  L ++Y TA I   ++  + E+  VLV 
Sbjct: 137 NKNRFGGLAEQCVAEIDDVWKIPTSIKSIDAVCLLENYVTALIGLEQYGSISEEDMVLVN 196

Query: 169 AAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNKVLEVS 228
              GG+GLAAVD+A  I++AKVIGV  SED+ D IR +GA+ A T+  EK L+ ++ E++
Sbjct: 197 VGIGGIGLAAVDIAANIFRAKVIGVGFSEDRADKIRDRGAFHAFTY-KEKKLIQEIEEIA 255

Query: 229 GGKYANVVFEAVGGE 243
           G +    +FE   GE
Sbjct: 256 GERGIEKIFEGDSGE 270

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332376194|gb|AEE63237.1| unknown [Dendroctonus ponderosae]

 Score =  134 bits (338), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 73/175 (41%), Positives = 115/175 (65%), Gaps = 10/175 (5%)

Query: 67  LPLVPGFEFSGTVIEVADTKSSSTEEDDEEDVLQVGDKVLALNKELLHGFSDQCVVHTND 126
           LP VPG+E SG V EV     +        D + VG+KV+ L+ E   G +++CV+  +D
Sbjct: 83  LPFVPGYELSGEVSEVGREVGA--------DQISVGEKVVGLSLENFGGLAEECVLDIDD 134

Query: 127 VFKIPEKMTFEHAASLADSYSTAQIVFSRHAKLKEKQTVLVTAAGGGLGLAAVDMATKIY 186
           VF+IP ++T + AA +A  +S A   FS+ +KLKE + V++TA   GLGLAAVD+A  IY
Sbjct: 135 VFRIPTEVTTKDAAVIAYGHSLALYTFSKLSKLKENEPVVITAGPAGLGLAAVDVAANIY 194

Query: 187 KAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNKVLEVSGGKYANVVFEAVG 241
           K +VIGV ++E++ +L+R++GA+  + F+ +  LV ++L+ +  K ANVV++A G
Sbjct: 195 KTQVIGVVDTEERGELVRERGAFTTVHFSPK--LVKEILKKTENKGANVVYDAAG 247

Source: Dendroctonus ponderosae

Species: Dendroctonus ponderosae

Genus: Dendroctonus

Family: Curculionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383854438|ref|XP_003702728.1| PREDICTED: quinone oxidoreductase-like protein 2-like [Megachile rotundata]

 Score =  133 bits (335), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 73/195 (37%), Positives = 111/195 (56%), Gaps = 9/195 (4%)

Query: 49  INSSDLLLYNGSGDAKPTLPLVPGFEFSGTVIEVADTKSSSTEEDDEEDVLQVGDKVLAL 108
           +N+SD LL       +PTLP+V G+E  G +++V          + E+   +VGDKV+AL
Sbjct: 93  VNASDALLSKNLYTFEPTLPMVLGYELVGKLVQVG--------PEAEKQGYKVGDKVIAL 144

Query: 109 NKELLHGFSDQCVVHTNDVFKIPEKMTFEHAASLADSYSTAQIVFSRHAKLKEKQTVLVT 168
           NK+   G ++QC+   +DV+KIP +M    A  L D Y TA I   R   ++E   + V 
Sbjct: 145 NKDRYGGLAEQCIAEIDDVWKIPSEMKSVDAVGLLDDYVTALIALERKVSIQEDDIMFVN 204

Query: 169 AAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNKVLEVS 228
             G  +GLAAVD+AT ++KA+VI VC +ED   L R+KG  A+  F  +++L+ ++ E +
Sbjct: 205 VGGSSVGLAAVDLATNVFKAQVISVCATEDGAALAREKGVLASFKF-KDRTLLKQMEEAA 263

Query: 229 GGKYANVVFEAVGGE 243
             K    +FE   GE
Sbjct: 264 AEKDIKAIFEDADGE 278

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332025419|gb|EGI65586.1| Quinone oxidoreductase-like protein 2 [Acromyrmex echinatior]

 Score =  132 bits (332), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 70/192 (36%), Positives = 115/192 (59%), Gaps = 11/192 (5%)

Query: 49  INSSDLLLYNGSGDAKPTLPLVPGFEFSGTVIEVADTKSSSTEEDDEEDVLQVGDKVLAL 108
           +++SDLLL       +P LP++ G+E  G +IE+          + E++  ++GDKV+AL
Sbjct: 90  LSTSDLLLSQNLHTFEPKLPMILGYEIVGKLIEIG--------TEAEKNGYKIGDKVIAL 141

Query: 109 NKELLHGFSDQCVVHTNDVFKIPEKMTFEHA--ASLADSYSTAQIVFSRHAKLKEKQTVL 166
           NKE   G +++C+    D++K+P   +   A  AS+ DSY TA +   R   L E   +L
Sbjct: 142 NKERYGGLAEKCLAEVGDIWKVPSTKSANSADLASILDSYITALVALERKVSLNEDDMIL 201

Query: 167 VTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNKVLE 226
           +     G+G+AAVD+AT ++KAKVIGVC +ED  D  R+ GA+AAL + ++K L+ ++ E
Sbjct: 202 INVGLSGIGMAAVDLATNVFKAKVIGVCATEDCADRARKMGAFAALKYKDKK-LMKQIKE 260

Query: 227 VSGGKYANVVFE 238
           ++  +    +FE
Sbjct: 261 IAAERGITAIFE 272

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340726582|ref|XP_003401635.1| PREDICTED: quinone oxidoreductase-like protein 2-like [Bombus terrestris]

 Score =  131 bits (329), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 70/195 (35%), Positives = 114/195 (58%), Gaps = 9/195 (4%)

Query: 49  INSSDLLLYNGSGDAKPTLPLVPGFEFSGTVIEVADTKSSSTEEDDEEDVLQVGDKVLAL 108
           +N+SD LL       +PTLP+V G+EF G +I+V         E+ +    +VGDK++AL
Sbjct: 94  LNASDALLTKNMYTFEPTLPMVLGYEFVGKLIQVG--------EEAKGQGYRVGDKIIAL 145

Query: 109 NKELLHGFSDQCVVHTNDVFKIPEKMTFEHAASLADSYSTAQIVFSRHAKLKEKQTVLVT 168
           NK+   G ++QC+   ND++K+P ++    A SL D Y TA I   R   ++E+  +L+ 
Sbjct: 146 NKDRYGGLAEQCIADVNDIWKVPSEVKSVDAVSLLDDYITALIALERKVSIQEEDMILIN 205

Query: 169 AAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNKVLEVS 228
               G+GLAAVD+AT ++KA+VI V  +ED   L R+KG  A+  +  +K+L+ ++ E++
Sbjct: 206 VGLSGIGLAAVDLATNVFKAQVISVSATEDGAALAREKGVLASFKY-KDKTLLKQIEEIA 264

Query: 229 GGKYANVVFEAVGGE 243
                  +F+   GE
Sbjct: 265 ADNDIKEIFDDTDGE 279

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350418419|ref|XP_003491851.1| PREDICTED: quinone oxidoreductase-like protein 2-like [Bombus impatiens]

 Score =  129 bits (324), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 70/195 (35%), Positives = 113/195 (57%), Gaps = 9/195 (4%)

Query: 49  INSSDLLLYNGSGDAKPTLPLVPGFEFSGTVIEVADTKSSSTEEDDEEDVLQVGDKVLAL 108
           +N+SD LL       +PTLP+V G+EF G +I+V         E+ +    +VGDKV+AL
Sbjct: 94  LNASDALLTKNMYTFEPTLPMVLGYEFVGKLIQVG--------EEAKGQGYKVGDKVIAL 145

Query: 109 NKELLHGFSDQCVVHTNDVFKIPEKMTFEHAASLADSYSTAQIVFSRHAKLKEKQTVLVT 168
           NK+   G ++QC+   ND++K+P ++    A  L D Y TA I   R   ++E+  +L+ 
Sbjct: 146 NKDRYGGLAEQCIADVNDIWKVPSEVKSIDAVGLLDDYITALIALERKVSIQEEDMILIN 205

Query: 169 AAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNKVLEVS 228
               G+GLAAVD+AT ++KA+VI V  +ED   L R+KG  A+  +  +K+L+ ++ E++
Sbjct: 206 VGLSGIGLAAVDLATNVFKAQVISVSATEDGAALAREKGVLASFKY-KDKTLLKQIEEIA 264

Query: 229 GGKYANVVFEAVGGE 243
                  +F+   GE
Sbjct: 265 ANNDITEIFDDADGE 279

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195996411|ref|XP_002108074.1| hypothetical protein TRIADDRAFT_52177 [Trichoplax adhaerens] gi|190588850|gb|EDV28872.1| hypothetical protein TRIADDRAFT_52177 [Trichoplax adhaerens]

 Score =  129 bits (323), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 83/205 (40%), Positives = 124/205 (60%), Gaps = 13/205 (6%)

Query: 49  INSSDLLLYNGSGDAKPTLPLVPGFEFSGTVIEVADTKSSSTEEDDEEDVLQVGDKVLAL 108
           IN +D+L+  G+   KP LP +PG E +G +IE+    ++           + GDKVLAL
Sbjct: 67  INFADILMCQGAYQEKPNLPFIPGTEIAGDIIEIGSNVTT----------FKKGDKVLAL 116

Query: 109 NKELLHGFSDQCVVHTNDVFKIPEKMTFEHAASLADSYSTAQIVFSRHAKLKEKQTVLVT 168
               LHGF++QC+   +  +KIP  +++  AA+L  SY+TA + F R A+LK+ +TVLVT
Sbjct: 117 VN--LHGFAEQCITDVDATWKIPNTVSYATAATLVVSYATAYMAFDRRAELKKGETVLVT 174

Query: 169 AAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNKVLEVS 228
           AA GG GLAAVD+   ++ A VIG   S +KT L + KGA  A+ +  E+ +  +VL ++
Sbjct: 175 AAAGGTGLAAVDLGANVFGANVIGAAGSAEKTALAKVKGAMHAINY-REQDIKTEVLSIT 233

Query: 229 GGKYANVVFEAVGGEDKTDLIRQKG 253
             K  +VVF+AVGG+     +R  G
Sbjct: 234 KRKGVDVVFDAVGGDTFEKCLRCTG 258

Source: Trichoplax adhaerens

Species: Trichoplax adhaerens

Genus: Trichoplax

Phylum: Placozoa

Superkingdom: Eukaryota

>gi|424863844|ref|ZP_18287756.1| NADPH:quinone reductase [SAR86 cluster bacterium SAR86A] gi|400757165|gb|EJP71377.1| NADPH:quinone reductase [SAR86 cluster bacterium SAR86A]

 Score =  129 bits (323), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 91/258 (35%), Positives = 134/258 (51%), Gaps = 30/258 (11%)

Query: 5   IQCCALNSSDLLLYNGSGDAKPTLPLVPGFEFSGTIIEKKMMTRINSSDLLLYNGSGDAK 64
           +QC  L   D L  N   D +    L+PG      +IE K  + +N  D+L+  G    +
Sbjct: 4   LQCVELGLPDKLKVNEIADPE----LLPGH----VLIENKAAS-VNFPDVLMIQGLYQFQ 54

Query: 65  PTLPLVPGFEFSGTVIEVADTKSSSTEEDDEEDVLQVGDKVLALNKELLHGFSDQCVVHT 124
           P LP  PG E +G V+ + D         D +D+ QVGD+V A+    L  F+++ VVH 
Sbjct: 55  PELPFTPGGESAGEVLAIGD---------DVKDI-QVGDRVFAMTG--LGAFAEKIVVHE 102

Query: 125 NDVFKIPEKMTFEHAASLADSYSTAQIVFSRHAKLKEKQTVLVTAAGGGLGLAAVDMATK 184
           N V KIP+ M FE AA+L  +Y T+     + A+LKE +T+LV  A GG+GLA V++  K
Sbjct: 103 NTVMKIPDTMDFETAAALPMTYGTSLYALKQRAELKEGETLLVLGAAGGVGLATVELG-K 161

Query: 185 IYKAKVIGVCNSEDKTDLIRQKGAWAALTF-------TNEKSLVNKVLEVSGGKYANVVF 237
              A+VI   +++DK DL    GA     +         +K L +K+ E++GG  ANVV+
Sbjct: 162 AMGARVIAAASTQDKIDLCIAHGADEGFIYESGKLDKNQQKELSSKIKELTGGMGANVVY 221

Query: 238 EAVGGEDKTDLIRQKGAW 255
           + +G       IR   AW
Sbjct: 222 DPIGDNYSEPCIRAT-AW 238

Source: SAR86 cluster bacterium SAR86A

Species: SAR86 cluster bacterium SAR86A

Class: Gammaproteobacteria

Phylum: Proteobacteria

Superkingdom: Bacteria

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	296
RGD|1304982	350	RGD1304982 "similar to RIKEN c	0.709	0.6	0.291	3e-21
MGI|MGI:2448516	350	BC026585 "cDNA sequence BC0265	0.709	0.6	0.283	4.9e-21
UNIPROTKB|F1PV34	350	LOC610994 "Uncharacterized pro	0.652	0.551	0.285	1.3e-20
UNIPROTKB|J9P068	375	LOC610994 "Uncharacterized pro	0.652	0.514	0.285	1.8e-20
UNIPROTKB|F1NVJ2	347	LOC424430 "Uncharacterized pro	0.652	0.556	0.280	5.2e-18
UNIPROTKB|A6QQF5	349	A6QQF5 "Quinone oxidoreductase	0.631	0.535	0.294	7.1e-18
TIGR_CMR|SPO_1969	330	SPO_1969 "oxidoreductase, zinc	0.689	0.618	0.258	2.3e-11
TIGR_CMR|SPO_2548	330	SPO_2548 "oxidoreductase, zinc	0.652	0.584	0.279	3e-11
ZFIN|ZDB-GENE-030616-178	484	vat1 "vesicle amine transport	0.652	0.398	0.274	6e-11
UNIPROTKB|Q99536	393	VAT1 "Synaptic vesicle membran	0.685	0.516	0.244	1.6e-10

RGD|1304982 RGD1304982 "similar to RIKEN cDNA 2810025M15" [Rattus norvegicus (taxid:10116)]

 Score = 249 (92.7 bits), Expect = 3.0e-21, P = 3.0e-21
 Identities = 68/233 (29%), Positives = 111/233 (47%)

Query:    49 INSSDLLLYNGSGDAKPTLPLVPGFEFSGTVIEVAXXXXXXXXXXXXXXVLQVGDKVLAL 108
             IN +D L+  G    KP LP  PG EFSG V+E                 ++ GD+V+ +
Sbjct:    63 INFADNLVCRGQYQEKPPLPFTPGMEFSGVVLEAGADVST----------VKKGDRVIGV 112

Query:   109 NKELLHGFSDQCVVHTNDVFKIPEKMTFEHAASLADSYSTAQIVFSRHAKLKEKQXXXXX 168
             +    H  ++QC+     +++IPE ++ + AA L  SY TA +     A+++  +     
Sbjct:   113 SN--FHSMAEQCITDQKTLWRIPENVSLQDAAVLPVSYGTAILAVDHRARIQPGETVLVT 170

Query:   169 XXXXXXXXXXXDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNKVLEVS 228
                        D+AT ++ AKVI    S++K  L  Q+GA + + ++ + SL + V ++ 
Sbjct:   171 AAAGATGLAVIDVATNVFCAKVIAAAGSDEKCKLAMQRGAQSGVNYS-QGSLKDAVKKLV 229

Query:   229 GGKYANVVFEAVGGEDKTDLIRQKGAWAALTFTNEKSLVNKVLEVSGGKYANV 281
             G    NV  + VGG+   D +R   AW       E  +V  VL  +GG  A+V
Sbjct:   230 GSSGVNVAIDMVGGDVFLDSLRSL-AW-------EGRIV--VLGFAGGNIASV 272

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA;ISO

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

MGI|MGI:2448516 BC026585 "cDNA sequence BC026585" [Mus musculus (taxid:10090)]

 Score = 247 (92.0 bits), Expect = 4.9e-21, P = 4.9e-21
 Identities = 66/233 (28%), Positives = 113/233 (48%)

Query:    49 INSSDLLLYNGSGDAKPTLPLVPGFEFSGTVIEVAXXXXXXXXXXXXXXVLQVGDKVLAL 108
             +N +D+L   G    KP LP  PG EFSG V+E                 ++ GD+V+ +
Sbjct:    63 VNFADILACRGQYQEKPPLPFTPGMEFSGAVLETGTDVST----------VKKGDRVIGV 112

Query:   109 NKELLHGFSDQCVVHTNDVFKIPEKMTFEHAASLADSYSTAQIVFSRHAKLKEKQXXXXX 168
             +    H  ++QC+     +++IPE ++ + AA L  SY TA +     A+++  +     
Sbjct:   113 SS--FHAMAEQCITDQKTLWRIPENVSLQDAAVLPVSYGTAILAVDHRARIQPGETVLVT 170

Query:   169 XXXXXXXXXXXDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNKVLEVS 228
                        D+AT +++AKVI    S++K  L  Q+GA  ++ ++ + SL + V +++
Sbjct:   171 AAAGATGLAVIDVATNVFRAKVIAATGSDEKCKLAVQRGAQFSVNYS-QGSLRDAVKKLA 229

Query:   229 GGKYANVVFEAVGGEDKTDLIRQKGAWAALTFTNEKSLVNKVLEVSGGKYANV 281
             G    NV  + VGG+   + +R   AW       E  +V  VL  +GG  A+V
Sbjct:   230 GSGGVNVAIDMVGGDVFLESLRSL-AW-------EGRIV--VLGFAGGNIASV 272

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

UNIPROTKB|F1PV34 LOC610994 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 243 (90.6 bits), Expect = 1.3e-20, P = 1.3e-20
 Identities = 59/207 (28%), Positives = 101/207 (48%)

Query:    49 INSSDLLLYNGSGDAKPTLPLVPGFEFSGTVIEVAXXXXXXXXXXXXXXVLQVGDKVLAL 108
             +N +D+L+  G    KP LP  PG EFSG V+E                 ++ GD+V+ +
Sbjct:    63 VNFADILVCRGQYQEKPQLPFTPGMEFSGIVLETGADVST----------VKEGDRVIGV 112

Query:   109 NKELLHGFSDQCVVHTNDVFKIPEKMTFEHAASLADSYSTAQIVFSRHAKLKEKQXXXXX 168
             +    +G +++C++    +++IPE ++   AA+L  SY TA +     A  +  +     
Sbjct:   113 SG--FNGMAEECIIDQKTLWQIPEGVSLREAATLPVSYGTALLALEHRACTQPGETVLVT 170

Query:   169 XXXXXXXXXXXDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNKVLEVS 228
                        D+AT I +AKVI    S++K  L+ QKGA + + ++ +  L   V ++ 
Sbjct:   171 AAAGATGLAVIDVATNILQAKVIAAVGSDEKCQLVMQKGAQSVVNYS-QGGLKEAVRKLV 229

Query:   229 GGKYANVVFEAVGGEDKTDLIRQKGAW 255
             G    NVV + VGG+   + +R   AW
Sbjct:   230 GSVGVNVVIDTVGGDVFLEALRSL-AW 255

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

UNIPROTKB|J9P068 LOC610994 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 243 (90.6 bits), Expect = 1.8e-20, P = 1.8e-20
 Identities = 59/207 (28%), Positives = 101/207 (48%)

Query:    49 INSSDLLLYNGSGDAKPTLPLVPGFEFSGTVIEVAXXXXXXXXXXXXXXVLQVGDKVLAL 108
             +N +D+L+  G    KP LP  PG EFSG V+E                 ++ GD+V+ +
Sbjct:    88 VNFADILVCRGQYQEKPQLPFTPGMEFSGIVLETGADVST----------VKEGDRVIGV 137

Query:   109 NKELLHGFSDQCVVHTNDVFKIPEKMTFEHAASLADSYSTAQIVFSRHAKLKEKQXXXXX 168
             +    +G +++C++    +++IPE ++   AA+L  SY TA +     A  +  +     
Sbjct:   138 SG--FNGMAEECIIDQKTLWQIPEGVSLREAATLPVSYGTALLALEHRACTQPGETVLVT 195

Query:   169 XXXXXXXXXXXDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNKVLEVS 228
                        D+AT I +AKVI    S++K  L+ QKGA + + ++ +  L   V ++ 
Sbjct:   196 AAAGATGLAVIDVATNILQAKVIAAVGSDEKCQLVMQKGAQSVVNYS-QGGLKEAVRKLV 254

Query:   229 GGKYANVVFEAVGGEDKTDLIRQKGAW 255
             G    NVV + VGG+   + +R   AW
Sbjct:   255 GSVGVNVVIDTVGGDVFLEALRSL-AW 280

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

UNIPROTKB|F1NVJ2 LOC424430 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 220 (82.5 bits), Expect = 5.2e-18, P = 5.2e-18
 Identities = 58/207 (28%), Positives = 98/207 (47%)

Query:    49 INSSDLLLYNGSGDAKPTLPLVPGFEFSGTVIEVAXXXXXXXXXXXXXXVLQVGDKVLAL 108
             +N +D+L   G    K   P  PG EFSGTV+E                 ++ G +V+ +
Sbjct:    60 LNFADILACQGLYQEKHAPPFTPGMEFSGTVMETGENVSA----------VKEGHRVIGV 109

Query:   109 NKELLHGFSDQCVVHTNDVFKIPEKMTFEHAASLADSYSTAQIVFSRHAKLKEKQXXXXX 168
                 +   +++CVV    +++IP+ ++ E AA L  +Y TA +     A L+ ++     
Sbjct:   110 TG--ISAMAEECVVDEKALWQIPDNVSSEDAAVLPVAYGTAWLALHHRAHLQPRETVLVT 167

Query:   169 XXXXXXXXXXXDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNKVLEVS 228
                        D+A  +++AKVI    S+ K  L+   GA  A+ ++ + SL  +V  ++
Sbjct:   168 AGAGATGLAIIDLAVNVFQAKVIAAAGSDPKCQLVLANGASHAVNYS-QNSLREQVTALT 226

Query:   229 GGKYANVVFEAVGGEDKTDLIRQKGAW 255
             GG+  +V  EAVGG D    + Q  AW
Sbjct:   227 GGRGVDVAIEAVGG-DIFKAVLQSLAW 252

GO:0000166 "nucleotide binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

UNIPROTKB|A6QQF5 A6QQF5 "Quinone oxidoreductase-like protein 2" [Bos taurus (taxid:9913)]

 Score = 219 (82.2 bits), Expect = 7.1e-18, P = 7.1e-18
 Identities = 60/204 (29%), Positives = 96/204 (47%)

Query:    49 INSSDLLLYNGSGDAKPTLPLVPGFEFSGTVIEVAXXXXXXXXXXXXXXVLQVGDKVLAL 108
             IN +D+L   G    +  LP  PG EFSG V+E                 ++ GD+V+ L
Sbjct:    62 INFADILACQGQYQERHQLPFTPGMEFSGMVLETGTDVST----------VKEGDRVIGL 111

Query:   109 NKELLHGFSDQCVVHTNDVFKIPEKMTFEHAASLADSYSTAQIVFSRHAKLKEKQXXXXX 168
                   G +++C+    ++++IPEK++   AA+L  SY TA       A  +  +     
Sbjct:   112 PG--FSGMAEECITDHKNLWQIPEKVSLREAAALPVSYGTAIFALEHRACTQPGETVLVT 169

Query:   169 XXXXXXXXXXXDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNE--KSLVNKVLE 226
                        D+AT I +AKVI    S++K  L  Q GA +++ ++    K  V K++ 
Sbjct:   170 AAAGATGLAVIDVATNILQAKVIAAAGSDEKCQLAMQSGAQSSVNYSRGSLKEAVGKLVG 229

Query:   227 VSGGKYANVVFEAVGGEDKTDLIR 250
              SGG   NVV + VGG+   + +R
Sbjct:   230 -SGG--VNVVIDMVGGDIFLEALR 250

GO:0005739 "mitochondrion" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

TIGR_CMR|SPO_1969 SPO_1969 "oxidoreductase, zinc-binding dehydrogenase family" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 174 (66.3 bits), Expect = 2.3e-11, P = 2.3e-11
 Identities = 58/224 (25%), Positives = 92/224 (41%)

Query:    38 GTIIEKKMMTRINSSDLLLYNGSGDAKPTLPLVPGFEFSGTVIEVAXXXXXXXXXXXXXX 97
             G ++ +     +N  D L+       KP  P  PG E +G V+ V               
Sbjct:    28 GELLVRVHAAGVNFPDTLMIRDLYQMKPPRPFAPGGEIAGEVLAVGEGVSGYTP------ 81

Query:    98 VLQVGDKVLALNKELLHGFSDQCVVHTNDVFKIPEKMTFEHAASLADSYSTAQIVFSRHA 157
                 GD+VLAL      GF+    V  N   KIP+ M ++ AA    +Y T+       A
Sbjct:    82 ----GDRVLALTG--FGGFATHLTVKANVAVKIPDAMPYDEAACFIFTYGTSHHALKDRA 135

Query:   158 KLKEKQXXXXXXXXXXXXXXXXDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNE 217
              L+  +                ++  K   A+VI   +S++K +  RQ GA   L +  E
Sbjct:   136 ALQPGETLLILGAAGGVGAAAIELG-KAAGARVIAAVSSQEKAEFCRQIGADETLVYPRE 194

Query:   218 ------KSLVNKVLEVSGGKYANVVFEAVGGEDKTDLIRQKGAW 255
                   K+L  ++ +++GG   +VV++AVGG      +R   AW
Sbjct:   195 LDRDGQKALSGEIKKLAGGDGVDVVYDAVGGAYAEPCLRAM-AW 237

GO:0008152 "metabolic process" evidence=ISS

GO:0008270 "zinc ion binding" evidence=ISS

GO:0016491 "oxidoreductase activity" evidence=ISS

TIGR_CMR|SPO_2548 SPO_2548 "oxidoreductase, zinc-binding dehydrogenase family" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 173 (66.0 bits), Expect = 3.0e-11, P = 3.0e-11
 Identities = 59/211 (27%), Positives = 91/211 (43%)

Query:    49 INSSDLLLYNGSGDAKPTLPLVPGFEFSGTVIEVAXXXXXXXXXXXXXXVLQVGDKVLAL 108
             +N  DLL+       KP  P  PG E SG ++E                 L+ GD+VLA 
Sbjct:    40 LNFPDLLIIRDLYQFKPPRPFAPGSELSG-IVE---------STGEGVTQLKAGDRVLAF 89

Query:   109 NKELLHGFSDQCVVHTNDVFKIPEKMTFEHAASLADSYSTAQIVFSRHAKLKEKQXXXXX 168
             +     G ++Q VV  + + +IP++M FE AA+   +Y T+       A L   Q     
Sbjct:    90 SG--WGGLAEQVVVPESRISRIPDQMPFEDAAAFMMTYGTSYHALKDRAGLGLGQTLLVL 147

Query:   169 XXXXXXXXXXXDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFT----NEKSLVNKV 224
                        ++  KI  A+V+   +SEDK       GA   L +     N+K L  + 
Sbjct:   148 GASGGVGLAAVELG-KILGARVLAAASSEDKLQTALDAGADDGLVYPLGEINKKELSTRF 206

Query:   225 LEVSGGKYANVVFEAVGGEDKTDLIRQKGAW 255
              E+ G   A+V+++ VGG+     +R   AW
Sbjct:   207 KELCGKSGADVIYDPVGGDYSEPALRAI-AW 236

GO:0008152 "metabolic process" evidence=ISS

GO:0008270 "zinc ion binding" evidence=ISS

GO:0016491 "oxidoreductase activity" evidence=ISS

ZFIN|ZDB-GENE-030616-178 vat1 "vesicle amine transport protein 1 homolog (T californica)" [Danio rerio (taxid:7955)]

 Score = 174 (66.3 bits), Expect = 6.0e-11, P = 6.0e-11
 Identities = 57/208 (27%), Positives = 92/208 (44%)

Query:    37 SGTIIEKKMMTRINSSDLLLYNGSGDAKPTLPLVPGFEFSGTVIEVAXXXXXXXXXXXXX 96
             SG ++ +  M  +N +DL+   G  D  P+ P+ PG E SG VIE               
Sbjct:    98 SGEVMVRVKMCGLNFADLMARQGLYDRLPSPPVTPGMECSG-VIEAVGEEVTDR------ 150

Query:    97 XVLQVGDKVLALNKELLHGFSDQCVVHTNDVFKIPEKMTFEHAASLADSYSTAQIVFSRH 156
                +VGDKVL LN+  +  + +  VV +   F +PE M+FE AA+L  +Y TA ++    
Sbjct:   151 ---KVGDKVLVLNRSGM--WQEVVVVASTHTFLMPEGMSFEEAAALPVNYITAYMMLFDF 205

Query:   157 AKLKEKQXXXXXXXXXXXXXXXXDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTN 216
               L+  Q                 +   +    V G   S  K ++I Q G    + +  
Sbjct:   206 GHLRPNQSVLVHMAAGGVGIAATQLCKTVNDVTVFGTA-SASKHEVISQGGVTHPIDYRT 264

Query:   217 EKSLVNKVLEVSGGKYANVVFEAVGGED 244
              +  V +V ++S  K  ++V + +GG D
Sbjct:   265 -RDYVEEVRKISP-KGLDIVLDPLGGSD 290

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0048037 "cofactor binding" evidence=ISS

UNIPROTKB|Q99536 VAT1 "Synaptic vesicle membrane protein VAT-1 homolog" [Homo sapiens (taxid:9606)]

 Score = 169 (64.5 bits), Expect = 1.6e-10, P = 1.6e-10
 Identities = 54/221 (24%), Positives = 94/221 (42%)

Query:    24 AKPTLPLVPGFEFSGTIIEKKMMTRINSSDLLLYNGSGDAKPTLPLVPGFEFSGTVIEVA 83
             ++P  P  PG    G +  +     +N +DL+   G  D  P LP+ PG E +G VI V 
Sbjct:    66 SRPAAPPAPG---PGQLTLRLRACGLNFADLMARQGLYDRLPPLPVTPGMEGAGVVIAVG 122

Query:    84 XXXXXXXXXXXXXXVLQVGDKVLALNKELLHGFSDQCVVHTNDVFKIPEKMTFEHAASLA 143
                             + GD+V+ LN+  +  + ++  V +   F IPE MTFE AA+L 
Sbjct:   123 EGVSDR----------KAGDRVMVLNRSGM--WQEEVTVPSVQTFLIPEAMTFEEAAALL 170

Query:   144 DSYSTAQIVFSRHAKLKEKQXXXXXXXXXXXXXXXXDMATKIYKAKVIGVCNSEDKTDLI 203
              +Y TA +V      L+                    +   +    V G   S  K + +
Sbjct:   171 VNYITAYMVLFDFGNLQPGHSVLVHMAAGGVGMAAVQLCRTVENVTVFGTA-SASKHEAL 229

Query:   204 RQKGAWAALTFTNEKSLVNKVLEVSGGKYANVVFEAVGGED 244
             ++ G    + + +    V+++ ++S  K  ++V + +GG D
Sbjct:   230 KENGVTHPIDY-HTTDYVDEIKKISP-KGVDIVMDPLGGSD 268

GO:0000166 "nucleotide binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0005741 "mitochondrial outer membrane" evidence=IEA

GO:0010637 "negative regulation of mitochondrial fusion" evidence=IMP

GO:0016021 "integral to membrane" evidence=TAS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	296
cd08241	323	cd08241, QOR1, Quinone oxidoreductase (QOR)	5e-44
COG0604	326	COG0604, Qor, NADPH:quinone reductase and related	2e-35
cd05188	271	cd05188, MDR, Medium chain reductase/dehydrogenase	5e-34
cd08268	328	cd08268, MDR2, Medium chain dehydrogenases/reducta	1e-32
cd05276	323	cd05276, p53_inducible_oxidoreductase, PIG3 p53-in	7e-32
cd08275	337	cd08275, MDR3, Medium chain dehydrogenases/reducta	2e-30
cd05286	320	cd05286, QOR2, Quinone oxidoreductase (QOR)	2e-28
cd05289	309	cd05289, MDR_like_2, alcohol dehydrogenase and qui	5e-28
cd05195	293	cd05195, enoyl_red, enoyl reductase of polyketide	7e-28
PTZ00354	334	PTZ00354, PTZ00354, alcohol dehydrogenase; Provisi	8e-26
cd05282	323	cd05282, ETR_like, 2-enoyl thioester reductase-lik	1e-25
cd08253	325	cd08253, zeta_crystallin, Zeta-crystallin with NAD	5e-25
cd08267	319	cd08267, MDR1, Medium chain dehydrogenases/reducta	3e-24
smart00829	287	smart00829, PKS_ER, Enoylreductase	4e-24
TIGR02824	325	TIGR02824, quinone_pig3, putative NAD(P)H quinone	3e-23
cd08251	303	cd08251, polyketide_synthase, polyketide synthase	3e-22
cd08266	342	cd08266, Zn_ADH_like1, Alcohol dehydrogenases of t	2e-20
cd08259	332	cd08259, Zn_ADH5, Alcohol dehydrogenases of the MD	3e-20
cd08250	329	cd08250, Mgc45594_like, Mgc45594 gene product and	1e-19
cd08273	331	cd08273, MDR8, Medium chain dehydrogenases/reducta	2e-19
cd08244	324	cd08244, MDR_enoyl_red, Possible enoyl reductase	2e-18
COG1064	339	COG1064, AdhP, Zn-dependent alcohol dehydrogenases	6e-18
PRK13771	334	PRK13771, PRK13771, putative alcohol dehydrogenase	6e-18
COG1063	350	COG1063, Tdh, Threonine dehydrogenase and related	8e-18
PRK10754	327	PRK10754, PRK10754, quinone oxidoreductase, NADPH-	6e-17
cd08236	343	cd08236, sugar_DH, NAD(P)-dependent sugar dehydrog	3e-16
cd08254	338	cd08254, hydroxyacyl_CoA_DH, 6-hydroxycyclohex-1-e	5e-16
cd08271	325	cd08271, MDR5, Medium chain dehydrogenases/reducta	1e-15
cd08272	326	cd08272, MDR6, Medium chain dehydrogenases/reducta	3e-15
cd08260	345	cd08260, Zn_ADH6, Alcohol dehydrogenases of the MD	4e-15
cd08274	350	cd08274, MDR9, Medium chain dehydrogenases/reducta	5e-15
cd08261	337	cd08261, Zn_ADH7, Alcohol dehydrogenases of the MD	6e-15
cd08248	350	cd08248, RTN4I1, Human Reticulon 4 Interacting Pro	5e-14
cd08233	351	cd08233, butanediol_DH_like, (2R,3R)-2,3-butanedio	2e-13
cd08249	339	cd08249, enoyl_reductase_like, enoyl_reductase_lik	3e-13
cd05278	347	cd05278, FDH_like, Formaldehyde dehydrogenases	4e-13
cd08258	306	cd08258, Zn_ADH4, Alcohol dehydrogenases of the MD	9e-13
cd08297	341	cd08297, CAD3, Cinnamyl alcohol dehydrogenases (CA	1e-12
cd05284	340	cd05284, arabinose_DH_like, D-arabinose dehydrogen	4e-12
cd08291	324	cd08291, ETR_like_1, 2-enoyl thioester reductase (	1e-11
cd08243	320	cd08243, quinone_oxidoreductase_like_1, Quinone ox	1e-11
cd08234	334	cd08234, threonine_DH_like, L-threonine dehydrogen	2e-11
cd05280	325	cd05280, MDR_yhdh_yhfp, Yhdh and yhfp-like putativ	4e-11
cd08231	361	cd08231, MDR_TM0436_like, Hypothetical enzyme TM04	5e-11
cd08263	367	cd08263, Zn_ADH10, Alcohol dehydrogenases of the M	2e-10
cd08290	341	cd08290, ETR, 2-enoyl thioester reductase (ETR)	2e-10
cd08247	352	cd08247, AST1_like, AST1 is a cytoplasmic protein	3e-10
cd08269	312	cd08269, Zn_ADH9, Alcohol dehydrogenases of the MD	4e-10
TIGR01751	398	TIGR01751, crot-CoA-red, crotonyl-CoA reductase	4e-10
TIGR02823	323	TIGR02823, oxido_YhdH, putative quinone oxidoreduc	5e-10
cd08279	363	cd08279, Zn_ADH_class_III, Class III alcohol dehyd	6e-10
cd05288	329	cd05288, PGDH, Prostaglandin dehydrogenases	1e-09
cd08239	339	cd08239, THR_DH_like, L-threonine dehydrogenase (T	3e-09
cd05285	343	cd05285, sorbitol_DH, Sorbitol dehydrogenase	4e-09
cd08256	350	cd08256, Zn_ADH2, Alcohol dehydrogenases of the MD	6e-09
cd08255	277	cd08255, 2-desacetyl-2-hydroxyethyl_bacteriochloro	6e-09
cd08284	344	cd08284, FDH_like_2, Glutathione-dependent formald	7e-09
cd08270	305	cd08270, MDR4, Medium chain dehydrogenases/reducta	9e-09
COG1062	366	COG1062, AdhC, Zn-dependent alcohol dehydrogenases	1e-08
cd08292	324	cd08292, ETR_like_2, 2-enoyl thioester reductase (	1e-08
cd08235	343	cd08235, iditol_2_DH_like, L-iditol 2-dehydrogenas	2e-08
pfam00107	131	pfam00107, ADH_zinc_N, Zinc-binding dehydrogenase	2e-08
cd08264	325	cd08264, Zn_ADH_like2, Alcohol dehydrogenases of t	3e-08
cd08283	386	cd08283, FDH_like_1, Glutathione-dependent formald	3e-08
cd08276	336	cd08276, MDR7, Medium chain dehydrogenases/reducta	4e-08
COG2130	340	COG2130, COG2130, Putative NADP-dependent oxidored	2e-07
cd08288	324	cd08288, MDR_yhdh, Yhdh putative quinone oxidoredu	2e-07
cd08289	326	cd08289, MDR_yhfp_like, Yhfp putative quinone oxid	2e-07
cd08246	393	cd08246, crotonyl_coA_red, crotonyl-CoA reductase	4e-07
cd08281	371	cd08281, liver_ADH_like1, Zinc-dependent alcohol d	4e-07
cd05283	337	cd05283, CAD1, Cinnamyl alcohol dehydrogenases (CA	8e-07
cd08240	350	cd08240, 6_hydroxyhexanoate_dh_like, 6-hydroxyhexa	3e-06
pfam08240	108	pfam08240, ADH_N, Alcohol dehydrogenase GroES-like	3e-06
cd08285	351	cd08285, NADP_ADH, NADP(H)-dependent alcohol dehyd	4e-06
pfam08240	108	pfam08240, ADH_N, Alcohol dehydrogenase GroES-like	6e-06
cd08286	345	cd08286, FDH_like_ADH2, formaldehyde dehydrogenase	6e-06
TIGR02825	325	TIGR02825, B4_12hDH, leukotriene B4 12-hydroxydehy	1e-05
TIGR00692	340	TIGR00692, tdh, L-threonine 3-dehydrogenase	2e-05
cd08262	341	cd08262, Zn_ADH8, Alcohol dehydrogenases of the MD	4e-05
cd08265	384	cd08265, Zn_ADH3, Alcohol dehydrogenases of the MD	6e-05
cd05279	365	cd05279, Zn_ADH1, Liver alcohol dehydrogenase and	8e-05
PRK09422	338	PRK09422, PRK09422, ethanol-active dehydrogenase/a	9e-05
PLN02514	357	PLN02514, PLN02514, cinnamyl-alcohol dehydrogenase	2e-04
cd08252	336	cd08252, AL_MDR, Arginate lyase and other MDR fami	2e-04
cd08277	365	cd08277, liver_alcohol_DH_like, Liver alcohol dehy	4e-04
cd08245	330	cd08245, CAD, Cinnamyl alcohol dehydrogenases (CAD	6e-04
cd08232	339	cd08232, idonate-5-DH, L-idonate 5-dehydrogenase	0.001
cd08258	306	cd08258, Zn_ADH4, Alcohol dehydrogenases of the MD	0.003

>gnl|CDD|176203 cd08241, QOR1, Quinone oxidoreductase (QOR)

 Score =  151 bits (385), Expect = 5e-44
 Identities = 73/195 (37%), Positives = 109/195 (55%), Gaps = 14/195 (7%)

Query: 49  INSSDLLLYNGSGDAKPTLPLVPGFEFSGTVIEVADTKSSSTEEDDEEDVLQVGDKVLAL 108
           +N  DLL+  G    KP LP VPG E +G V  V +  +            +VGD+V+AL
Sbjct: 39  VNFPDLLMIQGKYQVKPPLPFVPGSEVAGVVEAVGEGVTG----------FKVGDRVVAL 88

Query: 109 NKELLHGFSDQCVVHTNDVFKIPEKMTFEHAASLADSYSTAQIVFSRHAKLKEKQTVLVT 168
                 GF+++ VV    VF +P+ ++FE AA+L  +Y TA     R A+L+  +TVLV 
Sbjct: 89  T--GQGGFAEEVVVPAAAVFPLPDGLSFEEAAALPVTYGTAYHALVRRARLQPGETVLVL 146

Query: 169 AAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNKVLEVS 228
            A GG+GLAAV +A K   A+VI   +SE+K  L R  GA   + +  +  L  +V  ++
Sbjct: 147 GAAGGVGLAAVQLA-KALGARVIAAASSEEKLALARALGADHVIDYR-DPDLRERVKALT 204

Query: 229 GGKYANVVFEAVGGE 243
           GG+  +VV++ VGG+
Sbjct: 205 GGRGVDVVYDPVGGD 219

QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 323

>gnl|CDD|223677 COG0604, Qor, NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]

 Score =  129 bits (326), Expect = 2e-35
 Identities = 64/196 (32%), Positives = 103/196 (52%), Gaps = 13/196 (6%)

Query: 49  INSSDLLLYNGSGDAKPTLPLVPGFEFSGTVIEVADTKSSSTEEDDEEDVLQVGDKVLAL 108
           +N  D+L+  G       LP +PG E +G V+ V                 +VGD+V AL
Sbjct: 39  VNPIDVLVRQGLAPPVRPLPFIPGSEAAGVVVAVGS----------GVTGFKVGDRVAAL 88

Query: 109 NKELLHG-FSDQCVVHTNDVFKIPEKMTFEHAASLADSYSTAQIVFSRHAKLKEKQTVLV 167
                 G +++  VV  + +  +P+ ++FE AA+L  +  TA +     A LK  +TVLV
Sbjct: 89  GGVGRDGGYAEYVVVPADWLVPLPDGLSFEEAAALPLAGLTAWLALFDRAGLKPGETVLV 148

Query: 168 TAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNKVLEV 227
             A GG+G AA+ +A K   A V+ V +S +K +L+++ GA   + +  E   V +V E+
Sbjct: 149 HGAAGGVGSAAIQLA-KALGATVVAVVSSSEKLELLKELGADHVINYREE-DFVEQVREL 206

Query: 228 SGGKYANVVFEAVGGE 243
           +GGK  +VV + VGG+
Sbjct: 207 TGGKGVDVVLDTVGGD 222

Length = 326

>gnl|CDD|176178 cd05188, MDR, Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score =  124 bits (313), Expect = 5e-34
 Identities = 64/217 (29%), Positives = 103/217 (47%), Gaps = 35/217 (16%)

Query: 49  INSSDLLLYNGSGDAKPTLPLVPGFEFSGTVIEVADTKSSSTEEDDEEDVLQVGDKVLA- 107
           +  +DL +  G     P LPL+ G E +G V+EV                ++VGD+V+  
Sbjct: 11  LCGTDLHIRRGGYPPPPKLPLILGHEGAGVVVEVGP----------GVTGVKVGDRVVVL 60

Query: 108 --------------------LNKELLHGFSDQCVVHTNDVFKIPEKMTFEHAASLADSYS 147
                               L + L  GF++  VV  +++  +P+ ++ E AA L +  +
Sbjct: 61  PNLGCGTCELCRELCPGGGILGEGLDGGFAEYVVVPADNLVPLPDGLSLEEAALLPEPLA 120

Query: 148 TAQIVFSRHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKG 207
           TA     R   LK   TVLV  A GG+GL A  +A K   A+VI    S++K +L ++ G
Sbjct: 121 TAYHALRRAGVLKPGDTVLVLGA-GGVGLLAAQLA-KAAGARVIVTDRSDEKLELAKELG 178

Query: 208 AWAALTFTNEKSLVNKVLEVSGGKYANVVFEAVGGED 244
           A   + +  E   + + L ++GG  A+VV +AVGG +
Sbjct: 179 ADHVIDYKEE--DLEEELRLTGGGGADVVIDAVGGPE 213

The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Other MDR members have only a catalytic zinc, and some contain no coordinated zinc. Length = 271

>gnl|CDD|176229 cd08268, MDR2, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score =  122 bits (308), Expect = 1e-32
 Identities = 63/205 (30%), Positives = 97/205 (47%), Gaps = 15/205 (7%)

Query: 49  INSSDLLLYNGSGDAKPTLPLVPGFEFSGTVIEVADTKSSSTEEDDEEDVLQVGDKVLAL 108
           +N +D +   G+    P LP   G+E +G V  V                  VGD+V  +
Sbjct: 39  LNRADAMFRRGAYIEPPPLPARLGYEAAGVVEAVGA----------GVTGFAVGDRVSVI 88

Query: 109 NKELLH---GFSDQCVVHTNDVFKIPEKMTFEHAASLADSYSTAQIVFSRHAKLKEKQTV 165
               L     +++  +V    V K+P+ ++F  AA+L   Y TA       A L+   +V
Sbjct: 89  PAADLGQYGTYAEYALVPAAAVVKLPDGLSFVEAAALWMQYLTAYGALVELAGLRPGDSV 148

Query: 166 LVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNKVL 225
           L+TAA   +GLAA+ +A     A VI    + +K D +   GA A +  T+E+ LV +VL
Sbjct: 149 LITAASSSVGLAAIQIA-NAAGATVIATTRTSEKRDALLALGA-AHVIVTDEEDLVAEVL 206

Query: 226 EVSGGKYANVVFEAVGGEDKTDLIR 250
            ++GGK  +VVF+ VGG     L  
Sbjct: 207 RITGGKGVDVVFDPVGGPQFAKLAD 231

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 328

>gnl|CDD|176180 cd05276, p53_inducible_oxidoreductase, PIG3 p53-inducible quinone oxidoreductase

 Score =  120 bits (303), Expect = 7e-32
 Identities = 60/198 (30%), Positives = 96/198 (48%), Gaps = 20/198 (10%)

Query: 49  INSSDLLLYNGSGDAKPTLPLVPGFEFSGTVIEVADTKSSSTEEDDEEDVLQVGDKVLAL 108
           +N +DLL   G     P    + G E +G V+ V                 +VGD+V AL
Sbjct: 39  VNRADLLQRQGLYPPPPGASDILGLEVAGVVVAVGP----------GVTGWKVGDRVCAL 88

Query: 109 NKELLHG--FSDQCVVHTNDVFKIPEKMTFEHAASLADSYSTA-QIVFSRHAKLKEKQTV 165
               L G  +++  VV    +  +PE ++   AA+L + + TA Q +F +   LK  +TV
Sbjct: 89  ----LAGGGYAEYVVVPAGQLLPVPEGLSLVEAAALPEVFFTAWQNLF-QLGGLKAGETV 143

Query: 166 LVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNKVL 225
           L+     G+G AA+ +A K   A+VI    SE+K +  R  GA  A+ +  E     +V 
Sbjct: 144 LIHGGASGVGTAAIQLA-KALGARVIATAGSEEKLEACRALGADVAINYRTE-DFAEEVK 201

Query: 226 EVSGGKYANVVFEAVGGE 243
           E +GG+  +V+ + VGG+
Sbjct: 202 EATGGRGVDVILDMVGGD 219

PIG3 p53-inducible quinone oxidoreductase, a medium chain dehydrogenase/reductase family member, acts in the apoptotic pathway. PIG3 reduces ortho-quinones, but its apoptotic activity has been attributed to oxidative stress generation, since overexpression of PIG3 accumulates reactive oxygen species. PIG3 resembles the MDR family member quinone reductases, which catalyze the reduction of quinone to hydroxyquinone. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 323

>gnl|CDD|176236 cd08275, MDR3, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score =  116 bits (292), Expect = 2e-30
 Identities = 60/196 (30%), Positives = 100/196 (51%), Gaps = 15/196 (7%)

Query: 49  INSSDLLLYNGSGDAKPTLPLVPGFEFSGTVIEVADTKSSSTEEDDEEDVLQVGDKVLAL 108
           +N +DL+   G  D+ P  P VPGFE +GTV  V +               +VGD+V+ L
Sbjct: 38  LNFADLMARQGLYDSAPKPPFVPGFECAGTVEAVGEGVKD----------FKVGDRVMGL 87

Query: 109 NKELLHGFSDQCVVHTNDVFKIPEKMTFEHAASLADSYSTAQIVFSRHAKLKEKQTVLVT 168
            +    G+++   V  + VF +P+ M+FE AA+   +Y TA         L+  Q+VLV 
Sbjct: 88  TR--FGGYAEVVNVPADQVFPLPDGMSFEEAAAFPVNYLTAYYALFELGNLRPGQSVLVH 145

Query: 169 AAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNKVLEVS 228
           +A GG+GLAA  +   +    V+G   S  K + +++ G    + +  +   V +V ++S
Sbjct: 146 SAAGGVGLAAGQLCKTVPNVTVVGTA-SASKHEALKENGVTHVIDYRTQ-DYVEEVKKIS 203

Query: 229 GGKYANVVFEAVGGED 244
                ++V +A+GGED
Sbjct: 204 PEGV-DIVLDALGGED 218

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 337

>gnl|CDD|176189 cd05286, QOR2, Quinone oxidoreductase (QOR)

 Score =  110 bits (278), Expect = 2e-28
 Identities = 59/185 (31%), Positives = 88/185 (47%), Gaps = 18/185 (9%)

Query: 60  SGDAKPTLPLVPGFEFSGTVIEVADTKSSSTEEDDEEDV--LQVGDKVLALNKELLHGFS 117
           SG     LP V G E +G V  V               V   +VGD+V          ++
Sbjct: 47  SGLYPLPLPFVLGVEGAGVVEAVG------------PGVTGFKVGDRVAYAGP--PGAYA 92

Query: 118 DQCVVHTNDVFKIPEKMTFEHAASLADSYSTAQIVFSRHAKLKEKQTVLVTAAGGGLGLA 177
           +  VV  + + K+P+ ++ E AA+L     TA  +      +K   TVLV AA GG+GL 
Sbjct: 93  EYRVVPASRLVKLPDGISDETAAALLLQGLTAHYLLRETYPVKPGDTVLVHAAAGGVGLL 152

Query: 178 AVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNKVLEVSGGKYANVVF 237
               A K   A VIG  +SE+K +L R  GA   + + +E   V +V E++GG+  +VV+
Sbjct: 153 LTQWA-KALGATVIGTVSSEEKAELARAAGADHVINYRDED-FVERVREITGGRGVDVVY 210

Query: 238 EAVGG 242
           + VG 
Sbjct: 211 DGVGK 215

Quinone oxidoreductase (QOR) and 2-haloacrylate reductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. 2-haloacrylate reductase, a member of this subgroup, catalyzes the NADPH-dependent reduction of a carbon-carbon double bond in organohalogen compounds. Although similar to QOR, Burkholderia 2-haloacrylate reductase does not act on the quinones 1,4-benzoquinone and 1,4-naphthoquinone. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 320

>gnl|CDD|176191 cd05289, MDR_like_2, alcohol dehydrogenase and quinone reductase-like medium chain degydrogenases/reductases

 Score =  109 bits (275), Expect = 5e-28
 Identities = 60/199 (30%), Positives = 90/199 (45%), Gaps = 22/199 (11%)

Query: 49  INSSDLLLYNGSGDAKP--TLPLVPGFEFSGTVIEVADTKSSSTEEDDEEDVLQVGDKVL 106
           +N  DL +  G   A    TLPL+PG + +G V+ V                 +VGD+V 
Sbjct: 39  VNPVDLKIREGLLKAAFPLTLPLIPGHDVAGVVVAVGP----------GVTGFKVGDEVF 88

Query: 107 AL-NKELLHGFSDQCVVHTNDVFKIPEKMTFEHAASLADSYSTA-QIVFSRHAKLKEKQT 164
            +        +++  VV  +++   P  ++FE AA+L  +  TA Q +F     LK  QT
Sbjct: 89  GMTPFTRGGAYAEYVVVPADELALKPANLSFEEAAALPLAGLTAWQALF-ELGGLKAGQT 147

Query: 165 VLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNKV 224
           VL+  A GG+G  AV +A K   A+VI    S    D +R  GA   + +T  K    + 
Sbjct: 148 VLIHGAAGGVGSFAVQLA-KARGARVIATA-SAANADFLRSLGADEVIDYT--KGDFERA 203

Query: 225 LEVSGGKYANVVFEAVGGE 243
               G    + V + VGGE
Sbjct: 204 AAPGG---VDAVLDTVGGE 219

Members identified as zinc-dependent alcohol dehydrogenases and quinone oxidoreductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 309

>gnl|CDD|176179 cd05195, enoyl_red, enoyl reductase of polyketide synthase

 Score =  108 bits (273), Expect = 7e-28
 Identities = 59/196 (30%), Positives = 96/196 (48%), Gaps = 18/196 (9%)

Query: 49  INSSDLLLYNGSGDAKPTLPLVPGFEFSGTVIEVADTKSSSTEEDDEEDVLQVGDKVLAL 108
           +N  D+L+  G      T     G E SG V  V    +           L+VGD+V+ L
Sbjct: 12  LNFRDVLVALGLLPGDET---PLGLECSGIVTRVGSGVTG----------LKVGDRVMGL 58

Query: 109 NKELLHGFSDQCVVHTNDVFKIPEKMTFEHAASLADSYSTAQIVFSRHAKLKEKQTVLVT 168
                  F+    V    V KIP+ ++FE AA+L  +Y TA       A+L++ ++VL+ 
Sbjct: 59  AP---GAFATHVRVDARLVVKIPDSLSFEEAATLPVAYLTAYYALVDLARLQKGESVLIH 115

Query: 169 AAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFT-NEKSLVNKVLEV 227
           AA GG+G AA+ +A +   A+V     SE+K + +R+ G      F+  + S  + +L  
Sbjct: 116 AAAGGVGQAAIQLA-QHLGAEVFATVGSEEKREFLRELGGPVDHIFSSRDLSFADGILRA 174

Query: 228 SGGKYANVVFEAVGGE 243
           +GG+  +VV  ++ GE
Sbjct: 175 TGGRGVDVVLNSLSGE 190

Putative enoyl reductase of polyketide synthase. Polyketide synthases produce polyketides in step by step mechanism that is similar to fatty acid synthesis. Enoyl reductase reduces a double to single bond. Erythromycin is one example of a polyketide generated by 3 complex enzymes (megasynthases). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains, at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Length = 293

>gnl|CDD|173547 PTZ00354, PTZ00354, alcohol dehydrogenase; Provisional

 Score =  103 bits (260), Expect = 8e-26
 Identities = 63/226 (27%), Positives = 106/226 (46%), Gaps = 20/226 (8%)

Query: 40  IIEKKMMTRINSSDLLLYNGSGDAKPTLPLVPGFEFSGTVIEVADTKSSSTEEDDEEDVL 99
           ++ K     +N +D L   G     P    + G E +G V +V        E        
Sbjct: 31  VLIKVSAAGVNRADTLQRQGKYPPPPGSSEILGLEVAGYVEDVGSDVKRFKE-------- 82

Query: 100 QVGDKVLALNKELLHG--FSDQCVVHTNDVFKIPEKMTFEHAASLADSYSTAQIVFSRHA 157
             GD+V+AL    L G  +++  V H   V  IP+  TFE AA++ +++ TA  +  +H 
Sbjct: 83  --GDRVMAL----LPGGGYAEYAVAHKGHVMHIPQGYTFEEAAAIPEAFLTAWQLLKKHG 136

Query: 158 KLKEKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNE 217
            +K+ Q+VL+ A   G+G AA  +A K   A +I    SE+K D  ++  A   + + +E
Sbjct: 137 DVKKGQSVLIHAGASGVGTAAAQLAEKYGAATIITTS-SEEKVDFCKKLAAIILIRYPDE 195

Query: 218 KSLVNKVLEVSGGKYANVVFEAVGG---EDKTDLIRQKGAWAALTF 260
           +    KV +++G K  N+V + VGG    +  +++   G W    F
Sbjct: 196 EGFAPKVKKLTGEKGVNLVLDCVGGSYLSETAEVLAVDGKWIVYGF 241

Length = 334

>gnl|CDD|176645 cd05282, ETR_like, 2-enoyl thioester reductase-like

 Score =  103 bits (259), Expect = 1e-25
 Identities = 61/205 (29%), Positives = 99/205 (48%), Gaps = 20/205 (9%)

Query: 49  INSSDLLLYNGSGDAKPTLPLVPGFEFSGTVIEVADTKSSSTEEDDEEDVLQVGDKVLAL 108
           IN SDL+  +G+  ++P LP VPG E  G V+EV    S           L VG +VL  
Sbjct: 38  INPSDLITISGAYGSRPPLPAVPGNEGVGVVVEVGSGVSG----------LLVGQRVL-- 85

Query: 109 NKELLHGF---SDQCVVHTNDVFKIPEKMTFEHAASLADSYSTAQIVFSRHAKLKEKQTV 165
               L G     +  V   +D+  +P+ ++ E AA L  +  TA ++ + + KL     V
Sbjct: 86  ---PLGGEGTWQEYVVAPADDLIPVPDSISDEQAAMLYINPLTAWLMLTEYLKLPPGDWV 142

Query: 166 LVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNKVL 225
           +  AA   +G   + +A K+   K I V   +++ + ++  GA   +  ++ + L  +V 
Sbjct: 143 IQNAANSAVGRMLIQLA-KLLGFKTINVVRRDEQVEELKALGADEVID-SSPEDLAQRVK 200

Query: 226 EVSGGKYANVVFEAVGGEDKTDLIR 250
           E +GG  A +  +AVGGE  T L R
Sbjct: 201 EATGGAGARLALDAVGGESATRLAR 225

2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Candida tropicalis enoyl thioester reductase (Etr1p) catalyzes the NADPH-dependent reduction of trans-2-enoyl thioesters in mitochondrial fatty acid synthesis. Etr1p forms homodimers with each subunit containing a nucleotide-binding Rossmann fold domain and a catalytic domain. Length = 323

>gnl|CDD|176215 cd08253, zeta_crystallin, Zeta-crystallin with NADP-dependent quinone reductase activity (QOR)

 Score =  101 bits (254), Expect = 5e-25
 Identities = 59/217 (27%), Positives = 97/217 (44%), Gaps = 22/217 (10%)

Query: 49  INSSDLLLYNGSGDAKPTLPLVPGFEFSGTVIEVADTKSSSTEEDDEEDV--LQVGDKVL 106
           +N  D  +  G+    P LP VPG + +G V  V             E V  L+VGD+V 
Sbjct: 39  VNPVDTYIRAGAYPGLPPLPYVPGSDGAGVVEAVG------------EGVDGLKVGDRVW 86

Query: 107 A--LNKELLHG-FSDQCVVHTNDVFKIPEKMTFEHAASLADSYSTAQIVFSRHAKLKEKQ 163
              L      G  ++  VV  + +  +P+ ++FE  A+L     TA       A  K  +
Sbjct: 87  LTNLGWGRRQGTAAEYVVVPADQLVPLPDGVSFEQGAALGIPALTAYRALFHRAGAKAGE 146

Query: 164 TVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNK 223
           TVLV    G +G AAV +A +   A+VI   +S +  +L+RQ GA A   +   + L ++
Sbjct: 147 TVLVHGGSGAVGHAAVQLA-RWAGARVIATASSAEGAELVRQAGADAVFNY-RAEDLADR 204

Query: 224 VLEVSGGKYANVVFEAVGGED---KTDLIRQKGAWAA 257
           +L  + G+  +V+ E +   +     D++   G    
Sbjct: 205 ILAATAGQGVDVIIEVLANVNLAKDLDVLAPGGRIVV 241

Zeta-crystallin is a eye lens protein with NADP-dependent quinone reductase activity (QOR). It has been cited as a structural component in mammalian eyes, but also has homology to quinone reductases in unrelated species. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 325

>gnl|CDD|176228 cd08267, MDR1, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score = 99.6 bits (249), Expect = 3e-24
 Identities = 63/201 (31%), Positives = 91/201 (45%), Gaps = 23/201 (11%)

Query: 49  INSSDLLLYNGSGDAKPTL----PLVPGFEFSGTVIEVADTKSSSTEEDDEEDVLQVGDK 104
           +N  D  L  G    K  L    P +PG +F+G V+ V    +            +VGD+
Sbjct: 38  VNPVDWKLRRG--PPKLLLGRPFPPIPGMDFAGEVVAVGSGVTR----------FKVGDE 85

Query: 105 VLALNKELLHG-FSDQCVVHTNDVFKIPEKMTFEHAASLADSYSTAQIVFSRHAKLKEKQ 163
           V         G  ++  V   + + K PE ++FE AA+L  +  TA        K+K  Q
Sbjct: 86  VFGRLPPKGGGALAEYVVAPESGLAKKPEGVSFEEAAALPVAGLTALQALRDAGKVKPGQ 145

Query: 164 TVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNK 223
            VL+  A GG+G  AV +A K   A V GVC S    +L+R  GA   + +T E  +   
Sbjct: 146 RVLINGASGGVGTFAVQIA-KALGAHVTGVC-STRNAELVRSLGADEVIDYTTEDFV--- 200

Query: 224 VLEVSGGKYANVVFEAVGGED 244
            L   G KY +V+F+AVG   
Sbjct: 201 ALTAGGEKY-DVIFDAVGNSP 220

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 319

>gnl|CDD|214840 smart00829, PKS_ER, Enoylreductase

 Score = 98.6 bits (247), Expect = 4e-24
 Identities = 56/198 (28%), Positives = 92/198 (46%), Gaps = 23/198 (11%)

Query: 49  INSSDLLLYNGSGDAKPTLPLVPGFEFSGTVIEVADTKSSSTEEDDEEDV--LQVGDKVL 106
           +N  D+L+  G    +  L    G E +G V  V               V  L VGD+V+
Sbjct: 8   LNFRDVLIALGLYPGEAVL----GGECAGVVTRVG------------PGVTGLAVGDRVM 51

Query: 107 ALNKELLHGFSDQCVVHTNDVFKIPEKMTFEHAASLADSYSTAQIVFSRHAKLKEKQTVL 166
            L       F+ + V     V  IP+  +FE AA++   + TA       A+L+  ++VL
Sbjct: 52  GL---APGAFATRVVTDARLVVPIPDGWSFEEAATVPVVFLTAYYALVDLARLRPGESVL 108

Query: 167 VTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTF-TNEKSLVNKVL 225
           + AA GG+G AA+ +A +   A+V     S +K D +R  G      F + + S  +++L
Sbjct: 109 IHAAAGGVGQAAIQLA-RHLGAEVFATAGSPEKRDFLRALGIPDDHIFSSRDLSFADEIL 167

Query: 226 EVSGGKYANVVFEAVGGE 243
             +GG+  +VV  ++ GE
Sbjct: 168 RATGGRGVDVVLNSLSGE 185

Enoylreductase in Polyketide synthases. Length = 287

>gnl|CDD|234027 TIGR02824, quinone_pig3, putative NAD(P)H quinone oxidoreductase, PIG3 family

 Score = 96.6 bits (241), Expect = 3e-23
 Identities = 57/200 (28%), Positives = 91/200 (45%), Gaps = 24/200 (12%)

Query: 49  INSSDLLLYNGSGDAKPTLPLVPGFEFSGTVIEVADTKSSSTEEDDEEDV--LQVGDKVL 106
           +N  DLL   G     P    + G E +G V+ V             E V   +VGD+V 
Sbjct: 39  VNRPDLLQRAGKYPPPPGASDILGLEVAGEVVAVG------------EGVSRWKVGDRVC 86

Query: 107 ALNKELLHG--FSDQCVVHTNDVFKIPEKMTFEHAASLADSYSTA-QIVFSRHAKLKEKQ 163
           AL    + G  +++   V    V  +PE ++   AA+L +++ T    +F R   LK  +
Sbjct: 87  AL----VAGGGYAEYVAVPAGQVLPVPEGLSLVEAAALPETFFTVWSNLFQR-GGLKAGE 141

Query: 164 TVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNK 223
           TVL+     G+G  A+ +A K + A+V     S++K       GA  A+ +  E+  V  
Sbjct: 142 TVLIHGGASGIGTTAIQLA-KAFGARVFTTAGSDEKCAACEALGADIAINYR-EEDFVEV 199

Query: 224 VLEVSGGKYANVVFEAVGGE 243
           V   +GGK  +V+ + VGG 
Sbjct: 200 VKAETGGKGVDVILDIVGGS 219

Members of this family are putative quinone oxidoreductases that belong to the broader superfamily (modeled by Pfam pfam00107) of zinc-dependent alcohol (of medium chain length) dehydrogenases and quinone oxiooreductases. The alignment shows no motif of conserved Cys residues as are found in zinc-binding members of the superfamily, and members are likely to be quinone oxidoreductases instead. A member of this family in Homo sapiens, PIG3, is induced by p53 but is otherwise uncharacterized [Unknown function, Enzymes of unknown specificity]. Length = 325

>gnl|CDD|176213 cd08251, polyketide_synthase, polyketide synthase

 Score = 94.0 bits (234), Expect = 3e-22
 Identities = 57/195 (29%), Positives = 95/195 (48%), Gaps = 13/195 (6%)

Query: 49  INSSDLLLYNGSGDAKPTLPLVPGFEFSGTVIEVADTKSSSTEEDDEEDVLQVGDKVLAL 108
           +N  DLL   G     P  P  PGFE SG V  V    +           L VGD+V+A 
Sbjct: 19  LNFGDLLCVRGLYPTMPPYPFTPGFEASGVVRAVGPHVTR----------LAVGDEVIAG 68

Query: 109 NKELLHGFSDQCVVHTNDVFKIPEKMTFEHAASLADSYSTAQIVFSRHAKLKEKQTVLVT 168
             E + G +    V  + V + P  ++FE A +L   + T    F+R A L + + +L+ 
Sbjct: 69  TGESMGGHATLVTVPEDQVVRKPASLSFEEACALPVVFLTVIDAFAR-AGLAKGEHILIQ 127

Query: 169 AAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNKVLEVS 228
            A GG GL AV +A ++  A++    +S+DK + ++Q G    + +  E+    +++ ++
Sbjct: 128 TATGGTGLMAVQLA-RLKGAEIYATASSDDKLEYLKQLGVPHVINYV-EEDFEEEIMRLT 185

Query: 229 GGKYANVVFEAVGGE 243
           GG+  +VV   + GE
Sbjct: 186 GGRGVDVVINTLSGE 200

Polyketide synthases produce polyketides in step by step mechanism that is similar to fatty acid synthesis. Enoyl reductase reduces a double to single bond. Erythromycin is one example of a polyketide generated by 3 complex enzymes (megasynthases). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Length = 303

>gnl|CDD|176227 cd08266, Zn_ADH_like1, Alcohol dehydrogenases of the MDR family

 Score = 89.2 bits (222), Expect = 2e-20
 Identities = 58/213 (27%), Positives = 98/213 (46%), Gaps = 23/213 (10%)

Query: 49  INSSDLLLYNGSGDAKPTLPLVPGFEFSGTVIEVADTKSSSTEEDDEEDVLQVGD----- 103
           +N  DL +  G    K  LP + G + +G V  V      +  +  +  V+  G      
Sbjct: 39  LNHLDLWVRRGMPGIKLPLPHILGSDGAGVVEAVGP--GVTNVKPGQRVVIYPGISCGRC 96

Query: 104 -----------KVLALNKELLHGFSDQCVVHTND-VFKIPEKMTFEHAASLADSYSTA-Q 150
                          +  E + G   + V      +  IP+ ++FE AA+   ++ TA  
Sbjct: 97  EYCLAGRENLCAQYGILGEHVDGGYAEYVAVPARNLLPIPDNLSFEEAAAAPLTFLTAWH 156

Query: 151 IVFSRHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWA 210
           ++ +R A+L+  +TVLV  AG G+G AA+ +A K++ A VI    SEDK +  ++ GA  
Sbjct: 157 MLVTR-ARLRPGETVLVHGAGSGVGSAAIQIA-KLFGATVIATAGSEDKLERAKELGADY 214

Query: 211 ALTFTNEKSLVNKVLEVSGGKYANVVFEAVGGE 243
            + +  E   V +V E++G +  +VV E VG  
Sbjct: 215 VIDYRKED-FVREVRELTGKRGVDVVVEHVGAA 246

This group contains proteins related to the zinc-dependent alcohol dehydrogenases. However, while the group has structural zinc site characteristic of these enzymes, it lacks the consensus site for a catalytic zinc. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 342

>gnl|CDD|176220 cd08259, Zn_ADH5, Alcohol dehydrogenases of the MDR family

 Score = 88.5 bits (220), Expect = 3e-20
 Identities = 55/193 (28%), Positives = 87/193 (45%), Gaps = 23/193 (11%)

Query: 66  TLPLVPGFEFSGTVIEVADTKSSSTEEDD----------EEDVLQVGDKVLALNKELLH- 114
             PL+ G E  GTV EV +        D           + +    G++ L  N+     
Sbjct: 53  KYPLILGHEIVGTVEEVGEGVERFKPGDRVILYYYIPCGKCEYCLSGEENLCRNRAEYGE 112

Query: 115 ----GFSDQCVVHTNDVFKIPEKMTFEHAASLADSYSTAQIVFSRHAKLKEKQTVLVTAA 170
               GF++   V    + K+P+ ++ E AA  A    TA +   + A +K+  TVLVT A
Sbjct: 113 EVDGGFAEYVKVPERSLVKLPDNVSDESAALAACVVGTA-VHALKRAGVKKGDTVLVTGA 171

Query: 171 GGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNKVLEVSGG 230
           GGG+G+ A+ +A K   A+VI V  S +K  ++++ GA       +       V ++ G 
Sbjct: 172 GGGVGIHAIQLA-KALGARVIAVTRSPEKLKILKELGADYV---IDGSKFSEDVKKLGG- 226

Query: 231 KYANVVFEAVGGE 243
             A+VV E VG  
Sbjct: 227 --ADVVIELVGSP 237

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group contains proteins that share the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenase family. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine (His-51), the ribose of NAD, a serine (Ser-48), then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 332

>gnl|CDD|176212 cd08250, Mgc45594_like, Mgc45594 gene product and other MDR family members

 Score = 86.5 bits (215), Expect = 1e-19
 Identities = 60/195 (30%), Positives = 90/195 (46%), Gaps = 18/195 (9%)

Query: 49  INSSDLLLYNGSGDAKPTLPLVPGFEFSGTVIEVADTKSSSTEEDDEEDVLQVGDKVLAL 108
           IN+SD+    G  D     P   GFE  G V+ V +  +            +VGD V  +
Sbjct: 42  INASDINFTAGRYDPGVKPPFDCGFEGVGEVVAVGEGVTD----------FKVGDAVATM 91

Query: 109 NKELLHGFSDQCVVHTNDVFKIPEKMTFEHAASLADSYSTAQIVFSRHAKLKEKQTVLVT 168
           +      F++  VV       +PE         L  S  TA I      ++K  +TVLVT
Sbjct: 92  S---FGAFAEYQVVPARHAVPVPEL--KPEVLPLLVSGLTASIALEEVGEMKSGETVLVT 146

Query: 169 AAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNKVLEVS 228
           AA GG G  AV +A K+    VIG C+S++K + ++  G    + +  E   + +VL+  
Sbjct: 147 AAAGGTGQFAVQLA-KLAGCHVIGTCSSDEKAEFLKSLGCDRPINYKTED--LGEVLKKE 203

Query: 229 GGKYANVVFEAVGGE 243
             K  +VV+E+VGGE
Sbjct: 204 YPKGVDVVYESVGGE 218

Includes Human Mgc45594 gene product of undetermined function. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. Length = 329

>gnl|CDD|176234 cd08273, MDR8, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score = 86.5 bits (215), Expect = 2e-19
 Identities = 56/206 (27%), Positives = 94/206 (45%), Gaps = 25/206 (12%)

Query: 53  DLLLYNGSGDAKPTLPLVPGFEFSGTVIEVADTKSSSTEEDDEEDVLQVGDKVLALNKEL 112
           D+ +  G    +P LP  PG++  G V  +  +  +           +VGD+V AL +  
Sbjct: 43  DVQMRRGLYPDQPPLPFTPGYDLVGRVDAL-GSGVTG---------FEVGDRVAALTR-- 90

Query: 113 LHGFSDQCVVHTNDVFKIPEKMTFEHAASLADSYSTAQIVFSRHAKLKEKQTVLVTAAGG 172
           + G ++   +    +  +PE +    A  L  +Y TA  +  R AK+   Q VL+  A G
Sbjct: 91  VGGNAEYINLDAKYLVPVPEGVDAAEAVCLVLNYVTAYQMLHRAAKVLTGQRVLIHGASG 150

Query: 173 GLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNKVLEVSGGKY 232
           G+G A +++A     A+V G   SE     +R+ GA   + +  +  L   +    GG  
Sbjct: 151 GVGQALLELALLA-GAEVYGTA-SERNHAALRELGAT-PIDYRTKDWLPAMLTP--GG-- 203

Query: 233 ANVVFEAVGGEDKTDLIRQKGAWAAL 258
            +VVF+ VGGE   +      ++AAL
Sbjct: 204 VDVVFDGVGGESYEE------SYAAL 223

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 331

>gnl|CDD|176206 cd08244, MDR_enoyl_red, Possible enoyl reductase

 Score = 83.6 bits (207), Expect = 2e-18
 Identities = 57/186 (30%), Positives = 81/186 (43%), Gaps = 13/186 (6%)

Query: 58  NGSGDAKPTLPLVPGFEFSGTVIEVADTKSSSTEEDDEEDVLQVGDKVLALNKELLHGFS 117
            G G   P LP VPG E +G V  V             +    +G +V+A       G++
Sbjct: 50  WGPGPFPPELPYVPGGEVAGVVDAVGP---------GVDPAW-LGRRVVAHTGRAGGGYA 99

Query: 118 DQCVVHTNDVFKIPEKMTFEHAASLADSYSTAQIVFSRHAKLKEKQTVLVTAAGGGLGLA 177
           +  V   + +  +P+ +  E A ++     TA  +    A L     VLVTAA GGLG  
Sbjct: 100 ELAVADVDSLHPVPDGLDLEAAVAVVHDGRTALGLL-DLATLTPGDVVLVTAAAGGLGSL 158

Query: 178 AVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNKVLEVSGGKYANVVF 237
            V +A K   A V+G      KT L+R  GA  A+ +T      ++V E  GG    VV 
Sbjct: 159 LVQLA-KAAGATVVGAAGGPAKTALVRALGADVAVDYT-RPDWPDQVREALGGGGVTVVL 216

Query: 238 EAVGGE 243
           + VGG 
Sbjct: 217 DGVGGA 222

Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Candida tropicalis enoyl thioester reductase (Etr1p) catalyzes the NADPH-dependent reduction of trans-2-enoyl thioesters in mitochondrial fatty acid synthesis. Etr1p forms homodimers, with each subunit containing a nucleotide-binding Rossmann fold domain and a catalytic domain. Length = 324

>gnl|CDD|223992 COG1064, AdhP, Zn-dependent alcohol dehydrogenases [General function prediction only]

 Score = 82.3 bits (204), Expect = 6e-18
 Identities = 62/223 (27%), Positives = 94/223 (42%), Gaps = 54/223 (24%)

Query: 52  SDLLLYNGSGDAKPTLPLVPGFEFSGTVIEVADTKSSSTEEDDEEDV--LQVGDKV---- 105
           +DL +  G     P LPL+PG E  GTV+EV             E V  L+VGD+V    
Sbjct: 43  TDLHVAKG-DWPVPKLPLIPGHEIVGTVVEVG------------EGVTGLKVGDRVGVGW 89

Query: 106 -----------------LALNKELLH-----GFSDQCVVHTNDVFKIPEKMTFEHAASLA 143
                            L  N+++       G+++  VV    V KIPE +    AA L 
Sbjct: 90  LVISCGECEYCRSGNENLCPNQKITGYTTDGGYAEYVVVPARYVVKIPEGLDLAEAAPLL 149

Query: 144 DSYSTAQIVFS--RHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTD 201
            +  T    +   + A +K  + V V  A GGLG  AV  A K   A+VI +  SE+K +
Sbjct: 150 CAGIT---TYRALKKANVKPGKWVAVVGA-GGLGHMAVQYA-KAMGAEVIAITRSEEKLE 204

Query: 202 LIRQKGAWAALTFTNEKSLVNKVLEVSGGKYANVVFEAVGGED 244
           L ++ GA   +  ++    +  V      + A+ + + VG   
Sbjct: 205 LAKKLGADHVINSSDSD-ALEAV-----KEIADAIIDTVGPAT 241

Length = 339

>gnl|CDD|184316 PRK13771, PRK13771, putative alcohol dehydrogenase; Provisional

 Score = 82.0 bits (203), Expect = 6e-18
 Identities = 53/192 (27%), Positives = 87/192 (45%), Gaps = 26/192 (13%)

Query: 67  LPLVPGFEFSGTVIEVADTKSSST----------EEDDEEDVLQVGDKVLALNK-----E 111
            P++ G E  GTV EV +                  D   +  + G++    N+     E
Sbjct: 54  YPVILGHEVVGTVEEVGENVKGFKPGDRVASLLYAPDGTCEYCRSGEEAYCKNRLGYGEE 113

Query: 112 LLHGFSDQCVVHTNDVFKIPEKMTFEHAASLADSYSTAQIVFS-RHAKLKEKQTVLVTAA 170
           L   F++   V    + K+P  ++ E  A +     T  +    R A +K+ +TVLVT A
Sbjct: 114 LDGFFAEYAKVKVTSLVKVPPNVSDE-GAVIV-PCVTGMVYRGLRRAGVKKGETVLVTGA 171

Query: 171 GGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNKVLEVSGG 230
           GGG+G+ A+ +A K   AKVI V +SE K  ++ +   +A       K   ++ ++  GG
Sbjct: 172 GGGVGIHAIQVA-KALGAKVIAVTSSESKAKIVSK---YADYVIVGSK--FSEEVKKIGG 225

Query: 231 KYANVVFEAVGG 242
             A++V E VG 
Sbjct: 226 --ADIVIETVGT 235

Length = 334

>gnl|CDD|223991 COG1063, Tdh, Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]

 Score = 82.0 bits (203), Expect = 8e-18
 Identities = 56/221 (25%), Positives = 93/221 (42%), Gaps = 44/221 (19%)

Query: 52  SDLLLYNGSGDAKPTLPLVPGFEFSGTVIEVADTKSSSTEEDDEEDVLQVGDKV------ 105
           SDL +Y G     P   ++ G EF G V+EV                 +VGD+V      
Sbjct: 40  SDLHIYRGGEPFVPPGDIILGHEFVGEVVEVGVV-----------RGFKVGDRVVVEPNI 88

Query: 106 ---------------------LALNKELLH---GFSDQCVVHTND-VFKIPEKMTFEHAA 140
                                            GF++   V  +  + K+P+ +  E AA
Sbjct: 89  PCGHCRYCRAGEYNLCENPGFYGYAGLGGGIDGGFAEYVRVPADFNLAKLPDGIDEEAAA 148

Query: 141 SLADSYSTAQIVFSRHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKT 200
            L +  +TA    +  A ++   TV+V  AG  +GL A+ +A  +  + VI V  S ++ 
Sbjct: 149 -LTEPLATAYHGHAERAAVRPGGTVVVVGAGP-IGLLAIALAKLLGASVVIVVDRSPERL 206

Query: 201 DLIRQKGAWAALTFTNEKSLVNKVLEVSGGKYANVVFEAVG 241
           +L ++ G    +   +E     ++LE++GG+ A+VV EAVG
Sbjct: 207 ELAKEAGGADVVVNPSEDDAGAEILELTGGRGADVVIEAVG 247

Length = 350

>gnl|CDD|182701 PRK10754, PRK10754, quinone oxidoreductase, NADPH-dependent; Provisional

 Score = 79.4 bits (196), Expect = 6e-17
 Identities = 55/192 (28%), Positives = 93/192 (48%), Gaps = 16/192 (8%)

Query: 65  PTLPLVPGFEFSGTVIEVADTKSSSTEEDDEEDVLQVGDKVLALNKELLHGFSDQCVVHT 124
           P+LP   G E +G V +V                ++VGD+V    +  L  +S    V  
Sbjct: 55  PSLPSGLGTEAAGVVSKVGSGVKH----------IKVGDRV-VYAQSALGAYSSVHNVPA 103

Query: 125 NDVFKIPEKMTFEHAASLADSYSTAQIVFSRHAKLKEKQTVLVTAAGGGLGLAAVDMATK 184
           +    +P+ ++FE AA+      T   +  +  ++K  +  L  AA GG+GL A   A K
Sbjct: 104 DKAAILPDAISFEQAAASFLKGLTVYYLLRKTYEIKPDEQFLFHAAAGGVGLIACQWA-K 162

Query: 185 IYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNKVLEVSGGKYANVVFEAVGG-- 242
              AK+IG   S  K    ++ GAW  + +  E+++V +V E++GGK   VV+++VG   
Sbjct: 163 ALGAKLIGTVGSAQKAQRAKKAGAWQVINY-REENIVERVKEITGGKKVRVVYDSVGKDT 221

Query: 243 -EDKTDLIRQKG 253
            E   D ++++G
Sbjct: 222 WEASLDCLQRRG 233

Length = 327

>gnl|CDD|176198 cd08236, sugar_DH, NAD(P)-dependent sugar dehydrogenases

 Score = 77.3 bits (191), Expect = 3e-16
 Identities = 69/219 (31%), Positives = 99/219 (45%), Gaps = 44/219 (20%)

Query: 49  INSSDLLLYNGSGDAKPTLPLVPGFEFSGTVIEVADTKSSSTEEDDEEDVLQVGDKV--- 105
           I  SD+  Y G+G   P  PLV G EFSGTV EV              D L VGD+V   
Sbjct: 36  ICGSDIPRYLGTGAYHP--PLVLGHEFSGTVEEVGS----------GVDDLAVGDRVAVN 83

Query: 106 -----------------LALNKELL----HG-FSDQCVVHTNDVFKIPEKMTFEHAASLA 143
                            L  N + +     G F++   V   ++ KIP+ + +E AA + 
Sbjct: 84  PLLPCGKCEYCKKGEYSLCSNYDYIGSRRDGAFAEYVSVPARNLIKIPDHVDYEEAA-MI 142

Query: 144 DSYSTAQIVFSRHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKAK-VIGVCNSEDKTDL 202
           +  + A     R A +    TV+V  A G +GL A+    KI  AK VI V   ++K  +
Sbjct: 143 EPAAVALHAV-RLAGITLGDTVVVIGA-GTIGLLAI-QWLKILGAKRVIAVDIDDEKLAV 199

Query: 203 IRQKGAWAALTFTNEKSLVNKVLEVSGGKYANVVFEAVG 241
            R+ G  A  T   ++  V KV E++ G+ A++V EA G
Sbjct: 200 ARELG--ADDTINPKEEDVEKVRELTEGRGADLVIEAAG 236

This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Horse liver alcohol dehydrogenase is a dimeric enzyme and each subunit has two domains. The NAD binding domain is in a Rossmann fold and the catalytic domain contains a zinc ion to which substrates bind. There is a cleft between the domains that closes upon formation of the ternary complex. Length = 343

>gnl|CDD|176216 cd08254, hydroxyacyl_CoA_DH, 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members

 Score = 76.5 bits (189), Expect = 5e-16
 Identities = 60/216 (27%), Positives = 84/216 (38%), Gaps = 41/216 (18%)

Query: 52  SDL-LLYNGSGDAKPTLPLVPGFEFSGTVIEVADTKSSSTEEDDEEDVLQVGDKV----- 105
           SDL +L  G       LPL  G E +GTV+EV                 +VGD+V     
Sbjct: 41  SDLHILDGGVPTLTK-LPLTLGHEIAGTVVEV----------GAGVTNFKVGDRVAVPAV 89

Query: 106 -----------------LALNKELLH---GFSDQCVVHTNDVFKIPEKMTFEHAASLADS 145
                            L      L    GF++  VV    +  +P+ + F  AA   D+
Sbjct: 90  IPCGACALCRRGRGNLCLNQGMPGLGIDGGFAEYIVVPARALVPVPDGVPFAQAAVATDA 149

Query: 146 YSTAQIVFSRHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQ 205
             T      R  ++K  +TVLV    GGLGL AV +A K   A VI V   E+K +L ++
Sbjct: 150 VLTPYHAVVRAGEVKPGETVLVIGL-GGLGLNAVQIA-KAMGAAVIAVDIKEEKLELAKE 207

Query: 206 KGAWAALTFTNEKSLVNKVLEVSGGKYANVVFEAVG 241
            G  A     +             G   +V+F+ VG
Sbjct: 208 LG--ADEVLNSLDDSPKDKKAAGLGGGFDVIFDFVG 241

This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 338

>gnl|CDD|176232 cd08271, MDR5, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score = 75.8 bits (187), Expect = 1e-15
 Identities = 50/188 (26%), Positives = 90/188 (47%), Gaps = 14/188 (7%)

Query: 58  NGSGDAKPTLPLVPGFEFSGTVIEVADTKSSSTEEDDEEDVLQVGDKVLALNKELLHG-F 116
              G    + P VPG + +G V+ V    +            +VGD+V         G F
Sbjct: 47  IAWGPPAWSYPHVPGVDGAGVVVAVGAKVTGW----------KVGDRVAYHASLARGGSF 96

Query: 117 SDQCVVHTNDVFKIPEKMTFEHAASLADSYSTAQIVFSRHAKLKEKQTVLVTAAGGGLGL 176
           ++  VV    V  +P+ ++FE AA+L  +  TA     +  +++  +T+L+T   GG+G 
Sbjct: 97  AEYTVVDARAVLPLPDSLSFEEAAALPCAGLTAYQALFKKLRIEAGRTILITGGAGGVGS 156

Query: 177 AAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNKVLEVSGGKYANVV 236
            AV +A K    +VI  C S+   + ++  GA   + + +E  +  ++ E++GG+  + V
Sbjct: 157 FAVQLA-KRAGLRVITTC-SKRNFEYVKSLGADHVIDYNDE-DVCERIKEITGGRGVDAV 213

Query: 237 FEAVGGED 244
            + VGGE 
Sbjct: 214 LDTVGGET 221

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 325

>gnl|CDD|176233 cd08272, MDR6, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score = 74.1 bits (183), Expect = 3e-15
 Identities = 59/202 (29%), Positives = 88/202 (43%), Gaps = 21/202 (10%)

Query: 47  TRINSSDLLLYNGSGDAKPTLPLVPGFEFSGTVIEVADTKSSSTEEDDEEDV--LQVGDK 104
           + +N  D  +  G   A+P LP + G + +G V  V             E V   +VGD+
Sbjct: 37  SGVNPLDTKIRRGGAAARPPLPAILGCDVAGVVEAVG------------EGVTRFRVGDE 84

Query: 105 VLALNKEL--LHG-FSDQCVVHTNDVFKIPEKMTFEHAASLADSYSTAQIVFSRHAKLKE 161
           V      L  L G  ++  VV    +   P  ++   AA+L     TA       A ++ 
Sbjct: 85  VYGCAGGLGGLQGSLAEYAVVDARLLALKPANLSMREAAALPLVGITAWEGLVDRAAVQA 144

Query: 162 KQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLV 221
            QTVL+    GG+G  AV +A K   A+V     S +K    R  GA   + +     +V
Sbjct: 145 GQTVLIHGGAGGVGHVAVQLA-KAAGARVYATA-SSEKAAFARSLGADPIIYYRET--VV 200

Query: 222 NKVLEVSGGKYANVVFEAVGGE 243
             V E +GG+  +VVF+ VGGE
Sbjct: 201 EYVAEHTGGRGFDVVFDTVGGE 222

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 326

>gnl|CDD|176221 cd08260, Zn_ADH6, Alcohol dehydrogenases of the MDR family

 Score = 74.2 bits (183), Expect = 4e-15
 Identities = 62/209 (29%), Positives = 95/209 (45%), Gaps = 44/209 (21%)

Query: 62  DAKPTLPLVPGFEFSGTVIEVADTKSSSTEEDDEEDV--LQVGDKV-------------- 105
           D   TLP VPG EF+G V+EV             EDV   +VGD+V              
Sbjct: 49  DPDVTLPHVPGHEFAGVVVEVG------------EDVSRWRVGDRVTVPFVLGCGTCPYC 96

Query: 106 LALNKEL----------LHG-FSDQCVVHTNDV--FKIPEKMTFEHAASLADSYSTAQIV 152
            A +  +            G F++   V   DV   ++P+ + F  AA L   ++TA   
Sbjct: 97  RAGDSNVCEHQVQPGFTHPGSFAEYVAVPRADVNLVRLPDDVDFVTAAGLGCRFATAFRA 156

Query: 153 FSRHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAAL 212
               A++K  + V V    GG+GL+AV M      A+VI V   +DK +L R+ GA A +
Sbjct: 157 LVHQARVKPGEWVAVHGC-GGVGLSAV-MIASALGARVIAVDIDDDKLELARELGAVATV 214

Query: 213 TFTNEKSLVNKVLEVSGGKYANVVFEAVG 241
             +  + +   V +++GG  A+V  +A+G
Sbjct: 215 NASEVEDVAAAVRDLTGGG-AHVSVDALG 242

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 345

>gnl|CDD|176235 cd08274, MDR9, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score = 73.9 bits (182), Expect = 5e-15
 Identities = 56/197 (28%), Positives = 84/197 (42%), Gaps = 27/197 (13%)

Query: 68  PLVPGFEFSGTVIEVA--------------DTKSSSTEEDDEEDVLQVGDKVLALNKELL 113
           P + G +  G V+ V               D       EDD  D+  +G        E  
Sbjct: 78  PRIQGADIVGRVVAVGEGVDTARIGERVLVDPSIRDPPEDDPADIDYIG-------SERD 130

Query: 114 HGFSDQCVVHTNDVFKIPEKMTFEHAASLADSYSTAQIVFSRHAKLKEKQTVLVTAAGGG 173
            GF++  VV   + + +   ++    A+   SYSTA+ +  R A +   +TVLVT A GG
Sbjct: 131 GGFAEYTVVPAENAYPVNSPLSDVELATFPCSYSTAENMLER-AGVGAGETVLVTGASGG 189

Query: 174 LGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNKVLEVSGGKYA 233
           +G A V +A K   A VI V     K + +R  G   A T     + +    +  GG+  
Sbjct: 190 VGSALVQLA-KRRGAIVIAVA-GAAKEEAVRALG---ADTVILRDAPLLADAKALGGEPV 244

Query: 234 NVVFEAVGGEDKTDLIR 250
           +VV + VGG    DL+R
Sbjct: 245 DVVADVVGGPLFPDLLR 261

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 350

>gnl|CDD|176222 cd08261, Zn_ADH7, Alcohol dehydrogenases of the MDR family

 Score = 73.4 bits (181), Expect = 6e-15
 Identities = 61/218 (27%), Positives = 100/218 (45%), Gaps = 48/218 (22%)

Query: 52  SDLLLYNGSGDAKP--TLPLVPGFEFSGTVIEVADTKSSSTEEDDEEDVLQVGDKVLAL- 108
           SDL +Y+G     P  + P + G E SG V+EV           +    L+VGD+V+   
Sbjct: 39  SDLHIYHGR---NPFASYPRILGHELSGEVVEV----------GEGVAGLKVGDRVVVDP 85

Query: 109 -------------------NKELL--H---GFSDQCVVHTNDVFKIPEKMTFEHAASLAD 144
                              N ++L  H   GF++  VV   D   +PE ++ + AA L +
Sbjct: 86  YISCGECYACRKGRPNCCENLQVLGVHRDGGFAEYIVVPA-DALLVPEGLSLDQAA-LVE 143

Query: 145 SYST-AQIVFSRHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLI 203
             +  A  V  R A +    TVLV  AG  +GL  + +A K   A+VI V   +++ +  
Sbjct: 144 PLAIGAHAV--RRAGVTAGDTVLVVGAGP-IGLGVIQVA-KARGARVIVVDIDDERLEFA 199

Query: 204 RQKGAWAALTFTNEKSLVNKVLEVSGGKYANVVFEAVG 241
           R+ GA   +   +E  +  ++ E++ G+ A+VV +A G
Sbjct: 200 RELGADDTINVGDED-VAARLRELTDGEGADVVIDATG 236

This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 337

>gnl|CDD|176210 cd08248, RTN4I1, Human Reticulon 4 Interacting Protein 1

 Score = 71.1 bits (175), Expect = 5e-14
 Identities = 50/188 (26%), Positives = 81/188 (43%), Gaps = 21/188 (11%)

Query: 62  DAKPTLPLVPGFEFSGTVIEVADTKSSSTEEDDEEDVLQVGDKVLALNKELLHG-FSDQC 120
            +    PL  G + SG V+++     S           ++GD+V         G  ++  
Sbjct: 68  YSGIEFPLTLGRDCSGVVVDIGSGVKS----------FEIGDEVWGAVPPWSQGTHAEYV 117

Query: 121 VVHTNDVFKIPEKMTFEHAASLADSYSTAQIVFSRHAKLKEKQT----VLVTAAGGGLGL 176
           VV  N+V K P+ ++ E AASL  +  TA         L  K      VL+    GG+G 
Sbjct: 118 VVPENEVSKKPKNLSHEEAASLPYAGLTAWSALVNVGGLNPKNAAGKRVLILGGSGGVGT 177

Query: 177 AAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNKVLEVSGGKYANVV 236
            A+ +  K + A V   C S D   L++  GA   + + NE     ++ E   GK+ +V+
Sbjct: 178 FAIQLL-KAWGAHVTTTC-STDAIPLVKSLGADDVIDYNNE-DFEEELTER--GKF-DVI 231

Query: 237 FEAVGGED 244
            + VGG+ 
Sbjct: 232 LDTVGGDT 239

Human Reticulon 4 Interacting Protein 1 is a member of the medium chain dehydrogenase/ reductase (MDR) family. Riticulons are endoplasmic reticulum associated proteins involved in membrane trafficking and neuroendocrine secretion. The MDR/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. Length = 350

>gnl|CDD|176195 cd08233, butanediol_DH_like, (2R,3R)-2,3-butanediol dehydrogenase

 Score = 69.5 bits (171), Expect = 2e-13
 Identities = 70/266 (26%), Positives = 104/266 (39%), Gaps = 67/266 (25%)

Query: 66  TLPLVPGFEFSGTVIEVADTKSSSTEEDDEEDV--LQVGDKV-----------LALNKEL 112
           T P+  G EFSG V+EV               V   +VGD+V            A  + L
Sbjct: 63  TAPVTLGHEFSGVVVEVG------------SGVTGFKVGDRVVVEPTIKCGTCGACKRGL 110

Query: 113 LH---------------GFSDQCVVHTNDVFKIPEKMTFEHAA---SLADSYSTAQIVFS 154
            +               GF++  VV    V K+P+ +  E AA    LA ++        
Sbjct: 111 YNLCDSLGFIGLGGGGGGFAEYVVVPAYHVHKLPDNVPLEEAALVEPLAVAWHAV----- 165

Query: 155 RHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKA-KVIGVCNSEDKTDLIRQKGAWAALT 213
           R +  K   T LV  A G +GL  + +A K   A K+I    SE + +L  + G  A + 
Sbjct: 166 RRSGFKPGDTALVLGA-GPIGLLTI-LALKAAGASKIIVSEPSEARRELAEELG--ATIV 221

Query: 214 FT-NEKSLVNKVLEVSGGKYANVVFEAVGGEDKT-----DLIRQKGA------WAALTFT 261
               E  +V +V +++GG   +V F+  G +  T     D +R +G       W      
Sbjct: 222 LDPTEVDVVAEVRKLTGGGGVDVSFDCAGVQ-ATLDTAIDALRPRGTAVNVAIWEKPISF 280

Query: 262 NEKSLVNKVLEVSGG-KYANVVFEAV 286
           N   LV K   ++G   Y    FE V
Sbjct: 281 NPNDLVLKEKTLTGSICYTREDFEEV 306

(2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Length = 351

>gnl|CDD|176211 cd08249, enoyl_reductase_like, enoyl_reductase_like

 Score = 68.8 bits (169), Expect = 3e-13
 Identities = 57/254 (22%), Positives = 96/254 (37%), Gaps = 38/254 (14%)

Query: 65  PTLPLVPGFEFSGTVIEVADTKSSSTEEDDEEDVLQVGDKVLAL-----NKELLHG-FSD 118
           P+ P + G +F+GTV+EV    S  T         +VGD+V          +  +G F +
Sbjct: 52  PSYPAILGCDFAGTVVEVG---SGVTR-------FKVGDRVAGFVHGGNPNDPRNGAFQE 101

Query: 119 QCVVHTNDVFKIPEKMTFEHAASLADSYSTAQIVFSRHAKL----------KEKQTVLVT 168
             V   +   KIP+ ++FE AA+L     TA +   +   L           + + VL+ 
Sbjct: 102 YVVADADLTAKIPDNISFEEAATLPVGLVTAALALFQKLGLPLPPPKPSPASKGKPVLIW 161

Query: 169 AAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFT-NEKSLVNKVLEV 227
                +G  A+ +A K+   KVI    S    DL++  G  A   F  ++  +V  +   
Sbjct: 162 GGSSSVGTLAIQLA-KLAGYKVITTA-SPKNFDLVKSLG--ADAVFDYHDPDVVEDIRAA 217

Query: 228 SGGKYANVVFEAVGGEDKTDLI------RQKGAWAALTFTNEKSLVNKVLEVSGGKYANV 281
           +GGK      + +   +   L          G   +L    E++   K ++V       V
Sbjct: 218 TGGKLR-YALDCISTPESAQLCAEALGRSGGGKLVSLLPVPEETEPRKGVKVKFVLGYTV 276

Query: 282 VFEAVGGEVFKAAM 295
             E      F    
Sbjct: 277 FGEIPEDREFGEVF 290

Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Candida tropicalis enoyl thioester reductase (Etr1p) catalyzes the NADPH-dependent reduction of trans-2-enoyl thioesters in mitochondrial fatty acid synthesis. Etr1p forms homodimers with each subunit containing a nucleotide-binding Rossmann fold domain and a catalytic domain. Length = 339

>gnl|CDD|176181 cd05278, FDH_like, Formaldehyde dehydrogenases

 Score = 68.5 bits (168), Expect = 4e-13
 Identities = 66/245 (26%), Positives = 102/245 (41%), Gaps = 48/245 (19%)

Query: 32  PGFEFSGTIIEKKMMTRINSSDLLLYNGSGD-AKPTLPLVPGFEFSGTVIEV-ADTKSSS 89
           P  +     I +   T I  SDL +Y G    AK    ++ G EF G V+EV +D K   
Sbjct: 20  PKIQGPHDAIVRVTATSICGSDLHIYRGGVPGAKH--GMILGHEFVGEVVEVGSDVKR-- 75

Query: 90  TEEDDEEDVLQVGDKVLA-------LNKELLHGFSDQC-------------------VVH 123
                    L+ GD+V           +    G+   C                    V 
Sbjct: 76  ---------LKPGDRVSVPCITFCGRCRFCRRGYHAHCENGLWGWKLGNRIDGGQAEYVR 126

Query: 124 TND----VFKIPEKMTFEHAASLADSYSTAQIVFSRHAKLKEKQTVLVTAAGGGLGLAAV 179
                  + KIP+ +  E A  L+D   T     +  A +K   TV V  AG  +GL AV
Sbjct: 127 VPYADMNLAKIPDGLPDEDALMLSDILPTGFHG-AELAGIKPGSTVAVIGAGP-VGLCAV 184

Query: 180 DMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNKVLEVSGGKYANVVFEA 239
             A  +  A++I V ++ ++ DL ++ GA   +   N   +V ++LE++GG+  + V EA
Sbjct: 185 AGARLLGAARIIAVDSNPERLDLAKEAGATDIINPKNG-DIVEQILELTGGRGVDCVIEA 243

Query: 240 VGGED 244
           VG E+
Sbjct: 244 VGFEE 248

Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Length = 347

>gnl|CDD|176219 cd08258, Zn_ADH4, Alcohol dehydrogenases of the MDR family

 Score = 67.0 bits (164), Expect = 9e-13
 Identities = 64/237 (27%), Positives = 99/237 (41%), Gaps = 54/237 (22%)

Query: 52  SDLLLYNGSGDAKPTLPLVPGFEFSGTVIEVADTKSSSTEEDDEEDV--LQVGDKVLALN 109
           SDL +Y G  D     P+V G EFSGT++EV              DV   +VGD+V++  
Sbjct: 41  SDLHIYKGDYDP-VETPVVLGHEFSGTIVEVG------------PDVEGWKVGDRVVSET 87

Query: 110 -------------KELLH-------------GFSDQCVVHTNDVFKIPEKMTFEHAA--- 140
                         +                GF++  +V    + ++PE ++ E AA   
Sbjct: 88  TFSTCGRCPYCRRGDYNLCPHRKGIGTQADGGFAEYVLVPEESLHELPENLSLEAAALTE 147

Query: 141 SLADSYSTAQIVFSRHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKT 200
            LA +      V  R + ++   TV+V   G  +GL A  +A K+  A V+ V   +D+ 
Sbjct: 148 PLAVAV---HAVAER-SGIRPGDTVVVFGPGP-IGLLAAQVA-KLQGATVVVVGTEKDEV 201

Query: 201 DLIRQKGAWAALTFTNEKSLVNKVLEVSGGKYANVVFEAVGG----EDKTDLIRQKG 253
            L   K   A      E+ L   V E++ G  A+VV E  G     E   +L+R+ G
Sbjct: 202 RLDVAKELGADAVNGGEEDLAELVNEITDGDGADVVIECSGAVPALEQALELLRKGG 258

This group shares the zinc coordination sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 306

>gnl|CDD|176257 cd08297, CAD3, Cinnamyl alcohol dehydrogenases (CAD)

 Score = 67.2 bits (165), Expect = 1e-12
 Identities = 56/205 (27%), Positives = 84/205 (40%), Gaps = 39/205 (19%)

Query: 52  SDLLLYNGSGDAKPTLPLVPGFEFSGTVIEVADTKSSSTEEDDEEDVLQVGDKVLALN-- 109
           +DL    G    KP LPL+ G E +G V+ V    S           L+VGD+V      
Sbjct: 41  TDLHAALGDWPVKPKLPLIGGHEGAGVVVAVGPGVSG----------LKVGDRVGVKWLY 90

Query: 110 ------------------KELLHG------FSDQCVVHTNDVFKIPEKMTFEHAASLADS 145
                              +   G      F++  +     V  IP+ ++FE AA L  +
Sbjct: 91  DACGKCEYCRTGDETLCPNQKNSGYTVDGTFAEYAIADARYVTPIPDGLSFEQAAPLLCA 150

Query: 146 YSTAQIVFSRHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQ 205
             T      + A LK    V+++ AGGGLG   V  A K    +VI +   ++K +L ++
Sbjct: 151 GVTVYKALKK-AGLKPGDWVVISGAGGGLGHLGVQYA-KAMGLRVIAIDVGDEKLELAKE 208

Query: 206 KGAWAALTFTNEKSLVNKVLEVSGG 230
            GA A + F      V  V E++GG
Sbjct: 209 LGADAFVDFKKS-DDVEAVKELTGG 232

These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 341

>gnl|CDD|176187 cd05284, arabinose_DH_like, D-arabinose dehydrogenase

 Score = 65.3 bits (160), Expect = 4e-12
 Identities = 60/237 (25%), Positives = 94/237 (39%), Gaps = 49/237 (20%)

Query: 52  SDLLLYNGSGDAK----PTLPLVPGFEFSGTVIEVADTKSSSTEEDDEEDVLQVGDKVL- 106
           SDL +    G         LP   G E +G V EV              D L+ GD V+ 
Sbjct: 40  SDLHVI--DGVWGGILPYKLPFTLGHENAGWVEEVGS----------GVDGLKEGDPVVV 87

Query: 107 ------------ALNKELLH------------GFSDQCVVHTNDVFKIPEKMTFEHAASL 142
                          +E               GF++  +V +  + K+P  +    AA L
Sbjct: 88  HPPWGCGTCRYCRRGEENYCENARFPGIGTDGGFAEYLLVPSRRLVKLPRGLDPVEAAPL 147

Query: 143 ADSYSTAQIVFSRHAKLKEK-QTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTD 201
           AD+  TA     +     +   TV+V   GG LG  AV +   +  A VI V  SE+   
Sbjct: 148 ADAGLTAYHAVKKALPYLDPGSTVVVIGVGG-LGHIAVQILRALTPATVIAVDRSEEALK 206

Query: 202 LIRQKGAWAALTFTNEKSLVNKVLEVSGGKYANVVFEAVGGEDKTD----LIRQKGA 254
           L  + GA   L  +++  +V +V E++GG+ A+ V + VG ++       L+ + G 
Sbjct: 207 LAERLGADHVLNASDD--VVEEVRELTGGRGADAVIDFVGSDETLALAAKLLAKGGR 261

This group contains arabinose dehydrogenase (AraDH) and related alcohol dehydrogenases. AraDH is a member of the medium chain dehydrogenase/reductase family and catalyzes the NAD(P)-dependent oxidation of D-arabinose and other pentoses, the initial step in the metabolism of d-arabinose into 2-oxoglutarate. Like the alcohol dehydrogenases, AraDH binds a zinc in the catalytic cleft as well as a distal structural zinc. AraDH forms homotetramers as a dimer of dimers. AraDH replaces a conserved catalytic His with replace with Arg, compared to the canonical ADH site. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 340

>gnl|CDD|176251 cd08291, ETR_like_1, 2-enoyl thioester reductase (ETR) like proteins, child 1

 Score = 63.8 bits (156), Expect = 1e-11
 Identities = 54/199 (27%), Positives = 90/199 (45%), Gaps = 21/199 (10%)

Query: 49  INSSDLLLYNGSGDAKPTLPLVPGFEFSGTVIEVADTKSSSTEEDDEEDVLQVGDKVLAL 108
           IN SDL    G   +   LP+ PGFE SGTV+                  L +G +V  L
Sbjct: 42  INPSDLGFLKGQYGSTKALPVPPGFEGSGTVVAAGG--------GPLAQSL-IGKRVAFL 92

Query: 109 NKELLHG-FSDQCVVHTNDVFKIPEKMTFEHAASLADSYSTAQIVFSRHAKLKEKQTVLV 167
                +G +++  V        +P+ ++FE  AS   +  TA +     A+ +  + V+ 
Sbjct: 93  AGS--YGTYAEYAVADAQQCLPLPDGVSFEQGASSFVNPLTA-LGMLETAREEGAKAVVH 149

Query: 168 TAAGGGLGLAAVDMATKIYKA---KVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNKV 224
           TAA   LG     M  ++ KA   KVI +   +++ DL+++ GA   L  +++   +  +
Sbjct: 150 TAAASALG----RMLVRLCKADGIKVINIVRRKEQVDLLKKIGAEYVLN-SSDPDFLEDL 204

Query: 225 LEVSGGKYANVVFEAVGGE 243
            E+     A + F+AVGG 
Sbjct: 205 KELIAKLNATIFFDAVGGG 223

2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Candida tropicalis enoyl thioester reductase (Etr1p) catalyzes the NADPH-dependent reduction of trans-2-enoyl thioesters in mitochondrial fatty acid synthesis. Etr1p forms homodimers, with each subunit containing a nucleotide-binding Rossmann fold domain and a catalytic domain. Length = 324

>gnl|CDD|176205 cd08243, quinone_oxidoreductase_like_1, Quinone oxidoreductase (QOR)

 Score = 63.8 bits (156), Expect = 1e-11
 Identities = 38/165 (23%), Positives = 65/165 (39%), Gaps = 20/165 (12%)

Query: 49  INSSDLLLYNG-SGDAKPTLPLVPGFEFSGTVIEVADTKSSSTEEDDEEDVLQVGDKVLA 107
           +N S++    G S   K   P V G E  G V E                    G +V  
Sbjct: 39  LNRSEIFTRQGHSPSVK--FPRVLGIEAVGEVEE------------APGGTFTPGQRVAT 84

Query: 108 LNKELLH----GFSDQCVVHTNDVFKIPEKMTFEHAASLADSYSTAQIVFSRHAKLKEKQ 163
               +       +++  +V    V+ I   +++   A+L ++Y TA     R   L+   
Sbjct: 85  AMGGMGRTFDGSYAEYTLVPNEQVYAIDSDLSWAELAALPETYYTAWGSLFRSLGLQPGD 144

Query: 164 TVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGA 208
           T+L+      +GLAA+ +A K   A V     S ++  L+++ GA
Sbjct: 145 TLLIRGGTSSVGLAALKLA-KALGATVTATTRSPERAALLKELGA 188

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Length = 320

>gnl|CDD|176196 cd08234, threonine_DH_like, L-threonine dehydrogenase

 Score = 62.9 bits (154), Expect = 2e-11
 Identities = 59/221 (26%), Positives = 86/221 (38%), Gaps = 57/221 (25%)

Query: 53  DLLLYNGSGDAKPTLPLVPGFEFSGTVIEVADTKSSSTEEDDEEDV--LQVGDKVLALNK 110
           DL +Y G   A P  PLVPG EF+G V+ V               V   +VGD+V     
Sbjct: 40  DLHIYEGEFGAAP--PLVPGHEFAGVVVAVG------------SKVTGFKVGDRVAVDPN 85

Query: 111 ELLH-------------------------GFSDQCVVHTNDVFKIPEKMTFEHAASLADS 145
                                        GF++  VV    V+KIP+ ++FE AA LA+ 
Sbjct: 86  IYCGECFYCRRGRPNLCENLTAVGVTRNGGFAEYVVVPAKQVYKIPDNLSFEEAA-LAEP 144

Query: 146 YSTAQIVFSRH----AKLKEKQTVLVTAAGGG-LGLAAVDMATKIYKAKVIGVCNSEDKT 200
            S A      H      +K   +VLV   G G +GL    +      ++V     +E+K 
Sbjct: 145 LSCAV-----HGLDLLGIKPGDSVLVF--GAGPIGLLLAQLLKLNGASRVTVAEPNEEKL 197

Query: 201 DLIRQKGAWAALTFTNEKSLVNKVLEVSGGKYANVVFEAVG 241
           +L ++ G  A  T    +       E +   + +VV EA G
Sbjct: 198 ELAKKLG--ATETVDPSREDPEAQKEDNPYGF-DVVIEATG 235

L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Length = 334

>gnl|CDD|176183 cd05280, MDR_yhdh_yhfp, Yhdh and yhfp-like putative quinone oxidoreductases

 Score = 62.2 bits (152), Expect = 4e-11
 Identities = 55/222 (24%), Positives = 93/222 (41%), Gaps = 31/222 (13%)

Query: 49  INSSDLLLYNGSGDAKPTLPLVPGFEFSGTVIEVADTKSSSTEEDDEEDVLQVGDKVLAL 108
           +N  D L   G+G      P  PG + +GTV+   D +             + GD+VL  
Sbjct: 39  LNYKDALAATGNGGVTRNYPHTPGIDAAGTVVSSDDPR------------FREGDEVLVT 86

Query: 109 NKEL--LH--GFSDQCVVHTNDVFKIPEKMTFEHAASLADSYSTAQIV---FSRHAKLKE 161
             +L      GF++   V  + V  +PE ++   A  L  +  TA +       + +  E
Sbjct: 87  GYDLGMNTDGGFAEYVRVPADWVVPLPEGLSLREAMILGTAGFTAALSVHRLEDNGQTPE 146

Query: 162 KQTVLVTAAGGGLGLAAVDMATKI-YKAKVIGVCNSEDKTDLIRQKGAWAAL---TFTNE 217
              VLVT A GG+G  AV +  K+ Y   V+ +   E++ D ++  GA   L      +E
Sbjct: 147 DGPVLVTGATGGVGSIAVAILAKLGY--TVVALTGKEEQADYLKSLGASEVLDREDLLDE 204

Query: 218 KSLVNKVLEVSGGKYANVVFEAVGGEDKTDLIRQKGAWAALT 259
                K L     ++A  + + VGG+   +L++Q      + 
Sbjct: 205 SK---KPLL--KARWAGAI-DTVGGDVLANLLKQTKYGGVVA 240

Yhdh and yhfp-like putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 325

>gnl|CDD|176193 cd08231, MDR_TM0436_like, Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH)

 Score = 62.3 bits (152), Expect = 5e-11
 Identities = 53/225 (23%), Positives = 89/225 (39%), Gaps = 41/225 (18%)

Query: 52  SDLLLYNGSGDAKPTLPLVPGFEFSGTVIEVADTKSSSTEEDDEEDVLQVGDKV------ 105
           SD+    G     P LP++ G E  G V+ +    +     D   + L+VGD+V      
Sbjct: 40  SDVHTVAGRRPRVP-LPIILGHEGVGRVVALGGGVT----TDVAGEPLKVGDRVTWSVGA 94

Query: 106 --------------LALNK------------ELLHGFSDQCVVH-TNDVFKIPEKMTFEH 138
                            N+             L  G+++   +     + ++P+ +  E 
Sbjct: 95  PCGRCYRCLVGDPTKCENRKKYGHEASCDDPHLSGGYAEHIYLPPGTAIVRVPDNVPDEV 154

Query: 139 AASLADSYSTAQIVFSRHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSED 198
           AA    + +T      R   +    TV+V  AG  LGL AV  A      +VI +  S +
Sbjct: 155 AAPANCALATVLAALDRAGPVGAGDTVVVQGAGP-LGLYAVAAAKLAGARRVIVIDGSPE 213

Query: 199 KTDLIRQKGAWA--ALTFTNEKSLVNKVLEVSGGKYANVVFEAVG 241
           + +L R+ GA A   +    +      V +++GG+ A+VV EA G
Sbjct: 214 RLELAREFGADATIDIDELPDPQRRAIVRDITGGRGADVVIEASG 258

This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. Length = 361

>gnl|CDD|176224 cd08263, Zn_ADH10, Alcohol dehydrogenases of the MDR family

 Score = 60.5 bits (147), Expect = 2e-10
 Identities = 52/237 (21%), Positives = 89/237 (37%), Gaps = 58/237 (24%)

Query: 52  SDLLLYNGSGDAKPTLPLVPGFEFSGTVIEVADTKSSSTEEDDEEDVLQVGDKVLA---- 107
           SDL +  G  +     P V G E SG V+EV           +    L VGD+V+     
Sbjct: 40  SDLHVLKG--ELPFPPPFVLGHEISGEVVEVGP-------NVENPYGLSVGDRVVGSFIM 90

Query: 108 -----------------------LNKELLH--------------------GFSDQCVVHT 124
                                    K  L+                    G ++  VV  
Sbjct: 91  PCGKCRYCARGKENLCEDFFAYNRLKGTLYDGTTRLFRLDGGPVYMYSMGGLAEYAVVPA 150

Query: 125 NDVFKIPEKMTFEHAASLADSYSTAQIVFSRHAKLKEKQTVLVTAAGGGLGLAAVDMATK 184
             +  +PE + +  +A L  +  TA       A ++  +TV V   GG +G +A+ +A  
Sbjct: 151 TALAPLPESLDYTESAVLGCAGFTAYGALKHAADVRPGETVAVIGVGG-VGSSAIQLAKA 209

Query: 185 IYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNKVLEVSGGKYANVVFEAVG 241
              + +I V   ++K    ++ GA   +    ++  V  + E++GG+  +VV EA+G
Sbjct: 210 FGASPIIAVDVRDEKLAKAKELGATHTVN-AAKEDAVAAIREITGGRGVDVVVEALG 265

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 367

>gnl|CDD|176250 cd08290, ETR, 2-enoyl thioester reductase (ETR)

 Score = 60.3 bits (147), Expect = 2e-10
 Identities = 48/177 (27%), Positives = 73/177 (41%), Gaps = 28/177 (15%)

Query: 49  INSSDLLLYNGSGDAKPT----LPLVPGFEFSGTVIEVADTKSSSTEEDDEEDVLQVGDK 104
           IN +D+    G    KP      P V G E  G V++V     S          L+ GD 
Sbjct: 41  INPADINQIQGVYPIKPPTTPEPPAVGGNEGVGEVVKVGSGVKS----------LKPGDW 90

Query: 105 VLALNKEL----LHGFSDQCVVHTNDVFKIPEKMTFEHAASLADSYSTAQIVFSRHAKLK 160
           V+ L   L     H      VV  +D+ K+P  +  E AA+L+ +  TA  +     KL+
Sbjct: 91  VIPLRPGLGTWRTHA-----VVPADDLIKVPNDVDPEQAATLSVNPCTAYRLLEDFVKLQ 145

Query: 161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVC----NSEDKTDLIRQKGAWAALT 213
               V+   A   +G A + +A K+   K I V     + E+  + ++  GA   LT
Sbjct: 146 PGDWVIQNGANSAVGQAVIQLA-KLLGIKTINVVRDRPDLEELKERLKALGADHVLT 201

2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains, at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Candida tropicalis enoyl thioester reductase (Etr1p) catalyzes the NADPH-dependent reduction of trans-2-enoyl thioesters in mitochondrial fatty acid synthesis. Etr1p forms homodimers, with each subunit containing a nucleotide-binding Rossmann fold domain and a catalytic domain. Length = 341

>gnl|CDD|176209 cd08247, AST1_like, AST1 is a cytoplasmic protein associated with the periplasmic membrane in yeast

 Score = 59.6 bits (145), Expect = 3e-10
 Identities = 53/209 (25%), Positives = 84/209 (40%), Gaps = 24/209 (11%)

Query: 49  INSSDLLLYNGSGDAKPTLPLVPGFEFSGTVIEVADTKSSSTEEDDEEDVLQVGDKVLAL 108
           +N  DL LYN             G ++SG +++V           +     +VGD+V  +
Sbjct: 40  LNPVDLKLYNSYTFHFKVKEKGLGRDYSGVIVKVGS---------NVASEWKVGDEVCGI 90

Query: 109 NKELLHG---FSDQCVVHTNDVFK----IPEKMTFEHAASLADSYSTA-QIVFSRHAKLK 160
                 G    S   +V      K     PE ++ E AA+      TA QI+     KL 
Sbjct: 91  YPHPYGGQGTLSQYLLVDPKKDKKSITRKPENISLEEAAAWPLVLGTAYQILEDLGQKLG 150

Query: 161 EKQTVLVTAAGGGLGLAAVDMATKIYKA-KVIGVCNSEDKTDLIRQKGA--WAALTFTNE 217
               VLV      +G  A+ +A   Y    V+G C+S    +L ++ GA  +      + 
Sbjct: 151 PDSKVLVLGGSTSVGRFAIQLAKNHYNIGTVVGTCSSRS-AELNKKLGADHFIDYDAHSG 209

Query: 218 KSLVNKVLE--VSGGKYANVVFEAVGGED 244
             L+  VLE     GK+ +++ + VGG D
Sbjct: 210 VKLLKPVLENVKGQGKF-DLILDCVGGYD 237

This group contains members identified in targeting of yeast membrane proteins ATPase. AST1 is a cytoplasmic protein associated with the periplasmic membrane in yeast, identified as a multicopy suppressor of pma1 mutants which cause temperature sensitive growth arrest due to the inability of ATPase to target to the cell surface. This family is homologous to the medium chain family of dehydrogenases and reductases. Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. Length = 352

>gnl|CDD|176230 cd08269, Zn_ADH9, Alcohol dehydrogenases of the MDR family

 Score = 59.3 bits (144), Expect = 4e-10
 Identities = 52/203 (25%), Positives = 85/203 (41%), Gaps = 20/203 (9%)

Query: 49  INSSDLLLYN--GSGDAKPTLPLVPGFEFSGTVIEVADTKSSSTEEDDEEDVLQVGDKVL 106
           +  SDL  +N        P  P  PG E  G V+ +                L VGD+V 
Sbjct: 31  VCGSDLPAFNQGRPWFVYPAEPGGPGHEGWGRVVALGPGVRG----------LAVGDRVA 80

Query: 107 ALNKELLHGFSDQCVVHTNDVFKIPEKMTFEHAASLADSYSTAQIVFSRHAKLKEKQTVL 166
            L+      F++  +   +    +P     +  A   +    A  VF R   ++  +TV 
Sbjct: 81  GLSG---GAFAEYDLADADHAVPLPSL--LDGQAFPGEPLGCALNVF-RRGWIRAGKTVA 134

Query: 167 VTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNKVLE 226
           V  AG  +GL  + +A      +VI +     +  L R+ GA   +   + +++V +V E
Sbjct: 135 VIGAGF-IGLLFLQLAAAAGARRVIAIDRRPARLALARELGA-TEVVTDDSEAIVERVRE 192

Query: 227 VSGGKYANVVFEAVGGEDKTDLI 249
           ++GG  A+VV EAVG +   DL 
Sbjct: 193 LTGGAGADVVIEAVGHQWPLDLA 215

The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. Length = 312

>gnl|CDD|188164 TIGR01751, crot-CoA-red, crotonyl-CoA reductase

 Score = 59.4 bits (144), Expect = 4e-10
 Identities = 53/252 (21%), Positives = 95/252 (37%), Gaps = 45/252 (17%)

Query: 63  AKPTLPL-VPGFEFSGTVIEVADTKS----------SSTEEDDEEDVLQVGDKVLALNKE 111
            K  LP  + G + SG V  V    +          S  + D      + GD +L+  + 
Sbjct: 72  GKLDLPFHIIGSDASGVVWRVGPGVTRWKVGDEVVASCLQVDLTAPDGRDGDPMLSSEQR 131

Query: 112 L------LHGFSDQCVVHTNDVFKIPEKMTFEHAASLADSYSTA--QIVFSRHAKLKEKQ 163
           +         F++  +V    +   P+ +T+E AA    + +TA  Q+V    A +K   
Sbjct: 132 IWGYETNFGSFAEFALVKDYQLMPKPKHLTWEEAACPGLTGATAYRQLVGWNPAAVKPGD 191

Query: 164 TVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNK 223
            VL+  A GGLG  A  +  +      + V +S +K +  R  GA A +   +       
Sbjct: 192 NVLIWGAAGGLGSYATQL-ARAGGGNPVAVVSSPEKAEYCRSLGAEAVIDRNDFGHW--- 247

Query: 224 VLEVSGGKYANVVFEAVGGEDKTDLIRQKGAWAALTFTNEKSLVNKVLEVSGGKYANVVF 283
                 G+  +   +A               W      + K    ++ E++GG+  ++VF
Sbjct: 248 ------GRLPDHNTQAP------------KEWT----KSFKRFGKRIRELTGGEDPDIVF 285

Query: 284 EAVGGEVFKAAM 295
           E  G   F  ++
Sbjct: 286 EHPGRATFPTSV 297

The enzyme modelled by This model is responsible for the conversion of crotonyl-CoA reductase to butyryl-CoA. In serine cycle methylotrophic bacteria this enzyme is involved in the process of acetyl-CoA to glyoxylate. In other bacteria the enzyme is used to produce butyrate for incorporation into polyketides such as tylosin from Streptomyces fradiae and coronatine from Pseudomonas syringae. Length = 398

>gnl|CDD|234026 TIGR02823, oxido_YhdH, putative quinone oxidoreductase, YhdH/YhfP family

 Score = 58.7 bits (143), Expect = 5e-10
 Identities = 54/203 (26%), Positives = 92/203 (45%), Gaps = 26/203 (12%)

Query: 49  INSSDLLLYNGSGDAKPTLPLVPGFEFSGTVIEVADTKSSSTEEDDEEDVLQVGDKVLAL 108
           +N  D L   G G    + P++PG + +GTV+   D +             + GD+V+  
Sbjct: 38  LNYKDALAITGKGGVVRSYPMIPGIDAAGTVVSSEDPR------------FREGDEVIVT 85

Query: 109 NKEL--LH--GFSDQCVVHTNDVFKIPEKMTFEHAASLADSYSTAQI-VF--SRHAKLKE 161
              L   H  G+S    V  + +  +PE ++   A +L  +  TA + V    R+    E
Sbjct: 86  GYGLGVSHDGGYSQYARVPADWLVPLPEGLSLREAMALGTAGFTAALSVMALERNGLTPE 145

Query: 162 KQTVLVTAAGGGLGLAAVDMATKI-YKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSL 220
              VLVT A GG+G  AV + +K+ Y  +V+      ++ D +++ GA + +    + S 
Sbjct: 146 DGPVLVTGATGGVGSLAVAILSKLGY--EVVASTGKAEEEDYLKELGA-SEVIDREDLSP 202

Query: 221 VNKVLEVSGGKYANVVFEAVGGE 243
             K LE    ++A  V + VGG 
Sbjct: 203 PGKPLE--KERWAGAV-DTVGGH 222

This model represents a subfamily of pfam00107 as defined by Pfam, a superfamily in which some members are zinc-binding medium-chain alcohol dehydrogenases while others are quinone oxidoreductases with no bound zinc. This subfamily includes proteins studied crystallographically for insight into function: YhdH from Escherichia coli and YhfP from Bacillus subtilis. Members bind NADPH or NAD, but not zinc [Unknown function, Enzymes of unknown specificity]. Length = 323

>gnl|CDD|176240 cd08279, Zn_ADH_class_III, Class III alcohol dehydrogenase

 Score = 59.1 bits (144), Expect = 6e-10
 Identities = 64/255 (25%), Positives = 97/255 (38%), Gaps = 70/255 (27%)

Query: 52  SDLLLYNGSGDAKPTLPLVPGFEFSGTVIEVADTKSSSTEEDDEEDVLQVGDKVL----- 106
           SDL +  G  D    LP V G E +G V EV    +           ++ GD V+     
Sbjct: 40  SDLHVVTG--DLPAPLPAVLGHEGAGVVEEVGPGVTG----------VKPGDHVVLSWIP 87

Query: 107 ----------------ALNKELLHG------------------------FSDQCVVHTND 126
                            L   +L G                        F++  VV    
Sbjct: 88  ACGTCRYCSRGQPNLCDLGAGILGGQLPDGTRRFTADGEPVGAMCGLGTFAEYTVVPEAS 147

Query: 127 VFKIPEKMTFEHAASLADSYST---AQIVFSRHAKLKEKQTVLVTAAGGGLGLAAVDMAT 183
           V KI + +  + AA L    +T   A  V +  A+++   TV V    GG+GL A+  A 
Sbjct: 148 VVKIDDDIPLDRAALLGCGVTTGVGA--VVNT-ARVRPGDTVAVIGC-GGVGLNAIQGAR 203

Query: 184 KIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNKVLEVSGGKYANVVFEAVGGE 243
               +++I V    +K +L R+ GA   +   +E   V  V +++ G+ A+  FEAVG  
Sbjct: 204 IAGASRIIAVDPVPEKLELARRFGATHTVN-ASEDDAVEAVRDLTDGRGADYAFEAVG-- 260

Query: 244 DKTDLIRQKGAWAAL 258
            +   IRQ  A A  
Sbjct: 261 -RAATIRQ--ALAMT 272

Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Length = 363

>gnl|CDD|176190 cd05288, PGDH, Prostaglandin dehydrogenases

 Score = 58.3 bits (142), Expect = 1e-09
 Identities = 48/193 (24%), Positives = 81/193 (41%), Gaps = 32/193 (16%)

Query: 62  DAKPTLPLVPGFE--FSGTVIEVADTKSSSTEEDDEEDVLQVGDKVLALNKELLHGFSDQ 119
           DAK   P V   E    G V EV +++S            +VGD V         G+ + 
Sbjct: 54  DAKSYSPPVQLGEPMRGGGVGEVVESRSPD---------FKVGDLVSGF-----LGWQEY 99

Query: 120 CVVH-TNDVFKIPEKMTFEHAASLADSYS-------TAQIVFSRHAKLKEKQTVLVTAAG 171
            VV   + + K+           L+           TA    +   K K  +TV+V+AA 
Sbjct: 100 AVVDGASGLRKLDP----SLGLPLSAYLGVLGMTGLTAYFGLTEIGKPKPGETVVVSAAA 155

Query: 172 GGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQK-GAWAALTFTNEKSLVNKVLEVSGG 230
           G +G     +A K+  A+V+G+  S++K   + ++ G  AA+ +      + + L+ +  
Sbjct: 156 GAVGSVVGQIA-KLLGARVVGIAGSDEKCRWLVEELGFDAAINYKTPD--LAEALKEAAP 212

Query: 231 KYANVVFEAVGGE 243
              +V F+ VGGE
Sbjct: 213 DGIDVYFDNVGGE 225

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. Length = 329

>gnl|CDD|176201 cd08239, THR_DH_like, L-threonine dehydrogenase (TDH)-like

 Score = 56.6 bits (137), Expect = 3e-09
 Identities = 51/218 (23%), Positives = 85/218 (38%), Gaps = 40/218 (18%)

Query: 52  SDLLLYNGSGDAKPTLPLVPGFEFSGTVIEVADTKSSSTEEDDEEDVLQVGDKV------ 105
           SDL  Y     A     ++PG E +G V+ V                 +VGD+V      
Sbjct: 39  SDLHYYYHGHRAPAYQGVIPGHEPAGVVVAVG----------PGVTHFRVGDRVMVYHYV 88

Query: 106 --------------LALNKELLHGFS------DQCVVHTNDVFKIPEKMTFEHAASLADS 145
                         L  +K   +G++      +  +V    +  +P+ ++F   A L   
Sbjct: 89  GCGACRNCRRGWMQLCTSKRAAYGWNRDGGHAEYMLVPEKTLIPLPDDLSFADGALLLCG 148

Query: 146 YSTAQIVFSRHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQ 205
             TA     R   +  + TVLV  A G +GL A+ +A  +    VIGV  S ++ +L + 
Sbjct: 149 IGTAYHALRR-VGVSGRDTVLVVGA-GPVGLGALMLARALGAEDVIGVDPSPERLELAKA 206

Query: 206 KGAWAALTFTNEKSLVNKVLEVSGGKYANVVFEAVGGE 243
            GA       + +  V ++ E++ G  A+V  E  G  
Sbjct: 207 LGADF--VINSGQDDVQEIRELTSGAGADVAIECSGNT 242

MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 339

>gnl|CDD|176188 cd05285, sorbitol_DH, Sorbitol dehydrogenase

 Score = 56.3 bits (137), Expect = 4e-09
 Identities = 58/231 (25%), Positives = 87/231 (37%), Gaps = 51/231 (22%)

Query: 47  TRINSSDLLLYN--GSGDAKPTLPLVPGFEFSGTVIEVADTKSSSTEEDDEEDV--LQVG 102
             I  SD+  Y     GD     P+V G E +GTV+ V               V  L+VG
Sbjct: 32  VGICGSDVHYYKHGRIGDFVVKEPMVLGHESAGTVVAVG------------SGVTHLKVG 79

Query: 103 DKVLALNKELLHGFSDQC--------------------------VVHTND-VFKIPEKMT 135
           D+V A+   +     + C                          V H  D   K+P+ ++
Sbjct: 80  DRV-AIEPGVPCRTCEFCKSGRYNLCPDMRFAATPPVDGTLCRYVNHPADFCHKLPDNVS 138

Query: 136 FEHAASLADSYSTAQIVFSRHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKA-KVIGVC 194
            E  A L +  S   +   R A ++   TVLV  AG  +GL       K + A KV+   
Sbjct: 139 LEEGA-LVEPLSVG-VHACRRAGVRPGDTVLVFGAGP-IGLLTA-AVAKAFGATKVVVTD 194

Query: 195 NSEDKTDLIRQKGAWAALTFTNEKS--LVNKVLEVSGGKYANVVFEAVGGE 243
               + +  ++ GA   +    E +     K+ E+ GGK  +VV E  G E
Sbjct: 195 IDPSRLEFAKELGATHTVNVRTEDTPESAEKIAELLGGKGPDVVIECTGAE 245

Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Length = 343

>gnl|CDD|176218 cd08256, Zn_ADH2, Alcohol dehydrogenases of the MDR family

 Score = 55.9 bits (135), Expect = 6e-09
 Identities = 65/247 (26%), Positives = 105/247 (42%), Gaps = 56/247 (22%)

Query: 49  INSSDLLLYNGS----GDA------KPTLPLVPGFEFSGTVIEVADTKSSSTEEDDEEDV 98
           I + D+  Y+G+    GD       KP  P++PG EF G V+E+         E  EE  
Sbjct: 36  ICAGDIKCYHGAPSFWGDENQPPYVKP--PMIPGHEFVGRVVELG--------EGAEERG 85

Query: 99  LQVGDKVLA-------------------LNKELLHGFSD-------QCVVHTND--VFKI 130
           ++VGD+V++                     K  L+GF +       + +    +  V K+
Sbjct: 86  VKVGDRVISEQIVPCWNCRFCNRGQYWMCQKHDLYGFQNNVNGGMAEYMRFPKEAIVHKV 145

Query: 131 PEKMTFEHAASLADSYSTAQIVFSRHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKAKV 190
           P+ +  E A  L +  + A     R A +K    V V A  G LGL  +  A      K+
Sbjct: 146 PDDIPPEDAI-LIEPLACALHAVDR-ANIKFDDVV-VLAGAGPLGLGMIGAARLKNPKKL 202

Query: 191 IGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNKVLEVSGGKYANVVFEAVGG----EDKT 246
           I +   +++  L R+ GA   L    E  +V K+ E++GG   ++  EA G     E   
Sbjct: 203 IVLDLKDERLALARKFGADVVLNPP-EVDVVEKIKELTGGYGCDIYIEATGHPSAVEQGL 261

Query: 247 DLIRQKG 253
           ++IR+ G
Sbjct: 262 NMIRKLG 268

This group has the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. Length = 350

>gnl|CDD|176217 cd08255, 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like, 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members

 Score = 55.4 bits (134), Expect = 6e-09
 Identities = 45/175 (25%), Positives = 70/175 (40%), Gaps = 26/175 (14%)

Query: 61  GDAKPTLPLVPGFEFSGTVIEVADTKSSSTEEDDEEDVLQVGDKVLALNKELLHGFSDQC 120
           G  K  LPL PG+   G V+EV    +            + GD+V           +++ 
Sbjct: 14  GTEKLPLPLPPGYSSVGRVVEVGSGVTG----------FKPGDRVFC-----FGPHAERV 58

Query: 121 VVHTNDVFKIPEKMTFEHAASLADSYSTA-QIVFSRHAKLKEKQTVLVTAAGGGL-GLAA 178
           VV  N +  +P+ +  E AA L    +TA   V  R A+ +  + V V   G GL GL A
Sbjct: 59  VVPANLLVPLPDGLPPERAA-LTALAATALNGV--RDAEPRLGERVAVV--GLGLVGLLA 113

Query: 179 VDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNK----VLEVSG 229
             +A      +V+GV     + +L    G    +       +  +    V+E SG
Sbjct: 114 AQLAKAAGAREVVGVDPDAARRELAEALGPADPVAADTADEIGGRGADVVIEASG 168

This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. Length = 277

>gnl|CDD|176244 cd08284, FDH_like_2, Glutathione-dependent formaldehyde dehydrogenase related proteins, child 2

 Score = 55.7 bits (135), Expect = 7e-09
 Identities = 60/230 (26%), Positives = 91/230 (39%), Gaps = 51/230 (22%)

Query: 52  SDLLLYNGSGDAKPTLPLVPGFEFSGTVIEVADTKSSSTEEDDEEDVLQVGDKVLA---- 107
           SDL +Y G      T   V G EF G V+EV            E   L+VGD+V++    
Sbjct: 40  SDLHIYRGHI--PSTPGFVLGHEFVGEVVEVGP----------EVRTLKVGDRVVSPFTI 87

Query: 108 ---------------LNKELLHGFSDQCVV-------------HTNDVFKIPEKMTFEHA 139
                            K  L G++                      + K+P+ ++ E A
Sbjct: 88  ACGECFYCRRGQSGRCAKGGLFGYA-GSPNLDGAQAEYVRVPFADGTLLKLPDGLSDEAA 146

Query: 140 ASLADSYSTAQIVFSRHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKA-KVIGVCNSED 198
             L D   T      R A+++   TV V   G  +GL AV ++ ++  A +V  V    +
Sbjct: 147 LLLGDILPTGYFGAKR-AQVRPGDTVAVIGCGP-VGLCAV-LSAQVLGAARVFAVDPVPE 203

Query: 199 KTDLIRQKGAWAALTFTNEKSLVNKVLEVSGGKYANVVFEAVGGEDKTDL 248
           + +     GA   + F +    V +V E + G+ A+VV EAVGG    DL
Sbjct: 204 RLERAAALGA-EPINFEDA-EPVERVREATEGRGADVVLEAVGGAAALDL 251

Glutathione-dependent formaldehyde dehydrogenases (FDHs) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. These tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Length = 344

>gnl|CDD|176231 cd08270, MDR4, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score = 55.1 bits (133), Expect = 9e-09
 Identities = 48/174 (27%), Positives = 79/174 (45%), Gaps = 24/174 (13%)

Query: 70  VPGFEFSGTVIEVADTKSSSTEEDDEEDVLQVGDKVLALNKELLHGFSDQCVVHTNDVFK 129
           VPG++ +G V   A   S             VG +V+ L       +++   V T  +  
Sbjct: 54  VPGWDAAGVVERAAADGSG----------PAVGARVVGLGAM--GAWAELVAVPTGWLAV 101

Query: 130 IPEKMTFEHAASLADSYSTAQIVFSRHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKAK 189
           +P+ ++F  AA+L  +  TA     R   L  ++ VLVT A GG+G  AV +A  +  A 
Sbjct: 102 LPDGVSFAQAATLPVAGVTALRALRRGGPLLGRR-VLVTGASGGVGRFAVQLA-ALAGAH 159

Query: 190 VIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNKVLEVSGGKYANVVFEAVGGE 243
           V+ V  S  + + +R+ GA           +V    E+SG    ++V ++VGG 
Sbjct: 160 VVAVVGSPARAEGLRELGA---------AEVVVGGSELSGAPV-DLVVDSVGGP 203

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 305

>gnl|CDD|223990 COG1062, AdhC, Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]

 Score = 54.9 bits (133), Expect = 1e-08
 Identities = 36/127 (28%), Positives = 58/127 (45%), Gaps = 2/127 (1%)

Query: 115 GFSDQCVVHTNDVFKIPEKMTFEHAASLADSYSTAQIVFSRHAKLKEKQTVLVTAAGGGL 174
            F++  VVH   + KI      E A  L    +T        AK++   TV V   GG +
Sbjct: 139 TFAEYTVVHEISLVKIDPDAPLEKACLLGCGVTTGIGAVVNTAKVEPGDTVAVFGLGG-V 197

Query: 175 GLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNKVLEVSGGKYAN 234
           GLAA+  A      ++I V  + +K +L ++ GA   +       +V  ++E++ G  A+
Sbjct: 198 GLAAIQGAKAAGAGRIIAVDINPEKLELAKKFGATHFVNPKEVDDVVEAIVELTDGG-AD 256

Query: 235 VVFEAVG 241
             FE VG
Sbjct: 257 YAFECVG 263

Length = 366

>gnl|CDD|176252 cd08292, ETR_like_2, 2-enoyl thioester reductase (ETR) like proteins, child 2

 Score = 54.6 bits (132), Expect = 1e-08
 Identities = 52/214 (24%), Positives = 95/214 (44%), Gaps = 17/214 (7%)

Query: 37  SGTIIEKKMMTRINSSDLLLYNGSGDAKPTLPLVPGFEFSGTVIEVADTKSSSTEEDDEE 96
           +G ++ +  ++ I++ DL    G+   KP LP + G E  G V  V +            
Sbjct: 28  AGEVLVRTTLSPIHNHDLWTIRGTYGYKPELPAIGGSEAVGVVDAVGEGV---------- 77

Query: 97  DVLQVGDKVLALNKELLHG-FSDQCVVHTNDVFKIPEKMTFEHAASLADSYSTAQIVFSR 155
             LQVG +V       +HG +++  V   + +  +P+ ++ E AA L     +A ++   
Sbjct: 78  KGLQVGQRVAVAP---VHGTWAEYFVAPADGLVPLPDGISDEVAAQLIAMPLSA-LMLLD 133

Query: 156 HAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFT 215
              +K  Q ++  AAGG +G   V M        VI +   +     +R  G    ++ T
Sbjct: 134 FLGVKPGQWLIQNAAGGAVG-KLVAMLAAARGINVINLVRRDAGVAELRALGIGPVVS-T 191

Query: 216 NEKSLVNKVLEVSGGKYANVVFEAVGGEDKTDLI 249
            +    +KV E +GG   +V  ++VGG+   +L+
Sbjct: 192 EQPGWQDKVREAAGGAPISVALDSVGGKLAGELL 225

2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains, at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Candida tropicalis enoyl thioester reductase (Etr1p) catalyzes the NADPH-dependent reduction of trans-2-enoyl thioesters in mitochondrial fatty acid synthesis. Etr1p forms homodimers, with each subunit containing a nucleotide-binding Rossmann fold domain and a catalytic domain. Length = 324

>gnl|CDD|176197 cd08235, iditol_2_DH_like, L-iditol 2-dehydrogenase

 Score = 54.1 bits (131), Expect = 2e-08
 Identities = 61/228 (26%), Positives = 89/228 (39%), Gaps = 55/228 (24%)

Query: 49  INSSDLLLYNGSGDAKPTLPLVPGFEFSGTVIEVADTKSSSTEEDDEEDVLQVGDKVLAL 108
           I  +D+    G G      P + G E +G ++EV D               +VGD+V   
Sbjct: 36  ICGTDVKKIRG-GHTDLKPPRILGHEIAGEIVEVGD----------GVTGFKVGDRVFVA 84

Query: 109 NK-------ELLHGFSDQC------------------------VVHTNDVFKIPEKMTFE 137
                      L G  + C                        V     V K+P+ ++FE
Sbjct: 85  PHVPCGECHYCLRGNENMCPNYKKFGNLYDGGFAEYVRVPAWAVKRGG-VLKLPDNVSFE 143

Query: 138 HAASLADSYST---AQIVFSRHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKA-KVIGV 193
            AA L +  +    AQ    R A +K   TVLV  A G +GL    +A K   A KVI  
Sbjct: 144 EAA-LVEPLACCINAQ----RKAGIKPGDTVLVIGA-GPIGLLHAMLA-KASGARKVIVS 196

Query: 194 CNSEDKTDLIRQKGAWAALTFTNEKSLVNKVLEVSGGKYANVVFEAVG 241
             +E + +  ++ GA   +    E  LV KV E++ G+ A+VV  A G
Sbjct: 197 DLNEFRLEFAKKLGADYTIDAAEE-DLVEKVRELTDGRGADVVIVATG 243

Putative L-iditol 2-dehydrogenase based on annotation of some members in this subgroup. L-iditol 2-dehydrogenase catalyzes the NAD+-dependent conversion of L-iditol to L-sorbose in fructose and mannose metabolism. This enzyme is related to sorbitol dehydrogenase, alcohol dehydrogenase, and other medium chain dehydrogenase/reductases. The zinc-dependent alcohol dehydrogenase (ADH-Zn)-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) to highlight its broad range of activities and to distinguish from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal GroES-like catalytic domain. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 343

>gnl|CDD|215721 pfam00107, ADH_zinc_N, Zinc-binding dehydrogenase

 Score = 51.5 bits (124), Expect = 2e-08
 Identities = 27/72 (37%), Positives = 44/72 (61%), Gaps = 1/72 (1%)

Query: 173 GLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNKVLEVSGGKY 232
           G+GLAAV +A  +  A+VI V  SE+K +L ++ GA   + + +E   V +V E++GG+ 
Sbjct: 1   GVGLAAVQLAKALGAARVIAVDRSEEKLELAKELGADHVINYRDED-FVERVRELTGGRG 59

Query: 233 ANVVFEAVGGED 244
            +VV + VG   
Sbjct: 60  VDVVIDCVGAPA 71

Length = 131

>gnl|CDD|176225 cd08264, Zn_ADH_like2, Alcohol dehydrogenases of the MDR family

 Score = 53.9 bits (130), Expect = 3e-08
 Identities = 63/232 (27%), Positives = 100/232 (43%), Gaps = 50/232 (21%)

Query: 37  SGTIIEKKMMTRINSSDLLLYNGSGDAKPTLPLVPGFEFSGTVIEVADTKSSSTEEDDEE 96
            G ++ +  M  +N  D  + N +   KP +P +PG EF+G V EV D            
Sbjct: 26  PGEVLIRVKMAGVNPVDYNVIN-AVKVKP-MPHIPGAEFAGVVEEVGDHVKG-------- 75

Query: 97  DVLQVGDKVLALNKELLHGFSDQC--------------------------VVHTNDVFKI 130
             ++ GD+V+  N+ +  G  D C                          VV   ++FKI
Sbjct: 76  --VKKGDRVVVYNR-VFDGTCDMCLSGNEMLCRNGGIIGVVSNGGYAEYIVVPEKNLFKI 132

Query: 131 PEKMTFEHAASLADSYSTAQIVFSRHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKAKV 190
           P+ ++ E AASL  +  TA       A L   +TV+V  A G  G+ AV +A K+  A+V
Sbjct: 133 PDSISDELAASLPVAALTAYHALKT-AGLGPGETVVVFGASGNTGIFAVQLA-KMMGAEV 190

Query: 191 IGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNKVLEVSGGKYANVVFEAVGG 242
           I V   +     +++ GA   + +     +  KV E    K A+VV  ++G 
Sbjct: 191 IAVSRKDW----LKEFGADEVVDYDE---VEEKVKE--ITKMADVVINSLGS 233

This group resembles the zinc-dependent alcohol dehydrogenases of the medium chain dehydrogenase family. However, this subgroup does not contain the characteristic catalytic zinc site. Also, it contains an atypical structural zinc-binding pattern: DxxCxxCxxxxxxxC. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 325

>gnl|CDD|176243 cd08283, FDH_like_1, Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1

 Score = 54.1 bits (131), Expect = 3e-08
 Identities = 32/117 (27%), Positives = 54/117 (46%), Gaps = 4/117 (3%)

Query: 128 FKIPEKMTFEHAASLADSYSTA-QIVFSRHAKLKEKQTVLVTAAGGGLGLAAVDMATKIY 186
           FKIP+ ++ E A  L+D   T         A++K   TV V   G  +GL A   A  + 
Sbjct: 152 FKIPDDLSDEKALFLSDILPTGYHAA--ELAEVKPGDTVAVWGCGP-VGLFAARSAKLLG 208

Query: 187 KAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNKVLEVSGGKYANVVFEAVGGE 243
             +VI +    ++ ++ R       + F     +V  + E++GG+  +V  +AVG E
Sbjct: 209 AERVIAIDRVPERLEMARSHLGAETINFEEVDDVVEALRELTGGRGPDVCIDAVGME 265

Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Length = 386

>gnl|CDD|176237 cd08276, MDR7, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score = 53.3 bits (129), Expect = 4e-08
 Identities = 54/212 (25%), Positives = 88/212 (41%), Gaps = 35/212 (16%)

Query: 53  DLLLYNGSGDAKPTLPLVPGFEFSGTVIEVADTKSSSTEEDDEEDV--LQVGDKVLAL-- 108
           DLL+ NG        PL+P  + +G V+ V             E V   +VGD+V+    
Sbjct: 43  DLLILNGRYPPPVKDPLIPLSDGAGEVVAV------------GEGVTRFKVGDRVVPTFF 90

Query: 109 ---------NKEL-------LHGFSDQCVV-HTNDVFKIPEKMTFEHAASLADSYSTAQI 151
                     ++        + G   + VV     + + P+ ++FE AA+L  +  TA  
Sbjct: 91  PNWLDGPPTAEDEASALGGPIDGVLAEYVVLPEEGLVRAPDHLSFEEAATLPCAGLTAWN 150

Query: 152 VFSRHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAA 211
                  LK   TVLV   GG   L A+  A K   A+VI   +S++K +  +  GA   
Sbjct: 151 ALFGLGPLKPGDTVLVQGTGGV-SLFALQFA-KAAGARVIATSSSDEKLERAKALGADHV 208

Query: 212 LTFTNEKSLVNKVLEVSGGKYANVVFEAVGGE 243
           + +        +VL+++GG+  + V E  G  
Sbjct: 209 INYRTTPDWGEEVLKLTGGRGVDHVVEVGGPG 240

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 336

>gnl|CDD|225041 COG2130, COG2130, Putative NADP-dependent oxidoreductases [General function prediction only]

 Score = 51.5 bits (124), Expect = 2e-07
 Identities = 38/184 (20%), Positives = 69/184 (37%), Gaps = 29/184 (15%)

Query: 68  PLVPGFEFSGTVIEVADTKSSSTEEDDEEDVLQVGDKVLALNKELLHGFSDQCVVHTNDV 127
           P+  G    G  +                   Q GD V+ +      G+ +  +     +
Sbjct: 68  PVELGEVMVGGTVAKV--------VASNHPGFQPGDIVVGV-----SGWQEYAISDGEGL 114

Query: 128 FKIPEKMTFEHAASLADSYS-------TAQIVFSRHAKLKEKQTVLVTAAGGGLGLAAVD 180
            K+         A L+           TA        + K  +TV+V+AA G +G     
Sbjct: 115 RKLDP-----SPAPLSAYLGVLGMPGLTAYFGLLDIGQPKAGETVVVSAAAGAVGSVVGQ 169

Query: 181 MATKIYKAKVIGVCNSEDKTDLIRQKGAW-AALTFTNEKSLVNKVLEVSGGKYANVVFEA 239
           +A K+   +V+G+    +K D + ++  + A + +  E     + L+ +  K  +V FE 
Sbjct: 170 IA-KLKGCRVVGIAGGAEKCDFLTEELGFDAGIDYKAED--FAQALKEACPKGIDVYFEN 226

Query: 240 VGGE 243
           VGGE
Sbjct: 227 VGGE 230

Length = 340

>gnl|CDD|176248 cd08288, MDR_yhdh, Yhdh putative quinone oxidoreductases

 Score = 51.0 bits (123), Expect = 2e-07
 Identities = 48/169 (28%), Positives = 77/169 (45%), Gaps = 24/169 (14%)

Query: 49  INSSDLLLYNGSGDAKPTLPLVPGFEFSGTVIEVADTKSSSTEEDDEEDVLQVGDKVLAL 108
           +N  D L   G G    T PLVPG + +GTV+E     SSS          + GD+V+ L
Sbjct: 39  LNYKDGLAITGKGGIVRTFPLVPGIDLAGTVVE-----SSSPR-------FKPGDRVV-L 85

Query: 109 N----KELLHG-FSDQCVVHTNDVFKIPEKMTFEHAASLADSYSTAQI-VFS--RHAKLK 160
                 E   G ++ +  V  + +  +PE ++   A ++  +  TA + V +   H    
Sbjct: 86  TGWGVGERHWGGYAQRARVKADWLVPLPEGLSARQAMAIGTAGFTAMLCVMALEDHGVTP 145

Query: 161 EKQTVLVTAAGGGLGLAAVDMATKI-YKAKVIGVCNSEDKTDLIRQKGA 208
               VLVT A GG+G  AV +  ++ Y  +V+      ++ D +R  GA
Sbjct: 146 GDGPVLVTGAAGGVGSVAVALLARLGY--EVVASTGRPEEADYLRSLGA 192

Yhdh putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 324

>gnl|CDD|176249 cd08289, MDR_yhfp_like, Yhfp putative quinone oxidoreductases

 Score = 51.2 bits (123), Expect = 2e-07
 Identities = 42/149 (28%), Positives = 70/149 (46%), Gaps = 22/149 (14%)

Query: 68  PLVPGFEFSGTVIEVADTKSSSTEEDDEEDVLQVGDKVLALNKEL--LH--GFSDQCVVH 123
           P +PG + +GTV+E  D +             + GD+V+  + +L   H  G+S+   V 
Sbjct: 58  PFIPGIDLAGTVVESNDPR------------FKPGDEVIVTSYDLGVSHHGGYSEYARVP 105

Query: 124 TNDVFKIPEKMTFEHAASLADSYSTAQIVFSR---HAKLKEKQTVLVTAAGGGLGLAAVD 180
              V  +P+ +T + A  L  +  TA +   R   +    E+  VLVT A GG+G  AV 
Sbjct: 106 AEWVVPLPKGLTLKEAMILGTAGFTAALSIHRLEENGLTPEQGPVLVTGATGGVGSLAVS 165

Query: 181 MATKI-YKAKVIGVCNSEDKTDLIRQKGA 208
           +  K+ Y  +V+      D  D +++ GA
Sbjct: 166 ILAKLGY--EVVASTGKADAADYLKKLGA 192

yhfp putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 326

>gnl|CDD|176208 cd08246, crotonyl_coA_red, crotonyl-CoA reductase

 Score = 50.5 bits (121), Expect = 4e-07
 Identities = 35/151 (23%), Positives = 61/151 (40%), Gaps = 25/151 (16%)

Query: 115 GFSDQCVVHTNDVFKIPEKMTFEHAASLADSYSTA--QIVFSRHAKLKEKQTVLVTAAGG 172
            F+   +V    +   P+ +++E AA+     +TA   +       +K    VL+  A G
Sbjct: 145 SFAQFALVQATQLMPKPKHLSWEEAAAYMLVGATAYRMLFGWNPNTVKPGDNVLIWGASG 204

Query: 173 GLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGA-----------WAALTFTNE---- 217
           GLG  A+ +A +   A  + V +SE+K +  R  GA           W  L   N     
Sbjct: 205 GLGSMAIQLA-RAAGANPVAVVSSEEKAEYCRALGAEGVINRRDFDHWGVLPDVNSEAYT 263

Query: 218 ------KSLVNKVLEVSGGKYA-NVVFEAVG 241
                 +     + ++ GG+   ++VFE  G
Sbjct: 264 AWTKEARRFGKAIWDILGGREDPDIVFEHPG 294

Crotonyl-CoA reductase, a member of the medium chain dehydrogenase/reductase family, catalyzes the NADPH-dependent conversion of crotonyl-CoA to butyryl-CoA, a step in (2S)-methylmalonyl-CoA production for straight-chain fatty acid biosynthesis. Like enoyl reductase, another enzyme in fatty acid synthesis, crotonyl-CoA reductase is a member of the zinc-dependent alcohol dehydrogenase-like medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. Length = 393

>gnl|CDD|176241 cd08281, liver_ADH_like1, Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase)

 Score = 50.5 bits (121), Expect = 4e-07
 Identities = 61/237 (25%), Positives = 94/237 (39%), Gaps = 63/237 (26%)

Query: 52  SDLLLYNGSGDAKP-TLPLVPGFEFSGTVIEVADTKSSSTEEDDEEDVLQVGDKVLAL-- 108
           SDL + NG    +P  LP+  G E +G V+EV +     T+       L+VGD V+ +  
Sbjct: 48  SDLSVINGD---RPRPLPMALGHEAAGVVVEVGE---GVTD-------LEVGDHVVLVFV 94

Query: 109 -------------------------NKELLHG-------------------FSDQCVVHT 124
                                       LL G                   F++  VV  
Sbjct: 95  PSCGHCRPCAEGRPALCEPGAAANGAGTLLSGGRRLRLRGGEINHHLGVSAFAEYAVVSR 154

Query: 125 NDVFKIPEKMTFEHAASLADSYSTAQIVFSRHAKLKEKQTVLVTAAGGGLGLAAVDMATK 184
             V KI + +  E AA    +  T        A ++  Q+V V   GG +GL+A+  A  
Sbjct: 155 RSVVKIDKDVPLEIAALFGCAVLTGVGAVVNTAGVRPGQSVAVVGLGG-VGLSALLGAVA 213

Query: 185 IYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNKVLEVSGGKYANVVFEAVG 241
              ++V+ V  +EDK  L R+ GA A +   +  + V +V E++GG   +  FE  G
Sbjct: 214 AGASQVVAVDLNEDKLALARELGATATVNAGDP-NAVEQVRELTGGG-VDYAFEMAG 268

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to the corresponding carboxylic acid and alcohol. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 371

>gnl|CDD|176186 cd05283, CAD1, Cinnamyl alcohol dehydrogenases (CAD)

 Score = 49.4 bits (119), Expect = 8e-07
 Identities = 54/200 (27%), Positives = 70/200 (35%), Gaps = 67/200 (33%)

Query: 52  SDLL-LYNGSGDAKPTLPLVPGFEFSGTVIEVADTKSSSTEEDDEEDV--LQVGDKV--- 105
           SDL  L N  G  K   PLVPG E  G V+ V               V   +VGD+V   
Sbjct: 39  SDLHTLRNEWGPTK--YPLVPGHEIVGIVVAV------------GSKVTKFKVGDRVGVG 84

Query: 106 ------------------LALNKELLH------------GFSDQCVVHTNDVFKIPEKMT 135
                                   + +            G++D  VV    VFKIPE + 
Sbjct: 85  CQVDSCGTCEQCKSGEEQYCPKGVVTYNGKYPDGTITQGGYADHIVVDERFVFKIPEGLD 144

Query: 136 FEHAASLADSYSTAQI-VFS--RHAKLKEKQTVLVTAAG-GGLGLAAVDMATKIYKA--- 188
              AA L      A I V+S  +   +   + V V   G GGLG     +A K  KA   
Sbjct: 145 SAAAAPL----LCAGITVYSPLKRNGVGPGKRVGV--VGIGGLG----HLAVKFAKALGA 194

Query: 189 KVIGVCNSEDKTDLIRQKGA 208
           +V     S  K +   + GA
Sbjct: 195 EVTAFSRSPSKKEDALKLGA 214

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 337

>gnl|CDD|176202 cd08240, 6_hydroxyhexanoate_dh_like, 6-hydroxyhexanoate dehydrogenase

 Score = 47.6 bits (114), Expect = 3e-06
 Identities = 49/200 (24%), Positives = 78/200 (39%), Gaps = 37/200 (18%)

Query: 62  DAKPTLPLVPGFEFSGTVIEVADTKSSSTEEDDEEDVLQVGDKVLAL------------- 108
           D    LPLV G E  G V+ V           D  DV +VGDKVL               
Sbjct: 61  DRGVKLPLVLGHEIVGEVVAVGP---------DAADV-KVGDKVLVYPWIGCGECPVCLA 110

Query: 109 --------NKELL----HGFSDQCVVHTNDVFKIPEKMTFEHAASLADSYSTAQIVFSRH 156
                    + L      G+++  +V  +     P  +    AA+LA S  TA     + 
Sbjct: 111 GDENLCAKGRALGIFQDGGYAEYVIVPHSRYLVDPGGLDPALAATLACSGLTAYSAVKKL 170

Query: 157 AKLKEKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTN 216
             L   + V++  AGG LGL A+ +   +  A +I V   E K +  +  GA   +   +
Sbjct: 171 MPLVADEPVVIIGAGG-LGLMALALLKALGPANIIVVDIDEAKLEAAKAAGADVVVN-GS 228

Query: 217 EKSLVNKVLEVSGGKYANVV 236
           +     ++++ +GG    V+
Sbjct: 229 DPDAAKRIIKAAGGGVDAVI 248

6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains, at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 350

>gnl|CDD|219758 pfam08240, ADH_N, Alcohol dehydrogenase GroES-like domain

 Score = 44.5 bits (106), Expect = 3e-06
 Identities = 13/42 (30%), Positives = 21/42 (50%), Gaps = 1/42 (2%)

Query: 1  VRIDIQCCALNSSDLLLYNGSGDAKPTLPLVPGFEFSGTIIE 42
          V + ++   +  SDL +Y G       LPL+ G E +G + E
Sbjct: 4  VLVRVKAAGICGSDLHIYRG-EPPPVKLPLILGHEGAGIVEE 44

This is the catalytic domain of alcohol dehydrogenases. Many of them contain an inserted zinc binding domain. This domain has a GroES-like structure. Length = 108

>gnl|CDD|176245 cd08285, NADP_ADH, NADP(H)-dependent alcohol dehydrogenases

 Score = 47.2 bits (113), Expect = 4e-06
 Identities = 39/129 (30%), Positives = 63/129 (48%), Gaps = 11/129 (8%)

Query: 122 VHTND----VFKIPEKMTFEHAASLADSYSTAQIVFS--RHAKLKEKQTVLVTAAGGGLG 175
            H ND    +  +P+ +T E A  L D  ST    F     A +K   TV V   G  +G
Sbjct: 124 FHVNDADANLAPLPDGLTDEQAVMLPDMMSTG---FHGAELANIKLGDTVAVFGIGP-VG 179

Query: 176 LAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNKVLEVSGGKYANV 235
           L AV  A      ++I V +  ++ +L ++ GA   + + N   +V ++L+++GGK  + 
Sbjct: 180 LMAVAGARLRGAGRIIAVGSRPNRVELAKEYGATDIVDYKN-GDVVEQILKLTGGKGVDA 238

Query: 236 VFEAVGGED 244
           V  A GG+D
Sbjct: 239 VIIAGGGQD 247

This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Length = 351

>gnl|CDD|219758 pfam08240, ADH_N, Alcohol dehydrogenase GroES-like domain

 Score = 43.8 bits (104), Expect = 6e-06
 Identities = 20/59 (33%), Positives = 26/59 (44%), Gaps = 11/59 (18%)

Query: 49  INSSDLLLYNGSGDAKPTLPLVPGFEFSGTVIEVADTKSSSTEEDDEEDVLQVGDKVLA 107
           I  SDL +Y G       LPL+ G E +G V EV                L+VGD+V+ 
Sbjct: 13  ICGSDLHIYRG-EPPPVKLPLILGHEGAGIVEEV----------GPGVTGLKVGDRVVV 60

This is the catalytic domain of alcohol dehydrogenases. Many of them contain an inserted zinc binding domain. This domain has a GroES-like structure. Length = 108

>gnl|CDD|176246 cd08286, FDH_like_ADH2, formaldehyde dehydrogenase (FDH)-like

 Score = 46.9 bits (112), Expect = 6e-06
 Identities = 35/118 (29%), Positives = 61/118 (51%), Gaps = 2/118 (1%)

Query: 124 TNDVFKIPEKMTFEHAASLADSYSTAQIVFSRHAKLKEKQTVLVTAAGGGLGLAAVDMAT 183
            N ++K+PE +  E A  L+D   T       + K+K   TV +  A G +GLAA+  A 
Sbjct: 129 DNSLYKLPEGVDEEAAVMLSDILPTGYECGVLNGKVKPGDTVAIVGA-GPVGLAALLTAQ 187

Query: 184 KIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNKVLEVSGGKYANVVFEAVG 241
               +K+I V   +++ ++ ++ GA   +        + +VLE++ G+  +VV EAVG
Sbjct: 188 LYSPSKIIMVDLDDNRLEVAKKLGATHTVNSAKG-DAIEQVLELTDGRGVDVVIEAVG 244

This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Length = 345

>gnl|CDD|131872 TIGR02825, B4_12hDH, leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase

 Score = 45.8 bits (108), Expect = 1e-05
 Identities = 33/123 (26%), Positives = 55/123 (44%), Gaps = 2/123 (1%)

Query: 160 KEKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKS 219
           K  +TV+V AA G +G + V    K+   KV+G   S++K   +++ G   A  +   KS
Sbjct: 137 KGGETVMVNAAAGAVG-SVVGQIAKLKGCKVVGAAGSDEKVAYLKKLGFDVAFNYKTVKS 195

Query: 220 LVNKVLEVSGGKYANVVFEAVGGEDKTDLIRQKGAWAALTFTNEKSLVNKVLEVSGGKYA 279
           L   + + S   Y +  F+ VGGE    +I Q   +  +      S  N+   +  G   
Sbjct: 196 LEETLKKASPDGY-DCYFDNVGGEFSNTVIGQMKKFGRIAICGAISTYNRTGPLPPGPPP 254

Query: 280 NVV 282
            +V
Sbjct: 255 EIV 257

Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase. Length = 325

>gnl|CDD|129775 TIGR00692, tdh, L-threonine 3-dehydrogenase

 Score = 44.8 bits (106), Expect = 2e-05
 Identities = 53/228 (23%), Positives = 92/228 (40%), Gaps = 36/228 (15%)

Query: 38  GTIIEKKMMTRINSSDLLLYNGSGDAKPTL--PLVPGFEFSGTVIEVADTKSSSTEEDDE 95
           G ++ K + T I  +D+ +YN    A+  +  P V G E +G V+ +             
Sbjct: 24  GEVLIKVLATSICGTDVHIYNWDEWAQSRIKPPQVVGHEVAGEVVGIGPGVEG------- 76

Query: 96  EDVLQVGDKVLALN-------KELLHGFSDQCV------VHTNDVF----KIPEKMTFEH 138
              ++VGD V                G    C       V T+  F     +P +  +++
Sbjct: 77  ---IKVGDYVSVETHIVCGKCYACRRGQYHVCQNTKIFGVDTDGCFAEYAVVPAQNIWKN 133

Query: 139 AASLADSYSTAQIVFSR--HAKLKEK---QTVLVTAAGGGLGLAAVDMATKIYKAKVIGV 193
             S+   Y+T Q       H  L      ++VLVT A G +GL A+ +A       VI  
Sbjct: 134 PKSIPPEYATIQEPLGNAVHTVLAGPISGKSVLVTGA-GPIGLMAIAVAKASGAYPVIVS 192

Query: 194 CNSEDKTDLIRQKGAWAALTFTNEKSLVNKVLEVSGGKYANVVFEAVG 241
             +E + +L ++ GA   +    E  +V +V +++ G+  +V  E  G
Sbjct: 193 DPNEYRLELAKKMGATYVVNPFKE-DVVKEVADLTDGEGVDVFLEMSG 239

This protein is a tetrameric, zinc-binding, NAD-dependent enzyme of threonine catabolism. Closely related proteins include sorbitol dehydrogenase, xylitol dehydrogenase, and benzyl alcohol dehydrogenase. Eukaryotic examples of this enzyme have been demonstrated experimentally but do not appear in database search results.E. coli His-90 modulates substrate specificity and is believed part of the active site [Energy metabolism, Amino acids and amines]. Length = 340

>gnl|CDD|176223 cd08262, Zn_ADH8, Alcohol dehydrogenases of the MDR family

 Score = 43.8 bits (104), Expect = 4e-05
 Identities = 43/203 (21%), Positives = 74/203 (36%), Gaps = 35/203 (17%)

Query: 59  GSGDAKPTLPLVPGFEFSGTVIEVADTKSSSTEEDDEEDVLQVGDKVLAL---------- 108
           G         +V G EF G V++        TE       L+VG +V +L          
Sbjct: 55  GPSLMDLGADIVLGHEFCGEVVDYG----PGTERK-----LKVGTRVTSLPLLLCGQGAS 105

Query: 109 -----NKELLHGFSDQCVVHTNDVFKIPEKMTFEHAA---SLADSYSTAQIVFSRHAKLK 160
                + E   G+++  ++    + ++P+ ++ E AA    LA           R A+L 
Sbjct: 106 CGIGLSPEAPGGYAEYMLLSEALLLRVPDGLSMEDAALTEPLAVGLHAV-----RRARLT 160

Query: 161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEK-- 218
             +  LV    G +GLA +          ++    S ++  L    GA   +    +   
Sbjct: 161 PGEVALVIGC-GPIGLAVIAALKARGVGPIVASDFSPERRALALAMGADIVVDPAADSPF 219

Query: 219 SLVNKVLEVSGGKYANVVFEAVG 241
           +     L  +GG    V+FE VG
Sbjct: 220 AAWAAELARAGGPKPAVIFECVG 242

The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 341

>gnl|CDD|176226 cd08265, Zn_ADH3, Alcohol dehydrogenases of the MDR family

 Score = 43.7 bits (103), Expect = 6e-05
 Identities = 52/207 (25%), Positives = 84/207 (40%), Gaps = 31/207 (14%)

Query: 67  LPLVPGFEFSGTVIEVADT--KSSSTEEDDEEDVLQVGD---------------KVLALN 109
            P+V G EFSG V +           +    E+++  G                K L  +
Sbjct: 87  FPVVIGHEFSGVVEKTGKNVKNFEKGDPVTAEEMMWCGMCRACRSGSPNHCKNLKELGFS 146

Query: 110 KELLHGFSDQCVVHTNDVFKI-------PEKMTFEHAASLADSYSTA-QIVFSRHAKLKE 161
            +    F++   V+    ++I        E   FE A +L +  S A   +F R    + 
Sbjct: 147 AD--GAFAEYIAVNARYAWEINELREIYSEDKAFE-AGALVEPTSVAYNGLFIRGGGFRP 203

Query: 162 KQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEK--S 219
              V+V  AG  +GLAA+ +A     +KVI    SE++ +L ++ GA      T  +   
Sbjct: 204 GAYVVVYGAGP-IGLAAIALAKAAGASKVIAFEISEERRNLAKEMGADYVFNPTKMRDCL 262

Query: 220 LVNKVLEVSGGKYANVVFEAVGGEDKT 246
              KV+EV+ G  A++  EA G    T
Sbjct: 263 SGEKVMEVTKGWGADIQVEAAGAPPAT 289

This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Other MDR members have only a catalytic zinc, and some contain no coordinated zinc. Length = 384

>gnl|CDD|176182 cd05279, Zn_ADH1, Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases

 Score = 43.2 bits (102), Expect = 8e-05
 Identities = 37/145 (25%), Positives = 62/145 (42%), Gaps = 10/145 (6%)

Query: 116 FSDQCVVHTNDVFKIPEKMTFEHAASLADSYSTAQIVFSRHAKLKEKQTVLVTAAGGGLG 175
           F++  VV    + KI      E    +   +ST        AK+    T  V   GG +G
Sbjct: 138 FAEYTVVSEISLAKIDPDAPLEKVCLIGCGFSTGYGAAVNTAKVTPGSTCAVFGLGG-VG 196

Query: 176 LAAVDMATKIYKA-KVIGVCNSEDKTDLIRQKGAWAALT-FTNEKSLVNKVLEVSGGKYA 233
           L+ + M  K   A ++I V  ++DK +  +Q GA   +     +K +V  + E++ G   
Sbjct: 197 LSVI-MGCKAAGASRIIAVDINKDKFEKAKQLGATECINPRDQDKPIVEVLTEMTDGG-V 254

Query: 234 NVVFEAVGGEDKTDLIRQKGAWAAL 258
           +  FE +G     D ++Q  A  A 
Sbjct: 255 DYAFEVIG---SADTLKQ--ALDAT 274

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the substrate binding pocket and therefore in substrate specificity. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine (His-51), the ribose of NAD, a serine (Ser-48), then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Length = 365

>gnl|CDD|181842 PRK09422, PRK09422, ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional

 Score = 43.1 bits (102), Expect = 9e-05
 Identities = 35/126 (27%), Positives = 63/126 (50%), Gaps = 10/126 (7%)

Query: 115 GFSDQCVVHTNDVFKIPEKMTFEHAASLA----DSYSTAQIVFSRHAKLKEKQTVLVTAA 170
           G ++QC+V  +   K+PE +    A+S+      +Y   ++     + +K  Q + +  A
Sbjct: 117 GMAEQCIVTADYAVKVPEGLDPAQASSITCAGVTTYKAIKV-----SGIKPGQWIAIYGA 171

Query: 171 GGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNKVLEVSGG 230
           GG LG  A+  A  ++ AKVI V  ++DK  L ++ GA   +     + +   + E +GG
Sbjct: 172 GG-LGNLALQYAKNVFNAKVIAVDINDDKLALAKEVGADLTINSKRVEDVAKIIQEKTGG 230

Query: 231 KYANVV 236
            +A VV
Sbjct: 231 AHAAVV 236

Length = 338

>gnl|CDD|166155 PLN02514, PLN02514, cinnamyl-alcohol dehydrogenase

 Score = 42.1 bits (99), Expect = 2e-04
 Identities = 48/145 (33%), Positives = 58/145 (40%), Gaps = 30/145 (20%)

Query: 68  PLVPGFEFSGTVIEVADTKSSSTEEDD----------------EEDVLQVGDK------- 104
           P+VPG E  G V+EV    S  T  D                 + D+ Q  +K       
Sbjct: 64  PMVPGHEVVGEVVEVGSDVSKFTVGDIVGVGVIVGCCGECSPCKSDLEQYCNKRIWSYND 123

Query: 105 VLALNKELLHGFSDQCVVHTNDVFKIPEKMTFEHAASLADSYSTAQIVFSRHAKLKEKQT 164
           V    K    GF+   VV    V KIPE M  E AA L  +  T   V+S  +    KQ+
Sbjct: 124 VYTDGKPTQGGFASAMVVDQKFVVKIPEGMAPEQAAPLLCAGVT---VYSPLSHFGLKQS 180

Query: 165 VLVTAAGGGLGLAAV-DMATKIYKA 188
            L    GG LGL  V  M  KI KA
Sbjct: 181 GL---RGGILGLGGVGHMGVKIAKA 202

Length = 357

>gnl|CDD|176214 cd08252, AL_MDR, Arginate lyase and other MDR family members

 Score = 41.7 bits (99), Expect = 2e-04
 Identities = 40/167 (23%), Positives = 66/167 (39%), Gaps = 40/167 (23%)

Query: 60  SGDAKPTLPLVPGFEFSGTVIEVADTKSSSTEEDDEEDV--LQVGDKVLAL--------N 109
            G   P  P + G++ SG V  V              +V   +VGD+V           N
Sbjct: 52  GGAPVPGQPKILGWDASGVVEAVGS------------EVTLFKVGDEVYYAGDITRPGSN 99

Query: 110 KELLHGFSDQCVVHTND---VFKIPEKMTFEHAASLADSYSTA-QIVFSR----HAKLKE 161
            E       Q V    D   V   P+ ++F  AA+L  +  TA + +F R         E
Sbjct: 100 AEY------QLV----DERIVGHKPKSLSFAEAAALPLTSLTAWEALFDRLGISEDAENE 149

Query: 162 KQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGA 208
            +T+L+    GG+G  A+ +A ++    VI   +  +    +++ GA
Sbjct: 150 GKTLLIIGGAGGVGSIAIQLAKQLTGLTVIATASRPESIAWVKELGA 196

This group contains a structure identified as an arginate lyase. Other members are identified quinone reductases, alginate lyases, and other proteins related to the zinc-dependent dehydrogenases/reductases. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 336

>gnl|CDD|176238 cd08277, liver_alcohol_DH_like, Liver alcohol dehydrogenase

 Score = 41.2 bits (97), Expect = 4e-04
 Identities = 54/205 (26%), Positives = 74/205 (36%), Gaps = 65/205 (31%)

Query: 44  KMM-TRINSSDLLLYNGSGDAKPTLPLVPGFEFSGTVIEVADTKSSSTEEDDEEDV--LQ 100
           KM+ T +  +D+L   G        P++ G E +G V  V             E V  L+
Sbjct: 33  KMLATSVCHTDILAIEGF--KATLFPVILGHEGAGIVESVG------------EGVTNLK 78

Query: 101 VGDKVLAL----------------------------------------NKELLH-----G 115
            GDKV+ L                                         K++ H      
Sbjct: 79  PGDKVIPLFIGQCGECSNCRSGKTNLCQKYRANESGLMPDGTSRFTCKGKKIYHFLGTST 138

Query: 116 FSDQCVVHTNDVFKIPEKMTFEHAASLADSYSTAQIVFSRHAKLKEKQTVLVTAAGGGLG 175
           FS   VV  N V KI      EH   L   +ST        AK++   TV V    G +G
Sbjct: 139 FSQYTVVDENYVAKIDPAAPLEHVCLLGCGFSTGYGAAWNTAKVEPGSTVAVFGL-GAVG 197

Query: 176 LAAVDMATKIYKA-KVIGVCNSEDK 199
           L+A+ M  KI  A ++IGV  +EDK
Sbjct: 198 LSAI-MGAKIAGASRIIGVDINEDK 221

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the substrate binding pocket and therefore in substrate specificity. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine (His-51), the ribose of NAD, a serine (Ser-48) , then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Length = 365

>gnl|CDD|176207 cd08245, CAD, Cinnamyl alcohol dehydrogenases (CAD) and related proteins

 Score = 40.4 bits (95), Expect = 6e-04
 Identities = 45/198 (22%), Positives = 67/198 (33%), Gaps = 50/198 (25%)

Query: 52  SDLLLYNGSGDAKPTLPLVPGFEFSGTVIEVADTKSSSTEEDDEEDVLQVGDKV------ 105
           +DL    G        PLVPG E  G V+EV                 +VGD+V      
Sbjct: 39  TDLHAAEGDW-GGSKYPLVPGHEIVGEVVEVGAGVEG----------RKVGDRVGVGWLV 87

Query: 106 --------LALNKELL------------HGFSDQCVVHTNDVFKIPEKMTFEHAASLADS 145
                        E L             G+++  V        +P+ +    AA L   
Sbjct: 88  GSCGRCEYCRRGLENLCQKAVNTGYTTQGGYAEYMVADAEYTVLLPDGLPLAQAAPL--- 144

Query: 146 YSTAQIVFS--RHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKA---KVIGVCNSEDKT 200
                 V+S  R A  +  + V V    GGLG     +A +  +A   + + +  S DK 
Sbjct: 145 LCAGITVYSALRDAGPRPGERVAVLGI-GGLG----HLAVQYARAMGFETVAITRSPDKR 199

Query: 201 DLIRQKGAWAALTFTNEK 218
           +L R+ GA   +    E 
Sbjct: 200 ELARKLGADEVVDSGAEL 217

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes, or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 330

>gnl|CDD|176194 cd08232, idonate-5-DH, L-idonate 5-dehydrogenase

 Score = 39.5 bits (93), Expect = 0.001
 Identities = 43/166 (25%), Positives = 59/166 (35%), Gaps = 48/166 (28%)

Query: 49  INSSDLLLYN--GSGDAKPTLPLVPGFEFSGTVIEVADTKSSSTEEDDEEDVLQVGDKVL 106
           I  SDL  Y   G G  +   P+V G E SG V  V    +           L  G +V 
Sbjct: 33  ICGSDLHYYQHGGFGTVRLREPMVLGHEVSGVVEAVGPGVTG----------LAPGQRV- 81

Query: 107 ALN------------KELLH-------------------GFSDQCVVHTNDVFKIPEKMT 135
           A+N                +                   GF +  VV  +    +P+ ++
Sbjct: 82  AVNPSRPCGTCDYCRAGRPNLCLNMRFLGSAMRFPHVQGGFREYLVVDASQCVPLPDGLS 141

Query: 136 FEHAASLADSYSTAQIVFSRHAKLKEKQTVLVTAAG--GGLGLAAV 179
              AA LA+  + A    +R   L  K  VLVT AG  G L +AA 
Sbjct: 142 LRRAA-LAEPLAVALHAVNRAGDLAGK-RVLVTGAGPIGALVVAAA 185

L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal GroES-like catalytic domain. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 339

>gnl|CDD|176219 cd08258, Zn_ADH4, Alcohol dehydrogenases of the MDR family

 Score = 38.1 bits (89), Expect = 0.003
 Identities = 18/42 (42%), Positives = 23/42 (54%), Gaps = 1/42 (2%)

Query: 1  VRIDIQCCALNSSDLLLYNGSGDAKPTLPLVPGFEFSGTIIE 42
          V I +    +  SDL +Y G  D     P+V G EFSGTI+E
Sbjct: 29 VLIKVAAAGICGSDLHIYKGDYDP-VETPVVLGHEFSGTIVE 69

This group shares the zinc coordination sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 306

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	296
COG1064	339	AdhP Zn-dependent alcohol dehydrogenases [General	100.0
COG0604	326	Qor NADPH:quinone reductase and related Zn-depende	100.0
KOG0024|consensus	354		100.0
KOG1197|consensus	336		100.0
KOG0023|consensus	360		100.0
COG1062	366	AdhC Zn-dependent alcohol dehydrogenases, class II	100.0
cd08281	371	liver_ADH_like1 Zinc-dependent alcohol dehydrogena	100.0
cd08239	339	THR_DH_like L-threonine dehydrogenase (TDH)-like.	100.0
TIGR03451	358	mycoS_dep_FDH mycothiol-dependent formaldehyde deh	100.0
PLN02740	381	Alcohol dehydrogenase-like	100.0
TIGR02818	368	adh_III_F_hyde S-(hydroxymethyl)glutathione dehydr	100.0
KOG0025|consensus	354		100.0
KOG0022|consensus	375		100.0
cd08300	368	alcohol_DH_class_III class III alcohol dehydrogena	100.0
cd08291	324	ETR_like_1 2-enoyl thioester reductase (ETR) like	100.0
PLN02827	378	Alcohol dehydrogenase-like	100.0
PRK09880	343	L-idonate 5-dehydrogenase; Provisional	100.0
cd08301	369	alcohol_DH_plants Plant alcohol dehydrogenase. NAD	100.0
TIGR02819	393	fdhA_non_GSH formaldehyde dehydrogenase, glutathio	100.0
cd08292	324	ETR_like_2 2-enoyl thioester reductase (ETR) like	100.0
COG1063	350	Tdh Threonine dehydrogenase and related Zn-depende	100.0
PLN02586	360	probable cinnamyl alcohol dehydrogenase	100.0
cd08277	365	liver_alcohol_DH_like Liver alcohol dehydrogenase.	100.0
cd08233	351	butanediol_DH_like (2R,3R)-2,3-butanediol dehydrog	100.0
cd08237	341	ribitol-5-phosphate_DH ribitol-5-phosphate dehydro	100.0
cd08295	338	double_bond_reductase_like Arabidopsis alkenal dou	100.0
PLN02178	375	cinnamyl-alcohol dehydrogenase	100.0
TIGR03201	349	dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-Co	100.0
cd08230	355	glucose_DH Glucose dehydrogenase. Glucose dehydrog	100.0
cd08293	345	PTGR2 Prostaglandin reductase. Prostaglandins and	100.0
PRK10309	347	galactitol-1-phosphate dehydrogenase; Provisional	100.0
TIGR02822	329	adh_fam_2 zinc-binding alcohol dehydrogenase famil	100.0
cd08231	361	MDR_TM0436_like Hypothetical enzyme TM0436 resembl	100.0
PLN02514	357	cinnamyl-alcohol dehydrogenase	100.0
cd08238	410	sorbose_phosphate_red L-sorbose-1-phosphate reduct	100.0
TIGR02825	325	B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15	100.0
TIGR01202	308	bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyl	99.98
PTZ00354	334	alcohol dehydrogenase; Provisional	99.98
cd08278	365	benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Be	99.98
cd05284	340	arabinose_DH_like D-arabinose dehydrogenase. This	99.98
PLN03154	348	putative allyl alcohol dehydrogenase; Provisional	99.98
TIGR02817	336	adh_fam_1 zinc-binding alcohol dehydrogenase famil	99.98
cd08296	333	CAD_like Cinnamyl alcohol dehydrogenases (CAD). Ci	99.98
cd08274	350	MDR9 Medium chain dehydrogenases/reductase (MDR)/z	99.98
cd08285	351	NADP_ADH NADP(H)-dependent alcohol dehydrogenases.	99.98
cd05278	347	FDH_like Formaldehyde dehydrogenases. Formaldehyde	99.97
cd08290	341	ETR 2-enoyl thioester reductase (ETR). 2-enoyl thi	99.97
cd08294	329	leukotriene_B4_DH_like 13-PGR is a bifunctional en	99.97
cd08299	373	alcohol_DH_class_I_II_IV class I, II, IV alcohol d	99.97
PRK10083	339	putative oxidoreductase; Provisional	99.97
cd08283	386	FDH_like_1 Glutathione-dependent formaldehyde dehy	99.97
PRK10754	327	quinone oxidoreductase, NADPH-dependent; Provision	99.97
cd08297	341	CAD3 Cinnamyl alcohol dehydrogenases (CAD). These	99.97
cd08244	324	MDR_enoyl_red Possible enoyl reductase. Member ide	99.97
cd08286	345	FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-lik	99.97
cd05280	325	MDR_yhdh_yhfp Yhdh and yhfp-like putative quinone	99.97
cd08250	329	Mgc45594_like Mgc45594 gene product and other MDR	99.97
cd08246	393	crotonyl_coA_red crotonyl-CoA reductase. Crotonyl-	99.97
cd08256	350	Zn_ADH2 Alcohol dehydrogenases of the MDR family.	99.97
cd08240	350	6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehy	99.97
KOG1198|consensus	347		99.97
cd08263	367	Zn_ADH10 Alcohol dehydrogenases of the MDR family.	99.97
cd05282	323	ETR_like 2-enoyl thioester reductase-like. 2-enoyl	99.97
cd08261	337	Zn_ADH7 Alcohol dehydrogenases of the MDR family.	99.97
cd08279	363	Zn_ADH_class_III Class III alcohol dehydrogenase.	99.97
cd08289	326	MDR_yhfp_like Yhfp putative quinone oxidoreductase	99.97
cd05279	365	Zn_ADH1 Liver alcohol dehydrogenase and related zi	99.97
cd08258	306	Zn_ADH4 Alcohol dehydrogenases of the MDR family.	99.97
cd08235	343	iditol_2_DH_like L-iditol 2-dehydrogenase. Putativ	99.97
cd08243	320	quinone_oxidoreductase_like_1 Quinone oxidoreducta	99.97
cd08260	345	Zn_ADH6 Alcohol dehydrogenases of the MDR family.	99.97
cd08249	339	enoyl_reductase_like enoyl_reductase_like. Member	99.97
cd08276	336	MDR7 Medium chain dehydrogenases/reductase (MDR)/z	99.97
cd08284	344	FDH_like_2 Glutathione-dependent formaldehyde dehy	99.97
PRK09422	338	ethanol-active dehydrogenase/acetaldehyde-active r	99.97
cd08253	325	zeta_crystallin Zeta-crystallin with NADP-dependen	99.97
cd08236	343	sugar_DH NAD(P)-dependent sugar dehydrogenases. Th	99.97
cd05276	323	p53_inducible_oxidoreductase PIG3 p53-inducible qu	99.97
cd08282	375	PFDH_like Pseudomonas putida aldehyde-dismutating	99.97
cd08251	303	polyketide_synthase polyketide synthase. Polyketid	99.97
cd08254	338	hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carbo	99.96
cd08252	336	AL_MDR Arginate lyase and other MDR family members	99.96
cd08272	326	MDR6 Medium chain dehydrogenases/reductase (MDR)/z	99.96
cd08287	345	FDH_like_ADH3 formaldehyde dehydrogenase (FDH)-lik	99.96
cd08259	332	Zn_ADH5 Alcohol dehydrogenases of the MDR family.	99.96
PRK05396	341	tdh L-threonine 3-dehydrogenase; Validated	99.96
cd08262	341	Zn_ADH8 Alcohol dehydrogenases of the MDR family.	99.96
cd08248	350	RTN4I1 Human Reticulon 4 Interacting Protein 1. Hu	99.96
cd05283	337	CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnam	99.96
cd05188	271	MDR Medium chain reductase/dehydrogenase (MDR)/zin	99.96
TIGR02823	323	oxido_YhdH putative quinone oxidoreductase, YhdH/Y	99.96
PRK13771	334	putative alcohol dehydrogenase; Provisional	99.96
TIGR01751	398	crot-CoA-red crotonyl-CoA reductase. The enzyme mo	99.96
cd05285	343	sorbitol_DH Sorbitol dehydrogenase. Sorbitol and a	99.96
TIGR02824	325	quinone_pig3 putative NAD(P)H quinone oxidoreducta	99.96
cd08266	342	Zn_ADH_like1 Alcohol dehydrogenases of the MDR fam	99.96
cd08265	384	Zn_ADH3 Alcohol dehydrogenases of the MDR family.	99.96
cd08234	334	threonine_DH_like L-threonine dehydrogenase. L-thr	99.96
cd08271	325	MDR5 Medium chain dehydrogenases/reductase (MDR)/z	99.96
cd05286	320	QOR2 Quinone oxidoreductase (QOR). Quinone oxidore	99.96
cd08247	352	AST1_like AST1 is a cytoplasmic protein associated	99.96
cd08268	328	MDR2 Medium chain dehydrogenases/reductase (MDR)/z	99.96
cd08270	305	MDR4 Medium chain dehydrogenases/reductase (MDR)/z	99.96
cd08242	319	MDR_like Medium chain dehydrogenases/reductase (MD	99.96
cd08269	312	Zn_ADH9 Alcohol dehydrogenases of the MDR family.	99.96
PLN02702	364	L-idonate 5-dehydrogenase	99.96
cd08273	331	MDR8 Medium chain dehydrogenases/reductase (MDR)/z	99.96
COG2130	340	Putative NADP-dependent oxidoreductases [General f	99.96
cd08264	325	Zn_ADH_like2 Alcohol dehydrogenases of the MDR fam	99.96
cd08298	329	CAD2 Cinnamyl alcohol dehydrogenases (CAD). These	99.96
cd08288	324	MDR_yhdh Yhdh putative quinone oxidoreductases. Yh	99.96
cd05281	341	TDH Threonine dehydrogenase. L-threonine dehydroge	99.96
cd05195	293	enoyl_red enoyl reductase of polyketide synthase.	99.95
TIGR00692	340	tdh L-threonine 3-dehydrogenase. E. coli His-90 mo	99.95
cd08241	323	QOR1 Quinone oxidoreductase (QOR). QOR catalyzes t	99.95
TIGR03366	280	HpnZ_proposed putative phosphonate catabolism asso	99.95
cd05289	309	MDR_like_2 alcohol dehydrogenase and quinone reduc	99.95
cd08245	330	CAD Cinnamyl alcohol dehydrogenases (CAD) and rela	99.95
cd05288	329	PGDH Prostaglandin dehydrogenases. Prostaglandins	99.95
cd08232	339	idonate-5-DH L-idonate 5-dehydrogenase. L-idonate	99.95
smart00829	288	PKS_ER Enoylreductase. Enoylreductase in Polyketid	99.94
cd08267	319	MDR1 Medium chain dehydrogenases/reductase (MDR)/z	99.94
cd08275	337	MDR3 Medium chain dehydrogenases/reductase (MDR)/z	99.94
KOG1196|consensus	343		99.9
cd08255	277	2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_	99.87
KOG1202|consensus	2376		99.85
PF08240	109	ADH_N: Alcohol dehydrogenase GroES-like domain; In	99.72
PF00107	130	ADH_zinc_N: Zinc-binding dehydrogenase; InterPro:	99.49
PRK09424	509	pntA NAD(P) transhydrogenase subunit alpha; Provis	98.73
cd00401	413	AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado	98.43
COG4221	246	Short-chain alcohol dehydrogenase of unknown speci	97.9
TIGR00561	511	pntA NAD(P) transhydrogenase, alpha subunit. In so	97.7
PRK05476	425	S-adenosyl-L-homocysteine hydrolase; Provisional	97.57
COG0300	265	DltE Short-chain dehydrogenases of various substra	97.51
PRK05993	277	short chain dehydrogenase; Provisional	97.39
TIGR00936	406	ahcY adenosylhomocysteinase. This enzyme hydrolyze	97.34
PRK05693	274	short chain dehydrogenase; Provisional	97.31
PRK06182	273	short chain dehydrogenase; Validated	97.31
PRK00517	250	prmA ribosomal protein L11 methyltransferase; Revi	97.3
cd05213	311	NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain	97.29
PRK08324	681	short chain dehydrogenase; Validated	97.17
COG3967	245	DltE Short-chain dehydrogenase involved in D-alani	97.15
PRK06139	330	short chain dehydrogenase; Provisional	97.15
PRK08306	296	dipicolinate synthase subunit A; Reviewed	97.13
PRK07904	253	short chain dehydrogenase; Provisional	97.11
PRK08339	263	short chain dehydrogenase; Provisional	97.08
PLN02494	477	adenosylhomocysteinase	97.08
PRK05872	296	short chain dehydrogenase; Provisional	97.05
TIGR03325	262	BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydro	97.04
PRK07060	245	short chain dehydrogenase; Provisional	97.04
PRK08017	256	oxidoreductase; Provisional	96.99
PRK08177	225	short chain dehydrogenase; Provisional	96.98
PRK07825	273	short chain dehydrogenase; Provisional	96.97
PRK06200	263	2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrog	96.97
PRK05786	238	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	96.97
PRK07831	262	short chain dehydrogenase; Provisional	96.91
PRK06057	255	short chain dehydrogenase; Provisional	96.88
PRK12742	237	oxidoreductase; Provisional	96.85
PRK09072	263	short chain dehydrogenase; Provisional	96.84
PRK12771	564	putative glutamate synthase (NADPH) small subunit;	96.84
PRK07231	251	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	96.83
PRK07024	257	short chain dehydrogenase; Provisional	96.82
PRK06180	277	short chain dehydrogenase; Provisional	96.82
PRK06953	222	short chain dehydrogenase; Provisional	96.82
PRK06196	315	oxidoreductase; Provisional	96.81
PLN02780	320	ketoreductase/ oxidoreductase	96.8
PRK08267	260	short chain dehydrogenase; Provisional	96.77
PF01488	135	Shikimate_DH: Shikimate / quinate 5-dehydrogenase;	96.77
PRK06949	258	short chain dehydrogenase; Provisional	96.74
PRK12828	239	short chain dehydrogenase; Provisional	96.73
PRK08217	253	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	96.73
PRK06841	255	short chain dehydrogenase; Provisional	96.73
PLN03209	576	translocon at the inner envelope of chloroplast su	96.72
PRK08265	261	short chain dehydrogenase; Provisional	96.68
PRK07062	265	short chain dehydrogenase; Provisional	96.68
PRK00045	423	hemA glutamyl-tRNA reductase; Reviewed	96.67
PRK12829	264	short chain dehydrogenase; Provisional	96.65
PRK05866	293	short chain dehydrogenase; Provisional	96.64
PRK05867	253	short chain dehydrogenase; Provisional	96.63
TIGR01832	248	kduD 2-deoxy-D-gluconate 3-dehydrogenase. This mod	96.63
PF13460	183	NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X	96.63
PRK06483	236	dihydromonapterin reductase; Provisional	96.62
PRK07523	255	gluconate 5-dehydrogenase; Provisional	96.61
PRK09291	257	short chain dehydrogenase; Provisional	96.6
PRK07577	234	short chain dehydrogenase; Provisional	96.6
PRK11873	272	arsM arsenite S-adenosylmethyltransferase; Reviewe	96.59
PRK07814	263	short chain dehydrogenase; Provisional	96.59
PRK07326	237	short chain dehydrogenase; Provisional	96.58
PRK08862	227	short chain dehydrogenase; Provisional	96.57
PRK07478	254	short chain dehydrogenase; Provisional	96.57
PRK05854	313	short chain dehydrogenase; Provisional	96.55
KOG1205|consensus	282		96.54
KOG1014|consensus	312		96.53
PRK07774	250	short chain dehydrogenase; Provisional	96.5
PRK06500	249	short chain dehydrogenase; Provisional	96.5
PRK05717	255	oxidoreductase; Validated	96.49
PRK06079	252	enoyl-(acyl carrier protein) reductase; Provisiona	96.49
PRK06194	287	hypothetical protein; Provisional	96.49
PRK05653	246	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	96.47
PRK07109	334	short chain dehydrogenase; Provisional	96.47
PRK04148	134	hypothetical protein; Provisional	96.46
PRK08589	272	short chain dehydrogenase; Validated	96.46
PRK07890	258	short chain dehydrogenase; Provisional	96.45
PRK12481	251	2-deoxy-D-gluconate 3-dehydrogenase; Provisional	96.45
PTZ00075	476	Adenosylhomocysteinase; Provisional	96.45
PRK06179	270	short chain dehydrogenase; Provisional	96.44
PRK12939	250	short chain dehydrogenase; Provisional	96.43
KOG0725|consensus	270		96.43
PRK07454	241	short chain dehydrogenase; Provisional	96.42
PRK06463	255	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	96.41
PRK08628	258	short chain dehydrogenase; Provisional	96.4
PRK06505	271	enoyl-(acyl carrier protein) reductase; Provisiona	96.4
PRK06138	252	short chain dehydrogenase; Provisional	96.39
PLN02253	280	xanthoxin dehydrogenase	96.39
PRK07677	252	short chain dehydrogenase; Provisional	96.37
TIGR00518	370	alaDH alanine dehydrogenase. The family of known L	96.37
PRK07035	252	short chain dehydrogenase; Provisional	96.37
PRK08213	259	gluconate 5-dehydrogenase; Provisional	96.36
PRK07576	264	short chain dehydrogenase; Provisional	96.36
PRK05876	275	short chain dehydrogenase; Provisional	96.35
PRK06125	259	short chain dehydrogenase; Provisional	96.33
PRK13394	262	3-hydroxybutyrate dehydrogenase; Provisional	96.33
PRK05884	223	short chain dehydrogenase; Provisional	96.33
PRK07453	322	protochlorophyllide oxidoreductase; Validated	96.32
PRK10538	248	malonic semialdehyde reductase; Provisional	96.31
PRK07063	260	short chain dehydrogenase; Provisional	96.3
KOG1201|consensus	300		96.3
PRK08264	238	short chain dehydrogenase; Validated	96.3
PRK09186	256	flagellin modification protein A; Provisional	96.29
PRK08340	259	glucose-1-dehydrogenase; Provisional	96.28
PRK12823	260	benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylat	96.27
PRK06482	276	short chain dehydrogenase; Provisional	96.27
PRK07533	258	enoyl-(acyl carrier protein) reductase; Provisiona	96.26
PRK06398	258	aldose dehydrogenase; Validated	96.25
PRK06181	263	short chain dehydrogenase; Provisional	96.25
PRK12367	245	short chain dehydrogenase; Provisional	96.24
COG2518	209	Pcm Protein-L-isoaspartate carboxylmethyltransfera	96.24
PRK06172	253	short chain dehydrogenase; Provisional	96.24
PRK06114	254	short chain dehydrogenase; Provisional	96.22
PRK07832	272	short chain dehydrogenase; Provisional	96.22
PF00106	167	adh_short: short chain dehydrogenase alcohol dehyd	96.17
PRK08415	274	enoyl-(acyl carrier protein) reductase; Provisiona	96.16
PRK06603	260	enoyl-(acyl carrier protein) reductase; Provisiona	96.15
PRK08643	256	acetoin reductase; Validated	96.15
PRK09242	257	tropinone reductase; Provisional	96.15
PRK07856	252	short chain dehydrogenase; Provisional	96.15
PRK08263	275	short chain dehydrogenase; Provisional	96.15
PRK06198	260	short chain dehydrogenase; Provisional	96.14
COG1748	389	LYS9 Saccharopine dehydrogenase and related protei	96.13
cd01078	194	NAD_bind_H4MPT_DH NADP binding domain of methylene	96.13
PRK06197	306	short chain dehydrogenase; Provisional	96.13
PRK07791	286	short chain dehydrogenase; Provisional	96.12
PRK07074	257	short chain dehydrogenase; Provisional	96.12
PRK06101	240	short chain dehydrogenase; Provisional	96.11
PRK08251	248	short chain dehydrogenase; Provisional	96.07
PRK07067	257	sorbitol dehydrogenase; Provisional	96.06
PRK12384	259	sorbitol-6-phosphate dehydrogenase; Provisional	96.06
PRK12826	251	3-ketoacyl-(acyl-carrier-protein) reductase; Revie	96.05
PRK07806	248	short chain dehydrogenase; Provisional	96.05
PRK06523	260	short chain dehydrogenase; Provisional	96.04
PRK06720	169	hypothetical protein; Provisional	96.04
PRK03369	488	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.03
PRK08993	253	2-deoxy-D-gluconate 3-dehydrogenase; Validated	96.03
CHL00194	317	ycf39 Ycf39; Provisional	96.03
PRK08226	263	short chain dehydrogenase; Provisional	96.03
PRK08303	305	short chain dehydrogenase; Provisional	96.02
PRK08085	254	gluconate 5-dehydrogenase; Provisional	96.02
PRK08690	261	enoyl-(acyl carrier protein) reductase; Provisiona	96.01
PRK08703	239	short chain dehydrogenase; Provisional	96.01
PRK06124	256	gluconate 5-dehydrogenase; Provisional	96.0
PRK06484	520	short chain dehydrogenase; Validated	96.0
PRK07984	262	enoyl-(acyl carrier protein) reductase; Provisiona	95.99
PRK08278	273	short chain dehydrogenase; Provisional	95.97
TIGR02853	287	spore_dpaA dipicolinic acid synthetase, A subunit.	95.96
PRK08277	278	D-mannonate oxidoreductase; Provisional	95.96
KOG1209|consensus	289		95.96
PRK07097	265	gluconate 5-dehydrogenase; Provisional	95.96
PRK07424	406	bifunctional sterol desaturase/short chain dehydro	95.96
PRK06914	280	short chain dehydrogenase; Provisional	95.95
PRK06484	520	short chain dehydrogenase; Validated	95.93
PRK06935	258	2-deoxy-D-gluconate 3-dehydrogenase; Provisional	95.91
PRK12429	258	3-hydroxybutyrate dehydrogenase; Provisional	95.88
PRK12743	256	oxidoreductase; Provisional	95.86
PRK07889	256	enoyl-(acyl carrier protein) reductase; Provisiona	95.83
PF03435	386	Saccharop_dh: Saccharopine dehydrogenase ; InterPr	95.83
PRK05875	276	short chain dehydrogenase; Provisional	95.82
PLN00141	251	Tic62-NAD(P)-related group II protein; Provisional	95.82
TIGR02632	676	RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alc	95.82
PRK08159	272	enoyl-(acyl carrier protein) reductase; Provisiona	95.81
PRK05557	248	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	95.81
TIGR03206	250	benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydr	95.79
PRK07666	239	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	95.79
PRK06128	300	oxidoreductase; Provisional	95.77
PRK08594	257	enoyl-(acyl carrier protein) reductase; Provisiona	95.77
PRK12936	245	3-ketoacyl-(acyl-carrier-protein) reductase NodG;	95.74
PF11017	314	DUF2855: Protein of unknown function (DUF2855); In	95.71
PRK08261	450	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	95.71
PF02670	129	DXP_reductoisom: 1-deoxy-D-xylulose 5-phosphate re	95.69
PRK05650	270	short chain dehydrogenase; Provisional	95.67
TIGR01963	255	PHB_DH 3-hydroxybutyrate dehydrogenase. This model	95.67
PRK12938	246	acetyacetyl-CoA reductase; Provisional	95.67
PRK08219	227	short chain dehydrogenase; Provisional	95.66
PRK07102	243	short chain dehydrogenase; Provisional	95.6
PRK07792	306	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	95.6
PRK06113	255	7-alpha-hydroxysteroid dehydrogenase; Validated	95.6
PRK07370	258	enoyl-(acyl carrier protein) reductase; Validated	95.6
TIGR01035	417	hemA glutamyl-tRNA reductase. This enzyme, togethe	95.58
PRK06171	266	sorbitol-6-phosphate 2-dehydrogenase; Provisional	95.52
PF05368	233	NmrA: NmrA-like family; InterPro: IPR008030 NmrA i	95.5
PRK08063	250	enoyl-(acyl carrier protein) reductase; Provisiona	95.48
PRK08945	247	putative oxoacyl-(acyl carrier protein) reductase;	95.46
PRK08416	260	7-alpha-hydroxysteroid dehydrogenase; Provisional	95.46
TIGR01289	314	LPOR light-dependent protochlorophyllide reductase	95.43
PRK12746	254	short chain dehydrogenase; Provisional	95.42
TIGR02622	349	CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Member	95.42
PRK09135	249	pteridine reductase; Provisional	95.41
PRK06701	290	short chain dehydrogenase; Provisional	95.32
PRK12937	245	short chain dehydrogenase; Provisional	95.29
KOG1208|consensus	314		95.28
PRK07775	274	short chain dehydrogenase; Provisional	95.28
PRK12745	256	3-ketoacyl-(acyl-carrier-protein) reductase; Provi	95.27
PRK06940	275	short chain dehydrogenase; Provisional	95.26
PRK05599	246	hypothetical protein; Provisional	95.26
TIGR00406	288	prmA ribosomal protein L11 methyltransferase. Ribo	95.25
PRK00377	198	cbiT cobalt-precorrin-6Y C(15)-methyltransferase;	95.23
PRK05565	247	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	95.22
PLN02657	390	3,8-divinyl protochlorophyllide a 8-vinyl reductas	95.22
PRK08642	253	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	95.19
PRK07201	657	short chain dehydrogenase; Provisional	95.19
PRK11705	383	cyclopropane fatty acyl phospholipid synthase; Pro	95.13
PRK12747	252	short chain dehydrogenase; Provisional	95.13
TIGR01829	242	AcAcCoA_reduct acetoacetyl-CoA reductase. (R)-3-hy	95.11
PRK06997	260	enoyl-(acyl carrier protein) reductase; Provisiona	95.11
PF12847	112	Methyltransf_18: Methyltransferase domain; PDB: 3G	95.09
PRK12935	247	acetoacetyl-CoA reductase; Provisional	95.09
COG2910	211	Putative NADH-flavin reductase [General function p	95.08
PRK07985	294	oxidoreductase; Provisional	95.08
PRK08936	261	glucose-1-dehydrogenase; Provisional	95.05
COG2227	243	UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-	95.03
PRK05855	582	short chain dehydrogenase; Validated	95.03
PRK08220	252	2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated	95.03
PRK06077	252	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	95.03
PRK09134	258	short chain dehydrogenase; Provisional	95.01
TIGR00438	188	rrmJ cell division protein FtsJ.	94.97
TIGR02415	254	23BDH acetoin reductases. One member of this famil	94.91
PRK12825	249	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	94.85
PRK07023	243	short chain dehydrogenase; Provisional	94.84
KOG1210|consensus	331		94.83
PRK12744	257	short chain dehydrogenase; Provisional	94.81
PRK07069	251	short chain dehydrogenase; Validated	94.8
PRK05447	385	1-deoxy-D-xylulose 5-phosphate reductoisomerase; P	94.78
PLN02653	340	GDP-mannose 4,6-dehydratase	94.74
PRK13943	322	protein-L-isoaspartate O-methyltransferase; Provis	94.7
PRK12859	256	3-ketoacyl-(acyl-carrier-protein) reductase; Provi	94.68
PLN02986	322	cinnamyl-alcohol dehydrogenase family protein	94.65
TIGR01472	343	gmd GDP-mannose 4,6-dehydratase. Excluded from thi	94.62
COG4122	219	Predicted O-methyltransferase [General function pr	94.57
TIGR00507	270	aroE shikimate 5-dehydrogenase. This model finds p	94.55
TIGR02685	267	pter_reduc_Leis pteridine reductase. Pteridine red	94.55
PF02826	178	2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehy	94.53
PRK06947	248	glucose-1-dehydrogenase; Provisional	94.53
PF01118	121	Semialdhyde_dh: Semialdehyde dehydrogenase, NAD bi	94.52
TIGR03589	324	PseB UDP-N-acetylglucosamine 4,6-dehydratase. This	94.52
PRK07041	230	short chain dehydrogenase; Provisional	94.51
PF01262	168	AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal	94.5
PLN02989	325	cinnamyl-alcohol dehydrogenase family protein	94.5
PRK09730	247	putative NAD(P)-binding oxidoreductase; Provisiona	94.43
PLN02896	353	cinnamyl-alcohol dehydrogenase	94.41
PRK13940	414	glutamyl-tRNA reductase; Provisional	94.35
PRK12827	249	short chain dehydrogenase; Provisional	94.32
KOG4022|consensus	236		94.31
TIGR03649	285	ergot_EASG ergot alkaloid biosynthesis protein, AF	94.27
COG2242	187	CobL Precorrin-6B methylase 2 [Coenzyme metabolism	94.22
PRK06550	235	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	94.19
COG1028	251	FabG Dehydrogenases with different specificities (	94.19
TIGR01500	256	sepiapter_red sepiapterin reductase. This model de	94.04
PLN02427	386	UDP-apiose/xylose synthase	94.03
TIGR01830	239	3oxo_ACP_reduc 3-oxoacyl-(acyl-carrier-protein) re	94.02
PLN02214	342	cinnamoyl-CoA reductase	94.01
KOG1200|consensus	256		93.99
PF00670	162	AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase	93.98
KOG1610|consensus	322		93.93
PRK12824	245	acetoacetyl-CoA reductase; Provisional	93.91
PF01370	236	Epimerase: NAD dependent epimerase/dehydratase fam	93.89
PRK12748	256	3-ketoacyl-(acyl-carrier-protein) reductase; Provi	93.87
PRK12548	289	shikimate 5-dehydrogenase; Provisional	93.82
PRK06123	248	short chain dehydrogenase; Provisional	93.81
cd01075	200	NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l	93.81
PLN02240	352	UDP-glucose 4-epimerase	93.73
KOG4169|consensus	261		93.67
PRK08125	660	bifunctional UDP-glucuronic acid decarboxylase/UDP	93.66
PF04321	286	RmlD_sub_bind: RmlD substrate binding domain; Inte	93.62
PRK08261	450	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	93.62
TIGR00715	256	precor6x_red precorrin-6x reductase. This enzyme w	93.46
TIGR03466	328	HpnA hopanoid-associated sugar epimerase. The sequ	93.45
TIGR01214	287	rmlD dTDP-4-dehydrorhamnose reductase. This enzyme	93.44
KOG1199|consensus	260		93.43
PF08659	181	KR: KR domain; InterPro: IPR013968 This domain is	93.35
PLN00015	308	protochlorophyllide reductase	93.33
PRK11908	347	NAD-dependent epimerase/dehydratase family protein	93.32
PF03807	96	F420_oxidored: NADP oxidoreductase coenzyme F420-d	93.3
PRK07578	199	short chain dehydrogenase; Provisional	93.27
PLN02686	367	cinnamoyl-CoA reductase	93.25
PRK06924	251	short chain dehydrogenase; Provisional	93.25
PLN02781	234	Probable caffeoyl-CoA O-methyltransferase	93.23
PLN02662	322	cinnamyl-alcohol dehydrogenase family protein	93.2
PLN02589	247	caffeoyl-CoA O-methyltransferase	93.18
TIGR01831	239	fabG_rel 3-oxoacyl-(acyl-carrier-protein) reductas	93.16
PRK13942	212	protein-L-isoaspartate O-methyltransferase; Provis	93.15
TIGR01181	317	dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase. This	93.07
TIGR02356	202	adenyl_thiF thiazole biosynthesis adenylyltransfer	93.01
PLN00016	378	RNA-binding protein; Provisional	92.98
PLN02696	454	1-deoxy-D-xylulose-5-phosphate reductoisomerase	92.93
PRK13656	398	trans-2-enoyl-CoA reductase; Provisional	92.81
PLN02650	351	dihydroflavonol-4-reductase	92.77
PF01135	209	PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl	92.75
TIGR01318	467	gltD_gamma_fam glutamate synthase small subunit fa	92.72
cd01080	168	NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of	92.71
KOG1502|consensus	327		92.67
PLN00198	338	anthocyanidin reductase; Provisional	92.64
PRK02472	447	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	92.61
TIGR02813	2582	omega_3_PfaA polyketide-type polyunsaturated fatty	92.57
PRK01438	480	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	92.51
PRK13944	205	protein-L-isoaspartate O-methyltransferase; Provis	92.5
PRK10675	338	UDP-galactose-4-epimerase; Provisional	92.48
cd01065	155	NAD_bind_Shikimate_DH NAD(P) binding domain of Shi	92.46
PLN02476	278	O-methyltransferase	92.44
PRK06719	157	precorrin-2 dehydrogenase; Validated	92.44
TIGR01179	328	galE UDP-glucose-4-epimerase. This enzyme intercon	92.43
TIGR02469	124	CbiT precorrin-6Y C5,15-methyltransferase (decarbo	92.42
PF01596	205	Methyltransf_3: O-methyltransferase; InterPro: IPR	92.42
PLN02583	297	cinnamoyl-CoA reductase	92.4
PF13602	127	ADH_zinc_N_2: Zinc-binding dehydrogenase; PDB: 3TQ	92.35
PRK15181	348	Vi polysaccharide biosynthesis protein TviC; Provi	92.33
PF01113	124	DapB_N: Dihydrodipicolinate reductase, N-terminus;	92.33
PF02254	116	TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg	92.26
KOG1207|consensus	245		92.17
TIGR01470	205	cysG_Nterm siroheme synthase, N-terminal domain. T	92.14
COG0686	371	Ald Alanine dehydrogenase [Amino acid transport an	92.06
PRK06718	202	precorrin-2 dehydrogenase; Reviewed	92.04
PRK05579	399	bifunctional phosphopantothenoylcysteine decarboxy	92.01
PRK06849	389	hypothetical protein; Provisional	92.01
PLN02695	370	GDP-D-mannose-3',5'-epimerase	92.0
PRK00107	187	gidB 16S rRNA methyltransferase GidB; Reviewed	91.99
PRK10217	355	dTDP-glucose 4,6-dehydratase; Provisional	91.91
PRK08309	177	short chain dehydrogenase; Provisional	91.89
smart00822	180	PKS_KR This enzymatic domain is part of bacterial	91.87
TIGR00243	389	Dxr 1-deoxy-D-xylulose 5-phosphate reductoisomeras	91.72
PRK07502	307	cyclohexadienyl dehydrogenase; Validated	91.7
PRK12809	639	putative oxidoreductase Fe-S binding subunit; Revi	91.7
PF02719	293	Polysacc_synt_2: Polysaccharide biosynthesis prote	91.6
TIGR02197	314	heptose_epim ADP-L-glycero-D-manno-heptose-6-epime	91.58
TIGR01777	292	yfcH conserved hypothetical protein TIGR01777. Thi	91.52
PRK00258	278	aroE shikimate 5-dehydrogenase; Reviewed	91.48
PRK12549	284	shikimate 5-dehydrogenase; Reviewed	91.44
COG0702	275	Predicted nucleoside-diphosphate-sugar epimerases	91.39
COG0031	300	CysK Cysteine synthase [Amino acid transport and m	91.32
COG0569	225	TrkA K+ transport systems, NAD-binding component [	91.3
COG1086	588	Predicted nucleoside-diphosphate sugar epimerases	91.29
COG2230	283	Cfa Cyclopropane fatty acid synthase and related m	91.28
TIGR00080	215	pimt protein-L-isoaspartate(D-aspartate) O-methylt	91.24
COG1179	263	Dinucleotide-utilizing enzymes involved in molybdo	91.23
PRK09987	299	dTDP-4-dehydrorhamnose reductase; Provisional	91.2
PRK12475	338	thiamine/molybdopterin biosynthesis MoeB-like prot	91.19
PRK12550	272	shikimate 5-dehydrogenase; Reviewed	91.14
PLN02730	303	enoyl-[acyl-carrier-protein] reductase	91.14
COG0169	283	AroE Shikimate 5-dehydrogenase [Amino acid transpo	90.94
PRK09620	229	hypothetical protein; Provisional	90.91
KOG1252|consensus	362		90.89
PRK12769	654	putative oxidoreductase Fe-S binding subunit; Revi	90.87
PLN02572	442	UDP-sulfoquinovose synthase	90.86
TIGR02355	240	moeB molybdopterin synthase sulfurylase MoeB. This	90.71
PRK14967	223	putative methyltransferase; Provisional	90.57
PF13241	103	NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_	90.54
KOG1611|consensus	249		90.53
PRK07688	339	thiamine/molybdopterin biosynthesis ThiF/MoeB-like	90.49
PRK04457	262	spermidine synthase; Provisional	90.34
COG1090	297	Predicted nucleoside-diphosphate sugar epimerase [	90.32
PRK03562	621	glutathione-regulated potassium-efflux system prot	90.31
PRK14106	450	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	90.28
cd05311	226	NAD_bind_2_malic_enz NAD(P) binding domain of mali	90.25
PF07991	165	IlvN: Acetohydroxy acid isomeroreductase, catalyti	90.22
PRK14027	283	quinate/shikimate dehydrogenase; Provisional	90.16
PF00899	135	ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-a	90.01
PRK08644	212	thiamine biosynthesis protein ThiF; Provisional	90.0
PRK14874	334	aspartate-semialdehyde dehydrogenase; Provisional	89.86
PLN00203	519	glutamyl-tRNA reductase	89.82
TIGR01809	282	Shik-DH-AROM shikimate-5-dehydrogenase, fungal ARO	89.75
PRK11150	308	rfaD ADP-L-glycero-D-mannoheptose-6-epimerase; Pro	89.73
PRK08618	325	ornithine cyclodeaminase; Validated	89.69
PRK09310	477	aroDE bifunctional 3-dehydroquinate dehydratase/sh	89.59
COG0373	414	HemA Glutamyl-tRNA reductase [Coenzyme metabolism]	89.58
PLN03013	429	cysteine synthase	89.53
PRK10669	558	putative cation:proton antiport protein; Provision	89.45
PF13561	241	adh_short_C2: Enoyl-(Acyl carrier protein) reducta	89.34
PRK01710	458	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	89.32
PRK09009	235	C factor cell-cell signaling protein; Provisional	89.32
cd00755	231	YgdL_like Family of activating enzymes (E1) of ubi	89.09
COG1087	329	GalE UDP-glucose 4-epimerase [Cell envelope biogen	89.01
PF03446	163	NAD_binding_2: NAD binding domain of 6-phosphogluc	88.97

>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]

Probab=100.00  E-value=8.3e-44  Score=318.47  Aligned_cols=241  Identities=27%  Similarity=0.357  Sum_probs=216.0

Q ss_pred             CCcceEEecCCCCC-----CCCCCCCCCCCCCCcEEEEeeeeecChhhHHHHcCCCCCCCCCCCcCCCceeEEEEEEccC
Q psy1959          11 NSSDLLLYNGSGDA-----KPTLPLVPGFEFSGTIIEKKMMTRINSSDLLLYNGSGDAKPTLPLVPGFEFSGTVIEVADT   85 (296)
Q Consensus        11 ~~~~~~~~~~~~~~-----~~~p~~~~~~~~~~evlvkv~~~~i~~~D~~~~~g~~~~~~~~p~~~G~e~~G~V~~v~~~   85 (296)
                      -+||++++.+.+++     ++.|.|+|+     ||+|||.|+|+|++|++.++|.++.. .+|++||||.+|+|+++   
T Consensus         2 ~~mkA~~~~~~~~pl~i~e~~~p~p~~~-----eVlI~v~~~GVChsDlH~~~G~~~~~-~~P~ipGHEivG~V~~v---   72 (339)
T COG1064           2 MTMKAAVLKKFGQPLEIEEVPVPEPGPG-----EVLIKVEACGVCHTDLHVAKGDWPVP-KLPLIPGHEIVGTVVEV---   72 (339)
T ss_pred             cceEEEEEccCCCCceEEeccCCCCCCC-----eEEEEEEEEeecchhhhhhcCCCCCC-CCCccCCcceEEEEEEe---
Confidence            36899999998885     678889999     99999999999999999999999884 49999999999999999   


Q ss_pred             CCCCCCCCCCCCCCCCCCEEEE-ecC-------------------------CCCCcccceEeeeCCceEECCCCCCHHHH
Q psy1959          86 KSSSTEEDDEEDVLQVGDKVLA-LNK-------------------------ELLHGFSDQCVVHTNDVFKIPEKMTFEHA  139 (296)
Q Consensus        86 ~~~~~~~g~~v~~~~~Gd~V~~-~~~-------------------------~~~g~~~~~~~v~~~~~~~iP~~~~~~~a  139 (296)
                             |++|++|++||||.. +..                         ..+|+|+||+++|+.+++++|++++++.|
T Consensus        73 -------G~~V~~~k~GDrVgV~~~~~~Cg~C~~C~~G~E~~C~~~~~~gy~~~GGyaeyv~v~~~~~~~iP~~~d~~~a  145 (339)
T COG1064          73 -------GEGVTGLKVGDRVGVGWLVISCGECEYCRSGNENLCPNQKITGYTTDGGYAEYVVVPARYVVKIPEGLDLAEA  145 (339)
T ss_pred             -------cCCCccCCCCCEEEecCccCCCCCCccccCcccccCCCccccceeecCcceeEEEEchHHeEECCCCCChhhh
Confidence                   999999999999996 211                         23799999999999999999999999999


Q ss_pred             hhhccHHHHHHHHHHHHcCCCCCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCcEEEEcCCchh
Q psy1959         140 ASLADSYSTAQIVFSRHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKS  219 (296)
Q Consensus       140 a~l~~~~~ta~~~l~~~~~~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~  219 (296)
                      |.|.+++.|.|++| +.++++||++|+|.|+ |++|++++|+| +.+|++|++++++++|++.++++|++.+++.++ .+
T Consensus       146 ApllCaGiT~y~al-k~~~~~pG~~V~I~G~-GGlGh~avQ~A-ka~ga~Via~~~~~~K~e~a~~lGAd~~i~~~~-~~  221 (339)
T COG1064         146 APLLCAGITTYRAL-KKANVKPGKWVAVVGA-GGLGHMAVQYA-KAMGAEVIAITRSEEKLELAKKLGADHVINSSD-SD  221 (339)
T ss_pred             hhhhcCeeeEeeeh-hhcCCCCCCEEEEECC-cHHHHHHHHHH-HHcCCeEEEEeCChHHHHHHHHhCCcEEEEcCC-ch
Confidence            99999999999999 6699999999999998 89999999999 778999999999999999999999999999875 66


Q ss_pred             HHHHHHHHhCCCcccEEEECCCCccHHHHHHHhhccCceEE------------eecccceeeeeEEeccc
Q psy1959         220 LVNKVLEVSGGKYANVVFEAVGGEDKTDLIRQKGAWAALTF------------TNEKSLVNKVLEVSGGK  277 (296)
Q Consensus       220 ~~~~i~~~~~~~g~d~vld~~g~~~~~~~~~~lg~~~g~~~------------~~~~~~~~k~~~i~g~~  277 (296)
                      ..+.+.+.     +|+++|+++..+++.++++| +++|++.            ++...++.++++|.||.
T Consensus       222 ~~~~~~~~-----~d~ii~tv~~~~~~~~l~~l-~~~G~~v~vG~~~~~~~~~~~~~~li~~~~~i~GS~  285 (339)
T COG1064         222 ALEAVKEI-----ADAIIDTVGPATLEPSLKAL-RRGGTLVLVGLPGGGPIPLLPAFLLILKEISIVGSL  285 (339)
T ss_pred             hhHHhHhh-----CcEEEECCChhhHHHHHHHH-hcCCEEEEECCCCCcccCCCCHHHhhhcCeEEEEEe
Confidence            66666553     99999999977999999999 8887762            22345788999999987

>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]

Probab=100.00  E-value=1.8e-41  Score=308.34  Aligned_cols=236  Identities=29%  Similarity=0.434  Sum_probs=210.2

Q ss_pred             eeEeecccCCcceEEecCCCCCCCCCCCCCCCCCCCcEEEEeeeeecChhhHHHHcCCCCCCCCCCCcCCCceeEEEEEE
Q psy1959           3 IDIQCCALNSSDLLLYNGSGDAKPTLPLVPGFEFSGTIIEKKMMTRINSSDLLLYNGSGDAKPTLPLVPGFEFSGTVIEV   82 (296)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~evlvkv~~~~i~~~D~~~~~g~~~~~~~~p~~~G~e~~G~V~~v   82 (296)
                      ..+.+..+|....+.+.    ..|.|.|.++     ||||||.++++|+.|...++|......++|+++|.|++|+|+++
T Consensus         2 ka~~~~~~g~~~~l~~~----e~~~P~p~~g-----eVlVrV~a~gvN~~D~~~r~G~~~~~~~~P~i~G~d~aG~V~av   72 (326)
T COG0604           2 KAVVVEEFGGPEVLKVV----EVPEPEPGPG-----EVLVRVKAAGVNPIDVLVRQGLAPPVRPLPFIPGSEAAGVVVAV   72 (326)
T ss_pred             eEEEEeccCCCceeEEE----ecCCCCCCCC-----eEEEEEEEeecChHHHHhccCCCCCCCCCCCcccceeEEEEEEe
Confidence            34555555555555555    3788889999     99999999999999999999985444568999999999999999


Q ss_pred             ccCCCCCCCCCCCCCCCCCCCEEEEec-CCCCCcccceEeeeCCceEECCCCCCHHHHhhhccHHHHHHHHHHHHcCCCC
Q psy1959          83 ADTKSSSTEEDDEEDVLQVGDKVLALN-KELLHGFSDQCVVHTNDVFKIPEKMTFEHAASLADSYSTAQIVFSRHAKLKE  161 (296)
Q Consensus        83 ~~~~~~~~~~g~~v~~~~~Gd~V~~~~-~~~~g~~~~~~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~  161 (296)
                                |++|+.|++||||+... ....|+|+||+.+|+..++++|+++|+++||++++.+.|||+++.+..++++
T Consensus        73 ----------G~~V~~~~~GdrV~~~~~~~~~G~~AEy~~v~a~~~~~~P~~ls~~eAAal~~~~~TA~~~l~~~~~l~~  142 (326)
T COG0604          73 ----------GSGVTGFKVGDRVAALGGVGRDGGYAEYVVVPADWLVPLPDGLSFEEAAALPLAGLTAWLALFDRAGLKP  142 (326)
T ss_pred             ----------CCCCCCcCCCCEEEEccCCCCCCcceeEEEecHHHceeCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence                      99999999999999985 1125999999999999999999999999999999999999999999999999


Q ss_pred             CcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCcEEEEcCCchhHHHHHHHHhCCCcccEEEECCC
Q psy1959         162 KQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNKVLEVSGGKYANVVFEAVG  241 (296)
Q Consensus       162 g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~g~d~vld~~g  241 (296)
                      |++|||+|++|++|++++|+| +.+|+.++++..+++|.++++++|++.++++++ .++.+.++++++++++|+++|++|
T Consensus       143 g~~VLV~gaaGgVG~~aiQlA-k~~G~~~v~~~~s~~k~~~~~~lGAd~vi~y~~-~~~~~~v~~~t~g~gvDvv~D~vG  220 (326)
T COG0604         143 GETVLVHGAAGGVGSAAIQLA-KALGATVVAVVSSSEKLELLKELGADHVINYRE-EDFVEQVRELTGGKGVDVVLDTVG  220 (326)
T ss_pred             CCEEEEecCCchHHHHHHHHH-HHcCCcEEEEecCHHHHHHHHhcCCCEEEcCCc-ccHHHHHHHHcCCCCceEEEECCC
Confidence            999999999999999999999 678877777777888888999999999999988 779999999999999999999999


Q ss_pred             CccHHHHHHHhhccCceEE
Q psy1959         242 GEDKTDLIRQKGAWAALTF  260 (296)
Q Consensus       242 ~~~~~~~~~~lg~~~g~~~  260 (296)
                      ++.+..+++++ +++|++.
T Consensus       221 ~~~~~~~l~~l-~~~G~lv  238 (326)
T COG0604         221 GDTFAASLAAL-APGGRLV  238 (326)
T ss_pred             HHHHHHHHHHh-ccCCEEE
Confidence            99999999999 7667663

>KOG0024|consensus

Probab=100.00  E-value=3.1e-41  Score=294.21  Aligned_cols=258  Identities=24%  Similarity=0.282  Sum_probs=217.9

Q ss_pred             CCcceEEecCCCCCCCCCCCCCCCCCCCcEEEEeeeeecChhhHHHHcCCCCC--CCCCCCcCCCceeEEEEEEccCCCC
Q psy1959          11 NSSDLLLYNGSGDAKPTLPLVPGFEFSGTIIEKKMMTRINSSDLLLYNGSGDA--KPTLPLVPGFEFSGTVIEVADTKSS   88 (296)
Q Consensus        11 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~evlvkv~~~~i~~~D~~~~~g~~~~--~~~~p~~~G~e~~G~V~~v~~~~~~   88 (296)
                      .+|++++|.++++..-...|.|.|+.++||+|++.++|||++|++++......  ..+.|+++|||.+|+|.++      
T Consensus         3 ~~~~A~vl~g~~di~i~~~p~p~i~~p~eVlv~i~a~GICGSDvHy~~~G~ig~~v~k~PmvlGHEssGiV~ev------   76 (354)
T KOG0024|consen    3 ADNLALVLRGKGDIRIEQRPIPTITDPDEVLVAIKAVGICGSDVHYYTHGRIGDFVVKKPMVLGHESSGIVEEV------   76 (354)
T ss_pred             cccceeEEEccCceeEeeCCCCCCCCCCEEEEEeeeEEecCccchhhccCCcCccccccccccccccccchhhh------
Confidence            47899999999999222445555666669999999999999999999754332  2356999999999999999      


Q ss_pred             CCCCCCCCCCCCCCCEEEEecC--------------------------CCCCcccceEeeeCCceEECCCCCCHHHHhhh
Q psy1959          89 STEEDDEEDVLQVGDKVLALNK--------------------------ELLHGFSDQCVVHTNDVFKIPEKMTFEHAASL  142 (296)
Q Consensus        89 ~~~~g~~v~~~~~Gd~V~~~~~--------------------------~~~g~~~~~~~v~~~~~~~iP~~~~~~~aa~l  142 (296)
                          |++|+++++||||+.-+.                          ..+|++++|++.+++.|+|+|+++|++++| |
T Consensus        77 ----G~~Vk~LkVGDrVaiEpg~~c~~cd~CK~GrYNlCp~m~f~atpp~~G~la~y~~~~~dfc~KLPd~vs~eeGA-l  151 (354)
T KOG0024|consen   77 ----GDEVKHLKVGDRVAIEPGLPCRDCDFCKEGRYNLCPHMVFCATPPVDGTLAEYYVHPADFCYKLPDNVSFEEGA-L  151 (354)
T ss_pred             ----cccccccccCCeEEecCCCccccchhhhCcccccCCccccccCCCcCCceEEEEEechHheeeCCCCCchhhcc-c
Confidence                999999999999995321                          346999999999999999999999999998 7


Q ss_pred             ccHHHHHHHHHHHHcCCCCCcEEEEEcCCCcHHHHHHHHHHHhCCC-EEEEEeCCcchHHHHHhcCCcEEEEcCC---ch
Q psy1959         143 ADSYSTAQIVFSRHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKA-KVIGVCNSEDKTDLIRQKGAWAALTFTN---EK  218 (296)
Q Consensus       143 ~~~~~ta~~~l~~~~~~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~-~Vi~~~~~~~~~~~~~~~g~~~~~~~~~---~~  218 (296)
                      ..+++++|+++ +++++++|++|||+|+ |++|+++...| +.+|+ +|++++..+.|++.++++|++.+.....   ..
T Consensus       152 ~ePLsV~~HAc-r~~~vk~Gs~vLV~GA-GPIGl~t~l~A-ka~GA~~VVi~d~~~~Rle~Ak~~Ga~~~~~~~~~~~~~  228 (354)
T KOG0024|consen  152 IEPLSVGVHAC-RRAGVKKGSKVLVLGA-GPIGLLTGLVA-KAMGASDVVITDLVANRLELAKKFGATVTDPSSHKSSPQ  228 (354)
T ss_pred             ccchhhhhhhh-hhcCcccCCeEEEECC-cHHHHHHHHHH-HHcCCCcEEEeecCHHHHHHHHHhCCeEEeeccccccHH
Confidence            78999999999 8999999999999998 99999999999 77898 9999999999999999999988766544   13


Q ss_pred             hHHHHHHHHhCCCcccEEEECCCC-ccHHHHHHHhhccCceE----------EeecccceeeeeEEeccc-ccceee
Q psy1959         219 SLVNKVLEVSGGKYANVVFEAVGG-EDKTDLIRQKGAWAALT----------FTNEKSLVNKVLEVSGGK-YANVVF  283 (296)
Q Consensus       219 ~~~~~i~~~~~~~g~d~vld~~g~-~~~~~~~~~lg~~~g~~----------~~~~~~~~~k~~~i~g~~-~~~~~~  283 (296)
                      ++.+.+....+.+.+|+.|||+|. ..++.++..+ +.+|..          .|+......|++++.|++ |.+..|
T Consensus       229 ~~~~~v~~~~g~~~~d~~~dCsG~~~~~~aai~a~-r~gGt~vlvg~g~~~~~fpi~~v~~kE~~~~g~fry~~~~y  304 (354)
T KOG0024|consen  229 ELAELVEKALGKKQPDVTFDCSGAEVTIRAAIKAT-RSGGTVVLVGMGAEEIQFPIIDVALKEVDLRGSFRYCNGDY  304 (354)
T ss_pred             HHHHHHHhhccccCCCeEEEccCchHHHHHHHHHh-ccCCEEEEeccCCCccccChhhhhhheeeeeeeeeeccccH
Confidence            444555555555669999999999 5899999999 877766          456678999999999997 777443

>KOG1197|consensus

Probab=100.00  E-value=4.5e-38  Score=265.30  Aligned_cols=231  Identities=27%  Similarity=0.430  Sum_probs=218.1

Q ss_pred             eEeecccCCcceEEecCCCCCCCCCCCCCCCCCCCcEEEEeeeeecChhhHHHHcCCCCCCCCCCCcCCCceeEEEEEEc
Q psy1959           4 DIQCCALNSSDLLLYNGSGDAKPTLPLVPGFEFSGTIIEKKMMTRINSSDLLLYNGSGDAKPTLPLVPGFEFSGTVIEVA   83 (296)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~evlvkv~~~~i~~~D~~~~~g~~~~~~~~p~~~G~e~~G~V~~v~   83 (296)
                      -|....+|+.+.+.|.    ..|.|+|.|+     |++||-.|+|+|..|.+.++|-+. .++.|.+||-|.+|+|+++ 
T Consensus        11 ~i~v~e~Ggydvlk~e----d~pv~~papg-----el~iknka~GlNfid~y~RkGlY~-~~plPytpGmEaaGvVvAv-   79 (336)
T KOG1197|consen   11 CIVVTEFGGYDVLKLE----DRPVPPPAPG-----ELTIKNKACGLNFIDLYFRKGLYD-PAPLPYTPGMEAAGVVVAV-   79 (336)
T ss_pred             EEEEeccCCcceEEEe----eecCCCCCCC-----ceEEeehhcCccHHHHHHhccccC-CCCCCcCCCcccceEEEEe-
Confidence            3567788888888888    4788899999     999999999999999999999997 4788999999999999999 


Q ss_pred             cCCCCCCCCCCCCCCCCCCCEEEEecCCCCCcccceEeeeCCceEECCCCCCHHHHhhhccHHHHHHHHHHHHcCCCCCc
Q psy1959          84 DTKSSSTEEDDEEDVLQVGDKVLALNKELLHGFSDQCVVHTNDVFKIPEKMTFEHAASLADSYSTAQIVFSRHAKLKEKQ  163 (296)
Q Consensus        84 ~~~~~~~~~g~~v~~~~~Gd~V~~~~~~~~g~~~~~~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~  163 (296)
                               |++|+++++||||+...+  .|.|+|+..+|...++++|+.+++..+|++...++|||..+++..++++|+
T Consensus        80 ---------G~gvtdrkvGDrVayl~~--~g~yaee~~vP~~kv~~vpe~i~~k~aaa~llq~lTAy~ll~e~y~vkpGh  148 (336)
T KOG1197|consen   80 ---------GEGVTDRKVGDRVAYLNP--FGAYAEEVTVPSVKVFKVPEAITLKEAAALLLQGLTAYMLLFEAYNVKPGH  148 (336)
T ss_pred             ---------cCCccccccccEEEEecc--chhhheeccccceeeccCCcccCHHHHHHHHHHHHHHHHHHHHhcCCCCCC
Confidence                     999999999999999875  799999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCcEEEEcCCchhHHHHHHHHhCCCcccEEEECCCCc
Q psy1959         164 TVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNKVLEVSGGKYANVVFEAVGGE  243 (296)
Q Consensus       164 ~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~g~d~vld~~g~~  243 (296)
                      +||++.+.|++|++++|++ +..|+.+|.+..+.+|.+.+++.|+.+.++++. +++.+++.+.++++|+|+++|.+|.+
T Consensus       149 tVlvhaAAGGVGlll~Ql~-ra~~a~tI~~asTaeK~~~akenG~~h~I~y~~-eD~v~~V~kiTngKGVd~vyDsvG~d  226 (336)
T KOG1197|consen  149 TVLVHAAAGGVGLLLCQLL-RAVGAHTIATASTAEKHEIAKENGAEHPIDYST-EDYVDEVKKITNGKGVDAVYDSVGKD  226 (336)
T ss_pred             EEEEEeccccHHHHHHHHH-HhcCcEEEEEeccHHHHHHHHhcCCcceeeccc-hhHHHHHHhccCCCCceeeeccccch
Confidence            9999999999999999999 789999999999999999999999999999998 99999999999999999999999999


Q ss_pred             cHHHHHHHhhccCceE
Q psy1959         244 DKTDLIRQKGAWAALT  259 (296)
Q Consensus       244 ~~~~~~~~lg~~~g~~  259 (296)
                      ++..++.+| ++.|.+
T Consensus       227 t~~~sl~~L-k~~G~m  241 (336)
T KOG1197|consen  227 TFAKSLAAL-KPMGKM  241 (336)
T ss_pred             hhHHHHHHh-ccCceE
Confidence            999999999 766655

>KOG0023|consensus

Probab=100.00  E-value=1e-37  Score=271.68  Aligned_cols=244  Identities=21%  Similarity=0.233  Sum_probs=209.5

Q ss_pred             CcceEEecCCCCC-------CCCCCCCCCCCCCCcEEEEeeeeecChhhHHHHcCCCCCCCCCCCcCCCceeEEEEEEcc
Q psy1959          12 SSDLLLYNGSGDA-------KPTLPLVPGFEFSGTIIEKKMMTRINSSDLLLYNGSGDAKPTLPLVPGFEFSGTVIEVAD   84 (296)
Q Consensus        12 ~~~~~~~~~~~~~-------~~~p~~~~~~~~~~evlvkv~~~~i~~~D~~~~~g~~~~~~~~p~~~G~e~~G~V~~v~~   84 (296)
                      +..++.+..+...       +++|+|.++     ||+|||+|||||++|++.+.|.++. ..+|+++|||.+|+|+++  
T Consensus         9 k~~g~~~~~~~G~l~p~~~~~~~~~~g~~-----dv~vkI~~cGIChsDlH~~~gdwg~-s~~PlV~GHEiaG~Vvkv--   80 (360)
T KOG0023|consen    9 KQFGWAARDPSGVLSPEVFSFPVREPGEN-----DVLVKIEYCGVCHSDLHAWKGDWGL-SKYPLVPGHEIAGVVVKV--   80 (360)
T ss_pred             hhEEEEEECCCCCCCcceeEcCCCCCCCC-----cEEEEEEEEeccchhHHHhhccCCc-ccCCccCCceeeEEEEEE--
Confidence            4456666665552       678888888     9999999999999999999999998 889999999999999999  


Q ss_pred             CCCCCCCCCCCCCCCCCCCEEEEe-------------------cC--------------CCCCcccceEeeeCCceEECC
Q psy1959          85 TKSSSTEEDDEEDVLQVGDKVLAL-------------------NK--------------ELLHGFSDQCVVHTNDVFKIP  131 (296)
Q Consensus        85 ~~~~~~~~g~~v~~~~~Gd~V~~~-------------------~~--------------~~~g~~~~~~~v~~~~~~~iP  131 (296)
                              |++|++|++||||-.=                   ++              -..|+|++|+++++..+++||
T Consensus        81 --------Gs~V~~~kiGD~vGVg~~~~sC~~CE~C~~~~E~yCpk~~~t~~g~~~DGt~~~ggf~~~~~v~~~~a~kIP  152 (360)
T KOG0023|consen   81 --------GSNVTGFKIGDRVGVGWLNGSCLSCEYCKSGNENYCPKMHFTYNGVYHDGTITQGGFQEYAVVDEVFAIKIP  152 (360)
T ss_pred             --------CCCcccccccCeeeeeEEeccccCccccccCCcccCCceeEeccccccCCCCccCccceeEEEeeeeEEECC
Confidence                    9999999999999730                   00              013669999999999999999


Q ss_pred             CCCCHHHHhhhccHHHHHHHHHHHHcCCCCCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcc-hHHHHHhcCCcE
Q psy1959         132 EKMTFEHAASLADSYSTAQIVFSRHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSED-KTDLIRQKGAWA  210 (296)
Q Consensus       132 ~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~-~~~~~~~~g~~~  210 (296)
                      ++++++.||.|.++..|.|..+ ...++.||+++.|.|+ |++|.+++|+| +++|.+|++++++.+ |.+.++.+|++.
T Consensus       153 ~~~pl~~aAPlLCaGITvYspL-k~~g~~pG~~vgI~Gl-GGLGh~aVq~A-KAMG~rV~vis~~~~kkeea~~~LGAd~  229 (360)
T KOG0023|consen  153 ENLPLASAAPLLCAGITVYSPL-KRSGLGPGKWVGIVGL-GGLGHMAVQYA-KAMGMRVTVISTSSKKKEEAIKSLGADV  229 (360)
T ss_pred             CCCChhhccchhhcceEEeehh-HHcCCCCCcEEEEecC-cccchHHHHHH-HHhCcEEEEEeCCchhHHHHHHhcCcce
Confidence            9999999999999999999999 6789999999999998 66999999999 889999999999885 555666799999


Q ss_pred             EEEcCCchhHHHHHHHHhCCCcccEEEECCCCccHHHHHHHhhccCceE----------EeecccceeeeeEEeccc
Q psy1959         211 ALTFTNEKSLVNKVLEVSGGKYANVVFEAVGGEDKTDLIRQKGAWAALT----------FTNEKSLVNKVLEVSGGK  277 (296)
Q Consensus       211 ~~~~~~~~~~~~~i~~~~~~~g~d~vld~~g~~~~~~~~~~lg~~~g~~----------~~~~~~~~~k~~~i~g~~  277 (296)
                      .++..++.++.+.+...+++ ++|.+.+. ....++.++.++ +.+|.+          .++...++.+.+.|.||.
T Consensus       230 fv~~~~d~d~~~~~~~~~dg-~~~~v~~~-a~~~~~~~~~~l-k~~Gt~V~vg~p~~~~~~~~~~lil~~~~I~GS~  303 (360)
T KOG0023|consen  230 FVDSTEDPDIMKAIMKTTDG-GIDTVSNL-AEHALEPLLGLL-KVNGTLVLVGLPEKPLKLDTFPLILGRKSIKGSI  303 (360)
T ss_pred             eEEecCCHHHHHHHHHhhcC-cceeeeec-cccchHHHHHHh-hcCCEEEEEeCcCCcccccchhhhcccEEEEeec
Confidence            98887548999999988864 77777766 446889999999 777766          345568899999999987

>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]

Probab=100.00  E-value=1.2e-36  Score=267.63  Aligned_cols=245  Identities=25%  Similarity=0.292  Sum_probs=214.9

Q ss_pred             CcceEEecCCCCC-----CCCCCCCCCCCCCCcEEEEeeeeecChhhHHHHcCCCCCCCCCCCcCCCceeEEEEEEccCC
Q psy1959          12 SSDLLLYNGSGDA-----KPTLPLVPGFEFSGTIIEKKMMTRINSSDLLLYNGSGDAKPTLPLVPGFEFSGTVIEVADTK   86 (296)
Q Consensus        12 ~~~~~~~~~~~~~-----~~~p~~~~~~~~~~evlvkv~~~~i~~~D~~~~~g~~~~~~~~p~~~G~e~~G~V~~v~~~~   86 (296)
                      ++++.+.++++++     +..++|+++     |||||+.++|+|++|...+.|..+..  +|.++|||.+|+|++|    
T Consensus         2 k~~aAV~~~~~~Pl~i~ei~l~~P~~g-----EVlVri~AtGVCHTD~~~~~G~~p~~--~P~vLGHEgAGiVe~V----   70 (366)
T COG1062           2 KTRAAVAREAGKPLEIEEVDLDPPRAG-----EVLVRITATGVCHTDAHTLSGDDPEG--FPAVLGHEGAGIVEAV----   70 (366)
T ss_pred             CceEeeeecCCCCeEEEEEecCCCCCC-----eEEEEEEEeeccccchhhhcCCCCCC--CceecccccccEEEEe----
Confidence            4678888888888     667889999     99999999999999999999998863  8999999999999999    


Q ss_pred             CCCCCCCCCCCCCCCCCEEEEecC--------------------------------------------CCC--CcccceE
Q psy1959          87 SSSTEEDDEEDVLQVGDKVLALNK--------------------------------------------ELL--HGFSDQC  120 (296)
Q Consensus        87 ~~~~~~g~~v~~~~~Gd~V~~~~~--------------------------------------------~~~--g~~~~~~  120 (296)
                            |++|+++++||+|+....                                            ++.  ++|+||.
T Consensus        71 ------G~gVt~vkpGDhVI~~f~p~CG~C~~C~sGk~nlC~~~~~~~~kG~m~dGttrls~~~~~~~h~lG~stFa~y~  144 (366)
T COG1062          71 ------GEGVTSVKPGDHVILLFTPECGQCKFCLSGKPNLCEAIRATQGKGTMPDGTTRLSGNGVPVYHYLGCSTFAEYT  144 (366)
T ss_pred             ------cCCccccCCCCEEEEcccCCCCCCchhhCCCcccccchhhhcccccccCCceeeecCCcceeeeeccccchhhe
Confidence                  999999999999995321                                            122  4899999


Q ss_pred             eeeCCceEECCCCCCHHHHhhhccHHHHHHHHHHHHcCCCCCcEEEEEcCCCcHHHHHHHHHHHhCCC-EEEEEeCCcch
Q psy1959         121 VVHTNDVFKIPEKMTFEHAASLADSYSTAQIVFSRHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKA-KVIGVCNSEDK  199 (296)
Q Consensus       121 ~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~-~Vi~~~~~~~~  199 (296)
                      +++...++|++++.+++.++.|.+..+|.+.+..+.+++++|+++.|+|. |++|++++|-| +..|+ ++|+++.+++|
T Consensus       145 vv~~~s~vki~~~~p~~~a~llGCgV~TG~Gav~nta~v~~G~tvaV~Gl-GgVGlaaI~gA-~~agA~~IiAvD~~~~K  222 (366)
T COG1062         145 VVHEISLVKIDPDAPLEKACLLGCGVTTGIGAVVNTAKVEPGDTVAVFGL-GGVGLAAIQGA-KAAGAGRIIAVDINPEK  222 (366)
T ss_pred             eecccceEECCCCCCccceEEEeeeeccChHHhhhcccCCCCCeEEEEec-cHhHHHHHHHH-HHcCCceEEEEeCCHHH
Confidence            99999999999999999999999999999999889999999999999998 99999999999 67788 99999999999


Q ss_pred             HHHHHhcCCcEEEEcCCchhHHHHHHHHhCCCcccEEEECCCC-ccHHHHHHHhhccCceE-----------Eeecccce
Q psy1959         200 TDLIRQKGAWAALTFTNEKSLVNKVLEVSGGKYANVVFEAVGG-EDKTDLIRQKGAWAALT-----------FTNEKSLV  267 (296)
Q Consensus       200 ~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~g~d~vld~~g~-~~~~~~~~~lg~~~g~~-----------~~~~~~~~  267 (296)
                      +++++++|++++++..+..+..+.+.+++++ |+|.+|||+|+ +.++.++++..+|+..+           .++..+++
T Consensus       223 l~~A~~fGAT~~vn~~~~~~vv~~i~~~T~g-G~d~~~e~~G~~~~~~~al~~~~~~G~~v~iGv~~~~~~i~~~~~~lv  301 (366)
T COG1062         223 LELAKKFGATHFVNPKEVDDVVEAIVELTDG-GADYAFECVGNVEVMRQALEATHRGGTSVIIGVAGAGQEISTRPFQLV  301 (366)
T ss_pred             HHHHHhcCCceeecchhhhhHHHHHHHhcCC-CCCEEEEccCCHHHHHHHHHHHhcCCeEEEEecCCCCceeecChHHee
Confidence            9999999999999998733789999999976 99999999999 89999999995544333           23344555


Q ss_pred             eeeeEEeccc
Q psy1959         268 NKVLEVSGGK  277 (296)
Q Consensus       268 ~k~~~i~g~~  277 (296)
                      .. ..++|+.
T Consensus       302 ~g-r~~~Gs~  310 (366)
T COG1062         302 TG-RVWKGSA  310 (366)
T ss_pred             cc-ceEEEEe
Confidence            55 6777765

>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase)

Probab=100.00  E-value=8.9e-36  Score=276.47  Aligned_cols=233  Identities=29%  Similarity=0.337  Sum_probs=201.5

Q ss_pred             CCCCCCCCCCCCCCcEEEEeeeeecChhhHHHHcCCCCCCCCCCCcCCCceeEEEEEEccCCCCCCCCCCCCCCCCCCCE
Q psy1959          25 KPTLPLVPGFEFSGTIIEKKMMTRINSSDLLLYNGSGDAKPTLPLVPGFEFSGTVIEVADTKSSSTEEDDEEDVLQVGDK  104 (296)
Q Consensus        25 ~~~p~~~~~~~~~~evlvkv~~~~i~~~D~~~~~g~~~~~~~~p~~~G~e~~G~V~~v~~~~~~~~~~g~~v~~~~~Gd~  104 (296)
                      .|.|.|.++     ||+|||.+++||++|++.+.|.++  ..+|.++|||++|+|+++          |+++.++++|||
T Consensus        26 ~~~P~~~~~-----evlV~v~~~gi~~~D~~~~~g~~~--~~~p~i~GhE~~G~V~~v----------G~~v~~~~~Gdr   88 (371)
T cd08281          26 VELDPPGPG-----EVLVKIAAAGLCHSDLSVINGDRP--RPLPMALGHEAAGVVVEV----------GEGVTDLEVGDH   88 (371)
T ss_pred             eecCCCCCC-----eEEEEEEEEeeCccchHhhcCCCC--CCCCccCCccceeEEEEe----------CCCCCcCCCCCE
Confidence            677788888     999999999999999999998754  346899999999999999          999999999999


Q ss_pred             EEEecCC----------------------------------------------CCCcccceEeeeCCceEECCCCCCHHH
Q psy1959         105 VLALNKE----------------------------------------------LLHGFSDQCVVHTNDVFKIPEKMTFEH  138 (296)
Q Consensus       105 V~~~~~~----------------------------------------------~~g~~~~~~~v~~~~~~~iP~~~~~~~  138 (296)
                      |++....                                              ..|+|+||+.+++..++++|+++++++
T Consensus        89 V~~~~~~~cg~c~~c~~g~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~g~G~~aey~~v~~~~~~~lP~~l~~~~  168 (371)
T cd08281          89 VVLVFVPSCGHCRPCAEGRPALCEPGAAANGAGTLLSGGRRLRLRGGEINHHLGVSAFAEYAVVSRRSVVKIDKDVPLEI  168 (371)
T ss_pred             EEEccCCCCCCCccccCCCcccccCccccccccccccCcccccccCcccccccCcccceeeEEecccceEECCCCCChHH
Confidence            9863210                                              026899999999999999999999999


Q ss_pred             HhhhccHHHHHHHHHHHHcCCCCCcEEEEEcCCCcHHHHHHHHHHHhCCC-EEEEEeCCcchHHHHHhcCCcEEEEcCCc
Q psy1959         139 AASLADSYSTAQIVFSRHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKA-KVIGVCNSEDKTDLIRQKGAWAALTFTNE  217 (296)
Q Consensus       139 aa~l~~~~~ta~~~l~~~~~~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~-~Vi~~~~~~~~~~~~~~~g~~~~~~~~~~  217 (296)
                      ++.+..++.+||+++.+.+++++|++|+|.|+ |++|++++|+| +..|+ +|++++.+++|++.++++|++.++++.+ 
T Consensus       169 aa~~~~~~~ta~~~~~~~~~i~~g~~VlV~G~-G~vG~~a~~la-k~~G~~~Vi~~~~~~~r~~~a~~~Ga~~~i~~~~-  245 (371)
T cd08281         169 AALFGCAVLTGVGAVVNTAGVRPGQSVAVVGL-GGVGLSALLGA-VAAGASQVVAVDLNEDKLALARELGATATVNAGD-  245 (371)
T ss_pred             hhhhcchHHHHHHHHHhccCCCCCCEEEEECC-CHHHHHHHHHH-HHcCCCcEEEEcCCHHHHHHHHHcCCceEeCCCc-
Confidence            99999999999999878889999999999996 99999999999 67899 6999999999999999999998888876 


Q ss_pred             hhHHHHHHHHhCCCcccEEEECCCC-ccHHHHHHHhhccCceEEe------------ecccceeeeeEEeccccc
Q psy1959         218 KSLVNKVLEVSGGKYANVVFEAVGG-EDKTDLIRQKGAWAALTFT------------NEKSLVNKVLEVSGGKYA  279 (296)
Q Consensus       218 ~~~~~~i~~~~~~~g~d~vld~~g~-~~~~~~~~~lg~~~g~~~~------------~~~~~~~k~~~i~g~~~~  279 (296)
                      .++.+.+++.+++ ++|++|||+|. +.+..+++++ +++|++..            +...++.|+++|.|++..
T Consensus       246 ~~~~~~i~~~~~~-g~d~vid~~G~~~~~~~~~~~l-~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~~i~g~~~~  318 (371)
T cd08281         246 PNAVEQVRELTGG-GVDYAFEMAGSVPALETAYEIT-RRGGTTVTAGLPDPEARLSVPALSLVAEERTLKGSYMG  318 (371)
T ss_pred             hhHHHHHHHHhCC-CCCEEEECCCChHHHHHHHHHH-hcCCEEEEEccCCCCceeeecHHHHhhcCCEEEEEecC
Confidence            6788888888766 89999999997 6899999999 77776632            122356688899887643

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd

>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like

Probab=100.00  E-value=1.2e-35  Score=271.99  Aligned_cols=244  Identities=23%  Similarity=0.320  Sum_probs=206.4

Q ss_pred             cceEEecCCCCC----CCCCCCCCCCCCCCcEEEEeeeeecChhhHHHHcCCCCCCCCCCCcCCCceeEEEEEEccCCCC
Q psy1959          13 SDLLLYNGSGDA----KPTLPLVPGFEFSGTIIEKKMMTRINSSDLLLYNGSGDAKPTLPLVPGFEFSGTVIEVADTKSS   88 (296)
Q Consensus        13 ~~~~~~~~~~~~----~~~p~~~~~~~~~~evlvkv~~~~i~~~D~~~~~g~~~~~~~~p~~~G~e~~G~V~~v~~~~~~   88 (296)
                      |+++++.+++..    .|.|.|.++     ||+||+.++++|++|+..+.+.+.....+|.++|||++|+|+++      
T Consensus         1 mka~~~~~~~~l~~~~~~~p~~~~~-----evlV~v~~~gi~~~D~~~~~~~~~~~~~~p~i~G~e~~G~V~~v------   69 (339)
T cd08239           1 MRGAVFPGDRTVELREFPVPVPGPG-----EVLLRVKASGLCGSDLHYYYHGHRAPAYQGVIPGHEPAGVVVAV------   69 (339)
T ss_pred             CeEEEEecCCceEEEecCCCCCCCC-----eEEEEEEEEEeccccHHHHcCCCCccCCCCceeccCceEEEEEE------
Confidence            678888876655    677888888     99999999999999999987764322345889999999999999      


Q ss_pred             CCCCCCCCCCCCCCCEEEEecC--------------------------CCCCcccceEeeeCCceEECCCCCCHHHHhhh
Q psy1959          89 STEEDDEEDVLQVGDKVLALNK--------------------------ELLHGFSDQCVVHTNDVFKIPEKMTFEHAASL  142 (296)
Q Consensus        89 ~~~~g~~v~~~~~Gd~V~~~~~--------------------------~~~g~~~~~~~v~~~~~~~iP~~~~~~~aa~l  142 (296)
                          |++++.+++||+|+....                          +..|+|+||+.++.+.++++|+++++++++.+
T Consensus        70 ----G~~v~~~~~Gd~V~~~~~~~c~~c~~c~~g~~~~c~~~~~~~g~~~~G~~ae~~~v~~~~~~~~P~~~~~~~aa~l  145 (339)
T cd08239          70 ----GPGVTHFRVGDRVMVYHYVGCGACRNCRRGWMQLCTSKRAAYGWNRDGGHAEYMLVPEKTLIPLPDDLSFADGALL  145 (339)
T ss_pred             ----CCCCccCCCCCEEEECCCCCCCCChhhhCcCcccCcCcccccccCCCCcceeEEEechHHeEECCCCCCHHHhhhh
Confidence                999999999999987531                          12589999999999999999999999999999


Q ss_pred             ccHHHHHHHHHHHHcCCCCCcEEEEEcCCCcHHHHHHHHHHHhCCCE-EEEEeCCcchHHHHHhcCCcEEEEcCCchhHH
Q psy1959         143 ADSYSTAQIVFSRHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKAK-VIGVCNSEDKTDLIRQKGAWAALTFTNEKSLV  221 (296)
Q Consensus       143 ~~~~~ta~~~l~~~~~~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~~-Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  221 (296)
                      ++++.|||+++ ...++++|++|+|+|+ |++|++++|+| +.+|++ |+++++++++.+.++++|++.++++++ .+ .
T Consensus       146 ~~~~~ta~~~l-~~~~~~~g~~vlV~G~-G~vG~~~~~~a-k~~G~~~vi~~~~~~~~~~~~~~~ga~~~i~~~~-~~-~  220 (339)
T cd08239         146 LCGIGTAYHAL-RRVGVSGRDTVLVVGA-GPVGLGALMLA-RALGAEDVIGVDPSPERLELAKALGADFVINSGQ-DD-V  220 (339)
T ss_pred             cchHHHHHHHH-HhcCCCCCCEEEEECC-CHHHHHHHHHH-HHcCCCEEEEECCCHHHHHHHHHhCCCEEEcCCc-ch-H
Confidence            99999999999 5678899999999986 99999999999 678998 999999999999999999998888876 45 6


Q ss_pred             HHHHHHhCCCcccEEEECCCCc-cHHHHHHHhhccCceEEee----------cccceeeeeEEeccc
Q psy1959         222 NKVLEVSGGKYANVVFEAVGGE-DKTDLIRQKGAWAALTFTN----------EKSLVNKVLEVSGGK  277 (296)
Q Consensus       222 ~~i~~~~~~~g~d~vld~~g~~-~~~~~~~~lg~~~g~~~~~----------~~~~~~k~~~i~g~~  277 (296)
                      +.+.+.++++++|++||++|+. .+..+++++ +.+|++.+-          ...++.|+++|.|++
T Consensus       221 ~~~~~~~~~~~~d~vid~~g~~~~~~~~~~~l-~~~G~~v~~g~~~~~~~~~~~~~~~~~~~i~g~~  286 (339)
T cd08239         221 QEIRELTSGAGADVAIECSGNTAARRLALEAV-RPWGRLVLVGEGGELTIEVSNDLIRKQRTLIGSW  286 (339)
T ss_pred             HHHHHHhCCCCCCEEEECCCCHHHHHHHHHHh-hcCCEEEEEcCCCCcccCcHHHHHhCCCEEEEEe
Confidence            6777777777899999999995 568899999 777776421          123556778888766

MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at

>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase

Probab=100.00  E-value=1.3e-35  Score=274.17  Aligned_cols=245  Identities=20%  Similarity=0.217  Sum_probs=210.2

Q ss_pred             CcceEEecCCCCC-----CCCCCCCCCCCCCCcEEEEeeeeecChhhHHHHcCCCCCCCCCCCcCCCceeEEEEEEccCC
Q psy1959          12 SSDLLLYNGSGDA-----KPTLPLVPGFEFSGTIIEKKMMTRINSSDLLLYNGSGDAKPTLPLVPGFEFSGTVIEVADTK   86 (296)
Q Consensus        12 ~~~~~~~~~~~~~-----~~~p~~~~~~~~~~evlvkv~~~~i~~~D~~~~~g~~~~~~~~p~~~G~e~~G~V~~v~~~~   86 (296)
                      +||++++++++..     .|.|.|.++     ||+|||.++++|++|++.+.|...  ..+|.++|||++|+|+++    
T Consensus         1 ~mka~~~~~~~~~~~~~~~~~p~~~~~-----evlV~v~~~gi~~~D~~~~~g~~~--~~~p~i~G~e~~G~V~~v----   69 (358)
T TIGR03451         1 TVRGVIARSKGAPVELETIVVPDPGPG-----EVIVDIQACGVCHTDLHYREGGIN--DEFPFLLGHEAAGVVEAV----   69 (358)
T ss_pred             CcEEEEEccCCCCCEEEEEECCCCCCC-----eEEEEEEEEeecHHHHHHhcCCcc--ccCCcccccceEEEEEEe----
Confidence            5889999988764     677888888     999999999999999999988653  346899999999999999    


Q ss_pred             CCCCCCCCCCCCCCCCCEEEEecC--------------------------------------CCCCcccceEeeeCCceE
Q psy1959          87 SSSTEEDDEEDVLQVGDKVLALNK--------------------------------------ELLHGFSDQCVVHTNDVF  128 (296)
Q Consensus        87 ~~~~~~g~~v~~~~~Gd~V~~~~~--------------------------------------~~~g~~~~~~~v~~~~~~  128 (296)
                            |+++.+|++||+|++...                                      ...|+|+||+.+++++++
T Consensus        70 ------G~~v~~~~~GdrV~~~~~~~cg~c~~c~~g~~~~c~~~~~~~~~~~~~~g~~~~~~~~~G~~aey~~v~~~~~~  143 (358)
T TIGR03451        70 ------GEGVTDVAPGDYVVLNWRAVCGQCRACKRGRPWYCFDTHNATQKMTLTDGTELSPALGIGAFAEKTLVHAGQCT  143 (358)
T ss_pred             ------CCCCcccCCCCEEEEccCCCCCCChHHhCcCcccCcCccccccccccccCcccccccccccccceEEEehhheE
Confidence                  999999999999986210                                      014899999999999999


Q ss_pred             ECCCCCCHHHHhhhccHHHHHHHHHHHHcCCCCCcEEEEEcCCCcHHHHHHHHHHHhCCC-EEEEEeCCcchHHHHHhcC
Q psy1959         129 KIPEKMTFEHAASLADSYSTAQIVFSRHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKA-KVIGVCNSEDKTDLIRQKG  207 (296)
Q Consensus       129 ~iP~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~-~Vi~~~~~~~~~~~~~~~g  207 (296)
                      ++|+++++++++.+++++.+||+++.+.+++++|++|+|+|+ |++|++++|+| +..|+ +|+++++++++.++++++|
T Consensus       144 ~ip~~~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~VlV~G~-g~vG~~a~~~a-k~~G~~~Vi~~~~~~~~~~~~~~~G  221 (358)
T TIGR03451       144 KVDPAADPAAAGLLGCGVMAGLGAAVNTGGVKRGDSVAVIGC-GGVGDAAIAGA-ALAGASKIIAVDIDDRKLEWAREFG  221 (358)
T ss_pred             ECCCCCChhHhhhhcccchhhHHHHHhccCCCCCCEEEEECC-CHHHHHHHHHH-HHcCCCeEEEEcCCHHHHHHHHHcC
Confidence            999999999999999899999998878889999999999986 99999999999 67899 5999999999999999999


Q ss_pred             CcEEEEcCCchhHHHHHHHHhCCCcccEEEECCCC-ccHHHHHHHhhccCceEEee------------cccceeeeeEEe
Q psy1959         208 AWAALTFTNEKSLVNKVLEVSGGKYANVVFEAVGG-EDKTDLIRQKGAWAALTFTN------------EKSLVNKVLEVS  274 (296)
Q Consensus       208 ~~~~~~~~~~~~~~~~i~~~~~~~g~d~vld~~g~-~~~~~~~~~lg~~~g~~~~~------------~~~~~~k~~~i~  274 (296)
                      ++.++++++ .++.+.+.+.+++.++|++||++|+ +.+..+++++ +.+|++.+-            ...++.|++++.
T Consensus       222 a~~~i~~~~-~~~~~~i~~~~~~~g~d~vid~~g~~~~~~~~~~~~-~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~~i~  299 (358)
T TIGR03451       222 ATHTVNSSG-TDPVEAIRALTGGFGADVVIDAVGRPETYKQAFYAR-DLAGTVVLVGVPTPDMTLELPLLDVFGRGGALK  299 (358)
T ss_pred             CceEEcCCC-cCHHHHHHHHhCCCCCCEEEECCCCHHHHHHHHHHh-ccCCEEEEECCCCCCceeeccHHHHhhcCCEEE
Confidence            998888876 6778888888877789999999998 6899999999 777766321            123555677777


Q ss_pred             ccc
Q psy1959         275 GGK  277 (296)
Q Consensus       275 g~~  277 (296)
                      +++
T Consensus       300 ~~~  302 (358)
T TIGR03451       300 SSW  302 (358)
T ss_pred             Eee
Confidence            764

Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.

>PLN02740 Alcohol dehydrogenase-like

Probab=100.00  E-value=3.6e-35  Score=273.36  Aligned_cols=248  Identities=21%  Similarity=0.275  Sum_probs=208.6

Q ss_pred             CcceEEecCCCCC-----CCCCCCCCCCCCCCcEEEEeeeeecChhhHHHHcCCCCCCCCCCCcCCCceeEEEEEEccCC
Q psy1959          12 SSDLLLYNGSGDA-----KPTLPLVPGFEFSGTIIEKKMMTRINSSDLLLYNGSGDAKPTLPLVPGFEFSGTVIEVADTK   86 (296)
Q Consensus        12 ~~~~~~~~~~~~~-----~~~p~~~~~~~~~~evlvkv~~~~i~~~D~~~~~g~~~~~~~~p~~~G~e~~G~V~~v~~~~   86 (296)
                      .|++++++++++.     .|.|.|.++     ||+|||.+++||++|++.+.|.+.....+|.++|||++|+|+++    
T Consensus        10 ~mka~~~~~~~~~~~~~e~~~P~~~~~-----eVlV~v~~~gic~sD~~~~~g~~~~~~~~p~i~GhE~~G~V~~v----   80 (381)
T PLN02740         10 TCKAAVAWGPGEPLVMEEIRVDPPQKM-----EVRIKILYTSICHTDLSAWKGENEAQRAYPRILGHEAAGIVESV----   80 (381)
T ss_pred             eeEEEEEecCCCCcEEEEeeCCCCCCC-----eEEEEEEEEecChhhHHHhCCCCcccCCCCccccccceEEEEEe----
Confidence            5999999988753     577778888     99999999999999999999876544567999999999999999    


Q ss_pred             CCCCCCCCCCCCCCCCCEEEEecCC-------------------------------------------------CCCccc
Q psy1959          87 SSSTEEDDEEDVLQVGDKVLALNKE-------------------------------------------------LLHGFS  117 (296)
Q Consensus        87 ~~~~~~g~~v~~~~~Gd~V~~~~~~-------------------------------------------------~~g~~~  117 (296)
                            |+++..+++||||++....                                                 ..|+|+
T Consensus        81 ------G~~v~~~~vGdrV~~~~~~~cg~C~~c~~g~~~~C~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~G~~a  154 (381)
T PLN02740         81 ------GEGVEDLKAGDHVIPIFNGECGDCRYCKRDKTNLCETYRVDPFKSVMVNDGKTRFSTKGDGQPIYHFLNTSTFT  154 (381)
T ss_pred             ------CCCCCcCCCCCEEEecCCCCCCCChhhcCCCcccccCccccccccccccCCCcccccccCCCcccccccCccce
Confidence                  9999999999999874310                                                 148999


Q ss_pred             ceEeeeCCceEECCCCCCHHHHhhhccHHHHHHHHHHHHcCCCCCcEEEEEcCCCcHHHHHHHHHHHhCCC-EEEEEeCC
Q psy1959         118 DQCVVHTNDVFKIPEKMTFEHAASLADSYSTAQIVFSRHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKA-KVIGVCNS  196 (296)
Q Consensus       118 ~~~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~-~Vi~~~~~  196 (296)
                      ||++++.+.++++|++++.++++.+.+++.+||+++.+.+++++|++|+|+|+ |++|++++|+| +.+|+ +|++++++
T Consensus       155 ey~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~VlV~G~-G~vG~~a~q~a-k~~G~~~Vi~~~~~  232 (381)
T PLN02740        155 EYTVLDSACVVKIDPNAPLKKMSLLSCGVSTGVGAAWNTANVQAGSSVAIFGL-GAVGLAVAEGA-RARGASKIIGVDIN  232 (381)
T ss_pred             eEEEEehHHeEECCCCCCHHHhhhhcccchhhHHHHHhccCCCCCCEEEEECC-CHHHHHHHHHH-HHCCCCcEEEEcCC
Confidence            99999999999999999999999999999999998877889999999999996 99999999999 67899 69999999


Q ss_pred             cchHHHHHhcCCcEEEEcCCc-hhHHHHHHHHhCCCcccEEEECCCC-ccHHHHHHHhhccC-ceEEeec----------
Q psy1959         197 EDKTDLIRQKGAWAALTFTNE-KSLVNKVLEVSGGKYANVVFEAVGG-EDKTDLIRQKGAWA-ALTFTNE----------  263 (296)
Q Consensus       197 ~~~~~~~~~~g~~~~~~~~~~-~~~~~~i~~~~~~~g~d~vld~~g~-~~~~~~~~~lg~~~-g~~~~~~----------  263 (296)
                      ++|++.++++|++.++++++. .++.+.+.+.+++ ++|++||++|+ ..+..+++++ +.+ |++.+-.          
T Consensus       233 ~~r~~~a~~~Ga~~~i~~~~~~~~~~~~v~~~~~~-g~dvvid~~G~~~~~~~a~~~~-~~g~G~~v~~G~~~~~~~~~~  310 (381)
T PLN02740        233 PEKFEKGKEMGITDFINPKDSDKPVHERIREMTGG-GVDYSFECAGNVEVLREAFLST-HDGWGLTVLLGIHPTPKMLPL  310 (381)
T ss_pred             hHHHHHHHHcCCcEEEecccccchHHHHHHHHhCC-CCCEEEECCCChHHHHHHHHhh-hcCCCEEEEEccCCCCceecc
Confidence            999999999999888887642 2477778888766 89999999998 6889999999 664 6553211          


Q ss_pred             ccc-eeeeeEEecccc
Q psy1959         264 KSL-VNKVLEVSGGKY  278 (296)
Q Consensus       264 ~~~-~~k~~~i~g~~~  278 (296)
                      ... +.++++|.|+..
T Consensus       311 ~~~~~~~~~~i~g~~~  326 (381)
T PLN02740        311 HPMELFDGRSITGSVF  326 (381)
T ss_pred             cHHHHhcCCeEEEEec
Confidence            001 236778877653

>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase

Probab=100.00  E-value=2.7e-34  Score=266.29  Aligned_cols=227  Identities=22%  Similarity=0.293  Sum_probs=196.2

Q ss_pred             cceEEecCCCCC-----CCCCCCCCCCCCCCcEEEEeeeeecChhhHHHHcCCCCCCCCCCCcCCCceeEEEEEEccCCC
Q psy1959          13 SDLLLYNGSGDA-----KPTLPLVPGFEFSGTIIEKKMMTRINSSDLLLYNGSGDAKPTLPLVPGFEFSGTVIEVADTKS   87 (296)
Q Consensus        13 ~~~~~~~~~~~~-----~~~p~~~~~~~~~~evlvkv~~~~i~~~D~~~~~g~~~~~~~~p~~~G~e~~G~V~~v~~~~~   87 (296)
                      |+++++..++..     .|.|.|.++     ||+|||.+++||++|++.+.|.++. ..+|.++|||++|+|+++     
T Consensus         2 ~~a~~~~~~~~~l~~~~~~~P~~~~~-----eVlI~v~a~gi~~sD~~~~~g~~~~-~~~p~i~GhE~~G~V~~v-----   70 (368)
T TIGR02818         2 SRAAVAWAAGQPLKIEEVDVEMPQKG-----EVLVRIVATGVCHTDAFTLSGADPE-GVFPVILGHEGAGIVEAV-----   70 (368)
T ss_pred             ceEEEEecCCCCeEEEEecCCCCCCC-----eEEEEEEEecccHHHHHHhcCCCCC-CCCCeeeccccEEEEEEE-----
Confidence            677777766543     577778888     9999999999999999999887643 357899999999999999     


Q ss_pred             CCCCCCCCCCCCCCCCEEEEecCC----------------------------------------------CCCcccceEe
Q psy1959          88 SSTEEDDEEDVLQVGDKVLALNKE----------------------------------------------LLHGFSDQCV  121 (296)
Q Consensus        88 ~~~~~g~~v~~~~~Gd~V~~~~~~----------------------------------------------~~g~~~~~~~  121 (296)
                           |++++++++||||+.....                                              ..|+|+||++
T Consensus        71 -----G~~v~~~~~GdrV~~~~~~~cg~C~~c~~g~~~~C~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~G~~aey~~  145 (368)
T TIGR02818        71 -----GEGVTSVKVGDHVIPLYTAECGECKFCLSGKTNLCVAVRETQGKGLMPDGTSRFSKDGQPIYHYMGCSTFSEYTV  145 (368)
T ss_pred             -----CCCCccCCCCCEEEEcCCCCCCCChhhhCCCcccccCcccccccccccCCccccccCCCcccccccCccceeeEE
Confidence                 9999999999999875310                                              0268999999


Q ss_pred             eeCCceEECCCCCCHHHHhhhccHHHHHHHHHHHHcCCCCCcEEEEEcCCCcHHHHHHHHHHHhCCC-EEEEEeCCcchH
Q psy1959         122 VHTNDVFKIPEKMTFEHAASLADSYSTAQIVFSRHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKA-KVIGVCNSEDKT  200 (296)
Q Consensus       122 v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~-~Vi~~~~~~~~~  200 (296)
                      +|..+++++|+++++++++.++.++.+||+++.+.+++++|++|+|+|+ |++|++++|+| +.+|+ +|++++++++++
T Consensus       146 v~~~~~~~lP~~l~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlV~G~-G~iG~~a~q~A-k~~G~~~Vi~~~~~~~~~  223 (368)
T TIGR02818       146 VPEISLAKINPAAPLEEVCLLGCGVTTGIGAVLNTAKVEEGDTVAVFGL-GGIGLSVIQGA-RMAKASRIIAIDINPAKF  223 (368)
T ss_pred             echhheEECCCCCCHHHhhhhcchhHHHHHHHHHhcCCCCCCEEEEECC-CHHHHHHHHHH-HHcCCCeEEEEcCCHHHH
Confidence            9999999999999999999999999999999878889999999999986 99999999999 67898 799999999999


Q ss_pred             HHHHhcCCcEEEEcCC-chhHHHHHHHHhCCCcccEEEECCCC-ccHHHHHHHhhccC-ceE
Q psy1959         201 DLIRQKGAWAALTFTN-EKSLVNKVLEVSGGKYANVVFEAVGG-EDKTDLIRQKGAWA-ALT  259 (296)
Q Consensus       201 ~~~~~~g~~~~~~~~~-~~~~~~~i~~~~~~~g~d~vld~~g~-~~~~~~~~~lg~~~-g~~  259 (296)
                      +.++++|++.++++.+ ..++.+.+++++++ ++|++||++|+ ..+..+++++ +++ |++
T Consensus       224 ~~a~~~Ga~~~i~~~~~~~~~~~~v~~~~~~-g~d~vid~~G~~~~~~~~~~~~-~~~~G~~  283 (368)
T TIGR02818       224 ELAKKLGATDCVNPNDYDKPIQEVIVEITDG-GVDYSFECIGNVNVMRAALECC-HKGWGES  283 (368)
T ss_pred             HHHHHhCCCeEEcccccchhHHHHHHHHhCC-CCCEEEECCCCHHHHHHHHHHh-hcCCCeE
Confidence            9999999998887753 24566777787765 89999999998 6788999999 664 665

The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.

>KOG0025|consensus

Probab=100.00  E-value=2.1e-34  Score=247.03  Aligned_cols=261  Identities=22%  Similarity=0.268  Sum_probs=221.5

Q ss_pred             ccCCcceEEecCCCCC--------CCCCCCCCCCCCCCcEEEEeeeeecChhhHHHHcCCCCCCCCCCCcCCCceeEEEE
Q psy1959           9 ALNSSDLLLYNGSGDA--------KPTLPLVPGFEFSGTIIEKKMMTRINSSDLLLYNGSGDAKPTLPLVPGFEFSGTVI   80 (296)
Q Consensus         9 ~~~~~~~~~~~~~~~~--------~~~p~~~~~~~~~~evlvkv~~~~i~~~D~~~~~g~~~~~~~~p~~~G~e~~G~V~   80 (296)
                      .-+..++++|..-+++        .+.|.....     +|+||..|+.|||+|+..++|.|+.++.+|.+-|.|++|+|+
T Consensus        16 ~~~~~kalvY~~hgdP~kVlql~~~~~p~~~~s-----~v~Vk~LAaPINPsDIN~IQGvYpvrP~~PAVgGnEGv~eVv   90 (354)
T KOG0025|consen   16 MPARSKALVYSEHGDPAKVLQLKNLELPAVPGS-----DVLVKMLAAPINPSDINQIQGVYPVRPELPAVGGNEGVGEVV   90 (354)
T ss_pred             cccccceeeecccCCchhhheeecccCCCCCCC-----ceeeeeeecCCChHHhhhhccccCCCCCCCcccCCcceEEEE
Confidence            3446788888887776        455666666     899999999999999999999999999999999999999999


Q ss_pred             EEccCCCCCCCCCCCCCCCCCCCEEEEecCCCCCcccceEeeeCCceEECCCCCCHHHHhhhccHHHHHHHHHHHHcCCC
Q psy1959          81 EVADTKSSSTEEDDEEDVLQVGDKVLALNKELLHGFSDQCVVHTNDVFKIPEKMTFEHAASLADSYSTAQIVFSRHAKLK  160 (296)
Q Consensus        81 ~v~~~~~~~~~~g~~v~~~~~Gd~V~~~~~~~~g~~~~~~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~l~~~~~~~  160 (296)
                      .+          |+++.+|++||+|+....+ .|+|++|.+.+.+.++++++.++++.||.+..+.+|||+.|...-+++
T Consensus        91 ~v----------Gs~vkgfk~Gd~VIp~~a~-lGtW~t~~v~~e~~Li~vd~~~pl~~AAT~~VNP~TAyrmL~dfv~L~  159 (354)
T KOG0025|consen   91 AV----------GSNVKGFKPGDWVIPLSAN-LGTWRTEAVFSESDLIKVDKDIPLASAATLSVNPCTAYRMLKDFVQLN  159 (354)
T ss_pred             Ee----------cCCcCccCCCCeEeecCCC-CccceeeEeecccceEEcCCcCChhhhheeccCchHHHHHHHHHHhcC
Confidence            99          9999999999999988764 499999999999999999999999999999999999999999999999


Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHH----HhcCCcEEEEcCCchhHHHHHHHHhCCCcccEE
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLI----RQKGAWAALTFTNEKSLVNKVLEVSGGKYANVV  236 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~----~~~g~~~~~~~~~~~~~~~~i~~~~~~~g~d~v  236 (296)
                      +|++|+..|+.+++|++++|+| ++.|.+-+-+.|+....+.+    +.+|+++++...+ ..-.+..........+.+.
T Consensus       160 ~GD~vIQNganS~VG~~ViQla-ka~GiktinvVRdR~~ieel~~~Lk~lGA~~ViTeee-l~~~~~~k~~~~~~~prLa  237 (354)
T KOG0025|consen  160 KGDSVIQNGANSGVGQAVIQLA-KALGIKTINVVRDRPNIEELKKQLKSLGATEVITEEE-LRDRKMKKFKGDNPRPRLA  237 (354)
T ss_pred             CCCeeeecCcccHHHHHHHHHH-HHhCcceEEEeecCccHHHHHHHHHHcCCceEecHHH-hcchhhhhhhccCCCceEE
Confidence            9999999999999999999999 77999999998877665544    5679999886643 1112222222344578999


Q ss_pred             EECCCCccHHHHHHHhhccCceE-----------EeecccceeeeeEEecccccceeeecccc
Q psy1959         237 FEAVGGEDKTDLIRQKGAWAALT-----------FTNEKSLVNKVLEVSGGKYANVVFEAVGG  288 (296)
Q Consensus       237 ld~~g~~~~~~~~~~lg~~~g~~-----------~~~~~~~~~k~~~i~g~~~~~~~~~~~~~  288 (296)
                      |||+|+.......+.| .+||..           .++...+++|.+++.|.+...|.-+....
T Consensus       238 lNcVGGksa~~iar~L-~~GgtmvTYGGMSkqPv~~~ts~lIFKdl~~rGfWvt~W~~~~~~p  299 (354)
T KOG0025|consen  238 LNCVGGKSATEIARYL-ERGGTMVTYGGMSKQPVTVPTSLLIFKDLKLRGFWVTRWKKEHKSP  299 (354)
T ss_pred             EeccCchhHHHHHHHH-hcCceEEEecCccCCCcccccchheeccceeeeeeeeehhhccCCc
Confidence            9999998888888999 777765           45667999999999999987777666433

>KOG0022|consensus

Probab=100.00  E-value=4.1e-35  Score=254.36  Aligned_cols=226  Identities=23%  Similarity=0.282  Sum_probs=202.8

Q ss_pred             CCcceEEecCCCCC-----CCCCCCCCCCCCCCcEEEEeeeeecChhhHHHHcCCCCCCCCCCCcCCCceeEEEEEEccC
Q psy1959          11 NSSDLLLYNGSGDA-----KPTLPLVPGFEFSGTIIEKKMMTRINSSDLLLYNGSGDAKPTLPLVPGFEFSGTVIEVADT   85 (296)
Q Consensus        11 ~~~~~~~~~~~~~~-----~~~p~~~~~~~~~~evlvkv~~~~i~~~D~~~~~g~~~~~~~~p~~~G~e~~G~V~~v~~~   85 (296)
                      ...|+++.++++++     +.+++|+.+     ||+||+.++++|++|.+.++|..+ ...+|.++|||.+|+|+.+   
T Consensus         6 I~CKAAV~w~a~~PL~IEei~V~pPka~-----EVRIKI~~t~vCHTD~~~~~g~~~-~~~fP~IlGHEaaGIVESv---   76 (375)
T KOG0022|consen    6 ITCKAAVAWEAGKPLVIEEIEVAPPKAH-----EVRIKILATGVCHTDAYVWSGKDP-EGLFPVILGHEAAGIVESV---   76 (375)
T ss_pred             eEEeEeeeccCCCCeeEEEEEeCCCCCc-----eEEEEEEEEeeccccceeecCCCc-cccCceEecccceeEEEEe---
Confidence            35788999998888     567788999     999999999999999999999873 3678999999999999999   


Q ss_pred             CCCCCCCCCCCCCCCCCCEEEEecC---------------------------------------------CCCC--cccc
Q psy1959          86 KSSSTEEDDEEDVLQVGDKVLALNK---------------------------------------------ELLH--GFSD  118 (296)
Q Consensus        86 ~~~~~~~g~~v~~~~~Gd~V~~~~~---------------------------------------------~~~g--~~~~  118 (296)
                             |++|+.+++||+|+....                                             ++-|  +|+|
T Consensus        77 -------GegV~~vk~GD~Viplf~p~CgeCk~C~s~ktNlC~~~~~~~~~~~~~~DgtSRF~~~gk~iyHfmg~StFsE  149 (375)
T KOG0022|consen   77 -------GEGVTTVKPGDHVIPLFTPQCGECKFCKSPKTNLCEKFRADNGKGGMPYDGTSRFTCKGKPIYHFMGTSTFSE  149 (375)
T ss_pred             -------cCCccccCCCCEEeeccccCCCCcccccCCCCChhhhhcccccccccccCCceeeeeCCCceEEeccccccee
Confidence                   999999999999995321                                             2223  8999


Q ss_pred             eEeeeCCceEECCCCCCHHHHhhhccHHHHHHHHHHHHcCCCCCcEEEEEcCCCcHHHHHHHHHHHhCCC-EEEEEeCCc
Q psy1959         119 QCVVHTNDVFKIPEKMTFEHAASLADSYSTAQIVFSRHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKA-KVIGVCNSE  197 (296)
Q Consensus       119 ~~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~-~Vi~~~~~~  197 (296)
                      |.+++...+++|++..+++.++.|.+..+|+|.+.-+.+++++|+++.|+|. |++|+++++-| ++.|+ ++|.+|.++
T Consensus       150 YTVv~~~~v~kId~~aPl~kvcLLgCGvsTG~GAa~~~Akv~~GstvAVfGL-G~VGLav~~Ga-ka~GAsrIIgvDiN~  227 (375)
T KOG0022|consen  150 YTVVDDISVAKIDPSAPLEKVCLLGCGVSTGYGAAWNTAKVEPGSTVAVFGL-GGVGLAVAMGA-KAAGASRIIGVDINP  227 (375)
T ss_pred             EEEeecceeEecCCCCChhheeEeeccccccchhhhhhcccCCCCEEEEEec-chHHHHHHHhH-HhcCcccEEEEecCH
Confidence            9999999999999999999999999999999999889999999999999998 99999999999 56787 999999999


Q ss_pred             chHHHHHhcCCcEEEEcCCc-hhHHHHHHHHhCCCcccEEEECCCC-ccHHHHHHHhhccC
Q psy1959         198 DKTDLIRQKGAWAALTFTNE-KSLVNKVLEVSGGKYANVVFEAVGG-EDKTDLIRQKGAWA  256 (296)
Q Consensus       198 ~~~~~~~~~g~~~~~~~~~~-~~~~~~i~~~~~~~g~d~vld~~g~-~~~~~~~~~lg~~~  256 (296)
                      +|.++++++|++..+|..+. ....+.+++.|++ |+|..|||+|+ +.+++++.+. ..+
T Consensus       228 ~Kf~~ak~fGaTe~iNp~d~~~~i~evi~EmTdg-GvDysfEc~G~~~~m~~al~s~-h~G  286 (375)
T KOG0022|consen  228 DKFEKAKEFGATEFINPKDLKKPIQEVIIEMTDG-GVDYSFECIGNVSTMRAALESC-HKG  286 (375)
T ss_pred             HHHHHHHhcCcceecChhhccccHHHHHHHHhcC-CceEEEEecCCHHHHHHHHHHh-hcC
Confidence            99999999999999998743 3477888999974 99999999999 8999999998 444

>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases

Probab=100.00  E-value=1.8e-33  Score=260.77  Aligned_cols=229  Identities=22%  Similarity=0.280  Sum_probs=196.7

Q ss_pred             CcceEEecCCCCC-----CCCCCCCCCCCCCCcEEEEeeeeecChhhHHHHcCCCCCCCCCCCcCCCceeEEEEEEccCC
Q psy1959          12 SSDLLLYNGSGDA-----KPTLPLVPGFEFSGTIIEKKMMTRINSSDLLLYNGSGDAKPTLPLVPGFEFSGTVIEVADTK   86 (296)
Q Consensus        12 ~~~~~~~~~~~~~-----~~~p~~~~~~~~~~evlvkv~~~~i~~~D~~~~~g~~~~~~~~p~~~G~e~~G~V~~v~~~~   86 (296)
                      .|+++++..++..     .|.|.|.++     ||+||+.++++|++|++.+.|.++. ..+|.++|||++|+|+++    
T Consensus         2 ~~~a~~~~~~~~~~~~~~~~~P~~~~~-----eVlIrv~a~gi~~~D~~~~~g~~~~-~~~p~v~G~E~~G~V~~v----   71 (368)
T cd08300           2 TCKAAVAWEAGKPLSIEEVEVAPPKAG-----EVRIKILATGVCHTDAYTLSGADPE-GLFPVILGHEGAGIVESV----   71 (368)
T ss_pred             cceEEEEecCCCCcEEEEeecCCCCCC-----EEEEEEEEEEechhhHHHhcCCCcc-CCCCceeccceeEEEEEe----
Confidence            3667766655443     677788888     9999999999999999999887653 357999999999999999    


Q ss_pred             CCCCCCCCCCCCCCCCCEEEEecCC----------------------------------------------CCCcccceE
Q psy1959          87 SSSTEEDDEEDVLQVGDKVLALNKE----------------------------------------------LLHGFSDQC  120 (296)
Q Consensus        87 ~~~~~~g~~v~~~~~Gd~V~~~~~~----------------------------------------------~~g~~~~~~  120 (296)
                            |+++++|++||+|++....                                              ..|+|+||+
T Consensus        72 ------G~~v~~~~vGdrV~~~~~~~cg~C~~c~~g~~~~c~~~~~~~~~g~~~~g~~~~~~~g~~~~~~~~~G~~aey~  145 (368)
T cd08300          72 ------GEGVTSVKPGDHVIPLYTPECGECKFCKSGKTNLCQKIRATQGKGLMPDGTSRFSCKGKPIYHFMGTSTFSEYT  145 (368)
T ss_pred             ------CCCCccCCCCCEEEEcCCCCCCCChhhcCCCcCcCCCccccccccccCCCccccccCCcccccccccccceeEE
Confidence                  9999999999999875110                                              126899999


Q ss_pred             eeeCCceEECCCCCCHHHHhhhccHHHHHHHHHHHHcCCCCCcEEEEEcCCCcHHHHHHHHHHHhCCC-EEEEEeCCcch
Q psy1959         121 VVHTNDVFKIPEKMTFEHAASLADSYSTAQIVFSRHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKA-KVIGVCNSEDK  199 (296)
Q Consensus       121 ~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~-~Vi~~~~~~~~  199 (296)
                      .++...++++|+++++++++.+..++.+||+++.+.+++++|++|+|+|+ |++|++++|+| +.+|+ +|++++++++|
T Consensus       146 ~v~~~~~~~iP~~l~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlV~G~-G~vG~~a~~~a-k~~G~~~vi~~~~~~~~  223 (368)
T cd08300         146 VVAEISVAKINPEAPLDKVCLLGCGVTTGYGAVLNTAKVEPGSTVAVFGL-GAVGLAVIQGA-KAAGASRIIGIDINPDK  223 (368)
T ss_pred             EEchhceEeCCCCCChhhhhhhccchhhhHHHHHHhcCCCCCCEEEEECC-CHHHHHHHHHH-HHcCCCeEEEEeCCHHH
Confidence            99999999999999999999999999999999877889999999999986 99999999999 67899 79999999999


Q ss_pred             HHHHHhcCCcEEEEcCCc-hhHHHHHHHHhCCCcccEEEECCCC-ccHHHHHHHhhccC-ceEE
Q psy1959         200 TDLIRQKGAWAALTFTNE-KSLVNKVLEVSGGKYANVVFEAVGG-EDKTDLIRQKGAWA-ALTF  260 (296)
Q Consensus       200 ~~~~~~~g~~~~~~~~~~-~~~~~~i~~~~~~~g~d~vld~~g~-~~~~~~~~~lg~~~-g~~~  260 (296)
                      ++.++++|++.++++.+. .++.+.+.+++++ ++|++||++|+ ..+..+++++ +++ |++.
T Consensus       224 ~~~~~~lGa~~~i~~~~~~~~~~~~v~~~~~~-g~d~vid~~g~~~~~~~a~~~l-~~~~G~~v  285 (368)
T cd08300         224 FELAKKFGATDCVNPKDHDKPIQQVLVEMTDG-GVDYTFECIGNVKVMRAALEAC-HKGWGTSV  285 (368)
T ss_pred             HHHHHHcCCCEEEcccccchHHHHHHHHHhCC-CCcEEEECCCChHHHHHHHHhh-ccCCCeEE
Confidence            999999999988887652 2577788888765 89999999998 6889999999 664 6663

Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim

>cd08291 ETR_like_1 2-enoyl thioester reductase (ETR) like proteins, child 1

Probab=100.00  E-value=2.7e-33  Score=254.98  Aligned_cols=246  Identities=24%  Similarity=0.333  Sum_probs=204.1

Q ss_pred             cceEEecCCCC----------CCCCCCCCCCCCCCCcEEEEeeeeecChhhHHHHcCCCCCCCCCCCcCCCceeEEEEEE
Q psy1959          13 SDLLLYNGSGD----------AKPTLPLVPGFEFSGTIIEKKMMTRINSSDLLLYNGSGDAKPTLPLVPGFEFSGTVIEV   82 (296)
Q Consensus        13 ~~~~~~~~~~~----------~~~~p~~~~~~~~~~evlvkv~~~~i~~~D~~~~~g~~~~~~~~p~~~G~e~~G~V~~v   82 (296)
                      |+++++.+++.          ..|.|.|.++     ||+||+.++++|++|+..+.|.++....+|.++|||++|+|+++
T Consensus         1 m~a~~~~~~~~~~~~~~~~~~~~~~p~~~~~-----evlv~v~~~gi~~~d~~~~~g~~~~~~~~p~v~G~e~~G~V~~v   75 (324)
T cd08291           1 MKALLLEEYGKPLEVKELSLPEPEVPEPGPG-----EVLIKVEAAPINPSDLGFLKGQYGSTKALPVPPGFEGSGTVVAA   75 (324)
T ss_pred             CeEEEEeecCCCccccEEEecccCCCCCCCC-----eEEEEEEEccCCHHHHHHhcCcCCCCCCCCcCCCcceEEEEEEE
Confidence            56666665542          1567778888     99999999999999999998876544567899999999999999


Q ss_pred             ccCCCCCCCCCCCCCC-CCCCCEEEEecCCCCCcccceEeeeCCceEECCCCCCHHHHhhhccHHHHHHHHHHHHcCCCC
Q psy1959          83 ADTKSSSTEEDDEEDV-LQVGDKVLALNKELLHGFSDQCVVHTNDVFKIPEKMTFEHAASLADSYSTAQIVFSRHAKLKE  161 (296)
Q Consensus        83 ~~~~~~~~~~g~~v~~-~~~Gd~V~~~~~~~~g~~~~~~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~  161 (296)
                                |+++.+ |++||+|+++... .|+|+||++++++.++++|++++++++++++..+.+||..+ ..... +
T Consensus        76 ----------G~~v~~~~~vGd~V~~~~~~-~g~~a~~~~v~~~~~~~iP~~~~~~~aa~~~~~~~ta~~~~-~~~~~-~  142 (324)
T cd08291          76 ----------GGGPLAQSLIGKRVAFLAGS-YGTYAEYAVADAQQCLPLPDGVSFEQGASSFVNPLTALGML-ETARE-E  142 (324)
T ss_pred             ----------CCCccccCCCCCEEEecCCC-CCcchheeeecHHHeEECCCCCCHHHHhhhcccHHHHHHHH-Hhhcc-C
Confidence                      999986 9999999987531 38999999999999999999999999998888999998665 55555 5


Q ss_pred             CcEEEEE-cCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCcEEEEcCCchhHHHHHHHHhCCCcccEEEECC
Q psy1959         162 KQTVLVT-AAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNKVLEVSGGKYANVVFEAV  240 (296)
Q Consensus       162 g~~vlI~-Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~g~d~vld~~  240 (296)
                      ++.++|+ +++|++|++++|+| +.+|++|+++++++++.++++++|++.+++++. .++.+.+++.+.++++|++||++
T Consensus       143 ~~~vlv~~~g~g~vG~~a~q~a-~~~G~~vi~~~~~~~~~~~~~~~g~~~~i~~~~-~~~~~~v~~~~~~~~~d~vid~~  220 (324)
T cd08291         143 GAKAVVHTAAASALGRMLVRLC-KADGIKVINIVRRKEQVDLLKKIGAEYVLNSSD-PDFLEDLKELIAKLNATIFFDAV  220 (324)
T ss_pred             CCcEEEEccCccHHHHHHHHHH-HHcCCEEEEEeCCHHHHHHHHHcCCcEEEECCC-ccHHHHHHHHhCCCCCcEEEECC
Confidence            5566665 77899999999999 678999999999999999999999999998876 67888888888778999999999


Q ss_pred             CCccHHHHHHHhhccCceEEee------------cccceeeeeEEeccccc
Q psy1959         241 GGEDKTDLIRQKGAWAALTFTN------------EKSLVNKVLEVSGGKYA  279 (296)
Q Consensus       241 g~~~~~~~~~~lg~~~g~~~~~------------~~~~~~k~~~i~g~~~~  279 (296)
                      |+......++++ +.+|++...            ...++.|++++.++...
T Consensus       221 g~~~~~~~~~~l-~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (324)
T cd08291         221 GGGLTGQILLAM-PYGSTLYVYGYLSGKLDEPIDPVDLIFKNKSIEGFWLT  270 (324)
T ss_pred             CcHHHHHHHHhh-CCCCEEEEEEecCCCCcccCCHHHHhhcCcEEEEEEHH
Confidence            998888889999 777765321            22345677888877633

2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordin

>PLN02827 Alcohol dehydrogenase-like

Probab=100.00  E-value=2.2e-33  Score=261.06  Aligned_cols=245  Identities=22%  Similarity=0.262  Sum_probs=206.4

Q ss_pred             CCcceEEecCCCCC-----CCCCCCCCCCCCCCcEEEEeeeeecChhhHHHHcCCCCCCCCCCCcCCCceeEEEEEEccC
Q psy1959          11 NSSDLLLYNGSGDA-----KPTLPLVPGFEFSGTIIEKKMMTRINSSDLLLYNGSGDAKPTLPLVPGFEFSGTVIEVADT   85 (296)
Q Consensus        11 ~~~~~~~~~~~~~~-----~~~p~~~~~~~~~~evlvkv~~~~i~~~D~~~~~g~~~~~~~~p~~~G~e~~G~V~~v~~~   85 (296)
                      -.|+++++.++.+.     .|.|.|.++     ||+|||.+++||++|++.+.|..    .+|.++|||++|+|+++   
T Consensus        11 ~~mka~~~~~~~~~~~~~e~~~P~~~~~-----eVlVkv~~~gic~sD~~~~~g~~----~~p~i~GhE~~G~V~~v---   78 (378)
T PLN02827         11 ITCRAAVAWGAGEALVMEEVEVSPPQPL-----EIRIKVVSTSLCRSDLSAWESQA----LFPRIFGHEASGIVESI---   78 (378)
T ss_pred             ceeEEEEEecCCCCceEEEeecCCCCCC-----EEEEEEEEEecChhHHHHhcCCC----CCCeeecccceEEEEEc---
Confidence            45899999887653     677888889     99999999999999999987742    35889999999999999   


Q ss_pred             CCCCCCCCCCCCCCCCCCEEEEecCC----------------------------------------------CCCcccce
Q psy1959          86 KSSSTEEDDEEDVLQVGDKVLALNKE----------------------------------------------LLHGFSDQ  119 (296)
Q Consensus        86 ~~~~~~~g~~v~~~~~Gd~V~~~~~~----------------------------------------------~~g~~~~~  119 (296)
                             |++++++++||+|+.....                                              ..|+|+||
T Consensus        79 -------G~~v~~~~~GdrV~~~~~~~cg~C~~C~~g~~~~C~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~G~~aey  151 (378)
T PLN02827         79 -------GEGVTEFEKGDHVLTVFTGECGSCRHCISGKSNMCQVLGLERKGVMHSDQKTRFSIKGKPVYHYCAVSSFSEY  151 (378)
T ss_pred             -------CCCCcccCCCCEEEEecCCCCCCChhhhCcCcccccCccccccccccCCCcccccccCcccccccccccceee
Confidence                   9999999999999976320                                              12799999


Q ss_pred             EeeeCCceEECCCCCCHHHHhhhccHHHHHHHHHHHHcCCCCCcEEEEEcCCCcHHHHHHHHHHHhCCC-EEEEEeCCcc
Q psy1959         120 CVVHTNDVFKIPEKMTFEHAASLADSYSTAQIVFSRHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKA-KVIGVCNSED  198 (296)
Q Consensus       120 ~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~-~Vi~~~~~~~  198 (296)
                      +.+++..++++|+++++++++.+..++.++|+++.+.+++++|++|+|+|+ |++|++++|+| +..|+ +|++++.+++
T Consensus       152 v~v~~~~~~~iP~~l~~~~aa~l~~~~~~a~~~~~~~~~~~~g~~VlV~G~-G~vG~~~iqla-k~~G~~~vi~~~~~~~  229 (378)
T PLN02827        152 TVVHSGCAVKVDPLAPLHKICLLSCGVAAGLGAAWNVADVSKGSSVVIFGL-GTVGLSVAQGA-KLRGASQIIGVDINPE  229 (378)
T ss_pred             EEechhheEECCCCCCHHHhhhhcchhHhhHHHHHhhcCCCCCCEEEEECC-CHHHHHHHHHH-HHcCCCeEEEECCCHH
Confidence            999999999999999999999888899999988767788999999999996 99999999999 67898 5888888999


Q ss_pred             hHHHHHhcCCcEEEEcCCc-hhHHHHHHHHhCCCcccEEEECCCC-ccHHHHHHHhhccC-ceEEee----------c-c
Q psy1959         199 KTDLIRQKGAWAALTFTNE-KSLVNKVLEVSGGKYANVVFEAVGG-EDKTDLIRQKGAWA-ALTFTN----------E-K  264 (296)
Q Consensus       199 ~~~~~~~~g~~~~~~~~~~-~~~~~~i~~~~~~~g~d~vld~~g~-~~~~~~~~~lg~~~-g~~~~~----------~-~  264 (296)
                      |.++++++|++.++++++. .++.+.+.+.+++ ++|++||++|. ..+..+++++ +.+ |++..-          . .
T Consensus       230 ~~~~a~~lGa~~~i~~~~~~~~~~~~v~~~~~~-g~d~vid~~G~~~~~~~~l~~l-~~g~G~iv~~G~~~~~~~~~~~~  307 (378)
T PLN02827        230 KAEKAKTFGVTDFINPNDLSEPIQQVIKRMTGG-GADYSFECVGDTGIATTALQSC-SDGWGLTVTLGVPKAKPEVSAHY  307 (378)
T ss_pred             HHHHHHHcCCcEEEcccccchHHHHHHHHHhCC-CCCEEEECCCChHHHHHHHHhh-ccCCCEEEEECCcCCCccccccH
Confidence            9999999999888877541 3677778887765 89999999998 5799999999 776 777321          1 1


Q ss_pred             cceeeeeEEecccc
Q psy1959         265 SLVNKVLEVSGGKY  278 (296)
Q Consensus       265 ~~~~k~~~i~g~~~  278 (296)
                      .++.|+++|.|+..
T Consensus       308 ~~~~~~~~i~g~~~  321 (378)
T PLN02827        308 GLFLSGRTLKGSLF  321 (378)
T ss_pred             HHHhcCceEEeeec
Confidence            35668888888753

>PRK09880 L-idonate 5-dehydrogenase; Provisional

Probab=100.00  E-value=1.4e-33  Score=259.08  Aligned_cols=239  Identities=21%  Similarity=0.226  Sum_probs=192.6

Q ss_pred             CcceEEecCCCCC----CCCCCCCCCCCCCCcEEEEeeeeecChhhHHHHc-CCCCC-CCCCCCcCCCceeEEEEEEccC
Q psy1959          12 SSDLLLYNGSGDA----KPTLPLVPGFEFSGTIIEKKMMTRINSSDLLLYN-GSGDA-KPTLPLVPGFEFSGTVIEVADT   85 (296)
Q Consensus        12 ~~~~~~~~~~~~~----~~~p~~~~~~~~~~evlvkv~~~~i~~~D~~~~~-g~~~~-~~~~p~~~G~e~~G~V~~v~~~   85 (296)
                      .+++++++++++.    .|.| +.++     ||||||.++|||++|++.++ |.++. ...+|.++|||++|+|+++   
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~p-~~~~-----evlVkv~a~gic~sD~~~~~~g~~~~~~~~~p~v~GhE~~G~V~~v---   74 (343)
T PRK09880          4 KTQSCVVAGKKDVAVTEQEIE-WNNN-----GTLVQITRGGICGSDLHYYQEGKVGNFVIKAPMVLGHEVIGKIVHS---   74 (343)
T ss_pred             cceEEEEecCCceEEEecCCC-CCCC-----eEEEEEEEEEECccccHhhccCCcccccccCCcccCcccEEEEEEe---
Confidence            4678888888876    4554 5677     99999999999999999875 44322 2457999999999999999   


Q ss_pred             CCCCCCCCCCCCCCCCCCEEEEecC------------------------------CCCCcccceEeeeCCceEECCCCCC
Q psy1959          86 KSSSTEEDDEEDVLQVGDKVLALNK------------------------------ELLHGFSDQCVVHTNDVFKIPEKMT  135 (296)
Q Consensus        86 ~~~~~~~g~~v~~~~~Gd~V~~~~~------------------------------~~~g~~~~~~~v~~~~~~~iP~~~~  135 (296)
                             +  +++|++||||+....                              +..|+|+||++++++.++++|++++
T Consensus        75 -------~--v~~~~vGdrV~~~~~~~cg~c~~c~~g~~~~c~~~~~~g~~~~~~~~~G~~aey~~v~~~~~~~~P~~l~  145 (343)
T PRK09880         75 -------D--SSGLKEGQTVAINPSKPCGHCKYCLSHNENQCTTMRFFGSAMYFPHVDGGFTRYKVVDTAQCIPYPEKAD  145 (343)
T ss_pred             -------c--CccCCCCCEEEECCCCCCcCChhhcCCChhhCCCcceeecccccCCCCCceeeeEEechHHeEECCCCCC
Confidence                   3  567999999985310                              1359999999999999999999999


Q ss_pred             HHHHhhhccHHHHHHHHHHHHcCCCCCcEEEEEcCCCcHHHHHHHHHHHhCCC-EEEEEeCCcchHHHHHhcCCcEEEEc
Q psy1959         136 FEHAASLADSYSTAQIVFSRHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKA-KVIGVCNSEDKTDLIRQKGAWAALTF  214 (296)
Q Consensus       136 ~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~-~Vi~~~~~~~~~~~~~~~g~~~~~~~  214 (296)
                      +++++ +..++++||+++. .....+|++|+|+|+ |++|++++|+| +.+|+ +|+++++++++++.++++|++.++++
T Consensus       146 ~~~aa-~~~~~~~a~~al~-~~~~~~g~~VlV~G~-G~vG~~aiqla-k~~G~~~Vi~~~~~~~~~~~a~~lGa~~vi~~  221 (343)
T PRK09880        146 EKVMA-FAEPLAVAIHAAH-QAGDLQGKRVFVSGV-GPIGCLIVAAV-KTLGAAEIVCADVSPRSLSLAREMGADKLVNP  221 (343)
T ss_pred             HHHHH-hhcHHHHHHHHHH-hcCCCCCCEEEEECC-CHHHHHHHHHH-HHcCCcEEEEEeCCHHHHHHHHHcCCcEEecC
Confidence            87665 6688999999994 456668999999996 99999999999 67898 69999999999999999999999888


Q ss_pred             CCchhHHHHHHHHhCCCcccEEEECCCC-ccHHHHHHHhhccCceEEe----------ecccceeeeeEEeccc
Q psy1959         215 TNEKSLVNKVLEVSGGKYANVVFEAVGG-EDKTDLIRQKGAWAALTFT----------NEKSLVNKVLEVSGGK  277 (296)
Q Consensus       215 ~~~~~~~~~i~~~~~~~g~d~vld~~g~-~~~~~~~~~lg~~~g~~~~----------~~~~~~~k~~~i~g~~  277 (296)
                      ++ .++.+.. +.  ..++|++||++|+ ..+..+++++ +++|++..          +...++.|++++.|++
T Consensus       222 ~~-~~~~~~~-~~--~g~~D~vid~~G~~~~~~~~~~~l-~~~G~iv~~G~~~~~~~~~~~~~~~k~~~i~g~~  290 (343)
T PRK09880        222 QN-DDLDHYK-AE--KGYFDVSFEVSGHPSSINTCLEVT-RAKGVMVQVGMGGAPPEFPMMTLIVKEISLKGSF  290 (343)
T ss_pred             Cc-ccHHHHh-cc--CCCCCEEEECCCCHHHHHHHHHHh-hcCCEEEEEccCCCCCccCHHHHHhCCcEEEEEe
Confidence            66 4443322 21  2269999999998 5789999999 78777632          2235667888888876

>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase

Probab=100.00  E-value=4e-33  Score=258.42  Aligned_cols=247  Identities=22%  Similarity=0.262  Sum_probs=206.0

Q ss_pred             CcceEEecCCCCC-----CCCCCCCCCCCCCCcEEEEeeeeecChhhHHHHcCCCCCCCCCCCcCCCceeEEEEEEccCC
Q psy1959          12 SSDLLLYNGSGDA-----KPTLPLVPGFEFSGTIIEKKMMTRINSSDLLLYNGSGDAKPTLPLVPGFEFSGTVIEVADTK   86 (296)
Q Consensus        12 ~~~~~~~~~~~~~-----~~~p~~~~~~~~~~evlvkv~~~~i~~~D~~~~~g~~~~~~~~p~~~G~e~~G~V~~v~~~~   86 (296)
                      +|+++++..+++.     .|.|+|+++     ||+||+.+++||++|++.+.|..+. ..+|.++|||++|+|+++    
T Consensus         2 ~~ka~~~~~~~~~~~l~~~~~p~~~~~-----evlIkv~a~gi~~~D~~~~~g~~~~-~~~p~i~G~e~~G~V~~v----   71 (369)
T cd08301           2 TCKAAVAWEAGKPLVIEEVEVAPPQAM-----EVRIKILHTSLCHTDVYFWEAKGQT-PLFPRILGHEAAGIVESV----   71 (369)
T ss_pred             ccEEEEEecCCCCcEEEEeeCCCCCCC-----eEEEEEEEEeeCchhHHHhcCCCCC-CCCCcccccccceEEEEe----
Confidence            6888888876543     577888888     9999999999999999999987652 467899999999999999    


Q ss_pred             CCCCCCCCCCCCCCCCCEEEEecCC-----------------------------------------------CCCcccce
Q psy1959          87 SSSTEEDDEEDVLQVGDKVLALNKE-----------------------------------------------LLHGFSDQ  119 (296)
Q Consensus        87 ~~~~~~g~~v~~~~~Gd~V~~~~~~-----------------------------------------------~~g~~~~~  119 (296)
                            |+++++|++||||+.....                                               ..|+|+||
T Consensus        72 ------G~~v~~~~~GdrV~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~~G~~aey  145 (369)
T cd08301          72 ------GEGVTDLKPGDHVLPVFTGECKECRHCKSEKSNMCDLLRINTDRGVMINDGKSRFSINGKPIYHFVGTSTFSEY  145 (369)
T ss_pred             ------CCCCCccccCCEEEEccCCCCCCCchhcCCCcccCcCcccccccccccCCCccccccCCcceeeeeccccceeE
Confidence                  9999999999999975210                                               13789999


Q ss_pred             EeeeCCceEECCCCCCHHHHhhhccHHHHHHHHHHHHcCCCCCcEEEEEcCCCcHHHHHHHHHHHhCCC-EEEEEeCCcc
Q psy1959         120 CVVHTNDVFKIPEKMTFEHAASLADSYSTAQIVFSRHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKA-KVIGVCNSED  198 (296)
Q Consensus       120 ~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~-~Vi~~~~~~~  198 (296)
                      ++++...++++|+++++++++.+++++.+||.++.+..++++|++|+|+|+ |++|++++|+| +.+|+ +|++++++++
T Consensus       146 ~~v~~~~~~~iP~~~~~~~aa~~~~~~~ta~~~~~~~~~~~~g~~VlV~G~-g~vG~~a~q~a-k~~G~~~vi~~~~~~~  223 (369)
T cd08301         146 TVVHVGCVAKINPEAPLDKVCLLSCGVSTGLGAAWNVAKVKKGSTVAIFGL-GAVGLAVAEGA-RIRGASRIIGVDLNPS  223 (369)
T ss_pred             EEEecccEEECCCCCCHHHhhhhcchhhHHHHHHHhhcCCCCCCEEEEECC-CHHHHHHHHHH-HHcCCCeEEEEcCCHH
Confidence            999999999999999999999999999999998878889999999999986 99999999999 67898 8999999999


Q ss_pred             hHHHHHhcCCcEEEEcCCc-hhHHHHHHHHhCCCcccEEEECCCC-ccHHHHHHHhhccC-ceEEeec----------c-
Q psy1959         199 KTDLIRQKGAWAALTFTNE-KSLVNKVLEVSGGKYANVVFEAVGG-EDKTDLIRQKGAWA-ALTFTNE----------K-  264 (296)
Q Consensus       199 ~~~~~~~~g~~~~~~~~~~-~~~~~~i~~~~~~~g~d~vld~~g~-~~~~~~~~~lg~~~-g~~~~~~----------~-  264 (296)
                      +.+.++++|++.++++.+. .++.+.+++.+++ ++|++||++|+ ..+..+++++ +.+ |++....          . 
T Consensus       224 ~~~~~~~~Ga~~~i~~~~~~~~~~~~v~~~~~~-~~d~vid~~G~~~~~~~~~~~~-~~~~g~~v~~g~~~~~~~~~~~~  301 (369)
T cd08301         224 KFEQAKKFGVTEFVNPKDHDKPVQEVIAEMTGG-GVDYSFECTGNIDAMISAFECV-HDGWGVTVLLGVPHKDAVFSTHP  301 (369)
T ss_pred             HHHHHHHcCCceEEcccccchhHHHHHHHHhCC-CCCEEEECCCChHHHHHHHHHh-hcCCCEEEEECcCCCCcccccCH
Confidence            9999999999888877541 3566777777765 89999999998 5788899999 664 6663211          0 


Q ss_pred             cceeeeeEEecccc
Q psy1959         265 SLVNKVLEVSGGKY  278 (296)
Q Consensus       265 ~~~~k~~~i~g~~~  278 (296)
                      ..+.+++++.|+..
T Consensus       302 ~~~~~~~~i~g~~~  315 (369)
T cd08301         302 MNLLNGRTLKGTLF  315 (369)
T ss_pred             HHHhcCCeEEEEec
Confidence            11346788887653

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the

>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent

Probab=100.00  E-value=6.5e-33  Score=258.95  Aligned_cols=228  Identities=22%  Similarity=0.259  Sum_probs=186.7

Q ss_pred             CcceEEecCCCCC----CCCCCCC-------CCCCCCCcEEEEeeeeecChhhHHHHcCCCCCCCCCCCcCCCceeEEEE
Q psy1959          12 SSDLLLYNGSGDA----KPTLPLV-------PGFEFSGTIIEKKMMTRINSSDLLLYNGSGDAKPTLPLVPGFEFSGTVI   80 (296)
Q Consensus        12 ~~~~~~~~~~~~~----~~~p~~~-------~~~~~~~evlvkv~~~~i~~~D~~~~~g~~~~~~~~p~~~G~e~~G~V~   80 (296)
                      .|+++++.++++.    .|.|.|+       ++     ||||||.++|||++|++.+.|.+.  ..+|.++|||++|+|+
T Consensus         2 ~mka~v~~~~~~~~~~e~~~P~~~~~~~~~~~~-----eVlVkv~a~gIcgsD~~~~~g~~~--~~~p~i~GhE~~G~V~   74 (393)
T TIGR02819         2 GNRGVVYLGPGKVEVQDIDYPKLELPDGRKCEH-----GVILKVVTTNICGSDQHMVRGRTT--APTGLVLGHEITGEVI   74 (393)
T ss_pred             CceEEEEecCCceeEEeccCCcccCCCccCCCC-----eEEEEEEEeeecHHHHHHHCCCCC--CCCCccccceeEEEEE
Confidence            5889999888765    5555553       57     999999999999999999988653  3468999999999999


Q ss_pred             EEccCCCCCCCCCCCCCCCCCCCEEEEecC-----------------------------------CCCCcccceEeeeCC
Q psy1959          81 EVADTKSSSTEEDDEEDVLQVGDKVLALNK-----------------------------------ELLHGFSDQCVVHTN  125 (296)
Q Consensus        81 ~v~~~~~~~~~~g~~v~~~~~Gd~V~~~~~-----------------------------------~~~g~~~~~~~v~~~  125 (296)
                      ++          |++|++|++||||+....                                   .+.|+|+||+++|..
T Consensus        75 ~v----------G~~V~~~~vGdrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~~~~~~~~g~~~~~~~~G~~aey~~v~~~  144 (393)
T TIGR02819        75 EK----------GRDVEFIKIGDIVSVPFNIACGRCRNCKEGHTGVCLNVNPARAGAAYGYVDMGGWVGGQSEYVMVPYA  144 (393)
T ss_pred             EE----------cCccccccCCCEEEEecccCCCCChHHHCcCcccCcCCCCCCccceecccccCCCCCceEEEEEechh
Confidence            99          999999999999976310                                   125899999999964


Q ss_pred             --ceEECCCCCCH----HHHhhhccHHHHHHHHHHHHcCCCCCcEEEEEcCCCcHHHHHHHHHHHhCCCEE-EEEeCCcc
Q psy1959         126 --DVFKIPEKMTF----EHAASLADSYSTAQIVFSRHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKAKV-IGVCNSED  198 (296)
Q Consensus       126 --~~~~iP~~~~~----~~aa~l~~~~~ta~~~l~~~~~~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~~V-i~~~~~~~  198 (296)
                        .++++|++++.    ..++++..++.+||+++ ...++++|++|+|.|+ |++|++++|+| +.+|+++ ++++++++
T Consensus       145 ~~~l~~vP~~~~~~~~~~~~a~l~~~~~ta~~a~-~~~~~~~g~~VlV~G~-G~iG~~aiqlA-k~~Ga~~vi~~d~~~~  221 (393)
T TIGR02819       145 DFNLLKFPDRDQALEKIRDLTMLSDIFPTGYHGA-VTAGVGPGSTVYIAGA-GPVGLAAAASA-QLLGAAVVIVGDLNPA  221 (393)
T ss_pred             hCceEECCCcccccccccceeeeccHHHHHHHHH-HhcCCCCCCEEEEECC-CHHHHHHHHHH-HHcCCceEEEeCCCHH
Confidence              69999998753    34567888999999998 4688999999999775 99999999999 6789974 44567788


Q ss_pred             hHHHHHhcCCcEEEEcCCchhHHHHHHHHhCCCcccEEEECCCCc---------------cHHHHHHHhhccCceEEe
Q psy1959         199 KTDLIRQKGAWAALTFTNEKSLVNKVLEVSGGKYANVVFEAVGGE---------------DKTDLIRQKGAWAALTFT  261 (296)
Q Consensus       199 ~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~g~d~vld~~g~~---------------~~~~~~~~lg~~~g~~~~  261 (296)
                      |+++++++|++ .++.....++.+.+.+.++++++|++||++|.+               .++.+++++ +++|++.+
T Consensus       222 r~~~a~~~Ga~-~v~~~~~~~~~~~v~~~~~~~g~Dvvid~~G~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~G~i~~  297 (393)
T TIGR02819       222 RLAQARSFGCE-TVDLSKDATLPEQIEQILGEPEVDCAVDCVGFEARGHGHDGKKEAPATVLNSLMEVT-RVGGAIGI  297 (393)
T ss_pred             HHHHHHHcCCe-EEecCCcccHHHHHHHHcCCCCCcEEEECCCCccccccccccccchHHHHHHHHHHh-hCCCEEEE
Confidence            99999999996 454433246667788888777899999999984               699999999 88887743

Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.

>cd08292 ETR_like_2 2-enoyl thioester reductase (ETR) like proteins, child 2

Probab=100.00  E-value=1.9e-32  Score=248.61  Aligned_cols=244  Identities=23%  Similarity=0.275  Sum_probs=209.4

Q ss_pred             cceEEecCCCC--------CCCCCCCCCCCCCCCcEEEEeeeeecChhhHHHHcCCCCCCCCCCCcCCCceeEEEEEEcc
Q psy1959          13 SDLLLYNGSGD--------AKPTLPLVPGFEFSGTIIEKKMMTRINSSDLLLYNGSGDAKPTLPLVPGFEFSGTVIEVAD   84 (296)
Q Consensus        13 ~~~~~~~~~~~--------~~~~p~~~~~~~~~~evlvkv~~~~i~~~D~~~~~g~~~~~~~~p~~~G~e~~G~V~~v~~   84 (296)
                      |+++++.+++.        ..|.|.+.++     ||+|||.++++|+.|+..+.|.++....+|.++|||++|+|+++  
T Consensus         1 m~a~~~~~~~~~~~~~~~~~~~~p~~~~~-----~v~i~v~~~~~~~~d~~~~~g~~~~~~~~p~~~G~e~~G~V~~~--   73 (324)
T cd08292           1 MRAAVHTQFGDPADVLEIGEVPKPTPGAG-----EVLVRTTLSPIHNHDLWTIRGTYGYKPELPAIGGSEAVGVVDAV--   73 (324)
T ss_pred             CeeEEEccCCChhHeEEEeecCCCCCCCC-----eEEEEEEEccCCHHHHHHhcCcCCCCCCCCCCCCcceEEEEEEe--
Confidence            57777776553        1567777888     99999999999999999998877544556889999999999999  


Q ss_pred             CCCCCCCCCCCCCCCCCCCEEEEecCCCCCcccceEeeeCCceEECCCCCCHHHHhhhccHHHHHHHHHHHHcCCCCCcE
Q psy1959          85 TKSSSTEEDDEEDVLQVGDKVLALNKELLHGFSDQCVVHTNDVFKIPEKMTFEHAASLADSYSTAQIVFSRHAKLKEKQT  164 (296)
Q Consensus        85 ~~~~~~~~g~~v~~~~~Gd~V~~~~~~~~g~~~~~~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~  164 (296)
                              |+++..+++||+|++...  .|+|++|++++...++++|+++++++++.++..+.+||+++ ...++++|++
T Consensus        74 --------G~~v~~~~~Gd~V~~~~~--~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~~~~~ta~~~~-~~~~~~~g~~  142 (324)
T cd08292          74 --------GEGVKGLQVGQRVAVAPV--HGTWAEYFVAPADGLVPLPDGISDEVAAQLIAMPLSALMLL-DFLGVKPGQW  142 (324)
T ss_pred             --------CCCCCCCCCCCEEEeccC--CCcceeEEEEchHHeEECCCCCCHHHhhhccccHHHHHHHH-HhhCCCCCCE
Confidence                    999999999999999863  48999999999999999999999999999988999999998 5689999999


Q ss_pred             EEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCcEEEEcCCchhHHHHHHHHhCCCcccEEEECCCCcc
Q psy1959         165 VLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNKVLEVSGGKYANVVFEAVGGED  244 (296)
Q Consensus       165 vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~g~d~vld~~g~~~  244 (296)
                      |+|+|++|.+|++++++| +.+|+++++++.++++.+.++++|++.+++.++ .++.+.+.+.+.++++|++||++|+..
T Consensus       143 vlI~g~~g~ig~~~~~~a-~~~G~~v~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~i~~~~~~~~~d~v~d~~g~~~  220 (324)
T cd08292         143 LIQNAAGGAVGKLVAMLA-AARGINVINLVRRDAGVAELRALGIGPVVSTEQ-PGWQDKVREAAGGAPISVALDSVGGKL  220 (324)
T ss_pred             EEEcccccHHHHHHHHHH-HHCCCeEEEEecCHHHHHHHHhcCCCEEEcCCC-chHHHHHHHHhCCCCCcEEEECCCChh
Confidence            999999999999999999 678999999999999999998899888888766 678888888888889999999999988


Q ss_pred             HHHHHHHhhccCceEEeec-----------ccceeeeeEEeccc
Q psy1959         245 KTDLIRQKGAWAALTFTNE-----------KSLVNKVLEVSGGK  277 (296)
Q Consensus       245 ~~~~~~~lg~~~g~~~~~~-----------~~~~~k~~~i~g~~  277 (296)
                      ...+++++ +.+|++..-.           ..++.+++++.+..
T Consensus       221 ~~~~~~~l-~~~g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~  263 (324)
T cd08292         221 AGELLSLL-GEGGTLVSFGSMSGEPMQISSGDLIFKQATVRGFW  263 (324)
T ss_pred             HHHHHHhh-cCCcEEEEEecCCCCCCcCCHHHHhhCCCEEEEEE
Confidence            89999999 7777764321           11355677777665

2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordina

>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]

Probab=100.00  E-value=1e-32  Score=253.68  Aligned_cols=243  Identities=27%  Similarity=0.350  Sum_probs=191.9

Q ss_pred             cceEEecCCCCC-----CCCCCCCCCCCCCCcEEEEeeeeecChhhHHHHcCCCCCCCCCCC-cCCCceeEEEEEEccCC
Q psy1959          13 SDLLLYNGSGDA-----KPTLPLVPGFEFSGTIIEKKMMTRINSSDLLLYNGSGDAKPTLPL-VPGFEFSGTVIEVADTK   86 (296)
Q Consensus        13 ~~~~~~~~~~~~-----~~~p~~~~~~~~~~evlvkv~~~~i~~~D~~~~~g~~~~~~~~p~-~~G~e~~G~V~~v~~~~   86 (296)
                      |++++++.++..     .+.|.+.|+     ||+|||.++|||++|++.++|..+.. ..|. ++|||++|+|+++    
T Consensus         1 m~a~~~~~~~~~~~~~~~~~p~~~p~-----~vlVkv~~~gICGSDlh~~~g~~~~~-~~~~~i~GHE~~G~V~ev----   70 (350)
T COG1063           1 MKAAVVYVGGGDVRLEEPPPPIPGPG-----DVLIRVTATGICGSDLHIYRGGEPFV-PPGDIILGHEFVGEVVEV----   70 (350)
T ss_pred             CceeEEEecCCccccccCCCCCCCCC-----eEEEEEEEEeEchhhhhhccCCCCCC-CCCCcccCccceEEEEEe----
Confidence            455566655533     222235566     99999999999999999999976553 3344 9999999999999    


Q ss_pred             CCCCCCCCCCCCCCCCCEEEEecC------------------------------CCCCcccceEeeeCCceEE-CCCCCC
Q psy1959          87 SSSTEEDDEEDVLQVGDKVLALNK------------------------------ELLHGFSDQCVVHTNDVFK-IPEKMT  135 (296)
Q Consensus        87 ~~~~~~g~~v~~~~~Gd~V~~~~~------------------------------~~~g~~~~~~~v~~~~~~~-iP~~~~  135 (296)
                            | .+..+++||||+..+.                              +.+|+|+||+++|.+++++ +|+++ 
T Consensus        71 ------G-~~~~~~~GdrVvv~~~~~Cg~C~~C~~G~~~~C~~~~~~g~~~~~~~~~G~~aEyv~vp~~~~~~~~pd~~-  142 (350)
T COG1063          71 ------G-VVRGFKVGDRVVVEPNIPCGHCRYCRAGEYNLCENPGFYGYAGLGGGIDGGFAEYVRVPADFNLAKLPDGI-  142 (350)
T ss_pred             ------c-cccCCCCCCEEEECCCcCCCCChhHhCcCcccCCCccccccccccCCCCCceEEEEEeccccCeecCCCCC-
Confidence                  9 6778999999996421                              1358999999999765554 58888 


Q ss_pred             HHHHhhhccHHHHHHHHHHHHcCCCCCcEEEEEcCCCcHHHHHHHHHHHhCCC-EEEEEeCCcchHHHHHh-cCCcEEEE
Q psy1959         136 FEHAASLADSYSTAQIVFSRHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKA-KVIGVCNSEDKTDLIRQ-KGAWAALT  213 (296)
Q Consensus       136 ~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~-~Vi~~~~~~~~~~~~~~-~g~~~~~~  213 (296)
                      ..++|+|.+++.++|++.-.....+++++|+|+|+ |++|+++++++ +..|+ +|++++.+++|++++++ .+++.+.+
T Consensus       143 ~~~~aal~epla~~~~~~a~~~~~~~~~~V~V~Ga-GpIGLla~~~a-~~~Ga~~Viv~d~~~~Rl~~A~~~~g~~~~~~  220 (350)
T COG1063         143 DEEAAALTEPLATAYHGHAERAAVRPGGTVVVVGA-GPIGLLAIALA-KLLGASVVIVVDRSPERLELAKEAGGADVVVN  220 (350)
T ss_pred             ChhhhhhcChhhhhhhhhhhccCCCCCCEEEEECC-CHHHHHHHHHH-HHcCCceEEEeCCCHHHHHHHHHhCCCeEeec
Confidence            55666699999999888545555666669999997 99999999999 66787 89999999999999999 56655555


Q ss_pred             cCCchhHHHHHHHHhCCCcccEEEECCCC-ccHHHHHHHhhccCceEE-----------eecccceeeeeEEeccc
Q psy1959         214 FTNEKSLVNKVLEVSGGKYANVVFEAVGG-EDKTDLIRQKGAWAALTF-----------TNEKSLVNKVLEVSGGK  277 (296)
Q Consensus       214 ~~~~~~~~~~i~~~~~~~g~d~vld~~g~-~~~~~~~~~lg~~~g~~~-----------~~~~~~~~k~~~i~g~~  277 (296)
                      ... .+....+.+.+++.++|++|||+|. +.+..+++++ +++|.+.           ++...++.|++++.|++
T Consensus       221 ~~~-~~~~~~~~~~t~g~g~D~vie~~G~~~~~~~ai~~~-r~gG~v~~vGv~~~~~~~~~~~~~~~kel~l~gs~  294 (350)
T COG1063         221 PSE-DDAGAEILELTGGRGADVVIEAVGSPPALDQALEAL-RPGGTVVVVGVYGGEDIPLPAGLVVSKELTLRGSL  294 (350)
T ss_pred             Ccc-ccHHHHHHHHhCCCCCCEEEECCCCHHHHHHHHHHh-cCCCEEEEEeccCCccCccCHHHHHhcccEEEecc
Confidence            544 3667778888888899999999998 5789999999 7777661           33457888999999984

>PLN02586 probable cinnamyl alcohol dehydrogenase

Probab=100.00  E-value=2e-32  Score=253.07  Aligned_cols=228  Identities=22%  Similarity=0.230  Sum_probs=187.0

Q ss_pred             CCCCCCCCCCCCCCcEEEEeeeeecChhhHHHHcCCCCCCCCCCCcCCCceeEEEEEEccCCCCCCCCCCCCCCCCCCCE
Q psy1959          25 KPTLPLVPGFEFSGTIIEKKMMTRINSSDLLLYNGSGDAKPTLPLVPGFEFSGTVIEVADTKSSSTEEDDEEDVLQVGDK  104 (296)
Q Consensus        25 ~~~p~~~~~~~~~~evlvkv~~~~i~~~D~~~~~g~~~~~~~~p~~~G~e~~G~V~~v~~~~~~~~~~g~~v~~~~~Gd~  104 (296)
                      .|.|.|.++     ||+|||.+++||++|++.+.|.++. ..+|.++|||++|+|+++          |++++.|++||+
T Consensus        30 ~~~p~~~~~-----eVlV~v~~~gic~sD~~~~~g~~~~-~~~p~i~GhE~~G~V~~v----------G~~v~~~~vGdr   93 (360)
T PLN02586         30 FSRRENGDE-----DVTVKILYCGVCHSDLHTIKNEWGF-TRYPIVPGHEIVGIVTKL----------GKNVKKFKEGDR   93 (360)
T ss_pred             ecCCCCCCC-----eEEEEEEEecCChhhHhhhcCCcCC-CCCCccCCcceeEEEEEE----------CCCCCccCCCCE
Confidence            567778888     9999999999999999999886643 357899999999999999          999999999999


Q ss_pred             EEEecC---------------------------------CCCCcccceEeeeCCceEECCCCCCHHHHhhhccHHHHHHH
Q psy1959         105 VLALNK---------------------------------ELLHGFSDQCVVHTNDVFKIPEKMTFEHAASLADSYSTAQI  151 (296)
Q Consensus       105 V~~~~~---------------------------------~~~g~~~~~~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~  151 (296)
                      |+....                                 ..+|+|+||+++|++.++++|++++++++++++..+.|||+
T Consensus        94 V~~~~~~~~Cg~C~~C~~g~~~~C~~~~~~~~~~~~~g~~~~G~~aey~~v~~~~~~~lP~~ls~~~aa~l~~~~~ta~~  173 (360)
T PLN02586         94 VGVGVIVGSCKSCESCDQDLENYCPKMIFTYNSIGHDGTKNYGGYSDMIVVDQHFVLRFPDNLPLDAGAPLLCAGITVYS  173 (360)
T ss_pred             EEEccccCcCCCCccccCCCcccCCCccccccccccCCCcCCCccceEEEEchHHeeeCCCCCCHHHhhhhhcchHHHHH
Confidence            974210                                 11489999999999999999999999999999999999999


Q ss_pred             HHHHHcCCCCCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchH-HHHHhcCCcEEEEcCCchhHHHHHHHHhCC
Q psy1959         152 VFSRHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKT-DLIRQKGAWAALTFTNEKSLVNKVLEVSGG  230 (296)
Q Consensus       152 ~l~~~~~~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~  230 (296)
                      ++.+...+++|++|+|.|+ |++|++++|+| +.+|++|++++.++++. +.++++|++.+++..+ .   +.+.+.++ 
T Consensus       174 al~~~~~~~~g~~VlV~G~-G~vG~~avq~A-k~~Ga~vi~~~~~~~~~~~~~~~~Ga~~vi~~~~-~---~~~~~~~~-  246 (360)
T PLN02586        174 PMKYYGMTEPGKHLGVAGL-GGLGHVAVKIG-KAFGLKVTVISSSSNKEDEAINRLGADSFLVSTD-P---EKMKAAIG-  246 (360)
T ss_pred             HHHHhcccCCCCEEEEECC-CHHHHHHHHHH-HHCCCEEEEEeCCcchhhhHHHhCCCcEEEcCCC-H---HHHHhhcC-
Confidence            9876677789999999886 99999999999 67899998888776664 4557899988887654 2   24444443 


Q ss_pred             CcccEEEECCCC-ccHHHHHHHhhccCceEEe----------ecccceeeeeEEeccc
Q psy1959         231 KYANVVFEAVGG-EDKTDLIRQKGAWAALTFT----------NEKSLVNKVLEVSGGK  277 (296)
Q Consensus       231 ~g~d~vld~~g~-~~~~~~~~~lg~~~g~~~~----------~~~~~~~k~~~i~g~~  277 (296)
                       ++|++||++|+ ..+..+++++ +++|++..          +...++.+++.+.|++
T Consensus       247 -~~D~vid~~g~~~~~~~~~~~l-~~~G~iv~vG~~~~~~~~~~~~~~~~~~~i~g~~  302 (360)
T PLN02586        247 -TMDYIIDTVSAVHALGPLLGLL-KVNGKLITLGLPEKPLELPIFPLVLGRKLVGGSD  302 (360)
T ss_pred             -CCCEEEECCCCHHHHHHHHHHh-cCCcEEEEeCCCCCCCccCHHHHHhCCeEEEEcC
Confidence             69999999998 5789999999 77777632          1223455666676665

>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase

Probab=100.00  E-value=3.6e-32  Score=251.79  Aligned_cols=227  Identities=26%  Similarity=0.300  Sum_probs=194.1

Q ss_pred             CcceEEecCCCCC-----CCCCCCCCCCCCCCcEEEEeeeeecChhhHHHHcCCCCCCCCCCCcCCCceeEEEEEEccCC
Q psy1959          12 SSDLLLYNGSGDA-----KPTLPLVPGFEFSGTIIEKKMMTRINSSDLLLYNGSGDAKPTLPLVPGFEFSGTVIEVADTK   86 (296)
Q Consensus        12 ~~~~~~~~~~~~~-----~~~p~~~~~~~~~~evlvkv~~~~i~~~D~~~~~g~~~~~~~~p~~~G~e~~G~V~~v~~~~   86 (296)
                      .++++++.+.++.     .|.|.|.++     ||+|||.++++|++|++.+.|...  ..+|.++|||++|+|+++    
T Consensus         2 ~~ka~~~~~~~~~~~~~~~~~p~~~~~-----evlVkv~~~gi~~sD~~~~~g~~~--~~~p~i~G~e~~G~V~~v----   70 (365)
T cd08277           2 KCKAAVAWEAGKPLVIEEIEVAPPKAN-----EVRIKMLATSVCHTDILAIEGFKA--TLFPVILGHEGAGIVESV----   70 (365)
T ss_pred             ccEEEEEccCCCCcEEEEEECCCCCCC-----EEEEEEEEEeechhhHHHhcCCCC--CCCCeecccceeEEEEee----
Confidence            4677777765542     577788888     999999999999999999988654  457899999999999999    


Q ss_pred             CCCCCCCCCCCCCCCCCEEEEecCC---------------------------------------------CCCcccceEe
Q psy1959          87 SSSTEEDDEEDVLQVGDKVLALNKE---------------------------------------------LLHGFSDQCV  121 (296)
Q Consensus        87 ~~~~~~g~~v~~~~~Gd~V~~~~~~---------------------------------------------~~g~~~~~~~  121 (296)
                            |++++++++||+|++....                                             ..|+|+||++
T Consensus        71 ------G~~v~~~~~GdrV~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~~ae~~~  144 (365)
T cd08277          71 ------GEGVTNLKPGDKVIPLFIGQCGECSNCRSGKTNLCQKYRANESGLMPDGTSRFTCKGKKIYHFLGTSTFSQYTV  144 (365)
T ss_pred             ------CCCCccCCCCCEEEECCCCCCCCCchhcCcCcccCcCccccccccccCCccccccCCcccccccccccceeeEE
Confidence                  9999999999999875210                                             1378999999


Q ss_pred             eeCCceEECCCCCCHHHHhhhccHHHHHHHHHHHHcCCCCCcEEEEEcCCCcHHHHHHHHHHHhCCC-EEEEEeCCcchH
Q psy1959         122 VHTNDVFKIPEKMTFEHAASLADSYSTAQIVFSRHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKA-KVIGVCNSEDKT  200 (296)
Q Consensus       122 v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~-~Vi~~~~~~~~~  200 (296)
                      ++.+.++++|+++++++++.+.+++.+||+++.+.+++++|++|+|+|+ |++|++++|+| +.+|+ +|+++++++++.
T Consensus       145 v~~~~~~~lP~~l~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlV~G~-g~vG~~~~~~a-~~~G~~~Vi~~~~~~~~~  222 (365)
T cd08277         145 VDENYVAKIDPAAPLEHVCLLGCGFSTGYGAAWNTAKVEPGSTVAVFGL-GAVGLSAIMGA-KIAGASRIIGVDINEDKF  222 (365)
T ss_pred             EchhheEECCCCCCHHHhhHhcchhHHHHHHHHhhcCCCCCCEEEEECC-CHHHHHHHHHH-HHcCCCeEEEEeCCHHHH
Confidence            9999999999999999999999999999998877889999999999985 99999999999 67899 799999999999


Q ss_pred             HHHHhcCCcEEEEcCCc-hhHHHHHHHHhCCCcccEEEECCCC-ccHHHHHHHhhccC-ceE
Q psy1959         201 DLIRQKGAWAALTFTNE-KSLVNKVLEVSGGKYANVVFEAVGG-EDKTDLIRQKGAWA-ALT  259 (296)
Q Consensus       201 ~~~~~~g~~~~~~~~~~-~~~~~~i~~~~~~~g~d~vld~~g~-~~~~~~~~~lg~~~-g~~  259 (296)
                      +.++++|++.+++..+. .++.+.+++.++ .++|++||++|+ ..+..+++++ +.+ |++
T Consensus       223 ~~~~~~ga~~~i~~~~~~~~~~~~~~~~~~-~g~d~vid~~g~~~~~~~~~~~l-~~~~G~~  282 (365)
T cd08277         223 EKAKEFGATDFINPKDSDKPVSEVIREMTG-GGVDYSFECTGNADLMNEALEST-KLGWGVS  282 (365)
T ss_pred             HHHHHcCCCcEeccccccchHHHHHHHHhC-CCCCEEEECCCChHHHHHHHHhc-ccCCCEE
Confidence            99999999888876541 245667777776 589999999997 6788999999 553 655

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i

>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase

Probab=100.00  E-value=5.1e-32  Score=249.25  Aligned_cols=244  Identities=29%  Similarity=0.353  Sum_probs=203.5

Q ss_pred             cceEEecCCCCC----CCCCCCCCCCCCCCcEEEEeeeeecChhhHHHHcCCC-CC---------CCCCCCcCCCceeEE
Q psy1959          13 SDLLLYNGSGDA----KPTLPLVPGFEFSGTIIEKKMMTRINSSDLLLYNGSG-DA---------KPTLPLVPGFEFSGT   78 (296)
Q Consensus        13 ~~~~~~~~~~~~----~~~p~~~~~~~~~~evlvkv~~~~i~~~D~~~~~g~~-~~---------~~~~p~~~G~e~~G~   78 (296)
                      ||++++.++++.    .|.|.|.++     ||+||+.++++|++|+..+.+.. ..         ...+|.++|||++|+
T Consensus         1 mka~~~~~~~~l~~~~~~~p~~~~~-----evlV~v~a~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~p~i~G~e~~G~   75 (351)
T cd08233           1 MKAARYHGRKDIRVEEVPEPPVKPG-----EVKIKVAWCGICGSDLHEYLDGPIFIPTEGHPHLTGETAPVTLGHEFSGV   75 (351)
T ss_pred             CceEEEecCCceEEEeccCCCCCCC-----eEEEEEEEEEECccchHhhcCCCccccccccccccccCCCceecccceEE
Confidence            677888776655    677788888     99999999999999998775421 11         123688999999999


Q ss_pred             EEEEccCCCCCCCCCCCCCCCCCCCEEEEecC--------------------------CCCCcccceEeeeCCceEECCC
Q psy1959          79 VIEVADTKSSSTEEDDEEDVLQVGDKVLALNK--------------------------ELLHGFSDQCVVHTNDVFKIPE  132 (296)
Q Consensus        79 V~~v~~~~~~~~~~g~~v~~~~~Gd~V~~~~~--------------------------~~~g~~~~~~~v~~~~~~~iP~  132 (296)
                      |+++          |++++.+++||+|++...                          ...|+|++|+.++...++++|+
T Consensus        76 V~~v----------G~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~~~~lP~  145 (351)
T cd08233          76 VVEV----------GSGVTGFKVGDRVVVEPTIKCGTCGACKRGLYNLCDSLGFIGLGGGGGGFAEYVVVPAYHVHKLPD  145 (351)
T ss_pred             EEEe----------CCCCCCCCCCCEEEECCCCCCCCChHHhCcCcccCCCCceeccCCCCCceeeEEEechHHeEECcC
Confidence            9999          999999999999987321                          0148999999999999999999


Q ss_pred             CCCHHHHhhhccHHHHHHHHHHHHcCCCCCcEEEEEcCCCcHHHHHHHHHHHhCCC-EEEEEeCCcchHHHHHhcCCcEE
Q psy1959         133 KMTFEHAASLADSYSTAQIVFSRHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKA-KVIGVCNSEDKTDLIRQKGAWAA  211 (296)
Q Consensus       133 ~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~-~Vi~~~~~~~~~~~~~~~g~~~~  211 (296)
                      ++++++++.+ .++.+||+++ ..+++++|++|+|+|+ |++|++++|+| +..|+ +|+++++++++.++++++|++.+
T Consensus       146 ~~~~~~aa~~-~~~~ta~~~l-~~~~~~~g~~vlI~g~-g~vG~~a~q~a-~~~G~~~v~~~~~~~~~~~~~~~~ga~~~  221 (351)
T cd08233         146 NVPLEEAALV-EPLAVAWHAV-RRSGFKPGDTALVLGA-GPIGLLTILAL-KAAGASKIIVSEPSEARRELAEELGATIV  221 (351)
T ss_pred             CCCHHHhhhc-cHHHHHHHHH-HhcCCCCCCEEEEECC-CHHHHHHHHHH-HHcCCCEEEEECCCHHHHHHHHHhCCCEE
Confidence            9999998755 7889999999 7889999999999986 99999999999 67899 89999999999999999999998


Q ss_pred             EEcCCchhHHHHHHHHhCCCcccEEEECCCC-ccHHHHHHHhhccCceEEe----------ecccceeeeeEEeccc
Q psy1959         212 LTFTNEKSLVNKVLEVSGGKYANVVFEAVGG-EDKTDLIRQKGAWAALTFT----------NEKSLVNKVLEVSGGK  277 (296)
Q Consensus       212 ~~~~~~~~~~~~i~~~~~~~g~d~vld~~g~-~~~~~~~~~lg~~~g~~~~----------~~~~~~~k~~~i~g~~  277 (296)
                      +++++ .++.+.+++.++++++|++||++|+ ..+..+++++ +.+|.+..          +...++.|+++|.|..
T Consensus       222 i~~~~-~~~~~~l~~~~~~~~~d~vid~~g~~~~~~~~~~~l-~~~G~~v~~g~~~~~~~~~~~~~~~~~~~i~g~~  296 (351)
T cd08233         222 LDPTE-VDVVAEVRKLTGGGGVDVSFDCAGVQATLDTAIDAL-RPRGTAVNVAIWEKPISFNPNDLVLKEKTLTGSI  296 (351)
T ss_pred             ECCCc-cCHHHHHHHHhCCCCCCEEEECCCCHHHHHHHHHhc-cCCCEEEEEccCCCCCccCHHHHHhhCcEEEEEe
Confidence            88876 6788888888877789999999997 6889999999 77776632          2224556778887764

(2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.

>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase

Probab=100.00  E-value=2.2e-32  Score=251.01  Aligned_cols=232  Identities=20%  Similarity=0.228  Sum_probs=183.1

Q ss_pred             cceEEecCCCCC----CCCCCCCCCCCCCCcEEEEeeeeecChhhHHHHcCCCCC---CCCCCCcCCCceeEEEEEEccC
Q psy1959          13 SDLLLYNGSGDA----KPTLPLVPGFEFSGTIIEKKMMTRINSSDLLLYNGSGDA---KPTLPLVPGFEFSGTVIEVADT   85 (296)
Q Consensus        13 ~~~~~~~~~~~~----~~~p~~~~~~~~~~evlvkv~~~~i~~~D~~~~~g~~~~---~~~~p~~~G~e~~G~V~~v~~~   85 (296)
                      .++++++++++.    .|.| ++++     ||+|||.++|||++|++.+.|.+..   ...+|.++|||++|+|+++   
T Consensus         3 ~~~~~~~~~~~~~~~~~~~P-~~~~-----eVlVkv~a~gIc~sD~~~~~G~~~~~~~~~~~P~i~GhE~~G~V~~~---   73 (341)
T cd08237           3 NQVYRLVRPKFFEVTYEEEN-LRED-----WVIVRPTYLSICHADQRYYQGNRSPEALKKKLPMALIHEGIGVVVSD---   73 (341)
T ss_pred             ccceEEeccceEEEeecCCC-CCCC-----eEEEEEEEEEEcCccHHHHcCCCCcccccCCCCeeccceeEEEEEee---
Confidence            356777777765    5666 3777     9999999999999999999987532   1357999999999999999   


Q ss_pred             CCCCCCCCCCCCCCCCCCEEEEecC----------------------CCCCcccceEeeeCCceEECCCCCCHHHHhhhc
Q psy1959          86 KSSSTEEDDEEDVLQVGDKVLALNK----------------------ELLHGFSDQCVVHTNDVFKIPEKMTFEHAASLA  143 (296)
Q Consensus        86 ~~~~~~~g~~v~~~~~Gd~V~~~~~----------------------~~~g~~~~~~~v~~~~~~~iP~~~~~~~aa~l~  143 (296)
                             |.+  .|++||||+..+.                      +..|+|+||+++|++.++++|++++++++| +.
T Consensus        74 -------g~~--~~~vGdrV~~~~~~~~~~~~~~~~~~c~~~~~~g~~~~G~~aey~~v~~~~~~~vP~~l~~~~aa-~~  143 (341)
T cd08237          74 -------PTG--TYKVGTKVVMVPNTPVEKDEIIPENYLPSSRFRSSGYDGFMQDYVFLPPDRLVKLPDNVDPEVAA-FT  143 (341)
T ss_pred             -------CCC--ccCCCCEEEECCCCCchhcccchhccCCCcceeEecCCCceEEEEEEchHHeEECCCCCChHHhh-hh
Confidence                   764  6999999986431                      124899999999999999999999998876 66


Q ss_pred             cHHHHHHHHHHHH--cCCCCCcEEEEEcCCCcHHHHHHHHHHHhCC-CEEEEEeCCcchHHHHHhcCCcEEEEcCCchhH
Q psy1959         144 DSYSTAQIVFSRH--AKLKEKQTVLVTAAGGGLGLAAVDMATKIYK-AKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSL  220 (296)
Q Consensus       144 ~~~~ta~~~l~~~--~~~~~g~~vlI~Ga~g~vG~aa~~la~~~~g-~~Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  220 (296)
                      .+++++|+++.+.  ..+++|++|+|+|+ |++|++++|+|++..| ++|++++++++|++++++.+.+..+     .++
T Consensus       144 ~~~~~a~~a~~~~~~~~~~~g~~VlV~G~-G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~~~~~~~~-----~~~  217 (341)
T cd08237         144 ELVSVGVHAISRFEQIAHKDRNVIGVWGD-GNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSFADETYLI-----DDI  217 (341)
T ss_pred             chHHHHHHHHHHHhhcCCCCCCEEEEECC-CHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhhcCceeeh-----hhh
Confidence            7999999998543  45689999999996 9999999999954454 5899999999999999876654211     111


Q ss_pred             HHHHHHHhCCCcccEEEECCCC----ccHHHHHHHhhccCceEEe----------ecccceeeeeEEeccc
Q psy1959         221 VNKVLEVSGGKYANVVFEAVGG----EDKTDLIRQKGAWAALTFT----------NEKSLVNKVLEVSGGK  277 (296)
Q Consensus       221 ~~~i~~~~~~~g~d~vld~~g~----~~~~~~~~~lg~~~g~~~~----------~~~~~~~k~~~i~g~~  277 (296)
                      .       ...++|++||++|+    ..+..+++++ +++|++.+          +...++.|+++|.|++
T Consensus       218 ~-------~~~g~d~viD~~G~~~~~~~~~~~~~~l-~~~G~iv~~G~~~~~~~~~~~~~~~k~~~i~g~~  280 (341)
T cd08237         218 P-------EDLAVDHAFECVGGRGSQSAINQIIDYI-RPQGTIGLMGVSEYPVPINTRMVLEKGLTLVGSS  280 (341)
T ss_pred             h-------hccCCcEEEECCCCCccHHHHHHHHHhC-cCCcEEEEEeecCCCcccCHHHHhhCceEEEEec
Confidence            1       12369999999995    3688999999 88877632          2224677889999875

NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (

>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase

Probab=100.00  E-value=1.2e-31  Score=245.67  Aligned_cols=233  Identities=21%  Similarity=0.240  Sum_probs=192.5

Q ss_pred             EeecccCCcceEEecCCCCCCCCCCCCCCCCCCCcEEEEeeeeecChhhHHHHcCCCCCCCCCCCcCCCce--eEEEEEE
Q psy1959           5 IQCCALNSSDLLLYNGSGDAKPTLPLVPGFEFSGTIIEKKMMTRINSSDLLLYNGSGDAKPTLPLVPGFEF--SGTVIEV   82 (296)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~evlvkv~~~~i~~~D~~~~~g~~~~~~~~p~~~G~e~--~G~V~~v   82 (296)
                      ......++.+.+.+....-..+.|+|+++     ||||||.|++||+.|+....|.+......|+++|+++  .|.+..+
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~p~p~~~-----~vlv~v~~~~inp~d~~~~~g~~~~~~~~p~~~g~~~~g~~~~~~v   84 (338)
T cd08295          10 AYVTGFPKESDLELRTTKLTLKVPPGGSG-----DVLVKNLYLSCDPYMRGRMKGHDDSLYLPPFKPGEVITGYGVAKVV   84 (338)
T ss_pred             cCCCCCCCccceEEEEecCCcCCCCCCCC-----eEEEEEEEEeeCHHHHHhhccCCccccCCCcCCCCeEeccEEEEEE
Confidence            33444455555555533333456888999     9999999999999999999885443234578899865  4566668


Q ss_pred             ccCCCCCCCCCCCCCCCCCCCEEEEecCCCCCcccceEeeeC-CceEECC-CCCCHH-HHhhhccHHHHHHHHHHHHcCC
Q psy1959          83 ADTKSSSTEEDDEEDVLQVGDKVLALNKELLHGFSDQCVVHT-NDVFKIP-EKMTFE-HAASLADSYSTAQIVFSRHAKL  159 (296)
Q Consensus        83 ~~~~~~~~~~g~~v~~~~~Gd~V~~~~~~~~g~~~~~~~v~~-~~~~~iP-~~~~~~-~aa~l~~~~~ta~~~l~~~~~~  159 (296)
                                |+++++|++||+|+++     |+|+||+++|+ ..++++| +++++. +++++++++.|||+++.+.+++
T Consensus        85 ----------~~~v~~~~vGd~V~~~-----g~~aey~~v~~~~~~~~lp~~~~~~~~~aa~l~~~~~tA~~~l~~~~~~  149 (338)
T cd08295          85 ----------DSGNPDFKVGDLVWGF-----TGWEEYSLIPRGQDLRKIDHTDVPLSYYLGLLGMPGLTAYAGFYEVCKP  149 (338)
T ss_pred             ----------ecCCCCCCCCCEEEec-----CCceeEEEecchhceeecCCCCCCHHHHHHhcccHHHHHHHHHHHhcCC
Confidence                      7788889999999875     67999999999 7999995 678886 7888999999999999888999


Q ss_pred             CCCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHh-cCCcEEEEcCCchhHHHHHHHHhCCCcccEEEE
Q psy1959         160 KEKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQ-KGAWAALTFTNEKSLVNKVLEVSGGKYANVVFE  238 (296)
Q Consensus       160 ~~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~~~g~d~vld  238 (296)
                      ++|++|+|+|++|++|++++|+| +.+|++|+++++++++.+++++ +|++.++++.+..++.+.+++.++ .++|++||
T Consensus       150 ~~g~~VlI~Ga~G~vG~~aiqlA-k~~G~~Vi~~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~i~~~~~-~gvd~v~d  227 (338)
T cd08295         150 KKGETVFVSAASGAVGQLVGQLA-KLKGCYVVGSAGSDEKVDLLKNKLGFDDAFNYKEEPDLDAALKRYFP-NGIDIYFD  227 (338)
T ss_pred             CCCCEEEEecCccHHHHHHHHHH-HHcCCEEEEEeCCHHHHHHHHHhcCCceeEEcCCcccHHHHHHHhCC-CCcEEEEE
Confidence            99999999999999999999999 6789999999999999999998 999988887542467777777765 68999999


Q ss_pred             CCCCccHHHHHHHhhccCceEE
Q psy1959         239 AVGGEDKTDLIRQKGAWAALTF  260 (296)
Q Consensus       239 ~~g~~~~~~~~~~lg~~~g~~~  260 (296)
                      ++|+..+..+++++ +.+|++.
T Consensus       228 ~~g~~~~~~~~~~l-~~~G~iv  248 (338)
T cd08295         228 NVGGKMLDAVLLNM-NLHGRIA  248 (338)
T ss_pred             CCCHHHHHHHHHHh-ccCcEEE
Confidence            99998899999999 7777764

This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in

>PLN02178 cinnamyl-alcohol dehydrogenase

Probab=100.00  E-value=8.2e-32  Score=250.20  Aligned_cols=229  Identities=22%  Similarity=0.224  Sum_probs=188.3

Q ss_pred             CCCCCCCCCCCCCCcEEEEeeeeecChhhHHHHcCCCCCCCCCCCcCCCceeEEEEEEccCCCCCCCCCCCCCCCCCCCE
Q psy1959          25 KPTLPLVPGFEFSGTIIEKKMMTRINSSDLLLYNGSGDAKPTLPLVPGFEFSGTVIEVADTKSSSTEEDDEEDVLQVGDK  104 (296)
Q Consensus        25 ~~~p~~~~~~~~~~evlvkv~~~~i~~~D~~~~~g~~~~~~~~p~~~G~e~~G~V~~v~~~~~~~~~~g~~v~~~~~Gd~  104 (296)
                      .+.|.|.++     ||+|||.+++||++|++.+.|.+.. ..+|.++|||++|+|+++          |+++.+|++|||
T Consensus        24 ~~~p~~~~~-----eVlVkV~a~gic~sD~~~~~G~~~~-~~~p~i~GhE~aG~Vv~v----------G~~v~~~~vGdr   87 (375)
T PLN02178         24 FSRRENGEN-----DVTVKILFCGVCHSDLHTIKNHWGF-SRYPIIPGHEIVGIATKV----------GKNVTKFKEGDR   87 (375)
T ss_pred             ecCCCCCCC-----eEEEEEEEEcCchHHHHHhcCCCCC-CCCCcccCceeeEEEEEE----------CCCCCccCCCCE
Confidence            566778888     9999999999999999999887643 356899999999999999          999999999999


Q ss_pred             EEEec----C-----------------------------CCCCcccceEeeeCCceEECCCCCCHHHHhhhccHHHHHHH
Q psy1959         105 VLALN----K-----------------------------ELLHGFSDQCVVHTNDVFKIPEKMTFEHAASLADSYSTAQI  151 (296)
Q Consensus       105 V~~~~----~-----------------------------~~~g~~~~~~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~  151 (296)
                      |+...    .                             ...|+|+||+++|++.++++|+++++++++++.+++.++|+
T Consensus        88 V~~~~~~~~cg~C~~C~~g~~~~C~~~~~~~~~~~~~g~~~~G~~aey~~v~~~~~~~lP~~ls~~~aa~l~~~~~ta~~  167 (375)
T PLN02178         88 VGVGVIIGSCQSCESCNQDLENYCPKVVFTYNSRSSDGTRNQGGYSDVIVVDHRFVLSIPDGLPSDSGAPLLCAGITVYS  167 (375)
T ss_pred             EEEcCccCCCCCChhHhCcchhcCCCccccccccccCCCcCCCccccEEEEchHHeEECCCCCCHHHcchhhccchHHHH
Confidence            97421    0                             11589999999999999999999999999999999999999


Q ss_pred             HHHHHcC-CCCCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcch-HHHHHhcCCcEEEEcCCchhHHHHHHHHhC
Q psy1959         152 VFSRHAK-LKEKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDK-TDLIRQKGAWAALTFTNEKSLVNKVLEVSG  229 (296)
Q Consensus       152 ~l~~~~~-~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~  229 (296)
                      ++..... .++|++|+|.|+ |++|++++|+| +.+|++|++++.++++ .+.++++|++.++++.+ .   +.+.+.++
T Consensus       168 al~~~~~~~~~g~~VlV~G~-G~vG~~avq~A-k~~Ga~Vi~~~~~~~~~~~~a~~lGa~~~i~~~~-~---~~v~~~~~  241 (375)
T PLN02178        168 PMKYYGMTKESGKRLGVNGL-GGLGHIAVKIG-KAFGLRVTVISRSSEKEREAIDRLGADSFLVTTD-S---QKMKEAVG  241 (375)
T ss_pred             HHHHhCCCCCCCCEEEEEcc-cHHHHHHHHHH-HHcCCeEEEEeCChHHhHHHHHhCCCcEEEcCcC-H---HHHHHhhC
Confidence            9855433 368999999996 99999999999 6789999998876554 67888999988887654 2   34555543


Q ss_pred             CCcccEEEECCCCc-cHHHHHHHhhccCceEEe----------ecccceeeeeEEecccc
Q psy1959         230 GKYANVVFEAVGGE-DKTDLIRQKGAWAALTFT----------NEKSLVNKVLEVSGGKY  278 (296)
Q Consensus       230 ~~g~d~vld~~g~~-~~~~~~~~lg~~~g~~~~----------~~~~~~~k~~~i~g~~~  278 (296)
                        ++|++||++|.. .+..+++++ +++|++..          +...++.|+++|.|++.
T Consensus       242 --~~D~vid~~G~~~~~~~~~~~l-~~~G~iv~vG~~~~~~~~~~~~~~~~~~~i~g~~~  298 (375)
T PLN02178        242 --TMDFIIDTVSAEHALLPLFSLL-KVSGKLVALGLPEKPLDLPIFPLVLGRKMVGGSQI  298 (375)
T ss_pred             --CCcEEEECCCcHHHHHHHHHhh-cCCCEEEEEccCCCCCccCHHHHHhCCeEEEEeCc
Confidence              699999999985 789999999 77776632          22345678888888763

>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase

Probab=100.00  E-value=7.9e-32  Score=248.05  Aligned_cols=233  Identities=21%  Similarity=0.280  Sum_probs=193.5

Q ss_pred             CCCCCCCCCCCCCCcEEEEeeeeecChhhHHHHcCCCCCCCCCCCcCCCceeEEEEEEccCCCCCCCCCCCCCCCCCCCE
Q psy1959          25 KPTLPLVPGFEFSGTIIEKKMMTRINSSDLLLYNGSGDAKPTLPLVPGFEFSGTVIEVADTKSSSTEEDDEEDVLQVGDK  104 (296)
Q Consensus        25 ~~~p~~~~~~~~~~evlvkv~~~~i~~~D~~~~~g~~~~~~~~p~~~G~e~~G~V~~v~~~~~~~~~~g~~v~~~~~Gd~  104 (296)
                      .|.|.|.++     ||+|||.++++|++|++.+.+.+.....+|.++|||++|+|+++          |+++..+ +||+
T Consensus        16 ~p~P~~~~~-----evlVrv~~~gic~sD~~~~~~~~~~~~~~p~i~GhE~~G~V~~v----------G~~v~~~-~Gdr   79 (349)
T TIGR03201        16 VEIPELGAG-----DVVVKVAGCGVCHTDLSYYYMGVRTNHALPLALGHEISGRVIQA----------GAGAASW-IGKA   79 (349)
T ss_pred             ccCCCCCCC-----eEEEEEEEEeecccchHHHcCCCCccCCCCeeccccceEEEEEe----------CCCcCCC-CCCE
Confidence            677888889     99999999999999999875433222456899999999999999          9998877 9999


Q ss_pred             EEEecC-------------------------CCCCcccceEeeeCCceEECCC------CCCHHHHhhhccHHHHHHHHH
Q psy1959         105 VLALNK-------------------------ELLHGFSDQCVVHTNDVFKIPE------KMTFEHAASLADSYSTAQIVF  153 (296)
Q Consensus       105 V~~~~~-------------------------~~~g~~~~~~~v~~~~~~~iP~------~~~~~~aa~l~~~~~ta~~~l  153 (296)
                      |+....                         +..|+|+||+.++.+.++++|+      ++++++++.++.++.++|+++
T Consensus        80 V~~~~~~~cg~c~~c~~g~~~~c~~~~~~g~~~~G~~ae~~~v~~~~~~~ip~~~~~~~~~~~~~~a~~~~~~~ta~~a~  159 (349)
T TIGR03201        80 VIVPAVIPCGECELCKTGRGTICRAQKMPGNDMQGGFASHIVVPAKGLCVVDEARLAAAGLPLEHVSVVADAVTTPYQAA  159 (349)
T ss_pred             EEECCCCCCCCChhhhCcCcccCCCCCccCcCCCCcccceEEechHHeEECCcccccccCCCHHHhhhhcchHHHHHHHH
Confidence            986210                         1259999999999999999999      899999999999999999998


Q ss_pred             HHHcCCCCCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCcEEEEcCCc--hhHHHHHHHHhCCC
Q psy1959         154 SRHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNE--KSLVNKVLEVSGGK  231 (296)
Q Consensus       154 ~~~~~~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~~~~~~~~~--~~~~~~i~~~~~~~  231 (296)
                      . ..++++|++|+|+|+ |++|++++|+| +..|++|++++++++++++++++|++.++++.+.  .++.+.+.+.++++
T Consensus       160 ~-~~~~~~g~~VlV~G~-G~vG~~a~~~a-~~~G~~vi~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~~~t~~~  236 (349)
T TIGR03201       160 V-QAGLKKGDLVIVIGA-GGVGGYMVQTA-KAMGAAVVAIDIDPEKLEMMKGFGADLTLNPKDKSAREVKKLIKAFAKAR  236 (349)
T ss_pred             H-hcCCCCCCEEEEECC-CHHHHHHHHHH-HHcCCeEEEEcCCHHHHHHHHHhCCceEecCccccHHHHHHHHHhhcccC
Confidence            5 588999999999998 99999999999 6689999999999999999999999888877542  35677778888777


Q ss_pred             ccc----EEEECCCC-ccHHHHHHHhhccCceEEee----------cccceeeeeEEeccc
Q psy1959         232 YAN----VVFEAVGG-EDKTDLIRQKGAWAALTFTN----------EKSLVNKVLEVSGGK  277 (296)
Q Consensus       232 g~d----~vld~~g~-~~~~~~~~~lg~~~g~~~~~----------~~~~~~k~~~i~g~~  277 (296)
                      ++|    ++|||+|+ ..+..+++++ +.+|++.+-          ...++.+.+++.|++
T Consensus       237 g~d~~~d~v~d~~g~~~~~~~~~~~l-~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~~g~~  296 (349)
T TIGR03201       237 GLRSTGWKIFECSGSKPGQESALSLL-SHGGTLVVVGYTMAKTEYRLSNLMAFHARALGNW  296 (349)
T ss_pred             CCCCCcCEEEECCCChHHHHHHHHHH-hcCCeEEEECcCCCCcccCHHHHhhcccEEEEEe
Confidence            886    89999998 5678899999 777776321          223445566777654

Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.

>cd08230 glucose_DH Glucose dehydrogenase

Probab=100.00  E-value=6e-32  Score=249.35  Aligned_cols=238  Identities=19%  Similarity=0.217  Sum_probs=184.9

Q ss_pred             cceEEecCCCC-C----CCCCCCCCCCCCCCcEEEEeeeeecChhhHHHHcCCCCCCC--CCCCcCCCceeEEEEEEccC
Q psy1959          13 SDLLLYNGSGD-A----KPTLPLVPGFEFSGTIIEKKMMTRINSSDLLLYNGSGDAKP--TLPLVPGFEFSGTVIEVADT   85 (296)
Q Consensus        13 ~~~~~~~~~~~-~----~~~p~~~~~~~~~~evlvkv~~~~i~~~D~~~~~g~~~~~~--~~p~~~G~e~~G~V~~v~~~   85 (296)
                      |++++++.++. .    .|.|+|.++     ||||||.+++||++|++.++|.++..+  .+|.++|||++|+|+++   
T Consensus         1 mka~~~~~~~~~l~~~~~p~p~~~~~-----evlVkv~a~gi~~~D~~~~~g~~~~~~~~~~p~i~G~e~~G~V~~v---   72 (355)
T cd08230           1 MKAIAVKPGKPGVRVVDIPEPEPTPG-----EVLVRTLEVGVCGTDREIVAGEYGTAPPGEDFLVLGHEALGVVEEV---   72 (355)
T ss_pred             CceeEecCCCCCCeEEeCCCCCCCCC-----eEEEEEEEEEeccccHHHHcCCCCCCCCCCCCeeeccccceEEEEe---
Confidence            56677764332 2    678888889     999999999999999999998764322  35789999999999999   


Q ss_pred             CCCCCCCCCCCCCCCCCCEEEEecC----------------------------CCCCcccceEeeeCCceEECCCCCCHH
Q psy1959          86 KSSSTEEDDEEDVLQVGDKVLALNK----------------------------ELLHGFSDQCVVHTNDVFKIPEKMTFE  137 (296)
Q Consensus        86 ~~~~~~~g~~v~~~~~Gd~V~~~~~----------------------------~~~g~~~~~~~v~~~~~~~iP~~~~~~  137 (296)
                             |++ +.|++||||+....                            ...|+|+||+.++++.++++|++++  
T Consensus        73 -------G~~-~~~~vGdrV~~~~~~~cg~C~~c~~g~~~~c~~~~~~~~g~~~~~G~~aey~~~~~~~~~~~P~~~~--  142 (355)
T cd08230          73 -------GDG-SGLSPGDLVVPTVRRPPGKCLNCRIGRPDFCETGEYTERGIKGLHGFMREYFVDDPEYLVKVPPSLA--  142 (355)
T ss_pred             -------cCC-CCCCCCCEEEeccccCCCcChhhhCcCcccCCCcceeccCcCCCCccceeEEEeccccEEECCCCCC--
Confidence                   888 88999999986431                            1248899999999999999999999  


Q ss_pred             HHhhhccHHHHHHHHHHH------HcCCCCCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeC---CcchHHHHHhcCC
Q psy1959         138 HAASLADSYSTAQIVFSR------HAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCN---SEDKTDLIRQKGA  208 (296)
Q Consensus       138 ~aa~l~~~~~ta~~~l~~------~~~~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~---~~~~~~~~~~~g~  208 (296)
                      +++++..++++++.++..      ..+.++|++|+|+|+ |++|++++|+| +..|++|+++++   +++|+++++++|+
T Consensus       143 ~~a~~~~p~~~~~~a~~~~~~~~~~~~~~~g~~vlI~G~-G~vG~~a~q~a-k~~G~~vi~~~~~~~~~~~~~~~~~~Ga  220 (355)
T cd08230         143 DVGVLLEPLSVVEKAIEQAEAVQKRLPTWNPRRALVLGA-GPIGLLAALLL-RLRGFEVYVLNRRDPPDPKADIVEELGA  220 (355)
T ss_pred             cceeecchHHHHHHHHHHHhhhhhhcccCCCCEEEEECC-CHHHHHHHHHH-HHcCCeEEEEecCCCCHHHHHHHHHcCC
Confidence            344566777776655432      223578999999996 99999999999 678999999987   5789999999999


Q ss_pred             cEEEEcCCchhHHHHHHHHhCCCcccEEEECCCC-ccHHHHHHHhhccCceEEee----------------cccceeeee
Q psy1959         209 WAALTFTNEKSLVNKVLEVSGGKYANVVFEAVGG-EDKTDLIRQKGAWAALTFTN----------------EKSLVNKVL  271 (296)
Q Consensus       209 ~~~~~~~~~~~~~~~i~~~~~~~g~d~vld~~g~-~~~~~~~~~lg~~~g~~~~~----------------~~~~~~k~~  271 (296)
                      +. +++.+ .++.+ . ..  ..++|++||++|. ..+..+++++ +.+|.+.+-                ...++.|++
T Consensus       221 ~~-v~~~~-~~~~~-~-~~--~~~~d~vid~~g~~~~~~~~~~~l-~~~G~~v~~G~~~~~~~~~~~~~~~~~~~~~k~~  293 (355)
T cd08230         221 TY-VNSSK-TPVAE-V-KL--VGEFDLIIEATGVPPLAFEALPAL-APNGVVILFGVPGGGREFEVDGGELNRDLVLGNK  293 (355)
T ss_pred             EE-ecCCc-cchhh-h-hh--cCCCCEEEECcCCHHHHHHHHHHc-cCCcEEEEEecCCCCCccccChhhhhhhHhhcCc
Confidence            86 45544 33333 2 11  3489999999998 5789999999 777766321                123456888


Q ss_pred             EEeccc
Q psy1959         272 EVSGGK  277 (296)
Q Consensus       272 ~i~g~~  277 (296)
                      ++.|+.
T Consensus       294 ~i~g~~  299 (355)
T cd08230         294 ALVGSV  299 (355)
T ss_pred             EEEEec
Confidence            888875

Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai

>cd08293 PTGR2 Prostaglandin reductase

Probab=100.00  E-value=1.4e-31  Score=245.52  Aligned_cols=214  Identities=19%  Similarity=0.277  Sum_probs=180.5

Q ss_pred             CCCCCCC-CCCCCCCcEEEEeeeeecChhhHHHHcCCC--CCCCCCCCcCCCceeEEEEEEccCCCCCCCCCCCCCCCCC
Q psy1959          25 KPTLPLV-PGFEFSGTIIEKKMMTRINSSDLLLYNGSG--DAKPTLPLVPGFEFSGTVIEVADTKSSSTEEDDEEDVLQV  101 (296)
Q Consensus        25 ~~~p~~~-~~~~~~~evlvkv~~~~i~~~D~~~~~g~~--~~~~~~p~~~G~e~~G~V~~v~~~~~~~~~~g~~v~~~~~  101 (296)
                      .|.|.|. ++     ||||||.|+|||+.|........  ....++|.++|||++|+|+++          |+++++|++
T Consensus        28 ~~~p~~~~~~-----evlV~v~a~gin~~d~~~~~~~~~~~~~~~~~~~~G~e~~G~V~~v----------G~~v~~~~~   92 (345)
T cd08293          28 CTLPDELNEG-----QVLVRTLYLSVDPYMRCRMNEDTGTDYLAPWQLSQVLDGGGVGVVE----------ESKHQKFAV   92 (345)
T ss_pred             ccCCCCCCCC-----eEEEEEEEEecCHHHHhhcccccccccCCCccCCCceEeeEEEEEe----------ccCCCCCCC
Confidence            5677664 88     99999999999999864332111  112346789999999999999          999999999


Q ss_pred             CCEEEEecCCCCCcccceEeeeCCceEECCCCCCHH----HHhhhccHHHHHHHHHHHHcCCCCC--cEEEEEcCCCcHH
Q psy1959         102 GDKVLALNKELLHGFSDQCVVHTNDVFKIPEKMTFE----HAASLADSYSTAQIVFSRHAKLKEK--QTVLVTAAGGGLG  175 (296)
Q Consensus       102 Gd~V~~~~~~~~g~~~~~~~v~~~~~~~iP~~~~~~----~aa~l~~~~~ta~~~l~~~~~~~~g--~~vlI~Ga~g~vG  175 (296)
                      ||+|+++.    ++|+||++++++.++++|++++..    .+++++.++.|||+++.+.+++++|  ++|+|+|++|++|
T Consensus        93 Gd~V~~~~----~~~ae~~~v~~~~~~~iP~~~~~~~~~~~~a~~~~~~~ta~~al~~~~~~~~g~~~~VlI~ga~g~vG  168 (345)
T cd08293          93 GDIVTSFN----WPWQTYAVLDGSSLEKVDPQLVDGHLSYFLGAVGLPGLTALIGIQEKGHITPGANQTMVVSGAAGACG  168 (345)
T ss_pred             CCEEEecC----CCceeEEEecHHHeEEcCccccccchhHHhhhcCcHHHHHHHHHHHhccCCCCCCCEEEEECCCcHHH
Confidence            99998752    679999999999999999985432    1456788999999999888888877  9999999999999


Q ss_pred             HHHHHHHHHhCCC-EEEEEeCCcchHHHHHh-cCCcEEEEcCCchhHHHHHHHHhCCCcccEEEECCCCccHHHHHHHhh
Q psy1959         176 LAAVDMATKIYKA-KVIGVCNSEDKTDLIRQ-KGAWAALTFTNEKSLVNKVLEVSGGKYANVVFEAVGGEDKTDLIRQKG  253 (296)
Q Consensus       176 ~aa~~la~~~~g~-~Vi~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~~~g~d~vld~~g~~~~~~~~~~lg  253 (296)
                      ++++|+| +.+|+ +|+++++++++.+++++ +|++.++++++ .++.+.+++.++ +++|++||++|+..+..+++++ 
T Consensus       169 ~~aiqlA-k~~G~~~Vi~~~~s~~~~~~~~~~lGa~~vi~~~~-~~~~~~i~~~~~-~gvd~vid~~g~~~~~~~~~~l-  244 (345)
T cd08293         169 SLAGQIG-RLLGCSRVVGICGSDEKCQLLKSELGFDAAINYKT-DNVAERLRELCP-EGVDVYFDNVGGEISDTVISQM-  244 (345)
T ss_pred             HHHHHHH-HHcCCCEEEEEcCCHHHHHHHHHhcCCcEEEECCC-CCHHHHHHHHCC-CCceEEEECCCcHHHHHHHHHh-
Confidence            9999999 67899 89999999999999876 99999888876 678888888775 6899999999998889999999 


Q ss_pred             ccCceEEe
Q psy1959         254 AWAALTFT  261 (296)
Q Consensus       254 ~~~g~~~~  261 (296)
                      +.+|++..
T Consensus       245 ~~~G~iv~  252 (345)
T cd08293         245 NENSHIIL  252 (345)
T ss_pred             ccCCEEEE
Confidence            88887643

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid

>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional

Probab=100.00  E-value=2e-31  Score=244.93  Aligned_cols=241  Identities=22%  Similarity=0.260  Sum_probs=195.9

Q ss_pred             cceEEecCCCCC----CCCCCC-CCCCCCCCcEEEEeeeeecChhhHHHHcCCCCCCCCCCCcCCCceeEEEEEEccCCC
Q psy1959          13 SDLLLYNGSGDA----KPTLPL-VPGFEFSGTIIEKKMMTRINSSDLLLYNGSGDAKPTLPLVPGFEFSGTVIEVADTKS   87 (296)
Q Consensus        13 ~~~~~~~~~~~~----~~~p~~-~~~~~~~~evlvkv~~~~i~~~D~~~~~g~~~~~~~~p~~~G~e~~G~V~~v~~~~~   87 (296)
                      |++++++++++.    .|.|.| .++     ||+|||.++++|++|...+.....  ..+|.++|||++|+|+++     
T Consensus         1 Mka~~~~~~~~~~~~~~~~P~~~~~~-----evlV~v~~~gi~~~D~~~~~~~~~--~~~p~i~G~e~~G~V~~v-----   68 (347)
T PRK10309          1 MKSVVNDTDGIVRVAESPIPEIKHQD-----DVLVKVASSGLCGSDIPRIFKNGA--HYYPITLGHEFSGYVEAV-----   68 (347)
T ss_pred             CceEEEeCCCceEEEECCCCCCCCCC-----EEEEEEEEEEEchhcHHHHhCCCC--CCCCcccccceEEEEEEe-----
Confidence            678888876655    567776 478     999999999999999875432111  235889999999999999     


Q ss_pred             CCCCCCCCCCCCCCCCEEEEecC-------------------------CCCCcccceEeeeCCceEECCCCCCHHHHhhh
Q psy1959          88 SSTEEDDEEDVLQVGDKVLALNK-------------------------ELLHGFSDQCVVHTNDVFKIPEKMTFEHAASL  142 (296)
Q Consensus        88 ~~~~~g~~v~~~~~Gd~V~~~~~-------------------------~~~g~~~~~~~v~~~~~~~iP~~~~~~~aa~l  142 (296)
                           |+++.+|++||+|++...                         +..|+|+||+.++.+.++++|+++++++++.+
T Consensus        69 -----G~~v~~~~vGd~V~~~~~~~c~~c~~c~~g~~~~c~~~~~~g~~~~G~~aey~~v~~~~~~~lP~~~s~~~aa~~  143 (347)
T PRK10309         69 -----GSGVDDLHPGDAVACVPLLPCFTCPECLRGFYSLCAKYDFIGSRRDGGNAEYIVVKRKNLFALPTDMPIEDGAFI  143 (347)
T ss_pred             -----CCCCCCCCCCCEEEECCCcCCCCCcchhCcCcccCCCcceeccCCCCccceeEEeehHHeEECcCCCCHHHhhhh
Confidence                 999999999999997531                         12589999999999999999999999999865


Q ss_pred             ccHHHHHHHHHHHHcCCCCCcEEEEEcCCCcHHHHHHHHHHHhCCCE-EEEEeCCcchHHHHHhcCCcEEEEcCCchhHH
Q psy1959         143 ADSYSTAQIVFSRHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKAK-VIGVCNSEDKTDLIRQKGAWAALTFTNEKSLV  221 (296)
Q Consensus       143 ~~~~~ta~~~l~~~~~~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~~-Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  221 (296)
                       .+++++|+++ +...+++|++|+|+|+ |++|++++|+| +.+|++ |+++++++++.+.++++|++.++++++ .+ .
T Consensus       144 -~~~~~~~~~~-~~~~~~~g~~vlV~G~-g~vG~~~~~~a-~~~G~~~v~~~~~~~~~~~~~~~~Ga~~~i~~~~-~~-~  217 (347)
T PRK10309        144 -EPITVGLHAF-HLAQGCEGKNVIIIGA-GTIGLLAIQCA-VALGAKSVTAIDINSEKLALAKSLGAMQTFNSRE-MS-A  217 (347)
T ss_pred             -hHHHHHHHHH-HhcCCCCCCEEEEECC-CHHHHHHHHHH-HHcCCCeEEEECCCHHHHHHHHHcCCceEecCcc-cC-H
Confidence             3667788886 6778899999999985 99999999999 678996 788889999999999999988888765 34 4


Q ss_pred             HHHHHHhCCCccc-EEEECCCC-ccHHHHHHHhhccCceEEeec-------------ccceeeeeEEeccc
Q psy1959         222 NKVLEVSGGKYAN-VVFEAVGG-EDKTDLIRQKGAWAALTFTNE-------------KSLVNKVLEVSGGK  277 (296)
Q Consensus       222 ~~i~~~~~~~g~d-~vld~~g~-~~~~~~~~~lg~~~g~~~~~~-------------~~~~~k~~~i~g~~  277 (296)
                      +.+.+.+.+.++| ++|||+|+ ..+..+++++ +++|.+.+-.             ..++.|+++|.|++
T Consensus       218 ~~~~~~~~~~~~d~~v~d~~G~~~~~~~~~~~l-~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~~~i~g~~  287 (347)
T PRK10309        218 PQIQSVLRELRFDQLILETAGVPQTVELAIEIA-GPRAQLALVGTLHHDLHLTSATFGKILRKELTVIGSW  287 (347)
T ss_pred             HHHHHHhcCCCCCeEEEECCCCHHHHHHHHHHh-hcCCEEEEEccCCCCcccChhhhhHHhhcCcEEEEEe
Confidence            5567777667888 99999998 5889999999 7777774321             13566888888875

>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein

Probab=100.00  E-value=1.7e-31  Score=243.98  Aligned_cols=222  Identities=14%  Similarity=0.077  Sum_probs=187.6

Q ss_pred             CCCCCCCCCCCCCCcEEEEeeeeecChhhHHHHcCCCCCCCCCCCcCCCceeEEEEEEccCCCCCCCCCCCCCCCCCCCE
Q psy1959          25 KPTLPLVPGFEFSGTIIEKKMMTRINSSDLLLYNGSGDAKPTLPLVPGFEFSGTVIEVADTKSSSTEEDDEEDVLQVGDK  104 (296)
Q Consensus        25 ~~~p~~~~~~~~~~evlvkv~~~~i~~~D~~~~~g~~~~~~~~p~~~G~e~~G~V~~v~~~~~~~~~~g~~v~~~~~Gd~  104 (296)
                      .|.|.|.++     ||+|||.+++||++|++.+.|.++. ..+|.++|||++|+|+++          |++++.+++||+
T Consensus        20 ~p~P~~~~~-----evlVkv~~~gi~~~D~~~~~g~~~~-~~~p~i~G~e~~G~V~~v----------G~~v~~~~~Gd~   83 (329)
T TIGR02822        20 RPVPRPGPG-----ELLVRVRACGVCRTDLHVSEGDLPV-HRPRVTPGHEVVGEVAGR----------GADAGGFAVGDR   83 (329)
T ss_pred             CCCCCCCCC-----eEEEEEEEEeecchhHHHHcCCCCC-CCCCccCCcceEEEEEEE----------CCCCcccCCCCE
Confidence            678888899     9999999999999999999987643 234789999999999999          999999999999


Q ss_pred             EEEecC--------------------------CCCCcccceEeeeCCceEECCCCCCHHHHhhhccHHHHHHHHHHHHcC
Q psy1959         105 VLALNK--------------------------ELLHGFSDQCVVHTNDVFKIPEKMTFEHAASLADSYSTAQIVFSRHAK  158 (296)
Q Consensus       105 V~~~~~--------------------------~~~g~~~~~~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~l~~~~~  158 (296)
                      |+....                          ...|+|+||+.++...++++|+++++++++.+++++.+||+++ ..++
T Consensus        84 V~~~~~~~~c~~c~~c~~g~~~~c~~~~~~g~~~~G~~aey~~v~~~~~~~lP~~~~~~~aa~l~~~~~ta~~~~-~~~~  162 (329)
T TIGR02822        84 VGIAWLRRTCGVCRYCRRGAENLCPASRYTGWDTDGGYAEYTTVPAAFAYRLPTGYDDVELAPLLCAGIIGYRAL-LRAS  162 (329)
T ss_pred             EEEcCccCcCCCChHHhCcCcccCCCcccCCcccCCcceeEEEeccccEEECCCCCCHHHhHHHhccchHHHHHH-HhcC
Confidence            974210                          1248999999999999999999999999999999999999999 4689


Q ss_pred             CCCCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCcEEEEcCCchhHHHHHHHHhCCCcccEEEE
Q psy1959         159 LKEKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNKVLEVSGGKYANVVFE  238 (296)
Q Consensus       159 ~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~g~d~vld  238 (296)
                      +++|++|+|+|+ |++|++++|+| +..|++|++++++++|+++++++|++.+++..+ .          ..+++|++++
T Consensus       163 ~~~g~~VlV~G~-g~iG~~a~~~a-~~~G~~vi~~~~~~~~~~~a~~~Ga~~vi~~~~-~----------~~~~~d~~i~  229 (329)
T TIGR02822       163 LPPGGRLGLYGF-GGSAHLTAQVA-LAQGATVHVMTRGAAARRLALALGAASAGGAYD-T----------PPEPLDAAIL  229 (329)
T ss_pred             CCCCCEEEEEcC-CHHHHHHHHHH-HHCCCeEEEEeCChHHHHHHHHhCCceeccccc-c----------CcccceEEEE
Confidence            999999999997 99999999999 678999999999999999999999998876532 1          1236899999


Q ss_pred             CCCC-ccHHHHHHHhhccCceEEee-----------cccceeeeeEEeccc
Q psy1959         239 AVGG-EDKTDLIRQKGAWAALTFTN-----------EKSLVNKVLEVSGGK  277 (296)
Q Consensus       239 ~~g~-~~~~~~~~~lg~~~g~~~~~-----------~~~~~~k~~~i~g~~  277 (296)
                      +.+. +.+..+++++ +++|++.+-           ...++.|++++.+++
T Consensus       230 ~~~~~~~~~~~~~~l-~~~G~~v~~G~~~~~~~~~~~~~~~~~~~~i~g~~  279 (329)
T TIGR02822       230 FAPAGGLVPPALEAL-DRGGVLAVAGIHLTDTPPLNYQRHLFYERQIRSVT  279 (329)
T ss_pred             CCCcHHHHHHHHHhh-CCCcEEEEEeccCccCCCCCHHHHhhCCcEEEEee
Confidence            8876 7899999999 888877431           113455677777765

Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.

>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH)

Probab=100.00  E-value=3.2e-31  Score=244.78  Aligned_cols=245  Identities=25%  Similarity=0.347  Sum_probs=202.5

Q ss_pred             ceEEecCCCCC-----CCCCCCCCCCCCCCcEEEEeeeeecChhhHHHHcCCCCCCCCCCCcCCCceeEEEEEEccCCCC
Q psy1959          14 DLLLYNGSGDA-----KPTLPLVPGFEFSGTIIEKKMMTRINSSDLLLYNGSGDAKPTLPLVPGFEFSGTVIEVADTKSS   88 (296)
Q Consensus        14 ~~~~~~~~~~~-----~~~p~~~~~~~~~~evlvkv~~~~i~~~D~~~~~g~~~~~~~~p~~~G~e~~G~V~~v~~~~~~   88 (296)
                      |++++.++++.     .|.|.|.++     ||+|||.++++|++|+....|.++. ..+|.++|||++|+|+++      
T Consensus         2 ka~~~~~~~~~l~~~~~~~p~~~~~-----evlV~v~a~~l~~~d~~~~~g~~~~-~~~p~~~G~e~~G~V~~v------   69 (361)
T cd08231           2 RAAVLTGPGKPLEIREVPLPDLEPG-----AVLVRVRLAGVCGSDVHTVAGRRPR-VPLPIILGHEGVGRVVAL------   69 (361)
T ss_pred             eEEEEcCCCCCCEEEeccCCCCCCC-----eEEEEEEEEeecCccHHHhcCCCCC-CCCCcccccCCceEEEEe------
Confidence            56667766633     677888888     9999999999999999999887653 456889999999999999      


Q ss_pred             CCCCCCCCCC------CCCCCEEEEecC--------------------------------CCCCcccceEeeeCC-ceEE
Q psy1959          89 STEEDDEEDV------LQVGDKVLALNK--------------------------------ELLHGFSDQCVVHTN-DVFK  129 (296)
Q Consensus        89 ~~~~g~~v~~------~~~Gd~V~~~~~--------------------------------~~~g~~~~~~~v~~~-~~~~  129 (296)
                          |+++..      |++||+|+++..                                ...|+|++|+.++++ .+++
T Consensus        70 ----G~~v~~~~~~~~~~~Gd~V~~~~~~~~~~c~~~~~~~~~~c~~~~~~~~~~~~~~~~~~g~~a~~~~v~~~~~~~~  145 (361)
T cd08231          70 ----GGGVTTDVAGEPLKVGDRVTWSVGAPCGRCYRCLVGDPTKCENRKKYGHEASCDDPHLSGGYAEHIYLPPGTAIVR  145 (361)
T ss_pred             ----CCCccccccCCccCCCCEEEEcccCCCCCChhHhCcCccccccchhccccccccCCCCCcccceEEEecCCCceEE
Confidence                998876      999999998621                                124899999999996 7999


Q ss_pred             CCCCCCHHHHhhhccHHHHHHHHHHHHcCCCCCcEEEEEcCCCcHHHHHHHHHHHhCCC-EEEEEeCCcchHHHHHhcCC
Q psy1959         130 IPEKMTFEHAASLADSYSTAQIVFSRHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKA-KVIGVCNSEDKTDLIRQKGA  208 (296)
Q Consensus       130 iP~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~-~Vi~~~~~~~~~~~~~~~g~  208 (296)
                      +|++++.+.++.++++++|||+++.+....++|++|+|+|+ |++|++++++| +..|+ +|+++++++++.++++++|+
T Consensus       146 lP~~~~~~~aa~~~~~~~ta~~al~~~~~~~~g~~vlI~g~-g~vG~~~~~la-k~~G~~~v~~~~~~~~~~~~~~~~g~  223 (361)
T cd08231         146 VPDNVPDEVAAPANCALATVLAALDRAGPVGAGDTVVVQGA-GPLGLYAVAAA-KLAGARRVIVIDGSPERLELAREFGA  223 (361)
T ss_pred             CCCCCCHHHHHHhcCHHHHHHHHHHhccCCCCCCEEEEECC-CHHHHHHHHHH-HHcCCCeEEEEcCCHHHHHHHHHcCC
Confidence            99999999999888999999999977777779999999985 99999999999 66899 99999999999999999999


Q ss_pred             cEEEEcCCc--hhHHHHHHHHhCCCcccEEEECCCC-ccHHHHHHHhhccCceEEeec------------ccceeeeeEE
Q psy1959         209 WAALTFTNE--KSLVNKVLEVSGGKYANVVFEAVGG-EDKTDLIRQKGAWAALTFTNE------------KSLVNKVLEV  273 (296)
Q Consensus       209 ~~~~~~~~~--~~~~~~i~~~~~~~g~d~vld~~g~-~~~~~~~~~lg~~~g~~~~~~------------~~~~~k~~~i  273 (296)
                      +.++++++.  .++...+.+.++++++|++||++|+ ..+..+++++ +.+|++..-.            ..++.+++++
T Consensus       224 ~~vi~~~~~~~~~~~~~i~~~~~~~~~d~vid~~g~~~~~~~~~~~l-~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~  302 (361)
T cd08231         224 DATIDIDELPDPQRRAIVRDITGGRGADVVIEASGHPAAVPEGLELL-RRGGTYVLVGSVAPAGTVPLDPERIVRKNLTI  302 (361)
T ss_pred             CeEEcCcccccHHHHHHHHHHhCCCCCcEEEECCCChHHHHHHHHHh-ccCCEEEEEcCCCCCCccccCHHHHhhcccEE
Confidence            888777541  1233567788877899999999997 6788999999 7777664321            1136677777


Q ss_pred             eccc
Q psy1959         274 SGGK  277 (296)
Q Consensus       274 ~g~~  277 (296)
                      .+.+
T Consensus       303 ~~~~  306 (361)
T cd08231         303 IGVH  306 (361)
T ss_pred             EEcc
Confidence            7665

This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino

>PLN02514 cinnamyl-alcohol dehydrogenase

Probab=100.00  E-value=5e-31  Score=243.50  Aligned_cols=241  Identities=21%  Similarity=0.195  Sum_probs=197.6

Q ss_pred             CcceEEecCCCCC-----CCCCCCCCCCCCCCcEEEEeeeeecChhhHHHHcCCCCCCCCCCCcCCCceeEEEEEEccCC
Q psy1959          12 SSDLLLYNGSGDA-----KPTLPLVPGFEFSGTIIEKKMMTRINSSDLLLYNGSGDAKPTLPLVPGFEFSGTVIEVADTK   86 (296)
Q Consensus        12 ~~~~~~~~~~~~~-----~~~p~~~~~~~~~~evlvkv~~~~i~~~D~~~~~g~~~~~~~~p~~~G~e~~G~V~~v~~~~   86 (296)
                      .++++++.+++..     +|.|.|.++     ||+|||.+++||++|+..+.|.+.. ..+|.++|||++|+|+++    
T Consensus         9 ~~~~~~~~~~~~~~~~~~~~~p~~~~~-----eVlVrv~a~gi~~~D~~~~~g~~~~-~~~p~i~G~E~~G~Vv~v----   78 (357)
T PLN02514          9 KTTGWAARDPSGHLSPYTYTLRKTGPE-----DVVIKVIYCGICHTDLHQIKNDLGM-SNYPMVPGHEVVGEVVEV----   78 (357)
T ss_pred             eEEEEEEecCCCCceEEeecCCCCCCC-----cEEEEEEEeccChHHHHhhcCCcCc-CCCCccCCceeeEEEEEE----
Confidence            3677888887764     677788888     9999999999999999999887643 356889999999999999    


Q ss_pred             CCCCCCCCCCCCCCCCCEEEEec---------------------------------CCCCCcccceEeeeCCceEECCCC
Q psy1959          87 SSSTEEDDEEDVLQVGDKVLALN---------------------------------KELLHGFSDQCVVHTNDVFKIPEK  133 (296)
Q Consensus        87 ~~~~~~g~~v~~~~~Gd~V~~~~---------------------------------~~~~g~~~~~~~v~~~~~~~iP~~  133 (296)
                            |++++.|++||+|+...                                 ....|+|+||+.++...++++|++
T Consensus        79 ------G~~v~~~~~Gd~V~~~~~~~~c~~C~~c~~g~~~~c~~~~~~~~~~~~~g~~~~G~~aey~~v~~~~~~~iP~~  152 (357)
T PLN02514         79 ------GSDVSKFTVGDIVGVGVIVGCCGECSPCKSDLEQYCNKRIWSYNDVYTDGKPTQGGFASAMVVDQKFVVKIPEG  152 (357)
T ss_pred             ------CCCcccccCCCEEEEcCccccCCCChhHhCCCcccCCCccccccccccCCccCCCccccEEEEchHHeEECCCC
Confidence                  99999999999997421                                 012489999999999999999999


Q ss_pred             CCHHHHhhhccHHHHHHHHHHHHcCCCCCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHH-HhcCCcEEE
Q psy1959         134 MTFEHAASLADSYSTAQIVFSRHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLI-RQKGAWAAL  212 (296)
Q Consensus       134 ~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~-~~~g~~~~~  212 (296)
                      ++++++++++.++.+||+++.+....++|++++|+|+ |++|++++|+| +..|++|++++.++++...+ +++|++.++
T Consensus       153 ~~~~~aa~l~~~~~ta~~al~~~~~~~~g~~vlV~G~-G~vG~~av~~A-k~~G~~vi~~~~~~~~~~~~~~~~Ga~~~i  230 (357)
T PLN02514        153 MAPEQAAPLLCAGVTVYSPLSHFGLKQSGLRGGILGL-GGVGHMGVKIA-KAMGHHVTVISSSDKKREEALEHLGADDYL  230 (357)
T ss_pred             CCHHHhhhhhhhHHHHHHHHHHcccCCCCCeEEEEcc-cHHHHHHHHHH-HHCCCeEEEEeCCHHHHHHHHHhcCCcEEe
Confidence            9999999999999999999976666789999999975 99999999999 67899999888887776555 568998776


Q ss_pred             EcCCchhHHHHHHHHhCCCcccEEEECCCC-ccHHHHHHHhhccCceEEe----------ecccceeeeeEEeccc
Q psy1959         213 TFTNEKSLVNKVLEVSGGKYANVVFEAVGG-EDKTDLIRQKGAWAALTFT----------NEKSLVNKVLEVSGGK  277 (296)
Q Consensus       213 ~~~~~~~~~~~i~~~~~~~g~d~vld~~g~-~~~~~~~~~lg~~~g~~~~----------~~~~~~~k~~~i~g~~  277 (296)
                      +..+ .   +.+.+.+  .++|++||++|. ..+..+++++ +++|++..          +...++.+++++.|++
T Consensus       231 ~~~~-~---~~~~~~~--~~~D~vid~~g~~~~~~~~~~~l-~~~G~iv~~G~~~~~~~~~~~~~~~~~~~i~g~~  299 (357)
T PLN02514        231 VSSD-A---AEMQEAA--DSLDYIIDTVPVFHPLEPYLSLL-KLDGKLILMGVINTPLQFVTPMLMLGRKVITGSF  299 (357)
T ss_pred             cCCC-h---HHHHHhc--CCCcEEEECCCchHHHHHHHHHh-ccCCEEEEECCCCCCCcccHHHHhhCCcEEEEEe
Confidence            6543 2   2344444  279999999997 6889999999 77776632          2235667888888875

>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase

Probab=100.00  E-value=4.4e-31  Score=248.18  Aligned_cols=248  Identities=17%  Similarity=0.179  Sum_probs=192.2

Q ss_pred             CcceEEecCCCCC----CCCCCCCCCCCCCCcEEEEeeeeecChhhHHHH-cCCCCC-----CCCCCCcCCCceeEEEEE
Q psy1959          12 SSDLLLYNGSGDA----KPTLPLVPGFEFSGTIIEKKMMTRINSSDLLLY-NGSGDA-----KPTLPLVPGFEFSGTVIE   81 (296)
Q Consensus        12 ~~~~~~~~~~~~~----~~~p~~~~~~~~~~evlvkv~~~~i~~~D~~~~-~g~~~~-----~~~~p~~~G~e~~G~V~~   81 (296)
                      .|++++++++++.    .|.|.|.++     ||+|||.++|||++|++.+ .|....     ...+|.++|||++|+|++
T Consensus         2 ~~~a~~~~~~~~l~~~e~p~P~~~~~-----eVlVkV~a~gic~sD~~~~~~g~~~~~~~~~~~~~p~i~GhE~~G~V~~   76 (410)
T cd08238           2 KTKAWRMYGKGDLRLEKFELPEIADD-----EILVRVISDSLCFSTWKLALQGSDHKKVPNDLAKEPVILGHEFAGTILK   76 (410)
T ss_pred             CcEEEEEEcCCceEEEecCCCCCCCC-----eEEEEEEEeccCCCCHHHHhcCCccccCcccccCCCceeccccEEEEEE
Confidence            3778888887765    577778888     9999999999999999976 454211     124688999999999999


Q ss_pred             EccCCCCCCCCCCCCC-CCCCCCEEEEecC--------------CCCCcccceEeeeCC----ceEECCCCCCHHHHhhh
Q psy1959          82 VADTKSSSTEEDDEED-VLQVGDKVLALNK--------------ELLHGFSDQCVVHTN----DVFKIPEKMTFEHAASL  142 (296)
Q Consensus        82 v~~~~~~~~~~g~~v~-~~~~Gd~V~~~~~--------------~~~g~~~~~~~v~~~----~~~~iP~~~~~~~aa~l  142 (296)
                      +          |++++ .|++||||+....              ...|+|+||++++.+    .++++|+++++++++.+
T Consensus        77 v----------G~~v~~~~~vGdrV~~~~~~~c~~~~~c~~~g~~~~G~~aey~~v~~~~~~~~~~~lP~~l~~~~aal~  146 (410)
T cd08238          77 V----------GKKWQGKYKPGQRFVIQPALILPDGPSCPGYSYTYPGGLATYHIIPNEVMEQDCLLIYEGDGYAEASLV  146 (410)
T ss_pred             e----------CCCccCCCCCCCEEEEcCCcCCCCCCCCCCccccCCCcceEEEEecHHhccCCeEECCCCCCHHHHhhc
Confidence            9          99998 6999999987521              125999999999987    68999999999988743


Q ss_pred             ccHHHH---HHHHH--------HHHcCCCCCcEEEEEcCCCcHHHHHHHHHHHhCCC---EEEEEeCCcchHHHHHhc--
Q psy1959         143 ADSYST---AQIVF--------SRHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKA---KVIGVCNSEDKTDLIRQK--  206 (296)
Q Consensus       143 ~~~~~t---a~~~l--------~~~~~~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~---~Vi~~~~~~~~~~~~~~~--  206 (296)
                       .++.+   ++.++        .+.+++++|++|+|+|++|++|++++|+| +..|+   +|++++.+++|++.++++  
T Consensus       147 -epl~~~~~~~~a~~~~~~~~~~~~~~~~~g~~VlV~G~~G~vG~~aiq~a-k~~G~g~~~Vi~~~~~~~r~~~a~~~~~  224 (410)
T cd08238         147 -EPLSCVIGAYTANYHLQPGEYRHRMGIKPGGNTAILGGAGPMGLMAIDYA-IHGPIGPSLLVVTDVNDERLARAQRLFP  224 (410)
T ss_pred             -chHHHHHHHhhhcccccccchhhhcCCCCCCEEEEEeCCCHHHHHHHHHH-HhcccCCceEEEEcCCHHHHHHHHHhcc
Confidence             33332   33332        24578899999999998899999999999 55543   899999999999999997  


Q ss_pred             ------CCc-EEEEcCCchhHHHHHHHHhCCCcccEEEECCCC-ccHHHHHHHhhccCceE-Ee------------eccc
Q psy1959         207 ------GAW-AALTFTNEKSLVNKVLEVSGGKYANVVFEAVGG-EDKTDLIRQKGAWAALT-FT------------NEKS  265 (296)
Q Consensus       207 ------g~~-~~~~~~~~~~~~~~i~~~~~~~g~d~vld~~g~-~~~~~~~~~lg~~~g~~-~~------------~~~~  265 (296)
                            |++ .++++++..++.+.+++.++++++|+++|++|. +.+..+++++ +++|.+ .+            +...
T Consensus       225 ~~~~~~Ga~~~~i~~~~~~~~~~~v~~~t~g~g~D~vid~~g~~~~~~~a~~~l-~~~G~~v~~~g~~~~~~~~~~~~~~  303 (410)
T cd08238         225 PEAASRGIELLYVNPATIDDLHATLMELTGGQGFDDVFVFVPVPELVEEADTLL-APDGCLNFFAGPVDKNFSAPLNFYN  303 (410)
T ss_pred             ccccccCceEEEECCCccccHHHHHHHHhCCCCCCEEEEcCCCHHHHHHHHHHh-ccCCeEEEEEccCCCCccccccHHH
Confidence                  665 345554324677788888888899999999987 7899999999 655543 22            1124


Q ss_pred             ceeeeeEEeccc
Q psy1959         266 LVNKVLEVSGGK  277 (296)
Q Consensus       266 ~~~k~~~i~g~~  277 (296)
                      ++.|+++|.|+.
T Consensus       304 ~~~~~~~i~g~~  315 (410)
T cd08238         304 VHYNNTHYVGTS  315 (410)
T ss_pred             hhhcCcEEEEeC
Confidence            567788888765

L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found

>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase

Probab=100.00  E-value=1.2e-30  Score=237.66  Aligned_cols=224  Identities=20%  Similarity=0.247  Sum_probs=186.9

Q ss_pred             eeEeecccCCcceEEecCCCCCCCCCCCCCCCCCCCcEEEEeeeeecChhhHHHHcCCCCCCCCCCCcCCCceeEEEEEE
Q psy1959           3 IDIQCCALNSSDLLLYNGSGDAKPTLPLVPGFEFSGTIIEKKMMTRINSSDLLLYNGSGDAKPTLPLVPGFEFSGTVIEV   82 (296)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~evlvkv~~~~i~~~D~~~~~g~~~~~~~~p~~~G~e~~G~V~~v   82 (296)
                      ++......++...+.+.    ..|.|.|+++     ||||||.|+++|+.+.   .|.+.. ...|.++|+|++|+|+++
T Consensus         6 ~~~~~~~~~~~~~l~~~----~~~~p~~~~~-----evlv~v~a~~~n~~~~---~g~~~~-~~~~~i~G~~~~g~v~~~   72 (325)
T TIGR02825         6 LKKHFVGYPTDSDFELK----TVELPPLNNG-----EVLLEALFLSVDPYMR---VAAKRL-KEGDTMMGQQVARVVESK   72 (325)
T ss_pred             EecCCCCCCCCCceEEE----eccCCCCCCC-----cEEEEEEEEecCHHHh---cccCcC-CCCCcEecceEEEEEEeC
Confidence            44445556666666665    3678888999     9999999999999654   444332 234789999999999998


Q ss_pred             ccCCCCCCCCCCCCCCCCCCCEEEEecCCCCCcccceEeeeCCceEEC----CCCCCHHHH-hhhccHHHHHHHHHHHHc
Q psy1959          83 ADTKSSSTEEDDEEDVLQVGDKVLALNKELLHGFSDQCVVHTNDVFKI----PEKMTFEHA-ASLADSYSTAQIVFSRHA  157 (296)
Q Consensus        83 ~~~~~~~~~~g~~v~~~~~Gd~V~~~~~~~~g~~~~~~~v~~~~~~~i----P~~~~~~~a-a~l~~~~~ta~~~l~~~~  157 (296)
                                |+   .|++||+|+++     ++|++|++++.+.+.++    |++++++++ +++++++.|||+++.+.+
T Consensus        73 ----------~~---~~~~GdrV~~~-----~~~~~~~~~~~~~~~~l~~~~p~~~~~~~aaa~l~~~~~TA~~~l~~~~  134 (325)
T TIGR02825        73 ----------NV---ALPKGTIVLAS-----PGWTSHSISDGKDLEKLLTEWPDTLPLSLALGTVGMPGLTAYFGLLEIC  134 (325)
T ss_pred             ----------CC---CCCCCCEEEEe-----cCceeeEEechhheEEccccccCCCCHHHHHHhcccHHHHHHHHHHHHh
Confidence                      63   59999999986     45999999999888777    999999987 678999999999998889


Q ss_pred             CCCCCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCcEEEEcCCchhHHHHHHHHhCCCcccEEE
Q psy1959         158 KLKEKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNKVLEVSGGKYANVVF  237 (296)
Q Consensus       158 ~~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~g~d~vl  237 (296)
                      ++++|++|+|+|++|++|++++|+| +..|++|+++++++++.++++++|++.++++++...+.+.+.... ++++|++|
T Consensus       135 ~~~~g~~VLI~ga~g~vG~~aiqlA-k~~G~~Vi~~~~s~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~~~-~~gvdvv~  212 (325)
T TIGR02825       135 GVKGGETVMVNAAAGAVGSVVGQIA-KLKGCKVVGAAGSDEKVAYLKKLGFDVAFNYKTVKSLEETLKKAS-PDGYDCYF  212 (325)
T ss_pred             CCCCCCEEEEeCCccHHHHHHHHHH-HHcCCEEEEEeCCHHHHHHHHHcCCCEEEeccccccHHHHHHHhC-CCCeEEEE
Confidence            9999999999999999999999999 678999999999999999999999999998875235555565554 45899999


Q ss_pred             ECCCCccHHHHHHHhhccCceEE
Q psy1959         238 EAVGGEDKTDLIRQKGAWAALTF  260 (296)
Q Consensus       238 d~~g~~~~~~~~~~lg~~~g~~~  260 (296)
                      |++|++.+..+++++ +++|++.
T Consensus       213 d~~G~~~~~~~~~~l-~~~G~iv  234 (325)
T TIGR02825       213 DNVGGEFSNTVIGQM-KKFGRIA  234 (325)
T ss_pred             ECCCHHHHHHHHHHh-CcCcEEE
Confidence            999998889999999 8887774

Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.

>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase

Probab=99.98  E-value=3.2e-31  Score=240.06  Aligned_cols=229  Identities=19%  Similarity=0.219  Sum_probs=176.4

Q ss_pred             CcceEEecCCCCC----CCCCCCCCCCCCCCcEEEEeeeeecC-hhhHHHHcCCCCCC--CCCCCcCCCceeEEEEEEcc
Q psy1959          12 SSDLLLYNGSGDA----KPTLPLVPGFEFSGTIIEKKMMTRIN-SSDLLLYNGSGDAK--PTLPLVPGFEFSGTVIEVAD   84 (296)
Q Consensus        12 ~~~~~~~~~~~~~----~~~p~~~~~~~~~~evlvkv~~~~i~-~~D~~~~~g~~~~~--~~~p~~~G~e~~G~V~~v~~   84 (296)
                      +++++++.+++..    .|.|.|.++     ||+|||.+++|| ++|+..+.|.++..  ..+|.++|||++|+|+++  
T Consensus         1 ~~ka~~~~~~~~l~~~e~~~p~~~~~-----evlVkv~~~gi~~~~D~~~~~G~~~~~~~~~~P~i~GhE~~G~V~~v--   73 (308)
T TIGR01202         1 KTQAIVLSGPNQIELREVTLTPPSPG-----DLVVEIWYSGISTGTEKLFWNGLMPPFPGMGYPLVPGYESVGRVVEA--   73 (308)
T ss_pred             CceEEEEeCCCeEEEEEecCCCCCCC-----eEEEEEEEEeeccCchhHHhcCCCCCCCCCCCCccCcceeEEEEEEe--
Confidence            3567777766655    677788889     999999999996 79999998876532  357999999999999999  


Q ss_pred             CCCCCCCCCCCCCCCCCCCEEEEecC-------CCCCcccceEeeeCCceEECCCCCCHHHHhhhccHHHHHHHHHHHHc
Q psy1959          85 TKSSSTEEDDEEDVLQVGDKVLALNK-------ELLHGFSDQCVVHTNDVFKIPEKMTFEHAASLADSYSTAQIVFSRHA  157 (296)
Q Consensus        85 ~~~~~~~~g~~v~~~~~Gd~V~~~~~-------~~~g~~~~~~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~l~~~~  157 (296)
                              |+++ .|++||||+....       ...|+|+||+++|++.++++|++++++. +.+ .++.+||+++.+ .
T Consensus        74 --------G~~v-~~~vGdrV~~~~~~c~~~~~~~~G~~aey~~v~~~~~~~ip~~~~~~~-a~~-~~~~~a~~~~~~-~  141 (308)
T TIGR01202        74 --------GPDT-GFRPGDRVFVPGSNCYEDVRGLFGGASKRLVTPASRVCRLDPALGPQG-ALL-ALAATARHAVAG-A  141 (308)
T ss_pred             --------cCCC-CCCCCCEEEEeCccccccccccCCcccceEEcCHHHceeCCCCCCHHH-Hhh-hHHHHHHHHHHh-c
Confidence                    9988 5999999986421       1249999999999999999999999864 434 467999999854 3


Q ss_pred             CCCCCcEEEEEcCCCcHHHHHHHHHHHhCCCE-EEEEeCCcchHHHHHhcCCcEEEEcCCchhHHHHHHHHhCCCcccEE
Q psy1959         158 KLKEKQTVLVTAAGGGLGLAAVDMATKIYKAK-VIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNKVLEVSGGKYANVV  236 (296)
Q Consensus       158 ~~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~~-Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~g~d~v  236 (296)
                       ..++++++|+|+ |++|++++|+| +.+|++ |++++..+++++.+...   .++++.+  .         .+.++|++
T Consensus       142 -~~~~~~vlV~G~-G~vG~~a~q~a-k~~G~~~v~~~~~~~~rl~~a~~~---~~i~~~~--~---------~~~g~Dvv  204 (308)
T TIGR01202       142 -EVKVLPDLIVGH-GTLGRLLARLT-KAAGGSPPAVWETNPRRRDGATGY---EVLDPEK--D---------PRRDYRAI  204 (308)
T ss_pred             -ccCCCcEEEECC-CHHHHHHHHHH-HHcCCceEEEeCCCHHHHHhhhhc---cccChhh--c---------cCCCCCEE
Confidence             336889999986 99999999999 678997 55566666676665443   2333321  0         24589999


Q ss_pred             EECCCC-ccHHHHHHHhhccCceEEe----------ecccceeeeeEEeccc
Q psy1959         237 FEAVGG-EDKTDLIRQKGAWAALTFT----------NEKSLVNKVLEVSGGK  277 (296)
Q Consensus       237 ld~~g~-~~~~~~~~~lg~~~g~~~~----------~~~~~~~k~~~i~g~~  277 (296)
                      |||+|+ ..++.+++++ +++|++.+          +...++.|++++.++.
T Consensus       205 id~~G~~~~~~~~~~~l-~~~G~iv~~G~~~~~~~~~~~~~~~~~~~i~~~~  255 (308)
T TIGR01202       205 YDASGDPSLIDTLVRRL-AKGGEIVLAGFYTEPVNFDFVPAFMKEARLRIAA  255 (308)
T ss_pred             EECCCCHHHHHHHHHhh-hcCcEEEEEeecCCCcccccchhhhcceEEEEec
Confidence            999999 4789999999 88877742          2234566777777754

>PTZ00354 alcohol dehydrogenase; Provisional

Probab=99.98  E-value=2.3e-30  Score=235.52  Aligned_cols=229  Identities=27%  Similarity=0.407  Sum_probs=198.8

Q ss_pred             CcceEEecCCCCC-------CCCCCCCCCCCCCCcEEEEeeeeecChhhHHHHcCCCCCCCCCCCcCCCceeEEEEEEcc
Q psy1959          12 SSDLLLYNGSGDA-------KPTLPLVPGFEFSGTIIEKKMMTRINSSDLLLYNGSGDAKPTLPLVPGFEFSGTVIEVAD   84 (296)
Q Consensus        12 ~~~~~~~~~~~~~-------~~~p~~~~~~~~~~evlvkv~~~~i~~~D~~~~~g~~~~~~~~p~~~G~e~~G~V~~v~~   84 (296)
                      +||++++.++++.       .+.|.+.++     ||+|||.++++|+.|.....|.+......|.++|+|++|+|+++  
T Consensus         1 ~m~a~~~~~~~~~~~~~~~~~~~~~~~~~-----~v~v~v~~~~i~~~d~~~~~~~~~~~~~~~~~~g~e~~G~v~~v--   73 (334)
T PTZ00354          1 MMRAVTLKGFGGVDVLKIGESPKPAPKRN-----DVLIKVSAAGVNRADTLQRQGKYPPPPGSSEILGLEVAGYVEDV--   73 (334)
T ss_pred             CcEEEEEEecCCCcceEEEeCCCCCCCCC-----EEEEEEEEEecCHHHHHHhCCCCCCCCCCCcccceeeEEEEEEe--
Confidence            4677777766542       344566778     99999999999999999998866544455778999999999999  


Q ss_pred             CCCCCCCCCCCCCCCCCCCEEEEecCCCCCcccceEeeeCCceEECCCCCCHHHHhhhccHHHHHHHHHHHHcCCCCCcE
Q psy1959          85 TKSSSTEEDDEEDVLQVGDKVLALNKELLHGFSDQCVVHTNDVFKIPEKMTFEHAASLADSYSTAQIVFSRHAKLKEKQT  164 (296)
Q Consensus        85 ~~~~~~~~g~~v~~~~~Gd~V~~~~~~~~g~~~~~~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~  164 (296)
                              |+++..+++||+|+++..  .|+|++|++++.+.++++|++++..+++.++.++.+||.++....++++|++
T Consensus        74 --------G~~v~~~~~Gd~V~~~~~--~g~~~~~~~v~~~~~~~ip~~~~~~~a~~~~~~~~ta~~~l~~~~~~~~~~~  143 (334)
T PTZ00354         74 --------GSDVKRFKEGDRVMALLP--GGGYAEYAVAHKGHVMHIPQGYTFEEAAAIPEAFLTAWQLLKKHGDVKKGQS  143 (334)
T ss_pred             --------CCCCCCCCCCCEEEEecC--CCceeeEEEecHHHcEeCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCCE
Confidence                    999989999999999854  4899999999999999999999999999999999999999988889999999


Q ss_pred             EEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCcEEEEcCCchh-HHHHHHHHhCCCcccEEEECCCCc
Q psy1959         165 VLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKS-LVNKVLEVSGGKYANVVFEAVGGE  243 (296)
Q Consensus       165 vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~i~~~~~~~g~d~vld~~g~~  243 (296)
                      ++|+|++|++|++++++| +..|++++++++++++.+.++++|++.+++... .+ +.+.+.+.++++++|+++|++|++
T Consensus       144 vlI~ga~g~~g~~~~~~a-~~~g~~v~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~~~~~~~~~~~d~~i~~~~~~  221 (334)
T PTZ00354        144 VLIHAGASGVGTAAAQLA-EKYGAATIITTSSEEKVDFCKKLAAIILIRYPD-EEGFAPKVKKLTGEKGVNLVLDCVGGS  221 (334)
T ss_pred             EEEEcCCchHHHHHHHHH-HHcCCEEEEEeCCHHHHHHHHHcCCcEEEecCC-hhHHHHHHHHHhCCCCceEEEECCchH
Confidence            999999999999999999 678999888999999999999999987887765 44 777788888778999999999988


Q ss_pred             cHHHHHHHhhccCceEE
Q psy1959         244 DKTDLIRQKGAWAALTF  260 (296)
Q Consensus       244 ~~~~~~~~lg~~~g~~~  260 (296)
                      .+..+++++ ..+|.+.
T Consensus       222 ~~~~~~~~l-~~~g~~i  237 (334)
T PTZ00354        222 YLSETAEVL-AVDGKWI  237 (334)
T ss_pred             HHHHHHHHh-ccCCeEE
Confidence            999999999 6666663

>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase

Probab=99.98  E-value=1.5e-30  Score=240.89  Aligned_cols=228  Identities=23%  Similarity=0.247  Sum_probs=197.1

Q ss_pred             CcceEEecCCCCC-----CCCCCCCCCCCCCCcEEEEeeeeecChhhHHHHcCCCCCCCCCCCcCCCceeEEEEEEccCC
Q psy1959          12 SSDLLLYNGSGDA-----KPTLPLVPGFEFSGTIIEKKMMTRINSSDLLLYNGSGDAKPTLPLVPGFEFSGTVIEVADTK   86 (296)
Q Consensus        12 ~~~~~~~~~~~~~-----~~~p~~~~~~~~~~evlvkv~~~~i~~~D~~~~~g~~~~~~~~p~~~G~e~~G~V~~v~~~~   86 (296)
                      +|+++++++++..     .|.|.+.++     ||+||+.++++|++|+....|.++  ..+|.++|+|++|+|+++    
T Consensus         2 ~~~a~~~~~~~~~~~~~~~~~p~~~~~-----~v~Vkv~a~gi~~~d~~~~~g~~~--~~~p~v~G~e~~G~V~~v----   70 (365)
T cd08278           2 KTTAAVVREPGGPFVLEDVELDDPRPD-----EVLVRIVATGICHTDLVVRDGGLP--TPLPAVLGHEGAGVVEAV----   70 (365)
T ss_pred             ccEEeeeccCCCcceEEEeecCCCCCC-----eEEEEEEEeecCcccHHHhcCCCC--CCCCcccccceeEEEEEe----
Confidence            5788998875433     567777888     999999999999999999988765  346889999999999999    


Q ss_pred             CCCCCCCCCCCCCCCCCEEEEecC-----------------------------------------------CCCCcccce
Q psy1959          87 SSSTEEDDEEDVLQVGDKVLALNK-----------------------------------------------ELLHGFSDQ  119 (296)
Q Consensus        87 ~~~~~~g~~v~~~~~Gd~V~~~~~-----------------------------------------------~~~g~~~~~  119 (296)
                            |+++.++++||+|++...                                               -..|+|++|
T Consensus        71 ------G~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~y  144 (365)
T cd08278          71 ------GSAVTGLKPGDHVVLSFASCGECANCLSGHPAYCENFFPLNFSGRRPDGSTPLSLDDGTPVHGHFFGQSSFATY  144 (365)
T ss_pred             ------CCCcccCCCCCEEEEcccCCCCChHHhCCCcccccCcccccccccccCCcccccccCCcccccccccccceeeE
Confidence                  999999999999985210                                               013889999


Q ss_pred             EeeeCCceEECCCCCCHHHHhhhccHHHHHHHHHHHHcCCCCCcEEEEEcCCCcHHHHHHHHHHHhCCC-EEEEEeCCcc
Q psy1959         120 CVVHTNDVFKIPEKMTFEHAASLADSYSTAQIVFSRHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKA-KVIGVCNSED  198 (296)
Q Consensus       120 ~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~-~Vi~~~~~~~  198 (296)
                      +.++.++++++|+++++++++.+++++.+||.++.....++++++|+|+|+ |++|++++++| +..|+ .+++++++++
T Consensus       145 ~~v~~~~~~~iP~~~s~~~a~~l~~~~~ta~~~~~~~~~~~~g~~vlI~g~-g~vG~~~~~la-~~~G~~~v~~~~~~~~  222 (365)
T cd08278         145 AVVHERNVVKVDKDVPLELLAPLGCGIQTGAGAVLNVLKPRPGSSIAVFGA-GAVGLAAVMAA-KIAGCTTIIAVDIVDS  222 (365)
T ss_pred             EEecchhEEECCCCCCHHHhhhhcchhhhhhHHHhhhcCCCCCCEEEEECC-CHHHHHHHHHH-HHcCCCeEEEEeCCHH
Confidence            999999999999999999999999999999999888889999999999975 99999999999 67899 6888989999


Q ss_pred             hHHHHHhcCCcEEEEcCCchhHHHHHHHHhCCCcccEEEECCCC-ccHHHHHHHhhccCceEEe
Q psy1959         199 KTDLIRQKGAWAALTFTNEKSLVNKVLEVSGGKYANVVFEAVGG-EDKTDLIRQKGAWAALTFT  261 (296)
Q Consensus       199 ~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~g~d~vld~~g~-~~~~~~~~~lg~~~g~~~~  261 (296)
                      |.+.++++|++.++++.+ .++.+.+.+.+ ++++|+++||+|+ ..+..+++++ +.+|.+..
T Consensus       223 k~~~~~~~g~~~~i~~~~-~~~~~~v~~~~-~~~~d~vld~~g~~~~~~~~~~~l-~~~G~~v~  283 (365)
T cd08278         223 RLELAKELGATHVINPKE-EDLVAAIREIT-GGGVDYALDTTGVPAVIEQAVDAL-APRGTLAL  283 (365)
T ss_pred             HHHHHHHcCCcEEecCCC-cCHHHHHHHHh-CCCCcEEEECCCCcHHHHHHHHHh-ccCCEEEE
Confidence            999999999988888766 56777788877 6789999999997 6889999999 77776643

Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu

>cd05284 arabinose_DH_like D-arabinose dehydrogenase

Probab=99.98  E-value=2.9e-30  Score=236.14  Aligned_cols=245  Identities=28%  Similarity=0.309  Sum_probs=203.7

Q ss_pred             cceEEecCCCCC-----CCCCCCCCCCCCCCcEEEEeeeeecChhhHHHHcCCCC--CCCCCCCcCCCceeEEEEEEccC
Q psy1959          13 SDLLLYNGSGDA-----KPTLPLVPGFEFSGTIIEKKMMTRINSSDLLLYNGSGD--AKPTLPLVPGFEFSGTVIEVADT   85 (296)
Q Consensus        13 ~~~~~~~~~~~~-----~~~p~~~~~~~~~~evlvkv~~~~i~~~D~~~~~g~~~--~~~~~p~~~G~e~~G~V~~v~~~   85 (296)
                      ||++++++++..     .+.|.+.++     +|+||+.++++|++|+....|.+.  ....+|.++|+|++|+|+++   
T Consensus         1 ~ka~~~~~~~~~~~~~~~~~~~~~~~-----~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~~~G~e~~G~V~~v---   72 (340)
T cd05284           1 MKAARLYEYGKPLRLEDVPVPEPGPG-----QVLVRVGGAGVCHSDLHVIDGVWGGILPYKLPFTLGHENAGWVEEV---   72 (340)
T ss_pred             CeeeEeccCCCCceEEeCCCCCCCCC-----eEEEEEEEEeecchhHHHHcCCCcccccCCCCeecccceeEEEEEe---
Confidence            577888766443     466677778     999999999999999999988765  34456889999999999999   


Q ss_pred             CCCCCCCCCCCCCCCCCCEEEEecC-------------------------CCCCcccceEeeeCCceEECCCCCCHHHHh
Q psy1959          86 KSSSTEEDDEEDVLQVGDKVLALNK-------------------------ELLHGFSDQCVVHTNDVFKIPEKMTFEHAA  140 (296)
Q Consensus        86 ~~~~~~~g~~v~~~~~Gd~V~~~~~-------------------------~~~g~~~~~~~v~~~~~~~iP~~~~~~~aa  140 (296)
                             |+++..+++||+|+++..                         ...|+|++|+.++.+.++++|+++++++++
T Consensus        73 -------G~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~~P~~ls~~~aa  145 (340)
T cd05284          73 -------GSGVDGLKEGDPVVVHPPWGCGTCRYCRRGEENYCENARFPGIGTDGGFAEYLLVPSRRLVKLPRGLDPVEAA  145 (340)
T ss_pred             -------CCCCCcCcCCCEEEEcCCCCCCCChHHhCcCcccCCCCcccCccCCCcceeeEEecHHHeEECCCCCCHHHhh
Confidence                   999999999999998641                         124899999999999999999999999999


Q ss_pred             hhccHHHHHHHHHHHH-cCCCCCcEEEEEcCCCcHHHHHHHHHHHhCC-CEEEEEeCCcchHHHHHhcCCcEEEEcCCch
Q psy1959         141 SLADSYSTAQIVFSRH-AKLKEKQTVLVTAAGGGLGLAAVDMATKIYK-AKVIGVCNSEDKTDLIRQKGAWAALTFTNEK  218 (296)
Q Consensus       141 ~l~~~~~ta~~~l~~~-~~~~~g~~vlI~Ga~g~vG~aa~~la~~~~g-~~Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~  218 (296)
                      .++..+.+||+++... ..+.++++|+|+|+ |++|++++++| +..| .+|+++++++++.+.++++|++.++++++ .
T Consensus       146 ~l~~~~~ta~~~l~~~~~~~~~~~~vlI~g~-~~vg~~~~~~a-~~~g~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~-~  222 (340)
T cd05284         146 PLADAGLTAYHAVKKALPYLDPGSTVVVIGV-GGLGHIAVQIL-RALTPATVIAVDRSEEALKLAERLGADHVLNASD-D  222 (340)
T ss_pred             hhcchHHHHHHHHHHhcccCCCCCEEEEEcC-cHHHHHHHHHH-HHhCCCcEEEEeCCHHHHHHHHHhCCcEEEcCCc-c
Confidence            9999999999999766 46889999999995 77999999999 5677 79999999999999999999988888876 4


Q ss_pred             hHHHHHHHHhCCCcccEEEECCCC-ccHHHHHHHhhccCceEEeec---------ccceeeeeEEeccc
Q psy1959         219 SLVNKVLEVSGGKYANVVFEAVGG-EDKTDLIRQKGAWAALTFTNE---------KSLVNKVLEVSGGK  277 (296)
Q Consensus       219 ~~~~~i~~~~~~~g~d~vld~~g~-~~~~~~~~~lg~~~g~~~~~~---------~~~~~k~~~i~g~~  277 (296)
                       +.+.+++..++.++|+++|++|+ .....+++++ +.+|++..-.         ...+.+++++.+..
T Consensus       223 -~~~~i~~~~~~~~~dvvld~~g~~~~~~~~~~~l-~~~g~~i~~g~~~~~~~~~~~~~~~~~~~~~~~  289 (340)
T cd05284         223 -VVEEVRELTGGRGADAVIDFVGSDETLALAAKLL-AKGGRYVIVGYGGHGRLPTSDLVPTEISVIGSL  289 (340)
T ss_pred             -HHHHHHHHhCCCCCCEEEEcCCCHHHHHHHHHHh-hcCCEEEEEcCCCCCccCHHHhhhcceEEEEEe
Confidence             77788888777789999999997 7889999999 7777664221         11145667766653

This group contains arabinose dehydrogenase (AraDH) and related alcohol dehydrogenases. AraDH is a member of the medium chain dehydrogenase/reductase family and catalyzes the NAD(P)-dependent oxidation of D-arabinose and other pentoses, the initial step in the metabolism of d-arabinose into 2-oxoglutarate. Like the alcohol dehydrogenases, AraDH binds a zinc in the catalytic cleft as well as a distal structural zinc. AraDH forms homotetramers as a dimer of dimers. AraDH replaces a conserved catalytic His with replace with Arg, compared to the canonical ADH site. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol d

>PLN03154 putative allyl alcohol dehydrogenase; Provisional

Probab=99.98  E-value=3.1e-30  Score=237.42  Aligned_cols=224  Identities=21%  Similarity=0.267  Sum_probs=186.2

Q ss_pred             CCCCCCCCCcEEEEeeeeecChhhHHHHcCCCCCCCCCCCcCCC--ceeEEEEEEccCCCCCCCCCCCCCCCCCCCEEEE
Q psy1959          30 LVPGFEFSGTIIEKKMMTRINSSDLLLYNGSGDAKPTLPLVPGF--EFSGTVIEVADTKSSSTEEDDEEDVLQVGDKVLA  107 (296)
Q Consensus        30 ~~~~~~~~~evlvkv~~~~i~~~D~~~~~g~~~~~~~~p~~~G~--e~~G~V~~v~~~~~~~~~~g~~v~~~~~Gd~V~~  107 (296)
                      ++++     |||||+.++++|+.|.....+.... ...|.++|+  |++|+|..+          |+++++|++||+|++
T Consensus        41 ~~~g-----evlVkv~a~~inp~~~~~~~~~~~~-~~~p~~~G~~~~~~G~v~~v----------g~~v~~~~~Gd~V~~  104 (348)
T PLN03154         41 KGSG-----AFLVKNLYLSCDPYMRGRMRDFHDS-YLPPFVPGQRIEGFGVSKVV----------DSDDPNFKPGDLISG  104 (348)
T ss_pred             CCCC-----eEEEEEEEEccCHHHHHhhhccCCC-CCCCcCCCCeeEeeEEEEEE----------ecCCCCCCCCCEEEe
Confidence            4677     9999999999999987654432221 235889997  889999999          999999999999987


Q ss_pred             ecCCCCCcccceEeeeCCc--eEE--CCCCCCHH-HHhhhccHHHHHHHHHHHHcCCCCCcEEEEEcCCCcHHHHHHHHH
Q psy1959         108 LNKELLHGFSDQCVVHTND--VFK--IPEKMTFE-HAASLADSYSTAQIVFSRHAKLKEKQTVLVTAAGGGLGLAAVDMA  182 (296)
Q Consensus       108 ~~~~~~g~~~~~~~v~~~~--~~~--iP~~~~~~-~aa~l~~~~~ta~~~l~~~~~~~~g~~vlI~Ga~g~vG~aa~~la  182 (296)
                      +     |+|+||.+++...  +.+  +|++++++ ++|++++++.|||+++...+++++|++|+|+|++|++|++++|+|
T Consensus       105 ~-----~~~aey~~v~~~~~~~~~~~~P~~~~~~~~aa~l~~~~~TA~~al~~~~~~~~g~~VlV~GaaG~vG~~aiqlA  179 (348)
T PLN03154        105 I-----TGWEEYSLIRSSDNQLRKIQLQDDIPLSYHLGLLGMAGFTAYAGFYEVCSPKKGDSVFVSAASGAVGQLVGQLA  179 (348)
T ss_pred             c-----CCcEEEEEEeccccceEEccCcCCCCHHHHHHHcccHHHHHHHHHHHhcCCCCCCEEEEecCccHHHHHHHHHH
Confidence            5     6799999999853  544  59999986 688899999999999988889999999999999999999999999


Q ss_pred             HHhCCCEEEEEeCCcchHHHHH-hcCCcEEEEcCCchhHHHHHHHHhCCCcccEEEECCCCccHHHHHHHhhccCceEEe
Q psy1959         183 TKIYKAKVIGVCNSEDKTDLIR-QKGAWAALTFTNEKSLVNKVLEVSGGKYANVVFEAVGGEDKTDLIRQKGAWAALTFT  261 (296)
Q Consensus       183 ~~~~g~~Vi~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~i~~~~~~~g~d~vld~~g~~~~~~~~~~lg~~~g~~~~  261 (296)
                       +..|++|+++++++++.++++ ++|++.++++++..++.+.+++.++ .++|++||++|+..+..+++++ +.+|++..
T Consensus       180 -k~~G~~Vi~~~~~~~k~~~~~~~lGa~~vi~~~~~~~~~~~i~~~~~-~gvD~v~d~vG~~~~~~~~~~l-~~~G~iv~  256 (348)
T PLN03154        180 -KLHGCYVVGSAGSSQKVDLLKNKLGFDEAFNYKEEPDLDAALKRYFP-EGIDIYFDNVGGDMLDAALLNM-KIHGRIAV  256 (348)
T ss_pred             -HHcCCEEEEEcCCHHHHHHHHHhcCCCEEEECCCcccHHHHHHHHCC-CCcEEEEECCCHHHHHHHHHHh-ccCCEEEE
Confidence             678999999999999999997 7999999988642367777777765 5899999999998899999999 77777642


Q ss_pred             e----------------cccceeeeeEEeccc
Q psy1959         262 N----------------EKSLVNKVLEVSGGK  277 (296)
Q Consensus       262 ~----------------~~~~~~k~~~i~g~~  277 (296)
                      -                ...++.|++++.|++
T Consensus       257 ~G~~~~~~~~~~~~~~~~~~~~~k~~~i~g~~  288 (348)
T PLN03154        257 CGMVSLNSLSASQGIHNLYNLISKRIRMQGFL  288 (348)
T ss_pred             ECccccCCCCCCCCcccHHHHhhccceEEEEE
Confidence            1                112556778888765

>TIGR02817 adh_fam_1 zinc-binding alcohol dehydrogenase family protein

Probab=99.98  E-value=2.2e-30  Score=236.46  Aligned_cols=215  Identities=17%  Similarity=0.238  Sum_probs=187.5

Q ss_pred             CCCCCCCCCCCCCCcEEEEeeeeecChhhHHHHcCCCCCCCCCCCcCCCceeEEEEEEccCCCCCCCCCCCCCCCCCCCE
Q psy1959          25 KPTLPLVPGFEFSGTIIEKKMMTRINSSDLLLYNGSGDAKPTLPLVPGFEFSGTVIEVADTKSSSTEEDDEEDVLQVGDK  104 (296)
Q Consensus        25 ~~~p~~~~~~~~~~evlvkv~~~~i~~~D~~~~~g~~~~~~~~p~~~G~e~~G~V~~v~~~~~~~~~~g~~v~~~~~Gd~  104 (296)
                      .|.|.|.++     ||+||+.++++|+.|...+.|.... ..+|.++|+|++|+|+++          |+++..|++||+
T Consensus        22 ~~~p~~~~~-----ev~Ikv~~~~i~~~d~~~~~g~~~~-~~~~~~~g~e~~G~V~~v----------G~~v~~~~~Gd~   85 (336)
T TIGR02817        22 LPKPKPGGR-----DLLVEVKAISVNPVDTKVRARMAPE-AGQPKILGWDAAGVVVAV----------GDEVTLFKPGDE   85 (336)
T ss_pred             cCCCCCCCC-----EEEEEEEEEEcChHHHHHHcCCCCC-CCCCcccceeeEEEEEEe----------CCCCCCCCCCCE
Confidence            677778888     9999999999999999988886543 456889999999999999          999999999999


Q ss_pred             EEEecC-CCCCcccceEeeeCCceEECCCCCCHHHHhhhccHHHHHHHHHHHHcCCCC-----CcEEEEEcCCCcHHHHH
Q psy1959         105 VLALNK-ELLHGFSDQCVVHTNDVFKIPEKMTFEHAASLADSYSTAQIVFSRHAKLKE-----KQTVLVTAAGGGLGLAA  178 (296)
Q Consensus       105 V~~~~~-~~~g~~~~~~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~-----g~~vlI~Ga~g~vG~aa  178 (296)
                      |+++.. ...|+|++|++++.+.++++|+++++++++.++.++.+||+++....++++     |++|+|+|++|++|+++
T Consensus        86 V~~~~~~~~~g~~~~~~~v~~~~~~~ip~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~~g~~vlV~ga~g~vg~~~  165 (336)
T TIGR02817        86 VWYAGDIDRPGSNAEFHLVDERIVGHKPKSLSFAEAAALPLTSITAWELLFDRLGINDPVAGDKRALLIIGGAGGVGSIL  165 (336)
T ss_pred             EEEcCCCCCCCcccceEEEcHHHcccCCCCCCHHHHhhhhHHHHHHHHHHHHhcCCCCCCCCCCCEEEEEcCCcHHHHHH
Confidence            998741 124899999999999999999999999999999999999999988888887     99999999999999999


Q ss_pred             HHHHHHhC-CCEEEEEeCCcchHHHHHhcCCcEEEEcCCchhHHHHHHHHhCCCcccEEEECCCC-ccHHHHHHHhhccC
Q psy1959         179 VDMATKIY-KAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNKVLEVSGGKYANVVFEAVGG-EDKTDLIRQKGAWA  256 (296)
Q Consensus       179 ~~la~~~~-g~~Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~g~d~vld~~g~-~~~~~~~~~lg~~~  256 (296)
                      +|+| +.+ |++|+++++++++.+.++++|++.++++..  ++.+.+.+. .++++|+++|++++ ..+..+++++ +.+
T Consensus       166 ~~~a-k~~~G~~vi~~~~~~~~~~~l~~~g~~~~~~~~~--~~~~~i~~~-~~~~vd~vl~~~~~~~~~~~~~~~l-~~~  240 (336)
T TIGR02817       166 IQLA-RQLTGLTVIATASRPESQEWVLELGAHHVIDHSK--PLKAQLEKL-GLEAVSYVFSLTHTDQHFKEIVELL-APQ  240 (336)
T ss_pred             HHHH-HHhCCCEEEEEcCcHHHHHHHHHcCCCEEEECCC--CHHHHHHHh-cCCCCCEEEEcCCcHHHHHHHHHHh-ccC
Confidence            9999 556 999999999999999999999988887543  566666664 45689999999865 7889999999 777


Q ss_pred             ceEE
Q psy1959         257 ALTF  260 (296)
Q Consensus       257 g~~~  260 (296)
                      |++.
T Consensus       241 G~~v  244 (336)
T TIGR02817       241 GRFA  244 (336)
T ss_pred             CEEE
Confidence            7764

Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). While some current members of this family carry designations as putative alginate lyase, it seems no sequence with a direct characterization as such is detected by this model.

>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD)

Probab=99.98  E-value=2.3e-30  Score=236.70  Aligned_cols=241  Identities=20%  Similarity=0.233  Sum_probs=201.7

Q ss_pred             cceEEecCCC-CC----CCCCCCCCCCCCCCcEEEEeeeeecChhhHHHHcCCCCCCCCCCCcCCCceeEEEEEEccCCC
Q psy1959          13 SDLLLYNGSG-DA----KPTLPLVPGFEFSGTIIEKKMMTRINSSDLLLYNGSGDAKPTLPLVPGFEFSGTVIEVADTKS   87 (296)
Q Consensus        13 ~~~~~~~~~~-~~----~~~p~~~~~~~~~~evlvkv~~~~i~~~D~~~~~g~~~~~~~~p~~~G~e~~G~V~~v~~~~~   87 (296)
                      |+++++++++ +.    .|.|.+.++     ||+||+.++++|++|+..+.|..+. ..+|.++|||++|+|+++     
T Consensus         1 m~a~~~~~~~~~~~~~~~~~p~~~~~-----~v~v~v~~~~i~~~d~~~~~g~~~~-~~~p~~~g~e~~G~v~~v-----   69 (333)
T cd08296           1 YKAVQVTEPGGPLELVERDVPLPGPG-----EVLIKVEACGVCHSDAFVKEGAMPG-LSYPRVPGHEVVGRIDAV-----   69 (333)
T ss_pred             CeEEEEccCCCCceEEeccCCCCCCC-----EEEEEEEEEecchHHHHHHhCCCCC-CCCCcccCcceeEEEEEE-----
Confidence            6888888874 33    566777788     9999999999999999999886543 355889999999999999     


Q ss_pred             CCCCCCCCCCCCCCCCEEEEec--------------------------CCCCCcccceEeeeCCceEECCCCCCHHHHhh
Q psy1959          88 SSTEEDDEEDVLQVGDKVLALN--------------------------KELLHGFSDQCVVHTNDVFKIPEKMTFEHAAS  141 (296)
Q Consensus        88 ~~~~~g~~v~~~~~Gd~V~~~~--------------------------~~~~g~~~~~~~v~~~~~~~iP~~~~~~~aa~  141 (296)
                           |+++..+++||+|++..                          ....|+|++|+.++...++++|+++++++++.
T Consensus        70 -----G~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~g~~~~c~~~~~~~~~~~g~~a~~~~v~~~~~~~lp~~~~~~~aa~  144 (333)
T cd08296          70 -----GEGVSRWKVGDRVGVGWHGGHCGTCDACRRGDFVHCENGKVTGVTRDGGYAEYMLAPAEALARIPDDLDAAEAAP  144 (333)
T ss_pred             -----CCCCccCCCCCEEEeccccCCCCCChhhhCcCcccCCCCCccCcccCCcceeEEEEchhheEeCCCCCCHHHhhh
Confidence                 99999999999998621                          11148999999999999999999999999999


Q ss_pred             hccHHHHHHHHHHHHcCCCCCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCcEEEEcCCchhHH
Q psy1959         142 LADSYSTAQIVFSRHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLV  221 (296)
Q Consensus       142 l~~~~~ta~~~l~~~~~~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  221 (296)
                      ++.++.+||+++.. .++.++++|+|+| +|++|++++++| +.+|++|+++++++++.+.++++|++.++++.+ .++.
T Consensus       145 l~~~~~ta~~~~~~-~~~~~~~~vlV~g-~g~iG~~~~~~a-~~~G~~vi~~~~~~~~~~~~~~~g~~~~i~~~~-~~~~  220 (333)
T cd08296         145 LLCAGVTTFNALRN-SGAKPGDLVAVQG-IGGLGHLAVQYA-AKMGFRTVAISRGSDKADLARKLGAHHYIDTSK-EDVA  220 (333)
T ss_pred             hhhhhHHHHHHHHh-cCCCCCCEEEEEC-CcHHHHHHHHHH-HHCCCeEEEEeCChHHHHHHHHcCCcEEecCCC-ccHH
Confidence            99999999999954 4899999999999 699999999999 678999999999999999999999988888766 5566


Q ss_pred             HHHHHHhCCCcccEEEECCCC-ccHHHHHHHhhccCceEEe----------ecccceeeeeEEeccc
Q psy1959         222 NKVLEVSGGKYANVVFEAVGG-EDKTDLIRQKGAWAALTFT----------NEKSLVNKVLEVSGGK  277 (296)
Q Consensus       222 ~~i~~~~~~~g~d~vld~~g~-~~~~~~~~~lg~~~g~~~~----------~~~~~~~k~~~i~g~~  277 (296)
                      +.+.+.   .++|+++|+.|. ..+..+++++ +.+|++..          +...++.+++++.+..
T Consensus       221 ~~~~~~---~~~d~vi~~~g~~~~~~~~~~~l-~~~G~~v~~g~~~~~~~~~~~~~~~~~~~i~~~~  283 (333)
T cd08296         221 EALQEL---GGAKLILATAPNAKAISALVGGL-APRGKLLILGAAGEPVAVSPLQLIMGRKSIHGWP  283 (333)
T ss_pred             HHHHhc---CCCCEEEECCCchHHHHHHHHHc-ccCCEEEEEecCCCCCCcCHHHHhhcccEEEEeC
Confidence            666654   379999999975 7889999999 77776642          1123447888888765

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal

>cd08274 MDR9 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.98  E-value=4.1e-30  Score=235.97  Aligned_cols=243  Identities=28%  Similarity=0.372  Sum_probs=194.5

Q ss_pred             cceEEecCCCCC--------CCCCCCCCCCCCCCcEEEEeeeeecChhhHHHHcCCCCC-------------------CC
Q psy1959          13 SDLLLYNGSGDA--------KPTLPLVPGFEFSGTIIEKKMMTRINSSDLLLYNGSGDA-------------------KP   65 (296)
Q Consensus        13 ~~~~~~~~~~~~--------~~~p~~~~~~~~~~evlvkv~~~~i~~~D~~~~~g~~~~-------------------~~   65 (296)
                      |+++++.+++..        .+.|.|.++     +|+|||.++++|++|+....|.++.                   ..
T Consensus         1 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~-----~v~i~v~~~~~~~~d~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~   75 (350)
T cd08274           1 MRAVLLTGHGGLDKLVYRDDVPVPTPAPG-----EVLIRVGACGVNNTDINTREGWYSTEVDGATDSTGAGEAGWWGGTL   75 (350)
T ss_pred             CeEEEEeccCCccceeecccCCCCCCCCC-----eEEEEEEeccCCHHHHHHhcCCCCCccccccccccccccccccCCC
Confidence            455666554321        245556777     9999999999999999988876531                   34


Q ss_pred             CCCCcCCCceeEEEEEEccCCCCCCCCCCCCCCCCCCCEEEEec-----------------CCCCCcccceEeeeCCceE
Q psy1959          66 TLPLVPGFEFSGTVIEVADTKSSSTEEDDEEDVLQVGDKVLALN-----------------KELLHGFSDQCVVHTNDVF  128 (296)
Q Consensus        66 ~~p~~~G~e~~G~V~~v~~~~~~~~~~g~~v~~~~~Gd~V~~~~-----------------~~~~g~~~~~~~v~~~~~~  128 (296)
                      .+|.++|||++|+|+++          |+++.+|++||+|++..                 ....|+|++|+.++...++
T Consensus        76 ~~p~~~G~e~~G~V~~v----------G~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~  145 (350)
T cd08274          76 SFPRIQGADIVGRVVAV----------GEGVDTARIGERVLVDPSIRDPPEDDPADIDYIGSERDGGFAEYTVVPAENAY  145 (350)
T ss_pred             CCCcccCCcceEEEEEe----------CCCCCCCCCCCEEEEecCcCCCCccccccccccCCCCCccceEEEEecHHHce
Confidence            56889999999999999          99999999999999842                 1124899999999999999


Q ss_pred             ECCCCCCHHHHhhhccHHHHHHHHHHHHcCCCCCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCC
Q psy1959         129 KIPEKMTFEHAASLADSYSTAQIVFSRHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGA  208 (296)
Q Consensus       129 ~iP~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~  208 (296)
                      ++|++++..++++++.++.+||+++ ...++++|++++|+|++|++|++++++| +.+|+++++++.++ +.+.++++|+
T Consensus       146 ~ip~~~~~~~~a~l~~~~~ta~~~~-~~~~~~~g~~vlI~g~~g~ig~~~~~~a-~~~g~~vi~~~~~~-~~~~~~~~g~  222 (350)
T cd08274         146 PVNSPLSDVELATFPCSYSTAENML-ERAGVGAGETVLVTGASGGVGSALVQLA-KRRGAIVIAVAGAA-KEEAVRALGA  222 (350)
T ss_pred             eCCCCCCHHHHHhcccHHHHHHHHH-hhcCCCCCCEEEEEcCCcHHHHHHHHHH-HhcCCEEEEEeCch-hhHHHHhcCC
Confidence            9999999999999999999999998 7789999999999999999999999999 67899999888665 8888899998


Q ss_pred             cEEEEcCCchhHHHHHHHHhCCCcccEEEECCCCccHHHHHHHhhccCceEEee-----------cccceeeeeEEeccc
Q psy1959         209 WAALTFTNEKSLVNKVLEVSGGKYANVVFEAVGGEDKTDLIRQKGAWAALTFTN-----------EKSLVNKVLEVSGGK  277 (296)
Q Consensus       209 ~~~~~~~~~~~~~~~i~~~~~~~g~d~vld~~g~~~~~~~~~~lg~~~g~~~~~-----------~~~~~~k~~~i~g~~  277 (296)
                      +.+.+... ..+.+  ...+.++++|++||++|++.+..+++++ +.+|.+..-           ...++.+++++.++.
T Consensus       223 ~~~~~~~~-~~~~~--~~~~~~~~~d~vi~~~g~~~~~~~~~~l-~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~  298 (350)
T cd08274         223 DTVILRDA-PLLAD--AKALGGEPVDVVADVVGGPLFPDLLRLL-RPGGRYVTAGAIAGPVVELDLRTLYLKDLTLFGST  298 (350)
T ss_pred             eEEEeCCC-ccHHH--HHhhCCCCCcEEEecCCHHHHHHHHHHh-ccCCEEEEecccCCccccCCHHHhhhcceEEEEee
Confidence            65544433 33333  4556677899999999998899999999 777766421           112356667777643

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases

Probab=99.98  E-value=3.7e-30  Score=236.88  Aligned_cols=227  Identities=25%  Similarity=0.288  Sum_probs=196.0

Q ss_pred             cceEEecCCCCC----CCCCCCCCCCCCCCcEEEEeeeeecChhhHHHHcCCCCCCCCCCCcCCCceeEEEEEEccCCCC
Q psy1959          13 SDLLLYNGSGDA----KPTLPLVPGFEFSGTIIEKKMMTRINSSDLLLYNGSGDAKPTLPLVPGFEFSGTVIEVADTKSS   88 (296)
Q Consensus        13 ~~~~~~~~~~~~----~~~p~~~~~~~~~~evlvkv~~~~i~~~D~~~~~g~~~~~~~~p~~~G~e~~G~V~~v~~~~~~   88 (296)
                      |+++++.++++.    .|.|.+.++     ||+|||.++++|++|++...|.+.. ..+|.++|||++|+|+++      
T Consensus         1 mka~~~~~~~~~~l~~~~~p~~~~~-----evlIkv~a~~i~~~d~~~~~g~~~~-~~~~~~~G~e~~G~V~~v------   68 (351)
T cd08285           1 MKAFAMLGIGKVGWIEKPIPVCGPN-----DAIVRPTAVAPCTSDVHTVWGGAPG-ERHGMILGHEAVGVVEEV------   68 (351)
T ss_pred             CceEEEccCCccEEEECCCCCCCCC-----eEEEEEEEEEechhhHHHhcCCCCC-CCCCcccCcceEEEEEEe------
Confidence            678888887765    456667788     9999999999999999988876543 356889999999999999      


Q ss_pred             CCCCCCCCCCCCCCCEEEEecC----------------------------CCCCcccceEeeeCC--ceEECCCCCCHHH
Q psy1959          89 STEEDDEEDVLQVGDKVLALNK----------------------------ELLHGFSDQCVVHTN--DVFKIPEKMTFEH  138 (296)
Q Consensus        89 ~~~~g~~v~~~~~Gd~V~~~~~----------------------------~~~g~~~~~~~v~~~--~~~~iP~~~~~~~  138 (296)
                          |+++.++++||+|++...                            ...|+|+||+.++..  .++++|++++.++
T Consensus        69 ----G~~v~~~~~Gd~V~~~~~~~~~~c~~c~~g~~~~~~~~~~~~~~~~~~~g~~~~y~~v~~~~~~~~~lP~~~~~~~  144 (351)
T cd08285          69 ----GSEVKDFKPGDRVIVPAITPDWRSVAAQRGYPSQSGGMLGGWKFSNFKDGVFAEYFHVNDADANLAPLPDGLTDEQ  144 (351)
T ss_pred             ----cCCcCccCCCCEEEEcCcCCCCCCHHHHCcCcccCcCCCCCccccCCCCcceeEEEEcchhhCceEECCCCCCHHH
Confidence                999999999999997421                            025899999999974  8999999999999


Q ss_pred             HhhhccHHHHHHHHHHHHcCCCCCcEEEEEcCCCcHHHHHHHHHHHhCCC-EEEEEeCCcchHHHHHhcCCcEEEEcCCc
Q psy1959         139 AASLADSYSTAQIVFSRHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKA-KVIGVCNSEDKTDLIRQKGAWAALTFTNE  217 (296)
Q Consensus       139 aa~l~~~~~ta~~~l~~~~~~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~-~Vi~~~~~~~~~~~~~~~g~~~~~~~~~~  217 (296)
                      ++.++.++.+||+++ ...++++|++|+|+|+ |++|++++|+| +.+|+ .|+++++++++.+.++++|++.++++++ 
T Consensus       145 aa~~~~~~~ta~~~~-~~~~~~~g~~vlI~g~-g~iG~~~~~la-k~~G~~~v~~~~~~~~~~~~~~~~g~~~~v~~~~-  220 (351)
T cd08285         145 AVMLPDMMSTGFHGA-ELANIKLGDTVAVFGI-GPVGLMAVAGA-RLRGAGRIIAVGSRPNRVELAKEYGATDIVDYKN-  220 (351)
T ss_pred             hhhhccchhhHHHHH-HccCCCCCCEEEEECC-CHHHHHHHHHH-HHcCCCeEEEEeCCHHHHHHHHHcCCceEecCCC-
Confidence            999999999999997 6789999999999975 99999999999 67899 5888888999999999999988888876 


Q ss_pred             hhHHHHHHHHhCCCcccEEEECCCC-ccHHHHHHHhhccCceEE
Q psy1959         218 KSLVNKVLEVSGGKYANVVFEAVGG-EDKTDLIRQKGAWAALTF  260 (296)
Q Consensus       218 ~~~~~~i~~~~~~~g~d~vld~~g~-~~~~~~~~~lg~~~g~~~  260 (296)
                      .++.+.+.+.+.++++|+++|++|+ +.+..+++++ +.+|++.
T Consensus       221 ~~~~~~i~~~~~~~~~d~vld~~g~~~~~~~~~~~l-~~~G~~v  263 (351)
T cd08285         221 GDVVEQILKLTGGKGVDAVIIAGGGQDTFEQALKVL-KPGGTIS  263 (351)
T ss_pred             CCHHHHHHHHhCCCCCcEEEECCCCHHHHHHHHHHh-hcCCEEE
Confidence            6777778887777789999999998 6889999999 7777663

This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.

>cd05278 FDH_like Formaldehyde dehydrogenases

Probab=99.97  E-value=4.5e-30  Score=235.43  Aligned_cols=227  Identities=29%  Similarity=0.379  Sum_probs=196.4

Q ss_pred             cceEEecCCCCC----CCCCCC-CCCCCCCCcEEEEeeeeecChhhHHHHcCCCCCCCCCCCcCCCceeEEEEEEccCCC
Q psy1959          13 SDLLLYNGSGDA----KPTLPL-VPGFEFSGTIIEKKMMTRINSSDLLLYNGSGDAKPTLPLVPGFEFSGTVIEVADTKS   87 (296)
Q Consensus        13 ~~~~~~~~~~~~----~~~p~~-~~~~~~~~evlvkv~~~~i~~~D~~~~~g~~~~~~~~p~~~G~e~~G~V~~v~~~~~   87 (296)
                      ||++++.++++.    .|.|.| .++     +|+||+.++++|+.|...+.|.++. .++|.++|+|++|+|+++     
T Consensus         1 ~ka~~~~~~~~~~~~~~~~p~~~~~~-----~v~i~v~~~~i~~~d~~~~~g~~~~-~~~~~~~g~e~~G~V~~v-----   69 (347)
T cd05278           1 MKALVYLGPGKIGLEEVPDPKIQGPH-----DAIVRVTATSICGSDLHIYRGGVPG-AKHGMILGHEFVGEVVEV-----   69 (347)
T ss_pred             CceEEEecCCceEEEEcCCCCCCCCC-----eEEEEEEEEEechhhHHHHcCCCCC-CCCCceeccceEEEEEEE-----
Confidence            567777776666    566777 778     9999999999999999999887754 456889999999999999     


Q ss_pred             CCCCCCCCCCCCCCCCEEEEecC----------------------------CCCCcccceEeeeCC--ceEECCCCCCHH
Q psy1959          88 SSTEEDDEEDVLQVGDKVLALNK----------------------------ELLHGFSDQCVVHTN--DVFKIPEKMTFE  137 (296)
Q Consensus        88 ~~~~~g~~v~~~~~Gd~V~~~~~----------------------------~~~g~~~~~~~v~~~--~~~~iP~~~~~~  137 (296)
                           |+++.++++||+|++...                            ...|+|++|++++.+  .++++|++++.+
T Consensus        70 -----G~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~~~lP~~~~~~  144 (347)
T cd05278          70 -----GSDVKRLKPGDRVSVPCITFCGRCRFCRRGYHAHCENGLWGWKLGNRIDGGQAEYVRVPYADMNLAKIPDGLPDE  144 (347)
T ss_pred             -----CCCccccCCCCEEEecCCCCCCCChhHhCcCcccCcCCCcccccccCCCCeeeEEEEecchhCeEEECCCCCCHH
Confidence                 999999999999997210                            114899999999997  899999999999


Q ss_pred             HHhhhccHHHHHHHHHHHHcCCCCCcEEEEEcCCCcHHHHHHHHHHHhCCC-EEEEEeCCcchHHHHHhcCCcEEEEcCC
Q psy1959         138 HAASLADSYSTAQIVFSRHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKA-KVIGVCNSEDKTDLIRQKGAWAALTFTN  216 (296)
Q Consensus       138 ~aa~l~~~~~ta~~~l~~~~~~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~-~Vi~~~~~~~~~~~~~~~g~~~~~~~~~  216 (296)
                      +++.++.++.+||+++ ...+++++++|+|.|+ |++|++++|+| +..|. +++++++++++.+.++++|++.++++++
T Consensus       145 ~aa~l~~~~~ta~~~~-~~~~~~~~~~VlI~g~-g~vg~~~iqla-k~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~  221 (347)
T cd05278         145 DALMLSDILPTGFHGA-ELAGIKPGSTVAVIGA-GPVGLCAVAGA-RLLGAARIIAVDSNPERLDLAKEAGATDIINPKN  221 (347)
T ss_pred             HHhhhcchhhheeehh-hhcCCCCCCEEEEECC-CHHHHHHHHHH-HHcCCCEEEEEeCCHHHHHHHHHhCCcEEEcCCc
Confidence            9999999999999998 7789999999999875 99999999999 56896 8988888888999999999888888876


Q ss_pred             chhHHHHHHHHhCCCcccEEEECCCC-ccHHHHHHHhhccCceEE
Q psy1959         217 EKSLVNKVLEVSGGKYANVVFEAVGG-EDKTDLIRQKGAWAALTF  260 (296)
Q Consensus       217 ~~~~~~~i~~~~~~~g~d~vld~~g~-~~~~~~~~~lg~~~g~~~  260 (296)
                       .++.+.++..++++++|++||++|+ +.+..+++++ +.+|++.
T Consensus       222 -~~~~~~i~~~~~~~~~d~vld~~g~~~~~~~~~~~l-~~~G~~v  264 (347)
T cd05278         222 -GDIVEQILELTGGRGVDCVIEAVGFEETFEQAVKVV-RPGGTIA  264 (347)
T ss_pred             -chHHHHHHHHcCCCCCcEEEEccCCHHHHHHHHHHh-hcCCEEE
Confidence             6677888888777789999999998 6899999999 7777764

Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall

>cd08290 ETR 2-enoyl thioester reductase (ETR)

Probab=99.97  E-value=3.7e-30  Score=235.55  Aligned_cols=228  Identities=26%  Similarity=0.356  Sum_probs=195.3

Q ss_pred             cceEEecCCCCC--------CCCCCCCC-CCCCCCcEEEEeeeeecChhhHHHHcCCCCCCCC----CCCcCCCceeEEE
Q psy1959          13 SDLLLYNGSGDA--------KPTLPLVP-GFEFSGTIIEKKMMTRINSSDLLLYNGSGDAKPT----LPLVPGFEFSGTV   79 (296)
Q Consensus        13 ~~~~~~~~~~~~--------~~~p~~~~-~~~~~~evlvkv~~~~i~~~D~~~~~g~~~~~~~----~p~~~G~e~~G~V   79 (296)
                      |+++++.+++..        .|.|.|.+ +     +|+||+.++++|+.|...+.|..+....    +|.++|||++|+|
T Consensus         1 ~~a~~~~~~~~~~~~~~~~~~~~p~~~~~~-----~v~v~v~~~gi~~~d~~~~~g~~~~~~~~~~~~~~~~g~e~~G~V   75 (341)
T cd08290           1 AKALVYTEHGEPKEVLQLESYEIPPPGPPN-----EVLVKMLAAPINPADINQIQGVYPIKPPTTPEPPAVGGNEGVGEV   75 (341)
T ss_pred             CceEEEccCCCchhheEEeecCCCCCCCCC-----EEEEEEEecCCCHHHHHHhcCcCCCCCcccCCCCCCCCcceEEEE
Confidence            677777776652        45666666 7     9999999999999999999887643323    6789999999999


Q ss_pred             EEEccCCCCCCCCCCCCCCCCCCCEEEEecCCCCCcccceEeeeCCceEECCCCCCHHHHhhhccHHHHHHHHHHHHcCC
Q psy1959          80 IEVADTKSSSTEEDDEEDVLQVGDKVLALNKELLHGFSDQCVVHTNDVFKIPEKMTFEHAASLADSYSTAQIVFSRHAKL  159 (296)
Q Consensus        80 ~~v~~~~~~~~~~g~~v~~~~~Gd~V~~~~~~~~g~~~~~~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~l~~~~~~  159 (296)
                      +++          |+++..+++||+|++... ..|+|++|+.++.+.++++|+++++++++.++.++.+||+++.....+
T Consensus        76 ~~v----------G~~v~~~~~Gd~V~~~~~-~~g~~~~~~~v~~~~~~~lp~~~~~~~aa~~~~~~~ta~~~l~~~~~~  144 (341)
T cd08290          76 VKV----------GSGVKSLKPGDWVIPLRP-GLGTWRTHAVVPADDLIKVPNDVDPEQAATLSVNPCTAYRLLEDFVKL  144 (341)
T ss_pred             EEe----------CCCCCCCCCCCEEEecCC-CCccchheEeccHHHeEeCCCCCCHHHHHHhhccHHHHHHHHHhhccc
Confidence            999          999989999999998742 148999999999999999999999999999999999999999877889


Q ss_pred             CCCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCc----chHHHHHhcCCcEEEEcCCch---hHHHHHHHHhCCCc
Q psy1959         160 KEKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSE----DKTDLIRQKGAWAALTFTNEK---SLVNKVLEVSGGKY  232 (296)
Q Consensus       160 ~~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~----~~~~~~~~~g~~~~~~~~~~~---~~~~~i~~~~~~~g  232 (296)
                      ++|++|+|+|++|++|++++++| +..|++++++++++    ++.++++++|++.+++++. .   ++.+.+.....+ +
T Consensus       145 ~~g~~vlI~g~~g~vg~~~~~~a-~~~g~~v~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~~~i~~~~~~-~  221 (341)
T cd08290         145 QPGDWVIQNGANSAVGQAVIQLA-KLLGIKTINVVRDRPDLEELKERLKALGADHVLTEEE-LRSLLATELLKSAPGG-R  221 (341)
T ss_pred             CCCCEEEEccchhHHHHHHHHHH-HHcCCeEEEEEcCCCcchhHHHHHHhcCCCEEEeCcc-cccccHHHHHHHHcCC-C
Confidence            99999999999999999999999 67899999988776    6688888899998887765 3   667777777666 8


Q ss_pred             ccEEEECCCCccHHHHHHHhhccCceEE
Q psy1959         233 ANVVFEAVGGEDKTDLIRQKGAWAALTF  260 (296)
Q Consensus       233 ~d~vld~~g~~~~~~~~~~lg~~~g~~~  260 (296)
                      +|++|||+|+.....+++++ +.+|.+.
T Consensus       222 ~d~vld~~g~~~~~~~~~~l-~~~G~~v  248 (341)
T cd08290         222 PKLALNCVGGKSATELARLL-SPGGTMV  248 (341)
T ss_pred             ceEEEECcCcHhHHHHHHHh-CCCCEEE
Confidence            99999999998888899999 7777664

2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann f

>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity

Probab=99.97  E-value=6.4e-30  Score=232.59  Aligned_cols=205  Identities=21%  Similarity=0.260  Sum_probs=176.9

Q ss_pred             CCCCCCCCCCCCCCcEEEEeeeeecChhhHHHHcCCCCCCCCCCCcCCCceeEEEEEEccCCCCCCCCCCCCCCCCCCCE
Q psy1959          25 KPTLPLVPGFEFSGTIIEKKMMTRINSSDLLLYNGSGDAKPTLPLVPGFEFSGTVIEVADTKSSSTEEDDEEDVLQVGDK  104 (296)
Q Consensus        25 ~~~p~~~~~~~~~~evlvkv~~~~i~~~D~~~~~g~~~~~~~~p~~~G~e~~G~V~~v~~~~~~~~~~g~~v~~~~~Gd~  104 (296)
                      .|.|.|+++     ||+|||.+++||+.|.....+    ..++|.++|+|++|+|++.          +   ..+++||+
T Consensus        26 ~~~p~~~~~-----evlVkv~a~~in~~~~~~~~~----~~~~p~v~G~e~~G~V~~~----------~---~~~~~Gd~   83 (329)
T cd08294          26 EELPPLKDG-----EVLCEALFLSVDPYMRPYSKR----LNEGDTMIGTQVAKVIESK----------N---SKFPVGTI   83 (329)
T ss_pred             cCCCCCCCC-----cEEEEEEEEecCHHHhccccc----CCCCCcEecceEEEEEecC----------C---CCCCCCCE
Confidence            677888999     999999999999887542211    1246889999999999865          3   46999999


Q ss_pred             EEEecCCCCCcccceEeeeCC---ceEECCCCCC-----HHHHhhhccHHHHHHHHHHHHcCCCCCcEEEEEcCCCcHHH
Q psy1959         105 VLALNKELLHGFSDQCVVHTN---DVFKIPEKMT-----FEHAASLADSYSTAQIVFSRHAKLKEKQTVLVTAAGGGLGL  176 (296)
Q Consensus       105 V~~~~~~~~g~~~~~~~v~~~---~~~~iP~~~~-----~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vlI~Ga~g~vG~  176 (296)
                      |+++     ++|++|++++.+   .++++|++++     ...+++++.+++|||+++.+.+++++|++|+|+|++|++|+
T Consensus        84 V~~~-----~~~~~~~~~~~~~~~~~~~iP~~~~~~~~~~~~~a~~~~~~~ta~~al~~~~~~~~g~~vlI~ga~g~vG~  158 (329)
T cd08294          84 VVAS-----FGWRTHTVSDGKDQPDLYKLPADLPDDLPPSLALGVLGMPGLTAYFGLLEICKPKAGETVVVNGAAGAVGS  158 (329)
T ss_pred             EEee-----CCeeeEEEECCccccceEECCccccccCChHHHHHhcccHHHHHHHHHHHhcCCCCCCEEEEecCccHHHH
Confidence            9875     469999999999   9999999998     23334688999999999988899999999999999999999


Q ss_pred             HHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCcEEEEcCCchhHHHHHHHHhCCCcccEEEECCCCccHHHHHHHhhccC
Q psy1959         177 AAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNKVLEVSGGKYANVVFEAVGGEDKTDLIRQKGAWA  256 (296)
Q Consensus       177 aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~g~d~vld~~g~~~~~~~~~~lg~~~  256 (296)
                      +++|+| +..|++|+++++++++.++++++|++.++++++ .++.+.+.+.++ .++|++||++|++.+..+++++ +.+
T Consensus       159 ~aiqlA-~~~G~~vi~~~~s~~~~~~l~~~Ga~~vi~~~~-~~~~~~v~~~~~-~gvd~vld~~g~~~~~~~~~~l-~~~  234 (329)
T cd08294         159 LVGQIA-KIKGCKVIGCAGSDDKVAWLKELGFDAVFNYKT-VSLEEALKEAAP-DGIDCYFDNVGGEFSSTVLSHM-NDF  234 (329)
T ss_pred             HHHHHH-HHcCCEEEEEeCCHHHHHHHHHcCCCEEEeCCC-ccHHHHHHHHCC-CCcEEEEECCCHHHHHHHHHhh-ccC
Confidence            999999 678999999999999999999999999998876 677788877765 6899999999998899999999 777


Q ss_pred             ceEE
Q psy1959         257 ALTF  260 (296)
Q Consensus       257 g~~~  260 (296)
                      |++.
T Consensus       235 G~iv  238 (329)
T cd08294         235 GRVA  238 (329)
T ss_pred             CEEE
Confidence            7764

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac

>cd08299 alcohol_DH_class_I_II_IV class I, II, IV alcohol dehydrogenases

Probab=99.97  E-value=5.3e-30  Score=238.00  Aligned_cols=227  Identities=22%  Similarity=0.224  Sum_probs=191.3

Q ss_pred             cceEEecCCCCC-----CCCCCCCCCCCCCCcEEEEeeeeecChhhHHHHcCCCCCCCCCCCcCCCceeEEEEEEccCCC
Q psy1959          13 SDLLLYNGSGDA-----KPTLPLVPGFEFSGTIIEKKMMTRINSSDLLLYNGSGDAKPTLPLVPGFEFSGTVIEVADTKS   87 (296)
Q Consensus        13 ~~~~~~~~~~~~-----~~~p~~~~~~~~~~evlvkv~~~~i~~~D~~~~~g~~~~~~~~p~~~G~e~~G~V~~v~~~~~   87 (296)
                      ++++++..+...     .|.|.|.++     ||+||+.++++|++|++.+.|.+.  ..+|.++|||++|+|+++     
T Consensus         8 ~~a~~~~~~~~~~~l~~~p~p~~~~~-----~vlvkv~~~gi~~~D~~~~~g~~~--~~~p~v~G~e~~G~V~~v-----   75 (373)
T cd08299           8 CKAAVLWEPKKPFSIEEIEVAPPKAH-----EVRIKIVATGICRSDDHVVSGKLV--TPFPVILGHEAAGIVESV-----   75 (373)
T ss_pred             eEEEEEecCCCCcEEEEeecCCCCCC-----EEEEEEEEEEcCcccHHHhcCCCC--CCCCccccccceEEEEEe-----
Confidence            777777765543     677778888     999999999999999999988763  356889999999999999     


Q ss_pred             CCCCCCCCCCCCCCCCEEEEecC--------------------------------------------C--CCCcccceEe
Q psy1959          88 SSTEEDDEEDVLQVGDKVLALNK--------------------------------------------E--LLHGFSDQCV  121 (296)
Q Consensus        88 ~~~~~g~~v~~~~~Gd~V~~~~~--------------------------------------------~--~~g~~~~~~~  121 (296)
                           |+++..+++||+|+.+..                                            +  ..|+|+||++
T Consensus        76 -----G~~v~~~~~Gd~V~~~~~~~c~~c~~c~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~e~~~  150 (373)
T cd08299          76 -----GEGVTTVKPGDKVIPLFVPQCGKCRACLNPESNLCLKNDLGKPQGLMQDGTSRFTCKGKPIHHFLGTSTFSEYTV  150 (373)
T ss_pred             -----CCCCccCCCCCEEEECCCCCCCCChhhhCCCcccCcCcccccccccccCCccccccCCcccccccCCCcccceEE
Confidence                 999999999999987520                                            0  1388999999


Q ss_pred             eeCCceEECCCCCCHHHHhhhccHHHHHHHHHHHHcCCCCCcEEEEEcCCCcHHHHHHHHHHHhCCC-EEEEEeCCcchH
Q psy1959         122 VHTNDVFKIPEKMTFEHAASLADSYSTAQIVFSRHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKA-KVIGVCNSEDKT  200 (296)
Q Consensus       122 v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~-~Vi~~~~~~~~~  200 (296)
                      ++.+.++++|+++++++++.+.+++.+||+++.+.+++++|++|+|+|+ |++|++++++| +..|+ +|++++++++++
T Consensus       151 v~~~~~~~lP~~l~~~~aa~~~~~~~ta~~~~~~~~~~~~g~~VlV~G~-g~vG~~~~~~a-~~~G~~~Vi~~~~~~~~~  228 (373)
T cd08299         151 VDEIAVAKIDAAAPLEKVCLIGCGFSTGYGAAVNTAKVTPGSTCAVFGL-GGVGLSAIMGC-KAAGASRIIAVDINKDKF  228 (373)
T ss_pred             ecccceeeCCCCCChHHhheeccchHHHHHHHHhccCCCCCCEEEEECC-CHHHHHHHHHH-HHcCCCeEEEEcCCHHHH
Confidence            9999999999999999999999999999999878899999999999975 99999999999 66899 899999999999


Q ss_pred             HHHHhcCCcEEEEcCCc-hhHHHHHHHHhCCCcccEEEECCCC-ccHHHHHHHhhccCceE
Q psy1959         201 DLIRQKGAWAALTFTNE-KSLVNKVLEVSGGKYANVVFEAVGG-EDKTDLIRQKGAWAALT  259 (296)
Q Consensus       201 ~~~~~~g~~~~~~~~~~-~~~~~~i~~~~~~~g~d~vld~~g~-~~~~~~~~~lg~~~g~~  259 (296)
                      +.++++|++.+++..+. .++.+.+.+.++ .++|+++|++|+ ..+..++..+.+.+|++
T Consensus       229 ~~a~~lGa~~~i~~~~~~~~~~~~v~~~~~-~~~d~vld~~g~~~~~~~~~~~~~~~~G~~  288 (373)
T cd08299         229 AKAKELGATECINPQDYKKPIQEVLTEMTD-GGVDFSFEVIGRLDTMKAALASCHEGYGVS  288 (373)
T ss_pred             HHHHHcCCceEecccccchhHHHHHHHHhC-CCCeEEEECCCCcHHHHHHHHhhccCCCEE
Confidence            99999999888877541 236666777766 589999999997 67777777652345554

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group includes alcohol dehydrogenases corresponding to mammalian classes I, II, IV. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically

>PRK10083 putative oxidoreductase; Provisional

Probab=99.97  E-value=9.9e-30  Score=232.65  Aligned_cols=225  Identities=21%  Similarity=0.298  Sum_probs=185.3

Q ss_pred             cceEEecCCCCC----CCCCCCCCCCCCCCcEEEEeeeeecChhhHHHHcCCCCCCCCCCCcCCCceeEEEEEEccCCCC
Q psy1959          13 SDLLLYNGSGDA----KPTLPLVPGFEFSGTIIEKKMMTRINSSDLLLYNGSGDAKPTLPLVPGFEFSGTVIEVADTKSS   88 (296)
Q Consensus        13 ~~~~~~~~~~~~----~~~p~~~~~~~~~~evlvkv~~~~i~~~D~~~~~g~~~~~~~~p~~~G~e~~G~V~~v~~~~~~   88 (296)
                      |+++++++++..    .|.|.|.++     |++||+.++++|++|+..+.|.++. .++|.++|||++|+|+++      
T Consensus         1 m~a~~~~~~~~~~~~~~~~p~~~~~-----~vlV~v~~~gi~~~d~~~~~g~~~~-~~~p~i~G~e~~G~V~~v------   68 (339)
T PRK10083          1 MKSIVIEKPNSLAIEERPIPQPAAG-----EVRVKVKLAGICGSDSHIYRGHNPF-AKYPRVIGHEFFGVIDAV------   68 (339)
T ss_pred             CeEEEEecCCeeEEEeccCCCCCCC-----eEEEEEEEEEEcccchHHHcCCCCc-CCCCcccccceEEEEEEE------
Confidence            567777766544    577778888     9999999999999999999887654 356899999999999999      


Q ss_pred             CCCCCCCCCCCCCCCEEEEec-------------------------CCCCCcccceEeeeCCceEECCCCCCHHHHhhhc
Q psy1959          89 STEEDDEEDVLQVGDKVLALN-------------------------KELLHGFSDQCVVHTNDVFKIPEKMTFEHAASLA  143 (296)
Q Consensus        89 ~~~~g~~v~~~~~Gd~V~~~~-------------------------~~~~g~~~~~~~v~~~~~~~iP~~~~~~~aa~l~  143 (296)
                          |+++..+++||+|+...                         ....|+|++|+.++..+++++|++++++.++ +.
T Consensus        69 ----G~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~a~-~~  143 (339)
T PRK10083         69 ----GEGVDAARIGERVAVDPVISCGHCYPCSIGKPNVCTSLVVLGVHRDGGFSEYAVVPAKNAHRIPDAIADQYAV-MV  143 (339)
T ss_pred             ----CCCCccCCCCCEEEEccccCCCCCccccCcCcccCCCCceEEEccCCcceeeEEechHHeEECcCCCCHHHHh-hh
Confidence                99999999999998421                         0114899999999999999999999998876 66


Q ss_pred             cHHHHHHHHHHHHcCCCCCcEEEEEcCCCcHHHHHHHHHHHhCCCE-EEEEeCCcchHHHHHhcCCcEEEEcCCchhHHH
Q psy1959         144 DSYSTAQIVFSRHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKAK-VIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVN  222 (296)
Q Consensus       144 ~~~~ta~~~l~~~~~~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~~-Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  222 (296)
                      .++.++|.++ +.+++++|++|+|+| .|++|++++|+|++.+|++ ++++++++++.+.++++|++.++++++ .++.+
T Consensus       144 ~~~~~a~~~~-~~~~~~~g~~vlI~g-~g~vG~~~~~~a~~~~G~~~v~~~~~~~~~~~~~~~~Ga~~~i~~~~-~~~~~  220 (339)
T PRK10083        144 EPFTIAANVT-GRTGPTEQDVALIYG-AGPVGLTIVQVLKGVYNVKAVIVADRIDERLALAKESGADWVINNAQ-EPLGE  220 (339)
T ss_pred             chHHHHHHHH-HhcCCCCCCEEEEEC-CCHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHhCCcEEecCcc-ccHHH
Confidence            7888899655 788999999999999 5999999999994346985 777888899999999999988888765 45555


Q ss_pred             HHHHHhCCCcccEEEECCCC-ccHHHHHHHhhccCceEE
Q psy1959         223 KVLEVSGGKYANVVFEAVGG-EDKTDLIRQKGAWAALTF  260 (296)
Q Consensus       223 ~i~~~~~~~g~d~vld~~g~-~~~~~~~~~lg~~~g~~~  260 (296)
                      .+..  .+.++|++||++|+ ..+..+++++ +.+|++.
T Consensus       221 ~~~~--~g~~~d~vid~~g~~~~~~~~~~~l-~~~G~~v  256 (339)
T PRK10083        221 ALEE--KGIKPTLIIDAACHPSILEEAVTLA-SPAARIV  256 (339)
T ss_pred             HHhc--CCCCCCEEEECCCCHHHHHHHHHHh-hcCCEEE
Confidence            5533  23356799999996 6899999999 7777763

>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1

Probab=99.97  E-value=1.3e-29  Score=236.47  Aligned_cols=244  Identities=28%  Similarity=0.349  Sum_probs=202.4

Q ss_pred             cceEEecCCCCC----CCCCCCC-CCCCCCCcEEEEeeeeecChhhHHHHcCCCCCCCCCCCcCCCceeEEEEEEccCCC
Q psy1959          13 SDLLLYNGSGDA----KPTLPLV-PGFEFSGTIIEKKMMTRINSSDLLLYNGSGDAKPTLPLVPGFEFSGTVIEVADTKS   87 (296)
Q Consensus        13 ~~~~~~~~~~~~----~~~p~~~-~~~~~~~evlvkv~~~~i~~~D~~~~~g~~~~~~~~p~~~G~e~~G~V~~v~~~~~   87 (296)
                      |++++++++++.    .|.|.|. ++     +|+||+.++++|++|+..+.|.++. .++|.++|||++|+|+++     
T Consensus         1 m~a~~~~~~~~~~~~~~~~p~~~~~~-----~v~i~v~~~~i~~~d~~~~~g~~~~-~~~p~~~G~e~~G~V~~v-----   69 (386)
T cd08283           1 MKALVWHGKGDVRVEEVPDPKIEDPT-----DAIVRVTATAICGSDLHLYHGYIPG-MKKGDILGHEFMGVVEEV-----   69 (386)
T ss_pred             CeeEEEecCCCceEEeCCCCCCCCCC-----eEEEEEEEEecchhhhhhhcCCCCC-CCCCccccccceEEEEEe-----
Confidence            678888877666    5666664 78     9999999999999999999998765 456889999999999999     


Q ss_pred             CCCCCCCCCCCCCCCCEEEEecC---------------------------------------------CCCCcccceEee
Q psy1959          88 SSTEEDDEEDVLQVGDKVLALNK---------------------------------------------ELLHGFSDQCVV  122 (296)
Q Consensus        88 ~~~~~g~~v~~~~~Gd~V~~~~~---------------------------------------------~~~g~~~~~~~v  122 (296)
                           |++++++++||+|++...                                             ...|+|++|+++
T Consensus        70 -----G~~v~~~~~Gd~V~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v  144 (386)
T cd08283          70 -----GPEVRNLKVGDRVVVPFTIACGECFYCKRGLYSQCDNTNPSAEMAKLYGHAGAGIFGYSHLTGGYAGGQAEYVRV  144 (386)
T ss_pred             -----CCCCCCCCCCCEEEEcCcCCCCCChhhcCCCcccCCCcccccccccccccccccccccccccCCCCCeeEEEEEc
Confidence                 999999999999988531                                             024899999999


Q ss_pred             eCC--ceEECCCCCCHHHHhhhccHHHHHHHHHHHHcCCCCCcEEEEEcCCCcHHHHHHHHHHHhCCC-EEEEEeCCcch
Q psy1959         123 HTN--DVFKIPEKMTFEHAASLADSYSTAQIVFSRHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKA-KVIGVCNSEDK  199 (296)
Q Consensus       123 ~~~--~~~~iP~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~-~Vi~~~~~~~~  199 (296)
                      +.+  .++++|++++++++++++..+++||+++ ..+.+++|++|+|+|+ |++|++++++| +..|+ +|+++++++++
T Consensus       145 ~~~~~~~~~lp~~~~~~~aa~l~~~~~ta~~~l-~~~~~~~g~~VlV~g~-G~vG~~~~~la-~~~g~~~vi~~~~~~~~  221 (386)
T cd08283         145 PFADVGPFKIPDDLSDEKALFLSDILPTGYHAA-ELAEVKPGDTVAVWGC-GPVGLFAARSA-KLLGAERVIAIDRVPER  221 (386)
T ss_pred             ccccCeEEECCCCCCHHHHhhhccchhhhHHHH-hhccCCCCCEEEEECC-CHHHHHHHHHH-HHcCCCEEEEEcCCHHH
Confidence            988  8999999999999999999999999999 7899999999999975 99999999999 66898 69999999999


Q ss_pred             HHHHHhcCCcEEEEcCCch-hHHHHHHHHhCCCcccEEEECCCCc----------------------cHHHHHHHhhccC
Q psy1959         200 TDLIRQKGAWAALTFTNEK-SLVNKVLEVSGGKYANVVFEAVGGE----------------------DKTDLIRQKGAWA  256 (296)
Q Consensus       200 ~~~~~~~g~~~~~~~~~~~-~~~~~i~~~~~~~g~d~vld~~g~~----------------------~~~~~~~~lg~~~  256 (296)
                      .+.+++++...++++.+ . ++.+.+.+.+.++++|++||++|++                      .+..+++++ +++
T Consensus       222 ~~~~~~~~~~~vi~~~~-~~~~~~~l~~~~~~~~~D~vld~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~  299 (386)
T cd08283         222 LEMARSHLGAETINFEE-VDDVVEALRELTGGRGPDVCIDAVGMEAHGSPLHKAEQALLKLETDRPDALREAIQAV-RKG  299 (386)
T ss_pred             HHHHHHcCCcEEEcCCc-chHHHHHHHHHcCCCCCCEEEECCCCcccccccccccccccccccCchHHHHHHHHHh-ccC
Confidence            99999984446666655 4 4778888888777899999999853                      578889999 777


Q ss_pred             ceEEeec-----------ccceeeeeEEeccc
Q psy1959         257 ALTFTNE-----------KSLVNKVLEVSGGK  277 (296)
Q Consensus       257 g~~~~~~-----------~~~~~k~~~i~g~~  277 (296)
                      |++....           ..++.+.+++.++.
T Consensus       300 G~iv~~g~~~~~~~~~~~~~~~~~~~~i~~~~  331 (386)
T cd08283         300 GTVSIIGVYGGTVNKFPIGAAMNKGLTLRMGQ  331 (386)
T ss_pred             CEEEEEcCCCCCcCccCHHHHHhCCcEEEecc
Confidence            7664321           13455666666653

Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T

>PRK10754 quinone oxidoreductase, NADPH-dependent; Provisional

Probab=99.97  E-value=1.5e-29  Score=230.28  Aligned_cols=216  Identities=26%  Similarity=0.384  Sum_probs=192.3

Q ss_pred             CCCCCCCCCCCCCCcEEEEeeeeecChhhHHHHcCCCCCCCCCCCcCCCceeEEEEEEccCCCCCCCCCCCCCCCCCCCE
Q psy1959          25 KPTLPLVPGFEFSGTIIEKKMMTRINSSDLLLYNGSGDAKPTLPLVPGFEFSGTVIEVADTKSSSTEEDDEEDVLQVGDK  104 (296)
Q Consensus        25 ~~~p~~~~~~~~~~evlvkv~~~~i~~~D~~~~~g~~~~~~~~p~~~G~e~~G~V~~v~~~~~~~~~~g~~v~~~~~Gd~  104 (296)
                      .|.|.|.++     ||+||+.++++|++|+....|.++. ..+|.++|+|++|+|+.+          |+++..+++||+
T Consensus        21 ~~~~~~~~~-----ev~i~v~~~gi~~~d~~~~~g~~~~-~~~~~~~g~e~~G~v~~v----------G~~v~~~~~Gd~   84 (327)
T PRK10754         21 FTPADPAEN-----EVQVENKAIGINYIDTYIRSGLYPP-PSLPSGLGTEAAGVVSKV----------GSGVKHIKVGDR   84 (327)
T ss_pred             ccCCCCCCC-----EEEEEEEEEEcCHHHhhhcCCCCCC-CCCCCccCcceEEEEEEe----------CCCCCCCCCCCE
Confidence            567778888     9999999999999999998887653 346889999999999999          999999999999


Q ss_pred             EEEecCCCCCcccceEeeeCCceEECCCCCCHHHHhhhccHHHHHHHHHHHHcCCCCCcEEEEEcCCCcHHHHHHHHHHH
Q psy1959         105 VLALNKELLHGFSDQCVVHTNDVFKIPEKMTFEHAASLADSYSTAQIVFSRHAKLKEKQTVLVTAAGGGLGLAAVDMATK  184 (296)
Q Consensus       105 V~~~~~~~~g~~~~~~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vlI~Ga~g~vG~aa~~la~~  184 (296)
                      |+.... ..|+|++|+.++.+.++++|+++++++++.++..+.+||.++...+.+++|++++|+|+.|.+|++++++| +
T Consensus        85 V~~~~~-~~g~~~~~v~v~~~~~~~lp~~~~~~~~~~~~~~~~ta~~~l~~~~~~~~g~~vlI~g~~g~ig~~~~~la-k  162 (327)
T PRK10754         85 VVYAQS-ALGAYSSVHNVPADKAAILPDAISFEQAAASFLKGLTVYYLLRKTYEIKPDEQFLFHAAAGGVGLIACQWA-K  162 (327)
T ss_pred             EEECCC-CCcceeeEEEcCHHHceeCCCCCCHHHHHHHHHHHHHHHHHHHhhcCCCCCCEEEEEeCCcHHHHHHHHHH-H
Confidence            986532 24889999999999999999999999999899999999999888889999999999998899999999999 6


Q ss_pred             hCCCEEEEEeCCcchHHHHHhcCCcEEEEcCCchhHHHHHHHHhCCCcccEEEECCCCccHHHHHHHhhccCceEE
Q psy1959         185 IYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNKVLEVSGGKYANVVFEAVGGEDKTDLIRQKGAWAALTF  260 (296)
Q Consensus       185 ~~g~~Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~g~d~vld~~g~~~~~~~~~~lg~~~g~~~  260 (296)
                      ..|++|+++++++++.+.++++|++.+++.++ .++.+.+++.++++++|+++||+|+.....+++++ +.+|++.
T Consensus       163 ~~G~~v~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~~~~~~~~~~d~vl~~~~~~~~~~~~~~l-~~~g~~v  236 (327)
T PRK10754        163 ALGAKLIGTVGSAQKAQRAKKAGAWQVINYRE-ENIVERVKEITGGKKVRVVYDSVGKDTWEASLDCL-QRRGLMV  236 (327)
T ss_pred             HcCCEEEEEeCCHHHHHHHHHCCCCEEEcCCC-CcHHHHHHHHcCCCCeEEEEECCcHHHHHHHHHHh-ccCCEEE
Confidence            78999999999999999999999988887766 67788888888888999999999998888999999 7777664

>cd08297 CAD3 Cinnamyl alcohol dehydrogenases (CAD)

Probab=99.97  E-value=2.2e-29  Score=230.55  Aligned_cols=229  Identities=27%  Similarity=0.315  Sum_probs=198.4

Q ss_pred             cceEEecCCC--CC----CCCCCCCCCCCCCCcEEEEeeeeecChhhHHHHcCCCCCCCCCCCcCCCceeEEEEEEccCC
Q psy1959          13 SDLLLYNGSG--DA----KPTLPLVPGFEFSGTIIEKKMMTRINSSDLLLYNGSGDAKPTLPLVPGFEFSGTVIEVADTK   86 (296)
Q Consensus        13 ~~~~~~~~~~--~~----~~~p~~~~~~~~~~evlvkv~~~~i~~~D~~~~~g~~~~~~~~p~~~G~e~~G~V~~v~~~~   86 (296)
                      |+++++.+++  +.    .|.|.|.++     |++||+.++++|+.|...+.|.++.....|.++|+|++|+|+++    
T Consensus         1 m~a~~~~~~~~~~~~~~~~~~~~~~~~-----~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~V~~v----   71 (341)
T cd08297           1 MKAAVVEEFGEKPYEVKDVPVPEPGPG-----EVLVKLEASGVCHTDLHAALGDWPVKPKLPLIGGHEGAGVVVAV----   71 (341)
T ss_pred             CceEEeeccCCCCceEEEeeCCCCCCC-----eEEEEEEEeecchhHHHHHcCCCCcCCCCCccCCcccceEEEEe----
Confidence            6888888766  33    566777788     99999999999999999988876544456778999999999999    


Q ss_pred             CCCCCCCCCCCCCCCCCEEEEecC--------------------------CCCCcccceEeeeCCceEECCCCCCHHHHh
Q psy1959          87 SSSTEEDDEEDVLQVGDKVLALNK--------------------------ELLHGFSDQCVVHTNDVFKIPEKMTFEHAA  140 (296)
Q Consensus        87 ~~~~~~g~~v~~~~~Gd~V~~~~~--------------------------~~~g~~~~~~~v~~~~~~~iP~~~~~~~aa  140 (296)
                            |+++..+++||+|++...                          +..|+|++|+.++.+.++++|+++++.+++
T Consensus        72 ------G~~~~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~lp~~~~~~~~a  145 (341)
T cd08297          72 ------GPGVSGLKVGDRVGVKWLYDACGKCEYCRTGDETLCPNQKNSGYTVDGTFAEYAIADARYVTPIPDGLSFEQAA  145 (341)
T ss_pred             ------CCCCCCCCCCCEEEEecCCCCCCCCccccCCCcccCCCccccccccCCcceeEEEeccccEEECCCCCCHHHHH
Confidence                  999989999999987520                          014899999999999999999999999999


Q ss_pred             hhccHHHHHHHHHHHHcCCCCCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCcEEEEcCCchhH
Q psy1959         141 SLADSYSTAQIVFSRHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSL  220 (296)
Q Consensus       141 ~l~~~~~ta~~~l~~~~~~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  220 (296)
                      .++..+.+||+++.. .+++++++++|+|+++++|++++++| +.+|++|+++++++++.+.++++|++.++++++ .++
T Consensus       146 ~l~~~~~ta~~~~~~-~~~~~~~~vlV~g~~~~vg~~~~~~a-~~~g~~v~~~~~~~~~~~~~~~~g~~~v~~~~~-~~~  222 (341)
T cd08297         146 PLLCAGVTVYKALKK-AGLKPGDWVVISGAGGGLGHLGVQYA-KAMGLRVIAIDVGDEKLELAKELGADAFVDFKK-SDD  222 (341)
T ss_pred             HHHcchHHHHHHHHh-cCCCCCCEEEEECCCchHHHHHHHHH-HHCCCeEEEEeCCHHHHHHHHHcCCcEEEcCCC-ccH
Confidence            999999999999855 58999999999999888999999999 678999999999999999999999988888876 577


Q ss_pred             HHHHHHHhCCCcccEEEECCCC-ccHHHHHHHhhccCceEE
Q psy1959         221 VNKVLEVSGGKYANVVFEAVGG-EDKTDLIRQKGAWAALTF  260 (296)
Q Consensus       221 ~~~i~~~~~~~g~d~vld~~g~-~~~~~~~~~lg~~~g~~~  260 (296)
                      .+.+.+.++++++|+++|+.++ ..+..+++++ +.+|++.
T Consensus       223 ~~~~~~~~~~~~vd~vl~~~~~~~~~~~~~~~l-~~~g~~v  262 (341)
T cd08297         223 VEAVKELTGGGGAHAVVVTAVSAAAYEQALDYL-RPGGTLV  262 (341)
T ss_pred             HHHHHHHhcCCCCCEEEEcCCchHHHHHHHHHh-hcCCEEE
Confidence            7888888877899999997775 7889999999 7777664

These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha

>cd08244 MDR_enoyl_red Possible enoyl reductase

Probab=99.97  E-value=4.6e-29  Score=226.20  Aligned_cols=229  Identities=28%  Similarity=0.351  Sum_probs=193.0

Q ss_pred             cceEEecCCCCC-------CCCCCCCCCCCCCCcEEEEeeeeecChhhHHHHcCCCCC--CCCCCCcCCCceeEEEEEEc
Q psy1959          13 SDLLLYNGSGDA-------KPTLPLVPGFEFSGTIIEKKMMTRINSSDLLLYNGSGDA--KPTLPLVPGFEFSGTVIEVA   83 (296)
Q Consensus        13 ~~~~~~~~~~~~-------~~~p~~~~~~~~~~evlvkv~~~~i~~~D~~~~~g~~~~--~~~~p~~~G~e~~G~V~~v~   83 (296)
                      |+++++.+++..       .+.|.+.++     +|+|++.++++|+.|+....|..+.  ...+|.++|||++|+|+++ 
T Consensus         1 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~-----~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~p~~~g~e~~G~v~~~-   74 (324)
T cd08244           1 MRAIRLHEFGPPEVLVPEDVPDPVPGPG-----QVRIAVAAAGVHFVDTQLRSGWGPGPFPPELPYVPGGEVAGVVDAV-   74 (324)
T ss_pred             CeEEEEcCCCCccceEEeccCCCCCCCC-----EEEEEEEEEeCCHHHHHHhCCCCCCCCCCCCCcCCccceEEEEEEe-
Confidence            456666554332       233445667     9999999999999999998876432  2345788999999999999 


Q ss_pred             cCCCCCCCCCCCCCCCCCCCEEEEecCCCCCcccceEeeeCCceEECCCCCCHHHHhhhccHHHHHHHHHHHHcCCCCCc
Q psy1959          84 DTKSSSTEEDDEEDVLQVGDKVLALNKELLHGFSDQCVVHTNDVFKIPEKMTFEHAASLADSYSTAQIVFSRHAKLKEKQ  163 (296)
Q Consensus        84 ~~~~~~~~~g~~v~~~~~Gd~V~~~~~~~~g~~~~~~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~  163 (296)
                               |+++..+++||+|++......|+|++|+.++...++++|++++.+++++++..+.+||.. ....++++++
T Consensus        75 ---------G~~v~~~~~Gd~V~~~~~~~~g~~~~~~~v~~~~~~~lp~~~~~~~a~~~~~~~~ta~~~-~~~~~~~~~~  144 (324)
T cd08244          75 ---------GPGVDPAWLGRRVVAHTGRAGGGYAELAVADVDSLHPVPDGLDLEAAVAVVHDGRTALGL-LDLATLTPGD  144 (324)
T ss_pred             ---------CCCCCCCCCCCEEEEccCCCCceeeEEEEEchHHeEeCCCCCCHHHHhhhcchHHHHHHH-HHhcCCCCCC
Confidence                     999989999999999762123899999999999999999999999999999999999654 4778999999


Q ss_pred             EEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCcEEEEcCCchhHHHHHHHHhCCCcccEEEECCCCc
Q psy1959         164 TVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNKVLEVSGGKYANVVFEAVGGE  243 (296)
Q Consensus       164 ~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~g~d~vld~~g~~  243 (296)
                      +++|+|++|++|++++++| +..|++|+++++++++.+.++++|++..++..+ .++.+.+.+..+++++|+++|++|+.
T Consensus       145 ~vlI~g~~~~~g~~~~~la-~~~g~~v~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~~~~~~~~~~d~vl~~~g~~  222 (324)
T cd08244         145 VVLVTAAAGGLGSLLVQLA-KAAGATVVGAAGGPAKTALVRALGADVAVDYTR-PDWPDQVREALGGGGVTVVLDGVGGA  222 (324)
T ss_pred             EEEEEcCCchHHHHHHHHH-HHCCCEEEEEeCCHHHHHHHHHcCCCEEEecCC-ccHHHHHHHHcCCCCceEEEECCChH
Confidence            9999999999999999999 678999999999999999999999988787766 56777788777778899999999998


Q ss_pred             cHHHHHHHhhccCceEE
Q psy1959         244 DKTDLIRQKGAWAALTF  260 (296)
Q Consensus       244 ~~~~~~~~lg~~~g~~~  260 (296)
                      ....+++++ +.+|++.
T Consensus       223 ~~~~~~~~l-~~~g~~v  238 (324)
T cd08244         223 IGRAALALL-APGGRFL  238 (324)
T ss_pred             hHHHHHHHh-ccCcEEE
Confidence            789999999 6666664

Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydr

>cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like

Probab=99.97  E-value=2e-29  Score=231.34  Aligned_cols=244  Identities=26%  Similarity=0.311  Sum_probs=202.2

Q ss_pred             cceEEecCCCCC----CCCCCC-CCCCCCCCcEEEEeeeeecChhhHHHHcCCCCCCCCCCCcCCCceeEEEEEEccCCC
Q psy1959          13 SDLLLYNGSGDA----KPTLPL-VPGFEFSGTIIEKKMMTRINSSDLLLYNGSGDAKPTLPLVPGFEFSGTVIEVADTKS   87 (296)
Q Consensus        13 ~~~~~~~~~~~~----~~~p~~-~~~~~~~~evlvkv~~~~i~~~D~~~~~g~~~~~~~~p~~~G~e~~G~V~~v~~~~~   87 (296)
                      |+++++++++..    .|.|+| .++     ||+||+.++++|+.|+..+.|.+.. ..+|.++|||++|+|+++     
T Consensus         1 m~a~~~~~~~~~~~~~~~~p~~~~~~-----ev~v~v~a~~i~~~d~~~~~g~~~~-~~~~~~~g~e~~G~V~~~-----   69 (345)
T cd08286           1 MKALVYHGPGKISWEDRPKPTIQEPT-----DAIVKMLKTTICGTDLHILKGDVPT-VTPGRILGHEGVGVVEEV-----   69 (345)
T ss_pred             CceEEEecCCceeEEecCCCCCCCCC-----eEEEEEEEeeecchhhHHHcCCCCC-CCCCceecccceEEEEEe-----
Confidence            567777766655    566664 567     9999999999999999999887654 345789999999999999     


Q ss_pred             CCCCCCCCCCCCCCCCEEEEecC--------------------------CCCCcccceEeeeCC--ceEECCCCCCHHHH
Q psy1959          88 SSTEEDDEEDVLQVGDKVLALNK--------------------------ELLHGFSDQCVVHTN--DVFKIPEKMTFEHA  139 (296)
Q Consensus        88 ~~~~~g~~v~~~~~Gd~V~~~~~--------------------------~~~g~~~~~~~v~~~--~~~~iP~~~~~~~a  139 (296)
                           |+++..+++||+|++...                          ...|+|++|+.++..  .++++|++++..++
T Consensus        70 -----G~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~~~lp~~~~~~~a  144 (345)
T cd08286          70 -----GSAVTNFKVGDRVLISCISSCGTCGYCRKGLYSHCESGGWILGNLIDGTQAEYVRIPHADNSLYKLPEGVDEEAA  144 (345)
T ss_pred             -----ccCccccCCCCEEEECCcCCCCCChHHHCcCcccCCCcccccccccCCeeeeEEEcccccCceEECCCCCCHHHh
Confidence                 999989999999987531                          013889999999987  89999999999999


Q ss_pred             hhhccHHHHHHHHHHHHcCCCCCcEEEEEcCCCcHHHHHHHHHHHhCC-CEEEEEeCCcchHHHHHhcCCcEEEEcCCch
Q psy1959         140 ASLADSYSTAQIVFSRHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYK-AKVIGVCNSEDKTDLIRQKGAWAALTFTNEK  218 (296)
Q Consensus       140 a~l~~~~~ta~~~l~~~~~~~~g~~vlI~Ga~g~vG~aa~~la~~~~g-~~Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~  218 (296)
                      +.++.++.+||.++....++.++++++|+|+ |++|++++|+| +.+| .+|+++++++++.+.++++|++.++++++ .
T Consensus       145 a~l~~~~~ta~~~~~~~~~~~~g~~vlI~g~-g~~g~~~~~~a-~~~G~~~v~~~~~~~~~~~~~~~~g~~~~v~~~~-~  221 (345)
T cd08286         145 VMLSDILPTGYECGVLNGKVKPGDTVAIVGA-GPVGLAALLTA-QLYSPSKIIMVDLDDNRLEVAKKLGATHTVNSAK-G  221 (345)
T ss_pred             hhccchhHHHHHHHHhhcCCCCCCEEEEECC-CHHHHHHHHHH-HHcCCCeEEEEcCCHHHHHHHHHhCCCceecccc-c
Confidence            9999999999998777889999999999886 99999999999 6789 79999888888999999999988888876 5


Q ss_pred             hHHHHHHHHhCCCcccEEEECCCC-ccHHHHHHHhhccCceEEee----------cccceeeeeEEecc
Q psy1959         219 SLVNKVLEVSGGKYANVVFEAVGG-EDKTDLIRQKGAWAALTFTN----------EKSLVNKVLEVSGG  276 (296)
Q Consensus       219 ~~~~~i~~~~~~~g~d~vld~~g~-~~~~~~~~~lg~~~g~~~~~----------~~~~~~k~~~i~g~  276 (296)
                      ++.+.+.+.+.++++|++||++|+ ..+..+++++ +.+|++..-          ...++.+++++.+.
T Consensus       222 ~~~~~i~~~~~~~~~d~vld~~g~~~~~~~~~~~l-~~~g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~  289 (345)
T cd08286         222 DAIEQVLELTDGRGVDVVIEAVGIPATFELCQELV-APGGHIANVGVHGKPVDLHLEKLWIKNITITTG  289 (345)
T ss_pred             cHHHHHHHHhCCCCCCEEEECCCCHHHHHHHHHhc-cCCcEEEEecccCCCCCcCHHHHhhcCcEEEee
Confidence            677777777777789999999997 6788899999 777766421          12235567777653

This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (

>cd05280 MDR_yhdh_yhfp Yhdh and yhfp-like putative quinone oxidoreductases

Probab=99.97  E-value=6.4e-29  Score=225.36  Aligned_cols=243  Identities=22%  Similarity=0.313  Sum_probs=197.0

Q ss_pred             cceEEecCCCC---C----CCCCCCCCCCCCCCcEEEEeeeeecChhhHHHHcCCCCCCCCCCCcCCCceeEEEEEEccC
Q psy1959          13 SDLLLYNGSGD---A----KPTLPLVPGFEFSGTIIEKKMMTRINSSDLLLYNGSGDAKPTLPLVPGFEFSGTVIEVADT   85 (296)
Q Consensus        13 ~~~~~~~~~~~---~----~~~p~~~~~~~~~~evlvkv~~~~i~~~D~~~~~g~~~~~~~~p~~~G~e~~G~V~~v~~~   85 (296)
                      |++++++.+++   .    .|.|.+.++     +|+||+.++++|++|+....|.++....+|.++|||++|+|+++   
T Consensus         1 ~~a~~~~~~~~~~~~~~~~~~~p~~~~~-----~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~v~~~---   72 (325)
T cd05280           1 FKALVVEEQDGGVSLFLRTLPLDDLPEG-----DVLIRVHYSSLNYKDALAATGNGGVTRNYPHTPGIDAAGTVVSS---   72 (325)
T ss_pred             CceEEEcccCCCCcceEEeCCCCCCCCC-----eEEEEEEEeecChHHHHHhcCCCCCCCCCCCccCcccEEEEEEe---
Confidence            67888888774   2    567777888     99999999999999999998876654556889999999999998   


Q ss_pred             CCCCCCCCCCCCCCCCCCEEEEecC----CCCCcccceEeeeCCceEECCCCCCHHHHhhhccHHHHHHHHHHHHcCC--
Q psy1959          86 KSSSTEEDDEEDVLQVGDKVLALNK----ELLHGFSDQCVVHTNDVFKIPEKMTFEHAASLADSYSTAQIVFSRHAKL--  159 (296)
Q Consensus        86 ~~~~~~~g~~v~~~~~Gd~V~~~~~----~~~g~~~~~~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~l~~~~~~--  159 (296)
                             +  +..+++||+|++...    ...|+|++|++++.+.++++|+++++++++.+++.+.+||.++......  
T Consensus        73 -------~--~~~~~~Gd~V~~~~~~~g~~~~g~~~~~~~v~~~~~~~lp~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~  143 (325)
T cd05280          73 -------D--DPRFREGDEVLVTGYDLGMNTDGGFAEYVRVPADWVVPLPEGLSLREAMILGTAGFTAALSVHRLEDNGQ  143 (325)
T ss_pred             -------C--CCCCCCCCEEEEcccccCCCCCceeEEEEEEchhhEEECCCCCCHHHHHhhHHHHHHHHHHHHHHhhccC
Confidence                   4  346999999998631    1148999999999999999999999999999999999999998665433  


Q ss_pred             C-CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCcEEEEcCCchhHHHHHHHHhCCCcccEEEE
Q psy1959         160 K-EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNKVLEVSGGKYANVVFE  238 (296)
Q Consensus       160 ~-~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~g~d~vld  238 (296)
                      . .+++|+|+|++|++|++++++| +.+|++|+++++++++.+.++++|++.+++.++ .  ...+.+...++++|+++|
T Consensus       144 ~~~~~~vlI~g~~g~vg~~~~~~a-~~~g~~v~~~~~~~~~~~~~~~~g~~~~~~~~~-~--~~~~~~~~~~~~~d~vi~  219 (325)
T cd05280         144 TPEDGPVLVTGATGGVGSIAVAIL-AKLGYTVVALTGKEEQADYLKSLGASEVLDRED-L--LDESKKPLLKARWAGAID  219 (325)
T ss_pred             CCCCCEEEEECCccHHHHHHHHHH-HHcCCEEEEEeCCHHHHHHHHhcCCcEEEcchh-H--HHHHHHHhcCCCccEEEE
Confidence            5 4579999999999999999999 678999999999999999999999988776643 2  223334444567999999


Q ss_pred             CCCCccHHHHHHHhhccCceEEee-----------cccceeeeeEEeccc
Q psy1959         239 AVGGEDKTDLIRQKGAWAALTFTN-----------EKSLVNKVLEVSGGK  277 (296)
Q Consensus       239 ~~g~~~~~~~~~~lg~~~g~~~~~-----------~~~~~~k~~~i~g~~  277 (296)
                      ++|++.+..+++++ +.+|++...           ...++.+++++.+..
T Consensus       220 ~~~~~~~~~~~~~l-~~~g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~  268 (325)
T cd05280         220 TVGGDVLANLLKQT-KYGGVVASCGNAAGPELTTTVLPFILRGVSLLGID  268 (325)
T ss_pred             CCchHHHHHHHHhh-cCCCEEEEEecCCCCccccccchheeeeeEEEEEE
Confidence            99999999999999 777766421           112346777777754

Yhdh and yhfp-like putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and so

>cd08250 Mgc45594_like Mgc45594 gene product and other MDR family members

Probab=99.97  E-value=2.8e-29  Score=228.51  Aligned_cols=225  Identities=29%  Similarity=0.380  Sum_probs=194.9

Q ss_pred             CcceEEecCCCC--C-------CCCCCCCCCCCCCCcEEEEeeeeecChhhHHHHcCCCCCCCCCCCcCCCceeEEEEEE
Q psy1959          12 SSDLLLYNGSGD--A-------KPTLPLVPGFEFSGTIIEKKMMTRINSSDLLLYNGSGDAKPTLPLVPGFEFSGTVIEV   82 (296)
Q Consensus        12 ~~~~~~~~~~~~--~-------~~~p~~~~~~~~~~evlvkv~~~~i~~~D~~~~~g~~~~~~~~p~~~G~e~~G~V~~v   82 (296)
                      +|+++++++++.  +       .+.|.|.++     |++||+.++++|+.|+....|.+.....+|.++|+|++|+|+.+
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----ev~i~v~~~gi~~~d~~~~~g~~~~~~~~p~~~g~e~~G~v~~v   75 (329)
T cd08250           1 SFRKLVVHRLSPNFREATSIVDVPVPLPGPG-----EVLVKNRFVGINASDINFTAGRYDPGVKPPFDCGFEGVGEVVAV   75 (329)
T ss_pred             CceEEEeccCCCCcccCceEEecCCCCCCCC-----EEEEEEEEEecCHHHHHHHhCCCCCCCCCCcccCceeEEEEEEE
Confidence            488888888777  2       455667778     99999999999999999988876544567889999999999999


Q ss_pred             ccCCCCCCCCCCCCCCCCCCCEEEEecCCCCCcccceEeeeCCceEECCCCCCHHHHhhhccHHHHHHHHHHHHcCCCCC
Q psy1959          83 ADTKSSSTEEDDEEDVLQVGDKVLALNKELLHGFSDQCVVHTNDVFKIPEKMTFEHAASLADSYSTAQIVFSRHAKLKEK  162 (296)
Q Consensus        83 ~~~~~~~~~~g~~v~~~~~Gd~V~~~~~~~~g~~~~~~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g  162 (296)
                                |+++..+++||+|++...   |+|++|++++.+.++++|++.  .+++.++.++.+||+++.+..++++|
T Consensus        76 ----------G~~v~~~~~Gd~V~~~~~---g~~~s~~~v~~~~~~~ip~~~--~~~a~l~~~~~ta~~~l~~~~~~~~~  140 (329)
T cd08250          76 ----------GEGVTDFKVGDAVATMSF---GAFAEYQVVPARHAVPVPELK--PEVLPLLVSGLTASIALEEVGEMKSG  140 (329)
T ss_pred             ----------CCCCCCCCCCCEEEEecC---cceeEEEEechHHeEECCCCc--chhhhcccHHHHHHHHHHHhcCCCCC
Confidence                      999989999999999865   899999999999999999973  46677999999999999888899999


Q ss_pred             cEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCcEEEEcCCchhHHHHHHHHhCCCcccEEEECCCC
Q psy1959         163 QTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNKVLEVSGGKYANVVFEAVGG  242 (296)
Q Consensus       163 ~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~g~d~vld~~g~  242 (296)
                      ++++|+|++|.+|++++++| +..|++|+++++++++.+.++++|++.+++..+ .++.+.+....+ +++|+++|++|+
T Consensus       141 ~~vlI~ga~g~ig~~~~~~a-~~~g~~v~~~~~~~~~~~~~~~~g~~~v~~~~~-~~~~~~~~~~~~-~~vd~v~~~~g~  217 (329)
T cd08250         141 ETVLVTAAAGGTGQFAVQLA-KLAGCHVIGTCSSDEKAEFLKSLGCDRPINYKT-EDLGEVLKKEYP-KGVDVVYESVGG  217 (329)
T ss_pred             CEEEEEeCccHHHHHHHHHH-HHcCCeEEEEeCcHHHHHHHHHcCCceEEeCCC-ccHHHHHHHhcC-CCCeEEEECCcH
Confidence            99999999999999999999 668999999999999999999999888777665 556666666554 689999999999


Q ss_pred             ccHHHHHHHhhccCceEE
Q psy1959         243 EDKTDLIRQKGAWAALTF  260 (296)
Q Consensus       243 ~~~~~~~~~lg~~~g~~~  260 (296)
                      ..+..+++++ +.+|++.
T Consensus       218 ~~~~~~~~~l-~~~g~~v  234 (329)
T cd08250         218 EMFDTCVDNL-ALKGRLI  234 (329)
T ss_pred             HHHHHHHHHh-ccCCeEE
Confidence            8899999999 7777663

Includes Human Mgc45594 gene product of undetermined function. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.

>cd08246 crotonyl_coA_red crotonyl-CoA reductase

Probab=99.97  E-value=3e-29  Score=234.43  Aligned_cols=235  Identities=21%  Similarity=0.298  Sum_probs=193.5

Q ss_pred             CCCCCCCCCCCCCCcEEEEeeeeecChhhHHHHcCCCCC---------CCCCCCcCCCceeEEEEEEccCCCCCCCCCCC
Q psy1959          25 KPTLPLVPGFEFSGTIIEKKMMTRINSSDLLLYNGSGDA---------KPTLPLVPGFEFSGTVIEVADTKSSSTEEDDE   95 (296)
Q Consensus        25 ~~~p~~~~~~~~~~evlvkv~~~~i~~~D~~~~~g~~~~---------~~~~p~~~G~e~~G~V~~v~~~~~~~~~~g~~   95 (296)
                      .|.|.+.++     ||+||+.+++||++|++...|....         ....+.++|||++|+|+++          |++
T Consensus        35 ~~~p~l~~~-----evlI~v~~~gi~~~d~~~~~g~~~~~~~~~~~~~~~~~~~~~G~e~~G~V~~v----------G~~   99 (393)
T cd08246          35 VPVPELGPG-----EVLVAVMAAGVNYNNVWAALGEPVSTFAARQRRGRDEPYHIGGSDASGIVWAV----------GEG   99 (393)
T ss_pred             cCCCCCCCC-----EEEEEEEEEeeccchhhhhcCCCccccccccccCCCCCccccccceEEEEEEe----------CCC
Confidence            577778888     9999999999999999887764110         0112358999999999999          999


Q ss_pred             CCCCCCCCEEEEecC--------------------------CCCCcccceEeeeCCceEECCCCCCHHHHhhhccHHHHH
Q psy1959          96 EDVLQVGDKVLALNK--------------------------ELLHGFSDQCVVHTNDVFKIPEKMTFEHAASLADSYSTA  149 (296)
Q Consensus        96 v~~~~~Gd~V~~~~~--------------------------~~~g~~~~~~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta  149 (296)
                      ++.+++||+|++...                          ...|+|++|++++...++++|+++++++++.+++++.+|
T Consensus       100 v~~~~~Gd~V~~~~~~~~~~~~~c~~~~~~~~~~~~~~g~~~~~g~~a~y~~v~~~~l~~iP~~l~~~~aa~l~~~~~tA  179 (393)
T cd08246         100 VKNWKVGDEVVVHCSVWDGNDPERAGGDPMFDPSQRIWGYETNYGSFAQFALVQATQLMPKPKHLSWEEAAAYMLVGATA  179 (393)
T ss_pred             CCcCCCCCEEEEeccccccCcccccccccccccccccccccCCCCcceeEEEechHHeEECCCCCCHHHHhhhcccHHHH
Confidence            999999999998642                          013899999999999999999999999999999999999


Q ss_pred             HHHHHHH--cCCCCCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCcEEEEcCCc----------
Q psy1959         150 QIVFSRH--AKLKEKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNE----------  217 (296)
Q Consensus       150 ~~~l~~~--~~~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~~~~~~~~~----------  217 (296)
                      |+++...  ++++++++|+|+|++|++|++++++| +.+|++++++++++++.+.++++|++.+++.++.          
T Consensus       180 ~~al~~~~~~~~~~g~~vlV~ga~g~iG~a~~~la-k~~G~~vv~~~~s~~~~~~~~~~G~~~~i~~~~~~~~~~~~~~~  258 (393)
T cd08246         180 YRMLFGWNPNTVKPGDNVLIWGASGGLGSMAIQLA-RAAGANPVAVVSSEEKAEYCRALGAEGVINRRDFDHWGVLPDVN  258 (393)
T ss_pred             HHHHhhcccccCCCCCEEEEECCCcHHHHHHHHHH-HHcCCeEEEEeCCHHHHHHHHHcCCCEEEccccccccccccccc
Confidence            9998655  78899999999999999999999999 6789999999999999999999999888775331          


Q ss_pred             -----------hhHHHHHHHHhCCC-cccEEEECCCCccHHHHHHHhhccCceEEee-----------cccceeeeeEEe
Q psy1959         218 -----------KSLVNKVLEVSGGK-YANVVFEAVGGEDKTDLIRQKGAWAALTFTN-----------EKSLVNKVLEVS  274 (296)
Q Consensus       218 -----------~~~~~~i~~~~~~~-g~d~vld~~g~~~~~~~~~~lg~~~g~~~~~-----------~~~~~~k~~~i~  274 (296)
                                 ..+.+.+.++++++ ++|++||++|+..+..+++++ +.+|++...           ...+..++.++.
T Consensus       259 ~~~~~~~~~~~~~~~~~v~~l~~~~~g~d~vid~~g~~~~~~~~~~l-~~~G~~v~~g~~~~~~~~~~~~~l~~~~~~i~  337 (393)
T cd08246         259 SEAYTAWTKEARRFGKAIWDILGGREDPDIVFEHPGRATFPTSVFVC-DRGGMVVICAGTTGYNHTYDNRYLWMRQKRIQ  337 (393)
T ss_pred             chhhhhhhhccchHHHHHHHHhCCCCCCeEEEECCchHhHHHHHHHh-ccCCEEEEEcccCCCCCCCcHHHHhhheeEEE
Confidence                       13556777888777 899999999998899999999 766766331           123445666666


Q ss_pred             cc
Q psy1959         275 GG  276 (296)
Q Consensus       275 g~  276 (296)
                      ++
T Consensus       338 g~  339 (393)
T cd08246         338 GS  339 (393)
T ss_pred             ec
Confidence            65

Crotonyl-CoA reductase, a member of the medium chain dehydrogenase/reductase family, catalyzes the NADPH-dependent conversion of crotonyl-CoA to butyryl-CoA, a step in (2S)-methylmalonyl-CoA production for straight-chain fatty acid biosynthesis. Like enoyl reductase, another enzyme in fatty acid synthesis, crotonyl-CoA reductase is a member of the zinc-dependent alcohol dehydrogenase-like medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossma

>cd08256 Zn_ADH2 Alcohol dehydrogenases of the MDR family

Probab=99.97  E-value=4e-29  Score=229.89  Aligned_cols=226  Identities=23%  Similarity=0.362  Sum_probs=191.0

Q ss_pred             cceEEecCCCCC----CCCCCCCCCCCCCCcEEEEeeeeecChhhHHHHcCCCCCC--------CCCCCcCCCceeEEEE
Q psy1959          13 SDLLLYNGSGDA----KPTLPLVPGFEFSGTIIEKKMMTRINSSDLLLYNGSGDAK--------PTLPLVPGFEFSGTVI   80 (296)
Q Consensus        13 ~~~~~~~~~~~~----~~~p~~~~~~~~~~evlvkv~~~~i~~~D~~~~~g~~~~~--------~~~p~~~G~e~~G~V~   80 (296)
                      ||++++.++++.    .|.|++.++     +|+||+.++++|+.|+....|.....        ..+|.++|||++|+|+
T Consensus         1 mka~~~~~~~~~~~~~~~~p~~~~~-----~v~V~v~a~~i~~~d~~~~~g~~~~~~~~~~~~~~~~p~~~g~e~~G~v~   75 (350)
T cd08256           1 MRAVVCHGPQDYRLEEVPVPRPGPG-----EILVKVEACGICAGDIKCYHGAPSFWGDENQPPYVKPPMIPGHEFVGRVV   75 (350)
T ss_pred             CeeEEEecCCceEEEECCCCCCCCC-----eEEEEEEEEEEcccchhhhcCCCccccccccCccCCCCcccCcceeEEEE
Confidence            577888777655    577888889     99999999999999999888764210        1457789999999999


Q ss_pred             EEccCCCCCCCCCCCCC--CCCCCCEEEE---------------------------ecCCCCCcccceEeeeCC-ceEEC
Q psy1959          81 EVADTKSSSTEEDDEED--VLQVGDKVLA---------------------------LNKELLHGFSDQCVVHTN-DVFKI  130 (296)
Q Consensus        81 ~v~~~~~~~~~~g~~v~--~~~~Gd~V~~---------------------------~~~~~~g~~~~~~~v~~~-~~~~i  130 (296)
                      ++          |+++.  +|++||+|++                           +.....|+|++|+.++++ .++++
T Consensus        76 ~v----------G~~v~~~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~l  145 (350)
T cd08256          76 EL----------GEGAEERGVKVGDRVISEQIVPCWNCRFCNRGQYWMCQKHDLYGFQNNVNGGMAEYMRFPKEAIVHKV  145 (350)
T ss_pred             Ee----------CCCcccCCCCCCCEEEECCcCCCCCChHHhCcCcccCcCccceeeccCCCCcceeeEEcccccceEEC
Confidence            99          99998  8999999987                           211124899999999988 57899


Q ss_pred             CCCCCHHHHhhhccHHHHHHHHHHHHcCCCCCcEEEEEcCCCcHHHHHHHHHHHhCCC-EEEEEeCCcchHHHHHhcCCc
Q psy1959         131 PEKMTFEHAASLADSYSTAQIVFSRHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKA-KVIGVCNSEDKTDLIRQKGAW  209 (296)
Q Consensus       131 P~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~-~Vi~~~~~~~~~~~~~~~g~~  209 (296)
                      |+++++++++.+ .++.++|.++ +.+++++|++|+|.| .|++|++++++| +.+|+ .++++++++++.+.++++|++
T Consensus       146 P~~~~~~~aa~~-~~~~ta~~a~-~~~~~~~g~~vlI~g-~g~vG~~~~~~a-~~~G~~~v~~~~~~~~~~~~~~~~g~~  221 (350)
T cd08256         146 PDDIPPEDAILI-EPLACALHAV-DRANIKFDDVVVLAG-AGPLGLGMIGAA-RLKNPKKLIVLDLKDERLALARKFGAD  221 (350)
T ss_pred             CCCCCHHHHhhh-hHHHHHHHHH-HhcCCCCCCEEEEEC-CCHHHHHHHHHH-HHcCCcEEEEEcCCHHHHHHHHHcCCc
Confidence            999999999988 8999999998 788999999999955 599999999999 66887 577788888899999999998


Q ss_pred             EEEEcCCchhHHHHHHHHhCCCcccEEEECCCC-ccHHHHHHHhhccCceE
Q psy1959         210 AALTFTNEKSLVNKVLEVSGGKYANVVFEAVGG-EDKTDLIRQKGAWAALT  259 (296)
Q Consensus       210 ~~~~~~~~~~~~~~i~~~~~~~g~d~vld~~g~-~~~~~~~~~lg~~~g~~  259 (296)
                      .+++++. .++.+.+.+.++++++|+++|++|+ ..+..+++++ +.+|++
T Consensus       222 ~v~~~~~-~~~~~~~~~~~~~~~vdvvld~~g~~~~~~~~~~~l-~~~G~~  270 (350)
T cd08256         222 VVLNPPE-VDVVEKIKELTGGYGCDIYIEATGHPSAVEQGLNMI-RKLGRF  270 (350)
T ss_pred             EEecCCC-cCHHHHHHHHhCCCCCCEEEECCCChHHHHHHHHHh-hcCCEE
Confidence            8887765 6777788888877889999999996 6788899999 777766

This group has the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH,

>cd08240 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehydrogenase

Probab=99.97  E-value=2.6e-29  Score=231.07  Aligned_cols=228  Identities=23%  Similarity=0.262  Sum_probs=193.7

Q ss_pred             cceEEecCCCCC-----CCCCCCCCCCCCCCcEEEEeeeeecChhhHHHHcCCCCC-----------CCCCCCcCCCcee
Q psy1959          13 SDLLLYNGSGDA-----KPTLPLVPGFEFSGTIIEKKMMTRINSSDLLLYNGSGDA-----------KPTLPLVPGFEFS   76 (296)
Q Consensus        13 ~~~~~~~~~~~~-----~~~p~~~~~~~~~~evlvkv~~~~i~~~D~~~~~g~~~~-----------~~~~p~~~G~e~~   76 (296)
                      |+++++..++..     .|.|++.++     ||+||+.++++|++|+..+.|.++.           ...+|.++|+|++
T Consensus         1 ~~a~~~~~~~~~~~~~~~~~p~~~~~-----ev~V~v~~~~i~~~d~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~e~~   75 (350)
T cd08240           1 MKAAAVVEPGKPLEEVEIDTPKPPGT-----EVLVKVTACGVCHSDLHIWDGGYDLGGGKTMSLDDRGVKLPLVLGHEIV   75 (350)
T ss_pred             CeeEEeccCCCCceEEecCCCCCCCC-----eEEEEEEEEecCchhHHHHcCCCCccccccccccccCCCCCccccccee
Confidence            567777655543     577778888     9999999999999999998886532           2345678999999


Q ss_pred             EEEEEEccCCCCCCCCCCCCCCCCCCCEEEEecC-------------------------CCCCcccceEeeeCCceEECC
Q psy1959          77 GTVIEVADTKSSSTEEDDEEDVLQVGDKVLALNK-------------------------ELLHGFSDQCVVHTNDVFKIP  131 (296)
Q Consensus        77 G~V~~v~~~~~~~~~~g~~v~~~~~Gd~V~~~~~-------------------------~~~g~~~~~~~v~~~~~~~iP  131 (296)
                      |+|+++          |++++.+++||+|+++..                         ...|+|++|+.++.+.++++|
T Consensus        76 G~V~~v----------G~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p  145 (350)
T cd08240          76 GEVVAV----------GPDAADVKVGDKVLVYPWIGCGECPVCLAGDENLCAKGRALGIFQDGGYAEYVIVPHSRYLVDP  145 (350)
T ss_pred             EEEEee----------CCCCCCCCCCCEEEECCcCCCCCChHHHCcCcccCCCCCceeeeccCcceeeEEecHHHeeeCC
Confidence            999999          999999999999998621                         024899999999999999999


Q ss_pred             CCCCHHHHhhhccHHHHHHHHHHHHcCCCCCcEEEEEcCCCcHHHHHHHHHHHhCCC-EEEEEeCCcchHHHHHhcCCcE
Q psy1959         132 EKMTFEHAASLADSYSTAQIVFSRHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKA-KVIGVCNSEDKTDLIRQKGAWA  210 (296)
Q Consensus       132 ~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~-~Vi~~~~~~~~~~~~~~~g~~~  210 (296)
                      +++++.+++.+.+.+.+||+++.....++++++|+|+| .|++|++++|+| +..|+ +|++++.++++.+.++++|++.
T Consensus       146 ~~~s~~~aa~l~~~~~tA~~~~~~~~~~~~~~~vlI~g-~g~vg~~~~~~a-~~~G~~~v~~~~~~~~~~~~~~~~g~~~  223 (350)
T cd08240         146 GGLDPALAATLACSGLTAYSAVKKLMPLVADEPVVIIG-AGGLGLMALALL-KALGPANIIVVDIDEAKLEAAKAAGADV  223 (350)
T ss_pred             CCCCHHHeehhhchhhhHHHHHHhcccCCCCCEEEEEC-CcHHHHHHHHHH-HHcCCCeEEEEeCCHHHHHHHHHhCCcE
Confidence            99999999999999999999997777777899999997 499999999999 67899 7889988999999999999987


Q ss_pred             EEEcCCchhHHHHHHHHhCCCcccEEEECCCC-ccHHHHHHHhhccCceEE
Q psy1959         211 ALTFTNEKSLVNKVLEVSGGKYANVVFEAVGG-EDKTDLIRQKGAWAALTF  260 (296)
Q Consensus       211 ~~~~~~~~~~~~~i~~~~~~~g~d~vld~~g~-~~~~~~~~~lg~~~g~~~  260 (296)
                      +++.++ .++.+.+.+..++ ++|++||++|. ..+..+++++ +.+|++.
T Consensus       224 ~~~~~~-~~~~~~~~~~~~~-~~d~vid~~g~~~~~~~~~~~l-~~~g~~v  271 (350)
T cd08240         224 VVNGSD-PDAAKRIIKAAGG-GVDAVIDFVNNSATASLAFDIL-AKGGKLV  271 (350)
T ss_pred             EecCCC-ccHHHHHHHHhCC-CCcEEEECCCCHHHHHHHHHHh-hcCCeEE
Confidence            777765 5666777777665 89999999996 7899999999 7777774

6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzy

>KOG1198|consensus

Probab=99.97  E-value=1.5e-29  Score=230.85  Aligned_cols=212  Identities=29%  Similarity=0.366  Sum_probs=187.0

Q ss_pred             CCCCCCCCCCCCCCcEEEEeeeeecChhhHHHHcCCCCCCC---CCCCcCCCceeEE---EEEEccCCCCCCCCC-CCCC
Q psy1959          25 KPTLPLVPGFEFSGTIIEKKMMTRINSSDLLLYNGSGDAKP---TLPLVPGFEFSGT---VIEVADTKSSSTEED-DEED   97 (296)
Q Consensus        25 ~~~p~~~~~~~~~~evlvkv~~~~i~~~D~~~~~g~~~~~~---~~p~~~G~e~~G~---V~~v~~~~~~~~~~g-~~v~   97 (296)
                      .|.|.|+++     ++++++.++++|+.|+.++.|.++...   .+|.+.+.++.|+   +..+          | +.+.
T Consensus        25 ~~iP~~~~~-----~~~i~~~a~a~NpiD~~~~~g~~~~~~~~~~~p~ii~~~g~~~~~~~~~~----------g~~~~~   89 (347)
T KOG1198|consen   25 VPIPEPEDG-----EVLIKVVAVALNPIDLKIRNGYYSPIPLGREFPGIIGRDGSGVVGAVESV----------GDDVVG   89 (347)
T ss_pred             ccCCCCCCC-----ceEEEEEEeccChHHHHHHccCcCCCCCccCCCCccccccCCceeEEecc----------cccccc
Confidence            788889999     999999999999999999999888766   6786555555554   4444          5 4566


Q ss_pred             CCCCCCEEEEecCCCCCcccceEeeeCCceEECCCCCCHHHHhhhccHHHHHHHHHHHHc------CCCCCcEEEEEcCC
Q psy1959          98 VLQVGDKVLALNKELLHGFSDQCVVHTNDVFKIPEKMTFEHAASLADSYSTAQIVFSRHA------KLKEKQTVLVTAAG  171 (296)
Q Consensus        98 ~~~~Gd~V~~~~~~~~g~~~~~~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~l~~~~------~~~~g~~vlI~Ga~  171 (296)
                      .+..||.+.....  .|+|+||+++|...++++|++++++++|+++.++.|||.++....      +.++|++|||+|++
T Consensus        90 ~~~~g~~~~~~~~--~g~~aey~v~p~~~~~~~P~~l~~~~aa~~p~~~~tA~~al~~~~~~~~~~~~~~g~~vLv~ggs  167 (347)
T KOG1198|consen   90 GWVHGDAVVAFLS--SGGLAEYVVVPEKLLVKIPESLSFEEAAALPLAALTALSALFQLAPGKRSKKLSKGKSVLVLGGS  167 (347)
T ss_pred             ceEeeeEEeeccC--CCceeeEEEcchhhccCCCCccChhhhhcCchHHHHHHHHHHhccccccccccCCCCeEEEEeCC
Confidence            7888988888777  799999999999999999999999999999999999999999999      89999999999999


Q ss_pred             CcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCcEEEEcCCchhHHHHHHHHhCCCcccEEEECCCCccHHHHHHH
Q psy1959         172 GGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNKVLEVSGGKYANVVFEAVGGEDKTDLIRQ  251 (296)
Q Consensus       172 g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~g~d~vld~~g~~~~~~~~~~  251 (296)
                      |++|++++|+| +..++..+++++++++.++++++|++.+++|++ .++.+.+...+ +.++|+||||+|+.....+..+
T Consensus       168 ggVG~~aiQlA-k~~~~~~v~t~~s~e~~~l~k~lGAd~vvdy~~-~~~~e~~kk~~-~~~~DvVlD~vg~~~~~~~~~~  244 (347)
T KOG1198|consen  168 GGVGTAAIQLA-KHAGAIKVVTACSKEKLELVKKLGADEVVDYKD-ENVVELIKKYT-GKGVDVVLDCVGGSTLTKSLSC  244 (347)
T ss_pred             cHHHHHHHHHH-HhcCCcEEEEEcccchHHHHHHcCCcEeecCCC-HHHHHHHHhhc-CCCccEEEECCCCCccccchhh
Confidence            99999999999 566776677777999999999999999999999 89999999988 7899999999999888888888


Q ss_pred             hhccC
Q psy1959         252 KGAWA  256 (296)
Q Consensus       252 lg~~~  256 (296)
                      +..++
T Consensus       245 l~~~g  249 (347)
T KOG1198|consen  245 LLKGG  249 (347)
T ss_pred             hccCC
Confidence            83333

>cd08263 Zn_ADH10 Alcohol dehydrogenases of the MDR family

Probab=99.97  E-value=4.3e-29  Score=231.23  Aligned_cols=227  Identities=25%  Similarity=0.328  Sum_probs=196.1

Q ss_pred             cceEEecCCCCC-----CCCCCCCCCCCCCCcEEEEeeeeecChhhHHHHcCCCCCCCCCCCcCCCceeEEEEEEccCCC
Q psy1959          13 SDLLLYNGSGDA-----KPTLPLVPGFEFSGTIIEKKMMTRINSSDLLLYNGSGDAKPTLPLVPGFEFSGTVIEVADTKS   87 (296)
Q Consensus        13 ~~~~~~~~~~~~-----~~~p~~~~~~~~~~evlvkv~~~~i~~~D~~~~~g~~~~~~~~p~~~G~e~~G~V~~v~~~~~   87 (296)
                      |+++++..++..     .|.|.+.++     ||+||+.++++|++|+....|.++.  .+|.++|||++|+|+++     
T Consensus         1 ~~a~~~~~~~~~~~~~~~~~~~~~~~-----~v~v~v~~~~l~~~d~~~~~~~~~~--~~p~~~g~e~~G~v~~v-----   68 (367)
T cd08263           1 MKAAVLKGPNPPLTIEEIPVPRPKEG-----EILIRVAACGVCHSDLHVLKGELPF--PPPFVLGHEISGEVVEV-----   68 (367)
T ss_pred             CeeEEEecCCCCcEEEEeeCCCCCCC-----eEEEEEEEeeeCcchHHHhcCCCCC--CCCcccccccceEEEEe-----
Confidence            567777766443     566677778     9999999999999999998887653  56889999999999999     


Q ss_pred             CCCCCCCCCCC---CCCCCEEEEecC-----------------------------------------------CCCCccc
Q psy1959          88 SSTEEDDEEDV---LQVGDKVLALNK-----------------------------------------------ELLHGFS  117 (296)
Q Consensus        88 ~~~~~g~~v~~---~~~Gd~V~~~~~-----------------------------------------------~~~g~~~  117 (296)
                           |+++.+   +++||+|++...                                               ...|+|+
T Consensus        69 -----G~~~~~~~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  143 (367)
T cd08263          69 -----GPNVENPYGLSVGDRVVGSFIMPCGKCRYCARGKENLCEDFFAYNRLKGTLYDGTTRLFRLDGGPVYMYSMGGLA  143 (367)
T ss_pred             -----CCCCCCCCcCCCCCEEEEcCCCCCCCChHHhCcCcccCcCccccccccccccCCcccccccCCCccccccCCcce
Confidence                 998888   999999998310                                               0148999


Q ss_pred             ceEeeeCCceEECCCCCCHHHHhhhccHHHHHHHHHHHHcCCCCCcEEEEEcCCCcHHHHHHHHHHHhCCCE-EEEEeCC
Q psy1959         118 DQCVVHTNDVFKIPEKMTFEHAASLADSYSTAQIVFSRHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKAK-VIGVCNS  196 (296)
Q Consensus       118 ~~~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~~-Vi~~~~~  196 (296)
                      +|+.++.+.++++|+++++.++++++.++.+||.++.....+.++++++|+| +|++|++++++| +..|++ +++++.+
T Consensus       144 ~~~~~~~~~~~~~P~~is~~~aa~l~~~~~tA~~~l~~~~~~~~g~~VlI~g-~g~vG~~~~~la-k~~G~~~vi~~~~s  221 (367)
T cd08263         144 EYAVVPATALAPLPESLDYTESAVLGCAGFTAYGALKHAADVRPGETVAVIG-VGGVGSSAIQLA-KAFGASPIIAVDVR  221 (367)
T ss_pred             eEEEechhhEEECCCCCCHHHHhHhcchHHHHHHHHHhcccCCCCCEEEEEC-CcHHHHHHHHHH-HHcCCCeEEEEeCC
Confidence            9999999999999999999999999999999999998888889999999996 599999999999 678997 8888889


Q ss_pred             cchHHHHHhcCCcEEEEcCCchhHHHHHHHHhCCCcccEEEECCCCc-cHHHHHHHhhccCceEE
Q psy1959         197 EDKTDLIRQKGAWAALTFTNEKSLVNKVLEVSGGKYANVVFEAVGGE-DKTDLIRQKGAWAALTF  260 (296)
Q Consensus       197 ~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~g~d~vld~~g~~-~~~~~~~~lg~~~g~~~  260 (296)
                      +++.+.++++|++.+++.+. .++.+.+++..+++++|++||++++. ....+++++ +.+|++.
T Consensus       222 ~~~~~~~~~~g~~~v~~~~~-~~~~~~l~~~~~~~~~d~vld~vg~~~~~~~~~~~l-~~~G~~v  284 (367)
T cd08263         222 DEKLAKAKELGATHTVNAAK-EDAVAAIREITGGRGVDVVVEALGKPETFKLALDVV-RDGGRAV  284 (367)
T ss_pred             HHHHHHHHHhCCceEecCCc-ccHHHHHHHHhCCCCCCEEEEeCCCHHHHHHHHHHH-hcCCEEE
Confidence            99999999999988888876 67777888887777899999999996 899999999 7777664

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subu

>cd05282 ETR_like 2-enoyl thioester reductase-like

Probab=99.97  E-value=7.6e-29  Score=224.67  Aligned_cols=216  Identities=29%  Similarity=0.422  Sum_probs=193.2

Q ss_pred             CCCCCCCCCCCCCCcEEEEeeeeecChhhHHHHcCCCCCCCCCCCcCCCceeEEEEEEccCCCCCCCCCCCCCCCCCCCE
Q psy1959          25 KPTLPLVPGFEFSGTIIEKKMMTRINSSDLLLYNGSGDAKPTLPLVPGFEFSGTVIEVADTKSSSTEEDDEEDVLQVGDK  104 (296)
Q Consensus        25 ~~~p~~~~~~~~~~evlvkv~~~~i~~~D~~~~~g~~~~~~~~p~~~G~e~~G~V~~v~~~~~~~~~~g~~v~~~~~Gd~  104 (296)
                      .|.|.+.++     +|+||+.++++|+.|.....|.+.....+|.++|+|++|+|+++          |++++.+++||+
T Consensus        19 ~~~~~~~~~-----~v~i~v~~~~~~~~d~~~~~~~~~~~~~~~~~~g~e~~G~v~~~----------G~~v~~~~~Gd~   83 (323)
T cd05282          19 LPIPPPGPG-----EVLVRMLAAPINPSDLITISGAYGSRPPLPAVPGNEGVGVVVEV----------GSGVSGLLVGQR   83 (323)
T ss_pred             CCCCCCCCC-----eEEEEEEeccCCHHHHHHhcCcCCCCCCCCCcCCcceEEEEEEe----------CCCCCCCCCCCE
Confidence            456667788     99999999999999999988876544566889999999999999          999999999999


Q ss_pred             EEEecCCCCCcccceEeeeCCceEECCCCCCHHHHhhhccHHHHHHHHHHHHcCCCCCcEEEEEcCCCcHHHHHHHHHHH
Q psy1959         105 VLALNKELLHGFSDQCVVHTNDVFKIPEKMTFEHAASLADSYSTAQIVFSRHAKLKEKQTVLVTAAGGGLGLAAVDMATK  184 (296)
Q Consensus       105 V~~~~~~~~g~~~~~~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vlI~Ga~g~vG~aa~~la~~  184 (296)
                      |++...  .|+|++|+.++...++++|++++..+++.++..+.+||.++.....+.+|++++|+|++|++|++++++| +
T Consensus        84 V~~~~~--~g~~~~~~~~~~~~~~~lp~~~~~~~~a~~~~~~~ta~~~~~~~~~~~~~~~vlI~g~~~~vg~~~~~~a-~  160 (323)
T cd05282          84 VLPLGG--EGTWQEYVVAPADDLIPVPDSISDEQAAMLYINPLTAWLMLTEYLKLPPGDWVIQNAANSAVGRMLIQLA-K  160 (323)
T ss_pred             EEEeCC--CCcceeEEecCHHHeEECCCCCCHHHHHHHhccHHHHHHHHHHhccCCCCCEEEEcccccHHHHHHHHHH-H
Confidence            999872  3899999999999999999999999999999999999999988888999999999999999999999999 6


Q ss_pred             hCCCEEEEEeCCcchHHHHHhcCCcEEEEcCCchhHHHHHHHHhCCCcccEEEECCCCccHHHHHHHhhccCceEE
Q psy1959         185 IYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNKVLEVSGGKYANVVFEAVGGEDKTDLIRQKGAWAALTF  260 (296)
Q Consensus       185 ~~g~~Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~g~d~vld~~g~~~~~~~~~~lg~~~g~~~  260 (296)
                      .+|++++++.+++++.+.++++|++.++++.+ .++.+.+.+.++++++|+++||+|+.....+++++ +.+|++.
T Consensus       161 ~~g~~v~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~~~~~~~~~~d~vl~~~g~~~~~~~~~~l-~~~g~~v  234 (323)
T cd05282         161 LLGFKTINVVRRDEQVEELKALGADEVIDSSP-EDLAQRVKEATGGAGARLALDAVGGESATRLARSL-RPGGTLV  234 (323)
T ss_pred             HCCCeEEEEecChHHHHHHHhcCCCEEecccc-hhHHHHHHHHhcCCCceEEEECCCCHHHHHHHHhh-CCCCEEE
Confidence            78999999999999999999999988888876 56777888888888999999999998788899999 7777664

2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossman

>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family

Probab=99.97  E-value=8.7e-29  Score=226.35  Aligned_cols=225  Identities=25%  Similarity=0.395  Sum_probs=192.8

Q ss_pred             cceEEecCCCCC----CCCCCCCCCCCCCCcEEEEeeeeecChhhHHHHcCCCCCCCCCCCcCCCceeEEEEEEccCCCC
Q psy1959          13 SDLLLYNGSGDA----KPTLPLVPGFEFSGTIIEKKMMTRINSSDLLLYNGSGDAKPTLPLVPGFEFSGTVIEVADTKSS   88 (296)
Q Consensus        13 ~~~~~~~~~~~~----~~~p~~~~~~~~~~evlvkv~~~~i~~~D~~~~~g~~~~~~~~p~~~G~e~~G~V~~v~~~~~~   88 (296)
                      |++++++.++..    .|.|.+.++     ||+|||.++++|+.|+....|.++.. .+|.++|+|++|+|+++      
T Consensus         1 ~~a~~~~~~~~~~~~~~~~~~~~~~-----~v~v~v~~~~l~~~d~~~~~~~~~~~-~~~~~~g~e~~G~V~~~------   68 (337)
T cd08261           1 MKALVCEKPGRLEVVDIPEPVPGAG-----EVLVRVKRVGICGSDLHIYHGRNPFA-SYPRILGHELSGEVVEV------   68 (337)
T ss_pred             CeEEEEeCCCceEEEECCCCCCCCC-----eEEEEEEEEeEcccChHHHcCCCCcC-CCCcccccccEEEEEEe------
Confidence            466666665544    577778888     99999999999999999998876543 45788999999999999      


Q ss_pred             CCCCCCCCCCCCCCCEEEEecC-------------------------CCCCcccceEeeeCCceEECCCCCCHHHHhhhc
Q psy1959          89 STEEDDEEDVLQVGDKVLALNK-------------------------ELLHGFSDQCVVHTNDVFKIPEKMTFEHAASLA  143 (296)
Q Consensus        89 ~~~~g~~v~~~~~Gd~V~~~~~-------------------------~~~g~~~~~~~v~~~~~~~iP~~~~~~~aa~l~  143 (296)
                          |+++..+++||+|++...                         ...|+|++|+.++++ ++++|+++++++++.+ 
T Consensus        69 ----G~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~v~~~-~~~~p~~~~~~~aa~~-  142 (337)
T cd08261          69 ----GEGVAGLKVGDRVVVDPYISCGECYACRKGRPNCCENLQVLGVHRDGGFAEYIVVPAD-ALLVPEGLSLDQAALV-  142 (337)
T ss_pred             ----CCCCCCCCCCCEEEECCCCCCCCChhhhCcCcccCCCCCeeeecCCCcceeEEEechh-eEECCCCCCHHHhhhh-
Confidence                999999999999997310                         024899999999999 9999999999999866 


Q ss_pred             cHHHHHHHHHHHHcCCCCCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCcEEEEcCCchhHHHH
Q psy1959         144 DSYSTAQIVFSRHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNK  223 (296)
Q Consensus       144 ~~~~ta~~~l~~~~~~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  223 (296)
                      ..++++++++ ...++.+|++|+|+| +|.+|++++|+| +.+|++|+++.+++++.++++++|++.++++++ .++.+.
T Consensus       143 ~~~~~a~~~~-~~~~l~~g~~vLI~g-~g~vG~~a~~lA-~~~g~~v~~~~~s~~~~~~~~~~g~~~v~~~~~-~~~~~~  218 (337)
T cd08261         143 EPLAIGAHAV-RRAGVTAGDTVLVVG-AGPIGLGVIQVA-KARGARVIVVDIDDERLEFARELGADDTINVGD-EDVAAR  218 (337)
T ss_pred             chHHHHHHHH-HhcCCCCCCEEEEEC-CCHHHHHHHHHH-HHcCCeEEEECCCHHHHHHHHHhCCCEEecCcc-cCHHHH
Confidence            6888999888 788999999999997 489999999999 668999999999999999999999988888876 667788


Q ss_pred             HHHHhCCCcccEEEECCCC-ccHHHHHHHhhccCceEE
Q psy1959         224 VLEVSGGKYANVVFEAVGG-EDKTDLIRQKGAWAALTF  260 (296)
Q Consensus       224 i~~~~~~~g~d~vld~~g~-~~~~~~~~~lg~~~g~~~  260 (296)
                      +.+.++++++|+++|++|+ ..+..+++++ +.+|++.
T Consensus       219 l~~~~~~~~vd~vld~~g~~~~~~~~~~~l-~~~G~~i  255 (337)
T cd08261         219 LRELTDGEGADVVIDATGNPASMEEAVELV-AHGGRVV  255 (337)
T ss_pred             HHHHhCCCCCCEEEECCCCHHHHHHHHHHH-hcCCEEE
Confidence            8888877789999999987 6889999999 7777764

This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,

>cd08279 Zn_ADH_class_III Class III alcohol dehydrogenase

Probab=99.97  E-value=5.7e-29  Score=230.15  Aligned_cols=227  Identities=26%  Similarity=0.301  Sum_probs=195.8

Q ss_pred             cceEEecCCCCC-----CCCCCCCCCCCCCCcEEEEeeeeecChhhHHHHcCCCCCCCCCCCcCCCceeEEEEEEccCCC
Q psy1959          13 SDLLLYNGSGDA-----KPTLPLVPGFEFSGTIIEKKMMTRINSSDLLLYNGSGDAKPTLPLVPGFEFSGTVIEVADTKS   87 (296)
Q Consensus        13 ~~~~~~~~~~~~-----~~~p~~~~~~~~~~evlvkv~~~~i~~~D~~~~~g~~~~~~~~p~~~G~e~~G~V~~v~~~~~   87 (296)
                      |+++++..++..     .|.|.++++     +|+||+.++++|+.|...+.|.++  ..+|.++|+|++|+|+++     
T Consensus         1 m~a~~~~~~~~~~~~~~~~~p~~~~~-----~v~i~v~~~~i~~~d~~~~~g~~~--~~~~~~~g~e~~G~V~~v-----   68 (363)
T cd08279           1 MRAAVLHEVGKPLEIEEVELDDPGPG-----EVLVRIAAAGLCHSDLHVVTGDLP--APLPAVLGHEGAGVVEEV-----   68 (363)
T ss_pred             CeEEEEecCCCCceEEEeeCCCCCCC-----eEEEEEEEeecCcHHHHHhcCCCC--CCCCccccccceEEEEEe-----
Confidence            678888776444     567777888     999999999999999999888765  345789999999999999     


Q ss_pred             CCCCCCCCCCCCCCCCEEEEecC---------------------------------------------CCCCcccceEee
Q psy1959          88 SSTEEDDEEDVLQVGDKVLALNK---------------------------------------------ELLHGFSDQCVV  122 (296)
Q Consensus        88 ~~~~~g~~v~~~~~Gd~V~~~~~---------------------------------------------~~~g~~~~~~~v  122 (296)
                           |+++..+++||+|++...                                             ...|+|++|+.+
T Consensus        69 -----G~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  143 (363)
T cd08279          69 -----GPGVTGVKPGDHVVLSWIPACGTCRYCSRGQPNLCDLGAGILGGQLPDGTRRFTADGEPVGAMCGLGTFAEYTVV  143 (363)
T ss_pred             -----CCCccccCCCCEEEECCCCCCCCChhhcCCCcccCcccccccccccCCCcccccccCccccccccCccceeeEEe
Confidence                 999999999999998310                                             014899999999


Q ss_pred             eCCceEECCCCCCHHHHhhhccHHHHHHHHHHHHcCCCCCcEEEEEcCCCcHHHHHHHHHHHhCCCE-EEEEeCCcchHH
Q psy1959         123 HTNDVFKIPEKMTFEHAASLADSYSTAQIVFSRHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKAK-VIGVCNSEDKTD  201 (296)
Q Consensus       123 ~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~~-Vi~~~~~~~~~~  201 (296)
                      +.+.++++|+++++++++.++.++.+||.++....+++++++|+|+|+ |++|++++++| +..|++ |+++++++++.+
T Consensus       144 ~~~~~~~lp~~~~~~~aa~~~~~~~ta~~~~~~~~~~~~g~~vLI~g~-g~vG~a~i~la-k~~G~~~Vi~~~~~~~~~~  221 (363)
T cd08279         144 PEASVVKIDDDIPLDRAALLGCGVTTGVGAVVNTARVRPGDTVAVIGC-GGVGLNAIQGA-RIAGASRIIAVDPVPEKLE  221 (363)
T ss_pred             ccccEEECCCCCChHHeehhcchhHHHHHHHHhccCCCCCCEEEEECC-CHHHHHHHHHH-HHcCCCcEEEEcCCHHHHH
Confidence            999999999999999999999999999999888899999999999975 99999999999 668996 999999999999


Q ss_pred             HHHhcCCcEEEEcCCchhHHHHHHHHhCCCcccEEEECCCC-ccHHHHHHHhhccCceEE
Q psy1959         202 LIRQKGAWAALTFTNEKSLVNKVLEVSGGKYANVVFEAVGG-EDKTDLIRQKGAWAALTF  260 (296)
Q Consensus       202 ~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~g~d~vld~~g~-~~~~~~~~~lg~~~g~~~  260 (296)
                      .++++|++.+++.+. .++.+.+.+.+.++++|+++|++++ ..+..+++++ +.+|++.
T Consensus       222 ~~~~~g~~~vv~~~~-~~~~~~l~~~~~~~~vd~vld~~~~~~~~~~~~~~l-~~~G~~v  279 (363)
T cd08279         222 LARRFGATHTVNASE-DDAVEAVRDLTDGRGADYAFEAVGRAATIRQALAMT-RKGGTAV  279 (363)
T ss_pred             HHHHhCCeEEeCCCC-ccHHHHHHHHcCCCCCCEEEEcCCChHHHHHHHHHh-hcCCeEE
Confidence            999999988777765 5677778887767789999999996 6889999999 7777663

Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a me

>cd08289 MDR_yhfp_like Yhfp putative quinone oxidoreductases

Probab=99.97  E-value=9.1e-29  Score=224.75  Aligned_cols=243  Identities=21%  Similarity=0.285  Sum_probs=192.9

Q ss_pred             cceEEecCCCCC-------CCCCCCCCCCCCCCcEEEEeeeeecChhhHHHHcCCCCCCCCCCCcCCCceeEEEEEEccC
Q psy1959          13 SDLLLYNGSGDA-------KPTLPLVPGFEFSGTIIEKKMMTRINSSDLLLYNGSGDAKPTLPLVPGFEFSGTVIEVADT   85 (296)
Q Consensus        13 ~~~~~~~~~~~~-------~~~p~~~~~~~~~~evlvkv~~~~i~~~D~~~~~g~~~~~~~~p~~~G~e~~G~V~~v~~~   85 (296)
                      |+++++..+++.       .|.|.|.++     ||+||+.++++|++|.....+.......+|.++|||++|+|++.   
T Consensus         1 ~~a~~~~~~~~~~~~~~~~~~~p~~~~~-----ev~i~v~~~~i~~~d~~~~~~~~~~~~~~~~~~g~e~~G~V~~~---   72 (326)
T cd08289           1 FQALVVEKDEDDVSVSVKNLTLDDLPEG-----DVLIRVAYSSVNYKDGLASIPGGKIVKRYPFIPGIDLAGTVVES---   72 (326)
T ss_pred             CeeEEEeccCCcceeEEEEccCCCCCCC-----eEEEEEEEEecChHHhhhhcCCccccCCCCcCcccceeEEEEEc---
Confidence            566677666552       566777888     99999999999999987765432222346889999999999987   


Q ss_pred             CCCCCCCCCCCCCCCCCCEEEEecC----CCCCcccceEeeeCCceEECCCCCCHHHHhhhccHHHHHHHHHHHHcC---
Q psy1959          86 KSSSTEEDDEEDVLQVGDKVLALNK----ELLHGFSDQCVVHTNDVFKIPEKMTFEHAASLADSYSTAQIVFSRHAK---  158 (296)
Q Consensus        86 ~~~~~~~g~~v~~~~~Gd~V~~~~~----~~~g~~~~~~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~l~~~~~---  158 (296)
                             |  +..+++||+|++...    ...|+|++|++++.+.++++|+++++++++.++.++.+||.++.....   
T Consensus        73 -------~--~~~~~~Gd~V~~~~~~~~~~~~g~~~~~~~v~~~~~~~~p~~~~~~~a~~~~~~~~ta~~~l~~~~~~~~  143 (326)
T cd08289          73 -------N--DPRFKPGDEVIVTSYDLGVSHHGGYSEYARVPAEWVVPLPKGLTLKEAMILGTAGFTAALSIHRLEENGL  143 (326)
T ss_pred             -------C--CCCCCCCCEEEEcccccCCCCCCcceeEEEEcHHHeEECCCCCCHHHHhhhhhHHHHHHHHHHHHHhcCC
Confidence                   5  356999999998741    124999999999999999999999999999999999999988854433   


Q ss_pred             CCCCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCcEEEEcCCchhHHHHHHHHhCCCcccEEEE
Q psy1959         159 LKEKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNKVLEVSGGKYANVVFE  238 (296)
Q Consensus       159 ~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~g~d~vld  238 (296)
                      ..++++|+|+|++|++|++++++| +..|++|+++++++++.+.++++|++.+++.++ . ..+.+.+.. +.++|+++|
T Consensus       144 ~~~~~~vlI~g~~g~vg~~~~~~a-~~~g~~v~~~~~~~~~~~~~~~~g~~~v~~~~~-~-~~~~~~~~~-~~~~d~vld  219 (326)
T cd08289         144 TPEQGPVLVTGATGGVGSLAVSIL-AKLGYEVVASTGKADAADYLKKLGAKEVIPREE-L-QEESIKPLE-KQRWAGAVD  219 (326)
T ss_pred             CCCCCEEEEEcCCchHHHHHHHHH-HHCCCeEEEEecCHHHHHHHHHcCCCEEEcchh-H-HHHHHHhhc-cCCcCEEEE
Confidence            345789999999999999999999 678999999999999999999999988877654 2 344555553 568999999


Q ss_pred             CCCCccHHHHHHHhhccCceEEee-----------cccceeeeeEEeccc
Q psy1959         239 AVGGEDKTDLIRQKGAWAALTFTN-----------EKSLVNKVLEVSGGK  277 (296)
Q Consensus       239 ~~g~~~~~~~~~~lg~~~g~~~~~-----------~~~~~~k~~~i~g~~  277 (296)
                      ++|+..+..+++++ +.+|++..-           ...++.+++++.+..
T Consensus       220 ~~g~~~~~~~~~~l-~~~G~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~  268 (326)
T cd08289         220 PVGGKTLAYLLSTL-QYGGSVAVSGLTGGGEVETTVFPFILRGVNLLGID  268 (326)
T ss_pred             CCcHHHHHHHHHHh-hcCCEEEEEeecCCCCCCcchhhhhhccceEEEEE
Confidence            99998899999999 777766332           122336677777753

yhfp putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH

>cd05279 Zn_ADH1 Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases

Probab=99.97  E-value=8.5e-29  Score=229.25  Aligned_cols=225  Identities=22%  Similarity=0.273  Sum_probs=190.8

Q ss_pred             ceEEecCCCCC-----CCCCCCCCCCCCCCcEEEEeeeeecChhhHHHHcCCCCCCCCCCCcCCCceeEEEEEEccCCCC
Q psy1959          14 DLLLYNGSGDA-----KPTLPLVPGFEFSGTIIEKKMMTRINSSDLLLYNGSGDAKPTLPLVPGFEFSGTVIEVADTKSS   88 (296)
Q Consensus        14 ~~~~~~~~~~~-----~~~p~~~~~~~~~~evlvkv~~~~i~~~D~~~~~g~~~~~~~~p~~~G~e~~G~V~~v~~~~~~   88 (296)
                      +++++.+.+..     .|.|.+.++     +|+||+.++++|++|++.+.|.+.  ..+|.++|||++|+|+++      
T Consensus         2 ~a~~~~~~~~~~~~~~~~~p~~~~~-----~vlv~v~~~~i~~~d~~~~~g~~~--~~~~~i~g~e~~G~V~~v------   68 (365)
T cd05279           2 KAAVLWEKGKPLSIEEIEVAPPKAG-----EVRIKVVATGVCHTDLHVIDGKLP--TPLPVILGHEGAGIVESI------   68 (365)
T ss_pred             ceeEEecCCCCcEEEEeecCCCCCC-----eEEEEEEEeeecchhHHHhcCCCC--CCCCcccccceeEEEEEe------
Confidence            35555543322     577788888     999999999999999999988764  345789999999999999      


Q ss_pred             CCCCCCCCCCCCCCCEEEEecC--------------------------------------------C--CCCcccceEee
Q psy1959          89 STEEDDEEDVLQVGDKVLALNK--------------------------------------------E--LLHGFSDQCVV  122 (296)
Q Consensus        89 ~~~~g~~v~~~~~Gd~V~~~~~--------------------------------------------~--~~g~~~~~~~v  122 (296)
                          |+++..+++||+|++...                                            +  ..|+|++|+.+
T Consensus        69 ----G~~v~~~~~Gd~Vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~~a~~~~v  144 (365)
T cd05279          69 ----GPGVTTLKPGDKVIPLFGPQCGKCKQCLNPRPNLCSKSRGTNGRGLMSDGTSRFTCKGKPIHHFLGTSTFAEYTVV  144 (365)
T ss_pred             ----CCCcccCCCCCEEEEcCCCCCCCChhhcCCCcccCCCcccccccccccCCcceeeccCCccccccccccccceEEe
Confidence                999999999999997621                                            0  12689999999


Q ss_pred             eCCceEECCCCCCHHHHhhhccHHHHHHHHHHHHcCCCCCcEEEEEcCCCcHHHHHHHHHHHhCCCE-EEEEeCCcchHH
Q psy1959         123 HTNDVFKIPEKMTFEHAASLADSYSTAQIVFSRHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKAK-VIGVCNSEDKTD  201 (296)
Q Consensus       123 ~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~~-Vi~~~~~~~~~~  201 (296)
                      +.+.++++|+++++++++.+..++.+||+++...+++++|++|+|+|+ |++|++++++| +..|++ |+++++++++.+
T Consensus       145 ~~~~~~~lP~~~~~~~a~~~~~~~~ta~~al~~~~~~~~g~~vlI~g~-g~vG~~a~~~a-~~~G~~~v~~~~~~~~~~~  222 (365)
T cd05279         145 SEISLAKIDPDAPLEKVCLIGCGFSTGYGAAVNTAKVTPGSTCAVFGL-GGVGLSVIMGC-KAAGASRIIAVDINKDKFE  222 (365)
T ss_pred             cCCceEECCCCCCHHHhhHhccchhHHHHHHHhccCCCCCCEEEEECC-CHHHHHHHHHH-HHcCCCeEEEEeCCHHHHH
Confidence            999999999999999999999999999999878899999999999975 99999999999 668985 777777999999


Q ss_pred             HHHhcCCcEEEEcCCch--hHHHHHHHHhCCCcccEEEECCCC-ccHHHHHHHhhc-cCceEE
Q psy1959         202 LIRQKGAWAALTFTNEK--SLVNKVLEVSGGKYANVVFEAVGG-EDKTDLIRQKGA-WAALTF  260 (296)
Q Consensus       202 ~~~~~g~~~~~~~~~~~--~~~~~i~~~~~~~g~d~vld~~g~-~~~~~~~~~lg~-~~g~~~  260 (296)
                      .++++|++.+++..+ .  ++.+.+.+.++ +++|+++|++|. ..+..+++++ + .+|++.
T Consensus       223 ~~~~~g~~~~v~~~~-~~~~~~~~l~~~~~-~~~d~vid~~g~~~~~~~~~~~l-~~~~G~~v  282 (365)
T cd05279         223 KAKQLGATECINPRD-QDKPIVEVLTEMTD-GGVDYAFEVIGSADTLKQALDAT-RLGGGTSV  282 (365)
T ss_pred             HHHHhCCCeeccccc-ccchHHHHHHHHhC-CCCcEEEECCCCHHHHHHHHHHh-ccCCCEEE
Confidence            999999988887765 4  66677777774 689999999997 7889999999 6 777664

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall

>cd08258 Zn_ADH4 Alcohol dehydrogenases of the MDR family

Probab=99.97  E-value=1.1e-28  Score=223.12  Aligned_cols=244  Identities=28%  Similarity=0.413  Sum_probs=199.5

Q ss_pred             cceEEecCCCC--C----CCCCCCCCCCCCCCcEEEEeeeeecChhhHHHHcCCCCCCCCCCCcCCCceeEEEEEEccCC
Q psy1959          13 SDLLLYNGSGD--A----KPTLPLVPGFEFSGTIIEKKMMTRINSSDLLLYNGSGDAKPTLPLVPGFEFSGTVIEVADTK   86 (296)
Q Consensus        13 ~~~~~~~~~~~--~----~~~p~~~~~~~~~~evlvkv~~~~i~~~D~~~~~g~~~~~~~~p~~~G~e~~G~V~~v~~~~   86 (296)
                      |++++.++++.  .    +|.|.+.++     +|+||+.++++|+.|.....|.+.. ...|.++|+|++|+|+++    
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~p~~~~~-----~v~V~v~~~~l~~~d~~~~~g~~~~-~~~p~~~G~e~~G~V~~v----   70 (306)
T cd08258           1 MKALVKTGPGPGNVELREVPEPEPGPG-----EVLIKVAAAGICGSDLHIYKGDYDP-VETPVVLGHEFSGTIVEV----   70 (306)
T ss_pred             CeeEEEecCCCCceEEeecCCCCCCCC-----eEEEEEEEEEechhhHHHHcCCCCc-CCCCeeeccceEEEEEEE----
Confidence            45666665432  1    677778888     9999999999999999998887532 345789999999999999    


Q ss_pred             CCCCCCCCCCCCCCCCCEEEEecC--------------------------CCCCcccceEeeeCCceEECCCCCCHHHHh
Q psy1959          87 SSSTEEDDEEDVLQVGDKVLALNK--------------------------ELLHGFSDQCVVHTNDVFKIPEKMTFEHAA  140 (296)
Q Consensus        87 ~~~~~~g~~v~~~~~Gd~V~~~~~--------------------------~~~g~~~~~~~v~~~~~~~iP~~~~~~~aa  140 (296)
                            |+++..+++||+|++...                          ...|+|++|++++...++++|+++++++++
T Consensus        71 ------G~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~lp~~~~~~~aa  144 (306)
T cd08258          71 ------GPDVEGWKVGDRVVSETTFSTCGRCPYCRRGDYNLCPHRKGIGTQADGGFAEYVLVPEESLHELPENLSLEAAA  144 (306)
T ss_pred             ------CCCcCcCCCCCEEEEccCcCCCCCCcchhCcCcccCCCCceeeecCCCceEEEEEcchHHeEECcCCCCHHHHH
Confidence                  999999999999998642                          114899999999999999999999999887


Q ss_pred             hhccHHHHHHHHHHHHcCCCCCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeC--CcchHHHHHhcCCcEEEEcCCch
Q psy1959         141 SLADSYSTAQIVFSRHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCN--SEDKTDLIRQKGAWAALTFTNEK  218 (296)
Q Consensus       141 ~l~~~~~ta~~~l~~~~~~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~--~~~~~~~~~~~g~~~~~~~~~~~  218 (296)
                       ++.++.+||+++...++++++++|+|.| +|++|++++++| +..|++|+++..  ++++.+.++++|++.+ ++.. .
T Consensus       145 -~~~~~~~a~~~l~~~~~~~~g~~vlI~g-~g~~g~~~~~la-~~~G~~v~~~~~~~~~~~~~~~~~~g~~~~-~~~~-~  219 (306)
T cd08258         145 -LTEPLAVAVHAVAERSGIRPGDTVVVFG-PGPIGLLAAQVA-KLQGATVVVVGTEKDEVRLDVAKELGADAV-NGGE-E  219 (306)
T ss_pred             -hhchHHHHHHHHHHhcCCCCCCEEEEEC-CCHHHHHHHHHH-HHcCCEEEEECCCCCHHHHHHHHHhCCccc-CCCc-C
Confidence             7889999999998889999999999977 599999999999 678999887643  4457778888998776 6655 6


Q ss_pred             hHHHHHHHHhCCCcccEEEECCCC-ccHHHHHHHhhccCceEEe-----------ecccceeeeeEEecccc
Q psy1959         219 SLVNKVLEVSGGKYANVVFEAVGG-EDKTDLIRQKGAWAALTFT-----------NEKSLVNKVLEVSGGKY  278 (296)
Q Consensus       219 ~~~~~i~~~~~~~g~d~vld~~g~-~~~~~~~~~lg~~~g~~~~-----------~~~~~~~k~~~i~g~~~  278 (296)
                      ++.+.+.+...++++|++||++|+ ..+..+++++ +.+|++..           +...+++|+++|.|++.
T Consensus       220 ~~~~~l~~~~~~~~vd~vld~~g~~~~~~~~~~~l-~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~i~g~~~  290 (306)
T cd08258         220 DLAELVNEITDGDGADVVIECSGAVPALEQALELL-RKGGRIVQVGIFGPLAASIDVERIIQKELSVIGSRS  290 (306)
T ss_pred             CHHHHHHHHcCCCCCCEEEECCCChHHHHHHHHHh-hcCCEEEEEcccCCCCcccCHHHHhhcCcEEEEEec
Confidence            777888887777789999999986 6888999999 66666632           22346678888888773

This group shares the zinc coordination sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous

>cd08235 iditol_2_DH_like L-iditol 2-dehydrogenase

Probab=99.97  E-value=1.6e-28  Score=224.85  Aligned_cols=226  Identities=26%  Similarity=0.351  Sum_probs=191.5

Q ss_pred             cceEEecCCCCC----CCCCCCCCCCCCCCcEEEEeeeeecChhhHHHHcCCCCCCCCCCCcCCCceeEEEEEEccCCCC
Q psy1959          13 SDLLLYNGSGDA----KPTLPLVPGFEFSGTIIEKKMMTRINSSDLLLYNGSGDAKPTLPLVPGFEFSGTVIEVADTKSS   88 (296)
Q Consensus        13 ~~~~~~~~~~~~----~~~p~~~~~~~~~~evlvkv~~~~i~~~D~~~~~g~~~~~~~~p~~~G~e~~G~V~~v~~~~~~   88 (296)
                      |+++++.+++..    .+.|++.++     +|+||+.++++|+.|+....|.+. ....|.++|+|++|+|+++      
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~l~~~-----~v~i~v~~~~l~~~d~~~~~g~~~-~~~~~~~~g~~~~G~V~~~------   68 (343)
T cd08235           1 MKAAVLHGPNDVRLEEVPVPEPGPG-----EVLVKVRACGICGTDVKKIRGGHT-DLKPPRILGHEIAGEIVEV------   68 (343)
T ss_pred             CeEEEEecCCceEEEEccCCCCCCC-----eEEEEEEEeeeccccHHHHcCCCc-cCCCCcccccceEEEEEee------
Confidence            466666665544    566667778     999999999999999999888664 2345779999999999999      


Q ss_pred             CCCCCCCCCCCCCCCEEEEecC-------------------------CCCCcccceEeeeCCc-----eEECCCCCCHHH
Q psy1959          89 STEEDDEEDVLQVGDKVLALNK-------------------------ELLHGFSDQCVVHTND-----VFKIPEKMTFEH  138 (296)
Q Consensus        89 ~~~~g~~v~~~~~Gd~V~~~~~-------------------------~~~g~~~~~~~v~~~~-----~~~iP~~~~~~~  138 (296)
                          |+++..+++||+|+++..                         ...|+|++|+.++.+.     ++++|+++++.+
T Consensus        69 ----G~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~v~~~~~~~~~~~~lP~~~~~~~  144 (343)
T cd08235          69 ----GDGVTGFKVGDRVFVAPHVPCGECHYCLRGNENMCPNYKKFGNLYDGGFAEYVRVPAWAVKRGGVLKLPDNVSFEE  144 (343)
T ss_pred             ----CCCCCCCCCCCEEEEccCCCCCCChHHHCcCcccCCCcceeccCCCCcceeeEEecccccccccEEECCCCCCHHH
Confidence                999999999999998621                         0248999999999998     999999999999


Q ss_pred             HhhhccHHHHHHHHHHHHcCCCCCcEEEEEcCCCcHHHHHHHHHHHhCCCE-EEEEeCCcchHHHHHhcCCcEEEEcCCc
Q psy1959         139 AASLADSYSTAQIVFSRHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKAK-VIGVCNSEDKTDLIRQKGAWAALTFTNE  217 (296)
Q Consensus       139 aa~l~~~~~ta~~~l~~~~~~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~~-Vi~~~~~~~~~~~~~~~g~~~~~~~~~~  217 (296)
                      ++.+ .++.+||+++. ..++++|++|+|+| +|++|++++++| +..|++ |+++++++++.+.++++|.+.++++++ 
T Consensus       145 aa~~-~~~~~a~~~l~-~~~~~~g~~VlV~g-~g~vg~~~~~la-~~~g~~~v~~~~~s~~~~~~~~~~g~~~~~~~~~-  219 (343)
T cd08235         145 AALV-EPLACCINAQR-KAGIKPGDTVLVIG-AGPIGLLHAMLA-KASGARKVIVSDLNEFRLEFAKKLGADYTIDAAE-  219 (343)
T ss_pred             HHhh-hHHHHHHHHHH-hcCCCCCCEEEEEC-CCHHHHHHHHHH-HHcCCcEEEEECCCHHHHHHHHHhCCcEEecCCc-
Confidence            9865 88999999995 45899999999997 599999999999 668998 999998999999998899888888776 


Q ss_pred             hhHHHHHHHHhCCCcccEEEECCCC-ccHHHHHHHhhccCceEE
Q psy1959         218 KSLVNKVLEVSGGKYANVVFEAVGG-EDKTDLIRQKGAWAALTF  260 (296)
Q Consensus       218 ~~~~~~i~~~~~~~g~d~vld~~g~-~~~~~~~~~lg~~~g~~~  260 (296)
                      .++.+.+.+.+.++++|+++|++++ ..+..+++++ +.+|++.
T Consensus       220 ~~~~~~i~~~~~~~~vd~vld~~~~~~~~~~~~~~l-~~~g~~v  262 (343)
T cd08235         220 EDLVEKVRELTDGRGADVVIVATGSPEAQAQALELV-RKGGRIL  262 (343)
T ss_pred             cCHHHHHHHHhCCcCCCEEEECCCChHHHHHHHHHh-hcCCEEE
Confidence            6777888888877789999999997 5888999999 7777664

Putative L-iditol 2-dehydrogenase based on annotation of some members in this subgroup. L-iditol 2-dehydrogenase catalyzes the NAD+-dependent conversion of L-iditol to L-sorbose in fructose and mannose metabolism. This enzyme is related to sorbitol dehydrogenase, alcohol dehydrogenase, and other medium chain dehydrogenase/reductases. The zinc-dependent alcohol dehydrogenase (ADH-Zn)-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) to highlight its broad range of activities and to distinguish from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal GroES-like catalytic domain. The MDR group contains a host of activities, i

>cd08243 quinone_oxidoreductase_like_1 Quinone oxidoreductase (QOR)

Probab=99.97  E-value=1.8e-28  Score=221.51  Aligned_cols=211  Identities=21%  Similarity=0.310  Sum_probs=183.4

Q ss_pred             CCCCCCCCCCCCCcEEEEeeeeecChhhHHHHcCCCCCCCCCCCcCCCceeEEEEEEccCCCCCCCCCCCCCCCCCCCEE
Q psy1959          26 PTLPLVPGFEFSGTIIEKKMMTRINSSDLLLYNGSGDAKPTLPLVPGFEFSGTVIEVADTKSSSTEEDDEEDVLQVGDKV  105 (296)
Q Consensus        26 ~~p~~~~~~~~~~evlvkv~~~~i~~~D~~~~~g~~~~~~~~p~~~G~e~~G~V~~v~~~~~~~~~~g~~v~~~~~Gd~V  105 (296)
                      +.|.+.++     ||+||+.++++|+.|+....|..+. ...|.++|||++|+|+++          |.  ..+++||+|
T Consensus        21 ~~~~~~~~-----~v~v~v~~~~i~~~d~~~~~~~~~~-~~~~~~~g~e~~G~v~~v----------G~--~~~~~Gd~V   82 (320)
T cd08243          21 PIPEPKPG-----WVLIRVKAFGLNRSEIFTRQGHSPS-VKFPRVLGIEAVGEVEEA----------PG--GTFTPGQRV   82 (320)
T ss_pred             CCCCCCCC-----EEEEEEEEEecCHHHHHHhcCCCCC-CCCCccccceeEEEEEEe----------cC--CCCCCCCEE
Confidence            44557778     9999999999999999998886542 345789999999999999          74  469999999


Q ss_pred             EEecC----CCCCcccceEeeeCCceEECCCCCCHHHHhhhccHHHHHHHHHHHHcCCCCCcEEEEEcCCCcHHHHHHHH
Q psy1959         106 LALNK----ELLHGFSDQCVVHTNDVFKIPEKMTFEHAASLADSYSTAQIVFSRHAKLKEKQTVLVTAAGGGLGLAAVDM  181 (296)
Q Consensus       106 ~~~~~----~~~g~~~~~~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vlI~Ga~g~vG~aa~~l  181 (296)
                      +++..    +..|+|++|+.++...++++|+++++++++.++.++.+||.++.+..++++|++|+|+|++|++|++++++
T Consensus        83 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~vlV~ga~g~~g~~~~~~  162 (320)
T cd08243          83 ATAMGGMGRTFDGSYAEYTLVPNEQVYAIDSDLSWAELAALPETYYTAWGSLFRSLGLQPGDTLLIRGGTSSVGLAALKL  162 (320)
T ss_pred             EEecCCCCCCCCcccceEEEcCHHHcEeCCCCCCHHHHHhcchHHHHHHHHHHHhcCCCCCCEEEEEcCCChHHHHHHHH
Confidence            98753    12489999999999999999999999999999999999999998888899999999999999999999999


Q ss_pred             HHHhCCCEEEEEeCCcchHHHHHhcCCcEEEEcCCchhHHHHHHHHhCCCcccEEEECCCCccHHHHHHHhhccCceEE
Q psy1959         182 ATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNKVLEVSGGKYANVVFEAVGGEDKTDLIRQKGAWAALTF  260 (296)
Q Consensus       182 a~~~~g~~Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~g~d~vld~~g~~~~~~~~~~lg~~~g~~~  260 (296)
                      | +..|++|++++.++++.+.++++|++.++.. . .++.+.+.+.  ++++|+++|++|+..+..+++++ +.+|++.
T Consensus       163 a-~~~g~~v~~~~~~~~~~~~~~~~g~~~~~~~-~-~~~~~~i~~~--~~~~d~vl~~~~~~~~~~~~~~l-~~~g~~v  235 (320)
T cd08243         163 A-KALGATVTATTRSPERAALLKELGADEVVID-D-GAIAEQLRAA--PGGFDKVLELVGTATLKDSLRHL-RPGGIVC  235 (320)
T ss_pred             H-HHcCCEEEEEeCCHHHHHHHHhcCCcEEEec-C-ccHHHHHHHh--CCCceEEEECCChHHHHHHHHHh-ccCCEEE
Confidence            9 6789999999999999999999998776643 3 4566677776  56899999999998899999999 7777764

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.

>cd08260 Zn_ADH6 Alcohol dehydrogenases of the MDR family

Probab=99.97  E-value=2.1e-28  Score=224.52  Aligned_cols=228  Identities=27%  Similarity=0.385  Sum_probs=193.8

Q ss_pred             cceEEecCCCCC-----CCCCCCCCCCCCCCcEEEEeeeeecChhhHHHHcCCCCCCCCCCCcCCCceeEEEEEEccCCC
Q psy1959          13 SDLLLYNGSGDA-----KPTLPLVPGFEFSGTIIEKKMMTRINSSDLLLYNGSGDAKPTLPLVPGFEFSGTVIEVADTKS   87 (296)
Q Consensus        13 ~~~~~~~~~~~~-----~~~p~~~~~~~~~~evlvkv~~~~i~~~D~~~~~g~~~~~~~~p~~~G~e~~G~V~~v~~~~~   87 (296)
                      |+++++.+++..     .|.|.+.++     +|+||+.++++|+.|+....|..+. ..+|.++|+|++|+|+++     
T Consensus         1 m~a~~~~~~~~~~~~~~~~~~~~~~~-----~v~v~v~~~~i~~~d~~~~~g~~~~-~~~~~~~g~e~~G~V~~~-----   69 (345)
T cd08260           1 MRAAVYEEFGEPLEIREVPDPEPPPD-----GVVVEVEACGVCRSDWHGWQGHDPD-VTLPHVPGHEFAGVVVEV-----   69 (345)
T ss_pred             CeeEEEecCCCCcEEEEccCCCCCCC-----eEEEEEEEeeccHHHHHHhcCCCCC-CCCCeeeccceeEEEEEE-----
Confidence            567777665442     566777778     9999999999999999999887654 356889999999999999     


Q ss_pred             CCCCCCCCCCCCCCCCEEEEec-------------------------CCCCCcccceEeeeCC--ceEECCCCCCHHHHh
Q psy1959          88 SSTEEDDEEDVLQVGDKVLALN-------------------------KELLHGFSDQCVVHTN--DVFKIPEKMTFEHAA  140 (296)
Q Consensus        88 ~~~~~g~~v~~~~~Gd~V~~~~-------------------------~~~~g~~~~~~~v~~~--~~~~iP~~~~~~~aa  140 (296)
                           |+++..+++||+|++..                         ....|+|++|++++..  .++++|+++++++++
T Consensus        70 -----G~~~~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~~~iP~~~~~~~aa  144 (345)
T cd08260          70 -----GEDVSRWRVGDRVTVPFVLGCGTCPYCRAGDSNVCEHQVQPGFTHPGSFAEYVAVPRADVNLVRLPDDVDFVTAA  144 (345)
T ss_pred             -----CCCCccCCCCCEEEECCCCCCCCCccccCcCcccCCCCcccccCCCCcceeEEEcccccCceEECCCCCCHHHhh
Confidence                 99998999999998710                         0115899999999985  899999999999999


Q ss_pred             hhccHHHHHHHHHHHHcCCCCCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCcEEEEcCCchhH
Q psy1959         141 SLADSYSTAQIVFSRHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSL  220 (296)
Q Consensus       141 ~l~~~~~ta~~~l~~~~~~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  220 (296)
                      .++.++.+||+++.+.+++.++++++|+| .|++|++++++| +..|++|+++++++++.+.++++|++.+++.++..++
T Consensus       145 ~l~~~~~ta~~~l~~~~~~~~~~~vlV~g-~g~vg~~~~~~a-~~~G~~vi~~~~~~~~~~~~~~~g~~~~i~~~~~~~~  222 (345)
T cd08260         145 GLGCRFATAFRALVHQARVKPGEWVAVHG-CGGVGLSAVMIA-SALGARVIAVDIDDDKLELARELGAVATVNASEVEDV  222 (345)
T ss_pred             hhccchHHHHHHHHHccCCCCCCEEEEEC-CCHHHHHHHHHH-HHcCCeEEEEeCCHHHHHHHHHhCCCEEEccccchhH
Confidence            99999999999987888999999999999 599999999999 6789999999999999999999999888877542456


Q ss_pred             HHHHHHHhCCCcccEEEECCCC-ccHHHHHHHhhccCceEE
Q psy1959         221 VNKVLEVSGGKYANVVFEAVGG-EDKTDLIRQKGAWAALTF  260 (296)
Q Consensus       221 ~~~i~~~~~~~g~d~vld~~g~-~~~~~~~~~lg~~~g~~~  260 (296)
                      .+.+.....+ ++|++||++|+ ..+..+++++ +.+|++.
T Consensus       223 ~~~~~~~~~~-~~d~vi~~~g~~~~~~~~~~~l-~~~g~~i  261 (345)
T cd08260         223 AAAVRDLTGG-GAHVSVDALGIPETCRNSVASL-RKRGRHV  261 (345)
T ss_pred             HHHHHHHhCC-CCCEEEEcCCCHHHHHHHHHHh-hcCCEEE
Confidence            6777777766 89999999996 7888999999 7777664

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (ty

>cd08249 enoyl_reductase_like enoyl_reductase_like

Probab=99.97  E-value=9.2e-29  Score=226.69  Aligned_cols=226  Identities=23%  Similarity=0.324  Sum_probs=193.6

Q ss_pred             cceEEecCC--CCC----CCCCCCCCCCCCCCcEEEEeeeeecChhhHHHHcCCCCCCCCCCCcCCCceeEEEEEEccCC
Q psy1959          13 SDLLLYNGS--GDA----KPTLPLVPGFEFSGTIIEKKMMTRINSSDLLLYNGSGDAKPTLPLVPGFEFSGTVIEVADTK   86 (296)
Q Consensus        13 ~~~~~~~~~--~~~----~~~p~~~~~~~~~~evlvkv~~~~i~~~D~~~~~g~~~~~~~~p~~~G~e~~G~V~~v~~~~   86 (296)
                      |++++++.+  ++.    .|.|.|+++     ||+||+.++++|++|+....+.+  ...+|.++|+|++|+|+.+    
T Consensus         1 m~a~~~~~~~~~~~~~~~~~~p~~~~~-----ev~i~v~~~~i~~~d~~~~~~~~--~~~~~~~~g~e~~G~v~~v----   69 (339)
T cd08249           1 QKAAVLTGPGGGLLVVVDVPVPKPGPD-----EVLVKVKAVALNPVDWKHQDYGF--IPSYPAILGCDFAGTVVEV----   69 (339)
T ss_pred             CceEEeccCCCCcccccCCCCCCCCCC-----EEEEEEEEEEcCchheeeeeccc--ccCCCceeeeeeeEEEEEe----
Confidence            678888877  332    577778888     99999999999999998876654  1235778999999999999    


Q ss_pred             CCCCCCCCCCCCCCCCCEEEEecC------CCCCcccceEeeeCCceEECCCCCCHHHHhhhccHHHHHHHHHHHHcCC-
Q psy1959          87 SSSTEEDDEEDVLQVGDKVLALNK------ELLHGFSDQCVVHTNDVFKIPEKMTFEHAASLADSYSTAQIVFSRHAKL-  159 (296)
Q Consensus        87 ~~~~~~g~~v~~~~~Gd~V~~~~~------~~~g~~~~~~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~l~~~~~~-  159 (296)
                            |+++..+++||+|+++..      ..+|+|++|++++.+.++++|+++++++++.++.++.+||+++.+..++ 
T Consensus        70 ------G~~v~~~~~Gd~V~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~ip~~~~~~~~~~~~~~~~ta~~~l~~~~~~~  143 (339)
T cd08249          70 ------GSGVTRFKVGDRVAGFVHGGNPNDPRNGAFQEYVVADADLTAKIPDNISFEEAATLPVGLVTAALALFQKLGLP  143 (339)
T ss_pred             ------CCCcCcCCCCCEEEEEeccccCCCCCCCcccceEEechhheEECCCCCCHHHceecchHHHHHHHHHhccccCC
Confidence                  999989999999999853      1248999999999999999999999999999999999999998766554 


Q ss_pred             ---------CCCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCcEEEEcCCchhHHHHHHHHhCC
Q psy1959         160 ---------KEKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNKVLEVSGG  230 (296)
Q Consensus       160 ---------~~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~  230 (296)
                               +++++++|+|++|++|++++++| +..|++|+.+. ++++.+.++++|++.+++..+ .++.+.+++.++ 
T Consensus       144 ~~~~~~~~~~~~~~vlI~ga~g~vg~~~~~~a-~~~G~~v~~~~-~~~~~~~~~~~g~~~v~~~~~-~~~~~~l~~~~~-  219 (339)
T cd08249         144 LPPPKPSPASKGKPVLIWGGSSSVGTLAIQLA-KLAGYKVITTA-SPKNFDLVKSLGADAVFDYHD-PDVVEDIRAATG-  219 (339)
T ss_pred             CCCCCCCCCCCCCEEEEEcChhHHHHHHHHHH-HHcCCeEEEEE-CcccHHHHHhcCCCEEEECCC-chHHHHHHHhcC-
Confidence                     78999999999999999999999 67899999888 568999999999988888876 677777877765 


Q ss_pred             CcccEEEECCCC-ccHHHHHHHhhcc--CceEE
Q psy1959         231 KYANVVFEAVGG-EDKTDLIRQKGAW--AALTF  260 (296)
Q Consensus       231 ~g~d~vld~~g~-~~~~~~~~~lg~~--~g~~~  260 (296)
                      +++|+++|++|+ ..+..+++++ +.  +|.+.
T Consensus       220 ~~~d~vl~~~g~~~~~~~~~~~l-~~~~~g~~v  251 (339)
T cd08249         220 GKLRYALDCISTPESAQLCAEAL-GRSGGGKLV  251 (339)
T ss_pred             CCeeEEEEeeccchHHHHHHHHH-hccCCCEEE
Confidence            689999999998 8999999999 66  77663

Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol de

>cd08276 MDR7 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.97  E-value=2.8e-28  Score=221.79  Aligned_cols=247  Identities=25%  Similarity=0.314  Sum_probs=204.9

Q ss_pred             cceEEecCCCCC-------CCCCCCCCCCCCCCcEEEEeeeeecChhhHHHHcCCCCCCCCCCCcCCCceeEEEEEEccC
Q psy1959          13 SDLLLYNGSGDA-------KPTLPLVPGFEFSGTIIEKKMMTRINSSDLLLYNGSGDAKPTLPLVPGFEFSGTVIEVADT   85 (296)
Q Consensus        13 ~~~~~~~~~~~~-------~~~p~~~~~~~~~~evlvkv~~~~i~~~D~~~~~g~~~~~~~~p~~~G~e~~G~V~~v~~~   85 (296)
                      |++++++..+..       .+.|.+.++     |++|++.++++|++|+....|.++.....|.++|||++|+|+++   
T Consensus         1 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~-----~v~i~v~~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~v~~~---   72 (336)
T cd08276           1 MKAWRLSGGGGLDNLKLVEEPVPEPGPG-----EVLVRVHAVSLNYRDLLILNGRYPPPVKDPLIPLSDGAGEVVAV---   72 (336)
T ss_pred             CeEEEEeccCCCcceEEEeccCCCCCCC-----eEEEEEEEEecCHHHHHHhcCCCCCCCCCCcccccceeEEEEEe---
Confidence            566666643211       344556777     99999999999999999998876655557889999999999999   


Q ss_pred             CCCCCCCCCCCCCCCCCCEEEEecC-------------------CCCCcccceEeeeCCceEECCCCCCHHHHhhhccHH
Q psy1959          86 KSSSTEEDDEEDVLQVGDKVLALNK-------------------ELLHGFSDQCVVHTNDVFKIPEKMTFEHAASLADSY  146 (296)
Q Consensus        86 ~~~~~~~g~~v~~~~~Gd~V~~~~~-------------------~~~g~~~~~~~v~~~~~~~iP~~~~~~~aa~l~~~~  146 (296)
                             |+++.++++||+|++...                   +..|+|++|+.++.+.++++|+++++.+++.++.++
T Consensus        73 -------G~~~~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~~~~~~a~~~~~~~  145 (336)
T cd08276          73 -------GEGVTRFKVGDRVVPTFFPNWLDGPPTAEDEASALGGPIDGVLAEYVVLPEEGLVRAPDHLSFEEAATLPCAG  145 (336)
T ss_pred             -------CCCCcCCCCCCEEEEecccccccccccccccccccccccCceeeeEEEecHHHeEECCCCCCHHHhhhhhHHH
Confidence                   999989999999998651                   114889999999999999999999999999999999


Q ss_pred             HHHHHHHHHHcCCCCCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCcEEEEcCCchhHHHHHHH
Q psy1959         147 STAQIVFSRHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNKVLE  226 (296)
Q Consensus       147 ~ta~~~l~~~~~~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~  226 (296)
                      .+||+++...+.+++|++++|+| +|++|++++++| +..|++|++++.++++.+.++++|.+.+++.....++.+.+.+
T Consensus       146 ~~a~~~l~~~~~~~~g~~vli~g-~g~~g~~~~~~a-~~~G~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~  223 (336)
T cd08276         146 LTAWNALFGLGPLKPGDTVLVQG-TGGVSLFALQFA-KAAGARVIATSSSDEKLERAKALGADHVINYRTTPDWGEEVLK  223 (336)
T ss_pred             HHHHHHHHhhcCCCCCCEEEEEC-CcHHHHHHHHHH-HHcCCEEEEEeCCHHHHHHHHHcCCCEEEcCCcccCHHHHHHH
Confidence            99999998888999999999996 599999999999 6789999999999999999999998887776542456777888


Q ss_pred             HhCCCcccEEEECCCCccHHHHHHHhhccCceEEee-----------cccceeeeeEEeccc
Q psy1959         227 VSGGKYANVVFEAVGGEDKTDLIRQKGAWAALTFTN-----------EKSLVNKVLEVSGGK  277 (296)
Q Consensus       227 ~~~~~g~d~vld~~g~~~~~~~~~~lg~~~g~~~~~-----------~~~~~~k~~~i~g~~  277 (296)
                      .++++++|+++|+++......+++++ +.+|++...           ...++.+++.+.+..
T Consensus       224 ~~~~~~~d~~i~~~~~~~~~~~~~~l-~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~  284 (336)
T cd08276         224 LTGGRGVDHVVEVGGPGTLAQSIKAV-APGGVISLIGFLSGFEAPVLLLPLLTKGATLRGIA  284 (336)
T ss_pred             HcCCCCCcEEEECCChHHHHHHHHhh-cCCCEEEEEccCCCCccCcCHHHHhhcceEEEEEe
Confidence            88778999999999988899999999 777776431           223356677777654

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>cd08284 FDH_like_2 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 2

Probab=99.97  E-value=1.8e-28  Score=224.58  Aligned_cols=225  Identities=29%  Similarity=0.367  Sum_probs=190.1

Q ss_pred             cceEEecCCCCC----CCCCCCC-CCCCCCCcEEEEeeeeecChhhHHHHcCCCCCCCCCCCcCCCceeEEEEEEccCCC
Q psy1959          13 SDLLLYNGSGDA----KPTLPLV-PGFEFSGTIIEKKMMTRINSSDLLLYNGSGDAKPTLPLVPGFEFSGTVIEVADTKS   87 (296)
Q Consensus        13 ~~~~~~~~~~~~----~~~p~~~-~~~~~~~evlvkv~~~~i~~~D~~~~~g~~~~~~~~p~~~G~e~~G~V~~v~~~~~   87 (296)
                      |+++++..++..    .|.|.|. ++     ||+||+.++++|+.|+....|.+.  ..+|.++|+|++|+|+++     
T Consensus         1 ~~a~~~~~~~~~~~~~~~~p~~~~~~-----~v~i~v~~~~i~~~d~~~~~g~~~--~~~~~~~g~e~~G~V~~v-----   68 (344)
T cd08284           1 MKAVVFKGPGDVRVEEVPIPQIQDPT-----DAIVKVTAAAICGSDLHIYRGHIP--STPGFVLGHEFVGEVVEV-----   68 (344)
T ss_pred             CeeEEEecCCCceEEeccCCCCCCCC-----eEEEEEEEeeccccchhhhcCCCC--CCCCcccccceEEEEEee-----
Confidence            466677665544    5677764 78     999999999999999999888665  334788999999999999     


Q ss_pred             CCCCCCCCCCCCCCCCEEEEecC-----------------------------CCCCcccceEeeeCC--ceEECCCCCCH
Q psy1959          88 SSTEEDDEEDVLQVGDKVLALNK-----------------------------ELLHGFSDQCVVHTN--DVFKIPEKMTF  136 (296)
Q Consensus        88 ~~~~~g~~v~~~~~Gd~V~~~~~-----------------------------~~~g~~~~~~~v~~~--~~~~iP~~~~~  136 (296)
                           |+++..+++||+|++...                             ...|+|++|+.++.+  .++++|+++++
T Consensus        69 -----G~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~~~~p~~l~~  143 (344)
T cd08284          69 -----GPEVRTLKVGDRVVSPFTIACGECFYCRRGQSGRCAKGGLFGYAGSPNLDGAQAEYVRVPFADGTLLKLPDGLSD  143 (344)
T ss_pred             -----CCCccccCCCCEEEEcccCCCCCChHHhCcCcccCCCCccccccccCCCCCceeEEEEcccccCceEECCCCCCH
Confidence                 999999999999998531                             014889999999975  99999999999


Q ss_pred             HHHhhhccHHHHHHHHHHHHcCCCCCcEEEEEcCCCcHHHHHHHHHHHhCCC-EEEEEeCCcchHHHHHhcCCcEEEEcC
Q psy1959         137 EHAASLADSYSTAQIVFSRHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKA-KVIGVCNSEDKTDLIRQKGAWAALTFT  215 (296)
Q Consensus       137 ~~aa~l~~~~~ta~~~l~~~~~~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~-~Vi~~~~~~~~~~~~~~~g~~~~~~~~  215 (296)
                      ++++.++.++++||+++. ..++.++++|+|+| +|++|++++++| +.+|+ +|+++++++++.+.++++|+. .++.+
T Consensus       144 ~~a~~l~~~~~ta~~~~~-~~~~~~~~~vlI~g-~g~vg~~~~~~a-~~~g~~~v~~~~~~~~~~~~~~~~g~~-~~~~~  219 (344)
T cd08284         144 EAALLLGDILPTGYFGAK-RAQVRPGDTVAVIG-CGPVGLCAVLSA-QVLGAARVFAVDPVPERLERAAALGAE-PINFE  219 (344)
T ss_pred             HHhhhhcCchHHHHhhhH-hcCCccCCEEEEEC-CcHHHHHHHHHH-HHcCCceEEEEcCCHHHHHHHHHhCCe-EEecC
Confidence            999999999999999995 58899999999997 599999999999 67897 899998888899999999975 45555


Q ss_pred             CchhHHHHHHHHhCCCcccEEEECCCC-ccHHHHHHHhhccCceEE
Q psy1959         216 NEKSLVNKVLEVSGGKYANVVFEAVGG-EDKTDLIRQKGAWAALTF  260 (296)
Q Consensus       216 ~~~~~~~~i~~~~~~~g~d~vld~~g~-~~~~~~~~~lg~~~g~~~  260 (296)
                      . .++.+.+.+.++++++|++||++|+ +.+..+++++ +.+|++.
T Consensus       220 ~-~~~~~~l~~~~~~~~~dvvid~~~~~~~~~~~~~~l-~~~g~~v  263 (344)
T cd08284         220 D-AEPVERVREATEGRGADVVLEAVGGAAALDLAFDLV-RPGGVIS  263 (344)
T ss_pred             C-cCHHHHHHHHhCCCCCCEEEECCCCHHHHHHHHHhc-ccCCEEE
Confidence            5 5677788888877899999999997 6889999999 7777664

Glutathione-dependent formaldehyde dehydrogenases (FDHs) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. These tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typical

>PRK09422 ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional

Probab=99.97  E-value=1.8e-28  Score=224.08  Aligned_cols=226  Identities=24%  Similarity=0.283  Sum_probs=188.8

Q ss_pred             cceEEecCCCCC-----CCCCCCCCCCCCCCcEEEEeeeeecChhhHHHHcCCCCCCCCCCCcCCCceeEEEEEEccCCC
Q psy1959          13 SDLLLYNGSGDA-----KPTLPLVPGFEFSGTIIEKKMMTRINSSDLLLYNGSGDAKPTLPLVPGFEFSGTVIEVADTKS   87 (296)
Q Consensus        13 ~~~~~~~~~~~~-----~~~p~~~~~~~~~~evlvkv~~~~i~~~D~~~~~g~~~~~~~~p~~~G~e~~G~V~~v~~~~~   87 (296)
                      ||+++++++++.     .|.|.|.++     ||+|||.++++|++|+....|..+.  ..|.++|||++|+|+++     
T Consensus         1 mka~~~~~~~~~~~~~~~~~p~~~~~-----evlv~v~~~~i~~~d~~~~~g~~~~--~~~~~~g~e~~G~V~~~-----   68 (338)
T PRK09422          1 MKAAVVNKDHTGDVVVEKTLRPLKHG-----EALVKMEYCGVCHTDLHVANGDFGD--KTGRILGHEGIGIVKEV-----   68 (338)
T ss_pred             CeEEEecCCCCCceEEEecCCCCCCC-----eEEEEEEEEeechhHHHHHcCCCCC--CCCccCCcccceEEEEE-----
Confidence            677777765543     577778888     9999999999999999998886543  23678999999999999     


Q ss_pred             CCCCCCCCCCCCCCCCEEEEe-----------c---------------CCCCCcccceEeeeCCceEECCCCCCHHHHhh
Q psy1959          88 SSTEEDDEEDVLQVGDKVLAL-----------N---------------KELLHGFSDQCVVHTNDVFKIPEKMTFEHAAS  141 (296)
Q Consensus        88 ~~~~~g~~v~~~~~Gd~V~~~-----------~---------------~~~~g~~~~~~~v~~~~~~~iP~~~~~~~aa~  141 (296)
                           |+++..|++||+|++.           .               ....|+|++|+.++.+.++++|++++++++++
T Consensus        69 -----G~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~  143 (338)
T PRK09422         69 -----GPGVTSLKVGDRVSIAWFFEGCGHCEYCTTGRETLCRSVKNAGYTVDGGMAEQCIVTADYAVKVPEGLDPAQASS  143 (338)
T ss_pred             -----CCCCccCCCCCEEEEccCCCCCCCChhhcCCCcccCCCccccCccccCcceeEEEEchHHeEeCCCCCCHHHeeh
Confidence                 9999999999999862           1               01148999999999999999999999999999


Q ss_pred             hccHHHHHHHHHHHHcCCCCCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCcEEEEcCCchhHH
Q psy1959         142 LADSYSTAQIVFSRHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLV  221 (296)
Q Consensus       142 l~~~~~ta~~~l~~~~~~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  221 (296)
                      ++.++.+||+++ ..+++++|++|+|+| .|++|++++++|+...|++|+++++++++.+.++++|++.+++++...++.
T Consensus       144 l~~~~~ta~~~~-~~~~~~~g~~vlV~g-~g~vG~~~~~la~~~~g~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~  221 (338)
T PRK09422        144 ITCAGVTTYKAI-KVSGIKPGQWIAIYG-AGGLGNLALQYAKNVFNAKVIAVDINDDKLALAKEVGADLTINSKRVEDVA  221 (338)
T ss_pred             hhcchhHHHHHH-HhcCCCCCCEEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHcCCcEEecccccccHH
Confidence            999999999998 788999999999999 599999999999433599999999999999999999998887774324556


Q ss_pred             HHHHHHhCCCccc-EEEECCCCccHHHHHHHhhccCceEE
Q psy1959         222 NKVLEVSGGKYAN-VVFEAVGGEDKTDLIRQKGAWAALTF  260 (296)
Q Consensus       222 ~~i~~~~~~~g~d-~vld~~g~~~~~~~~~~lg~~~g~~~  260 (296)
                      +.+++..+  ++| +++++.+++.+..+++++ +.+|++.
T Consensus       222 ~~v~~~~~--~~d~vi~~~~~~~~~~~~~~~l-~~~G~~v  258 (338)
T PRK09422        222 KIIQEKTG--GAHAAVVTAVAKAAFNQAVDAV-RAGGRVV  258 (338)
T ss_pred             HHHHHhcC--CCcEEEEeCCCHHHHHHHHHhc-cCCCEEE
Confidence            66777664  688 455555557899999999 7777764

>cd08253 zeta_crystallin Zeta-crystallin with NADP-dependent quinone reductase activity (QOR)

Probab=99.97  E-value=3.8e-28  Score=218.98  Aligned_cols=218  Identities=27%  Similarity=0.387  Sum_probs=191.9

Q ss_pred             CCCCCCCCCCCCCCcEEEEeeeeecChhhHHHHcCCCCCCCCCCCcCCCceeEEEEEEccCCCCCCCCCCCCCCCCCCCE
Q psy1959          25 KPTLPLVPGFEFSGTIIEKKMMTRINSSDLLLYNGSGDAKPTLPLVPGFEFSGTVIEVADTKSSSTEEDDEEDVLQVGDK  104 (296)
Q Consensus        25 ~~~p~~~~~~~~~~evlvkv~~~~i~~~D~~~~~g~~~~~~~~p~~~G~e~~G~V~~v~~~~~~~~~~g~~v~~~~~Gd~  104 (296)
                      .|.|.+.++     +|+|++.++++|++|+....|.+......|.++|||++|+|+++          |+++..|++||+
T Consensus        20 ~~~~~l~~~-----~v~i~v~~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~v~~~----------g~~~~~~~~Gd~   84 (325)
T cd08253          20 LPVPTPGPG-----EVLVRVHASGVNPVDTYIRAGAYPGLPPLPYVPGSDGAGVVEAV----------GEGVDGLKVGDR   84 (325)
T ss_pred             cCCCCCCCC-----EEEEEEEEEecChhHhhhccCCCCCCCCCCeecccceEEEEEee----------CCCCCCCCCCCE
Confidence            456666777     99999999999999999988876544567889999999999999          999999999999


Q ss_pred             EEEecCC---CCCcccceEeeeCCceEECCCCCCHHHHhhhccHHHHHHHHHHHHcCCCCCcEEEEEcCCCcHHHHHHHH
Q psy1959         105 VLALNKE---LLHGFSDQCVVHTNDVFKIPEKMTFEHAASLADSYSTAQIVFSRHAKLKEKQTVLVTAAGGGLGLAAVDM  181 (296)
Q Consensus       105 V~~~~~~---~~g~~~~~~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vlI~Ga~g~vG~aa~~l  181 (296)
                      |++....   ..|++++|+.++.+.++++|+++++.++++++.++.+||+++....++.+|++++|+|+++++|++++++
T Consensus        85 v~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~~~~~~a~~~l~~~~~~~~g~~vlI~g~~~~~g~~~~~~  164 (325)
T cd08253          85 VWLTNLGWGRRQGTAAEYVVVPADQLVPLPDGVSFEQGAALGIPALTAYRALFHRAGAKAGETVLVHGGSGAVGHAAVQL  164 (325)
T ss_pred             EEEeccccCCCCcceeeEEEecHHHcEeCCCCCCHHHHhhhhhHHHHHHHHHHHHhCCCCCCEEEEEcCCchHHHHHHHH
Confidence            9998621   1489999999999999999999999999999999999999998889999999999999999999999999


Q ss_pred             HHHhCCCEEEEEeCCcchHHHHHhcCCcEEEEcCCchhHHHHHHHHhCCCcccEEEECCCCccHHHHHHHhhccCceEE
Q psy1959         182 ATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNKVLEVSGGKYANVVFEAVGGEDKTDLIRQKGAWAALTF  260 (296)
Q Consensus       182 a~~~~g~~Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~g~d~vld~~g~~~~~~~~~~lg~~~g~~~  260 (296)
                      + +..|++|+++++++++.+.++++|++..++... .++.+.+.+.+.++++|+++++.|+......++++ +.+|.+.
T Consensus       165 a-~~~g~~v~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~~~~~~~~~~d~vi~~~~~~~~~~~~~~l-~~~g~~v  240 (325)
T cd08253         165 A-RWAGARVIATASSAEGAELVRQAGADAVFNYRA-EDLADRILAATAGQGVDVIIEVLANVNLAKDLDVL-APGGRIV  240 (325)
T ss_pred             H-HHcCCEEEEEeCCHHHHHHHHHcCCCEEEeCCC-cCHHHHHHHHcCCCceEEEEECCchHHHHHHHHhh-CCCCEEE
Confidence            9 668999999999999999999999888887765 56777777777677899999999998888899999 7667664

Zeta-crystallin is a eye lens protein with NADP-dependent quinone reductase activity (QOR). It has been cited as a structural component in mammalian eyes, but also has homology to quinone reductases in unrelated species. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts

>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases

Probab=99.97  E-value=2.8e-28  Score=223.43  Aligned_cols=224  Identities=32%  Similarity=0.407  Sum_probs=190.8

Q ss_pred             cceEEecCCCCC----CCCCCCCCCCCCCCcEEEEeeeeecChhhHHHHcCCCCCCCCCCCcCCCceeEEEEEEccCCCC
Q psy1959          13 SDLLLYNGSGDA----KPTLPLVPGFEFSGTIIEKKMMTRINSSDLLLYNGSGDAKPTLPLVPGFEFSGTVIEVADTKSS   88 (296)
Q Consensus        13 ~~~~~~~~~~~~----~~~p~~~~~~~~~~evlvkv~~~~i~~~D~~~~~g~~~~~~~~p~~~G~e~~G~V~~v~~~~~~   88 (296)
                      |+++++++.++.    .|.|++.++     ||+||+.++++|+.|+..+.|.+.  ...|.++|+|++|+|+++      
T Consensus         1 ~~a~~~~~~~~l~~~~~~~~~l~~~-----~v~v~v~~~~~n~~d~~~~~~~~~--~~~~~~~g~~~~G~V~~~------   67 (343)
T cd08236           1 MKALVLTGPGDLRYEDIPKPEPGPG-----EVLVKVKACGICGSDIPRYLGTGA--YHPPLVLGHEFSGTVEEV------   67 (343)
T ss_pred             CeeEEEecCCceeEEecCCCCCCCC-----eEEEEEEEEEECccchHhhcCCCC--CCCCcccCcceEEEEEEE------
Confidence            566677665544    567778888     999999999999999998887652  345789999999999999      


Q ss_pred             CCCCCCCCCCCCCCCEEEEecC-------------------------CCCCcccceEeeeCCceEECCCCCCHHHHhhhc
Q psy1959          89 STEEDDEEDVLQVGDKVLALNK-------------------------ELLHGFSDQCVVHTNDVFKIPEKMTFEHAASLA  143 (296)
Q Consensus        89 ~~~~g~~v~~~~~Gd~V~~~~~-------------------------~~~g~~~~~~~v~~~~~~~iP~~~~~~~aa~l~  143 (296)
                          |+++..|++||+|+++..                         ...|+|++|+.++++.++++|+++++++++.+ 
T Consensus        68 ----g~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lP~~~~~~~aa~~-  142 (343)
T cd08236          68 ----GSGVDDLAVGDRVAVNPLLPCGKCEYCKKGEYSLCSNYDYIGSRRDGAFAEYVSVPARNLIKIPDHVDYEEAAMI-  142 (343)
T ss_pred             ----CCCCCcCCCCCEEEEcCCCCCCCChhHHCcChhhCCCcceEecccCCcccceEEechHHeEECcCCCCHHHHHhc-
Confidence                999999999999998621                         12489999999999999999999999999877 


Q ss_pred             cHHHHHHHHHHHHcCCCCCcEEEEEcCCCcHHHHHHHHHHHhCCCE-EEEEeCCcchHHHHHhcCCcEEEEcCCchhHHH
Q psy1959         144 DSYSTAQIVFSRHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKAK-VIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVN  222 (296)
Q Consensus       144 ~~~~ta~~~l~~~~~~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~~-Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  222 (296)
                      .++.+||.++. ...++++++|+|+|+ |.+|++++|+| +.+|++ |+++++++++.++++++|++.++++++ .. .+
T Consensus       143 ~~~~ta~~~l~-~~~~~~~~~vlI~g~-g~~g~~~~~lA-~~~G~~~v~~~~~~~~~~~~l~~~g~~~~~~~~~-~~-~~  217 (343)
T cd08236         143 EPAAVALHAVR-LAGITLGDTVVVIGA-GTIGLLAIQWL-KILGAKRVIAVDIDDEKLAVARELGADDTINPKE-ED-VE  217 (343)
T ss_pred             chHHHHHHHHH-hcCCCCCCEEEEECC-CHHHHHHHHHH-HHcCCCEEEEEcCCHHHHHHHHHcCCCEEecCcc-cc-HH
Confidence            68899999995 788999999999974 99999999999 678997 999999999999999999988888766 45 66


Q ss_pred             HHHHHhCCCcccEEEECCCC-ccHHHHHHHhhccCceEE
Q psy1959         223 KVLEVSGGKYANVVFEAVGG-EDKTDLIRQKGAWAALTF  260 (296)
Q Consensus       223 ~i~~~~~~~g~d~vld~~g~-~~~~~~~~~lg~~~g~~~  260 (296)
                      .+....+++++|+++||+|+ ..+..+++++ +.+|++.
T Consensus       218 ~~~~~~~~~~~d~vld~~g~~~~~~~~~~~l-~~~G~~v  255 (343)
T cd08236         218 KVRELTEGRGADLVIEAAGSPATIEQALALA-RPGGKVV  255 (343)
T ss_pred             HHHHHhCCCCCCEEEECCCCHHHHHHHHHHh-hcCCEEE
Confidence            77777777789999999987 6889999999 7777764

This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast

>cd05276 p53_inducible_oxidoreductase PIG3 p53-inducible quinone oxidoreductase

Probab=99.97  E-value=3.7e-28  Score=218.62  Aligned_cols=245  Identities=27%  Similarity=0.401  Sum_probs=204.4

Q ss_pred             cceEEecCCCCC-------CCCCCCCCCCCCCCcEEEEeeeeecChhhHHHHcCCCCCCCCCCCcCCCceeEEEEEEccC
Q psy1959          13 SDLLLYNGSGDA-------KPTLPLVPGFEFSGTIIEKKMMTRINSSDLLLYNGSGDAKPTLPLVPGFEFSGTVIEVADT   85 (296)
Q Consensus        13 ~~~~~~~~~~~~-------~~~p~~~~~~~~~~evlvkv~~~~i~~~D~~~~~g~~~~~~~~p~~~G~e~~G~V~~v~~~   85 (296)
                      ||++++.+++..       .+.|.+.++     +|+||+.++++|+.|+....|.+.....+|.++|||++|+|+++   
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~v~v~v~~~~i~~~d~~~~~~~~~~~~~~~~~~g~e~~G~v~~v---   72 (323)
T cd05276           1 MKAIVIKEPGGPEVLELGEVPKPAPGPG-----EVLIRVAAAGVNRADLLQRQGLYPPPPGASDILGLEVAGVVVAV---   72 (323)
T ss_pred             CeEEEEecCCCcccceEEecCCCCCCCC-----EEEEEEEEeecCHHHHHHhCCCCCCCCCCCCcccceeEEEEEee---
Confidence            566666654332       334456677     99999999999999999988876555567889999999999999   


Q ss_pred             CCCCCCCCCCCCCCCCCCEEEEecCCCCCcccceEeeeCCceEECCCCCCHHHHhhhccHHHHHHHHHHHHcCCCCCcEE
Q psy1959          86 KSSSTEEDDEEDVLQVGDKVLALNKELLHGFSDQCVVHTNDVFKIPEKMTFEHAASLADSYSTAQIVFSRHAKLKEKQTV  165 (296)
Q Consensus        86 ~~~~~~~g~~v~~~~~Gd~V~~~~~~~~g~~~~~~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~v  165 (296)
                             |+++..+++||+|+++..  +|+|++|+.++.+.++++|+++++.+++.++.++.++|.++.+...+.+++++
T Consensus        73 -------g~~~~~~~~Gd~V~~~~~--~g~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~a~~~~~~~~~~~~~~~v  143 (323)
T cd05276          73 -------GPGVTGWKVGDRVCALLA--GGGYAEYVVVPAGQLLPVPEGLSLVEAAALPEVFFTAWQNLFQLGGLKAGETV  143 (323)
T ss_pred             -------CCCCCCCCCCCEEEEecC--CCceeEEEEcCHHHhccCCCCCCHHHHhhchhHHHHHHHHHHHhcCCCCCCEE
Confidence                   998888999999999854  58999999999999999999999999999999999999998888899999999


Q ss_pred             EEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCcEEEEcCCchhHHHHHHHHhCCCcccEEEECCCCccH
Q psy1959         166 LVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNKVLEVSGGKYANVVFEAVGGEDK  245 (296)
Q Consensus       166 lI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~g~d~vld~~g~~~~  245 (296)
                      +|+|++|++|+++++++ +..|++|+++++++++.+.++++|++..++... .++.+.+.+...++++|+++++.|+...
T Consensus       144 lv~g~~~~ig~~~~~~~-~~~g~~v~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~~~~~~~~~~d~vi~~~g~~~~  221 (323)
T cd05276         144 LIHGGASGVGTAAIQLA-KALGARVIATAGSEEKLEACRALGADVAINYRT-EDFAEEVKEATGGRGVDVILDMVGGDYL  221 (323)
T ss_pred             EEEcCcChHHHHHHHHH-HHcCCEEEEEcCCHHHHHHHHHcCCCEEEeCCc-hhHHHHHHHHhCCCCeEEEEECCchHHH
Confidence            99999999999999999 678999999999999999998899877777765 5677777777766789999999999778


Q ss_pred             HHHHHHhhccCceEEee-----------cccceeeeeEEeccc
Q psy1959         246 TDLIRQKGAWAALTFTN-----------EKSLVNKVLEVSGGK  277 (296)
Q Consensus       246 ~~~~~~lg~~~g~~~~~-----------~~~~~~k~~~i~g~~  277 (296)
                      ..+++++ ..+|.+...           ...++.+++++.++.
T Consensus       222 ~~~~~~~-~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  263 (323)
T cd05276         222 ARNLRAL-APDGRLVLIGLLGGAKAELDLAPLLRKRLTLTGST  263 (323)
T ss_pred             HHHHHhh-ccCCEEEEEecCCCCCCCCchHHHHHhCCeEEEee
Confidence            8899999 666666321           112235667777665

PIG3 p53-inducible quinone oxidoreductase, a medium chain dehydrogenase/reductase family member, acts in the apoptotic pathway. PIG3 reduces ortho-quinones, but its apoptotic activity has been attributed to oxidative stress generation, since overexpression of PIG3 accumulates reactive oxygen species. PIG3 resembles the MDR family member quinone reductases, which catalyze the reduction of quinone to hydroxyquinone. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding

>cd08282 PFDH_like Pseudomonas putida aldehyde-dismutating formaldehyde dehydrogenase (PFDH)

Probab=99.97  E-value=3.4e-28  Score=226.03  Aligned_cols=223  Identities=26%  Similarity=0.321  Sum_probs=186.9

Q ss_pred             cceEEecCCCCC----CCCCCC-CCCCCCCCcEEEEeeeeecChhhHHHHcCCCCCCCCCCCcCCCceeEEEEEEccCCC
Q psy1959          13 SDLLLYNGSGDA----KPTLPL-VPGFEFSGTIIEKKMMTRINSSDLLLYNGSGDAKPTLPLVPGFEFSGTVIEVADTKS   87 (296)
Q Consensus        13 ~~~~~~~~~~~~----~~~p~~-~~~~~~~~evlvkv~~~~i~~~D~~~~~g~~~~~~~~p~~~G~e~~G~V~~v~~~~~   87 (296)
                      |+++++.+++..    .|.|.+ .++     ||+||+.++++|++|+..+.|.+.  ..+|.++|||++|+|+++     
T Consensus         1 m~~~~~~~~~~~~~~~~~~p~~~~~~-----evlv~v~a~~i~~~D~~~~~g~~~--~~~p~~~g~e~~G~V~~v-----   68 (375)
T cd08282           1 MKAVVYGGPGNVAVEDVPDPKIEHPT-----DAIVRITTTAICGSDLHMYRGRTG--AEPGLVLGHEAMGEVEEV-----   68 (375)
T ss_pred             CceEEEecCCceeEEeCCCCCCCCCC-----eEEEEEEEEeeCHHHHHHHcCCCC--CCCCceeccccEEEEEEe-----
Confidence            466777766544    566664 578     999999999999999999988765  346889999999999999     


Q ss_pred             CCCCCCCCCCCCCCCCEEEEecC-----------------------------------CCCCcccceEeeeCC--ceEEC
Q psy1959          88 SSTEEDDEEDVLQVGDKVLALNK-----------------------------------ELLHGFSDQCVVHTN--DVFKI  130 (296)
Q Consensus        88 ~~~~~g~~v~~~~~Gd~V~~~~~-----------------------------------~~~g~~~~~~~v~~~--~~~~i  130 (296)
                           |+++..+++||+|++...                                   ...|+|++|++++..  .++++
T Consensus        69 -----G~~v~~~~~Gd~V~~~~~~~~g~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~a~y~~v~~~~~~~~~l  143 (375)
T cd08282          69 -----GSAVESLKVGDRVVVPFNVACGRCRNCKRGLTGVCLTVNPGRAGGAYGYVDMGPYGGGQAEYLRVPYADFNLLKL  143 (375)
T ss_pred             -----CCCCCcCCCCCEEEEeCCCCCCCCHHHHCcCcccCCCCCcccccccccccccCCCCCeeeeEEEeecccCcEEEC
Confidence                 999989999999987211                                   013889999999976  89999


Q ss_pred             CCCCCHH---HHhhhccHHHHHHHHHHHHcCCCCCcEEEEEcCCCcHHHHHHHHHHHhCCC-EEEEEeCCcchHHHHHhc
Q psy1959         131 PEKMTFE---HAASLADSYSTAQIVFSRHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKA-KVIGVCNSEDKTDLIRQK  206 (296)
Q Consensus       131 P~~~~~~---~aa~l~~~~~ta~~~l~~~~~~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~-~Vi~~~~~~~~~~~~~~~  206 (296)
                      |++++++   .++.++.++++||+++ ..+++++|++|+|.|+ |++|++++|+| +..|+ +|+++++++++.+.++++
T Consensus       144 P~~~~~~~~~~~a~~~~~~~ta~~a~-~~~~~~~g~~vlI~g~-g~vg~~~~~~a-~~~G~~~vi~~~~~~~~~~~~~~~  220 (375)
T cd08282         144 PDRDGAKEKDDYLMLSDIFPTGWHGL-ELAGVQPGDTVAVFGA-GPVGLMAAYSA-ILRGASRVYVVDHVPERLDLAESI  220 (375)
T ss_pred             CCCCChhhhhheeeecchHHHHHHHH-HhcCCCCCCEEEEECC-CHHHHHHHHHH-HHcCCCEEEEECCCHHHHHHHHHc
Confidence            9999998   4677888999999999 7889999999999875 99999999999 67897 899999999999999999


Q ss_pred             CCcEEEEcCCchhHHHHHHHHhCCCcccEEEECCCCc------------cHHHHHHHhhccCceE
Q psy1959         207 GAWAALTFTNEKSLVNKVLEVSGGKYANVVFEAVGGE------------DKTDLIRQKGAWAALT  259 (296)
Q Consensus       207 g~~~~~~~~~~~~~~~~i~~~~~~~g~d~vld~~g~~------------~~~~~~~~lg~~~g~~  259 (296)
                      |+ ..+++++ .++.+.+.+.++ +++|+++||+|+.            .+..+++++ +++|++
T Consensus       221 g~-~~v~~~~-~~~~~~i~~~~~-~~~d~v~d~~g~~~~~~~~~~~~~~~~~~~~~~l-~~~g~~  281 (375)
T cd08282         221 GA-IPIDFSD-GDPVEQILGLEP-GGVDRAVDCVGYEARDRGGEAQPNLVLNQLIRVT-RPGGGI  281 (375)
T ss_pred             CC-eEeccCc-ccHHHHHHHhhC-CCCCEEEECCCCcccccccccchHHHHHHHHHHh-hcCcEE
Confidence            98 4456655 567777887776 6899999999985            378899999 777666

Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. PFDH converts 2 molecules of aldehydes to corresponding carboxylic acid and alcohol. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fo

>cd08251 polyketide_synthase polyketide synthase

Probab=99.97  E-value=5.6e-28  Score=216.18  Aligned_cols=215  Identities=27%  Similarity=0.428  Sum_probs=192.7

Q ss_pred             CCCCCCCCCCCCcEEEEeeeeecChhhHHHHcCCCCCCCCCCCcCCCceeEEEEEEccCCCCCCCCCCCCCCCCCCCEEE
Q psy1959          27 TLPLVPGFEFSGTIIEKKMMTRINSSDLLLYNGSGDAKPTLPLVPGFEFSGTVIEVADTKSSSTEEDDEEDVLQVGDKVL  106 (296)
Q Consensus        27 ~p~~~~~~~~~~evlvkv~~~~i~~~D~~~~~g~~~~~~~~p~~~G~e~~G~V~~v~~~~~~~~~~g~~v~~~~~Gd~V~  106 (296)
                      .|.+.++     +++||+.++++|+.|+....|.+.....+|.++|+|++|+|+++          |+++.++++||+|+
T Consensus         2 ~p~~~~~-----~v~v~v~~~~i~~~d~~~~~~~~~~~~~~~~~~g~e~~G~v~~~----------G~~v~~~~~Gd~V~   66 (303)
T cd08251           2 VAPPGPG-----EVRIQVRAFSLNFGDLLCVRGLYPTMPPYPFTPGFEASGVVRAV----------GPHVTRLAVGDEVI   66 (303)
T ss_pred             CCCCCCC-----EEEEEEEEeecChHHHHHHCCCCCCCCCCCCCcCceeeEEEEEE----------CCCCCCCCCCCEEE
Confidence            4567788     99999999999999999998876555567889999999999999          99999999999999


Q ss_pred             EecCCCCCcccceEeeeCCceEECCCCCCHHHHhhhccHHHHHHHHHHHHcCCCCCcEEEEEcCCCcHHHHHHHHHHHhC
Q psy1959         107 ALNKELLHGFSDQCVVHTNDVFKIPEKMTFEHAASLADSYSTAQIVFSRHAKLKEKQTVLVTAAGGGLGLAAVDMATKIY  186 (296)
Q Consensus       107 ~~~~~~~g~~~~~~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vlI~Ga~g~vG~aa~~la~~~~  186 (296)
                      ++.....|+|++|+.++.+.++++|++++.++++.++.++.+||.++ +...+++|++++|++++|++|+++++++ +.+
T Consensus        67 ~~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l-~~~~~~~g~~vli~~~~~~~g~~~~~~a-~~~  144 (303)
T cd08251          67 AGTGESMGGHATLVTVPEDQVVRKPASLSFEEACALPVVFLTVIDAF-ARAGLAKGEHILIQTATGGTGLMAVQLA-RLK  144 (303)
T ss_pred             EecCCCCcceeeEEEccHHHeEECCCCCCHHHHHHhHHHHHHHHHHH-HhcCCCCCCEEEEecCCcHHHHHHHHHH-HHc
Confidence            87543458999999999999999999999999999999999999998 5789999999999999999999999999 678


Q ss_pred             CCEEEEEeCCcchHHHHHhcCCcEEEEcCCchhHHHHHHHHhCCCcccEEEECCCCccHHHHHHHhhccCceEE
Q psy1959         187 KAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNKVLEVSGGKYANVVFEAVGGEDKTDLIRQKGAWAALTF  260 (296)
Q Consensus       187 g~~Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~g~d~vld~~g~~~~~~~~~~lg~~~g~~~  260 (296)
                      |++|+++++++++.+.++++|++.+++... .++.+.+...+.++++|+++|++++.....+++++ +.+|.+.
T Consensus       145 g~~v~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~i~~~~~~~~~d~v~~~~~~~~~~~~~~~l-~~~g~~v  216 (303)
T cd08251         145 GAEIYATASSDDKLEYLKQLGVPHVINYVE-EDFEEEIMRLTGGRGVDVVINTLSGEAIQKGLNCL-APGGRYV  216 (303)
T ss_pred             CCEEEEEcCCHHHHHHHHHcCCCEEEeCCC-ccHHHHHHHHcCCCCceEEEECCcHHHHHHHHHHh-ccCcEEE
Confidence            999999999999999999999988888766 66777788888778999999999888889999999 7777764

Polyketide synthases produce polyketides in step by step mechanism that is similar to fatty acid synthesis. Enoyl reductase reduces a double to single bond. Erythromycin is one example of a polyketide generated by 3 complex enzymes (megasynthases). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde a

>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members

Probab=99.96  E-value=6.7e-28  Score=219.82  Aligned_cols=228  Identities=29%  Similarity=0.356  Sum_probs=192.7

Q ss_pred             cceEEecCCCCC------CCCCCCCCCCCCCCcEEEEeeeeecChhhHHHHcCCCCCCCCCCCcCCCceeEEEEEEccCC
Q psy1959          13 SDLLLYNGSGDA------KPTLPLVPGFEFSGTIIEKKMMTRINSSDLLLYNGSGDAKPTLPLVPGFEFSGTVIEVADTK   86 (296)
Q Consensus        13 ~~~~~~~~~~~~------~~~p~~~~~~~~~~evlvkv~~~~i~~~D~~~~~g~~~~~~~~p~~~G~e~~G~V~~v~~~~   86 (296)
                      |+++++..+++.      .|.|.+.++     +|+||+.++++|+.|.....|.+..+.++|.++|+|++|+|+++    
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~v~i~v~~~~~~~~d~~~~~g~~~~~~~~~~~~g~~~~G~v~~~----   71 (338)
T cd08254           1 MKAWRFHKGSKGLLVLEEVPVPEPGPG-----EVLVKVKAAGVCHSDLHILDGGVPTLTKLPLTLGHEIAGTVVEV----   71 (338)
T ss_pred             CeeEEEecCCCCceEEeccCCCCCCCC-----eEEEEEEEEeeccHhHHHHcCCCcccCCCCEeccccccEEEEEE----
Confidence            455555544432      466667778     99999999999999999999887655567889999999999999    


Q ss_pred             CCCCCCCCCCCCCCCCCEEEEe------------------c-------CCCCCcccceEeeeCCceEECCCCCCHHHHhh
Q psy1959          87 SSSTEEDDEEDVLQVGDKVLAL------------------N-------KELLHGFSDQCVVHTNDVFKIPEKMTFEHAAS  141 (296)
Q Consensus        87 ~~~~~~g~~v~~~~~Gd~V~~~------------------~-------~~~~g~~~~~~~v~~~~~~~iP~~~~~~~aa~  141 (296)
                            |+++..+++||+|++.                  .       ....|+|++|+.++.+.++++|++++..+++.
T Consensus        72 ------G~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~~~~~~a~~  145 (338)
T cd08254          72 ------GAGVTNFKVGDRVAVPAVIPCGACALCRRGRGNLCLNQGMPGLGIDGGFAEYIVVPARALVPVPDGVPFAQAAV  145 (338)
T ss_pred             ------CCCCccCCCCCEEEECCCCCCCCChhhhCcCcccCCCCCccccccCCcceeeEEechHHeEECCCCCCHHHhhh
Confidence                  9999999999999871                  1       01148999999999999999999999999999


Q ss_pred             hccHHHHHHHHHHHHcCCCCCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCcEEEEcCCchhHH
Q psy1959         142 LADSYSTAQIVFSRHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLV  221 (296)
Q Consensus       142 l~~~~~ta~~~l~~~~~~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  221 (296)
                      ++.++.+||+++....+++++++|+|.| +|++|++++++| +..|++|+++++++++.+.++++|.+.++...+ ....
T Consensus       146 ~~~~~~ta~~~l~~~~~~~~~~~vli~g-~g~vG~~~~~la-~~~G~~V~~~~~s~~~~~~~~~~g~~~~~~~~~-~~~~  222 (338)
T cd08254         146 ATDAVLTPYHAVVRAGEVKPGETVLVIG-LGGLGLNAVQIA-KAMGAAVIAVDIKEEKLELAKELGADEVLNSLD-DSPK  222 (338)
T ss_pred             hcchHHHHHHHHHhccCCCCCCEEEEEC-CcHHHHHHHHHH-HHcCCEEEEEcCCHHHHHHHHHhCCCEEEcCCC-cCHH
Confidence            9999999999998888899999999986 499999999999 668999999999999999999999888777665 4555


Q ss_pred             HHHHHHhCCCcccEEEECCCC-ccHHHHHHHhhccCceEE
Q psy1959         222 NKVLEVSGGKYANVVFEAVGG-EDKTDLIRQKGAWAALTF  260 (296)
Q Consensus       222 ~~i~~~~~~~g~d~vld~~g~-~~~~~~~~~lg~~~g~~~  260 (296)
                      +.+ +...++++|+++|++|. ..+..+++++ +.+|.+.
T Consensus       223 ~~~-~~~~~~~~D~vid~~g~~~~~~~~~~~l-~~~G~~v  260 (338)
T cd08254         223 DKK-AAGLGGGFDVIFDFVGTQPTFEDAQKAV-KPGGRIV  260 (338)
T ss_pred             HHH-HHhcCCCceEEEECCCCHHHHHHHHHHh-hcCCEEE
Confidence            555 55666789999999987 6889999999 7777764

This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio

>cd08252 AL_MDR Arginate lyase and other MDR family members

Probab=99.96  E-value=1.1e-27  Score=218.56  Aligned_cols=244  Identities=18%  Similarity=0.195  Sum_probs=199.2

Q ss_pred             cceEEecCCCCC----------CCCCCCCCCCCCCCcEEEEeeeeecChhhHHHHcCCCCCCCCCCCcCCCceeEEEEEE
Q psy1959          13 SDLLLYNGSGDA----------KPTLPLVPGFEFSGTIIEKKMMTRINSSDLLLYNGSGDAKPTLPLVPGFEFSGTVIEV   82 (296)
Q Consensus        13 ~~~~~~~~~~~~----------~~~p~~~~~~~~~~evlvkv~~~~i~~~D~~~~~g~~~~~~~~p~~~G~e~~G~V~~v   82 (296)
                      |+++++.++++.          .|.|.+.++     +|+||+.++++|+.|+..+.|..+. ..+|.++|||++|+|+++
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~v~v~v~~~~i~~~d~~~~~~~~~~-~~~~~~~g~e~~G~v~~~   74 (336)
T cd08252           1 MKAIGFTQPLPITDPDSLIDIELPKPVPGGR-----DLLVRVEAVSVNPVDTKVRAGGAPV-PGQPKILGWDASGVVEAV   74 (336)
T ss_pred             CceEEecCCCCCCcccceeEccCCCCCCCCC-----EEEEEEEEEEcCHHHHHHHcCCCCC-CCCCcccccceEEEEEEc
Confidence            567777776643          355556677     9999999999999999988776542 345778999999999999


Q ss_pred             ccCCCCCCCCCCCCCCCCCCCEEEEecC-CCCCcccceEeeeCCceEECCCCCCHHHHhhhccHHHHHHHHHHHHcCCCC
Q psy1959          83 ADTKSSSTEEDDEEDVLQVGDKVLALNK-ELLHGFSDQCVVHTNDVFKIPEKMTFEHAASLADSYSTAQIVFSRHAKLKE  161 (296)
Q Consensus        83 ~~~~~~~~~~g~~v~~~~~Gd~V~~~~~-~~~g~~~~~~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~  161 (296)
                                |+++..+++||+|++... ...|+|++|+.++...++++|+++++++++.++..+.+||.++.+.+.+.+
T Consensus        75 ----------G~~v~~~~~Gd~V~~~~~~~~~g~~~~~~~v~~~~~~~ip~~~~~~~~~~~~~~~~ta~~~l~~~~~~~~  144 (336)
T cd08252          75 ----------GSEVTLFKVGDEVYYAGDITRPGSNAEYQLVDERIVGHKPKSLSFAEAAALPLTSLTAWEALFDRLGISE  144 (336)
T ss_pred             ----------CCCCCCCCCCCEEEEcCCCCCCccceEEEEEchHHeeeCCCCCCHHHhhhhhhHHHHHHHHHHHhcCCCC
Confidence                      999989999999998642 125899999999999999999999999999999999999999878888887


Q ss_pred             -----CcEEEEEcCCCcHHHHHHHHHHHhCC-CEEEEEeCCcchHHHHHhcCCcEEEEcCCchhHHHHHHHHhCCCcccE
Q psy1959         162 -----KQTVLVTAAGGGLGLAAVDMATKIYK-AKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNKVLEVSGGKYANV  235 (296)
Q Consensus       162 -----g~~vlI~Ga~g~vG~aa~~la~~~~g-~~Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~g~d~  235 (296)
                           |++|+|+|++|++|++++++| +.+| ++|+++++++++.++++++|++.+++...  ++.+.+... .++++|+
T Consensus       145 ~~~~~g~~vlV~g~~g~vg~~~~~~a-~~~G~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~i~~~-~~~~~d~  220 (336)
T cd08252         145 DAENEGKTLLIIGGAGGVGSIAIQLA-KQLTGLTVIATASRPESIAWVKELGADHVINHHQ--DLAEQLEAL-GIEPVDY  220 (336)
T ss_pred             CcCCCCCEEEEEcCCchHHHHHHHHH-HHcCCcEEEEEcCChhhHHHHHhcCCcEEEeCCc--cHHHHHHhh-CCCCCCE
Confidence                 999999998899999999999 6689 99999999999999999999988777653  455556543 3468999


Q ss_pred             EEECCCC-ccHHHHHHHhhccCceEEeec--------ccceeeeeEEeccc
Q psy1959         236 VFEAVGG-EDKTDLIRQKGAWAALTFTNE--------KSLVNKVLEVSGGK  277 (296)
Q Consensus       236 vld~~g~-~~~~~~~~~lg~~~g~~~~~~--------~~~~~k~~~i~g~~  277 (296)
                      ++|++|+ ..+..+++++ +.+|++..-.        ..+..+++++.+..
T Consensus       221 vl~~~~~~~~~~~~~~~l-~~~g~~v~~g~~~~~~~~~~~~~~~~~~~~~~  270 (336)
T cd08252         221 IFCLTDTDQHWDAMAELI-APQGHICLIVDPQEPLDLGPLKSKSASFHWEF  270 (336)
T ss_pred             EEEccCcHHHHHHHHHHh-cCCCEEEEecCCCCcccchhhhcccceEEEEE
Confidence            9999996 7899999999 7666664321        12235666666543

This group contains a structure identified as an arginate lyase. Other members are identified quinone reductases, alginate lyases, and other proteins related to the zinc-dependent dehydrogenases/reductases. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, whil

>cd08272 MDR6 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.96  E-value=1.2e-27  Score=216.17  Aligned_cols=228  Identities=27%  Similarity=0.373  Sum_probs=195.0

Q ss_pred             cceEEecCCCCC-------CCCCCCCCCCCCCCcEEEEeeeeecChhhHHHHcCCCCCCCCCCCcCCCceeEEEEEEccC
Q psy1959          13 SDLLLYNGSGDA-------KPTLPLVPGFEFSGTIIEKKMMTRINSSDLLLYNGSGDAKPTLPLVPGFEFSGTVIEVADT   85 (296)
Q Consensus        13 ~~~~~~~~~~~~-------~~~p~~~~~~~~~~evlvkv~~~~i~~~D~~~~~g~~~~~~~~p~~~G~e~~G~V~~v~~~   85 (296)
                      ||++++.+++..       .+.|.+.++     +|+|++.++++|++|.....|....+...|.++|||++|+|+++   
T Consensus         1 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~-----~v~v~v~~~~i~~~d~~~~~~~~~~~~~~~~~~g~e~~G~v~~~---   72 (326)
T cd08272           1 MKALVLESFGGPEVFELREVPRPQPGPG-----QVLVRVHASGVNPLDTKIRRGGAAARPPLPAILGCDVAGVVEAV---   72 (326)
T ss_pred             CeEEEEccCCCchheEEeecCCCCCCCC-----eEEEEEEEEecCHHHHHHhCCCCCCCCCCCcccccceeEEEEEe---
Confidence            566777665542       344456677     99999999999999999988866544456889999999999999   


Q ss_pred             CCCCCCCCCCCCCCCCCCEEEEecCC---CCCcccceEeeeCCceEECCCCCCHHHHhhhccHHHHHHHHHHHHcCCCCC
Q psy1959          86 KSSSTEEDDEEDVLQVGDKVLALNKE---LLHGFSDQCVVHTNDVFKIPEKMTFEHAASLADSYSTAQIVFSRHAKLKEK  162 (296)
Q Consensus        86 ~~~~~~~g~~v~~~~~Gd~V~~~~~~---~~g~~~~~~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g  162 (296)
                             |+++..+++||+|+++...   ..|+|++|+.++.+.++++|+++++..++.++..+.+||+++.+..++++|
T Consensus        73 -------G~~~~~~~~Gd~V~~~~~~~~~~~g~~~~~~~v~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~  145 (326)
T cd08272          73 -------GEGVTRFRVGDEVYGCAGGLGGLQGSLAEYAVVDARLLALKPANLSMREAAALPLVGITAWEGLVDRAAVQAG  145 (326)
T ss_pred             -------CCCCCCCCCCCEEEEccCCcCCCCCceeEEEEecHHHcccCCCCCCHHHHHHhHHHHHHHHHHHHHhcCCCCC
Confidence                   9999999999999987511   138899999999999999999999999999999999999998888999999


Q ss_pred             cEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCcEEEEcCCchhHHHHHHHHhCCCcccEEEECCCC
Q psy1959         163 QTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNKVLEVSGGKYANVVFEAVGG  242 (296)
Q Consensus       163 ~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~g~d~vld~~g~  242 (296)
                      ++++|+|+.|++|++++++| +..|++|++++++ ++.+.++++|++..++... . +.+.+.+.+.++++|+++|++|+
T Consensus       146 ~~vli~g~~~~~g~~~~~~a-~~~g~~v~~~~~~-~~~~~~~~~g~~~~~~~~~-~-~~~~~~~~~~~~~~d~v~~~~~~  221 (326)
T cd08272         146 QTVLIHGGAGGVGHVAVQLA-KAAGARVYATASS-EKAAFARSLGADPIIYYRE-T-VVEYVAEHTGGRGFDVVFDTVGG  221 (326)
T ss_pred             CEEEEEcCCCcHHHHHHHHH-HHcCCEEEEEech-HHHHHHHHcCCCEEEecch-h-HHHHHHHhcCCCCCcEEEECCCh
Confidence            99999998899999999999 6789999999988 8899999999887777765 4 77778888877889999999999


Q ss_pred             ccHHHHHHHhhccCceEE
Q psy1959         243 EDKTDLIRQKGAWAALTF  260 (296)
Q Consensus       243 ~~~~~~~~~lg~~~g~~~  260 (296)
                      .....+++++ +.+|.+.
T Consensus       222 ~~~~~~~~~l-~~~g~~v  238 (326)
T cd08272         222 ETLDASFEAV-ALYGRVV  238 (326)
T ss_pred             HHHHHHHHHh-ccCCEEE
Confidence            8888899999 6666654

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>cd08287 FDH_like_ADH3 formaldehyde dehydrogenase (FDH)-like

Probab=99.96  E-value=8e-28  Score=220.56  Aligned_cols=226  Identities=27%  Similarity=0.332  Sum_probs=187.8

Q ss_pred             cceEEecCCCCC----CCCCCC-CCCCCCCCcEEEEeeeeecChhhHHHHcCCCCCCCCCCCcCCCceeEEEEEEccCCC
Q psy1959          13 SDLLLYNGSGDA----KPTLPL-VPGFEFSGTIIEKKMMTRINSSDLLLYNGSGDAKPTLPLVPGFEFSGTVIEVADTKS   87 (296)
Q Consensus        13 ~~~~~~~~~~~~----~~~p~~-~~~~~~~~evlvkv~~~~i~~~D~~~~~g~~~~~~~~p~~~G~e~~G~V~~v~~~~~   87 (296)
                      |++++|+++++.    .|.|.| .++     ||+||+.++++|++|+..+.|.++.  ..|.++|||++|+|+++     
T Consensus         1 m~~~~~~~~~~~~~~~~~~p~~~~~~-----ev~V~v~~~~i~~~d~~~~~g~~~~--~~~~~~g~e~~G~V~~v-----   68 (345)
T cd08287           1 MRATVIHGPGDIRVEEVPDPVIEEPT-----DAVIRVVATCVCGSDLWPYRGVSPT--RAPAPIGHEFVGVVEEV-----   68 (345)
T ss_pred             CceeEEecCCceeEEeCCCCCCCCCC-----eEEEEEeeeeecccchhhhcCCCCC--CCCcccccceEEEEEEe-----
Confidence            678888876655    567775 678     9999999999999999998887642  34789999999999999     


Q ss_pred             CCCCCCCCCCCCCCCCEEEE-ecC------------------------CCCCcccceEeeeCC--ceEECCCCCCHHHH-
Q psy1959          88 SSTEEDDEEDVLQVGDKVLA-LNK------------------------ELLHGFSDQCVVHTN--DVFKIPEKMTFEHA-  139 (296)
Q Consensus        88 ~~~~~g~~v~~~~~Gd~V~~-~~~------------------------~~~g~~~~~~~v~~~--~~~~iP~~~~~~~a-  139 (296)
                           |+++..+++||+|++ +..                        ...|+|++|+.++.+  .++++|++++++.+ 
T Consensus        69 -----G~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~~~lP~~l~~~~~~  143 (345)
T cd08287          69 -----GSEVTSVKPGDFVIAPFAISDGTCPFCRAGFTTSCVHGGFWGAFVDGGQGEYVRVPLADGTLVKVPGSPSDDEDL  143 (345)
T ss_pred             -----CCCCCccCCCCEEEeccccCCCCChhhhCcCcccCCCCCcccCCCCCceEEEEEcchhhCceEECCCCCChhhhh
Confidence                 999999999999987 211                        123899999999975  89999999987221 


Q ss_pred             ----hhhccHHHHHHHHHHHHcCCCCCcEEEEEcCCCcHHHHHHHHHHHhCCCE-EEEEeCCcchHHHHHhcCCcEEEEc
Q psy1959         140 ----ASLADSYSTAQIVFSRHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKAK-VIGVCNSEDKTDLIRQKGAWAALTF  214 (296)
Q Consensus       140 ----a~l~~~~~ta~~~l~~~~~~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~~-Vi~~~~~~~~~~~~~~~g~~~~~~~  214 (296)
                          +++...+.+||+++ ..+++++|++++|.| .|++|++++++| +..|++ ++++++++++.+.++++|++.++++
T Consensus       144 ~~~~~~l~~~~~~a~~~~-~~~~~~~g~~vlI~g-~g~vg~~~~~la-k~~G~~~v~~~~~~~~~~~~~~~~ga~~v~~~  220 (345)
T cd08287         144 LPSLLALSDVMGTGHHAA-VSAGVRPGSTVVVVG-DGAVGLCAVLAA-KRLGAERIIAMSRHEDRQALAREFGATDIVAE  220 (345)
T ss_pred             hhhhHhhhcHHHHHHHHH-HhcCCCCCCEEEEEC-CCHHHHHHHHHH-HHcCCCEEEEECCCHHHHHHHHHcCCceEecC
Confidence                23446789999998 578999999999987 599999999999 678995 7888888888889999999888888


Q ss_pred             CCchhHHHHHHHHhCCCcccEEEECCCC-ccHHHHHHHhhccCceEE
Q psy1959         215 TNEKSLVNKVLEVSGGKYANVVFEAVGG-EDKTDLIRQKGAWAALTF  260 (296)
Q Consensus       215 ~~~~~~~~~i~~~~~~~g~d~vld~~g~-~~~~~~~~~lg~~~g~~~  260 (296)
                      +. .++.+.+.+.+++.++|+++|++|+ ..+..+++++ +.+|++.
T Consensus       221 ~~-~~~~~~i~~~~~~~~~d~il~~~g~~~~~~~~~~~l-~~~g~~v  265 (345)
T cd08287         221 RG-EEAVARVRELTGGVGADAVLECVGTQESMEQAIAIA-RPGGRVG  265 (345)
T ss_pred             Cc-ccHHHHHHHhcCCCCCCEEEECCCCHHHHHHHHHhh-ccCCEEE
Confidence            76 6777888888877899999999987 6889999999 7777663

This group contains proteins identified as alcohol dehydrogenases and glutathione-dependant formaldehyde dehydrogenases (FDH) of the zinc-dependent/medium chain alcohol dehydrogenase family. The MDR family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.

>cd08259 Zn_ADH5 Alcohol dehydrogenases of the MDR family

Probab=99.96  E-value=1.2e-27  Score=217.44  Aligned_cols=223  Identities=29%  Similarity=0.388  Sum_probs=188.1

Q ss_pred             cceEEecCCCCC-----CCCCCCCCCCCCCCcEEEEeeeeecChhhHHHHcCCCCCCCCCCCcCCCceeEEEEEEccCCC
Q psy1959          13 SDLLLYNGSGDA-----KPTLPLVPGFEFSGTIIEKKMMTRINSSDLLLYNGSGDAKPTLPLVPGFEFSGTVIEVADTKS   87 (296)
Q Consensus        13 ~~~~~~~~~~~~-----~~~p~~~~~~~~~~evlvkv~~~~i~~~D~~~~~g~~~~~~~~p~~~G~e~~G~V~~v~~~~~   87 (296)
                      |+++++..+.+.     .|.|.+.++     +|+|++.++++|+.|+....|.++. ...|.++|+|++|+|+++     
T Consensus         1 m~a~~~~~~~~~~~~~~~~~p~~~~~-----~v~v~v~~~~i~~~d~~~~~g~~~~-~~~~~~~g~e~~G~v~~~-----   69 (332)
T cd08259           1 MKAAILHKPNKPLQIEEVPDPEPGPG-----EVLIKVKAAGVCYRDLLFWKGFFPR-GKYPLILGHEIVGTVEEV-----   69 (332)
T ss_pred             CeEEEEecCCCceEEEEccCCCCCCC-----eEEEEEEEEecchhhhHHhcCCCCC-CCCCeeccccceEEEEEE-----
Confidence            567777653323     577777888     9999999999999999999886653 345789999999999999     


Q ss_pred             CCCCCCCCCCCCCCCCEEEEecC-------------------------CCCCcccceEeeeCCceEECCCCCCHHHHhhh
Q psy1959          88 SSTEEDDEEDVLQVGDKVLALNK-------------------------ELLHGFSDQCVVHTNDVFKIPEKMTFEHAASL  142 (296)
Q Consensus        88 ~~~~~g~~v~~~~~Gd~V~~~~~-------------------------~~~g~~~~~~~v~~~~~~~iP~~~~~~~aa~l  142 (296)
                           |++++.+++||+|+++..                         ...|+|++|++++...++++|+++++++++.+
T Consensus        70 -----G~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~ip~~~~~~~~~~~  144 (332)
T cd08259          70 -----GEGVERFKPGDRVILYYYIPCGKCEYCLSGEENLCRNRAEYGEEVDGGFAEYVKVPERSLVKLPDNVSDESAALA  144 (332)
T ss_pred             -----CCCCccCCCCCEEEECCCCCCcCChhhhCCCcccCCCccccccccCCeeeeEEEechhheEECCCCCCHHHHhhh
Confidence                 999999999999998751                         01489999999999999999999999999999


Q ss_pred             ccHHHHHHHHHHHHcCCCCCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCcEEEEcCCchhHHH
Q psy1959         143 ADSYSTAQIVFSRHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVN  222 (296)
Q Consensus       143 ~~~~~ta~~~l~~~~~~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  222 (296)
                      +.++.+||+++.. ..+.++++++|+|++|++|+++++++ +..|++|+++++++++.+.+++++.+.+++..   ++.+
T Consensus       145 ~~~~~ta~~~l~~-~~~~~~~~vlI~ga~g~vG~~~~~~a-~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~  219 (332)
T cd08259         145 ACVVGTAVHALKR-AGVKKGDTVLVTGAGGGVGIHAIQLA-KALGARVIAVTRSPEKLKILKELGADYVIDGS---KFSE  219 (332)
T ss_pred             ccHHHHHHHHHHH-hCCCCCCEEEEECCCCHHHHHHHHHH-HHcCCeEEEEeCCHHHHHHHHHcCCcEEEecH---HHHH
Confidence            9999999999966 88999999999999999999999999 67899999999988898988888876666442   2445


Q ss_pred             HHHHHhCCCcccEEEECCCCccHHHHHHHhhccCceEE
Q psy1959         223 KVLEVSGGKYANVVFEAVGGEDKTDLIRQKGAWAALTF  260 (296)
Q Consensus       223 ~i~~~~~~~g~d~vld~~g~~~~~~~~~~lg~~~g~~~  260 (296)
                      .+.+..   ++|++++++|......+++++ +.+|.+.
T Consensus       220 ~~~~~~---~~d~v~~~~g~~~~~~~~~~~-~~~g~~v  253 (332)
T cd08259         220 DVKKLG---GADVVIELVGSPTIEESLRSL-NKGGRLV  253 (332)
T ss_pred             HHHhcc---CCCEEEECCChHHHHHHHHHh-hcCCEEE
Confidence            555443   799999999998888999999 6666664

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group contains proteins that share the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenase family. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES.

>PRK05396 tdh L-threonine 3-dehydrogenase; Validated

Probab=99.96  E-value=1.1e-27  Score=219.53  Aligned_cols=242  Identities=24%  Similarity=0.277  Sum_probs=194.9

Q ss_pred             cceEEecCCCCC-----CCCCCCCCCCCCCCcEEEEeeeeecChhhHHHHcCCC-C-CCCCCCCcCCCceeEEEEEEccC
Q psy1959          13 SDLLLYNGSGDA-----KPTLPLVPGFEFSGTIIEKKMMTRINSSDLLLYNGSG-D-AKPTLPLVPGFEFSGTVIEVADT   85 (296)
Q Consensus        13 ~~~~~~~~~~~~-----~~~p~~~~~~~~~~evlvkv~~~~i~~~D~~~~~g~~-~-~~~~~p~~~G~e~~G~V~~v~~~   85 (296)
                      ||++++.++++.     .|.|.|.++     ||+||+.++++|++|+.++.+.. . ....+|.++|||++|+|+++   
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~p~~~~~-----evlV~v~~~~v~~~d~~~~~~~~~~~~~~~~p~~~g~e~~G~V~~v---   72 (341)
T PRK05396          1 MKALVKLKAEPGLWLTDVPVPEPGPN-----DVLIKVKKTAICGTDVHIYNWDEWAQKTIPVPMVVGHEFVGEVVEV---   72 (341)
T ss_pred             CceEEEecCCCceEEEECCCCCCCCC-----eEEEEEEEEEEcccchHhhcCCCcccccCCCCcccceeeEEEEEEe---
Confidence            577888777753     577788888     99999999999999999876632 1 12346789999999999999   


Q ss_pred             CCCCCCCCCCCCCCCCCCEEEEecC-------------------------CCCCcccceEeeeCCceEECCCCCCHHHHh
Q psy1959          86 KSSSTEEDDEEDVLQVGDKVLALNK-------------------------ELLHGFSDQCVVHTNDVFKIPEKMTFEHAA  140 (296)
Q Consensus        86 ~~~~~~~g~~v~~~~~Gd~V~~~~~-------------------------~~~g~~~~~~~v~~~~~~~iP~~~~~~~aa  140 (296)
                             |+++..+++||+|++...                         ...|+|++|+.++.+.++++|+++++++++
T Consensus        73 -------G~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~iP~~l~~~~~~  145 (341)
T PRK05396         73 -------GSEVTGFKVGDRVSGEGHIVCGHCRNCRAGRRHLCRNTKGVGVNRPGAFAEYLVIPAFNVWKIPDDIPDDLAA  145 (341)
T ss_pred             -------CCCCCcCCCCCEEEECCCCCCCCChhhhCcChhhCCCcceeeecCCCcceeeEEechHHeEECcCCCCHHHhH
Confidence                   999999999999997521                         024899999999999999999999998887


Q ss_pred             hhccHHHHHHHHHHHHcCCCCCcEEEEEcCCCcHHHHHHHHHHHhCCC-EEEEEeCCcchHHHHHhcCCcEEEEcCCchh
Q psy1959         141 SLADSYSTAQIVFSRHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKA-KVIGVCNSEDKTDLIRQKGAWAALTFTNEKS  219 (296)
Q Consensus       141 ~l~~~~~ta~~~l~~~~~~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~-~Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~  219 (296)
                      . ..++.+++.++..  ...+|++|+|.|+ |++|++++|+| +..|+ +|+++++++++.+.++++|++.++++++ .+
T Consensus       146 ~-~~~~~~~~~~~~~--~~~~g~~vlV~~~-g~vg~~~~~la-~~~G~~~v~~~~~~~~~~~~~~~lg~~~~~~~~~-~~  219 (341)
T PRK05396        146 I-FDPFGNAVHTALS--FDLVGEDVLITGA-GPIGIMAAAVA-KHVGARHVVITDVNEYRLELARKMGATRAVNVAK-ED  219 (341)
T ss_pred             h-hhHHHHHHHHHHc--CCCCCCeEEEECC-CHHHHHHHHHH-HHcCCCEEEEEcCCHHHHHHHHHhCCcEEecCcc-cc
Confidence            4 4677777766532  3468999999885 99999999999 66899 6888888888999999999988888876 67


Q ss_pred             HHHHHHHHhCCCcccEEEECCCC-ccHHHHHHHhhccCceEEeec----------ccceeeeeEEecc
Q psy1959         220 LVNKVLEVSGGKYANVVFEAVGG-EDKTDLIRQKGAWAALTFTNE----------KSLVNKVLEVSGG  276 (296)
Q Consensus       220 ~~~~i~~~~~~~g~d~vld~~g~-~~~~~~~~~lg~~~g~~~~~~----------~~~~~k~~~i~g~  276 (296)
                      +.+.+.+.+.++++|++|||.|+ ..+..+++++ +.+|.+..-.          ..+..+++++.++
T Consensus       220 ~~~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l-~~~G~~v~~g~~~~~~~~~~~~~~~~~~~l~~~  286 (341)
T PRK05396        220 LRDVMAELGMTEGFDVGLEMSGAPSAFRQMLDNM-NHGGRIAMLGIPPGDMAIDWNKVIFKGLTIKGI  286 (341)
T ss_pred             HHHHHHHhcCCCCCCEEEECCCCHHHHHHHHHHH-hcCCEEEEEecCCCCCcccHHHHhhcceEEEEE
Confidence            77888888777899999999997 6789999999 7777664321          2444566666654

>cd08262 Zn_ADH8 Alcohol dehydrogenases of the MDR family

Probab=99.96  E-value=1e-27  Score=219.47  Aligned_cols=226  Identities=22%  Similarity=0.316  Sum_probs=183.9

Q ss_pred             cceEEecCCCCC----CCCCCCCCCCCCCCcEEEEeeeeecChhhHHHHcCCCC----------CCCCCCCcCCCceeEE
Q psy1959          13 SDLLLYNGSGDA----KPTLPLVPGFEFSGTIIEKKMMTRINSSDLLLYNGSGD----------AKPTLPLVPGFEFSGT   78 (296)
Q Consensus        13 ~~~~~~~~~~~~----~~~p~~~~~~~~~~evlvkv~~~~i~~~D~~~~~g~~~----------~~~~~p~~~G~e~~G~   78 (296)
                      |+++++..+ ..    .|.|.+.++     ||+||+.++++|+.|+....|...          ....+|.++|+|++|+
T Consensus         1 m~a~~~~~~-~~~~~~~~~p~~~~~-----~v~V~v~~~~~~~~d~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~e~~G~   74 (341)
T cd08262           1 MRAAVFRDG-PLVVRDVPDPEPGPG-----QVLVKVLACGICGSDLHATAHPEAMVDDAGGPSLMDLGADIVLGHEFCGE   74 (341)
T ss_pred             CceEEEeCC-ceEEEecCCCCCCCC-----eEEEEEEEEEEcccchHHHcCCCcccccccccccccCCCCcccccceeEE
Confidence            466666544 22    567788888     999999999999999999887321          1223578999999999


Q ss_pred             EEEEccCCCCCCCCCCCCCC-CCCCCEEEEecC---------------CCCCcccceEeeeCCceEECCCCCCHHHHhhh
Q psy1959          79 VIEVADTKSSSTEEDDEEDV-LQVGDKVLALNK---------------ELLHGFSDQCVVHTNDVFKIPEKMTFEHAASL  142 (296)
Q Consensus        79 V~~v~~~~~~~~~~g~~v~~-~~~Gd~V~~~~~---------------~~~g~~~~~~~v~~~~~~~iP~~~~~~~aa~l  142 (296)
                      |+++          |++++. +++||+|++++.               ...|+|++|++++.+.++++|++++.++++ +
T Consensus        75 V~~v----------G~~v~~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~lP~~~s~~~a~-~  143 (341)
T cd08262          75 VVDY----------GPGTERKLKVGTRVTSLPLLLCGQGASCGIGLSPEAPGGYAEYMLLSEALLLRVPDGLSMEDAA-L  143 (341)
T ss_pred             EEEe----------CCCCcCCCCCCCEEEecCCcCCCCChhhhCCCCcCCCCceeeeEEechHHeEECCCCCCHHHhh-h
Confidence            9999          999987 999999998731               124899999999999999999999999876 6


Q ss_pred             ccHHHHHHHHHHHHcCCCCCcEEEEEcCCCcHHHHHHHHHHHhCCCE-EEEEeCCcchHHHHHhcCCcEEEEcCCch---
Q psy1959         143 ADSYSTAQIVFSRHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKAK-VIGVCNSEDKTDLIRQKGAWAALTFTNEK---  218 (296)
Q Consensus       143 ~~~~~ta~~~l~~~~~~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~~-Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~---  218 (296)
                      +.++++||+++ ..+++++|++|+|+|+ |++|++++|+| +.+|++ ++++++++++.+.++++|++.++++++..   
T Consensus       144 ~~~~~~a~~~~-~~~~~~~g~~VlI~g~-g~vg~~~~~la-~~~G~~~v~~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~  220 (341)
T cd08262         144 TEPLAVGLHAV-RRARLTPGEVALVIGC-GPIGLAVIAAL-KARGVGPIVASDFSPERRALALAMGADIVVDPAADSPFA  220 (341)
T ss_pred             hhhHHHHHHHH-HhcCCCCCCEEEEECC-CHHHHHHHHHH-HHcCCcEEEEECCCHHHHHHHHHcCCcEEEcCCCcCHHH
Confidence            78899999986 7899999999999985 99999999999 568986 67777788899999999988778775411   


Q ss_pred             hHHHHHHHHhCCCcccEEEECCCC-ccHHHHHHHhhccCceEE
Q psy1959         219 SLVNKVLEVSGGKYANVVFEAVGG-EDKTDLIRQKGAWAALTF  260 (296)
Q Consensus       219 ~~~~~i~~~~~~~g~d~vld~~g~-~~~~~~~~~lg~~~g~~~  260 (296)
                      .+. .+.+...++++|+++|++|+ ..+..+++++ +.+|++.
T Consensus       221 ~~~-~~~~~~~~~~~d~vid~~g~~~~~~~~~~~l-~~~g~~v  261 (341)
T cd08262         221 AWA-AELARAGGPKPAVIFECVGAPGLIQQIIEGA-PPGGRIV  261 (341)
T ss_pred             HHH-HHHHHhCCCCCCEEEECCCCHHHHHHHHHHh-ccCCEEE
Confidence            222 34455556789999999998 5788899999 7777764

The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i

>cd08248 RTN4I1 Human Reticulon 4 Interacting Protein 1

Probab=99.96  E-value=1.1e-27  Score=219.82  Aligned_cols=215  Identities=24%  Similarity=0.360  Sum_probs=180.8

Q ss_pred             CCCCCCC-CCCCCCCcEEEEeeeeecChhhHHHHcCCCC--------------CCCCCCCcCCCceeEEEEEEccCCCCC
Q psy1959          25 KPTLPLV-PGFEFSGTIIEKKMMTRINSSDLLLYNGSGD--------------AKPTLPLVPGFEFSGTVIEVADTKSSS   89 (296)
Q Consensus        25 ~~~p~~~-~~~~~~~evlvkv~~~~i~~~D~~~~~g~~~--------------~~~~~p~~~G~e~~G~V~~v~~~~~~~   89 (296)
                      .+.|.|. ++     ||+||+.++++|++|+....|...              ....+|.++|||++|+|+.+       
T Consensus        21 ~~~p~~~~~~-----ev~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~~~~~~~~~~~p~~~G~e~~G~v~~v-------   88 (350)
T cd08248          21 ARIPVIRKPN-----QVLIKVHAASVNPIDVLMRSGYGRTLLNKKRKPQSCKYSGIEFPLTLGRDCSGVVVDI-------   88 (350)
T ss_pred             cCCCCCCCCC-----eEEEEEEEEecCchhHHHHcCCccchhhhhhccccccccCCCCCeeecceeEEEEEec-------
Confidence            5666674 78     999999999999999999887421              02356889999999999999       


Q ss_pred             CCCCCCCCCCCCCCEEEEecC-CCCCcccceEeeeCCceEECCCCCCHHHHhhhccHHHHHHHHHHHHcCCCC----CcE
Q psy1959          90 TEEDDEEDVLQVGDKVLALNK-ELLHGFSDQCVVHTNDVFKIPEKMTFEHAASLADSYSTAQIVFSRHAKLKE----KQT  164 (296)
Q Consensus        90 ~~~g~~v~~~~~Gd~V~~~~~-~~~g~~~~~~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~----g~~  164 (296)
                         |+++.++++||+|++... ...|+|++|+.++.+.++++|+++++++++.++.++.+||.++.+...+.+    |++
T Consensus        89 ---G~~v~~~~~Gd~V~~~~~~~~~g~~~~~~~v~~~~~~~lp~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~g~~  165 (350)
T cd08248          89 ---GSGVKSFEIGDEVWGAVPPWSQGTHAEYVVVPENEVSKKPKNLSHEEAASLPYAGLTAWSALVNVGGLNPKNAAGKR  165 (350)
T ss_pred             ---CCCcccCCCCCEEEEecCCCCCccceeEEEecHHHeecCCCCCCHHHHhhchhHHHHHHHHHHHhccCCCccCCCCE
Confidence               999999999999998752 124899999999999999999999999999999999999999877777754    999


Q ss_pred             EEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCcEEEEcCCchhHHHHHHHHhCCCcccEEEECCCCcc
Q psy1959         165 VLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNKVLEVSGGKYANVVFEAVGGED  244 (296)
Q Consensus       165 vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~g~d~vld~~g~~~  244 (296)
                      ++|+|++|++|++++++| +.+|++|+++.++ ++.+.++++|++..++..+ .++.+.+..   .+++|+++|++|+..
T Consensus       166 vlI~g~~g~ig~~~~~~a-~~~G~~v~~~~~~-~~~~~~~~~g~~~~~~~~~-~~~~~~l~~---~~~vd~vi~~~g~~~  239 (350)
T cd08248         166 VLILGGSGGVGTFAIQLL-KAWGAHVTTTCST-DAIPLVKSLGADDVIDYNN-EDFEEELTE---RGKFDVILDTVGGDT  239 (350)
T ss_pred             EEEECCCChHHHHHHHHH-HHCCCeEEEEeCc-chHHHHHHhCCceEEECCC-hhHHHHHHh---cCCCCEEEECCChHH
Confidence            999999899999999999 6789999988754 6778888899887777765 445444433   358999999999988


Q ss_pred             HHHHHHHhhccCceEEe
Q psy1959         245 KTDLIRQKGAWAALTFT  261 (296)
Q Consensus       245 ~~~~~~~lg~~~g~~~~  261 (296)
                      ...+++++ +.+|++..
T Consensus       240 ~~~~~~~l-~~~G~~v~  255 (350)
T cd08248         240 EKWALKLL-KKGGTYVT  255 (350)
T ss_pred             HHHHHHHh-ccCCEEEE
Confidence            99999999 77777743

Human Reticulon 4 Interacting Protein 1 is a member of the medium chain dehydrogenase/ reductase (MDR) family. Riticulons are endoplasmic reticulum associated proteins involved in membrane trafficking and neuroendocrine secretion. The MDR/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.

>cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD)

Probab=99.96  E-value=1.5e-27  Score=218.44  Aligned_cols=227  Identities=25%  Similarity=0.259  Sum_probs=188.8

Q ss_pred             CCCCCCCCCCCCCCcEEEEeeeeecChhhHHHHcCCCCCCCCCCCcCCCceeEEEEEEccCCCCCCCCCCCCCCCCCCCE
Q psy1959          25 KPTLPLVPGFEFSGTIIEKKMMTRINSSDLLLYNGSGDAKPTLPLVPGFEFSGTVIEVADTKSSSTEEDDEEDVLQVGDK  104 (296)
Q Consensus        25 ~~~p~~~~~~~~~~evlvkv~~~~i~~~D~~~~~g~~~~~~~~p~~~G~e~~G~V~~v~~~~~~~~~~g~~v~~~~~Gd~  104 (296)
                      .+.|.|.++     ||+||+.++++|++|...+.|.... ..+|.++|||++|+|+++          |+++..+++||+
T Consensus        17 ~~~p~~~~~-----evlirv~a~~i~~~d~~~~~g~~~~-~~~p~~~g~e~~G~V~~v----------G~~v~~~~~Gd~   80 (337)
T cd05283          17 FERRPLGPD-----DVDIKITYCGVCHSDLHTLRNEWGP-TKYPLVPGHEIVGIVVAV----------GSKVTKFKVGDR   80 (337)
T ss_pred             ccCCCCCCC-----eEEEEEEEecccchHHHHhcCCcCC-CCCCcccCcceeeEEEEE----------CCCCcccCCCCE
Confidence            678888999     9999999999999999999887643 456889999999999999          999999999999


Q ss_pred             EEEec---------------------------------CCCCCcccceEeeeCCceEECCCCCCHHHHhhhccHHHHHHH
Q psy1959         105 VLALN---------------------------------KELLHGFSDQCVVHTNDVFKIPEKMTFEHAASLADSYSTAQI  151 (296)
Q Consensus       105 V~~~~---------------------------------~~~~g~~~~~~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~  151 (296)
                      |+...                                 ....|+|++|+.++.+.++++|+++++++++.+...+.+||+
T Consensus        81 V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~lp~~~~~~~aa~l~~~~~ta~~  160 (337)
T cd05283          81 VGVGCQVDSCGTCEQCKSGEEQYCPKGVVTYNGKYPDGTITQGGYADHIVVDERFVFKIPEGLDSAAAAPLLCAGITVYS  160 (337)
T ss_pred             EEEecCCCCCCCCccccCCchhcCcchhhcccccccCCCcCCCcceeEEEechhheEECCCCCCHHHhhhhhhHHHHHHH
Confidence            97310                                 012589999999999999999999999999999999999999


Q ss_pred             HHHHHcCCCCCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCcEEEEcCCchhHHHHHHHHhCCC
Q psy1959         152 VFSRHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNKVLEVSGGK  231 (296)
Q Consensus       152 ~l~~~~~~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~  231 (296)
                      ++.+ ..+++|++++|.|+ |++|++++++| +..|++|+++++++++.++++++|++.+++..+ .+...   . . ++
T Consensus       161 ~~~~-~~~~~g~~vlV~g~-g~vG~~~~~~a-~~~G~~v~~~~~~~~~~~~~~~~g~~~vi~~~~-~~~~~---~-~-~~  231 (337)
T cd05283         161 PLKR-NGVGPGKRVGVVGI-GGLGHLAVKFA-KALGAEVTAFSRSPSKKEDALKLGADEFIATKD-PEAMK---K-A-AG  231 (337)
T ss_pred             HHHh-cCCCCCCEEEEECC-cHHHHHHHHHH-HHcCCeEEEEcCCHHHHHHHHHcCCcEEecCcc-hhhhh---h-c-cC
Confidence            9854 56899999999875 99999999999 568999999999999999999999888877654 33221   1 1 45


Q ss_pred             cccEEEECCCCc-cHHHHHHHhhccCceEEe----------ecccceeeeeEEeccc
Q psy1959         232 YANVVFEAVGGE-DKTDLIRQKGAWAALTFT----------NEKSLVNKVLEVSGGK  277 (296)
Q Consensus       232 g~d~vld~~g~~-~~~~~~~~lg~~~g~~~~----------~~~~~~~k~~~i~g~~  277 (296)
                      ++|+++||+|.. ....+++++ +.+|.+..          +...++.+++++.++.
T Consensus       232 ~~d~v~~~~g~~~~~~~~~~~l-~~~G~~v~~g~~~~~~~~~~~~~~~~~~~i~~~~  287 (337)
T cd05283         232 SLDLIIDTVSASHDLDPYLSLL-KPGGTLVLVGAPEEPLPVPPFPLIFGRKSVAGSL  287 (337)
T ss_pred             CceEEEECCCCcchHHHHHHHh-cCCCEEEEEeccCCCCccCHHHHhcCceEEEEec
Confidence            899999999996 589999999 66666632          2223466888888765

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic

>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.96  E-value=9e-28  Score=211.52  Aligned_cols=224  Identities=31%  Similarity=0.456  Sum_probs=189.4

Q ss_pred             cEEEEeeeeecChhhHHHHcCCCCCCCCCCCcCCCceeEEEEEEccCCCCCCCCCCCCCCCCCCCEEEEecCC-------
Q psy1959          39 TIIEKKMMTRINSSDLLLYNGSGDAKPTLPLVPGFEFSGTVIEVADTKSSSTEEDDEEDVLQVGDKVLALNKE-------  111 (296)
Q Consensus        39 evlvkv~~~~i~~~D~~~~~g~~~~~~~~p~~~G~e~~G~V~~v~~~~~~~~~~g~~v~~~~~Gd~V~~~~~~-------  111 (296)
                      ||+||+.++++|+.|+....|.......+|.++|+|++|+|+++          |+++..|++||+|++....       
T Consensus         1 ~v~i~v~~~~i~~~d~~~~~g~~~~~~~~~~~~G~e~~G~v~~~----------G~~v~~~~~Gd~V~~~~~~~~~~~~~   70 (271)
T cd05188           1 EVLVRVEAAGLCGTDLHIRRGGYPPPPKLPLILGHEGAGVVVEV----------GPGVTGVKVGDRVVVLPNLGCGTCEL   70 (271)
T ss_pred             CeEEEEEEEEecchhHHHHcCCCCcCCCCCcccccccEEEEEEE----------CCCCCcCCCCCEEEEcCCCCCCCCHH
Confidence            68999999999999999998876533456889999999999999          9999999999999987521       


Q ss_pred             --------------CCCcccceEeeeCCceEECCCCCCHHHHhhhccHHHHHHHHHHHHcCCCCCcEEEEEcCCCcHHHH
Q psy1959         112 --------------LLHGFSDQCVVHTNDVFKIPEKMTFEHAASLADSYSTAQIVFSRHAKLKEKQTVLVTAAGGGLGLA  177 (296)
Q Consensus       112 --------------~~g~~~~~~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vlI~Ga~g~vG~a  177 (296)
                                    ..|+|++|+.++.+.++++|+++++++++.++.++.+||+++.....++++++|+|+|+++ +|++
T Consensus        71 ~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~ip~~~~~~~a~~~~~~~~~a~~~l~~~~~~~~~~~vli~g~~~-~G~~  149 (271)
T cd05188          71 CRELCPGGGILGEGLDGGFAEYVVVPADNLVPLPDGLSLEEAALLPEPLATAYHALRRAGVLKPGDTVLVLGAGG-VGLL  149 (271)
T ss_pred             HHhhCCCCCEeccccCCcceEEEEechHHeEECCCCCCHHHhhHhcCHHHHHHHHHHhccCCCCCCEEEEECCCH-HHHH
Confidence                          2589999999999999999999999999999999999999998777779999999999866 9999


Q ss_pred             HHHHHHHhCCCEEEEEeCCcchHHHHHhcCCcEEEEcCCchhHHHHHHHHhCCCcccEEEECCCC-ccHHHHHHHhhccC
Q psy1959         178 AVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNKVLEVSGGKYANVVFEAVGG-EDKTDLIRQKGAWA  256 (296)
Q Consensus       178 a~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~g~d~vld~~g~-~~~~~~~~~lg~~~  256 (296)
                      +++++ +..|.+|+++++++++.+.++++|++..++..+ .+..+.+. ...++++|+++++++. .....+++++ +.+
T Consensus       150 ~~~~a-~~~g~~v~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~~-~~~~~~~d~vi~~~~~~~~~~~~~~~l-~~~  225 (271)
T cd05188         150 AAQLA-KAAGARVIVTDRSDEKLELAKELGADHVIDYKE-EDLEEELR-LTGGGGADVVIDAVGGPETLAQALRLL-RPG  225 (271)
T ss_pred             HHHHH-HHcCCeEEEEcCCHHHHHHHHHhCCceeccCCc-CCHHHHHH-HhcCCCCCEEEECCCCHHHHHHHHHhc-ccC
Confidence            99999 668999999999999999999999877777665 45555555 5556789999999999 7889999999 777


Q ss_pred             ceEEeec-----------ccceeeeeEEeccc
Q psy1959         257 ALTFTNE-----------KSLVNKVLEVSGGK  277 (296)
Q Consensus       257 g~~~~~~-----------~~~~~k~~~i~g~~  277 (296)
                      |.+....           ...+.+++++.++.
T Consensus       226 G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (271)
T cd05188         226 GRIVVVGGTSGGPPLDDLRRLLFKELTIIGST  257 (271)
T ss_pred             CEEEEEccCCCCCCcccHHHHHhcceEEEEee
Confidence            7664321           23456677777665

The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro

>TIGR02823 oxido_YhdH putative quinone oxidoreductase, YhdH/YhfP family

Probab=99.96  E-value=1.9e-27  Score=216.00  Aligned_cols=230  Identities=20%  Similarity=0.298  Sum_probs=186.7

Q ss_pred             CCCCCCCCCCCCCCcEEEEeeeeecChhhHHHHcCCCCCCCCCCCcCCCceeEEEEEEccCCCCCCCCCCCCCCCCCCCE
Q psy1959          25 KPTLPLVPGFEFSGTIIEKKMMTRINSSDLLLYNGSGDAKPTLPLVPGFEFSGTVIEVADTKSSSTEEDDEEDVLQVGDK  104 (296)
Q Consensus        25 ~~~p~~~~~~~~~~evlvkv~~~~i~~~D~~~~~g~~~~~~~~p~~~G~e~~G~V~~v~~~~~~~~~~g~~v~~~~~Gd~  104 (296)
                      .|.|.+.++     +|+||+.++++|+.|+..+.|.+.....+|.++|||++|+|+..          +  +..|++||+
T Consensus        19 ~~~p~~~~~-----~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~V~~~----------~--~~~~~~Gd~   81 (323)
T TIGR02823        19 LDLSDLPEG-----DVLIKVAYSSLNYKDALAITGKGGVVRSYPMIPGIDAAGTVVSS----------E--DPRFREGDE   81 (323)
T ss_pred             cCCCCCCCC-----eEEEEEEEEEcCHHHHHHHcCCCCCCCCCCccceeeeEEEEEec----------C--CCCCCCCCE
Confidence            677788888     99999999999999999998876543456889999999999875          3  457999999


Q ss_pred             EEEecC----CCCCcccceEeeeCCceEECCCCCCHHHHhhhccHHHHHHHHHHHHc--CCCCCc-EEEEEcCCCcHHHH
Q psy1959         105 VLALNK----ELLHGFSDQCVVHTNDVFKIPEKMTFEHAASLADSYSTAQIVFSRHA--KLKEKQ-TVLVTAAGGGLGLA  177 (296)
Q Consensus       105 V~~~~~----~~~g~~~~~~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~l~~~~--~~~~g~-~vlI~Ga~g~vG~a  177 (296)
                      |++...    ...|+|++|+.++.+.++++|+++++++++.++..+.+||.++....  .+.+++ +++|+|++|.+|++
T Consensus        82 V~~~~~~~~~~~~g~~~~~~~~~~~~~~~iP~~~~~~~aa~~~~~~~ta~~~~~~~~~~~~~~~~~~vlI~g~~g~vg~~  161 (323)
T TIGR02823        82 VIVTGYGLGVSHDGGYSQYARVPADWLVPLPEGLSLREAMALGTAGFTAALSVMALERNGLTPEDGPVLVTGATGGVGSL  161 (323)
T ss_pred             EEEccCCCCCCCCccceEEEEEchhheEECCCCCCHHHhhhhhhhHHHHHHHHHHhhhcCCCCCCceEEEEcCCcHHHHH
Confidence            998741    12489999999999999999999999999999999999988875443  378898 99999999999999


Q ss_pred             HHHHHHHhCCCEEEEEeCCcchHHHHHhcCCcEEEEcCCchhHHHHHHHHhCCCcccEEEECCCCccHHHHHHHhhccCc
Q psy1959         178 AVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNKVLEVSGGKYANVVFEAVGGEDKTDLIRQKGAWAA  257 (296)
Q Consensus       178 a~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~g~d~vld~~g~~~~~~~~~~lg~~~g  257 (296)
                      ++++| +.+|++++++++++++.+.++++|++.+++..+ .+.  .+.....+ ++|+++|++|++.+..+++++ +.+|
T Consensus       162 ~~~la-~~~G~~vi~~~~~~~~~~~~~~~g~~~~~~~~~-~~~--~~~~~~~~-~~d~vld~~g~~~~~~~~~~l-~~~G  235 (323)
T TIGR02823       162 AVAIL-SKLGYEVVASTGKAEEEDYLKELGASEVIDRED-LSP--PGKPLEKE-RWAGAVDTVGGHTLANVLAQL-KYGG  235 (323)
T ss_pred             HHHHH-HHcCCeEEEEeCCHHHHHHHHhcCCcEEEcccc-HHH--HHHHhcCC-CceEEEECccHHHHHHHHHHh-CCCC
Confidence            99999 678999999988889999999999987777644 222  34444433 599999999998889999999 7777


Q ss_pred             eEEeec-----------ccceeeeeEEeccc
Q psy1959         258 LTFTNE-----------KSLVNKVLEVSGGK  277 (296)
Q Consensus       258 ~~~~~~-----------~~~~~k~~~i~g~~  277 (296)
                      ++....           ..++.+++++.+..
T Consensus       236 ~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~  266 (323)
T TIGR02823       236 AVAACGLAGGPDLPTTVLPFILRGVSLLGID  266 (323)
T ss_pred             EEEEEcccCCCCccccHHHHhhcceEEEEEe
Confidence            663321           22336677777643

This model represents a subfamily of pfam00107 as defined by Pfam, a superfamily in which some members are zinc-binding medium-chain alcohol dehydrogenases while others are quinone oxidoreductases with no bound zinc. This subfamily includes proteins studied crystallographically for insight into function: YhdH from Escherichia coli and YhfP from Bacillus subtilis. Members bind NADPH or NAD, but not zinc.

>PRK13771 putative alcohol dehydrogenase; Provisional

Probab=99.96  E-value=8e-28  Score=219.49  Aligned_cols=222  Identities=27%  Similarity=0.329  Sum_probs=187.6

Q ss_pred             cceEEecCCCCC-----CCCCCCCCCCCCCCcEEEEeeeeecChhhHHHHcCCCCCCCCCCCcCCCceeEEEEEEccCCC
Q psy1959          13 SDLLLYNGSGDA-----KPTLPLVPGFEFSGTIIEKKMMTRINSSDLLLYNGSGDAKPTLPLVPGFEFSGTVIEVADTKS   87 (296)
Q Consensus        13 ~~~~~~~~~~~~-----~~~p~~~~~~~~~~evlvkv~~~~i~~~D~~~~~g~~~~~~~~p~~~G~e~~G~V~~v~~~~~   87 (296)
                      |+++++.++++.     .|.|.+.++     |++||+.++++|+.|+....|.++. .++|.++|||++|+|+++     
T Consensus         1 m~a~~~~~~~~~~~~~~~~~~~~~~~-----~v~V~v~~~~i~~~d~~~~~g~~~~-~~~~~~~g~e~~G~v~~~-----   69 (334)
T PRK13771          1 MKAVILPGFKQGYRIEEVPDPKPGKD-----EVVIKVNYAGLCYRDLLQLQGFYPR-MKYPVILGHEVVGTVEEV-----   69 (334)
T ss_pred             CeeEEEcCCCCCcEEEeCCCCCCCCC-----eEEEEEEEEeechhhHHHhcCCCCC-CCCCeeccccceEEEEEe-----
Confidence            567777777663     577788888     9999999999999999988886643 355789999999999999     


Q ss_pred             CCCCCCCCCCCCCCCCEEEEecC-------------------------CCCCcccceEeeeCCceEECCCCCCHHHHhhh
Q psy1959          88 SSTEEDDEEDVLQVGDKVLALNK-------------------------ELLHGFSDQCVVHTNDVFKIPEKMTFEHAASL  142 (296)
Q Consensus        88 ~~~~~g~~v~~~~~Gd~V~~~~~-------------------------~~~g~~~~~~~v~~~~~~~iP~~~~~~~aa~l  142 (296)
                           |+++..+++||+|++...                         +..|+|++|+.++.+.++++|+++++.+++.+
T Consensus        70 -----g~~~~~~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~~~~~~~a~l  144 (334)
T PRK13771         70 -----GENVKGFKPGDRVASLLYAPDGTCEYCRSGEEAYCKNRLGYGEELDGFFAEYAKVKVTSLVKVPPNVSDEGAVIV  144 (334)
T ss_pred             -----CCCCccCCCCCEEEECCCCCCcCChhhcCCCcccCccccccccccCceeeeeeecchhceEECCCCCCHHHhhcc
Confidence                 998888999999998641                         11489999999999999999999999999999


Q ss_pred             ccHHHHHHHHHHHHcCCCCCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCcEEEEcCCchhHHH
Q psy1959         143 ADSYSTAQIVFSRHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVN  222 (296)
Q Consensus       143 ~~~~~ta~~~l~~~~~~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  222 (296)
                      ..++.+||+++... .++++++++|+|++|.+|++++++| +..|++|+++++++++.+.++++ ++.+++.+   ++.+
T Consensus       145 ~~~~~~a~~~~~~~-~~~~~~~vlI~g~~g~~g~~~~~la-~~~g~~vi~~~~~~~~~~~~~~~-~~~~~~~~---~~~~  218 (334)
T PRK13771        145 PCVTGMVYRGLRRA-GVKKGETVLVTGAGGGVGIHAIQVA-KALGAKVIAVTSSESKAKIVSKY-ADYVIVGS---KFSE  218 (334)
T ss_pred             cchHHHHHHHHHhc-CCCCCCEEEEECCCccHHHHHHHHH-HHcCCEEEEEeCCHHHHHHHHHH-HHHhcCch---hHHH
Confidence            99999999999665 8999999999999999999999999 67899999999999999988877 55544442   3444


Q ss_pred             HHHHHhCCCcccEEEECCCCccHHHHHHHhhccCceEE
Q psy1959         223 KVLEVSGGKYANVVFEAVGGEDKTDLIRQKGAWAALTF  260 (296)
Q Consensus       223 ~i~~~~~~~g~d~vld~~g~~~~~~~~~~lg~~~g~~~  260 (296)
                      .+++.  + ++|+++||+|+..+..+++++ +.+|++.
T Consensus       219 ~v~~~--~-~~d~~ld~~g~~~~~~~~~~l-~~~G~~v  252 (334)
T PRK13771        219 EVKKI--G-GADIVIETVGTPTLEESLRSL-NMGGKII  252 (334)
T ss_pred             HHHhc--C-CCcEEEEcCChHHHHHHHHHH-hcCCEEE
Confidence            55553  2 699999999998889999999 7777764

>TIGR01751 crot-CoA-red crotonyl-CoA reductase

Probab=99.96  E-value=1.6e-27  Score=223.13  Aligned_cols=232  Identities=24%  Similarity=0.318  Sum_probs=191.0

Q ss_pred             CcceEEecC--CCCC--------CCCCCCCCCCCCCCcEEEEeeeeecChhhHHHHcCCCCC---------CCCCC-CcC
Q psy1959          12 SSDLLLYNG--SGDA--------KPTLPLVPGFEFSGTIIEKKMMTRINSSDLLLYNGSGDA---------KPTLP-LVP   71 (296)
Q Consensus        12 ~~~~~~~~~--~~~~--------~~~p~~~~~~~~~~evlvkv~~~~i~~~D~~~~~g~~~~---------~~~~p-~~~   71 (296)
                      .|+++++..  .+++        .|.|.|.++     +|+||+.++++|+.|.+...+....         ....| .++
T Consensus         7 ~~~a~~~~~~~~~~~~~~~~~~~~~~p~l~~~-----evlV~v~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~   81 (398)
T TIGR01751         7 TMYAFAIREERDGDPRQAIQLEVVPVPELGPG-----EVLVAVMAAGVNYNNVWAALGEPVSTFAFLRKYGRDDLPFHII   81 (398)
T ss_pred             hhhheEEecccCCCcccceEEeecCCCCCCCC-----eEEEEEEEEecCchhhhhhcCCccchhhhhcccCCCCCCceec
Confidence            478888854  3322        577777788     9999999999999998876553210         00123 379


Q ss_pred             CCceeEEEEEEccCCCCCCCCCCCCCCCCCCCEEEEecC--------------------------CCCCcccceEeeeCC
Q psy1959          72 GFEFSGTVIEVADTKSSSTEEDDEEDVLQVGDKVLALNK--------------------------ELLHGFSDQCVVHTN  125 (296)
Q Consensus        72 G~e~~G~V~~v~~~~~~~~~~g~~v~~~~~Gd~V~~~~~--------------------------~~~g~~~~~~~v~~~  125 (296)
                      |||++|+|+++          |+++..+++||+|++...                          ...|+|+||+.++.+
T Consensus        82 G~e~~G~V~~v----------G~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~g~~ae~~~v~~~  151 (398)
T TIGR01751        82 GSDASGVVWRV----------GPGVTRWKVGDEVVASCLQVDLTAPDGRVGDPMLSSEQRIWGYETNFGSFAEFALVKDY  151 (398)
T ss_pred             ccceEEEEEEe----------CCCCCCCCCCCEEEEccccccCCchhhccCccccccccccccccCCCccceEEEEechH
Confidence            99999999999          999999999999998531                          124899999999999


Q ss_pred             ceEECCCCCCHHHHhhhccHHHHHHHHHHH--HcCCCCCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHH
Q psy1959         126 DVFKIPEKMTFEHAASLADSYSTAQIVFSR--HAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLI  203 (296)
Q Consensus       126 ~~~~iP~~~~~~~aa~l~~~~~ta~~~l~~--~~~~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~  203 (296)
                      .++++|++++.++++.+..++.+||+++..  .+++.+|++++|+|++|++|++++++| +.+|++++++++++++.+.+
T Consensus       152 ~~~~vP~~l~~~~aa~~~~~~~ta~~al~~~~~~~~~~g~~vlV~Ga~g~vG~~ai~~a-k~~G~~vi~~~~~~~~~~~~  230 (398)
T TIGR01751       152 QLMPKPKHLTWEEAACPGLTGATAYRQLVGWNPATVKPGDNVLIWGAAGGLGSYATQLA-RAGGGNPVAVVSSPEKAEYC  230 (398)
T ss_pred             HeEECCCCCCHHHHhhccchHHHHHHHHhhhhccCCCCCCEEEEEcCCcHHHHHHHHHH-HHcCCeEEEEcCCHHHHHHH
Confidence            999999999999999999999999999854  477899999999999999999999999 67899999999899999999


Q ss_pred             HhcCCcEEEEcCCc---------------------hhHHHHHHHHhCCCcccEEEECCCCccHHHHHHHhhccCceEE
Q psy1959         204 RQKGAWAALTFTNE---------------------KSLVNKVLEVSGGKYANVVFEAVGGEDKTDLIRQKGAWAALTF  260 (296)
Q Consensus       204 ~~~g~~~~~~~~~~---------------------~~~~~~i~~~~~~~g~d~vld~~g~~~~~~~~~~lg~~~g~~~  260 (296)
                      +++|++.++++++.                     ..+.+.+.+.++++++|++|||+|...+..+++++ +.+|.+.
T Consensus       231 ~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~d~vld~~g~~~~~~~~~~l-~~~G~~v  307 (398)
T TIGR01751       231 RELGAEAVIDRNDFGHWGRLPDLNTQAPKEWTKSFKRFGKRIRELTGGEDPDIVFEHPGRATFPTSVFVC-RRGGMVV  307 (398)
T ss_pred             HHcCCCEEecCCCcchhhccccccccccchhhhcchhHHHHHHHHcCCCCceEEEECCcHHHHHHHHHhh-ccCCEEE
Confidence            99999888876431                     12445677777777899999999988889999999 7777663

The enzyme modelled by this alignment is responsible for the conversion of crotonyl-CoA reductase to butyryl-CoA. In serine cycle methylotrophic bacteria this enzyme is involved in the process of acetyl-CoA to glyoxylate. In other bacteria the enzyme is used to produce butyrate for incorporation into polyketides such as tylosin from Streptomyces fradiae and coronatine from Pseudomonas syringae.

>cd05285 sorbitol_DH Sorbitol dehydrogenase

Probab=99.96  E-value=1.3e-27  Score=219.23  Aligned_cols=215  Identities=24%  Similarity=0.312  Sum_probs=180.3

Q ss_pred             CCCCCCCCCCCCCCcEEEEeeeeecChhhHHHHcCC-CCC-CCCCCCcCCCceeEEEEEEccCCCCCCCCCCCCCCCCCC
Q psy1959          25 KPTLPLVPGFEFSGTIIEKKMMTRINSSDLLLYNGS-GDA-KPTLPLVPGFEFSGTVIEVADTKSSSTEEDDEEDVLQVG  102 (296)
Q Consensus        25 ~~~p~~~~~~~~~~evlvkv~~~~i~~~D~~~~~g~-~~~-~~~~p~~~G~e~~G~V~~v~~~~~~~~~~g~~v~~~~~G  102 (296)
                      .|.|.|.++     ||+||+.++++|+.|+..+.+. ... ...+|.++|+|++|+|+++          |+++.++++|
T Consensus        15 ~~~~~l~~~-----~vlV~v~~~~l~~~d~~~~~~~~~~~~~~~~~~~~g~e~~G~V~~v----------G~~v~~~~~G   79 (343)
T cd05285          15 RPIPEPGPG-----EVLVRVRAVGICGSDVHYYKHGRIGDFVVKEPMVLGHESAGTVVAV----------GSGVTHLKVG   79 (343)
T ss_pred             CCCCCCCCC-----eEEEEEEEeeEccccHHHHccCCCcccCCCCCcccCcceeEEEEee----------CCCCCCCCCC
Confidence            466667778     9999999999999999876432 111 1235778999999999999          9999999999


Q ss_pred             CEEEEec------------------------C--CCCCcccceEeeeCCceEECCCCCCHHHHhhhccHHHHHHHHHHHH
Q psy1959         103 DKVLALN------------------------K--ELLHGFSDQCVVHTNDVFKIPEKMTFEHAASLADSYSTAQIVFSRH  156 (296)
Q Consensus       103 d~V~~~~------------------------~--~~~g~~~~~~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~l~~~  156 (296)
                      |+|++..                        .  ...|+|++|++++.+.++++|+++++++++.+ .++++||+++ ..
T Consensus        80 d~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~lP~~~~~~~aa~~-~~~~~a~~~~-~~  157 (343)
T cd05285          80 DRVAIEPGVPCRTCEFCKSGRYNLCPDMRFAATPPVDGTLCRYVNHPADFCHKLPDNVSLEEGALV-EPLSVGVHAC-RR  157 (343)
T ss_pred             CEEEEccccCCCCChhHhCcCcccCcCccccccccCCCceeeeEEecHHHcEECcCCCCHHHhhhh-hHHHHHHHHH-Hh
Confidence            9998621                        0  12489999999999999999999999999866 6889999997 88


Q ss_pred             cCCCCCcEEEEEcCCCcHHHHHHHHHHHhCCCE-EEEEeCCcchHHHHHhcCCcEEEEcCCchh---HHHHHHHHhCCCc
Q psy1959         157 AKLKEKQTVLVTAAGGGLGLAAVDMATKIYKAK-VIGVCNSEDKTDLIRQKGAWAALTFTNEKS---LVNKVLEVSGGKY  232 (296)
Q Consensus       157 ~~~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~~-Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~---~~~~i~~~~~~~g  232 (296)
                      +++++|++++|+|+ |++|++++|+| +.+|++ |+++++++++.+.++++|++.++++++ .+   +.+.+.+.+.+++
T Consensus       158 ~~~~~g~~vlI~g~-g~vG~~a~~la-k~~G~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~-~~~~~~~~~~~~~~~~~~  234 (343)
T cd05285         158 AGVRPGDTVLVFGA-GPIGLLTAAVA-KAFGATKVVVTDIDPSRLEFAKELGATHTVNVRT-EDTPESAEKIAELLGGKG  234 (343)
T ss_pred             cCCCCCCEEEEECC-CHHHHHHHHHH-HHcCCcEEEEECCCHHHHHHHHHcCCcEEecccc-ccchhHHHHHHHHhCCCC
Confidence            99999999999875 99999999999 568997 888988999999999999988888765 44   3677777777778


Q ss_pred             ccEEEECCCCc-cHHHHHHHhhccCceEE
Q psy1959         233 ANVVFEAVGGE-DKTDLIRQKGAWAALTF  260 (296)
Q Consensus       233 ~d~vld~~g~~-~~~~~~~~lg~~~g~~~  260 (296)
                      +|+++||+|+. .+..+++++ +.+|++.
T Consensus       235 ~d~vld~~g~~~~~~~~~~~l-~~~G~~v  262 (343)
T cd05285         235 PDVVIECTGAESCIQTAIYAT-RPGGTVV  262 (343)
T ss_pred             CCEEEECCCCHHHHHHHHHHh-hcCCEEE
Confidence            99999999985 889999999 7777664

Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.

>TIGR02824 quinone_pig3 putative NAD(P)H quinone oxidoreductase, PIG3 family

Probab=99.96  E-value=3e-27  Score=213.30  Aligned_cols=230  Identities=26%  Similarity=0.393  Sum_probs=196.5

Q ss_pred             CCCCCCCCCCCcEEEEeeeeecChhhHHHHcCCCCCCCCCCCcCCCceeEEEEEEccCCCCCCCCCCCCCCCCCCCEEEE
Q psy1959          28 LPLVPGFEFSGTIIEKKMMTRINSSDLLLYNGSGDAKPTLPLVPGFEFSGTVIEVADTKSSSTEEDDEEDVLQVGDKVLA  107 (296)
Q Consensus        28 p~~~~~~~~~~evlvkv~~~~i~~~D~~~~~g~~~~~~~~p~~~G~e~~G~V~~v~~~~~~~~~~g~~v~~~~~Gd~V~~  107 (296)
                      |.+.++     +++||+.++++|+.|.....+.+..+..+|.++|||++|+|+.+          |+++..+++||+|++
T Consensus        23 ~~l~~~-----~v~i~v~~~~~~~~d~~~~~~~~~~~~~~~~~~g~e~~G~v~~v----------g~~~~~~~~Gd~V~~   87 (325)
T TIGR02824        23 PVPKAG-----EVLIRVAAAGVNRPDLLQRAGKYPPPPGASDILGLEVAGEVVAV----------GEGVSRWKVGDRVCA   87 (325)
T ss_pred             CCCCCC-----EEEEEEEEEecCHHHHHHhcCCCCCCCCCCCCccceeEEEEEEe----------CCCCCCCCCCCEEEE
Confidence            346677     99999999999999999888876544456789999999999999          999989999999999


Q ss_pred             ecCCCCCcccceEeeeCCceEECCCCCCHHHHhhhccHHHHHHHHHHHHcCCCCCcEEEEEcCCCcHHHHHHHHHHHhCC
Q psy1959         108 LNKELLHGFSDQCVVHTNDVFKIPEKMTFEHAASLADSYSTAQIVFSRHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYK  187 (296)
Q Consensus       108 ~~~~~~g~~~~~~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vlI~Ga~g~vG~aa~~la~~~~g  187 (296)
                      +..  +|+|++|+.++...++++|+++++.++++++.++.+||.++.+...++++++++|+|++|++|+++++++ +..|
T Consensus        88 ~~~--~~~~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~~~ta~~~~~~~~~~~~~~~vlv~g~~~~~g~~~~~~a-~~~g  164 (325)
T TIGR02824        88 LVA--GGGYAEYVAVPAGQVLPVPEGLSLVEAAALPETFFTVWSNLFQRGGLKAGETVLIHGGASGIGTTAIQLA-KAFG  164 (325)
T ss_pred             ccC--CCcceeEEEecHHHcEeCCCCCCHHHHHhhhHHHHHHHHHHHHhcCCCCCCEEEEEcCcchHHHHHHHHH-HHcC
Confidence            754  4899999999999999999999999999999999999999878899999999999999999999999999 6789


Q ss_pred             CEEEEEeCCcchHHHHHhcCCcEEEEcCCchhHHHHHHHHhCCCcccEEEECCCCccHHHHHHHhhccCceEEeec----
Q psy1959         188 AKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNKVLEVSGGKYANVVFEAVGGEDKTDLIRQKGAWAALTFTNE----  263 (296)
Q Consensus       188 ~~Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~g~d~vld~~g~~~~~~~~~~lg~~~g~~~~~~----  263 (296)
                      ++|+++.+++++.+.++++|.+..++... .++.+.++....++++|++++++|+..+..+++++ +.+|.+....    
T Consensus       165 ~~v~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~l-~~~g~~v~~g~~~~  242 (325)
T TIGR02824       165 ARVFTTAGSDEKCAACEALGADIAINYRE-EDFVEVVKAETGGKGVDVILDIVGGSYLNRNIKAL-ALDGRIVQIGFQGG  242 (325)
T ss_pred             CEEEEEeCCHHHHHHHHHcCCcEEEecCc-hhHHHHHHHHcCCCCeEEEEECCchHHHHHHHHhh-ccCcEEEEEecCCC
Confidence            99999999999999888889877776655 56777777777667899999999988888999999 7777664221    


Q ss_pred             -------ccceeeeeEEeccc
Q psy1959         264 -------KSLVNKVLEVSGGK  277 (296)
Q Consensus       264 -------~~~~~k~~~i~g~~  277 (296)
                             ..++.+++++.+..
T Consensus       243 ~~~~~~~~~~~~~~~~~~~~~  263 (325)
T TIGR02824       243 RKAELDLGPLLAKRLTITGST  263 (325)
T ss_pred             CcCCCChHHHHhcCCEEEEEe
Confidence                   11236777777665

Members of this family are putative quinone oxidoreductases that belong to the broader superfamily (modeled by Pfam pfam00107) of zinc-dependent alcohol (of medium chain length) dehydrogenases and quinone oxiooreductases. The alignment shows no motif of conserved Cys residues as are found in zinc-binding members of the superfamily, and members are likely to be quinone oxidoreductases instead. A member of this family in Homo sapiens, PIG3, is induced by p53 but is otherwise uncharacterized.

>cd08266 Zn_ADH_like1 Alcohol dehydrogenases of the MDR family

Probab=99.96  E-value=3.9e-27  Score=214.28  Aligned_cols=230  Identities=26%  Similarity=0.400  Sum_probs=193.4

Q ss_pred             cceEEecCCCC---C----CCCCCCCCCCCCCCcEEEEeeeeecChhhHHHHcCCCCCCCCCCCcCCCceeEEEEEEccC
Q psy1959          13 SDLLLYNGSGD---A----KPTLPLVPGFEFSGTIIEKKMMTRINSSDLLLYNGSGDAKPTLPLVPGFEFSGTVIEVADT   85 (296)
Q Consensus        13 ~~~~~~~~~~~---~----~~~p~~~~~~~~~~evlvkv~~~~i~~~D~~~~~g~~~~~~~~p~~~G~e~~G~V~~v~~~   85 (296)
                      |+++++..++.   .    .+.|.+.++     +|+|++.++++|++|+..+.|.......+|.++|||++|+|+++   
T Consensus         1 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~-----~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~v~~~---   72 (342)
T cd08266           1 MKAVVIRGHGGPEVLEYGDLPEPEPGPD-----EVLVRVKAAALNHLDLWVRRGMPGIKLPLPHILGSDGAGVVEAV---   72 (342)
T ss_pred             CeEEEEecCCCccceeEeecCCCCCCCC-----eEEEEEEeeecCHHHHHHhcCCCCCCCCCCeecccceEEEEEEe---
Confidence            46666653222   1    344556677     99999999999999999998866543456889999999999999   


Q ss_pred             CCCCCCCCCCCCCCCCCCEEEEecC-------------------------CCCCcccceEeeeCCceEECCCCCCHHHHh
Q psy1959          86 KSSSTEEDDEEDVLQVGDKVLALNK-------------------------ELLHGFSDQCVVHTNDVFKIPEKMTFEHAA  140 (296)
Q Consensus        86 ~~~~~~~g~~v~~~~~Gd~V~~~~~-------------------------~~~g~~~~~~~v~~~~~~~iP~~~~~~~aa  140 (296)
                             |+++..+++||+|++...                         +..|+|++|+.++.+.++++|+++++++++
T Consensus        73 -------G~~~~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~p~~~~~~~a~  145 (342)
T cd08266          73 -------GPGVTNVKPGQRVVIYPGISCGRCEYCLAGRENLCAQYGILGEHVDGGYAEYVAVPARNLLPIPDNLSFEEAA  145 (342)
T ss_pred             -------CCCCCCCCCCCEEEEccccccccchhhccccccccccccccccccCcceeEEEEechHHceeCCCCCCHHHHH
Confidence                   999989999999998621                         124889999999999999999999999999


Q ss_pred             hhccHHHHHHHHHHHHcCCCCCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCcEEEEcCCchhH
Q psy1959         141 SLADSYSTAQIVFSRHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSL  220 (296)
Q Consensus       141 ~l~~~~~ta~~~l~~~~~~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  220 (296)
                      .++.++.+||+++.+..+++++++++|+|+++++|+++++++ +..|++|+++++++++.+.+++.+.+..++..+ .+.
T Consensus       146 ~~~~~~~~a~~~l~~~~~~~~~~~vlI~g~~~~iG~~~~~~~-~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  223 (342)
T cd08266         146 AAPLTFLTAWHMLVTRARLRPGETVLVHGAGSGVGSAAIQIA-KLFGATVIATAGSEDKLERAKELGADYVIDYRK-EDF  223 (342)
T ss_pred             hhhhHHHHHHHHHHHhcCCCCCCEEEEECCCchHHHHHHHHH-HHcCCEEEEEeCCHHHHHHHHHcCCCeEEecCC-hHH
Confidence            999999999999888899999999999999889999999999 678999999999999999998888777776655 566


Q ss_pred             HHHHHHHhCCCcccEEEECCCCccHHHHHHHhhccCceEE
Q psy1959         221 VNKVLEVSGGKYANVVFEAVGGEDKTDLIRQKGAWAALTF  260 (296)
Q Consensus       221 ~~~i~~~~~~~g~d~vld~~g~~~~~~~~~~lg~~~g~~~  260 (296)
                      .+.+.+.+.++++|++++++|...+..+++++ +.+|.+.
T Consensus       224 ~~~~~~~~~~~~~d~~i~~~g~~~~~~~~~~l-~~~G~~v  262 (342)
T cd08266         224 VREVRELTGKRGVDVVVEHVGAATWEKSLKSL-ARGGRLV  262 (342)
T ss_pred             HHHHHHHhCCCCCcEEEECCcHHHHHHHHHHh-hcCCEEE
Confidence            67777777667899999999998889999999 6667663

This group contains proteins related to the zinc-dependent alcohol dehydrogenases. However, while the group has structural zinc site characteristic of these enzymes, it lacks the consensus site for a catalytic zinc. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone

>cd08265 Zn_ADH3 Alcohol dehydrogenases of the MDR family

Probab=99.96  E-value=3e-27  Score=220.40  Aligned_cols=230  Identities=27%  Similarity=0.285  Sum_probs=186.1

Q ss_pred             CcceEEecCCCC---CCCCCCCCCCCCCCCcEEEEeeeeecChhhHHHHcCCC------CCCCCCCCcCCCceeEEEEEE
Q psy1959          12 SSDLLLYNGSGD---AKPTLPLVPGFEFSGTIIEKKMMTRINSSDLLLYNGSG------DAKPTLPLVPGFEFSGTVIEV   82 (296)
Q Consensus        12 ~~~~~~~~~~~~---~~~~p~~~~~~~~~~evlvkv~~~~i~~~D~~~~~g~~------~~~~~~p~~~G~e~~G~V~~v   82 (296)
                      .+...+|..+.-   ..|.|.+.++     +|+||+.++++|++|+..+.+..      +....+|.++|||++|+|+++
T Consensus        28 ~~~~~~~~~~~~~~~~~~~p~~~~~-----ev~V~v~a~gi~~~D~~~~~~~~~~~~~~~~~~~~~~~~g~e~~G~V~~v  102 (384)
T cd08265          28 NLGSKVWRYPELRVEDVPVPNLKPD-----EILIRVKACGICGSDIHLYETDKDGYILYPGLTEFPVVIGHEFSGVVEKT  102 (384)
T ss_pred             cceeEEEeCCCEEEEECCCCCCCCC-----EEEEEEEEEEEcHhHHHHHcCCCCcccccCcccCCCcccccceEEEEEEE
Confidence            344455554321   1677888888     99999999999999998886421      222456889999999999999


Q ss_pred             ccCCCCCCCCCCCCCCCCCCCEEEEec-------------------------CCCCCcccceEeeeCCceEECCCC----
Q psy1959          83 ADTKSSSTEEDDEEDVLQVGDKVLALN-------------------------KELLHGFSDQCVVHTNDVFKIPEK----  133 (296)
Q Consensus        83 ~~~~~~~~~~g~~v~~~~~Gd~V~~~~-------------------------~~~~g~~~~~~~v~~~~~~~iP~~----  133 (296)
                                |+++..|++||+|++..                         ....|+|++|+.++.+.++++|++    
T Consensus       103 ----------G~~v~~~~~Gd~V~~~~~~~~~~~~~c~~~~~~~~~~~~~~g~~~~g~~~~~v~v~~~~~~~lP~~~~~~  172 (384)
T cd08265         103 ----------GKNVKNFEKGDPVTAEEMMWCGMCRACRSGSPNHCKNLKELGFSADGAFAEYIAVNARYAWEINELREIY  172 (384)
T ss_pred             ----------CCCCCCCCCCCEEEECCCCCCCCChhhhCcCcccCCCcceeeecCCCcceeeEEechHHeEECCcccccc
Confidence                      99998999999998611                         011489999999999999999986    


Q ss_pred             ---CCHHHHhhhccHHHHHHHHHHHH-cCCCCCcEEEEEcCCCcHHHHHHHHHHHhCCC-EEEEEeCCcchHHHHHhcCC
Q psy1959         134 ---MTFEHAASLADSYSTAQIVFSRH-AKLKEKQTVLVTAAGGGLGLAAVDMATKIYKA-KVIGVCNSEDKTDLIRQKGA  208 (296)
Q Consensus       134 ---~~~~~aa~l~~~~~ta~~~l~~~-~~~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~-~Vi~~~~~~~~~~~~~~~g~  208 (296)
                         ++.+ +|+++.++++||+++... .++++|++|+|+|+ |++|++++++| +..|+ +|+++++++++.+.++++|+
T Consensus       173 ~~~~~~~-~a~~~~~~~ta~~al~~~~~~~~~g~~VlV~g~-g~vG~~ai~lA-~~~G~~~vi~~~~~~~~~~~~~~~g~  249 (384)
T cd08265         173 SEDKAFE-AGALVEPTSVAYNGLFIRGGGFRPGAYVVVYGA-GPIGLAAIALA-KAAGASKVIAFEISEERRNLAKEMGA  249 (384)
T ss_pred             ccCCCHH-HhhhhhHHHHHHHHHHhhcCCCCCCCEEEEECC-CHHHHHHHHHH-HHcCCCEEEEEcCCHHHHHHHHHcCC
Confidence               4555 556778999999998666 78999999999975 99999999999 67899 79999988889999999999


Q ss_pred             cEEEEcCCc--hhHHHHHHHHhCCCcccEEEECCCCc--cHHHHHHHhhccCceEE
Q psy1959         209 WAALTFTNE--KSLVNKVLEVSGGKYANVVFEAVGGE--DKTDLIRQKGAWAALTF  260 (296)
Q Consensus       209 ~~~~~~~~~--~~~~~~i~~~~~~~g~d~vld~~g~~--~~~~~~~~lg~~~g~~~  260 (296)
                      +.++++++.  .++.+.+++.+.++++|+++|+.|+.  .+..+++++ +.+|++.
T Consensus       250 ~~~v~~~~~~~~~~~~~v~~~~~g~gvDvvld~~g~~~~~~~~~~~~l-~~~G~~v  304 (384)
T cd08265         250 DYVFNPTKMRDCLSGEKVMEVTKGWGADIQVEAAGAPPATIPQMEKSI-AINGKIV  304 (384)
T ss_pred             CEEEcccccccccHHHHHHHhcCCCCCCEEEECCCCcHHHHHHHHHHH-HcCCEEE
Confidence            888877531  26777888888888999999999973  778999999 7777764

This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanedi

>cd08234 threonine_DH_like L-threonine dehydrogenase

Probab=99.96  E-value=3e-27  Score=215.56  Aligned_cols=223  Identities=28%  Similarity=0.387  Sum_probs=187.0

Q ss_pred             cceEEecCCCCC----CCCCCCCCCCCCCCcEEEEeeeeecChhhHHHHcCCCCCCCCCCCcCCCceeEEEEEEccCCCC
Q psy1959          13 SDLLLYNGSGDA----KPTLPLVPGFEFSGTIIEKKMMTRINSSDLLLYNGSGDAKPTLPLVPGFEFSGTVIEVADTKSS   88 (296)
Q Consensus        13 ~~~~~~~~~~~~----~~~p~~~~~~~~~~evlvkv~~~~i~~~D~~~~~g~~~~~~~~p~~~G~e~~G~V~~v~~~~~~   88 (296)
                      |+++++.++++.    .|.|.+.++     ||+||+.++++|+.|.....|.++.  .+|.++|+|++|+|+++      
T Consensus         1 ~~a~~~~~~~~~~~~~~~~~~l~~~-----~v~v~v~~~~l~~~d~~~~~g~~~~--~~p~~~g~~~~G~v~~v------   67 (334)
T cd08234           1 MKALVYEGPGELEVEEVPVPEPGPD-----EVLIKVAACGICGTDLHIYEGEFGA--APPLVPGHEFAGVVVAV------   67 (334)
T ss_pred             CeeEEecCCCceEEEeccCCCCCCC-----eEEEEEEEEeEchhhhHHhcCCCCC--CCCcccccceEEEEEEe------
Confidence            567777766655    577778888     9999999999999999999887653  36889999999999999      


Q ss_pred             CCCCCCCCCCCCCCCEEEEec-------------------------CCCCCcccceEeeeCCceEECCCCCCHHHHhhhc
Q psy1959          89 STEEDDEEDVLQVGDKVLALN-------------------------KELLHGFSDQCVVHTNDVFKIPEKMTFEHAASLA  143 (296)
Q Consensus        89 ~~~~g~~v~~~~~Gd~V~~~~-------------------------~~~~g~~~~~~~v~~~~~~~iP~~~~~~~aa~l~  143 (296)
                          |+++..+++||+|++..                         ....|+|++|+.++.+.++++|++++..+++.+ 
T Consensus        68 ----G~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~lP~~~~~~~aa~~-  142 (334)
T cd08234          68 ----GSKVTGFKVGDRVAVDPNIYCGECFYCRRGRPNLCENLTAVGVTRNGGFAEYVVVPAKQVYKIPDNLSFEEAALA-  142 (334)
T ss_pred             ----CCCCCCCCCCCEEEEcCCcCCCCCccccCcChhhCCCcceeccCCCCcceeEEEecHHHcEECcCCCCHHHHhhh-
Confidence                99999999999998711                         012489999999999999999999999998765 


Q ss_pred             cHHHHHHHHHHHHcCCCCCcEEEEEcCCCcHHHHHHHHHHHhCCCE-EEEEeCCcchHHHHHhcCCcEEEEcCCchhHHH
Q psy1959         144 DSYSTAQIVFSRHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKAK-VIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVN  222 (296)
Q Consensus       144 ~~~~ta~~~l~~~~~~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~~-Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  222 (296)
                      .++.++++++ ..++++++++++|+|+ |.+|++++++| +..|++ |+++++++++.+.++++|++..+++.+ .+...
T Consensus       143 ~~~~~a~~~l-~~~~~~~g~~vlI~g~-g~vg~~~~~la-~~~G~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~  218 (334)
T cd08234         143 EPLSCAVHGL-DLLGIKPGDSVLVFGA-GPIGLLLAQLL-KLNGASRVTVAEPNEEKLELAKKLGATETVDPSR-EDPEA  218 (334)
T ss_pred             hHHHHHHHHH-HhcCCCCCCEEEEECC-CHHHHHHHHHH-HHcCCcEEEEECCCHHHHHHHHHhCCeEEecCCC-CCHHH
Confidence            7888999998 7889999999999985 99999999999 678997 888998999999999999887777655 34433


Q ss_pred             HHHHHhCCCcccEEEECCCC-ccHHHHHHHhhccCceEE
Q psy1959         223 KVLEVSGGKYANVVFEAVGG-EDKTDLIRQKGAWAALTF  260 (296)
Q Consensus       223 ~i~~~~~~~g~d~vld~~g~-~~~~~~~~~lg~~~g~~~  260 (296)
                      .  ..+.++++|+++|++|. ..+..+++++ +.+|.+.
T Consensus       219 ~--~~~~~~~vd~v~~~~~~~~~~~~~~~~l-~~~G~~v  254 (334)
T cd08234         219 Q--KEDNPYGFDVVIEATGVPKTLEQAIEYA-RRGGTVL  254 (334)
T ss_pred             H--HHhcCCCCcEEEECCCChHHHHHHHHHH-hcCCEEE
Confidence            3  34556789999999986 6888999999 7777664

L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.

>cd08271 MDR5 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.96  E-value=4.8e-27  Score=212.55  Aligned_cols=228  Identities=24%  Similarity=0.369  Sum_probs=195.3

Q ss_pred             cceEEecCCC---CC----CCCCCCCCCCCCCCcEEEEeeeeecChhhHHHHcCCCCCCCCCCCcCCCceeEEEEEEccC
Q psy1959          13 SDLLLYNGSG---DA----KPTLPLVPGFEFSGTIIEKKMMTRINSSDLLLYNGSGDAKPTLPLVPGFEFSGTVIEVADT   85 (296)
Q Consensus        13 ~~~~~~~~~~---~~----~~~p~~~~~~~~~~evlvkv~~~~i~~~D~~~~~g~~~~~~~~p~~~G~e~~G~V~~v~~~   85 (296)
                      ||++++.+++   +.    .|.|++.++     +|+||+.++++|++|+....+.... ..+|.++|||++|+|+.+   
T Consensus         1 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~-----~v~v~v~~~~i~~~d~~~~~~~~~~-~~~~~~~g~e~~G~v~~~---   71 (325)
T cd08271           1 MKAWVLPKPGAALQLTLEEIEIPGPGAG-----EVLVKVHAAGLNPVDWKVIAWGPPA-WSYPHVPGVDGAGVVVAV---   71 (325)
T ss_pred             CeeEEEccCCCcceeEEeccCCCCCCCC-----EEEEEEEEEecCHHHHHHhcCCCCC-CCCCcccccceEEEEEEe---
Confidence            6888898888   33    567777788     9999999999999999988775532 234778999999999999   


Q ss_pred             CCCCCCCCCCCCCCCCCCEEEEecCC-CCCcccceEeeeCCceEECCCCCCHHHHhhhccHHHHHHHHHHHHcCCCCCcE
Q psy1959          86 KSSSTEEDDEEDVLQVGDKVLALNKE-LLHGFSDQCVVHTNDVFKIPEKMTFEHAASLADSYSTAQIVFSRHAKLKEKQT  164 (296)
Q Consensus        86 ~~~~~~~g~~v~~~~~Gd~V~~~~~~-~~g~~~~~~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~  164 (296)
                             |+++..+++||+|++.... ..|+|++|+.++.+.++++|++++..+++.+..++.+||.++.+.+++++|++
T Consensus        72 -------G~~~~~~~~Gd~V~~~~~~~~~~~~~s~~~~~~~~~~~ip~~~~~~~~a~~~~~~~~a~~~~~~~~~~~~g~~  144 (325)
T cd08271          72 -------GAKVTGWKVGDRVAYHASLARGGSFAEYTVVDARAVLPLPDSLSFEEAAALPCAGLTAYQALFKKLRIEAGRT  144 (325)
T ss_pred             -------CCCCCcCCCCCEEEeccCCCCCccceeEEEeCHHHeEECCCCCCHHHHHhhhhhHHHHHHHHHHhcCCCCCCE
Confidence                   9999999999999987510 13889999999999999999999999999999999999999988899999999


Q ss_pred             EEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCcEEEEcCCchhHHHHHHHHhCCCcccEEEECCCCcc
Q psy1959         165 VLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNKVLEVSGGKYANVVFEAVGGED  244 (296)
Q Consensus       165 vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~g~d~vld~~g~~~  244 (296)
                      ++|+|++|++|+++++++ +..|++|+++. ++++.+.+.+.|++.+++... .++.+.+.+...++++|++++++++..
T Consensus       145 vlI~g~~~~ig~~~~~~a-~~~g~~v~~~~-~~~~~~~~~~~g~~~~~~~~~-~~~~~~~~~~~~~~~~d~vi~~~~~~~  221 (325)
T cd08271         145 ILITGGAGGVGSFAVQLA-KRAGLRVITTC-SKRNFEYVKSLGADHVIDYND-EDVCERIKEITGGRGVDAVLDTVGGET  221 (325)
T ss_pred             EEEECCccHHHHHHHHHH-HHcCCEEEEEE-cHHHHHHHHHcCCcEEecCCC-ccHHHHHHHHcCCCCCcEEEECCCcHh
Confidence            999999899999999999 67899998887 677888888899887777665 566677777777778999999999977


Q ss_pred             HHHHHHHhhccCceEE
Q psy1959         245 KTDLIRQKGAWAALTF  260 (296)
Q Consensus       245 ~~~~~~~lg~~~g~~~  260 (296)
                      ...+++++ +..|++.
T Consensus       222 ~~~~~~~l-~~~G~~v  236 (325)
T cd08271         222 AAALAPTL-AFNGHLV  236 (325)
T ss_pred             HHHHHHhh-ccCCEEE
Confidence            77899999 7766664

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>cd05286 QOR2 Quinone oxidoreductase (QOR)

Probab=99.96  E-value=7.1e-27  Score=210.02  Aligned_cols=212  Identities=28%  Similarity=0.386  Sum_probs=188.3

Q ss_pred             CCCCCCCCCCCCcEEEEeeeeecChhhHHHHcCCCCCCCCCCCcCCCceeEEEEEEccCCCCCCCCCCCCCCCCCCCEEE
Q psy1959          27 TLPLVPGFEFSGTIIEKKMMTRINSSDLLLYNGSGDAKPTLPLVPGFEFSGTVIEVADTKSSSTEEDDEEDVLQVGDKVL  106 (296)
Q Consensus        27 ~p~~~~~~~~~~evlvkv~~~~i~~~D~~~~~g~~~~~~~~p~~~G~e~~G~V~~v~~~~~~~~~~g~~v~~~~~Gd~V~  106 (296)
                      .|.+.++     +++||+.++++|+.|+....+.++.  .+|.++|||++|+|+.+          |+++.++++||+|+
T Consensus        21 ~~~~~~~-----~v~i~v~~~~i~~~d~~~~~~~~~~--~~~~~~g~e~~G~v~~~----------g~~~~~~~~G~~V~   83 (320)
T cd05286          21 VPEPGPG-----EVLVRNTAIGVNFIDTYFRSGLYPL--PLPFVLGVEGAGVVEAV----------GPGVTGFKVGDRVA   83 (320)
T ss_pred             CCCCCCC-----EEEEEEEEeecCHHHHHHhcCCCCC--CCCccCCcceeEEEEEE----------CCCCCCCCCCCEEE
Confidence            3456677     9999999999999999998876542  45778999999999999          99999999999999


Q ss_pred             EecCCCCCcccceEeeeCCceEECCCCCCHHHHhhhccHHHHHHHHHHHHcCCCCCcEEEEEcCCCcHHHHHHHHHHHhC
Q psy1959         107 ALNKELLHGFSDQCVVHTNDVFKIPEKMTFEHAASLADSYSTAQIVFSRHAKLKEKQTVLVTAAGGGLGLAAVDMATKIY  186 (296)
Q Consensus       107 ~~~~~~~g~~~~~~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vlI~Ga~g~vG~aa~~la~~~~  186 (296)
                      ++..  .|+|++|+.++.+.++++|++++..+++.++..+.++|.++.+..++++|++++|+|++|++|++++++| +.+
T Consensus        84 ~~~~--~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~g~~vlI~g~~g~~g~~~~~~a-~~~  160 (320)
T cd05286          84 YAGP--PGAYAEYRVVPASRLVKLPDGISDETAAALLLQGLTAHYLLRETYPVKPGDTVLVHAAAGGVGLLLTQWA-KAL  160 (320)
T ss_pred             EecC--CCceeEEEEecHHHceeCCCCCCHHHHhhccchHHHHHHHHHHhcCCCCCCEEEEEcCCchHHHHHHHHH-HHc
Confidence            9861  3899999999999999999999999999999999999999988899999999999998899999999999 678


Q ss_pred             CCEEEEEeCCcchHHHHHhcCCcEEEEcCCchhHHHHHHHHhCCCcccEEEECCCCccHHHHHHHhhccCceEE
Q psy1959         187 KAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNKVLEVSGGKYANVVFEAVGGEDKTDLIRQKGAWAALTF  260 (296)
Q Consensus       187 g~~Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~g~d~vld~~g~~~~~~~~~~lg~~~g~~~  260 (296)
                      |++|+++++++++.+.++++|++.+++..+ .++.+.+.+.+.++++|++++|+++.....+++++ +.+|.+.
T Consensus       161 g~~v~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~~~~~~~~~~d~vl~~~~~~~~~~~~~~l-~~~g~~v  232 (320)
T cd05286         161 GATVIGTVSSEEKAELARAAGADHVINYRD-EDFVERVREITGGRGVDVVYDGVGKDTFEGSLDSL-RPRGTLV  232 (320)
T ss_pred             CCEEEEEcCCHHHHHHHHHCCCCEEEeCCc-hhHHHHHHHHcCCCCeeEEEECCCcHhHHHHHHhh-ccCcEEE
Confidence            999999999999999999999888777765 66777788887777899999999998889999999 7777664

Quinone oxidoreductase (QOR) and 2-haloacrylate reductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. 2-haloacrylate reductase, a member of this subgroup, catalyzes the NADPH-dependent reduction of a carbon-carbon double bond in organohalogen compounds. Although similar to QOR, Burkholderia 2-haloacrylate reductase does not act on the quinones 1,4-benzoquinone

>cd08247 AST1_like AST1 is a cytoplasmic protein associated with the periplasmic membrane in yeast

Probab=99.96  E-value=6.7e-27  Score=215.22  Aligned_cols=212  Identities=24%  Similarity=0.317  Sum_probs=172.6

Q ss_pred             CCCCCCCCcEEEEeeeeecChhhHHHHcCCCCCCCCCCCcCCCceeEEEEEEccCCCCCCCCCCCCC-CCCCCCEEEEec
Q psy1959          31 VPGFEFSGTIIEKKMMTRINSSDLLLYNGSGDAKPTLPLVPGFEFSGTVIEVADTKSSSTEEDDEED-VLQVGDKVLALN  109 (296)
Q Consensus        31 ~~~~~~~~evlvkv~~~~i~~~D~~~~~g~~~~~~~~p~~~G~e~~G~V~~v~~~~~~~~~~g~~v~-~~~~Gd~V~~~~  109 (296)
                      .++     +|+||+.++++|++|+....+........|.++|+|++|+|+++          |+++. .|++||+|+++.
T Consensus        27 ~~~-----~v~I~v~~~~~~~~d~~~~~~~~~~~~~~~~~~g~e~~G~V~~v----------G~~v~~~~~~Gd~V~~~~   91 (352)
T cd08247          27 KDN-----EIVVKVHAAALNPVDLKLYNSYTFHFKVKEKGLGRDYSGVIVKV----------GSNVASEWKVGDEVCGIY   91 (352)
T ss_pred             CCC-----eEEEEEEEEecChHhHHHhcccccccccCCCccCceeEEEEEEe----------CcccccCCCCCCEEEEee
Confidence            667     99999999999999998876433221223778999999999999          99998 899999999875


Q ss_pred             CCC---CCcccceEeeeCC----ceEECCCCCCHHHHhhhccHHHHHHHHHHHHc-CCCCCcEEEEEcCCCcHHHHHHHH
Q psy1959         110 KEL---LHGFSDQCVVHTN----DVFKIPEKMTFEHAASLADSYSTAQIVFSRHA-KLKEKQTVLVTAAGGGLGLAAVDM  181 (296)
Q Consensus       110 ~~~---~g~~~~~~~v~~~----~~~~iP~~~~~~~aa~l~~~~~ta~~~l~~~~-~~~~g~~vlI~Ga~g~vG~aa~~l  181 (296)
                      .+.   .|+|++|++++..    .++++|+++++.+++.++.++.+||+++.... ++++|++++|+|+++++|++++++
T Consensus        92 ~~~~~~~g~~~~~~~v~~~~~~~~~~~lP~~l~~~~aa~~~~~~~ta~~~l~~~~~~~~~g~~vlI~ga~~~vg~~~~~~  171 (352)
T cd08247          92 PHPYGGQGTLSQYLLVDPKKDKKSITRKPENISLEEAAAWPLVLGTAYQILEDLGQKLGPDSKVLVLGGSTSVGRFAIQL  171 (352)
T ss_pred             cCCCCCCceeeEEEEEccccccceeEECCCCCCHHHHHHhHHHHHHHHHHHHHhhhccCCCCeEEEECCCchHHHHHHHH
Confidence            221   4899999999987    78999999999999999999999999997777 799999999999999999999999


Q ss_pred             HHHhCCC-EEEEEeCCcchHHHHHhcCCcEEEEcCCchh---HHHHHHHH-hCCCcccEEEECCCC-ccHHHHHHHhhc-
Q psy1959         182 ATKIYKA-KVIGVCNSEDKTDLIRQKGAWAALTFTNEKS---LVNKVLEV-SGGKYANVVFEAVGG-EDKTDLIRQKGA-  254 (296)
Q Consensus       182 a~~~~g~-~Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~---~~~~i~~~-~~~~g~d~vld~~g~-~~~~~~~~~lg~-  254 (296)
                      |+...+. .++++. ++++.+.++++|++.+++.++ .+   +...+.+. ++++++|++|||+|+ .....+++++ + 
T Consensus       172 a~~~~~~~~v~~~~-~~~~~~~~~~~g~~~~i~~~~-~~~~~~~~~~~~~~~~~~~~d~vl~~~g~~~~~~~~~~~l-~~  248 (352)
T cd08247         172 AKNHYNIGTVVGTC-SSRSAELNKKLGADHFIDYDA-HSGVKLLKPVLENVKGQGKFDLILDCVGGYDLFPHINSIL-KP  248 (352)
T ss_pred             HHhcCCcceEEEEe-ChhHHHHHHHhCCCEEEecCC-CcccchHHHHHHhhcCCCCceEEEECCCCHHHHHHHHHHh-Cc
Confidence            9433355 566665 556667888899988887765 33   33444444 336789999999999 6888899999 7 


Q ss_pred             --cCceEE
Q psy1959         255 --WAALTF  260 (296)
Q Consensus       255 --~~g~~~  260 (296)
                        .+|++.
T Consensus       249 ~~~~G~~v  256 (352)
T cd08247         249 KSKNGHYV  256 (352)
T ss_pred             cCCCCEEE
Confidence              777664

This group contains members identified in targeting of yeast membrane proteins ATPase. AST1 is a cytoplasmic protein associated with the periplasmic membrane in yeast, identified as a multicopy suppressor of pma1 mutants which cause temperature sensitive growth arrest due to the inability of ATPase to target to the cell surface. This family is homologous to the medium chain family of dehydrogenases and reductases. Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-termi

>cd08268 MDR2 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.96  E-value=8.9e-27  Score=210.52  Aligned_cols=217  Identities=29%  Similarity=0.399  Sum_probs=189.6

Q ss_pred             CCCCCCCCCCCCCcEEEEeeeeecChhhHHHHcCCCCCCCCCCCcCCCceeEEEEEEccCCCCCCCCCCCCCCCCCCCEE
Q psy1959          26 PTLPLVPGFEFSGTIIEKKMMTRINSSDLLLYNGSGDAKPTLPLVPGFEFSGTVIEVADTKSSSTEEDDEEDVLQVGDKV  105 (296)
Q Consensus        26 ~~p~~~~~~~~~~evlvkv~~~~i~~~D~~~~~g~~~~~~~~p~~~G~e~~G~V~~v~~~~~~~~~~g~~v~~~~~Gd~V  105 (296)
                      +.|.+.++     +++|++.++++|+.|.....|.+.....+|.++|||++|+|+.+          |+++.++++||+|
T Consensus        21 ~~~~~~~~-----~v~i~v~~~~~~~~d~~~~~~~~~~~~~~~~~~g~e~~G~v~~~----------G~~~~~~~~Gd~V   85 (328)
T cd08268          21 PVPAPGAG-----EVLIRVEAIGLNRADAMFRRGAYIEPPPLPARLGYEAAGVVEAV----------GAGVTGFAVGDRV   85 (328)
T ss_pred             CCCCCCCC-----eEEEEEEEEecChHHhheeccccCCCCCCCCCCCcceEEEEEee----------CCCCCcCCCCCEE
Confidence            44556777     99999999999999999887766544556889999999999999          9999899999999


Q ss_pred             EEecC---CCCCcccceEeeeCCceEECCCCCCHHHHhhhccHHHHHHHHHHHHcCCCCCcEEEEEcCCCcHHHHHHHHH
Q psy1959         106 LALNK---ELLHGFSDQCVVHTNDVFKIPEKMTFEHAASLADSYSTAQIVFSRHAKLKEKQTVLVTAAGGGLGLAAVDMA  182 (296)
Q Consensus       106 ~~~~~---~~~g~~~~~~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vlI~Ga~g~vG~aa~~la  182 (296)
                      +++..   ...|++++|+.++.+.++++|+++++++++.++.++.+||.++.....+.++++++|+|++|++|+++++++
T Consensus        86 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~vli~g~~~~~g~~~~~~~  165 (328)
T cd08268          86 SVIPAADLGQYGTYAEYALVPAAAVVKLPDGLSFVEAAALWMQYLTAYGALVELAGLRPGDSVLITAASSSVGLAAIQIA  165 (328)
T ss_pred             EeccccccCCCccceEEEEechHhcEeCCCCCCHHHHHHhhhHHHHHHHHHHHhcCCCCCCEEEEecCccHHHHHHHHHH
Confidence            98742   124889999999999999999999999999999999999999988889999999999999999999999999


Q ss_pred             HHhCCCEEEEEeCCcchHHHHHhcCCcEEEEcCCchhHHHHHHHHhCCCcccEEEECCCCccHHHHHHHhhccCceEE
Q psy1959         183 TKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNKVLEVSGGKYANVVFEAVGGEDKTDLIRQKGAWAALTF  260 (296)
Q Consensus       183 ~~~~g~~Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~g~d~vld~~g~~~~~~~~~~lg~~~g~~~  260 (296)
                       +..|++++++++++++.+.++++|.+.+++.+. .+..+.+.+...++++|+++++.|+.....+++++ +.+|.+.
T Consensus       166 -~~~g~~v~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~~~~~~~~~~d~vi~~~~~~~~~~~~~~l-~~~g~~v  240 (328)
T cd08268         166 -NAAGATVIATTRTSEKRDALLALGAAHVIVTDE-EDLVAEVLRITGGKGVDVVFDPVGGPQFAKLADAL-APGGTLV  240 (328)
T ss_pred             -HHcCCEEEEEcCCHHHHHHHHHcCCCEEEecCC-ccHHHHHHHHhCCCCceEEEECCchHhHHHHHHhh-ccCCEEE
Confidence             678999999999999999998889877777765 56667777777667899999999998888999999 7777664

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>cd08270 MDR4 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.96  E-value=5.1e-27  Score=211.16  Aligned_cols=201  Identities=24%  Similarity=0.330  Sum_probs=172.7

Q ss_pred             CCCCCCCCCCCCCCcEEEEeeeeecChhhHHHHcCCCCCCCCCCCcCCCceeEEEEEEccCCCCCCCCCCCCCCCCCCCE
Q psy1959          25 KPTLPLVPGFEFSGTIIEKKMMTRINSSDLLLYNGSGDAKPTLPLVPGFEFSGTVIEVADTKSSSTEEDDEEDVLQVGDK  104 (296)
Q Consensus        25 ~~~p~~~~~~~~~~evlvkv~~~~i~~~D~~~~~g~~~~~~~~p~~~G~e~~G~V~~v~~~~~~~~~~g~~v~~~~~Gd~  104 (296)
                      .|.|.+.++     ||+||+.++++|+.|.....+.     ..|.++|+|++|+|+++          |+++..|++||+
T Consensus        19 ~~~p~~~~~-----ev~v~v~~~~i~~~d~~~~~~~-----~~~~~~g~e~~G~v~~~----------G~~v~~~~~Gd~   78 (305)
T cd08270          19 VPDPQPAPH-----EALVRVAAISLNRGELKFAAER-----PDGAVPGWDAAGVVERA----------AADGSGPAVGAR   78 (305)
T ss_pred             cCCCCCCCC-----EEEEEEEEEecCHHHHHhhccC-----CCCCcccceeEEEEEEe----------CCCCCCCCCCCE
Confidence            456667778     9999999999999999877621     23678999999999999          999999999999


Q ss_pred             EEEecCCCCCcccceEeeeCCceEECCCCCCHHHHhhhccHHHHHHHHHHHHcCCCCCcEEEEEcCCCcHHHHHHHHHHH
Q psy1959         105 VLALNKELLHGFSDQCVVHTNDVFKIPEKMTFEHAASLADSYSTAQIVFSRHAKLKEKQTVLVTAAGGGLGLAAVDMATK  184 (296)
Q Consensus       105 V~~~~~~~~g~~~~~~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vlI~Ga~g~vG~aa~~la~~  184 (296)
                      |+++..  .|+|++|++++.+.++++|++++++++++++..+.+||+++.+.... +|++++|+|++|++|++++++| +
T Consensus        79 V~~~~~--~g~~~~~~~v~~~~~~~ip~~~~~~~a~~~~~~~~ta~~~~~~~~~~-~~~~vli~g~~~~~g~~~~~~a-~  154 (305)
T cd08270          79 VVGLGA--MGAWAELVAVPTGWLAVLPDGVSFAQAATLPVAGVTALRALRRGGPL-LGRRVLVTGASGGVGRFAVQLA-A  154 (305)
T ss_pred             EEEecC--CcceeeEEEEchHHeEECCCCCCHHHHHHhHhHHHHHHHHHHHhCCC-CCCEEEEECCCcHHHHHHHHHH-H
Confidence            999863  48999999999999999999999999999999999999999766655 5999999999999999999999 6


Q ss_pred             hCCCEEEEEeCCcchHHHHHhcCCcEEEEcCCchhHHHHHHHHhCCCcccEEEECCCCccHHHHHHHhhccCceEE
Q psy1959         185 IYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNKVLEVSGGKYANVVFEAVGGEDKTDLIRQKGAWAALTF  260 (296)
Q Consensus       185 ~~g~~Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~g~d~vld~~g~~~~~~~~~~lg~~~g~~~  260 (296)
                      ..|++|+.+++++++.+.++++|++..+....  +       .. +.++|+++|++|+..+..+++++ +.+|++.
T Consensus       155 ~~g~~v~~~~~~~~~~~~~~~~g~~~~~~~~~--~-------~~-~~~~d~vl~~~g~~~~~~~~~~l-~~~G~~v  219 (305)
T cd08270         155 LAGAHVVAVVGSPARAEGLRELGAAEVVVGGS--E-------LS-GAPVDLVVDSVGGPQLARALELL-APGGTVV  219 (305)
T ss_pred             HcCCEEEEEeCCHHHHHHHHHcCCcEEEeccc--c-------cc-CCCceEEEECCCcHHHHHHHHHh-cCCCEEE
Confidence            78999999999999999999999875543322  1       12 24799999999998899999999 7777664

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.96  E-value=3.5e-27  Score=214.09  Aligned_cols=227  Identities=22%  Similarity=0.291  Sum_probs=185.1

Q ss_pred             cceEEecCCCCC----CCCCCCCCCCCCCCcEEEEeeeeecChhhHHHHcCCCCCCCCCCCcCCCceeEEEEEEccCCCC
Q psy1959          13 SDLLLYNGSGDA----KPTLPLVPGFEFSGTIIEKKMMTRINSSDLLLYNGSGDAKPTLPLVPGFEFSGTVIEVADTKSS   88 (296)
Q Consensus        13 ~~~~~~~~~~~~----~~~p~~~~~~~~~~evlvkv~~~~i~~~D~~~~~g~~~~~~~~p~~~G~e~~G~V~~v~~~~~~   88 (296)
                      |+++++.++++.    .|.|+++++     ||+||+.++++|++|.....|.++    +|.++|||++|+|+++      
T Consensus         1 ~~a~~~~~~~~~~~~~~~~p~~~~~-----~vlV~v~a~~i~~~d~~~~~g~~~----~~~~~G~e~~G~Vv~~------   65 (319)
T cd08242           1 MKALVLDGGLDLRVEDLPKPEPPPG-----EALVRVLLAGICNTDLEIYKGYYP----FPGVPGHEFVGIVEEG------   65 (319)
T ss_pred             CeeEEEeCCCcEEEEECCCCCCCCC-----eEEEEEEEEEEccccHHHHcCCCC----CCCccCceEEEEEEEe------
Confidence            567777766554    678888889     999999999999999999988653    4789999999999999      


Q ss_pred             CCCCCCCCCCCCCCCEEEEecC--------------------------CCCCcccceEeeeCCceEECCCCCCHHHHhhh
Q psy1959          89 STEEDDEEDVLQVGDKVLALNK--------------------------ELLHGFSDQCVVHTNDVFKIPEKMTFEHAASL  142 (296)
Q Consensus        89 ~~~~g~~v~~~~~Gd~V~~~~~--------------------------~~~g~~~~~~~v~~~~~~~iP~~~~~~~aa~l  142 (296)
                          |++   +++||+|.....                          ...|+|++|++++.+.++++|++++.++++.+
T Consensus        66 ----G~~---~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~lP~~~~~~~aa~~  138 (319)
T cd08242          66 ----PEA---ELVGKRVVGEINIACGRCEYCRRGLYTHCPNRTVLGIVDRDGAFAEYLTLPLENLHVVPDLVPDEQAVFA  138 (319)
T ss_pred             ----CCC---CCCCCeEEECCCcCCCCChhhhCcCcccCCCCcccCccCCCCceEEEEEechHHeEECcCCCCHHHhhhh
Confidence                876   679999973210                          12589999999999999999999999888754


Q ss_pred             ccHHHHHHHHHHHHcCCCCCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCcEEEEcCCchhHHH
Q psy1959         143 ADSYSTAQIVFSRHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVN  222 (296)
Q Consensus       143 ~~~~~ta~~~l~~~~~~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  222 (296)
                       .++.++|.++ +..+++++++|+|+| +|++|++++|+| +.+|++|++++.++++.+.++++|++..++++. .    
T Consensus       139 -~~~~~~~~~~-~~~~~~~g~~vlV~g-~g~vg~~~~q~a-~~~G~~vi~~~~~~~~~~~~~~~g~~~~~~~~~-~----  209 (319)
T cd08242         139 -EPLAAALEIL-EQVPITPGDKVAVLG-DGKLGLLIAQVL-ALTGPDVVLVGRHSEKLALARRLGVETVLPDEA-E----  209 (319)
T ss_pred             -hHHHHHHHHH-HhcCCCCCCEEEEEC-CCHHHHHHHHHH-HHcCCeEEEEcCCHHHHHHHHHcCCcEEeCccc-c----
Confidence             5666777766 788999999999998 599999999999 678999999999999999999999987776643 1    


Q ss_pred             HHHHHhCCCcccEEEECCCC-ccHHHHHHHhhccCceEEe----------ecccceeeeeEEecc
Q psy1959         223 KVLEVSGGKYANVVFEAVGG-EDKTDLIRQKGAWAALTFT----------NEKSLVNKVLEVSGG  276 (296)
Q Consensus       223 ~i~~~~~~~g~d~vld~~g~-~~~~~~~~~lg~~~g~~~~----------~~~~~~~k~~~i~g~  276 (296)
                           +.+.++|+++|++|+ ..+..+++++ +.+|.+..          +...+..+++++.++
T Consensus       210 -----~~~~~~d~vid~~g~~~~~~~~~~~l-~~~g~~v~~~~~~~~~~~~~~~~~~~~~~i~~~  268 (319)
T cd08242         210 -----SEGGGFDVVVEATGSPSGLELALRLV-RPRGTVVLKSTYAGPASFDLTKAVVNEITLVGS  268 (319)
T ss_pred             -----ccCCCCCEEEECCCChHHHHHHHHHh-hcCCEEEEEcccCCCCccCHHHheecceEEEEE
Confidence                 345689999999998 6788999999 66666632          223456677777765

This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta

>cd08269 Zn_ADH9 Alcohol dehydrogenases of the MDR family

Probab=99.96  E-value=4.7e-27  Score=211.94  Aligned_cols=211  Identities=26%  Similarity=0.300  Sum_probs=179.7

Q ss_pred             CCCCCCCCCCCCCCcEEEEeeeeecChhhHHHH-cCCCCCC-CCCCCcCCCceeEEEEEEccCCCCCCCCCCCCCCCCCC
Q psy1959          25 KPTLPLVPGFEFSGTIIEKKMMTRINSSDLLLY-NGSGDAK-PTLPLVPGFEFSGTVIEVADTKSSSTEEDDEEDVLQVG  102 (296)
Q Consensus        25 ~~~p~~~~~~~~~~evlvkv~~~~i~~~D~~~~-~g~~~~~-~~~p~~~G~e~~G~V~~v~~~~~~~~~~g~~v~~~~~G  102 (296)
                      ++.|++.++     ||+||+.++++|+.|+..+ .|..... +..|.++|+|++|+|+++          |+++..+++|
T Consensus        12 ~~~~~l~~~-----ev~v~v~~~~i~~~d~~~~~~g~~~~~~~~~~~~~g~e~~G~V~~v----------G~~v~~~~~G   76 (312)
T cd08269          12 HPRPTPGPG-----QVLVRVEGCGVCGSDLPAFNQGRPWFVYPAEPGGPGHEGWGRVVAL----------GPGVRGLAVG   76 (312)
T ss_pred             CCCCCCCCC-----eEEEEEEEeeecccchHHHccCCCCcccCCCCcccceeeEEEEEEE----------CCCCcCCCCC
Confidence            567778888     9999999999999999887 6654321 234789999999999999          9999999999


Q ss_pred             CEEEEecCCCCCcccceEeeeCCceEECCCCCCHHHHhhhccHHHHHHHHHHHHcCCCCCcEEEEEcCCCcHHHHHHHHH
Q psy1959         103 DKVLALNKELLHGFSDQCVVHTNDVFKIPEKMTFEHAASLADSYSTAQIVFSRHAKLKEKQTVLVTAAGGGLGLAAVDMA  182 (296)
Q Consensus       103 d~V~~~~~~~~g~~~~~~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vlI~Ga~g~vG~aa~~la  182 (296)
                      |+|+++..   |+|++|+.++.+.++++|+++  ..++.+..++.++|+++. ..+++++++++|+| +|++|++++++|
T Consensus        77 d~V~~~~~---g~~~~~~~v~~~~~~~lP~~~--~~~~~~~~~~~~a~~~~~-~~~~~~~~~vlI~g-~g~vg~~~~~la  149 (312)
T cd08269          77 DRVAGLSG---GAFAEYDLADADHAVPLPSLL--DGQAFPGEPLGCALNVFR-RGWIRAGKTVAVIG-AGFIGLLFLQLA  149 (312)
T ss_pred             CEEEEecC---CcceeeEEEchhheEECCCch--hhhHHhhhhHHHHHHHHH-hcCCCCCCEEEEEC-CCHHHHHHHHHH
Confidence            99999865   899999999999999999998  233322378899999985 88999999999997 599999999999


Q ss_pred             HHhCCCE-EEEEeCCcchHHHHHhcCCcEEEEcCCchhHHHHHHHHhCCCcccEEEECCCC-ccHHHHHHHhhccCceEE
Q psy1959         183 TKIYKAK-VIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNKVLEVSGGKYANVVFEAVGG-EDKTDLIRQKGAWAALTF  260 (296)
Q Consensus       183 ~~~~g~~-Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~g~d~vld~~g~-~~~~~~~~~lg~~~g~~~  260 (296)
                       +..|++ |+++.+++++.+.++++|++.+++.+. .++.+.+.+.+.++++|+++||+|+ ..+..+++++ +.+|.+.
T Consensus       150 -~~~g~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~l~~~~~~~~vd~vld~~g~~~~~~~~~~~l-~~~g~~~  226 (312)
T cd08269         150 -AAAGARRVIAIDRRPARLALARELGATEVVTDDS-EAIVERVRELTGGAGADVVIEAVGHQWPLDLAGELV-AERGRLV  226 (312)
T ss_pred             -HHcCCcEEEEECCCHHHHHHHHHhCCceEecCCC-cCHHHHHHHHcCCCCCCEEEECCCCHHHHHHHHHHh-ccCCEEE
Confidence             668998 999999988999889999977777655 6777888888877899999999987 5789999999 7766664

The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i

>PLN02702 L-idonate 5-dehydrogenase

Probab=99.96  E-value=7.2e-27  Score=216.16  Aligned_cols=245  Identities=22%  Similarity=0.260  Sum_probs=190.2

Q ss_pred             cceEEecCCCCC----CCCCCCCCCCCCCCcEEEEeeeeecChhhHHHHcCCCCC--CCCCCCcCCCceeEEEEEEccCC
Q psy1959          13 SDLLLYNGSGDA----KPTLPLVPGFEFSGTIIEKKMMTRINSSDLLLYNGSGDA--KPTLPLVPGFEFSGTVIEVADTK   86 (296)
Q Consensus        13 ~~~~~~~~~~~~----~~~p~~~~~~~~~~evlvkv~~~~i~~~D~~~~~g~~~~--~~~~p~~~G~e~~G~V~~v~~~~   86 (296)
                      ++++++..++..    .|.|.|.++     ||+||+.++++|++|+..+.+....  ...+|.++|||++|+|+++    
T Consensus        18 ~~~~~~~~~~~l~~~~~~~p~~~~~-----ev~Ikv~~~~i~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~v----   88 (364)
T PLN02702         18 NMAAWLVGVNTLKIQPFKLPPLGPH-----DVRVRMKAVGICGSDVHYLKTMRCADFVVKEPMVIGHECAGIIEEV----   88 (364)
T ss_pred             cceEEEecCCceEEEeccCCCCCCC-----eEEEEEEEEEEchhhhHHHcCCCCccccCCCCcccccceeEEEEEE----
Confidence            455666655554    455667778     9999999999999999988763211  1235789999999999999    


Q ss_pred             CCCCCCCCCCCCCCCCCEEEEec--------------------------CCCCCcccceEeeeCCceEECCCCCCHHHHh
Q psy1959          87 SSSTEEDDEEDVLQVGDKVLALN--------------------------KELLHGFSDQCVVHTNDVFKIPEKMTFEHAA  140 (296)
Q Consensus        87 ~~~~~~g~~v~~~~~Gd~V~~~~--------------------------~~~~g~~~~~~~v~~~~~~~iP~~~~~~~aa  140 (296)
                            |+++.+|++||+|++..                          ....|+|++|+.++...++++|+++++++++
T Consensus        89 ------G~~v~~~~~Gd~V~~~~~~~~~~c~~c~~g~~~~c~~~~~~~~~~~~g~~~~y~~v~~~~~~~~P~~l~~~~aa  162 (364)
T PLN02702         89 ------GSEVKHLVVGDRVALEPGISCWRCNLCKEGRYNLCPEMKFFATPPVHGSLANQVVHPADLCFKLPENVSLEEGA  162 (364)
T ss_pred             ------CCCCCCCCCCCEEEEcCCCCCCCCcchhCcCcccCCCccccCCCCCCCcccceEEcchHHeEECCCCCCHHHHh
Confidence                  99998999999998621                          0114899999999999999999999999887


Q ss_pred             hhccHHHHHHHHHHHHcCCCCCcEEEEEcCCCcHHHHHHHHHHHhCCCE-EEEEeCCcchHHHHHhcCCcEEEEcCC-ch
Q psy1959         141 SLADSYSTAQIVFSRHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKAK-VIGVCNSEDKTDLIRQKGAWAALTFTN-EK  218 (296)
Q Consensus       141 ~l~~~~~ta~~~l~~~~~~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~~-Vi~~~~~~~~~~~~~~~g~~~~~~~~~-~~  218 (296)
                      . ..++.++|+++ +..++.++++++|+|+ |++|++++++| +..|++ ++++++++++.+.++++|++..+++.. ..
T Consensus       163 ~-~~~~~~a~~~~-~~~~~~~g~~vlI~g~-g~vG~~~~~~a-~~~G~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  238 (364)
T PLN02702        163 M-CEPLSVGVHAC-RRANIGPETNVLVMGA-GPIGLVTMLAA-RAFGAPRIVIVDVDDERLSVAKQLGADEIVLVSTNIE  238 (364)
T ss_pred             h-hhHHHHHHHHH-HhcCCCCCCEEEEECC-CHHHHHHHHHH-HHcCCCEEEEECCCHHHHHHHHHhCCCEEEecCcccc
Confidence            4 34666788888 7889999999999975 99999999999 568985 777888888999999999988776532 14


Q ss_pred             hHHHHHHHH--hCCCcccEEEECCCC-ccHHHHHHHhhccCceEEe----------ecccceeeeeEEeccc
Q psy1959         219 SLVNKVLEV--SGGKYANVVFEAVGG-EDKTDLIRQKGAWAALTFT----------NEKSLVNKVLEVSGGK  277 (296)
Q Consensus       219 ~~~~~i~~~--~~~~g~d~vld~~g~-~~~~~~~~~lg~~~g~~~~----------~~~~~~~k~~~i~g~~  277 (296)
                      ++.+.+.+.  ..+.++|++||++|+ ..+..+++++ +.+|++..          ....+..+++++.+++
T Consensus       239 ~~~~~~~~~~~~~~~~~d~vid~~g~~~~~~~~~~~l-~~~G~~v~~g~~~~~~~~~~~~~~~~~~~i~~~~  309 (364)
T PLN02702        239 DVESEVEEIQKAMGGGIDVSFDCVGFNKTMSTALEAT-RAGGKVCLVGMGHNEMTVPLTPAAAREVDVVGVF  309 (364)
T ss_pred             cHHHHHHHHhhhcCCCCCEEEECCCCHHHHHHHHHHH-hcCCEEEEEccCCCCCcccHHHHHhCccEEEEec
Confidence            566665544  234579999999996 7899999999 77776642          1224556777777754

>cd08273 MDR8 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.96  E-value=8.7e-27  Score=212.02  Aligned_cols=211  Identities=25%  Similarity=0.386  Sum_probs=181.0

Q ss_pred             CCCCCCCCCCCCCCcEEEEeeeeecChhhHHHHcCCCCCCCCCCCcCCCceeEEEEEEccCCCCCCCCCCCCCCCCCCCE
Q psy1959          25 KPTLPLVPGFEFSGTIIEKKMMTRINSSDLLLYNGSGDAKPTLPLVPGFEFSGTVIEVADTKSSSTEEDDEEDVLQVGDK  104 (296)
Q Consensus        25 ~~~p~~~~~~~~~~evlvkv~~~~i~~~D~~~~~g~~~~~~~~p~~~G~e~~G~V~~v~~~~~~~~~~g~~v~~~~~Gd~  104 (296)
                      .+.|.|.++     ||+|++.++++|+.|+....|.+.....+|.++|+|++|+|+.+          |+++..+++||+
T Consensus        20 ~~~~~~~~~-----~v~i~v~~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~v~~v----------G~~v~~~~~Gd~   84 (331)
T cd08273          20 ADLPEPAAG-----EVVVKVEASGVSFADVQMRRGLYPDQPPLPFTPGYDLVGRVDAL----------GSGVTGFEVGDR   84 (331)
T ss_pred             cCCCCCCCC-----eEEEEEEEEecCHHHHHHhCCCCCCCCCCCcccccceEEEEEEe----------CCCCccCCCCCE
Confidence            466777788     99999999999999999998876544457889999999999999          999999999999


Q ss_pred             EEEecCCCCCcccceEeeeCCceEECCCCCCHHHHhhhccHHHHHHHHHHHHcCCCCCcEEEEEcCCCcHHHHHHHHHHH
Q psy1959         105 VLALNKELLHGFSDQCVVHTNDVFKIPEKMTFEHAASLADSYSTAQIVFSRHAKLKEKQTVLVTAAGGGLGLAAVDMATK  184 (296)
Q Consensus       105 V~~~~~~~~g~~~~~~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vlI~Ga~g~vG~aa~~la~~  184 (296)
                      |++...  .|+|++|+.++.+.++++|+++++.+++.++.++.+||+++.+..++++|++++|+|++|++|++++++| +
T Consensus        85 V~~~~~--~g~~~~~~~~~~~~~~~~p~~~~~~~a~~~~~~~~ta~~~l~~~~~~~~g~~vlI~g~~g~ig~~~~~~a-~  161 (331)
T cd08273          85 VAALTR--VGGNAEYINLDAKYLVPVPEGVDAAEAVCLVLNYVTAYQMLHRAAKVLTGQRVLIHGASGGVGQALLELA-L  161 (331)
T ss_pred             EEEeCC--CcceeeEEEechHHeEECCCCCCHHHHHhhhhHHHHHHHHHHHhcCCCCCCEEEEECCCcHHHHHHHHHH-H
Confidence            999864  4899999999999999999999999999999999999999988889999999999999999999999999 6


Q ss_pred             hCCCEEEEEeCCcchHHHHHhcCCcEEEEcCCchhHHHHHHHHhCCCcccEEEECCCCccHHHHHHHhhccCceEE
Q psy1959         185 IYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNKVLEVSGGKYANVVFEAVGGEDKTDLIRQKGAWAALTF  260 (296)
Q Consensus       185 ~~g~~Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~g~d~vld~~g~~~~~~~~~~lg~~~g~~~  260 (296)
                      ..|++|++++. +++.+.++++|+.. +.... .++.+.  ... ++++|++++++|+.....+++++ ..+|++.
T Consensus       162 ~~g~~v~~~~~-~~~~~~~~~~g~~~-~~~~~-~~~~~~--~~~-~~~~d~vl~~~~~~~~~~~~~~l-~~~g~~v  230 (331)
T cd08273         162 LAGAEVYGTAS-ERNHAALRELGATP-IDYRT-KDWLPA--MLT-PGGVDVVFDGVGGESYEESYAAL-APGGTLV  230 (331)
T ss_pred             HcCCEEEEEeC-HHHHHHHHHcCCeE-EcCCC-cchhhh--hcc-CCCceEEEECCchHHHHHHHHHh-cCCCEEE
Confidence            78999999997 88888988888643 44433 333332  233 35899999999997799999999 7777664

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>COG2130 Putative NADP-dependent oxidoreductases [General function prediction only]

Probab=99.96  E-value=2.3e-27  Score=205.58  Aligned_cols=228  Identities=20%  Similarity=0.250  Sum_probs=188.1

Q ss_pred             CCCCCCCCCCCCCCcEEEEeeeeecChhhHHHHcCCCCCCCCC--CCcCCCceeEEEEEEccCCCCCCCCCCCCCCCCCC
Q psy1959          25 KPTLPLVPGFEFSGTIIEKKMMTRINSSDLLLYNGSGDAKPTL--PLVPGFEFSGTVIEVADTKSSSTEEDDEEDVLQVG  102 (296)
Q Consensus        25 ~~~p~~~~~~~~~~evlvkv~~~~i~~~D~~~~~g~~~~~~~~--p~~~G~e~~G~V~~v~~~~~~~~~~g~~v~~~~~G  102 (296)
                      .+.|.|+.+     |||+|..|.+++|.    .+|.+...++|  |+-+|...+|.++..  .      .-+..++|++|
T Consensus        32 ~~vp~p~~G-----qvLl~~~ylS~DPy----mRgrm~d~~SY~~P~~lG~~~~gg~V~~--V------v~S~~~~f~~G   94 (340)
T COG2130          32 VDVPEPGEG-----QVLLRTLYLSLDPY----MRGRMSDAPSYAPPVELGEVMVGGTVAK--V------VASNHPGFQPG   94 (340)
T ss_pred             ccCCCCCcC-----ceEEEEEEeccCHH----HeecccCCcccCCCcCCCceeECCeeEE--E------EecCCCCCCCC
Confidence            677888888     99999999999983    44554444443  788888887644433  0      13457789999


Q ss_pred             CEEEEecCCCCCcccceEeeeCCceEECCCCCC--HHHHhhhccHHHHHHHHHHHHcCCCCCcEEEEEcCCCcHHHHHHH
Q psy1959         103 DKVLALNKELLHGFSDQCVVHTNDVFKIPEKMT--FEHAASLADSYSTAQIVFSRHAKLKEKQTVLVTAAGGGLGLAAVD  180 (296)
Q Consensus       103 d~V~~~~~~~~g~~~~~~~v~~~~~~~iP~~~~--~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vlI~Ga~g~vG~aa~~  180 (296)
                      |.|....     +|+||..++.+.+.|++...-  ......|.++..|||.+|.+++++++|++|+|.+|+|++|..+.|
T Consensus        95 D~V~~~~-----GWq~y~i~~~~~l~Kvd~~~~pl~~~LgvLGmpG~TAY~gLl~igqpk~GetvvVSaAaGaVGsvvgQ  169 (340)
T COG2130          95 DIVVGVS-----GWQEYAISDGEGLRKLDPSPAPLSAYLGVLGMPGLTAYFGLLDIGQPKAGETVVVSAAAGAVGSVVGQ  169 (340)
T ss_pred             CEEEecc-----cceEEEeechhhceecCCCCCCcchHHhhcCCchHHHHHHHHHhcCCCCCCEEEEEecccccchHHHH
Confidence            9999874     599999999999999975432  122346889999999999999999999999999999999999999


Q ss_pred             HHHHhCCCEEEEEeCCcchHHHHHh-cCCcEEEEcCCchhHHHHHHHHhCCCcccEEEECCCCccHHHHHHHhhccCceE
Q psy1959         181 MATKIYKAKVIGVCNSEDKTDLIRQ-KGAWAALTFTNEKSLVNKVLEVSGGKYANVVFEAVGGEDKTDLIRQKGAWAALT  259 (296)
Q Consensus       181 la~~~~g~~Vi~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~~~g~d~vld~~g~~~~~~~~~~lg~~~g~~  259 (296)
                      +| ++.|++|+.+..+++|.+++++ +|.|..++|+. +++.+.+.+.+ ++|+|+.||++|++.++.++..| +..+++
T Consensus       170 iA-KlkG~rVVGiaGg~eK~~~l~~~lGfD~~idyk~-~d~~~~L~~a~-P~GIDvyfeNVGg~v~DAv~~~l-n~~aRi  245 (340)
T COG2130         170 IA-KLKGCRVVGIAGGAEKCDFLTEELGFDAGIDYKA-EDFAQALKEAC-PKGIDVYFENVGGEVLDAVLPLL-NLFARI  245 (340)
T ss_pred             HH-HhhCCeEEEecCCHHHHHHHHHhcCCceeeecCc-ccHHHHHHHHC-CCCeEEEEEcCCchHHHHHHHhh-ccccce
Confidence            99 7899999999999999999998 89999999998 79999999987 57999999999999999999999 776666


Q ss_pred             Eeec-----------------ccceeeeeEEecccc
Q psy1959         260 FTNE-----------------KSLVNKVLEVSGGKY  278 (296)
Q Consensus       260 ~~~~-----------------~~~~~k~~~i~g~~~  278 (296)
                      .++.                 ..++.|.+++.|.-.
T Consensus       246 ~~CG~IS~YN~~~~~~gp~~l~~l~~kr~~v~Gfiv  281 (340)
T COG2130         246 PVCGAISQYNAPELPPGPRRLPLLMAKRLRVQGFIV  281 (340)
T ss_pred             eeeeehhhcCCCCCCCCcchhhHHHhhhheeEEEEe
Confidence            3332                 256677788887654

>cd08264 Zn_ADH_like2 Alcohol dehydrogenases of the MDR family

Probab=99.96  E-value=8.1e-27  Score=212.10  Aligned_cols=207  Identities=29%  Similarity=0.397  Sum_probs=173.7

Q ss_pred             CCCCCCCCCCCCCCcEEEEeeeeecChhhHHHHcCCCCCCCCCCCcCCCceeEEEEEEccCCCCCCCCCCCCCCCCCCCE
Q psy1959          25 KPTLPLVPGFEFSGTIIEKKMMTRINSSDLLLYNGSGDAKPTLPLVPGFEFSGTVIEVADTKSSSTEEDDEEDVLQVGDK  104 (296)
Q Consensus        25 ~~~p~~~~~~~~~~evlvkv~~~~i~~~D~~~~~g~~~~~~~~p~~~G~e~~G~V~~v~~~~~~~~~~g~~v~~~~~Gd~  104 (296)
                      .+.|++.++     ||+||+.++++|++|+....+...  ..+|.++|||++|+|+++          |+++..+++||+
T Consensus        19 ~~~~~~~~~-----ev~v~v~~~~i~~~d~~~~~~~~~--~~~~~~~g~e~~G~v~~v----------G~~v~~~~~Gd~   81 (325)
T cd08264          19 VKDPKPGPG-----EVLIRVKMAGVNPVDYNVINAVKV--KPMPHIPGAEFAGVVEEV----------GDHVKGVKKGDR   81 (325)
T ss_pred             ccCCCCCCC-----eEEEEEEEEEechHHHHHHhCCCC--CCCCeecccceeEEEEEE----------CCCCCCCCCCCE
Confidence            345567778     999999999999999988875221  235778999999999999          999999999999


Q ss_pred             EEEecC-------------------------CCCCcccceEeeeCCceEECCCCCCHHHHhhhccHHHHHHHHHHHHcCC
Q psy1959         105 VLALNK-------------------------ELLHGFSDQCVVHTNDVFKIPEKMTFEHAASLADSYSTAQIVFSRHAKL  159 (296)
Q Consensus       105 V~~~~~-------------------------~~~g~~~~~~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~l~~~~~~  159 (296)
                      |++...                         ...|+|++|++++...++++|+++++++++.++.++.+||+++.. +++
T Consensus        82 V~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~l~~-~~~  160 (325)
T cd08264          82 VVVYNRVFDGTCDMCLSGNEMLCRNGGIIGVVSNGGYAEYIVVPEKNLFKIPDSISDELAASLPVAALTAYHALKT-AGL  160 (325)
T ss_pred             EEECCCcCCCCChhhcCCCccccCccceeeccCCCceeeEEEcCHHHceeCCCCCCHHHhhhhhhhhHHHHHHHHh-cCC
Confidence            997521                         024899999999999999999999999999999999999999954 899


Q ss_pred             CCCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCcEEEEcCCchhHHHHHHHHhCCCcccEEEEC
Q psy1959         160 KEKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNKVLEVSGGKYANVVFEA  239 (296)
Q Consensus       160 ~~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~g~d~vld~  239 (296)
                      ++|++++|+|++|++|++++++| +..|++|+++++    .+.++++|++.+++.++   ..+.+.+.+  +++|+++|+
T Consensus       161 ~~g~~vlI~g~~g~vg~~~~~~a-~~~G~~v~~~~~----~~~~~~~g~~~~~~~~~---~~~~l~~~~--~~~d~vl~~  230 (325)
T cd08264         161 GPGETVVVFGASGNTGIFAVQLA-KMMGAEVIAVSR----KDWLKEFGADEVVDYDE---VEEKVKEIT--KMADVVINS  230 (325)
T ss_pred             CCCCEEEEECCCchHHHHHHHHH-HHcCCeEEEEeH----HHHHHHhCCCeeecchH---HHHHHHHHh--CCCCEEEEC
Confidence            99999999999999999999999 678999988863    36777889877776643   245566655  589999999


Q ss_pred             CCCccHHHHHHHhhccCceEE
Q psy1959         240 VGGEDKTDLIRQKGAWAALTF  260 (296)
Q Consensus       240 ~g~~~~~~~~~~lg~~~g~~~  260 (296)
                      +|+..+..+++++ +.+|++.
T Consensus       231 ~g~~~~~~~~~~l-~~~g~~v  250 (325)
T cd08264         231 LGSSFWDLSLSVL-GRGGRLV  250 (325)
T ss_pred             CCHHHHHHHHHhh-ccCCEEE
Confidence            9998899999999 7777664

This group resembles the zinc-dependent alcohol dehydrogenases of the medium chain dehydrogenase family. However, this subgroup does not contain the characteristic catalytic zinc site. Also, it contains an atypical structural zinc-binding pattern: DxxCxxCxxxxxxxC. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the clo

>cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD)

Probab=99.96  E-value=1.5e-26  Score=210.66  Aligned_cols=218  Identities=22%  Similarity=0.209  Sum_probs=184.6

Q ss_pred             cceEEecCCCC-----C----CCCCCCCCCCCCCCcEEEEeeeeecChhhHHHHcCCCCCCCCCCCcCCCceeEEEEEEc
Q psy1959          13 SDLLLYNGSGD-----A----KPTLPLVPGFEFSGTIIEKKMMTRINSSDLLLYNGSGDAKPTLPLVPGFEFSGTVIEVA   83 (296)
Q Consensus        13 ~~~~~~~~~~~-----~----~~~p~~~~~~~~~~evlvkv~~~~i~~~D~~~~~g~~~~~~~~p~~~G~e~~G~V~~v~   83 (296)
                      |+++++.++++     .    .+.|.+.++     ||+||+.++++|++|+..+.|.++. ..+|.++|||++|+|+++ 
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----ev~irv~~~~i~~~d~~~~~g~~~~-~~~~~~~g~e~~G~V~~v-   73 (329)
T cd08298           1 MKAMVLEKPGPIEENPLRLTEVPVPEPGPG-----EVLIKVEACGVCRTDLHIVEGDLPP-PKLPLIPGHEIVGRVEAV-   73 (329)
T ss_pred             CeEEEEecCCCCCCCCceEEeccCCCCCCC-----EEEEEEEEEeccHHHHHHHhCCCCC-CCCCccccccccEEEEEE-
Confidence            56777777662     2    344556677     9999999999999999999887654 456889999999999999 


Q ss_pred             cCCCCCCCCCCCCCCCCCCCEEEEec--------------------------CCCCCcccceEeeeCCceEECCCCCCHH
Q psy1959          84 DTKSSSTEEDDEEDVLQVGDKVLALN--------------------------KELLHGFSDQCVVHTNDVFKIPEKMTFE  137 (296)
Q Consensus        84 ~~~~~~~~~g~~v~~~~~Gd~V~~~~--------------------------~~~~g~~~~~~~v~~~~~~~iP~~~~~~  137 (296)
                               |+++.++++||+|++..                          ....|+|++|+.++.+.++++|+++++.
T Consensus        74 ---------G~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~~~~~  144 (329)
T cd08298          74 ---------GPGVTRFSVGDRVGVPWLGSTCGECRYCRSGRENLCDNARFTGYTVDGGYAEYMVADERFAYPIPEDYDDE  144 (329)
T ss_pred             ---------CCCCCCCcCCCEEEEeccCCCCCCChhHhCcChhhCCCccccccccCCceEEEEEecchhEEECCCCCCHH
Confidence                     99998999999998621                          0024899999999999999999999999


Q ss_pred             HHhhhccHHHHHHHHHHHHcCCCCCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCcEEEEcCCc
Q psy1959         138 HAASLADSYSTAQIVFSRHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNE  217 (296)
Q Consensus       138 ~aa~l~~~~~ta~~~l~~~~~~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~~~~~~~~~  217 (296)
                      +++.+++++.+||+++ +.++++++++++|+|+ |++|++++++| +..|++|+++++++++.+.++++|++..++.+. 
T Consensus       145 ~~~~~~~~~~ta~~~~-~~~~~~~~~~vlV~g~-g~vg~~~~~la-~~~g~~v~~~~~~~~~~~~~~~~g~~~~~~~~~-  220 (329)
T cd08298         145 EAAPLLCAGIIGYRAL-KLAGLKPGQRLGLYGF-GASAHLALQIA-RYQGAEVFAFTRSGEHQELARELGADWAGDSDD-  220 (329)
T ss_pred             HhhHhhhhhHHHHHHH-HhhCCCCCCEEEEECC-cHHHHHHHHHH-HHCCCeEEEEcCChHHHHHHHHhCCcEEeccCc-
Confidence            9999999999999999 8899999999999985 99999999999 668999999999999999999999877776644 


Q ss_pred             hhHHHHHHHHhCCCcccEEEECCCC-ccHHHHHHHhhccCceEEe
Q psy1959         218 KSLVNKVLEVSGGKYANVVFEAVGG-EDKTDLIRQKGAWAALTFT  261 (296)
Q Consensus       218 ~~~~~~i~~~~~~~g~d~vld~~g~-~~~~~~~~~lg~~~g~~~~  261 (296)
                      .          .++++|+++++.+. ..++.+++++ +.+|++..
T Consensus       221 ~----------~~~~vD~vi~~~~~~~~~~~~~~~l-~~~G~~v~  254 (329)
T cd08298         221 L----------PPEPLDAAIIFAPVGALVPAALRAV-KKGGRVVL  254 (329)
T ss_pred             c----------CCCcccEEEEcCCcHHHHHHHHHHh-hcCCEEEE
Confidence            1          24579999998765 6889999999 77777754

These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha

>cd08288 MDR_yhdh Yhdh putative quinone oxidoreductases

Probab=99.96  E-value=1.8e-26  Score=209.53  Aligned_cols=242  Identities=20%  Similarity=0.287  Sum_probs=188.1

Q ss_pred             cceEEecCCCC-------CCCCCCCCCCCCCCCcEEEEeeeeecChhhHHHHcCCCCCCCCCCCcCCCceeEEEEEEccC
Q psy1959          13 SDLLLYNGSGD-------AKPTLPLVPGFEFSGTIIEKKMMTRINSSDLLLYNGSGDAKPTLPLVPGFEFSGTVIEVADT   85 (296)
Q Consensus        13 ~~~~~~~~~~~-------~~~~p~~~~~~~~~~evlvkv~~~~i~~~D~~~~~g~~~~~~~~p~~~G~e~~G~V~~v~~~   85 (296)
                      |+++++++++.       ..|.|.|.++     ||+||+.++++|+.|.....|.+.....+|.++|||++|+|++.   
T Consensus         1 ~~a~~~~~~~~~~~~~~~~~~~p~~~~~-----~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~V~~~---   72 (324)
T cd08288           1 FKALVLEKDDGGTSAELRELDESDLPEG-----DVTVEVHYSTLNYKDGLAITGKGGIVRTFPLVPGIDLAGTVVES---   72 (324)
T ss_pred             CeeEEEeccCCCcceEEEECCCCCCCCC-----eEEEEEEEEecCHHHHHHhcCCccccCCCCCccccceEEEEEeC---
Confidence            45666665542       1677778888     99999999999999999988866433446788999999999874   


Q ss_pred             CCCCCCCCCCCCCCCCCCEEEEecC----CCCCcccceEeeeCCceEECCCCCCHHHHhhhccHHHHHHHHHH--HHcCC
Q psy1959          86 KSSSTEEDDEEDVLQVGDKVLALNK----ELLHGFSDQCVVHTNDVFKIPEKMTFEHAASLADSYSTAQIVFS--RHAKL  159 (296)
Q Consensus        86 ~~~~~~~g~~v~~~~~Gd~V~~~~~----~~~g~~~~~~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~l~--~~~~~  159 (296)
                             +  +..+++||+|+++..    +..|+|++|++++.+.++++|++++.++++.++.++++|+.++.  +....
T Consensus        73 -------~--~~~~~~Gd~V~~~~~~~~~~~~g~~~~~~~v~~~~~~~lp~~~~~~~~~~~~~~~~ta~~~~~~~~~~~~  143 (324)
T cd08288          73 -------S--SPRFKPGDRVVLTGWGVGERHWGGYAQRARVKADWLVPLPEGLSARQAMAIGTAGFTAMLCVMALEDHGV  143 (324)
T ss_pred             -------C--CCCCCCCCEEEECCccCCCCCCCcceeEEEEchHHeeeCCCCCCHHHHhhhhhHHHHHHHHHHHHhhcCc
Confidence                   3  356999999998631    12489999999999999999999999999999999999987764  12344


Q ss_pred             C-CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCcEEEEcCCchhHHHHHHHHhCCCcccEEEE
Q psy1959         160 K-EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNKVLEVSGGKYANVVFE  238 (296)
Q Consensus       160 ~-~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~g~d~vld  238 (296)
                      . ++++++|+|++|++|++++|+| +.+|++|++++.++++.+.++++|++.++++++ .  ...+.....+ ++|.++|
T Consensus       144 ~~~~~~vlI~ga~g~vg~~~~~~A-~~~G~~vi~~~~~~~~~~~~~~~g~~~~~~~~~-~--~~~~~~~~~~-~~~~~~d  218 (324)
T cd08288         144 TPGDGPVLVTGAAGGVGSVAVALL-ARLGYEVVASTGRPEEADYLRSLGASEIIDRAE-L--SEPGRPLQKE-RWAGAVD  218 (324)
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHH-HHCCCeEEEEeCCHHHHHHHHhcCCCEEEEcch-h--hHhhhhhccC-cccEEEE
Confidence            4 6789999999999999999999 678999999999999999999999988887754 2  2244444433 5899999


Q ss_pred             CCCCccHHHHHHHhhccCceEEee-----------cccceeeeeEEeccc
Q psy1959         239 AVGGEDKTDLIRQKGAWAALTFTN-----------EKSLVNKVLEVSGGK  277 (296)
Q Consensus       239 ~~g~~~~~~~~~~lg~~~g~~~~~-----------~~~~~~k~~~i~g~~  277 (296)
                      ++++..+..++..+ +++|.+...           ...++.+++++.+..
T Consensus       219 ~~~~~~~~~~~~~~-~~~g~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~  267 (324)
T cd08288         219 TVGGHTLANVLAQT-RYGGAVAACGLAGGADLPTTVMPFILRGVTLLGID  267 (324)
T ss_pred             CCcHHHHHHHHHHh-cCCCEEEEEEecCCCCCCcchhhhhccccEEEEEE
Confidence            99987777888888 676655321           112336667777653

Yhdh putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catal

>cd05281 TDH Threonine dehydrogenase

Probab=99.96  E-value=1.3e-26  Score=212.40  Aligned_cols=225  Identities=24%  Similarity=0.318  Sum_probs=182.6

Q ss_pred             cceEEecCCCCC-----CCCCCCCCCCCCCCcEEEEeeeeecChhhHHHHcCCC--CCCCCCCCcCCCceeEEEEEEccC
Q psy1959          13 SDLLLYNGSGDA-----KPTLPLVPGFEFSGTIIEKKMMTRINSSDLLLYNGSG--DAKPTLPLVPGFEFSGTVIEVADT   85 (296)
Q Consensus        13 ~~~~~~~~~~~~-----~~~p~~~~~~~~~~evlvkv~~~~i~~~D~~~~~g~~--~~~~~~p~~~G~e~~G~V~~v~~~   85 (296)
                      ||++++..++..     .|.|.|.++     |++||+.++++|+.|+..+.+..  .....+|.++|+|++|+|+.+   
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~-----~v~V~v~~~~~~~~d~~~~~~~~~~~~~~~~~~~~g~e~~G~V~~~---   72 (341)
T cd05281           1 MKAIVKTKAGPGAELVEVPVPKPGPG-----EVLIKVLAASICGTDVHIYEWDEWAQSRIKPPLIFGHEFAGEVVEV---   72 (341)
T ss_pred             CcceEEecCCCceEEEeCCCCCCCCC-----eEEEEEEEEEEcccchHHHcCCCCccccCCCCcccccceEEEEEEE---
Confidence            455555554432     566777888     99999999999999988865532  112345778999999999999   


Q ss_pred             CCCCCCCCCCCCCCCCCCEEEEecC-------------------------CCCCcccceEeeeCCceEECCCCCCHHHHh
Q psy1959          86 KSSSTEEDDEEDVLQVGDKVLALNK-------------------------ELLHGFSDQCVVHTNDVFKIPEKMTFEHAA  140 (296)
Q Consensus        86 ~~~~~~~g~~v~~~~~Gd~V~~~~~-------------------------~~~g~~~~~~~v~~~~~~~iP~~~~~~~aa  140 (296)
                             |+++..+++||+|+++..                         ...|+|++|++++.+.++++|++++.+.+ 
T Consensus        73 -------G~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~v~~~~~~~lP~~~~~~~a-  144 (341)
T cd05281          73 -------GEGVTRVKVGDYVSAETHIVCGKCYQCRTGNYHVCQNTKILGVDTDGCFAEYVVVPEENLWKNDKDIPPEIA-  144 (341)
T ss_pred             -------CCCCCCCCCCCEEEECCccCCCCChHHHCcCcccCcccceEeccCCCcceEEEEechHHcEECcCCCCHHHh-
Confidence                   999989999999998511                         02489999999999999999999998554 


Q ss_pred             hhccHHHHHHHHHHHHcCCCCCcEEEEEcCCCcHHHHHHHHHHHhCCC-EEEEEeCCcchHHHHHhcCCcEEEEcCCchh
Q psy1959         141 SLADSYSTAQIVFSRHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKA-KVIGVCNSEDKTDLIRQKGAWAALTFTNEKS  219 (296)
Q Consensus       141 ~l~~~~~ta~~~l~~~~~~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~-~Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~  219 (296)
                      +++.++.++++++.  ...++|++|+|.|+ |++|++++++| +..|+ +|++++++++|.+.++++|++.+++.+. .+
T Consensus       145 ~~~~~~~~a~~~~~--~~~~~g~~vlV~g~-g~vg~~~~~la-~~~G~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~-~~  219 (341)
T cd05281         145 SIQEPLGNAVHTVL--AGDVSGKSVLITGC-GPIGLMAIAVA-KAAGASLVIASDPNPYRLELAKKMGADVVINPRE-ED  219 (341)
T ss_pred             hhhhHHHHHHHHHH--hcCCCCCEEEEECC-CHHHHHHHHHH-HHcCCcEEEEECCCHHHHHHHHHhCcceeeCccc-cc
Confidence            57788899998874  45679999999875 99999999999 67899 7999988888999999999887777665 56


Q ss_pred             HHHHHHHHhCCCcccEEEECCCC-ccHHHHHHHhhccCceEE
Q psy1959         220 LVNKVLEVSGGKYANVVFEAVGG-EDKTDLIRQKGAWAALTF  260 (296)
Q Consensus       220 ~~~~i~~~~~~~g~d~vld~~g~-~~~~~~~~~lg~~~g~~~  260 (296)
                      +. .+.+..+++++|++||++|+ ..+..+++++ +.+|.+.
T Consensus       220 ~~-~~~~~~~~~~vd~vld~~g~~~~~~~~~~~l-~~~G~~v  259 (341)
T cd05281         220 VV-EVKSVTDGTGVDVVLEMSGNPKAIEQGLKAL-TPGGRVS  259 (341)
T ss_pred             HH-HHHHHcCCCCCCEEEECCCCHHHHHHHHHHh-ccCCEEE
Confidence            66 77887777899999999987 5788999999 7777764

L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.

>cd05195 enoyl_red enoyl reductase of polyketide synthase

Probab=99.95  E-value=2.3e-26  Score=203.78  Aligned_cols=204  Identities=29%  Similarity=0.398  Sum_probs=183.0

Q ss_pred             CcEEEEeeeeecChhhHHHHcCCCCCCCCCCCcCCCceeEEEEEEccCCCCCCCCCCCCCCCCCCCEEEEecCCCCCccc
Q psy1959          38 GTIIEKKMMTRINSSDLLLYNGSGDAKPTLPLVPGFEFSGTVIEVADTKSSSTEEDDEEDVLQVGDKVLALNKELLHGFS  117 (296)
Q Consensus        38 ~evlvkv~~~~i~~~D~~~~~g~~~~~~~~p~~~G~e~~G~V~~v~~~~~~~~~~g~~v~~~~~Gd~V~~~~~~~~g~~~  117 (296)
                      +|++||+.++++|++|+....|.+   ..+|.++|+|++|+|+++          |+++..+++||+|+++..   |+|+
T Consensus         1 ~~v~i~v~~~~~~~~d~~~~~g~~---~~~~~~~g~e~~G~v~~~----------g~~~~~~~~Gd~V~~~~~---g~~~   64 (293)
T cd05195           1 DEVEVEVKAAGLNFRDVLVALGLL---PGDETPLGLECSGIVTRV----------GSGVTGLKVGDRVMGLAP---GAFA   64 (293)
T ss_pred             CceEEEEEEEecCHHHHHHHhCCC---CCCCCccceeeeEEEEee----------cCCccCCCCCCEEEEEec---Cccc
Confidence            389999999999999999998765   245789999999999999          999989999999999865   8999


Q ss_pred             ceEeeeCCceEECCCCCCHHHHhhhccHHHHHHHHHHHHcCCCCCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCc
Q psy1959         118 DQCVVHTNDVFKIPEKMTFEHAASLADSYSTAQIVFSRHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSE  197 (296)
Q Consensus       118 ~~~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~  197 (296)
                      +|+.++.+.++++|++++..+++.++.++.++|.++.+..++++|++++|+|++|++|++++++| +..|++|+++++++
T Consensus        65 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~g~~vlv~g~~g~~g~~~~~~a-~~~g~~v~~~~~~~  143 (293)
T cd05195          65 THVRVDARLVVKIPDSLSFEEAATLPVAYLTAYYALVDLARLQKGESVLIHAAAGGVGQAAIQLA-QHLGAEVFATVGSE  143 (293)
T ss_pred             ceEEechhheEeCCCCCCHHHHhhchHHHHHHHHHHHHHhccCCCCEEEEecCCCHHHHHHHHHH-HHcCCEEEEEeCCH
Confidence            99999999999999999999999999999999999888889999999999998899999999999 67899999999999


Q ss_pred             chHHHHHhcC--CcEEEEcCCchhHHHHHHHHhCCCcccEEEECCCCccHHHHHHHhhccCceEE
Q psy1959         198 DKTDLIRQKG--AWAALTFTNEKSLVNKVLEVSGGKYANVVFEAVGGEDKTDLIRQKGAWAALTF  260 (296)
Q Consensus       198 ~~~~~~~~~g--~~~~~~~~~~~~~~~~i~~~~~~~g~d~vld~~g~~~~~~~~~~lg~~~g~~~  260 (296)
                      ++.+.+++.+  ++..++..+ .++.+.+++.+.++++|++++++|+..+..+++++ +.+|.+.
T Consensus       144 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~vi~~~~~~~~~~~~~~l-~~~g~~v  206 (293)
T cd05195         144 EKREFLRELGGPVDHIFSSRD-LSFADGILRATGGRGVDVVLNSLSGELLRASWRCL-APFGRFV  206 (293)
T ss_pred             HHHHHHHHhCCCcceEeecCc-hhHHHHHHHHhCCCCceEEEeCCCchHHHHHHHhc-ccCceEE
Confidence            9999998887  666777665 56777888887777899999999998899999999 7777664

Putative enoyl reductase of polyketide synthase. Polyketide synthases produce polyketides in step by step mechanism that is similar to fatty acid synthesis. Enoyl reductase reduces a double to single bond. Erythromycin is one example of a polyketide generated by 3 complex enzymes (megasynthases). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase

>TIGR00692 tdh L-threonine 3-dehydrogenase

Probab=99.95  E-value=2.3e-26  Score=210.70  Aligned_cols=215  Identities=24%  Similarity=0.314  Sum_probs=178.3

Q ss_pred             CCCCCCCCCCCCCCcEEEEeeeeecChhhHHHHcCCC--CCCCCCCCcCCCceeEEEEEEccCCCCCCCCCCCCCCCCCC
Q psy1959          25 KPTLPLVPGFEFSGTIIEKKMMTRINSSDLLLYNGSG--DAKPTLPLVPGFEFSGTVIEVADTKSSSTEEDDEEDVLQVG  102 (296)
Q Consensus        25 ~~~p~~~~~~~~~~evlvkv~~~~i~~~D~~~~~g~~--~~~~~~p~~~G~e~~G~V~~v~~~~~~~~~~g~~v~~~~~G  102 (296)
                      .|.|.|.++     ||+||+.++++|+.|...+.+..  ....++|.++|+|++|+|+++          |+++..+++|
T Consensus        16 ~~~p~~~~~-----ev~V~v~~~~~~~~d~~~~~~~~~~~~~~~~~~~~g~e~~G~V~~v----------G~~v~~~~~G   80 (340)
T TIGR00692        16 VPVPEPGPG-----EVLIKVLATSICGTDVHIYNWDEWAQSRIKPPQVVGHEVAGEVVGI----------GPGVEGIKVG   80 (340)
T ss_pred             CCCCCCCCC-----eEEEEEEEEEEcccCHHHHcCCCCCCCCCCCCcccccceEEEEEEE----------CCCCCcCCCC
Confidence            567777888     99999999999999998876541  112245778999999999999          9999999999


Q ss_pred             CEEEEecC-------------------------CCCCcccceEeeeCCceEECCCCCCHHHHhhhccHHHHHHHHHHHHc
Q psy1959         103 DKVLALNK-------------------------ELLHGFSDQCVVHTNDVFKIPEKMTFEHAASLADSYSTAQIVFSRHA  157 (296)
Q Consensus       103 d~V~~~~~-------------------------~~~g~~~~~~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~l~~~~  157 (296)
                      |+|++...                         ...|+|++|++++.+.++++|++++.+.+ +++.++.+|++++  ..
T Consensus        81 d~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~~~~~~a-~~~~~~~~a~~~~--~~  157 (340)
T TIGR00692        81 DYVSVETHIVCGKCYACRRGQYHVCQNTKIFGVDTDGCFAEYAVVPAQNIWKNPKSIPPEYA-TIQEPLGNAVHTV--LA  157 (340)
T ss_pred             CEEEECCcCCCCCChhhhCcChhhCcCcceEeecCCCcceeEEEeehHHcEECcCCCChHhh-hhcchHHHHHHHH--Hc
Confidence            99987310                         02489999999999999999999998655 5778899999886  45


Q ss_pred             CCCCCcEEEEEcCCCcHHHHHHHHHHHhCCCE-EEEEeCCcchHHHHHhcCCcEEEEcCCchhHHHHHHHHhCCCcccEE
Q psy1959         158 KLKEKQTVLVTAAGGGLGLAAVDMATKIYKAK-VIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNKVLEVSGGKYANVV  236 (296)
Q Consensus       158 ~~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~~-Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~g~d~v  236 (296)
                      ..++|++++|.|+ |++|++++|+| +.+|++ |+++++++++.+.++++|++.++++.. .++.+.+.+.++++++|++
T Consensus       158 ~~~~g~~vlI~~~-g~vg~~a~~la-~~~G~~~v~~~~~~~~~~~~~~~~g~~~~v~~~~-~~~~~~l~~~~~~~~~d~v  234 (340)
T TIGR00692       158 GPISGKSVLVTGA-GPIGLMAIAVA-KASGAYPVIVSDPNEYRLELAKKMGATYVVNPFK-EDVVKEVADLTDGEGVDVF  234 (340)
T ss_pred             cCCCCCEEEEECC-CHHHHHHHHHH-HHcCCcEEEEECCCHHHHHHHHHhCCcEEEcccc-cCHHHHHHHhcCCCCCCEE
Confidence            5789999999875 99999999999 668996 888888888999999999977777765 6777788888777889999


Q ss_pred             EECCCC-ccHHHHHHHhhccCceEEe
Q psy1959         237 FEAVGG-EDKTDLIRQKGAWAALTFT  261 (296)
Q Consensus       237 ld~~g~-~~~~~~~~~lg~~~g~~~~  261 (296)
                      +|++|+ ..+...++++ +.+|++..
T Consensus       235 ld~~g~~~~~~~~~~~l-~~~g~~v~  259 (340)
T TIGR00692       235 LEMSGAPKALEQGLQAV-TPGGRVSL  259 (340)
T ss_pred             EECCCCHHHHHHHHHhh-cCCCEEEE
Confidence            999987 6788899999 77776633

E. coli His-90 modulates substrate specificity and is believed part of the active site.

>cd08241 QOR1 Quinone oxidoreductase (QOR)

Probab=99.95  E-value=5.4e-26  Score=204.77  Aligned_cols=207  Identities=37%  Similarity=0.594  Sum_probs=184.0

Q ss_pred             cEEEEeeeeecChhhHHHHcCCCCCCCCCCCcCCCceeEEEEEEccCCCCCCCCCCCCCCCCCCCEEEEecCCCCCcccc
Q psy1959          39 TIIEKKMMTRINSSDLLLYNGSGDAKPTLPLVPGFEFSGTVIEVADTKSSSTEEDDEEDVLQVGDKVLALNKELLHGFSD  118 (296)
Q Consensus        39 evlvkv~~~~i~~~D~~~~~g~~~~~~~~p~~~G~e~~G~V~~v~~~~~~~~~~g~~v~~~~~Gd~V~~~~~~~~g~~~~  118 (296)
                      +++||+.++++|+.|+....|.+......|.++|+|++|+|+.+          |+++..+++||+|+++..  .|+|++
T Consensus        29 ~v~i~v~~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~v~~~----------g~~~~~~~~G~~V~~~~~--~~~~~~   96 (323)
T cd08241          29 EVRIRVEAAGVNFPDLLMIQGKYQVKPPLPFVPGSEVAGVVEAV----------GEGVTGFKVGDRVVALTG--QGGFAE   96 (323)
T ss_pred             eEEEEEEEEecCHHHHHHHcCCCCCCCCCCCcccceeEEEEEEe----------CCCCCCCCCCCEEEEecC--CceeEE
Confidence            99999999999999999988876544455778999999999999          998888999999999872  389999


Q ss_pred             eEeeeCCceEECCCCCCHHHHhhhccHHHHHHHHHHHHcCCCCCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcc
Q psy1959         119 QCVVHTNDVFKIPEKMTFEHAASLADSYSTAQIVFSRHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSED  198 (296)
Q Consensus       119 ~~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~  198 (296)
                      |+.++.+.++++|++++..+++.+..++.+||.++.....++++++++|+|++|++|++++++| +..|++|++++++++
T Consensus        97 ~~~~~~~~~~~ip~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~vli~g~~~~~g~~~~~~a-~~~g~~v~~~~~~~~  175 (323)
T cd08241          97 EVVVPAAAVFPLPDGLSFEEAAALPVTYGTAYHALVRRARLQPGETVLVLGAAGGVGLAAVQLA-KALGARVIAAASSEE  175 (323)
T ss_pred             EEEcCHHHceeCCCCCCHHHHhhhhhHHHHHHHHHHHhcCCCCCCEEEEEcCCchHHHHHHHHH-HHhCCEEEEEeCCHH
Confidence            9999999999999999999998899999999999877889999999999999999999999999 668999999999999


Q ss_pred             hHHHHHhcCCcEEEEcCCchhHHHHHHHHhCCCcccEEEECCCCccHHHHHHHhhccCceEE
Q psy1959         199 KTDLIRQKGAWAALTFTNEKSLVNKVLEVSGGKYANVVFEAVGGEDKTDLIRQKGAWAALTF  260 (296)
Q Consensus       199 ~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~g~d~vld~~g~~~~~~~~~~lg~~~g~~~  260 (296)
                      +.+.++++|++..++... .++.+.+...+.++++|++++++|+.....+++++ +.+|.+.
T Consensus       176 ~~~~~~~~g~~~~~~~~~-~~~~~~i~~~~~~~~~d~v~~~~g~~~~~~~~~~~-~~~g~~v  235 (323)
T cd08241         176 KLALARALGADHVIDYRD-PDLRERVKALTGGRGVDVVYDPVGGDVFEASLRSL-AWGGRLL  235 (323)
T ss_pred             HHHHHHHcCCceeeecCC-ccHHHHHHHHcCCCCcEEEEECccHHHHHHHHHhh-ccCCEEE
Confidence            999999899877777665 56777788887777899999999998888999999 7777663

QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic

>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase

Probab=99.95  E-value=7.1e-27  Score=208.82  Aligned_cols=191  Identities=22%  Similarity=0.276  Sum_probs=159.7

Q ss_pred             cCCCceeEEEEEEccCCCCCCCCCCCCC------CCCCCCEEEEecC--------------------------------C
Q psy1959          70 VPGFEFSGTVIEVADTKSSSTEEDDEED------VLQVGDKVLALNK--------------------------------E  111 (296)
Q Consensus        70 ~~G~e~~G~V~~v~~~~~~~~~~g~~v~------~~~~Gd~V~~~~~--------------------------------~  111 (296)
                      ++|||++|+|+++          |++|+      ++++||||+....                                .
T Consensus         1 v~GHE~~G~V~~v----------G~~v~~~~~~~~~~~GdrV~~~~~~~cg~C~~C~~g~~~~C~~~~~~g~~~~~~~~~   70 (280)
T TIGR03366         1 VLGHEIVGEVVAL----------RGGFTPADDGVPLRLGQRVVWSVTVPCGRCFRCRRGLPQKCDSLRKYGHEALDSGWP   70 (280)
T ss_pred             CCCcccceEEEEe----------CCCccccccCCCCCCCCEEEEcCCCCCCCChhhhCcCcccCCChhhcCcccccCCcc
Confidence            5899999999999          99998      8999999975321                                0


Q ss_pred             CCCcccceEeeeCC-ceEECCCCCCHHHHhhhccHHHHHHHHHHHHcCCCCCcEEEEEcCCCcHHHHHHHHHHHhCCCE-
Q psy1959         112 LLHGFSDQCVVHTN-DVFKIPEKMTFEHAASLADSYSTAQIVFSRHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKAK-  189 (296)
Q Consensus       112 ~~g~~~~~~~v~~~-~~~~iP~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~~-  189 (296)
                      .+|+|+||+++|+. .++++|+++++++++.+...+.|||+++. .....+|++|+|+|+ |++|++++|+| +.+|++ 
T Consensus        71 ~~G~~aey~~v~~~~~~~~lP~~~~~~~aa~l~~~~~ta~~al~-~~~~~~g~~VlV~G~-G~vG~~~~~~a-k~~G~~~  147 (280)
T TIGR03366        71 LSGGYAEHCHLPAGTAIVPVPDDLPDAVAAPAGCATATVMAALE-AAGDLKGRRVLVVGA-GMLGLTAAAAA-AAAGAAR  147 (280)
T ss_pred             ccccceeeEEecCCCcEEECCCCCCHHHhhHhhhHHHHHHHHHH-hccCCCCCEEEEECC-CHHHHHHHHHH-HHcCCCE
Confidence            24999999999997 79999999999999999999999999984 456679999999997 99999999999 678996 


Q ss_pred             EEEEeCCcchHHHHHhcCCcEEEEcCCchhHHHHHHHHhCCCcccEEEECCCC-ccHHHHHHHhhccCceEE--------
Q psy1959         190 VIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNKVLEVSGGKYANVVFEAVGG-EDKTDLIRQKGAWAALTF--------  260 (296)
Q Consensus       190 Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~g~d~vld~~g~-~~~~~~~~~lg~~~g~~~--------  260 (296)
                      |++++++++|.+.++++|++.+++..+   ..+.+.+.+.+.++|++||++|. ..+..+++++ +++|++.        
T Consensus       148 Vi~~~~~~~r~~~a~~~Ga~~~i~~~~---~~~~~~~~~~~~g~d~vid~~G~~~~~~~~~~~l-~~~G~iv~~G~~~~~  223 (280)
T TIGR03366       148 VVAADPSPDRRELALSFGATALAEPEV---LAERQGGLQNGRGVDVALEFSGATAAVRACLESL-DVGGTAVLAGSVFPG  223 (280)
T ss_pred             EEEECCCHHHHHHHHHcCCcEecCchh---hHHHHHHHhCCCCCCEEEECCCChHHHHHHHHHh-cCCCEEEEeccCCCC
Confidence            888888999999999999988777643   24556667777789999999998 5789999999 7776663        


Q ss_pred             ----eecccceeeeeEEeccc
Q psy1959         261 ----TNEKSLVNKVLEVSGGK  277 (296)
Q Consensus       261 ----~~~~~~~~k~~~i~g~~  277 (296)
                          ++...++.|+++|.|+.
T Consensus       224 ~~~~i~~~~~~~~~~~i~g~~  244 (280)
T TIGR03366       224 GPVALDPEQVVRRWLTIRGVH  244 (280)
T ss_pred             CceeeCHHHHHhCCcEEEecC
Confidence                22235677888898876

This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.

>cd05289 MDR_like_2 alcohol dehydrogenase and quinone reductase-like medium chain degydrogenases/reductases

Probab=99.95  E-value=9.5e-26  Score=202.13  Aligned_cols=226  Identities=27%  Similarity=0.367  Sum_probs=186.6

Q ss_pred             cceEEecCCCCC-------CCCCCCCCCCCCCCcEEEEeeeeecChhhHHHHcCCCC--CCCCCCCcCCCceeEEEEEEc
Q psy1959          13 SDLLLYNGSGDA-------KPTLPLVPGFEFSGTIIEKKMMTRINSSDLLLYNGSGD--AKPTLPLVPGFEFSGTVIEVA   83 (296)
Q Consensus        13 ~~~~~~~~~~~~-------~~~p~~~~~~~~~~evlvkv~~~~i~~~D~~~~~g~~~--~~~~~p~~~G~e~~G~V~~v~   83 (296)
                      |++++++.++..       .+.|.+.++     +|+||+.++++|+.|+..+.|...  ....+|..+|||++|+|+.+ 
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~~~g~e~~G~v~~~-   74 (309)
T cd05289           1 MKAVRIHEYGGPEVLELADVPTPEPGPG-----EVLVKVHAAGVNPVDLKIREGLLKAAFPLTLPLIPGHDVAGVVVAV-   74 (309)
T ss_pred             CceEEEcccCCccceeecccCCCCCCCC-----eEEEEEEEeeCCHHHHHHhcCCccccCCCCCCCccccceeEEEEee-
Confidence            456666654432       344556777     999999999999999998877653  12345889999999999999 


Q ss_pred             cCCCCCCCCCCCCCCCCCCCEEEEecC-CCCCcccceEeeeCCceEECCCCCCHHHHhhhccHHHHHHHHHHHHcCCCCC
Q psy1959          84 DTKSSSTEEDDEEDVLQVGDKVLALNK-ELLHGFSDQCVVHTNDVFKIPEKMTFEHAASLADSYSTAQIVFSRHAKLKEK  162 (296)
Q Consensus        84 ~~~~~~~~~g~~v~~~~~Gd~V~~~~~-~~~g~~~~~~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g  162 (296)
                               |+++..+++||+|+++.. ...|+|++|+.++...++++|++++...++.++..+.++|.++.+...+.++
T Consensus        75 ---------G~~~~~~~~G~~V~~~~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~  145 (309)
T cd05289          75 ---------GPGVTGFKVGDEVFGMTPFTRGGAYAEYVVVPADELALKPANLSFEEAAALPLAGLTAWQALFELGGLKAG  145 (309)
T ss_pred             ---------CCCCCCCCCCCEEEEccCCCCCCcceeEEEecHHHhccCCCCCCHHHHHhhhHHHHHHHHHHHhhcCCCCC
Confidence                     999999999999999861 0128999999999999999999999999999999999999999887779999


Q ss_pred             cEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCcEEEEcCCchhHHHHHHHHhCCCcccEEEECCCC
Q psy1959         163 QTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNKVLEVSGGKYANVVFEAVGG  242 (296)
Q Consensus       163 ~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~g~d~vld~~g~  242 (296)
                      ++++|+|++|++|+++++++ +..|++|++++.++ +.+.++++|.+..++... .++.+    ...++++|++++++|+
T Consensus       146 ~~vlv~g~~g~~g~~~~~~a-~~~g~~v~~~~~~~-~~~~~~~~g~~~~~~~~~-~~~~~----~~~~~~~d~v~~~~~~  218 (309)
T cd05289         146 QTVLIHGAAGGVGSFAVQLA-KARGARVIATASAA-NADFLRSLGADEVIDYTK-GDFER----AAAPGGVDAVLDTVGG  218 (309)
T ss_pred             CEEEEecCCchHHHHHHHHH-HHcCCEEEEEecch-hHHHHHHcCCCEEEeCCC-Cchhh----ccCCCCceEEEECCch
Confidence            99999999899999999999 67899999998777 888888889877776654 33332    3445689999999999


Q ss_pred             ccHHHHHHHhhccCceEEe
Q psy1959         243 EDKTDLIRQKGAWAALTFT  261 (296)
Q Consensus       243 ~~~~~~~~~lg~~~g~~~~  261 (296)
                      .....+++++ +.+|.+..
T Consensus       219 ~~~~~~~~~l-~~~g~~v~  236 (309)
T cd05289         219 ETLARSLALV-KPGGRLVS  236 (309)
T ss_pred             HHHHHHHHHH-hcCcEEEE
Confidence            9899999999 77777643

Members identified as zinc-dependent alcohol dehydrogenases and quinone oxidoreductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts et

>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins

Probab=99.95  E-value=1.2e-25  Score=204.75  Aligned_cols=221  Identities=22%  Similarity=0.256  Sum_probs=182.0

Q ss_pred             ceEEecCCC-CC----CCCCCCCCCCCCCCcEEEEeeeeecChhhHHHHcCCCCCCCCCCCcCCCceeEEEEEEccCCCC
Q psy1959          14 DLLLYNGSG-DA----KPTLPLVPGFEFSGTIIEKKMMTRINSSDLLLYNGSGDAKPTLPLVPGFEFSGTVIEVADTKSS   88 (296)
Q Consensus        14 ~~~~~~~~~-~~----~~~p~~~~~~~~~~evlvkv~~~~i~~~D~~~~~g~~~~~~~~p~~~G~e~~G~V~~v~~~~~~   88 (296)
                      |++++.+++ +.    .|.|.+.++     +|+|++.++++|+.|...+.|.+.. ..+|.++|+|++|+|+++      
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~-----~v~v~v~~~~i~~~d~~~~~g~~~~-~~~p~~~g~e~~G~v~~~------   68 (330)
T cd08245           1 KAAVVHAAGGPLEPEEVPVPEPGPG-----EVLIKIEACGVCHTDLHAAEGDWGG-SKYPLVPGHEIVGEVVEV------   68 (330)
T ss_pred             CeEEEecCCCCceEEeccCCCCCCC-----eEEEEEEEEeccHHHHHHHcCCCCC-CCCCcccCccceEEEEEE------
Confidence            355555553 22    566667777     9999999999999999999887643 356889999999999999      


Q ss_pred             CCCCCCCCCCCCCCCEEEEec--------------------------CCCCCcccceEeeeCCceEECCCCCCHHHHhhh
Q psy1959          89 STEEDDEEDVLQVGDKVLALN--------------------------KELLHGFSDQCVVHTNDVFKIPEKMTFEHAASL  142 (296)
Q Consensus        89 ~~~~g~~v~~~~~Gd~V~~~~--------------------------~~~~g~~~~~~~v~~~~~~~iP~~~~~~~aa~l  142 (296)
                          |+++.++++||+|+...                          .+..|+|++|+.++.+.++++|+++++.+++.+
T Consensus        69 ----g~~~~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~~p~~~~~~~~~~l  144 (330)
T cd08245          69 ----GAGVEGRKVGDRVGVGWLVGSCGRCEYCRRGLENLCQKAVNTGYTTQGGYAEYMVADAEYTVLLPDGLPLAQAAPL  144 (330)
T ss_pred             ----CCCCcccccCCEEEEccccCCCCCChhhhCcCcccCcCccccCcccCCccccEEEEcHHHeEECCCCCCHHHhhhh
Confidence                99998999999998421                          012489999999999999999999999999999


Q ss_pred             ccHHHHHHHHHHHHcCCCCCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCcEEEEcCCchhHHH
Q psy1959         143 ADSYSTAQIVFSRHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVN  222 (296)
Q Consensus       143 ~~~~~ta~~~l~~~~~~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  222 (296)
                      ...+.+||.++.. .+++++++|+|+|+ |++|++++++| +..|.+|+++++++++.+.++++|++.+++... .....
T Consensus       145 ~~~~~ta~~~l~~-~~~~~~~~vlI~g~-g~iG~~~~~~a-~~~G~~v~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~  220 (330)
T cd08245         145 LCAGITVYSALRD-AGPRPGERVAVLGI-GGLGHLAVQYA-RAMGFETVAITRSPDKRELARKLGADEVVDSGA-ELDEQ  220 (330)
T ss_pred             hhhHHHHHHHHHh-hCCCCCCEEEEECC-CHHHHHHHHHH-HHCCCEEEEEeCCHHHHHHHHHhCCcEEeccCC-cchHH
Confidence            9999999999955 78999999999976 77999999999 668999999999999999999999887776654 22222


Q ss_pred             HHHHHhCCCcccEEEECCCC-ccHHHHHHHhhccCceEE
Q psy1959         223 KVLEVSGGKYANVVFEAVGG-EDKTDLIRQKGAWAALTF  260 (296)
Q Consensus       223 ~i~~~~~~~g~d~vld~~g~-~~~~~~~~~lg~~~g~~~  260 (296)
                      .    . .+++|+++|++++ .....+++++ +.+|++.
T Consensus       221 ~----~-~~~~d~vi~~~~~~~~~~~~~~~l-~~~G~~i  253 (330)
T cd08245         221 A----A-AGGADVILVTVVSGAAAEAALGGL-RRGGRIV  253 (330)
T ss_pred             h----c-cCCCCEEEECCCcHHHHHHHHHhc-ccCCEEE
Confidence            2    2 2479999999886 7888999999 7776664

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an

>cd05288 PGDH Prostaglandin dehydrogenases

Probab=99.95  E-value=1.7e-25  Score=203.57  Aligned_cols=210  Identities=21%  Similarity=0.243  Sum_probs=176.6

Q ss_pred             CCCCCCCCCCCCCCcEEEEeeeeecChhhHHHHcCCCCC--CCCCCCcCCCceeEEEEEEccCCCCCCCCCCCCCCCCCC
Q psy1959          25 KPTLPLVPGFEFSGTIIEKKMMTRINSSDLLLYNGSGDA--KPTLPLVPGFEFSGTVIEVADTKSSSTEEDDEEDVLQVG  102 (296)
Q Consensus        25 ~~~p~~~~~~~~~~evlvkv~~~~i~~~D~~~~~g~~~~--~~~~p~~~G~e~~G~V~~v~~~~~~~~~~g~~v~~~~~G  102 (296)
                      .|.|.+.++     +|+||+.++++|+.|.....+....  +...+.++|+|++|+|+++          |.+  .+++|
T Consensus        25 ~~~p~~~~~-----~v~Vkv~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~e~~G~V~~~----------G~~--~~~~G   87 (329)
T cd05288          25 VPLPELKDG-----EVLVRTLYLSVDPYMRGWMSDAKSYSPPVQLGEPMRGGGVGEVVES----------RSP--DFKVG   87 (329)
T ss_pred             ccCCCCCCC-----eEEEEEEEEecCHHHhhhhccCcccCCCccCCCcccCceEEEEEec----------CCC--CCCCC
Confidence            566777888     9999999999999887655553211  1123557899999999999          754  69999


Q ss_pred             CEEEEecCCCCCcccceEeeeC-CceEECCCCCC--HHHHhh-hccHHHHHHHHHHHHcCCCCCcEEEEEcCCCcHHHHH
Q psy1959         103 DKVLALNKELLHGFSDQCVVHT-NDVFKIPEKMT--FEHAAS-LADSYSTAQIVFSRHAKLKEKQTVLVTAAGGGLGLAA  178 (296)
Q Consensus       103 d~V~~~~~~~~g~~~~~~~v~~-~~~~~iP~~~~--~~~aa~-l~~~~~ta~~~l~~~~~~~~g~~vlI~Ga~g~vG~aa  178 (296)
                      |+|+++     ++|++|+.++. +.++++|++++  ...+++ +++++.+||+++.+...+.++++|+|+|++|++|+++
T Consensus        88 d~V~~~-----~~~~~~~~v~~~~~~~~lP~~~~~~~~~~~~~l~~~~~ta~~~l~~~~~~~~~~~vlI~g~~g~ig~~~  162 (329)
T cd05288          88 DLVSGF-----LGWQEYAVVDGASGLRKLDPSLGLPLSAYLGVLGMTGLTAYFGLTEIGKPKPGETVVVSAAAGAVGSVV  162 (329)
T ss_pred             CEEecc-----cceEEEEEecchhhcEECCcccCCCHHHHHHhcccHHHHHHHHHHhccCCCCCCEEEEecCcchHHHHH
Confidence            999886     47999999999 99999999995  545545 8999999999998888899999999999889999999


Q ss_pred             HHHHHHhCCCEEEEEeCCcchHHHHHh-cCCcEEEEcCCchhHHHHHHHHhCCCcccEEEECCCCccHHHHHHHhhccCc
Q psy1959         179 VDMATKIYKAKVIGVCNSEDKTDLIRQ-KGAWAALTFTNEKSLVNKVLEVSGGKYANVVFEAVGGEDKTDLIRQKGAWAA  257 (296)
Q Consensus       179 ~~la~~~~g~~Vi~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~~~g~d~vld~~g~~~~~~~~~~lg~~~g  257 (296)
                      +++| +..|++|+++++++++.+.+++ +|++.++++++ .++.+.+.+.++ +++|+++||+|+..+..+++++ +.+|
T Consensus       163 ~~~a-~~~G~~vi~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~v~~~~~-~~~d~vi~~~g~~~~~~~~~~l-~~~G  238 (329)
T cd05288         163 GQIA-KLLGARVVGIAGSDEKCRWLVEELGFDAAINYKT-PDLAEALKEAAP-DGIDVYFDNVGGEILDAALTLL-NKGG  238 (329)
T ss_pred             HHHH-HHcCCEEEEEeCCHHHHHHHHhhcCCceEEecCC-hhHHHHHHHhcc-CCceEEEEcchHHHHHHHHHhc-CCCc
Confidence            9999 5689999999999999999988 89988888876 567777777764 6899999999998999999999 7777


Q ss_pred             eEE
Q psy1959         258 LTF  260 (296)
Q Consensus       258 ~~~  260 (296)
                      ++.
T Consensus       239 ~~v  241 (329)
T cd05288         239 RIA  241 (329)
T ss_pred             eEE
Confidence            663

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino

>cd08232 idonate-5-DH L-idonate 5-dehydrogenase

Probab=99.95  E-value=1.1e-25  Score=206.03  Aligned_cols=211  Identities=24%  Similarity=0.312  Sum_probs=172.3

Q ss_pred             CCCCCCCCCCCCCCcEEEEeeeeecChhhHHHHc-CCCC-CCCCCCCcCCCceeEEEEEEccCCCCCCCCCCCCCCCCCC
Q psy1959          25 KPTLPLVPGFEFSGTIIEKKMMTRINSSDLLLYN-GSGD-AKPTLPLVPGFEFSGTVIEVADTKSSSTEEDDEEDVLQVG  102 (296)
Q Consensus        25 ~~~p~~~~~~~~~~evlvkv~~~~i~~~D~~~~~-g~~~-~~~~~p~~~G~e~~G~V~~v~~~~~~~~~~g~~v~~~~~G  102 (296)
                      .|.|.+.++     ||+||+.++++|++|..... |.+. ....+|.++|+|++|+|+++          |+++..|++|
T Consensus        14 ~~~p~l~~~-----~v~I~v~~~~i~~~d~~~~~~~~~~~~~~~~p~~~g~e~~G~v~~v----------G~~v~~~~~G   78 (339)
T cd08232          14 RPAPEPGPG-----EVRVRVAAGGICGSDLHYYQHGGFGTVRLREPMVLGHEVSGVVEAV----------GPGVTGLAPG   78 (339)
T ss_pred             cCCCCCCCC-----EEEEEEEEEEECcccHHHHcCCCCCcccccCCeecCccceEEEEee----------CCCCCcCCCC
Confidence            567778888     99999999999999988774 3321 11245779999999999999          9999999999


Q ss_pred             CEEEEec------------------------------CCCCCcccceEeeeCCceEECCCCCCHHHHhhhccHHHHHHHH
Q psy1959         103 DKVLALN------------------------------KELLHGFSDQCVVHTNDVFKIPEKMTFEHAASLADSYSTAQIV  152 (296)
Q Consensus       103 d~V~~~~------------------------------~~~~g~~~~~~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~  152 (296)
                      |+|++..                              .+..|+|++|++++.+.++++|+++++++++. ..++.+||++
T Consensus        79 d~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~~~~~v~v~~~~~~~iP~~~~~~~aa~-~~~~~~a~~~  157 (339)
T cd08232          79 QRVAVNPSRPCGTCDYCRAGRPNLCLNMRFLGSAMRFPHVQGGFREYLVVDASQCVPLPDGLSLRRAAL-AEPLAVALHA  157 (339)
T ss_pred             CEEEEccCCcCCCChHHhCcCcccCccccceeeccccCCCCCceeeEEEechHHeEECcCCCCHHHhhh-cchHHHHHHH
Confidence            9998721                              01248999999999999999999999999874 6788999999


Q ss_pred             HHHHcCCCCCcEEEEEcCCCcHHHHHHHHHHHhCCC-EEEEEeCCcchHHHHHhcCCcEEEEcCCchhHHHHHHHHh-CC
Q psy1959         153 FSRHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKA-KVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNKVLEVS-GG  230 (296)
Q Consensus       153 l~~~~~~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~-~Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~-~~  230 (296)
                      +.....+ ++++|+|.|+ |++|++++|+| +.+|+ +++++++++++.+.++++|++.++++++ .+    +.+.. ..
T Consensus       158 l~~~~~~-~~~~VLI~g~-g~vG~~~~~la-k~~G~~~v~~~~~s~~~~~~~~~~g~~~vi~~~~-~~----~~~~~~~~  229 (339)
T cd08232         158 VNRAGDL-AGKRVLVTGA-GPIGALVVAAA-RRAGAAEIVATDLADAPLAVARAMGADETVNLAR-DP----LAAYAADK  229 (339)
T ss_pred             HHhcCCC-CCCEEEEECC-CHHHHHHHHHH-HHcCCcEEEEECCCHHHHHHHHHcCCCEEEcCCc-hh----hhhhhccC
Confidence            8666666 9999999875 99999999999 56899 8999998888888889999888887755 33    22222 23


Q ss_pred             CcccEEEECCCC-ccHHHHHHHhhccCceEE
Q psy1959         231 KYANVVFEAVGG-EDKTDLIRQKGAWAALTF  260 (296)
Q Consensus       231 ~g~d~vld~~g~-~~~~~~~~~lg~~~g~~~  260 (296)
                      .++|+++|+.|+ ..++..++++ +.+|++.
T Consensus       230 ~~vd~vld~~g~~~~~~~~~~~L-~~~G~~v  259 (339)
T cd08232         230 GDFDVVFEASGAPAALASALRVV-RPGGTVV  259 (339)
T ss_pred             CCccEEEECCCCHHHHHHHHHHH-hcCCEEE
Confidence            469999999997 6788999999 7777764

L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai

>smart00829 PKS_ER Enoylreductase

Probab=99.94  E-value=1.8e-25  Score=198.02  Aligned_cols=199  Identities=28%  Similarity=0.367  Sum_probs=178.1

Q ss_pred             EEeeeeecChhhHHHHcCCCCCCCCCCCcCCCceeEEEEEEccCCCCCCCCCCCCCCCCCCCEEEEecCCCCCcccceEe
Q psy1959          42 EKKMMTRINSSDLLLYNGSGDAKPTLPLVPGFEFSGTVIEVADTKSSSTEEDDEEDVLQVGDKVLALNKELLHGFSDQCV  121 (296)
Q Consensus        42 vkv~~~~i~~~D~~~~~g~~~~~~~~p~~~G~e~~G~V~~v~~~~~~~~~~g~~v~~~~~Gd~V~~~~~~~~g~~~~~~~  121 (296)
                      ||+.++++|+.|.....|.+.    .|.++|+|++|+|+++          |+++..+++||+|+++..   |+|++|+.
T Consensus         2 i~v~~~~i~~~d~~~~~g~~~----~~~~~g~e~~G~v~~~----------G~~~~~~~~Gd~V~~~~~---g~~~~~~~   64 (288)
T smart00829        2 VEVRAAGLNFRDVLIALGLLP----GEAVLGGECAGVVTRV----------GPGVTGLAVGDRVMGLAP---GSFATYVR   64 (288)
T ss_pred             eeEEEEecCHHHHHHhcCCCC----CCCCCCceeEEEEEee----------CCCCcCCCCCCEEEEEcC---CceeeEEE
Confidence            789999999999999988653    2678999999999999          999989999999999865   89999999


Q ss_pred             eeCCceEECCCCCCHHHHhhhccHHHHHHHHHHHHcCCCCCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHH
Q psy1959         122 VHTNDVFKIPEKMTFEHAASLADSYSTAQIVFSRHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTD  201 (296)
Q Consensus       122 v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~  201 (296)
                      ++.+.++++|+++++.+++.+..++.++|.++.+...+++|++|+|+|+.|++|+++++++ +.+|++|+++++++++.+
T Consensus        65 ~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~g~~vlv~g~~~~~g~~~~~~a-~~~g~~v~~~~~~~~~~~  143 (288)
T smart00829       65 TDARLVVPIPDGLSFEEAATVPVVFLTAYYALVDLARLRPGESVLIHAAAGGVGQAAIQLA-QHLGAEVFATAGSPEKRD  143 (288)
T ss_pred             ccHHHeEECCCCCCHHHHHhchHHHHHHHHHHHHHhCCCCCCEEEEecCCcHHHHHHHHHH-HHcCCEEEEEeCCHHHHH
Confidence            9999999999999999999999999999999878889999999999998899999999999 678999999999999999


Q ss_pred             HHHhcCC--cEEEEcCCchhHHHHHHHHhCCCcccEEEECCCCccHHHHHHHhhccCceEE
Q psy1959         202 LIRQKGA--WAALTFTNEKSLVNKVLEVSGGKYANVVFEAVGGEDKTDLIRQKGAWAALTF  260 (296)
Q Consensus       202 ~~~~~g~--~~~~~~~~~~~~~~~i~~~~~~~g~d~vld~~g~~~~~~~~~~lg~~~g~~~  260 (296)
                      .++++|+  +..+++.+ .++.+.+.+...++++|+++|++|+..+..+++++ +.+|.+.
T Consensus       144 ~~~~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~vi~~~~~~~~~~~~~~l-~~~g~~v  202 (288)
T smart00829      144 FLRELGIPDDHIFSSRD-LSFADEILRATGGRGVDVVLNSLAGEFLDASLRCL-APGGRFV  202 (288)
T ss_pred             HHHHcCCChhheeeCCC-ccHHHHHHHHhCCCCcEEEEeCCCHHHHHHHHHhc-cCCcEEE
Confidence            9999998  66677665 56777788777777899999999988888899999 6666664

Enoylreductase in Polyketide synthases.

>cd08267 MDR1 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.94  E-value=3.3e-25  Score=200.02  Aligned_cols=231  Identities=28%  Similarity=0.397  Sum_probs=184.3

Q ss_pred             eecccCCcceEEecCCCCCCCCCCCCCCCCCCCcEEEEeeeeecChhhHHHHcCCCCC--CCCCCCcCCCceeEEEEEEc
Q psy1959           6 QCCALNSSDLLLYNGSGDAKPTLPLVPGFEFSGTIIEKKMMTRINSSDLLLYNGSGDA--KPTLPLVPGFEFSGTVIEVA   83 (296)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~evlvkv~~~~i~~~D~~~~~g~~~~--~~~~p~~~G~e~~G~V~~v~   83 (296)
                      +++.+++.+.+.+.-.  ..|.|.|.++     ||+|++.++++|+.|.....|.+..  ...+|..+|||++|+|+++ 
T Consensus         2 ~~~~~~~~~~~~~~~~--~~~~~~~~~~-----~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~~~g~e~~G~v~~~-   73 (319)
T cd08267           2 VYTRYGSPEVLLLLEV--EVPIPTPKPG-----EVLVKVHAASVNPVDWKLRRGPPKLLLGRPFPPIPGMDFAGEVVAV-   73 (319)
T ss_pred             eeCCCCChhhhhhccc--cCCCCCCCCC-----EEEEEEEEeeCCHHHHHHHcCCCcccccCCCCCcccceeeEEEEEe-
Confidence            4455666665432311  2466677888     9999999999999999998776532  1234678999999999999 


Q ss_pred             cCCCCCCCCCCCCCCCCCCCEEEEecC-CCCCcccceEeeeCCceEECCCCCCHHHHhhhccHHHHHHHHHHHHcCCCCC
Q psy1959          84 DTKSSSTEEDDEEDVLQVGDKVLALNK-ELLHGFSDQCVVHTNDVFKIPEKMTFEHAASLADSYSTAQIVFSRHAKLKEK  162 (296)
Q Consensus        84 ~~~~~~~~~g~~v~~~~~Gd~V~~~~~-~~~g~~~~~~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g  162 (296)
                               |+++.++++||+|++... ...|+|++|+.++.+.++++|++++.++++.++.++.+||+++.+...+++|
T Consensus        74 ---------G~~v~~~~~Gd~V~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~g  144 (319)
T cd08267          74 ---------GSGVTRFKVGDEVFGRLPPKGGGALAEYVVAPESGLAKKPEGVSFEEAAALPVAGLTALQALRDAGKVKPG  144 (319)
T ss_pred             ---------CCCCCCCCCCCEEEEeccCCCCceeeEEEEechhheEECCCCCCHHHHHhhhhHHHHHHHHHHHhcCCCCC
Confidence                     999999999999998752 1248899999999999999999999999999999999999999888889999


Q ss_pred             cEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCcEEEEcCCchhHHHHHHHHhCCCcccEEEECCCC
Q psy1959         163 QTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNKVLEVSGGKYANVVFEAVGG  242 (296)
Q Consensus       163 ~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~g~d~vld~~g~  242 (296)
                      ++++|+|++|++|++++++| +..|++|++++.+ ++.+.++++|.+.+++... .++.   ...+.++++|++++|+|+
T Consensus       145 ~~vli~g~~g~~g~~~~~la-~~~g~~v~~~~~~-~~~~~~~~~g~~~~~~~~~-~~~~---~~~~~~~~~d~vi~~~~~  218 (319)
T cd08267         145 QRVLINGASGGVGTFAVQIA-KALGAHVTGVCST-RNAELVRSLGADEVIDYTT-EDFV---ALTAGGEKYDVIFDAVGN  218 (319)
T ss_pred             CEEEEEcCCcHHHHHHHHHH-HHcCCEEEEEeCH-HHHHHHHHcCCCEeecCCC-CCcc---hhccCCCCCcEEEECCCc
Confidence            99999999999999999999 6789999998865 8888899999877776654 3332   344556789999999995


Q ss_pred             c--cHHHHHHHhhccCceEE
Q psy1959         243 E--DKTDLIRQKGAWAALTF  260 (296)
Q Consensus       243 ~--~~~~~~~~lg~~~g~~~  260 (296)
                      .  .....+..+ +.+|++.
T Consensus       219 ~~~~~~~~~~~l-~~~g~~i  237 (319)
T cd08267         219 SPFSLYRASLAL-KPGGRYV  237 (319)
T ss_pred             hHHHHHHhhhcc-CCCCEEE
Confidence            3  334444447 6666664

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>cd08275 MDR3 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.94  E-value=1.3e-24  Score=197.71  Aligned_cols=213  Identities=29%  Similarity=0.480  Sum_probs=179.5

Q ss_pred             CCCCCCCCCCCCCcEEEEeeeeecChhhHHHHcCCCCCCCCCCCcCCCceeEEEEEEccCCCCCCCCCCCCCCCCCCCEE
Q psy1959          26 PTLPLVPGFEFSGTIIEKKMMTRINSSDLLLYNGSGDAKPTLPLVPGFEFSGTVIEVADTKSSSTEEDDEEDVLQVGDKV  105 (296)
Q Consensus        26 ~~p~~~~~~~~~~evlvkv~~~~i~~~D~~~~~g~~~~~~~~p~~~G~e~~G~V~~v~~~~~~~~~~g~~v~~~~~Gd~V  105 (296)
                      +.|.|.++     +|+||+.++++|+.|.....|.+...+..|.++|||++|+|+.+          |+++.++++||+|
T Consensus        20 ~~~~~~~~-----~v~i~v~~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~v~~~----------g~~~~~~~~G~~V   84 (337)
T cd08275          20 ALPEPSSG-----EVRVRVEACGLNFADLMARQGLYDSAPKPPFVPGFECAGTVEAV----------GEGVKDFKVGDRV   84 (337)
T ss_pred             CCCCCCCC-----EEEEEEEEEecCHHHHHHHCCCCCCCCCCCCCCcceeEEEEEEE----------CCCCcCCCCCCEE
Confidence            44556778     99999999999999999988866544456788999999999999          9999999999999


Q ss_pred             EEecCCCCCcccceEeeeCCceEECCCCCCHHHHhhhccHHHHHHHHHHHHcCCCCCcEEEEEcCCCcHHHHHHHHHHHh
Q psy1959         106 LALNKELLHGFSDQCVVHTNDVFKIPEKMTFEHAASLADSYSTAQIVFSRHAKLKEKQTVLVTAAGGGLGLAAVDMATKI  185 (296)
Q Consensus       106 ~~~~~~~~g~~~~~~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vlI~Ga~g~vG~aa~~la~~~  185 (296)
                      +++..  .|+|++|+.++.+.++++|+++++.+++.++.++.+||+++.+...+++|++|+|+|++|++|++++++| +.
T Consensus        85 ~~~~~--~~~~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~vli~g~~g~~g~~~~~~a-~~  161 (337)
T cd08275          85 MGLTR--FGGYAEVVNVPADQVFPLPDGMSFEEAAAFPVNYLTAYYALFELGNLRPGQSVLVHSAAGGVGLAAGQLC-KT  161 (337)
T ss_pred             EEecC--CCeeeeEEEecHHHeEECCCCCCHHHHhhhhHHHHHHHHHHHHhhCCCCCCEEEEEcCcchHHHHHHHHH-HH
Confidence            99854  4899999999999999999999999999999999999999988899999999999999999999999999 44


Q ss_pred             C-CCEEEEEeCCcchHHHHHhcCCcEEEEcCCchhHHHHHHHHhCCCcccEEEECCCCccHHHHHHHhhccCceEE
Q psy1959         186 Y-KAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNKVLEVSGGKYANVVFEAVGGEDKTDLIRQKGAWAALTF  260 (296)
Q Consensus       186 ~-g~~Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~g~d~vld~~g~~~~~~~~~~lg~~~g~~~  260 (296)
                      . ...++.. ..+++.++++++|++..++... .++.+.+++.++ +++|+++|++|+.....+++++ +.+|.+.
T Consensus       162 ~~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~~~~~~-~~~d~v~~~~g~~~~~~~~~~l-~~~g~~v  233 (337)
T cd08275         162 VPNVTVVGT-ASASKHEALKENGVTHVIDYRT-QDYVEEVKKISP-EGVDIVLDALGGEDTRKSYDLL-KPMGRLV  233 (337)
T ss_pred             ccCcEEEEe-CCHHHHHHHHHcCCcEEeeCCC-CcHHHHHHHHhC-CCceEEEECCcHHHHHHHHHhh-ccCcEEE
Confidence            5 3232222 2345788888889887777765 567777777764 6899999999998888999999 7777664

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>KOG1196|consensus

Probab=99.90  E-value=5.6e-22  Score=171.70  Aligned_cols=249  Identities=20%  Similarity=0.245  Sum_probs=185.6

Q ss_pred             eeEeecccCCcceEEecCCCCCCCCCCCCCCCCCCCcEEEEeeeeecChhhHHHHcCCCCCCCCCCCcCCC----ceeEE
Q psy1959           3 IDIQCCALNSSDLLLYNGSGDAKPTLPLVPGFEFSGTIIEKKMMTRINSSDLLLYNGSGDAKPTLPLVPGF----EFSGT   78 (296)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~evlvkv~~~~i~~~D~~~~~g~~~~~~~~p~~~G~----e~~G~   78 (296)
                      ++.+...+++...+.+.....+. ..+++.+     +||||..|.+..|......+.-.+..-..|+.+|-    ..+|+
T Consensus         9 Lk~y~~g~P~~~d~~~~~~~~el-~~~~~s~-----~vlvknlYLS~DPymR~rM~~~~~~~y~~~~~~G~pi~g~GV~k   82 (343)
T KOG1196|consen    9 LKNYVTGFPTESDFEFTTTTVEL-RVPLGSG-----EVLVKNLYLSCDPYMRIRMGKPDPSDYAPPYEPGKPIDGFGVAK   82 (343)
T ss_pred             EeccCCCCCccccceeeeeeecc-cCCCCCc-----cEEeEeeeecCCHHHHhhccCCCcccccCcccCCcEecCCceEE
Confidence            44445566666666555433222 2335667     99999999999887543332111110112444442    45678


Q ss_pred             EEEEccCCCCCCCCCCCCCCCCCCCEEEEecCCCCCcccceEeeeCCc--eEECCC--CCCHHHH-hhhccHHHHHHHHH
Q psy1959          79 VIEVADTKSSSTEEDDEEDVLQVGDKVLALNKELLHGFSDQCVVHTND--VFKIPE--KMTFEHA-ASLADSYSTAQIVF  153 (296)
Q Consensus        79 V~~v~~~~~~~~~~g~~v~~~~~Gd~V~~~~~~~~g~~~~~~~v~~~~--~~~iP~--~~~~~~a-a~l~~~~~ta~~~l  153 (296)
                      |++.            +-+++++||.|+++..     |.||.+++.+.  .+++|.  +.++.-. ..|.++.+|||-.+
T Consensus        83 Vi~S------------~~~~~~~GD~v~g~~g-----Weeysii~~~~~~~~ki~~~~~~pLs~ylg~lGm~glTAy~Gf  145 (343)
T KOG1196|consen   83 VIDS------------GHPNYKKGDLVWGIVG-----WEEYSVITPNDLEHFKIQHPTDVPLSYYLGLLGMPGLTAYAGF  145 (343)
T ss_pred             EEec------------CCCCCCcCceEEEecc-----ceEEEEecCcchhcccCCCCCccCHhhhhhccCCchhHHHHHH
Confidence            8766            4566999999999864     99999997753  355544  4444333 35789999999999


Q ss_pred             HHHcCCCCCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHh-cCCcEEEEcCCchhHHHHHHHHhCCCc
Q psy1959         154 SRHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQ-KGAWAALTFTNEKSLVNKVLEVSGGKY  232 (296)
Q Consensus       154 ~~~~~~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~~~g  232 (296)
                      .++...++|++++|.||+|++|+.+-|+| +.+|++|+.++.+++|.+.++. +|.+..++|++..+..+++.+. .+.|
T Consensus       146 ~ei~~pk~geTv~VSaAsGAvGql~GQ~A-k~~Gc~VVGsaGS~EKv~ll~~~~G~d~afNYK~e~~~~~aL~r~-~P~G  223 (343)
T KOG1196|consen  146 YEICSPKKGETVFVSAASGAVGQLVGQFA-KLMGCYVVGSAGSKEKVDLLKTKFGFDDAFNYKEESDLSAALKRC-FPEG  223 (343)
T ss_pred             HHhcCCCCCCEEEEeeccchhHHHHHHHH-HhcCCEEEEecCChhhhhhhHhccCCccceeccCccCHHHHHHHh-CCCc
Confidence            99999999999999999999999999999 7899999999999999999985 6999999999844777777775 4679


Q ss_pred             ccEEEECCCCccHHHHHHHhhccCceEEe----------------ecccceeeeeEEeccc
Q psy1959         233 ANVVFEAVGGEDKTDLIRQKGAWAALTFT----------------NEKSLVNKVLEVSGGK  277 (296)
Q Consensus       233 ~d~vld~~g~~~~~~~~~~lg~~~g~~~~----------------~~~~~~~k~~~i~g~~  277 (296)
                      +|+.||++|+..++..+..| ...|++.+                +...++.|++.|.|.-
T Consensus       224 IDiYfeNVGG~~lDavl~nM-~~~gri~~CG~ISqYN~~~~~~~~~l~~ii~Kr~~iqgfl  283 (343)
T KOG1196|consen  224 IDIYFENVGGKMLDAVLLNM-NLHGRIAVCGMISQYNLENPEGLHNLSTIIYKRIRIQGFL  283 (343)
T ss_pred             ceEEEeccCcHHHHHHHHhh-hhccceEeeeeehhccccCCccccchhhheeeeEEeeeEE
Confidence            99999999999999999999 55444422                2347888999998844

>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members

Probab=99.87  E-value=1.1e-20  Score=168.08  Aligned_cols=167  Identities=29%  Similarity=0.343  Sum_probs=143.2

Q ss_pred             CCCCCcCCCceeEEEEEEccCCCCCCCCCCCCCCCCCCCEEEEecCCCCCcccceEeeeCCceEECCCCCCHHHHhhhcc
Q psy1959          65 PTLPLVPGFEFSGTVIEVADTKSSSTEEDDEEDVLQVGDKVLALNKELLHGFSDQCVVHTNDVFKIPEKMTFEHAASLAD  144 (296)
Q Consensus        65 ~~~p~~~G~e~~G~V~~v~~~~~~~~~~g~~v~~~~~Gd~V~~~~~~~~g~~~~~~~v~~~~~~~iP~~~~~~~aa~l~~  144 (296)
                      .++|.++|+|++|+|+++          |+++..+++||+|+++     +.|++|+.++.+.++++|++++..+++.+ .
T Consensus        18 ~~~p~v~g~e~~G~V~~v----------G~~v~~~~~Gd~V~~~-----~~~~~~~~v~~~~~~~ip~~l~~~~aa~~-~   81 (277)
T cd08255          18 LPLPLPPGYSSVGRVVEV----------GSGVTGFKPGDRVFCF-----GPHAERVVVPANLLVPLPDGLPPERAALT-A   81 (277)
T ss_pred             CcCCcccCcceeEEEEEe----------CCCCCCCCCCCEEEec-----CCcceEEEcCHHHeeECcCCCCHHHhHHH-H
Confidence            457899999999999999          9999999999999986     35999999999999999999999999888 8


Q ss_pred             HHHHHHHHHHHHcCCCCCcEEEEEcCCCcHHHHHHHHHHHhCCCE-EEEEeCCcchHHHHHhcC-CcEEEEcCCchhHHH
Q psy1959         145 SYSTAQIVFSRHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKAK-VIGVCNSEDKTDLIRQKG-AWAALTFTNEKSLVN  222 (296)
Q Consensus       145 ~~~ta~~~l~~~~~~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~~-Vi~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~  222 (296)
                      ++.+||+++ ...+++++++++|+|+ |++|++++++| +.+|++ |+++++++++.+.++++| ++.++...+      
T Consensus        82 ~~~ta~~~~-~~~~~~~g~~vlI~g~-g~vg~~~i~~a-~~~g~~~vi~~~~~~~~~~~~~~~g~~~~~~~~~~------  152 (277)
T cd08255          82 LAATALNGV-RDAEPRLGERVAVVGL-GLVGLLAAQLA-KAAGAREVVGVDPDAARRELAEALGPADPVAADTA------  152 (277)
T ss_pred             HHHHHHHHH-HhcCCCCCCEEEEECC-CHHHHHHHHHH-HHcCCCcEEEECCCHHHHHHHHHcCCCccccccch------
Confidence            899999998 4789999999999985 99999999999 668998 999999999999989998 443333221      


Q ss_pred             HHHHHhCCCcccEEEECCCC-ccHHHHHHHhhccCceEE
Q psy1959         223 KVLEVSGGKYANVVFEAVGG-EDKTDLIRQKGAWAALTF  260 (296)
Q Consensus       223 ~i~~~~~~~g~d~vld~~g~-~~~~~~~~~lg~~~g~~~  260 (296)
                         ..+.++++|++||+++. .....+++++ +.+|++.
T Consensus       153 ---~~~~~~~~d~vl~~~~~~~~~~~~~~~l-~~~g~~~  187 (277)
T cd08255         153 ---DEIGGRGADVVIEASGSPSALETALRLL-RDRGRVV  187 (277)
T ss_pred             ---hhhcCCCCCEEEEccCChHHHHHHHHHh-cCCcEEE
Confidence               11245689999999886 6888999999 7777774

This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD

>KOG1202|consensus

Probab=99.85  E-value=4.3e-21  Score=188.44  Aligned_cols=213  Identities=21%  Similarity=0.292  Sum_probs=181.1

Q ss_pred             cEEEEeeeeecChhhHHHHcCCCCCCCCCC-------CcCCCceeEEEEEEccCCCCCCCCCCCCCCCCCCCEEEEecCC
Q psy1959          39 TIIEKKMMTRINSSDLLLYNGSGDAKPTLP-------LVPGFEFSGTVIEVADTKSSSTEEDDEEDVLQVGDKVLALNKE  111 (296)
Q Consensus        39 evlvkv~~~~i~~~D~~~~~g~~~~~~~~p-------~~~G~e~~G~V~~v~~~~~~~~~~g~~v~~~~~Gd~V~~~~~~  111 (296)
                      .=+..|-|..||..|+++..|+.+.. .+|       .++|-|++|+                    .+-|.||++..+ 
T Consensus      1446 ~e~CtVYYAplNFRDiMLasGkL~~D-AiPG~~a~qdclLGmEFsGR--------------------d~~GrRvM~mvp- 1503 (2376)
T KOG1202|consen 1446 LELCTVYYAPLNFRDIMLASGKLSPD-AIPGDLASQDCLLGMEFSGR--------------------DASGRRVMGMVP- 1503 (2376)
T ss_pred             CceeEEEeccccHHHHHHhcCCCCcc-cCCCccchhhheeceeeccc--------------------cCCCcEEEEeee-
Confidence            66888999999999999999987642 223       4688888887                    577999998876 


Q ss_pred             CCCcccceEeeeCCceEECCCCCCHHHHhhhccHHHHHHHHHHHHcCCCCCcEEEEEcCCCcHHHHHHHHHHHhCCCEEE
Q psy1959         112 LLHGFSDQCVVHTNDVFKIPEKMTFEHAASLADSYSTAQIVFSRHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKAKVI  191 (296)
Q Consensus       112 ~~g~~~~~~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi  191 (296)
                       --++++.+.++.++++.+|++..+++|++.|+-|+|||++|..++.+++|+++||++++|++|++++.+| .+.|++|+
T Consensus      1504 -AksLATt~l~~rd~lWevP~~WTleeAstVP~VYsTaYYALVvRG~mkkGekiLIHaGsGGVGQAAIaiA-La~G~~VF 1581 (2376)
T KOG1202|consen 1504 -AKSLATTVLASRDFLWEVPSKWTLEEASTVPVVYSTAYYALVVRGQMKKGEKILIHAGSGGVGQAAIAIA-LAHGCTVF 1581 (2376)
T ss_pred             -hhhhhhhhhcchhhhhhCCcccchhhcccCceEeeeehhhhhhhccccCCcEEEEecCCCchhHHHHHHH-HHcCCEEE
Confidence             4789999999999999999999999999999999999999999999999999999999999999999999 78999999


Q ss_pred             EEeCCcchHHHHHhcCC----cEEEEcCCchhHHHHHHHHhCCCcccEEEECCCCccHHHHHHHhhccCceE-Eee----
Q psy1959         192 GVCNSEDKTDLIRQKGA----WAALTFTNEKSLVNKVLEVSGGKYANVVFEAVGGEDKTDLIRQKGAWAALT-FTN----  262 (296)
Q Consensus       192 ~~~~~~~~~~~~~~~g~----~~~~~~~~~~~~~~~i~~~~~~~g~d~vld~~g~~~~~~~~~~lg~~~g~~-~~~----  262 (296)
                      .++.++||++++....+    ..+-+.++ .++.+.++..++++|+|+|++....+.++.+++|| +..|++ .+.    
T Consensus      1582 TTVGSaEKRefL~~rFPqLqe~~~~NSRd-tsFEq~vl~~T~GrGVdlVLNSLaeEkLQASiRCL-a~~GRFLEIGKfDL 1659 (2376)
T KOG1202|consen 1582 TTVGSAEKREFLLKRFPQLQETNFANSRD-TSFEQHVLWHTKGRGVDLVLNSLAEEKLQASIRCL-ALHGRFLEIGKFDL 1659 (2376)
T ss_pred             EecCcHHHHHHHHHhchhhhhhccccccc-ccHHHHHHHHhcCCCeeeehhhhhHHHHHHHHHHH-HhcCeeeeecceec
Confidence            99999999999976532    22344555 89999999999999999999999999999999999 666655 221    


Q ss_pred             ------cccceeeeeEEeccc
Q psy1959         263 ------EKSLVNKVLEVSGGK  277 (296)
Q Consensus       263 ------~~~~~~k~~~i~g~~  277 (296)
                            ....+.|+.++.|-.
T Consensus      1660 SqNspLGMavfLkNvsfHGiL 1680 (2376)
T KOG1202|consen 1660 SQNSPLGMAVFLKNVSFHGIL 1680 (2376)
T ss_pred             ccCCcchhhhhhcccceeeee
Confidence                  125566667766654

>PF08240 ADH_N: Alcohol dehydrogenase GroES-like domain; InterPro: IPR013154 This is the catalytic domain of alcohol dehydrogenases (1

Probab=99.72  E-value=3.7e-17  Score=125.53  Aligned_cols=83  Identities=29%  Similarity=0.459  Sum_probs=70.9

Q ss_pred             CcEEEEeeeeecChhhHHHHcCCCCCCCCCCCcCCCceeEEEEEEccCCCCCCCCCCCCCCCCCCCEEEEecC-------
Q psy1959          38 GTIIEKKMMTRINSSDLLLYNGSGDAKPTLPLVPGFEFSGTVIEVADTKSSSTEEDDEEDVLQVGDKVLALNK-------  110 (296)
Q Consensus        38 ~evlvkv~~~~i~~~D~~~~~g~~~~~~~~p~~~G~e~~G~V~~v~~~~~~~~~~g~~v~~~~~Gd~V~~~~~-------  110 (296)
                      +||||||.+++||++|++++.|.......+|.++|||++|+|+++          |+++++|++||+|+....       
T Consensus         2 ~eVlVkv~a~gic~~D~~~~~g~~~~~~~~p~i~GhE~~G~V~~v----------G~~v~~~~~Gd~V~~~~~~~~~~c~   71 (109)
T PF08240_consen    2 GEVLVKVRAAGICGSDLHIREGGPPPPPKFPLILGHEGVGVVVAV----------GPGVTDFKVGDRVVVSPNIGCGECE   71 (109)
T ss_dssp             TEEEEEEEEEEE-HHHHHHHTTSSSSTSSSSEES-SEEEEEEEEE----------STTTTSSGTT-EEEEESEEETSSSH
T ss_pred             CEEEEEEEEeeeCHHHHHHHhhccccCCCCCcccccceeeeeeee----------ccccccccccceeeeecccCccCch
Confidence            499999999999999999999965555788999999999999999          999999999999997331       


Q ss_pred             ------------------CCCCcccceEeeeCCceEEC
Q psy1959         111 ------------------ELLHGFSDQCVVHTNDVFKI  130 (296)
Q Consensus       111 ------------------~~~g~~~~~~~v~~~~~~~i  130 (296)
                                        ...|+|+||+.+|+++++|+
T Consensus        72 ~c~~~~~~~c~~~~~~g~~~~G~~aey~~v~~~~~~~v  109 (109)
T PF08240_consen   72 YCLSGRPNLCPNPEVLGLGLDGGFAEYVVVPARNLVPV  109 (109)
T ss_dssp             HHHTTTGGGTTTBEETTTSSTCSSBSEEEEEGGGEEEE
T ss_pred             hhcCCccccCCCCCEeEcCCCCcccCeEEEehHHEEEC
Confidence                              24699999999999999885

1.1.1 from EC). Many of them contain an inserted zinc binding domain. This domain has a GroES-like structure; a name derived from the superfamily of proteins with a GroES fold. Proteins with a GroES fold structure have a highly conserved hydrophobic core and a glycyl-aspartate dipeptide which is thought to maintain the fold [, ].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1YKF_D 2NVB_A 3FSR_D 1BXZ_B 3FTN_A 3MEQ_D 3UOG_B 3HZZ_B 4DVJ_A 1P0F_A ....

>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1

Probab=99.49  E-value=1.3e-13  Score=108.67  Aligned_cols=105  Identities=28%  Similarity=0.416  Sum_probs=92.8

Q ss_pred             cHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCcEEEEcCCchhHHHHHHHHhCCCcccEEEECCCC-ccHHHHHHH
Q psy1959         173 GLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNKVLEVSGGKYANVVFEAVGG-EDKTDLIRQ  251 (296)
Q Consensus       173 ~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~g~d~vld~~g~-~~~~~~~~~  251 (296)
                      ++|++++|+| +..|++|++++++++|++.++++|++.++++++ .++.+.+++.+++.++|++|||+|. +.++.++++
T Consensus         1 ~vG~~a~q~a-k~~G~~vi~~~~~~~k~~~~~~~Ga~~~~~~~~-~~~~~~i~~~~~~~~~d~vid~~g~~~~~~~~~~~   78 (130)
T PF00107_consen    1 GVGLMAIQLA-KAMGAKVIATDRSEEKLELAKELGADHVIDYSD-DDFVEQIRELTGGRGVDVVIDCVGSGDTLQEAIKL   78 (130)
T ss_dssp             HHHHHHHHHH-HHTTSEEEEEESSHHHHHHHHHTTESEEEETTT-SSHHHHHHHHTTTSSEEEEEESSSSHHHHHHHHHH
T ss_pred             ChHHHHHHHH-HHcCCEEEEEECCHHHHHHHHhhcccccccccc-cccccccccccccccceEEEEecCcHHHHHHHHHH
Confidence            5899999999 678999999999999999999999999999988 7799999999988899999999995 899999999


Q ss_pred             hhccCceE-----------EeecccceeeeeEEecccccc
Q psy1959         252 KGAWAALT-----------FTNEKSLVNKVLEVSGGKYAN  280 (296)
Q Consensus       252 lg~~~g~~-----------~~~~~~~~~k~~~i~g~~~~~  280 (296)
                      + +++|++           .++...++.|++++.|+...+
T Consensus        79 l-~~~G~~v~vg~~~~~~~~~~~~~~~~~~~~i~g~~~~~  117 (130)
T PF00107_consen   79 L-RPGGRIVVVGVYGGDPISFNLMNLMFKEITIRGSWGGS  117 (130)
T ss_dssp             E-EEEEEEEEESSTSTSEEEEEHHHHHHTTEEEEEESSGG
T ss_pred             h-ccCCEEEEEEccCCCCCCCCHHHHHhCCcEEEEEccCC
Confidence            9 666655           455668889999999988443

1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....

>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional

Probab=98.73  E-value=1.6e-07  Score=89.99  Aligned_cols=116  Identities=17%  Similarity=0.193  Sum_probs=84.6

Q ss_pred             CCCCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCcEE-EEcCCc------------hhHHHHHH
Q psy1959         159 LKEKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAA-LTFTNE------------KSLVNKVL  225 (296)
Q Consensus       159 ~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~~~-~~~~~~------------~~~~~~i~  225 (296)
                      ..++++|+|+|+ |.+|+++++.| +.+|++|+++|.++++++.++++|++.+ ++..+.            .++.+..+
T Consensus       162 ~~pg~kVlViGa-G~iGL~Ai~~A-k~lGA~V~a~D~~~~rle~aeslGA~~v~i~~~e~~~~~~gya~~~s~~~~~~~~  239 (509)
T PRK09424        162 KVPPAKVLVIGA-GVAGLAAIGAA-GSLGAIVRAFDTRPEVAEQVESMGAEFLELDFEEEGGSGDGYAKVMSEEFIKAEM  239 (509)
T ss_pred             CcCCCEEEEECC-cHHHHHHHHHH-HHCCCEEEEEeCCHHHHHHHHHcCCeEEEeccccccccccchhhhcchhHHHHHH
Confidence            468999999998 99999999999 6789999999999999999999999854 443220            12222223


Q ss_pred             HH-hC-CCcccEEEECCCCc------c-HHHHHHHhhccCceEEe-------------eccccee-eeeEEeccc
Q psy1959         226 EV-SG-GKYANVVFEAVGGE------D-KTDLIRQKGAWAALTFT-------------NEKSLVN-KVLEVSGGK  277 (296)
Q Consensus       226 ~~-~~-~~g~d~vld~~g~~------~-~~~~~~~lg~~~g~~~~-------------~~~~~~~-k~~~i~g~~  277 (296)
                      +. .+ .+++|++|+|+|.+      . .+.+++.+ +++|.+..             +...++. +++++.|.+
T Consensus       240 ~~~~~~~~gaDVVIetag~pg~~aP~lit~~~v~~m-kpGgvIVdvg~~~GG~~e~t~~~~~v~~~~gVti~Gv~  313 (509)
T PRK09424        240 ALFAEQAKEVDIIITTALIPGKPAPKLITAEMVASM-KPGSVIVDLAAENGGNCELTVPGEVVVTDNGVTIIGYT  313 (509)
T ss_pred             HHHHhccCCCCEEEECCCCCcccCcchHHHHHHHhc-CCCCEEEEEccCCCCCcccccCccceEeECCEEEEEeC
Confidence            32 21 14799999999963      3 48899999 77776521             1123454 788888865

>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy)

Probab=98.43  E-value=2.2e-06  Score=80.27  Aligned_cols=113  Identities=18%  Similarity=0.088  Sum_probs=86.8

Q ss_pred             HHHHHHHcC-CCCCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCcEEEEcCCchhHHHHHHHHh
Q psy1959         150 QIVFSRHAK-LKEKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNKVLEVS  228 (296)
Q Consensus       150 ~~~l~~~~~-~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~  228 (296)
                      +.++.+..+ .-+|++|+|.|. |.+|+.+++.+ +.+|++|++++.++.|...+++.|+..+ .      ..+.+    
T Consensus       189 ~~~i~r~t~~~l~GktVvViG~-G~IG~~va~~a-k~~Ga~ViV~d~d~~R~~~A~~~G~~~~-~------~~e~v----  255 (413)
T cd00401         189 IDGIKRATDVMIAGKVAVVAGY-GDVGKGCAQSL-RGQGARVIVTEVDPICALQAAMEGYEVM-T------MEEAV----  255 (413)
T ss_pred             HHHHHHhcCCCCCCCEEEEECC-CHHHHHHHHHH-HHCCCEEEEEECChhhHHHHHhcCCEEc-c------HHHHH----
Confidence            444444434 368999999997 99999999999 6789999999999999999999998432 1      11111    


Q ss_pred             CCCcccEEEECCCC-ccHHHH-HHHhhccCceE--------EeecccceeeeeEEecccc
Q psy1959         229 GGKYANVVFEAVGG-EDKTDL-IRQKGAWAALT--------FTNEKSLVNKVLEVSGGKY  278 (296)
Q Consensus       229 ~~~g~d~vld~~g~-~~~~~~-~~~lg~~~g~~--------~~~~~~~~~k~~~i~g~~~  278 (296)
                        .++|++++|.|. ..+... ++++ ++++.+        .++...+..+++++.+++.
T Consensus       256 --~~aDVVI~atG~~~~i~~~~l~~m-k~GgilvnvG~~~~eId~~~L~~~el~i~g~~~  312 (413)
T cd00401         256 --KEGDIFVTTTGNKDIITGEHFEQM-KDGAIVCNIGHFDVEIDVKGLKENAVEVVNIKP  312 (413)
T ss_pred             --cCCCEEEECCCCHHHHHHHHHhcC-CCCcEEEEeCCCCCccCHHHHHhhccEEEEccC
Confidence              268999999998 467765 8888 777776        3455677888999999873

The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.

>COG4221 Short-chain alcohol dehydrogenase of unknown specificity [General function prediction only]

Probab=97.90  E-value=7.5e-05  Score=64.37  Aligned_cols=81  Identities=20%  Similarity=0.261  Sum_probs=60.7

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHH-hcCC----cEEEEcCCchhHHHHHHHHhCCC-ccc
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIR-QKGA----WAALTFTNEKSLVNKVLEVSGGK-YAN  234 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~-~~g~----~~~~~~~~~~~~~~~i~~~~~~~-g~d  234 (296)
                      +++.++|+|+++|+|.++++.. ...|++|+.+.|++++++.+. +++.    ...++..+..+....+..+.... .+|
T Consensus         5 ~~kv~lITGASSGiG~A~A~~l-~~~G~~vvl~aRR~drL~~la~~~~~~~~~~~~~DVtD~~~~~~~i~~~~~~~g~iD   83 (246)
T COG4221           5 KGKVALITGASSGIGEATARAL-AEAGAKVVLAARREERLEALADEIGAGAALALALDVTDRAAVEAAIEALPEEFGRID   83 (246)
T ss_pred             CCcEEEEecCcchHHHHHHHHH-HHCCCeEEEEeccHHHHHHHHHhhccCceEEEeeccCCHHHHHHHHHHHHHhhCccc
Confidence            4588999999999999999988 568999999999999998886 4562    12345555345555555444333 599


Q ss_pred             EEEECCCC
Q psy1959         235 VVFEAVGG  242 (296)
Q Consensus       235 ~vld~~g~  242 (296)
                      +.+++.|-
T Consensus        84 iLvNNAGl   91 (246)
T COG4221          84 ILVNNAGL   91 (246)
T ss_pred             EEEecCCC
Confidence            99999984

>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit

Probab=97.70  E-value=0.00042  Score=66.60  Aligned_cols=97  Identities=20%  Similarity=0.265  Sum_probs=70.1

Q ss_pred             CCCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCcEE-EEcCC------------chhHHHHHHH
Q psy1959         160 KEKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAA-LTFTN------------EKSLVNKVLE  226 (296)
Q Consensus       160 ~~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~~~-~~~~~------------~~~~~~~i~~  226 (296)
                      .++++++|.|+ |.+|+++++.+ +.+|++|++++++.++++.++++|+..+ ++..+            ..++.+...+
T Consensus       162 vp~akVlViGa-G~iGl~Aa~~a-k~lGA~V~v~d~~~~rle~a~~lGa~~v~v~~~e~g~~~~gYa~~~s~~~~~~~~~  239 (511)
T TIGR00561       162 VPPAKVLVIGA-GVAGLAAIGAA-NSLGAIVRAFDTRPEVKEQVQSMGAEFLELDFKEEGGSGDGYAKVMSEEFIAAEME  239 (511)
T ss_pred             CCCCEEEEECC-CHHHHHHHHHH-HHCCCEEEEEeCCHHHHHHHHHcCCeEEeccccccccccccceeecCHHHHHHHHH
Confidence            46799999997 99999999999 6789999999999999999999998653 22110            0122322233


Q ss_pred             HhC--CCcccEEEECC---CC-c---cHHHHHHHhhccCceE
Q psy1959         227 VSG--GKYANVVFEAV---GG-E---DKTDLIRQKGAWAALT  259 (296)
Q Consensus       227 ~~~--~~g~d~vld~~---g~-~---~~~~~~~~lg~~~g~~  259 (296)
                      ...  .+++|++|+|+   |. .   ..+..++.+ ++++.+
T Consensus       240 ~~~e~~~~~DIVI~TalipG~~aP~Lit~emv~~M-KpGsvI  280 (511)
T TIGR00561       240 LFAAQAKEVDIIITTALIPGKPAPKLITEEMVDSM-KAGSVI  280 (511)
T ss_pred             HHHHHhCCCCEEEECcccCCCCCCeeehHHHHhhC-CCCCEE
Confidence            222  35799999999   65 2   456778888 655544

In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.

>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional

Probab=97.57  E-value=0.00094  Score=62.92  Aligned_cols=95  Identities=15%  Similarity=0.117  Sum_probs=68.7

Q ss_pred             HHHHHHHHcCCC-CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCcEEEEcCCchhHHHHHHHH
Q psy1959         149 AQIVFSRHAKLK-EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNKVLEV  227 (296)
Q Consensus       149 a~~~l~~~~~~~-~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~  227 (296)
                      +|.++.+..++. .|++++|.|. |.+|+.+++.+ +.+|++|+++++++.+...+...|+. +.      +..    +.
T Consensus       198 ~~~ai~rat~~~l~Gk~VlViG~-G~IG~~vA~~l-r~~Ga~ViV~d~dp~ra~~A~~~G~~-v~------~l~----ea  264 (425)
T PRK05476        198 LLDGIKRATNVLIAGKVVVVAGY-GDVGKGCAQRL-RGLGARVIVTEVDPICALQAAMDGFR-VM------TME----EA  264 (425)
T ss_pred             hHHHHHHhccCCCCCCEEEEECC-CHHHHHHHHHH-HhCCCEEEEEcCCchhhHHHHhcCCE-ec------CHH----HH
Confidence            455554443544 8999999997 99999999999 67899999999988887666666653 11      111    12


Q ss_pred             hCCCcccEEEECCCCc-cHH-HHHHHhhccCceE
Q psy1959         228 SGGKYANVVFEAVGGE-DKT-DLIRQKGAWAALT  259 (296)
Q Consensus       228 ~~~~g~d~vld~~g~~-~~~-~~~~~lg~~~g~~  259 (296)
                      .  .++|+++++.|.. .++ ..+..+ +.++.+
T Consensus       265 l--~~aDVVI~aTG~~~vI~~~~~~~m-K~Gail  295 (425)
T PRK05476        265 A--ELGDIFVTATGNKDVITAEHMEAM-KDGAIL  295 (425)
T ss_pred             H--hCCCEEEECCCCHHHHHHHHHhcC-CCCCEE
Confidence            2  2789999999984 455 567777 666655

>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]

Probab=97.51  E-value=0.00071  Score=59.64  Aligned_cols=83  Identities=20%  Similarity=0.229  Sum_probs=56.6

Q ss_pred             CCCCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHh-c----CCcE-E--EEcCCchhHHHHHHHHhC-
Q psy1959         159 LKEKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQ-K----GAWA-A--LTFTNEKSLVNKVLEVSG-  229 (296)
Q Consensus       159 ~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~-~----g~~~-~--~~~~~~~~~~~~i~~~~~-  229 (296)
                      ...+.+++|+|||+++|...+..+ ...|.+++.+.|+++|+..+.+ +    +... +  .|..+..+......++.. 
T Consensus         3 ~~~~~~~lITGASsGIG~~~A~~l-A~~g~~liLvaR~~~kL~~la~~l~~~~~v~v~vi~~DLs~~~~~~~l~~~l~~~   81 (265)
T COG0300           3 PMKGKTALITGASSGIGAELAKQL-ARRGYNLILVARREDKLEALAKELEDKTGVEVEVIPADLSDPEALERLEDELKER   81 (265)
T ss_pred             CCCCcEEEEECCCchHHHHHHHHH-HHCCCEEEEEeCcHHHHHHHHHHHHHhhCceEEEEECcCCChhHHHHHHHHHHhc
Confidence            356889999999999999866666 3479999999999999887753 2    2222 2  344442333332323322 


Q ss_pred             CCcccEEEECCCC
Q psy1959         230 GKYANVVFEAVGG  242 (296)
Q Consensus       230 ~~g~d~vld~~g~  242 (296)
                      +..+|+.+++.|-
T Consensus        82 ~~~IdvLVNNAG~   94 (265)
T COG0300          82 GGPIDVLVNNAGF   94 (265)
T ss_pred             CCcccEEEECCCc
Confidence            2479999999984

>PRK05993 short chain dehydrogenase; Provisional

Probab=97.39  E-value=0.0011  Score=58.82  Aligned_cols=81  Identities=20%  Similarity=0.322  Sum_probs=57.4

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCcEE-EEcCCchhHHHHHHHHhC--CCcccEEE
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAA-LTFTNEKSLVNKVLEVSG--GKYANVVF  237 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~i~~~~~--~~g~d~vl  237 (296)
                      .+++++|+|++|++|.+.++.+ ...|++|++++++.++.+.+.+.+...+ .+..+..+....+.+...  +..+|+++
T Consensus         3 ~~k~vlItGasggiG~~la~~l-~~~G~~Vi~~~r~~~~~~~l~~~~~~~~~~Dl~d~~~~~~~~~~~~~~~~g~id~li   81 (277)
T PRK05993          3 MKRSILITGCSSGIGAYCARAL-QSDGWRVFATCRKEEDVAALEAEGLEAFQLDYAEPESIAALVAQVLELSGGRLDALF   81 (277)
T ss_pred             CCCEEEEeCCCcHHHHHHHHHH-HHCCCEEEEEECCHHHHHHHHHCCceEEEccCCCHHHHHHHHHHHHHHcCCCccEEE
Confidence            4678999999999999988877 4479999999999888887777665432 344442333333433321  23689999


Q ss_pred             ECCCC
Q psy1959         238 EAVGG  242 (296)
Q Consensus       238 d~~g~  242 (296)
                      ++.|.
T Consensus        82 ~~Ag~   86 (277)
T PRK05993         82 NNGAY   86 (277)
T ss_pred             ECCCc
Confidence            98873

>TIGR00936 ahcY adenosylhomocysteinase

Probab=97.34  E-value=0.003  Score=59.21  Aligned_cols=95  Identities=17%  Similarity=0.087  Sum_probs=67.8

Q ss_pred             HHHHHHHHcC-CCCCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCcEEEEcCCchhHHHHHHHH
Q psy1959         149 AQIVFSRHAK-LKEKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNKVLEV  227 (296)
Q Consensus       149 a~~~l~~~~~-~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~  227 (296)
                      ++.++.+..+ ...|++|+|.|. |.+|+.+++.+ +.+|++|++++.++.+...++..|+.. .   .   ..+.+   
T Consensus       181 ~~~~i~r~t~~~l~Gk~VvViG~-G~IG~~vA~~a-k~~Ga~ViV~d~dp~r~~~A~~~G~~v-~---~---leeal---  248 (406)
T TIGR00936       181 TIDGILRATNLLIAGKTVVVAGY-GWCGKGIAMRA-RGMGARVIVTEVDPIRALEAAMDGFRV-M---T---MEEAA---  248 (406)
T ss_pred             HHHHHHHhcCCCCCcCEEEEECC-CHHHHHHHHHH-hhCcCEEEEEeCChhhHHHHHhcCCEe-C---C---HHHHH---
Confidence            3344434434 368999999997 99999999999 678999999998888777777667622 1   1   11221   


Q ss_pred             hCCCcccEEEECCCCc-cHHH-HHHHhhccCceE
Q psy1959         228 SGGKYANVVFEAVGGE-DKTD-LIRQKGAWAALT  259 (296)
Q Consensus       228 ~~~~g~d~vld~~g~~-~~~~-~~~~lg~~~g~~  259 (296)
                         ++.|++|++.|.. .++. .+..+ +.++.+
T Consensus       249 ---~~aDVVItaTG~~~vI~~~~~~~m-K~Gail  278 (406)
T TIGR00936       249 ---KIGDIFITATGNKDVIRGEHFENM-KDGAIV  278 (406)
T ss_pred             ---hcCCEEEECCCCHHHHHHHHHhcC-CCCcEE
Confidence               2679999999984 4554 77777 666655

This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).

>PRK05693 short chain dehydrogenase; Provisional

Probab=97.31  E-value=0.0018  Score=57.27  Aligned_cols=79  Identities=20%  Similarity=0.243  Sum_probs=56.5

Q ss_pred             cEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCcEE-EEcCCchhHHHHHHHHh-CCCcccEEEECC
Q psy1959         163 QTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAA-LTFTNEKSLVNKVLEVS-GGKYANVVFEAV  240 (296)
Q Consensus       163 ~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~i~~~~-~~~g~d~vld~~  240 (296)
                      ++++|+|++|++|.+.++.+ ...|++|+++++++++.+.+.+.+.... .+..+..++.+.+.+.. ...++|+++++.
T Consensus         2 k~vlItGasggiG~~la~~l-~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~id~vi~~a   80 (274)
T PRK05693          2 PVVLITGCSSGIGRALADAF-KAAGYEVWATARKAEDVEALAAAGFTAVQLDVNDGAALARLAEELEAEHGGLDVLINNA   80 (274)
T ss_pred             CEEEEecCCChHHHHHHHHH-HHCCCEEEEEeCCHHHHHHHHHCCCeEEEeeCCCHHHHHHHHHHHHHhcCCCCEEEECC
Confidence            47999999999999988888 4579999999998888777766654332 45544334444444432 123699999999


Q ss_pred             CC
Q psy1959         241 GG  242 (296)
Q Consensus       241 g~  242 (296)
                      |.
T Consensus        81 g~   82 (274)
T PRK05693         81 GY   82 (274)
T ss_pred             CC
Confidence            83

>PRK06182 short chain dehydrogenase; Validated

Probab=97.31  E-value=0.0018  Score=57.24  Aligned_cols=81  Identities=25%  Similarity=0.281  Sum_probs=57.6

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCcEE-EEcCCchhHHHHHHHHh-CCCcccEEEE
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAA-LTFTNEKSLVNKVLEVS-GGKYANVVFE  238 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~i~~~~-~~~g~d~vld  238 (296)
                      ++++++|+|++|++|.+.++.+ ...|++|+++++++++.+.+.+.+...+ .+..+..++.+.+.+.. ...++|++++
T Consensus         2 ~~k~vlItGasggiG~~la~~l-~~~G~~V~~~~r~~~~l~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~~~id~li~   80 (273)
T PRK06182          2 QKKVALVTGASSGIGKATARRL-AAQGYTVYGAARRVDKMEDLASLGVHPLSLDVTDEASIKAAVDTIIAEEGRIDVLVN   80 (273)
T ss_pred             CCCEEEEECCCChHHHHHHHHH-HHCCCEEEEEeCCHHHHHHHHhCCCeEEEeeCCCHHHHHHHHHHHHHhcCCCCEEEE
Confidence            4678999999999999988887 4579999999998888776665554332 44444344444444332 1237999999


Q ss_pred             CCCC
Q psy1959         239 AVGG  242 (296)
Q Consensus       239 ~~g~  242 (296)
                      +.|.
T Consensus        81 ~ag~   84 (273)
T PRK06182         81 NAGY   84 (273)
T ss_pred             CCCc
Confidence            9984

>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed

Probab=97.30  E-value=0.0035  Score=55.10  Aligned_cols=141  Identities=18%  Similarity=0.208  Sum_probs=91.3

Q ss_pred             CCCCCCCCEEEEecCCCCCcccceEeeeCCceEECCCCCCHHHHhhhccHHHHHHHHHHHHcCCCCCcEEEEEcCCCcHH
Q psy1959          96 EDVLQVGDKVLALNKELLHGFSDQCVVHTNDVFKIPEKMTFEHAASLADSYSTAQIVFSRHAKLKEKQTVLVTAAGGGLG  175 (296)
Q Consensus        96 v~~~~~Gd~V~~~~~~~~g~~~~~~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vlI~Ga~g~vG  175 (296)
                      ...+++||+++..+.     |.+|.. +...++++++++++..+. .+ ........+..  .+.++++|+-.|+ |. |
T Consensus        64 ~~p~~~g~~~~i~p~-----~~~~~~-~~~~~i~i~p~~afgtg~-h~-tt~~~l~~l~~--~~~~~~~VLDiGc-Gs-G  131 (250)
T PRK00517         64 FHPIRIGDRLWIVPS-----WEDPPD-PDEINIELDPGMAFGTGT-HP-TTRLCLEALEK--LVLPGKTVLDVGC-GS-G  131 (250)
T ss_pred             CCCEEEcCCEEEECC-----CcCCCC-CCeEEEEECCCCccCCCC-CH-HHHHHHHHHHh--hcCCCCEEEEeCC-cH-H
Confidence            445889999888765     777754 667889999999877654 11 11122233322  2568899999996 55 8


Q ss_pred             HHHHHHHHHhCCC-EEEEEeCCcchHHHHHhc----CCcEEEEcCCchhHHHHHHHHhCCCcccEEEECCCCc----cHH
Q psy1959         176 LAAVDMATKIYKA-KVIGVCNSEDKTDLIRQK----GAWAALTFTNEKSLVNKVLEVSGGKYANVVFEAVGGE----DKT  246 (296)
Q Consensus       176 ~aa~~la~~~~g~-~Vi~~~~~~~~~~~~~~~----g~~~~~~~~~~~~~~~~i~~~~~~~g~d~vld~~g~~----~~~  246 (296)
                      ..++.++ + .|+ +|++++.++...+.+++.    +....+....            +...+|+++.+...+    .+.
T Consensus       132 ~l~i~~~-~-~g~~~v~giDis~~~l~~A~~n~~~~~~~~~~~~~~------------~~~~fD~Vvani~~~~~~~l~~  197 (250)
T PRK00517        132 ILAIAAA-K-LGAKKVLAVDIDPQAVEAARENAELNGVELNVYLPQ------------GDLKADVIVANILANPLLELAP  197 (250)
T ss_pred             HHHHHHH-H-cCCCeEEEEECCHHHHHHHHHHHHHcCCCceEEEcc------------CCCCcCEEEEcCcHHHHHHHHH
Confidence            8887766 5 455 699999999888777653    3211111111            011589999877653    345


Q ss_pred             HHHHHhhccCceEEeec
Q psy1959         247 DLIRQKGAWAALTFTNE  263 (296)
Q Consensus       247 ~~~~~lg~~~g~~~~~~  263 (296)
                      .+.+.| +++|.+.+..
T Consensus       198 ~~~~~L-kpgG~lilsg  213 (250)
T PRK00517        198 DLARLL-KPGGRLILSG  213 (250)
T ss_pred             HHHHhc-CCCcEEEEEE
Confidence            667777 8899887653

>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase

Probab=97.29  E-value=0.00095  Score=60.64  Aligned_cols=108  Identities=21%  Similarity=0.281  Sum_probs=74.3

Q ss_pred             CceEECCCCCCHHHHhhhccHHHHHHHHHHHHcCC---CCCcEEEEEcCCCcHHHHHHHHHHHhCC-CEEEEEeCCcchH
Q psy1959         125 NDVFKIPEKMTFEHAASLADSYSTAQIVFSRHAKL---KEKQTVLVTAAGGGLGLAAVDMATKIYK-AKVIGVCNSEDKT  200 (296)
Q Consensus       125 ~~~~~iP~~~~~~~aa~l~~~~~ta~~~l~~~~~~---~~g~~vlI~Ga~g~vG~aa~~la~~~~g-~~Vi~~~~~~~~~  200 (296)
                      ..++++|+.++.+.++.. .+.+.++.++......   -++.+|+|.|+ |.+|+.+++.++ ..| .+|++++++.++.
T Consensus       139 ~~a~~~~k~vr~et~i~~-~~~sv~~~Av~~a~~~~~~l~~~~V~ViGa-G~iG~~~a~~L~-~~g~~~V~v~~r~~~ra  215 (311)
T cd05213         139 QKAIKVGKRVRTETGISR-GAVSISSAAVELAEKIFGNLKGKKVLVIGA-GEMGELAAKHLA-AKGVAEITIANRTYERA  215 (311)
T ss_pred             HHHHHHHHHHhhhcCCCC-CCcCHHHHHHHHHHHHhCCccCCEEEEECc-HHHHHHHHHHHH-HcCCCEEEEEeCCHHHH
Confidence            355778888888877643 5677777776432221   37899999997 999999999984 455 4899999988775


Q ss_pred             -HHHHhcCCcEEEEcCCchhHHHHHHHHhCCCcccEEEECCCCccH
Q psy1959         201 -DLIRQKGAWAALTFTNEKSLVNKVLEVSGGKYANVVFEAVGGEDK  245 (296)
Q Consensus       201 -~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~g~d~vld~~g~~~~  245 (296)
                       ++++++|.. ....   .++.    +..  ..+|++|.|++.+..
T Consensus       216 ~~la~~~g~~-~~~~---~~~~----~~l--~~aDvVi~at~~~~~  251 (311)
T cd05213         216 EELAKELGGN-AVPL---DELL----ELL--NEADVVISATGAPHY  251 (311)
T ss_pred             HHHHHHcCCe-EEeH---HHHH----HHH--hcCCEEEECCCCCch
Confidence             555667762 2222   1222    222  257999999998544

Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,

>PRK08324 short chain dehydrogenase; Validated

Probab=97.17  E-value=0.0017  Score=65.36  Aligned_cols=114  Identities=23%  Similarity=0.248  Sum_probs=74.9

Q ss_pred             CcccceEeeeCCceEECCCCCCHHHHhhhccHHHHHHHHHHH--HcCCCCCcEEEEEcCCCcHHHHHHHHHHHhCCCEEE
Q psy1959         114 HGFSDQCVVHTNDVFKIPEKMTFEHAASLADSYSTAQIVFSR--HAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKAKVI  191 (296)
Q Consensus       114 g~~~~~~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~l~~--~~~~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi  191 (296)
                      .++.+|..++...++.+ +.++.+++.            +.+  ..+..+|++++|+|++|++|+++++.+ ...|++|+
T Consensus       385 ~~~~~~~~l~~~~~f~i-~~~~~e~a~------------l~~~~~~~~l~gk~vLVTGasggIG~~la~~L-~~~Ga~Vv  450 (681)
T PRK08324        385 EAVGRYEPLSEQEAFDI-EYWSLEQAK------------LQRMPKPKPLAGKVALVTGAAGGIGKATAKRL-AAEGACVV  450 (681)
T ss_pred             hhcCCccCCChhhhcce-eeehhhhhh------------hhcCCCCcCCCCCEEEEecCCCHHHHHHHHHH-HHCcCEEE
Confidence            45677887887777777 556666664            111  122336899999999999999999888 45799999


Q ss_pred             EEeCCcchHHHHHh-cCC--cE---EEEcCCchhHHHHHHHHh-CCCcccEEEECCC
Q psy1959         192 GVCNSEDKTDLIRQ-KGA--WA---ALTFTNEKSLVNKVLEVS-GGKYANVVFEAVG  241 (296)
Q Consensus       192 ~~~~~~~~~~~~~~-~g~--~~---~~~~~~~~~~~~~i~~~~-~~~g~d~vld~~g  241 (296)
                      +++++.++.+.+.+ ++.  ..   ..+..+.....+.+.+.. ...++|++|++.|
T Consensus       451 l~~r~~~~~~~~~~~l~~~~~v~~v~~Dvtd~~~v~~~~~~~~~~~g~iDvvI~~AG  507 (681)
T PRK08324        451 LADLDEEAAEAAAAELGGPDRALGVACDVTDEAAVQAAFEEAALAFGGVDIVVSNAG  507 (681)
T ss_pred             EEeCCHHHHHHHHHHHhccCcEEEEEecCCCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence            99998887665543 332  11   133344233333333332 1237999999998

>COG3967 DltE Short-chain dehydrogenase involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein) [Cell envelope biogenesis, outer membrane]

Probab=97.15  E-value=0.0015  Score=55.01  Aligned_cols=79  Identities=19%  Similarity=0.215  Sum_probs=56.7

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCc---EEEEcCCc---hhHHHHHHHHhCCCccc
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAW---AALTFTNE---KSLVNKVLEVSGGKYAN  234 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~---~~~~~~~~---~~~~~~i~~~~~~~g~d  234 (296)
                      -|.+|||+|+++|+|++.++-. ...|-+||+..|++++++.++..-..   .+.+..+.   ..+.+++....  -..+
T Consensus         4 tgnTiLITGG~sGIGl~lak~f-~elgN~VIi~gR~e~~L~e~~~~~p~~~t~v~Dv~d~~~~~~lvewLkk~~--P~lN   80 (245)
T COG3967           4 TGNTILITGGASGIGLALAKRF-LELGNTVIICGRNEERLAEAKAENPEIHTEVCDVADRDSRRELVEWLKKEY--PNLN   80 (245)
T ss_pred             cCcEEEEeCCcchhhHHHHHHH-HHhCCEEEEecCcHHHHHHHHhcCcchheeeecccchhhHHHHHHHHHhhC--Cchh
Confidence            4789999999999999988877 56799999999999999999876432   23333331   22333333322  2579


Q ss_pred             EEEECCCC
Q psy1959         235 VVFEAVGG  242 (296)
Q Consensus       235 ~vld~~g~  242 (296)
                      +++++.|-
T Consensus        81 vliNNAGI   88 (245)
T COG3967          81 VLINNAGI   88 (245)
T ss_pred             eeeecccc
Confidence            99999983

>PRK06139 short chain dehydrogenase; Provisional

Probab=97.15  E-value=0.003  Score=57.88  Aligned_cols=81  Identities=20%  Similarity=0.260  Sum_probs=54.9

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHH----HhcCCcEE---EEcCCchhHHHHHHHHhC-CCc
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLI----RQKGAWAA---LTFTNEKSLVNKVLEVSG-GKY  232 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~----~~~g~~~~---~~~~~~~~~~~~i~~~~~-~~g  232 (296)
                      ++++++|+|+++++|.++++.+ ...|++|+++++++++++.+    ++.+....   .+..+.++..+.+.+... ...
T Consensus         6 ~~k~vlITGAs~GIG~aia~~l-a~~G~~Vvl~~R~~~~l~~~~~~~~~~g~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~   84 (330)
T PRK06139          6 HGAVVVITGASSGIGQATAEAF-ARRGARLVLAARDEEALQAVAEECRALGAEVLVVPTDVTDADQVKALATQAASFGGR   84 (330)
T ss_pred             CCCEEEEcCCCCHHHHHHHHHH-HHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHHHhcCC
Confidence            5689999999999999988877 45799999999988877544    33454432   344442333333322211 236


Q ss_pred             ccEEEECCCC
Q psy1959         233 ANVVFEAVGG  242 (296)
Q Consensus       233 ~d~vld~~g~  242 (296)
                      +|+++++.|.
T Consensus        85 iD~lVnnAG~   94 (330)
T PRK06139         85 IDVWVNNVGV   94 (330)
T ss_pred             CCEEEECCCc
Confidence            9999999983

>PRK08306 dipicolinate synthase subunit A; Reviewed

Probab=97.13  E-value=0.006  Score=55.02  Aligned_cols=86  Identities=16%  Similarity=0.166  Sum_probs=63.2

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCcEEEEcCCchhHHHHHHHHhCCCcccEEEECC
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNKVLEVSGGKYANVVFEAV  240 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~g~d~vld~~  240 (296)
                      .+++++|+|. |.+|+.+++.+ +.+|++|++.+++.++...++++|...+ ..   .    .+.+..  ..+|++|+++
T Consensus       151 ~g~kvlViG~-G~iG~~~a~~L-~~~Ga~V~v~~r~~~~~~~~~~~G~~~~-~~---~----~l~~~l--~~aDiVI~t~  218 (296)
T PRK08306        151 HGSNVLVLGF-GRTGMTLARTL-KALGANVTVGARKSAHLARITEMGLSPF-HL---S----ELAEEV--GKIDIIFNTI  218 (296)
T ss_pred             CCCEEEEECC-cHHHHHHHHHH-HHCCCEEEEEECCHHHHHHHHHcCCeee-cH---H----HHHHHh--CCCCEEEECC
Confidence            6899999997 99999999999 5689999999999888888888886432 11   1    222332  2689999998


Q ss_pred             CCc-cHHHHHHHhhccCceE
Q psy1959         241 GGE-DKTDLIRQKGAWAALT  259 (296)
Q Consensus       241 g~~-~~~~~~~~lg~~~g~~  259 (296)
                      ... .....++.+ ++++.+
T Consensus       219 p~~~i~~~~l~~~-~~g~vI  237 (296)
T PRK08306        219 PALVLTKEVLSKM-PPEALI  237 (296)
T ss_pred             ChhhhhHHHHHcC-CCCcEE
Confidence            764 334566667 555444

>PRK07904 short chain dehydrogenase; Provisional

Probab=97.11  E-value=0.0049  Score=54.06  Aligned_cols=84  Identities=21%  Similarity=0.228  Sum_probs=53.7

Q ss_pred             CCCCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcch-HHH----HHhcCC-cE-E--EEcCCchhHHHHHHHHhC
Q psy1959         159 LKEKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDK-TDL----IRQKGA-WA-A--LTFTNEKSLVNKVLEVSG  229 (296)
Q Consensus       159 ~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~-~~~----~~~~g~-~~-~--~~~~~~~~~~~~i~~~~~  229 (296)
                      +.++.+++|+|++|++|.+.++-+.+..|++|+++++++++ .+.    ++..+. .. .  .+..+..+..+.+.+...
T Consensus         5 ~~~~~~vlItGas~giG~~la~~l~~~gg~~V~~~~r~~~~~~~~~~~~l~~~~~~~v~~~~~D~~~~~~~~~~~~~~~~   84 (253)
T PRK07904          5 VGNPQTILLLGGTSEIGLAICERYLKNAPARVVLAALPDDPRRDAAVAQMKAAGASSVEVIDFDALDTDSHPKVIDAAFA   84 (253)
T ss_pred             cCCCcEEEEEcCCcHHHHHHHHHHHhcCCCeEEEEeCCcchhHHHHHHHHHhcCCCceEEEEecCCChHHHHHHHHHHHh
Confidence            45778999999999999998876524335899999988775 433    333332 21 2  333332344444444433


Q ss_pred             CCcccEEEECCCC
Q psy1959         230 GKYANVVFEAVGG  242 (296)
Q Consensus       230 ~~g~d~vld~~g~  242 (296)
                      ...+|+++.+.|.
T Consensus        85 ~g~id~li~~ag~   97 (253)
T PRK07904         85 GGDVDVAIVAFGL   97 (253)
T ss_pred             cCCCCEEEEeeec
Confidence            2479999988875

>PRK08339 short chain dehydrogenase; Provisional

Probab=97.08  E-value=0.0045  Score=54.60  Aligned_cols=81  Identities=20%  Similarity=0.249  Sum_probs=54.1

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHh-c----CCcE-E--EEcCCchhHHHHHHHHhCCCc
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQ-K----GAWA-A--LTFTNEKSLVNKVLEVSGGKY  232 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~-~----g~~~-~--~~~~~~~~~~~~i~~~~~~~g  232 (296)
                      ++++++|+|+++++|.++++.+ ...|++|+++++++++.+.+.+ +    +... .  .+..+..+..+.+.+...-..
T Consensus         7 ~~k~~lItGas~gIG~aia~~l-~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~i~~~~~~~~~~g~   85 (263)
T PRK08339          7 SGKLAFTTASSKGIGFGVARVL-ARAGADVILLSRNEENLKKAREKIKSESNVDVSYIVADLTKREDLERTVKELKNIGE   85 (263)
T ss_pred             CCCEEEEeCCCCcHHHHHHHHH-HHCCCEEEEEeCCHHHHHHHHHHHHhhcCCceEEEEecCCCHHHHHHHHHHHHhhCC
Confidence            5789999999999999988887 4579999999998777654432 1    2221 1  233342334344443322236


Q ss_pred             ccEEEECCCC
Q psy1959         233 ANVVFEAVGG  242 (296)
Q Consensus       233 ~d~vld~~g~  242 (296)
                      +|+++++.|.
T Consensus        86 iD~lv~nag~   95 (263)
T PRK08339         86 PDIFFFSTGG   95 (263)
T ss_pred             CcEEEECCCC
Confidence            8999999874

>PLN02494 adenosylhomocysteinase

Probab=97.08  E-value=0.008  Score=57.17  Aligned_cols=94  Identities=17%  Similarity=0.126  Sum_probs=69.3

Q ss_pred             HHHHHHHcCC-CCCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCcEEEEcCCchhHHHHHHHHh
Q psy1959         150 QIVFSRHAKL-KEKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNKVLEVS  228 (296)
Q Consensus       150 ~~~l~~~~~~-~~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~  228 (296)
                      +.++.+..++ -.|++++|.|. |.+|+.+++.+ +.+|++|+++++++.+...+...|+.. .      +..+.+    
T Consensus       241 ~d~i~r~t~i~LaGKtVvViGy-G~IGr~vA~~a-ka~Ga~VIV~e~dp~r~~eA~~~G~~v-v------~leEal----  307 (477)
T PLN02494        241 PDGLMRATDVMIAGKVAVICGY-GDVGKGCAAAM-KAAGARVIVTEIDPICALQALMEGYQV-L------TLEDVV----  307 (477)
T ss_pred             HHHHHHhcCCccCCCEEEEECC-CHHHHHHHHHH-HHCCCEEEEEeCCchhhHHHHhcCCee-c------cHHHHH----
Confidence            4444444343 57999999997 99999999999 678999999998887777777777642 1      112222    


Q ss_pred             CCCcccEEEECCCCc-c-HHHHHHHhhccCceE
Q psy1959         229 GGKYANVVFEAVGGE-D-KTDLIRQKGAWAALT  259 (296)
Q Consensus       229 ~~~g~d~vld~~g~~-~-~~~~~~~lg~~~g~~  259 (296)
                        ...|+++++.|+. . ....++.| +.++.+
T Consensus       308 --~~ADVVI~tTGt~~vI~~e~L~~M-K~GAiL  337 (477)
T PLN02494        308 --SEADIFVTTTGNKDIIMVDHMRKM-KNNAIV  337 (477)
T ss_pred             --hhCCEEEECCCCccchHHHHHhcC-CCCCEE
Confidence              2579999999985 3 37789999 777666

>PRK05872 short chain dehydrogenase; Provisional

Probab=97.05  E-value=0.004  Score=55.91  Aligned_cols=81  Identities=20%  Similarity=0.126  Sum_probs=55.6

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHH-hcCC--cEE---EEcCCchhHHHHHHHHhC-CCcc
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIR-QKGA--WAA---LTFTNEKSLVNKVLEVSG-GKYA  233 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~-~~g~--~~~---~~~~~~~~~~~~i~~~~~-~~g~  233 (296)
                      ++++++|+|++|++|.++++.+ ...|++|+++++++++.+.+. +++.  ...   .+..+..+..+.+.+... ...+
T Consensus         8 ~gk~vlItGas~gIG~~ia~~l-~~~G~~V~~~~r~~~~l~~~~~~l~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~i   86 (296)
T PRK05872          8 AGKVVVVTGAARGIGAELARRL-HARGAKLALVDLEEAELAALAAELGGDDRVLTVVADVTDLAAMQAAAEEAVERFGGI   86 (296)
T ss_pred             CCCEEEEECCCchHHHHHHHHH-HHCCCEEEEEeCCHHHHHHHHHHhcCCCcEEEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence            5789999999999999988888 557999999999888766553 3432  211   344442334343333321 1369


Q ss_pred             cEEEECCCC
Q psy1959         234 NVVFEAVGG  242 (296)
Q Consensus       234 d~vld~~g~  242 (296)
                      |+++++.|.
T Consensus        87 d~vI~nAG~   95 (296)
T PRK05872         87 DVVVANAGI   95 (296)
T ss_pred             CEEEECCCc
Confidence            999999984

>TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase

Probab=97.04  E-value=0.004  Score=54.71  Aligned_cols=81  Identities=20%  Similarity=0.124  Sum_probs=54.6

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhc-CCcE-E--EEcCCchhHHHHHHHHhC-CCcccE
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQK-GAWA-A--LTFTNEKSLVNKVLEVSG-GKYANV  235 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~-g~~~-~--~~~~~~~~~~~~i~~~~~-~~g~d~  235 (296)
                      ++++++|+|++|++|.++++.+ ...|++|+++++++++.+.+++. +... .  .+..+..+..+.+.+... -..+|+
T Consensus         4 ~~k~vlItGas~gIG~~ia~~l-~~~G~~V~~~~r~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~id~   82 (262)
T TIGR03325         4 KGEVVLVTGGASGLGRAIVDRF-VAEGARVAVLDKSAAGLQELEAAHGDAVVGVEGDVRSLDDHKEAVARCVAAFGKIDC   82 (262)
T ss_pred             CCcEEEEECCCChHHHHHHHHH-HHCCCEEEEEeCCHHHHHHHHhhcCCceEEEEeccCCHHHHHHHHHHHHHHhCCCCE
Confidence            5789999999999999988777 45799999999988877766553 3221 1  233332333343433321 136899


Q ss_pred             EEECCCC
Q psy1959         236 VFEAVGG  242 (296)
Q Consensus       236 vld~~g~  242 (296)
                      ++++.|.
T Consensus        83 li~~Ag~   89 (262)
T TIGR03325        83 LIPNAGI   89 (262)
T ss_pred             EEECCCC
Confidence            9999873

Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase.

>PRK07060 short chain dehydrogenase; Provisional

Probab=97.04  E-value=0.0052  Score=53.08  Aligned_cols=78  Identities=19%  Similarity=0.239  Sum_probs=53.7

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHh-cCCcEE-EEcCCchhHHHHHHHHhCCCcccEEEE
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQ-KGAWAA-LTFTNEKSLVNKVLEVSGGKYANVVFE  238 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~-~g~~~~-~~~~~~~~~~~~i~~~~~~~g~d~vld  238 (296)
                      ++++++|+|++|++|..+++.+ ...|++|++++++.++.+.+.+ .+.... .+..+ .+..+.+.+.  ..++|++|+
T Consensus         8 ~~~~~lItGa~g~iG~~~a~~l-~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~D~~~-~~~v~~~~~~--~~~~d~vi~   83 (245)
T PRK07060          8 SGKSVLVTGASSGIGRACAVAL-AQRGARVVAAARNAAALDRLAGETGCEPLRLDVGD-DAAIRAALAA--AGAFDGLVN   83 (245)
T ss_pred             CCCEEEEeCCcchHHHHHHHHH-HHCCCEEEEEeCCHHHHHHHHHHhCCeEEEecCCC-HHHHHHHHHH--hCCCCEEEE
Confidence            5689999999999999999988 4579999999998877766544 343222 33433 2222222222  236899999


Q ss_pred             CCCC
Q psy1959         239 AVGG  242 (296)
Q Consensus       239 ~~g~  242 (296)
                      +.|.
T Consensus        84 ~ag~   87 (245)
T PRK07060         84 CAGI   87 (245)
T ss_pred             CCCC
Confidence            9985

>PRK08017 oxidoreductase; Provisional

Probab=96.99  E-value=0.0059  Score=53.15  Aligned_cols=79  Identities=23%  Similarity=0.293  Sum_probs=55.2

Q ss_pred             cEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCcEE-EEcCCchhHHHHHHHHh--CCCcccEEEEC
Q psy1959         163 QTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAA-LTFTNEKSLVNKVLEVS--GGKYANVVFEA  239 (296)
Q Consensus       163 ~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~i~~~~--~~~g~d~vld~  239 (296)
                      ++++|+|++|++|.++++.+ ...|++|++++++.++.+.+++.++... .+..+..+..+.+....  .+..+|.++.+
T Consensus         3 k~vlVtGasg~IG~~la~~l-~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~i~~~~~~~~~~ii~~   81 (256)
T PRK08017          3 KSVLITGCSSGIGLEAALEL-KRRGYRVLAACRKPDDVARMNSLGFTGILLDLDDPESVERAADEVIALTDNRLYGLFNN   81 (256)
T ss_pred             CEEEEECCCChHHHHHHHHH-HHCCCEEEEEeCCHHHhHHHHhCCCeEEEeecCCHHHHHHHHHHHHHhcCCCCeEEEEC
Confidence            57999999999999999888 4579999999999888888777765433 33433223233233321  12368899988


Q ss_pred             CCC
Q psy1959         240 VGG  242 (296)
Q Consensus       240 ~g~  242 (296)
                      .|.
T Consensus        82 ag~   84 (256)
T PRK08017         82 AGF   84 (256)
T ss_pred             CCC
Confidence            774

>PRK08177 short chain dehydrogenase; Provisional

Probab=96.98  E-value=0.0061  Score=52.20  Aligned_cols=78  Identities=21%  Similarity=0.248  Sum_probs=53.2

Q ss_pred             cEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCcEE--EEcCCchhHHHHHHHHhCCCcccEEEECC
Q psy1959         163 QTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAA--LTFTNEKSLVNKVLEVSGGKYANVVFEAV  240 (296)
Q Consensus       163 ~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~~~--~~~~~~~~~~~~i~~~~~~~g~d~vld~~  240 (296)
                      ++++|+|++|++|.+.++.+ ...|++|+++++++++.+.+++++....  .+..+..+..+.+..+ ...++|+++.+.
T Consensus         2 k~vlItG~sg~iG~~la~~l-~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~-~~~~id~vi~~a   79 (225)
T PRK08177          2 RTALIIGASRGLGLGLVDRL-LERGWQVTATVRGPQQDTALQALPGVHIEKLDMNDPASLDQLLQRL-QGQRFDLLFVNA   79 (225)
T ss_pred             CEEEEeCCCchHHHHHHHHH-HhCCCEEEEEeCCCcchHHHHhccccceEEcCCCCHHHHHHHHHHh-hcCCCCEEEEcC
Confidence            47999999999999987777 4479999999998887766665432222  3333423333333333 334799999988


Q ss_pred             CC
Q psy1959         241 GG  242 (296)
Q Consensus       241 g~  242 (296)
                      |.
T Consensus        80 g~   81 (225)
T PRK08177         80 GI   81 (225)
T ss_pred             cc
Confidence            74

>PRK07825 short chain dehydrogenase; Provisional

Probab=96.97  E-value=0.0048  Score=54.46  Aligned_cols=81  Identities=20%  Similarity=0.156  Sum_probs=54.5

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHH-hcC-CcE-EEEcCCchhHHHHHHHHhC-CCcccEE
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIR-QKG-AWA-ALTFTNEKSLVNKVLEVSG-GKYANVV  236 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~-~~g-~~~-~~~~~~~~~~~~~i~~~~~-~~g~d~v  236 (296)
                      .+.+++|+|++|++|..+++.+ ...|++|+++++++++.+.+. +++ ... ..+..+..++.+.+.+... ..++|++
T Consensus         4 ~~~~ilVtGasggiG~~la~~l-~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~l   82 (273)
T PRK07825          4 RGKVVAITGGARGIGLATARAL-AALGARVAIGDLDEALAKETAAELGLVVGGPLDVTDPASFAAFLDAVEADLGPIDVL   82 (273)
T ss_pred             CCCEEEEeCCCchHHHHHHHHH-HHCCCEEEEEECCHHHHHHHHHHhccceEEEccCCCHHHHHHHHHHHHHHcCCCCEE
Confidence            3678999999999999988877 447999999999888776553 333 211 2344443444443443321 1368999


Q ss_pred             EECCCC
Q psy1959         237 FEAVGG  242 (296)
Q Consensus       237 ld~~g~  242 (296)
                      +++.|.
T Consensus        83 i~~ag~   88 (273)
T PRK07825         83 VNNAGV   88 (273)
T ss_pred             EECCCc
Confidence            999884

>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional

Probab=96.97  E-value=0.0052  Score=53.93  Aligned_cols=81  Identities=22%  Similarity=0.147  Sum_probs=55.1

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHh-cCCc-EE--EEcCCchhHHHHHHHHhC-CCcccE
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQ-KGAW-AA--LTFTNEKSLVNKVLEVSG-GKYANV  235 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~-~g~~-~~--~~~~~~~~~~~~i~~~~~-~~g~d~  235 (296)
                      ++++++|+|+++++|.++++.+ ...|++|+++++++++.+.+.+ .+.. ..  .+..+..+....+.+... ...+|+
T Consensus         5 ~~k~vlVtGas~gIG~~ia~~l-~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~id~   83 (263)
T PRK06200          5 HGQVALITGGGSGIGRALVERF-LAEGARVAVLERSAEKLASLRQRFGDHVLVVEGDVTSYADNQRAVDQTVDAFGKLDC   83 (263)
T ss_pred             CCCEEEEeCCCchHHHHHHHHH-HHCCCEEEEEeCCHHHHHHHHHHhCCcceEEEccCCCHHHHHHHHHHHHHhcCCCCE
Confidence            5789999999999999988888 4579999999998887776654 3321 11  233332334444443321 236899


Q ss_pred             EEECCCC
Q psy1959         236 VFEAVGG  242 (296)
Q Consensus       236 vld~~g~  242 (296)
                      ++++.|.
T Consensus        84 li~~ag~   90 (263)
T PRK06200         84 FVGNAGI   90 (263)
T ss_pred             EEECCCC
Confidence            9999884

>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=96.97  E-value=0.015  Score=50.02  Aligned_cols=81  Identities=20%  Similarity=0.202  Sum_probs=53.8

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHH-hc---CCcEEE--EcCCchhHHHHHHHHhC-CCcc
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIR-QK---GAWAAL--TFTNEKSLVNKVLEVSG-GKYA  233 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~-~~---g~~~~~--~~~~~~~~~~~i~~~~~-~~g~  233 (296)
                      ++++++|+|++|++|..+++.+ ...|++|+.+++++++.+.+. +.   +....+  +..+..+..+.+.+... -.++
T Consensus         4 ~~~~vlItGa~g~iG~~~a~~l-~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~i   82 (238)
T PRK05786          4 KGKKVAIIGVSEGLGYAVAYFA-LKEGAQVCINSRNENKLKRMKKTLSKYGNIHYVVGDVSSTESARNVIEKAAKVLNAI   82 (238)
T ss_pred             CCcEEEEECCCchHHHHHHHHH-HHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEECCCCCHHHHHHHHHHHHHHhCCC
Confidence            4689999999999999999999 557999999999888776552 22   221222  22332333333333211 1368


Q ss_pred             cEEEECCCC
Q psy1959         234 NVVFEAVGG  242 (296)
Q Consensus       234 d~vld~~g~  242 (296)
                      |.++.+.|.
T Consensus        83 d~ii~~ag~   91 (238)
T PRK05786         83 DGLVVTVGG   91 (238)
T ss_pred             CEEEEcCCC
Confidence            999998874

>PRK07831 short chain dehydrogenase; Provisional

Probab=96.91  E-value=0.0078  Score=52.79  Aligned_cols=83  Identities=24%  Similarity=0.154  Sum_probs=54.2

Q ss_pred             CCCCcEEEEEcCCC-cHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHh-----cCCcEE----EEcCCchhHHHHHHHHh
Q psy1959         159 LKEKQTVLVTAAGG-GLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQ-----KGAWAA----LTFTNEKSLVNKVLEVS  228 (296)
Q Consensus       159 ~~~g~~vlI~Ga~g-~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~-----~g~~~~----~~~~~~~~~~~~i~~~~  228 (296)
                      +.++++++|+|++| ++|.++++.+ ...|++|+++++++++.+...+     .+...+    .+..+..+..+.+.+..
T Consensus        14 ~~~~k~vlItG~sg~gIG~~ia~~l-~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~   92 (262)
T PRK07831         14 LLAGKVVLVTAAAGTGIGSATARRA-LEEGARVVISDIHERRLGETADELAAELGLGRVEAVVCDVTSEAQVDALIDAAV   92 (262)
T ss_pred             ccCCCEEEEECCCcccHHHHHHHHH-HHcCCEEEEEeCCHHHHHHHHHHHHHhcCCceEEEEEccCCCHHHHHHHHHHHH
Confidence            34578999999986 8999988888 5579999999988776654432     342222    23333233333333332


Q ss_pred             C-CCcccEEEECCCC
Q psy1959         229 G-GKYANVVFEAVGG  242 (296)
Q Consensus       229 ~-~~g~d~vld~~g~  242 (296)
                      . ...+|+++++.|.
T Consensus        93 ~~~g~id~li~~ag~  107 (262)
T PRK07831         93 ERLGRLDVLVNNAGL  107 (262)
T ss_pred             HHcCCCCEEEECCCC
Confidence            1 1368999999984

>PRK06057 short chain dehydrogenase; Provisional

Probab=96.88  E-value=0.0083  Score=52.37  Aligned_cols=81  Identities=16%  Similarity=0.171  Sum_probs=54.8

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHH-hcCCcE-EEEcCCchhHHHHHHHHh-CCCcccEEE
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIR-QKGAWA-ALTFTNEKSLVNKVLEVS-GGKYANVVF  237 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~-~~g~~~-~~~~~~~~~~~~~i~~~~-~~~g~d~vl  237 (296)
                      ++++++|+|++|++|.++++.+ ...|++|+++++++.+.+.+. +++... ..+..+..+..+.+.+.. ....+|+++
T Consensus         6 ~~~~vlItGasggIG~~~a~~l-~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~vi   84 (255)
T PRK06057          6 AGRVAVITGGGSGIGLATARRL-AAEGATVVVGDIDPEAGKAAADEVGGLFVPTDVTDEDAVNALFDTAAETYGSVDIAF   84 (255)
T ss_pred             CCCEEEEECCCchHHHHHHHHH-HHcCCEEEEEeCCHHHHHHHHHHcCCcEEEeeCCCHHHHHHHHHHHHHHcCCCCEEE
Confidence            5789999999999999988888 457999999998877765543 344322 234444233333333332 123689999


Q ss_pred             ECCCC
Q psy1959         238 EAVGG  242 (296)
Q Consensus       238 d~~g~  242 (296)
                      .+.|.
T Consensus        85 ~~ag~   89 (255)
T PRK06057         85 NNAGI   89 (255)
T ss_pred             ECCCc
Confidence            98874

>PRK12742 oxidoreductase; Provisional

Probab=96.85  E-value=0.0098  Score=51.09  Aligned_cols=78  Identities=21%  Similarity=0.225  Sum_probs=50.1

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeC-CcchHHHH-HhcCCcEE-EEcCCchhHHHHHHHHhCCCcccEEE
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCN-SEDKTDLI-RQKGAWAA-LTFTNEKSLVNKVLEVSGGKYANVVF  237 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~-~~~~~~~~-~~~g~~~~-~~~~~~~~~~~~i~~~~~~~g~d~vl  237 (296)
                      ++++++|+|++|++|.++++.+ ...|++|+.+.+ ++++.+.+ .+.+.... .+..+...+.+.+.+   ...+|+++
T Consensus         5 ~~k~vlItGasggIG~~~a~~l-~~~G~~v~~~~~~~~~~~~~l~~~~~~~~~~~D~~~~~~~~~~~~~---~~~id~li   80 (237)
T PRK12742          5 TGKKVLVLGGSRGIGAAIVRRF-VTDGANVRFTYAGSKDAAERLAQETGATAVQTDSADRDAVIDVVRK---SGALDILV   80 (237)
T ss_pred             CCCEEEEECCCChHHHHHHHHH-HHCCCEEEEecCCCHHHHHHHHHHhCCeEEecCCCCHHHHHHHHHH---hCCCcEEE
Confidence            4789999999999999988887 457999887754 44444444 34454322 233332233333322   23689999


Q ss_pred             ECCCC
Q psy1959         238 EAVGG  242 (296)
Q Consensus       238 d~~g~  242 (296)
                      ++.|.
T Consensus        81 ~~ag~   85 (237)
T PRK12742         81 VNAGI   85 (237)
T ss_pred             ECCCC
Confidence            99874

>PRK09072 short chain dehydrogenase; Provisional

Probab=96.84  E-value=0.0082  Score=52.67  Aligned_cols=81  Identities=20%  Similarity=0.227  Sum_probs=52.8

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhc---CCcE-E--EEcCCchhHHHHHHHHhCCCccc
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQK---GAWA-A--LTFTNEKSLVNKVLEVSGGKYAN  234 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~---g~~~-~--~~~~~~~~~~~~i~~~~~~~g~d  234 (296)
                      ++.+++|+|++|++|...+..+ ...|++|+++++++++.+.+...   +... .  .+..+..+..+.+........+|
T Consensus         4 ~~~~vlItG~s~~iG~~ia~~l-~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~~id   82 (263)
T PRK09072          4 KDKRVLLTGASGGIGQALAEAL-AAAGARLLLVGRNAEKLEALAARLPYPGRHRWVVADLTSEAGREAVLARAREMGGIN   82 (263)
T ss_pred             CCCEEEEECCCchHHHHHHHHH-HHCCCEEEEEECCHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHhcCCCC
Confidence            4678999999999999988877 45799999999988776655421   2111 1  23333233333333222224689


Q ss_pred             EEEECCCC
Q psy1959         235 VVFEAVGG  242 (296)
Q Consensus       235 ~vld~~g~  242 (296)
                      +++.+.|.
T Consensus        83 ~lv~~ag~   90 (263)
T PRK09072         83 VLINNAGV   90 (263)
T ss_pred             EEEECCCC
Confidence            99999885

>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional

Probab=96.84  E-value=0.0034  Score=61.78  Aligned_cols=79  Identities=18%  Similarity=0.182  Sum_probs=56.5

Q ss_pred             CCCCCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCC---------------------cchHHHHHhcCCcEEEEcCC
Q psy1959         158 KLKEKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNS---------------------EDKTDLIRQKGAWAALTFTN  216 (296)
Q Consensus       158 ~~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~---------------------~~~~~~~~~~g~~~~~~~~~  216 (296)
                      ..++|++|+|.|+ |+.|+++++.+ +..|++|++++..                     +++++.++++|++..++...
T Consensus       133 ~~~~g~~V~VIGa-GpaGL~aA~~l-~~~G~~V~v~e~~~~~GG~l~~gip~~~~~~~~~~~~l~~~~~~Gv~~~~~~~~  210 (564)
T PRK12771        133 APDTGKRVAVIGG-GPAGLSAAYHL-RRMGHAVTIFEAGPKLGGMMRYGIPAYRLPREVLDAEIQRILDLGVEVRLGVRV  210 (564)
T ss_pred             CCCCCCEEEEECC-CHHHHHHHHHH-HHCCCeEEEEecCCCCCCeeeecCCCccCCHHHHHHHHHHHHHCCCEEEeCCEE
Confidence            4678999999997 99999999999 5689999998843                     34567778889876654321


Q ss_pred             chhH-HHHHHHHhCCCcccEEEECCCCc
Q psy1959         217 EKSL-VNKVLEVSGGKYANVVFEAVGGE  243 (296)
Q Consensus       217 ~~~~-~~~i~~~~~~~g~d~vld~~g~~  243 (296)
                      ..+. .+.+     ..++|.+|+++|..
T Consensus       211 ~~~~~~~~~-----~~~~D~Vi~AtG~~  233 (564)
T PRK12771        211 GEDITLEQL-----EGEFDAVFVAIGAQ  233 (564)
T ss_pred             CCcCCHHHH-----HhhCCEEEEeeCCC
Confidence            0111 1111     12689999999973

>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=96.83  E-value=0.0062  Score=52.71  Aligned_cols=81  Identities=17%  Similarity=0.179  Sum_probs=52.7

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHh-cC--CcE-E--EEcCCchhHHHHHHHHh-CCCcc
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQ-KG--AWA-A--LTFTNEKSLVNKVLEVS-GGKYA  233 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~-~g--~~~-~--~~~~~~~~~~~~i~~~~-~~~g~  233 (296)
                      ++.+++|+|++|++|..+++.+ ...|++|++++++.++.+.+.. +.  ... .  .+..+..++...+.+.. ....+
T Consensus         4 ~~~~vlItGasg~iG~~l~~~l-~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~   82 (251)
T PRK07231          4 EGKVAIVTGASSGIGEGIARRF-AAEGARVVVTDRNEEAAERVAAEILAGGRAIAVAADVSDEADVEAAVAAALERFGSV   82 (251)
T ss_pred             CCcEEEEECCCChHHHHHHHHH-HHCCCEEEEEeCCHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHhCCC
Confidence            4679999999999999888777 4579999999998877655432 22  211 1  22333233333333321 12368


Q ss_pred             cEEEECCCC
Q psy1959         234 NVVFEAVGG  242 (296)
Q Consensus       234 d~vld~~g~  242 (296)
                      |+++.+.|.
T Consensus        83 d~vi~~ag~   91 (251)
T PRK07231         83 DILVNNAGT   91 (251)
T ss_pred             CEEEECCCC
Confidence            999999885

>PRK07024 short chain dehydrogenase; Provisional

Probab=96.82  E-value=0.0072  Score=52.86  Aligned_cols=80  Identities=16%  Similarity=0.131  Sum_probs=52.5

Q ss_pred             CcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHh-cCC--cE-E--EEcCCchhHHHHHHHHhC-CCccc
Q psy1959         162 KQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQ-KGA--WA-A--LTFTNEKSLVNKVLEVSG-GKYAN  234 (296)
Q Consensus       162 g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~-~g~--~~-~--~~~~~~~~~~~~i~~~~~-~~g~d  234 (296)
                      +.+++|+|++|++|.+.++.+ ...|++|++++++.++.+.+.+ ...  .. .  .+..+..+..+.+.+... ...+|
T Consensus         2 ~~~vlItGas~gIG~~la~~l-~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~i~~~~~~~~~~~g~id   80 (257)
T PRK07024          2 PLKVFITGASSGIGQALAREY-ARQGATLGLVARRTDALQAFAARLPKAARVSVYAADVRDADALAAAAADFIAAHGLPD   80 (257)
T ss_pred             CCEEEEEcCCcHHHHHHHHHH-HHCCCEEEEEeCCHHHHHHHHHhcccCCeeEEEEcCCCCHHHHHHHHHHHHHhCCCCC
Confidence            468999999999999988877 4479999999998877665543 211  11 1  233332344444443322 12589


Q ss_pred             EEEECCCC
Q psy1959         235 VVFEAVGG  242 (296)
Q Consensus       235 ~vld~~g~  242 (296)
                      +++.+.|.
T Consensus        81 ~lv~~ag~   88 (257)
T PRK07024         81 VVIANAGI   88 (257)
T ss_pred             EEEECCCc
Confidence            99999874

>PRK06180 short chain dehydrogenase; Provisional

Probab=96.82  E-value=0.0066  Score=53.84  Aligned_cols=81  Identities=22%  Similarity=0.192  Sum_probs=54.5

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCc-E-E--EEcCCchhHHHHHHHHhC-CCcccE
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAW-A-A--LTFTNEKSLVNKVLEVSG-GKYANV  235 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~-~-~--~~~~~~~~~~~~i~~~~~-~~g~d~  235 (296)
                      .+++++|+|++|++|.+.++.+ ...|++|++++++.++.+.+.+.... . .  .+..+.....+.+.+... -..+|+
T Consensus         3 ~~~~vlVtGasggiG~~la~~l-~~~G~~V~~~~r~~~~~~~l~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~~~~d~   81 (277)
T PRK06180          3 SMKTWLITGVSSGFGRALAQAA-LAAGHRVVGTVRSEAARADFEALHPDRALARLLDVTDFDAIDAVVADAEATFGPIDV   81 (277)
T ss_pred             CCCEEEEecCCChHHHHHHHHH-HhCcCEEEEEeCCHHHHHHHHhhcCCCeeEEEccCCCHHHHHHHHHHHHHHhCCCCE
Confidence            4578999999999999988877 45799999999988877666553221 1 1  233332333333333221 125899


Q ss_pred             EEECCCC
Q psy1959         236 VFEAVGG  242 (296)
Q Consensus       236 vld~~g~  242 (296)
                      ++++.|.
T Consensus        82 vv~~ag~   88 (277)
T PRK06180         82 LVNNAGY   88 (277)
T ss_pred             EEECCCc
Confidence            9999885

>PRK06953 short chain dehydrogenase; Provisional

Probab=96.82  E-value=0.012  Score=50.31  Aligned_cols=78  Identities=22%  Similarity=0.263  Sum_probs=54.0

Q ss_pred             cEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCcE-EEEcCCchhHHHHHHHHhCCCcccEEEECCC
Q psy1959         163 QTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWA-ALTFTNEKSLVNKVLEVSGGKYANVVFEAVG  241 (296)
Q Consensus       163 ~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~i~~~~~~~g~d~vld~~g  241 (296)
                      ++++|+|++|++|..+++.+ ...|++|++++++.++.+.++..+... ..+..+.....+.+.+. ....+|+++.+.|
T Consensus         2 ~~vlvtG~sg~iG~~la~~L-~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~-~~~~~d~vi~~ag   79 (222)
T PRK06953          2 KTVLIVGASRGIGREFVRQY-RADGWRVIATARDAAALAALQALGAEALALDVADPASVAGLAWKL-DGEALDAAVYVAG   79 (222)
T ss_pred             ceEEEEcCCCchhHHHHHHH-HhCCCEEEEEECCHHHHHHHHhccceEEEecCCCHHHHHHHHHHh-cCCCCCEEEECCC
Confidence            47899999999999988876 446999999999888777776665432 23344423333322233 3347999999887


Q ss_pred             C
Q psy1959         242 G  242 (296)
Q Consensus       242 ~  242 (296)
                      .
T Consensus        80 ~   80 (222)
T PRK06953         80 V   80 (222)
T ss_pred             c
Confidence            5

>PRK06196 oxidoreductase; Provisional

Probab=96.81  E-value=0.0084  Score=54.32  Aligned_cols=81  Identities=19%  Similarity=0.161  Sum_probs=53.5

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHH-hcC-CcE-EEEcCCchhHHHHHHHHhC-CCcccEE
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIR-QKG-AWA-ALTFTNEKSLVNKVLEVSG-GKYANVV  236 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~-~~g-~~~-~~~~~~~~~~~~~i~~~~~-~~g~d~v  236 (296)
                      .+++++|+|++|++|.+++..+ ...|++|++++++.++.+.+. ++. ... ..+..+..+..+.+.+... ..++|++
T Consensus        25 ~~k~vlITGasggIG~~~a~~L-~~~G~~Vv~~~R~~~~~~~~~~~l~~v~~~~~Dl~d~~~v~~~~~~~~~~~~~iD~l  103 (315)
T PRK06196         25 SGKTAIVTGGYSGLGLETTRAL-AQAGAHVIVPARRPDVAREALAGIDGVEVVMLDLADLESVRAFAERFLDSGRRIDIL  103 (315)
T ss_pred             CCCEEEEeCCCchHHHHHHHHH-HHCCCEEEEEeCCHHHHHHHHHHhhhCeEEEccCCCHHHHHHHHHHHHhcCCCCCEE
Confidence            5689999999999999988777 457999999999877765443 221 211 1333442333333433321 2479999


Q ss_pred             EECCCC
Q psy1959         237 FEAVGG  242 (296)
Q Consensus       237 ld~~g~  242 (296)
                      +++.|.
T Consensus       104 i~nAg~  109 (315)
T PRK06196        104 INNAGV  109 (315)
T ss_pred             EECCCC
Confidence            999873

>PLN02780 ketoreductase/ oxidoreductase

Probab=96.80  E-value=0.0099  Score=54.17  Aligned_cols=81  Identities=20%  Similarity=0.181  Sum_probs=53.7

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHh----c-C-CcE---EEEcCC-chhHHHHHHHHhCC
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQ----K-G-AWA---ALTFTN-EKSLVNKVLEVSGG  230 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~----~-g-~~~---~~~~~~-~~~~~~~i~~~~~~  230 (296)
                      .|++++|+|+++++|.+.+... ...|++|+++++++++.+.+.+    . + ...   ..+..+ ..+..+.+.+..++
T Consensus        52 ~g~~~lITGAs~GIG~alA~~L-a~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~l~~~~~~  130 (320)
T PLN02780         52 YGSWALVTGPTDGIGKGFAFQL-ARKGLNLVLVARNPDKLKDVSDSIQSKYSKTQIKTVVVDFSGDIDEGVKRIKETIEG  130 (320)
T ss_pred             cCCEEEEeCCCcHHHHHHHHHH-HHCCCCEEEEECCHHHHHHHHHHHHHHCCCcEEEEEEEECCCCcHHHHHHHHHHhcC
Confidence            5899999999999999877666 3469999999999888765432    1 1 111   123322 12334445555444


Q ss_pred             CcccEEEECCCC
Q psy1959         231 KYANVVFEAVGG  242 (296)
Q Consensus       231 ~g~d~vld~~g~  242 (296)
                      ..+|+++++.|.
T Consensus       131 ~didilVnnAG~  142 (320)
T PLN02780        131 LDVGVLINNVGV  142 (320)
T ss_pred             CCccEEEEecCc
Confidence            457799998874

>PRK08267 short chain dehydrogenase; Provisional

Probab=96.77  E-value=0.0096  Score=52.09  Aligned_cols=79  Identities=19%  Similarity=0.213  Sum_probs=53.6

Q ss_pred             cEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHh-cC-Cc-E--EEEcCCchhHHHHHHHHhC--CCcccE
Q psy1959         163 QTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQ-KG-AW-A--ALTFTNEKSLVNKVLEVSG--GKYANV  235 (296)
Q Consensus       163 ~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~-~g-~~-~--~~~~~~~~~~~~~i~~~~~--~~g~d~  235 (296)
                      ++++|+|++|++|...++.+ ...|++|++++++.++.+.+.+ .+ .. .  ..+..+..+..+.+.+...  ...+|+
T Consensus         2 k~vlItGasg~iG~~la~~l-~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~~id~   80 (260)
T PRK08267          2 KSIFITGAASGIGRATALLF-AAEGWRVGAYDINEAGLAALAAELGAGNAWTGALDVTDRAAWDAALADFAAATGGRLDV   80 (260)
T ss_pred             cEEEEeCCCchHHHHHHHHH-HHCCCeEEEEeCCHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHHcCCCCCE
Confidence            47999999999999988877 4479999999998887776644 22 11 1  2344442344444443321  246899


Q ss_pred             EEECCCC
Q psy1959         236 VFEAVGG  242 (296)
Q Consensus       236 vld~~g~  242 (296)
                      ++.+.|.
T Consensus        81 vi~~ag~   87 (260)
T PRK08267         81 LFNNAGI   87 (260)
T ss_pred             EEECCCC
Confidence            9999985

>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases

Probab=96.77  E-value=0.0074  Score=47.81  Aligned_cols=72  Identities=21%  Similarity=0.311  Sum_probs=51.0

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCC-EEEEEeCCcchHHHHHh-cCC--cEEEEcCCchhHHHHHHHHhCCCcccEE
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKA-KVIGVCNSEDKTDLIRQ-KGA--WAALTFTNEKSLVNKVLEVSGGKYANVV  236 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~-~Vi~~~~~~~~~~~~~~-~g~--~~~~~~~~~~~~~~~i~~~~~~~g~d~v  236 (296)
                      ++.+++|.|+ |+.|.+++..+ ...|+ +|+++.|+.+|.+.+.+ ++.  .....+.+   +.+.+      ..+|++
T Consensus        11 ~~~~vlviGa-Gg~ar~v~~~L-~~~g~~~i~i~nRt~~ra~~l~~~~~~~~~~~~~~~~---~~~~~------~~~Div   79 (135)
T PF01488_consen   11 KGKRVLVIGA-GGAARAVAAAL-AALGAKEITIVNRTPERAEALAEEFGGVNIEAIPLED---LEEAL------QEADIV   79 (135)
T ss_dssp             TTSEEEEESS-SHHHHHHHHHH-HHTTSSEEEEEESSHHHHHHHHHHHTGCSEEEEEGGG---HCHHH------HTESEE
T ss_pred             CCCEEEEECC-HHHHHHHHHHH-HHcCCCEEEEEECCHHHHHHHHHHcCccccceeeHHH---HHHHH------hhCCeE
Confidence            6899999997 99999998888 45688 59999999998877654 422  12344433   21111      268999


Q ss_pred             EECCCCc
Q psy1959         237 FEAVGGE  243 (296)
Q Consensus       237 ld~~g~~  243 (296)
                      ++|++..
T Consensus        80 I~aT~~~   86 (135)
T PF01488_consen   80 INATPSG   86 (135)
T ss_dssp             EE-SSTT
T ss_pred             EEecCCC
Confidence            9998863

Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....

>PRK06949 short chain dehydrogenase; Provisional

Probab=96.74  E-value=0.012  Score=51.27  Aligned_cols=81  Identities=22%  Similarity=0.269  Sum_probs=54.2

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhc----CCc-EE--EEcCCchhHHHHHHHHh-CCCc
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQK----GAW-AA--LTFTNEKSLVNKVLEVS-GGKY  232 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~----g~~-~~--~~~~~~~~~~~~i~~~~-~~~g  232 (296)
                      .+++++|+|++|++|.+++..+ ...|++|+++++++++.+.+.+.    +.. ..  .+..+..+..+.+.+.. ....
T Consensus         8 ~~k~ilItGasg~IG~~~a~~l-~~~G~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   86 (258)
T PRK06949          8 EGKVALVTGASSGLGARFAQVL-AQAGAKVVLASRRVERLKELRAEIEAEGGAAHVVSLDVTDYQSIKAAVAHAETEAGT   86 (258)
T ss_pred             CCCEEEEECCCcHHHHHHHHHH-HHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHhcCC
Confidence            5789999999999999988888 45799999999988876555331    211 12  23333233433333321 1236


Q ss_pred             ccEEEECCCC
Q psy1959         233 ANVVFEAVGG  242 (296)
Q Consensus       233 ~d~vld~~g~  242 (296)
                      +|+++++.|.
T Consensus        87 ~d~li~~ag~   96 (258)
T PRK06949         87 IDILVNNSGV   96 (258)
T ss_pred             CCEEEECCCC
Confidence            8999999984

>PRK12828 short chain dehydrogenase; Provisional

Probab=96.73  E-value=0.012  Score=50.37  Aligned_cols=81  Identities=16%  Similarity=0.166  Sum_probs=51.8

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHH----HHhcCCcEE-EEcCCchhHHHHHHHHhC-CCccc
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDL----IRQKGAWAA-LTFTNEKSLVNKVLEVSG-GKYAN  234 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~----~~~~g~~~~-~~~~~~~~~~~~i~~~~~-~~g~d  234 (296)
                      ++++++|+|++|++|..+++.+ ...|++|+.++++.++...    ++..+...+ .+..+..+..+.+.+... -.++|
T Consensus         6 ~~k~vlItGatg~iG~~la~~l-~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~d   84 (239)
T PRK12828          6 QGKVVAITGGFGGLGRATAAWL-AARGARVALIGRGAAPLSQTLPGVPADALRIGGIDLVDPQAARRAVDEVNRQFGRLD   84 (239)
T ss_pred             CCCEEEEECCCCcHhHHHHHHH-HHCCCeEEEEeCChHhHHHHHHHHhhcCceEEEeecCCHHHHHHHHHHHHHHhCCcC
Confidence            4789999999999999988877 4569999999987765432    222333221 333332333333333221 12689


Q ss_pred             EEEECCCC
Q psy1959         235 VVFEAVGG  242 (296)
Q Consensus       235 ~vld~~g~  242 (296)
                      +++.+.|.
T Consensus        85 ~vi~~ag~   92 (239)
T PRK12828         85 ALVNIAGA   92 (239)
T ss_pred             EEEECCcc
Confidence            99998874

>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=96.73  E-value=0.011  Score=51.05  Aligned_cols=81  Identities=16%  Similarity=0.168  Sum_probs=53.3

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHH----hcCCcEE---EEcCCchhHHHHHHHHhC-CCc
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIR----QKGAWAA---LTFTNEKSLVNKVLEVSG-GKY  232 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~----~~g~~~~---~~~~~~~~~~~~i~~~~~-~~g  232 (296)
                      ++++++|+|++|++|+.+++.+ ...|++|+.+++++++.+.+.    +.+....   .+..+..+..+.+..... ...
T Consensus         4 ~~~~~lItG~~g~iG~~~a~~l-~~~G~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   82 (253)
T PRK08217          4 KDKVIVITGGAQGLGRAMAEYL-AQKGAKLALIDLNQEKLEEAVAECGALGTEVRGYAANVTDEEDVEATFAQIAEDFGQ   82 (253)
T ss_pred             CCCEEEEECCCchHHHHHHHHH-HHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence            5789999999999999999888 447999999998877655442    2343322   222332333333333321 136


Q ss_pred             ccEEEECCCC
Q psy1959         233 ANVVFEAVGG  242 (296)
Q Consensus       233 ~d~vld~~g~  242 (296)
                      +|.+|.+.|.
T Consensus        83 id~vi~~ag~   92 (253)
T PRK08217         83 LNGLINNAGI   92 (253)
T ss_pred             CCEEEECCCc
Confidence            8999999883

>PRK06841 short chain dehydrogenase; Provisional

Probab=96.73  E-value=0.01  Score=51.64  Aligned_cols=81  Identities=19%  Similarity=0.189  Sum_probs=52.8

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCcE----EEEcCCchhHHHHHHHHhC-CCcccE
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWA----ALTFTNEKSLVNKVLEVSG-GKYANV  235 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~~----~~~~~~~~~~~~~i~~~~~-~~g~d~  235 (296)
                      ++++++|+|++|++|..+++.+ ...|++|+.++++++..+...+.....    ..+..+..+....+.+... ...+|+
T Consensus        14 ~~k~vlItGas~~IG~~la~~l-~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~~d~   92 (255)
T PRK06841         14 SGKVAVVTGGASGIGHAIAELF-AAKGARVALLDRSEDVAEVAAQLLGGNAKGLVCDVSDSQSVEAAVAAVISAFGRIDI   92 (255)
T ss_pred             CCCEEEEECCCChHHHHHHHHH-HHCCCEEEEEeCCHHHHHHHHHhhCCceEEEEecCCCHHHHHHHHHHHHHHhCCCCE
Confidence            5789999999999999988877 457999999998876555444432111    1333332333333333211 136899


Q ss_pred             EEECCCC
Q psy1959         236 VFEAVGG  242 (296)
Q Consensus       236 vld~~g~  242 (296)
                      ++.+.|.
T Consensus        93 vi~~ag~   99 (255)
T PRK06841         93 LVNSAGV   99 (255)
T ss_pred             EEECCCC
Confidence            9999984

>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional

Probab=96.72  E-value=0.0089  Score=58.29  Aligned_cols=81  Identities=17%  Similarity=0.224  Sum_probs=56.1

Q ss_pred             HHcCCCCCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHh---------cCC-----cEE--EEcCCch
Q psy1959         155 RHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQ---------KGA-----WAA--LTFTNEK  218 (296)
Q Consensus       155 ~~~~~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~---------~g~-----~~~--~~~~~~~  218 (296)
                      ...+.+.|++++|+|++|++|.++++.+ ...|++|++++++.++.+.+.+         .|.     ..+  .+..+  
T Consensus        73 ~~~~~~~gKvVLVTGATGgIG~aLAr~L-Lk~G~~Vval~Rn~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLtD--  149 (576)
T PLN03209         73 KELDTKDEDLAFVAGATGKVGSRTVREL-LKLGFRVRAGVRSAQRAESLVQSVKQMKLDVEGTQPVEKLEIVECDLEK--  149 (576)
T ss_pred             cccccCCCCEEEEECCCCHHHHHHHHHH-HHCCCeEEEEeCCHHHHHHHHHHhhhhccccccccccCceEEEEecCCC--
Confidence            4556778999999999999999988887 4579999999998887754432         121     111  22222  


Q ss_pred             hHHHHHHHHhCCCcccEEEECCCC
Q psy1959         219 SLVNKVLEVSGGKYANVVFEAVGG  242 (296)
Q Consensus       219 ~~~~~i~~~~~~~g~d~vld~~g~  242 (296)
                        .+.+.+..  .++|++|++.|.
T Consensus       150 --~esI~~aL--ggiDiVVn~AG~  169 (576)
T PLN03209        150 --PDQIGPAL--GNASVVICCIGA  169 (576)
T ss_pred             --HHHHHHHh--cCCCEEEEcccc
Confidence              22344443  369999999985

>PRK08265 short chain dehydrogenase; Provisional

Probab=96.68  E-value=0.0099  Score=52.22  Aligned_cols=81  Identities=16%  Similarity=0.114  Sum_probs=54.0

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHH-hcCCcE-E--EEcCCchhHHHHHHHHhC-CCcccE
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIR-QKGAWA-A--LTFTNEKSLVNKVLEVSG-GKYANV  235 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~-~~g~~~-~--~~~~~~~~~~~~i~~~~~-~~g~d~  235 (296)
                      ++++++|+|+++++|.++++.+ ...|++|++++++.++.+.+. +.+... .  .+..+..+..+.+.+... -..+|+
T Consensus         5 ~~k~vlItGas~gIG~~ia~~l-~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~id~   83 (261)
T PRK08265          5 AGKVAIVTGGATLIGAAVARAL-VAAGARVAIVDIDADNGAAVAASLGERARFIATDITDDAAIERAVATVVARFGRVDI   83 (261)
T ss_pred             CCCEEEEECCCChHHHHHHHHH-HHCCCEEEEEeCCHHHHHHHHHHhCCeeEEEEecCCCHHHHHHHHHHHHHHhCCCCE
Confidence            4689999999999999988887 447999999999887665554 344321 1  233332333333333321 136899


Q ss_pred             EEECCCC
Q psy1959         236 VFEAVGG  242 (296)
Q Consensus       236 vld~~g~  242 (296)
                      ++.+.|.
T Consensus        84 lv~~ag~   90 (261)
T PRK08265         84 LVNLACT   90 (261)
T ss_pred             EEECCCC
Confidence            9999874

>PRK07062 short chain dehydrogenase; Provisional

Probab=96.68  E-value=0.014  Score=51.29  Aligned_cols=81  Identities=21%  Similarity=0.230  Sum_probs=53.6

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHh----c--CCcE---EEEcCCchhHHHHHHHHhC-C
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQ----K--GAWA---ALTFTNEKSLVNKVLEVSG-G  230 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~----~--g~~~---~~~~~~~~~~~~~i~~~~~-~  230 (296)
                      .+++++|+|+++++|.+.++.+ ...|++|+.+++++++.+.+.+    .  +...   ..+..+..+..+.+.+... -
T Consensus         7 ~~k~~lItGas~giG~~ia~~l-~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~   85 (265)
T PRK07062          7 EGRVAVVTGGSSGIGLATVELL-LEAGASVAICGRDEERLASAEARLREKFPGARLLAARCDVLDEADVAAFAAAVEARF   85 (265)
T ss_pred             CCCEEEEeCCCchHHHHHHHHH-HHCCCeEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEecCCCHHHHHHHHHHHHHhc
Confidence            5789999999999999988888 4579999999998877654432    1  1111   1234442333333333321 1


Q ss_pred             CcccEEEECCCC
Q psy1959         231 KYANVVFEAVGG  242 (296)
Q Consensus       231 ~g~d~vld~~g~  242 (296)
                      ..+|+++++.|.
T Consensus        86 g~id~li~~Ag~   97 (265)
T PRK07062         86 GGVDMLVNNAGQ   97 (265)
T ss_pred             CCCCEEEECCCC
Confidence            368999999984

>PRK00045 hemA glutamyl-tRNA reductase; Reviewed

Probab=96.67  E-value=0.0038  Score=59.16  Aligned_cols=143  Identities=19%  Similarity=0.202  Sum_probs=87.0

Q ss_pred             cCCCceeEEEEEEccCCCCCCCCCCCCCCCCCCCEEE-Eec---------C-----CCCCcccceEeeeCCceEECCCCC
Q psy1959          70 VPGFEFSGTVIEVADTKSSSTEEDDEEDVLQVGDKVL-ALN---------K-----ELLHGFSDQCVVHTNDVFKIPEKM  134 (296)
Q Consensus        70 ~~G~e~~G~V~~v~~~~~~~~~~g~~v~~~~~Gd~V~-~~~---------~-----~~~g~~~~~~~v~~~~~~~iP~~~  134 (296)
                      .-|+|+++.+.+|          +.+.+..-+|..-+ +-.         .     ..++.|++.        +++|+.+
T Consensus        91 ~~g~ea~~hl~~V----------~~GldS~V~GE~qIlgQvk~a~~~a~~~g~~g~~l~~lf~~a--------~~~~k~v  152 (423)
T PRK00045         91 HEGEEAVRHLFRV----------ASGLDSMVLGEPQILGQVKDAYALAQEAGTVGTILNRLFQKA--------FSVAKRV  152 (423)
T ss_pred             cCCHHHHHHHHHH----------HhhhhhhhcCChHHHHHHHHHHHHHHHcCCchHHHHHHHHHH--------HHHHhhH
Confidence            4699999999999          55555455555322 100         0     011233333        3344444


Q ss_pred             CHHHHhhhccHHHHHHHHHHHHcC---CCCCcEEEEEcCCCcHHHHHHHHHHHhCCC-EEEEEeCCcchHH-HHHhcCCc
Q psy1959         135 TFEHAASLADSYSTAQIVFSRHAK---LKEKQTVLVTAAGGGLGLAAVDMATKIYKA-KVIGVCNSEDKTD-LIRQKGAW  209 (296)
Q Consensus       135 ~~~~aa~l~~~~~ta~~~l~~~~~---~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~-~Vi~~~~~~~~~~-~~~~~g~~  209 (296)
                      ..+.. ....+.++++.++.....   -.++++|+|+|+ |.+|.++++.+ ...|+ +|++++++.++.. +++++|..
T Consensus       153 ~~~t~-i~~~~~Sv~~~Av~~a~~~~~~~~~~~vlViGa-G~iG~~~a~~L-~~~G~~~V~v~~r~~~ra~~la~~~g~~  229 (423)
T PRK00045        153 RTETG-IGAGAVSVASAAVELAKQIFGDLSGKKVLVIGA-GEMGELVAKHL-AEKGVRKITVANRTLERAEELAEEFGGE  229 (423)
T ss_pred             hhhcC-CCCCCcCHHHHHHHHHHHhhCCccCCEEEEECc-hHHHHHHHHHH-HHCCCCeEEEEeCCHHHHHHHHHHcCCc
Confidence            33322 223356666666633222   257899999997 99999999999 55787 8999999888765 55666653


Q ss_pred             EEEEcCCchhHHHHHHHHhCCCcccEEEECCCCc
Q psy1959         210 AALTFTNEKSLVNKVLEVSGGKYANVVFEAVGGE  243 (296)
Q Consensus       210 ~~~~~~~~~~~~~~i~~~~~~~g~d~vld~~g~~  243 (296)
                       ....   .+.    .+..  .++|++|+|++..
T Consensus       230 -~~~~---~~~----~~~l--~~aDvVI~aT~s~  253 (423)
T PRK00045        230 -AIPL---DEL----PEAL--AEADIVISSTGAP  253 (423)
T ss_pred             -EeeH---HHH----HHHh--ccCCEEEECCCCC
Confidence             2222   122    2222  2689999999973

>PRK12829 short chain dehydrogenase; Provisional

Probab=96.65  E-value=0.0093  Score=52.11  Aligned_cols=83  Identities=16%  Similarity=0.027  Sum_probs=54.4

Q ss_pred             CCCCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCC-c--E--EEEcCCchhHHHHHHHHhC-CCc
Q psy1959         159 LKEKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGA-W--A--ALTFTNEKSLVNKVLEVSG-GKY  232 (296)
Q Consensus       159 ~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~-~--~--~~~~~~~~~~~~~i~~~~~-~~g  232 (296)
                      .-++.+++|+|++|++|..+++.+ ...|++|+++++++++.+.+.+... .  .  ..+..+.....+.+.+... -.+
T Consensus         8 ~~~~~~vlItGa~g~iG~~~a~~L-~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   86 (264)
T PRK12829          8 PLDGLRVLVTGGASGIGRAIAEAF-AEAGARVHVCDVSEAALAATAARLPGAKVTATVADVADPAQVERVFDTAVERFGG   86 (264)
T ss_pred             ccCCCEEEEeCCCCcHHHHHHHHH-HHCCCEEEEEeCCHHHHHHHHHHHhcCceEEEEccCCCHHHHHHHHHHHHHHhCC
Confidence            347789999999999999988888 4579999999998776665543221 1  1  1233332333222322211 136


Q ss_pred             ccEEEECCCC
Q psy1959         233 ANVVFEAVGG  242 (296)
Q Consensus       233 ~d~vld~~g~  242 (296)
                      +|+++.+.|.
T Consensus        87 ~d~vi~~ag~   96 (264)
T PRK12829         87 LDVLVNNAGI   96 (264)
T ss_pred             CCEEEECCCC
Confidence            9999998885

>PRK05866 short chain dehydrogenase; Provisional

Probab=96.64  E-value=0.012  Score=52.77  Aligned_cols=81  Identities=23%  Similarity=0.291  Sum_probs=53.3

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHh----cCCcE-E--EEcCCchhHHHHHHHHhC-CCc
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQ----KGAWA-A--LTFTNEKSLVNKVLEVSG-GKY  232 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~----~g~~~-~--~~~~~~~~~~~~i~~~~~-~~g  232 (296)
                      .+++++|+|++|++|.+.++.+ ...|++|++++++.++.+.+.+    .+... .  .+..+..+..+.+..... -..
T Consensus        39 ~~k~vlItGasggIG~~la~~L-a~~G~~Vi~~~R~~~~l~~~~~~l~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~~g~  117 (293)
T PRK05866         39 TGKRILLTGASSGIGEAAAEQF-ARRGATVVAVARREDLLDAVADRITRAGGDAMAVPCDLSDLDAVDALVADVEKRIGG  117 (293)
T ss_pred             CCCEEEEeCCCcHHHHHHHHHH-HHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence            4689999999999999988877 4479999999998877655432    23322 1  233332333333332211 236


Q ss_pred             ccEEEECCCC
Q psy1959         233 ANVVFEAVGG  242 (296)
Q Consensus       233 ~d~vld~~g~  242 (296)
                      +|+++++.|.
T Consensus       118 id~li~~AG~  127 (293)
T PRK05866        118 VDILINNAGR  127 (293)
T ss_pred             CCEEEECCCC
Confidence            8999999884

>PRK05867 short chain dehydrogenase; Provisional

Probab=96.63  E-value=0.012  Score=51.20  Aligned_cols=81  Identities=14%  Similarity=0.106  Sum_probs=53.6

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHh----cCCcE-E--EEcCCchhHHHHHHHHhC-CCc
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQ----KGAWA-A--LTFTNEKSLVNKVLEVSG-GKY  232 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~----~g~~~-~--~~~~~~~~~~~~i~~~~~-~~g  232 (296)
                      .+++++|+|+++++|.++++.+ ...|++|++++++.++.+.+.+    .+... .  .+..+..+..+.+.+... -..
T Consensus         8 ~~k~vlVtGas~gIG~~ia~~l-~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~   86 (253)
T PRK05867          8 HGKRALITGASTGIGKRVALAY-VEAGAQVAIAARHLDALEKLADEIGTSGGKVVPVCCDVSQHQQVTSMLDQVTAELGG   86 (253)
T ss_pred             CCCEEEEECCCchHHHHHHHHH-HHCCCEEEEEcCCHHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHHHhCC
Confidence            5789999999999999988887 4579999999998777655432    23222 1  233332333333333221 126


Q ss_pred             ccEEEECCCC
Q psy1959         233 ANVVFEAVGG  242 (296)
Q Consensus       233 ~d~vld~~g~  242 (296)
                      +|+++.+.|.
T Consensus        87 id~lv~~ag~   96 (253)
T PRK05867         87 IDIAVCNAGI   96 (253)
T ss_pred             CCEEEECCCC
Confidence            8999999874

>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase

Probab=96.63  E-value=0.013  Score=50.66  Aligned_cols=81  Identities=19%  Similarity=0.175  Sum_probs=51.9

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcc--hHHHHHhcCCcE-E--EEcCCchhHHHHHHHHhC-CCccc
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSED--KTDLIRQKGAWA-A--LTFTNEKSLVNKVLEVSG-GKYAN  234 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~--~~~~~~~~g~~~-~--~~~~~~~~~~~~i~~~~~-~~g~d  234 (296)
                      .+++++|+|++|++|.++++.+ ...|++|+.+++++.  ..+.+++.+... .  .+..+..+....+.+... ...+|
T Consensus         4 ~~k~vlItGas~gIG~~ia~~l-~~~G~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~d   82 (248)
T TIGR01832         4 EGKVALVTGANTGLGQGIAVGL-AEAGADIVGAGRSEPSETQQQVEALGRRFLSLTADLSDIEAIKALVDSAVEEFGHID   82 (248)
T ss_pred             CCCEEEEECCCchHHHHHHHHH-HHCCCEEEEEcCchHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHHcCCCC
Confidence            5789999999999999988777 447999999987652  123334444322 1  233332444444443321 23689


Q ss_pred             EEEECCCC
Q psy1959         235 VVFEAVGG  242 (296)
Q Consensus       235 ~vld~~g~  242 (296)
                      +++.+.|.
T Consensus        83 ~li~~ag~   90 (248)
T TIGR01832        83 ILVNNAGI   90 (248)
T ss_pred             EEEECCCC
Confidence            99999874

This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.

>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B

Probab=96.63  E-value=0.017  Score=47.55  Aligned_cols=70  Identities=21%  Similarity=0.119  Sum_probs=51.4

Q ss_pred             EEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCcEEEEcCCchhHHHHHHHHhCCCcccEEEECCCC
Q psy1959         165 VLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNKVLEVSGGKYANVVFEAVGG  242 (296)
Q Consensus       165 vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~g~d~vld~~g~  242 (296)
                      |+|+|++|.+|..+++.+ ...|.+|+++.|++++.+.  ..++. ++..+- .+. +.+.+...  ++|.++.+.|.
T Consensus         1 I~V~GatG~vG~~l~~~L-~~~~~~V~~~~R~~~~~~~--~~~~~-~~~~d~-~d~-~~~~~al~--~~d~vi~~~~~   70 (183)
T PF13460_consen    1 ILVFGATGFVGRALAKQL-LRRGHEVTALVRSPSKAED--SPGVE-IIQGDL-FDP-DSVKAALK--GADAVIHAAGP   70 (183)
T ss_dssp             EEEETTTSHHHHHHHHHH-HHTTSEEEEEESSGGGHHH--CTTEE-EEESCT-TCH-HHHHHHHT--TSSEEEECCHS
T ss_pred             eEEECCCChHHHHHHHHH-HHCCCEEEEEecCchhccc--ccccc-cceeee-hhh-hhhhhhhh--hcchhhhhhhh
Confidence            789999999999999999 5578999999999998877  33433 232221 222 34455443  79999999984

...

>PRK06483 dihydromonapterin reductase; Provisional

Probab=96.62  E-value=0.017  Score=49.66  Aligned_cols=80  Identities=20%  Similarity=0.206  Sum_probs=52.1

Q ss_pred             CcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcch-HHHHHhcCCcEE-EEcCCchhHHHHHHHHhCC-CcccEEEE
Q psy1959         162 KQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDK-TDLIRQKGAWAA-LTFTNEKSLVNKVLEVSGG-KYANVVFE  238 (296)
Q Consensus       162 g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~-~~~~~~~g~~~~-~~~~~~~~~~~~i~~~~~~-~g~d~vld  238 (296)
                      +++++|+|+++++|.++++.+ ...|++|+++++++++ .+.+++.+...+ .+..+..+..+.+.+.... .++|++++
T Consensus         2 ~k~vlItGas~gIG~~ia~~l-~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~lv~   80 (236)
T PRK06483          2 PAPILITGAGQRIGLALAWHL-LAQGQPVIVSYRTHYPAIDGLRQAGAQCIQADFSTNAGIMAFIDELKQHTDGLRAIIH   80 (236)
T ss_pred             CceEEEECCCChHHHHHHHHH-HHCCCeEEEEeCCchhHHHHHHHcCCEEEEcCCCCHHHHHHHHHHHHhhCCCccEEEE
Confidence            468999999999999988877 4579999999987654 334444553221 2333323444444443221 25899999


Q ss_pred             CCCC
Q psy1959         239 AVGG  242 (296)
Q Consensus       239 ~~g~  242 (296)
                      +.|.
T Consensus        81 ~ag~   84 (236)
T PRK06483         81 NASD   84 (236)
T ss_pred             CCcc
Confidence            9874

>PRK07523 gluconate 5-dehydrogenase; Provisional

Probab=96.61  E-value=0.013  Score=51.10  Aligned_cols=81  Identities=17%  Similarity=0.157  Sum_probs=53.4

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHH----HhcCCcEE---EEcCCchhHHHHHHHHh-CCCc
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLI----RQKGAWAA---LTFTNEKSLVNKVLEVS-GGKY  232 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~----~~~g~~~~---~~~~~~~~~~~~i~~~~-~~~g  232 (296)
                      ++++++|+|++|++|.++++.+ ...|++|+++++++++.+.+    ++.|....   .+..+..+..+.+.+.. ....
T Consensus         9 ~~k~vlItGa~g~iG~~ia~~l-~~~G~~V~~~~r~~~~~~~~~~~i~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   87 (255)
T PRK07523          9 TGRRALVTGSSQGIGYALAEGL-AQAGAEVILNGRDPAKLAAAAESLKGQGLSAHALAFDVTDHDAVRAAIDAFEAEIGP   87 (255)
T ss_pred             CCCEEEEECCcchHHHHHHHHH-HHcCCEEEEEeCCHHHHHHHHHHHHhcCceEEEEEccCCCHHHHHHHHHHHHHhcCC
Confidence            5789999999999999988877 44799999999887765433    22232221   23333233333333332 1236


Q ss_pred             ccEEEECCCC
Q psy1959         233 ANVVFEAVGG  242 (296)
Q Consensus       233 ~d~vld~~g~  242 (296)
                      +|+++.+.|.
T Consensus        88 ~d~li~~ag~   97 (255)
T PRK07523         88 IDILVNNAGM   97 (255)
T ss_pred             CCEEEECCCC
Confidence            8999999984

>PRK09291 short chain dehydrogenase; Provisional

Probab=96.60  E-value=0.015  Score=50.66  Aligned_cols=75  Identities=20%  Similarity=0.243  Sum_probs=50.7

Q ss_pred             CcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHh----cCCcE-E--EEcCCchhHHHHHHHHhCCCccc
Q psy1959         162 KQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQ----KGAWA-A--LTFTNEKSLVNKVLEVSGGKYAN  234 (296)
Q Consensus       162 g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~----~g~~~-~--~~~~~~~~~~~~i~~~~~~~g~d  234 (296)
                      +++++|+|++|++|..+++.+ ...|++|+++++++++.+.+.+    .+... .  .+..+    .+.+..... .++|
T Consensus         2 ~~~vlVtGasg~iG~~ia~~l-~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~----~~~~~~~~~-~~id   75 (257)
T PRK09291          2 SKTILITGAGSGFGREVALRL-ARKGHNVIAGVQIAPQVTALRAEAARRGLALRVEKLDLTD----AIDRAQAAE-WDVD   75 (257)
T ss_pred             CCEEEEeCCCCHHHHHHHHHH-HHCCCEEEEEeCCHHHHHHHHHHHHhcCCcceEEEeeCCC----HHHHHHHhc-CCCC
Confidence            458999999999999998888 4579999999988776555433    23221 1  23333    123333332 3799


Q ss_pred             EEEECCCC
Q psy1959         235 VVFEAVGG  242 (296)
Q Consensus       235 ~vld~~g~  242 (296)
                      ++|.+.|.
T Consensus        76 ~vi~~ag~   83 (257)
T PRK09291         76 VLLNNAGI   83 (257)
T ss_pred             EEEECCCc
Confidence            99999873

>PRK07577 short chain dehydrogenase; Provisional

Probab=96.60  E-value=0.014  Score=49.98  Aligned_cols=76  Identities=24%  Similarity=0.229  Sum_probs=51.5

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCc-EEEEcCCchhHHHHHHHHhCCCcccEEEEC
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAW-AALTFTNEKSLVNKVLEVSGGKYANVVFEA  239 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~i~~~~~~~g~d~vld~  239 (296)
                      .+++++|.|++|++|...++.+ ...|.+|+.++++.++ .    .... ...+..+..+..+.+.+.....++|+++.+
T Consensus         2 ~~k~vlItG~s~~iG~~ia~~l-~~~G~~v~~~~r~~~~-~----~~~~~~~~D~~~~~~~~~~~~~~~~~~~~d~vi~~   75 (234)
T PRK07577          2 SSRTVLVTGATKGIGLALSLRL-ANLGHQVIGIARSAID-D----FPGELFACDLADIEQTAATLAQINEIHPVDAIVNN   75 (234)
T ss_pred             CCCEEEEECCCCcHHHHHHHHH-HHCCCEEEEEeCCccc-c----cCceEEEeeCCCHHHHHHHHHHHHHhCCCcEEEEC
Confidence            3578999999999999988887 4579999999987654 1    1111 223444434444445544433468999999


Q ss_pred             CCC
Q psy1959         240 VGG  242 (296)
Q Consensus       240 ~g~  242 (296)
                      .|.
T Consensus        76 ag~   78 (234)
T PRK07577         76 VGI   78 (234)
T ss_pred             CCC
Confidence            884

>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed

Probab=96.59  E-value=0.017  Score=51.20  Aligned_cols=97  Identities=20%  Similarity=0.134  Sum_probs=65.1

Q ss_pred             HcCCCCCcEEEEEcCCCcHHHHHHHHHHHhCCC--EEEEEeCCcchHHHHHhc----CCcEEEEcCCchhHHHHHHHHh-
Q psy1959         156 HAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKA--KVIGVCNSEDKTDLIRQK----GAWAALTFTNEKSLVNKVLEVS-  228 (296)
Q Consensus       156 ~~~~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~--~Vi~~~~~~~~~~~~~~~----g~~~~~~~~~~~~~~~~i~~~~-  228 (296)
                      .+.+++|++||.+|+ |+ |..+.+++ +..+.  +|++++.+++.++.+++.    +...+....  .++    .+.. 
T Consensus        72 ~~~~~~g~~VLDiG~-G~-G~~~~~~a-~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~--~d~----~~l~~  142 (272)
T PRK11873         72 LAELKPGETVLDLGS-GG-GFDCFLAA-RRVGPTGKVIGVDMTPEMLAKARANARKAGYTNVEFRL--GEI----EALPV  142 (272)
T ss_pred             hccCCCCCEEEEeCC-CC-CHHHHHHH-HHhCCCCEEEEECCCHHHHHHHHHHHHHcCCCCEEEEE--cch----hhCCC
Confidence            467889999999997 66 88777777 44443  799999999988888763    332221111  111    1111 


Q ss_pred             CCCcccEEEECCC-----C--ccHHHHHHHhhccCceEEee
Q psy1959         229 GGKYANVVFEAVG-----G--EDKTDLIRQKGAWAALTFTN  262 (296)
Q Consensus       229 ~~~g~d~vld~~g-----~--~~~~~~~~~lg~~~g~~~~~  262 (296)
                      ....+|+|+...-     +  ..+..+.+.| +++|.+.+.
T Consensus       143 ~~~~fD~Vi~~~v~~~~~d~~~~l~~~~r~L-kpGG~l~i~  182 (272)
T PRK11873        143 ADNSVDVIISNCVINLSPDKERVFKEAFRVL-KPGGRFAIS  182 (272)
T ss_pred             CCCceeEEEEcCcccCCCCHHHHHHHHHHHc-CCCcEEEEE
Confidence            2347999986531     2  4688999999 999988653

>PRK07814 short chain dehydrogenase; Provisional

Probab=96.59  E-value=0.01  Score=52.07  Aligned_cols=81  Identities=23%  Similarity=0.266  Sum_probs=53.5

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHh----cCCcE-E--EEcCCchhHHHHHHHHhC-CCc
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQ----KGAWA-A--LTFTNEKSLVNKVLEVSG-GKY  232 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~----~g~~~-~--~~~~~~~~~~~~i~~~~~-~~g  232 (296)
                      ++++++|+|++|++|.+.++.+ ...|++|+++++++++.+.+.+    .+... .  .+..+.....+.+.+... -..
T Consensus         9 ~~~~vlItGasggIG~~~a~~l-~~~G~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   87 (263)
T PRK07814          9 DDQVAVVTGAGRGLGAAIALAF-AEAGADVLIAARTESQLDEVAEQIRAAGRRAHVVAADLAHPEATAGLAGQAVEAFGR   87 (263)
T ss_pred             CCCEEEEECCCChHHHHHHHHH-HHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence            5789999999999999999888 4579999999998776654432    23221 1  333342333333333321 136


Q ss_pred             ccEEEECCCC
Q psy1959         233 ANVVFEAVGG  242 (296)
Q Consensus       233 ~d~vld~~g~  242 (296)
                      +|+++++.|.
T Consensus        88 id~vi~~Ag~   97 (263)
T PRK07814         88 LDIVVNNVGG   97 (263)
T ss_pred             CCEEEECCCC
Confidence            8999999873

>PRK07326 short chain dehydrogenase; Provisional

Probab=96.58  E-value=0.015  Score=49.91  Aligned_cols=81  Identities=14%  Similarity=0.124  Sum_probs=53.1

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHH-hcCC---cEE--EEcCCchhHHHHHHHHhC-CCcc
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIR-QKGA---WAA--LTFTNEKSLVNKVLEVSG-GKYA  233 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~-~~g~---~~~--~~~~~~~~~~~~i~~~~~-~~g~  233 (296)
                      .+.+++|+|++|++|..+++.+ ...|++|+++++++++...+. ++..   ...  .+..+..++.+.+.++.. ..++
T Consensus         5 ~~~~ilItGatg~iG~~la~~l-~~~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~   83 (237)
T PRK07326          5 KGKVALITGGSKGIGFAIAEAL-LAEGYKVAITARDQKELEEAAAELNNKGNVLGLAADVRDEADVQRAVDAIVAAFGGL   83 (237)
T ss_pred             CCCEEEEECCCCcHHHHHHHHH-HHCCCEEEEeeCCHHHHHHHHHHHhccCcEEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence            4689999999999999988888 446999999999877665443 2221   111  233332344444443321 1368


Q ss_pred             cEEEECCCC
Q psy1959         234 NVVFEAVGG  242 (296)
Q Consensus       234 d~vld~~g~  242 (296)
                      |++|++.|.
T Consensus        84 d~vi~~ag~   92 (237)
T PRK07326         84 DVLIANAGV   92 (237)
T ss_pred             CEEEECCCC
Confidence            999998874

>PRK08862 short chain dehydrogenase; Provisional

Probab=96.57  E-value=0.011  Score=51.04  Aligned_cols=80  Identities=14%  Similarity=0.051  Sum_probs=52.7

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHH----hcCCcEE---EEcCCchhHHHHHHHHhC--CC
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIR----QKGAWAA---LTFTNEKSLVNKVLEVSG--GK  231 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~----~~g~~~~---~~~~~~~~~~~~i~~~~~--~~  231 (296)
                      ++++++|.|+++++|.+.+.-+ ...|++|+++.+++++.+.+.    +.+....   .+..+.++..+.+.+...  +.
T Consensus         4 ~~k~~lVtGas~GIG~aia~~l-a~~G~~V~~~~r~~~~l~~~~~~i~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~   82 (227)
T PRK08862          4 KSSIILITSAGSVLGRTISCHF-ARLGATLILCDQDQSALKDTYEQCSALTDNVYSFQLKDFSQESIRHLFDAIEQQFNR   82 (227)
T ss_pred             CCeEEEEECCccHHHHHHHHHH-HHCCCEEEEEcCCHHHHHHHHHHHHhcCCCeEEEEccCCCHHHHHHHHHHHHHHhCC
Confidence            4789999999999999977666 347999999999888765443    3343321   223332334333443322  22


Q ss_pred             cccEEEECCC
Q psy1959         232 YANVVFEAVG  241 (296)
Q Consensus       232 g~d~vld~~g  241 (296)
                      .+|+++++.|
T Consensus        83 ~iD~li~nag   92 (227)
T PRK08862         83 APDVLVNNWT   92 (227)
T ss_pred             CCCEEEECCc
Confidence            6999999987

>PRK07478 short chain dehydrogenase; Provisional

Probab=96.57  E-value=0.012  Score=51.30  Aligned_cols=81  Identities=20%  Similarity=0.178  Sum_probs=53.3

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHH----hcCCcEE---EEcCCchhHHHHHHHHhC-CCc
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIR----QKGAWAA---LTFTNEKSLVNKVLEVSG-GKY  232 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~----~~g~~~~---~~~~~~~~~~~~i~~~~~-~~g  232 (296)
                      ++++++|+|+++++|.+.++.+ ...|++|+.+++++++.+.+.    +.+....   .+..+..+..+.+.+... -..
T Consensus         5 ~~k~~lItGas~giG~~ia~~l-~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   83 (254)
T PRK07478          5 NGKVAIITGASSGIGRAAAKLF-AREGAKVVVGARRQAELDQLVAEIRAEGGEAVALAGDVRDEAYAKALVALAVERFGG   83 (254)
T ss_pred             CCCEEEEeCCCChHHHHHHHHH-HHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHhcCC
Confidence            4679999999999999988777 447999999999887765543    2233222   233332333333333321 136


Q ss_pred             ccEEEECCCC
Q psy1959         233 ANVVFEAVGG  242 (296)
Q Consensus       233 ~d~vld~~g~  242 (296)
                      +|+++.+.|.
T Consensus        84 id~li~~ag~   93 (254)
T PRK07478         84 LDIAFNNAGT   93 (254)
T ss_pred             CCEEEECCCC
Confidence            9999999884

>PRK05854 short chain dehydrogenase; Provisional

Probab=96.55  E-value=0.016  Score=52.47  Aligned_cols=81  Identities=21%  Similarity=0.206  Sum_probs=52.3

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHH----hc--CCcE---EEEcCCchhHHHHHHHHh-CC
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIR----QK--GAWA---ALTFTNEKSLVNKVLEVS-GG  230 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~----~~--g~~~---~~~~~~~~~~~~~i~~~~-~~  230 (296)
                      .+++++|+|+++++|.++++.+ ...|++|+++++++++.+.+.    +.  +...   ..+..+..+..+.+.+.. ..
T Consensus        13 ~gk~~lITGas~GIG~~~a~~L-a~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dl~d~~sv~~~~~~~~~~~   91 (313)
T PRK05854         13 SGKRAVVTGASDGLGLGLARRL-AAAGAEVILPVRNRAKGEAAVAAIRTAVPDAKLSLRALDLSSLASVAALGEQLRAEG   91 (313)
T ss_pred             CCCEEEEeCCCChHHHHHHHHH-HHCCCEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEecCCCHHHHHHHHHHHHHhC
Confidence            4789999999999999988777 347999999999887655432    21  1111   133334233333333322 12


Q ss_pred             CcccEEEECCCC
Q psy1959         231 KYANVVFEAVGG  242 (296)
Q Consensus       231 ~g~d~vld~~g~  242 (296)
                      ..+|+++++.|.
T Consensus        92 ~~iD~li~nAG~  103 (313)
T PRK05854         92 RPIHLLINNAGV  103 (313)
T ss_pred             CCccEEEECCcc
Confidence            368999998874

>KOG1205|consensus

Probab=96.54  E-value=0.015  Score=51.81  Aligned_cols=80  Identities=26%  Similarity=0.319  Sum_probs=53.3

Q ss_pred             CCcEEEEEcCCCcHHHH-HHHHHHHhCCCEEEEEeCCcchHHHH----HhcCCcE-E----EEcCCchhHHHHHHHHh-C
Q psy1959         161 EKQTVLVTAAGGGLGLA-AVDMATKIYKAKVIGVCNSEDKTDLI----RQKGAWA-A----LTFTNEKSLVNKVLEVS-G  229 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~a-a~~la~~~~g~~Vi~~~~~~~~~~~~----~~~g~~~-~----~~~~~~~~~~~~i~~~~-~  229 (296)
                      .++.|+|+|||+|+|.+ |.+++ + .|++++.+.+..++++.+    ++.+... +    .+..+.++..+.+.+.. .
T Consensus        11 ~~kvVvITGASsGIG~~lA~~la-~-~G~~l~lvar~~rrl~~v~~~l~~~~~~~~v~~~~~Dvs~~~~~~~~~~~~~~~   88 (282)
T KOG1205|consen   11 AGKVVLITGASSGIGEALAYELA-K-RGAKLVLVARRARRLERVAEELRKLGSLEKVLVLQLDVSDEESVKKFVEWAIRH   88 (282)
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHH-h-CCCceEEeehhhhhHHHHHHHHHHhCCcCccEEEeCccCCHHHHHHHHHHHHHh
Confidence            57899999999999977 55666 4 699989899888887766    3334333 2    22333234444443322 2


Q ss_pred             CCcccEEEECCCC
Q psy1959         230 GKYANVVFEAVGG  242 (296)
Q Consensus       230 ~~g~d~vld~~g~  242 (296)
                      -.++|+.+++.|-
T Consensus        89 fg~vDvLVNNAG~  101 (282)
T KOG1205|consen   89 FGRVDVLVNNAGI  101 (282)
T ss_pred             cCCCCEEEecCcc
Confidence            3479999999883

>KOG1014|consensus

Probab=96.53  E-value=0.015  Score=51.91  Aligned_cols=81  Identities=26%  Similarity=0.332  Sum_probs=59.5

Q ss_pred             CCCcEEEEEcCCCcHHHH-HHHHHHHhCCCEEEEEeCCcchHHHHHh-----cCCc---EEEEcCCchhHHHHHHHHhCC
Q psy1959         160 KEKQTVLVTAAGGGLGLA-AVDMATKIYKAKVIGVCNSEDKTDLIRQ-----KGAW---AALTFTNEKSLVNKVLEVSGG  230 (296)
Q Consensus       160 ~~g~~vlI~Ga~g~vG~a-a~~la~~~~g~~Vi~~~~~~~~~~~~~~-----~g~~---~~~~~~~~~~~~~~i~~~~~~  230 (296)
                      +-|+|.+|.|++.++|.+ +-++| + .|.+|+.+.|+++|++..++     .++.   ..+|+.+....-+.+++...+
T Consensus        47 ~~g~WAVVTGaTDGIGKayA~eLA-k-rG~nvvLIsRt~~KL~~v~kEI~~~~~vev~~i~~Dft~~~~~ye~i~~~l~~  124 (312)
T KOG1014|consen   47 KLGSWAVVTGATDGIGKAYARELA-K-RGFNVVLISRTQEKLEAVAKEIEEKYKVEVRIIAIDFTKGDEVYEKLLEKLAG  124 (312)
T ss_pred             hcCCEEEEECCCCcchHHHHHHHH-H-cCCEEEEEeCCHHHHHHHHHHHHHHhCcEEEEEEEecCCCchhHHHHHHHhcC
Confidence            357999999999999976 77788 5 79999999999999876643     2321   235665422234556666656


Q ss_pred             CcccEEEECCCC
Q psy1959         231 KYANVVFEAVGG  242 (296)
Q Consensus       231 ~g~d~vld~~g~  242 (296)
                      -.+-+.++++|-
T Consensus       125 ~~VgILVNNvG~  136 (312)
T KOG1014|consen  125 LDVGILVNNVGM  136 (312)
T ss_pred             CceEEEEecccc
Confidence            677899999996

>PRK07774 short chain dehydrogenase; Provisional

Probab=96.50  E-value=0.014  Score=50.53  Aligned_cols=81  Identities=15%  Similarity=0.140  Sum_probs=51.4

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHh----cCCcE---EEEcCCchhHHHHHHHHh-CCCc
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQ----KGAWA---ALTFTNEKSLVNKVLEVS-GGKY  232 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~----~g~~~---~~~~~~~~~~~~~i~~~~-~~~g  232 (296)
                      .+.+++|+|++|++|..+++.+ ...|++|+.+++++++.+.+.+    .+...   ..+..+..+..+.+.+.. ...+
T Consensus         5 ~~k~vlItGasg~iG~~la~~l-~~~g~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~   83 (250)
T PRK07774          5 DDKVAIVTGAAGGIGQAYAEAL-AREGASVVVADINAEGAERVAKQIVADGGTAIAVQVDVSDPDSAKAMADATVSAFGG   83 (250)
T ss_pred             CCCEEEEECCCchHHHHHHHHH-HHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHhCC
Confidence            5678999999999999988877 4579999999998766544322    22222   123333222222222221 1126


Q ss_pred             ccEEEECCCC
Q psy1959         233 ANVVFEAVGG  242 (296)
Q Consensus       233 ~d~vld~~g~  242 (296)
                      +|++|.+.|.
T Consensus        84 id~vi~~ag~   93 (250)
T PRK07774         84 IDYLVNNAAI   93 (250)
T ss_pred             CCEEEECCCC
Confidence            8999999884

>PRK06500 short chain dehydrogenase; Provisional

Probab=96.50  E-value=0.017  Score=49.96  Aligned_cols=81  Identities=17%  Similarity=0.124  Sum_probs=53.1

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHH-hcCCcEE---EEcCCchhHHHHHHHHhC-CCcccE
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIR-QKGAWAA---LTFTNEKSLVNKVLEVSG-GKYANV  235 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~-~~g~~~~---~~~~~~~~~~~~i~~~~~-~~g~d~  235 (296)
                      ++++++|+|++|++|.+.++.+ ...|++|+++++++++.+.+. +++....   .+..+..+....+..... ...+|+
T Consensus         5 ~~k~vlItGasg~iG~~la~~l-~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~   83 (249)
T PRK06500          5 QGKTALITGGTSGIGLETARQF-LAEGARVAITGRDPASLEAARAELGESALVIRADAGDVAAQKALAQALAEAFGRLDA   83 (249)
T ss_pred             CCCEEEEeCCCchHHHHHHHHH-HHCCCEEEEecCCHHHHHHHHHHhCCceEEEEecCCCHHHHHHHHHHHHHHhCCCCE
Confidence            4679999999999999988887 457999999998877665543 3443322   223332222222222211 136899


Q ss_pred             EEECCCC
Q psy1959         236 VFEAVGG  242 (296)
Q Consensus       236 vld~~g~  242 (296)
                      ++.+.|.
T Consensus        84 vi~~ag~   90 (249)
T PRK06500         84 VFINAGV   90 (249)
T ss_pred             EEECCCC
Confidence            9999874

>PRK05717 oxidoreductase; Validated

Probab=96.49  E-value=0.015  Score=50.82  Aligned_cols=81  Identities=19%  Similarity=0.163  Sum_probs=52.6

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHH-hcCCcEE---EEcCCchhHHHHHHHHhCC-CcccE
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIR-QKGAWAA---LTFTNEKSLVNKVLEVSGG-KYANV  235 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~-~~g~~~~---~~~~~~~~~~~~i~~~~~~-~g~d~  235 (296)
                      .|++++|+|++|++|..++..+ ...|++|++++++.++.+.+. +.+....   .+..+..+..+.+.+.... ..+|+
T Consensus         9 ~~k~vlItG~sg~IG~~~a~~l-~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~id~   87 (255)
T PRK05717          9 NGRVALVTGAARGIGLGIAAWL-IAEGWQVVLADLDRERGSKVAKALGENAWFIAMDVADEAQVAAGVAEVLGQFGRLDA   87 (255)
T ss_pred             CCCEEEEeCCcchHHHHHHHHH-HHcCCEEEEEcCCHHHHHHHHHHcCCceEEEEccCCCHHHHHHHHHHHHHHhCCCCE
Confidence            5789999999999999988877 457999999988776655443 3442221   2333323333333333211 25899


Q ss_pred             EEECCCC
Q psy1959         236 VFEAVGG  242 (296)
Q Consensus       236 vld~~g~  242 (296)
                      ++.+.|.
T Consensus        88 li~~ag~   94 (255)
T PRK05717         88 LVCNAAI   94 (255)
T ss_pred             EEECCCc
Confidence            9999884

>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional

Probab=96.49  E-value=0.014  Score=50.94  Aligned_cols=81  Identities=9%  Similarity=0.060  Sum_probs=50.9

Q ss_pred             CCcEEEEEcCC--CcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCc--EE--EEcCCchhHHHHHHHHhC-CCcc
Q psy1959         161 EKQTVLVTAAG--GGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAW--AA--LTFTNEKSLVNKVLEVSG-GKYA  233 (296)
Q Consensus       161 ~g~~vlI~Ga~--g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~--~~--~~~~~~~~~~~~i~~~~~-~~g~  233 (296)
                      .+++++|+|++  +++|.++++.+ ...|++|++..++++..+.++++...  ..  .+..+..+..+.+.+... ...+
T Consensus         6 ~~k~~lItGas~~~gIG~a~a~~l-a~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g~i   84 (252)
T PRK06079          6 SGKKIVVMGVANKRSIAWGCAQAI-KDQGATVIYTYQNDRMKKSLQKLVDEEDLLVECDVASDESIERAFATIKERVGKI   84 (252)
T ss_pred             CCCEEEEeCCCCCCchHHHHHHHH-HHCCCEEEEecCchHHHHHHHhhccCceeEEeCCCCCHHHHHHHHHHHHHHhCCC
Confidence            57899999998  79999987777 44799999998875433444443211  11  233332333333333321 1369


Q ss_pred             cEEEECCCC
Q psy1959         234 NVVFEAVGG  242 (296)
Q Consensus       234 d~vld~~g~  242 (296)
                      |+++++.|.
T Consensus        85 D~lv~nAg~   93 (252)
T PRK06079         85 DGIVHAIAY   93 (252)
T ss_pred             CEEEEcccc
Confidence            999999874

>PRK06194 hypothetical protein; Provisional

Probab=96.49  E-value=0.015  Score=51.57  Aligned_cols=81  Identities=16%  Similarity=0.183  Sum_probs=51.6

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHH-h---cCCcEE-E--EcCCchhHHHHHHHHh-CCCc
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIR-Q---KGAWAA-L--TFTNEKSLVNKVLEVS-GGKY  232 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~-~---~g~~~~-~--~~~~~~~~~~~i~~~~-~~~g  232 (296)
                      .+.++||+|++|++|...++.+ ...|++|++++++.++.+.+. +   .+.... +  +..+..++.+.+.+.. ....
T Consensus         5 ~~k~vlVtGasggIG~~la~~l-~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~g~   83 (287)
T PRK06194          5 AGKVAVITGAASGFGLAFARIG-AALGMKLVLADVQQDALDRAVAELRAQGAEVLGVRTDVSDAAQVEALADAALERFGA   83 (287)
T ss_pred             CCCEEEEeCCccHHHHHHHHHH-HHCCCEEEEEeCChHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence            3678999999999999988877 447999999998876654432 2   233221 2  2233233333333321 1136


Q ss_pred             ccEEEECCCC
Q psy1959         233 ANVVFEAVGG  242 (296)
Q Consensus       233 ~d~vld~~g~  242 (296)
                      +|+++.+.|.
T Consensus        84 id~vi~~Ag~   93 (287)
T PRK06194         84 VHLLFNNAGV   93 (287)
T ss_pred             CCEEEECCCC
Confidence            8999999985

>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated

Probab=96.47  E-value=0.024  Score=48.72  Aligned_cols=81  Identities=21%  Similarity=0.213  Sum_probs=53.1

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHH----HhcCCcEE---EEcCCchhHHHHHHHHhC-CCc
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLI----RQKGAWAA---LTFTNEKSLVNKVLEVSG-GKY  232 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~----~~~g~~~~---~~~~~~~~~~~~i~~~~~-~~g  232 (296)
                      ++.+++|+|++|++|...++.+ ...|.+|+++++++++.+.+    ++.+....   .+..+...+.+.+.+... -..
T Consensus         4 ~~~~ilItGasg~iG~~l~~~l-~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   82 (246)
T PRK05653          4 QGKTALVTGASRGIGRAIALRL-AADGAKVVIYDSNEEAAEALAAELRAAGGEARVLVFDVSDEAAVRALIEAAVEAFGA   82 (246)
T ss_pred             CCCEEEEECCCcHHHHHHHHHH-HHCCCEEEEEeCChhHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHHhCC
Confidence            3578999999999999988887 44799999999987775443    22343222   233332334444433321 125


Q ss_pred             ccEEEECCCC
Q psy1959         233 ANVVFEAVGG  242 (296)
Q Consensus       233 ~d~vld~~g~  242 (296)
                      +|.++.+.|.
T Consensus        83 id~vi~~ag~   92 (246)
T PRK05653         83 LDILVNNAGI   92 (246)
T ss_pred             CCEEEECCCc
Confidence            8999999875

>PRK07109 short chain dehydrogenase; Provisional

Probab=96.47  E-value=0.019  Score=52.60  Aligned_cols=81  Identities=16%  Similarity=0.132  Sum_probs=54.1

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHH----hcCCcEE---EEcCCchhHHHHHHHHhC-CCc
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIR----QKGAWAA---LTFTNEKSLVNKVLEVSG-GKY  232 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~----~~g~~~~---~~~~~~~~~~~~i~~~~~-~~g  232 (296)
                      ++++++|+|++|++|.++++.+ ...|++|+++++++++.+.+.    +.|....   .+..+..+..+.+.+... -..
T Consensus         7 ~~k~vlITGas~gIG~~la~~l-a~~G~~Vvl~~R~~~~l~~~~~~l~~~g~~~~~v~~Dv~d~~~v~~~~~~~~~~~g~   85 (334)
T PRK07109          7 GRQVVVITGASAGVGRATARAF-ARRGAKVVLLARGEEGLEALAAEIRAAGGEALAVVADVADAEAVQAAADRAEEELGP   85 (334)
T ss_pred             CCCEEEEECCCCHHHHHHHHHH-HHCCCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEecCCCHHHHHHHHHHHHHHCCC
Confidence            5679999999999999988877 457999999999887765443    3344332   233342333333333211 126


Q ss_pred             ccEEEECCCC
Q psy1959         233 ANVVFEAVGG  242 (296)
Q Consensus       233 ~d~vld~~g~  242 (296)
                      +|+++++.|.
T Consensus        86 iD~lInnAg~   95 (334)
T PRK07109         86 IDTWVNNAMV   95 (334)
T ss_pred             CCEEEECCCc
Confidence            8999999984

>PRK04148 hypothetical protein; Provisional

Probab=96.46  E-value=0.025  Score=44.64  Aligned_cols=49  Identities=14%  Similarity=0.094  Sum_probs=37.7

Q ss_pred             CCCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCcEE
Q psy1959         160 KEKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAA  211 (296)
Q Consensus       160 ~~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~~~  211 (296)
                      .++.++++.|. | .|...+..+ ...|.+|+++|.+++..+.+++.+...+
T Consensus        15 ~~~~kileIG~-G-fG~~vA~~L-~~~G~~ViaIDi~~~aV~~a~~~~~~~v   63 (134)
T PRK04148         15 GKNKKIVELGI-G-FYFKVAKKL-KESGFDVIVIDINEKAVEKAKKLGLNAF   63 (134)
T ss_pred             ccCCEEEEEEe-c-CCHHHHHHH-HHCCCEEEEEECCHHHHHHHHHhCCeEE
Confidence            45688999997 7 787444444 2369999999999999999988876544

>PRK08589 short chain dehydrogenase; Validated

Probab=96.46  E-value=0.017  Score=51.05  Aligned_cols=80  Identities=20%  Similarity=0.258  Sum_probs=51.0

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHH-HH---hcCCcE---EEEcCCchhHHHHHHHHhC-CCc
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDL-IR---QKGAWA---ALTFTNEKSLVNKVLEVSG-GKY  232 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~-~~---~~g~~~---~~~~~~~~~~~~~i~~~~~-~~g  232 (296)
                      ++++++|+|+++++|.+.++.+ ...|++|++++++ ++.+. +.   +.+...   ..+..+..+....+.+... ...
T Consensus         5 ~~k~vlItGas~gIG~aia~~l-~~~G~~vi~~~r~-~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~   82 (272)
T PRK08589          5 ENKVAVITGASTGIGQASAIAL-AQEGAYVLAVDIA-EAVSETVDKIKSNGGKAKAYHVDISDEQQVKDFASEIKEQFGR   82 (272)
T ss_pred             CCCEEEEECCCchHHHHHHHHH-HHCCCEEEEEeCc-HHHHHHHHHHHhcCCeEEEEEeecCCHHHHHHHHHHHHHHcCC
Confidence            5789999999999999988776 4479999999988 44332 22   223221   2344442333333333321 136


Q ss_pred             ccEEEECCCC
Q psy1959         233 ANVVFEAVGG  242 (296)
Q Consensus       233 ~d~vld~~g~  242 (296)
                      +|+++++.|.
T Consensus        83 id~li~~Ag~   92 (272)
T PRK08589         83 VDVLFNNAGV   92 (272)
T ss_pred             cCEEEECCCC
Confidence            8999999874

>PRK07890 short chain dehydrogenase; Provisional

Probab=96.45  E-value=0.017  Score=50.31  Aligned_cols=81  Identities=20%  Similarity=0.169  Sum_probs=53.3

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHh----cCCcE---EEEcCCchhHHHHHHHHhC-CCc
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQ----KGAWA---ALTFTNEKSLVNKVLEVSG-GKY  232 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~----~g~~~---~~~~~~~~~~~~~i~~~~~-~~g  232 (296)
                      ++++++|+|++|++|+++++.+ ...|++|+++++++++.+.+.+    .+...   ..+..+..+....+.+... -..
T Consensus         4 ~~k~vlItGa~~~IG~~la~~l-~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~   82 (258)
T PRK07890          4 KGKVVVVSGVGPGLGRTLAVRA-ARAGADVVLAARTAERLDEVAAEIDDLGRRALAVPTDITDEDQCANLVALALERFGR   82 (258)
T ss_pred             CCCEEEEECCCCcHHHHHHHHH-HHcCCEEEEEeCCHHHHHHHHHHHHHhCCceEEEecCCCCHHHHHHHHHHHHHHcCC
Confidence            5689999999999999988877 4579999999998876654432    23222   1233332333333333321 136


Q ss_pred             ccEEEECCCC
Q psy1959         233 ANVVFEAVGG  242 (296)
Q Consensus       233 ~d~vld~~g~  242 (296)
                      +|+++.+.|.
T Consensus        83 ~d~vi~~ag~   92 (258)
T PRK07890         83 VDALVNNAFR   92 (258)
T ss_pred             ccEEEECCcc
Confidence            8999998874

>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional

Probab=96.45  E-value=0.021  Score=49.85  Aligned_cols=81  Identities=15%  Similarity=0.160  Sum_probs=51.6

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcch--HHHHHhcCCcEE---EEcCCchhHHHHHHHHhC-CCccc
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDK--TDLIRQKGAWAA---LTFTNEKSLVNKVLEVSG-GKYAN  234 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~--~~~~~~~g~~~~---~~~~~~~~~~~~i~~~~~-~~g~d  234 (296)
                      ++++++|+|+++++|.++++.+ ...|++|+++++++..  .+.+++.+....   .+..+..+..+.+.+... -..+|
T Consensus         7 ~~k~~lItGas~gIG~aia~~l-~~~G~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~iD   85 (251)
T PRK12481          7 NGKVAIITGCNTGLGQGMAIGL-AKAGADIVGVGVAEAPETQAQVEALGRKFHFITADLIQQKDIDSIVSQAVEVMGHID   85 (251)
T ss_pred             CCCEEEEeCCCchHHHHHHHHH-HHCCCEEEEecCchHHHHHHHHHHcCCeEEEEEeCCCCHHHHHHHHHHHHHHcCCCC
Confidence            5789999999999999988877 4479999988765422  233344443321   333442344444433321 13699


Q ss_pred             EEEECCCC
Q psy1959         235 VVFEAVGG  242 (296)
Q Consensus       235 ~vld~~g~  242 (296)
                      +++++.|.
T Consensus        86 ~lv~~ag~   93 (251)
T PRK12481         86 ILINNAGI   93 (251)
T ss_pred             EEEECCCc
Confidence            99999884

>PTZ00075 Adenosylhomocysteinase; Provisional

Probab=96.45  E-value=0.074  Score=50.81  Aligned_cols=85  Identities=19%  Similarity=0.196  Sum_probs=62.0

Q ss_pred             CCCCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCcEEEEcCCchhHHHHHHHHhCCCcccEEEE
Q psy1959         159 LKEKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNKVLEVSGGKYANVVFE  238 (296)
Q Consensus       159 ~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~g~d~vld  238 (296)
                      .-.|++++|.|. |.+|..+++.+ +.+|++|++.++++.+...+...|+.. .      ++.+.+      +..|+++.
T Consensus       251 ~LaGKtVgVIG~-G~IGr~vA~rL-~a~Ga~ViV~e~dp~~a~~A~~~G~~~-~------~leell------~~ADIVI~  315 (476)
T PTZ00075        251 MIAGKTVVVCGY-GDVGKGCAQAL-RGFGARVVVTEIDPICALQAAMEGYQV-V------TLEDVV------ETADIFVT  315 (476)
T ss_pred             CcCCCEEEEECC-CHHHHHHHHHH-HHCCCEEEEEeCCchhHHHHHhcCcee-c------cHHHHH------hcCCEEEE
Confidence            347999999997 99999999999 678999999988777665555556432 1      122221      26899999


Q ss_pred             CCCCc-cHH-HHHHHhhccCceE
Q psy1959         239 AVGGE-DKT-DLIRQKGAWAALT  259 (296)
Q Consensus       239 ~~g~~-~~~-~~~~~lg~~~g~~  259 (296)
                      +.|.. .++ ..++.| ++++.+
T Consensus       316 atGt~~iI~~e~~~~M-KpGAiL  337 (476)
T PTZ00075        316 ATGNKDIITLEHMRRM-KNNAIV  337 (476)
T ss_pred             CCCcccccCHHHHhcc-CCCcEE
Confidence            99884 454 788888 666655

>PRK06179 short chain dehydrogenase; Provisional

Probab=96.44  E-value=0.01  Score=52.20  Aligned_cols=79  Identities=24%  Similarity=0.299  Sum_probs=52.4

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCcE-EEEcCCchhHHHHHHHHhC-CCcccEEEE
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWA-ALTFTNEKSLVNKVLEVSG-GKYANVVFE  238 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~i~~~~~-~~g~d~vld  238 (296)
                      .+++++|+|++|++|..+++.+ ...|++|++++++.++.+...  +... ..+..+..++.+.+.+... ...+|++++
T Consensus         3 ~~~~vlVtGasg~iG~~~a~~l-~~~g~~V~~~~r~~~~~~~~~--~~~~~~~D~~d~~~~~~~~~~~~~~~g~~d~li~   79 (270)
T PRK06179          3 NSKVALVTGASSGIGRATAEKL-ARAGYRVFGTSRNPARAAPIP--GVELLELDVTDDASVQAAVDEVIARAGRIDVLVN   79 (270)
T ss_pred             CCCEEEEecCCCHHHHHHHHHH-HHCCCEEEEEeCChhhccccC--CCeeEEeecCCHHHHHHHHHHHHHhCCCCCEEEE
Confidence            3568999999999999988777 447999999998766543221  2221 2344443444444444321 236899999


Q ss_pred             CCCC
Q psy1959         239 AVGG  242 (296)
Q Consensus       239 ~~g~  242 (296)
                      +.|.
T Consensus        80 ~ag~   83 (270)
T PRK06179         80 NAGV   83 (270)
T ss_pred             CCCC
Confidence            9984

>PRK12939 short chain dehydrogenase; Provisional

Probab=96.43  E-value=0.02  Score=49.45  Aligned_cols=81  Identities=17%  Similarity=0.068  Sum_probs=52.8

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHH----hcCCcEE---EEcCCchhHHHHHHHHhC-CCc
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIR----QKGAWAA---LTFTNEKSLVNKVLEVSG-GKY  232 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~----~~g~~~~---~~~~~~~~~~~~i~~~~~-~~g  232 (296)
                      ++.+++|+|++|++|+..+..+ ...|++|+++++++++.+.+.    +.+....   .+..+..+..+.+.+... ..+
T Consensus         6 ~~~~vlItGa~g~iG~~la~~l-~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~   84 (250)
T PRK12939          6 AGKRALVTGAARGLGAAFAEAL-AEAGATVAFNDGLAAEARELAAALEAAGGRAHAIAADLADPASVQRFFDAAAAALGG   84 (250)
T ss_pred             CCCEEEEeCCCChHHHHHHHHH-HHcCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence            5789999999999999988877 457999999998877655442    2232221   233332333333333221 137


Q ss_pred             ccEEEECCCC
Q psy1959         233 ANVVFEAVGG  242 (296)
Q Consensus       233 ~d~vld~~g~  242 (296)
                      +|+++.+.|.
T Consensus        85 id~vi~~ag~   94 (250)
T PRK12939         85 LDGLVNNAGI   94 (250)
T ss_pred             CCEEEECCCC
Confidence            9999999985

>KOG0725|consensus

Probab=96.43  E-value=0.015  Score=51.78  Aligned_cols=81  Identities=20%  Similarity=0.161  Sum_probs=53.3

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHh----cCCc---E---EEEcCCchhHHHHHHHHhC-
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQ----KGAW---A---ALTFTNEKSLVNKVLEVSG-  229 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~----~g~~---~---~~~~~~~~~~~~~i~~~~~-  229 (296)
                      .|+.++|+|++.++|.+.+..+ ...|++|+...+++++.+....    .+..   .   ..+..+..+..+.+..... 
T Consensus         7 ~gkvalVTG~s~GIG~aia~~l-a~~Ga~v~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~l~~~~~~~   85 (270)
T KOG0725|consen    7 AGKVALVTGGSSGIGKAIALLL-AKAGAKVVITGRSEERLEETAQELGGLGYTGGKVLAIVCDVSKEVDVEKLVEFAVEK   85 (270)
T ss_pred             CCcEEEEECCCChHHHHHHHHH-HHCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeeEEEECcCCCHHHHHHHHHHHHHH
Confidence            6889999999999998876666 3479999999999888655432    2221   1   1233332333333333322 


Q ss_pred             -CCcccEEEECCCC
Q psy1959         230 -GKYANVVFEAVGG  242 (296)
Q Consensus       230 -~~g~d~vld~~g~  242 (296)
                       ...+|+.+++.|.
T Consensus        86 ~~GkidiLvnnag~   99 (270)
T KOG0725|consen   86 FFGKIDILVNNAGA   99 (270)
T ss_pred             hCCCCCEEEEcCCc
Confidence             2369999999885

>PRK07454 short chain dehydrogenase; Provisional

Probab=96.42  E-value=0.02  Score=49.41  Aligned_cols=82  Identities=20%  Similarity=0.229  Sum_probs=53.4

Q ss_pred             CCCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHh----cCCcE-E--EEcCCchhHHHHHHHHhC-CC
Q psy1959         160 KEKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQ----KGAWA-A--LTFTNEKSLVNKVLEVSG-GK  231 (296)
Q Consensus       160 ~~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~----~g~~~-~--~~~~~~~~~~~~i~~~~~-~~  231 (296)
                      ..+++++|.|++|++|..++..+ ...|++|+++++++++.+.+.+    .+... .  .+..+..+....+.+... ..
T Consensus         4 ~~~k~vlItG~sg~iG~~la~~l-~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~   82 (241)
T PRK07454          4 NSMPRALITGASSGIGKATALAF-AKAGWDLALVARSQDALEALAAELRSTGVKAAAYSIDLSNPEAIAPGIAELLEQFG   82 (241)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHH-HHCCCEEEEEeCCHHHHHHHHHHHHhCCCcEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence            35678999999999999988888 4579999999998776654432    22222 1  233332333333333321 13


Q ss_pred             cccEEEECCCC
Q psy1959         232 YANVVFEAVGG  242 (296)
Q Consensus       232 g~d~vld~~g~  242 (296)
                      .+|+++.+.|.
T Consensus        83 ~id~lv~~ag~   93 (241)
T PRK07454         83 CPDVLINNAGM   93 (241)
T ss_pred             CCCEEEECCCc
Confidence            58999999984

>PRK06463 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=96.41  E-value=0.025  Score=49.37  Aligned_cols=81  Identities=22%  Similarity=0.244  Sum_probs=51.8

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCC-cchHHHHHhcCCcEE-EEcCCchhHHHHHHHHhC-CCcccEEE
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNS-EDKTDLIRQKGAWAA-LTFTNEKSLVNKVLEVSG-GKYANVVF  237 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~-~~~~~~~~~~g~~~~-~~~~~~~~~~~~i~~~~~-~~g~d~vl  237 (296)
                      .+++++|+|++|++|.++++.+ ...|++|+++.++ ++..+.+++.+...+ .+..+..+..+.+.+... ...+|+++
T Consensus         6 ~~k~~lItGas~gIG~~~a~~l-~~~G~~v~~~~~~~~~~~~~l~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~id~li   84 (255)
T PRK06463          6 KGKVALITGGTRGIGRAIAEAF-LREGAKVAVLYNSAENEAKELREKGVFTIKCDVGNRDQVKKSKEVVEKEFGRVDVLV   84 (255)
T ss_pred             CCCEEEEeCCCChHHHHHHHHH-HHCCCEEEEEeCCcHHHHHHHHhCCCeEEEecCCCHHHHHHHHHHHHHHcCCCCEEE
Confidence            4689999999999999988777 4479999887654 334445544443222 344442344444443321 23689999


Q ss_pred             ECCCC
Q psy1959         238 EAVGG  242 (296)
Q Consensus       238 d~~g~  242 (296)
                      .+.|.
T Consensus        85 ~~ag~   89 (255)
T PRK06463         85 NNAGI   89 (255)
T ss_pred             ECCCc
Confidence            99874

>PRK08628 short chain dehydrogenase; Provisional

Probab=96.40  E-value=0.019  Score=50.12  Aligned_cols=81  Identities=15%  Similarity=0.115  Sum_probs=52.9

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHh---cCCcEE---EEcCCchhHHHHHHHHhC-CCcc
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQ---KGAWAA---LTFTNEKSLVNKVLEVSG-GKYA  233 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~---~g~~~~---~~~~~~~~~~~~i~~~~~-~~g~  233 (296)
                      ++.+++|+|++|++|..+++.+ ...|++|+++++++++.+..++   .+....   .+..+..+....+.+... ..++
T Consensus         6 ~~~~ilItGasggiG~~la~~l-~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i   84 (258)
T PRK08628          6 KDKVVIVTGGASGIGAAISLRL-AEEGAIPVIFGRSAPDDEFAEELRALQPRAEFVQVDLTDDAQCRDAVEQTVAKFGRI   84 (258)
T ss_pred             CCCEEEEeCCCChHHHHHHHHH-HHcCCcEEEEcCChhhHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHhcCCC
Confidence            4679999999999999977777 3479999999988776644333   233222   233332334443443322 1368


Q ss_pred             cEEEECCCC
Q psy1959         234 NVVFEAVGG  242 (296)
Q Consensus       234 d~vld~~g~  242 (296)
                      |+++.+.|.
T Consensus        85 d~vi~~ag~   93 (258)
T PRK08628         85 DGLVNNAGV   93 (258)
T ss_pred             CEEEECCcc
Confidence            999999984

>PRK06505 enoyl-(acyl carrier protein) reductase; Provisional

Probab=96.40  E-value=0.017  Score=51.20  Aligned_cols=81  Identities=10%  Similarity=0.016  Sum_probs=51.1

Q ss_pred             CCcEEEEEcCCC--cHHHHHHHHHHHhCCCEEEEEeCCcchH---HHH-HhcCCcEE--EEcCCchhHHHHHHHHhC-CC
Q psy1959         161 EKQTVLVTAAGG--GLGLAAVDMATKIYKAKVIGVCNSEDKT---DLI-RQKGAWAA--LTFTNEKSLVNKVLEVSG-GK  231 (296)
Q Consensus       161 ~g~~vlI~Ga~g--~vG~aa~~la~~~~g~~Vi~~~~~~~~~---~~~-~~~g~~~~--~~~~~~~~~~~~i~~~~~-~~  231 (296)
                      ++++++|+|+++  ++|.++++.+ ...|++|++.+++++..   +.+ ++.|....  .+..+..+..+.+.+... -.
T Consensus         6 ~~k~~lVTGas~~~GIG~aiA~~l-a~~Ga~V~~~~r~~~~~~~~~~~~~~~g~~~~~~~Dv~d~~~v~~~~~~~~~~~g   84 (271)
T PRK06505          6 QGKRGLIMGVANDHSIAWGIAKQL-AAQGAELAFTYQGEALGKRVKPLAESLGSDFVLPCDVEDIASVDAVFEALEKKWG   84 (271)
T ss_pred             CCCEEEEeCCCCCCcHHHHHHHHH-HhCCCEEEEecCchHHHHHHHHHHHhcCCceEEeCCCCCHHHHHHHHHHHHHHhC
Confidence            578999999976  9999987777 45799999988765322   222 23343322  233342334444443322 13


Q ss_pred             cccEEEECCCC
Q psy1959         232 YANVVFEAVGG  242 (296)
Q Consensus       232 g~d~vld~~g~  242 (296)
                      .+|+++++.|.
T Consensus        85 ~iD~lVnnAG~   95 (271)
T PRK06505         85 KLDFVVHAIGF   95 (271)
T ss_pred             CCCEEEECCcc
Confidence            69999999984

>PRK06138 short chain dehydrogenase; Provisional

Probab=96.39  E-value=0.016  Score=50.20  Aligned_cols=81  Identities=20%  Similarity=0.192  Sum_probs=51.8

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHh-c--CCcE-E--EEcCCchhHHHHHHHHh-CCCcc
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQ-K--GAWA-A--LTFTNEKSLVNKVLEVS-GGKYA  233 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~-~--g~~~-~--~~~~~~~~~~~~i~~~~-~~~g~  233 (296)
                      ++++++|+|++|++|...++.+ ...|++|+.+.++.++.....+ .  +... .  .+..+..+..+.+.+.. ....+
T Consensus         4 ~~k~~lItG~sg~iG~~la~~l-~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~i~~~~~~i   82 (252)
T PRK06138          4 AGRVAIVTGAGSGIGRATAKLF-AREGARVVVADRDAEAAERVAAAIAAGGRAFARQGDVGSAEAVEALVDFVAARWGRL   82 (252)
T ss_pred             CCcEEEEeCCCchHHHHHHHHH-HHCCCeEEEecCCHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHcCCC
Confidence            4679999999999999988876 3469999999988776554332 2  2221 1  23333233333333321 12378


Q ss_pred             cEEEECCCC
Q psy1959         234 NVVFEAVGG  242 (296)
Q Consensus       234 d~vld~~g~  242 (296)
                      |+++.+.|.
T Consensus        83 d~vi~~ag~   91 (252)
T PRK06138         83 DVLVNNAGF   91 (252)
T ss_pred             CEEEECCCC
Confidence            999999984

>PLN02253 xanthoxin dehydrogenase

Probab=96.39  E-value=0.021  Score=50.58  Aligned_cols=81  Identities=20%  Similarity=0.102  Sum_probs=51.9

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHH-hcCC--cE---EEEcCCchhHHHHHHHHhC-CCcc
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIR-QKGA--WA---ALTFTNEKSLVNKVLEVSG-GKYA  233 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~-~~g~--~~---~~~~~~~~~~~~~i~~~~~-~~g~  233 (296)
                      .+++++|+|++|++|.+.++.+ ...|++|+++++++++.+.+. +++.  ..   ..+..+.....+.+.+... -.++
T Consensus        17 ~~k~~lItGas~gIG~~la~~l-~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~~~g~i   95 (280)
T PLN02253         17 LGKVALVTGGATGIGESIVRLF-HKHGAKVCIVDLQDDLGQNVCDSLGGEPNVCFFHCDVTVEDDVSRAVDFTVDKFGTL   95 (280)
T ss_pred             CCCEEEEECCCchHHHHHHHHH-HHcCCEEEEEeCCHHHHHHHHHHhcCCCceEEEEeecCCHHHHHHHHHHHHHHhCCC
Confidence            4789999999999999988777 347999999998776654443 2221  11   1333442333333333221 1369


Q ss_pred             cEEEECCCC
Q psy1959         234 NVVFEAVGG  242 (296)
Q Consensus       234 d~vld~~g~  242 (296)
                      |+++++.|.
T Consensus        96 d~li~~Ag~  104 (280)
T PLN02253         96 DIMVNNAGL  104 (280)
T ss_pred             CEEEECCCc
Confidence            999999874

>PRK07677 short chain dehydrogenase; Provisional

Probab=96.37  E-value=0.017  Score=50.28  Aligned_cols=80  Identities=14%  Similarity=0.176  Sum_probs=52.3

Q ss_pred             CcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHh----cCCcE-EE--EcCCchhHHHHHHHHhC-CCcc
Q psy1959         162 KQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQ----KGAWA-AL--TFTNEKSLVNKVLEVSG-GKYA  233 (296)
Q Consensus       162 g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~----~g~~~-~~--~~~~~~~~~~~i~~~~~-~~g~  233 (296)
                      |++++|+|++|++|.+.++.+ ...|++|+++++++++.+.+.+    .+... .+  +..+..+..+.+.+... -..+
T Consensus         1 ~k~~lItG~s~giG~~ia~~l-~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i   79 (252)
T PRK07677          1 EKVVIITGGSSGMGKAMAKRF-AEEGANVVITGRTKEKLEEAKLEIEQFPGQVLTVQMDVRNPEDVQKMVEQIDEKFGRI   79 (252)
T ss_pred             CCEEEEeCCCChHHHHHHHHH-HHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHHhCCc
Confidence            468999999999999988888 4579999999988776654432    22221 22  33332334333333321 1368


Q ss_pred             cEEEECCCC
Q psy1959         234 NVVFEAVGG  242 (296)
Q Consensus       234 d~vld~~g~  242 (296)
                      |+++++.|.
T Consensus        80 d~lI~~ag~   88 (252)
T PRK07677         80 DALINNAAG   88 (252)
T ss_pred             cEEEECCCC
Confidence            999999874

>TIGR00518 alaDH alanine dehydrogenase

Probab=96.37  E-value=0.042  Score=51.19  Aligned_cols=90  Identities=22%  Similarity=0.233  Sum_probs=60.0

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHh-cCCcEEEEcCCchhHHHHHHHHhCCCcccEEEEC
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQ-KGAWAALTFTNEKSLVNKVLEVSGGKYANVVFEA  239 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~~~g~d~vld~  239 (296)
                      ++.+|+|.|+ |.+|+.+++.+ +.+|++|++++++.++.+.+.+ ++........+    .+.+.+..  ..+|++|++
T Consensus       166 ~~~~VlViGa-G~vG~~aa~~a-~~lGa~V~v~d~~~~~~~~l~~~~g~~v~~~~~~----~~~l~~~l--~~aDvVI~a  237 (370)
T TIGR00518       166 EPGDVTIIGG-GVVGTNAAKMA-NGLGATVTILDINIDRLRQLDAEFGGRIHTRYSN----AYEIEDAV--KRADLLIGA  237 (370)
T ss_pred             CCceEEEEcC-CHHHHHHHHHH-HHCCCeEEEEECCHHHHHHHHHhcCceeEeccCC----HHHHHHHH--ccCCEEEEc
Confidence            3456899997 99999999999 6789999999998888877754 44432222222    12233333  268999999


Q ss_pred             C---CC--c--cHHHHHHHhhccCceE
Q psy1959         240 V---GG--E--DKTDLIRQKGAWAALT  259 (296)
Q Consensus       240 ~---g~--~--~~~~~~~~lg~~~g~~  259 (296)
                      +   +.  .  .....++.+ ++++.+
T Consensus       238 ~~~~g~~~p~lit~~~l~~m-k~g~vI  263 (370)
T TIGR00518       238 VLIPGAKAPKLVSNSLVAQM-KPGAVI  263 (370)
T ss_pred             cccCCCCCCcCcCHHHHhcC-CCCCEE
Confidence            8   33  2  135666777 555443

The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.

>PRK07035 short chain dehydrogenase; Provisional

Probab=96.37  E-value=0.017  Score=50.13  Aligned_cols=81  Identities=16%  Similarity=0.168  Sum_probs=52.0

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHh----cCCcEE---EEcCCchhHHHHHHHHhC-CCc
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQ----KGAWAA---LTFTNEKSLVNKVLEVSG-GKY  232 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~----~g~~~~---~~~~~~~~~~~~i~~~~~-~~g  232 (296)
                      ++.+++|+|++|++|.+.++.+ ...|++|+.++++.++.+.+.+    .+....   .+..+..+..+.+.+... -..
T Consensus         7 ~~k~vlItGas~gIG~~l~~~l-~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   85 (252)
T PRK07035          7 TGKIALVTGASRGIGEAIAKLL-AQQGAHVIVSSRKLDGCQAVADAIVAAGGKAEALACHIGEMEQIDALFAHIRERHGR   85 (252)
T ss_pred             CCCEEEEECCCcHHHHHHHHHH-HHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence            4678999999999999988888 4579999999988766544332    232221   233332333333333321 125


Q ss_pred             ccEEEECCCC
Q psy1959         233 ANVVFEAVGG  242 (296)
Q Consensus       233 ~d~vld~~g~  242 (296)
                      +|+++.+.|.
T Consensus        86 id~li~~ag~   95 (252)
T PRK07035         86 LDILVNNAAA   95 (252)
T ss_pred             CCEEEECCCc
Confidence            8999998873

>PRK08213 gluconate 5-dehydrogenase; Provisional

Probab=96.36  E-value=0.017  Score=50.46  Aligned_cols=81  Identities=19%  Similarity=0.184  Sum_probs=53.4

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHH----hcCCcEE---EEcCCchhHHHHHHHHhC-CCc
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIR----QKGAWAA---LTFTNEKSLVNKVLEVSG-GKY  232 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~----~~g~~~~---~~~~~~~~~~~~i~~~~~-~~g  232 (296)
                      ++++++|+|++|++|..+++.+ ...|++|++++++.++.+.+.    ..+....   .+..+..++.+.+.+... ...
T Consensus        11 ~~k~ilItGa~g~IG~~la~~l-~~~G~~V~~~~r~~~~~~~~~~~i~~~~~~~~~~~~Dl~d~~~i~~~~~~~~~~~~~   89 (259)
T PRK08213         11 SGKTALVTGGSRGLGLQIAEAL-GEAGARVVLSARKAEELEEAAAHLEALGIDALWIAADVADEADIERLAEETLERFGH   89 (259)
T ss_pred             CCCEEEEECCCchHHHHHHHHH-HHcCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHHHhCC
Confidence            5789999999999999988888 457999999999877665443    2232221   233332333333333221 136


Q ss_pred             ccEEEECCCC
Q psy1959         233 ANVVFEAVGG  242 (296)
Q Consensus       233 ~d~vld~~g~  242 (296)
                      +|.++.+.|.
T Consensus        90 id~vi~~ag~   99 (259)
T PRK08213         90 VDILVNNAGA   99 (259)
T ss_pred             CCEEEECCCC
Confidence            8999999874

>PRK07576 short chain dehydrogenase; Provisional

Probab=96.36  E-value=0.023  Score=50.01  Aligned_cols=80  Identities=15%  Similarity=0.146  Sum_probs=52.9

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHH----hcCCcEE---EEcCCchhHHHHHHHHhC-CCc
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIR----QKGAWAA---LTFTNEKSLVNKVLEVSG-GKY  232 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~----~~g~~~~---~~~~~~~~~~~~i~~~~~-~~g  232 (296)
                      ++++++|+|++|++|...++.+ ...|++|+++++++++.+.+.    +.+....   .+..+..+..+.+.+... ..+
T Consensus         8 ~~k~ilItGasggIG~~la~~l-~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~i~~~~~~~~~~~~~   86 (264)
T PRK07576          8 AGKNVVVVGGTSGINLGIAQAF-ARAGANVAVASRSQEKVDAAVAQLQQAGPEGLGVSADVRDYAAVEAAFAQIADEFGP   86 (264)
T ss_pred             CCCEEEEECCCchHHHHHHHHH-HHCCCEEEEEeCCHHHHHHHHHHHHHhCCceEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence            5789999999999999988877 457999999998877654332    2232221   233332344444444321 236


Q ss_pred             ccEEEECCC
Q psy1959         233 ANVVFEAVG  241 (296)
Q Consensus       233 ~d~vld~~g  241 (296)
                      +|+++.+.|
T Consensus        87 iD~vi~~ag   95 (264)
T PRK07576         87 IDVLVSGAA   95 (264)
T ss_pred             CCEEEECCC
Confidence            899999886

>PRK05876 short chain dehydrogenase; Provisional

Probab=96.35  E-value=0.019  Score=51.06  Aligned_cols=81  Identities=16%  Similarity=0.078  Sum_probs=52.6

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHH----hcCCcEE---EEcCCchhHHHHHHHHhC-CCc
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIR----QKGAWAA---LTFTNEKSLVNKVLEVSG-GKY  232 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~----~~g~~~~---~~~~~~~~~~~~i~~~~~-~~g  232 (296)
                      ++++++|+|++|++|.+.+..+ ...|++|+++++++++.+.+.    ..+....   .+..+..+..+.+.+... ...
T Consensus         5 ~~k~vlVTGas~gIG~ala~~L-a~~G~~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~   83 (275)
T PRK05876          5 PGRGAVITGGASGIGLATGTEF-ARRGARVVLGDVDKPGLRQAVNHLRAEGFDVHGVMCDVRHREEVTHLADEAFRLLGH   83 (275)
T ss_pred             CCCEEEEeCCCchHHHHHHHHH-HHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHcCC
Confidence            4789999999999999988877 457999999998877655432    2343222   233332333333333211 126


Q ss_pred             ccEEEECCCC
Q psy1959         233 ANVVFEAVGG  242 (296)
Q Consensus       233 ~d~vld~~g~  242 (296)
                      +|+++++.|.
T Consensus        84 id~li~nAg~   93 (275)
T PRK05876         84 VDVVFSNAGI   93 (275)
T ss_pred             CCEEEECCCc
Confidence            8999999883

>PRK06125 short chain dehydrogenase; Provisional

Probab=96.33  E-value=0.034  Score=48.62  Aligned_cols=78  Identities=18%  Similarity=0.246  Sum_probs=51.7

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHh----c-CCcE-E--EEcCCchhHHHHHHHHhCCCc
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQ----K-GAWA-A--LTFTNEKSLVNKVLEVSGGKY  232 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~----~-g~~~-~--~~~~~~~~~~~~i~~~~~~~g  232 (296)
                      .+++++|.|+++++|...++.+ ...|++|+++++++++.+.+.+    . +... .  .+..+..+..+.+.. .  ..
T Consensus         6 ~~k~vlItG~~~giG~~ia~~l-~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~-~--g~   81 (259)
T PRK06125          6 AGKRVLITGASKGIGAAAAEAF-AAEGCHLHLVARDADALEALAADLRAAHGVDVAVHALDLSSPEAREQLAAE-A--GD   81 (259)
T ss_pred             CCCEEEEeCCCchHHHHHHHHH-HHcCCEEEEEeCCHHHHHHHHHHHHhhcCCceEEEEecCCCHHHHHHHHHH-h--CC
Confidence            4789999999999999988877 4579999999998776655432    1 2221 1  233332333333322 2  36


Q ss_pred             ccEEEECCCC
Q psy1959         233 ANVVFEAVGG  242 (296)
Q Consensus       233 ~d~vld~~g~  242 (296)
                      +|+++.+.|.
T Consensus        82 id~lv~~ag~   91 (259)
T PRK06125         82 IDILVNNAGA   91 (259)
T ss_pred             CCEEEECCCC
Confidence            9999999884

>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional

Probab=96.33  E-value=0.024  Score=49.42  Aligned_cols=81  Identities=20%  Similarity=0.155  Sum_probs=52.4

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHH----HhcCCcEEE---EcCCchhHHHHHHHHh-CCCc
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLI----RQKGAWAAL---TFTNEKSLVNKVLEVS-GGKY  232 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~----~~~g~~~~~---~~~~~~~~~~~i~~~~-~~~g  232 (296)
                      ++++++|+|++|++|..+++.+ ...|++|+++++++++.+.+    ++.+....+   +..+...+.+.+.+.. ....
T Consensus         6 ~~~~vlItGasg~iG~~la~~l-~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~   84 (262)
T PRK13394          6 NGKTAVVTGAASGIGKEIALEL-ARAGAAVAIADLNQDGANAVADEINKAGGKAIGVAMDVTNEDAVNAGIDKVAERFGS   84 (262)
T ss_pred             CCCEEEEECCCChHHHHHHHHH-HHCCCeEEEEeCChHHHHHHHHHHHhcCceEEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence            4789999999999999988877 45799999999988665443    233433222   2233233333333221 1136


Q ss_pred             ccEEEECCCC
Q psy1959         233 ANVVFEAVGG  242 (296)
Q Consensus       233 ~d~vld~~g~  242 (296)
                      +|+++.+.|.
T Consensus        85 ~d~vi~~ag~   94 (262)
T PRK13394         85 VDILVSNAGI   94 (262)
T ss_pred             CCEEEECCcc
Confidence            8999999874

>PRK05884 short chain dehydrogenase; Provisional

Probab=96.33  E-value=0.028  Score=48.27  Aligned_cols=75  Identities=19%  Similarity=0.080  Sum_probs=50.9

Q ss_pred             EEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHH-hcCCcEE-EEcCCchhHHHHHHHHhCCCcccEEEECCC
Q psy1959         164 TVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIR-QKGAWAA-LTFTNEKSLVNKVLEVSGGKYANVVFEAVG  241 (296)
Q Consensus       164 ~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~-~~g~~~~-~~~~~~~~~~~~i~~~~~~~g~d~vld~~g  241 (296)
                      +++|+|++|++|++.++.+ ...|++|+.+++++++.+.+. +.+...+ .+..+..+..+.+.+..  +.+|+++++.|
T Consensus         2 ~vlItGas~giG~~ia~~l-~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~--~~id~lv~~ag   78 (223)
T PRK05884          2 EVLVTGGDTDLGRTIAEGF-RNDGHKVTLVGARRDDLEVAAKELDVDAIVCDNTDPASLEEARGLFP--HHLDTIVNVPA   78 (223)
T ss_pred             eEEEEeCCchHHHHHHHHH-HHCCCEEEEEeCCHHHHHHHHHhccCcEEecCCCCHHHHHHHHHHHh--hcCcEEEECCC
Confidence            4899999999999988877 447999999999888776553 3343322 33444233444333332  26899999875

>PRK07453 protochlorophyllide oxidoreductase; Validated

Probab=96.32  E-value=0.02  Score=51.97  Aligned_cols=80  Identities=23%  Similarity=0.230  Sum_probs=52.1

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHH-hcC---CcE-E--EEcCCchhHHHHHHHHh-CCCc
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIR-QKG---AWA-A--LTFTNEKSLVNKVLEVS-GGKY  232 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~-~~g---~~~-~--~~~~~~~~~~~~i~~~~-~~~g  232 (296)
                      .+++++|+|++|++|..+++.+ ...|++|+++++++++.+.+. ++.   ... .  .+..+..+..+.+.+.. ....
T Consensus         5 ~~k~vlVTGas~gIG~~~a~~L-~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~~~   83 (322)
T PRK07453          5 AKGTVIITGASSGVGLYAAKAL-AKRGWHVIMACRNLKKAEAAAQELGIPPDSYTIIHIDLGDLDSVRRFVDDFRALGKP   83 (322)
T ss_pred             CCCEEEEEcCCChHHHHHHHHH-HHCCCEEEEEECCHHHHHHHHHHhhccCCceEEEEecCCCHHHHHHHHHHHHHhCCC
Confidence            4788999999999999988777 446999999999887765443 221   111 1  23333233333333322 1235


Q ss_pred             ccEEEECCC
Q psy1959         233 ANVVFEAVG  241 (296)
Q Consensus       233 ~d~vld~~g  241 (296)
                      +|+++++.|
T Consensus        84 iD~li~nAg   92 (322)
T PRK07453         84 LDALVCNAA   92 (322)
T ss_pred             ccEEEECCc
Confidence            999999988

>PRK10538 malonic semialdehyde reductase; Provisional

Probab=96.31  E-value=0.027  Score=48.92  Aligned_cols=78  Identities=19%  Similarity=0.222  Sum_probs=52.7

Q ss_pred             EEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHh-cCCcEE---EEcCCchhHHHHHHHHhC-CCcccEEEE
Q psy1959         164 TVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQ-KGAWAA---LTFTNEKSLVNKVLEVSG-GKYANVVFE  238 (296)
Q Consensus       164 ~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~-~g~~~~---~~~~~~~~~~~~i~~~~~-~~g~d~vld  238 (296)
                      +++|+|++|++|.+.+..+ ...|++|+++++++++.+.+.+ .+....   .+..+..+..+.+.+... ..++|+++.
T Consensus         2 ~vlItGasg~iG~~la~~l-~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~i~~~~~~~~~~~~~id~vi~   80 (248)
T PRK10538          2 IVLVTGATAGFGECITRRF-IQQGHKVIATGRRQERLQELKDELGDNLYIAQLDVRNRAAIEEMLASLPAEWRNIDVLVN   80 (248)
T ss_pred             EEEEECCCchHHHHHHHHH-HHCCCEEEEEECCHHHHHHHHHHhccceEEEEecCCCHHHHHHHHHHHHHHcCCCCEEEE
Confidence            6899999999999988888 4579999999998887766644 333221   233332333333333321 236999999


Q ss_pred             CCCC
Q psy1959         239 AVGG  242 (296)
Q Consensus       239 ~~g~  242 (296)
                      +.|.
T Consensus        81 ~ag~   84 (248)
T PRK10538         81 NAGL   84 (248)
T ss_pred             CCCc
Confidence            8874

>PRK07063 short chain dehydrogenase; Provisional

Probab=96.30  E-value=0.026  Score=49.33  Aligned_cols=81  Identities=21%  Similarity=0.113  Sum_probs=52.7

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHh-c-----CCcE-E--EEcCCchhHHHHHHHHhC-C
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQ-K-----GAWA-A--LTFTNEKSLVNKVLEVSG-G  230 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~-~-----g~~~-~--~~~~~~~~~~~~i~~~~~-~  230 (296)
                      .+++++|+|+++++|.++++.+ ...|++|+.+++++++.+.+.+ +     +... .  .+..+..+..+.+.+... -
T Consensus         6 ~~k~vlVtGas~gIG~~~a~~l-~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~   84 (260)
T PRK07063          6 AGKVALVTGAAQGIGAAIARAF-AREGAAVALADLDAALAERAAAAIARDVAGARVLAVPADVTDAASVAAAVAAAEEAF   84 (260)
T ss_pred             CCCEEEEECCCchHHHHHHHHH-HHCCCEEEEEeCCHHHHHHHHHHHHhccCCceEEEEEccCCCHHHHHHHHHHHHHHh
Confidence            4689999999999999988877 4579999999998776654432 1     2211 1  233332333333333221 1


Q ss_pred             CcccEEEECCCC
Q psy1959         231 KYANVVFEAVGG  242 (296)
Q Consensus       231 ~g~d~vld~~g~  242 (296)
                      ..+|+++.+.|.
T Consensus        85 g~id~li~~ag~   96 (260)
T PRK07063         85 GPLDVLVNNAGI   96 (260)
T ss_pred             CCCcEEEECCCc
Confidence            369999999884

>KOG1201|consensus

Probab=96.30  E-value=0.021  Score=50.82  Aligned_cols=78  Identities=23%  Similarity=0.313  Sum_probs=51.6

Q ss_pred             CCcEEEEEcCCCcHHHH-HHHHHHHhCCCEEEEEeCCcchH----HHHHhcCCcE--EEEcCCchhH---HHHHHHHhCC
Q psy1959         161 EKQTVLVTAAGGGLGLA-AVDMATKIYKAKVIGVCNSEDKT----DLIRQKGAWA--ALTFTNEKSL---VNKVLEVSGG  230 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~a-a~~la~~~~g~~Vi~~~~~~~~~----~~~~~~g~~~--~~~~~~~~~~---~~~i~~~~~~  230 (296)
                      .|+.|||+|+++|+|++ +.++| + +|+++++.|.+++..    +.+++.|-.+  ..+..+.++.   .+.+++..  
T Consensus        37 ~g~~vLITGgg~GlGr~ialefa-~-rg~~~vl~Din~~~~~etv~~~~~~g~~~~y~cdis~~eei~~~a~~Vk~e~--  112 (300)
T KOG1201|consen   37 SGEIVLITGGGSGLGRLIALEFA-K-RGAKLVLWDINKQGNEETVKEIRKIGEAKAYTCDISDREEIYRLAKKVKKEV--  112 (300)
T ss_pred             cCCEEEEeCCCchHHHHHHHHHH-H-hCCeEEEEeccccchHHHHHHHHhcCceeEEEecCCCHHHHHHHHHHHHHhc--
Confidence            69999999999999987 66666 4 699999999876643    3444445222  2333432333   33344333  


Q ss_pred             CcccEEEECCCC
Q psy1959         231 KYANVVFEAVGG  242 (296)
Q Consensus       231 ~g~d~vld~~g~  242 (296)
                      ..+|+++++.|-
T Consensus       113 G~V~ILVNNAGI  124 (300)
T KOG1201|consen  113 GDVDILVNNAGI  124 (300)
T ss_pred             CCceEEEecccc
Confidence            369999999983

>PRK08264 short chain dehydrogenase; Validated

Probab=96.30  E-value=0.031  Score=48.01  Aligned_cols=75  Identities=23%  Similarity=0.254  Sum_probs=49.9

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCC-EEEEEeCCcchHHHHHhcCCcE-E--EEcCCchhHHHHHHHHhCCCcccEE
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKA-KVIGVCNSEDKTDLIRQKGAWA-A--LTFTNEKSLVNKVLEVSGGKYANVV  236 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~-~Vi~~~~~~~~~~~~~~~g~~~-~--~~~~~~~~~~~~i~~~~~~~g~d~v  236 (296)
                      .+.+++|+|++|++|..+++.+ ...|+ +|++++++.++.+.   .+... .  .+..+..++.+.+.+ .  ..+|++
T Consensus         5 ~~~~vlItGgsg~iG~~la~~l-~~~G~~~V~~~~r~~~~~~~---~~~~~~~~~~D~~~~~~~~~~~~~-~--~~id~v   77 (238)
T PRK08264          5 KGKVVLVTGANRGIGRAFVEQL-LARGAAKVYAAARDPESVTD---LGPRVVPLQLDVTDPASVAAAAEA-A--SDVTIL   77 (238)
T ss_pred             CCCEEEEECCCchHHHHHHHHH-HHCCcccEEEEecChhhhhh---cCCceEEEEecCCCHHHHHHHHHh-c--CCCCEE
Confidence            5678999999999999988887 45798 99999988766543   22221 1  233332333322222 2  358999


Q ss_pred             EECCCC
Q psy1959         237 FEAVGG  242 (296)
Q Consensus       237 ld~~g~  242 (296)
                      +.+.|.
T Consensus        78 i~~ag~   83 (238)
T PRK08264         78 VNNAGI   83 (238)
T ss_pred             EECCCc
Confidence            999886

>PRK09186 flagellin modification protein A; Provisional

Probab=96.29  E-value=0.026  Score=49.02  Aligned_cols=80  Identities=19%  Similarity=0.132  Sum_probs=52.2

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHH-hc----CCc---E-EEEcCCchhHHHHHHHHhC-C
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIR-QK----GAW---A-ALTFTNEKSLVNKVLEVSG-G  230 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~-~~----g~~---~-~~~~~~~~~~~~~i~~~~~-~  230 (296)
                      ++++++|+|++|++|.+.+..+ ...|++|+.+++++++.+.+. ++    +..   . ..+..+..+..+.+.+... -
T Consensus         3 ~~k~vlItGas~giG~~~a~~l-~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~~~   81 (256)
T PRK09186          3 KGKTILITGAGGLIGSALVKAI-LEAGGIVIAADIDKEALNELLESLGKEFKSKKLSLVELDITDQESLEEFLSKSAEKY   81 (256)
T ss_pred             CCCEEEEECCCchHHHHHHHHH-HHCCCEEEEEecChHHHHHHHHHHHhhcCCCceeEEEecCCCHHHHHHHHHHHHHHc
Confidence            5789999999999999988887 457999999998877765442 21    211   1 2244442334343443321 1


Q ss_pred             CcccEEEECCC
Q psy1959         231 KYANVVFEAVG  241 (296)
Q Consensus       231 ~g~d~vld~~g  241 (296)
                      ..+|+++.+.+
T Consensus        82 ~~id~vi~~A~   92 (256)
T PRK09186         82 GKIDGAVNCAY   92 (256)
T ss_pred             CCccEEEECCc
Confidence            35899999886

>PRK08340 glucose-1-dehydrogenase; Provisional

Probab=96.28  E-value=0.025  Score=49.51  Aligned_cols=78  Identities=22%  Similarity=0.199  Sum_probs=50.8

Q ss_pred             EEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHh----cCCcEE--EEcCCchhHHHHHHHHhC-CCcccEE
Q psy1959         164 TVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQ----KGAWAA--LTFTNEKSLVNKVLEVSG-GKYANVV  236 (296)
Q Consensus       164 ~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~----~g~~~~--~~~~~~~~~~~~i~~~~~-~~g~d~v  236 (296)
                      +++|+|+++++|.+.++.+ ...|++|+++++++++.+.+.+    .+....  .+..+..+..+.+.+... ...+|++
T Consensus         2 ~vlItGas~gIG~aia~~l-~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~Dv~d~~~~~~~~~~~~~~~g~id~l   80 (259)
T PRK08340          2 NVLVTASSRGIGFNVAREL-LKKGARVVISSRNEENLEKALKELKEYGEVYAVKADLSDKDDLKNLVKEAWELLGGIDAL   80 (259)
T ss_pred             eEEEEcCCcHHHHHHHHHH-HHcCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEcCCCCHHHHHHHHHHHHHhcCCCCEE
Confidence            6899999999999987777 4479999999998776654432    232122  233332344444443321 2368999


Q ss_pred             EECCCC
Q psy1959         237 FEAVGG  242 (296)
Q Consensus       237 ld~~g~  242 (296)
                      +++.|.
T Consensus        81 i~naG~   86 (259)
T PRK08340         81 VWNAGN   86 (259)
T ss_pred             EECCCC
Confidence            999884

>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional

Probab=96.27  E-value=0.041  Score=48.00  Aligned_cols=81  Identities=22%  Similarity=0.193  Sum_probs=51.5

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHH---hcCCcE---EEEcCCchhHHHHHHHHhC-CCcc
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIR---QKGAWA---ALTFTNEKSLVNKVLEVSG-GKYA  233 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~---~~g~~~---~~~~~~~~~~~~~i~~~~~-~~g~  233 (296)
                      ++++++|+|++|++|.++++.+ ...|++|+++++++...+...   +.+...   ..+..+..+..+.+.+... ...+
T Consensus         7 ~~k~vlVtGas~gIG~~la~~l-~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i   85 (260)
T PRK12823          7 AGKVVVVTGAAQGIGRGVALRA-AAEGARVVLVDRSELVHEVAAELRAAGGEALALTADLETYAGAQAAMAAAVEAFGRI   85 (260)
T ss_pred             CCCEEEEeCCCchHHHHHHHHH-HHCCCEEEEEeCchHHHHHHHHHHhcCCeEEEEEEeCCCHHHHHHHHHHHHHHcCCC
Confidence            4689999999999999988877 447999999998754333222   234332   1344442333333443321 2369


Q ss_pred             cEEEECCCC
Q psy1959         234 NVVFEAVGG  242 (296)
Q Consensus       234 d~vld~~g~  242 (296)
                      |+++.+.|.
T Consensus        86 d~lv~nAg~   94 (260)
T PRK12823         86 DVLINNVGG   94 (260)
T ss_pred             eEEEECCcc
Confidence            999999873

>PRK06482 short chain dehydrogenase; Provisional

Probab=96.27  E-value=0.03  Score=49.43  Aligned_cols=79  Identities=19%  Similarity=0.206  Sum_probs=52.7

Q ss_pred             cEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhc-CCcE---EEEcCCchhHHHHHHHHh-CCCcccEEE
Q psy1959         163 QTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQK-GAWA---ALTFTNEKSLVNKVLEVS-GGKYANVVF  237 (296)
Q Consensus       163 ~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~-g~~~---~~~~~~~~~~~~~i~~~~-~~~g~d~vl  237 (296)
                      ++++|+|++|++|...++.+ ...|.+|+++++++++.+.+++. +...   ..+..+.....+.+.+.. ...++|+++
T Consensus         3 k~vlVtGasg~IG~~la~~L-~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~vi   81 (276)
T PRK06482          3 KTWFITGASSGFGRGMTERL-LARGDRVAATVRRPDALDDLKARYGDRLWVLQLDVTDSAAVRAVVDRAFAALGRIDVVV   81 (276)
T ss_pred             CEEEEecCCCHHHHHHHHHH-HHCCCEEEEEeCCHHHHHHHHHhccCceEEEEccCCCHHHHHHHHHHHHHHcCCCCEEE
Confidence            57999999999999988777 44799999999988877766543 2221   133333233334443322 123689999


Q ss_pred             ECCCC
Q psy1959         238 EAVGG  242 (296)
Q Consensus       238 d~~g~  242 (296)
                      .+.|.
T Consensus        82 ~~ag~   86 (276)
T PRK06482         82 SNAGY   86 (276)
T ss_pred             ECCCC
Confidence            99874

>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional

Probab=96.26  E-value=0.027  Score=49.44  Aligned_cols=81  Identities=7%  Similarity=0.032  Sum_probs=50.3

Q ss_pred             CCcEEEEEcCC--CcHHHHHHHHHHHhCCCEEEEEeCCcchH---HHHH-hcCCcEE--EEcCCchhHHHHHHHHhC-CC
Q psy1959         161 EKQTVLVTAAG--GGLGLAAVDMATKIYKAKVIGVCNSEDKT---DLIR-QKGAWAA--LTFTNEKSLVNKVLEVSG-GK  231 (296)
Q Consensus       161 ~g~~vlI~Ga~--g~vG~aa~~la~~~~g~~Vi~~~~~~~~~---~~~~-~~g~~~~--~~~~~~~~~~~~i~~~~~-~~  231 (296)
                      +|++++|+|++  +++|.++++.+ ...|++|++++++++..   +.+. +++....  .+..+..+..+.+.+... -.
T Consensus         9 ~~k~~lItGas~g~GIG~a~a~~l-a~~G~~v~l~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g   87 (258)
T PRK07533          9 AGKRGLVVGIANEQSIAWGCARAF-RALGAELAVTYLNDKARPYVEPLAEELDAPIFLPLDVREPGQLEAVFARIAEEWG   87 (258)
T ss_pred             CCCEEEEECCCCCCcHHHHHHHHH-HHcCCEEEEEeCChhhHHHHHHHHHhhccceEEecCcCCHHHHHHHHHHHHHHcC
Confidence            57899999997  49999988777 44799999998875432   2222 3332222  233332334444433322 13


Q ss_pred             cccEEEECCCC
Q psy1959         232 YANVVFEAVGG  242 (296)
Q Consensus       232 g~d~vld~~g~  242 (296)
                      .+|+++++.|.
T Consensus        88 ~ld~lv~nAg~   98 (258)
T PRK07533         88 RLDFLLHSIAF   98 (258)
T ss_pred             CCCEEEEcCcc
Confidence            69999999874

>PRK06398 aldose dehydrogenase; Validated

Probab=96.25  E-value=0.017  Score=50.57  Aligned_cols=76  Identities=17%  Similarity=0.190  Sum_probs=50.0

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCc-EEEEcCCchhHHHHHHHHhC-CCcccEEEE
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAW-AALTFTNEKSLVNKVLEVSG-GKYANVVFE  238 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~i~~~~~-~~g~d~vld  238 (296)
                      .|++++|+|+++++|.+++..+ ...|++|+++++++++..     ... ...+..+..+..+.+.+... ...+|++++
T Consensus         5 ~gk~vlItGas~gIG~~ia~~l-~~~G~~Vi~~~r~~~~~~-----~~~~~~~D~~~~~~i~~~~~~~~~~~~~id~li~   78 (258)
T PRK06398          5 KDKVAIVTGGSQGIGKAVVNRL-KEEGSNVINFDIKEPSYN-----DVDYFKVDVSNKEQVIKGIDYVISKYGRIDILVN   78 (258)
T ss_pred             CCCEEEEECCCchHHHHHHHHH-HHCCCeEEEEeCCccccC-----ceEEEEccCCCHHHHHHHHHHHHHHcCCCCEEEE
Confidence            4689999999999999988887 457999999998765432     111 11233332344343433321 236999999


Q ss_pred             CCCC
Q psy1959         239 AVGG  242 (296)
Q Consensus       239 ~~g~  242 (296)
                      +.|.
T Consensus        79 ~Ag~   82 (258)
T PRK06398         79 NAGI   82 (258)
T ss_pred             CCCC
Confidence            8873

>PRK06181 short chain dehydrogenase; Provisional

Probab=96.25  E-value=0.023  Score=49.75  Aligned_cols=80  Identities=14%  Similarity=0.139  Sum_probs=52.1

Q ss_pred             CcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHH----hcCCcEE---EEcCCchhHHHHHHHHhC-CCcc
Q psy1959         162 KQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIR----QKGAWAA---LTFTNEKSLVNKVLEVSG-GKYA  233 (296)
Q Consensus       162 g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~----~~g~~~~---~~~~~~~~~~~~i~~~~~-~~g~  233 (296)
                      +.+++|+|++|++|..+++.+ ...|++|+.+++++++.+.+.    ..+....   .+..+...+.+.+.+... -.++
T Consensus         1 ~~~vlVtGasg~iG~~la~~l-~~~g~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~i   79 (263)
T PRK06181          1 GKVVIITGASEGIGRALAVRL-ARAGAQLVLAARNETRLASLAQELADHGGEALVVPTDVSDAEACERLIEAAVARFGGI   79 (263)
T ss_pred             CCEEEEecCCcHHHHHHHHHH-HHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence            357999999999999988887 457999999999876654332    2333222   223332333333443321 1368


Q ss_pred             cEEEECCCC
Q psy1959         234 NVVFEAVGG  242 (296)
Q Consensus       234 d~vld~~g~  242 (296)
                      |+++.+.|.
T Consensus        80 d~vi~~ag~   88 (263)
T PRK06181         80 DILVNNAGI   88 (263)
T ss_pred             CEEEECCCc
Confidence            999999874

>PRK12367 short chain dehydrogenase; Provisional

Probab=96.24  E-value=0.034  Score=48.58  Aligned_cols=74  Identities=19%  Similarity=0.166  Sum_probs=47.6

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcc-hHHHHHhcCCcEE--EEcCCchhHHHHHHHHhCCCcccEEE
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSED-KTDLIRQKGAWAA--LTFTNEKSLVNKVLEVSGGKYANVVF  237 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~-~~~~~~~~g~~~~--~~~~~~~~~~~~i~~~~~~~g~d~vl  237 (296)
                      .+++++|+|++|++|.+.++.+ ...|++|+++++++. +.+... .+....  .+..+ .   +.+.+..  ..+|+++
T Consensus        13 ~~k~~lITGas~gIG~ala~~l-~~~G~~Vi~~~r~~~~~~~~~~-~~~~~~~~~D~~~-~---~~~~~~~--~~iDilV   84 (245)
T PRK12367         13 QGKRIGITGASGALGKALTKAF-RAKGAKVIGLTHSKINNSESND-ESPNEWIKWECGK-E---ESLDKQL--ASLDVLI   84 (245)
T ss_pred             CCCEEEEEcCCcHHHHHHHHHH-HHCCCEEEEEECCchhhhhhhc-cCCCeEEEeeCCC-H---HHHHHhc--CCCCEEE
Confidence            4689999999999999988877 457999999988762 222211 121122  23333 1   2233333  2699999


Q ss_pred             ECCCC
Q psy1959         238 EAVGG  242 (296)
Q Consensus       238 d~~g~  242 (296)
                      ++.|.
T Consensus        85 nnAG~   89 (245)
T PRK12367         85 LNHGI   89 (245)
T ss_pred             ECCcc
Confidence            99984

>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=96.24  E-value=0.085  Score=44.80  Aligned_cols=110  Identities=14%  Similarity=0.102  Sum_probs=74.6

Q ss_pred             hccHHHHHHHHHHHHcCCCCCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHH----HhcCCcEE-EEcCC
Q psy1959         142 LADSYSTAQIVFSRHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLI----RQKGAWAA-LTFTN  216 (296)
Q Consensus       142 l~~~~~ta~~~l~~~~~~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~----~~~g~~~~-~~~~~  216 (296)
                      +..+...|.- + +...+++|++||=+|  +|.|+.++-+| ++.+ +|+.+.+.++-.+.+    +.+|...+ +...+
T Consensus        55 is~P~~vA~m-~-~~L~~~~g~~VLEIG--tGsGY~aAvla-~l~~-~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~gD  128 (209)
T COG2518          55 ISAPHMVARM-L-QLLELKPGDRVLEIG--TGSGYQAAVLA-RLVG-RVVSIERIEELAEQARRNLETLGYENVTVRHGD  128 (209)
T ss_pred             ecCcHHHHHH-H-HHhCCCCCCeEEEEC--CCchHHHHHHH-HHhC-eEEEEEEcHHHHHHHHHHHHHcCCCceEEEECC
Confidence            3344445542 2 778899999999998  56699999999 5444 999999888754444    55676433 22222


Q ss_pred             chhHHHHHHHHhCCCcccEEEECCCC-ccHHHHHHHhhccCceEEeecc
Q psy1959         217 EKSLVNKVLEVSGGKYANVVFEAVGG-EDKTDLIRQKGAWAALTFTNEK  264 (296)
Q Consensus       217 ~~~~~~~i~~~~~~~g~d~vld~~g~-~~~~~~~~~lg~~~g~~~~~~~  264 (296)
                         -   ...+.....+|.++-+.+- +.-...+++| +.+|+..++..
T Consensus       129 ---G---~~G~~~~aPyD~I~Vtaaa~~vP~~Ll~QL-~~gGrlv~PvG  170 (209)
T COG2518         129 ---G---SKGWPEEAPYDRIIVTAAAPEVPEALLDQL-KPGGRLVIPVG  170 (209)
T ss_pred             ---c---ccCCCCCCCcCEEEEeeccCCCCHHHHHhc-ccCCEEEEEEc
Confidence               0   1111122468988887776 5668899999 99999977765

>PRK06172 short chain dehydrogenase; Provisional

Probab=96.24  E-value=0.025  Score=49.20  Aligned_cols=81  Identities=20%  Similarity=0.145  Sum_probs=51.7

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHH----HhcCCcEE---EEcCCchhHHHHHHHHhC-CCc
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLI----RQKGAWAA---LTFTNEKSLVNKVLEVSG-GKY  232 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~----~~~g~~~~---~~~~~~~~~~~~i~~~~~-~~g  232 (296)
                      ++++++|.|++|++|..+++.+ ...|++|+.+++++++.+.+    ++.+....   .+..+..+..+.+.+... ...
T Consensus         6 ~~k~ilItGas~~iG~~ia~~l-~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~~g~   84 (253)
T PRK06172          6 SGKVALVTGGAAGIGRATALAF-AREGAKVVVADRDAAGGEETVALIREAGGEALFVACDVTRDAEVKALVEQTIAAYGR   84 (253)
T ss_pred             CCCEEEEeCCCchHHHHHHHHH-HHcCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHhCC
Confidence            4689999999999999988777 34699999999987765433    23333221   223332233333333211 126


Q ss_pred             ccEEEECCCC
Q psy1959         233 ANVVFEAVGG  242 (296)
Q Consensus       233 ~d~vld~~g~  242 (296)
                      +|+++.+.|.
T Consensus        85 id~li~~ag~   94 (253)
T PRK06172         85 LDYAFNNAGI   94 (253)
T ss_pred             CCEEEECCCC
Confidence            8999999884

>PRK06114 short chain dehydrogenase; Provisional

Probab=96.22  E-value=0.033  Score=48.57  Aligned_cols=81  Identities=22%  Similarity=0.145  Sum_probs=51.4

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcch-HH----HHHhcCCcEE---EEcCCchhHHHHHHHHhC-CC
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDK-TD----LIRQKGAWAA---LTFTNEKSLVNKVLEVSG-GK  231 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~-~~----~~~~~g~~~~---~~~~~~~~~~~~i~~~~~-~~  231 (296)
                      ++++++|+|+++++|.++++.+ ...|++|+++++++++ .+    .++..+....   .+..+..+..+.+.+... ..
T Consensus         7 ~~k~~lVtG~s~gIG~~ia~~l-~~~G~~v~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~~g   85 (254)
T PRK06114          7 DGQVAFVTGAGSGIGQRIAIGL-AQAGADVALFDLRTDDGLAETAEHIEAAGRRAIQIAADVTSKADLRAAVARTEAELG   85 (254)
T ss_pred             CCCEEEEECCCchHHHHHHHHH-HHCCCEEEEEeCCcchHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence            5789999999999999988877 4579999999986542 22    2233343221   233332333333333321 23


Q ss_pred             cccEEEECCCC
Q psy1959         232 YANVVFEAVGG  242 (296)
Q Consensus       232 g~d~vld~~g~  242 (296)
                      .+|+++.+.|.
T Consensus        86 ~id~li~~ag~   96 (254)
T PRK06114         86 ALTLAVNAAGI   96 (254)
T ss_pred             CCCEEEECCCC
Confidence            68999999984

>PRK07832 short chain dehydrogenase; Provisional

Probab=96.22  E-value=0.036  Score=48.90  Aligned_cols=78  Identities=19%  Similarity=0.190  Sum_probs=50.5

Q ss_pred             EEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHH----HhcCCcE----EEEcCCchhHHHHHHHHh-CCCccc
Q psy1959         164 TVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLI----RQKGAWA----ALTFTNEKSLVNKVLEVS-GGKYAN  234 (296)
Q Consensus       164 ~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~----~~~g~~~----~~~~~~~~~~~~~i~~~~-~~~g~d  234 (296)
                      +++|+|++|++|..+++.+ ...|++|+++++++++.+.+    +..+...    ..+..+..+..+.+.+.. ....+|
T Consensus         2 ~vlItGas~giG~~la~~l-a~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id   80 (272)
T PRK07832          2 RCFVTGAASGIGRATALRL-AAQGAELFLTDRDADGLAQTVADARALGGTVPEHRALDISDYDAVAAFAADIHAAHGSMD   80 (272)
T ss_pred             EEEEeCCCCHHHHHHHHHH-HHCCCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEeeCCCHHHHHHHHHHHHHhcCCCC
Confidence            6899999999999988877 45799999999877765433    2233321    234444233333333321 123689


Q ss_pred             EEEECCCC
Q psy1959         235 VVFEAVGG  242 (296)
Q Consensus       235 ~vld~~g~  242 (296)
                      +++++.|.
T Consensus        81 ~lv~~ag~   88 (272)
T PRK07832         81 VVMNIAGI   88 (272)
T ss_pred             EEEECCCC
Confidence            99999984

>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases

Probab=96.17  E-value=0.026  Score=45.62  Aligned_cols=79  Identities=23%  Similarity=0.274  Sum_probs=48.4

Q ss_pred             cEEEEEcCCCcHHHHHHHHHHHhCCC-EEEEEeCC--cchHHHH----HhcCCcEEE---EcCCchhHHHHHHHHh-CCC
Q psy1959         163 QTVLVTAAGGGLGLAAVDMATKIYKA-KVIGVCNS--EDKTDLI----RQKGAWAAL---TFTNEKSLVNKVLEVS-GGK  231 (296)
Q Consensus       163 ~~vlI~Ga~g~vG~aa~~la~~~~g~-~Vi~~~~~--~~~~~~~----~~~g~~~~~---~~~~~~~~~~~i~~~~-~~~  231 (296)
                      ++++|+|+++++|.+.++.+.+ .|+ +|+.+.++  .++.+.+    ++.+....+   +..+..+....+.+.. ...
T Consensus         1 k~~lItGa~~giG~~~a~~l~~-~g~~~v~~~~r~~~~~~~~~l~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~   79 (167)
T PF00106_consen    1 KTVLITGASSGIGRALARALAR-RGARVVILTSRSEDSEGAQELIQELKAPGAKITFIECDLSDPESIRALIEEVIKRFG   79 (167)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHH-TTTEEEEEEESSCHHHHHHHHHHHHHHTTSEEEEEESETTSHHHHHHHHHHHHHHHS
T ss_pred             CEEEEECCCCHHHHHHHHHHHh-cCceEEEEeeecccccccccccccccccccccccccccccccccccccccccccccc
Confidence            4789999999999997777734 455 77777777  3443333    334533222   2233233344444332 223


Q ss_pred             cccEEEECCCC
Q psy1959         232 YANVVFEAVGG  242 (296)
Q Consensus       232 g~d~vld~~g~  242 (296)
                      .+|++|.+.|.
T Consensus        80 ~ld~li~~ag~   90 (167)
T PF00106_consen   80 PLDILINNAGI   90 (167)
T ss_dssp             SESEEEEECSC
T ss_pred             ccccccccccc
Confidence            69999999985

As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....

>PRK08415 enoyl-(acyl carrier protein) reductase; Provisional

Probab=96.16  E-value=0.039  Score=49.05  Aligned_cols=81  Identities=9%  Similarity=0.046  Sum_probs=51.8

Q ss_pred             CCcEEEEEcCC--CcHHHHHHHHHHHhCCCEEEEEeCCcc---hHHHH-HhcCCcE--EEEcCCchhHHHHHHHHhC-CC
Q psy1959         161 EKQTVLVTAAG--GGLGLAAVDMATKIYKAKVIGVCNSED---KTDLI-RQKGAWA--ALTFTNEKSLVNKVLEVSG-GK  231 (296)
Q Consensus       161 ~g~~vlI~Ga~--g~vG~aa~~la~~~~g~~Vi~~~~~~~---~~~~~-~~~g~~~--~~~~~~~~~~~~~i~~~~~-~~  231 (296)
                      .+++++|+|++  +++|+++++.+ ...|++|++.+++++   +.+.+ ++++...  ..+..+..+..+.+.+... ..
T Consensus         4 ~~k~~lItGas~~~GIG~aiA~~l-a~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~i~~~~g   82 (274)
T PRK08415          4 KGKKGLIVGVANNKSIAYGIAKAC-FEQGAELAFTYLNEALKKRVEPIAQELGSDYVYELDVSKPEHFKSLAESLKKDLG   82 (274)
T ss_pred             CCcEEEEECCCCCCCHHHHHHHHH-HHCCCEEEEEecCHHHHHHHHHHHHhcCCceEEEecCCCHHHHHHHHHHHHHHcC
Confidence            47899999996  79999988777 447999999888743   33333 3344322  2344443344444444322 23


Q ss_pred             cccEEEECCCC
Q psy1959         232 YANVVFEAVGG  242 (296)
Q Consensus       232 g~d~vld~~g~  242 (296)
                      .+|+++++.|.
T Consensus        83 ~iDilVnnAG~   93 (274)
T PRK08415         83 KIDFIVHSVAF   93 (274)
T ss_pred             CCCEEEECCcc
Confidence            68999999984

>PRK06603 enoyl-(acyl carrier protein) reductase; Provisional

Probab=96.15  E-value=0.035  Score=48.74  Aligned_cols=81  Identities=19%  Similarity=0.157  Sum_probs=49.9

Q ss_pred             CCcEEEEEcCCC--cHHHHHHHHHHHhCCCEEEEEeCCcc---hHHHHH-hcCCcEE--EEcCCchhHHHHHHHHhC-CC
Q psy1959         161 EKQTVLVTAAGG--GLGLAAVDMATKIYKAKVIGVCNSED---KTDLIR-QKGAWAA--LTFTNEKSLVNKVLEVSG-GK  231 (296)
Q Consensus       161 ~g~~vlI~Ga~g--~vG~aa~~la~~~~g~~Vi~~~~~~~---~~~~~~-~~g~~~~--~~~~~~~~~~~~i~~~~~-~~  231 (296)
                      .|+.++|+|+++  ++|.++++.+ ...|++|+..+++++   ..+.+. +.+....  .+..+..+..+.+.+... -.
T Consensus         7 ~~k~~lITGas~~~GIG~a~a~~l-a~~G~~v~~~~r~~~~~~~~~~l~~~~g~~~~~~~Dv~~~~~v~~~~~~~~~~~g   85 (260)
T PRK06603          7 QGKKGLITGIANNMSISWAIAQLA-KKHGAELWFTYQSEVLEKRVKPLAEEIGCNFVSELDVTNPKSISNLFDDIKEKWG   85 (260)
T ss_pred             CCcEEEEECCCCCcchHHHHHHHH-HHcCCEEEEEeCchHHHHHHHHHHHhcCCceEEEccCCCHHHHHHHHHHHHHHcC
Confidence            578999999986  8999987666 347999998887642   223332 2243222  344443344444443322 13


Q ss_pred             cccEEEECCCC
Q psy1959         232 YANVVFEAVGG  242 (296)
Q Consensus       232 g~d~vld~~g~  242 (296)
                      .+|+++++.|.
T Consensus        86 ~iDilVnnag~   96 (260)
T PRK06603         86 SFDFLLHGMAF   96 (260)
T ss_pred             CccEEEEcccc
Confidence            69999998873

>PRK08643 acetoin reductase; Validated

Probab=96.15  E-value=0.027  Score=49.00  Aligned_cols=80  Identities=25%  Similarity=0.224  Sum_probs=52.1

Q ss_pred             CcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHh----cCCcEE---EEcCCchhHHHHHHHHh-CCCcc
Q psy1959         162 KQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQ----KGAWAA---LTFTNEKSLVNKVLEVS-GGKYA  233 (296)
Q Consensus       162 g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~----~g~~~~---~~~~~~~~~~~~i~~~~-~~~g~  233 (296)
                      +++++|+|++|++|...++.+ ...|++|+.+++++++.+.+..    .+....   .+..+.....+.+.+.. ...++
T Consensus         2 ~k~~lItGas~giG~~la~~l-~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~i   80 (256)
T PRK08643          2 SKVALVTGAGQGIGFAIAKRL-VEDGFKVAIVDYNEETAQAAADKLSKDGGKAIAVKADVSDRDQVFAAVRQVVDTFGDL   80 (256)
T ss_pred             CCEEEEECCCChHHHHHHHHH-HHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHcCCC
Confidence            568999999999999988888 4579999999988776544432    232221   23333233333333332 12368


Q ss_pred             cEEEECCCC
Q psy1959         234 NVVFEAVGG  242 (296)
Q Consensus       234 d~vld~~g~  242 (296)
                      |+++.+.|.
T Consensus        81 d~vi~~ag~   89 (256)
T PRK08643         81 NVVVNNAGV   89 (256)
T ss_pred             CEEEECCCC
Confidence            999999874

>PRK09242 tropinone reductase; Provisional

Probab=96.15  E-value=0.021  Score=49.80  Aligned_cols=81  Identities=21%  Similarity=0.190  Sum_probs=53.0

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHh----c--CCcEE---EEcCCchhHHHHHHHHh-CC
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQ----K--GAWAA---LTFTNEKSLVNKVLEVS-GG  230 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~----~--g~~~~---~~~~~~~~~~~~i~~~~-~~  230 (296)
                      .+++++|+|++|++|..+++.+ ...|++|++++++.++.+.+.+    .  +....   .+..+..+..+.+.+.. .-
T Consensus         8 ~~k~~lItGa~~gIG~~~a~~l-~~~G~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~   86 (257)
T PRK09242          8 DGQTALITGASKGIGLAIAREF-LGLGADVLIVARDADALAQARDELAEEFPEREVHGLAADVSDDEDRRAILDWVEDHW   86 (257)
T ss_pred             CCCEEEEeCCCchHHHHHHHHH-HHcCCEEEEEeCCHHHHHHHHHHHHhhCCCCeEEEEECCCCCHHHHHHHHHHHHHHc
Confidence            4789999999999999988887 4579999999998876654432    1  22221   23333233333333322 12


Q ss_pred             CcccEEEECCCC
Q psy1959         231 KYANVVFEAVGG  242 (296)
Q Consensus       231 ~g~d~vld~~g~  242 (296)
                      ..+|+++.+.|.
T Consensus        87 g~id~li~~ag~   98 (257)
T PRK09242         87 DGLHILVNNAGG   98 (257)
T ss_pred             CCCCEEEECCCC
Confidence            369999999985

>PRK07856 short chain dehydrogenase; Provisional

Probab=96.15  E-value=0.02  Score=49.85  Aligned_cols=77  Identities=18%  Similarity=0.171  Sum_probs=50.0

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCcE-E--EEcCCchhHHHHHHHHhC-CCcccEE
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWA-A--LTFTNEKSLVNKVLEVSG-GKYANVV  236 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~~-~--~~~~~~~~~~~~i~~~~~-~~g~d~v  236 (296)
                      .+++++|+|++|++|.+.++.+ ...|++|+++++++++    ...+... .  .+..+..+..+.+.+... ...+|++
T Consensus         5 ~~k~~lItGas~gIG~~la~~l-~~~g~~v~~~~r~~~~----~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~v   79 (252)
T PRK07856          5 TGRVVLVTGGTRGIGAGIARAF-LAAGATVVVCGRRAPE----TVDGRPAEFHAADVRDPDQVAALVDAIVERHGRLDVL   79 (252)
T ss_pred             CCCEEEEeCCCchHHHHHHHHH-HHCCCEEEEEeCChhh----hhcCCceEEEEccCCCHHHHHHHHHHHHHHcCCCCEE
Confidence            5789999999999999988877 4479999999987655    1122211 1  233332334333333321 1368999


Q ss_pred             EECCCC
Q psy1959         237 FEAVGG  242 (296)
Q Consensus       237 ld~~g~  242 (296)
                      |.+.|.
T Consensus        80 i~~ag~   85 (252)
T PRK07856         80 VNNAGG   85 (252)
T ss_pred             EECCCC
Confidence            999874

>PRK08263 short chain dehydrogenase; Provisional

Probab=96.15  E-value=0.024  Score=50.07  Aligned_cols=80  Identities=18%  Similarity=0.197  Sum_probs=52.6

Q ss_pred             CcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhc-CCcE-E--EEcCCchhHHHHHHHHhC-CCcccEE
Q psy1959         162 KQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQK-GAWA-A--LTFTNEKSLVNKVLEVSG-GKYANVV  236 (296)
Q Consensus       162 g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~-g~~~-~--~~~~~~~~~~~~i~~~~~-~~g~d~v  236 (296)
                      +.+++|+|++|++|..+++.+ ...|++|++++++.++.+.+.+. +... .  .+..+..+..+.+.+... -.++|++
T Consensus         3 ~k~vlItGasg~iG~~~a~~l-~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~d~v   81 (275)
T PRK08263          3 EKVWFITGASRGFGRAWTEAA-LERGDRVVATARDTATLADLAEKYGDRLLPLALDVTDRAAVFAAVETAVEHFGRLDIV   81 (275)
T ss_pred             CCEEEEeCCCChHHHHHHHHH-HHCCCEEEEEECCHHHHHHHHHhccCCeeEEEccCCCHHHHHHHHHHHHHHcCCCCEE
Confidence            468999999999999988877 44699999999988877665543 2211 1  233332333333333211 1368999


Q ss_pred             EECCCC
Q psy1959         237 FEAVGG  242 (296)
Q Consensus       237 ld~~g~  242 (296)
                      +.+.|.
T Consensus        82 i~~ag~   87 (275)
T PRK08263         82 VNNAGY   87 (275)
T ss_pred             EECCCC
Confidence            999985

>PRK06198 short chain dehydrogenase; Provisional

Probab=96.14  E-value=0.028  Score=49.05  Aligned_cols=81  Identities=19%  Similarity=0.156  Sum_probs=51.9

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCE-EEEEeCCcchHH----HHHhcCCcEE---EEcCCchhHHHHHHHHhC-CC
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAK-VIGVCNSEDKTD----LIRQKGAWAA---LTFTNEKSLVNKVLEVSG-GK  231 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~-Vi~~~~~~~~~~----~~~~~g~~~~---~~~~~~~~~~~~i~~~~~-~~  231 (296)
                      .+++++|.|++|++|..+++.+ ...|++ |++++++.++..    .+++.+....   .+..+...+.+.+..... -.
T Consensus         5 ~~k~vlItGa~g~iG~~la~~l-~~~G~~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g   83 (260)
T PRK06198          5 DGKVALVTGGTQGLGAAIARAF-AERGAAGLVICGRNAEKGEAQAAELEALGAKAVFVQADLSDVEDCRRVVAAADEAFG   83 (260)
T ss_pred             CCcEEEEeCCCchHHHHHHHHH-HHCCCCeEEEEcCCHHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHHHhC
Confidence            5688999999999999988888 457998 999998766554    2233343221   233332333333332211 12


Q ss_pred             cccEEEECCCC
Q psy1959         232 YANVVFEAVGG  242 (296)
Q Consensus       232 g~d~vld~~g~  242 (296)
                      ++|+++.+.|.
T Consensus        84 ~id~li~~ag~   94 (260)
T PRK06198         84 RLDALVNAAGL   94 (260)
T ss_pred             CCCEEEECCCc
Confidence            69999999984

>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]

Probab=96.13  E-value=0.031  Score=52.04  Aligned_cols=82  Identities=16%  Similarity=0.133  Sum_probs=56.9

Q ss_pred             cEEEEEcCCCcHHHHHHHHHHHhCC-CEEEEEeCCcchHHHHHhcC---Cc-EEEEcCCchhHHHHHHHHhCCCcccEEE
Q psy1959         163 QTVLVTAAGGGLGLAAVDMATKIYK-AKVIGVCNSEDKTDLIRQKG---AW-AALTFTNEKSLVNKVLEVSGGKYANVVF  237 (296)
Q Consensus       163 ~~vlI~Ga~g~vG~aa~~la~~~~g-~~Vi~~~~~~~~~~~~~~~g---~~-~~~~~~~~~~~~~~i~~~~~~~g~d~vl  237 (296)
                      .+|+|+|+ |.+|+.+++.+ ...+ .+|++++++.++.+.+.+..   .. ..++..+    .+.+.++..  +.|+||
T Consensus         2 ~~ilviGa-G~Vg~~va~~l-a~~~d~~V~iAdRs~~~~~~i~~~~~~~v~~~~vD~~d----~~al~~li~--~~d~VI   73 (389)
T COG1748           2 MKILVIGA-GGVGSVVAHKL-AQNGDGEVTIADRSKEKCARIAELIGGKVEALQVDAAD----VDALVALIK--DFDLVI   73 (389)
T ss_pred             CcEEEECC-chhHHHHHHHH-HhCCCceEEEEeCCHHHHHHHHhhccccceeEEecccC----hHHHHHHHh--cCCEEE
Confidence            47899998 99999999987 3456 79999999999999987764   22 2244444    223333332  459999


Q ss_pred             ECCCCccHHHHHHHh
Q psy1959         238 EAVGGEDKTDLIRQK  252 (296)
Q Consensus       238 d~~g~~~~~~~~~~l  252 (296)
                      ++.....-..+++..
T Consensus        74 n~~p~~~~~~i~ka~   88 (389)
T COG1748          74 NAAPPFVDLTILKAC   88 (389)
T ss_pred             EeCCchhhHHHHHHH
Confidence            999985434555444

>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase

Probab=96.13  E-value=0.16  Score=42.55  Aligned_cols=76  Identities=20%  Similarity=0.161  Sum_probs=50.1

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHh-c----CCcEE-EEcCCchhHHHHHHHHhCCCccc
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQ-K----GAWAA-LTFTNEKSLVNKVLEVSGGKYAN  234 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~-~----g~~~~-~~~~~~~~~~~~i~~~~~~~g~d  234 (296)
                      ++.+++|.|++|++|+.++..+ ...|++|+++.++.++.+.+.+ +    +.... .+..+   . +.+.+..  .++|
T Consensus        27 ~~~~vlVlGgtG~iG~~~a~~l-~~~g~~V~l~~R~~~~~~~l~~~l~~~~~~~~~~~~~~~---~-~~~~~~~--~~~d   99 (194)
T cd01078          27 KGKTAVVLGGTGPVGQRAAVLL-AREGARVVLVGRDLERAQKAADSLRARFGEGVGAVETSD---D-AARAAAI--KGAD   99 (194)
T ss_pred             CCCEEEEECCCCHHHHHHHHHH-HHCCCEEEEEcCCHHHHHHHHHHHHhhcCCcEEEeeCCC---H-HHHHHHH--hcCC
Confidence            6789999999999999887777 3468899999998877665543 2    22211 12222   1 1222222  3689


Q ss_pred             EEEECCCCc
Q psy1959         235 VVFEAVGGE  243 (296)
Q Consensus       235 ~vld~~g~~  243 (296)
                      ++|.+....
T Consensus       100 iVi~at~~g  108 (194)
T cd01078         100 VVFAAGAAG  108 (194)
T ss_pred             EEEECCCCC
Confidence            999988763

Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo

>PRK06197 short chain dehydrogenase; Provisional

Probab=96.13  E-value=0.024  Score=51.05  Aligned_cols=81  Identities=20%  Similarity=0.177  Sum_probs=51.6

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHH----Hh-c-CCcE-E--EEcCCchhHHHHHHHHhC-C
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLI----RQ-K-GAWA-A--LTFTNEKSLVNKVLEVSG-G  230 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~----~~-~-g~~~-~--~~~~~~~~~~~~i~~~~~-~  230 (296)
                      .+++++|+|++|++|.++++.+ ...|++|++++++.++.+.+    .+ . +... .  .+..+..+..+.+.++.. .
T Consensus        15 ~~k~vlItGas~gIG~~~a~~l-~~~G~~vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~~   93 (306)
T PRK06197         15 SGRVAVVTGANTGLGYETAAAL-AAKGAHVVLAVRNLDKGKAAAARITAATPGADVTLQELDLTSLASVRAAADALRAAY   93 (306)
T ss_pred             CCCEEEEcCCCCcHHHHHHHHH-HHCCCEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEECCCCCHHHHHHHHHHHHhhC
Confidence            5789999999999999988766 34699999999887765432    21 1 1211 1  233332333333333321 2


Q ss_pred             CcccEEEECCCC
Q psy1959         231 KYANVVFEAVGG  242 (296)
Q Consensus       231 ~g~d~vld~~g~  242 (296)
                      ..+|+++.+.|.
T Consensus        94 ~~iD~li~nAg~  105 (306)
T PRK06197         94 PRIDLLINNAGV  105 (306)
T ss_pred             CCCCEEEECCcc
Confidence            369999999873

>PRK07791 short chain dehydrogenase; Provisional

Probab=96.12  E-value=0.039  Score=49.27  Aligned_cols=82  Identities=21%  Similarity=0.128  Sum_probs=51.3

Q ss_pred             CCCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCc---------chHHHH----HhcCCcEE---EEcCCchhHHHH
Q psy1959         160 KEKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSE---------DKTDLI----RQKGAWAA---LTFTNEKSLVNK  223 (296)
Q Consensus       160 ~~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~---------~~~~~~----~~~g~~~~---~~~~~~~~~~~~  223 (296)
                      -++++++|+|+++++|.+.++.+ ...|++|++++++.         ++.+.+    ++.+....   .+..+..+..+.
T Consensus         4 l~~k~~lITGas~GIG~aia~~l-a~~G~~vii~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dv~~~~~v~~~   82 (286)
T PRK07791          4 LDGRVVIVTGAGGGIGRAHALAF-AAEGARVVVNDIGVGLDGSASGGSAAQAVVDEIVAAGGEAVANGDDIADWDGAANL   82 (286)
T ss_pred             cCCCEEEEECCCchHHHHHHHHH-HHCCCEEEEeeCCccccccccchhHHHHHHHHHHhcCCceEEEeCCCCCHHHHHHH
Confidence            36789999999999999988776 44799999887654         333322    22233222   233332333444


Q ss_pred             HHHHhC-CCcccEEEECCCC
Q psy1959         224 VLEVSG-GKYANVVFEAVGG  242 (296)
Q Consensus       224 i~~~~~-~~g~d~vld~~g~  242 (296)
                      +.+... ...+|+++++.|.
T Consensus        83 ~~~~~~~~g~id~lv~nAG~  102 (286)
T PRK07791         83 VDAAVETFGGLDVLVNNAGI  102 (286)
T ss_pred             HHHHHHhcCCCCEEEECCCC
Confidence            433321 1369999999884

>PRK07074 short chain dehydrogenase; Provisional

Probab=96.12  E-value=0.037  Score=48.17  Aligned_cols=80  Identities=23%  Similarity=0.255  Sum_probs=51.8

Q ss_pred             CcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHh-cC---CcE-EEEcCCchhHHHHHHHHhC-CCcccE
Q psy1959         162 KQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQ-KG---AWA-ALTFTNEKSLVNKVLEVSG-GKYANV  235 (296)
Q Consensus       162 g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~-~g---~~~-~~~~~~~~~~~~~i~~~~~-~~g~d~  235 (296)
                      +++++|+|++|++|...+..+ ...|++|++++++.++.+.+.+ ..   +.. ..+..+..+....+.+... ..++|+
T Consensus         2 ~k~ilItGat~~iG~~la~~L-~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~d~   80 (257)
T PRK07074          2 KRTALVTGAAGGIGQALARRF-LAAGDRVLALDIDAAALAAFADALGDARFVPVACDLTDAASLAAALANAAAERGPVDV   80 (257)
T ss_pred             CCEEEEECCcchHHHHHHHHH-HHCCCEEEEEeCCHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHHcCCCCE
Confidence            468999999999999988777 3479999999998777654433 21   111 1333332333333433321 136899


Q ss_pred             EEECCCC
Q psy1959         236 VFEAVGG  242 (296)
Q Consensus       236 vld~~g~  242 (296)
                      ++.+.|.
T Consensus        81 vi~~ag~   87 (257)
T PRK07074         81 LVANAGA   87 (257)
T ss_pred             EEECCCC
Confidence            9999985

>PRK06101 short chain dehydrogenase; Provisional

Probab=96.11  E-value=0.028  Score=48.66  Aligned_cols=76  Identities=17%  Similarity=0.138  Sum_probs=50.1

Q ss_pred             cEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCc-E--EEEcCCchhHHHHHHHHhCCCcccEEEEC
Q psy1959         163 QTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAW-A--ALTFTNEKSLVNKVLEVSGGKYANVVFEA  239 (296)
Q Consensus       163 ~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~-~--~~~~~~~~~~~~~i~~~~~~~g~d~vld~  239 (296)
                      .+++|+|++|++|...+..+ ...|++|+++++++++.+.+.+.+.. .  ..+..+..+..+.+.+..  ...|.++.+
T Consensus         2 ~~vlItGas~giG~~la~~L-~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~--~~~d~~i~~   78 (240)
T PRK06101          2 TAVLITGATSGIGKQLALDY-AKQGWQVIACGRNQSVLDELHTQSANIFTLAFDVTDHPGTKAALSQLP--FIPELWIFN   78 (240)
T ss_pred             cEEEEEcCCcHHHHHHHHHH-HhCCCEEEEEECCHHHHHHHHHhcCCCeEEEeeCCCHHHHHHHHHhcc--cCCCEEEEc
Confidence            57899999999999877666 34799999999998887777654321 1  234444234444443332  246777776


Q ss_pred             CC
Q psy1959         240 VG  241 (296)
Q Consensus       240 ~g  241 (296)
                      .|
T Consensus        79 ag   80 (240)
T PRK06101         79 AG   80 (240)
T ss_pred             Cc
Confidence            65

>PRK08251 short chain dehydrogenase; Provisional

Probab=96.07  E-value=0.043  Score=47.45  Aligned_cols=80  Identities=18%  Similarity=0.210  Sum_probs=51.5

Q ss_pred             CcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHh----c--CCcEE---EEcCCchhHHHHHHHHhC-CC
Q psy1959         162 KQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQ----K--GAWAA---LTFTNEKSLVNKVLEVSG-GK  231 (296)
Q Consensus       162 g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~----~--g~~~~---~~~~~~~~~~~~i~~~~~-~~  231 (296)
                      +++++|+|++|++|...++.+ ...|++|+++++++++.+.+.+    .  +....   .+..+..+..+.+.+... -.
T Consensus         2 ~k~vlItGas~giG~~la~~l-~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~   80 (248)
T PRK08251          2 RQKILITGASSGLGAGMAREF-AAKGRDLALCARRTDRLEELKAELLARYPGIKVAVAALDVNDHDQVFEVFAEFRDELG   80 (248)
T ss_pred             CCEEEEECCCCHHHHHHHHHH-HHcCCEEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence            468999999999999877766 3468999999998877654432    1  22211   233332344444443321 23


Q ss_pred             cccEEEECCCC
Q psy1959         232 YANVVFEAVGG  242 (296)
Q Consensus       232 g~d~vld~~g~  242 (296)
                      ++|+++.+.|.
T Consensus        81 ~id~vi~~ag~   91 (248)
T PRK08251         81 GLDRVIVNAGI   91 (248)
T ss_pred             CCCEEEECCCc
Confidence            68999999873

>PRK07067 sorbitol dehydrogenase; Provisional

Probab=96.06  E-value=0.029  Score=48.93  Aligned_cols=81  Identities=20%  Similarity=0.163  Sum_probs=53.4

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHh-cCCcEE---EEcCCchhHHHHHHHHhC-CCcccE
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQ-KGAWAA---LTFTNEKSLVNKVLEVSG-GKYANV  235 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~-~g~~~~---~~~~~~~~~~~~i~~~~~-~~g~d~  235 (296)
                      .+++++|+|++|++|..+++.+ ...|++|+.++++.++.+.+.+ .+....   .+..+..+....+.+... ...+|+
T Consensus         5 ~~~~vlItGas~~iG~~ia~~l-~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~   83 (257)
T PRK07067          5 QGKVALLTGAASGIGEAVAERY-LAEGARVVIADIKPARARLAALEIGPAAIAVSLDVTRQDSIDRIVAAAVERFGGIDI   83 (257)
T ss_pred             CCCEEEEeCCCchHHHHHHHHH-HHcCCEEEEEcCCHHHHHHHHHHhCCceEEEEccCCCHHHHHHHHHHHHHHcCCCCE
Confidence            4678999999999999988888 4579999999998887765543 332211   223332333333333211 136899


Q ss_pred             EEECCCC
Q psy1959         236 VFEAVGG  242 (296)
Q Consensus       236 vld~~g~  242 (296)
                      ++.+.|.
T Consensus        84 li~~ag~   90 (257)
T PRK07067         84 LFNNAAL   90 (257)
T ss_pred             EEECCCc
Confidence            9998874

>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional

Probab=96.06  E-value=0.033  Score=48.56  Aligned_cols=80  Identities=18%  Similarity=0.072  Sum_probs=50.6

Q ss_pred             CcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHh-----cCCcE--E--EEcCCchhHHHHHHHHhC-CC
Q psy1959         162 KQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQ-----KGAWA--A--LTFTNEKSLVNKVLEVSG-GK  231 (296)
Q Consensus       162 g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~-----~g~~~--~--~~~~~~~~~~~~i~~~~~-~~  231 (296)
                      +++++|+|++|++|.+.+..+ ...|++|+.++++..+.+.+.+     .+...  .  .+..+..+....+.++.. -.
T Consensus         2 ~k~ilItG~~~~IG~~la~~l-~~~g~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~~~   80 (259)
T PRK12384          2 NQVAVVIGGGQTLGAFLCHGL-AEEGYRVAVADINSEKAANVAQEINAEYGEGMAYGFGADATSEQSVLALSRGVDEIFG   80 (259)
T ss_pred             CCEEEEECCCcHHHHHHHHHH-HHCCCEEEEEECCHHHHHHHHHHHHHhcCCceeEEEEccCCCHHHHHHHHHHHHHHcC
Confidence            468999999999999988877 4579999999988776544322     12111  1  233332333333333321 13


Q ss_pred             cccEEEECCCC
Q psy1959         232 YANVVFEAVGG  242 (296)
Q Consensus       232 g~d~vld~~g~  242 (296)
                      .+|+++.+.|.
T Consensus        81 ~id~vv~~ag~   91 (259)
T PRK12384         81 RVDLLVYNAGI   91 (259)
T ss_pred             CCCEEEECCCc
Confidence            68999999873

>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed

Probab=96.05  E-value=0.033  Score=48.09  Aligned_cols=81  Identities=22%  Similarity=0.158  Sum_probs=51.1

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHH----HhcCCcEE---EEcCCchhHHHHHHHHhC-CCc
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLI----RQKGAWAA---LTFTNEKSLVNKVLEVSG-GKY  232 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~----~~~g~~~~---~~~~~~~~~~~~i~~~~~-~~g  232 (296)
                      .+.+++|+|++|.+|...+..+ ...|++|++++++.++...+    ++.+....   .+..+..+..+.+.+... -..
T Consensus         5 ~~~~ilItGasg~iG~~l~~~l-~~~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~   83 (251)
T PRK12826          5 EGRVALVTGAARGIGRAIAVRL-AADGAEVIVVDICGDDAAATAELVEAAGGKARARQVDVRDRAALKAAVAAGVEDFGR   83 (251)
T ss_pred             CCCEEEEcCCCCcHHHHHHHHH-HHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHhCC
Confidence            4678999999999999988777 44699999999986554332    33333221   223332333333333221 126


Q ss_pred             ccEEEECCCC
Q psy1959         233 ANVVFEAVGG  242 (296)
Q Consensus       233 ~d~vld~~g~  242 (296)
                      +|.++.+.|.
T Consensus        84 ~d~vi~~ag~   93 (251)
T PRK12826         84 LDILVANAGI   93 (251)
T ss_pred             CCEEEECCCC
Confidence            8999999865

>PRK07806 short chain dehydrogenase; Provisional

Probab=96.05  E-value=0.046  Score=47.29  Aligned_cols=81  Identities=20%  Similarity=0.207  Sum_probs=50.1

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcc-hHHH----HHhcCCcE-E--EEcCCchhHHHHHHHHhC-CC
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSED-KTDL----IRQKGAWA-A--LTFTNEKSLVNKVLEVSG-GK  231 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~-~~~~----~~~~g~~~-~--~~~~~~~~~~~~i~~~~~-~~  231 (296)
                      .+++++|+|++|++|...+..+ ...|.+|++++++.+ +.+.    ++..+... .  .+..+..+....+.+... ..
T Consensus         5 ~~k~vlItGasggiG~~l~~~l-~~~G~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~   83 (248)
T PRK07806          5 PGKTALVTGSSRGIGADTAKIL-AGAGAHVVVNYRQKAPRANKVVAEIEAAGGRASAVGADLTDEESVAALMDTAREEFG   83 (248)
T ss_pred             CCcEEEEECCCCcHHHHHHHHH-HHCCCEEEEEeCCchHhHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHhCC
Confidence            4679999999999999988877 457999998887643 3322    22223222 1  233442333333333321 13


Q ss_pred             cccEEEECCCC
Q psy1959         232 YANVVFEAVGG  242 (296)
Q Consensus       232 g~d~vld~~g~  242 (296)
                      ++|+++.+.|.
T Consensus        84 ~~d~vi~~ag~   94 (248)
T PRK07806         84 GLDALVLNASG   94 (248)
T ss_pred             CCcEEEECCCC
Confidence            68999988864

>PRK06523 short chain dehydrogenase; Provisional

Probab=96.04  E-value=0.024  Score=49.47  Aligned_cols=78  Identities=21%  Similarity=0.208  Sum_probs=48.6

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCc-EEEEcCCchhHHHHHHHHhC-CCcccEEEE
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAW-AALTFTNEKSLVNKVLEVSG-GKYANVVFE  238 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~i~~~~~-~~g~d~vld  238 (296)
                      ++++++|+|++|++|...++.+ ...|++|+++++++++..   ..... ...+..+..+..+.+.+... ...+|++++
T Consensus         8 ~~k~vlItGas~gIG~~ia~~l-~~~G~~v~~~~r~~~~~~---~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~vi~   83 (260)
T PRK06523          8 AGKRALVTGGTKGIGAATVARL-LEAGARVVTTARSRPDDL---PEGVEFVAADLTTAEGCAAVARAVLERLGGVDILVH   83 (260)
T ss_pred             CCCEEEEECCCCchhHHHHHHH-HHCCCEEEEEeCChhhhc---CCceeEEecCCCCHHHHHHHHHHHHHHcCCCCEEEE
Confidence            5789999999999999988877 447999999998754321   11111 11233332233332322211 236899999


Q ss_pred             CCCC
Q psy1959         239 AVGG  242 (296)
Q Consensus       239 ~~g~  242 (296)
                      +.|.
T Consensus        84 ~ag~   87 (260)
T PRK06523         84 VLGG   87 (260)
T ss_pred             CCcc
Confidence            9883

>PRK06720 hypothetical protein; Provisional

Probab=96.04  E-value=0.071  Score=43.93  Aligned_cols=81  Identities=16%  Similarity=0.133  Sum_probs=51.4

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHH----HhcCCcE-E--EEcCCchhHHHHHHHHh-CCCc
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLI----RQKGAWA-A--LTFTNEKSLVNKVLEVS-GGKY  232 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~----~~~g~~~-~--~~~~~~~~~~~~i~~~~-~~~g  232 (296)
                      ++..++|.|+++++|.+.+..+ ...|++|++++++++..+..    .+.+... .  .+..+..++.+.+.+.. .-..
T Consensus        15 ~gk~~lVTGa~~GIG~aia~~l-~~~G~~V~l~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~v~~~~~~~G~   93 (169)
T PRK06720         15 AGKVAIVTGGGIGIGRNTALLL-AKQGAKVIVTDIDQESGQATVEEITNLGGEALFVSYDMEKQGDWQRVISITLNAFSR   93 (169)
T ss_pred             CCCEEEEecCCChHHHHHHHHH-HHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence            5789999999999999987766 44799999999876654332    2224332 2  22223233333333322 1236


Q ss_pred             ccEEEECCCC
Q psy1959         233 ANVVFEAVGG  242 (296)
Q Consensus       233 ~d~vld~~g~  242 (296)
                      +|+++++.|.
T Consensus        94 iDilVnnAG~  103 (169)
T PRK06720         94 IDMLFQNAGL  103 (169)
T ss_pred             CCEEEECCCc
Confidence            8999999984

>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.03  E-value=0.045  Score=52.95  Aligned_cols=83  Identities=17%  Similarity=0.178  Sum_probs=57.7

Q ss_pred             CCCCCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCcEEEEcCCchhHHHHHHHHhCCCcccEEE
Q psy1959         158 KLKEKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNKVLEVSGGKYANVVF  237 (296)
Q Consensus       158 ~~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~g~d~vl  237 (296)
                      .+.++++|+|+|. |..|+++++++ +..|++|++.|..+.+.+.+++.|+.. +....   ..+.+      ..+|+++
T Consensus         8 ~~~~~~~v~V~G~-G~sG~aa~~~L-~~~G~~v~~~D~~~~~~~~l~~~g~~~-~~~~~---~~~~l------~~~D~VV   75 (488)
T PRK03369          8 PLLPGAPVLVAGA-GVTGRAVLAAL-TRFGARPTVCDDDPDALRPHAERGVAT-VSTSD---AVQQI------ADYALVV   75 (488)
T ss_pred             cccCCCeEEEEcC-CHHHHHHHHHH-HHCCCEEEEEcCCHHHHHHHHhCCCEE-EcCcc---hHhHh------hcCCEEE
Confidence            3557899999997 99999999999 668999999997766666677777743 22211   11111      2579999


Q ss_pred             ECCCCccHHHHHHHh
Q psy1959         238 EAVGGEDKTDLIRQK  252 (296)
Q Consensus       238 d~~g~~~~~~~~~~l  252 (296)
                      .+.|-+.-...++..
T Consensus        76 ~SpGi~~~~p~~~~a   90 (488)
T PRK03369         76 TSPGFRPTAPVLAAA   90 (488)
T ss_pred             ECCCCCCCCHHHHHH
Confidence            999975433334443

>PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated

Probab=96.03  E-value=0.042  Score=47.91  Aligned_cols=81  Identities=12%  Similarity=0.111  Sum_probs=50.5

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcc--hHHHHHhcCCcEE---EEcCCchhHHHHHHHHhC-CCccc
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSED--KTDLIRQKGAWAA---LTFTNEKSLVNKVLEVSG-GKYAN  234 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~--~~~~~~~~g~~~~---~~~~~~~~~~~~i~~~~~-~~g~d  234 (296)
                      +|++++|+|++|++|.++++.+ ...|++|+.+++.+.  ..+.+++.+....   .+..+.++..+.+.+... ...+|
T Consensus         9 ~~k~~lItG~~~gIG~a~a~~l-~~~G~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~~D   87 (253)
T PRK08993          9 EGKVAVVTGCDTGLGQGMALGL-AEAGCDIVGINIVEPTETIEQVTALGRRFLSLTADLRKIDGIPALLERAVAEFGHID   87 (253)
T ss_pred             CCCEEEEECCCchHHHHHHHHH-HHCCCEEEEecCcchHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHhCCCC
Confidence            4789999999999999988877 447999998775432  2233444443222   222332333333333321 13689


Q ss_pred             EEEECCCC
Q psy1959         235 VVFEAVGG  242 (296)
Q Consensus       235 ~vld~~g~  242 (296)
                      +++++.|.
T Consensus        88 ~li~~Ag~   95 (253)
T PRK08993         88 ILVNNAGL   95 (253)
T ss_pred             EEEECCCC
Confidence            99999984

>CHL00194 ycf39 Ycf39; Provisional

Probab=96.03  E-value=0.035  Score=50.31  Aligned_cols=72  Identities=19%  Similarity=0.158  Sum_probs=50.1

Q ss_pred             EEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCcEEE-EcCCchhHHHHHHHHhCCCcccEEEECCCC
Q psy1959         164 TVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAAL-TFTNEKSLVNKVLEVSGGKYANVVFEAVGG  242 (296)
Q Consensus       164 ~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~i~~~~~~~g~d~vld~~g~  242 (296)
                      +|+|+|++|-+|..+++.+ ...|.+|++++++.++...+...+...+. +..+    .+.+.+..  +++|+|+++++.
T Consensus         2 kIlVtGatG~iG~~lv~~L-l~~g~~V~~l~R~~~~~~~l~~~~v~~v~~Dl~d----~~~l~~al--~g~d~Vi~~~~~   74 (317)
T CHL00194          2 SLLVIGATGTLGRQIVRQA-LDEGYQVRCLVRNLRKASFLKEWGAELVYGDLSL----PETLPPSF--KGVTAIIDASTS   74 (317)
T ss_pred             EEEEECCCcHHHHHHHHHH-HHCCCeEEEEEcChHHhhhHhhcCCEEEECCCCC----HHHHHHHH--CCCCEEEECCCC
Confidence            6999999999999998887 45799999999987766655555553322 2223    22333433  268999998763

>PRK08226 short chain dehydrogenase; Provisional

Probab=96.03  E-value=0.037  Score=48.37  Aligned_cols=81  Identities=16%  Similarity=0.176  Sum_probs=51.3

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHh---cCCcEE---EEcCCchhHHHHHHHHh-CCCcc
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQ---KGAWAA---LTFTNEKSLVNKVLEVS-GGKYA  233 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~---~g~~~~---~~~~~~~~~~~~i~~~~-~~~g~  233 (296)
                      ++.+++|+|++|++|.+.++.+ ...|++|+.++++++..+.+++   .+....   .+..+..+..+.+.+.. ....+
T Consensus         5 ~~~~~lItG~s~giG~~la~~l-~~~G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~~~i   83 (263)
T PRK08226          5 TGKTALITGALQGIGEGIARVF-ARHGANLILLDISPEIEKLADELCGRGHRCTAVVADVRDPASVAAAIKRAKEKEGRI   83 (263)
T ss_pred             CCCEEEEeCCCChHHHHHHHHH-HHCCCEEEEecCCHHHHHHHHHHHHhCCceEEEECCCCCHHHHHHHHHHHHHHcCCC
Confidence            4689999999999999988887 4579999999987654333322   232221   23333233333333321 12368


Q ss_pred             cEEEECCCC
Q psy1959         234 NVVFEAVGG  242 (296)
Q Consensus       234 d~vld~~g~  242 (296)
                      |+++.+.|.
T Consensus        84 d~vi~~ag~   92 (263)
T PRK08226         84 DILVNNAGV   92 (263)
T ss_pred             CEEEECCCc
Confidence            999999883

>PRK08303 short chain dehydrogenase; Provisional

Probab=96.02  E-value=0.043  Score=49.63  Aligned_cols=80  Identities=14%  Similarity=0.137  Sum_probs=50.3

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCc----------chHHH----HHhcCCcEE---EEcCCchhHHHH
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSE----------DKTDL----IRQKGAWAA---LTFTNEKSLVNK  223 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~----------~~~~~----~~~~g~~~~---~~~~~~~~~~~~  223 (296)
                      .+++++|+|+++++|+++++.+ ...|++|+++++++          ++.+.    +...+....   .+..+..+....
T Consensus         7 ~~k~~lITGgs~GIG~aia~~l-a~~G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dv~~~~~v~~~   85 (305)
T PRK08303          7 RGKVALVAGATRGAGRGIAVEL-GAAGATVYVTGRSTRARRSEYDRPETIEETAELVTAAGGRGIAVQVDHLVPEQVRAL   85 (305)
T ss_pred             CCCEEEEeCCCchHHHHHHHHH-HHCCCEEEEEecccccccccccccchHHHHHHHHHhcCCceEEEEcCCCCHHHHHHH
Confidence            5789999999999999988877 45799999998863          23332    223333221   233332333333


Q ss_pred             HHHHhC-CCcccEEEECC-C
Q psy1959         224 VLEVSG-GKYANVVFEAV-G  241 (296)
Q Consensus       224 i~~~~~-~~g~d~vld~~-g  241 (296)
                      +.+... -..+|+++++. |
T Consensus        86 ~~~~~~~~g~iDilVnnA~g  105 (305)
T PRK08303         86 VERIDREQGRLDILVNDIWG  105 (305)
T ss_pred             HHHHHHHcCCccEEEECCcc
Confidence            333322 12689999988 5

>PRK08085 gluconate 5-dehydrogenase; Provisional

Probab=96.02  E-value=0.038  Score=48.05  Aligned_cols=81  Identities=17%  Similarity=0.247  Sum_probs=52.5

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHH----hcCCcEE---EEcCCchhHHHHHHHHhC-CCc
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIR----QKGAWAA---LTFTNEKSLVNKVLEVSG-GKY  232 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~----~~g~~~~---~~~~~~~~~~~~i~~~~~-~~g  232 (296)
                      .+++++|+|++|++|.++++.+ ...|++|+.+++++++...+.    +.+....   .+..+..+..+.+.+... -..
T Consensus         8 ~~k~~lItGas~giG~~ia~~L-~~~G~~vvl~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~   86 (254)
T PRK08085          8 AGKNILITGSAQGIGFLLATGL-AEYGAEIIINDITAERAELAVAKLRQEGIKAHAAPFNVTHKQEVEAAIEHIEKDIGP   86 (254)
T ss_pred             CCCEEEEECCCChHHHHHHHHH-HHcCCEEEEEcCCHHHHHHHHHHHHhcCCeEEEEecCCCCHHHHHHHHHHHHHhcCC
Confidence            5789999999999999988877 447999999998877654432    2232221   233332333333333221 136


Q ss_pred             ccEEEECCCC
Q psy1959         233 ANVVFEAVGG  242 (296)
Q Consensus       233 ~d~vld~~g~  242 (296)
                      +|+++.+.|.
T Consensus        87 id~vi~~ag~   96 (254)
T PRK08085         87 IDVLINNAGI   96 (254)
T ss_pred             CCEEEECCCc
Confidence            8999999984

>PRK08690 enoyl-(acyl carrier protein) reductase; Provisional

Probab=96.01  E-value=0.035  Score=48.84  Aligned_cols=81  Identities=6%  Similarity=0.076  Sum_probs=49.4

Q ss_pred             CCcEEEEEcC--CCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHh----cCCcEE--EEcCCchhHHHHHHHHhC-CC
Q psy1959         161 EKQTVLVTAA--GGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQ----KGAWAA--LTFTNEKSLVNKVLEVSG-GK  231 (296)
Q Consensus       161 ~g~~vlI~Ga--~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~----~g~~~~--~~~~~~~~~~~~i~~~~~-~~  231 (296)
                      ++++++|+|+  ++++|.+.++.+ ...|++|++..+.++..+.+++    .+....  .+..+.++..+.+.+... -.
T Consensus         5 ~~k~~lITGa~~~~GIG~a~a~~l-~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g   83 (261)
T PRK08690          5 QGKKILITGMISERSIAYGIAKAC-REQGAELAFTYVVDKLEERVRKMAAELDSELVFRCDVASDDEINQVFADLGKHWD   83 (261)
T ss_pred             CCcEEEEECCCCCCcHHHHHHHHH-HHCCCEEEEEcCcHHHHHHHHHHHhccCCceEEECCCCCHHHHHHHHHHHHHHhC
Confidence            5789999996  579999977777 4579999987665432233322    232222  233332344444433322 13


Q ss_pred             cccEEEECCCC
Q psy1959         232 YANVVFEAVGG  242 (296)
Q Consensus       232 g~d~vld~~g~  242 (296)
                      ++|+++++.|.
T Consensus        84 ~iD~lVnnAG~   94 (261)
T PRK08690         84 GLDGLVHSIGF   94 (261)
T ss_pred             CCcEEEECCcc
Confidence            69999999885

>PRK08703 short chain dehydrogenase; Provisional

Probab=96.01  E-value=0.055  Score=46.61  Aligned_cols=80  Identities=23%  Similarity=0.261  Sum_probs=51.2

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHh----cCC-c---EEEEcCC--chhHH---HHHHHH
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQ----KGA-W---AALTFTN--EKSLV---NKVLEV  227 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~----~g~-~---~~~~~~~--~~~~~---~~i~~~  227 (296)
                      ++++++|+|++|++|...++.+ ...|++|+++++++++.+.+.+    .+. .   ...+..+  ..++.   +.+.+.
T Consensus         5 ~~k~vlItG~sggiG~~la~~l-~~~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~i~~~   83 (239)
T PRK08703          5 SDKTILVTGASQGLGEQVAKAY-AAAGATVILVARHQKKLEKVYDAIVEAGHPEPFAIRFDLMSAEEKEFEQFAATIAEA   83 (239)
T ss_pred             CCCEEEEECCCCcHHHHHHHHH-HHcCCEEEEEeCChHHHHHHHHHHHHcCCCCcceEEeeecccchHHHHHHHHHHHHH
Confidence            4679999999999999988877 4579999999998876654422    221 1   1122211  12222   233333


Q ss_pred             hCCCcccEEEECCCC
Q psy1959         228 SGGKYANVVFEAVGG  242 (296)
Q Consensus       228 ~~~~g~d~vld~~g~  242 (296)
                      .. ..+|.++.+.|.
T Consensus        84 ~~-~~id~vi~~ag~   97 (239)
T PRK08703         84 TQ-GKLDGIVHCAGY   97 (239)
T ss_pred             hC-CCCCEEEEeccc
Confidence            31 268999999884

>PRK06124 gluconate 5-dehydrogenase; Provisional

Probab=96.00  E-value=0.047  Score=47.49  Aligned_cols=81  Identities=19%  Similarity=0.239  Sum_probs=53.1

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHH----hcCCcE-E--EEcCCchhHHHHHHHHhC-CCc
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIR----QKGAWA-A--LTFTNEKSLVNKVLEVSG-GKY  232 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~----~~g~~~-~--~~~~~~~~~~~~i~~~~~-~~g  232 (296)
                      ++++++|.|++|++|..+++.+ ...|++|+.+++++++.+.+.    +.+... .  .+..+..+....+.+... -..
T Consensus        10 ~~k~ilItGas~~IG~~la~~l-~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~   88 (256)
T PRK06124         10 AGQVALVTGSARGLGFEIARAL-AGAGAHVLVNGRNAATLEAAVAALRAAGGAAEALAFDIADEEAVAAAFARIDAEHGR   88 (256)
T ss_pred             CCCEEEEECCCchHHHHHHHHH-HHcCCeEEEEeCCHHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHhcCC
Confidence            5889999999999999988877 347999999999876654432    233222 1  233332333433433321 136


Q ss_pred             ccEEEECCCC
Q psy1959         233 ANVVFEAVGG  242 (296)
Q Consensus       233 ~d~vld~~g~  242 (296)
                      +|+++.+.|.
T Consensus        89 id~vi~~ag~   98 (256)
T PRK06124         89 LDILVNNVGA   98 (256)
T ss_pred             CCEEEECCCC
Confidence            8999999884

>PRK06484 short chain dehydrogenase; Validated

Probab=96.00  E-value=0.032  Score=54.15  Aligned_cols=81  Identities=14%  Similarity=0.181  Sum_probs=55.4

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHh-cCCcEE---EEcCCchhHHHHHHHHhC-CCcccE
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQ-KGAWAA---LTFTNEKSLVNKVLEVSG-GKYANV  235 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~-~g~~~~---~~~~~~~~~~~~i~~~~~-~~g~d~  235 (296)
                      .+++++|+|+++++|++.++.+ ...|++|+++++++++.+.+.+ .+....   .+..+..+..+.+.+... -..+|+
T Consensus       268 ~~k~~lItGas~gIG~~~a~~l-~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~id~  346 (520)
T PRK06484        268 SPRVVAITGGARGIGRAVADRF-AAAGDRLLIIDRDAEGAKKLAEALGDEHLSVQADITDEAAVESAFAQIQARWGRLDV  346 (520)
T ss_pred             CCCEEEEECCCcHHHHHHHHHH-HHCCCEEEEEeCCHHHHHHHHHHhCCceeEEEccCCCHHHHHHHHHHHHHHcCCCCE
Confidence            5789999999999999988777 4479999999998887776654 343221   233332334333433321 136899


Q ss_pred             EEECCCC
Q psy1959         236 VFEAVGG  242 (296)
Q Consensus       236 vld~~g~  242 (296)
                      ++.+.|.
T Consensus       347 li~nAg~  353 (520)
T PRK06484        347 LVNNAGI  353 (520)
T ss_pred             EEECCCC
Confidence            9999884

>PRK07984 enoyl-(acyl carrier protein) reductase; Provisional

Probab=95.99  E-value=0.045  Score=48.31  Aligned_cols=81  Identities=10%  Similarity=0.092  Sum_probs=49.6

Q ss_pred             CCcEEEEEcCCC--cHHHHHHHHHHHhCCCEEEEEeCCcc---hHHHHHh-cCCcEE--EEcCCchhHHHHHHHHhCC-C
Q psy1959         161 EKQTVLVTAAGG--GLGLAAVDMATKIYKAKVIGVCNSED---KTDLIRQ-KGAWAA--LTFTNEKSLVNKVLEVSGG-K  231 (296)
Q Consensus       161 ~g~~vlI~Ga~g--~vG~aa~~la~~~~g~~Vi~~~~~~~---~~~~~~~-~g~~~~--~~~~~~~~~~~~i~~~~~~-~  231 (296)
                      ++++++|+|+++  ++|.++++.+ ...|++|+..+++++   ..+.+.. .+....  .+..+..+....+.+.... .
T Consensus         5 ~~k~~lITGas~~~GIG~aia~~l-a~~G~~vil~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g   83 (262)
T PRK07984          5 SGKRILVTGVASKLSIAYGIAQAM-HREGAELAFTYQNDKLKGRVEEFAAQLGSDIVLPCDVAEDASIDAMFAELGKVWP   83 (262)
T ss_pred             CCCEEEEeCCCCCccHHHHHHHHH-HHCCCEEEEEecchhHHHHHHHHHhccCCceEeecCCCCHHHHHHHHHHHHhhcC
Confidence            578999999975  8999877776 447999998887632   2222322 222122  3334434444444443322 2


Q ss_pred             cccEEEECCCC
Q psy1959         232 YANVVFEAVGG  242 (296)
Q Consensus       232 g~d~vld~~g~  242 (296)
                      .+|+++++.|.
T Consensus        84 ~iD~linnAg~   94 (262)
T PRK07984         84 KFDGFVHSIGF   94 (262)
T ss_pred             CCCEEEECCcc
Confidence            58999999984

>PRK08278 short chain dehydrogenase; Provisional

Probab=95.97  E-value=0.039  Score=48.82  Aligned_cols=81  Identities=17%  Similarity=0.181  Sum_probs=50.5

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcch-------HH----HHHhcCCcEE---EEcCCchhHHHHHHH
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDK-------TD----LIRQKGAWAA---LTFTNEKSLVNKVLE  226 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~-------~~----~~~~~g~~~~---~~~~~~~~~~~~i~~  226 (296)
                      .+++++|+|++|++|...++.+ ...|++|++++++.++       .+    .+++.+....   .+..+.....+.+.+
T Consensus         5 ~~k~vlItGas~gIG~~ia~~l-~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~   83 (273)
T PRK08278          5 SGKTLFITGASRGIGLAIALRA-ARDGANIVIAAKTAEPHPKLPGTIHTAAEEIEAAGGQALPLVGDVRDEDQVAAAVAK   83 (273)
T ss_pred             CCCEEEEECCCchHHHHHHHHH-HHCCCEEEEEecccccccchhhHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHH
Confidence            4679999999999999988877 4579999999986542       11    1223333222   333332333333333


Q ss_pred             HhC-CCcccEEEECCCC
Q psy1959         227 VSG-GKYANVVFEAVGG  242 (296)
Q Consensus       227 ~~~-~~g~d~vld~~g~  242 (296)
                      ... -..+|++|++.|.
T Consensus        84 ~~~~~g~id~li~~ag~  100 (273)
T PRK08278         84 AVERFGGIDICVNNASA  100 (273)
T ss_pred             HHHHhCCCCEEEECCCC
Confidence            211 1269999999884

>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit

Probab=95.96  E-value=0.12  Score=46.42  Aligned_cols=80  Identities=15%  Similarity=0.173  Sum_probs=56.9

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCcEEEEcCCchhHHHHHHHHhCCCcccEEEECC
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNKVLEVSGGKYANVVFEAV  240 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~g~d~vld~~  240 (296)
                      .|++++|+|. |.+|.+++..+ +.+|++|++.++++++.+.+.+.+... +..   .+    +.+..  ..+|++++++
T Consensus       150 ~gk~v~IiG~-G~iG~avA~~L-~~~G~~V~v~~R~~~~~~~~~~~g~~~-~~~---~~----l~~~l--~~aDiVint~  217 (287)
T TIGR02853       150 HGSNVMVLGF-GRTGMTIARTF-SALGARVFVGARSSADLARITEMGLIP-FPL---NK----LEEKV--AEIDIVINTI  217 (287)
T ss_pred             CCCEEEEEcC-hHHHHHHHHHH-HHCCCEEEEEeCCHHHHHHHHHCCCee-ecH---HH----HHHHh--ccCCEEEECC
Confidence            5789999997 99999999999 568999999999988877777666432 111   11    22222  3689999998


Q ss_pred             CCccH-HHHHHHh
Q psy1959         241 GGEDK-TDLIRQK  252 (296)
Q Consensus       241 g~~~~-~~~~~~l  252 (296)
                      ....+ ...++.+
T Consensus       218 P~~ii~~~~l~~~  230 (287)
T TIGR02853       218 PALVLTADVLSKL  230 (287)
T ss_pred             ChHHhCHHHHhcC
Confidence            75432 3345555

This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.

>PRK08277 D-mannonate oxidoreductase; Provisional

Probab=95.96  E-value=0.042  Score=48.53  Aligned_cols=81  Identities=20%  Similarity=0.232  Sum_probs=52.2

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHH----hcCCcEE---EEcCCchhHHHHHHHHhC-CCc
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIR----QKGAWAA---LTFTNEKSLVNKVLEVSG-GKY  232 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~----~~g~~~~---~~~~~~~~~~~~i~~~~~-~~g  232 (296)
                      ++++++|+|++|++|++.++.+ ...|++|+++++++++.+.+.    +.+....   .+..+..+....+.+... -..
T Consensus         9 ~~k~vlVtGas~giG~~ia~~l-~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g~   87 (278)
T PRK08277          9 KGKVAVITGGGGVLGGAMAKEL-ARAGAKVAILDRNQEKAEAVVAEIKAAGGEALAVKADVLDKESLEQARQQILEDFGP   87 (278)
T ss_pred             CCCEEEEeCCCchHHHHHHHHH-HHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence            5789999999999999988877 457999999998876654432    2233221   223332333333333221 136


Q ss_pred             ccEEEECCCC
Q psy1959         233 ANVVFEAVGG  242 (296)
Q Consensus       233 ~d~vld~~g~  242 (296)
                      +|+++.+.|.
T Consensus        88 id~li~~ag~   97 (278)
T PRK08277         88 CDILINGAGG   97 (278)
T ss_pred             CCEEEECCCC
Confidence            8999999883

>KOG1209|consensus

Probab=95.96  E-value=0.073  Score=45.29  Aligned_cols=80  Identities=16%  Similarity=0.231  Sum_probs=55.5

Q ss_pred             CCcEEEEEcC-CCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHH-hcCCcE-EEEcCCch---hHHHHHHHHhCCCccc
Q psy1959         161 EKQTVLVTAA-GGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIR-QKGAWA-ALTFTNEK---SLVNKVLEVSGGKYAN  234 (296)
Q Consensus       161 ~g~~vlI~Ga-~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~-~~g~~~-~~~~~~~~---~~~~~i~~~~~~~g~d  234 (296)
                      ..+.|||.|+ +|++|.+.+.-. ...|+.|+++.|+-+.++.+. ++|... -++..+++   .+..+++... ..+.|
T Consensus         6 ~~k~VlItgcs~GGIG~ala~ef-~~~G~~V~AtaR~~e~M~~L~~~~gl~~~kLDV~~~~~V~~v~~evr~~~-~Gkld   83 (289)
T KOG1209|consen    6 QPKKVLITGCSSGGIGYALAKEF-ARNGYLVYATARRLEPMAQLAIQFGLKPYKLDVSKPEEVVTVSGEVRANP-DGKLD   83 (289)
T ss_pred             CCCeEEEeecCCcchhHHHHHHH-HhCCeEEEEEccccchHhhHHHhhCCeeEEeccCChHHHHHHHHHHhhCC-CCceE
Confidence            4567889887 899999866655 347999999999999998887 677532 13333322   3334444433 34799


Q ss_pred             EEEECCCC
Q psy1959         235 VVFEAVGG  242 (296)
Q Consensus       235 ~vld~~g~  242 (296)
                      +.+++.|.
T Consensus        84 ~L~NNAG~   91 (289)
T KOG1209|consen   84 LLYNNAGQ   91 (289)
T ss_pred             EEEcCCCC
Confidence            99998874

>PRK07097 gluconate 5-dehydrogenase; Provisional

Probab=95.96  E-value=0.043  Score=48.17  Aligned_cols=81  Identities=17%  Similarity=0.142  Sum_probs=52.7

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHH----hcCCcEE---EEcCCchhHHHHHHHHhC-CCc
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIR----QKGAWAA---LTFTNEKSLVNKVLEVSG-GKY  232 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~----~~g~~~~---~~~~~~~~~~~~i~~~~~-~~g  232 (296)
                      ++++++|+|+++++|.+++..+ ...|++|+++++++++.+.+.    ..+....   .+..+..+..+.+.+... -..
T Consensus         9 ~~k~~lItGa~~~iG~~ia~~l-~~~G~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~   87 (265)
T PRK07097          9 KGKIALITGASYGIGFAIAKAY-AKAGATIVFNDINQELVDKGLAAYRELGIEAHGYVCDVTDEDGVQAMVSQIEKEVGV   87 (265)
T ss_pred             CCCEEEEeCCCchHHHHHHHHH-HHCCCeEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHhCCC
Confidence            5789999999999999877766 447999999998877654432    2343222   233332333333333321 136


Q ss_pred             ccEEEECCCC
Q psy1959         233 ANVVFEAVGG  242 (296)
Q Consensus       233 ~d~vld~~g~  242 (296)
                      +|+++.+.|.
T Consensus        88 id~li~~ag~   97 (265)
T PRK07097         88 IDILVNNAGI   97 (265)
T ss_pred             CCEEEECCCC
Confidence            8999999884

>PRK07424 bifunctional sterol desaturase/short chain dehydrogenase; Validated

Probab=95.96  E-value=0.049  Score=51.34  Aligned_cols=75  Identities=23%  Similarity=0.212  Sum_probs=49.3

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHH-hcCCc-EE--EEcCCchhHHHHHHHHhCCCcccEE
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIR-QKGAW-AA--LTFTNEKSLVNKVLEVSGGKYANVV  236 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~-~~g~~-~~--~~~~~~~~~~~~i~~~~~~~g~d~v  236 (296)
                      ++++++|+|++|++|.+.++.+ ...|++|+++++++++..... +.... ..  .+..+    .+.+.+..  .++|++
T Consensus       177 ~gK~VLITGASgGIG~aLA~~L-a~~G~~Vi~l~r~~~~l~~~~~~~~~~v~~v~~Dvsd----~~~v~~~l--~~IDiL  249 (406)
T PRK07424        177 KGKTVAVTGASGTLGQALLKEL-HQQGAKVVALTSNSDKITLEINGEDLPVKTLHWQVGQ----EAALAELL--EKVDIL  249 (406)
T ss_pred             CCCEEEEeCCCCHHHHHHHHHH-HHCCCEEEEEeCCHHHHHHHHhhcCCCeEEEEeeCCC----HHHHHHHh--CCCCEE
Confidence            4789999999999999988776 447999999998776654322 21111 11  23333    22333333  269999


Q ss_pred             EECCCC
Q psy1959         237 FEAVGG  242 (296)
Q Consensus       237 ld~~g~  242 (296)
                      +.+.|.
T Consensus       250 InnAGi  255 (406)
T PRK07424        250 IINHGI  255 (406)
T ss_pred             EECCCc
Confidence            998874

>PRK06914 short chain dehydrogenase; Provisional

Probab=95.95  E-value=0.046  Score=48.30  Aligned_cols=80  Identities=20%  Similarity=0.172  Sum_probs=52.0

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHh----cCC--cE-E--EEcCCchhHHHHHHHHhC-C
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQ----KGA--WA-A--LTFTNEKSLVNKVLEVSG-G  230 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~----~g~--~~-~--~~~~~~~~~~~~i~~~~~-~  230 (296)
                      .+++++|+|++|++|.+.+..+ ...|++|++++++.++.+.+.+    .+.  .. .  .+..+..++.. +.+... -
T Consensus         2 ~~k~~lItGasg~iG~~la~~l-~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~-~~~~~~~~   79 (280)
T PRK06914          2 NKKIAIVTGASSGFGLLTTLEL-AKKGYLVIATMRNPEKQENLLSQATQLNLQQNIKVQQLDVTDQNSIHN-FQLVLKEI   79 (280)
T ss_pred             CCCEEEEECCCchHHHHHHHHH-HhCCCEEEEEeCCHHHHHHHHHHHHhcCCCCceeEEecCCCCHHHHHH-HHHHHHhc
Confidence            3578999999999999988877 4479999999988776654432    221  11 1  23333233333 443321 2


Q ss_pred             CcccEEEECCCC
Q psy1959         231 KYANVVFEAVGG  242 (296)
Q Consensus       231 ~g~d~vld~~g~  242 (296)
                      ..+|+++.+.|.
T Consensus        80 ~~id~vv~~ag~   91 (280)
T PRK06914         80 GRIDLLVNNAGY   91 (280)
T ss_pred             CCeeEEEECCcc
Confidence            368999999874

>PRK06484 short chain dehydrogenase; Validated

Probab=95.93  E-value=0.035  Score=53.85  Aligned_cols=81  Identities=20%  Similarity=0.211  Sum_probs=55.6

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHH-hcCCcE---EEEcCCchhHHHHHHHHhC-CCcccE
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIR-QKGAWA---ALTFTNEKSLVNKVLEVSG-GKYANV  235 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~-~~g~~~---~~~~~~~~~~~~~i~~~~~-~~g~d~  235 (296)
                      ++++++|+|+++++|.++++.+ ...|++|+.++++.++.+.+. +++...   ..+..+..+..+.+.+... ...+|+
T Consensus         4 ~~k~~lITGas~gIG~aia~~l-~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~iD~   82 (520)
T PRK06484          4 QSRVVLVTGAAGGIGRAACQRF-ARAGDQVVVADRNVERARERADSLGPDHHALAMDVSDEAQIREGFEQLHREFGRIDV   82 (520)
T ss_pred             CCeEEEEECCCcHHHHHHHHHH-HHCCCEEEEEeCCHHHHHHHHHHhCCceeEEEeccCCHHHHHHHHHHHHHHhCCCCE
Confidence            5789999999999999988877 457999999999888766554 444332   2333342344444433321 136999


Q ss_pred             EEECCCC
Q psy1959         236 VFEAVGG  242 (296)
Q Consensus       236 vld~~g~  242 (296)
                      ++++.|.
T Consensus        83 li~nag~   89 (520)
T PRK06484         83 LVNNAGV   89 (520)
T ss_pred             EEECCCc
Confidence            9999874

>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional

Probab=95.91  E-value=0.043  Score=47.94  Aligned_cols=80  Identities=18%  Similarity=0.166  Sum_probs=51.0

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHH----HhcCCcEE---EEcCCchhHHHHHHHHhC-CCc
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLI----RQKGAWAA---LTFTNEKSLVNKVLEVSG-GKY  232 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~----~~~g~~~~---~~~~~~~~~~~~i~~~~~-~~g  232 (296)
                      .+++++|+|+++++|.+.++.+ ...|++|++++++ ++.+.+    .+.+....   .+..+..+..+.+.+... ...
T Consensus        14 ~~k~vlItGas~gIG~~ia~~l-~~~G~~v~~~~~~-~~~~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~~g~   91 (258)
T PRK06935         14 DGKVAIVTGGNTGLGQGYAVAL-AKAGADIIITTHG-TNWDETRRLIEKEGRKVTFVQVDLTKPESAEKVVKEALEEFGK   91 (258)
T ss_pred             CCCEEEEeCCCchHHHHHHHHH-HHCCCEEEEEeCC-cHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence            5789999999999999988888 4579999999887 433333    22332221   233332333333333321 126


Q ss_pred             ccEEEECCCC
Q psy1959         233 ANVVFEAVGG  242 (296)
Q Consensus       233 ~d~vld~~g~  242 (296)
                      +|+++.+.|.
T Consensus        92 id~li~~ag~  101 (258)
T PRK06935         92 IDILVNNAGT  101 (258)
T ss_pred             CCEEEECCCC
Confidence            8999998874

>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional

Probab=95.88  E-value=0.05  Score=47.17  Aligned_cols=81  Identities=19%  Similarity=0.172  Sum_probs=52.4

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHh----cCCcEE---EEcCCchhHHHHHHHHhC-CCc
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQ----KGAWAA---LTFTNEKSLVNKVLEVSG-GKY  232 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~----~g~~~~---~~~~~~~~~~~~i~~~~~-~~g  232 (296)
                      ++++++|+|++|++|..+++.. ...|.+|++++++.++.+.+..    .+....   .+..+..+..+.+.+... ..+
T Consensus         3 ~~~~vlItG~sg~iG~~la~~l-~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~   81 (258)
T PRK12429          3 KGKVALVTGAASGIGLEIALAL-AKEGAKVVIADLNDEAAAAAAEALQKAGGKAIGVAMDVTDEEAINAGIDYAVETFGG   81 (258)
T ss_pred             CCCEEEEECCCchHHHHHHHHH-HHCCCeEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence            4679999999999999988877 4479999999998776654422    232221   233332333333333211 136


Q ss_pred             ccEEEECCCC
Q psy1959         233 ANVVFEAVGG  242 (296)
Q Consensus       233 ~d~vld~~g~  242 (296)
                      +|+++.+.|.
T Consensus        82 ~d~vi~~a~~   91 (258)
T PRK12429         82 VDILVNNAGI   91 (258)
T ss_pred             CCEEEECCCC
Confidence            8999998874

>PRK12743 oxidoreductase; Provisional

Probab=95.86  E-value=0.056  Score=47.14  Aligned_cols=80  Identities=18%  Similarity=0.189  Sum_probs=49.0

Q ss_pred             CcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeC-CcchHHH----HHhcCCcEE---EEcCCchhHHHHHHHHhC-CCc
Q psy1959         162 KQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCN-SEDKTDL----IRQKGAWAA---LTFTNEKSLVNKVLEVSG-GKY  232 (296)
Q Consensus       162 g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~-~~~~~~~----~~~~g~~~~---~~~~~~~~~~~~i~~~~~-~~g  232 (296)
                      +++++|+|+++++|+.+++.+ ...|++|+.+.+ +.++.+.    ++..+....   .+..+..+....+.+... -..
T Consensus         2 ~k~vlItGas~giG~~~a~~l-~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~   80 (256)
T PRK12743          2 AQVAIVTASDSGIGKACALLL-AQQGFDIGITWHSDEEGAKETAEEVRSHGVRAEIRQLDLSDLPEGAQALDKLIQRLGR   80 (256)
T ss_pred             CCEEEEECCCchHHHHHHHHH-HHCCCEEEEEeCCChHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence            468999999999999988888 457999988754 3333332    233443322   233332333333333221 136


Q ss_pred             ccEEEECCCC
Q psy1959         233 ANVVFEAVGG  242 (296)
Q Consensus       233 ~d~vld~~g~  242 (296)
                      +|+++.+.|.
T Consensus        81 id~li~~ag~   90 (256)
T PRK12743         81 IDVLVNNAGA   90 (256)
T ss_pred             CCEEEECCCC
Confidence            8999999874

>PRK07889 enoyl-(acyl carrier protein) reductase; Provisional

Probab=95.83  E-value=0.054  Score=47.43  Aligned_cols=81  Identities=21%  Similarity=0.154  Sum_probs=50.2

Q ss_pred             CCcEEEEEcC--CCcHHHHHHHHHHHhCCCEEEEEeCCc--chHHHHH-hcCCc---EEEEcCCchhHHHHHHHHhC-CC
Q psy1959         161 EKQTVLVTAA--GGGLGLAAVDMATKIYKAKVIGVCNSE--DKTDLIR-QKGAW---AALTFTNEKSLVNKVLEVSG-GK  231 (296)
Q Consensus       161 ~g~~vlI~Ga--~g~vG~aa~~la~~~~g~~Vi~~~~~~--~~~~~~~-~~g~~---~~~~~~~~~~~~~~i~~~~~-~~  231 (296)
                      .+++++|+|+  ++++|.++++.+ ...|++|++++++.  +..+.+. +++..   ...+..+..+..+.+.+... ..
T Consensus         6 ~~k~~lItGa~~s~GIG~a~a~~l-a~~G~~v~l~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~i~~~~~~~~~~~g   84 (256)
T PRK07889          6 EGKRILVTGVITDSSIAFHVARVA-QEQGAEVVLTGFGRALRLTERIAKRLPEPAPVLELDVTNEEHLASLADRVREHVD   84 (256)
T ss_pred             cCCEEEEeCCCCcchHHHHHHHHH-HHCCCEEEEecCccchhHHHHHHHhcCCCCcEEeCCCCCHHHHHHHHHHHHHHcC
Confidence            5689999998  799999988776 34799999988653  3334333 33321   11333332333333333321 23


Q ss_pred             cccEEEECCCC
Q psy1959         232 YANVVFEAVGG  242 (296)
Q Consensus       232 g~d~vld~~g~  242 (296)
                      .+|+++++.|.
T Consensus        85 ~iD~li~nAG~   95 (256)
T PRK07889         85 GLDGVVHSIGF   95 (256)
T ss_pred             CCcEEEEcccc
Confidence            69999998874

>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase

Probab=95.83  E-value=0.078  Score=49.52  Aligned_cols=80  Identities=18%  Similarity=0.199  Sum_probs=50.8

Q ss_pred             EEEEcCCCcHHHHHHHHHHHhCCC-EEEEEeCCcchHHHHHh--cCCcEE---EEcCCchhHHHHHHHHhCCCcccEEEE
Q psy1959         165 VLVTAAGGGLGLAAVDMATKIYKA-KVIGVCNSEDKTDLIRQ--KGAWAA---LTFTNEKSLVNKVLEVSGGKYANVVFE  238 (296)
Q Consensus       165 vlI~Ga~g~vG~aa~~la~~~~g~-~Vi~~~~~~~~~~~~~~--~g~~~~---~~~~~~~~~~~~i~~~~~~~g~d~vld  238 (296)
                      |+|+|+ |.+|..+++.+.+.... +|++.+++.++.+.+.+  .+....   ++..+   . +.+.++..  +.|+|++
T Consensus         1 IlvlG~-G~vG~~~~~~L~~~~~~~~v~va~r~~~~~~~~~~~~~~~~~~~~~~d~~~---~-~~l~~~~~--~~dvVin   73 (386)
T PF03435_consen    1 ILVLGA-GRVGSAIARLLARRGPFEEVTVADRNPEKAERLAEKLLGDRVEAVQVDVND---P-ESLAELLR--GCDVVIN   73 (386)
T ss_dssp             EEEE---SHHHHHHHHHHHCTTCE-EEEEEESSHHHHHHHHT--TTTTEEEEE--TTT---H-HHHHHHHT--TSSEEEE
T ss_pred             CEEEcC-cHHHHHHHHHHhcCCCCCcEEEEECCHHHHHHHHhhccccceeEEEEecCC---H-HHHHHHHh--cCCEEEE
Confidence            689999 99999999998554445 89999999999887765  222221   23322   2 23555553  5699999


Q ss_pred             CCCCccHHHHHHH
Q psy1959         239 AVGGEDKTDLIRQ  251 (296)
Q Consensus       239 ~~g~~~~~~~~~~  251 (296)
                      |+|.......+++
T Consensus        74 ~~gp~~~~~v~~~   86 (386)
T PF03435_consen   74 CAGPFFGEPVARA   86 (386)
T ss_dssp             -SSGGGHHHHHHH
T ss_pred             CCccchhHHHHHH
Confidence            9997533333333

Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.

>PRK05875 short chain dehydrogenase; Provisional

Probab=95.82  E-value=0.042  Score=48.45  Aligned_cols=81  Identities=22%  Similarity=0.201  Sum_probs=51.8

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHH-h---cC--Cc-EEE--EcCCchhHHHHHHHHhC-C
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIR-Q---KG--AW-AAL--TFTNEKSLVNKVLEVSG-G  230 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~-~---~g--~~-~~~--~~~~~~~~~~~i~~~~~-~  230 (296)
                      ++++++|+|++|++|.++++.+ ...|++|+.+++++++.+... +   .+  .. ..+  +..+..+....+.+... .
T Consensus         6 ~~k~vlItGasg~IG~~la~~l-~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~   84 (276)
T PRK05875          6 QDRTYLVTGGGSGIGKGVAAGL-VAAGAAVMIVGRNPDKLAAAAEEIEALKGAGAVRYEPADVTDEDQVARAVDAATAWH   84 (276)
T ss_pred             CCCEEEEECCCcHHHHHHHHHH-HHCCCeEEEEeCCHHHHHHHHHHHHhccCCCceEEEEcCCCCHHHHHHHHHHHHHHc
Confidence            4689999999999999999888 457999999998876654332 2   11  11 112  33332333333333321 2


Q ss_pred             CcccEEEECCCC
Q psy1959         231 KYANVVFEAVGG  242 (296)
Q Consensus       231 ~g~d~vld~~g~  242 (296)
                      ..+|+++.+.|.
T Consensus        85 ~~~d~li~~ag~   96 (276)
T PRK05875         85 GRLHGVVHCAGG   96 (276)
T ss_pred             CCCCEEEECCCc
Confidence            368999999873

>PLN00141 Tic62-NAD(P)-related group II protein; Provisional

Probab=95.82  E-value=0.057  Score=47.11  Aligned_cols=77  Identities=22%  Similarity=0.179  Sum_probs=49.2

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcC--CcEE-EEcCCchhHHHHHHHHhCCCcccEEE
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKG--AWAA-LTFTNEKSLVNKVLEVSGGKYANVVF  237 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g--~~~~-~~~~~~~~~~~~i~~~~~~~g~d~vl  237 (296)
                      .+.+|+|+|++|.+|..+++.+ ...|.+|+++.++.++.......+  +..+ .+..+ .  .+.+.+.. ..++|++|
T Consensus        16 ~~~~ilItGasG~iG~~l~~~L-~~~g~~V~~~~R~~~~~~~~~~~~~~~~~~~~Dl~d-~--~~~l~~~~-~~~~d~vi   90 (251)
T PLN00141         16 KTKTVFVAGATGRTGKRIVEQL-LAKGFAVKAGVRDVDKAKTSLPQDPSLQIVRADVTE-G--SDKLVEAI-GDDSDAVI   90 (251)
T ss_pred             cCCeEEEECCCcHHHHHHHHHH-HhCCCEEEEEecCHHHHHHhcccCCceEEEEeeCCC-C--HHHHHHHh-hcCCCEEE
Confidence            3579999999999999988877 446899999988877654332212  2111 23322 1  12233332 13799999


Q ss_pred             ECCCC
Q psy1959         238 EAVGG  242 (296)
Q Consensus       238 d~~g~  242 (296)
                      .+.|.
T Consensus        91 ~~~g~   95 (251)
T PLN00141         91 CATGF   95 (251)
T ss_pred             ECCCC
Confidence            98774

>TIGR02632 RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alcohol dehydrogenase

Probab=95.82  E-value=0.053  Score=54.62  Aligned_cols=113  Identities=21%  Similarity=0.253  Sum_probs=67.4

Q ss_pred             ccceEeeeCCceEECCCCCCHHHHhhhccHHHHHHHHHHHHcC--CCCCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEE
Q psy1959         116 FSDQCVVHTNDVFKIPEKMTFEHAASLADSYSTAQIVFSRHAK--LKEKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGV  193 (296)
Q Consensus       116 ~~~~~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~l~~~~~--~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~  193 (296)
                      ..+|.-+++...|.+ +-.+++++= |           .+...  .-.+++++|+|++|++|.++++.+ ...|++|+++
T Consensus       379 ~~~~~~~~~~~~f~~-eyw~~e~~k-l-----------~~~~~~~~l~gkvvLVTGasggIG~aiA~~L-a~~Ga~Vvi~  444 (676)
T TIGR02632       379 VSEYVSLPEQEAFDI-EYWPLEEAK-L-----------RRMPKEKTLARRVAFVTGGAGGIGRETARRL-AAEGAHVVLA  444 (676)
T ss_pred             ccceecCchhhccch-hhhhhhHHh-h-----------ccCCCCcCCCCCEEEEeCCCcHHHHHHHHHH-HhCCCEEEEE
Confidence            455666666666665 444444442 1           01111  124789999999999999988877 4579999999


Q ss_pred             eCCcchHHHHHh-----cCCcE--E--EEcCCchhHHHHHHHHhC-CCcccEEEECCCC
Q psy1959         194 CNSEDKTDLIRQ-----KGAWA--A--LTFTNEKSLVNKVLEVSG-GKYANVVFEAVGG  242 (296)
Q Consensus       194 ~~~~~~~~~~~~-----~g~~~--~--~~~~~~~~~~~~i~~~~~-~~g~d~vld~~g~  242 (296)
                      +++.++.+.+.+     .+...  .  .+..+..++.+.+.+... -.++|+++++.|.
T Consensus       445 ~r~~~~~~~~~~~l~~~~~~~~~~~v~~Dvtd~~~v~~a~~~i~~~~g~iDilV~nAG~  503 (676)
T TIGR02632       445 DLNLEAAEAVAAEINGQFGAGRAVALKMDVTDEQAVKAAFADVALAYGGVDIVVNNAGI  503 (676)
T ss_pred             eCCHHHHHHHHHHHHhhcCCCcEEEEECCCCCHHHHHHHHHHHHHhcCCCcEEEECCCC
Confidence            998776654432     12211  1  233332333333433321 2369999999984

>PRK08159 enoyl-(acyl carrier protein) reductase; Provisional

Probab=95.81  E-value=0.059  Score=47.76  Aligned_cols=83  Identities=13%  Similarity=0.149  Sum_probs=51.4

Q ss_pred             CCCCcEEEEEcCC--CcHHHHHHHHHHHhCCCEEEEEeCCc---chHHHHH-hcCCcE--EEEcCCchhHHHHHHHHhC-
Q psy1959         159 LKEKQTVLVTAAG--GGLGLAAVDMATKIYKAKVIGVCNSE---DKTDLIR-QKGAWA--ALTFTNEKSLVNKVLEVSG-  229 (296)
Q Consensus       159 ~~~g~~vlI~Ga~--g~vG~aa~~la~~~~g~~Vi~~~~~~---~~~~~~~-~~g~~~--~~~~~~~~~~~~~i~~~~~-  229 (296)
                      +-.+++++|+|++  +++|++.++.+ ...|++|+.+.+++   ++.+.+. +++...  ..+..+..+..+.+.+... 
T Consensus         7 ~~~~k~~lItGas~~~GIG~aia~~l-a~~G~~V~l~~r~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~   85 (272)
T PRK08159          7 LMAGKRGLILGVANNRSIAWGIAKAC-RAAGAELAFTYQGDALKKRVEPLAAELGAFVAGHCDVTDEASIDAVFETLEKK   85 (272)
T ss_pred             cccCCEEEEECCCCCCcHHHHHHHHH-HHCCCEEEEEcCchHHHHHHHHHHHhcCCceEEecCCCCHHHHHHHHHHHHHh
Confidence            3367899999996  79999977777 45799998887653   3333332 334322  2333332344444444322 


Q ss_pred             CCcccEEEECCCC
Q psy1959         230 GKYANVVFEAVGG  242 (296)
Q Consensus       230 ~~g~d~vld~~g~  242 (296)
                      -..+|+++++.|.
T Consensus        86 ~g~iD~lv~nAG~   98 (272)
T PRK08159         86 WGKLDFVVHAIGF   98 (272)
T ss_pred             cCCCcEEEECCcc
Confidence            2368999999874

>PRK05557 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated

Probab=95.81  E-value=0.084  Score=45.31  Aligned_cols=81  Identities=22%  Similarity=0.226  Sum_probs=49.7

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcch-HHH----HHhcCCcEE-E--EcCCchhHHHHHHHHhC-CC
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDK-TDL----IRQKGAWAA-L--TFTNEKSLVNKVLEVSG-GK  231 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~-~~~----~~~~g~~~~-~--~~~~~~~~~~~i~~~~~-~~  231 (296)
                      ++.+++|+|++|++|...+..+ ...|++|+++.++..+ .+.    ++..+.... +  +..+..++.+.+.+... -.
T Consensus         4 ~~~~vlItG~sg~iG~~l~~~l-~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~   82 (248)
T PRK05557          4 EGKVALVTGASRGIGRAIAERL-AAQGANVVINYASSEAGAEALVAEIGALGGKALAVQGDVSDAESVERAVDEAKAEFG   82 (248)
T ss_pred             CCCEEEEECCCchHHHHHHHHH-HHCCCEEEEEeCCchhHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence            4578999999999999999888 4579999777765442 222    222333222 2  33332333333333321 13


Q ss_pred             cccEEEECCCC
Q psy1959         232 YANVVFEAVGG  242 (296)
Q Consensus       232 g~d~vld~~g~  242 (296)
                      ++|.++.+.|.
T Consensus        83 ~id~vi~~ag~   93 (248)
T PRK05557         83 GVDILVNNAGI   93 (248)
T ss_pred             CCCEEEECCCc
Confidence            68999999874

>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase

Probab=95.79  E-value=0.056  Score=46.71  Aligned_cols=81  Identities=25%  Similarity=0.247  Sum_probs=52.3

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHh----cCCcE-E--EEcCCchhHHHHHHHHhC-CCc
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQ----KGAWA-A--LTFTNEKSLVNKVLEVSG-GKY  232 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~----~g~~~-~--~~~~~~~~~~~~i~~~~~-~~g  232 (296)
                      ++++++|+|++|++|..+++.+ ...|++|+.++++.++.+.+.+    .+... .  .+..+..+..+.+.+... -..
T Consensus         2 ~~~~ilItGas~~iG~~la~~l-~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~   80 (250)
T TIGR03206         2 KDKTAIVTGGGGGIGGATCRRF-AEEGAKVAVFDLNREAAEKVAADIRAKGGNAQAFACDITDRDSVDTAVAAAEQALGP   80 (250)
T ss_pred             CCCEEEEeCCCChHHHHHHHHH-HHCCCEEEEecCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence            4688999999999999988887 4579999999988776554432    23222 1  222332333333333321 136


Q ss_pred             ccEEEECCCC
Q psy1959         233 ANVVFEAVGG  242 (296)
Q Consensus       233 ~d~vld~~g~  242 (296)
                      +|++|.+.|.
T Consensus        81 ~d~vi~~ag~   90 (250)
T TIGR03206        81 VDVLVNNAGW   90 (250)
T ss_pred             CCEEEECCCC
Confidence            8999999973

Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.

>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=95.79  E-value=0.063  Score=46.16  Aligned_cols=81  Identities=14%  Similarity=0.178  Sum_probs=51.7

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHH----hcCCcEE---EEcCCchhHHHHHHHHhC-CCc
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIR----QKGAWAA---LTFTNEKSLVNKVLEVSG-GKY  232 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~----~~g~~~~---~~~~~~~~~~~~i~~~~~-~~g  232 (296)
                      .+.+++|.|++|++|..++..+ ...|++|+++++++++.+.+.    ..+....   .+..+..+..+.+.+... -.+
T Consensus         6 ~~~~vlVtG~sg~iG~~l~~~L-~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   84 (239)
T PRK07666          6 QGKNALITGAGRGIGRAVAIAL-AKEGVNVGLLARTEENLKAVAEEVEAYGVKVVIATADVSDYEEVTAAIEQLKNELGS   84 (239)
T ss_pred             CCCEEEEEcCCchHHHHHHHHH-HHCCCEEEEEeCCHHHHHHHHHHHHHhCCeEEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence            3578999999999999988776 447999999999877654432    2232221   122232333333333321 236


Q ss_pred             ccEEEECCCC
Q psy1959         233 ANVVFEAVGG  242 (296)
Q Consensus       233 ~d~vld~~g~  242 (296)
                      +|++|.+.|.
T Consensus        85 id~vi~~ag~   94 (239)
T PRK07666         85 IDILINNAGI   94 (239)
T ss_pred             ccEEEEcCcc
Confidence            8999999874

>PRK06128 oxidoreductase; Provisional

Probab=95.77  E-value=0.064  Score=48.15  Aligned_cols=81  Identities=19%  Similarity=0.148  Sum_probs=49.8

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcch--H----HHHHhcCCcEE---EEcCCchhHHHHHHHHhC-C
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDK--T----DLIRQKGAWAA---LTFTNEKSLVNKVLEVSG-G  230 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~--~----~~~~~~g~~~~---~~~~~~~~~~~~i~~~~~-~  230 (296)
                      .+++++|+|++|++|.+++..+ ...|++|+++.++.+.  .    +.++..+....   .+..+..+..+.+.+... -
T Consensus        54 ~~k~vlITGas~gIG~~~a~~l-~~~G~~V~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~  132 (300)
T PRK06128         54 QGRKALITGADSGIGRATAIAF-AREGADIALNYLPEEEQDAAEVVQLIQAEGRKAVALPGDLKDEAFCRQLVERAVKEL  132 (300)
T ss_pred             CCCEEEEecCCCcHHHHHHHHH-HHcCCEEEEEeCCcchHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHHHHHh
Confidence            5789999999999999988777 4479999887654332  1    22333343322   233332333333333221 2


Q ss_pred             CcccEEEECCCC
Q psy1959         231 KYANVVFEAVGG  242 (296)
Q Consensus       231 ~g~d~vld~~g~  242 (296)
                      .++|+++.+.|.
T Consensus       133 g~iD~lV~nAg~  144 (300)
T PRK06128        133 GGLDILVNIAGK  144 (300)
T ss_pred             CCCCEEEECCcc
Confidence            369999999884

>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional

Probab=95.77  E-value=0.055  Score=47.47  Aligned_cols=81  Identities=11%  Similarity=0.054  Sum_probs=49.6

Q ss_pred             CCcEEEEEcCC--CcHHHHHHHHHHHhCCCEEEEEeCCc---chHHHHH-hc-CCcE---EEEcCCchhHHHHHHHHhC-
Q psy1959         161 EKQTVLVTAAG--GGLGLAAVDMATKIYKAKVIGVCNSE---DKTDLIR-QK-GAWA---ALTFTNEKSLVNKVLEVSG-  229 (296)
Q Consensus       161 ~g~~vlI~Ga~--g~vG~aa~~la~~~~g~~Vi~~~~~~---~~~~~~~-~~-g~~~---~~~~~~~~~~~~~i~~~~~-  229 (296)
                      .+++++|+|++  +++|.++++.+ ...|++|+++++++   ++.+.+. +. +...   ..+..+..+..+.+.+... 
T Consensus         6 ~~k~~lItGa~~s~GIG~aia~~l-a~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~   84 (257)
T PRK08594          6 EGKTYVVMGVANKRSIAWGIARSL-HNAGAKLVFTYAGERLEKEVRELADTLEGQESLLLPCDVTSDEEITACFETIKEE   84 (257)
T ss_pred             CCCEEEEECCCCCCCHHHHHHHHH-HHCCCEEEEecCcccchHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHHHHHh
Confidence            57899999986  79999977776 34799999887643   3333333 22 2211   1233442344444444322 


Q ss_pred             CCcccEEEECCCC
Q psy1959         230 GKYANVVFEAVGG  242 (296)
Q Consensus       230 ~~g~d~vld~~g~  242 (296)
                      -..+|+++++.|.
T Consensus        85 ~g~ld~lv~nag~   97 (257)
T PRK08594         85 VGVIHGVAHCIAF   97 (257)
T ss_pred             CCCccEEEECccc
Confidence            1369999998873

>PRK12936 3-ketoacyl-(acyl-carrier-protein) reductase NodG; Reviewed

Probab=95.74  E-value=0.066  Score=46.03  Aligned_cols=81  Identities=15%  Similarity=0.153  Sum_probs=52.2

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHH-hcCCcE-E--EEcCCchhHHHHHHHHhC-CCcccE
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIR-QKGAWA-A--LTFTNEKSLVNKVLEVSG-GKYANV  235 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~-~~g~~~-~--~~~~~~~~~~~~i~~~~~-~~g~d~  235 (296)
                      ++.+++|+|++|++|+.+++.+ ...|+.|+...++.++.+.+. +.+... .  .+..+..+..+.+.+... -.++|+
T Consensus         5 ~~~~vlItGa~g~iG~~la~~l-~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~   83 (245)
T PRK12936          5 SGRKALVTGASGGIGEEIARLL-HAQGAIVGLHGTRVEKLEALAAELGERVKIFPANLSDRDEVKALGQKAEADLEGVDI   83 (245)
T ss_pred             CCCEEEEECCCChHHHHHHHHH-HHCCCEEEEEcCCHHHHHHHHHHhCCceEEEEccCCCHHHHHHHHHHHHHHcCCCCE
Confidence            4679999999999999988777 447899988888777766553 333222 1  233332333333333211 236999


Q ss_pred             EEECCCC
Q psy1959         236 VFEAVGG  242 (296)
Q Consensus       236 vld~~g~  242 (296)
                      ++.+.|.
T Consensus        84 vi~~ag~   90 (245)
T PRK12936         84 LVNNAGI   90 (245)
T ss_pred             EEECCCC
Confidence            9999884

>PF11017 DUF2855: Protein of unknown function (DUF2855); InterPro: IPR021276 This family of proteins has no known function

Probab=95.71  E-value=0.83  Score=41.38  Aligned_cols=145  Identities=14%  Similarity=0.148  Sum_probs=86.5

Q ss_pred             CCCCCCCCCEEEEecCC-------------------------CCCcccceEeeeCCceEECCCCCCHHHHhhhccH-HHH
Q psy1959          95 EEDVLQVGDKVLALNKE-------------------------LLHGFSDQCVVHTNDVFKIPEKMTFEHAASLADS-YST  148 (296)
Q Consensus        95 ~v~~~~~Gd~V~~~~~~-------------------------~~g~~~~~~~v~~~~~~~iP~~~~~~~aa~l~~~-~~t  148 (296)
                      .++++.+|.||.++-+.                         ..-.|.+|.++..+..+.    -+.+..-+|..+ +.|
T Consensus        45 ~~~~i~vGerlyGy~P~ashl~l~p~~v~~~~f~d~s~hR~~l~~~YN~Y~r~~~d~~y~----~~~e~~~~LlrPLf~T  120 (314)
T PF11017_consen   45 RHPGIAVGERLYGYFPMASHLVLEPGKVSPGGFRDVSPHRAGLPPIYNQYLRVSADPAYD----PEREDWQMLLRPLFIT  120 (314)
T ss_pred             CCCCccCccEEEeeccccceeEEeccccCCCccccChhhhCcCchhhhceeecCCCcccC----cchhHHHHHHHHHHHH
Confidence            67889999999987650                         112234444443332221    122333233333 555


Q ss_pred             HHHHHHHHc--CCCCCcEEEEEcCCCcHHHHHHHHHHH-hCCCEEEEEeCCcchHHHHHhcCC-cEEEEcCCchhHHHHH
Q psy1959         149 AQIVFSRHA--KLKEKQTVLVTAAGGGLGLAAVDMATK-IYKAKVIGVCNSEDKTDLIRQKGA-WAALTFTNEKSLVNKV  224 (296)
Q Consensus       149 a~~~l~~~~--~~~~g~~vlI~Ga~g~vG~aa~~la~~-~~g~~Vi~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~i  224 (296)
                      .|..-.-+.  +.-..+.|+|..+|+-+++..+.++++ ..+.+++.+. |+....+.+.+|. +.++.|++       +
T Consensus       121 sfll~d~l~~~~~~ga~~vvl~SASSKTA~glA~~L~~~~~~~~~vglT-S~~N~~Fve~lg~Yd~V~~Yd~-------i  192 (314)
T PF11017_consen  121 SFLLDDFLFDNDFFGAAQVVLSSASSKTAIGLAYCLKKQRGPPKVVGLT-SARNVAFVESLGCYDEVLTYDD-------I  192 (314)
T ss_pred             HHHHHHHhcccccCCccEEEEeccchHHHHHHHHHhhccCCCceEEEEe-cCcchhhhhccCCceEEeehhh-------h
Confidence            554422111  233567888999999999998888842 3455888777 6777788888885 56777755       2


Q ss_pred             HHHhCCCcccEEEECCCCc-cHHHHHHHh
Q psy1959         225 LEVSGGKYANVVFEAVGGE-DKTDLIRQK  252 (296)
Q Consensus       225 ~~~~~~~g~d~vld~~g~~-~~~~~~~~l  252 (296)
                      ..+.. ..--+++|..|+. .....-..+
T Consensus       193 ~~l~~-~~~~v~VDfaG~~~~~~~Lh~~l  220 (314)
T PF11017_consen  193 DSLDA-PQPVVIVDFAGNGEVLAALHEHL  220 (314)
T ss_pred             hhccC-CCCEEEEECCCCHHHHHHHHHHH
Confidence            22221 2456899999994 555555555

>PRK08261 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=95.71  E-value=0.072  Score=50.76  Aligned_cols=81  Identities=20%  Similarity=0.190  Sum_probs=52.2

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcc--hHHHH-HhcCCcE-EEEcCCchhHHHHHHHHhC-CCcccE
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSED--KTDLI-RQKGAWA-ALTFTNEKSLVNKVLEVSG-GKYANV  235 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~--~~~~~-~~~g~~~-~~~~~~~~~~~~~i~~~~~-~~g~d~  235 (296)
                      ++++++|+|++|++|.++++.+ ...|++|+++++++.  +...+ .+.+... ..+..+.......+..... ..++|+
T Consensus       209 ~g~~vlItGasggIG~~la~~l-~~~Ga~vi~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~g~id~  287 (450)
T PRK08261        209 AGKVALVTGAARGIGAAIAEVL-ARDGAHVVCLDVPAAGEALAAVANRVGGTALALDITAPDAPARIAEHLAERHGGLDI  287 (450)
T ss_pred             CCCEEEEecCCCHHHHHHHHHH-HHCCCEEEEEeCCccHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHHHHHhCCCCCE
Confidence            5789999999999999998888 457999999987432  23332 3445432 2455442333333333221 226999


Q ss_pred             EEECCCC
Q psy1959         236 VFEAVGG  242 (296)
Q Consensus       236 vld~~g~  242 (296)
                      +|++.|.
T Consensus       288 vi~~AG~  294 (450)
T PRK08261        288 VVHNAGI  294 (450)
T ss_pred             EEECCCc
Confidence            9999983

>PF02670 DXP_reductoisom: 1-deoxy-D-xylulose 5-phosphate reductoisomerase; InterPro: IPR013512 1-deoxy-D-xylulose 5-phosphate reductoisomerase synthesises 2-C-methyl-D-erythritol 4-phosphate from 1-deoxy-D-xylulose 5-phosphate in a single step by intramolecular rearrangement and reduction and is responsible for terpenoid biosynthesis in some organisms []

Probab=95.69  E-value=0.23  Score=38.94  Aligned_cols=94  Identities=15%  Similarity=0.188  Sum_probs=59.8

Q ss_pred             EEEEcCCCcHHHHHHHHHHHhC-CCEEEEEeCCcc--h-HHHHHhcCCcEEEEcCCc--hhH----------------HH
Q psy1959         165 VLVTAAGGGLGLAAVDMATKIY-KAKVIGVCNSED--K-TDLIRQKGAWAALTFTNE--KSL----------------VN  222 (296)
Q Consensus       165 vlI~Ga~g~vG~aa~~la~~~~-g~~Vi~~~~~~~--~-~~~~~~~g~~~~~~~~~~--~~~----------------~~  222 (296)
                      |.|+|++|.+|..++++.++.. .++|+.+.....  + .+.++++.+..+...++.  ..+                .+
T Consensus         1 i~ILGsTGSIG~qtLdVi~~~~d~f~v~~Lsa~~n~~~L~~q~~~f~p~~v~i~~~~~~~~l~~~~~~~~~~~~v~~G~~   80 (129)
T PF02670_consen    1 IAILGSTGSIGTQTLDVIRKHPDKFEVVALSAGSNIEKLAEQAREFKPKYVVIADEEAYEELKKALPSKGPGIEVLSGPE   80 (129)
T ss_dssp             EEEESTTSHHHHHHHHHHHHCTTTEEEEEEEESSTHHHHHHHHHHHT-SEEEESSHHHHHHHHHHHHHTTSSSEEEESHH
T ss_pred             CEEEcCCcHHHHHHHHHHHhCCCceEEEEEEcCCCHHHHHHHHHHhCCCEEEEcCHHHHHHHHHHhhhcCCCCEEEeChH
Confidence            5789999999999999996543 268887775332  2 244566777776665431  111                12


Q ss_pred             HHHHHhCCCcccEEEECCCC-ccHHHHHHHhhccCceE
Q psy1959         223 KVLEVSGGKYANVVFEAVGG-EDKTDLIRQKGAWAALT  259 (296)
Q Consensus       223 ~i~~~~~~~g~d~vld~~g~-~~~~~~~~~lg~~~g~~  259 (296)
                      .+.++.....+|+++.++-+ ..+.-.+..+ ..+-.+
T Consensus        81 ~l~~~~~~~~~D~vv~Ai~G~aGL~pt~~Ai-~~gk~i  117 (129)
T PF02670_consen   81 GLEELAEEPEVDIVVNAIVGFAGLKPTLAAI-KAGKDI  117 (129)
T ss_dssp             HHHHHHTHTT-SEEEE--SSGGGHHHHHHHH-HTTSEE
T ss_pred             HHHHHhcCCCCCEEEEeCcccchHHHHHHHH-HCCCeE
Confidence            23344444579999998877 7899999998 666554

In Arabidopsis thaliana 1-deoxy-D-xylulose 5-phosphate reductoisomerase is the first committed enzyme of the non-mevalonate pathway for isoprenoid biosynthesis. The enzyme requires Mn2+, Co2+ or Mg2+ for activity, with the first being most effective. This domain is found at the N terminus of bacterial and plant 1-deoxy-D-xylulose 5-phosphate reductoisomerases.; GO: 0070402 NADPH binding, 0055114 oxidation-reduction process; PDB: 1R0K_D 1R0L_C 3A14_A 3A06_A 3AUA_A 3AU9_B 3AU8_B 3IIE_A 2Y1D_B 4AIC_A ....

>PRK05650 short chain dehydrogenase; Provisional

Probab=95.67  E-value=0.066  Score=47.10  Aligned_cols=78  Identities=17%  Similarity=0.076  Sum_probs=49.4

Q ss_pred             EEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHH----HhcCCcEE---EEcCCchhHHHHHHHHh-CCCcccE
Q psy1959         164 TVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLI----RQKGAWAA---LTFTNEKSLVNKVLEVS-GGKYANV  235 (296)
Q Consensus       164 ~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~----~~~g~~~~---~~~~~~~~~~~~i~~~~-~~~g~d~  235 (296)
                      +++|+|++|++|+..+..+ ...|++|++++++.++.+.+    +..+....   .+..+..+..+.+.+.. ...++|+
T Consensus         2 ~vlVtGasggIG~~la~~l-~~~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~i~~~~~~id~   80 (270)
T PRK05650          2 RVMITGAASGLGRAIALRW-AREGWRLALADVNEEGGEETLKLLREAGGDGFYQRCDVRDYSQLTALAQACEEKWGGIDV   80 (270)
T ss_pred             EEEEecCCChHHHHHHHHH-HHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHHcCCCCE
Confidence            6899999999999988777 34799999999887765533    22333322   22223223333332221 1236999


Q ss_pred             EEECCCC
Q psy1959         236 VFEAVGG  242 (296)
Q Consensus       236 vld~~g~  242 (296)
                      ++.+.|.
T Consensus        81 lI~~ag~   87 (270)
T PRK05650         81 IVNNAGV   87 (270)
T ss_pred             EEECCCC
Confidence            9999884

>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase

Probab=95.67  E-value=0.053  Score=46.96  Aligned_cols=80  Identities=20%  Similarity=0.187  Sum_probs=51.5

Q ss_pred             CcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHh----cCCcEE---EEcCCchhHHHHHHHHh-CCCcc
Q psy1959         162 KQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQ----KGAWAA---LTFTNEKSLVNKVLEVS-GGKYA  233 (296)
Q Consensus       162 g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~----~g~~~~---~~~~~~~~~~~~i~~~~-~~~g~  233 (296)
                      +++++|+|++|++|...+..+ ...|.+|++++++.++.+.+.+    .+....   .+..+..++...+.+.. .-.++
T Consensus         1 ~~~vlItGa~g~lG~~l~~~l-~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~   79 (255)
T TIGR01963         1 GKTALVTGAASGIGLAIALAL-AAAGANVVVNDLGEAGAEAAAKVATDAGGSVIYLVADVTKEDEIADMIAAAAAEFGGL   79 (255)
T ss_pred             CCEEEEcCCcchHHHHHHHHH-HHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHhcCCC
Confidence            357999999999999988777 4479999999998776655543    232221   23333233333333321 12368


Q ss_pred             cEEEECCCC
Q psy1959         234 NVVFEAVGG  242 (296)
Q Consensus       234 d~vld~~g~  242 (296)
                      |+++.+.|.
T Consensus        80 d~vi~~a~~   88 (255)
T TIGR01963        80 DILVNNAGI   88 (255)
T ss_pred             CEEEECCCC
Confidence            999998874

This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.

>PRK12938 acetyacetyl-CoA reductase; Provisional

Probab=95.67  E-value=0.047  Score=47.13  Aligned_cols=81  Identities=16%  Similarity=0.145  Sum_probs=48.8

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeC-Ccc-hHHHH---HhcCCcEE---EEcCCchhHHHHHHHHhC-CC
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCN-SED-KTDLI---RQKGAWAA---LTFTNEKSLVNKVLEVSG-GK  231 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~-~~~-~~~~~---~~~g~~~~---~~~~~~~~~~~~i~~~~~-~~  231 (296)
                      ++++++|+|++|++|..+++.+ ...|++|++..+ ++. +.+.+   ++.+....   .+..+..+..+.+.+... ..
T Consensus         2 ~~k~~lVtG~s~giG~~~a~~l-~~~G~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~   80 (246)
T PRK12938          2 SQRIAYVTGGMGGIGTSICQRL-HKDGFKVVAGCGPNSPRRVKWLEDQKALGFDFIASEGNVGDWDSTKAAFDKVKAEVG   80 (246)
T ss_pred             CCCEEEEECCCChHHHHHHHHH-HHcCCEEEEEcCCChHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHhC
Confidence            3678999999999999988888 457999887543 222 22222   33344332   233332333333333211 13


Q ss_pred             cccEEEECCCC
Q psy1959         232 YANVVFEAVGG  242 (296)
Q Consensus       232 g~d~vld~~g~  242 (296)
                      ++|+++++.|.
T Consensus        81 ~id~li~~ag~   91 (246)
T PRK12938         81 EIDVLVNNAGI   91 (246)
T ss_pred             CCCEEEECCCC
Confidence            79999999985

>PRK08219 short chain dehydrogenase; Provisional

Probab=95.66  E-value=0.074  Score=45.16  Aligned_cols=74  Identities=18%  Similarity=0.218  Sum_probs=48.1

Q ss_pred             cEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhc--CCcEE-EEcCCchhHHHHHHHHhCC-CcccEEEE
Q psy1959         163 QTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQK--GAWAA-LTFTNEKSLVNKVLEVSGG-KYANVVFE  238 (296)
Q Consensus       163 ~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~--g~~~~-~~~~~~~~~~~~i~~~~~~-~g~d~vld  238 (296)
                      .+++|+|++|.+|..++..+.+ . .+|++++++.++.+.+.+.  +...+ .+..+..    .+.+.... .++|.++.
T Consensus         4 ~~vlVtG~~g~iG~~l~~~l~~-~-~~V~~~~r~~~~~~~~~~~~~~~~~~~~D~~~~~----~~~~~~~~~~~id~vi~   77 (227)
T PRK08219          4 PTALITGASRGIGAAIARELAP-T-HTLLLGGRPAERLDELAAELPGATPFPVDLTDPE----AIAAAVEQLGRLDVLVH   77 (227)
T ss_pred             CEEEEecCCcHHHHHHHHHHHh-h-CCEEEEeCCHHHHHHHHHHhccceEEecCCCCHH----HHHHHHHhcCCCCEEEE
Confidence            5799999999999998887734 4 8999999987776655432  22111 2222312    23322221 26999999


Q ss_pred             CCCC
Q psy1959         239 AVGG  242 (296)
Q Consensus       239 ~~g~  242 (296)
                      +.|.
T Consensus        78 ~ag~   81 (227)
T PRK08219         78 NAGV   81 (227)
T ss_pred             CCCc
Confidence            9885

>PRK07102 short chain dehydrogenase; Provisional

Probab=95.60  E-value=0.076  Score=45.86  Aligned_cols=77  Identities=13%  Similarity=0.175  Sum_probs=49.6

Q ss_pred             cEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHh----c-CCcE-E--EEcCCchhHHHHHHHHhCCCccc
Q psy1959         163 QTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQ----K-GAWA-A--LTFTNEKSLVNKVLEVSGGKYAN  234 (296)
Q Consensus       163 ~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~----~-g~~~-~--~~~~~~~~~~~~i~~~~~~~g~d  234 (296)
                      ++++|+|++|++|...++.+ ...|++|+++++++++.+.+.+    . +... .  .+..+..+..+.+.+..  ..+|
T Consensus         2 ~~vlItGas~giG~~~a~~l-~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~--~~~d   78 (243)
T PRK07102          2 KKILIIGATSDIARACARRY-AAAGARLYLAARDVERLERLADDLRARGAVAVSTHELDILDTASHAAFLDSLP--ALPD   78 (243)
T ss_pred             cEEEEEcCCcHHHHHHHHHH-HhcCCEEEEEeCCHHHHHHHHHHHHHhcCCeEEEEecCCCChHHHHHHHHHHh--hcCC
Confidence            57999999999999988888 4579999999998876654322    1 1111 1  22233233333333332  2469


Q ss_pred             EEEECCCC
Q psy1959         235 VVFEAVGG  242 (296)
Q Consensus       235 ~vld~~g~  242 (296)
                      +++.+.|.
T Consensus        79 ~vv~~ag~   86 (243)
T PRK07102         79 IVLIAVGT   86 (243)
T ss_pred             EEEECCcC
Confidence            99998774

>PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=95.60  E-value=0.093  Score=47.33  Aligned_cols=81  Identities=22%  Similarity=0.144  Sum_probs=49.3

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCc-chHH----HHHhcCCcEEE---EcCCchhHHHHHHHHhCCCc
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSE-DKTD----LIRQKGAWAAL---TFTNEKSLVNKVLEVSGGKY  232 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~-~~~~----~~~~~g~~~~~---~~~~~~~~~~~i~~~~~~~g  232 (296)
                      ++++++|+|+++++|.+.++.+ ...|++|++.++.. ++.+    .++..+.....   +..+.....+.+.....-..
T Consensus        11 ~~k~~lVTGas~gIG~~ia~~L-~~~Ga~Vv~~~~~~~~~~~~~~~~i~~~g~~~~~~~~Dv~d~~~~~~~~~~~~~~g~   89 (306)
T PRK07792         11 SGKVAVVTGAAAGLGRAEALGL-ARLGATVVVNDVASALDASDVLDEIRAAGAKAVAVAGDISQRATADELVATAVGLGG   89 (306)
T ss_pred             CCCEEEEECCCChHHHHHHHHH-HHCCCEEEEecCCchhHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHhCC
Confidence            5789999999999999977777 44799999988643 2322    22333433222   22232233332322222236


Q ss_pred             ccEEEECCCC
Q psy1959         233 ANVVFEAVGG  242 (296)
Q Consensus       233 ~d~vld~~g~  242 (296)
                      +|+++++.|.
T Consensus        90 iD~li~nAG~   99 (306)
T PRK07792         90 LDIVVNNAGI   99 (306)
T ss_pred             CCEEEECCCC
Confidence            9999999885

>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated

Probab=95.60  E-value=0.073  Score=46.35  Aligned_cols=81  Identities=20%  Similarity=0.197  Sum_probs=52.7

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHH----hcCCcEE---EEcCCchhHHHHHHHHhC-CCc
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIR----QKGAWAA---LTFTNEKSLVNKVLEVSG-GKY  232 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~----~~g~~~~---~~~~~~~~~~~~i~~~~~-~~g  232 (296)
                      .+++++|+|+++++|...+..+ ...|++|+.+++++++.+.+.    +.+....   .+..+..+..+.+..... -..
T Consensus        10 ~~k~vlVtG~s~gIG~~la~~l-~~~G~~vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~~~~   88 (255)
T PRK06113         10 DGKCAIITGAGAGIGKEIAITF-ATAGASVVVSDINADAANHVVDEIQQLGGQAFACRCDITSEQELSALADFALSKLGK   88 (255)
T ss_pred             CCCEEEEECCCchHHHHHHHHH-HHCCCeEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence            4789999999999999988877 457999999998877654432    2232221   233332333333333221 236


Q ss_pred             ccEEEECCCC
Q psy1959         233 ANVVFEAVGG  242 (296)
Q Consensus       233 ~d~vld~~g~  242 (296)
                      +|+++.+.|.
T Consensus        89 ~d~li~~ag~   98 (255)
T PRK06113         89 VDILVNNAGG   98 (255)
T ss_pred             CCEEEECCCC
Confidence            8999999884

>PRK07370 enoyl-(acyl carrier protein) reductase; Validated

Probab=95.60  E-value=0.061  Score=47.17  Aligned_cols=81  Identities=6%  Similarity=-0.013  Sum_probs=48.2

Q ss_pred             CCcEEEEEcCC--CcHHHHHHHHHHHhCCCEEEEEeCCc------chHHHHHhcCCc-EE--EEcCCchhHHHHHHHHhC
Q psy1959         161 EKQTVLVTAAG--GGLGLAAVDMATKIYKAKVIGVCNSE------DKTDLIRQKGAW-AA--LTFTNEKSLVNKVLEVSG  229 (296)
Q Consensus       161 ~g~~vlI~Ga~--g~vG~aa~~la~~~~g~~Vi~~~~~~------~~~~~~~~~g~~-~~--~~~~~~~~~~~~i~~~~~  229 (296)
                      .+++++|+|++  +++|.++++.+ ...|++|++..++.      +..+.+++.+.. ..  .+..+.++..+.+.+...
T Consensus         5 ~~k~~lItGas~~~GIG~aia~~l-a~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~   83 (258)
T PRK07370          5 TGKKALVTGIANNRSIAWGIAQQL-HAAGAELGITYLPDEKGRFEKKVRELTEPLNPSLFLPCDVQDDAQIEETFETIKQ   83 (258)
T ss_pred             CCcEEEEeCCCCCCchHHHHHHHH-HHCCCEEEEEecCcccchHHHHHHHHHhccCcceEeecCcCCHHHHHHHHHHHHH
Confidence            57899999985  79999977777 44799998875432      223333332221 11  333342333333333321


Q ss_pred             -CCcccEEEECCCC
Q psy1959         230 -GKYANVVFEAVGG  242 (296)
Q Consensus       230 -~~g~d~vld~~g~  242 (296)
                       ...+|+++++.|.
T Consensus        84 ~~g~iD~lv~nag~   97 (258)
T PRK07370         84 KWGKLDILVHCLAF   97 (258)
T ss_pred             HcCCCCEEEEcccc
Confidence             1369999999884

>TIGR01035 hemA glutamyl-tRNA reductase

Probab=95.58  E-value=0.14  Score=48.58  Aligned_cols=141  Identities=20%  Similarity=0.231  Sum_probs=88.3

Q ss_pred             cCCCceeEEEEEEccCCCCCCCCCCCCCCCCCCCEEEE---------------ecCCCCCcccceEeeeCCceEE---C-
Q psy1959          70 VPGFEFSGTVIEVADTKSSSTEEDDEEDVLQVGDKVLA---------------LNKELLHGFSDQCVVHTNDVFK---I-  130 (296)
Q Consensus        70 ~~G~e~~G~V~~v~~~~~~~~~~g~~v~~~~~Gd~V~~---------------~~~~~~g~~~~~~~v~~~~~~~---i-  130 (296)
                      .-|.|+++.+.+|          +.+.+..-+|+.-++               .....++.|++++.++. .+..   | 
T Consensus        89 ~~~~~a~~hl~~V----------a~GldS~V~GE~qI~gQvk~a~~~a~~~~~~g~~l~~lf~~a~~~~k-~vr~~t~i~  157 (417)
T TIGR01035        89 LTGESAVEHLFRV----------ASGLDSMVVGETQILGQVKNAYKVAQEEKTVGKVLERLFQKAFSVGK-RVRTETDIS  157 (417)
T ss_pred             cCchHHHHHHHHH----------HhhhhhhhcCChHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHhh-hhhhhcCCC
Confidence            4688899999999          665555555553331               00122467888888876 3222   4 


Q ss_pred             CCCCCHHHHhhhccHHHHHHHHHHHHcCCCCCcEEEEEcCCCcHHHHHHHHHHHhCC-CEEEEEeCCcchHH-HHHhcCC
Q psy1959         131 PEKMTFEHAASLADSYSTAQIVFSRHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYK-AKVIGVCNSEDKTD-LIRQKGA  208 (296)
Q Consensus       131 P~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vlI~Ga~g~vG~aa~~la~~~~g-~~Vi~~~~~~~~~~-~~~~~g~  208 (296)
                      +..+|...+|.         ....+..+..++++++|+|+ |.+|..+++.+ ...| .+|++++++.++.. .+++++.
T Consensus       158 ~~~vSv~~~Av---------~la~~~~~~l~~~~VlViGa-G~iG~~~a~~L-~~~G~~~V~v~~rs~~ra~~la~~~g~  226 (417)
T TIGR01035       158 AGAVSISSAAV---------ELAERIFGSLKGKKALLIGA-GEMGELVAKHL-LRKGVGKILIANRTYERAEDLAKELGG  226 (417)
T ss_pred             CCCcCHHHHHH---------HHHHHHhCCccCCEEEEECC-hHHHHHHHHHH-HHCCCCEEEEEeCCHHHHHHHHHHcCC
Confidence            44444443331         11113334457899999997 99999999999 4578 58999999888755 5556665


Q ss_pred             cEEEEcCCchhHHHHHHHHhCCCcccEEEECCCC
Q psy1959         209 WAALTFTNEKSLVNKVLEVSGGKYANVVFEAVGG  242 (296)
Q Consensus       209 ~~~~~~~~~~~~~~~i~~~~~~~g~d~vld~~g~  242 (296)
                      . .+..   .+..    +..  .++|++|+|++.
T Consensus       227 ~-~i~~---~~l~----~~l--~~aDvVi~aT~s  250 (417)
T TIGR01035       227 E-AVKF---EDLE----EYL--AEADIVISSTGA  250 (417)
T ss_pred             e-EeeH---HHHH----HHH--hhCCEEEECCCC
Confidence            3 2222   1222    222  268999999987

This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.

>PRK06171 sorbitol-6-phosphate 2-dehydrogenase; Provisional

Probab=95.52  E-value=0.051  Score=47.60  Aligned_cols=78  Identities=15%  Similarity=0.143  Sum_probs=50.2

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCcE-EEEcCCchhHHHHHHHHhC-CCcccEEEE
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWA-ALTFTNEKSLVNKVLEVSG-GKYANVVFE  238 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~i~~~~~-~~g~d~vld  238 (296)
                      .+++++|+|++|++|.++++.+ ...|++|+.+++++++.+.   ..... ..+..+..+..+.+.+... -..+|+++.
T Consensus         8 ~~k~vlItG~s~gIG~~la~~l-~~~G~~v~~~~~~~~~~~~---~~~~~~~~D~~~~~~~~~~~~~~~~~~g~id~li~   83 (266)
T PRK06171          8 QGKIIIVTGGSSGIGLAIVKEL-LANGANVVNADIHGGDGQH---ENYQFVPTDVSSAEEVNHTVAEIIEKFGRIDGLVN   83 (266)
T ss_pred             CCCEEEEeCCCChHHHHHHHHH-HHCCCEEEEEeCCcccccc---CceEEEEccCCCHHHHHHHHHHHHHHcCCCCEEEE
Confidence            4689999999999999988877 4579999999987665431   11111 1233332333333333321 136899999


Q ss_pred             CCCC
Q psy1959         239 AVGG  242 (296)
Q Consensus       239 ~~g~  242 (296)
                      +.|.
T Consensus        84 ~Ag~   87 (266)
T PRK06171         84 NAGI   87 (266)
T ss_pred             CCcc
Confidence            9884

>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA

Probab=95.50  E-value=0.12  Score=44.35  Aligned_cols=72  Identities=18%  Similarity=0.159  Sum_probs=52.9

Q ss_pred             EEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcc--hHHHHHhcCCcEEEEcCCchhHHHHHHHHhCCCcccEEEECCCC
Q psy1959         165 VLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSED--KTDLIRQKGAWAALTFTNEKSLVNKVLEVSGGKYANVVFEAVGG  242 (296)
Q Consensus       165 vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~--~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~g~d~vld~~g~  242 (296)
                      |+|+|++|.+|..+++.+. ..+.+|.++.|+..  ..+.+++.|+..+ ..+  .+-.+.+.+..  +|+|.+|.+.+.
T Consensus         1 I~V~GatG~~G~~v~~~L~-~~~~~V~~l~R~~~~~~~~~l~~~g~~vv-~~d--~~~~~~l~~al--~g~d~v~~~~~~   74 (233)
T PF05368_consen    1 ILVTGATGNQGRSVVRALL-SAGFSVRALVRDPSSDRAQQLQALGAEVV-EAD--YDDPESLVAAL--KGVDAVFSVTPP   74 (233)
T ss_dssp             EEEETTTSHHHHHHHHHHH-HTTGCEEEEESSSHHHHHHHHHHTTTEEE-ES---TT-HHHHHHHH--TTCSEEEEESSC
T ss_pred             CEEECCccHHHHHHHHHHH-hCCCCcEEEEeccchhhhhhhhcccceEe-ecc--cCCHHHHHHHH--cCCceEEeecCc
Confidence            7899999999999999994 47889999998764  3566777888544 221  22245555555  389999999983

NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....

>PRK08063 enoyl-(acyl carrier protein) reductase; Provisional

Probab=95.48  E-value=0.085  Score=45.60  Aligned_cols=81  Identities=14%  Similarity=0.086  Sum_probs=49.9

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEE-eCCcchHHH----HHhcCCcEE---EEcCCchhHHHHHHHHhC-CC
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGV-CNSEDKTDL----IRQKGAWAA---LTFTNEKSLVNKVLEVSG-GK  231 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~-~~~~~~~~~----~~~~g~~~~---~~~~~~~~~~~~i~~~~~-~~  231 (296)
                      ++++++|+|++|++|+.++..+ ...|++|++. .++.++.+.    +++.+....   .+..+..+....+.+... ..
T Consensus         3 ~~~~vlItGa~g~iG~~~a~~l-~~~g~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~   81 (250)
T PRK08063          3 SGKVALVTGSSRGIGKAIALRL-AEEGYDIAVNYARSRKAAEETAEEIEALGRKALAVKANVGDVEKIKEMFAQIDEEFG   81 (250)
T ss_pred             CCCEEEEeCCCchHHHHHHHHH-HHCCCEEEEEcCCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence            4679999999999999988888 4579998764 555554433    233343222   223332333333433321 13


Q ss_pred             cccEEEECCCC
Q psy1959         232 YANVVFEAVGG  242 (296)
Q Consensus       232 g~d~vld~~g~  242 (296)
                      .+|+++.+.|.
T Consensus        82 ~id~vi~~ag~   92 (250)
T PRK08063         82 RLDVFVNNAAS   92 (250)
T ss_pred             CCCEEEECCCC
Confidence            68999999874

>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional

Probab=95.46  E-value=0.093  Score=45.42  Aligned_cols=83  Identities=22%  Similarity=0.208  Sum_probs=52.0

Q ss_pred             CCCCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHH----HhcCCcE--E--EEcC--CchhHHHHHHHHh
Q psy1959         159 LKEKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLI----RQKGAWA--A--LTFT--NEKSLVNKVLEVS  228 (296)
Q Consensus       159 ~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~----~~~g~~~--~--~~~~--~~~~~~~~i~~~~  228 (296)
                      ..++.+++|+|++|++|...++.+ ...|++|++++++.++.+.+    ++.+...  .  .+..  +..+..+.+..+.
T Consensus         9 ~~~~k~vlItG~~g~iG~~la~~l-~~~G~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~   87 (247)
T PRK08945          9 LLKDRIILVTGAGDGIGREAALTY-ARHGATVILLGRTEEKLEAVYDEIEAAGGPQPAIIPLDLLTATPQNYQQLADTIE   87 (247)
T ss_pred             ccCCCEEEEeCCCchHHHHHHHHH-HHCCCcEEEEeCCHHHHHHHHHHHHhcCCCCceEEEecccCCCHHHHHHHHHHHH
Confidence            447899999999999999988877 44799999999987665433    2333221  1  1221  1123333222221


Q ss_pred             C-CCcccEEEECCCC
Q psy1959         229 G-GKYANVVFEAVGG  242 (296)
Q Consensus       229 ~-~~g~d~vld~~g~  242 (296)
                      . ...+|.++.+.|.
T Consensus        88 ~~~~~id~vi~~Ag~  102 (247)
T PRK08945         88 EQFGRLDGVLHNAGL  102 (247)
T ss_pred             HHhCCCCEEEECCcc
Confidence            1 1268999998864

>PRK08416 7-alpha-hydroxysteroid dehydrogenase; Provisional

Probab=95.46  E-value=0.094  Score=45.90  Aligned_cols=80  Identities=15%  Similarity=0.142  Sum_probs=49.1

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeC-CcchHHHH----Hh-cCCcE-E--EEcCCchhHHHHHHHHhC-C
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCN-SEDKTDLI----RQ-KGAWA-A--LTFTNEKSLVNKVLEVSG-G  230 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~-~~~~~~~~----~~-~g~~~-~--~~~~~~~~~~~~i~~~~~-~  230 (296)
                      ++++++|+|+++++|.+++..+ ...|++|+.+.+ ++++.+.+    +. .+... .  .+..+..+..+.+.+... -
T Consensus         7 ~~k~vlItGas~gIG~~ia~~l-~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~   85 (260)
T PRK08416          7 KGKTLVISGGTRGIGKAIVYEF-AQSGVNIAFTYNSNVEEANKIAEDLEQKYGIKAKAYPLNILEPETYKELFKKIDEDF   85 (260)
T ss_pred             CCCEEEEeCCCchHHHHHHHHH-HHCCCEEEEEcCCCHHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHhc
Confidence            5789999999999999988777 447999988754 34443322    21 23222 1  233332344433433321 1


Q ss_pred             CcccEEEECCC
Q psy1959         231 KYANVVFEAVG  241 (296)
Q Consensus       231 ~g~d~vld~~g  241 (296)
                      ..+|+++++.|
T Consensus        86 g~id~lv~nAg   96 (260)
T PRK08416         86 DRVDFFISNAI   96 (260)
T ss_pred             CCccEEEECcc
Confidence            36899999886

>TIGR01289 LPOR light-dependent protochlorophyllide reductase

Probab=95.43  E-value=0.084  Score=47.85  Aligned_cols=80  Identities=24%  Similarity=0.221  Sum_probs=51.3

Q ss_pred             CcEEEEEcCCCcHHHHHHHHHHHhCC-CEEEEEeCCcchHHHHH-hcC---CcE-E--EEcCCchhHHHHHHHHhC-CCc
Q psy1959         162 KQTVLVTAAGGGLGLAAVDMATKIYK-AKVIGVCNSEDKTDLIR-QKG---AWA-A--LTFTNEKSLVNKVLEVSG-GKY  232 (296)
Q Consensus       162 g~~vlI~Ga~g~vG~aa~~la~~~~g-~~Vi~~~~~~~~~~~~~-~~g---~~~-~--~~~~~~~~~~~~i~~~~~-~~g  232 (296)
                      +++++|+|+++++|.++++.+ ...| ++|+++++++++.+.+. ++.   ... .  .+..+..+....+.+... ...
T Consensus         3 ~k~vlITGas~GIG~aia~~L-~~~G~~~V~l~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~~~   81 (314)
T TIGR01289         3 KPTVIITGASSGLGLYAAKAL-AATGEWHVIMACRDFLKAEQAAKSLGMPKDSYTIMHLDLGSLDSVRQFVQQFRESGRP   81 (314)
T ss_pred             CCEEEEECCCChHHHHHHHHH-HHcCCCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEEcCCCCHHHHHHHHHHHHHhCCC
Confidence            568999999999999977766 3468 89999998877665443 332   111 1  233332333333333321 236


Q ss_pred             ccEEEECCCC
Q psy1959         233 ANVVFEAVGG  242 (296)
Q Consensus       233 ~d~vld~~g~  242 (296)
                      +|+++.+.|.
T Consensus        82 iD~lI~nAG~   91 (314)
T TIGR01289        82 LDALVCNAAV   91 (314)
T ss_pred             CCEEEECCCc
Confidence            9999999874

This model represents the light-dependent, NADPH-dependent form of protochlorophyllide reductase. It belongs to the short chain alcohol dehydrogenase family, in contrast to the nitrogenase-related light-independent form.

>PRK12746 short chain dehydrogenase; Provisional

Probab=95.42  E-value=0.063  Score=46.57  Aligned_cols=81  Identities=19%  Similarity=0.156  Sum_probs=50.1

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEE-eCCcchHHHHH-h---cCCcE-E--EEcCCchhHHHHHHHHh----
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGV-CNSEDKTDLIR-Q---KGAWA-A--LTFTNEKSLVNKVLEVS----  228 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~-~~~~~~~~~~~-~---~g~~~-~--~~~~~~~~~~~~i~~~~----  228 (296)
                      .+.+++|+|++|++|...++.+ ...|++|++. .+++++.+.+. +   .+... .  .+..+..++.+.+.+..    
T Consensus         5 ~~~~ilItGasg~iG~~la~~l-~~~G~~v~i~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~i~~~~~~~~~~~~   83 (254)
T PRK12746          5 DGKVALVTGASRGIGRAIAMRL-ANDGALVAIHYGRNKQAADETIREIESNGGKAFLIEADLNSIDGVKKLVEQLKNELQ   83 (254)
T ss_pred             CCCEEEEeCCCchHHHHHHHHH-HHCCCEEEEEcCCCHHHHHHHHHHHHhcCCcEEEEEcCcCCHHHHHHHHHHHHHHhc
Confidence            3578999999999999988877 4479998775 56555543222 2   22222 1  23333344444444332    


Q ss_pred             ---CCCcccEEEECCCC
Q psy1959         229 ---GGKYANVVFEAVGG  242 (296)
Q Consensus       229 ---~~~g~d~vld~~g~  242 (296)
                         +..++|++|.+.|.
T Consensus        84 ~~~~~~~id~vi~~ag~  100 (254)
T PRK12746         84 IRVGTSEIDILVNNAGI  100 (254)
T ss_pred             cccCCCCccEEEECCCC
Confidence               12369999999874

>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase

Probab=95.42  E-value=0.091  Score=48.22  Aligned_cols=77  Identities=16%  Similarity=0.043  Sum_probs=48.9

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHH-HhcC--CcE-E--EEcCCchhHHHHHHHHhCCCccc
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLI-RQKG--AWA-A--LTFTNEKSLVNKVLEVSGGKYAN  234 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~-~~~g--~~~-~--~~~~~~~~~~~~i~~~~~~~g~d  234 (296)
                      ++.+|+|+|++|.+|..+++.+ ...|.+|+++++++...... ..++  ... .  .+..+..    .+.++....++|
T Consensus         3 ~~k~ilItGatG~IG~~l~~~L-~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~----~~~~~~~~~~~d   77 (349)
T TIGR02622         3 QGKKVLVTGHTGFKGSWLSLWL-LELGAEVYGYSLDPPTSPNLFELLNLAKKIEDHFGDIRDAA----KLRKAIAEFKPE   77 (349)
T ss_pred             CCCEEEEECCCChhHHHHHHHH-HHCCCEEEEEeCCCccchhHHHHHhhcCCceEEEccCCCHH----HHHHHHhhcCCC
Confidence            4689999999999999988888 45799999998866543322 1121  111 1  2223312    233333233689


Q ss_pred             EEEECCCC
Q psy1959         235 VVFEAVGG  242 (296)
Q Consensus       235 ~vld~~g~  242 (296)
                      +++.+.+.
T Consensus        78 ~vih~A~~   85 (349)
T TIGR02622        78 IVFHLAAQ   85 (349)
T ss_pred             EEEECCcc
Confidence            99999873

Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.

>PRK09135 pteridine reductase; Provisional

Probab=95.41  E-value=0.089  Score=45.29  Aligned_cols=81  Identities=12%  Similarity=0.087  Sum_probs=48.8

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCc-chHHHH----HhcCC-cE-E--EEcCCchhHHHHHHHHh-CC
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSE-DKTDLI----RQKGA-WA-A--LTFTNEKSLVNKVLEVS-GG  230 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~-~~~~~~----~~~g~-~~-~--~~~~~~~~~~~~i~~~~-~~  230 (296)
                      .+++++|+|++|++|..+++.+ ...|++|+.++++. ++.+.+    .+... .. .  .+..+..+....+.+.. .-
T Consensus         5 ~~~~vlItGa~g~iG~~l~~~l-~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~   83 (249)
T PRK09135          5 SAKVALITGGARRIGAAIARTL-HAAGYRVAIHYHRSAAEADALAAELNALRPGSAAALQADLLDPDALPELVAACVAAF   83 (249)
T ss_pred             CCCEEEEeCCCchHHHHHHHHH-HHCCCEEEEEcCCCHHHHHHHHHHHHhhcCCceEEEEcCCCCHHHHHHHHHHHHHHc
Confidence            4578999999999999887777 44799999998753 333322    22211 11 1  23333233333333221 11


Q ss_pred             CcccEEEECCCC
Q psy1959         231 KYANVVFEAVGG  242 (296)
Q Consensus       231 ~g~d~vld~~g~  242 (296)
                      ..+|++|.+.|.
T Consensus        84 ~~~d~vi~~ag~   95 (249)
T PRK09135         84 GRLDALVNNASS   95 (249)
T ss_pred             CCCCEEEECCCC
Confidence            368999999983

>PRK06701 short chain dehydrogenase; Provisional

Probab=95.32  E-value=0.11  Score=46.57  Aligned_cols=81  Identities=15%  Similarity=0.131  Sum_probs=49.7

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcch-HH----HHHhcCCcEE---EEcCCchhHHHHHHHHhC-CC
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDK-TD----LIRQKGAWAA---LTFTNEKSLVNKVLEVSG-GK  231 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~-~~----~~~~~g~~~~---~~~~~~~~~~~~i~~~~~-~~  231 (296)
                      ++.+++|+|++|++|..+++.+ ...|++|+++.+++++ .+    .++..+....   .+..+.....+.+.+... ..
T Consensus        45 ~~k~iLItGasggIG~~la~~l-~~~G~~V~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~i~~~~~  123 (290)
T PRK06701         45 KGKVALITGGDSGIGRAVAVLF-AKEGADIAIVYLDEHEDANETKQRVEKEGVKCLLIPGDVSDEAFCKDAVEETVRELG  123 (290)
T ss_pred             CCCEEEEeCCCcHHHHHHHHHH-HHCCCEEEEEeCCcchHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence            5789999999999999987777 3479999998876532 22    2222233222   233332333333333221 13


Q ss_pred             cccEEEECCCC
Q psy1959         232 YANVVFEAVGG  242 (296)
Q Consensus       232 g~d~vld~~g~  242 (296)
                      .+|+++.+.|.
T Consensus       124 ~iD~lI~~Ag~  134 (290)
T PRK06701        124 RLDILVNNAAF  134 (290)
T ss_pred             CCCEEEECCcc
Confidence            68999998874

>PRK12937 short chain dehydrogenase; Provisional

Probab=95.29  E-value=0.13  Score=44.32  Aligned_cols=81  Identities=16%  Similarity=0.128  Sum_probs=48.9

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcc-hHH----HHHhcCCcEE---EEcCCchhHHHHHHHHh-CCC
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSED-KTD----LIRQKGAWAA---LTFTNEKSLVNKVLEVS-GGK  231 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~-~~~----~~~~~g~~~~---~~~~~~~~~~~~i~~~~-~~~  231 (296)
                      ++.+++|+|++|++|+..++.+ ...|++++.+.++.. +.+    .++..+....   .+..+..+..+.+.+.. ...
T Consensus         4 ~~~~vlItG~~~~iG~~la~~l-~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~   82 (245)
T PRK12937          4 SNKVAIVTGASRGIGAAIARRL-AADGFAVAVNYAGSAAAADELVAEIEAAGGRAIAVQADVADAAAVTRLFDAAETAFG   82 (245)
T ss_pred             CCCEEEEeCCCchHHHHHHHHH-HHCCCEEEEecCCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence            5689999999999999988887 457999887765433 222    2223333222   22233233333333321 123


Q ss_pred             cccEEEECCCC
Q psy1959         232 YANVVFEAVGG  242 (296)
Q Consensus       232 g~d~vld~~g~  242 (296)
                      ++|+++.+.|.
T Consensus        83 ~id~vi~~ag~   93 (245)
T PRK12937         83 RIDVLVNNAGV   93 (245)
T ss_pred             CCCEEEECCCC
Confidence            68999999884

>KOG1208|consensus

Probab=95.28  E-value=0.099  Score=47.54  Aligned_cols=79  Identities=16%  Similarity=0.288  Sum_probs=52.1

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHh-c----CCcEE----EEcCCc---hhHHHHHHHHh
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQ-K----GAWAA----LTFTNE---KSLVNKVLEVS  228 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~-~----g~~~~----~~~~~~---~~~~~~i~~~~  228 (296)
                      .|.+++|+|+++|+|..++..+ ...|++|+.++++.++...+++ .    ....+    ++....   ..+.+.+.+  
T Consensus        34 ~~~~~vVTGansGIG~eta~~L-a~~Ga~Vv~~~R~~~~~~~~~~~i~~~~~~~~i~~~~lDLssl~SV~~fa~~~~~--  110 (314)
T KOG1208|consen   34 SGKVALVTGATSGIGFETAREL-ALRGAHVVLACRNEERGEEAKEQIQKGKANQKIRVIQLDLSSLKSVRKFAEEFKK--  110 (314)
T ss_pred             CCcEEEEECCCCchHHHHHHHH-HhCCCEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCHHHHHHHHHHHHh--
Confidence            5689999999999999988777 5579999999999876655543 2    12221    222221   222233322  


Q ss_pred             CCCcccEEEECCCC
Q psy1959         229 GGKYANVVFEAVGG  242 (296)
Q Consensus       229 ~~~g~d~vld~~g~  242 (296)
                      .....|+.+++.|-
T Consensus       111 ~~~~ldvLInNAGV  124 (314)
T KOG1208|consen  111 KEGPLDVLINNAGV  124 (314)
T ss_pred             cCCCccEEEeCccc
Confidence            23478999998883

>PRK07775 short chain dehydrogenase; Provisional

Probab=95.28  E-value=0.12  Score=45.65  Aligned_cols=81  Identities=20%  Similarity=0.190  Sum_probs=51.3

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHH----hcCCcEE---EEcCCchhHHHHHHHHh-CCCc
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIR----QKGAWAA---LTFTNEKSLVNKVLEVS-GGKY  232 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~----~~g~~~~---~~~~~~~~~~~~i~~~~-~~~g  232 (296)
                      +..+++|+|++|++|.++++.+ ...|++|++++++.++.+.+.    ..+....   .+..+..+..+.+.+.. .-..
T Consensus         9 ~~~~vlVtGa~g~iG~~la~~L-~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~   87 (274)
T PRK07775          9 DRRPALVAGASSGIGAATAIEL-AAAGFPVALGARRVEKCEELVDKIRADGGEAVAFPLDVTDPDSVKSFVAQAEEALGE   87 (274)
T ss_pred             CCCEEEEECCCchHHHHHHHHH-HHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHhcCC
Confidence            3568999999999999988877 447999999988766554332    2343322   23333233333333321 1136


Q ss_pred             ccEEEECCCC
Q psy1959         233 ANVVFEAVGG  242 (296)
Q Consensus       233 ~d~vld~~g~  242 (296)
                      +|.+|.+.|.
T Consensus        88 id~vi~~Ag~   97 (274)
T PRK07775         88 IEVLVSGAGD   97 (274)
T ss_pred             CCEEEECCCc
Confidence            8999999875

>PRK12745 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=95.27  E-value=0.15  Score=44.18  Aligned_cols=79  Identities=13%  Similarity=0.066  Sum_probs=48.2

Q ss_pred             cEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcc-hHH----HHHhcCCcE-E--EEcCCchhHHHHHHHHhC-CCcc
Q psy1959         163 QTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSED-KTD----LIRQKGAWA-A--LTFTNEKSLVNKVLEVSG-GKYA  233 (296)
Q Consensus       163 ~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~-~~~----~~~~~g~~~-~--~~~~~~~~~~~~i~~~~~-~~g~  233 (296)
                      ++++|+|++|++|..++..+ ...|++|++++++.. +.+    .++..+... .  .+..+..+..+.+.+... ...+
T Consensus         3 k~vlItG~sg~iG~~la~~L-~~~g~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i   81 (256)
T PRK12745          3 PVALVTGGRRGIGLGIARAL-AAAGFDLAINDRPDDEELAATQQELRALGVEVIFFPADVADLSAHEAMLDAAQAAWGRI   81 (256)
T ss_pred             cEEEEeCCCchHHHHHHHHH-HHCCCEEEEEecCchhHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHhcCCC
Confidence            57999999999999888777 457999999987543 222    222223221 1  233332333333333321 1368


Q ss_pred             cEEEECCCC
Q psy1959         234 NVVFEAVGG  242 (296)
Q Consensus       234 d~vld~~g~  242 (296)
                      |+++.+.|.
T Consensus        82 d~vi~~ag~   90 (256)
T PRK12745         82 DCLVNNAGV   90 (256)
T ss_pred             CEEEECCcc
Confidence            999999874

>PRK06940 short chain dehydrogenase; Provisional

Probab=95.26  E-value=0.17  Score=44.82  Aligned_cols=78  Identities=18%  Similarity=0.169  Sum_probs=50.5

Q ss_pred             CcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHH----hcCCcE-E--EEcCCchhHHHHHHHHhCCCccc
Q psy1959         162 KQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIR----QKGAWA-A--LTFTNEKSLVNKVLEVSGGKYAN  234 (296)
Q Consensus       162 g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~----~~g~~~-~--~~~~~~~~~~~~i~~~~~~~g~d  234 (296)
                      +++++|.|+ |++|.+++..+ . .|++|+.+++++++.+.+.    +.+... .  .+..+..+..+.+.+......+|
T Consensus         2 ~k~~lItGa-~gIG~~la~~l-~-~G~~Vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~i~~~~~~~~~~g~id   78 (275)
T PRK06940          2 KEVVVVIGA-GGIGQAIARRV-G-AGKKVLLADYNEENLEAAAKTLREAGFDVSTQEVDVSSRESVKALAATAQTLGPVT   78 (275)
T ss_pred             CCEEEEECC-ChHHHHHHHHH-h-CCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEeecCCHHHHHHHHHHHHhcCCCC
Confidence            357899997 79999988888 4 6999999999877654432    223322 1  34444234444443332223699


Q ss_pred             EEEECCCC
Q psy1959         235 VVFEAVGG  242 (296)
Q Consensus       235 ~vld~~g~  242 (296)
                      +++++.|.
T Consensus        79 ~li~nAG~   86 (275)
T PRK06940         79 GLVHTAGV   86 (275)
T ss_pred             EEEECCCc
Confidence            99999985

>PRK05599 hypothetical protein; Provisional

Probab=95.26  E-value=0.11  Score=45.25  Aligned_cols=77  Identities=10%  Similarity=0.085  Sum_probs=50.1

Q ss_pred             EEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHH----hcCCc--EE--EEcCCchhHHHHHHHHhC-CCccc
Q psy1959         164 TVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIR----QKGAW--AA--LTFTNEKSLVNKVLEVSG-GKYAN  234 (296)
Q Consensus       164 ~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~----~~g~~--~~--~~~~~~~~~~~~i~~~~~-~~g~d  234 (296)
                      +++|+|+++++|.+.++.. . .|++|+++.+++++.+.+.    +.+..  ..  .+..+..+..+.+.+... ...+|
T Consensus         2 ~vlItGas~GIG~aia~~l-~-~g~~Vil~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~id   79 (246)
T PRK05599          2 SILILGGTSDIAGEIATLL-C-HGEDVVLAARRPEAAQGLASDLRQRGATSVHVLSFDAQDLDTHRELVKQTQELAGEIS   79 (246)
T ss_pred             eEEEEeCccHHHHHHHHHH-h-CCCEEEEEeCCHHHHHHHHHHHHhccCCceEEEEcccCCHHHHHHHHHHHHHhcCCCC
Confidence            6899999999999988877 4 4899999999887765442    33432  12  233332333333333321 23689


Q ss_pred             EEEECCCC
Q psy1959         235 VVFEAVGG  242 (296)
Q Consensus       235 ~vld~~g~  242 (296)
                      +++.+.|.
T Consensus        80 ~lv~nag~   87 (246)
T PRK05599         80 LAVVAFGI   87 (246)
T ss_pred             EEEEecCc
Confidence            99998884

>TIGR00406 prmA ribosomal protein L11 methyltransferase

Probab=95.25  E-value=0.078  Score=47.58  Aligned_cols=146  Identities=12%  Similarity=0.074  Sum_probs=83.7

Q ss_pred             CCCCCCEEEEecCCCCCcccceEeeeCCceEECCCCCCHHHHhhhccHHHHHHHHHHHHcCCCCCcEEEEEcCCCcHHHH
Q psy1959          98 VLQVGDKVLALNKELLHGFSDQCVVHTNDVFKIPEKMTFEHAASLADSYSTAQIVFSRHAKLKEKQTVLVTAAGGGLGLA  177 (296)
Q Consensus        98 ~~~~Gd~V~~~~~~~~g~~~~~~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vlI~Ga~g~vG~a  177 (296)
                      .+.+|++.+..+.     |.++...+....+.+..++.+..+.- + ........+.+.  .+++++|+-.|+ |. |..
T Consensus       105 p~~~g~~~~i~p~-----w~~~~~~~~~~~i~ldpg~aFgtG~h-~-tt~l~l~~l~~~--~~~g~~VLDvGc-Gs-G~l  173 (288)
T TIGR00406       105 PVQFGKRFWICPS-----WRDVPSDEDALIIMLDPGLAFGTGTH-P-TTSLCLEWLEDL--DLKDKNVIDVGC-GS-GIL  173 (288)
T ss_pred             CEEEcCeEEEECC-----CcCCCCCCCcEEEEECCCCcccCCCC-H-HHHHHHHHHHhh--cCCCCEEEEeCC-Ch-hHH
Confidence            4778888877765     44443223345566777765543310 0 111122233222  457899999996 55 888


Q ss_pred             HHHHHHHhCCCEEEEEeCCcchHHHHHhc----CCcE-EEEcCCchhHHHHHHHHhCCCcccEEEECCCCc----cHHHH
Q psy1959         178 AVDMATKIYKAKVIGVCNSEDKTDLIRQK----GAWA-ALTFTNEKSLVNKVLEVSGGKYANVVFEAVGGE----DKTDL  248 (296)
Q Consensus       178 a~~la~~~~g~~Vi~~~~~~~~~~~~~~~----g~~~-~~~~~~~~~~~~~i~~~~~~~g~d~vld~~g~~----~~~~~  248 (296)
                      ++.++ +....+|++++.++...+.+++.    +... ......  +    ..... ..++|+++.+....    .+..+
T Consensus       174 ai~aa-~~g~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~--~----~~~~~-~~~fDlVvan~~~~~l~~ll~~~  245 (288)
T TIGR00406       174 SIAAL-KLGAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLI--Y----LEQPI-EGKADVIVANILAEVIKELYPQF  245 (288)
T ss_pred             HHHHH-HcCCCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEec--c----ccccc-CCCceEEEEecCHHHHHHHHHHH
Confidence            77777 54334999999998877777653    2221 111111  1    11111 34799999866543    34556


Q ss_pred             HHHhhccCceEEeec
Q psy1959         249 IRQKGAWAALTFTNE  263 (296)
Q Consensus       249 ~~~lg~~~g~~~~~~  263 (296)
                      .+.| +++|.+.+..
T Consensus       246 ~~~L-kpgG~li~sg  259 (288)
T TIGR00406       246 SRLV-KPGGWLILSG  259 (288)
T ss_pred             HHHc-CCCcEEEEEe
Confidence            6777 8888886654

Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.

>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional

Probab=95.23  E-value=0.21  Score=42.02  Aligned_cols=101  Identities=15%  Similarity=0.161  Sum_probs=65.5

Q ss_pred             HHcCCCCCcEEEEEcCCCcHHHHHHHHHHHhC-CCEEEEEeCCcchHHHHHh----cCC-cEEEEcCCchhHHHHHHHHh
Q psy1959         155 RHAKLKEKQTVLVTAAGGGLGLAAVDMATKIY-KAKVIGVCNSEDKTDLIRQ----KGA-WAALTFTNEKSLVNKVLEVS  228 (296)
Q Consensus       155 ~~~~~~~g~~vlI~Ga~g~vG~aa~~la~~~~-g~~Vi~~~~~~~~~~~~~~----~g~-~~~~~~~~~~~~~~~i~~~~  228 (296)
                      ...++.++++++-.|+ |. |..++.+++... +.+|++++.+++..+.+++    ++. +.+....  .+..+.+... 
T Consensus        34 ~~l~~~~~~~vlDlG~-Gt-G~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~--~d~~~~l~~~-  108 (198)
T PRK00377         34 SKLRLRKGDMILDIGC-GT-GSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIK--GEAPEILFTI-  108 (198)
T ss_pred             HHcCCCCcCEEEEeCC-cC-CHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEE--echhhhHhhc-
Confidence            4567889999999997 66 888888884332 3599999999888776643    452 2221111  1222222222 


Q ss_pred             CCCcccEEEECCCC----ccHHHHHHHhhccCceEEee
Q psy1959         229 GGKYANVVFEAVGG----EDKTDLIRQKGAWAALTFTN  262 (296)
Q Consensus       229 ~~~g~d~vld~~g~----~~~~~~~~~lg~~~g~~~~~  262 (296)
                       ...+|.++...+.    ..+..+.+.| +++|.+.+.
T Consensus       109 -~~~~D~V~~~~~~~~~~~~l~~~~~~L-kpgG~lv~~  144 (198)
T PRK00377        109 -NEKFDRIFIGGGSEKLKEIISASWEII-KKGGRIVID  144 (198)
T ss_pred             -CCCCCEEEECCCcccHHHHHHHHHHHc-CCCcEEEEE
Confidence             2379999986653    2466777788 888887653

>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=95.22  E-value=0.094  Score=45.08  Aligned_cols=80  Identities=21%  Similarity=0.249  Sum_probs=49.3

Q ss_pred             CcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEE-eCCcchHHHHHh----cCCcEE---EEcCCchhHHHHHHHHhC-CCc
Q psy1959         162 KQTVLVTAAGGGLGLAAVDMATKIYKAKVIGV-CNSEDKTDLIRQ----KGAWAA---LTFTNEKSLVNKVLEVSG-GKY  232 (296)
Q Consensus       162 g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~-~~~~~~~~~~~~----~g~~~~---~~~~~~~~~~~~i~~~~~-~~g  232 (296)
                      +++++|.|++|++|...+..+ ...|++|+++ +++.++.+.+.+    .+....   .+..+..++.+.+.+... -.+
T Consensus         5 ~~~ilI~Gasg~iG~~la~~l-~~~g~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   83 (247)
T PRK05565          5 GKVAIVTGASGGIGRAIAELL-AKEGAKVVIAYDINEEAAQELLEEIKEEGGDAIAVKADVSSEEDVENLVEQIVEKFGK   83 (247)
T ss_pred             CCEEEEeCCCcHHHHHHHHHH-HHCCCEEEEEcCCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHhCC
Confidence            568999999999999988776 3469999998 887766544332    222221   222332233232322211 126


Q ss_pred             ccEEEECCCC
Q psy1959         233 ANVVFEAVGG  242 (296)
Q Consensus       233 ~d~vld~~g~  242 (296)
                      +|++|.+.|.
T Consensus        84 id~vi~~ag~   93 (247)
T PRK05565         84 IDILVNNAGI   93 (247)
T ss_pred             CCEEEECCCc
Confidence            9999998874

>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase

Probab=95.22  E-value=0.097  Score=49.09  Aligned_cols=82  Identities=23%  Similarity=0.214  Sum_probs=52.0

Q ss_pred             CCCCCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHH-------HHHhc-CCcEE-EEcCCchhHHHHHHHHh
Q psy1959         158 KLKEKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTD-------LIRQK-GAWAA-LTFTNEKSLVNKVLEVS  228 (296)
Q Consensus       158 ~~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~-------~~~~~-g~~~~-~~~~~~~~~~~~i~~~~  228 (296)
                      +...+.+|+|+|++|.+|..+++.+ ...|.+|++++++..+..       ..... +...+ .+..+...+.+.+.+. 
T Consensus        56 ~~~~~~kVLVtGatG~IG~~l~~~L-l~~G~~V~~l~R~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~-  133 (390)
T PLN02657         56 KEPKDVTVLVVGATGYIGKFVVREL-VRRGYNVVAVAREKSGIRGKNGKEDTKKELPGAEVVFGDVTDADSLRKVLFSE-  133 (390)
T ss_pred             cCCCCCEEEEECCCcHHHHHHHHHH-HHCCCEEEEEEechhhccccchhhHHhhhcCCceEEEeeCCCHHHHHHHHHHh-
Confidence            3456789999999999999998887 447999999998765431       11111 22222 3344423333333322 


Q ss_pred             CCCcccEEEECCCC
Q psy1959         229 GGKYANVVFEAVGG  242 (296)
Q Consensus       229 ~~~g~d~vld~~g~  242 (296)
                       +.++|+|++|.+.
T Consensus       134 -~~~~D~Vi~~aa~  146 (390)
T PLN02657        134 -GDPVDVVVSCLAS  146 (390)
T ss_pred             -CCCCcEEEECCcc
Confidence             1269999999874

>PRK08642 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=95.19  E-value=0.11  Score=45.00  Aligned_cols=80  Identities=28%  Similarity=0.268  Sum_probs=47.9

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeC-CcchHHHHH-hcCCcE-E--EEcCCchhHHHHHHHHh--CCCcc
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCN-SEDKTDLIR-QKGAWA-A--LTFTNEKSLVNKVLEVS--GGKYA  233 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~-~~~~~~~~~-~~g~~~-~--~~~~~~~~~~~~i~~~~--~~~g~  233 (296)
                      .+++++|+|++|++|..++..+ ...|++|+...+ ++++.+.+. +.+... .  .+..+..+..+.+.+..  .+..+
T Consensus         4 ~~k~ilItGas~gIG~~la~~l-~~~G~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~~i   82 (253)
T PRK08642          4 SEQTVLVTGGSRGLGAAIARAF-AREGARVVVNYHQSEDAAEALADELGDRAIALQADVTDREQVQAMFATATEHFGKPI   82 (253)
T ss_pred             CCCEEEEeCCCCcHHHHHHHHH-HHCCCeEEEEcCCCHHHHHHHHHHhCCceEEEEcCCCCHHHHHHHHHHHHHHhCCCC
Confidence            3578999999999999988877 457999987654 444444333 233221 1  23333233333333321  12249


Q ss_pred             cEEEECCC
Q psy1959         234 NVVFEAVG  241 (296)
Q Consensus       234 d~vld~~g  241 (296)
                      |+++.+.|
T Consensus        83 d~li~~ag   90 (253)
T PRK08642         83 TTVVNNAL   90 (253)
T ss_pred             eEEEECCC
Confidence            99999876

>PRK07201 short chain dehydrogenase; Provisional

Probab=95.19  E-value=0.11  Score=51.89  Aligned_cols=80  Identities=21%  Similarity=0.242  Sum_probs=53.1

Q ss_pred             CcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHH----hcCCcEE---EEcCCchhHHHHHHHHhC-CCcc
Q psy1959         162 KQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIR----QKGAWAA---LTFTNEKSLVNKVLEVSG-GKYA  233 (296)
Q Consensus       162 g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~----~~g~~~~---~~~~~~~~~~~~i~~~~~-~~g~  233 (296)
                      +++++|+|++|++|..++..+ ...|++|+++++++++.+.+.    +.+....   .+..+..+..+.+.+... ...+
T Consensus       371 ~k~vlItGas~giG~~la~~l-~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~g~i  449 (657)
T PRK07201        371 GKVVLITGASSGIGRATAIKV-AEAGATVFLVARNGEALDELVAEIRAKGGTAHAYTCDLTDSAAVDHTVKDILAEHGHV  449 (657)
T ss_pred             CCEEEEeCCCCHHHHHHHHHH-HHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHhcCCC
Confidence            678999999999999988777 447999999999887765443    2233222   233332344444443321 1268


Q ss_pred             cEEEECCCC
Q psy1959         234 NVVFEAVGG  242 (296)
Q Consensus       234 d~vld~~g~  242 (296)
                      |+++.+.|.
T Consensus       450 d~li~~Ag~  458 (657)
T PRK07201        450 DYLVNNAGR  458 (657)
T ss_pred             CEEEECCCC
Confidence            999999984

>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional

Probab=95.13  E-value=0.19  Score=47.11  Aligned_cols=107  Identities=19%  Similarity=0.156  Sum_probs=71.2

Q ss_pred             HHHHHHHHHHHHcCCCCCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCcEEEEcCCchhHHHHH
Q psy1959         145 SYSTAQIVFSRHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNKV  224 (296)
Q Consensus       145 ~~~ta~~~l~~~~~~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i  224 (296)
                      +-...+..+.+..++++|++||-+|+  |.|..+..++ +..+++|+.++.+++..+.+++......+.... .++.   
T Consensus       151 Aq~~k~~~l~~~l~l~~g~rVLDIGc--G~G~~a~~la-~~~g~~V~giDlS~~~l~~A~~~~~~l~v~~~~-~D~~---  223 (383)
T PRK11705        151 AQEAKLDLICRKLQLKPGMRVLDIGC--GWGGLARYAA-EHYGVSVVGVTISAEQQKLAQERCAGLPVEIRL-QDYR---  223 (383)
T ss_pred             HHHHHHHHHHHHhCCCCCCEEEEeCC--CccHHHHHHH-HHCCCEEEEEeCCHHHHHHHHHHhccCeEEEEE-Cchh---
Confidence            33445555557778899999999996  5678888888 557899999999999999887753211121111 1221   


Q ss_pred             HHHhCCCcccEEEEC-----CCC----ccHHHHHHHhhccCceEEee
Q psy1959         225 LEVSGGKYANVVFEA-----VGG----EDKTDLIRQKGAWAALTFTN  262 (296)
Q Consensus       225 ~~~~~~~g~d~vld~-----~g~----~~~~~~~~~lg~~~g~~~~~  262 (296)
                       +.  ...+|.++..     +|.    ..+..+.+.| +++|.+.+.
T Consensus       224 -~l--~~~fD~Ivs~~~~ehvg~~~~~~~l~~i~r~L-kpGG~lvl~  266 (383)
T PRK11705        224 -DL--NGQFDRIVSVGMFEHVGPKNYRTYFEVVRRCL-KPDGLFLLH  266 (383)
T ss_pred             -hc--CCCCCEEEEeCchhhCChHHHHHHHHHHHHHc-CCCcEEEEE
Confidence             11  2368988753     343    2466777788 899988654

>PRK12747 short chain dehydrogenase; Provisional

Probab=95.13  E-value=0.19  Score=43.65  Aligned_cols=81  Identities=17%  Similarity=0.173  Sum_probs=47.9

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEe-CCcchHHHH----HhcCCcEE---EEcCCchhHHHHHHHHh----
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVC-NSEDKTDLI----RQKGAWAA---LTFTNEKSLVNKVLEVS----  228 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~-~~~~~~~~~----~~~g~~~~---~~~~~~~~~~~~i~~~~----  228 (296)
                      .+++++|+|+++++|.++++.+ ...|++|++.. +++++.+.+    ++.+....   .+..+..+....+.+..    
T Consensus         3 ~~k~~lItGas~gIG~~ia~~l-~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~   81 (252)
T PRK12747          3 KGKVALVTGASRGIGRAIAKRL-ANDGALVAIHYGNRKEEAEETVYEIQSNGGSAFSIGANLESLHGVEALYSSLDNELQ   81 (252)
T ss_pred             CCCEEEEeCCCChHHHHHHHHH-HHCCCeEEEEcCCCHHHHHHHHHHHHhcCCceEEEecccCCHHHHHHHHHHHHHHhh
Confidence            4689999999999999988877 45799998864 444443322    22232221   22222122222222221    


Q ss_pred             ---CCCcccEEEECCCC
Q psy1959         229 ---GGKYANVVFEAVGG  242 (296)
Q Consensus       229 ---~~~g~d~vld~~g~  242 (296)
                         +...+|+++++.|.
T Consensus        82 ~~~g~~~id~lv~~Ag~   98 (252)
T PRK12747         82 NRTGSTKFDILINNAGI   98 (252)
T ss_pred             hhcCCCCCCEEEECCCc
Confidence               12369999999883

>TIGR01829 AcAcCoA_reduct acetoacetyl-CoA reductase

Probab=95.11  E-value=0.11  Score=44.65  Aligned_cols=79  Identities=20%  Similarity=0.198  Sum_probs=47.6

Q ss_pred             cEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeC-CcchHHHH-Hh---cCCcE---EEEcCCchhHHHHHHHHhC-CCcc
Q psy1959         163 QTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCN-SEDKTDLI-RQ---KGAWA---ALTFTNEKSLVNKVLEVSG-GKYA  233 (296)
Q Consensus       163 ~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~-~~~~~~~~-~~---~g~~~---~~~~~~~~~~~~~i~~~~~-~~g~  233 (296)
                      ++++|+|++|++|...++.+ ...|++|+++.+ ++++.+.. .+   .+...   ..+..+...+.+.+.+... ...+
T Consensus         1 k~~lItG~sg~iG~~la~~l-~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i   79 (242)
T TIGR01829         1 RIALVTGGMGGIGTAICQRL-AKDGYRVAANCGPNEERAEAWLQEQGALGFDFRVVEGDVSSFESCKAAVAKVEAELGPI   79 (242)
T ss_pred             CEEEEECCCChHHHHHHHHH-HHCCCEEEEEeCCCHHHHHHHHHHHHhhCCceEEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence            46899999999999988888 457999998887 43333322 22   22211   1233332333333333221 2368


Q ss_pred             cEEEECCCC
Q psy1959         234 NVVFEAVGG  242 (296)
Q Consensus       234 d~vld~~g~  242 (296)
                      |.+|.+.|.
T Consensus        80 d~vi~~ag~   88 (242)
T TIGR01829        80 DVLVNNAGI   88 (242)
T ss_pred             cEEEECCCC
Confidence            999999974

(R)-3-hydroxyacyl-CoA + NADP+ = 3-oxoacyl-CoA + NADPH. Members of this family may act in the biosynthesis of poly-beta-hydroxybutyrate (e.g. Rhizobium meliloti) and related poly-beta-hydroxyalkanoates. Note that the member of this family from Azospirillum brasilense, designated NodG, appears to lack acetoacetyl-CoA reductase activity and to act instead in the production of nodulation factor. This family is downgraded to subfamily for this NodG. Other proteins designated NodG, as from Rhizobium, belong to related but distinct protein families.

>PRK06997 enoyl-(acyl carrier protein) reductase; Provisional

Probab=95.11  E-value=0.095  Score=46.03  Aligned_cols=81  Identities=9%  Similarity=0.064  Sum_probs=49.2

Q ss_pred             CCcEEEEEcC--CCcHHHHHHHHHHHhCCCEEEEEeCC---cchHHHH-HhcCCcEE--EEcCCchhHHHHHHHHhC-CC
Q psy1959         161 EKQTVLVTAA--GGGLGLAAVDMATKIYKAKVIGVCNS---EDKTDLI-RQKGAWAA--LTFTNEKSLVNKVLEVSG-GK  231 (296)
Q Consensus       161 ~g~~vlI~Ga--~g~vG~aa~~la~~~~g~~Vi~~~~~---~~~~~~~-~~~g~~~~--~~~~~~~~~~~~i~~~~~-~~  231 (296)
                      ++++++|+|+  ++++|+++++.+ ...|++|+.+.+.   +++.+.+ ++++....  .+..+.++..+.+.+... -.
T Consensus         5 ~~k~vlItGas~~~GIG~a~a~~l-~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g   83 (260)
T PRK06997          5 AGKRILITGLLSNRSIAYGIAKAC-KREGAELAFTYVGDRFKDRITEFAAEFGSDLVFPCDVASDEQIDALFASLGQHWD   83 (260)
T ss_pred             CCcEEEEeCCCCCCcHHHHHHHHH-HHCCCeEEEEccchHHHHHHHHHHHhcCCcceeeccCCCHHHHHHHHHHHHHHhC
Confidence            5789999996  579999977666 4479999887543   3333333 23343222  333332344444444322 13


Q ss_pred             cccEEEECCCC
Q psy1959         232 YANVVFEAVGG  242 (296)
Q Consensus       232 g~d~vld~~g~  242 (296)
                      .+|+++++.|.
T Consensus        84 ~iD~lvnnAG~   94 (260)
T PRK06997         84 GLDGLVHSIGF   94 (260)
T ss_pred             CCcEEEEcccc
Confidence            69999999874

>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A

Probab=95.09  E-value=0.064  Score=40.29  Aligned_cols=93  Identities=16%  Similarity=0.097  Sum_probs=61.6

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhc----C--CcEEEEcCCchhHHHHHHHHhCCCccc
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQK----G--AWAALTFTNEKSLVNKVLEVSGGKYAN  234 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~----g--~~~~~~~~~~~~~~~~i~~~~~~~g~d  234 (296)
                      |+.+||-.|+  +.|..+..++++..+++|+.++.+++-.+.+++.    +  ....+...+   + .  ........+|
T Consensus         1 p~~~vLDlGc--G~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d---~-~--~~~~~~~~~D   72 (112)
T PF12847_consen    1 PGGRVLDLGC--GTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGD---A-E--FDPDFLEPFD   72 (112)
T ss_dssp             TTCEEEEETT--TTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESC---C-H--GGTTTSSCEE
T ss_pred             CCCEEEEEcC--cCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECc---c-c--cCcccCCCCC
Confidence            6789998885  4488888888545799999999999988777653    2  222233322   2 1  1112234699


Q ss_pred             EEEECC-CC----cc------HHHHHHHhhccCceEEee
Q psy1959         235 VVFEAV-GG----ED------KTDLIRQKGAWAALTFTN  262 (296)
Q Consensus       235 ~vld~~-g~----~~------~~~~~~~lg~~~g~~~~~  262 (296)
                      +++... ..    ..      ++.+.+.| +++|.+.++
T Consensus        73 ~v~~~~~~~~~~~~~~~~~~~l~~~~~~L-~pgG~lvi~  110 (112)
T PF12847_consen   73 LVICSGFTLHFLLPLDERRRVLERIRRLL-KPGGRLVIN  110 (112)
T ss_dssp             EEEECSGSGGGCCHHHHHHHHHHHHHHHE-EEEEEEEEE
T ss_pred             EEEECCCccccccchhHHHHHHHHHHHhc-CCCcEEEEE
Confidence            999977 22    12      56677777 888888665

...

>PRK12935 acetoacetyl-CoA reductase; Provisional

Probab=95.09  E-value=0.15  Score=43.91  Aligned_cols=81  Identities=17%  Similarity=0.142  Sum_probs=49.0

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeC-CcchHHHH----HhcCCcEE---EEcCCchhHHHHHHHHhC-CC
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCN-SEDKTDLI----RQKGAWAA---LTFTNEKSLVNKVLEVSG-GK  231 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~-~~~~~~~~----~~~g~~~~---~~~~~~~~~~~~i~~~~~-~~  231 (296)
                      ++++++|+|++|++|..++..+ ...|++|+++.+ ++++.+.+    ++.+....   .+..+.....+.+.+... -.
T Consensus         5 ~~~~~lItG~s~~iG~~la~~l-~~~g~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~   83 (247)
T PRK12935          5 NGKVAIVTGGAKGIGKAITVAL-AQEGAKVVINYNSSKEAAENLVNELGKEGHDVYAVQADVSKVEDANRLVEEAVNHFG   83 (247)
T ss_pred             CCCEEEEECCCCHHHHHHHHHH-HHcCCEEEEEcCCcHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence            4789999999999999988877 447999887654 33333222    23343222   223332333333333321 12


Q ss_pred             cccEEEECCCC
Q psy1959         232 YANVVFEAVGG  242 (296)
Q Consensus       232 g~d~vld~~g~  242 (296)
                      .+|+++.+.|.
T Consensus        84 ~id~vi~~ag~   94 (247)
T PRK12935         84 KVDILVNNAGI   94 (247)
T ss_pred             CCCEEEECCCC
Confidence            58999999885

>COG2910 Putative NADH-flavin reductase [General function prediction only]

Probab=95.08  E-value=0.073  Score=44.20  Aligned_cols=71  Identities=14%  Similarity=0.130  Sum_probs=49.6

Q ss_pred             EEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCcEEEEcCCchhHHHHHHHHhCCCcccEEEECCCC
Q psy1959         164 TVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNKVLEVSGGKYANVVFEAVGG  242 (296)
Q Consensus       164 ~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~g~d~vld~~g~  242 (296)
                      +|.|+|++|-+|...++-| +..|-.|++++++++|+...+..-    +...+..+.......+   .|+|+||++.|.
T Consensus         2 KIaiIgAsG~~Gs~i~~EA-~~RGHeVTAivRn~~K~~~~~~~~----i~q~Difd~~~~a~~l---~g~DaVIsA~~~   72 (211)
T COG2910           2 KIAIIGASGKAGSRILKEA-LKRGHEVTAIVRNASKLAARQGVT----ILQKDIFDLTSLASDL---AGHDAVISAFGA   72 (211)
T ss_pred             eEEEEecCchhHHHHHHHH-HhCCCeeEEEEeChHhccccccce----eecccccChhhhHhhh---cCCceEEEeccC
Confidence            5889999999999999999 668999999999999987642221    1111112222221222   489999999885

>PRK07985 oxidoreductase; Provisional

Probab=95.08  E-value=0.17  Score=45.42  Aligned_cols=81  Identities=20%  Similarity=0.114  Sum_probs=49.9

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCc--chHHHHH----hcCCcEE---EEcCCchhHHHHHHHHhC-C
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSE--DKTDLIR----QKGAWAA---LTFTNEKSLVNKVLEVSG-G  230 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~--~~~~~~~----~~g~~~~---~~~~~~~~~~~~i~~~~~-~  230 (296)
                      ++++++|+|+++++|.++++.+ ...|++|+++.++.  ++.+.+.    +.+....   .+..+..+..+.+.+... .
T Consensus        48 ~~k~vlITGas~gIG~aia~~L-~~~G~~Vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~  126 (294)
T PRK07985         48 KDRKALVTGGDSGIGRAAAIAY-AREGADVAISYLPVEEEDAQDVKKIIEECGRKAVLLPGDLSDEKFARSLVHEAHKAL  126 (294)
T ss_pred             CCCEEEEECCCCcHHHHHHHHH-HHCCCEEEEecCCcchhhHHHHHHHHHHcCCeEEEEEccCCCHHHHHHHHHHHHHHh
Confidence            5689999999999999988877 45799999876543  2333332    2333221   233332333333333321 2


Q ss_pred             CcccEEEECCCC
Q psy1959         231 KYANVVFEAVGG  242 (296)
Q Consensus       231 ~g~d~vld~~g~  242 (296)
                      .++|+++.+.|.
T Consensus       127 g~id~lv~~Ag~  138 (294)
T PRK07985        127 GGLDIMALVAGK  138 (294)
T ss_pred             CCCCEEEECCCC
Confidence            368999998873

>PRK08936 glucose-1-dehydrogenase; Provisional

Probab=95.05  E-value=0.19  Score=43.83  Aligned_cols=81  Identities=26%  Similarity=0.235  Sum_probs=49.9

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcc-hHH----HHHhcCCcEE---EEcCCchhHHHHHHHHhC-CC
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSED-KTD----LIRQKGAWAA---LTFTNEKSLVNKVLEVSG-GK  231 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~-~~~----~~~~~g~~~~---~~~~~~~~~~~~i~~~~~-~~  231 (296)
                      ++++++|+|++|++|..+++.+ ...|++|+++.++.. +..    .++..+....   .+..+..+..+.+.+... ..
T Consensus         6 ~~k~~lItGa~~gIG~~ia~~l-~~~G~~vvi~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~i~~~~~~~~~~~g   84 (261)
T PRK08936          6 EGKVVVITGGSTGLGRAMAVRF-GKEKAKVVINYRSDEEEANDVAEEIKKAGGEAIAVKGDVTVESDVVNLIQTAVKEFG   84 (261)
T ss_pred             CCCEEEEeCCCChHHHHHHHHH-HHCCCEEEEEeCCCHHHHHHHHHHHHHcCCeEEEEEecCCCHHHHHHHHHHHHHHcC
Confidence            5789999999999999988877 457999888776432 222    2222333221   233332333333333221 23


Q ss_pred             cccEEEECCCC
Q psy1959         232 YANVVFEAVGG  242 (296)
Q Consensus       232 g~d~vld~~g~  242 (296)
                      .+|+++.+.|.
T Consensus        85 ~id~lv~~ag~   95 (261)
T PRK08936         85 TLDVMINNAGI   95 (261)
T ss_pred             CCCEEEECCCC
Confidence            68999999884

>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]

Probab=95.03  E-value=0.18  Score=43.60  Aligned_cols=96  Identities=18%  Similarity=0.201  Sum_probs=65.8

Q ss_pred             CCCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCcEE--EEcCCchhHHHHHHHHhCCCcccEEE
Q psy1959         160 KEKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAA--LTFTNEKSLVNKVLEVSGGKYANVVF  237 (296)
Q Consensus       160 ~~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~~~--~~~~~~~~~~~~i~~~~~~~g~d~vl  237 (296)
                      -+|.+||=.|+.|  |+++..+| + .|++|+.+|-+++-.+.++......-  ++|..  ...+.+.+.  +..+|+|+
T Consensus        58 l~g~~vLDvGCGg--G~Lse~mA-r-~Ga~VtgiD~se~~I~~Ak~ha~e~gv~i~y~~--~~~edl~~~--~~~FDvV~  129 (243)
T COG2227          58 LPGLRVLDVGCGG--GILSEPLA-R-LGASVTGIDASEKPIEVAKLHALESGVNIDYRQ--ATVEDLASA--GGQFDVVT  129 (243)
T ss_pred             CCCCeEEEecCCc--cHhhHHHH-H-CCCeeEEecCChHHHHHHHHhhhhccccccchh--hhHHHHHhc--CCCccEEE
Confidence            3788898889833  68888888 4 69999999999998888775432221  34433  222333322  35899998


Q ss_pred             E-----CCCC--ccHHHHHHHhhccCceEEeecc
Q psy1959         238 E-----AVGG--EDKTDLIRQKGAWAALTFTNEK  264 (296)
Q Consensus       238 d-----~~g~--~~~~~~~~~lg~~~g~~~~~~~  264 (296)
                      +     -+-.  ..+..+.+++ +++|..+++..
T Consensus       130 cmEVlEHv~dp~~~~~~c~~lv-kP~G~lf~STi  162 (243)
T COG2227         130 CMEVLEHVPDPESFLRACAKLV-KPGGILFLSTI  162 (243)
T ss_pred             EhhHHHccCCHHHHHHHHHHHc-CCCcEEEEecc
Confidence            7     3444  3577788888 99999877664

>PRK05855 short chain dehydrogenase; Validated

Probab=95.03  E-value=0.11  Score=50.84  Aligned_cols=81  Identities=20%  Similarity=0.187  Sum_probs=53.4

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHH----hcCCcEE---EEcCCchhHHHHHHHHhC-CCc
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIR----QKGAWAA---LTFTNEKSLVNKVLEVSG-GKY  232 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~----~~g~~~~---~~~~~~~~~~~~i~~~~~-~~g  232 (296)
                      .+.+++|+|++|++|.+.++.+ ...|++|+++++++++.+.+.    +.|....   .+..+.....+.+.+... ...
T Consensus       314 ~~~~~lv~G~s~giG~~~a~~l-~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~g~  392 (582)
T PRK05855        314 SGKLVVVTGAGSGIGRETALAF-AREGAEVVASDIDEAAAERTAELIRAAGAVAHAYRVDVSDADAMEAFAEWVRAEHGV  392 (582)
T ss_pred             CCCEEEEECCcCHHHHHHHHHH-HHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHhcCC
Confidence            4688999999999999877777 457999999999887765443    2343222   233332333333333321 236


Q ss_pred             ccEEEECCCC
Q psy1959         233 ANVVFEAVGG  242 (296)
Q Consensus       233 ~d~vld~~g~  242 (296)
                      +|+++++.|.
T Consensus       393 id~lv~~Ag~  402 (582)
T PRK05855        393 PDIVVNNAGI  402 (582)
T ss_pred             CcEEEECCcc
Confidence            8999999985

>PRK08220 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated

Probab=95.03  E-value=0.13  Score=44.51  Aligned_cols=76  Identities=25%  Similarity=0.207  Sum_probs=48.7

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCcEE---EEcCCchhHHHHHHHHhC-CCcccEE
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAA---LTFTNEKSLVNKVLEVSG-GKYANVV  236 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~~~---~~~~~~~~~~~~i~~~~~-~~g~d~v  236 (296)
                      ++++++|+|++|++|+..++.+ ...|++|++++++.     +...+....   .+..+...+.+.+.+... ...+|++
T Consensus         7 ~~k~vlItGas~~iG~~la~~l-~~~G~~v~~~~~~~-----~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~v   80 (252)
T PRK08220          7 SGKTVWVTGAAQGIGYAVALAF-VEAGAKVIGFDQAF-----LTQEDYPFATFVLDVSDAAAVAQVCQRLLAETGPLDVL   80 (252)
T ss_pred             CCCEEEEeCCCchHHHHHHHHH-HHCCCEEEEEecch-----hhhcCCceEEEEecCCCHHHHHHHHHHHHHHcCCCCEE
Confidence            4689999999999999988877 44799999998765     222222211   233332333333333321 1358999


Q ss_pred             EECCCC
Q psy1959         237 FEAVGG  242 (296)
Q Consensus       237 ld~~g~  242 (296)
                      +.+.|.
T Consensus        81 i~~ag~   86 (252)
T PRK08220         81 VNAAGI   86 (252)
T ss_pred             EECCCc
Confidence            999885

>PRK06077 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=95.03  E-value=0.15  Score=44.00  Aligned_cols=81  Identities=14%  Similarity=0.186  Sum_probs=47.8

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCc-chH----HHHHhcCCcEE---EEcCCchhHHHHHHHHhC-CC
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSE-DKT----DLIRQKGAWAA---LTFTNEKSLVNKVLEVSG-GK  231 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~-~~~----~~~~~~g~~~~---~~~~~~~~~~~~i~~~~~-~~  231 (296)
                      .+.+++|+|++|++|.+.++-+ ...|++|+...++. ++.    ..+++.+....   .+..+..+....+.+... -.
T Consensus         5 ~~~~vlitGasg~iG~~l~~~l-~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~   83 (252)
T PRK06077          5 KDKVVVVTGSGRGIGRAIAVRL-AKEGSLVVVNAKKRAEEMNETLKMVKENGGEGIGVLADVSTREGCETLAKATIDRYG   83 (252)
T ss_pred             CCcEEEEeCCCChHHHHHHHHH-HHCCCEEEEEeCCChHHHHHHHHHHHHcCCeeEEEEeccCCHHHHHHHHHHHHHHcC
Confidence            3679999999999999887766 34799987766432 222    22233333222   233332333333333211 13


Q ss_pred             cccEEEECCCC
Q psy1959         232 YANVVFEAVGG  242 (296)
Q Consensus       232 g~d~vld~~g~  242 (296)
                      .+|++|.+.|.
T Consensus        84 ~~d~vi~~ag~   94 (252)
T PRK06077         84 VADILVNNAGL   94 (252)
T ss_pred             CCCEEEECCCC
Confidence            68999999984

>PRK09134 short chain dehydrogenase; Provisional

Probab=95.01  E-value=0.21  Score=43.58  Aligned_cols=81  Identities=19%  Similarity=0.124  Sum_probs=49.2

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCC-cchHHHH----HhcCCcEE---EEcCCchhHHHHHHHHhC-CC
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNS-EDKTDLI----RQKGAWAA---LTFTNEKSLVNKVLEVSG-GK  231 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~-~~~~~~~----~~~g~~~~---~~~~~~~~~~~~i~~~~~-~~  231 (296)
                      .+++++|+|++|++|..+++.+ ...|++|+.+++. .++.+.+    +..+....   .+..+..+..+.+.+... ..
T Consensus         8 ~~k~vlItGas~giG~~la~~l-~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~~~~   86 (258)
T PRK09134          8 APRAALVTGAARRIGRAIALDL-AAHGFDVAVHYNRSRDEAEALAAEIRALGRRAVALQADLADEAEVRALVARASAALG   86 (258)
T ss_pred             CCCEEEEeCCCcHHHHHHHHHH-HHCCCEEEEEeCCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence            4678999999999999988777 4479999887654 3333322    22233221   233332333333333321 23


Q ss_pred             cccEEEECCCC
Q psy1959         232 YANVVFEAVGG  242 (296)
Q Consensus       232 g~d~vld~~g~  242 (296)
                      .+|+++.+.|.
T Consensus        87 ~iD~vi~~ag~   97 (258)
T PRK09134         87 PITLLVNNASL   97 (258)
T ss_pred             CCCEEEECCcC
Confidence            68999999874

>TIGR00438 rrmJ cell division protein FtsJ

Probab=94.97  E-value=0.46  Score=39.59  Aligned_cols=99  Identities=20%  Similarity=0.077  Sum_probs=59.6

Q ss_pred             HHcCCCCCcEEEEEcCCCcHHHHHHHHHHHh-CCCEEEEEeCCcchHHHHHhcCCcEE-EEcCCchhHHHHHHHHhCCCc
Q psy1959         155 RHAKLKEKQTVLVTAAGGGLGLAAVDMATKI-YKAKVIGVCNSEDKTDLIRQKGAWAA-LTFTNEKSLVNKVLEVSGGKY  232 (296)
Q Consensus       155 ~~~~~~~g~~vlI~Ga~g~vG~aa~~la~~~-~g~~Vi~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~i~~~~~~~g  232 (296)
                      +...+++|++||.+|+ |. |..+..++++. ...+|++++.++..    ...++... .+..+ ....+.+.+.....+
T Consensus        26 ~~~~i~~g~~VLDiG~-Gt-G~~~~~l~~~~~~~~~v~~vDis~~~----~~~~i~~~~~d~~~-~~~~~~l~~~~~~~~   98 (188)
T TIGR00438        26 KFKLIKPGDTVLDLGA-AP-GGWSQVAVEQVGGKGRVIAVDLQPMK----PIENVDFIRGDFTD-EEVLNKIRERVGDDK   98 (188)
T ss_pred             HhcccCCCCEEEEecC-CC-CHHHHHHHHHhCCCceEEEEeccccc----cCCCceEEEeeCCC-hhHHHHHHHHhCCCC
Confidence            3556789999999997 44 33444444333 24589999988754    11233222 23322 333445555555668


Q ss_pred             ccEEEEC-----CCC-------------ccHHHHHHHhhccCceEEe
Q psy1959         233 ANVVFEA-----VGG-------------EDKTDLIRQKGAWAALTFT  261 (296)
Q Consensus       233 ~d~vld~-----~g~-------------~~~~~~~~~lg~~~g~~~~  261 (296)
                      +|+|+..     .|.             ..+..+.+.| +++|.+.+
T Consensus        99 ~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~L-kpgG~lvi  144 (188)
T TIGR00438        99 VDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVL-KPKGNFVV  144 (188)
T ss_pred             ccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHc-cCCCEEEE
Confidence            9999963     221             2456677888 88888865

>TIGR02415 23BDH acetoin reductases

Probab=94.91  E-value=0.14  Score=44.28  Aligned_cols=79  Identities=16%  Similarity=0.151  Sum_probs=49.7

Q ss_pred             cEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHH----HhcCCcEE---EEcCCchhHHHHHHHHhC-CCccc
Q psy1959         163 QTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLI----RQKGAWAA---LTFTNEKSLVNKVLEVSG-GKYAN  234 (296)
Q Consensus       163 ~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~----~~~g~~~~---~~~~~~~~~~~~i~~~~~-~~g~d  234 (296)
                      ++++|.|++|++|...++.+ ...|++|+.+.+++++...+    +..+....   .+..+..+..+.+.+... ...+|
T Consensus         1 k~~lItG~sg~iG~~la~~l-~~~G~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~i~~~~~~~~~~~~~id   79 (254)
T TIGR02415         1 KVALVTGGAQGIGKGIAERL-AKDGFAVAVADLNEETAKETAKEINQAGGKAVAYKLDVSDKDQVFSAIDQAAEKFGGFD   79 (254)
T ss_pred             CEEEEeCCCchHHHHHHHHH-HHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHcCCCC
Confidence            36899999999999988887 45799999999876654332    22333221   233332333333333321 12689


Q ss_pred             EEEECCCC
Q psy1959         235 VVFEAVGG  242 (296)
Q Consensus       235 ~vld~~g~  242 (296)
                      +++.+.|.
T Consensus        80 ~vi~~ag~   87 (254)
T TIGR02415        80 VMVNNAGV   87 (254)
T ss_pred             EEEECCCc
Confidence            99999874

One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PubMed:11577733).

>PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=94.85  E-value=0.17  Score=43.40  Aligned_cols=81  Identities=21%  Similarity=0.182  Sum_probs=48.6

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcch-HHHH----HhcCCcEE---EEcCCchhHHHHHHHHhC-CC
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDK-TDLI----RQKGAWAA---LTFTNEKSLVNKVLEVSG-GK  231 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~-~~~~----~~~g~~~~---~~~~~~~~~~~~i~~~~~-~~  231 (296)
                      +.++++|+|++|.+|..+++.+ ...|.+|+++.++..+ .+.+    ...+....   .+..+..++.+.+.+... ..
T Consensus         5 ~~~~vlItGasg~iG~~l~~~l-~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~   83 (249)
T PRK12825          5 MGRVALVTGAARGLGRAIALRL-ARAGADVVVHYRSDEEAAEELVEAVEALGRRAQAVQADVTDKAALEAAVAAAVERFG   83 (249)
T ss_pred             CCCEEEEeCCCchHHHHHHHHH-HHCCCeEEEEeCCCHHHHHHHHHHHHhcCCceEEEECCcCCHHHHHHHHHHHHHHcC
Confidence            3568999999999999998887 4579998776665443 2222    22232221   223332333333333311 23


Q ss_pred             cccEEEECCCC
Q psy1959         232 YANVVFEAVGG  242 (296)
Q Consensus       232 g~d~vld~~g~  242 (296)
                      ++|+++.+.|.
T Consensus        84 ~id~vi~~ag~   94 (249)
T PRK12825         84 RIDILVNNAGI   94 (249)
T ss_pred             CCCEEEECCcc
Confidence            68999999883

>PRK07023 short chain dehydrogenase; Provisional

Probab=94.84  E-value=0.14  Score=44.15  Aligned_cols=77  Identities=19%  Similarity=0.236  Sum_probs=47.6

Q ss_pred             EEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCcEE---EEcCCchhHHHHHHH----H-hCCCcccE
Q psy1959         164 TVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAA---LTFTNEKSLVNKVLE----V-SGGKYANV  235 (296)
Q Consensus       164 ~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~~~---~~~~~~~~~~~~i~~----~-~~~~g~d~  235 (296)
                      +++|+|++|++|..+++.+ ...|++|++++++.++.. ....+....   .+..+..+....+.+    . .....+|.
T Consensus         3 ~vlItGasggiG~~ia~~l-~~~G~~v~~~~r~~~~~~-~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (243)
T PRK07023          3 RAIVTGHSRGLGAALAEQL-LQPGIAVLGVARSRHPSL-AAAAGERLAEVELDLSDAAAAAAWLAGDLLAAFVDGASRVL   80 (243)
T ss_pred             eEEEecCCcchHHHHHHHH-HhCCCEEEEEecCcchhh-hhccCCeEEEEEeccCCHHHHHHHHHHHHHHHhccCCCceE
Confidence            6899999999999988887 447999999988765422 222332221   233332333332322    1 12236889


Q ss_pred             EEECCCC
Q psy1959         236 VFEAVGG  242 (296)
Q Consensus       236 vld~~g~  242 (296)
                      ++.+.|.
T Consensus        81 ~v~~ag~   87 (243)
T PRK07023         81 LINNAGT   87 (243)
T ss_pred             EEEcCcc
Confidence            9998874

>KOG1210|consensus

Probab=94.83  E-value=0.17  Score=45.39  Aligned_cols=86  Identities=21%  Similarity=0.129  Sum_probs=56.8

Q ss_pred             HcCCCCCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHh-cCC----cEEEEcC-Cc---hhHHHHHHH
Q psy1959         156 HAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQ-KGA----WAALTFT-NE---KSLVNKVLE  226 (296)
Q Consensus       156 ~~~~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~-~g~----~~~~~~~-~~---~~~~~~i~~  226 (296)
                      ..+.++-..++|.|++.++|++....+ +..|++|.++.++.+|+..++. +..    ..+.... +.   +.....+.+
T Consensus        27 ~~~~k~~~hi~itggS~glgl~la~e~-~~~ga~Vti~ar~~~kl~~a~~~l~l~~~~~~v~~~S~d~~~Y~~v~~~~~~  105 (331)
T KOG1210|consen   27 IVKPKPRRHILITGGSSGLGLALALEC-KREGADVTITARSGKKLLEAKAELELLTQVEDVSYKSVDVIDYDSVSKVIEE  105 (331)
T ss_pred             hcccCccceEEEecCcchhhHHHHHHH-HHccCceEEEeccHHHHHHHHhhhhhhhccceeeEeccccccHHHHHHHHhh
Confidence            344556689999999999999999999 6689999999999999988764 322    1111111 10   112222322


Q ss_pred             HhC-CCcccEEEECCCC
Q psy1959         227 VSG-GKYANVVFEAVGG  242 (296)
Q Consensus       227 ~~~-~~g~d~vld~~g~  242 (296)
                      +-. ..-+|.+|+|.|.
T Consensus       106 l~~~~~~~d~l~~cAG~  122 (331)
T KOG1210|consen  106 LRDLEGPIDNLFCCAGV  122 (331)
T ss_pred             hhhccCCcceEEEecCc
Confidence            211 1257999999985

>PRK12744 short chain dehydrogenase; Provisional

Probab=94.81  E-value=0.19  Score=43.72  Aligned_cols=81  Identities=15%  Similarity=0.190  Sum_probs=48.3

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCc----chHHH----HHhcCCcEE---EEcCCchhHHHHHHHHhC
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSE----DKTDL----IRQKGAWAA---LTFTNEKSLVNKVLEVSG  229 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~----~~~~~----~~~~g~~~~---~~~~~~~~~~~~i~~~~~  229 (296)
                      .+++++|+|++|++|.+.++.+ ...|++|+++.++.    ++.+.    ++..+....   .+..+..+..+.+.+...
T Consensus         7 ~~k~vlItGa~~gIG~~~a~~l-~~~G~~vv~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~   85 (257)
T PRK12744          7 KGKVVLIAGGAKNLGGLIARDL-AAQGAKAVAIHYNSAASKADAEETVAAVKAAGAKAVAFQADLTTAAAVEKLFDDAKA   85 (257)
T ss_pred             CCcEEEEECCCchHHHHHHHHH-HHCCCcEEEEecCCccchHHHHHHHHHHHHhCCcEEEEecCcCCHHHHHHHHHHHHH
Confidence            4679999999999999988888 45799977665432    22221    222343221   233332333333333321


Q ss_pred             -CCcccEEEECCCC
Q psy1959         230 -GKYANVVFEAVGG  242 (296)
Q Consensus       230 -~~g~d~vld~~g~  242 (296)
                       ...+|+++.+.|.
T Consensus        86 ~~~~id~li~~ag~   99 (257)
T PRK12744         86 AFGRPDIAINTVGK   99 (257)
T ss_pred             hhCCCCEEEECCcc
Confidence             2368999999884

>PRK07069 short chain dehydrogenase; Validated

Probab=94.80  E-value=0.21  Score=43.03  Aligned_cols=77  Identities=21%  Similarity=0.149  Sum_probs=48.7

Q ss_pred             EEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCC-cchHHHHHh-c----CCcE----EEEcCCchhHHHHHHHHhC-CCcc
Q psy1959         165 VLVTAAGGGLGLAAVDMATKIYKAKVIGVCNS-EDKTDLIRQ-K----GAWA----ALTFTNEKSLVNKVLEVSG-GKYA  233 (296)
Q Consensus       165 vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~-~~~~~~~~~-~----g~~~----~~~~~~~~~~~~~i~~~~~-~~g~  233 (296)
                      ++|+|++|++|...++.+ ...|++|++++++ .++.+.+.+ +    +...    ..+..+.+.+.+.+.+... -.++
T Consensus         2 ilVtG~~~~iG~~~a~~l-~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i   80 (251)
T PRK07069          2 AFITGAAGGLGRAIARRM-AEQGAKVFLTDINDAAGLDAFAAEINAAHGEGVAFAAVQDVTDEAQWQALLAQAADAMGGL   80 (251)
T ss_pred             EEEECCCChHHHHHHHHH-HHCCCEEEEEeCCcchHHHHHHHHHHhcCCCceEEEEEeecCCHHHHHHHHHHHHHHcCCc
Confidence            799999999999988877 4479999999987 555544332 1    2111    1234443444444433321 2368


Q ss_pred             cEEEECCCC
Q psy1959         234 NVVFEAVGG  242 (296)
Q Consensus       234 d~vld~~g~  242 (296)
                      |+++.+.|.
T Consensus        81 d~vi~~ag~   89 (251)
T PRK07069         81 SVLVNNAGV   89 (251)
T ss_pred             cEEEECCCc
Confidence            999999884

>PRK05447 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional

Probab=94.78  E-value=0.34  Score=45.08  Aligned_cols=97  Identities=11%  Similarity=0.127  Sum_probs=63.8

Q ss_pred             cEEEEEcCCCcHHHHHHHHHHHhC-CCEEEEEe--CCcchH-HHHHhcCCcEEEEcCCchhH-----------------H
Q psy1959         163 QTVLVTAAGGGLGLAAVDMATKIY-KAKVIGVC--NSEDKT-DLIRQKGAWAALTFTNEKSL-----------------V  221 (296)
Q Consensus       163 ~~vlI~Ga~g~vG~aa~~la~~~~-g~~Vi~~~--~~~~~~-~~~~~~g~~~~~~~~~~~~~-----------------~  221 (296)
                      ++|.|.|++|++|..++...++.. .++|++++  ++.+++ +.++++++..+...++ ...                 .
T Consensus         2 k~VaILGsTGSIG~~tL~vi~~~p~~f~VvaLaa~~n~~~l~~q~~~f~p~~v~i~~~-~~~~~l~~~l~~~~~~v~~G~   80 (385)
T PRK05447          2 KRITILGSTGSIGTQTLDVIRRNPDRFRVVALSAGKNVELLAEQAREFRPKYVVVADE-EAAKELKEALAAAGIEVLAGE   80 (385)
T ss_pred             ceEEEEcCChHHHHHHHHHHHhCccccEEEEEEcCCCHHHHHHHHHHhCCCEEEEcCH-HHHHHHHHhhccCCceEEECh
Confidence            579999999999999999885432 56888776  333343 3455678766655433 111                 1


Q ss_pred             HHHHHHhCCCcccEEEECCCC-ccHHHHHHHhhccCceEEe
Q psy1959         222 NKVLEVSGGKYANVVFEAVGG-EDKTDLIRQKGAWAALTFT  261 (296)
Q Consensus       222 ~~i~~~~~~~g~d~vld~~g~-~~~~~~~~~lg~~~g~~~~  261 (296)
                      +.+.++.....+|+|+.++.+ ..+...+.++ +.|-.+.+
T Consensus        81 ~~~~~l~~~~~vD~Vv~Ai~G~aGl~ptl~Ai-~aGK~VaL  120 (385)
T PRK05447         81 EGLCELAALPEADVVVAAIVGAAGLLPTLAAI-RAGKRIAL  120 (385)
T ss_pred             hHHHHHhcCCCCCEEEEeCcCcccHHHHHHHH-HCCCcEEE
Confidence            122233333469999999988 6888888888 66655533

>PLN02653 GDP-mannose 4,6-dehydratase

Probab=94.74  E-value=0.12  Score=47.16  Aligned_cols=37  Identities=16%  Similarity=0.185  Sum_probs=31.4

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcc
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSED  198 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~  198 (296)
                      ++++|||+|++|.+|...++.+ ...|.+|+++++..+
T Consensus         5 ~~~~vlVTGatGfiG~~l~~~L-~~~G~~V~~~~r~~~   41 (340)
T PLN02653          5 PRKVALITGITGQDGSYLTEFL-LSKGYEVHGIIRRSS   41 (340)
T ss_pred             CCCEEEEECCCCccHHHHHHHH-HHCCCEEEEEecccc
Confidence            4688999999999999988888 457999999887643

>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=94.70  E-value=0.55  Score=42.87  Aligned_cols=99  Identities=18%  Similarity=0.125  Sum_probs=66.1

Q ss_pred             HHcCCCCCcEEEEEcCCCcHHHHHHHHHHHhCC--CEEEEEeCCcchHHHHHh----cCCcEEEEcCCchhHHHHHHHHh
Q psy1959         155 RHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYK--AKVIGVCNSEDKTDLIRQ----KGAWAALTFTNEKSLVNKVLEVS  228 (296)
Q Consensus       155 ~~~~~~~g~~vlI~Ga~g~vG~aa~~la~~~~g--~~Vi~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~~~i~~~~  228 (296)
                      +...++++++||-.|+ | .|..++.+++ ..+  ..|+.++.+++..+.+++    .|.+.+.....  +..+.+.   
T Consensus        74 ~~L~i~~g~~VLDIG~-G-tG~~a~~LA~-~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~g--D~~~~~~---  145 (322)
T PRK13943         74 EWVGLDKGMRVLEIGG-G-TGYNAAVMSR-VVGEKGLVVSVEYSRKICEIAKRNVRRLGIENVIFVCG--DGYYGVP---  145 (322)
T ss_pred             HhcCCCCCCEEEEEeC-C-ccHHHHHHHH-hcCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeC--Chhhccc---
Confidence            4567889999999996 5 5999999994 454  379999999886665543    56543322221  2222111   


Q ss_pred             CCCcccEEEECCCC-ccHHHHHHHhhccCceEEee
Q psy1959         229 GGKYANVVFEAVGG-EDKTDLIRQKGAWAALTFTN  262 (296)
Q Consensus       229 ~~~g~d~vld~~g~-~~~~~~~~~lg~~~g~~~~~  262 (296)
                      ....+|+++.+.+. ......++.+ +.+|.+.+.
T Consensus       146 ~~~~fD~Ii~~~g~~~ip~~~~~~L-kpgG~Lvv~  179 (322)
T PRK13943        146 EFAPYDVIFVTVGVDEVPETWFTQL-KEGGRVIVP  179 (322)
T ss_pred             ccCCccEEEECCchHHhHHHHHHhc-CCCCEEEEE
Confidence            12369999998886 4555678888 888887554

>PRK12859 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=94.68  E-value=0.24  Score=43.16  Aligned_cols=81  Identities=15%  Similarity=0.209  Sum_probs=48.5

Q ss_pred             CCcEEEEEcCC--CcHHHHHHHHHHHhCCCEEEEEeCC-----------cchH----HHHHhcCCcEE---EEcCCchhH
Q psy1959         161 EKQTVLVTAAG--GGLGLAAVDMATKIYKAKVIGVCNS-----------EDKT----DLIRQKGAWAA---LTFTNEKSL  220 (296)
Q Consensus       161 ~g~~vlI~Ga~--g~vG~aa~~la~~~~g~~Vi~~~~~-----------~~~~----~~~~~~g~~~~---~~~~~~~~~  220 (296)
                      +|++++|+|++  +++|.+.+..+ ...|++|++++++           .++.    +.+++.|....   .+..+.++.
T Consensus         5 ~~k~vlVtGas~~~giG~~~a~~l-~~~G~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~D~~~~~~i   83 (256)
T PRK12859          5 KNKVAVVTGVSRLDGIGAAICKEL-AEAGADIFFTYWTAYDKEMPWGVDQDEQIQLQEELLKNGVKVSSMELDLTQNDAP   83 (256)
T ss_pred             CCcEEEEECCCCCCChHHHHHHHH-HHCCCeEEEEecccccccccccccHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHH
Confidence            57899999997  48999988777 4579999887532           1111    22333454322   233332344


Q ss_pred             HHHHHHHhC-CCcccEEEECCCC
Q psy1959         221 VNKVLEVSG-GKYANVVFEAVGG  242 (296)
Q Consensus       221 ~~~i~~~~~-~~g~d~vld~~g~  242 (296)
                      .+.+.+... ...+|+++.+.|.
T Consensus        84 ~~~~~~~~~~~g~id~li~~ag~  106 (256)
T PRK12859         84 KELLNKVTEQLGYPHILVNNAAY  106 (256)
T ss_pred             HHHHHHHHHHcCCCcEEEECCCC
Confidence            444443321 1258999999874

>PLN02986 cinnamyl-alcohol dehydrogenase family protein

Probab=94.65  E-value=0.17  Score=45.74  Aligned_cols=40  Identities=18%  Similarity=0.091  Sum_probs=32.7

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHH
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTD  201 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~  201 (296)
                      .|++|+|+|++|.+|..+++.+ ...|.+|+++.++.++.+
T Consensus         4 ~~~~vlVTGatG~iG~~l~~~L-~~~g~~V~~~~r~~~~~~   43 (322)
T PLN02986          4 GGKLVCVTGASGYIASWIVKLL-LLRGYTVKATVRDLTDRK   43 (322)
T ss_pred             CCCEEEEECCCcHHHHHHHHHH-HHCCCEEEEEECCCcchH
Confidence            5789999999999999988877 447999998887766543

>TIGR01472 gmd GDP-mannose 4,6-dehydratase

Probab=94.62  E-value=0.18  Score=46.04  Aligned_cols=35  Identities=17%  Similarity=0.149  Sum_probs=30.0

Q ss_pred             cEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcc
Q psy1959         163 QTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSED  198 (296)
Q Consensus       163 ~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~  198 (296)
                      ++|||+|++|.+|..+++.+ ...|.+|++++++.+
T Consensus         1 ~~vlVTGatGfIG~~l~~~L-~~~G~~V~~~~r~~~   35 (343)
T TIGR01472         1 KIALITGITGQDGSYLAEFL-LEKGYEVHGLIRRSS   35 (343)
T ss_pred             CeEEEEcCCCcHHHHHHHHH-HHCCCEEEEEecCCc
Confidence            47999999999999999888 457999999988654

Excluded from this model are members of the clade that score poorly because of highly dervied (phylogenetically long-branch) sequences, e.g. Aneurinibacillus thermoaerophilus Gmd, described as a bifunctional GDP-mannose 4,6-dehydratase/GDP-6-deoxy-D-lyxo-4-hexulose reductase (PUBMED:11096116).

>COG4122 Predicted O-methyltransferase [General function prediction only]

Probab=94.57  E-value=0.51  Score=40.56  Aligned_cols=104  Identities=13%  Similarity=0.146  Sum_probs=71.8

Q ss_pred             HHcCCCCCcEEEEEcCCCcHHHHHHHHHHHhC-CCEEEEEeCCcchHHHHHhc----CCcEE-EEcCCchhHHHHHHHHh
Q psy1959         155 RHAKLKEKQTVLVTAAGGGLGLAAVDMATKIY-KAKVIGVCNSEDKTDLIRQK----GAWAA-LTFTNEKSLVNKVLEVS  228 (296)
Q Consensus       155 ~~~~~~~g~~vlI~Ga~g~vG~aa~~la~~~~-g~~Vi~~~~~~~~~~~~~~~----g~~~~-~~~~~~~~~~~~i~~~~  228 (296)
                      ..++.+..++++=+|  +.+|+.++.+|..+. ..+++.++.++++.+.+++.    |.+.. ..... .+..+.+.+ .
T Consensus        53 ~L~~~~~~k~iLEiG--T~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~-gdal~~l~~-~  128 (219)
T COG4122          53 LLARLSGPKRILEIG--TAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLG-GDALDVLSR-L  128 (219)
T ss_pred             HHHHhcCCceEEEee--cccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEec-CcHHHHHHh-c
Confidence            345566778888887  778999999995544 46899999999998888653    65542 22221 244555554 2


Q ss_pred             CCCcccEEEECCCC----ccHHHHHHHhhccCceEEeec
Q psy1959         229 GGKYANVVFEAVGG----EDKTDLIRQKGAWAALTFTNE  263 (296)
Q Consensus       229 ~~~g~d~vld~~g~----~~~~~~~~~lg~~~g~~~~~~  263 (296)
                      ....+|++|--..-    ..++.++++| ++||.+.++.
T Consensus       129 ~~~~fDliFIDadK~~yp~~le~~~~lL-r~GGliv~DN  166 (219)
T COG4122         129 LDGSFDLVFIDADKADYPEYLERALPLL-RPGGLIVADN  166 (219)
T ss_pred             cCCCccEEEEeCChhhCHHHHHHHHHHh-CCCcEEEEee
Confidence            24579977765443    4688999999 9999886543

>TIGR00507 aroE shikimate 5-dehydrogenase

Probab=94.55  E-value=0.35  Score=42.90  Aligned_cols=71  Identities=20%  Similarity=0.218  Sum_probs=47.1

Q ss_pred             CCCCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHh-c---CCcEEEEcCCchhHHHHHHHHhCCCccc
Q psy1959         159 LKEKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQ-K---GAWAALTFTNEKSLVNKVLEVSGGKYAN  234 (296)
Q Consensus       159 ~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~-~---g~~~~~~~~~~~~~~~~i~~~~~~~g~d  234 (296)
                      ..++++++|.|+ |+.|.+++..+ ...|++|++.++++++.+.+.+ +   +.......      .+    . ....+|
T Consensus       114 ~~~~k~vliiGa-Gg~g~aia~~L-~~~g~~v~v~~R~~~~~~~la~~~~~~~~~~~~~~------~~----~-~~~~~D  180 (270)
T TIGR00507       114 LRPNQRVLIIGA-GGAARAVALPL-LKADCNVIIANRTVSKAEELAERFQRYGEIQAFSM------DE----L-PLHRVD  180 (270)
T ss_pred             CccCCEEEEEcC-cHHHHHHHHHH-HHCCCEEEEEeCCHHHHHHHHHHHhhcCceEEech------hh----h-cccCcc
Confidence            346789999998 89999988777 4468899999998877655433 2   21111111      11    0 113589


Q ss_pred             EEEECCCC
Q psy1959         235 VVFEAVGG  242 (296)
Q Consensus       235 ~vld~~g~  242 (296)
                      ++++|++.
T Consensus       181 ivInatp~  188 (270)
T TIGR00507       181 LIINATSA  188 (270)
T ss_pred             EEEECCCC
Confidence            99999875

This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.

>TIGR02685 pter_reduc_Leis pteridine reductase

Probab=94.55  E-value=0.18  Score=44.34  Aligned_cols=38  Identities=13%  Similarity=0.080  Sum_probs=29.6

Q ss_pred             cEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCC-cchHH
Q psy1959         163 QTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNS-EDKTD  201 (296)
Q Consensus       163 ~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~-~~~~~  201 (296)
                      .+++|+|+++++|++.++.+ ...|++|+++.+. +++.+
T Consensus         2 ~~~lITGas~gIG~~~a~~l-~~~G~~V~~~~~~~~~~~~   40 (267)
T TIGR02685         2 PAAVVTGAAKRIGSSIAVAL-HQEGYRVVLHYHRSAAAAS   40 (267)
T ss_pred             CEEEEeCCCCcHHHHHHHHH-HhCCCeEEEEcCCcHHHHH
Confidence            47899999999999988887 4579999987643 34443

Pteridine reductase is an enzyme used by trypanosomatids (including Trypanosoma cruzi and Leishmania major) to obtain reduced pteridines by salvage rather than biosynthetic pathways. Enzymes in T. cruzi described as pteridine reductase 1 (PTR1) and pteridine reductase 2 (PTR2) have different activity profiles. PTR1 is more active with with fully oxidized biopterin and folate than with reduced forms, while PTR2 reduces dihydrobiopterin and dihydrofolate but not oxidized pteridines. T. cruzi PTR1 and PTR2 are more similar to each other in sequence than either is to the pteridine reductase of Leishmania major, and all are included in this family.

>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related

Probab=94.53  E-value=0.25  Score=40.98  Aligned_cols=45  Identities=24%  Similarity=0.279  Sum_probs=37.1

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcC
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKG  207 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g  207 (296)
                      .|++|.|+|. |.+|+.+++.+ +.+|++|++.+++........+.+
T Consensus        35 ~g~tvgIiG~-G~IG~~vA~~l-~~fG~~V~~~d~~~~~~~~~~~~~   79 (178)
T PF02826_consen   35 RGKTVGIIGY-GRIGRAVARRL-KAFGMRVIGYDRSPKPEEGADEFG   79 (178)
T ss_dssp             TTSEEEEEST-SHHHHHHHHHH-HHTT-EEEEEESSCHHHHHHHHTT
T ss_pred             CCCEEEEEEE-cCCcCeEeeee-ecCCceeEEecccCChhhhccccc
Confidence            6999999997 99999999999 689999999998877665444444

All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....

>PRK06947 glucose-1-dehydrogenase; Provisional

Probab=94.53  E-value=0.24  Score=42.73  Aligned_cols=79  Identities=20%  Similarity=0.160  Sum_probs=47.4

Q ss_pred             cEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEe-CCcchHHHH----HhcCCcEE---EEcCCchhHHHHHHHHhC-CCcc
Q psy1959         163 QTVLVTAAGGGLGLAAVDMATKIYKAKVIGVC-NSEDKTDLI----RQKGAWAA---LTFTNEKSLVNKVLEVSG-GKYA  233 (296)
Q Consensus       163 ~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~-~~~~~~~~~----~~~g~~~~---~~~~~~~~~~~~i~~~~~-~~g~  233 (296)
                      ++++|.|++|++|..+++.+ ...|++|+++. +++++.+.+    +..+....   .+..+..+..+.+.++.. ...+
T Consensus         3 k~ilItGas~giG~~la~~l-~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~i   81 (248)
T PRK06947          3 KVVLITGASRGIGRATAVLA-AARGWSVGINYARDAAAAEETADAVRAAGGRACVVAGDVANEADVIAMFDAVQSAFGRL   81 (248)
T ss_pred             cEEEEeCCCCcHHHHHHHHH-HHCCCEEEEEeCCCHHHHHHHHHHHHhcCCcEEEEEeccCCHHHHHHHHHHHHHhcCCC
Confidence            47999999999999988777 44699987764 444443322    22332222   233332344443433321 2368


Q ss_pred             cEEEECCCC
Q psy1959         234 NVVFEAVGG  242 (296)
Q Consensus       234 d~vld~~g~  242 (296)
                      |+++.+.|.
T Consensus        82 d~li~~ag~   90 (248)
T PRK06947         82 DALVNNAGI   90 (248)
T ss_pred             CEEEECCcc
Confidence            999999874

>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate

Probab=94.52  E-value=0.23  Score=38.32  Aligned_cols=87  Identities=13%  Similarity=0.129  Sum_probs=51.8

Q ss_pred             EEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcc-hHHHHHhc-C----CcE-EEEcCCchhHHHHHHHHhCCCcccEE
Q psy1959         164 TVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSED-KTDLIRQK-G----AWA-ALTFTNEKSLVNKVLEVSGGKYANVV  236 (296)
Q Consensus       164 ~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~-~~~~~~~~-g----~~~-~~~~~~~~~~~~~i~~~~~~~g~d~v  236 (296)
                      +|.|+|++|-+|...++++.+...++++.+..++. .-+.+.+. .    ... .+...+   . +.+      ..+|++
T Consensus         1 rV~IvGAtG~vG~~l~~lL~~hp~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~---~-~~~------~~~Dvv   70 (121)
T PF01118_consen    1 RVAIVGATGYVGRELLRLLAEHPDFELVALVSSSRSAGKPLSEVFPHPKGFEDLSVEDAD---P-EEL------SDVDVV   70 (121)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHTSTEEEEEEEESTTTTTSBHHHTTGGGTTTEEEBEEETS---G-HHH------TTESEE
T ss_pred             CEEEECCCCHHHHHHHHHHhcCCCccEEEeeeeccccCCeeehhccccccccceeEeecc---h-hHh------hcCCEE
Confidence            58899999999999999997766777666555444 33333322 1    211 121111   1 111      379999


Q ss_pred             EECCCCccHHHHHHHhhccCceEEe
Q psy1959         237 FEAVGGEDKTDLIRQKGAWAALTFT  261 (296)
Q Consensus       237 ld~~g~~~~~~~~~~lg~~~g~~~~  261 (296)
                      |.|.+..........+ ...|...+
T Consensus        71 f~a~~~~~~~~~~~~~-~~~g~~Vi   94 (121)
T PF01118_consen   71 FLALPHGASKELAPKL-LKAGIKVI   94 (121)
T ss_dssp             EE-SCHHHHHHHHHHH-HHTTSEEE
T ss_pred             EecCchhHHHHHHHHH-hhCCcEEE
Confidence            9999987666666666 34443433

This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....

>TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase

Probab=94.52  E-value=0.25  Score=44.95  Aligned_cols=76  Identities=17%  Similarity=0.169  Sum_probs=47.3

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhC-CCEEEEEeCCcchHHHHH-hcCC-cE-EE--EcCCchhHHHHHHHHhCCCccc
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIY-KAKVIGVCNSEDKTDLIR-QKGA-WA-AL--TFTNEKSLVNKVLEVSGGKYAN  234 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~-g~~Vi~~~~~~~~~~~~~-~~g~-~~-~~--~~~~~~~~~~~i~~~~~~~g~d  234 (296)
                      .|.+++|+|++|.+|...++.+.+.. +.+|++++++..+...+. .+.. .. .+  +..+    .+.+.+...  ++|
T Consensus         3 ~~k~vLVTGatG~IG~~l~~~L~~~g~~~~V~~~~r~~~~~~~~~~~~~~~~~~~v~~Dl~d----~~~l~~~~~--~iD   76 (324)
T TIGR03589         3 NNKSILITGGTGSFGKAFISRLLENYNPKKIIIYSRDELKQWEMQQKFPAPCLRFFIGDVRD----KERLTRALR--GVD   76 (324)
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHhCCCcEEEEEcCChhHHHHHHHHhCCCcEEEEEccCCC----HHHHHHHHh--cCC
Confidence            46889999999999999888773432 268998887766544332 2221 11 12  3333    123333332  589


Q ss_pred             EEEECCCC
Q psy1959         235 VVFEAVGG  242 (296)
Q Consensus       235 ~vld~~g~  242 (296)
                      ++|.+.|.
T Consensus        77 ~Vih~Ag~   84 (324)
T TIGR03589        77 YVVHAAAL   84 (324)
T ss_pred             EEEECccc
Confidence            99998874

This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family.

>PRK07041 short chain dehydrogenase; Provisional

Probab=94.51  E-value=0.24  Score=42.21  Aligned_cols=73  Identities=23%  Similarity=0.206  Sum_probs=47.0

Q ss_pred             EEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHh-c--CCcE-E--EEcCCchhHHHHHHHHhCCCcccEEEEC
Q psy1959         166 LVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQ-K--GAWA-A--LTFTNEKSLVNKVLEVSGGKYANVVFEA  239 (296)
Q Consensus       166 lI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~-~--g~~~-~--~~~~~~~~~~~~i~~~~~~~g~d~vld~  239 (296)
                      +|+|++|++|.+.++.+ ...|++|++++++.++.+.+.+ .  +... .  .+..+..++.+.+.+ .  ..+|.++.+
T Consensus         1 lItGas~~iG~~~a~~l-~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~-~--~~id~li~~   76 (230)
T PRK07041          1 LVVGGSSGIGLALARAF-AAEGARVTIASRSRDRLAAAARALGGGAPVRTAALDITDEAAVDAFFAE-A--GPFDHVVIT   76 (230)
T ss_pred             CeecCCChHHHHHHHHH-HHCCCEEEEEeCCHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHh-c--CCCCEEEEC
Confidence            58899999999888777 4579999999998776554432 2  2222 2  233332333333332 2  368999999


Q ss_pred             CCC
Q psy1959         240 VGG  242 (296)
Q Consensus       240 ~g~  242 (296)
                      .|.
T Consensus        77 ag~   79 (230)
T PRK07041         77 AAD   79 (230)
T ss_pred             CCC
Confidence            874

>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1

Probab=94.50  E-value=0.19  Score=41.21  Aligned_cols=51  Identities=25%  Similarity=0.303  Sum_probs=40.8

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCcEEEE
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALT  213 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~~~~~  213 (296)
                      +..+|+|+|+ |.+|+.|+.++ +.+|++|+..+...++...++..+...+..
T Consensus        19 ~p~~vvv~G~-G~vg~gA~~~~-~~lGa~v~~~d~~~~~~~~~~~~~~~~i~~   69 (168)
T PF01262_consen   19 PPAKVVVTGA-GRVGQGAAEIA-KGLGAEVVVPDERPERLRQLESLGAYFIEV   69 (168)
T ss_dssp             -T-EEEEEST-SHHHHHHHHHH-HHTT-EEEEEESSHHHHHHHHHTTTEESEE
T ss_pred             CCeEEEEECC-CHHHHHHHHHH-hHCCCEEEeccCCHHHHHhhhcccCceEEE
Confidence            3478899997 99999999999 678999999999988888888887755433

4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....

>PLN02989 cinnamyl-alcohol dehydrogenase family protein

Probab=94.50  E-value=0.24  Score=44.85  Aligned_cols=75  Identities=13%  Similarity=0.096  Sum_probs=47.6

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHh---c-CC--c-EEE--EcCCchhHHHHHHHHhCCC
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQ---K-GA--W-AAL--TFTNEKSLVNKVLEVSGGK  231 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~---~-g~--~-~~~--~~~~~~~~~~~i~~~~~~~  231 (296)
                      .+++++|+|++|.+|..+++.+ ...|++|++++++.++......   . +.  . ..+  +..+ .   +.+.+...  
T Consensus         4 ~~k~vlVtG~~G~IG~~l~~~L-~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d-~---~~~~~~~~--   76 (325)
T PLN02989          4 GGKVVCVTGASGYIASWIVKLL-LFRGYTINATVRDPKDRKKTDHLLALDGAKERLKLFKADLLD-E---GSFELAID--   76 (325)
T ss_pred             CCCEEEEECCchHHHHHHHHHH-HHCCCEEEEEEcCCcchhhHHHHHhccCCCCceEEEeCCCCC-c---hHHHHHHc--
Confidence            5789999999999999988877 4579999888777654432221   1 11  1 112  2222 1   22333332  


Q ss_pred             cccEEEECCCC
Q psy1959         232 YANVVFEAVGG  242 (296)
Q Consensus       232 g~d~vld~~g~  242 (296)
                      ++|+++.+.+.
T Consensus        77 ~~d~vih~A~~   87 (325)
T PLN02989         77 GCETVFHTASP   87 (325)
T ss_pred             CCCEEEEeCCC
Confidence            58999999873

>PRK09730 putative NAD(P)-binding oxidoreductase; Provisional

Probab=94.43  E-value=0.25  Score=42.44  Aligned_cols=79  Identities=16%  Similarity=0.133  Sum_probs=48.7

Q ss_pred             cEEEEEcCCCcHHHHHHHHHHHhCCCEEEEE-eCCcchHHHH----HhcCCcEE---EEcCCchhHHHHHHHHh-CCCcc
Q psy1959         163 QTVLVTAAGGGLGLAAVDMATKIYKAKVIGV-CNSEDKTDLI----RQKGAWAA---LTFTNEKSLVNKVLEVS-GGKYA  233 (296)
Q Consensus       163 ~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~-~~~~~~~~~~----~~~g~~~~---~~~~~~~~~~~~i~~~~-~~~g~  233 (296)
                      ++++|+|++|++|...++.+ ...|++|+++ .+++++....    +..+....   .+..+..+..+.+.+.. ...++
T Consensus         2 ~~~lItGa~g~iG~~l~~~l-~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~i~~~~~~~~~~~~~i   80 (247)
T PRK09730          2 AIALVTGGSRGIGRATALLL-AQEGYTVAVNYQQNLHAAQEVVNLITQAGGKAFVLQADISDENQVVAMFTAIDQHDEPL   80 (247)
T ss_pred             CEEEEeCCCchHHHHHHHHH-HHCCCEEEEEeCCChHHHHHHHHHHHhCCCeEEEEEccCCCHHHHHHHHHHHHHhCCCC
Confidence            47899999999999988877 4479998764 4555443322    22232221   23334234444444432 23478


Q ss_pred             cEEEECCCC
Q psy1959         234 NVVFEAVGG  242 (296)
Q Consensus       234 d~vld~~g~  242 (296)
                      |+++.+.|.
T Consensus        81 d~vi~~ag~   89 (247)
T PRK09730         81 AALVNNAGI   89 (247)
T ss_pred             CEEEECCCC
Confidence            999999984

>PLN02896 cinnamyl-alcohol dehydrogenase

Probab=94.41  E-value=0.32  Score=44.65  Aligned_cols=78  Identities=17%  Similarity=0.056  Sum_probs=49.3

Q ss_pred             CCCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHH-hc--CCcE-EEEcCCchhHHHHHHHHhCCCcccE
Q psy1959         160 KEKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIR-QK--GAWA-ALTFTNEKSLVNKVLEVSGGKYANV  235 (296)
Q Consensus       160 ~~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~-~~--g~~~-~~~~~~~~~~~~~i~~~~~~~g~d~  235 (296)
                      ..+.+|||+|++|.+|..+++.+ ...|.+|++++++.++.+.+. ++  +... .+.. +..+ .+.+.++..  ++|.
T Consensus         8 ~~~~~vLVtG~~GfIG~~l~~~L-~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~-Dl~~-~~~~~~~~~--~~d~   82 (353)
T PLN02896          8 SATGTYCVTGATGYIGSWLVKLL-LQRGYTVHATLRDPAKSLHLLSKWKEGDRLRLFRA-DLQE-EGSFDEAVK--GCDG   82 (353)
T ss_pred             cCCCEEEEECCCcHHHHHHHHHH-HHCCCEEEEEeCChHHHHHHHHhhccCCeEEEEEC-CCCC-HHHHHHHHc--CCCE
Confidence            35779999999999999988888 447999999888766554432 21  1111 1221 1111 123333332  5899


Q ss_pred             EEECCCC
Q psy1959         236 VFEAVGG  242 (296)
Q Consensus       236 vld~~g~  242 (296)
                      ||.+.+.
T Consensus        83 Vih~A~~   89 (353)
T PLN02896         83 VFHVAAS   89 (353)
T ss_pred             EEECCcc
Confidence            9998874

>PRK13940 glutamyl-tRNA reductase; Provisional

Probab=94.35  E-value=0.44  Score=45.06  Aligned_cols=73  Identities=18%  Similarity=0.174  Sum_probs=50.4

Q ss_pred             CCCcEEEEEcCCCcHHHHHHHHHHHhCCC-EEEEEeCCcchHHHHHh-cCCcEEEEcCCchhHHHHHHHHhCCCcccEEE
Q psy1959         160 KEKQTVLVTAAGGGLGLAAVDMATKIYKA-KVIGVCNSEDKTDLIRQ-KGAWAALTFTNEKSLVNKVLEVSGGKYANVVF  237 (296)
Q Consensus       160 ~~g~~vlI~Ga~g~vG~aa~~la~~~~g~-~Vi~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~~~g~d~vl  237 (296)
                      -.+.+++|.|+ |+.|.+++..+ ...|+ +++++.|+.++.+.+.+ ++......      + +.+.+..  ..+|++|
T Consensus       179 l~~kkvlviGa-G~~a~~va~~L-~~~g~~~I~V~nRt~~ra~~La~~~~~~~~~~------~-~~l~~~l--~~aDiVI  247 (414)
T PRK13940        179 ISSKNVLIIGA-GQTGELLFRHV-TALAPKQIMLANRTIEKAQKITSAFRNASAHY------L-SELPQLI--KKADIII  247 (414)
T ss_pred             ccCCEEEEEcC-cHHHHHHHHHH-HHcCCCEEEEECCCHHHHHHHHHHhcCCeEec------H-HHHHHHh--ccCCEEE
Confidence            36789999997 99999988888 45676 89999998887666654 44112221      1 1222222  2589999


Q ss_pred             ECCCCc
Q psy1959         238 EAVGGE  243 (296)
Q Consensus       238 d~~g~~  243 (296)
                      +|++.+
T Consensus       248 ~aT~a~  253 (414)
T PRK13940        248 AAVNVL  253 (414)
T ss_pred             ECcCCC
Confidence            999984

>PRK12827 short chain dehydrogenase; Provisional

Probab=94.32  E-value=0.29  Score=42.04  Aligned_cols=81  Identities=19%  Similarity=0.154  Sum_probs=47.9

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCC----cchHHHH----HhcCCcEE---EEcCCchhHHHHHHHHhC
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNS----EDKTDLI----RQKGAWAA---LTFTNEKSLVNKVLEVSG  229 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~----~~~~~~~----~~~g~~~~---~~~~~~~~~~~~i~~~~~  229 (296)
                      .+.+++|+|++|++|+..+..+ ...|++|+++++.    +++.+.+    .+.+....   .+..+.....+.+.+...
T Consensus         5 ~~~~ilItGasg~iG~~la~~l-~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~   83 (249)
T PRK12827          5 DSRRVLITGGSGGLGRAIAVRL-AADGADVIVLDIHPMRGRAEADAVAAGIEAAGGKALGLAFDVRDFAATRAALDAGVE   83 (249)
T ss_pred             CCCEEEEECCCChHHHHHHHHH-HHCCCeEEEEcCcccccHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHH
Confidence            3578999999999999988777 4579999886642    2233222    22233222   223332233333333221


Q ss_pred             -CCcccEEEECCCC
Q psy1959         230 -GKYANVVFEAVGG  242 (296)
Q Consensus       230 -~~g~d~vld~~g~  242 (296)
                       ..++|.++.+.|.
T Consensus        84 ~~~~~d~vi~~ag~   97 (249)
T PRK12827         84 EFGRLDILVNNAGI   97 (249)
T ss_pred             HhCCCCEEEECCCC
Confidence             1368999999884

>KOG4022|consensus

Probab=94.31  E-value=0.097  Score=42.58  Aligned_cols=73  Identities=27%  Similarity=0.283  Sum_probs=50.3

Q ss_pred             CcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCcEEEEcCCchhHH-------HHHHHHhCCCccc
Q psy1959         162 KQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLV-------NKVLEVSGGKYAN  234 (296)
Q Consensus       162 g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-------~~i~~~~~~~g~d  234 (296)
                      ..+|+|+|+-|.+|.+++++. +..++-|.-++.++.....     ...+++. + .+|.       +++-+...++++|
T Consensus         3 agrVivYGGkGALGSacv~~F-kannywV~siDl~eNe~Ad-----~sI~V~~-~-~swtEQe~~v~~~vg~sL~gekvD   74 (236)
T KOG4022|consen    3 AGRVIVYGGKGALGSACVEFF-KANNYWVLSIDLSENEQAD-----SSILVDG-N-KSWTEQEQSVLEQVGSSLQGEKVD   74 (236)
T ss_pred             CceEEEEcCcchHhHHHHHHH-HhcCeEEEEEeeccccccc-----ceEEecC-C-cchhHHHHHHHHHHHHhhcccccc
Confidence            357999999999999999999 6688888888876554321     1122222 2 3333       3344445678999


Q ss_pred             EEEECCCC
Q psy1959         235 VVFEAVGG  242 (296)
Q Consensus       235 ~vld~~g~  242 (296)
                      .||+-.|+
T Consensus        75 av~CVAGG   82 (236)
T KOG4022|consen   75 AVFCVAGG   82 (236)
T ss_pred             eEEEeecc
Confidence            99997774

>TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family

Probab=94.27  E-value=0.13  Score=45.71  Aligned_cols=75  Identities=12%  Similarity=0.096  Sum_probs=47.3

Q ss_pred             EEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCcE-EEEcCCchhHHHHHHHHhCCCc-ccEEEECCC
Q psy1959         164 TVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWA-ALTFTNEKSLVNKVLEVSGGKY-ANVVFEAVG  241 (296)
Q Consensus       164 ~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~i~~~~~~~g-~d~vld~~g  241 (296)
                      +|+|+|++|.+|..+++.+ ...|.+|.+++++.++...   .+... ..++.+...+.+.++....-.+ +|.++-+.+
T Consensus         1 ~ilVtGatG~iG~~vv~~L-~~~g~~V~~~~R~~~~~~~---~~~~~~~~d~~d~~~l~~a~~~~~~~~g~~d~v~~~~~   76 (285)
T TIGR03649         1 TILLTGGTGKTASRIARLL-QAASVPFLVASRSSSSSAG---PNEKHVKFDWLDEDTWDNPFSSDDGMEPEISAVYLVAP   76 (285)
T ss_pred             CEEEEcCCChHHHHHHHHH-HhCCCcEEEEeCCCccccC---CCCccccccCCCHHHHHHHHhcccCcCCceeEEEEeCC
Confidence            4899999999999988887 4469999999998775431   23222 2344442333333322111245 888887766


Q ss_pred             C
Q psy1959         242 G  242 (296)
Q Consensus       242 ~  242 (296)
                      .
T Consensus        77 ~   77 (285)
T TIGR03649        77 P   77 (285)
T ss_pred             C
Confidence            3

This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi.

>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]

Probab=94.22  E-value=0.54  Score=39.19  Aligned_cols=101  Identities=15%  Similarity=0.141  Sum_probs=66.0

Q ss_pred             HHcCCCCCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHH----hcCCcEEEEcCCchhHHHHHHHHhCC
Q psy1959         155 RHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIR----QKGAWAALTFTNEKSLVNKVLEVSGG  230 (296)
Q Consensus       155 ~~~~~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~----~~g~~~~~~~~~~~~~~~~i~~~~~~  230 (296)
                      ....+++|+.++=.|+  +.|..++++++.-...+|++++++++..+..+    .+|.+-+....  .+..+.+...   
T Consensus        28 s~L~~~~g~~l~DIGa--GtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~--g~Ap~~L~~~---  100 (187)
T COG2242          28 SKLRPRPGDRLWDIGA--GTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGVDNLEVVE--GDAPEALPDL---  100 (187)
T ss_pred             HhhCCCCCCEEEEeCC--CccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEe--ccchHhhcCC---
Confidence            3457889998877786  33667777773334669999999999887764    35755332222  1223333322   


Q ss_pred             CcccEEEECCCC---ccHHHHHHHhhccCceEEeec
Q psy1959         231 KYANVVFEAVGG---EDKTDLIRQKGAWAALTFTNE  263 (296)
Q Consensus       231 ~g~d~vld~~g~---~~~~~~~~~lg~~~g~~~~~~  263 (296)
                      ..+|.+|---|.   +.++.+|..| +.+|++..+.
T Consensus       101 ~~~daiFIGGg~~i~~ile~~~~~l-~~ggrlV~na  135 (187)
T COG2242         101 PSPDAIFIGGGGNIEEILEAAWERL-KPGGRLVANA  135 (187)
T ss_pred             CCCCEEEECCCCCHHHHHHHHHHHc-CcCCeEEEEe
Confidence            257877765443   3688899999 8998886654

>PRK06550 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=94.19  E-value=0.37  Score=41.17  Aligned_cols=73  Identities=19%  Similarity=0.227  Sum_probs=45.3

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCcEEEEcCCchhHHHHHHHHhCCCcccEEEECC
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNKVLEVSGGKYANVVFEAV  240 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~g~d~vld~~  240 (296)
                      .+++++|+|++|++|.+.+..+ ...|++|++++++..+..     ........-+..+..+.+.+..  ..+|+++++.
T Consensus         4 ~~k~~lVtGas~~iG~~ia~~l-~~~G~~v~~~~r~~~~~~-----~~~~~~~~~D~~~~~~~~~~~~--~~id~lv~~a   75 (235)
T PRK06550          4 MTKTVLITGAASGIGLAQARAF-LAQGAQVYGVDKQDKPDL-----SGNFHFLQLDLSDDLEPLFDWV--PSVDILCNTA   75 (235)
T ss_pred             CCCEEEEcCCCchHHHHHHHHH-HHCCCEEEEEeCCccccc-----CCcEEEEECChHHHHHHHHHhh--CCCCEEEECC
Confidence            4678999999999999988877 447999999987654321     1111111111111122233322  3689999998


Q ss_pred             C
Q psy1959         241 G  241 (296)
Q Consensus       241 g  241 (296)
                      |
T Consensus        76 g   76 (235)
T PRK06550         76 G   76 (235)
T ss_pred             C
Confidence            7

>COG1028 FabG Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]

Probab=94.19  E-value=0.29  Score=42.27  Aligned_cols=81  Identities=19%  Similarity=0.191  Sum_probs=50.0

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcch--HHHHHhcCC-----cEE---EEcCC-chhHHHHHHHHhC
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDK--TDLIRQKGA-----WAA---LTFTN-EKSLVNKVLEVSG  229 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~--~~~~~~~g~-----~~~---~~~~~-~~~~~~~i~~~~~  229 (296)
                      .++.++|+|+++++|.+++..+ ...|++|+++.+..++  .+.+.+...     ...   .+..+ .......+.....
T Consensus         4 ~~~~ilITGas~GiG~aia~~l-~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~~v~~~~~~~~~   82 (251)
T COG1028           4 SGKVALVTGASSGIGRAIARAL-AREGARVVVAARRSEEEAAEALAAAIKEAGGGRAAAVAADVSDDEESVEALVAAAEE   82 (251)
T ss_pred             CCCEEEEeCCCCHHHHHHHHHH-HHCCCeEEEEcCCCchhhHHHHHHHHHhcCCCcEEEEEecCCCCHHHHHHHHHHHHH
Confidence            5789999999999999988777 4579998877776553  333332211     121   23332 2333333333322


Q ss_pred             -CCcccEEEECCCC
Q psy1959         230 -GKYANVVFEAVGG  242 (296)
Q Consensus       230 -~~g~d~vld~~g~  242 (296)
                       -.++|+++++.|.
T Consensus        83 ~~g~id~lvnnAg~   96 (251)
T COG1028          83 EFGRIDILVNNAGI   96 (251)
T ss_pred             HcCCCCEEEECCCC
Confidence             2359999999985

>TIGR01500 sepiapter_red sepiapterin reductase

Probab=94.04  E-value=0.34  Score=42.20  Aligned_cols=40  Identities=18%  Similarity=0.217  Sum_probs=31.2

Q ss_pred             EEEEEcCCCcHHHHHHHHHHH---hCCCEEEEEeCCcchHHHH
Q psy1959         164 TVLVTAAGGGLGLAAVDMATK---IYKAKVIGVCNSEDKTDLI  203 (296)
Q Consensus       164 ~vlI~Ga~g~vG~aa~~la~~---~~g~~Vi~~~~~~~~~~~~  203 (296)
                      .++|+|+++++|.+++..+.+   ..|++|+.+.+++++.+.+
T Consensus         2 ~vlItGas~GIG~~~a~~la~~~~~~g~~V~~~~r~~~~~~~~   44 (256)
T TIGR01500         2 VCLVTGASRGFGRTIAQELAKCLKSPGSVLVLSARNDEALRQL   44 (256)
T ss_pred             EEEEecCCCchHHHHHHHHHHhhccCCcEEEEEEcCHHHHHHH
Confidence            589999999999986665423   2589999999988776654

This model describes sepiapterin reductase, a member of the short chain dehydrogenase/reductase family. The enzyme catalyzes the last step in the biosynthesis of tetrahydrobiopterin. A similar enzyme in Bacillus cereus was isolated for its ability to convert benzil to (S)-benzoin, a property sepiapterin reductase also shares. Cutoff scores for this model are set such that benzil reductase scores between trusted and noise cutoffs.

>PLN02427 UDP-apiose/xylose synthase

Probab=94.03  E-value=0.35  Score=45.03  Aligned_cols=77  Identities=13%  Similarity=0.111  Sum_probs=49.2

Q ss_pred             CCCCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCC-----c-EEE--EcCCchhHHHHHHHHhCC
Q psy1959         159 LKEKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGA-----W-AAL--TFTNEKSLVNKVLEVSGG  230 (296)
Q Consensus       159 ~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~-----~-~~~--~~~~~~~~~~~i~~~~~~  230 (296)
                      ..+..+|+|+|++|-+|..+++.+.+..+.+|++++++.++...+.+.+.     . ..+  +..+    .+.+.++.. 
T Consensus        11 ~~~~~~VlVTGgtGfIGs~lv~~L~~~~g~~V~~l~r~~~~~~~l~~~~~~~~~~~~~~~~~Dl~d----~~~l~~~~~-   85 (386)
T PLN02427         11 PIKPLTICMIGAGGFIGSHLCEKLMTETPHKVLALDVYNDKIKHLLEPDTVPWSGRIQFHRINIKH----DSRLEGLIK-   85 (386)
T ss_pred             cccCcEEEEECCcchHHHHHHHHHHhcCCCEEEEEecCchhhhhhhccccccCCCCeEEEEcCCCC----hHHHHHHhh-
Confidence            33456899999999999988887733225899999987766655543321     1 112  2222    123334332 


Q ss_pred             CcccEEEECCC
Q psy1959         231 KYANVVFEAVG  241 (296)
Q Consensus       231 ~g~d~vld~~g  241 (296)
                       ++|+||.+.+
T Consensus        86 -~~d~ViHlAa   95 (386)
T PLN02427         86 -MADLTINLAA   95 (386)
T ss_pred             -cCCEEEEccc
Confidence             5899999886

>TIGR01830 3oxo_ACP_reduc 3-oxoacyl-(acyl-carrier-protein) reductase

Probab=94.02  E-value=0.26  Score=42.06  Aligned_cols=77  Identities=22%  Similarity=0.197  Sum_probs=46.6

Q ss_pred             EEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCc-chHH----HHHhcCCcEE---EEcCCchhHHHHHHHHhC-CCcccE
Q psy1959         165 VLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSE-DKTD----LIRQKGAWAA---LTFTNEKSLVNKVLEVSG-GKYANV  235 (296)
Q Consensus       165 vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~-~~~~----~~~~~g~~~~---~~~~~~~~~~~~i~~~~~-~~g~d~  235 (296)
                      ++|+|++|++|..+++.+ ...|++|++++++. ++.+    .+++.+....   .+..+...+.+.+.+... -..+|.
T Consensus         1 vlItG~~g~iG~~la~~l-~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~   79 (239)
T TIGR01830         1 ALVTGASRGIGRAIALKL-AKEGAKVIITYRSSEEGAEEVVEELKAYGVKALGVVCDVSDREDVKAVVEEIEEELGPIDI   79 (239)
T ss_pred             CEEECCCcHHHHHHHHHH-HHCCCEEEEEeCCchhHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHHhCCCCE
Confidence            579999999999988887 44699999998764 2322    2233343222   233332333333322211 136899


Q ss_pred             EEECCCC
Q psy1959         236 VFEAVGG  242 (296)
Q Consensus       236 vld~~g~  242 (296)
                      ++.+.|.
T Consensus        80 vi~~ag~   86 (239)
T TIGR01830        80 LVNNAGI   86 (239)
T ss_pred             EEECCCC
Confidence            9998885

This model represents 3-oxoacyl-[ACP] reductase, also called 3-ketoacyl-acyl carrier protein reductase, an enzyme of fatty acid biosynthesis.

>PLN02214 cinnamoyl-CoA reductase

Probab=94.01  E-value=0.39  Score=44.00  Aligned_cols=78  Identities=21%  Similarity=0.186  Sum_probs=47.6

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHH--HHHhc-C--CcEEEEcCCchhHHHHHHHHhCCCcccE
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTD--LIRQK-G--AWAALTFTNEKSLVNKVLEVSGGKYANV  235 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~--~~~~~-g--~~~~~~~~~~~~~~~~i~~~~~~~g~d~  235 (296)
                      ++.+|+|+|++|.+|...++.+ ...|.+|++++++.++..  .+.++ +  ....+..-+..+ ...+.+...  ++|+
T Consensus         9 ~~~~vlVTGatGfIG~~l~~~L-~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d-~~~~~~~~~--~~d~   84 (342)
T PLN02214          9 AGKTVCVTGAGGYIASWIVKIL-LERGYTVKGTVRNPDDPKNTHLRELEGGKERLILCKADLQD-YEALKAAID--GCDG   84 (342)
T ss_pred             CCCEEEEECCCcHHHHHHHHHH-HHCcCEEEEEeCCchhhhHHHHHHhhCCCCcEEEEecCcCC-hHHHHHHHh--cCCE
Confidence            5678999999999999988877 457999999988765422  12222 1  111111111011 123333332  6899


Q ss_pred             EEECCCC
Q psy1959         236 VFEAVGG  242 (296)
Q Consensus       236 vld~~g~  242 (296)
                      ||.+.+.
T Consensus        85 Vih~A~~   91 (342)
T PLN02214         85 VFHTASP   91 (342)
T ss_pred             EEEecCC
Confidence            9999874

>KOG1200|consensus

Probab=93.99  E-value=0.49  Score=39.84  Aligned_cols=81  Identities=15%  Similarity=0.127  Sum_probs=51.6

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHH-HHHhcCC--cEE---EEcCCchhHHHHHHHHhC-CCcc
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTD-LIRQKGA--WAA---LTFTNEKSLVNKVLEVSG-GKYA  233 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~-~~~~~g~--~~~---~~~~~~~~~~~~i~~~~~-~~g~  233 (296)
                      ..+.++|.|++.++|.+..+.. ...|++|.+.+.+.+..+ -++.++.  ++.   .+-.+..+....+.+... -..+
T Consensus        13 ~sk~~~vtGg~sGIGrAia~~l-a~~Garv~v~dl~~~~A~ata~~L~g~~~h~aF~~DVS~a~~v~~~l~e~~k~~g~p   91 (256)
T KOG1200|consen   13 MSKVAAVTGGSSGIGRAIAQLL-AKKGARVAVADLDSAAAEATAGDLGGYGDHSAFSCDVSKAHDVQNTLEEMEKSLGTP   91 (256)
T ss_pred             hcceeEEecCCchHHHHHHHHH-HhcCcEEEEeecchhhHHHHHhhcCCCCccceeeeccCcHHHHHHHHHHHHHhcCCC
Confidence            3467799999999999988888 447999999998666443 4455654  221   222221233222333321 1268


Q ss_pred             cEEEECCCC
Q psy1959         234 NVVFEAVGG  242 (296)
Q Consensus       234 d~vld~~g~  242 (296)
                      +++++|.|-
T Consensus        92 svlVncAGI  100 (256)
T KOG1200|consen   92 SVLVNCAGI  100 (256)
T ss_pred             cEEEEcCcc
Confidence            999999994

>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3

Probab=93.98  E-value=0.32  Score=39.72  Aligned_cols=85  Identities=18%  Similarity=0.138  Sum_probs=55.2

Q ss_pred             CCCCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCcEEEEcCCchhHHHHHHHHhCCCcccEEEE
Q psy1959         159 LKEKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNKVLEVSGGKYANVVFE  238 (296)
Q Consensus       159 ~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~g~d~vld  238 (296)
                      +-.|++++|.|= |-+|.-+++.+ +.+|++|++++.++-+.-.+..-|....       .    +.++.  ...|+++.
T Consensus        20 ~l~Gk~vvV~GY-G~vG~g~A~~l-r~~Ga~V~V~e~DPi~alqA~~dGf~v~-------~----~~~a~--~~adi~vt   84 (162)
T PF00670_consen   20 MLAGKRVVVIGY-GKVGKGIARAL-RGLGARVTVTEIDPIRALQAAMDGFEVM-------T----LEEAL--RDADIFVT   84 (162)
T ss_dssp             --TTSEEEEE---SHHHHHHHHHH-HHTT-EEEEE-SSHHHHHHHHHTT-EEE------------HHHHT--TT-SEEEE
T ss_pred             eeCCCEEEEeCC-CcccHHHHHHH-hhCCCEEEEEECChHHHHHhhhcCcEec-------C----HHHHH--hhCCEEEE
Confidence            347999999995 99999999999 6789999999998887777776776421       1    11222  36799999


Q ss_pred             CCCCcc--HHHHHHHhhccCceE
Q psy1959         239 AVGGED--KTDLIRQKGAWAALT  259 (296)
Q Consensus       239 ~~g~~~--~~~~~~~lg~~~g~~  259 (296)
                      +.|...  -.+-++.| +.+..+
T Consensus        85 aTG~~~vi~~e~~~~m-kdgail  106 (162)
T PF00670_consen   85 ATGNKDVITGEHFRQM-KDGAIL  106 (162)
T ss_dssp             -SSSSSSB-HHHHHHS--TTEEE
T ss_pred             CCCCccccCHHHHHHh-cCCeEE
Confidence            999843  34677778 555444

3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....

>KOG1610|consensus

Probab=93.93  E-value=0.94  Score=40.82  Aligned_cols=84  Identities=18%  Similarity=0.174  Sum_probs=58.6

Q ss_pred             cCCCCCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcC----C-cEEEEcCCc---hhHHHHHHHHh
Q psy1959         157 AKLKEKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKG----A-WAALTFTNE---KSLVNKVLEVS  228 (296)
Q Consensus       157 ~~~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g----~-~~~~~~~~~---~~~~~~i~~~~  228 (296)
                      ....+++.|+|+|+.+++|...+.-+ ...|.+|++.+..++..+.++..-    . +..++..++   ....+.+++..
T Consensus        24 ~~~~~~k~VlITGCDSGfG~~LA~~L-~~~Gf~V~Agcl~~~gae~L~~~~~s~rl~t~~LDVT~~esi~~a~~~V~~~l  102 (322)
T KOG1610|consen   24 LDSLSDKAVLITGCDSGFGRLLAKKL-DKKGFRVFAGCLTEEGAESLRGETKSPRLRTLQLDVTKPESVKEAAQWVKKHL  102 (322)
T ss_pred             ccccCCcEEEEecCCcHHHHHHHHHH-HhcCCEEEEEeecCchHHHHhhhhcCCcceeEeeccCCHHHHHHHHHHHHHhc
Confidence            33456788999999999998766666 447999999998888777665422    1 112333332   34445566666


Q ss_pred             CCCcccEEEECCC
Q psy1959         229 GGKYANVVFEAVG  241 (296)
Q Consensus       229 ~~~g~d~vld~~g  241 (296)
                      +..+.-.++++.|
T Consensus       103 ~~~gLwglVNNAG  115 (322)
T KOG1610|consen  103 GEDGLWGLVNNAG  115 (322)
T ss_pred             ccccceeEEeccc
Confidence            7778889999998

>PRK12824 acetoacetyl-CoA reductase; Provisional

Probab=93.91  E-value=0.37  Score=41.31  Aligned_cols=79  Identities=18%  Similarity=0.163  Sum_probs=47.3

Q ss_pred             cEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcc-hHH-HHHhc---CCcE-E--EEcCCchhHHHHHHHHhC-CCcc
Q psy1959         163 QTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSED-KTD-LIRQK---GAWA-A--LTFTNEKSLVNKVLEVSG-GKYA  233 (296)
Q Consensus       163 ~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~-~~~-~~~~~---g~~~-~--~~~~~~~~~~~~i~~~~~-~~g~  233 (296)
                      ++++|+|++|++|+.+++.+ ...|++|+.++++.. ..+ .....   +... .  .+..+.....+.+.+... -..+
T Consensus         3 k~vlItG~s~~iG~~la~~l-~~~g~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~i   81 (245)
T PRK12824          3 KIALVTGAKRGIGSAIAREL-LNDGYRVIATYFSGNDCAKDWFEEYGFTEDQVRLKELDVTDTEECAEALAEIEEEEGPV   81 (245)
T ss_pred             CEEEEeCCCchHHHHHHHHH-HHcCCEEEEEeCCcHHHHHHHHHHhhccCCeEEEEEcCCCCHHHHHHHHHHHHHHcCCC
Confidence            47899999999999988877 446999999988743 122 22222   2111 1  223332333333333221 2358


Q ss_pred             cEEEECCCC
Q psy1959         234 NVVFEAVGG  242 (296)
Q Consensus       234 d~vld~~g~  242 (296)
                      |+++.+.|.
T Consensus        82 d~vi~~ag~   90 (245)
T PRK12824         82 DILVNNAGI   90 (245)
T ss_pred             CEEEECCCC
Confidence            999999874

>PF01370 Epimerase: NAD dependent epimerase/dehydratase family; InterPro: IPR001509 This family of proteins utilise NAD as a cofactor

Probab=93.89  E-value=0.2  Score=42.73  Aligned_cols=73  Identities=19%  Similarity=0.138  Sum_probs=48.9

Q ss_pred             EEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHh-cCCcE-EEEcCCchhHHHHHHHHhCCCcccEEEECCCC
Q psy1959         165 VLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQ-KGAWA-ALTFTNEKSLVNKVLEVSGGKYANVVFEAVGG  242 (296)
Q Consensus       165 vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~-~g~~~-~~~~~~~~~~~~~i~~~~~~~g~d~vld~~g~  242 (296)
                      |+|+|++|-+|..++..+ ...|.+|+.+.++......... ..... ..+..+...+.+.+..    ..+|.++.+.+.
T Consensus         1 IlI~GatG~iG~~l~~~l-~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~~~~~----~~~d~vi~~a~~   75 (236)
T PF01370_consen    1 ILITGATGFIGSALVRQL-LKKGHEVIVLSRSSNSESFEEKKLNVEFVIGDLTDKEQLEKLLEK----ANIDVVIHLAAF   75 (236)
T ss_dssp             EEEETTTSHHHHHHHHHH-HHTTTEEEEEESCSTGGHHHHHHTTEEEEESETTSHHHHHHHHHH----HTESEEEEEBSS
T ss_pred             EEEEccCCHHHHHHHHHH-HHcCCccccccccccccccccccceEEEEEeeccccccccccccc----cCceEEEEeecc
Confidence            789999999999999988 5579999988887776655443 22221 1333442233333322    278999999886

The proteins in this family use nucleotide-sugar substrates for a variety of chemical reactions []. It contains the NAD(P)- binding domain (IPR016040 from INTERPRO) which is a commonly found domain with a core Rossmann-type fold. One of the best studied of these proteins is UDP-galactose 4-epimerase which catalyses the conversion of UDP-galactose to UDP-glucose during galactose metabolism [, ].; GO: 0003824 catalytic activity, 0050662 coenzyme binding, 0044237 cellular metabolic process; PDB: 2NNL_D 3C1T_B 3BXX_C 2IOD_C 2X4G_A 2Q1W_B 3SLG_B 1R66_A 1R6D_A 1KEU_B ....

>PRK12748 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=93.87  E-value=0.39  Score=41.75  Aligned_cols=35  Identities=26%  Similarity=0.213  Sum_probs=28.3

Q ss_pred             CCcEEEEEcCC--CcHHHHHHHHHHHhCCCEEEEEeCC
Q psy1959         161 EKQTVLVTAAG--GGLGLAAVDMATKIYKAKVIGVCNS  196 (296)
Q Consensus       161 ~g~~vlI~Ga~--g~vG~aa~~la~~~~g~~Vi~~~~~  196 (296)
                      .+++++|+|++  |++|.+.+..+ ...|++|++++++
T Consensus         4 ~~k~vlItGas~~~giG~~la~~l-~~~G~~vi~~~r~   40 (256)
T PRK12748          4 MKKIALVTGASRLNGIGAAVCRRL-AAKGIDIFFTYWS   40 (256)
T ss_pred             CCcEEEEeCCCCCCCHHHHHHHHH-HHcCCcEEEEcCC
Confidence            45789999997  48999877766 3469999999876

>PRK12548 shikimate 5-dehydrogenase; Provisional

Probab=93.82  E-value=0.55  Score=42.14  Aligned_cols=35  Identities=20%  Similarity=0.156  Sum_probs=28.9

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCE-EEEEeCCc
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAK-VIGVCNSE  197 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~-Vi~~~~~~  197 (296)
                      ++++++|+|+ |+.|.+++..+ ...|++ |+++.++.
T Consensus       125 ~~k~vlI~GA-GGagrAia~~L-a~~G~~~V~I~~R~~  160 (289)
T PRK12548        125 KGKKLTVIGA-GGAATAIQVQC-ALDGAKEITIFNIKD  160 (289)
T ss_pred             CCCEEEEECC-cHHHHHHHHHH-HHCCCCEEEEEeCCc
Confidence            5789999998 89999988776 457884 99999886

>PRK06123 short chain dehydrogenase; Provisional

Probab=93.81  E-value=0.31  Score=41.99  Aligned_cols=80  Identities=19%  Similarity=0.204  Sum_probs=48.1

Q ss_pred             CcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeC-CcchHHH----HHhcCCcEE---EEcCCchhHHHHHHHHhC-CCc
Q psy1959         162 KQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCN-SEDKTDL----IRQKGAWAA---LTFTNEKSLVNKVLEVSG-GKY  232 (296)
Q Consensus       162 g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~-~~~~~~~----~~~~g~~~~---~~~~~~~~~~~~i~~~~~-~~g  232 (296)
                      +.+++|+|++|++|..+++.. ...|++|+...+ ++++.+.    ++..+....   .+..+...+.+.+.+... ...
T Consensus         2 ~~~~lVtG~~~~iG~~~a~~l-~~~G~~vv~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~   80 (248)
T PRK06123          2 RKVMIITGASRGIGAATALLA-AERGYAVCLNYLRNRDAAEAVVQAIRRQGGEALAVAADVADEADVLRLFEAVDRELGR   80 (248)
T ss_pred             CCEEEEECCCchHHHHHHHHH-HHCCCeEEEecCCCHHHHHHHHHHHHhCCCcEEEEEeccCCHHHHHHHHHHHHHHhCC
Confidence            458999999999999887777 346988877653 3333332    223333221   233432344444443321 236


Q ss_pred             ccEEEECCCC
Q psy1959         233 ANVVFEAVGG  242 (296)
Q Consensus       233 ~d~vld~~g~  242 (296)
                      +|+++.+.|.
T Consensus        81 id~li~~ag~   90 (248)
T PRK06123         81 LDALVNNAGI   90 (248)
T ss_pred             CCEEEECCCC
Confidence            8999999885

>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=93.81  E-value=1.9  Score=36.45  Aligned_cols=46  Identities=26%  Similarity=0.213  Sum_probs=38.6

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhc-CC
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQK-GA  208 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~-g~  208 (296)
                      .|.+++|.|. |.+|..+++.+ ...|++|++.+++.++.+.+++. ++
T Consensus        27 ~gk~v~I~G~-G~vG~~~A~~L-~~~G~~Vvv~D~~~~~~~~~~~~~g~   73 (200)
T cd01075          27 EGKTVAVQGL-GKVGYKLAEHL-LEEGAKLIVADINEEAVARAAELFGA   73 (200)
T ss_pred             CCCEEEEECC-CHHHHHHHHHH-HHCCCEEEEEcCCHHHHHHHHHHcCC
Confidence            6789999997 99999999999 55899999999988887776543 53

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc

>PLN02240 UDP-glucose 4-epimerase

Probab=93.73  E-value=0.41  Score=43.70  Aligned_cols=35  Identities=29%  Similarity=0.245  Sum_probs=29.3

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCC
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNS  196 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~  196 (296)
                      .+++|+|+|++|.+|...++.+ ...|.+|+++++.
T Consensus         4 ~~~~vlItGatG~iG~~l~~~L-~~~g~~V~~~~~~   38 (352)
T PLN02240          4 MGRTILVTGGAGYIGSHTVLQL-LLAGYKVVVIDNL   38 (352)
T ss_pred             CCCEEEEECCCChHHHHHHHHH-HHCCCEEEEEeCC
Confidence            3578999999999999988887 4468999998764

>KOG4169|consensus

Probab=93.67  E-value=0.18  Score=43.40  Aligned_cols=80  Identities=21%  Similarity=0.266  Sum_probs=53.9

Q ss_pred             CcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcC---C-cEEEE--c--CCchhHHHHHHHHhCC-Cc
Q psy1959         162 KQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKG---A-WAALT--F--TNEKSLVNKVLEVSGG-KY  232 (296)
Q Consensus       162 g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g---~-~~~~~--~--~~~~~~~~~i~~~~~~-~g  232 (296)
                      |+++++.|+.|++|++....+ ...|+++.+++.+.|+.+...++.   . ..++.  +  .+..+..+.+++.... ..
T Consensus         5 GKna~vtggagGIGl~~sk~L-l~kgik~~~i~~~~En~~a~akL~ai~p~~~v~F~~~DVt~~~~~~~~f~ki~~~fg~   83 (261)
T KOG4169|consen    5 GKNALVTGGAGGIGLATSKAL-LEKGIKVLVIDDSEENPEAIAKLQAINPSVSVIFIKCDVTNRGDLEAAFDKILATFGT   83 (261)
T ss_pred             CceEEEecCCchhhHHHHHHH-HHcCchheeehhhhhCHHHHHHHhccCCCceEEEEEeccccHHHHHHHHHHHHHHhCc
Confidence            889999999999999977666 457999999998888766555542   2 12221  1  2224555555554322 25


Q ss_pred             ccEEEECCCC
Q psy1959         233 ANVVFEAVGG  242 (296)
Q Consensus       233 ~d~vld~~g~  242 (296)
                      +|++++..|-
T Consensus        84 iDIlINgAGi   93 (261)
T KOG4169|consen   84 IDILINGAGI   93 (261)
T ss_pred             eEEEEccccc
Confidence            8999998884

>PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated

Probab=93.66  E-value=0.34  Score=48.73  Aligned_cols=80  Identities=15%  Similarity=0.035  Sum_probs=49.2

Q ss_pred             CCCCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhc-CCcEEEEcCCchhHHHHHHHHhCCCcccEEE
Q psy1959         159 LKEKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQK-GAWAALTFTNEKSLVNKVLEVSGGKYANVVF  237 (296)
Q Consensus       159 ~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~i~~~~~~~g~d~vl  237 (296)
                      .+++.+|+|+|++|-+|..+++.+.+..|.+|+++++...+....... +. ..+.. +..+....+.++.  .++|+||
T Consensus       312 ~~~~~~VLVTGatGFIGs~Lv~~Ll~~~g~~V~~l~r~~~~~~~~~~~~~~-~~~~g-Dl~d~~~~l~~~l--~~~D~Vi  387 (660)
T PRK08125        312 AKRRTRVLILGVNGFIGNHLTERLLRDDNYEVYGLDIGSDAISRFLGHPRF-HFVEG-DISIHSEWIEYHI--KKCDVVL  387 (660)
T ss_pred             hhcCCEEEEECCCchHHHHHHHHHHhCCCcEEEEEeCCchhhhhhcCCCce-EEEec-cccCcHHHHHHHh--cCCCEEE
Confidence            457889999999999999999877333478999999866543322221 11 11211 1111112233333  2689999


Q ss_pred             ECCCC
Q psy1959         238 EAVGG  242 (296)
Q Consensus       238 d~~g~  242 (296)
                      .+++.
T Consensus       388 HlAa~  392 (660)
T PRK08125        388 PLVAI  392 (660)
T ss_pred             ECccc
Confidence            97763

>PF04321 RmlD_sub_bind: RmlD substrate binding domain; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1

Probab=93.62  E-value=0.2  Score=44.79  Aligned_cols=60  Identities=25%  Similarity=0.261  Sum_probs=36.8

Q ss_pred             EEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCcEEEEcCCchhHHHHHHHHhCCCcccEEEECCCC
Q psy1959         164 TVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNKVLEVSGGKYANVVFEAVGG  242 (296)
Q Consensus       164 ~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~g~d~vld~~g~  242 (296)
                      +|||+|++|.+|.+..+.+ +..|.+|+.+.+.              .++..+.....+.+.+    ..+|+||+|.+-
T Consensus         2 riLI~GasG~lG~~l~~~l-~~~~~~v~~~~r~--------------~~dl~d~~~~~~~~~~----~~pd~Vin~aa~   61 (286)
T PF04321_consen    2 RILITGASGFLGSALARAL-KERGYEVIATSRS--------------DLDLTDPEAVAKLLEA----FKPDVVINCAAY   61 (286)
T ss_dssp             EEEEETTTSHHHHHHHHHH-TTTSEEEEEESTT--------------CS-TTSHHHHHHHHHH----H--SEEEE----
T ss_pred             EEEEECCCCHHHHHHHHHH-hhCCCEEEEeCch--------------hcCCCCHHHHHHHHHH----hCCCeEecccee
Confidence            6899999999999999999 5578888888655              1222231223333333    258999999874

1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. dTDP-6-deoxy-L-mannose + NADP+ = dTDP-4-dehydro-6-deoxy-L-mannose + NADPH ; GO: 0008831 dTDP-4-dehydrorhamnose reductase activity, 0045226 extracellular polysaccharide biosynthetic process; PDB: 2YDX_D 2YDY_A 3SC6_C 1VL0_B 2GGS_A 1KBZ_A 1KC3_A 1KC1_A 1N2S_A.

>PRK08261 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=93.62  E-value=0.15  Score=48.50  Aligned_cols=60  Identities=12%  Similarity=-0.011  Sum_probs=43.8

Q ss_pred             HHcCCCCCcEEE----EEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCc-EEEEcC
Q psy1959         155 RHAKLKEKQTVL----VTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAW-AALTFT  215 (296)
Q Consensus       155 ~~~~~~~g~~vl----I~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~-~~~~~~  215 (296)
                      ...++++|+.++    |+|++|++|.+++|++ +..|++|+.+...+.+....+..+.. .+++.+
T Consensus        27 ~l~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~-~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~d~~   91 (450)
T PRK08261         27 PLRRYRPGQPLLDGPVLVGGAGRLAEALAALL-AGLGYDVVANNDGGLTWAAGWGDRFGALVFDAT   91 (450)
T ss_pred             cccCCCCCCCCCCCceEEccCchhHHHHHHHH-hhCCCeeeecCccccccccCcCCcccEEEEECC
Confidence            355678899988    8898999999999999 56899999887666644444444444 244443

>TIGR00715 precor6x_red precorrin-6x reductase

Probab=93.46  E-value=0.3  Score=43.12  Aligned_cols=74  Identities=12%  Similarity=0.028  Sum_probs=52.3

Q ss_pred             EEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCcEEEEcCCchhHHHHHHHHhCCCcccEEEECCCC
Q psy1959         164 TVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNKVLEVSGGKYANVVFEAVGG  242 (296)
Q Consensus       164 ~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~g~d~vld~~g~  242 (296)
                      +|+|.|++|- |...+..+ ...|.+|+++.+++.+.+.+...|...+....  .+.. .+.+.....++|+++|++..
T Consensus         2 ~ILvlGGT~e-gr~la~~L-~~~g~~v~~s~~t~~~~~~~~~~g~~~v~~g~--l~~~-~l~~~l~~~~i~~VIDAtHP   75 (256)
T TIGR00715         2 TVLLMGGTVD-SRAIAKGL-IAQGIEILVTVTTSEGKHLYPIHQALTVHTGA--LDPQ-ELREFLKRHSIDILVDATHP   75 (256)
T ss_pred             eEEEEechHH-HHHHHHHH-HhCCCeEEEEEccCCccccccccCCceEEECC--CCHH-HHHHHHHhcCCCEEEEcCCH
Confidence            6899998665 88888666 34689999999999888887777655544322  1222 24444445689999999985

This enzyme was found to be a monomer by gel filtration.

>TIGR03466 HpnA hopanoid-associated sugar epimerase

Probab=93.45  E-value=0.31  Score=43.77  Aligned_cols=72  Identities=15%  Similarity=0.098  Sum_probs=47.8

Q ss_pred             EEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCcEE-EEcCCchhHHHHHHHHhCCCcccEEEECCCC
Q psy1959         164 TVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAA-LTFTNEKSLVNKVLEVSGGKYANVVFEAVGG  242 (296)
Q Consensus       164 ~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~i~~~~~~~g~d~vld~~g~  242 (296)
                      +++|+|++|.+|..+++.+ ...|.+|++++++.++...+.+.+...+ .+..+    .+.+.+..  +++|+++++.+.
T Consensus         2 ~vlItG~~G~iG~~l~~~L-~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~D~~~----~~~l~~~~--~~~d~vi~~a~~   74 (328)
T TIGR03466         2 KVLVTGATGFVGSAVVRLL-LEQGEEVRVLVRPTSDRRNLEGLDVEIVEGDLRD----PASLRKAV--AGCRALFHVAAD   74 (328)
T ss_pred             eEEEECCccchhHHHHHHH-HHCCCEEEEEEecCccccccccCCceEEEeeCCC----HHHHHHHH--hCCCEEEEecee
Confidence            6899999999999988888 4579999999987766543333343222 23333    12344433  267999998753

The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.

>TIGR01214 rmlD dTDP-4-dehydrorhamnose reductase

Probab=93.44  E-value=0.24  Score=43.77  Aligned_cols=60  Identities=20%  Similarity=0.243  Sum_probs=41.3

Q ss_pred             EEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCcEEEEcCCchhHHHHHHHHhCCCcccEEEECCCC
Q psy1959         164 TVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNKVLEVSGGKYANVVFEAVGG  242 (296)
Q Consensus       164 ~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~g~d~vld~~g~  242 (296)
                      +|+|+|++|.+|..+++.+ ...|.+|++++++.              .+..+    .+.+.+...+..+|+++++.+.
T Consensus         1 kilv~G~tG~iG~~l~~~l-~~~g~~v~~~~r~~--------------~d~~~----~~~~~~~~~~~~~d~vi~~a~~   60 (287)
T TIGR01214         1 RILITGANGQLGRELVQQL-SPEGRVVVALTSSQ--------------LDLTD----PEALERLLRAIRPDAVVNTAAY   60 (287)
T ss_pred             CEEEEcCCCHHHHHHHHHH-HhcCCEEEEeCCcc--------------cCCCC----HHHHHHHHHhCCCCEEEECCcc
Confidence            4799999999999999988 45799999988741              12222    1223333333367999998874

This enzyme catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS core antigen, O-antigen, etc.

>KOG1199|consensus

Probab=93.43  E-value=0.66  Score=38.21  Aligned_cols=81  Identities=21%  Similarity=0.244  Sum_probs=57.5

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcch-HHHHHhcCCcEEEEcCC---chhHHHHHHHHhCC-CcccE
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDK-TDLIRQKGAWAALTFTN---EKSLVNKVLEVSGG-KYANV  235 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~-~~~~~~~g~~~~~~~~~---~~~~~~~i~~~~~~-~g~d~  235 (296)
                      +|-.-+|+|+.+++|.++..-+.+ .|+.|+..+...+| .+.++++|-..++..-+   .++....+...-.. ...|+
T Consensus         8 kglvalvtggasglg~ataerlak-qgasv~lldlp~skg~~vakelg~~~vf~padvtsekdv~aala~ak~kfgrld~   86 (260)
T KOG1199|consen    8 KGLVALVTGGASGLGKATAERLAK-QGASVALLDLPQSKGADVAKELGGKVVFTPADVTSEKDVRAALAKAKAKFGRLDA   86 (260)
T ss_pred             cCeeEEeecCcccccHHHHHHHHh-cCceEEEEeCCcccchHHHHHhCCceEEeccccCcHHHHHHHHHHHHhhccceee
Confidence            566779999999999998887734 69999999987776 45678898766665433   13443333333221 25899


Q ss_pred             EEECCCC
Q psy1959         236 VFEAVGG  242 (296)
Q Consensus       236 vld~~g~  242 (296)
                      .++|.|.
T Consensus        87 ~vncagi   93 (260)
T KOG1199|consen   87 LVNCAGI   93 (260)
T ss_pred             eeeccce
Confidence            9999985

>PF08659 KR: KR domain; InterPro: IPR013968 This domain is found in bacterial polyketide synthases that catalyse the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain

Probab=93.35  E-value=0.65  Score=38.44  Aligned_cols=79  Identities=19%  Similarity=0.215  Sum_probs=45.3

Q ss_pred             EEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCc----c---hHHHHHhcCCcEEE---EcCCchhHHHHHHHHhCC-Cc
Q psy1959         164 TVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSE----D---KTDLIRQKGAWAAL---TFTNEKSLVNKVLEVSGG-KY  232 (296)
Q Consensus       164 ~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~----~---~~~~~~~~g~~~~~---~~~~~~~~~~~i~~~~~~-~g  232 (296)
                      +++|+|+.|++|+..++........+++++.++.    +   ..+.+++.|....+   +..+.....+.+.+.... ..
T Consensus         2 tylitGG~gglg~~la~~La~~~~~~~il~~r~~~~~~~~~~~i~~l~~~g~~v~~~~~Dv~d~~~v~~~~~~~~~~~~~   81 (181)
T PF08659_consen    2 TYLITGGLGGLGQSLARWLAERGARRLILLGRSGAPSAEAEAAIRELESAGARVEYVQCDVTDPEAVAAALAQLRQRFGP   81 (181)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTT-SEEEEEESSGGGSTTHHHHHHHHHHTT-EEEEEE--TTSHHHHHHHHHTSHTTSS-
T ss_pred             EEEEECCccHHHHHHHHHHHHcCCCEEEEeccCCCccHHHHHHHHHHHhCCCceeeeccCccCHHHHHHHHHHHHhccCC
Confidence            6899999999999988887454455999999882    1   23444556664332   223323444444443322 36


Q ss_pred             ccEEEECCCC
Q psy1959         233 ANVVFEAVGG  242 (296)
Q Consensus       233 ~d~vld~~g~  242 (296)
                      ++.||.+.|.
T Consensus        82 i~gVih~ag~   91 (181)
T PF08659_consen   82 IDGVIHAAGV   91 (181)
T ss_dssp             EEEEEE----
T ss_pred             cceeeeeeee
Confidence            8999998874

It uses NADPH to reduce the keto group to a hydroxy group. ; PDB: 3QP9_D 2FR0_A 2FR1_A 2Z5L_A 3SLK_B 3MJE_B 3MJC_A 3MJT_B 3MJV_A 3MJS_B ....

>PLN00015 protochlorophyllide reductase

Probab=93.33  E-value=0.35  Score=43.60  Aligned_cols=76  Identities=21%  Similarity=0.205  Sum_probs=47.8

Q ss_pred             EEEcCCCcHHHHHHHHHHHhCC-CEEEEEeCCcchHHHHH-hcC---CcE---EEEcCCchhHHHHHHHHhC-CCcccEE
Q psy1959         166 LVTAAGGGLGLAAVDMATKIYK-AKVIGVCNSEDKTDLIR-QKG---AWA---ALTFTNEKSLVNKVLEVSG-GKYANVV  236 (296)
Q Consensus       166 lI~Ga~g~vG~aa~~la~~~~g-~~Vi~~~~~~~~~~~~~-~~g---~~~---~~~~~~~~~~~~~i~~~~~-~~g~d~v  236 (296)
                      +|+|+++++|.++++.+ ...| ++|+.+++++++.+.+. +++   ...   ..+..+..+..+.+.+... ...+|++
T Consensus         1 lITGas~GIG~aia~~l-~~~G~~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~~~~iD~l   79 (308)
T PLN00015          1 IITGASSGLGLATAKAL-AETGKWHVVMACRDFLKAERAAKSAGMPKDSYTVMHLDLASLDSVRQFVDNFRRSGRPLDVL   79 (308)
T ss_pred             CEeCCCChHHHHHHHHH-HHCCCCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEEecCCCHHHHHHHHHHHHhcCCCCCEE
Confidence            58899999999977666 3468 89999998877665443 322   111   1334442333333433322 2368999


Q ss_pred             EECCCC
Q psy1959         237 FEAVGG  242 (296)
Q Consensus       237 ld~~g~  242 (296)
                      +++.|.
T Consensus        80 InnAG~   85 (308)
T PLN00015         80 VCNAAV   85 (308)
T ss_pred             EECCCc
Confidence            999874

>PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional

Probab=93.32  E-value=0.49  Score=43.31  Aligned_cols=75  Identities=13%  Similarity=0.035  Sum_probs=44.8

Q ss_pred             EEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCcEEEEcCCchhHHHHHHHHhCCCcccEEEECCC
Q psy1959         164 TVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNKVLEVSGGKYANVVFEAVG  241 (296)
Q Consensus       164 ~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~g~d~vld~~g  241 (296)
                      +|+|+|++|-+|...++.+....|.+|++++++.++...+........+..+- .+-.+.+.++.  +++|+||.+.+
T Consensus         3 ~ilVtGatGfiGs~l~~~L~~~~~~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl-~~~~~~~~~~~--~~~d~ViH~aa   77 (347)
T PRK11908          3 KVLILGVNGFIGHHLSKRILETTDWEVYGMDMQTDRLGDLVNHPRMHFFEGDI-TINKEWIEYHV--KKCDVILPLVA   77 (347)
T ss_pred             EEEEECCCcHHHHHHHHHHHhCCCCeEEEEeCcHHHHHHhccCCCeEEEeCCC-CCCHHHHHHHH--cCCCEEEECcc
Confidence            69999999999999888873333689999998665544332211112222111 10112233333  26899999765

>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain

Probab=93.30  E-value=0.76  Score=33.49  Aligned_cols=76  Identities=21%  Similarity=0.159  Sum_probs=50.2

Q ss_pred             EEEEEcCCCcHHHHHHHHHHHhCC---CEEEEE-eCCcchHHHHHh-cCCcEEEEcCCchhHHHHHHHHhCCCcccEEEE
Q psy1959         164 TVLVTAAGGGLGLAAVDMATKIYK---AKVIGV-CNSEDKTDLIRQ-KGAWAALTFTNEKSLVNKVLEVSGGKYANVVFE  238 (296)
Q Consensus       164 ~vlI~Ga~g~vG~aa~~la~~~~g---~~Vi~~-~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~~~g~d~vld  238 (296)
                      +|.+.|+ |.+|.+.++-. ...|   .+|+.+ ++++++.+.+++ .+... ...    +..+.+.      ..|++|-
T Consensus         1 kI~iIG~-G~mg~al~~~l-~~~g~~~~~v~~~~~r~~~~~~~~~~~~~~~~-~~~----~~~~~~~------~advvil   67 (96)
T PF03807_consen    1 KIGIIGA-GNMGSALARGL-LASGIKPHEVIIVSSRSPEKAAELAKEYGVQA-TAD----DNEEAAQ------EADVVIL   67 (96)
T ss_dssp             EEEEEST-SHHHHHHHHHH-HHTTS-GGEEEEEEESSHHHHHHHHHHCTTEE-ESE----EHHHHHH------HTSEEEE
T ss_pred             CEEEECC-CHHHHHHHHHH-HHCCCCceeEEeeccCcHHHHHHHHHhhcccc-ccC----ChHHhhc------cCCEEEE
Confidence            4678886 99999988877 4567   789855 899998887754 55322 211    1222221      4789999


Q ss_pred             CCCCccHHHHHHHh
Q psy1959         239 AVGGEDKTDLIRQK  252 (296)
Q Consensus       239 ~~g~~~~~~~~~~l  252 (296)
                      |+-...+...++.+
T Consensus        68 av~p~~~~~v~~~i   81 (96)
T PF03807_consen   68 AVKPQQLPEVLSEI   81 (96)
T ss_dssp             -S-GGGHHHHHHHH
T ss_pred             EECHHHHHHHHHHH
Confidence            99987777766665

It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....

>PRK07578 short chain dehydrogenase; Provisional

Probab=93.27  E-value=0.5  Score=39.37  Aligned_cols=64  Identities=25%  Similarity=0.258  Sum_probs=42.6

Q ss_pred             EEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCcEEEEcCCchhHHHHHHHHhCCCcccEEEECCCC
Q psy1959         164 TVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNKVLEVSGGKYANVVFEAVGG  242 (296)
Q Consensus       164 ~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~g~d~vld~~g~  242 (296)
                      +++|.|+++++|.+.+..+.+ . .+|+.+++++.          ....+..+..+..+.+.+ .  .++|+++.+.|.
T Consensus         2 ~vlItGas~giG~~la~~l~~-~-~~vi~~~r~~~----------~~~~D~~~~~~~~~~~~~-~--~~id~lv~~ag~   65 (199)
T PRK07578          2 KILVIGASGTIGRAVVAELSK-R-HEVITAGRSSG----------DVQVDITDPASIRALFEK-V--GKVDAVVSAAGK   65 (199)
T ss_pred             eEEEEcCCcHHHHHHHHHHHh-c-CcEEEEecCCC----------ceEecCCChHHHHHHHHh-c--CCCCEEEECCCC
Confidence            689999999999987776633 4 89999887643          122344442333333333 2  268999999884

>PLN02686 cinnamoyl-CoA reductase

Probab=93.25  E-value=0.52  Score=43.72  Aligned_cols=45  Identities=27%  Similarity=0.226  Sum_probs=35.6

Q ss_pred             CCCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHh
Q psy1959         160 KEKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQ  205 (296)
Q Consensus       160 ~~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~  205 (296)
                      ..+++|+|+|++|.+|..+++.+ ...|++|+++.++.++.+.+++
T Consensus        51 ~~~k~VLVTGatGfIG~~lv~~L-~~~G~~V~~~~r~~~~~~~l~~   95 (367)
T PLN02686         51 AEARLVCVTGGVSFLGLAIVDRL-LRHGYSVRIAVDTQEDKEKLRE   95 (367)
T ss_pred             CCCCEEEEECCchHHHHHHHHHH-HHCCCEEEEEeCCHHHHHHHHH
Confidence            46789999999999999998887 4579999888777665554443

>PRK06924 short chain dehydrogenase; Provisional

Probab=93.25  E-value=0.69  Score=39.90  Aligned_cols=40  Identities=23%  Similarity=0.324  Sum_probs=31.4

Q ss_pred             cEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCc-chHHHH
Q psy1959         163 QTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSE-DKTDLI  203 (296)
Q Consensus       163 ~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~-~~~~~~  203 (296)
                      ++++|+|++|++|.+.++.+ ...|++|+++++++ ++...+
T Consensus         2 k~vlItGasggiG~~ia~~l-~~~g~~V~~~~r~~~~~~~~~   42 (251)
T PRK06924          2 RYVIITGTSQGLGEAIANQL-LEKGTHVISISRTENKELTKL   42 (251)
T ss_pred             cEEEEecCCchHHHHHHHHH-HhcCCEEEEEeCCchHHHHHH
Confidence            47999999999999988877 44799999999876 333333

>PLN02781 Probable caffeoyl-CoA O-methyltransferase

Probab=93.23  E-value=0.94  Score=39.34  Aligned_cols=104  Identities=8%  Similarity=0.072  Sum_probs=66.6

Q ss_pred             HHcCCCCCcEEEEEcCCCcHHHHHHHHHHHhC-CCEEEEEeCCcchHHHHHh----cCCcEEEEcCCchhHHHHHHHHhC
Q psy1959         155 RHAKLKEKQTVLVTAAGGGLGLAAVDMATKIY-KAKVIGVCNSEDKTDLIRQ----KGAWAALTFTNEKSLVNKVLEVSG  229 (296)
Q Consensus       155 ~~~~~~~g~~vlI~Ga~g~vG~aa~~la~~~~-g~~Vi~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~~~i~~~~~  229 (296)
                      .+.+..+.++|+=.|  .+.|..++.+++... +.+|+.++.+++..+.+++    .|....+.... .+..+.+.++..
T Consensus        62 ~l~~~~~~~~vLEiG--t~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~-gda~~~L~~l~~  138 (234)
T PLN02781         62 MLVKIMNAKNTLEIG--VFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQ-SDALSALDQLLN  138 (234)
T ss_pred             HHHHHhCCCEEEEec--CcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEE-ccHHHHHHHHHh
Confidence            455666788999888  456777777773323 4599999999988777754    35433222222 234444444421


Q ss_pred             ---CCcccEEEECCCC----ccHHHHHHHhhccCceEEee
Q psy1959         230 ---GKYANVVFEAVGG----EDKTDLIRQKGAWAALTFTN  262 (296)
Q Consensus       230 ---~~g~d~vld~~g~----~~~~~~~~~lg~~~g~~~~~  262 (296)
                         ...+|++|-....    ..+..+++.+ ++||.+.++
T Consensus       139 ~~~~~~fD~VfiDa~k~~y~~~~~~~~~ll-~~GG~ii~d  177 (234)
T PLN02781        139 NDPKPEFDFAFVDADKPNYVHFHEQLLKLV-KVGGIIAFD  177 (234)
T ss_pred             CCCCCCCCEEEECCCHHHHHHHHHHHHHhc-CCCeEEEEE
Confidence               2479988865432    3577788888 889988653

>PLN02662 cinnamyl-alcohol dehydrogenase family protein

Probab=93.20  E-value=0.37  Score=43.41  Aligned_cols=39  Identities=21%  Similarity=0.135  Sum_probs=32.1

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchH
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKT  200 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~  200 (296)
                      .+.+|+|+|++|.+|...+..+ ...|.+|++++++.++.
T Consensus         3 ~~~~ilVtGatGfIG~~l~~~L-~~~g~~V~~~~r~~~~~   41 (322)
T PLN02662          3 EGKVVCVTGASGYIASWLVKLL-LQRGYTVKATVRDPNDP   41 (322)
T ss_pred             CCCEEEEECChHHHHHHHHHHH-HHCCCEEEEEEcCCCch
Confidence            3678999999999999988888 45799999988876543

>PLN02589 caffeoyl-CoA O-methyltransferase

Probab=93.18  E-value=1.1  Score=39.32  Aligned_cols=104  Identities=11%  Similarity=0.064  Sum_probs=69.1

Q ss_pred             HHcCCCCCcEEEEEcCCCcHHHHHHHHHHHhC--CCEEEEEeCCcchHHHHHh----cCCcEEEEcCCchhHHHHHHHHh
Q psy1959         155 RHAKLKEKQTVLVTAAGGGLGLAAVDMATKIY--KAKVIGVCNSEDKTDLIRQ----KGAWAALTFTNEKSLVNKVLEVS  228 (296)
Q Consensus       155 ~~~~~~~g~~vlI~Ga~g~vG~aa~~la~~~~--g~~Vi~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~~~i~~~~  228 (296)
                      ...+....++||=+|  ..+|+.++.+| +..  +.+|+.++.+++..+.+++    .|....+.... .+..+.+.++.
T Consensus        73 ~l~~~~~ak~iLEiG--T~~GySal~la-~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~-G~a~e~L~~l~  148 (247)
T PLN02589         73 MLLKLINAKNTMEIG--VYTGYSLLATA-LALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFRE-GPALPVLDQMI  148 (247)
T ss_pred             HHHHHhCCCEEEEEe--ChhhHHHHHHH-hhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEe-ccHHHHHHHHH
Confidence            344555668899888  67899999998 443  5699999999887776654    45433333322 34445555543


Q ss_pred             C----CCcccEEEECCCC----ccHHHHHHHhhccCceEEeec
Q psy1959         229 G----GKYANVVFEAVGG----EDKTDLIRQKGAWAALTFTNE  263 (296)
Q Consensus       229 ~----~~g~d~vld~~g~----~~~~~~~~~lg~~~g~~~~~~  263 (296)
                      .    ...+|++|--..-    ..+..+++++ ++||.+.++.
T Consensus       149 ~~~~~~~~fD~iFiDadK~~Y~~y~~~~l~ll-~~GGviv~DN  190 (247)
T PLN02589        149 EDGKYHGTFDFIFVDADKDNYINYHKRLIDLV-KVGGVIGYDN  190 (247)
T ss_pred             hccccCCcccEEEecCCHHHhHHHHHHHHHhc-CCCeEEEEcC
Confidence            2    1479977765553    3577888888 9999886543

>TIGR01831 fabG_rel 3-oxoacyl-(acyl-carrier-protein) reductase, putative

Probab=93.16  E-value=0.67  Score=39.66  Aligned_cols=77  Identities=18%  Similarity=0.095  Sum_probs=46.0

Q ss_pred             EEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCc-chHHH----HHhcCCcEE---EEcCCchhHHHHHHHHh-CCCcccE
Q psy1959         165 VLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSE-DKTDL----IRQKGAWAA---LTFTNEKSLVNKVLEVS-GGKYANV  235 (296)
Q Consensus       165 vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~-~~~~~----~~~~g~~~~---~~~~~~~~~~~~i~~~~-~~~g~d~  235 (296)
                      ++|+|++|++|...++.+ ...|++|++++++. ++.+.    +++.+....   .+..+..+....+.+.. ....+|.
T Consensus         1 vlItGas~giG~~~a~~l-~~~G~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~i~~   79 (239)
T TIGR01831         1 VLVTGASRGIGRAIANRL-AADGFEICVHYHSGRSDAESVVSAIQAQGGNARLLQFDVADRVACRTLLEADIAEHGAYYG   79 (239)
T ss_pred             CEEeCCCchHHHHHHHHH-HHCCCEEEEEeCCCHHHHHHHHHHHHHcCCeEEEEEccCCCHHHHHHHHHHHHHHcCCCCE
Confidence            589999999999988887 45799998887643 33322    223333221   23333233333333321 1236899


Q ss_pred             EEECCCC
Q psy1959         236 VFEAVGG  242 (296)
Q Consensus       236 vld~~g~  242 (296)
                      ++.+.|.
T Consensus        80 li~~ag~   86 (239)
T TIGR01831        80 VVLNAGI   86 (239)
T ss_pred             EEECCCC
Confidence            9998873

This model represents a small, very well conserved family of proteins closely related to the FabG family, TIGR01830, and possibly equal in function. In all completed genomes with a member of this family, a FabG in TIGR01830 is also found.

>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=93.15  E-value=1.5  Score=37.32  Aligned_cols=100  Identities=17%  Similarity=0.135  Sum_probs=64.7

Q ss_pred             HHcCCCCCcEEEEEcCCCcHHHHHHHHHHHhCC--CEEEEEeCCcchHHHHHh----cCCcEE-EEcCCchhHHHHHHHH
Q psy1959         155 RHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYK--AKVIGVCNSEDKTDLIRQ----KGAWAA-LTFTNEKSLVNKVLEV  227 (296)
Q Consensus       155 ~~~~~~~g~~vlI~Ga~g~vG~aa~~la~~~~g--~~Vi~~~~~~~~~~~~~~----~g~~~~-~~~~~~~~~~~~i~~~  227 (296)
                      ....++++++||-.|+  +.|..+..++ +..+  .+|+.++.+++-.+.+++    .+...+ +...+   ....   .
T Consensus        70 ~~l~~~~g~~VLdIG~--GsG~~t~~la-~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd---~~~~---~  140 (212)
T PRK13942         70 ELLDLKEGMKVLEIGT--GSGYHAAVVA-EIVGKSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVGD---GTLG---Y  140 (212)
T ss_pred             HHcCCCCcCEEEEECC--cccHHHHHHH-HhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECC---cccC---C
Confidence            5667889999999984  5577777777 4343  699999999887766654    343322 11111   0000   1


Q ss_pred             hCCCcccEEEECCCC-ccHHHHHHHhhccCceEEeecc
Q psy1959         228 SGGKYANVVFEAVGG-EDKTDLIRQKGAWAALTFTNEK  264 (296)
Q Consensus       228 ~~~~g~d~vld~~g~-~~~~~~~~~lg~~~g~~~~~~~  264 (296)
                      .....+|+++-.... ......+++| +.+|.+.+...
T Consensus       141 ~~~~~fD~I~~~~~~~~~~~~l~~~L-kpgG~lvi~~~  177 (212)
T PRK13942        141 EENAPYDRIYVTAAGPDIPKPLIEQL-KDGGIMVIPVG  177 (212)
T ss_pred             CcCCCcCEEEECCCcccchHHHHHhh-CCCcEEEEEEc
Confidence            123468998765554 5667788888 99998866543

>TIGR01181 dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase

Probab=93.07  E-value=0.39  Score=42.84  Aligned_cols=74  Identities=15%  Similarity=0.126  Sum_probs=43.2

Q ss_pred             EEEEEcCCCcHHHHHHHHHHHhCC--CEEEEEeCCc--chHHHHHhcCC---cEEE--EcCCchhHHHHHHHHhCCCccc
Q psy1959         164 TVLVTAAGGGLGLAAVDMATKIYK--AKVIGVCNSE--DKTDLIRQKGA---WAAL--TFTNEKSLVNKVLEVSGGKYAN  234 (296)
Q Consensus       164 ~vlI~Ga~g~vG~aa~~la~~~~g--~~Vi~~~~~~--~~~~~~~~~g~---~~~~--~~~~~~~~~~~i~~~~~~~g~d  234 (296)
                      +|+|+|++|.+|..+++.+.+ .+  .+|+++++..  .+.+.+..+..   ...+  +..+    .+.+.++..+..+|
T Consensus         1 ~ilItGatG~iG~~l~~~l~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~----~~~~~~~~~~~~~d   75 (317)
T TIGR01181         1 RILVTGGAGFIGSNFVRYILN-EHPDAEVIVLDKLTYAGNLENLADLEDNPRYRFVKGDIGD----RELVSRLFTEHQPD   75 (317)
T ss_pred             CEEEEcCCchHHHHHHHHHHH-hCCCCEEEEecCCCcchhhhhhhhhccCCCcEEEEcCCcC----HHHHHHHHhhcCCC
Confidence            489999999999999987734 34  6898887532  22222222211   1122  2233    12333333223589


Q ss_pred             EEEECCCC
Q psy1959         235 VVFEAVGG  242 (296)
Q Consensus       235 ~vld~~g~  242 (296)
                      ++|++.+.
T Consensus        76 ~vi~~a~~   83 (317)
T TIGR01181        76 AVVHFAAE   83 (317)
T ss_pred             EEEEcccc
Confidence            99999974

This protein is related to UDP-glucose 4-epimerase (GalE) and likewise has an NAD cofactor.

>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E

Probab=93.01  E-value=1  Score=38.15  Aligned_cols=34  Identities=26%  Similarity=0.260  Sum_probs=27.3

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCC-EEEEEeCC
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKA-KVIGVCNS  196 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~-~Vi~~~~~  196 (296)
                      ...+|+|.|+ |++|..+++.+ ...|. +++++|.+
T Consensus        20 ~~~~VlviG~-GglGs~ia~~L-a~~Gv~~i~lvD~d   54 (202)
T TIGR02356        20 LNSHVLIIGA-GGLGSPAALYL-AGAGVGTIVIVDDD   54 (202)
T ss_pred             cCCCEEEECC-CHHHHHHHHHH-HHcCCCeEEEecCC
Confidence            4578999997 99999887777 45687 88888865

coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.

>PLN00016 RNA-binding protein; Provisional

Probab=92.98  E-value=0.73  Score=42.86  Aligned_cols=85  Identities=14%  Similarity=0.130  Sum_probs=53.0

Q ss_pred             CCcEEEEE----cCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHH-----------HhcCCcEEEEcCCchhHHHHHH
Q psy1959         161 EKQTVLVT----AAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLI-----------RQKGAWAALTFTNEKSLVNKVL  225 (296)
Q Consensus       161 ~g~~vlI~----Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~-----------~~~g~~~~~~~~~~~~~~~~i~  225 (296)
                      ...+|||+    |++|-+|..++..+ ...|.+|+++++++.+...+           ...+... +..+- .+    +.
T Consensus        51 ~~~~VLVt~~~~GatG~iG~~lv~~L-~~~G~~V~~l~R~~~~~~~~~~~~~~~~~~l~~~~v~~-v~~D~-~d----~~  123 (378)
T PLN00016         51 EKKKVLIVNTNSGGHAFIGFYLAKEL-VKAGHEVTLFTRGKEPSQKMKKEPFSRFSELSSAGVKT-VWGDP-AD----VK  123 (378)
T ss_pred             ccceEEEEeccCCCceeEhHHHHHHH-HHCCCEEEEEecCCcchhhhccCchhhhhHhhhcCceE-EEecH-HH----HH
Confidence            34689999    99999999988887 44699999999877653221           1223322 21111 22    22


Q ss_pred             HHhCCCcccEEEECCCCc--cHHHHHHHh
Q psy1959         226 EVSGGKYANVVFEAVGGE--DKTDLIRQK  252 (296)
Q Consensus       226 ~~~~~~g~d~vld~~g~~--~~~~~~~~l  252 (296)
                      +.....++|+|+++.+.+  .....++.+
T Consensus       124 ~~~~~~~~d~Vi~~~~~~~~~~~~ll~aa  152 (378)
T PLN00016        124 SKVAGAGFDVVYDNNGKDLDEVEPVADWA  152 (378)
T ss_pred             hhhccCCccEEEeCCCCCHHHHHHHHHHH
Confidence            323345899999998753  334445554

>PLN02696 1-deoxy-D-xylulose-5-phosphate reductoisomerase

Probab=92.93  E-value=1.6  Score=41.45  Aligned_cols=95  Identities=14%  Similarity=0.153  Sum_probs=60.7

Q ss_pred             cEEEEEcCCCcHHHHHHHHHHHhC-CCEEEEEeCCcc--h-HHHHHhcCCcEEEEcCCchhH------------------
Q psy1959         163 QTVLVTAAGGGLGLAAVDMATKIY-KAKVIGVCNSED--K-TDLIRQKGAWAALTFTNEKSL------------------  220 (296)
Q Consensus       163 ~~vlI~Ga~g~vG~aa~~la~~~~-g~~Vi~~~~~~~--~-~~~~~~~g~~~~~~~~~~~~~------------------  220 (296)
                      ++|.|+|++|.+|..++++.++.. .++|+++.....  . .+.++++.+..+...++ ...                  
T Consensus        58 KkI~ILGSTGSIGtqtLdVI~~~pd~f~vvaLaag~Ni~lL~~q~~~f~p~~v~v~d~-~~~~~l~~~l~~~~~~~~vl~  136 (454)
T PLN02696         58 KPISLLGSTGSIGTQTLDIVAENPDKFKVVALAAGSNVTLLADQVRKFKPKLVAVRNE-SLVDELKEALADLDDKPEIIP  136 (454)
T ss_pred             cEEEEecCCcHhhHHHHHHHHhCccccEEEEEECCCCHHHHHHHHHHhCCCEEEEcCH-HHHHHHHHhhcCCCCCcEEEE
Confidence            689999999999999999985432 457777764332  2 23345566665544432 111                  


Q ss_pred             -HHHHHHHhCCCcccEEEECCCC-ccHHHHHHHhhccCceE
Q psy1959         221 -VNKVLEVSGGKYANVVFEAVGG-EDKTDLIRQKGAWAALT  259 (296)
Q Consensus       221 -~~~i~~~~~~~g~d~vld~~g~-~~~~~~~~~lg~~~g~~  259 (296)
                       .+.+.++.....+|+|++++.+ ..+...+..+ ..|-.+
T Consensus       137 G~egl~~la~~~evDiVV~AIvG~aGL~pTl~AI-kaGK~V  176 (454)
T PLN02696        137 GEEGIVEVARHPEAVTVVTGIVGCAGLKPTVAAI-EAGKDI  176 (454)
T ss_pred             CHHHHHHHHcCCCCCEEEEeCccccchHHHHHHH-HCCCcE
Confidence             1233344444468999999988 6777778888 444333

>PRK13656 trans-2-enoyl-CoA reductase; Provisional

Probab=92.81  E-value=0.78  Score=42.87  Aligned_cols=82  Identities=17%  Similarity=0.216  Sum_probs=48.5

Q ss_pred             CCCcEEEEEcCCCcHHHH--HHHHHHHhCCCEEEEEeCCcc--h--------------HHHHHhcCCcEE-E--EcCCch
Q psy1959         160 KEKQTVLVTAAGGGLGLA--AVDMATKIYKAKVIGVCNSED--K--------------TDLIRQKGAWAA-L--TFTNEK  218 (296)
Q Consensus       160 ~~g~~vlI~Ga~g~vG~a--a~~la~~~~g~~Vi~~~~~~~--~--------------~~~~~~~g~~~~-~--~~~~~~  218 (296)
                      ..++++||+|+++++|++  .++.+ . .|++++++....+  +              .+.+++.|.... +  +..+.+
T Consensus        39 ~ggK~aLVTGaSsGIGlA~~IA~al-~-~GA~Vi~v~~~~~~~~~~~~tagwy~~~a~~~~a~~~G~~a~~i~~DVss~E  116 (398)
T PRK13656         39 NGPKKVLVIGASSGYGLASRIAAAF-G-AGADTLGVFFEKPGTEKKTGTAGWYNSAAFDKFAKAAGLYAKSINGDAFSDE  116 (398)
T ss_pred             CCCCEEEEECCCchHhHHHHHHHHH-H-cCCeEEEEecCcchhhhcccccccchHHHHHHHHHhcCCceEEEEcCCCCHH
Confidence            456899999999999999  34444 3 6998888874221  1              223445564322 2  223323


Q ss_pred             hHHHHHHHHhC-CCcccEEEECCCCc
Q psy1959         219 SLVNKVLEVSG-GKYANVVFEAVGGE  243 (296)
Q Consensus       219 ~~~~~i~~~~~-~~g~d~vld~~g~~  243 (296)
                      ...+.+.++.. -.++|+++++++..
T Consensus       117 ~v~~lie~I~e~~G~IDiLVnSaA~~  142 (398)
T PRK13656        117 IKQKVIELIKQDLGQVDLVVYSLASP  142 (398)
T ss_pred             HHHHHHHHHHHhcCCCCEEEECCccC
Confidence            33333333321 13699999999864

>PLN02650 dihydroflavonol-4-reductase

Probab=92.77  E-value=0.56  Score=42.98  Aligned_cols=41  Identities=24%  Similarity=0.104  Sum_probs=33.3

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHH
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDL  202 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~  202 (296)
                      ..++|||+|++|-+|...+..+ ...|.+|++++++.++...
T Consensus         4 ~~k~iLVTGatGfIGs~l~~~L-~~~G~~V~~~~r~~~~~~~   44 (351)
T PLN02650          4 QKETVCVTGASGFIGSWLVMRL-LERGYTVRATVRDPANVKK   44 (351)
T ss_pred             CCCEEEEeCCcHHHHHHHHHHH-HHCCCEEEEEEcCcchhHH
Confidence            4568999999999999988888 4579999998887655543

>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2

Probab=92.75  E-value=0.34  Score=41.41  Aligned_cols=100  Identities=14%  Similarity=0.087  Sum_probs=62.5

Q ss_pred             HHcCCCCCcEEEEEcCCCcHHHHHHHHHHHhCCC--EEEEEeCCcchHHHHHh----cCCcEE-EEcCCchhHHHHHHHH
Q psy1959         155 RHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKA--KVIGVCNSEDKTDLIRQ----KGAWAA-LTFTNEKSLVNKVLEV  227 (296)
Q Consensus       155 ~~~~~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~--~Vi~~~~~~~~~~~~~~----~g~~~~-~~~~~~~~~~~~i~~~  227 (296)
                      +..++++|++||-.|+  |.|+.++-++ ++.|.  +|+.++..++-.+.+++    ++...+ +...+ .  ..   ..
T Consensus        66 ~~L~l~pg~~VLeIGt--GsGY~aAlla-~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~gd-g--~~---g~  136 (209)
T PF01135_consen   66 EALDLKPGDRVLEIGT--GSGYQAALLA-HLVGPVGRVVSVERDPELAERARRNLARLGIDNVEVVVGD-G--SE---GW  136 (209)
T ss_dssp             HHTTC-TT-EEEEES---TTSHHHHHHH-HHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEES--G--GG---TT
T ss_pred             HHHhcCCCCEEEEecC--CCcHHHHHHH-HhcCccceEEEECccHHHHHHHHHHHHHhccCceeEEEcc-h--hh---cc
Confidence            6677999999999984  5578888888 44443  79999988775555543    455422 22222 1  00   11


Q ss_pred             hCCCcccEEEECCCCc-cHHHHHHHhhccCceEEeecc
Q psy1959         228 SGGKYANVVFEAVGGE-DKTDLIRQKGAWAALTFTNEK  264 (296)
Q Consensus       228 ~~~~g~d~vld~~g~~-~~~~~~~~lg~~~g~~~~~~~  264 (296)
                      .....+|.++-+.+-+ .-...+++| +.+|+..++..
T Consensus       137 ~~~apfD~I~v~~a~~~ip~~l~~qL-~~gGrLV~pi~  173 (209)
T PF01135_consen  137 PEEAPFDRIIVTAAVPEIPEALLEQL-KPGGRLVAPIG  173 (209)
T ss_dssp             GGG-SEEEEEESSBBSS--HHHHHTE-EEEEEEEEEES
T ss_pred             ccCCCcCEEEEeeccchHHHHHHHhc-CCCcEEEEEEc
Confidence            1123699999988874 556788888 99999877655

1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....

>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial

Probab=92.72  E-value=0.48  Score=45.58  Aligned_cols=77  Identities=19%  Similarity=0.234  Sum_probs=53.1

Q ss_pred             CCCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCc---------------------chHHHHHhcCCcEEEEcCCch
Q psy1959         160 KEKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSE---------------------DKTDLIRQKGAWAALTFTNEK  218 (296)
Q Consensus       160 ~~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~---------------------~~~~~~~~~g~~~~~~~~~~~  218 (296)
                      ..+++|+|.|+ |+.|+.++..+ +..|.+|++.+..+                     ...++++++|++..++.....
T Consensus       139 ~~~~~V~IIG~-GpaGl~aA~~l-~~~G~~V~i~e~~~~~gG~l~~gip~~~~~~~~~~~~~~~~~~~Gv~~~~~~~v~~  216 (467)
T TIGR01318       139 PTGKRVAVIGA-GPAGLACADIL-ARAGVQVVVFDRHPEIGGLLTFGIPSFKLDKAVLSRRREIFTAMGIEFHLNCEVGR  216 (467)
T ss_pred             CCCCeEEEECC-CHHHHHHHHHH-HHcCCeEEEEecCCCCCceeeecCccccCCHHHHHHHHHHHHHCCCEEECCCEeCC
Confidence            36889999997 99999999998 45799999888654                     245667788876554432101


Q ss_pred             hHHHHHHHHhCCCcccEEEECCCC
Q psy1959         219 SLVNKVLEVSGGKYANVVFEAVGG  242 (296)
Q Consensus       219 ~~~~~i~~~~~~~g~d~vld~~g~  242 (296)
                      +.  .+.+..  .++|.+|.++|.
T Consensus       217 ~~--~~~~~~--~~~D~vilAtGa  236 (467)
T TIGR01318       217 DI--SLDDLL--EDYDAVFLGVGT  236 (467)
T ss_pred             cc--CHHHHH--hcCCEEEEEeCC
Confidence            11  111222  268999999997

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.

>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=92.71  E-value=1.3  Score=36.44  Aligned_cols=52  Identities=12%  Similarity=0.012  Sum_probs=35.8

Q ss_pred             ccHHHHHHHHHHHHcCCCCCcEEEEEcCCCc-HHHHHHHHHHHhCCCEEEEEeCC
Q psy1959         143 ADSYSTAQIVFSRHAKLKEKQTVLVTAAGGG-LGLAAVDMATKIYKAKVIGVCNS  196 (296)
Q Consensus       143 ~~~~~ta~~~l~~~~~~~~g~~vlI~Ga~g~-vG~aa~~la~~~~g~~Vi~~~~~  196 (296)
                      |+....+...+.+...--.+.+++|.|+ |. +|..++..+ ...|++|+++.++
T Consensus        25 p~~~~a~v~l~~~~~~~l~gk~vlViG~-G~~~G~~~a~~L-~~~g~~V~v~~r~   77 (168)
T cd01080          25 PCTPAGILELLKRYGIDLAGKKVVVVGR-SNIVGKPLAALL-LNRNATVTVCHSK   77 (168)
T ss_pred             CChHHHHHHHHHHcCCCCCCCEEEEECC-cHHHHHHHHHHH-hhCCCEEEEEECC
Confidence            3334444445544443458999999998 65 699788888 4478898888865

NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a

>KOG1502|consensus

Probab=92.67  E-value=0.53  Score=42.81  Aligned_cols=77  Identities=18%  Similarity=0.114  Sum_probs=51.9

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchH---HHHHhcC-CcE---EEEcCCchhHHHHHHHHhCCCcc
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKT---DLIRQKG-AWA---ALTFTNEKSLVNKVLEVSGGKYA  233 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~---~~~~~~g-~~~---~~~~~~~~~~~~~i~~~~~~~g~  233 (296)
                      .+..|.|+||+|=+|.+.+..+ ...|++|..++|+.++.   +.++++. +..   .+.. + ..-...+....  .|.
T Consensus         5 ~~~~VcVTGAsGfIgswivk~L-L~rGY~V~gtVR~~~~~k~~~~L~~l~~a~~~l~l~~a-D-L~d~~sf~~ai--~gc   79 (327)
T KOG1502|consen    5 EGKKVCVTGASGFIGSWIVKLL-LSRGYTVRGTVRDPEDEKKTEHLRKLEGAKERLKLFKA-D-LLDEGSFDKAI--DGC   79 (327)
T ss_pred             CCcEEEEeCCchHHHHHHHHHH-HhCCCEEEEEEcCcchhhhHHHHHhcccCcccceEEec-c-ccccchHHHHH--hCC
Confidence            5789999999999999999999 66899999999988863   3466653 322   1211 1 11112233332  368


Q ss_pred             cEEEECCCC
Q psy1959         234 NVVFEAVGG  242 (296)
Q Consensus       234 d~vld~~g~  242 (296)
                      |.||.+...
T Consensus        80 dgVfH~Asp   88 (327)
T KOG1502|consen   80 DGVFHTASP   88 (327)
T ss_pred             CEEEEeCcc
Confidence            899987663

>PLN00198 anthocyanidin reductase; Provisional

Probab=92.64  E-value=0.67  Score=42.17  Aligned_cols=39  Identities=15%  Similarity=0.069  Sum_probs=31.8

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchH
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKT  200 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~  200 (296)
                      .+.+|+|+|++|.+|...+..+ ...|.+|++++++.+..
T Consensus         8 ~~~~vlItG~~GfIG~~l~~~L-~~~g~~V~~~~r~~~~~   46 (338)
T PLN00198          8 GKKTACVIGGTGFLASLLIKLL-LQKGYAVNTTVRDPENQ   46 (338)
T ss_pred             CCCeEEEECCchHHHHHHHHHH-HHCCCEEEEEECCCCCH
Confidence            4788999999999999988888 44799998887765543

>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=92.61  E-value=0.73  Score=43.83  Aligned_cols=72  Identities=15%  Similarity=0.085  Sum_probs=47.8

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcch----HHHHHhcCCcEEEEcCCchhHHHHHHHHhCCCcccEE
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDK----TDLIRQKGAWAALTFTNEKSLVNKVLEVSGGKYANVV  236 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~----~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~g~d~v  236 (296)
                      .+++++|+|+ |++|.+++.++ +..|++|++.+.....    .+.+.+.|......... .+.   +     ..++|++
T Consensus         4 ~~k~v~v~G~-g~~G~s~a~~l-~~~G~~V~~~d~~~~~~~~~~~~l~~~g~~~~~~~~~-~~~---~-----~~~~d~v   72 (447)
T PRK02472          4 QNKKVLVLGL-AKSGYAAAKLL-HKLGANVTVNDGKPFSENPEAQELLEEGIKVICGSHP-LEL---L-----DEDFDLM   72 (447)
T ss_pred             CCCEEEEEee-CHHHHHHHHHH-HHCCCEEEEEcCCCccchhHHHHHHhcCCEEEeCCCC-HHH---h-----cCcCCEE
Confidence            4678999998 67999999999 5689999999865422    24455556543322222 211   1     1258999


Q ss_pred             EECCCCc
Q psy1959         237 FEAVGGE  243 (296)
Q Consensus       237 ld~~g~~  243 (296)
                      +.+.|-+
T Consensus        73 V~s~gi~   79 (447)
T PRK02472         73 VKNPGIP   79 (447)
T ss_pred             EECCCCC
Confidence            9988863

>TIGR02813 omega_3_PfaA polyketide-type polyunsaturated fatty acid synthase PfaA

Probab=92.57  E-value=0.71  Score=53.07  Aligned_cols=38  Identities=24%  Similarity=0.227  Sum_probs=30.9

Q ss_pred             CCCCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCC
Q psy1959         159 LKEKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNS  196 (296)
Q Consensus       159 ~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~  196 (296)
                      +.+++.++|+|+++++|..++..+.+..|++|+.+.++
T Consensus      1994 l~~g~vvLVTGGarGIG~aiA~~LA~~~ga~viL~gRs 2031 (2582)
T TIGR02813      1994 LNSDDVFLVTGGAKGVTFECALELAKQCQAHFILAGRS 2031 (2582)
T ss_pred             cCCCCEEEEeCCCCHHHHHHHHHHHHhcCCEEEEEeCC
Confidence            45789999999999999886655535568999999887

Members of the seed for this alignment are involved in omega-3 polyunsaturated fatty acid biosynthesis, such as the protein PfaA from the eicosapentaenoic acid biosynthesis operon in Photobacterium profundum strain SS9. PfaA is encoded together with PfaB, PfaC, and PfaD, and the functions of the individual polypeptides have not yet been described. More distant homologs of PfaA, also included with the reach of this model, appear to be involved in polyketide-like biosynthetic mechanisms of polyunsaturated fatty acid biosynthesis, an alternative to the more familiar iterated mechanism of chain extension and desaturation, and in most cases are encoded near genes for homologs of PfaB, PfaC, and/or PfaD.

>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=92.51  E-value=0.9  Score=43.73  Aligned_cols=70  Identities=23%  Similarity=0.195  Sum_probs=49.3

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcc-----hHHHHHhcCCcEEEEcCCchhHHHHHHHHhCCCcccE
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSED-----KTDLIRQKGAWAALTFTNEKSLVNKVLEVSGGKYANV  235 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~-----~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~g~d~  235 (296)
                      .+++|+|+|+ |.+|+.++.++ +..|.+|++++..+.     ..+.+++.|+........ .          ....+|+
T Consensus        15 ~~~~v~viG~-G~~G~~~A~~L-~~~G~~V~~~d~~~~~~~~~~~~~l~~~gv~~~~~~~~-~----------~~~~~D~   81 (480)
T PRK01438         15 QGLRVVVAGL-GVSGFAAADAL-LELGARVTVVDDGDDERHRALAAILEALGATVRLGPGP-T----------LPEDTDL   81 (480)
T ss_pred             CCCEEEEECC-CHHHHHHHHHH-HHCCCEEEEEeCCchhhhHHHHHHHHHcCCEEEECCCc-c----------ccCCCCE
Confidence            4679999997 99999999988 568999999986543     234466667654332221 1          0236899


Q ss_pred             EEECCCCc
Q psy1959         236 VFEAVGGE  243 (296)
Q Consensus       236 vld~~g~~  243 (296)
                      |+-+.|-.
T Consensus        82 Vv~s~Gi~   89 (480)
T PRK01438         82 VVTSPGWR   89 (480)
T ss_pred             EEECCCcC
Confidence            99999873

>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=92.50  E-value=0.8  Score=38.79  Aligned_cols=100  Identities=15%  Similarity=0.110  Sum_probs=64.2

Q ss_pred             HHcCCCCCcEEEEEcCCCcHHHHHHHHHHHhC-CCEEEEEeCCcchHHHHHh----cCCc---EEEEcCCchhHHHHHHH
Q psy1959         155 RHAKLKEKQTVLVTAAGGGLGLAAVDMATKIY-KAKVIGVCNSEDKTDLIRQ----KGAW---AALTFTNEKSLVNKVLE  226 (296)
Q Consensus       155 ~~~~~~~g~~vlI~Ga~g~vG~aa~~la~~~~-g~~Vi~~~~~~~~~~~~~~----~g~~---~~~~~~~~~~~~~~i~~  226 (296)
                      +...++++++||=.|+  |.|..+..+++... +.+|+.++.+++-.+.+++    .+..   .++..+-    .+.+  
T Consensus        66 ~~l~~~~~~~VLDiG~--GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~----~~~~--  137 (205)
T PRK13944         66 ELIEPRPGMKILEVGT--GSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDG----KRGL--  137 (205)
T ss_pred             HhcCCCCCCEEEEECc--CccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCc----ccCC--
Confidence            5667889999998885  45777777774321 3699999999886665553    3432   1222211    1111  


Q ss_pred             HhCCCcccEEEECCCC-ccHHHHHHHhhccCceEEeecc
Q psy1959         227 VSGGKYANVVFEAVGG-EDKTDLIRQKGAWAALTFTNEK  264 (296)
Q Consensus       227 ~~~~~g~d~vld~~g~-~~~~~~~~~lg~~~g~~~~~~~  264 (296)
                       .....+|+++-+... ......++.| +.+|.+.++..
T Consensus       138 -~~~~~fD~Ii~~~~~~~~~~~l~~~L-~~gG~lvi~~~  174 (205)
T PRK13944        138 -EKHAPFDAIIVTAAASTIPSALVRQL-KDGGVLVIPVE  174 (205)
T ss_pred             -ccCCCccEEEEccCcchhhHHHHHhc-CcCcEEEEEEc
Confidence             112479998877665 4556777888 89998866543

>PRK10675 UDP-galactose-4-epimerase; Provisional

Probab=92.48  E-value=0.72  Score=41.84  Aligned_cols=74  Identities=19%  Similarity=0.136  Sum_probs=43.9

Q ss_pred             EEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcch-H---HHHHhcC-Cc-EE--EEcCCchhHHHHHHHHhCCCcccE
Q psy1959         164 TVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDK-T---DLIRQKG-AW-AA--LTFTNEKSLVNKVLEVSGGKYANV  235 (296)
Q Consensus       164 ~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~-~---~~~~~~g-~~-~~--~~~~~~~~~~~~i~~~~~~~g~d~  235 (296)
                      +++|+|++|.+|...+..+ ...|.+|+++++..+. .   ..+.+.+ .. ..  .+..+ .   +.+.++....++|+
T Consensus         2 ~vlVtGatG~iG~~l~~~L-~~~g~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d-~---~~~~~~~~~~~~d~   76 (338)
T PRK10675          2 RVLVTGGSGYIGSHTCVQL-LQNGHDVVILDNLCNSKRSVLPVIERLGGKHPTFVEGDIRN-E---ALLTEILHDHAIDT   76 (338)
T ss_pred             eEEEECCCChHHHHHHHHH-HHCCCeEEEEecCCCchHhHHHHHHHhcCCCceEEEccCCC-H---HHHHHHHhcCCCCE
Confidence            5899999999999888877 4469999988753222 1   1222222 11 11  22333 1   22333332347999


Q ss_pred             EEECCCC
Q psy1959         236 VFEAVGG  242 (296)
Q Consensus       236 vld~~g~  242 (296)
                      ++++.+.
T Consensus        77 vvh~a~~   83 (338)
T PRK10675         77 VIHFAGL   83 (338)
T ss_pred             EEECCcc
Confidence            9998764

>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase

Probab=92.46  E-value=0.89  Score=36.23  Aligned_cols=73  Identities=19%  Similarity=0.216  Sum_probs=48.2

Q ss_pred             CCCcEEEEEcCCCcHHHHHHHHHHHhCC-CEEEEEeCCcchHHHHH-hcCCcE-EEEcCCchhHHHHHHHHhCCCcccEE
Q psy1959         160 KEKQTVLVTAAGGGLGLAAVDMATKIYK-AKVIGVCNSEDKTDLIR-QKGAWA-ALTFTNEKSLVNKVLEVSGGKYANVV  236 (296)
Q Consensus       160 ~~g~~vlI~Ga~g~vG~aa~~la~~~~g-~~Vi~~~~~~~~~~~~~-~~g~~~-~~~~~~~~~~~~~i~~~~~~~g~d~v  236 (296)
                      .++.+++|.|+ |.+|...++.+. ..| .+|++.+++.++.+.+. +++... .....   +..+.      -+++|++
T Consensus        17 ~~~~~i~iiG~-G~~g~~~a~~l~-~~g~~~v~v~~r~~~~~~~~~~~~~~~~~~~~~~---~~~~~------~~~~Dvv   85 (155)
T cd01065          17 LKGKKVLILGA-GGAARAVAYALA-ELGAAKIVIVNRTLEKAKALAERFGELGIAIAYL---DLEEL------LAEADLI   85 (155)
T ss_pred             CCCCEEEEECC-cHHHHHHHHHHH-HCCCCEEEEEcCCHHHHHHHHHHHhhcccceeec---chhhc------cccCCEE
Confidence            45789999997 999999888873 454 68999999887766543 444321 01111   11111      2478999


Q ss_pred             EECCCCc
Q psy1959         237 FEAVGGE  243 (296)
Q Consensus       237 ld~~g~~  243 (296)
                      +.|+...
T Consensus        86 i~~~~~~   92 (155)
T cd01065          86 INTTPVG   92 (155)
T ss_pred             EeCcCCC
Confidence            9999874

Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann

>PLN02476 O-methyltransferase

Probab=92.44  E-value=1.4  Score=39.37  Aligned_cols=106  Identities=6%  Similarity=0.095  Sum_probs=69.0

Q ss_pred             HHHHcCCCCCcEEEEEcCCCcHHHHHHHHHHHhC--CCEEEEEeCCcchHHHHHh----cCCcEEEEcCCchhHHHHHHH
Q psy1959         153 FSRHAKLKEKQTVLVTAAGGGLGLAAVDMATKIY--KAKVIGVCNSEDKTDLIRQ----KGAWAALTFTNEKSLVNKVLE  226 (296)
Q Consensus       153 l~~~~~~~~g~~vlI~Ga~g~vG~aa~~la~~~~--g~~Vi~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~~~i~~  226 (296)
                      +..+.+..+.++||=+|  ..+|..++.+| +..  +.+|+.++.+++..+.+++    .|...-+.... .+..+.+.+
T Consensus       110 L~~L~~~~~ak~VLEIG--T~tGySal~lA-~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~-GdA~e~L~~  185 (278)
T PLN02476        110 LAMLVQILGAERCIEVG--VYTGYSSLAVA-LVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKH-GLAAESLKS  185 (278)
T ss_pred             HHHHHHhcCCCeEEEec--CCCCHHHHHHH-HhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEE-cCHHHHHHH
Confidence            33556677889999888  56688888888 443  4589999999988777754    46543232222 233444444


Q ss_pred             Hh---CCCcccEEEECCCC----ccHHHHHHHhhccCceEEeec
Q psy1959         227 VS---GGKYANVVFEAVGG----EDKTDLIRQKGAWAALTFTNE  263 (296)
Q Consensus       227 ~~---~~~g~d~vld~~g~----~~~~~~~~~lg~~~g~~~~~~  263 (296)
                      +.   ....+|++|--...    +.++.+++.+ +++|.+.++.
T Consensus       186 l~~~~~~~~FD~VFIDa~K~~Y~~y~e~~l~lL-~~GGvIV~DN  228 (278)
T PLN02476        186 MIQNGEGSSYDFAFVDADKRMYQDYFELLLQLV-RVGGVIVMDN  228 (278)
T ss_pred             HHhcccCCCCCEEEECCCHHHHHHHHHHHHHhc-CCCcEEEEec
Confidence            32   12468977765543    3577888889 9999886553

>PRK06719 precorrin-2 dehydrogenase; Validated

Probab=92.44  E-value=0.88  Score=36.96  Aligned_cols=79  Identities=14%  Similarity=0.140  Sum_probs=52.1

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCcEEEEcCCchhHHHHHHHHhCCCcccEEEECC
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNKVLEVSGGKYANVVFEAV  240 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~g~d~vld~~  240 (296)
                      .|.+|+|.|+ |.+|..-++.+ ...|++|++++  ++..+.+++++... ....   .+.+     .+-.++|+|+-+.
T Consensus        12 ~~~~vlVvGG-G~va~rka~~L-l~~ga~V~VIs--p~~~~~l~~l~~i~-~~~~---~~~~-----~dl~~a~lViaaT   78 (157)
T PRK06719         12 HNKVVVIIGG-GKIAYRKASGL-KDTGAFVTVVS--PEICKEMKELPYIT-WKQK---TFSN-----DDIKDAHLIYAAT   78 (157)
T ss_pred             CCCEEEEECC-CHHHHHHHHHH-HhCCCEEEEEc--CccCHHHHhccCcE-EEec---ccCh-----hcCCCceEEEECC
Confidence            6789999998 99998877766 44799998884  44445555554211 1111   1111     1124789999999


Q ss_pred             CCccHHHHHHHh
Q psy1959         241 GGEDKTDLIRQK  252 (296)
Q Consensus       241 g~~~~~~~~~~l  252 (296)
                      +++..+..+...
T Consensus        79 ~d~e~N~~i~~~   90 (157)
T PRK06719         79 NQHAVNMMVKQA   90 (157)
T ss_pred             CCHHHHHHHHHH
Confidence            997777766666

>TIGR01179 galE UDP-glucose-4-epimerase

Probab=92.43  E-value=0.58  Score=41.89  Aligned_cols=74  Identities=15%  Similarity=0.146  Sum_probs=43.3

Q ss_pred             EEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcch-HHHHHhc---CCcEEE--EcCCchhHHHHHHHHhCCCcccEEE
Q psy1959         164 TVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDK-TDLIRQK---GAWAAL--TFTNEKSLVNKVLEVSGGKYANVVF  237 (296)
Q Consensus       164 ~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~-~~~~~~~---g~~~~~--~~~~~~~~~~~i~~~~~~~g~d~vl  237 (296)
                      +|+|+|++|.+|..+++.+ ...|.+|+++++...+ ...+...   +....+  +..+...+    .+.....++|+++
T Consensus         1 kvlV~GatG~iG~~l~~~l-~~~g~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~----~~~~~~~~~d~vv   75 (328)
T TIGR01179         1 KILVTGGAGYIGSHTVRQL-LESGHEVVVLDNLSNGSPEALKRGERITRVTFVEGDLRDRELL----DRLFEEHKIDAVI   75 (328)
T ss_pred             CEEEeCCCCHHHHHHHHHH-HhCCCeEEEEeCCCccchhhhhhhccccceEEEECCCCCHHHH----HHHHHhCCCcEEE
Confidence            4799999999999999888 4468899887653322 2222211   111112  22231222    2222224799999


Q ss_pred             ECCCC
Q psy1959         238 EAVGG  242 (296)
Q Consensus       238 d~~g~  242 (296)
                      ++.|.
T Consensus        76 ~~ag~   80 (328)
T TIGR01179        76 HFAGL   80 (328)
T ss_pred             ECccc
Confidence            99874

This enzyme interconverts UDP-glucose and UDP-galactose. A set of related proteins, some of which are tentatively identified as UDP-glucose-4-epimerase in Thermotoga maritima, Bacillus halodurans, and several archaea, but deeply branched from this set and lacking experimental evidence, are excluded from this model and described separately.

>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit

Probab=92.42  E-value=2.5  Score=31.84  Aligned_cols=101  Identities=15%  Similarity=0.144  Sum_probs=64.0

Q ss_pred             HHcCCCCCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHh----cCCcEE-EEcCCchhHHHHHHHHhC
Q psy1959         155 RHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQ----KGAWAA-LTFTNEKSLVNKVLEVSG  229 (296)
Q Consensus       155 ~~~~~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~----~g~~~~-~~~~~~~~~~~~i~~~~~  229 (296)
                      ....+.++++++-.|+ |. |..+..++++..+.+|+.++.++...+.+++    .+...+ +...+   ........  
T Consensus        13 ~~~~~~~~~~vldlG~-G~-G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~---~~~~~~~~--   85 (124)
T TIGR02469        13 SKLRLRPGDVLWDIGA-GS-GSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVSNIVIVEGD---APEALEDS--   85 (124)
T ss_pred             HHcCCCCCCEEEEeCC-CC-CHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCCceEEEecc---ccccChhh--
Confidence            4456677889999886 55 8889999954335799999999888777643    343322 11111   11101111  


Q ss_pred             CCcccEEEECCCC----ccHHHHHHHhhccCceEEeec
Q psy1959         230 GKYANVVFEAVGG----EDKTDLIRQKGAWAALTFTNE  263 (296)
Q Consensus       230 ~~g~d~vld~~g~----~~~~~~~~~lg~~~g~~~~~~  263 (296)
                      ...+|+++.....    +.+..+.+.| +++|.+.++.
T Consensus        86 ~~~~D~v~~~~~~~~~~~~l~~~~~~L-k~gG~li~~~  122 (124)
T TIGR02469        86 LPEPDRVFIGGSGGLLQEILEAIWRRL-RPGGRIVLNA  122 (124)
T ss_pred             cCCCCEEEECCcchhHHHHHHHHHHHc-CCCCEEEEEe
Confidence            2379999876543    2577788888 8888886543

This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.

>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases

Probab=92.42  E-value=0.32  Score=41.40  Aligned_cols=104  Identities=13%  Similarity=0.136  Sum_probs=66.1

Q ss_pred             HcCCCCCcEEEEEcCCCcHHHHHHHHHHHhC-CCEEEEEeCCcchHHHHHh----cCCcEEEEcCCchhHHHHHHHHhC-
Q psy1959         156 HAKLKEKQTVLVTAAGGGLGLAAVDMATKIY-KAKVIGVCNSEDKTDLIRQ----KGAWAALTFTNEKSLVNKVLEVSG-  229 (296)
Q Consensus       156 ~~~~~~g~~vlI~Ga~g~vG~aa~~la~~~~-g~~Vi~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~~~i~~~~~-  229 (296)
                      ..+....++||-+|  ..+|+.++.+|+... +.+|+.++.+++..+.+++    .|...-+.... .+..+.+.++.. 
T Consensus        40 l~~~~~~k~vLEIG--t~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~-gda~~~l~~l~~~  116 (205)
T PF01596_consen   40 LVRLTRPKRVLEIG--TFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIE-GDALEVLPELAND  116 (205)
T ss_dssp             HHHHHT-SEEEEES--TTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEE-S-HHHHHHHHHHT
T ss_pred             HHHhcCCceEEEec--cccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEE-eccHhhHHHHHhc
Confidence            34445668999998  677899999994322 5799999999998887754    35432222221 334444554432 


Q ss_pred             --CCcccEEEECCCC----ccHHHHHHHhhccCceEEeec
Q psy1959         230 --GKYANVVFEAVGG----EDKTDLIRQKGAWAALTFTNE  263 (296)
Q Consensus       230 --~~g~d~vld~~g~----~~~~~~~~~lg~~~g~~~~~~  263 (296)
                        ...+|+||--..-    ..+..+++++ +.+|.+.++.
T Consensus       117 ~~~~~fD~VFiDa~K~~y~~y~~~~~~ll-~~ggvii~DN  155 (205)
T PF01596_consen  117 GEEGQFDFVFIDADKRNYLEYFEKALPLL-RPGGVIIADN  155 (205)
T ss_dssp             TTTTSEEEEEEESTGGGHHHHHHHHHHHE-EEEEEEEEET
T ss_pred             cCCCceeEEEEcccccchhhHHHHHhhhc-cCCeEEEEcc
Confidence              2369977654443    2577788888 8888886654

The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....

>PLN02583 cinnamoyl-CoA reductase

Probab=92.40  E-value=1.2  Score=39.90  Aligned_cols=36  Identities=19%  Similarity=0.135  Sum_probs=30.5

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCc
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSE  197 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~  197 (296)
                      ++++|+|+|++|.+|..+++.+ ...|.+|+++.++.
T Consensus         5 ~~k~vlVTGatG~IG~~lv~~L-l~~G~~V~~~~R~~   40 (297)
T PLN02583          5 SSKSVCVMDASGYVGFWLVKRL-LSRGYTVHAAVQKN   40 (297)
T ss_pred             CCCEEEEECCCCHHHHHHHHHH-HhCCCEEEEEEcCc
Confidence            5678999999999999988887 45799999988753

>PF13602 ADH_zinc_N_2: Zinc-binding dehydrogenase; PDB: 3TQH_A 2VN8_A 3GOH_A 4A27_A

Probab=92.35  E-value=0.05  Score=42.02  Aligned_cols=44  Identities=20%  Similarity=0.235  Sum_probs=30.0

Q ss_pred             cCCcEEEEcCCchhHHHHHHHHhCCCcccEEEECCC--Cc-cHHHHHHHhhccCceE
Q psy1959         206 KGAWAALTFTNEKSLVNKVLEVSGGKYANVVFEAVG--GE-DKTDLIRQKGAWAALT  259 (296)
Q Consensus       206 ~g~~~~~~~~~~~~~~~~i~~~~~~~g~d~vld~~g--~~-~~~~~~~~lg~~~g~~  259 (296)
                      +|++.+++|+. .++       ....++|+|||++|  ++ .+..+++++  ++|++
T Consensus         1 LGAd~vidy~~-~~~-------~~~~~~D~ViD~~g~~~~~~~~~~~~~l--~~G~~   47 (127)
T PF13602_consen    1 LGADEVIDYRD-TDF-------AGPGGVDVVIDTVGQTGESLLDASRKLL--PGGRV   47 (127)
T ss_dssp             CT-SEEEETTC-SHH-------HTTS-EEEEEESS-CCHHHCGGGCCCTE--EEEEE
T ss_pred             CCcCEEecCCC-ccc-------cCCCCceEEEECCCCccHHHHHHHHHHC--CCCEE
Confidence            58999999986 555       44679999999999  54 346666777  55555

>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional

Probab=92.33  E-value=0.75  Score=42.22  Aligned_cols=49  Identities=22%  Similarity=0.229  Sum_probs=37.6

Q ss_pred             HHHHHHHHHcCCCCCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcc
Q psy1959         148 TAQIVFSRHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSED  198 (296)
Q Consensus       148 ta~~~l~~~~~~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~  198 (296)
                      |||.-+.....+ +.++|+|+|++|-+|..++..+ ...|.+|+++++...
T Consensus         2 ~~~~~~~~~~~~-~~~~vlVtGatGfiG~~lv~~L-~~~g~~V~~~d~~~~   50 (348)
T PRK15181          2 TAYEELRTKLVL-APKRWLITGVAGFIGSGLLEEL-LFLNQTVIGLDNFST   50 (348)
T ss_pred             chhhhhhhcccc-cCCEEEEECCccHHHHHHHHHH-HHCCCEEEEEeCCCC
Confidence            567666444444 3478999999999999988888 456899999987543

>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]

Probab=92.33  E-value=1.5  Score=33.93  Aligned_cols=32  Identities=19%  Similarity=0.288  Sum_probs=25.6

Q ss_pred             EEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeC
Q psy1959         164 TVLVTAAGGGLGLAAVDMATKIYKAKVIGVCN  195 (296)
Q Consensus       164 ~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~  195 (296)
                      +|+|+|++|-+|+.+++.+.+..+.++.....
T Consensus         2 rV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~   33 (124)
T PF01113_consen    2 RVGIVGASGRMGRAIAEAILESPGFELVGAVD   33 (124)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHSTTEEEEEEEE
T ss_pred             EEEEECCCCHHHHHHHHHHHhcCCcEEEEEEe
Confidence            68999999999999999996556777555543

In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....

>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus

Probab=92.26  E-value=1.4  Score=33.25  Aligned_cols=73  Identities=12%  Similarity=0.141  Sum_probs=52.3

Q ss_pred             EEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCcEEEEcCCchhHHHHHHHHhCCCcccEEEECCCCc
Q psy1959         165 VLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNKVLEVSGGKYANVVFEAVGGE  243 (296)
Q Consensus       165 vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~g~d~vld~~g~~  243 (296)
                      ++|.|. |.+|+..++.++ ..+.+|++++.++++.+.+++.|.. ++..+.  .-.+.++++ +-..++.++-+.+++
T Consensus         1 vvI~G~-g~~~~~i~~~L~-~~~~~vvvid~d~~~~~~~~~~~~~-~i~gd~--~~~~~l~~a-~i~~a~~vv~~~~~d   73 (116)
T PF02254_consen    1 VVIIGY-GRIGREIAEQLK-EGGIDVVVIDRDPERVEELREEGVE-VIYGDA--TDPEVLERA-GIEKADAVVILTDDD   73 (116)
T ss_dssp             EEEES--SHHHHHHHHHHH-HTTSEEEEEESSHHHHHHHHHTTSE-EEES-T--TSHHHHHHT-TGGCESEEEEESSSH
T ss_pred             eEEEcC-CHHHHHHHHHHH-hCCCEEEEEECCcHHHHHHHhcccc-cccccc--hhhhHHhhc-CccccCEEEEccCCH
Confidence            578897 999999999994 4667999999999999999998854 343322  112233333 345789999998874

The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....

>KOG1207|consensus

Probab=92.17  E-value=0.77  Score=37.96  Aligned_cols=81  Identities=19%  Similarity=0.063  Sum_probs=53.3

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCcEE--EEcCCchhHHHHHHHHhCCCcccEEEE
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAA--LTFTNEKSLVNKVLEVSGGKYANVVFE  238 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~~~--~~~~~~~~~~~~i~~~~~~~g~d~vld  238 (296)
                      .|..|+++|+..++|...++-+ ...|++|+++.+.++.+..+-..-....  +..+- ..|....+.+..-..+|..++
T Consensus         6 aG~~vlvTgagaGIG~~~v~~L-a~aGA~ViAvaR~~a~L~sLV~e~p~~I~Pi~~Dl-s~wea~~~~l~~v~pidgLVN   83 (245)
T KOG1207|consen    6 AGVIVLVTGAGAGIGKEIVLSL-AKAGAQVIAVARNEANLLSLVKETPSLIIPIVGDL-SAWEALFKLLVPVFPIDGLVN   83 (245)
T ss_pred             cceEEEeecccccccHHHHHHH-HhcCCEEEEEecCHHHHHHHHhhCCcceeeeEecc-cHHHHHHHhhcccCchhhhhc
Confidence            5788999999999999977776 4479999999999998877755433221  21111 334333333333335687778


Q ss_pred             CCCCc
Q psy1959         239 AVGGE  243 (296)
Q Consensus       239 ~~g~~  243 (296)
                      +.|-.
T Consensus        84 NAgvA   88 (245)
T KOG1207|consen   84 NAGVA   88 (245)
T ss_pred             cchhh
Confidence            77743

>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain

Probab=92.14  E-value=3.5  Score=35.03  Aligned_cols=81  Identities=17%  Similarity=0.187  Sum_probs=50.8

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcc-hHHHHHhcCCcEEEEcCCchhHHHHHHHHhCCCcccEEEEC
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSED-KTDLIRQKGAWAALTFTNEKSLVNKVLEVSGGKYANVVFEA  239 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~g~d~vld~  239 (296)
                      .|.+|+|.|+ |.+|..-++.+ ...|++|++++.... ....+.+.|--..+. .+ .. ...      -.++++|+-+
T Consensus         8 ~gk~vlVvGg-G~va~rk~~~L-l~~ga~VtVvsp~~~~~l~~l~~~~~i~~~~-~~-~~-~~d------l~~~~lVi~a   76 (205)
T TIGR01470         8 EGRAVLVVGG-GDVALRKARLL-LKAGAQLRVIAEELESELTLLAEQGGITWLA-RC-FD-ADI------LEGAFLVIAA   76 (205)
T ss_pred             CCCeEEEECc-CHHHHHHHHHH-HHCCCEEEEEcCCCCHHHHHHHHcCCEEEEe-CC-CC-HHH------hCCcEEEEEC
Confidence            4789999997 99999988888 458999998886443 333344444212111 11 11 111      1378999999


Q ss_pred             CCCccHHHHHHHh
Q psy1959         240 VGGEDKTDLIRQK  252 (296)
Q Consensus       240 ~g~~~~~~~~~~l  252 (296)
                      .+.+..+..+...
T Consensus        77 t~d~~ln~~i~~~   89 (205)
T TIGR01470        77 TDDEELNRRVAHA   89 (205)
T ss_pred             CCCHHHHHHHHHH
Confidence            9986555444433

This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.

>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]

Probab=92.06  E-value=0.49  Score=42.60  Aligned_cols=89  Identities=19%  Similarity=0.184  Sum_probs=60.6

Q ss_pred             CcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCcE-EEEcCCchhHHHHHHHHhCCCcccEEEECC
Q psy1959         162 KQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWA-ALTFTNEKSLVNKVLEVSGGKYANVVFEAV  240 (296)
Q Consensus       162 g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~i~~~~~~~g~d~vld~~  240 (296)
                      ...|.|+|+ |.+|.-++.+| .-+|++|...+.+.+|+..+.+..... ...+++...    +.+..  .++|++|.++
T Consensus       168 ~~kv~iiGG-GvvgtnaAkiA-~glgA~Vtild~n~~rl~~ldd~f~~rv~~~~st~~~----iee~v--~~aDlvIgaV  239 (371)
T COG0686         168 PAKVVVLGG-GVVGTNAAKIA-IGLGADVTILDLNIDRLRQLDDLFGGRVHTLYSTPSN----IEEAV--KKADLVIGAV  239 (371)
T ss_pred             CccEEEECC-ccccchHHHHH-hccCCeeEEEecCHHHHhhhhHhhCceeEEEEcCHHH----HHHHh--hhccEEEEEE
Confidence            345666786 99999999999 778999999999999999998754433 344444233    33332  3688888865


Q ss_pred             ---CCc----cHHHHHHHhhccCceE
Q psy1959         241 ---GGE----DKTDLIRQKGAWAALT  259 (296)
Q Consensus       241 ---g~~----~~~~~~~~lg~~~g~~  259 (296)
                         |..    ..++.++.| .++..+
T Consensus       240 LIpgakaPkLvt~e~vk~M-kpGsVi  264 (371)
T COG0686         240 LIPGAKAPKLVTREMVKQM-KPGSVI  264 (371)
T ss_pred             EecCCCCceehhHHHHHhc-CCCcEE
Confidence               221    355667777 555443

>PRK06718 precorrin-2 dehydrogenase; Reviewed

Probab=92.04  E-value=0.82  Score=38.80  Aligned_cols=81  Identities=10%  Similarity=0.093  Sum_probs=50.0

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcc-hHHHHHhcCCcEEEEcCCchhHHHHHHHHhCCCcccEEEEC
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSED-KTDLIRQKGAWAALTFTNEKSLVNKVLEVSGGKYANVVFEA  239 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~g~d~vld~  239 (296)
                      .|.+|+|.|+ |.+|...++.+ ...|++|+++..... .+..+.+.+.- .+....   +.+.     .-.++|+|+-+
T Consensus         9 ~~k~vLVIGg-G~va~~ka~~L-l~~ga~V~VIs~~~~~~l~~l~~~~~i-~~~~~~---~~~~-----~l~~adlViaa   77 (202)
T PRK06718          9 SNKRVVIVGG-GKVAGRRAITL-LKYGAHIVVISPELTENLVKLVEEGKI-RWKQKE---FEPS-----DIVDAFLVIAA   77 (202)
T ss_pred             CCCEEEEECC-CHHHHHHHHHH-HHCCCeEEEEcCCCCHHHHHHHhCCCE-EEEecC---CChh-----hcCCceEEEEc
Confidence            5789999998 99999887766 347899998875322 22222222221 111111   1110     12478999999


Q ss_pred             CCCccHHHHHHHh
Q psy1959         240 VGGEDKTDLIRQK  252 (296)
Q Consensus       240 ~g~~~~~~~~~~l  252 (296)
                      .+++..+..+...
T Consensus        78 T~d~elN~~i~~~   90 (202)
T PRK06718         78 TNDPRVNEQVKED   90 (202)
T ss_pred             CCCHHHHHHHHHH
Confidence            9997777766655

>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated

Probab=92.01  E-value=0.78  Score=43.17  Aligned_cols=75  Identities=21%  Similarity=0.257  Sum_probs=50.4

Q ss_pred             CCcEEEEEcC----------------CCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCcEEEEcCCchhHHHHH
Q psy1959         161 EKQTVLVTAA----------------GGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNKV  224 (296)
Q Consensus       161 ~g~~vlI~Ga----------------~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i  224 (296)
                      .|.+++|+|+                +|.+|.+.++.+ ...|++|++++++.+ .+.  ..+. ..++..+..+..+.+
T Consensus       187 ~gk~vlITgG~T~E~ID~VR~isN~SSG~~G~aiA~~l-~~~Ga~V~~v~~~~~-~~~--~~~~-~~~dv~~~~~~~~~v  261 (399)
T PRK05579        187 AGKRVLITAGPTREPIDPVRYITNRSSGKMGYALARAA-ARRGADVTLVSGPVN-LPT--PAGV-KRIDVESAQEMLDAV  261 (399)
T ss_pred             CCCEEEEeCCCccccccceeeeccCCcchHHHHHHHHH-HHCCCEEEEeCCCcc-ccC--CCCc-EEEccCCHHHHHHHH
Confidence            6899999998                666999999999 568999999987652 211  1122 233443334455555


Q ss_pred             HHHhCCCcccEEEECCCC
Q psy1959         225 LEVSGGKYANVVFEAVGG  242 (296)
Q Consensus       225 ~~~~~~~g~d~vld~~g~  242 (296)
                      .+..  ..+|+++.+.|-
T Consensus       262 ~~~~--~~~DilI~~Aav  277 (399)
T PRK05579        262 LAAL--PQADIFIMAAAV  277 (399)
T ss_pred             HHhc--CCCCEEEEcccc
Confidence            4443  258999999885

>PRK06849 hypothetical protein; Provisional

Probab=92.01  E-value=1.1  Score=41.98  Aligned_cols=80  Identities=14%  Similarity=0.121  Sum_probs=55.2

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCcEEEEc---C-CchhHHHHHHHHhCCCcccEE
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTF---T-NEKSLVNKVLEVSGGKYANVV  236 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~~~~~~---~-~~~~~~~~i~~~~~~~g~d~v  236 (296)
                      ...+|||+|+..+.|+..++.+ +..|.+|++++..+...... ...++..+..   . +...+.+.+.++....++|++
T Consensus         3 ~~~~VLI~G~~~~~~l~iar~l-~~~G~~Vi~~d~~~~~~~~~-s~~~d~~~~~p~p~~d~~~~~~~L~~i~~~~~id~v   80 (389)
T PRK06849          3 TKKTVLITGARAPAALELARLF-HNAGHTVILADSLKYPLSRF-SRAVDGFYTIPSPRWDPDAYIQALLSIVQRENIDLL   80 (389)
T ss_pred             CCCEEEEeCCCcHHHHHHHHHH-HHCCCEEEEEeCCchHHHHH-HHhhhheEEeCCCCCCHHHHHHHHHHHHHHcCCCEE
Confidence            4588999999778899999999 44799999999876543321 1223332221   1 224567777777666789999


Q ss_pred             EECCCC
Q psy1959         237 FEAVGG  242 (296)
Q Consensus       237 ld~~g~  242 (296)
                      +-+...
T Consensus        81 IP~~e~   86 (389)
T PRK06849         81 IPTCEE   86 (389)
T ss_pred             EECChH
Confidence            998875

>PLN02695 GDP-D-mannose-3',5'-epimerase

Probab=92.00  E-value=0.76  Score=42.69  Aligned_cols=37  Identities=22%  Similarity=0.151  Sum_probs=31.7

Q ss_pred             CCCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCc
Q psy1959         160 KEKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSE  197 (296)
Q Consensus       160 ~~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~  197 (296)
                      ..+++|+|+|++|-+|..++..+ ...|.+|+++++..
T Consensus        19 ~~~~~IlVtGgtGfIG~~l~~~L-~~~G~~V~~v~r~~   55 (370)
T PLN02695         19 SEKLRICITGAGGFIASHIARRL-KAEGHYIIASDWKK   55 (370)
T ss_pred             CCCCEEEEECCccHHHHHHHHHH-HhCCCEEEEEEecc
Confidence            36789999999999999999998 45799999998753

>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed

Probab=91.99  E-value=2  Score=36.02  Aligned_cols=96  Identities=16%  Similarity=0.076  Sum_probs=60.0

Q ss_pred             CCCCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHh----cCCcEEEEcCCchhHHHHHHHHhCCCccc
Q psy1959         159 LKEKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQ----KGAWAALTFTNEKSLVNKVLEVSGGKYAN  234 (296)
Q Consensus       159 ~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~~~i~~~~~~~g~d  234 (296)
                      ++++.+|+=.|+  |.|..+..++++..+++|+.++.+++..+.+++    .+.+. +.... .+..+ +   .....+|
T Consensus        43 l~~g~~VLDiGc--GtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~~-i~~~~-~d~~~-~---~~~~~fD  114 (187)
T PRK00107         43 LPGGERVLDVGS--GAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLKN-VTVVH-GRAEE-F---GQEEKFD  114 (187)
T ss_pred             cCCCCeEEEEcC--CCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCCC-EEEEe-ccHhh-C---CCCCCcc
Confidence            446889998886  335666666644457899999999887766653    45432 22211 12221 1   1134799


Q ss_pred             EEEECCCC---ccHHHHHHHhhccCceEEeec
Q psy1959         235 VVFEAVGG---EDKTDLIRQKGAWAALTFTNE  263 (296)
Q Consensus       235 ~vld~~g~---~~~~~~~~~lg~~~g~~~~~~  263 (296)
                      +++.....   ..+..+.++| +++|.+.+..
T Consensus       115 lV~~~~~~~~~~~l~~~~~~L-kpGG~lv~~~  145 (187)
T PRK00107        115 VVTSRAVASLSDLVELCLPLL-KPGGRFLALK  145 (187)
T ss_pred             EEEEccccCHHHHHHHHHHhc-CCCeEEEEEe
Confidence            99875432   3566788888 8999885543

>PRK10217 dTDP-glucose 4,6-dehydratase; Provisional

Probab=91.91  E-value=0.56  Score=42.95  Aligned_cols=75  Identities=12%  Similarity=0.075  Sum_probs=42.4

Q ss_pred             cEEEEEcCCCcHHHHHHHHHHHhCCCEEE-EEeCCcch--HHHHHhc--CCcE-E--EEcCCchhHHHHHHHHhCCCccc
Q psy1959         163 QTVLVTAAGGGLGLAAVDMATKIYKAKVI-GVCNSEDK--TDLIRQK--GAWA-A--LTFTNEKSLVNKVLEVSGGKYAN  234 (296)
Q Consensus       163 ~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi-~~~~~~~~--~~~~~~~--g~~~-~--~~~~~~~~~~~~i~~~~~~~g~d  234 (296)
                      .+|+|+|++|.+|..+++.+ ...|.+++ ++++.+.+  ...+...  +... .  .+..+..    .+.++....++|
T Consensus         2 ~~vlVtGatGfIG~~l~~~L-~~~g~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~----~~~~~~~~~~~D   76 (355)
T PRK10217          2 RKILITGGAGFIGSALVRYI-INETSDAVVVVDKLTYAGNLMSLAPVAQSERFAFEKVDICDRA----ELARVFTEHQPD   76 (355)
T ss_pred             cEEEEEcCCcHHHHHHHHHH-HHcCCCEEEEEecCccccchhhhhhcccCCceEEEECCCcChH----HHHHHHhhcCCC
Confidence            37999999999999999888 44677644 44443221  1112211  1111 1  2223312    233333223689


Q ss_pred             EEEECCCC
Q psy1959         235 VVFEAVGG  242 (296)
Q Consensus       235 ~vld~~g~  242 (296)
                      ++|++.+.
T Consensus        77 ~Vih~A~~   84 (355)
T PRK10217         77 CVMHLAAE   84 (355)
T ss_pred             EEEECCcc
Confidence            99999874

>PRK08309 short chain dehydrogenase; Provisional

Probab=91.89  E-value=1.1  Score=37.17  Aligned_cols=81  Identities=12%  Similarity=0.121  Sum_probs=49.6

Q ss_pred             EEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHh-cCC--c-EE--EEcCCchhHHHHHHHHhC-CCcccEE
Q psy1959         164 TVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQ-KGA--W-AA--LTFTNEKSLVNKVLEVSG-GKYANVV  236 (296)
Q Consensus       164 ~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~-~g~--~-~~--~~~~~~~~~~~~i~~~~~-~~g~d~v  236 (296)
                      +++|+|++|..|..+..++ + .|++|++.++++++.+.+.. ++.  . ..  .+..+..+..+.+.+... ...+|.+
T Consensus         2 ~vlVtGGtG~gg~la~~L~-~-~G~~V~v~~R~~~~~~~l~~~l~~~~~i~~~~~Dv~d~~sv~~~i~~~l~~~g~id~l   79 (177)
T PRK08309          2 HALVIGGTGMLKRVSLWLC-E-KGFHVSVIARREVKLENVKRESTTPESITPLPLDYHDDDALKLAIKSTIEKNGPFDLA   79 (177)
T ss_pred             EEEEECcCHHHHHHHHHHH-H-CcCEEEEEECCHHHHHHHHHHhhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCCCeEE
Confidence            5899999765555444555 3 69999999988777665543 221  1 11  245553455555555432 2368999


Q ss_pred             EECCCCccHH
Q psy1959         237 FEAVGGEDKT  246 (296)
Q Consensus       237 ld~~g~~~~~  246 (296)
                      |+.+..+.-.
T Consensus        80 v~~vh~~~~~   89 (177)
T PRK08309         80 VAWIHSSAKD   89 (177)
T ss_pred             EEeccccchh
Confidence            9988765433

>smart00822 PKS_KR This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain

Probab=91.87  E-value=1.1  Score=35.62  Aligned_cols=78  Identities=21%  Similarity=0.207  Sum_probs=45.5

Q ss_pred             EEEEEcCCCcHHHHHHHHHHHhCCC-EEEEEeCCcchH-------HHHHhcCCcEE-E--EcCCchhHHHHHHHHhC-CC
Q psy1959         164 TVLVTAAGGGLGLAAVDMATKIYKA-KVIGVCNSEDKT-------DLIRQKGAWAA-L--TFTNEKSLVNKVLEVSG-GK  231 (296)
Q Consensus       164 ~vlI~Ga~g~vG~aa~~la~~~~g~-~Vi~~~~~~~~~-------~~~~~~g~~~~-~--~~~~~~~~~~~i~~~~~-~~  231 (296)
                      +++|.|++|++|.++++.+ ...|. .|+.+.+++++.       +.+++.+.... +  +..+.....+.+.+... ..
T Consensus         2 ~~li~Ga~~~iG~~~~~~l-~~~g~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~   80 (180)
T smart00822        2 TYLITGGLGGLGLELARWL-AERGARHLVLLSRSGPDAPGAAELLAELEALGAEVTVVACDVADRAALAAALAAIPARLG   80 (180)
T ss_pred             EEEEEcCCChHHHHHHHHH-HHhhCCeEEEEeCCCCCCccHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence            6899999999999988777 34676 677777755432       23333343322 2  22221233333333221 23


Q ss_pred             cccEEEECCCC
Q psy1959         232 YANVVFEAVGG  242 (296)
Q Consensus       232 g~d~vld~~g~  242 (296)
                      .+|.++.+.|.
T Consensus        81 ~id~li~~ag~   91 (180)
T smart00822       81 PLRGVIHAAGV   91 (180)
T ss_pred             CeeEEEEcccc
Confidence            68999998873

It uses NADPH to reduce the keto group to a hydroxy group.

>TIGR00243 Dxr 1-deoxy-D-xylulose 5-phosphate reductoisomerase

Probab=91.72  E-value=3.2  Score=38.66  Aligned_cols=93  Identities=12%  Similarity=0.143  Sum_probs=59.4

Q ss_pred             cEEEEEcCCCcHHHHHHHHHHHhC-CCEEEEEeCCcc--h-HHHHHhcCCcEEEEcCCchhHH-----------------
Q psy1959         163 QTVLVTAAGGGLGLAAVDMATKIY-KAKVIGVCNSED--K-TDLIRQKGAWAALTFTNEKSLV-----------------  221 (296)
Q Consensus       163 ~~vlI~Ga~g~vG~aa~~la~~~~-g~~Vi~~~~~~~--~-~~~~~~~g~~~~~~~~~~~~~~-----------------  221 (296)
                      ++|.|+|++|.+|..++.++++.. .++|+++.....  + .+.++++.+..+...++ ....                 
T Consensus         2 k~i~IlGsTGSIG~qtL~Vi~~~~~~f~v~~Laa~~n~~~L~~q~~~f~p~~v~i~d~-~~~~~l~~~l~~~~~~~~v~~   80 (389)
T TIGR00243         2 KQIVILGSTGSIGKSTLDVVRHNPDHFQVVALSAGKNVALMVEQILEFRPKFVAIDDE-ASLKDLKTMLQQQGSRTEVLV   80 (389)
T ss_pred             ceEEEEecChHHHHHHHHHHHhCccccEEEEEEcCCCHHHHHHHHHHcCCCEEEEcCH-HHHHHHHHHhhcCCCCcEEEE
Confidence            478999999999999999985432 468888775432  2 23445677766554432 1111                 


Q ss_pred             --HHHHHHhCCCcccEEEECCCC-ccHHHHHHHhhccCc
Q psy1959         222 --NKVLEVSGGKYANVVFEAVGG-EDKTDLIRQKGAWAA  257 (296)
Q Consensus       222 --~~i~~~~~~~g~d~vld~~g~-~~~~~~~~~lg~~~g  257 (296)
                        +.+.++.....+|+++.++-+ ..+.-.+..+ +.+-
T Consensus        81 G~~~l~~l~~~~~~D~vv~AivG~aGL~pt~~Ai-~~gk  118 (389)
T TIGR00243        81 GEEGICEMAALEDVDQVMNAIVGAAGLLPTLAAI-RAGK  118 (389)
T ss_pred             CHHHHHHHHcCCCCCEEEEhhhcHhhHHHHHHHH-HCCC
Confidence              122233333468999998877 7788777777 4443

1-deoxy-D-xylulose 5-phosphate is converted to 2-C-methyl-D-erythritol 4-phosphate in the presence of NADPH. It is involved in the synthesis of isopentenyl diphosphate (IPP), a basic building block in isoprenoid, thiamin, and pyridoxal biosynthesis.

>PRK07502 cyclohexadienyl dehydrogenase; Validated

Probab=91.70  E-value=1.1  Score=40.52  Aligned_cols=44  Identities=16%  Similarity=0.243  Sum_probs=35.9

Q ss_pred             cEEEEEcCCCcHHHHHHHHHHHhCCC--EEEEEeCCcchHHHHHhcCC
Q psy1959         163 QTVLVTAAGGGLGLAAVDMATKIYKA--KVIGVCNSEDKTDLIRQKGA  208 (296)
Q Consensus       163 ~~vlI~Ga~g~vG~aa~~la~~~~g~--~Vi~~~~~~~~~~~~~~~g~  208 (296)
                      .+|.|+|. |.+|.+.+..+ +..|.  +|++.++++++.+.+++.|.
T Consensus         7 ~~I~IIG~-G~mG~sla~~l-~~~g~~~~V~~~dr~~~~~~~a~~~g~   52 (307)
T PRK07502          7 DRVALIGI-GLIGSSLARAI-RRLGLAGEIVGADRSAETRARARELGL   52 (307)
T ss_pred             cEEEEEee-CHHHHHHHHHH-HhcCCCcEEEEEECCHHHHHHHHhCCC
Confidence            57999996 99999888877 34564  89999999888888887775

>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=91.70  E-value=0.76  Score=46.04  Aligned_cols=76  Identities=18%  Similarity=0.230  Sum_probs=53.3

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcc---------------------hHHHHHhcCCcEEEEcCCchh
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSED---------------------KTDLIRQKGAWAALTFTNEKS  219 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~---------------------~~~~~~~~g~~~~~~~~~~~~  219 (296)
                      .+++|+|+|+ |+.|+.++..+ +..|.+|++.++.+.                     +.++++++|++..++.....+
T Consensus       309 ~~kkVaIIG~-GpaGl~aA~~L-~~~G~~Vtv~e~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~Gv~~~~~~~v~~~  386 (639)
T PRK12809        309 RSEKVAVIGA-GPAGLGCADIL-ARAGVQVDVFDRHPEIGGMLTFGIPPFKLDKTVLSQRREIFTAMGIDFHLNCEIGRD  386 (639)
T ss_pred             CCCEEEEECc-CHHHHHHHHHH-HHcCCcEEEEeCCCCCCCeeeccCCcccCCHHHHHHHHHHHHHCCeEEEcCCccCCc
Confidence            4899999997 99999999988 457999999987653                     456677788766554421011


Q ss_pred             HHHHHHHHhCCCcccEEEECCCC
Q psy1959         220 LVNKVLEVSGGKYANVVFEAVGG  242 (296)
Q Consensus       220 ~~~~i~~~~~~~g~d~vld~~g~  242 (296)
                      .  .+.++.  .++|.+|.++|.
T Consensus       387 ~--~~~~l~--~~~DaV~latGa  405 (639)
T PRK12809        387 I--TFSDLT--SEYDAVFIGVGT  405 (639)
T ss_pred             C--CHHHHH--hcCCEEEEeCCC
Confidence            0  112222  368999999996

>PF02719 Polysacc_synt_2: Polysaccharide biosynthesis protein; InterPro: IPR003869 This domain is found in diverse bacterial polysaccharide biosynthesis proteins including the CapD protein from Staphylococcus aureus [], the WalL protein, mannosyl-transferase [], and several putative epimerases

Probab=91.60  E-value=1.2  Score=40.03  Aligned_cols=77  Identities=21%  Similarity=0.169  Sum_probs=43.8

Q ss_pred             EEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHh-c----C---CcEE--EEcCCchhHHHHHHHHhCCCccc
Q psy1959         165 VLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQ-K----G---AWAA--LTFTNEKSLVNKVLEVSGGKYAN  234 (296)
Q Consensus       165 vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~-~----g---~~~~--~~~~~~~~~~~~i~~~~~~~g~d  234 (296)
                      |||+|++|.+|...++-..+....+++++++++.++-.++. +    .   ....  ...-+ -.-.+.+.++....++|
T Consensus         1 VLVTGa~GSIGseL~rql~~~~p~~lil~d~~E~~l~~l~~~l~~~~~~~~v~~~~~~vigD-vrd~~~l~~~~~~~~pd   79 (293)
T PF02719_consen    1 VLVTGAGGSIGSELVRQLLRYGPKKLILFDRDENKLYELERELRSRFPDPKVRFEIVPVIGD-VRDKERLNRIFEEYKPD   79 (293)
T ss_dssp             EEEETTTSHHHHHHHHHHHCCB-SEEEEEES-HHHHHHHHHHCHHHC--TTCEEEEE--CTS-CCHHHHHHHHTT--T-S
T ss_pred             CEEEccccHHHHHHHHHHHhcCCCeEEEeCCChhHHHHHHHHHhhcccccCcccccCceeec-ccCHHHHHHHHhhcCCC
Confidence            79999999999886666524334589999999998776653 3    1   1111  11222 22344566666556899


Q ss_pred             EEEECCCC
Q psy1959         235 VVFEAVGG  242 (296)
Q Consensus       235 ~vld~~g~  242 (296)
                      +||.+..-
T Consensus        80 iVfHaAA~   87 (293)
T PF02719_consen   80 IVFHAAAL   87 (293)
T ss_dssp             EEEE----
T ss_pred             EEEEChhc
Confidence            99998874

The CapD protein is required for biosynthesis of type 1 capsular polysaccharide.; GO: 0009058 biosynthetic process; PDB: 3PVZ_C 2GN8_B 2GN4_A 2GNA_B 2GN6_A 2GN9_A.

>TIGR02197 heptose_epim ADP-L-glycero-D-manno-heptose-6-epimerase

Probab=91.58  E-value=0.71  Score=41.28  Aligned_cols=73  Identities=12%  Similarity=0.130  Sum_probs=42.6

Q ss_pred             EEEEcCCCcHHHHHHHHHHHhCCC-EEEEEeCCcchHHHHHhcCCcEEE-EcCCchhHHHHHHHHhCCCcccEEEECCC
Q psy1959         165 VLVTAAGGGLGLAAVDMATKIYKA-KVIGVCNSEDKTDLIRQKGAWAAL-TFTNEKSLVNKVLEVSGGKYANVVFEAVG  241 (296)
Q Consensus       165 vlI~Ga~g~vG~aa~~la~~~~g~-~Vi~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~i~~~~~~~g~d~vld~~g  241 (296)
                      |||+|++|.+|..+++.+ ...|. .|+++++...... +.+++..... +..+ .+..+.+.+. .-.++|+|+.+.+
T Consensus         1 ilItGatG~iG~~l~~~L-~~~g~~~v~~~~~~~~~~~-~~~~~~~~~~~d~~~-~~~~~~~~~~-~~~~~D~vvh~A~   75 (314)
T TIGR02197         1 IIVTGGAGFIGSNLVKAL-NERGITDILVVDNLRDGHK-FLNLADLVIADYIDK-EDFLDRLEKG-AFGKIEAIFHQGA   75 (314)
T ss_pred             CEEeCCcchhhHHHHHHH-HHcCCceEEEEecCCCchh-hhhhhheeeeccCcc-hhHHHHHHhh-ccCCCCEEEECcc
Confidence            689999999999999888 45687 7888775443322 2222221111 1222 2233333221 1147999999886

This family consists of examples of ADP-L-glycero-D-mannoheptose-6-epimerase, an enzyme involved in biosynthesis of the inner core of lipopolysaccharide (LPS) for Gram-negative bacteria. This enzyme is homologous to UDP-glucose 4-epimerase (TIGR01179) and belongs to the NAD dependent epimerase/dehydratase family (pfam01370).

>TIGR01777 yfcH conserved hypothetical protein TIGR01777

Probab=91.52  E-value=0.21  Score=44.08  Aligned_cols=67  Identities=18%  Similarity=0.123  Sum_probs=43.9

Q ss_pred             EEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCcEEEEcCCchhHHHHHHHHhCCCcccEEEECCCC
Q psy1959         165 VLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNKVLEVSGGKYANVVFEAVGG  242 (296)
Q Consensus       165 vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~g~d~vld~~g~  242 (296)
                      |+|+|++|-+|..+++.+ ...|.+|++++++.++.+.+...+   ...... .    ...+..  .++|+|+.+.+.
T Consensus         1 vlVtGatG~iG~~l~~~L-~~~g~~V~~~~r~~~~~~~~~~~~---~~~~~~-~----~~~~~~--~~~D~Vvh~a~~   67 (292)
T TIGR01777         1 ILITGGTGFIGRALTQRL-TKDGHEVTILTRSPPAGANTKWEG---YKPWAP-L----AESEAL--EGADAVINLAGE   67 (292)
T ss_pred             CEEEcccchhhHHHHHHH-HHcCCEEEEEeCCCCCCCccccee---eecccc-c----chhhhc--CCCCEEEECCCC
Confidence            589999999999999877 446999999999877654322111   111111 1    111222  379999999974

This model represents a clade of proteins of unknown function including the E. coli yfcH protein.

>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed

Probab=91.48  E-value=0.91  Score=40.47  Aligned_cols=73  Identities=16%  Similarity=0.174  Sum_probs=48.3

Q ss_pred             CCCcEEEEEcCCCcHHHHHHHHHHHhCC-CEEEEEeCCcchHHHHHh-cCCcEEEEcCCchhHHHHHHHHhCCCcccEEE
Q psy1959         160 KEKQTVLVTAAGGGLGLAAVDMATKIYK-AKVIGVCNSEDKTDLIRQ-KGAWAALTFTNEKSLVNKVLEVSGGKYANVVF  237 (296)
Q Consensus       160 ~~g~~vlI~Ga~g~vG~aa~~la~~~~g-~~Vi~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~~~g~d~vl  237 (296)
                      ..+++++|+|+ |++|.+++..+ ...| .+|+++.++.++.+.+.+ +.....+.. . .+.    .+.  -..+|+++
T Consensus       121 ~~~k~vlVlGa-Gg~a~ai~~aL-~~~g~~~V~v~~R~~~~a~~l~~~~~~~~~~~~-~-~~~----~~~--~~~~DivI  190 (278)
T PRK00258        121 LKGKRILILGA-GGAARAVILPL-LDLGVAEITIVNRTVERAEELAKLFGALGKAEL-D-LEL----QEE--LADFDLII  190 (278)
T ss_pred             CCCCEEEEEcC-cHHHHHHHHHH-HHcCCCEEEEEeCCHHHHHHHHHHhhhccceee-c-ccc----hhc--cccCCEEE
Confidence            35788999997 99999999888 4578 699999999888776654 321110111 1 000    111  13689999


Q ss_pred             ECCCC
Q psy1959         238 EAVGG  242 (296)
Q Consensus       238 d~~g~  242 (296)
                      +|+..
T Consensus       191 naTp~  195 (278)
T PRK00258        191 NATSA  195 (278)
T ss_pred             ECCcC
Confidence            98864

>PRK12549 shikimate 5-dehydrogenase; Reviewed

Probab=91.44  E-value=0.94  Score=40.58  Aligned_cols=42  Identities=14%  Similarity=0.141  Sum_probs=35.1

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCC-EEEEEeCCcchHHHHH
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKA-KVIGVCNSEDKTDLIR  204 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~-~Vi~~~~~~~~~~~~~  204 (296)
                      .+++++|.|+ |+.|.+++..+ ...|+ +|++++++.+|.+.+.
T Consensus       126 ~~k~vlIlGa-GGaaraia~aL-~~~G~~~I~I~nR~~~ka~~la  168 (284)
T PRK12549        126 SLERVVQLGA-GGAGAAVAHAL-LTLGVERLTIFDVDPARAAALA  168 (284)
T ss_pred             cCCEEEEECC-cHHHHHHHHHH-HHcCCCEEEEECCCHHHHHHHH
Confidence            5689999997 99999988888 45787 8999999988877664

>COG0702 Predicted nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]

Probab=91.39  E-value=0.53  Score=41.05  Aligned_cols=70  Identities=21%  Similarity=0.201  Sum_probs=48.5

Q ss_pred             EEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCcEEE-EcCCchhHHHHHHHHhCCCcccEEEECCC
Q psy1959         164 TVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAAL-TFTNEKSLVNKVLEVSGGKYANVVFEAVG  241 (296)
Q Consensus       164 ~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~i~~~~~~~g~d~vld~~g  241 (296)
                      +|+|+|++|.+|..+++.+ ...|.+|.++.++.++..... .+..... ++.+..    .+...  .+|+|.++-+.+
T Consensus         2 ~ilV~GatG~~G~~~~~~L-~~~~~~v~~~~r~~~~~~~~~-~~v~~~~~d~~~~~----~l~~a--~~G~~~~~~i~~   72 (275)
T COG0702           2 KILVTGATGFVGGAVVREL-LARGHEVRAAVRNPEAAAALA-GGVEVVLGDLRDPK----SLVAG--AKGVDGVLLISG   72 (275)
T ss_pred             eEEEEecccchHHHHHHHH-HhCCCEEEEEEeCHHHHHhhc-CCcEEEEeccCCHh----HHHHH--hccccEEEEEec
Confidence            6899999999999999998 456999999999999888877 5554433 233312    22222  236666666555

>COG0031 CysK Cysteine synthase [Amino acid transport and metabolism]

Probab=91.32  E-value=2.3  Score=38.32  Aligned_cols=59  Identities=29%  Similarity=0.321  Sum_probs=47.2

Q ss_pred             HHcCCCCCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeC---CcchHHHHHhcCCcEEEEcC
Q psy1959         155 RHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCN---SEDKTDLIRQKGAWAALTFT  215 (296)
Q Consensus       155 ~~~~~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~---~~~~~~~~~~~g~~~~~~~~  215 (296)
                      +...+++|. .+|-+.+|.+|.+.+.+| +.+|++++.+..   +.+|.+.++.+|+..++...
T Consensus        55 ~~G~l~pG~-tIVE~TSGNTGI~LA~va-a~~Gy~~iivmP~~~S~er~~~l~a~GAevi~t~~  116 (300)
T COG0031          55 KRGLLKPGG-TIVEATSGNTGIALAMVA-AAKGYRLIIVMPETMSQERRKLLRALGAEVILTPG  116 (300)
T ss_pred             HcCCCCCCC-EEEEcCCChHHHHHHHHH-HHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEcCC
Confidence            567799998 556788899999999999 678998777754   77788999999987665543

>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]

Probab=91.30  E-value=1.6  Score=37.72  Aligned_cols=84  Identities=13%  Similarity=0.137  Sum_probs=56.7

Q ss_pred             EEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHh-cCCcEEEEcCCchhHHHHHHHHhCCCcccEEEECCCC
Q psy1959         164 TVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQ-KGAWAALTFTNEKSLVNKVLEVSGGKYANVVFEAVGG  242 (296)
Q Consensus       164 ~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~~~g~d~vld~~g~  242 (296)
                      .++|.|+ |-+|+..++.+ ...|..|+++++++++...... .-...++..+.  .-.+.++++ +-..+|+++-+.|+
T Consensus         2 ~iiIiG~-G~vG~~va~~L-~~~g~~Vv~Id~d~~~~~~~~~~~~~~~~v~gd~--t~~~~L~~a-gi~~aD~vva~t~~   76 (225)
T COG0569           2 KIIIIGA-GRVGRSVAREL-SEEGHNVVLIDRDEERVEEFLADELDTHVVIGDA--TDEDVLEEA-GIDDADAVVAATGN   76 (225)
T ss_pred             EEEEECC-cHHHHHHHHHH-HhCCCceEEEEcCHHHHHHHhhhhcceEEEEecC--CCHHHHHhc-CCCcCCEEEEeeCC
Confidence            5789998 99999999988 5679999999999999877333 22233343322  112334443 45689999999998


Q ss_pred             ccHHHHHHHh
Q psy1959         243 EDKTDLIRQK  252 (296)
Q Consensus       243 ~~~~~~~~~l  252 (296)
                      ...+..+-++
T Consensus        77 d~~N~i~~~l   86 (225)
T COG0569          77 DEVNSVLALL   86 (225)
T ss_pred             CHHHHHHHHH
Confidence            5444443333

>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]

Probab=91.29  E-value=1.1  Score=43.50  Aligned_cols=79  Identities=24%  Similarity=0.323  Sum_probs=51.5

Q ss_pred             CCcEEEEEcCCCcHHHH-HHHHHHHhCCCEEEEEeCCcchHHHHHh-c----CCcE-EEEcCCchhHHHHHHHHhCCCcc
Q psy1959         161 EKQTVLVTAAGGGLGLA-AVDMATKIYKAKVIGVCNSEDKTDLIRQ-K----GAWA-ALTFTNEKSLVNKVLEVSGGKYA  233 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~a-a~~la~~~~g~~Vi~~~~~~~~~~~~~~-~----g~~~-~~~~~~~~~~~~~i~~~~~~~g~  233 (296)
                      .|++|+|+|++|.+|.. +-|++ +....+++..+++|.++..+.. +    +... ....-+..+ .+.+.++..+.++
T Consensus       249 ~gK~vLVTGagGSiGsel~~qil-~~~p~~i~l~~~~E~~~~~i~~el~~~~~~~~~~~~igdVrD-~~~~~~~~~~~kv  326 (588)
T COG1086         249 TGKTVLVTGGGGSIGSELCRQIL-KFNPKEIILFSRDEYKLYLIDMELREKFPELKLRFYIGDVRD-RDRVERAMEGHKV  326 (588)
T ss_pred             CCCEEEEeCCCCcHHHHHHHHHH-hcCCCEEEEecCchHHHHHHHHHHHhhCCCcceEEEeccccc-HHHHHHHHhcCCC
Confidence            59999999999999976 55666 5445589999988887765532 2    2122 121222122 2345555556689


Q ss_pred             cEEEECCC
Q psy1959         234 NVVFEAVG  241 (296)
Q Consensus       234 d~vld~~g  241 (296)
                      |+||.+..
T Consensus       327 d~VfHAAA  334 (588)
T COG1086         327 DIVFHAAA  334 (588)
T ss_pred             ceEEEhhh
Confidence            99999875

>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]

Probab=91.28  E-value=2  Score=38.43  Aligned_cols=101  Identities=18%  Similarity=0.169  Sum_probs=66.8

Q ss_pred             HHHHHHHHcCCCCCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHh----cCCcE-E-EEcCCchhHHH
Q psy1959         149 AQIVFSRHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQ----KGAWA-A-LTFTNEKSLVN  222 (296)
Q Consensus       149 a~~~l~~~~~~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~----~g~~~-~-~~~~~~~~~~~  222 (296)
                      ++..+.+..++++|+++|=+|+ | =|.+++..| +.++.+|+.++.|++..+.+++    .|... + +...+-.++  
T Consensus        60 k~~~~~~kl~L~~G~~lLDiGC-G-WG~l~~~aA-~~y~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~--  134 (283)
T COG2230          60 KLDLILEKLGLKPGMTLLDIGC-G-WGGLAIYAA-EEYGVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDF--  134 (283)
T ss_pred             HHHHHHHhcCCCCCCEEEEeCC-C-hhHHHHHHH-HHcCCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEecccccc--
Confidence            4455558899999999999996 4 488888889 5579999999999998877765    35441 1 111110111  


Q ss_pred             HHHHHhCCCcccEEEE-----CCCCc----cHHHHHHHhhccCceEEee
Q psy1959         223 KVLEVSGGKYANVVFE-----AVGGE----DKTDLIRQKGAWAALTFTN  262 (296)
Q Consensus       223 ~i~~~~~~~g~d~vld-----~~g~~----~~~~~~~~lg~~~g~~~~~  262 (296)
                           .  ..+|-++.     .+|.+    .+..+.+.| +++|.+.+.
T Consensus       135 -----~--e~fDrIvSvgmfEhvg~~~~~~ff~~~~~~L-~~~G~~llh  175 (283)
T COG2230         135 -----E--EPFDRIVSVGMFEHVGKENYDDFFKKVYALL-KPGGRMLLH  175 (283)
T ss_pred             -----c--cccceeeehhhHHHhCcccHHHHHHHHHhhc-CCCceEEEE
Confidence                 1  12665544     45542    466777778 888877543

>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase

Probab=91.24  E-value=3.8  Score=34.82  Aligned_cols=101  Identities=15%  Similarity=0.091  Sum_probs=64.1

Q ss_pred             HHcCCCCCcEEEEEcCCCcHHHHHHHHHHHhCC--CEEEEEeCCcchHHHHHh----cCCcEE-EEcCCchhHHHHHHHH
Q psy1959         155 RHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYK--AKVIGVCNSEDKTDLIRQ----KGAWAA-LTFTNEKSLVNKVLEV  227 (296)
Q Consensus       155 ~~~~~~~g~~vlI~Ga~g~vG~aa~~la~~~~g--~~Vi~~~~~~~~~~~~~~----~g~~~~-~~~~~~~~~~~~i~~~  227 (296)
                      +...++++++||=.|+  |.|..+..+++ ..+  .+|+.++.+++-.+.+++    .+.+.+ +...+   ..+..   
T Consensus        71 ~~l~~~~~~~VLDiG~--GsG~~a~~la~-~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d---~~~~~---  141 (215)
T TIGR00080        71 ELLELKPGMKVLEIGT--GSGYQAAVLAE-IVGRDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGD---GTQGW---  141 (215)
T ss_pred             HHhCCCCcCEEEEECC--CccHHHHHHHH-HhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECC---cccCC---
Confidence            5567889999999884  55777778884 333  469999998887766653    344322 11111   11111   


Q ss_pred             hCCCcccEEEECCCC-ccHHHHHHHhhccCceEEeeccc
Q psy1959         228 SGGKYANVVFEAVGG-EDKTDLIRQKGAWAALTFTNEKS  265 (296)
Q Consensus       228 ~~~~g~d~vld~~g~-~~~~~~~~~lg~~~g~~~~~~~~  265 (296)
                      .....+|+++-.... .......+.| +.+|.+.++...
T Consensus       142 ~~~~~fD~Ii~~~~~~~~~~~~~~~L-~~gG~lv~~~~~  179 (215)
T TIGR00080       142 EPLAPYDRIYVTAAGPKIPEALIDQL-KEGGILVMPVGE  179 (215)
T ss_pred             cccCCCCEEEEcCCcccccHHHHHhc-CcCcEEEEEEcC
Confidence            112479988765544 4566777888 999998776554

Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.

>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]

Probab=91.23  E-value=1.9  Score=37.59  Aligned_cols=33  Identities=21%  Similarity=0.230  Sum_probs=26.3

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCC-EEEEEeC
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKA-KVIGVCN  195 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~-~Vi~~~~  195 (296)
                      +.++|+|.|. |++|.+++..+. ..|. ++..+|-
T Consensus        29 ~~~~V~VvGi-GGVGSw~veALa-RsGig~itlID~   62 (263)
T COG1179          29 KQAHVCVVGI-GGVGSWAVEALA-RSGIGRITLIDM   62 (263)
T ss_pred             hhCcEEEEec-CchhHHHHHHHH-HcCCCeEEEEec
Confidence            4578999998 999999999884 4677 7777764

>PRK09987 dTDP-4-dehydrorhamnose reductase; Provisional

Probab=91.20  E-value=0.56  Score=42.10  Aligned_cols=63  Identities=16%  Similarity=0.162  Sum_probs=40.3

Q ss_pred             EEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCcEEEEcCCchhHHHHHHHHhCCCcccEEEECCCC
Q psy1959         164 TVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNKVLEVSGGKYANVVFEAVGG  242 (296)
Q Consensus       164 ~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~g~d~vld~~g~  242 (296)
                      +|||+|++|-+|...++.+ ...| +|+++++....          ...+..+ .   +.+.+.....++|+||++.+.
T Consensus         2 ~iLVtG~~GfiGs~l~~~L-~~~g-~V~~~~~~~~~----------~~~Dl~d-~---~~~~~~~~~~~~D~Vih~Aa~   64 (299)
T PRK09987          2 NILLFGKTGQVGWELQRAL-APLG-NLIALDVHSTD----------YCGDFSN-P---EGVAETVRKIRPDVIVNAAAH   64 (299)
T ss_pred             eEEEECCCCHHHHHHHHHh-hccC-CEEEecccccc----------ccCCCCC-H---HHHHHHHHhcCCCEEEECCcc
Confidence            6999999999999998877 4457 78887764220          0112223 1   223333333468999998874

>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional

Probab=91.19  E-value=1.6  Score=40.15  Aligned_cols=35  Identities=23%  Similarity=0.215  Sum_probs=27.4

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCC-EEEEEeCCc
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKA-KVIGVCNSE  197 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~-~Vi~~~~~~  197 (296)
                      .+.+|+|.|+ |++|..++..+ ...|. ++.++|.+.
T Consensus        23 ~~~~VlIiG~-GglGs~va~~L-a~aGvg~i~lvD~D~   58 (338)
T PRK12475         23 REKHVLIVGA-GALGAANAEAL-VRAGIGKLTIADRDY   58 (338)
T ss_pred             cCCcEEEECC-CHHHHHHHHHH-HHcCCCEEEEEcCCc
Confidence            4468999998 99999888877 44687 888888653

>PRK12550 shikimate 5-dehydrogenase; Reviewed

Probab=91.14  E-value=1.1  Score=39.91  Aligned_cols=46  Identities=13%  Similarity=0.133  Sum_probs=36.2

Q ss_pred             CCCCCcEEEEEcCCCcHHHHHHHHHHHhCCC-EEEEEeCCcchHHHHHh
Q psy1959         158 KLKEKQTVLVTAAGGGLGLAAVDMATKIYKA-KVIGVCNSEDKTDLIRQ  205 (296)
Q Consensus       158 ~~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~-~Vi~~~~~~~~~~~~~~  205 (296)
                      +...+++++|.|+ |+.+++++..+ ...|+ +|+++.|+.+|.+.+.+
T Consensus       118 ~~~~~~~vlilGa-GGaarAi~~aL-~~~g~~~i~i~nR~~~~a~~la~  164 (272)
T PRK12550        118 QVPPDLVVALRGS-GGMAKAVAAAL-RDAGFTDGTIVARNEKTGKALAE  164 (272)
T ss_pred             CCCCCCeEEEECC-cHHHHHHHHHH-HHCCCCEEEEEeCCHHHHHHHHH
Confidence            3445678999997 99999988877 44687 79999999888776654

>PLN02730 enoyl-[acyl-carrier-protein] reductase

Probab=91.14  E-value=0.52  Score=42.64  Aligned_cols=38  Identities=11%  Similarity=0.115  Sum_probs=30.5

Q ss_pred             CCcEEEEEcC--CCcHHHHHHHHHHHhCCCEEEEEeCCcchH
Q psy1959         161 EKQTVLVTAA--GGGLGLAAVDMATKIYKAKVIGVCNSEDKT  200 (296)
Q Consensus       161 ~g~~vlI~Ga--~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~  200 (296)
                      .|++++|+|+  +.++|.++++.+ ...|++|++ .+...++
T Consensus         8 ~gk~alITGa~~s~GIG~a~A~~l-a~~Ga~Vv~-~~~~~~l   47 (303)
T PLN02730          8 RGKRAFIAGVADDNGYGWAIAKAL-AAAGAEILV-GTWVPAL   47 (303)
T ss_pred             CCCEEEEeCCCCCCcHHHHHHHHH-HHCCCEEEE-EeCcchh
Confidence            5899999999  799999988888 457999988 4444443

>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]

Probab=90.94  E-value=0.91  Score=40.62  Aligned_cols=45  Identities=18%  Similarity=0.192  Sum_probs=36.9

Q ss_pred             CCCcEEEEEcCCCcHHHHHHHHHHHhCCC-EEEEEeCCcchHHHHHhc
Q psy1959         160 KEKQTVLVTAAGGGLGLAAVDMATKIYKA-KVIGVCNSEDKTDLIRQK  206 (296)
Q Consensus       160 ~~g~~vlI~Ga~g~vG~aa~~la~~~~g~-~Vi~~~~~~~~~~~~~~~  206 (296)
                      .++++++|.|+ ||.+.+++.-+ ...|+ +++++.|+.+|.+.+.+.
T Consensus       124 ~~~~~vlilGA-GGAarAv~~aL-~~~g~~~i~V~NRt~~ra~~La~~  169 (283)
T COG0169         124 VTGKRVLILGA-GGAARAVAFAL-AEAGAKRITVVNRTRERAEELADL  169 (283)
T ss_pred             cCCCEEEEECC-cHHHHHHHHHH-HHcCCCEEEEEeCCHHHHHHHHHH
Confidence            35899999998 88899888877 45685 899999999988777653

>PRK09620 hypothetical protein; Provisional

Probab=90.91  E-value=1.2  Score=38.54  Aligned_cols=82  Identities=20%  Similarity=0.160  Sum_probs=49.2

Q ss_pred             CCcEEEEEcCC----------------CcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCcEEEEcCCchhHHHHH
Q psy1959         161 EKQTVLVTAAG----------------GGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNKV  224 (296)
Q Consensus       161 ~g~~vlI~Ga~----------------g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i  224 (296)
                      .|.+|+|+++.                |-+|...++.+ ...|++|+++++.-.........+... .......+..+.+
T Consensus         2 ~gk~vlITaG~T~E~iD~VR~itN~SSGfiGs~LA~~L-~~~Ga~V~li~g~~~~~~~~~~~~~~~-~~V~s~~d~~~~l   79 (229)
T PRK09620          2 KGKKVLITSGGCLEKWDQVRGHTNMAKGTIGRIIAEEL-ISKGAHVIYLHGYFAEKPNDINNQLEL-HPFEGIIDLQDKM   79 (229)
T ss_pred             CCCEEEEeCCCccCCcCCeeEecCCCcCHHHHHHHHHH-HHCCCeEEEEeCCCcCCCcccCCceeE-EEEecHHHHHHHH
Confidence            46777777654                88999999999 568999998886422111100001111 1111113455666


Q ss_pred             HHHhCCCcccEEEECCCCcc
Q psy1959         225 LEVSGGKYANVVFEAVGGED  244 (296)
Q Consensus       225 ~~~~~~~g~d~vld~~g~~~  244 (296)
                      .+.....++|++|.+..-..
T Consensus        80 ~~~~~~~~~D~VIH~AAvsD   99 (229)
T PRK09620         80 KSIITHEKVDAVIMAAAGSD   99 (229)
T ss_pred             HHHhcccCCCEEEECccccc
Confidence            66665457899999887643

>KOG1252|consensus

Probab=90.89  E-value=1.4  Score=40.04  Aligned_cols=57  Identities=25%  Similarity=0.309  Sum_probs=49.5

Q ss_pred             HHcCCCCCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeC---CcchHHHHHhcCCcEEE
Q psy1959         155 RHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCN---SEDKTDLIRQKGAWAAL  212 (296)
Q Consensus       155 ~~~~~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~---~~~~~~~~~~~g~~~~~  212 (296)
                      ..+.++||.++||-+-+|.+|...+.+| ...|++++++-.   +.||...++.+|+..+.
T Consensus        96 ~~G~i~pg~stliEpTSGNtGigLA~~~-a~~Gyk~i~tmP~~ms~Ek~~~l~a~Gaeii~  155 (362)
T KOG1252|consen   96 KKGLITPGKSTLIEPTSGNTGIGLAYMA-ALRGYKCIITMPEKMSKEKRILLRALGAEIIL  155 (362)
T ss_pred             HcCCccCCceEEEecCCCchHHHHHHHH-HHcCceEEEEechhhhHHHHHHHHHcCCEEEe
Confidence            5677899999999999999999999999 778999988875   67788999999986654

>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=90.87  E-value=0.88  Score=45.72  Aligned_cols=77  Identities=21%  Similarity=0.245  Sum_probs=50.4

Q ss_pred             CCCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcc---------------------hHHHHHhcCCcEEEEcCCch
Q psy1959         160 KEKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSED---------------------KTDLIRQKGAWAALTFTNEK  218 (296)
Q Consensus       160 ~~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~---------------------~~~~~~~~g~~~~~~~~~~~  218 (296)
                      ..+++|+|+|+ |+.|+.++..+ ...|.+|+++++.+.                     ..++++++|++...+..-..
T Consensus       325 ~~~~~VaIIGa-GpAGLsaA~~L-~~~G~~V~V~E~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~Gv~~~~~~~v~~  402 (654)
T PRK12769        325 KSDKRVAIIGA-GPAGLACADVL-ARNGVAVTVYDRHPEIGGLLTFGIPAFKLDKSLLARRREIFSAMGIEFELNCEVGK  402 (654)
T ss_pred             cCCCEEEEECC-CHHHHHHHHHH-HHCCCeEEEEecCCCCCceeeecCCCccCCHHHHHHHHHHHHHCCeEEECCCEeCC
Confidence            35889999997 99999999988 457999999987543                     34556667765433221101


Q ss_pred             hHHHHHHHHhCCCcccEEEECCCC
Q psy1959         219 SLVNKVLEVSGGKYANVVFEAVGG  242 (296)
Q Consensus       219 ~~~~~i~~~~~~~g~d~vld~~g~  242 (296)
                      +.  .+.+..  ..+|.+|.+.|.
T Consensus       403 ~i--~~~~~~--~~~DavilAtGa  422 (654)
T PRK12769        403 DI--SLESLL--EDYDAVFVGVGT  422 (654)
T ss_pred             cC--CHHHHH--hcCCEEEEeCCC
Confidence            10  111111  268999998885

>PLN02572 UDP-sulfoquinovose synthase

Probab=90.86  E-value=1.3  Score=42.21  Aligned_cols=35  Identities=26%  Similarity=0.154  Sum_probs=29.8

Q ss_pred             CCCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeC
Q psy1959         160 KEKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCN  195 (296)
Q Consensus       160 ~~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~  195 (296)
                      .++++|+|+|++|.+|...++.+ ...|.+|+++++
T Consensus        45 ~~~k~VLVTGatGfIGs~Lv~~L-~~~G~~V~~~d~   79 (442)
T PLN02572         45 SKKKKVMVIGGDGYCGWATALHL-SKRGYEVAIVDN   79 (442)
T ss_pred             ccCCEEEEECCCcHHHHHHHHHH-HHCCCeEEEEec
Confidence            35789999999999999988888 457999999874

>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB

Probab=90.71  E-value=2.1  Score=37.40  Aligned_cols=33  Identities=24%  Similarity=0.253  Sum_probs=25.6

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCC-EEEEEeC
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKA-KVIGVCN  195 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~-~Vi~~~~  195 (296)
                      .+.+|+|.|+ |++|..+++.+ ...|. +++++|.
T Consensus        23 ~~~~VlvvG~-GglGs~va~~L-a~~Gvg~i~lvD~   56 (240)
T TIGR02355        23 KASRVLIVGL-GGLGCAASQYL-AAAGVGNLTLLDF   56 (240)
T ss_pred             hCCcEEEECc-CHHHHHHHHHH-HHcCCCEEEEEeC
Confidence            3478999998 99999888888 44677 7777664

This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).

>PRK14967 putative methyltransferase; Provisional

Probab=90.57  E-value=6.6  Score=33.58  Aligned_cols=73  Identities=22%  Similarity=0.109  Sum_probs=47.6

Q ss_pred             HcCCCCCcEEEEEcCCCcHHHHHHHHHHHhCCC-EEEEEeCCcchHHHHHh----cCCcEEEEcCCchhHHHHHHHHhCC
Q psy1959         156 HAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKA-KVIGVCNSEDKTDLIRQ----KGAWAALTFTNEKSLVNKVLEVSGG  230 (296)
Q Consensus       156 ~~~~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~-~Vi~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~~~i~~~~~~  230 (296)
                      ...++++++|+-.|+ |. |..+..++ +. ++ +|+.++.+++..+.+++    .+....+..   .++.+.    ...
T Consensus        31 ~~~~~~~~~vLDlGc-G~-G~~~~~la-~~-~~~~v~~vD~s~~~l~~a~~n~~~~~~~~~~~~---~d~~~~----~~~   99 (223)
T PRK14967         31 AEGLGPGRRVLDLCT-GS-GALAVAAA-AA-GAGSVTAVDISRRAVRSARLNALLAGVDVDVRR---GDWARA----VEF   99 (223)
T ss_pred             hcccCCCCeEEEecC-CH-HHHHHHHH-Hc-CCCeEEEEECCHHHHHHHHHHHHHhCCeeEEEE---Cchhhh----ccC
Confidence            345778899999986 55 88888888 43 55 99999999887776554    343322222   122221    123


Q ss_pred             CcccEEEEC
Q psy1959         231 KYANVVFEA  239 (296)
Q Consensus       231 ~g~d~vld~  239 (296)
                      ..+|+|+.+
T Consensus       100 ~~fD~Vi~n  108 (223)
T PRK14967        100 RPFDVVVSN  108 (223)
T ss_pred             CCeeEEEEC
Confidence            479999986

>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B

Probab=90.54  E-value=1.2  Score=33.38  Aligned_cols=82  Identities=17%  Similarity=0.173  Sum_probs=51.7

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCcEEEEcCCchhHHHHHHHHhCCCcccEEEECC
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNKVLEVSGGKYANVVFEAV  240 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~g~d~vld~~  240 (296)
                      .|.+|+|.|+ |.+|..-++.+ ...|++|+++....   ...+  +.-... .   ..+.    +  .-.++++|+-+.
T Consensus         6 ~~~~vlVvGg-G~va~~k~~~L-l~~gA~v~vis~~~---~~~~--~~i~~~-~---~~~~----~--~l~~~~lV~~at   68 (103)
T PF13241_consen    6 KGKRVLVVGG-GPVAARKARLL-LEAGAKVTVISPEI---EFSE--GLIQLI-R---REFE----E--DLDGADLVFAAT   68 (103)
T ss_dssp             TT-EEEEEEE-SHHHHHHHHHH-CCCTBEEEEEESSE---HHHH--TSCEEE-E---SS-G----G--GCTTESEEEE-S
T ss_pred             CCCEEEEECC-CHHHHHHHHHH-HhCCCEEEEECCch---hhhh--hHHHHH-h---hhHH----H--HHhhheEEEecC
Confidence            5789999998 99999988888 56799999999765   2222  211211 1   1221    1  134799999999


Q ss_pred             CCccHHHHHHHhhccCceE
Q psy1959         241 GGEDKTDLIRQKGAWAALT  259 (296)
Q Consensus       241 g~~~~~~~~~~lg~~~g~~  259 (296)
                      +.+.++..+....+.-+..
T Consensus        69 ~d~~~n~~i~~~a~~~~i~   87 (103)
T PF13241_consen   69 DDPELNEAIYADARARGIL   87 (103)
T ss_dssp             S-HHHHHHHHHHHHHTTSE
T ss_pred             CCHHHHHHHHHHHhhCCEE
Confidence            9977777666663444444

>KOG1611|consensus

Probab=90.53  E-value=1.3  Score=38.11  Aligned_cols=80  Identities=24%  Similarity=0.313  Sum_probs=52.0

Q ss_pred             cEEEEEcCCCcHHHHHHHHHHHhCCCEEEEE-eCCcch-HHHHHhcC---Cc-EE--EEcCCc---hhHHHHHHHHhCCC
Q psy1959         163 QTVLVTAAGGGLGLAAVDMATKIYKAKVIGV-CNSEDK-TDLIRQKG---AW-AA--LTFTNE---KSLVNKVLEVSGGK  231 (296)
Q Consensus       163 ~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~-~~~~~~-~~~~~~~g---~~-~~--~~~~~~---~~~~~~i~~~~~~~  231 (296)
                      .+++|.|+..|+|+-.++-..+..+.+++.. .++.++ ..++....   .. ++  ++.+..   .++.+++.+..+.+
T Consensus         4 ksv~ItGaNRGIGlgLVk~llk~~~i~~iiat~r~~e~a~~~l~~k~~~d~rvHii~Ldvt~deS~~~~~~~V~~iVg~~   83 (249)
T KOG1611|consen    4 KSVFITGANRGIGLGLVKELLKDKGIEVIIATARDPEKAATELALKSKSDSRVHIIQLDVTCDESIDNFVQEVEKIVGSD   83 (249)
T ss_pred             ccEEEeccCcchhHHHHHHHhcCCCcEEEEEecCChHHhhHHHHHhhccCCceEEEEEecccHHHHHHHHHHHHhhcccC
Confidence            4599999999999988877757678866554 444666 33333321   11 12  222222   45556666677788


Q ss_pred             cccEEEECCCC
Q psy1959         232 YANVVFEAVGG  242 (296)
Q Consensus       232 g~d~vld~~g~  242 (296)
                      |.|+.+++.|-
T Consensus        84 GlnlLinNaGi   94 (249)
T KOG1611|consen   84 GLNLLINNAGI   94 (249)
T ss_pred             CceEEEeccce
Confidence            99999999984

>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated

Probab=90.49  E-value=2.1  Score=39.42  Aligned_cols=34  Identities=32%  Similarity=0.346  Sum_probs=27.4

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCC-EEEEEeCC
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKA-KVIGVCNS  196 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~-~Vi~~~~~  196 (296)
                      ...+|+|.|+ |++|..++..+ ...|. ++.++|.+
T Consensus        23 ~~~~VlVvG~-GglGs~va~~L-a~aGvg~i~lvD~D   57 (339)
T PRK07688         23 REKHVLIIGA-GALGTANAEML-VRAGVGKVTIVDRD   57 (339)
T ss_pred             cCCcEEEECC-CHHHHHHHHHH-HHcCCCeEEEEeCC
Confidence            4478999998 99999888877 44688 88888875

>PRK04457 spermidine synthase; Provisional

Probab=90.34  E-value=6.2  Score=34.85  Aligned_cols=97  Identities=12%  Similarity=0.034  Sum_probs=61.9

Q ss_pred             CCCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhc-CC---cEEEEcCCchhHHHHHHHHhCCCcccE
Q psy1959         160 KEKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQK-GA---WAALTFTNEKSLVNKVLEVSGGKYANV  235 (296)
Q Consensus       160 ~~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~-g~---~~~~~~~~~~~~~~~i~~~~~~~g~d~  235 (296)
                      .+.++|+.+|+ | .|..+..+++...+.++++++.+++-.+.+++. +.   +.-+.... .+..+.+.+.  ...+|+
T Consensus        65 ~~~~~vL~IG~-G-~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~-~Da~~~l~~~--~~~yD~  139 (262)
T PRK04457         65 PRPQHILQIGL-G-GGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGERFEVIE-ADGAEYIAVH--RHSTDV  139 (262)
T ss_pred             CCCCEEEEECC-C-HhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEE-CCHHHHHHhC--CCCCCE
Confidence            45678999995 3 477888887554467999999999988888764 21   11121111 2334444432  347897


Q ss_pred             EEE-CCCC----------ccHHHHHHHhhccCceEEee
Q psy1959         236 VFE-AVGG----------EDKTDLIRQKGAWAALTFTN  262 (296)
Q Consensus       236 vld-~~g~----------~~~~~~~~~lg~~~g~~~~~  262 (296)
                      ++- +...          +.+..+.+.| +++|.+.++
T Consensus       140 I~~D~~~~~~~~~~l~t~efl~~~~~~L-~pgGvlvin  176 (262)
T PRK04457        140 ILVDGFDGEGIIDALCTQPFFDDCRNAL-SSDGIFVVN  176 (262)
T ss_pred             EEEeCCCCCCCccccCcHHHHHHHHHhc-CCCcEEEEE
Confidence            774 2211          3467788888 899998765

>COG1090 Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]

Probab=90.32  E-value=0.67  Score=41.07  Aligned_cols=67  Identities=15%  Similarity=0.083  Sum_probs=46.0

Q ss_pred             EEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCcEEEEcCCchhHHHHHHHHhCCCcccEEEECCCCc
Q psy1959         165 VLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNKVLEVSGGKYANVVFEAVGGE  243 (296)
Q Consensus       165 vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~g~d~vld~~g~~  243 (296)
                      |+|.|++|-+|.+.++.. ...|-.|++++|++.+..........          ..+.+.+... .++|+||+-.|-+
T Consensus         1 IliTGgTGlIG~~L~~~L-~~~gh~v~iltR~~~~~~~~~~~~v~----------~~~~~~~~~~-~~~DavINLAG~~   67 (297)
T COG1090           1 ILITGGTGLIGRALTARL-RKGGHQVTILTRRPPKASQNLHPNVT----------LWEGLADALT-LGIDAVINLAGEP   67 (297)
T ss_pred             CeEeccccchhHHHHHHH-HhCCCeEEEEEcCCcchhhhcCcccc----------ccchhhhccc-CCCCEEEECCCCc
Confidence            589999999999999988 45788999999988776643222211          1112222221 2799999988854

>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional

Probab=90.31  E-value=1.8  Score=43.31  Aligned_cols=76  Identities=16%  Similarity=0.215  Sum_probs=56.6

Q ss_pred             CcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCcEEEEcCCchhHHHHHHHHhCCCcccEEEECCC
Q psy1959         162 KQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNKVLEVSGGKYANVVFEAVG  241 (296)
Q Consensus       162 g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~g~d~vld~~g  241 (296)
                      .++++|.|. |.+|+..++.+ ...|.++++++.++++.+.+++.|... +..+.  .-.+.+ +..+-+.+|.++-+.+
T Consensus       400 ~~~vII~G~-Gr~G~~va~~L-~~~g~~vvvID~d~~~v~~~~~~g~~v-~~GDa--t~~~~L-~~agi~~A~~vvv~~~  473 (621)
T PRK03562        400 QPRVIIAGF-GRFGQIVGRLL-LSSGVKMTVLDHDPDHIETLRKFGMKV-FYGDA--TRMDLL-ESAGAAKAEVLINAID  473 (621)
T ss_pred             cCcEEEEec-ChHHHHHHHHH-HhCCCCEEEEECCHHHHHHHHhcCCeE-EEEeC--CCHHHH-HhcCCCcCCEEEEEeC
Confidence            368999997 99999999999 557899999999999999999888643 32221  112233 3334557899999998


Q ss_pred             Cc
Q psy1959         242 GE  243 (296)
Q Consensus       242 ~~  243 (296)
                      ++
T Consensus       474 d~  475 (621)
T PRK03562        474 DP  475 (621)
T ss_pred             CH
Confidence            84

>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=90.28  E-value=2.4  Score=40.33  Aligned_cols=71  Identities=25%  Similarity=0.195  Sum_probs=46.9

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCc-chH----HHHHhcCCcEEEEcCCchhHHHHHHHHhCCCcccE
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSE-DKT----DLIRQKGAWAALTFTNEKSLVNKVLEVSGGKYANV  235 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~-~~~----~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~g~d~  235 (296)
                      .+++++|+|+ |.+|+.++..+ ...|++|++.+... +..    +.+...|.. .+..+. .+   .   .  ..++|+
T Consensus         4 ~~k~v~iiG~-g~~G~~~A~~l-~~~G~~V~~~d~~~~~~~~~~~~~l~~~~~~-~~~~~~-~~---~---~--~~~~d~   71 (450)
T PRK14106          4 KGKKVLVVGA-GVSGLALAKFL-KKLGAKVILTDEKEEDQLKEALEELGELGIE-LVLGEY-PE---E---F--LEGVDL   71 (450)
T ss_pred             CCCEEEEECC-CHHHHHHHHHH-HHCCCEEEEEeCCchHHHHHHHHHHHhcCCE-EEeCCc-ch---h---H--hhcCCE
Confidence            4688999998 77999988888 55899999999864 222    333444543 222221 11   1   1  136899


Q ss_pred             EEECCCCc
Q psy1959         236 VFEAVGGE  243 (296)
Q Consensus       236 vld~~g~~  243 (296)
                      ++.+.|..
T Consensus        72 vv~~~g~~   79 (450)
T PRK14106         72 VVVSPGVP   79 (450)
T ss_pred             EEECCCCC
Confidence            99999863

>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2

Probab=90.25  E-value=3.2  Score=35.87  Aligned_cols=80  Identities=16%  Similarity=0.249  Sum_probs=49.0

Q ss_pred             CCCcEEEEEcCCCcHHHHHHHHHHHhCCC---EEEEEeCC----cch--------HHHHHhcCCcEEEEcCCchhHHHHH
Q psy1959         160 KEKQTVLVTAAGGGLGLAAVDMATKIYKA---KVIGVCNS----EDK--------TDLIRQKGAWAALTFTNEKSLVNKV  224 (296)
Q Consensus       160 ~~g~~vlI~Ga~g~vG~aa~~la~~~~g~---~Vi~~~~~----~~~--------~~~~~~~g~~~~~~~~~~~~~~~~i  224 (296)
                      -++++++|+|+ |+.|.+++..+ ...|+   ++++++++    +++        .+++++++... .   . .++.+.+
T Consensus        23 l~~~rvlvlGA-GgAg~aiA~~L-~~~G~~~~~i~ivdr~gl~~~~r~~~L~~~~~~la~~~~~~~-~---~-~~l~~~l   95 (226)
T cd05311          23 IEEVKIVINGA-GAAGIAIARLL-LAAGAKPENIVVVDSKGVIYEGREDDLNPDKNEIAKETNPEK-T---G-GTLKEAL   95 (226)
T ss_pred             ccCCEEEEECc-hHHHHHHHHHH-HHcCcCcceEEEEeCCCccccccchhhhHHHHHHHHHhccCc-c---c-CCHHHHH
Confidence            36789999998 99999988877 44677   59999987    443        22333332211 0   0 1222222


Q ss_pred             HHHhCCCcccEEEECCCCccH-HHHHHHh
Q psy1959         225 LEVSGGKYANVVFEAVGGEDK-TDLIRQK  252 (296)
Q Consensus       225 ~~~~~~~g~d~vld~~g~~~~-~~~~~~l  252 (296)
                            +++|++|++++.-.+ ...++.+
T Consensus        96 ------~~~dvlIgaT~~G~~~~~~l~~m  118 (226)
T cd05311          96 ------KGADVFIGVSRPGVVKKEMIKKM  118 (226)
T ss_pred             ------hcCCEEEeCCCCCCCCHHHHHhh
Confidence                  248999999974222 3556666

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph

>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates

Probab=90.22  E-value=2.9  Score=34.17  Aligned_cols=97  Identities=18%  Similarity=0.111  Sum_probs=59.0

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcc-hHHHHHhcCCcEEEEcCCchhHHHHHHHHhCCCcccEEEEC
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSED-KTDLIRQKGAWAALTFTNEKSLVNKVLEVSGGKYANVVFEA  239 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~g~d~vld~  239 (296)
                      ++++|.|+|- |..|.+..+-+ +..|.+|++..+..+ ..+.+++-|+..       .+..+.+      +..|+++-.
T Consensus         3 ~~k~IAViGy-GsQG~a~AlNL-rDSG~~V~Vglr~~s~s~~~A~~~Gf~v-------~~~~eAv------~~aDvV~~L   67 (165)
T PF07991_consen    3 KGKTIAVIGY-GSQGHAHALNL-RDSGVNVIVGLREGSASWEKAKADGFEV-------MSVAEAV------KKADVVMLL   67 (165)
T ss_dssp             CTSEEEEES--SHHHHHHHHHH-HHCC-EEEEEE-TTCHHHHHHHHTT-EC-------CEHHHHH------HC-SEEEE-
T ss_pred             CCCEEEEECC-ChHHHHHHHHH-HhCCCCEEEEecCCCcCHHHHHHCCCee-------ccHHHHH------hhCCEEEEe
Confidence            5789999997 99999999999 568999999998877 677888888732       2333332      257899988


Q ss_pred             CCCccH-----HHHHHHhhccCceE-EeecccceeeeeEE
Q psy1959         240 VGGEDK-----TDLIRQKGAWAALT-FTNEKSLVNKVLEV  273 (296)
Q Consensus       240 ~g~~~~-----~~~~~~lg~~~g~~-~~~~~~~~~k~~~i  273 (296)
                      +-++.-     +.....| +.+..+ +.....+.++.+..
T Consensus        68 ~PD~~q~~vy~~~I~p~l-~~G~~L~fahGfni~~~~i~p  106 (165)
T PF07991_consen   68 LPDEVQPEVYEEEIAPNL-KPGATLVFAHGFNIHYGLIKP  106 (165)
T ss_dssp             S-HHHHHHHHHHHHHHHS--TT-EEEESSSHHHHCTTS--
T ss_pred             CChHHHHHHHHHHHHhhC-CCCCEEEeCCcchhhcCcccC
Confidence            876433     3344456 555554 33445555555443

This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.

>PRK14027 quinate/shikimate dehydrogenase; Provisional

Probab=90.16  E-value=1.1  Score=40.14  Aligned_cols=43  Identities=16%  Similarity=0.156  Sum_probs=34.3

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCC-EEEEEeCCcchHHHHHh
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKA-KVIGVCNSEDKTDLIRQ  205 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~-~Vi~~~~~~~~~~~~~~  205 (296)
                      ++++++|+|+ ||.+.+++..+ ...|+ +++++.|+.+|.+.+.+
T Consensus       126 ~~k~vlilGa-GGaarAi~~aL-~~~g~~~i~i~nR~~~ka~~La~  169 (283)
T PRK14027        126 KLDSVVQVGA-GGVGNAVAYAL-VTHGVQKLQVADLDTSRAQALAD  169 (283)
T ss_pred             CCCeEEEECC-cHHHHHHHHHH-HHCCCCEEEEEcCCHHHHHHHHH
Confidence            4789999997 99999877777 34677 89999999888776653

>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP

Probab=90.01  E-value=1.2  Score=34.92  Aligned_cols=32  Identities=25%  Similarity=0.374  Sum_probs=24.2

Q ss_pred             CcEEEEEcCCCcHHHHHHHHHHHhCCC-EEEEEeC
Q psy1959         162 KQTVLVTAAGGGLGLAAVDMATKIYKA-KVIGVCN  195 (296)
Q Consensus       162 g~~vlI~Ga~g~vG~aa~~la~~~~g~-~Vi~~~~  195 (296)
                      ..+|+|.|+ |++|..++..+.+ .|. +++.+|.
T Consensus         2 ~~~v~iiG~-G~vGs~va~~L~~-~Gv~~i~lvD~   34 (135)
T PF00899_consen    2 NKRVLIIGA-GGVGSEVAKNLAR-SGVGKITLVDD   34 (135)
T ss_dssp             T-EEEEEST-SHHHHHHHHHHHH-HTTSEEEEEES
T ss_pred             CCEEEEECc-CHHHHHHHHHHHH-hCCCceeecCC
Confidence            468999998 9999887776634 577 7888874

Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....

>PRK08644 thiamine biosynthesis protein ThiF; Provisional

Probab=90.00  E-value=2.2  Score=36.41  Aligned_cols=34  Identities=24%  Similarity=0.137  Sum_probs=26.7

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCC-EEEEEeCC
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKA-KVIGVCNS  196 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~-~Vi~~~~~  196 (296)
                      ...+|+|.|+ |++|..+++.+ ...|. +++.+|.+
T Consensus        27 ~~~~V~ViG~-GglGs~ia~~L-a~~Gvg~i~lvD~D   61 (212)
T PRK08644         27 KKAKVGIAGA-GGLGSNIAVAL-ARSGVGNLKLVDFD   61 (212)
T ss_pred             hCCCEEEECc-CHHHHHHHHHH-HHcCCCeEEEEeCC
Confidence            4568999997 99998877777 44677 68888865

>PRK14874 aspartate-semialdehyde dehydrogenase; Provisional

Probab=89.86  E-value=2  Score=39.48  Aligned_cols=79  Identities=13%  Similarity=0.138  Sum_probs=45.4

Q ss_pred             cEEEEEcCCCcHHHHHHHHHHHhCC---CEEEEEeCCcchHHHHHhcCCcEEEEcCCchhHHHHHHHHhCCCcccEEEEC
Q psy1959         163 QTVLVTAAGGGLGLAAVDMATKIYK---AKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNKVLEVSGGKYANVVFEA  239 (296)
Q Consensus       163 ~~vlI~Ga~g~vG~aa~~la~~~~g---~~Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~g~d~vld~  239 (296)
                      .+|+|.|++|.+|+..++++. ..+   .++..+.+..+.-+.+.-.+.+..+....  .  .   .+   .++|+||.|
T Consensus         2 ~~V~IvGAtG~vG~~l~~lL~-~~~hp~~~l~~l~s~~~~g~~l~~~g~~i~v~d~~--~--~---~~---~~vDvVf~A   70 (334)
T PRK14874          2 YNVAVVGATGAVGREMLNILE-ERNFPVDKLRLLASARSAGKELSFKGKELKVEDLT--T--F---DF---SGVDIALFS   70 (334)
T ss_pred             CEEEEECCCCHHHHHHHHHHH-hCCCCcceEEEEEccccCCCeeeeCCceeEEeeCC--H--H---HH---cCCCEEEEC
Confidence            479999999999999999994 333   35566655443333232122222221111  1  1   11   279999999


Q ss_pred             CCCccHHHHHHHh
Q psy1959         240 VGGEDKTDLIRQK  252 (296)
Q Consensus       240 ~g~~~~~~~~~~l  252 (296)
                      .|..........+
T Consensus        71 ~g~g~s~~~~~~~   83 (334)
T PRK14874         71 AGGSVSKKYAPKA   83 (334)
T ss_pred             CChHHHHHHHHHH
Confidence            9985444433333

>PLN00203 glutamyl-tRNA reductase

Probab=89.82  E-value=2.9  Score=40.82  Aligned_cols=73  Identities=25%  Similarity=0.315  Sum_probs=49.7

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCC-EEEEEeCCcchHHHHHh-cCCcEEEEcCCchhHHHHHHHHhCCCcccEEEE
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKA-KVIGVCNSEDKTDLIRQ-KGAWAALTFTNEKSLVNKVLEVSGGKYANVVFE  238 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~-~Vi~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~~~g~d~vld  238 (296)
                      .+.+|+|+|+ |.+|.++++.+ ...|+ +|+++.++.++.+.+.+ ++... +....   +. .+.+..  ..+|+||.
T Consensus       265 ~~kkVlVIGA-G~mG~~~a~~L-~~~G~~~V~V~nRs~era~~La~~~~g~~-i~~~~---~~-dl~~al--~~aDVVIs  335 (519)
T PLN00203        265 ASARVLVIGA-GKMGKLLVKHL-VSKGCTKMVVVNRSEERVAALREEFPDVE-IIYKP---LD-EMLACA--AEADVVFT  335 (519)
T ss_pred             CCCEEEEEeC-HHHHHHHHHHH-HhCCCCeEEEEeCCHHHHHHHHHHhCCCc-eEeec---Hh-hHHHHH--hcCCEEEE
Confidence            3689999998 99999999988 45787 79999999888776654 43111 11111   11 122222  36899999


Q ss_pred             CCCC
Q psy1959         239 AVGG  242 (296)
Q Consensus       239 ~~g~  242 (296)
                      |++.
T Consensus       336 AT~s  339 (519)
T PLN00203        336 STSS  339 (519)
T ss_pred             ccCC
Confidence            9987

>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type

Probab=89.75  E-value=0.79  Score=41.00  Aligned_cols=74  Identities=20%  Similarity=0.107  Sum_probs=48.0

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCC-EEEEEeCCcchHHHHHh-cCCcE-EEEcCCchhHHHHHHHHhCCCcccEEE
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKA-KVIGVCNSEDKTDLIRQ-KGAWA-ALTFTNEKSLVNKVLEVSGGKYANVVF  237 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~-~Vi~~~~~~~~~~~~~~-~g~~~-~~~~~~~~~~~~~i~~~~~~~g~d~vl  237 (296)
                      ++++++|+|+ |+.+.+++..+ ...|+ +|+++.|+.+|.+.+.+ ++... .....    ..+.+....  ..+|+++
T Consensus       124 ~~k~vlvlGa-GGaarai~~aL-~~~G~~~i~I~nRt~~ka~~La~~~~~~~~~~~~~----~~~~~~~~~--~~~DiVI  195 (282)
T TIGR01809       124 AGFRGLVIGA-GGTSRAAVYAL-ASLGVTDITVINRNPDKLSRLVDLGVQVGVITRLE----GDSGGLAIE--KAAEVLV  195 (282)
T ss_pred             CCceEEEEcC-cHHHHHHHHHH-HHcCCCeEEEEeCCHHHHHHHHHHhhhcCcceecc----chhhhhhcc--cCCCEEE
Confidence            5789999997 99999988877 45787 89999999888776654 22111 11111    001111211  3689999


Q ss_pred             ECCCC
Q psy1959         238 EAVGG  242 (296)
Q Consensus       238 d~~g~  242 (296)
                      +|+..
T Consensus       196 naTp~  200 (282)
T TIGR01809       196 STVPA  200 (282)
T ss_pred             ECCCC
Confidence            99875

This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.

>PRK11150 rfaD ADP-L-glycero-D-mannoheptose-6-epimerase; Provisional

Probab=89.73  E-value=0.9  Score=40.66  Aligned_cols=31  Identities=23%  Similarity=0.208  Sum_probs=24.2

Q ss_pred             EEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCC
Q psy1959         165 VLVTAAGGGLGLAAVDMATKIYKAKVIGVCNS  196 (296)
Q Consensus       165 vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~  196 (296)
                      |+|+|++|-+|..+++.+ ...|.+++++.++
T Consensus         2 ilVtGa~GfiG~~l~~~L-~~~g~~~v~~~~~   32 (308)
T PRK11150          2 IIVTGGAGFIGSNIVKAL-NDKGITDILVVDN   32 (308)
T ss_pred             EEEecCCcHHHHHHHHHH-HhCCCceEEEecC
Confidence            799999999999999877 3468866655444

>PRK08618 ornithine cyclodeaminase; Validated

Probab=89.69  E-value=5  Score=36.62  Aligned_cols=87  Identities=9%  Similarity=0.078  Sum_probs=54.3

Q ss_pred             CCCcEEEEEcCCCcHHHHHHHHHHHhCCC-EEEEEeCCcchHHHHHh-----cCCcEEEEcCCchhHHHHHHHHhCCCcc
Q psy1959         160 KEKQTVLVTAAGGGLGLAAVDMATKIYKA-KVIGVCNSEDKTDLIRQ-----KGAWAALTFTNEKSLVNKVLEVSGGKYA  233 (296)
Q Consensus       160 ~~g~~vlI~Ga~g~vG~aa~~la~~~~g~-~Vi~~~~~~~~~~~~~~-----~g~~~~~~~~~~~~~~~~i~~~~~~~g~  233 (296)
                      +..++++|+|+ |..|.+.+..+....++ +|.+.++++++.+.+.+     ++.. +..+.   ++.+.+      ...
T Consensus       125 ~~~~~v~iiGa-G~~a~~~~~al~~~~~~~~v~v~~r~~~~a~~~~~~~~~~~~~~-~~~~~---~~~~~~------~~a  193 (325)
T PRK08618        125 EDAKTLCLIGT-GGQAKGQLEAVLAVRDIERVRVYSRTFEKAYAFAQEIQSKFNTE-IYVVN---SADEAI------EEA  193 (325)
T ss_pred             CCCcEEEEECC-cHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhcCCc-EEEeC---CHHHHH------hcC
Confidence            35678999997 99998776554244566 88888888888765543     2332 22222   222222      368


Q ss_pred             cEEEECCCCccHHHHHHHhhccCceE
Q psy1959         234 NVVFEAVGGEDKTDLIRQKGAWAALT  259 (296)
Q Consensus       234 d~vld~~g~~~~~~~~~~lg~~~g~~  259 (296)
                      |+|+.|..+...... +.+ +.+..+
T Consensus       194 DiVi~aT~s~~p~i~-~~l-~~G~hV  217 (325)
T PRK08618        194 DIIVTVTNAKTPVFS-EKL-KKGVHI  217 (325)
T ss_pred             CEEEEccCCCCcchH-Hhc-CCCcEE
Confidence            999999998433333 777 555444

>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed

Probab=89.59  E-value=2.4  Score=40.99  Aligned_cols=69  Identities=14%  Similarity=0.182  Sum_probs=46.5

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHh-cCCcEEEEcCCchhHHHHHHHHhCCCcccEEEEC
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQ-KGAWAALTFTNEKSLVNKVLEVSGGKYANVVFEA  239 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~~~g~d~vld~  239 (296)
                      .+.+++|.|+ |++|.+++..+ ...|++|++.++++++.+.+.+ .+. ..+...   +    +.+   -..+|++++|
T Consensus       331 ~~k~vlIiGa-GgiG~aia~~L-~~~G~~V~i~~R~~~~~~~la~~~~~-~~~~~~---~----~~~---l~~~DiVIna  397 (477)
T PRK09310        331 NNQHVAIVGA-GGAAKAIATTL-ARAGAELLIFNRTKAHAEALASRCQG-KAFPLE---S----LPE---LHRIDIIINC  397 (477)
T ss_pred             CCCEEEEEcC-cHHHHHHHHHH-HHCCCEEEEEeCCHHHHHHHHHHhcc-ceechh---H----hcc---cCCCCEEEEc
Confidence            5789999996 99999988888 4578999999988877766543 221 111111   1    111   1368899998


Q ss_pred             CCC
Q psy1959         240 VGG  242 (296)
Q Consensus       240 ~g~  242 (296)
                      +..
T Consensus       398 tP~  400 (477)
T PRK09310        398 LPP  400 (477)
T ss_pred             CCC
Confidence            765

>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]

Probab=89.58  E-value=2.8  Score=39.57  Aligned_cols=82  Identities=20%  Similarity=0.206  Sum_probs=53.5

Q ss_pred             HHHHHHHcCCCCCcEEEEEcCCCcHHHHHHHHHHHhCCC-EEEEEeCCcchHHHH-HhcCCcEEEEcCCchhHHHHHHHH
Q psy1959         150 QIVFSRHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKA-KVIGVCNSEDKTDLI-RQKGAWAALTFTNEKSLVNKVLEV  227 (296)
Q Consensus       150 ~~~l~~~~~~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~-~Vi~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~i~~~  227 (296)
                      .....+..+--.+.+++|+|+ |-+|..++... ...|. +|+++.|+.+|...+ +++|+. ....+       .+...
T Consensus       166 v~lA~~~~~~L~~~~vlvIGA-Gem~~lva~~L-~~~g~~~i~IaNRT~erA~~La~~~~~~-~~~l~-------el~~~  235 (414)
T COG0373         166 VELAKRIFGSLKDKKVLVIGA-GEMGELVAKHL-AEKGVKKITIANRTLERAEELAKKLGAE-AVALE-------ELLEA  235 (414)
T ss_pred             HHHHHHHhcccccCeEEEEcc-cHHHHHHHHHH-HhCCCCEEEEEcCCHHHHHHHHHHhCCe-eecHH-------HHHHh
Confidence            333334434237889999998 88888877777 44674 888899888887644 567742 22221       22222


Q ss_pred             hCCCcccEEEECCCCc
Q psy1959         228 SGGKYANVVFEAVGGE  243 (296)
Q Consensus       228 ~~~~g~d~vld~~g~~  243 (296)
                      .  ..+|+||.+++.+
T Consensus       236 l--~~~DvVissTsa~  249 (414)
T COG0373         236 L--AEADVVISSTSAP  249 (414)
T ss_pred             h--hhCCEEEEecCCC
Confidence            2  2589999999974

>PLN03013 cysteine synthase

Probab=89.53  E-value=3.2  Score=39.46  Aligned_cols=58  Identities=22%  Similarity=0.255  Sum_probs=46.0

Q ss_pred             HHcCCCCCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeC---CcchHHHHHhcCCcEEEE
Q psy1959         155 RHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCN---SEDKTDLIRQKGAWAALT  213 (296)
Q Consensus       155 ~~~~~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~---~~~~~~~~~~~g~~~~~~  213 (296)
                      +...+++|+..+|...+|..|++.+..| +.+|.+++++..   +++|.+.++.+|+..++.
T Consensus       167 ~~G~l~pG~~~VVeaSSGN~G~ALA~~a-~~~G~~~~VvvP~~~s~~K~~~ira~GAeVi~v  227 (429)
T PLN03013        167 QKGFISPGKSVLVEPTSGNTGIGLAFIA-ASRGYRLILTMPASMSMERRVLLKAFGAELVLT  227 (429)
T ss_pred             HcCCcCCCCcEEEEECCcHHHHHHHHHH-HHcCCCEEEEECCCCcHHHHHHHHHcCCEEEEE
Confidence            5566788877778888899999999999 678998777754   566888888889876543

>PRK10669 putative cation:proton antiport protein; Provisional

Probab=89.45  E-value=2  Score=42.28  Aligned_cols=75  Identities=13%  Similarity=0.094  Sum_probs=54.5

Q ss_pred             cEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCcEEEEcCCchhHHHHHHHHhCCCcccEEEECCCC
Q psy1959         163 QTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNKVLEVSGGKYANVVFEAVGG  242 (296)
Q Consensus       163 ~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~g~d~vld~~g~  242 (296)
                      ++++|.|. |.+|+..++.. +..|.++++++.++++.+.+++.|...+. .+.  .-.+.+++ .+-+.+|.++-+.++
T Consensus       418 ~hiiI~G~-G~~G~~la~~L-~~~g~~vvvId~d~~~~~~~~~~g~~~i~-GD~--~~~~~L~~-a~i~~a~~viv~~~~  491 (558)
T PRK10669        418 NHALLVGY-GRVGSLLGEKL-LAAGIPLVVIETSRTRVDELRERGIRAVL-GNA--ANEEIMQL-AHLDCARWLLLTIPN  491 (558)
T ss_pred             CCEEEECC-ChHHHHHHHHH-HHCCCCEEEEECCHHHHHHHHHCCCeEEE-cCC--CCHHHHHh-cCccccCEEEEEcCC
Confidence            67899997 99999999998 55789999999999999999988764433 221  11223333 334578888887776


Q ss_pred             c
Q psy1959         243 E  243 (296)
Q Consensus       243 ~  243 (296)
                      +
T Consensus       492 ~  492 (558)
T PRK10669        492 G  492 (558)
T ss_pred             h
Confidence            3

>PF13561 adh_short_C2: Enoyl-(Acyl carrier protein) reductase; PDB: 2UV8_B 3HMJ_A 2VKZ_C 1O5I_A 2P91_C 2OP0_A 2OL4_B 1NHW_A 1NNU_B 2O2Y_B

Probab=89.34  E-value=1  Score=38.71  Aligned_cols=70  Identities=20%  Similarity=0.204  Sum_probs=44.7

Q ss_pred             CCcHHHHHHHHHHHhCCCEEEEEeCCcch----HHHHH-hcCCcEEEE--cCCchhHHHHHHHHhCC--CcccEEEECCC
Q psy1959         171 GGGLGLAAVDMATKIYKAKVIGVCNSEDK----TDLIR-QKGAWAALT--FTNEKSLVNKVLEVSGG--KYANVVFEAVG  241 (296)
Q Consensus       171 ~g~vG~aa~~la~~~~g~~Vi~~~~~~~~----~~~~~-~~g~~~~~~--~~~~~~~~~~i~~~~~~--~g~d~vld~~g  241 (296)
                      ++++|.++++-+ ...|++|++++++.++    .+.+. +.+.. ++.  ..+..+....+.+....  ..+|+++++.|
T Consensus         5 s~GiG~aia~~l-~~~Ga~V~~~~~~~~~~~~~~~~l~~~~~~~-~~~~D~~~~~~v~~~~~~~~~~~~g~iD~lV~~a~   82 (241)
T PF13561_consen    5 SSGIGRAIARAL-AEEGANVILTDRNEEKLADALEELAKEYGAE-VIQCDLSDEESVEALFDEAVERFGGRIDILVNNAG   82 (241)
T ss_dssp             TSHHHHHHHHHH-HHTTEEEEEEESSHHHHHHHHHHHHHHTTSE-EEESCTTSHHHHHHHHHHHHHHHCSSESEEEEEEE
T ss_pred             CCChHHHHHHHH-HHCCCEEEEEeCChHHHHHHHHHHHHHcCCc-eEeecCcchHHHHHHHHHHHhhcCCCeEEEEeccc
Confidence            389999988888 4589999999999887    33333 34543 433  23323333333333211  47999998776


Q ss_pred             C
Q psy1959         242 G  242 (296)
Q Consensus       242 ~  242 (296)
                      .
T Consensus        83 ~   83 (241)
T PF13561_consen   83 I   83 (241)
T ss_dssp             S
T ss_pred             c
Confidence            4

...

>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=89.32  E-value=2.7  Score=40.22  Aligned_cols=71  Identities=15%  Similarity=0.212  Sum_probs=48.7

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcc-h----HHHHHhcCCcEEEEcCCchhHHHHHHHHhCCCcccE
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSED-K----TDLIRQKGAWAALTFTNEKSLVNKVLEVSGGKYANV  235 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~-~----~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~g~d~  235 (296)
                      .+++|+|+|. |..|+++++++ +..|++|++.|.++. .    .+.+++.|.........    .+.+      .++|+
T Consensus        13 ~~~~i~v~G~-G~sG~a~a~~L-~~~G~~V~~~D~~~~~~~~~~~~~l~~~gi~~~~~~~~----~~~~------~~~dl   80 (458)
T PRK01710         13 KNKKVAVVGI-GVSNIPLIKFL-VKLGAKVTAFDKKSEEELGEVSNELKELGVKLVLGENY----LDKL------DGFDV   80 (458)
T ss_pred             cCCeEEEEcc-cHHHHHHHHHH-HHCCCEEEEECCCCCccchHHHHHHHhCCCEEEeCCCC----hHHh------ccCCE
Confidence            4678999997 99999999999 568999999997543 1    23466667644332211    1112      25799


Q ss_pred             EEECCCCc
Q psy1959         236 VFEAVGGE  243 (296)
Q Consensus       236 vld~~g~~  243 (296)
                      |+-+.|-.
T Consensus        81 VV~Spgi~   88 (458)
T PRK01710         81 IFKTPSMR   88 (458)
T ss_pred             EEECCCCC
Confidence            99988864

>PRK09009 C factor cell-cell signaling protein; Provisional

Probab=89.32  E-value=1.3  Score=37.72  Aligned_cols=74  Identities=19%  Similarity=0.267  Sum_probs=41.2

Q ss_pred             EEEEEcCCCcHHHHHHHHHHHh-CCCEEEEEeCCcchHHHHHhcCCc-EEEEcCCchhHHHHHHHHhCCCcccEEEECCC
Q psy1959         164 TVLVTAAGGGLGLAAVDMATKI-YKAKVIGVCNSEDKTDLIRQKGAW-AALTFTNEKSLVNKVLEVSGGKYANVVFEAVG  241 (296)
Q Consensus       164 ~vlI~Ga~g~vG~aa~~la~~~-~g~~Vi~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~i~~~~~~~g~d~vld~~g  241 (296)
                      +++|+|++|++|...++.+.+. .+..++...+++...  ....... ...+..+ .+..+.+.+..  .++|++|++.|
T Consensus         2 ~vlItGas~gIG~~ia~~l~~~~~~~~v~~~~~~~~~~--~~~~~~~~~~~Dls~-~~~~~~~~~~~--~~id~li~~aG   76 (235)
T PRK09009          2 NILIVGGSGGIGKAMVKQLLERYPDATVHATYRHHKPD--FQHDNVQWHALDVTD-EAEIKQLSEQF--TQLDWLINCVG   76 (235)
T ss_pred             EEEEECCCChHHHHHHHHHHHhCCCCEEEEEccCCccc--cccCceEEEEecCCC-HHHHHHHHHhc--CCCCEEEECCc
Confidence            6899999999999977766332 245666655543321  1110111 1123333 22222333332  37999999998


Q ss_pred             C
Q psy1959         242 G  242 (296)
Q Consensus       242 ~  242 (296)
                      .
T Consensus        77 ~   77 (235)
T PRK09009         77 M   77 (235)
T ss_pred             c
Confidence            6

>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E

Probab=89.09  E-value=2.4  Score=36.80  Aligned_cols=33  Identities=21%  Similarity=0.164  Sum_probs=25.7

Q ss_pred             CcEEEEEcCCCcHHHHHHHHHHHhCCC-EEEEEeCC
Q psy1959         162 KQTVLVTAAGGGLGLAAVDMATKIYKA-KVIGVCNS  196 (296)
Q Consensus       162 g~~vlI~Ga~g~vG~aa~~la~~~~g~-~Vi~~~~~  196 (296)
                      ..+|+|.|. |++|..++..+ ...|. +++.+|.+
T Consensus        11 ~~~VlVvG~-GGvGs~va~~L-ar~GVg~i~LvD~D   44 (231)
T cd00755          11 NAHVAVVGL-GGVGSWAAEAL-ARSGVGKLTLIDFD   44 (231)
T ss_pred             CCCEEEECC-CHHHHHHHHHH-HHcCCCEEEEECCC
Confidence            468999998 99999888777 34677 88877753

coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.

>COG1087 GalE UDP-glucose 4-epimerase [Cell envelope biogenesis, outer membrane]

Probab=89.01  E-value=2.9  Score=37.67  Aligned_cols=77  Identities=14%  Similarity=0.056  Sum_probs=47.9

Q ss_pred             cEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcch-HHHHHhc-CCcEEEEcCCchhHHHHHHHHhCCCcccEEEECC
Q psy1959         163 QTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDK-TDLIRQK-GAWAALTFTNEKSLVNKVLEVSGGKYANVVFEAV  240 (296)
Q Consensus       163 ~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~-~~~~~~~-g~~~~~~~~~~~~~~~~i~~~~~~~g~d~vld~~  240 (296)
                      .+|||+|++|=+|.-++..+ ...|.+|+++|.-... .+.+... +.-..-+..+ .   +.+.+......+|.||.+.
T Consensus         1 ~~iLVtGGAGYIGSHtv~~L-l~~G~~vvV~DNL~~g~~~~v~~~~~~f~~gDi~D-~---~~L~~vf~~~~idaViHFA   75 (329)
T COG1087           1 MKVLVTGGAGYIGSHTVRQL-LKTGHEVVVLDNLSNGHKIALLKLQFKFYEGDLLD-R---ALLTAVFEENKIDAVVHFA   75 (329)
T ss_pred             CeEEEecCcchhHHHHHHHH-HHCCCeEEEEecCCCCCHHHhhhccCceEEecccc-H---HHHHHHHHhcCCCEEEECc
Confidence            36999999999997766555 3479999999974433 2333222 2222233444 2   2344444445899999988


Q ss_pred             CCcc
Q psy1959         241 GGED  244 (296)
Q Consensus       241 g~~~  244 (296)
                      +...
T Consensus        76 a~~~   79 (329)
T COG1087          76 ASIS   79 (329)
T ss_pred             cccc
Confidence            8643

>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1

Probab=88.97  E-value=2.4  Score=34.47  Aligned_cols=44  Identities=18%  Similarity=0.153  Sum_probs=35.1

Q ss_pred             cEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCC
Q psy1959         163 QTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGA  208 (296)
Q Consensus       163 ~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~  208 (296)
                      .+|.++|. |..|...++-+ ...|.+|++.++++++.+.+.+.|+
T Consensus         2 ~~Ig~IGl-G~mG~~~a~~L-~~~g~~v~~~d~~~~~~~~~~~~g~   45 (163)
T PF03446_consen    2 MKIGFIGL-GNMGSAMARNL-AKAGYEVTVYDRSPEKAEALAEAGA   45 (163)
T ss_dssp             BEEEEE---SHHHHHHHHHH-HHTTTEEEEEESSHHHHHHHHHTTE
T ss_pred             CEEEEEch-HHHHHHHHHHH-HhcCCeEEeeccchhhhhhhHHhhh
Confidence            46889997 99998877776 4479999999999999998887774

1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	296
4eye_A	342	Crystal Structure Of A Probable Oxidoreductase From		2e-09
4a27_A	349	Crystal Structure Of Human Synaptic Vesicle Membran		1e-07
1yb5_A	351	Crystal Structure Of Human Zeta-crystallin With Bou		8e-07
3jyl_A	325	Crystal Structures Of Pseudomonas Syringae Pv. Toma		2e-06
1wly_A	333	Crystal Structure Of 2-haloacrylate Reductase Lengt		3e-05
1qor_A	327	Crystal Structure Of Escherichia Coli Quinone Oxido		1e-04
3gms_A	340	Crystal Structure Of Putative Nadph:quinone Reducta		8e-04

>pdb|4EYE|A Chain A, Crystal Structure Of A Probable Oxidoreductase From Mycobacterium Abscessus Solved By Iodide Ion Sad Length = 342

Iteration: 1
 Score = 59.7 bits (143), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 47/199 (23%), Positives = 81/199 (40%), Gaps = 16/199 (8%)
Query: 52  SDLLLYNGSGDAKPTLPLVPGFEFSGTVIEVAXXXXXXXXXXXXXXVLQVGDKVLALNKE 111
            D L+  G    K   P VPG E +G V                   ++ GD+V+A N  
Sbjct: 63  PDYLMTKGEYQLKMEPPFVPGIETAGVVRSAPEGSG-----------IKPGDRVMAFN-- 109
Query: 112 LLHGFSDQCVVHTNDVFKIPEKMTFEHAASLADSYSTAQIVFSRHAKLKEKQXXXXXXXX 171
            + G++++  V  +++   P ++    A +L  +Y T    ++R  +L+  +        
Sbjct: 110 FIGGYAERVAVAPSNILPTPPQLDDAEAVALIANYHTMYFAYARRGQLRAGETVLVLGAA 169
Query: 172 XXXXXXXXDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNKVLEVSGGK 231
                    +A K   AKVI V N    T+ ++  GA   L    E+     V E +GG 
Sbjct: 170 GGIGTAAIQIA-KGMGAKVIAVVNRTAATEFVKSVGADIVLPL--EEGWAKAVREATGGA 226
Query: 232 YANVVFEAVGGEDKTDLIR 250
             ++V + +GG    D +R
Sbjct: 227 GVDMVVDPIGGPAFDDAVR 245

>pdb|4A27|A Chain A, Crystal Structure Of Human Synaptic Vesicle Membrane Protein Vat-1 Homolog-Like Protein Length = 349

Iteration: 1
 Score = 53.5 bits (127), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 33/113 (29%), Positives = 55/113 (48%), Gaps = 12/113 (10%)
Query: 49  INSSDLLLYNGSGDAKPTLPLVPGFEFSGTVIEVAXXXXXXXXXXXXXXVLQVGDKVLAL 108
           +N  DL++  G+ D  P  PLVPGFE SG V  +                 ++GD+V+A 
Sbjct: 42  LNFIDLMVRQGNIDNPPKTPLVPGFECSGIVEALGDSVKG----------YEIGDRVMAF 91
Query: 109 NKELLHGFSDQCVVHTNDVFKIPEKMTFEHAASLADSYSTAQIVFSRHAKLKE 161
                + +++        V+KIP+ M+F  AA+   ++ TA ++    A L+E
Sbjct: 92  VN--YNAWAEVVCTPVEFVYKIPDDMSFSEAAAFPMNFVTAYVMLFEVANLRE 142

>pdb|1YB5|A Chain A, Crystal Structure Of Human Zeta-crystallin With Bound Nadp Length = 351

Iteration: 1
 Score = 50.8 bits (120), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 39/190 (20%), Positives = 80/190 (42%), Gaps = 13/190 (6%)
Query: 49  INSSDLLLYNGSGDAKPTLPLVPGFEFSGTVIEVAXXXXXXXXXXXXXXVLQVGDKVLAL 108
           +N  +  + +G+   KP LP  PG + +G +  V                 + GD+V   
Sbjct: 69  VNPVETYIRSGTYSRKPLLPYTPGSDVAGVIEAVGDNAS----------AFKKGDRVFT- 117
Query: 109 NKELLHGFSDQCVVHTNDVFKIPEKMTFEHAASLADSYSTAQIVFSRHAKLKEKQXXXXX 168
           +  +  G+++  +   + V+K+PEK+ F+  A++   Y TA       A +K  +     
Sbjct: 118 SSTISGGYAEYALAADHTVYKLPEKLDFKQGAAIGIPYFTAYRALIHSACVKAGESVLVH 177
Query: 169 XXXXXXXXXXXDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNKVLEVS 228
                       +A + Y  K++G   +E+   ++ Q GA        E + ++K+ +  
Sbjct: 178 GASGGVGLAACQIA-RAYGLKILGTAGTEEGQKIVLQNGAHEVFNH-REVNYIDKIKKYV 235
Query: 229 GGKYANVVFE 238
           G K  +++ E
Sbjct: 236 GEKGIDIIIE 245

>pdb|3JYL|A Chain A, Crystal Structures Of Pseudomonas Syringae Pv. Tomato Dc3000 Quinone Oxidoreductase Length = 325

Iteration: 1
 Score = 49.7 bits (117), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 38/143 (26%), Positives = 69/143 (48%), Gaps = 3/143 (2%)
Query: 99  LQVGDKVLALNKELLHGFSDQCVVHTNDVFKIPEKMTFEHAASLADSYSTAQIVFSRHAK 158
            +VGD+V A     L  +S+  V+   ++ K+ + ++FE AA+L     T Q +  +  +
Sbjct: 79  FKVGDRV-AYGTGPLGAYSEVHVLPEANLVKLADSVSFEQAAALMLKGLTVQYLLRQTYQ 137
Query: 159 LKEKQXXXXXXXXXXXXXXXXDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEK 218
           +K  +                  A K   AK+IG  +S +K    +  GAW  + +++E 
Sbjct: 138 VKPGEIILFHAAAGGVGSLACQWA-KALGAKLIGTVSSPEKAAHAKALGAWETIDYSHE- 195
Query: 219 SLVNKVLEVSGGKYANVVFEAVG 241
            +  +VLE++ GK   VV++ VG
Sbjct: 196 DVAKRVLELTDGKKCPVVYDGVG 218

>pdb|1WLY|A Chain A, Crystal Structure Of 2-haloacrylate Reductase Length = 333

Iteration: 1
 Score = 45.8 bits (107), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 51/220 (23%), Positives = 90/220 (40%), Gaps = 22/220 (10%)
Query: 47  TRINSSDLLLYNGSGDAKPTL----PLVPGFEFSGTVIEVAXXXXXXXXXXXXXXVLQVG 102
           T I  + L  Y+ +G   P +    P+V GFE +  V EV                  VG
Sbjct: 36  TAIGVNFLDTYHRAGIPHPLVVGEPPIVVGFEAAAVVEEVGPGVTD----------FTVG 85
Query: 103 DKVLALNKELLHGFSDQCVVHTNDVFKIPEKMTFE--HAASLADSYSTAQIVFSRHAKLK 160
           ++V      L   +S + +     + K+P+ +  +  H A L     TAQ +  +  K+K
Sbjct: 86  ERVCTCLPPL-GAYSQERLYPAEKLIKVPKDLDLDDVHLAGLMLKGMTAQYLLHQTHKVK 144
Query: 161 EKQXXXXXXXXXXXXXXXXDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSL 220
                                A  +  A VIG  ++E+K +  R+ G    + ++ +   
Sbjct: 145 PGDYVLIHAAAGGMGHIMVPWARHL-GATVIGTVSTEEKAETARKLGCHHTINYSTQ-DF 202
Query: 221 VNKVLEVSGGKYANVVFEAVGG---EDKTDLIRQKGAWAA 257
              V E++GGK  +VV++++G    +   D +R +G  AA
Sbjct: 203 AEVVREITGGKGVDVVYDSIGKDTLQKSLDCLRPRGMCAA 242

>pdb|1QOR|A Chain A, Crystal Structure Of Escherichia Coli Quinone Oxidoreductase Complexed With Nadph Length = 327

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 48/209 (22%), Positives = 87/209 (41%), Gaps = 18/209 (8%)
Query: 65  PTLPLVPGFEFSGTVIEVAXXXXXXXXXXXXXXVLQVGDKVLALNKELLHGFSDQCVVHT 124
           P+LP   G E +G V +V                ++ GD+V+   +  L  +S    +  
Sbjct: 55  PSLPSGLGTEAAGIVSKVGSGVKH----------IKAGDRVV-YAQSALGAYSSVHNIIA 103
Query: 125 NDVFKIPEKMTFEHAASLADSYSTAQIVFSRHAKLKEKQXXXXXXXXXXXXXXXXDMATK 184
           +    +P  ++FE AA+      T   +  +  ++K  +                  A K
Sbjct: 104 DKAAILPAAISFEQAAASFLKGLTVYYLLRKTYEIKPDEQFLFHAAAGGVGLIACQWA-K 162
Query: 185 IYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNKVLEVSGGKYANVVFEAVGG-- 242
              AK+IG   +  K     + GAW  + +  E+ LV ++ E++GGK   VV+++VG   
Sbjct: 163 ALGAKLIGTVGTAQKAQSALKAGAWQVINY-REEDLVERLKEITGGKKVRVVYDSVGRDT 221
Query: 243 -EDKTDLIRQKGAWAALTFTNEKSLVNKV 270
            E   D ++++G    ++F N    V  V
Sbjct: 222 WERSLDCLQRRGLM--VSFGNSSGAVTGV 248

>pdb|3GMS|A Chain A, Crystal Structure Of Putative Nadph:quinone Reductase From Bacillus Thuringiensis Length = 340

Iteration: 1
 Score = 41.2 bits (95), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 49/207 (23%), Positives = 86/207 (41%), Gaps = 17/207 (8%)
Query: 44  KMMTR-INSSDLLLYNGSGDAKPTLPLVPGFEFSGTVIEVAXXXXXXXXXXXXXXVLQVG 102
           +M+ R IN SDL+   G+   +  LP +PG+E  G V  V                  +G
Sbjct: 38  RMLVRPINPSDLIPITGAYAHRIPLPNIPGYEGVGIVENVGAFVSREL----------IG 87
Query: 103 DKVLALNKELLHGFSDQCVVHTND-VFKIPEKMTFEHAASLADSYSTAQIVFSRHAKLKE 161
            +VL L  E   G   + V  + D V  IP+ +    AA +  +  TA +  +    L+ 
Sbjct: 88  KRVLPLRGE---GTWQEYVKTSADFVVPIPDSIDDFTAAQMYINPLTAWVTCTETLNLQR 144
Query: 162 KQXXXXXXXXXXXXXXXXDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLV 221
                              + ++I   ++I V  +   T+ + + GA A +  T+   L 
Sbjct: 145 NDVLLVNACGSAIGHLFAQL-SQILNFRLIAVTRNNKHTEELLRLGA-AYVIDTSTAPLY 202
Query: 222 NKVLEVSGGKYANVVFEAVGGEDKTDL 248
             V+E++ G  A+   +++GG D  +L
Sbjct: 203 ETVMELTNGIGADAAIDSIGGPDGNEL 229

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	296
4eye_A	342	Probable oxidoreductase; structural genomics, niai	1e-41
3gms_A	340	Putative NADPH:quinone reductase; structural genom	6e-41
1zsy_A	357	Mitochondrial 2-enoyl thioester reductase; medium-	8e-41
3pi7_A	349	NADH oxidoreductase; groes-like fold, NAD(P)-bindi	2e-40
1yb5_A	351	Quinone oxidoreductase; medium-chain dehydrogenase	2e-36
1iz0_A	302	Quinone oxidoreductase; APO-enzyme, riken structur	7e-35
1iz0_A	302	Quinone oxidoreductase; APO-enzyme, riken structur	9e-05
2c0c_A	362	Zinc binding alcohol dehydrogenase, domain contain	2e-34
4a27_A	349	Synaptic vesicle membrane protein VAT-1 homolog-L;	1e-33
3jyn_A	325	Quinone oxidoreductase; rossmann fold, protein-NAD	3e-32
1qor_A	327	Quinone oxidoreductase; HET: NAP; 2.20A {Escherich	6e-32
2j8z_A	354	Quinone oxidoreductase; medium-chain dehydrogenase	7e-32
1gu7_A	364	Enoyl-[acyl-carrier-protein] reductase [NADPH, B-s	3e-30
4dup_A	353	Quinone oxidoreductase; PSI-biology, structural ge	2e-29
1wly_A	333	CAAR, 2-haloacrylate reductase; NADPH-dependent ox	2e-29
3qwb_A	334	Probable quinone oxidoreductase; rossmann fold, qu	3e-29
2eih_A	343	Alcohol dehydrogenase; zinc ION binding protein, s	6e-29
3tqh_A	321	Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella	1e-28
3iup_A	379	Putative NADPH:quinone oxidoreductase; YP_296108.1	2e-28
3gaz_A	343	Alcohol dehydrogenase superfamily protein; oxidore	6e-27
4a0s_A	447	Octenoyl-COA reductase/carboxylase; oxidoreductase	2e-26
3krt_A	456	Crotonyl COA reductase; structural genomics, prote	3e-26
1jvb_A	347	NAD(H)-dependent alcohol dehydrogenase; archaeon,	1e-25
3uog_A	363	Alcohol dehydrogenase; structural genomics, protei	3e-25
2vn8_A	375	Reticulon-4-interacting protein 1; mitochondrion,	5e-23
3slk_A	795	Polyketide synthase extender module 2; rossmann fo	5e-21
2h6e_A	344	ADH-4, D-arabinose 1-dehydrogenase; rossman fold,	1e-20
3jv7_A	345	ADH-A; dehydrogenase, nucleotide binding, rossmann	1e-19
1h2b_A	359	Alcohol dehydrogenase; oxidoreductase, archaea, hy	1e-19
3gqv_A	371	Enoyl reductase; medium-chain reductase (MDR super	2e-17
1vj0_A	380	Alcohol dehydrogenase, zinc-containing; TM0436, st	3e-17
3ip1_A	404	Alcohol dehydrogenase, zinc-containing; structural	2e-16
4ej6_A	370	Putative zinc-binding dehydrogenase; structural ge	3e-16
4a2c_A	346	Galactitol-1-phosphate 5-dehydrogenase; oxidoreduc	3e-16
1pqw_A	198	Polyketide synthase; rossmann fold, dimer, structu	3e-15
4dvj_A	363	Putative zinc-dependent alcohol dehydrogenase Pro;	3e-15
3goh_A	315	Alcohol dehydrogenase, zinc-containing; NP_718042.	4e-15
3fbg_A	346	Putative arginate lyase; structural genomics, unkn	6e-15
2d8a_A	348	PH0655, probable L-threonine 3-dehydrogenase; pyro	7e-15
2hcy_A	347	Alcohol dehydrogenase 1; tetramer of asymmetric di	1e-14
1e3j_A	352	NADP(H)-dependent ketose reductase; oxidoreductase	2e-14
2vz8_A	2512	Fatty acid synthase; transferase, phosphopantethei	3e-14
2cdc_A	366	Glucose dehydrogenase glucose 1-dehydrogenase, DHG	3e-14
3fpc_A	352	NADP-dependent alcohol dehydrogenase; oxydoreducta	1e-12
1pl8_A	356	Human sorbitol dehydrogenase; NAD, oxidoreductase;	1e-12
2b5w_A	357	Glucose dehydrogenase; nucleotide binding motif, o	2e-12
2dq4_A	343	L-threonine 3-dehydrogenase; NAD-dependent, oxidor	5e-12
1tt7_A	330	YHFP; alcohol dehydrogenase, Zn-dependent, NAD, st	2e-11
1rjw_A	339	ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD	2e-11
3m6i_A	363	L-arabinitol 4-dehydrogenase; medium chain dehydro	2e-11
3s2e_A	340	Zinc-containing alcohol dehydrogenase superfamily;	3e-11
1kol_A	398	Formaldehyde dehydrogenase; oxidoreductase; HET: N	2e-10
1xa0_A	328	Putative NADPH dependent oxidoreductases; structur	2e-10
3nx4_A	324	Putative oxidoreductase; csgid, structural genomic	3e-10
2dph_A	398	Formaldehyde dismutase; dismutation of aldehydes,	4e-10
1v3u_A	333	Leukotriene B4 12- hydroxydehydrogenase/prostaglan	1e-09
2fzw_A	373	Alcohol dehydrogenase class III CHI chain; S-nitro	1e-08
2jhf_A	374	Alcohol dehydrogenase E chain; oxidoreductase, met	1e-07
1cdo_A	374	Alcohol dehydrogenase; oxidoreductase, oxidoreduct	2e-07
1e3i_A	376	Alcohol dehydrogenase, class II; HET: NAD; 2.08A {	4e-07
1f8f_A	371	Benzyl alcohol dehydrogenase; rossmann fold, oxido	1e-06
2zb4_A	357	Prostaglandin reductase 2; rossmann fold, alternat	2e-06
3two_A	348	Mannitol dehydrogenase; cinnamyl-alcohol dehydroge	2e-06
1yqd_A	366	Sinapyl alcohol dehydrogenase; lignin, monolignol,	2e-06
2j3h_A	345	NADP-dependent oxidoreductase P1; double bond redu	2e-06
1piw_A	360	Hypothetical zinc-type alcohol dehydrogenase- like	4e-06
1p0f_A	373	NADP-dependent alcohol dehydrogenase; ADH topology	5e-06
2cf5_A	357	Atccad5, CAD, cinnamyl alcohol dehydrogenase; lign	6e-06
1uuf_A	369	YAHK, zinc-type alcohol dehydrogenase-like protein	1e-05
1qzv_F	154	Plant photosystem I: subunit PSAF; photosynthesis,	2e-04

>4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus} Length = 342

 Score =  146 bits (370), Expect = 1e-41
 Identities = 54/195 (27%), Positives = 91/195 (46%), Gaps = 16/195 (8%)

Query: 49  INSSDLLLYNGSGDAKPTLPLVPGFEFSGTVIEVADTKSSSTEEDDEEDVLQVGDKVLAL 108
           +   D L+  G    K   P VPG E +G V    +              ++ GD+V+A 
Sbjct: 60  VCFPDYLMTKGEYQLKMEPPFVPGIETAGVVRSAPEGSG-----------IKPGDRVMAF 108

Query: 109 NKELLHGFSDQCVVHTNDVFKIPEKMTFEHAASLADSYSTAQIVFSRHAKLKEKQTVLVT 168
           N   + G++++  V  +++   P ++    A +L  +Y T    ++R  +L+  +TVLV 
Sbjct: 109 NF--IGGYAERVAVAPSNILPTPPQLDDAEAVALIANYHTMYFAYARRGQLRAGETVLVL 166

Query: 169 AAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNKVLEVS 228
            A GG+G AA+ +A K   AKVI V N    T+ ++  GA   L     +     V E +
Sbjct: 167 GAAGGIGTAAIQIA-KGMGAKVIAVVNRTAATEFVKSVGADIVLPLE--EGWAKAVREAT 223

Query: 229 GGKYANVVFEAVGGE 243
           GG   ++V + +GG 
Sbjct: 224 GGAGVDMVVDPIGGP 238

>3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis} Length = 340

 Score =  143 bits (364), Expect = 6e-41
 Identities = 47/204 (23%), Positives = 85/204 (41%), Gaps = 18/204 (8%)

Query: 49  INSSDLLLYNGSGDAKPTLPLVPGFEFSGTVIEVADTKSSSTEEDDEEDV--LQVGDKVL 106
           IN SDL+   G+   +  LP +PG+E  G V  V               V    +G +VL
Sbjct: 44  INPSDLIPITGAYAHRIPLPNIPGYEGVGIVENVG------------AFVSRELIGKRVL 91

Query: 107 ALNKELLHGFSDQCVVHTNDVFKIPEKMTFEHAASLADSYSTAQIVFSRHAKLKEKQTVL 166
            L       + +      + V  IP+ +    AA +  +  TA +  +    L+    +L
Sbjct: 92  PLRG--EGTWQEYVKTSADFVVPIPDSIDDFTAAQMYINPLTAWVTCTETLNLQRNDVLL 149

Query: 167 VTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNKVLE 226
           V A G  +G     ++ +I   ++I V  +   T+ + + GA   +  +    L   V+E
Sbjct: 150 VNACGSAIGHLFAQLS-QILNFRLIAVTRNNKHTEELLRLGAAYVIDTSTA-PLYETVME 207

Query: 227 VSGGKYANVVFEAVGGEDKTDLIR 250
           ++ G  A+   +++GG D  +L  
Sbjct: 208 LTNGIGADAAIDSIGGPDGNELAF 231

>1zsy_A Mitochondrial 2-enoyl thioester reductase; medium-chain dehydrogenase/reductase, oxidoreductase, 2-ENOY thioester reductase; 1.75A {Homo sapiens} PDB: 2vcy_A Length = 357

 Score =  143 bits (364), Expect = 8e-41
 Identities = 47/208 (22%), Positives = 80/208 (38%), Gaps = 21/208 (10%)

Query: 49  INSSDLLLYNGSGDAKPTLPLVPGFEFSGTVIEVADTKSSSTEEDDEEDV--LQVGDKVL 106
           IN SD+ +  G+    P LP V G E    V+ V              +V  L+ GD V+
Sbjct: 66  INPSDINMIQGNYGLLPELPAVGGNEGVAQVVAVG------------SNVTGLKPGDWVI 113

Query: 107 ALNKELLHGFSDQCVVHTNDVFKIPEKMTFEHAASLADSYSTAQIVFSRHAKLKEKQTVL 166
             N  L   +  + V     + ++P  +  + AA+L  +  TA  +     +L+   +V+
Sbjct: 114 PANAGL-GTWRTEAVFSEEALIQVPSDIPLQSAATLGVNPCTAYRMLMDFEQLQPGDSVI 172

Query: 167 VTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKT----DLIRQKGAWAALTFTNEKSLVN 222
             A+  G+G A + +A      + I V           D ++  GA   +T   E     
Sbjct: 173 QNASNSGVGQAVIQIA-AALGLRTINVVRDRPDIQKLSDRLKSLGAEHVIT-EEELRRPE 230

Query: 223 KVLEVSGGKYANVVFEAVGGEDKTDLIR 250
                       +    VGG+  T+L+R
Sbjct: 231 MKNFFKDMPQPRLALNCVGGKSSTELLR 258

>3pi7_A NADH oxidoreductase; groes-like fold, NAD(P)-binding rossmann fold, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.71A {Mesorhizobium loti} Length = 349

 Score =  142 bits (361), Expect = 2e-40
 Identities = 37/196 (18%), Positives = 69/196 (35%), Gaps = 13/196 (6%)

Query: 49  INSSDLLLYNGSGDAKPTLPLVPGFEFSGTVIEVADTKSSSTEEDDEEDVLQVGDKVLAL 108
           IN SD+    G            GFE  GT++   D         +      VG +V   
Sbjct: 61  INPSDVAFIKGQYGQPRVKGRPAGFEGVGTIVAGGD---------EPYAKSLVGKRVAFA 111

Query: 109 NKELLHG-FSDQCVVHTNDVFKIPEKMTFEHAASLADSYSTAQIVFSRHAKLKEKQTVLV 167
                 G +++  V        + + +  E  A++  +  TA  +F    K + ++  ++
Sbjct: 112 TGLSNWGSWAEYAVAEAAACIPLLDTVRDEDGAAMIVNPLTAIAMFDI-VKQEGEKAFVM 170

Query: 168 TAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNKVLEV 227
           TA    L    + +A K    + I     +++  L++  GA   L           + EV
Sbjct: 171 TAGASQLCKLIIGLA-KEEGFRPIVTVRRDEQIALLKDIGAAHVLNEKAP-DFEATLREV 228

Query: 228 SGGKYANVVFEAVGGE 243
              +   +  +AV G 
Sbjct: 229 MKAEQPRIFLDAVTGP 244

>1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 Length = 351

 Score =  132 bits (334), Expect = 2e-36
 Identities = 48/200 (24%), Positives = 93/200 (46%), Gaps = 23/200 (11%)

Query: 49  INSSDLLLYNGSGDAKPTLPLVPGFEFSGTVIEVADTKSSSTEEDDEEDV--LQVGDKVL 106
           +N  +  + +G+   KP LP  PG + +G +  V             ++    + GD+V 
Sbjct: 69  VNPVETYIRSGTYSRKPLLPYTPGSDVAGVIEAVG------------DNASAFKKGDRVF 116

Query: 107 ALNKELLH--GFSDQCVVHTNDVFKIPEKMTFEHAASLADSYSTAQ-IVFSRHAKLKEKQ 163
                     G+++  +   + V+K+PEK+ F+  A++   Y TA   +    A +K  +
Sbjct: 117 TS---STISGGYAEYALAADHTVYKLPEKLDFKQGAAIGIPYFTAYRALIHS-ACVKAGE 172

Query: 164 TVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNK 223
           +VLV  A GG+GLAA  +A + Y  K++G   +E+   ++ Q GA          + ++K
Sbjct: 173 SVLVHGASGGVGLAACQIA-RAYGLKILGTAGTEEGQKIVLQNGAHEVFNHREV-NYIDK 230

Query: 224 VLEVSGGKYANVVFEAVGGE 243
           + +  G K  +++ E +   
Sbjct: 231 IKKYVGEKGIDIIIEMLANV 250

>1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D Length = 302

 Score =  126 bits (320), Expect = 7e-35
 Identities = 47/195 (24%), Positives = 77/195 (39%), Gaps = 33/195 (16%)

Query: 49  INSSDLLLYNGSGDAKPTLPLVPGFEFSGTVIEVADTKSSSTEEDDEEDVLQVGDKVLAL 108
           +N +D L+  G+   +   P +PG E  G V                      G +  AL
Sbjct: 37  LNFADHLMRLGAYLTRLHPPFIPGMEVVGVV---------------------EGRRYAAL 75

Query: 109 NKELLHG-FSDQCVVHTNDVFKIPEKMTFEHAASLADSYSTAQIVFSRHAKLKEKQTVLV 167
              +  G  +++  V    +  +PE ++ E AA+   S+ TA +   R A+ +  + VLV
Sbjct: 76  ---VPQGGLAERVAVPKGALLPLPEGLSPEEAAAFPVSFLTAYLALKR-AQARPGEKVLV 131

Query: 168 TAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNKVLEV 227
            AA G LG AAV +A +    +V+   +  +K  L    GA  A T+             
Sbjct: 132 QAAAGALGTAAVQVA-RAMGLRVLAAASRPEKLALPLALGAEEAATYAEV------PERA 184

Query: 228 SGGKYANVVFEAVGG 242
                 ++V E  G 
Sbjct: 185 KAWGGLDLVLEVRGK 199

>1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D Length = 302

 Score = 42.5 bits (101), Expect = 9e-05
 Identities = 11/40 (27%), Positives = 20/40 (50%)

Query: 1  VRIDIQCCALNSSDLLLYNGSGDAKPTLPLVPGFEFSGTI 40
          V + ++   LN +D L+  G+   +   P +PG E  G +
Sbjct: 28 VVLRVEAVGLNFADHLMRLGAYLTRLHPPFIPGMEVVGVV 67

>2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A* Length = 362

 Score =  127 bits (320), Expect = 2e-34
 Identities = 55/195 (28%), Positives = 85/195 (43%), Gaps = 17/195 (8%)

Query: 49  INSSDLLLYNGSGDAKPTLPLVPGFEFSGTVIEVADTKSSSTEEDDEEDVLQVGDKVLAL 108
           +N+SD+    G  D     P   GFE  G V+ +  + S             VG  V  +
Sbjct: 65  VNASDINYSAGRYDPSVKPPFDIGFEGIGEVVALGLSAS---------ARYTVGQAVAYM 115

Query: 109 NKELLHGFSDQCVVHTNDVFKIPEKMTFEHAASLADSYSTAQIVFSRHAKLKEKQTVLVT 168
                  F++  VV  +    +P         +L  S +TA I       L E + VLVT
Sbjct: 116 A---PGSFAEYTVVPASIATPVPSVK--PEYLTLLVSGTTAYISLKELGGLSEGKKVLVT 170

Query: 169 AAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNKVLEVS 228
           AA GG G  A+ ++ K  K  VIG C+S++K+  ++  G    + +  E   V  VL+  
Sbjct: 171 AAAGGTGQFAMQLS-KKAKCHVIGTCSSDEKSAFLKSLGCDRPINYKTEP--VGTVLKQE 227

Query: 229 GGKYANVVFEAVGGE 243
             +  +VV+E+VGG 
Sbjct: 228 YPEGVDVVYESVGGA 242

>4a27_A Synaptic vesicle membrane protein VAT-1 homolog-L; oxidoreductase; 2.10A {Homo sapiens} Length = 349

 Score =  124 bits (314), Expect = 1e-33
 Identities = 52/200 (26%), Positives = 92/200 (46%), Gaps = 25/200 (12%)

Query: 49  INSSDLLLYNGSGDAKPTLPLVPGFEFSGTVIEVADTKSSSTEEDDEEDV--LQVGDKVL 106
           +N  DL++  G+ D  P  PLVPGFE SG V  +             + V   ++GD+V+
Sbjct: 42  LNFIDLMVRQGNIDNPPKTPLVPGFECSGIVEALG------------DSVKGYEIGDRVM 89

Query: 107 ALNKELLHG-FSDQCVVHTNDVFKIPEKMTFEHAASLADSYSTA-QIVFSRHAKLKEKQT 164
           A    + +  +++        V+KIP+ M+F  AA+   ++ TA  ++F   A L+E  +
Sbjct: 90  AF---VNYNAWAEVVCTPVEFVYKIPDDMSFSEAAAFPMNFVTAYVMLFEV-ANLREGMS 145

Query: 165 VLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNKV 224
           VLV +AGGG+G A   +         +    S  K + I+         F      V +V
Sbjct: 146 VLVHSAGGGVGQAVAQLC-STVPNVTVFGTASTFKHEAIKDS---VTHLFDRNADYVQEV 201

Query: 225 LEVSGGKYANVVFEAVGGED 244
             +   +  ++V + + G++
Sbjct: 202 KRI-SAEGVDIVLDCLCGDN 220

>3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A* Length = 325

 Score =  120 bits (303), Expect = 3e-32
 Identities = 54/179 (30%), Positives = 89/179 (49%), Gaps = 13/179 (7%)

Query: 65  PTLPLVPGFEFSGTVIEVADTKSSSTEEDDEEDVLQVGDKVLALNKELLHGFSDQCVVHT 124
           P LP   G E +G V  V D          E    +VGD+V      L   +S+  V+  
Sbjct: 55  PFLPSGLGAEGAGVVEAVGD----------EVTRFKVGDRVAYGTGPL-GAYSEVHVLPE 103

Query: 125 NDVFKIPEKMTFEHAASLADSYSTAQIVFSRHAKLKEKQTVLVTAAGGGLGLAAVDMATK 184
            ++ K+ + ++FE AA+L     T Q +  +  ++K  + +L  AA GG+G  A   A K
Sbjct: 104 ANLVKLADSVSFEQAAALMLKGLTVQYLLRQTYQVKPGEIILFHAAAGGVGSLACQWA-K 162

Query: 185 IYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNKVLEVSGGKYANVVFEAVGGE 243
              AK+IG  +S +K    +  GAW  + +++E  +  +VLE++ GK   VV++ VG +
Sbjct: 163 ALGAKLIGTVSSPEKAAHAKALGAWETIDYSHE-DVAKRVLELTDGKKCPVVYDGVGQD 220

>1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 Length = 327

 Score =  120 bits (302), Expect = 6e-32
 Identities = 49/179 (27%), Positives = 82/179 (45%), Gaps = 13/179 (7%)

Query: 65  PTLPLVPGFEFSGTVIEVADTKSSSTEEDDEEDVLQVGDKVLALNKELLHGFSDQCVVHT 124
           P+LP   G E +G V +V                ++ GD+V    +  L  +S    +  
Sbjct: 55  PSLPSGLGTEAAGIVSKVGS----------GVKHIKAGDRV-VYAQSALGAYSSVHNIIA 103

Query: 125 NDVFKIPEKMTFEHAASLADSYSTAQIVFSRHAKLKEKQTVLVTAAGGGLGLAAVDMATK 184
           +    +P  ++FE AA+      T   +  +  ++K  +  L  AA GG+GL A   A K
Sbjct: 104 DKAAILPAAISFEQAAASFLKGLTVYYLLRKTYEIKPDEQFLFHAAAGGVGLIACQWA-K 162

Query: 185 IYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNKVLEVSGGKYANVVFEAVGGE 243
              AK+IG   +  K     + GAW  + +  E  LV ++ E++GGK   VV+++VG +
Sbjct: 163 ALGAKLIGTVGTAQKAQSALKAGAWQVINYREE-DLVERLKEITGGKKVRVVYDSVGRD 220

>2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A* Length = 354

 Score =  120 bits (303), Expect = 7e-32
 Identities = 47/198 (23%), Positives = 84/198 (42%), Gaps = 19/198 (9%)

Query: 49  INSSDLLLYNGSGDAKPTLPLVPGFEFSGTVIEVADTKSSSTEEDDEEDVLQVGDKVLAL 108
           +N +DL+   G  D  P    + G E SG V E+                 ++GD  +AL
Sbjct: 61  LNRADLMQRQGQYDPPPGASNILGLEASGHVAELGPGCQGH---------WKIGDTAMAL 111

Query: 109 NKELLHG--FSDQCVVHTNDVFKIPEKMTFEHAASLADSYSTA-QIVFSRHAKLKEKQTV 165
               L G   +    V    +  IPE +T   AA++ +++ TA Q++      ++    V
Sbjct: 112 ----LPGGGQAQYVTVPEGLLMPIPEGLTLTQAAAIPEAWLTAFQLLHLV-GNVQAGDYV 166

Query: 166 LVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNKVL 225
           L+ A   G+G AA+ +  ++  A  +    S+ K  +  + GA A   +  E       L
Sbjct: 167 LIHAGLSGVGTAAIQLT-RMAGAIPLVTAGSQKKLQMAEKLGAAAGFNYKKE-DFSEATL 224

Query: 226 EVSGGKYANVVFEAVGGE 243
           + + G   N++ + +GG 
Sbjct: 225 KFTKGAGVNLILDCIGGS 242

>1gu7_A Enoyl-[acyl-carrier-protein] reductase [NADPH, B-specific] 1,mitochondrial; oxidoreductase, thioester reduction, fatty acids; 1.70A {Candida tropicalis} SCOP: b.35.1.2 c.2.1.1 PDB: 1guf_A* 1n9g_B* 1n9g_A* 1gyr_A 1h0k_A Length = 364

 Score =  115 bits (291), Expect = 3e-30
 Identities = 44/272 (16%), Positives = 83/272 (30%), Gaps = 66/272 (24%)

Query: 1   VRIDIQCCALNSSDLLLYNGSGDAKPTLPLVPGFEFSGTIIEKKMMTRINSSDLLLYNGS 60
           V +      +N SD+    G   +KP      G                           
Sbjct: 36  VIVKTLGSPVNPSDINQIQGVYPSKPAKTTGFG--------------------------- 68

Query: 61  GDAKPTLPLVPGFEFSGTVIEVADTKSSSTEEDDEEDV--LQVGDKVLALNKELLHGFSD 118
                      G E    VI+V              +V  L+ GD V+  +      +  
Sbjct: 69  ---TTEPAAPCGNEGLFEVIKVG------------SNVSSLEAGDWVIPSHVNF-GTWRT 112

Query: 119 QCVVHTNDVFKI-----------PEKMTFEHAASLADSYSTAQIVFSRHAKLKEKQTVLV 167
             + + +D  K+           P  +T    A+++ +  TA ++ + + KL   +   +
Sbjct: 113 HALGNDDDFIKLPNPAQSKANGKPNGLTINQGATISVNPLTAYLMLTHYVKLTPGKDWFI 172

Query: 168 -TAAGGGLGLAAVDMATKIYKAKVIGVC----NSEDKTDLIRQKGAWAALTFTNE--KSL 220
                  +G  A  +  K+     I V     N ++    +++ GA   +T      +  
Sbjct: 173 QNGGTSAVGKYASQIG-KLLNFNSISVIRDRPNLDEVVASLKELGATQVITEDQNNSREF 231

Query: 221 VNKVLEV--SGGKYANVVFEAVGGEDKTDLIR 250
              + E     G  A +    VGG+  T + R
Sbjct: 232 GPTIKEWIKQSGGEAKLALNCVGGKSSTGIAR 263

>4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli} Length = 353

 Score =  113 bits (286), Expect = 2e-29
 Identities = 41/198 (20%), Positives = 80/198 (40%), Gaps = 21/198 (10%)

Query: 49  INSSDLLLYNGSGDAKPTLPLVPGFEFSGTVIEVADTKSSSTEEDDEEDVLQVGDKVLAL 108
           +N  D+    GS         + G E SG ++ V                  VGDKV  L
Sbjct: 67  VNRPDIAQRQGSYPPPKDASPILGLELSGEIVGVGP----------GVSGYAVGDKVCGL 116

Query: 109 NKELLHG--FSDQCVVHTNDVFKIPEKMTFEHAASLADSYSTA-QIVFSRHAKLKEKQTV 165
                +G  +++ C++    +   P+      AA+L +++ T    +F   A L E ++V
Sbjct: 117 ----ANGGAYAEYCLLPAGQILPFPKGYDAVKAAALPETFFTVWANLFQM-AGLTEGESV 171

Query: 166 LVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNKVL 225
           L+     G+G  A+ +A + + A+V     S  K +   + GA   + + +E      + 
Sbjct: 172 LIHGGTSGIGTTAIQLA-RAFGAEVYATAGSTGKCEACERLGAKRGINYRSE-DFAAVIK 229

Query: 226 EVSGGKYANVVFEAVGGE 243
               G+  +++ + +G  
Sbjct: 230 AE-TGQGVDIILDMIGAA 246

>1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP} Length = 333

 Score =  113 bits (284), Expect = 2e-29
 Identities = 48/183 (26%), Positives = 83/183 (45%), Gaps = 19/183 (10%)

Query: 65  PTLPLVPGFEFSGTVIEVADTKSSSTEEDDEEDV--LQVGDKVLALNKELLHGFSDQCVV 122
              P+V GFE +  V EV               V    VG++V      L   +S + + 
Sbjct: 58  GEPPIVVGFEAAAVVEEVG------------PGVTDFTVGERVCTCLPPL-GAYSQERLY 104

Query: 123 HTNDVFKIPEKMTFEHA--ASLADSYSTAQIVFSRHAKLKEKQTVLVTAAGGGLGLAAVD 180
               + K+P+ +  +    A L     TAQ +  +  K+K    VL+ AA GG+G   V 
Sbjct: 105 PAEKLIKVPKDLDLDDVHLAGLMLKGMTAQYLLHQTHKVKPGDYVLIHAAAGGMGHIMVP 164

Query: 181 MATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNKVLEVSGGKYANVVFEAV 240
            A +   A VIG  ++E+K +  R+ G    + ++ +      V E++GGK  +VV++++
Sbjct: 165 WA-RHLGATVIGTVSTEEKAETARKLGCHHTINYSTQ-DFAEVVREITGGKGVDVVYDSI 222

Query: 241 GGE 243
           G +
Sbjct: 223 GKD 225

>3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A* Length = 334

 Score =  112 bits (283), Expect = 3e-29
 Identities = 46/190 (24%), Positives = 82/190 (43%), Gaps = 23/190 (12%)

Query: 60  SGDAKPTLPLVPGFEFSGTVIEVADTKSSSTEEDDEEDV--LQVGDKVLALNKELLHGFS 117
            G      P V G E SGTV+               + V   +VGD+V  ++      F+
Sbjct: 56  KGIYPCEKPYVLGREASGTVVAKG------------KGVTNFEVGDQVAYIS---NSTFA 100

Query: 118 DQCVVH-TNDVFKIPEKMTFEHAASLADS---YSTAQIVFSRHAKLKEKQTVLVTAAGGG 173
               +     V K+P+  + E     A       TA    +    +K+   VL+ AA GG
Sbjct: 101 QYSKISSQGPVMKLPKGTSDEELKLYAAGLLQVLTALSFTNEAYHVKKGDYVLLFAAAGG 160

Query: 174 LGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNKVLEVSGGKYA 233
           +GL    +  K+  A  I V ++++K  + ++ GA   +  + E  ++ +VL+ + GK  
Sbjct: 161 VGLILNQLL-KMKGAHTIAVASTDEKLKIAKEYGAEYLINASKE-DILRQVLKFTNGKGV 218

Query: 234 NVVFEAVGGE 243
           +  F++VG +
Sbjct: 219 DASFDSVGKD 228

>2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus} Length = 343

 Score =  111 bits (281), Expect = 6e-29
 Identities = 54/223 (24%), Positives = 93/223 (41%), Gaps = 43/223 (19%)

Query: 49  INSSDLLLYNGSGDAKPTLPLVPGFEFSGTVIEVADTKSSSTEEDDEEDV--LQVGDKVL 106
           +N  D+ +  G    K  LP V G + SG V  V               V     GD+V+
Sbjct: 39  LNHLDVWVRKGVASPKLPLPHVLGADGSGVVDAVG------------PGVEGFAPGDEVV 86

Query: 107 ALNKELLH-------------------------GFSDQCVVHTNDVFKIPEKMTFEHAAS 141
                                             +++  V+   ++   P+ ++FE AA+
Sbjct: 87  INPGLSCGRCERCLAGEDNLCPRYQILGEHRHGTYAEYVVLPEANLAPKPKNLSFEEAAA 146

Query: 142 LADSYSTA-QIVFSRHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKT 200
           +  ++ TA Q+V  +   ++    VLV AAG G+ +AA+ +A K++ A+VI    SEDK 
Sbjct: 147 IPLTFLTAWQMVVDK-LGVRPGDDVLVMAAGSGVSVAAIQIA-KLFGARVIATAGSEDKL 204

Query: 201 DLIRQKGAWAALTFTNEKSLVNKVLEVSGGKYANVVFEAVGGE 243
              +  GA   + +T+      +V  ++GGK A+ V +  G  
Sbjct: 205 RRAKALGADETVNYTHP-DWPKEVRRLTGGKGADKVVDHTGAL 246

>3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii} Length = 321

 Score =  110 bits (278), Expect = 1e-28
 Identities = 54/210 (25%), Positives = 86/210 (40%), Gaps = 29/210 (13%)

Query: 49  INSSDLLLYNGSGDAKP----TLPLVPGFEFSGTVIEVADTKSSSTEEDDEEDV--LQVG 102
           +N  D    NGSG         LP   G++FSG VIE+              DV  + +G
Sbjct: 45  LNPIDYKTRNGSGFVAKKLKNNLPSGLGYDFSGEVIELG------------SDVNNVNIG 92

Query: 103 DKVLALNKELLHG--FSDQCVVHTNDVFKIPEKMTFEHAASLADSYSTAQIVFSRHAKLK 160
           DKV+ +     H   +++      + + +  EK++F  AASL  +  TA       A++K
Sbjct: 93  DKVMGIAGFPDHPCCYAEYVCASPDTIIQKLEKLSFLQAASLPTAGLTALQAL-NQAEVK 151

Query: 161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSL 220
           +   VL+ A  GG+G  A+ +A K     VI    S+     ++  GA   + +  E   
Sbjct: 152 QGDVVLIHAGAGGVGHLAIQLA-KQKGTTVITTA-SKRNHAFLKALGAEQCINYHEE--- 206

Query: 221 VNKVLEVSGGKYANVVFEAVGGEDKTDLIR 250
               L        + V + VGG+     I 
Sbjct: 207 --DFLLAISTPV-DAVIDLVGGDVGIQSID 233

>3iup_A Putative NADPH:quinone oxidoreductase; YP_296108.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE NDP; 1.70A {Ralstonia eutropha} Length = 379

 Score =  111 bits (278), Expect = 2e-28
 Identities = 49/250 (19%), Positives = 86/250 (34%), Gaps = 26/250 (10%)

Query: 1   VRIDIQCCALNSSDLLLYNGSGDAKPTLPLVPGFEFSGTIIEKKMMTRINSSDLLLYNGS 60
           V I I+   LN SDL L  G+ D       +   + SGT     +  R+          S
Sbjct: 35  VLIRIEASPLNPSDLGLLFGAAD-------MSTAKASGTAERPIVTARVPEG----AMRS 83

Query: 61  GDAKPTLPLVPGFEFSGTVIEVADTKSSSTEEDDEEDVLQVGDKVLALNKELLHGFSDQC 120
              +    +  G E +G V+E                   +  K +A        +S   
Sbjct: 84  MAGRLDASMPVGNEGAGVVVEA----------GSSPAAQALMGKTVAAIG--GAMYSQYR 131

Query: 121 VVHTNDVFKIPEKMTFEHAASLADSYSTAQIVFSRHAKLKEKQTVLVTAAGGGLGLAAVD 180
            +  +    +PE  T    AS   +  TA  +     +L+    ++ TAA   LG     
Sbjct: 132 CIPADQCLVLPEGATPADGASSFVNPLTALGMV-ETMRLEGHSALVHTAAASNLGQMLNQ 190

Query: 181 MATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNKVLEVSGGKYANVVFEAV 240
           +       K++ +   +++ DL++ +GA          + +  + E      A + F+A 
Sbjct: 191 IC-LKDGIKLVNIVRKQEQADLLKAQGAVHVCN-AASPTFMQDLTEALVSTGATIAFDAT 248

Query: 241 GGEDKTDLIR 250
           GG      I 
Sbjct: 249 GGGKLGGQIL 258

>3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II, alcohol dehydrogenase superf structural genomics; 1.96A {Novosphingobium aromaticivorans} Length = 343

 Score =  106 bits (267), Expect = 6e-27
 Identities = 46/202 (22%), Positives = 82/202 (40%), Gaps = 25/202 (12%)

Query: 49  INSSDLLLYNGSG-DAKPTLPLVPGFEFSGTVIEVADTKSSSTEEDDEEDV--LQVGDKV 105
            N  D  +  G    A+  LP + G + +GTV+ V              +V   +VGD V
Sbjct: 44  TNPLDAKIRAGEAPHAQQPLPAILGMDLAGTVVAVG------------PEVDSFRVGDAV 91

Query: 106 LALNKELLH---GFSDQCVVHTNDVFKIPEKMTFEHAASLADSYSTA-QIVFSRHAKLKE 161
             L   +       +    V    +   P  +T   A+ L   + TA + +  R A++++
Sbjct: 92  FGLTGGVGGLQGTHAQFAAVDARLLASKPAALTMRQASVLPLVFITAWEGLVDR-AQVQD 150

Query: 162 KQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLV 221
            QTVL+   GGG+G  A+ +A     A+V          + +R  GA         +   
Sbjct: 151 GQTVLIQGGGGGVGHVAIQIA-LARGARVFATA-RGSDLEYVRDLGATPID---ASREPE 205

Query: 222 NKVLEVSGGKYANVVFEAVGGE 243
           +   E + G+  ++V++ +GG 
Sbjct: 206 DYAAEHTAGQGFDLVYDTLGGP 227

>4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase, cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A {Streptomyces SP} PDB: 4a10_A Length = 447

 Score =  106 bits (267), Expect = 2e-26
 Identities = 46/276 (16%), Positives = 80/276 (28%), Gaps = 56/276 (20%)

Query: 1   VRIDIQCCALNSSDLLLYNGSGDAKPTLPLVPGFEFSGTIIEKKMMTRINSSDLLLYNGS 60
           V + +   ++N + +                   +                       G 
Sbjct: 65  VLVAVMASSINYNTVWSAMFEPIPTFHFLKQNARQ----------------------GGW 102

Query: 61  GDAKPTLPLVPGFEFSGTVIEV--------------ADTKSSSTEEDDEEDVLQVGDKVL 106
                    V G + SG V+                        +E        +G +  
Sbjct: 103 ATRHDQPYHVLGSDCSGVVVRTGIGVRRWKPGDHVIVHPAHVDEQEPATHGDGMLGTEQR 162

Query: 107 ALNKELLHG-FSDQCVVHTNDVFKIPEKMTFEHAASLADSYSTA--QIVFSRHAKLKEKQ 163
           A   E   G  ++  VV  + +   P  +T+E AA       TA   +V  R A++K+  
Sbjct: 163 AWGFETNFGGLAEYGVVRASQLLPKPAHLTWEEAAVSPLCAGTAYRMLVSDRGAQMKQGD 222

Query: 164 TVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAAL----------- 212
            VL+  A GGLG  A+    K      + V +S  K   +R  G    +           
Sbjct: 223 IVLIWGASGGLGSYAIQFV-KNGGGIPVAVVSSAQKEAAVRALGCDLVINRAELGITDDI 281

Query: 213 -----TFTNEKSLVNKVLEVSGGKYANVVFEAVGGE 243
                        + K++    G+  ++VFE  G  
Sbjct: 282 ADDPRRVVETGRKLAKLVVEKAGREPDIVFEHTGRV 317

>3krt_A Crotonyl COA reductase; structural genomics, protein structure initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces coelicolor} PDB: 3hzz_A Length = 456

 Score =  106 bits (266), Expect = 3e-26
 Identities = 55/289 (19%), Positives = 92/289 (31%), Gaps = 82/289 (28%)

Query: 1   VRIDIQCCALNSSDLLLYNGSGDAKPTLPLVPGFEFSGTIIEKKMMTRINSSDLLLYNGS 60
             + +   ++N + +        +        G                           
Sbjct: 73  ALVAVMASSVNYNSVHTSIFEPLSTFGFLERYGRV-----------------------SD 109

Query: 61  GDAKPTLPL-VPGFEFSGTVIEVADTKSSSTEEDDEEDV--LQVGDKVLA---------- 107
              +  LP  V G + +G V+                 V   Q GD+V+A          
Sbjct: 110 LAKRHDLPYHVIGSDLAGVVLRTG------------PGVNAWQAGDEVVAHCLSVELESS 157

Query: 108 --------------LNKELLHG-FSDQCVVHTNDVFKIPEKMTFEHAASLADSYSTA--Q 150
                            E   G  ++  +V +N +   P+ +++E AA+     STA  Q
Sbjct: 158 DGHNDTMLDPEQRIWGFETNFGGLAEIALVKSNQLMPKPDHLSWEEAAAPGLVNSTAYRQ 217

Query: 151 IVFSRHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGA-- 208
           +V    A +K+   VL+  A GGLG  A   A     A  I V +S  K ++ R  GA  
Sbjct: 218 LVSRNGAGMKQGDNVLIWGASGGLGSYATQFA-LAGGANPICVVSSPQKAEICRAMGAEA 276

Query: 209 --------------WAALTFTNEKSLVNKVLEVSGGKYANVVFEAVGGE 243
                                  K    ++ E++GG+  ++VFE  G E
Sbjct: 277 IIDRNAEGYRFWKDENTQDPKEWKRFGKRIRELTGGEDIDIVFEHPGRE 325

>1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A* Length = 347

 Score =  103 bits (259), Expect = 1e-25
 Identities = 48/229 (20%), Positives = 82/229 (35%), Gaps = 52/229 (22%)

Query: 52  SDLLLYNG-------SGDAKPTLPLVPGFEFSGTVIEVADTKSSSTEEDDEEDV--LQVG 102
           SD+ +  G         D    LP+  G E +G + EV             ++V     G
Sbjct: 40  SDVHMRQGRFGNLRIVEDLGVKLPVTLGHEIAGKIEEVG------------DEVVGYSKG 87

Query: 103 DKV--------------------LALNKELLH-----GFSDQCVVHTNDVFKIPEKMTFE 137
           D V                    L  +   L       +++  +V          ++   
Sbjct: 88  DLVAVNPWQGEGNCYYCRIGEEHLCDSPRWLGINFDGAYAEYVIVPHYKYMYKLRRLNAV 147

Query: 138 HAASLADSYSTAQIVFS--RHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCN 195
            AA L  S  T    +   R A L   +T+LV  AGGGLG  AV +A  +  A +IGV  
Sbjct: 148 EAAPLTCSGITT---YRAVRKASLDPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDV 204

Query: 196 SEDKTDLIRQKGAWAALTFTNEKSLVNKVLEVSGGKYANVVFEAVGGED 244
            E+  +  ++ GA   +  +  +  + ++  ++  K  + V +    E 
Sbjct: 205 REEAVEAAKRAGADYVINAS-MQDPLAEIRRITESKGVDAVIDLNNSEK 252

>3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021} Length = 363

 Score =  102 bits (257), Expect = 3e-25
 Identities = 45/220 (20%), Positives = 78/220 (35%), Gaps = 41/220 (18%)

Query: 49  INSSDLLLYNGSGDAKPTLPLVPGFEFSGTVIEVADTKSSSTEEDDEEDV--LQVGDKVL 106
           +N  D L+           P VP  + SG V  V             + V   + GD+V+
Sbjct: 65  LNYRDKLVLETGMGLDLAFPFVPASDMSGVVEAVG------------KSVTRFRPGDRVI 112

Query: 107 AL-------------NKELLH---------GFSDQCVVHTNDVFKIPEKMTFEHAASLAD 144
           +               +   +           S+  V+        P+ +    A++L  
Sbjct: 113 STFAPGWLDGLRPGTGRTPAYETLGGAHPGVLSEYVVLPEGWFVAAPKSLDAAEASTLPC 172

Query: 145 SYSTA-QIVFSRHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLI 203
           +  TA   +  +   L+    V+V   GG   L  + +A K   A+VI   +S +K D  
Sbjct: 173 AGLTAWFALVEK-GHLRAGDRVVVQGTGGV-ALFGLQIA-KATGAEVIVTSSSREKLDRA 229

Query: 204 RQKGAWAALTFTNEKSLVNKVLEVSGGKYANVVFEAVGGE 243
              GA   +    E   V +V  ++G + A+ + E  GG 
Sbjct: 230 FALGADHGINRLEED-WVERVYALTGDRGADHILEIAGGA 268

>2vn8_A Reticulon-4-interacting protein 1; mitochondrion, transit peptide, receptor inhibitor; HET: NDP CIT; 2.1A {Homo sapiens} Length = 375

 Score = 96.3 bits (240), Expect = 5e-23
 Identities = 52/199 (26%), Positives = 84/199 (42%), Gaps = 25/199 (12%)

Query: 59  GSGDAKPTLPLVPGFEFSGTVIEVADTKSSSTEEDDEEDV--LQVGDKVLALNKELLHG- 115
                    PL  G + SG V+E               DV   + GD+V A       G 
Sbjct: 86  HVKIKGEEFPLTLGRDVSGVVMECG------------LDVKYFKPGDEVWAAVPPWKQGT 133

Query: 116 FSDQCVVHTNDVFKIPEKMTFEHAASLADSYSTAQIVFSRHAKLKEK----QTVLVTAAG 171
            S+  VV  N+V   P+ +T   AASL     TA    ++   L +K    + VL+  A 
Sbjct: 134 LSEFVVVSGNEVSHKPKSLTHTQAASLPYVALTAWSAINKVGGLNDKNCTGKRVLILGAS 193

Query: 172 GGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNKVLEVSGGK 231
           GG+G  A+ +  K + A V  VC S+D ++L+R+ GA   + + +     +   ++   K
Sbjct: 194 GGVGTFAIQVM-KAWDAHVTAVC-SQDASELVRKLGADDVIDYKSG----SVEEQLKSLK 247

Query: 232 YANVVFEAVGGEDKTDLIR 250
             + + + VGG  +T    
Sbjct: 248 PFDFILDNVGGSTETWAPD 266

>3slk_A Polyketide synthase extender module 2; rossmann fold, NADPH, oxidoreductase; HET: NDP; 3.00A {Saccharopolyspora spinosa} Length = 795

 Score = 92.1 bits (229), Expect = 5e-21
 Identities = 39/156 (25%), Positives = 65/156 (41%), Gaps = 22/156 (14%)

Query: 49  INSSDLLLYNGSGDAKPTLPLVPGFEFSGTVIEVADTKSSSTEEDDEEDV--LQVGDKVL 106
           +N  D L+  G      +L    G E +G V+E                V  L  GD+V+
Sbjct: 250 VNFRDALIALGMYPGVASL----GSEGAGVVVETG------------PGVTGLAPGDRVM 293

Query: 107 ALNKELLHGFSDQCVVHTNDVFKIPEKMTFEHAASLADSYSTAQIVFSRHAKLKEKQTVL 166
            +       F    V     V +IP   +F  AAS+   + TA       A L+  +++L
Sbjct: 294 GMIP---KAFGPLAVADHRMVTRIPAGWSFARAASVPIVFLTAYYALVDLAGLRPGESLL 350

Query: 167 VTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDL 202
           V +A GG+G+AA+ +A +   A+V    + +    +
Sbjct: 351 VHSAAGGVGMAAIQLA-RHLGAEVYATASEDKWQAV 385

>2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus} Length = 344

 Score = 89.2 bits (222), Expect = 1e-20
 Identities = 41/222 (18%), Positives = 85/222 (38%), Gaps = 43/222 (19%)

Query: 52  SDLLLYNGS-GDAKPTLPLVPGFEFSGTVIEVADTKSSSTEEDDEEDVLQVGDKVL---- 106
           +DL ++ G        LP++ G E +GT++EV +              ++ GD V+    
Sbjct: 43  TDLRVWKGVEAKQGFRLPIILGHENAGTIVEVGELAK-----------VKKGDNVVVYAT 91

Query: 107 -------------------ALNKELLH--GFSDQCVVHTNDVFKIPEKMTFEHAASLADS 145
                               +        GFS+  +V ++        ++   AA LAD+
Sbjct: 92  WGDLTCRYCREGKFNICKNQIIPGQTTNGGFSEYMLVKSSRWLVKLNSLSPVEAAPLADA 151

Query: 146 YSTA--QIVFSRHAKLKEKQTVLVTAAGGGLGLAAVDMATKI-YKAKVIGVCNSEDKTDL 202
            +T+   I  +     K  + V++    GGL +  + +   +     ++G+  S+   D 
Sbjct: 152 GTTSMGAIRQALPFISKFAEPVVIVNGIGGLAVYTIQILKALMKNITIVGISRSKKHRDF 211

Query: 203 IRQKGAWAALTFTNEKSLVNKVLEVSGGKYANVVFEAVGGED 244
             + GA         K   + + +++ G  A++  + VG E+
Sbjct: 212 ALELGADYVS---EMKDAESLINKLTDGLGASIAIDLVGTEE 250

>3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A* Length = 345

 Score = 86.9 bits (216), Expect = 1e-19
 Identities = 48/227 (21%), Positives = 77/227 (33%), Gaps = 49/227 (21%)

Query: 52  SDLLLYNGSGDAKPT-LPLVPGFEFSGTVIEVADTKSSSTEEDDEEDV--LQVGDKVL-- 106
           SD+ + +         LPL  G E  GTV E+             E V    VGD V   
Sbjct: 40  SDIFVMDMPAAQYAYGLPLTLGHEGVGTVAELG------------EGVTGFGVGDAVAVY 87

Query: 107 ---------------------ALNKELLH-------GFSDQCVVHTNDVFKIPEKMTFEH 138
                                A +  +           ++  +V +         +    
Sbjct: 88  GPWGCGACHACARGRENYCTRAADLGITPPGLGSPGSMAEYMIVDSARHLVPIGDLDPVA 147

Query: 139 AASLADSYSTAQI-VFSRHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSE 197
           AA L D+  T    +      L    T +V    GGLG   + +   +  A+VI V   +
Sbjct: 148 AAPLTDAGLTPYHAISRVLPLLGPGSTAVVIGV-GGLGHVGIQILRAVSAARVIAVDLDD 206

Query: 198 DKTDLIRQKGAWAALTFTNEKSLVNKVLEVSGGKYANVVFEAVGGED 244
           D+  L R+ G  A     +     + + E++GG+ A  VF+ VG + 
Sbjct: 207 DRLALAREVG--ADAAVKSGAGAADAIRELTGGQGATAVFDFVGAQS 251

>1h2b_A Alcohol dehydrogenase; oxidoreductase, archaea, hyperthermophIle, zinc; HET: OCA NAJ; 1.62A {Aeropyrum pernix} SCOP: b.35.1.2 c.2.1.1 Length = 359

 Score = 86.6 bits (215), Expect = 1e-19
 Identities = 57/226 (25%), Positives = 84/226 (37%), Gaps = 48/226 (21%)

Query: 52  SDLLLYNGS--GDAKPTLPLVPGFEFSGTVIEVADTKSSSTEEDDEEDV--LQVGDKVL- 106
           +DL L  G      +P LP   G E  G + EVA            E V  L+ GD V+ 
Sbjct: 56  TDLHLVQGMWHELLQPKLPYTLGHENVGYIEEVA------------EGVEGLEKGDPVIL 103

Query: 107 ----------------------ALNKELLH--GFSDQCVVHTNDVFKIPEKMTFEH---A 139
                                      L    GF++        V K+P+ ++ E     
Sbjct: 104 HPAVTDGTCLACRAGEDMHCENLEFPGLNIDGGFAEFMRTSHRSVIKLPKDISREKLVEM 163

Query: 140 ASLADSYSTAQI-VFSRHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSED 198
           A LAD+  TA   V      L     V +   GG LG  AV +   +  A VI +   E+
Sbjct: 164 APLADAGITAYRAVKKAARTLYPGAYVAIVGVGG-LGHIAVQLLKVMTPATVIALDVKEE 222

Query: 199 KTDLIRQKGAWAALTFTNEKSLVNKVLEVSGGKYANVVFEAVGGED 244
           K  L  + GA   +     +  V +V+E++ G+  NV  + VG + 
Sbjct: 223 KLKLAERLGADHVVDAR--RDPVKQVMELTRGRGVNVAMDFVGSQA 266

>3gqv_A Enoyl reductase; medium-chain reductase (MDR superfamily), rossmann fold, NAD binding, oxidoreductase; HET: NAP; 1.74A {Aspergillus terreus} PDB: 3b6z_A* 3b70_A* Length = 371

 Score = 80.1 bits (198), Expect = 2e-17
 Identities = 40/200 (20%), Positives = 66/200 (33%), Gaps = 36/200 (18%)

Query: 65  PTLPLVPGFEFSGTVIEVADTKSSSTEEDDEEDV--LQVGDKVLAL-----NKELLHG-F 116
            T     G +++GTV+ V              DV  +QVGD+V         +    G F
Sbjct: 60  ATPWAFLGTDYAGTVVAVG------------SDVTHIQVGDRVYGAQNEMCPRTPDQGAF 107

Query: 117 SDQCVVHTNDVFKIPEKMTFEHAASLADSYSTAQIVF------------SRHAKLKEKQT 164
           S   V       KIP+ ++FE AA+L    STA +               +     +   
Sbjct: 108 SQYTVTRGRVWAKIPKGLSFEQAAALPAGISTAGLAMKLLGLPLPSPSADQPPTHSKPVY 167

Query: 165 VLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNKV 224
           VLV           + M  ++     I  C S    DL + +GA     +    +L   +
Sbjct: 168 VLVYGGSTATATVTMQML-RLSGYIPIATC-SPHNFDLAKSRGAEEVFDYRAP-NLAQTI 224

Query: 225 LEVSGGKYANVVFEAVGGED 244
              +         + +   +
Sbjct: 225 RTYTKNNLR-YALDCITNVE 243

>1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1 Length = 380

 Score = 80.0 bits (198), Expect = 3e-17
 Identities = 52/228 (22%), Positives = 92/228 (40%), Gaps = 46/228 (20%)

Query: 52  SDLLLYNGSGDAKPTLPLVPGFEFSGTVIEVADTKSSSTEEDDEEDVLQVGDKVLAL--- 108
           SD+ ++ G  D +  LP++ G E +G V+EV        + D   ++L+ GD ++     
Sbjct: 57  SDVHMFRGE-DPRVPLPIILGHEGAGRVVEVN-----GEKRDLNGELLKPGDLIVWNRGI 110

Query: 109 ----------------------------NKELLH---GFSDQCVVHT-NDVFKIPEKMTF 136
                                         E  H    +S   V+    DV K+ EK   
Sbjct: 111 TCGECYWCKVSKEPYLCPNRKVYGINRGCSEYPHLRGCYSSHIVLDPETDVLKVSEKDDL 170

Query: 137 EHAASLADSYSTAQIVFSRHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKA-KVIGVCN 195
           +  A    S +TA   F  + +    +TV++  AG  LGL  V +  +   A  VI +  
Sbjct: 171 DVLAMAMCSGATAYHAFDEYPESFAGKTVVIQGAGP-LGLFGV-VIARSLGAENVIVIAG 228

Query: 196 SEDKTDLIRQKGAWAAL--TFTNEKSLVNKVLEVSGGKYANVVFEAVG 241
           S ++  L  + GA   L    T+ +     +++++ G+ A+ + EA G
Sbjct: 229 SPNRLKLAEEIGADLTLNRRETSVEERRKAIMDITHGRGADFILEATG 276

>3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima} Length = 404

 Score = 77.4 bits (191), Expect = 2e-16
 Identities = 52/230 (22%), Positives = 81/230 (35%), Gaps = 48/230 (20%)

Query: 52  SDLLLYNGSGDAKPT------LPLVPGFEFSGTVIEVADTKSSSTEEDDEEDVLQVGDKV 105
           SD+ +     +           P+  G EFSG V+E                  ++G+ V
Sbjct: 70  SDVHMAQTDEEGYILYPGLTGFPVTLGHEFSGVVVEAG----PEAINRRTNKRFEIGEPV 125

Query: 106 LA--------------------LNKELL----HG-FSDQCVVHTNDVFKIPE-------K 133
            A                     N   L     G F++   V     + + E        
Sbjct: 126 CAEEMLWCGHCRPCAEGFPNHCENLNELGFNVDGAFAEYVKVDAKYAWSLRELEGVYEGD 185

Query: 134 MTFEHAASLADSYSTA-QIVFSRHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKA-KVI 191
             F   + L +  S A   V  R   ++    V++   G  +GLAAV +  K   A KVI
Sbjct: 186 RLFLAGS-LVEPTSVAYNAVIVRGGGIRPGDNVVILGGGP-IGLAAVAIL-KHAGASKVI 242

Query: 192 GVCNSEDKTDLIRQKGAWAALTFTNEKSLVNKVLEVSGGKYANVVFEAVG 241
               SE + +L ++ GA   +  T E + V  VL+ + G  A +  EA G
Sbjct: 243 LSEPSEVRRNLAKELGADHVIDPTKE-NFVEAVLDYTNGLGAKLFLEATG 291

>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A* Length = 370

 Score = 76.9 bits (190), Expect = 3e-16
 Identities = 46/221 (20%), Positives = 75/221 (33%), Gaps = 51/221 (23%)

Query: 52  SDLLLYNGSGDAKPTLPLVPGFEFSGTVIEVADTKSSSTEEDDEEDV--LQVGDKV---- 105
           +D  L +G   + P  P+  G EF G V+E                V  +  G ++    
Sbjct: 62  TDRHLLHGEFPSTP--PVTLGHEFCGIVVEAG------------SAVRDIAPGARITGDP 107

Query: 106 ----------------LALNKELL----HG-FSDQCVVHTNDVFKIPEKMTFEHAASLAD 144
                           L  N   +     G F++  +V     F+IP  +   H A   +
Sbjct: 108 NISCGRCPQCQAGRVNLCRNLRAIGIHRDGGFAEYVLVPRKQAFEIPLTLDPVHGA-FCE 166

Query: 145 SYSTA-QIVFSRHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKA-KVIGVCNSEDKTDL 202
             +     V    + +K   TV +    G +GL  V +A ++  A  VI       K  L
Sbjct: 167 PLACCLHGV--DLSGIKAGSTVAILGG-GVIGLLTVQLA-RLAGATTVILSTRQATKRRL 222

Query: 203 IRQKGAWAALTFTNEKSLVNKVLEVSG--GKYANVVFEAVG 241
             + GA A +   +   +V  +    G      +VV E  G
Sbjct: 223 AEEVGATATVD-PSAGDVVEAIAGPVGLVPGGVDVVIECAG 262

>4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli} Length = 346

 Score = 76.5 bits (189), Expect = 3e-16
 Identities = 46/219 (21%), Positives = 73/219 (33%), Gaps = 49/219 (22%)

Query: 52  SDLLLYNGSGDAKPTLPLVPGFEFSGTVIEVADTKSSSTEEDDEEDV--LQVGDKV---- 105
           SDL     +G      P+  G EFSG +  V               V  L  GD V    
Sbjct: 40  SDLPRIFKNGAHYY--PITLGHEFSGYIDAVG------------SGVDDLHPGDAVACVP 85

Query: 106 ----------------LALNKELL----HG-FSDQCVVHTNDVFKIPEKMTFEHAASLAD 144
                                + +     G F++  VV   +VF +P  M  E  A   +
Sbjct: 86  LLPCFTCPECLKGFYSQCAKYDFIGSRRDGGFAEYIVVKRKNVFALPTDMPIEDGA-FIE 144

Query: 145 SYSTA-QIVFSRHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKA-KVIGVCNSEDKTDL 202
             +          A+  E + V++  A G +GL A+  A     A  V  +  S +K  L
Sbjct: 145 PITVGLHAF--HLAQGCENKNVIIIGA-GTIGLLAIQCA-VALGAKSVTAIDISSEKLAL 200

Query: 203 IRQKGAWAALTFTNEKSLVNKVLEVSGGKYANVVFEAVG 241
            +  GA      ++E S       +   ++  ++ E  G
Sbjct: 201 AKSFGAMQTFN-SSEMSAPQMQSVLRELRFNQLILETAG 238

>1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1 Length = 198

 Score = 71.8 bits (177), Expect = 3e-15
 Identities = 31/117 (26%), Positives = 60/117 (51%), Gaps = 2/117 (1%)

Query: 127 VFKIPEKMTFEHAASLADSYSTAQIVFSRHAKLKEKQTVLVTAAGGGLGLAAVDMATKIY 186
           V  IP+ +    AA+   +Y TA        +L   + VL+ +A GG+G+AAV +A K+ 
Sbjct: 4   VVPIPDTLADNEAATFGVAYLTAWHSLCEVGRLSPGERVLIHSATGGVGMAAVSIA-KMI 62

Query: 187 KAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNKVLEVSGGKYANVVFEAVGGE 243
            A++     S+ K +++ + G    +  +      +++LE++ G   +VV  ++ GE
Sbjct: 63  GARIYTTAGSDAKREMLSRLGV-EYVGDSRSVDFADEILELTDGYGVDVVLNSLAGE 118

>4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli} Length = 363

 Score = 73.9 bits (182), Expect = 3e-15
 Identities = 38/194 (19%), Positives = 71/194 (36%), Gaps = 25/194 (12%)

Query: 60  SGDAKP-TLPLVPGFEFSGTVIEVADTKSSSTEEDDEEDV--LQVGDKVLALNKELLHG- 115
                  T   V G++ +G V  V              DV   + GD+V      +  G 
Sbjct: 73  RSTPPDGTDWKVIGYDAAGIVSAVG------------PDVTLFRPGDEVFYAGSIIRPGT 120

Query: 116 FSDQCVVHTNDVFKIPEKMTFEHAASLADSYSTA-QIVFSRHAKLKEK-----QTVLVTA 169
            ++  +V    V + P+ + +  AA+L  +  TA +  F R   + +        +L+  
Sbjct: 121 NAEFHLVDERIVGRKPKTLDWAEAAALPLTSITAWEAFFDR-LDVNKPVPGAAPAILIVG 179

Query: 170 AGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNKVLEVSG 229
             GG+G  AV +A +     VI   +  +  + ++  GA   +  +    L  +V  +  
Sbjct: 180 GAGGVGSIAVQIARQRTDLTVIATASRPETQEWVKSLGAHHVIDHSKP--LAAEVAALGL 237

Query: 230 GKYANVVFEAVGGE 243
           G  A V       +
Sbjct: 238 GAPAFVFSTTHTDK 251

>3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis} Length = 315

 Score = 73.4 bits (181), Expect = 4e-15
 Identities = 37/193 (19%), Positives = 70/193 (36%), Gaps = 30/193 (15%)

Query: 61  GDAKPTLPLVPGFEFSGTVIEVADTKSSSTEEDDEEDV--LQVGDKVLALNKELLHG-FS 117
                +   VPG + +G +++V               V    +G +V        HG F+
Sbjct: 52  NPINWSNGHVPGVDGAGVIVKVG------------AKVDSKMLGRRVAYHTSLKRHGSFA 99

Query: 118 DQCVVHTNDVFKIPEKMTFEHAASLADSYSTAQIVFSRHAKLKEKQTVLVTAAGGGLGLA 177
           +  V++T+ V  +P+ ++FE AA+L     TA   F     L +++ VL+    G +   
Sbjct: 100 EFTVLNTDRVMTLPDNLSFERAAALPCPLLTAWQAF-EKIPLTKQREVLIVGF-GAVNNL 157

Query: 178 AVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNKVLEVSGGKYANVVF 237
              M        V  V  +     L  ++G      +     +  K            +F
Sbjct: 158 LTQML-NNAGYVVDLVS-ASLSQALAAKRG--VRHLYREPSQVTQKY---------FAIF 204

Query: 238 EAVGGEDKTDLIR 250
           +AV  ++   L+ 
Sbjct: 205 DAVNSQNAAALVP 217

>3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus} Length = 346

 Score = 73.0 bits (180), Expect = 6e-15
 Identities = 42/192 (21%), Positives = 72/192 (37%), Gaps = 25/192 (13%)

Query: 65  PTLPLVPGFEFSGTVIEVADTKSSSTEEDDEEDV--LQVGDKVLALNKELLHG-FSDQCV 121
              P V GF+  G V  V              +V     GD V        +G  ++  +
Sbjct: 57  SKAPRVLGFDAIGVVESVG------------NEVTMFNQGDIVYYSGSPDQNGSNAEYQL 104

Query: 122 VHTNDVFKIPEKMTFEHAASLADSYSTA-QIVFSR-----HAKLKEKQTVLVTAAGGGLG 175
           ++   V K P+ ++ E A SL  +  TA + +F       +    E +T+L+    GG+G
Sbjct: 105 INERLVAKAPKNISAEQAVSLPLTGITAYETLFDVFGISRNRNENEGKTLLIINGAGGVG 164

Query: 176 LAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNKVLEVSGGKYANV 235
             A  +A K Y  +VI   +  +  +  ++ GA   L       L+N+          + 
Sbjct: 165 SIATQIA-KAYGLRVITTASRNETIEWTKKMGADIVLNHKES--LLNQFKTQGIELV-DY 220

Query: 236 VFEAVGGEDKTD 247
           VF     +   D
Sbjct: 221 VFCTFNTDMYYD 232

>2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A* Length = 348

 Score = 73.0 bits (180), Expect = 7e-15
 Identities = 50/223 (22%), Positives = 90/223 (40%), Gaps = 54/223 (24%)

Query: 52  SDLLLYNG--SGDAKPTLPLVPGFEFSGTVIEVADTKSSSTEEDDEEDV--LQVGDKV-- 105
           +DL +Y       ++   P + G E +G V+E+               V  ++VGD V  
Sbjct: 44  TDLHIYEWNEWAQSRIKPPQIMGHEVAGEVVEIG------------PGVEGIEVGDYVSV 91

Query: 106 ------------------LALNKELL----HG-FSDQCVVHTNDVFKIPEKMTFEHAASL 142
                             +  N ++      G F++  VV   +++K P+ +  E+A  L
Sbjct: 92  ETHIVCGKCYACRRGQYHVCQNTKIFGVDTDGVFAEYAVVPAQNIWKNPKSIPPEYAT-L 150

Query: 143 ADSYSTAQIVFSRHAKLKEK---QTVLVTAAGGGLGLAAVDMATKIYKA-KVIGVCNSED 198
            +    A         L      ++VL+T A G LGL  + +A K   A  VI    S+ 
Sbjct: 151 QEPLGNAV-----DTVLAGPISGKSVLITGA-GPLGLLGIAVA-KASGAYPVIVSEPSDF 203

Query: 199 KTDLIRQKGAWAALTFTNEKSLVNKVLEVSGGKYANVVFEAVG 241
           + +L ++ GA   +    E  +V +V++++ G   +V  E  G
Sbjct: 204 RRELAKKVGADYVINPFEE-DVVKEVMDITDGNGVDVFLEFSG 245

>2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae} Length = 347

 Score = 72.2 bits (178), Expect = 1e-14
 Identities = 49/213 (23%), Positives = 76/213 (35%), Gaps = 54/213 (25%)

Query: 52  SDLLLYNGSGDAKPTLPLVPGFEFSGTVIEVADTKSSSTEEDDEEDV--LQVGDKV---- 105
           +DL  ++G       LPLV G E +G V+ +             E+V   ++GD      
Sbjct: 45  TDLHAWHGDWPLPVKLPLVGGHEGAGVVVGMG------------ENVKGWKIGDYAGIKW 92

Query: 106 -----------------LALNKELLH-----GFSDQCVVHTNDVFKIPEKMTFEHAASLA 143
                               + +L        F             IP+       A + 
Sbjct: 93  LNGSCMACEYCELGNESNCPHADLSGYTHDGSFQQYATADAVQAAHIPQGTDLAQVAPI- 151

Query: 144 DSYSTAQI-VFS--RHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKA---KVIGVCNSE 197
                A I V+   + A L     V ++ A GGLG     +A +  KA   +V+G+   E
Sbjct: 152 ---LCAGITVYKALKSANLMAGHWVAISGAAGGLG----SLAVQYAKAMGYRVLGIDGGE 204

Query: 198 DKTDLIRQKGAWAALTFTNEKSLVNKVLEVSGG 230
            K +L R  G    + FT EK +V  VL+ + G
Sbjct: 205 GKEELFRSIGGEVFIDFTKEKDIVGAVLKATDG 237

>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1 Length = 352

 Score = 71.5 bits (176), Expect = 2e-14
 Identities = 56/228 (24%), Positives = 85/228 (37%), Gaps = 55/228 (24%)

Query: 52  SDLLLYN--GSGDAKPTLPLVPGFEFSGTVIEVADTKSSSTEEDDEEDV--LQVGDKVLA 107
           SD+  Y      D     P+V G E SGTV++V             ++V  L+ GD+V A
Sbjct: 43  SDVHYYEHGRIADFIVKDPMVIGHEASGTVVKVG------------KNVKHLKKGDRV-A 89

Query: 108 LNKELLHGFSDQC--------------------------VVHTND-VFKIPEKMTFEHAA 140
           +   +       C                           VH  D   K+P+ ++ E  A
Sbjct: 90  VEPGVPCRRCQFCKEGKYNLCPDLTFCATPPDDGNLARYYVHAADFCHKLPDNVSLEEGA 149

Query: 141 SLADSYSTA-QIVFSRHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDK 199
            L +  S        R A ++   TVLV  A G +GL +V  A K Y A V+    S  +
Sbjct: 150 -LLEPLSVGVHAC--RRAGVQLGTTVLVIGA-GPIGLVSVLAA-KAYGAFVVCTARSPRR 204

Query: 200 TDLIRQKGAWAALTF----TNEKSLVNKVLEVSGGKYANVVFEAVGGE 243
            ++ +  GA   L        E S++ ++    G    NV  +  G E
Sbjct: 205 LEVAKNCGADVTLVVDPAKEEESSIIERIRSAIGDL-PNVTIDCSGNE 251

>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A* Length = 2512

 Score = 72.6 bits (178), Expect = 3e-14
 Identities = 31/149 (20%), Positives = 64/149 (42%), Gaps = 6/149 (4%)

Query: 98   VLQVGDKVLALNKELLHGFSDQCVVHTNDVFKIPEKMTFEHAASLADSYSTAQIVFSRHA 157
                G +V+ +      G +   ++  +  +++P   T E AAS+   Y+TA        
Sbjct: 1606 RDASGRRVMGMVPA--EGLATSVLLLQHATWEVPSTWTLEEAASVPIVYTTAYYSLVVRG 1663

Query: 158  KLKEKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGA-WAALTFTN 216
            +++  ++VL+ +  GG+G AA+ +A      +V     S +K   ++ +        F N
Sbjct: 1664 RMQPGESVLIHSGSGGVGQAAIAIALS-RGCRVFTTVGSAEKRAYLQARFPQLDETCFAN 1722

Query: 217  EKSL--VNKVLEVSGGKYANVVFEAVGGE 243
             +       VL  + GK  ++V  ++  E
Sbjct: 1723 SRDTSFEQHVLRHTAGKGVDLVLNSLAEE 1751

>2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A* Length = 366

 Score = 71.3 bits (175), Expect = 3e-14
 Identities = 36/233 (15%), Positives = 65/233 (27%), Gaps = 61/233 (26%)

Query: 52  SDLLLYNG----SGDAKPTLPLVPGFEFSGTVIEVADTKSSSTEEDDEEDVLQVGDKV-- 105
           +D  + NG    S   K    LV G E  G V E                    GD V  
Sbjct: 41  ADREIVNGKLTLSTLPKGKDFLVLGHEAIGVVEESYHG-------------FSQGDLVMP 87

Query: 106 ------------------LALNKEL-------LHG-FSDQCVVHTNDVFKIPEKMTFE-- 137
                                  E        + G   +        + KIP+ +     
Sbjct: 88  VNRRGCGICRNCLVGRPDFCETGEFGEAGIHKMDGFMREWWYDDPKYLVKIPKSIEDIGI 147

Query: 138 ---------HAASLADSYSTAQIVFSRHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKA 188
                     +            V++        + VLV    G +G+    +  + Y  
Sbjct: 148 LAQPLADIEKSIEEILEVQKRVPVWTCDDGTLNCRKVLVVGT-GPIGVLFTLLF-RTYGL 205

Query: 189 KVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNKVLEVSGGKYANVVFEAVG 241
           +V  + N  + T++ +         + N  +  +K+ +  G    +V+ +A G
Sbjct: 206 EVW-MANRREPTEVEQTVIEETKTNYYNSSNGYDKLKDSVGK--FDVIIDATG 255

>3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A Length = 352

 Score = 66.4 bits (163), Expect = 1e-12
 Identities = 46/229 (20%), Positives = 84/229 (36%), Gaps = 56/229 (24%)

Query: 52  SDL-LLYNGSGDAKPTLPLVPGFEFSGTVIEVADTKSSSTEEDDEEDV--LQVGDKVLA- 107
           SD+  ++ G+   +    ++ G E  G V+EV              +V   + GD+V+  
Sbjct: 39  SDIHTVFEGAIGERH--NMILGHEAVGEVVEVGS------------EVKDFKPGDRVVVP 84

Query: 108 ------LNKELLHGFSDQCV-------------------VHTND----VFKIPEKMTFEH 138
                    E+  G+                         H ND    +  +P+++  E 
Sbjct: 85  AITPDWRTSEVQRGYHQHSGGMLAGWKFSNVKDGVFGEFFHVNDADMNLAHLPKEIPLEA 144

Query: 139 AASLADSYSTAQIVFS--RHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKA-KVIGVCN 195
           A  + D  +T    F     A +K   TV V   G  +GL +V        A ++  V +
Sbjct: 145 AVMIPDMMTTG---FHGAELANIKLGDTVCVIGIGP-VGLMSV-AGANHLGAGRIFAVGS 199

Query: 196 SEDKTDLIRQKGAWAALTFTNEKSLVNKVLEVSGGKYANVVFEAVGGED 244
            +   D+  + GA   + + N   +V ++L+ + GK  + V  A G   
Sbjct: 200 RKHCCDIALEYGATDIINYKNG-DIVEQILKATDGKGVDKVVIAGGDVH 247

>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A Length = 356

 Score = 66.5 bits (163), Expect = 1e-12
 Identities = 51/226 (22%), Positives = 79/226 (34%), Gaps = 52/226 (23%)

Query: 52  SDLLLYN--GSGDAKPTLPLVPGFEFSGTVIEVADTKSSSTEEDDEEDV--LQVGDKVLA 107
           SD+  +     G+     P+V G E SGTV +V               V  L+ GD+V A
Sbjct: 46  SDVHYWEYGRIGNFIVKKPMVLGHEASGTVEKVG------------SSVKHLKPGDRV-A 92

Query: 108 LNKELLHGFSDQC--------------------------VVHTND-VFKIPEKMTFEHAA 140
           +         + C                            H     +K+P+ +TFE  A
Sbjct: 93  IEPGAPRENDEFCKMGRYNLSPSIFFCATPPDDGNLCRFYKHNAAFCYKLPDNVTFEEGA 152

Query: 141 SLADSYSTA-QIVFSRHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDK 199
            L +  S        R   +     VLV  A G +G+  + +A  +  A+V+    S  +
Sbjct: 153 -LIEPLSVGIHAC--RRGGVTLGHKVLVCGA-GPIGMVTLLVAKAMGAAQVVVTDLSATR 208

Query: 200 TDLIRQKGAWAALTFTNE--KSLVNKVLEVSGGKYANVVFEAVGGE 243
               ++ GA   L  + E  + +  KV    G K   V  E  G E
Sbjct: 209 LSKAKEIGADLVLQISKESPQEIARKVEGQLGCK-PEVTIECTGAE 253

>2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A* Length = 357

 Score = 65.8 bits (161), Expect = 2e-12
 Identities = 40/232 (17%), Positives = 67/232 (28%), Gaps = 62/232 (26%)

Query: 52  SDLLLYNGS--GDAKPTLPLVPGFEFSGTVIEVADTKSSSTEEDDEEDVLQVGDKV---- 105
           +D  +  G   G  +    LV G E  G V++  DT+            L+ GD V    
Sbjct: 40  TDHEVIAGGHGGFPEGEDHLVLGHEAVGVVVDPNDTE------------LEEGDIVVPTV 87

Query: 106 -------------------------LALNKELLHG-FSDQCVVHTNDVFKIPEKMTFEHA 139
                                            HG  S+        + +IP        
Sbjct: 88  RRPPASGTNEYFERDQPDMAPDGMYFERGIVGAHGYMSEFFTSPEKYLVRIPRSQA--EL 145

Query: 140 ASLADSYSTA-----QIVFSRHAKLKEKQTVLVTAAGG-GLGLAAVDMATKIYKAKVIGV 193
             L +  S           SR A   +  +  V   G  GL   A+          +  +
Sbjct: 146 GFLIEPISITEKALEHAYASRSAFDWDPSSAFVLGNGSLGLLTLAMLKVDDKGYENLYCL 205

Query: 194 CN---SEDKTDLIRQKGAWAALTFTN-EKSLVNKVLEVSGGKYANVVFEAVG 241
                 +   D+I +  A    T+ +  ++ V  V +V      + ++EA G
Sbjct: 206 GRRDRPDPTIDIIEELDA----TYVDSRQTPVEDVPDVYEQ--MDFIYEATG 251

>2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A* Length = 343

 Score = 64.5 bits (158), Expect = 5e-12
 Identities = 50/221 (22%), Positives = 80/221 (36%), Gaps = 51/221 (23%)

Query: 52  SDLLLYNGS--GDAKPTLPLVPGFEFSGTVIEVADTKSSSTEEDDEEDV--LQVGDKV-- 105
           +DL ++        +   PLV G EFSG V  V               V   QVGD V  
Sbjct: 40  TDLHIWKWDAWARGRIRPPLVTGHEFSGVVEAVG------------PGVRRPQVGDHVSL 87

Query: 106 ------------------LALNKELL----HG-FSDQCVVHTNDVFKIPEKMTFEHAASL 142
                             + LN ++L     G F++  VV   + +  P+ + FE AA +
Sbjct: 88  ESHIVCHACPACRTGNYHVCLNTQILGVDRDGGFAEYVVVPAENAWVNPKDLPFEVAA-I 146

Query: 143 ADSYSTA-QIVFSRHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKA-KVIGVCNSEDKT 200
            + +  A   V          ++VL+T A G +GL A  +  +   A  ++    +  + 
Sbjct: 147 LEPFGNAVHTV--YAGSGVSGKSVLITGA-GPIGLMAAMVV-RASGAGPILVSDPNPYRL 202

Query: 201 DLIRQKGAWAALTFTNEKSLVNKVLEVSGGKYANVVFEAVG 241
              R            E+ L+  V  V+G     V+ E  G
Sbjct: 203 AFARPYADRLVN--PLEEDLLEVVRRVTGSG-VEVLLEFSG 240

>1tt7_A YHFP; alcohol dehydrogenase, Zn-dependent, NAD, structural genomics, protein structure initiative, PSI; 2.70A {Bacillus subtilis} SCOP: b.35.1.2 c.2.1.1 PDB: 1y9e_A* Length = 330

 Score = 62.3 bits (152), Expect = 2e-11
 Identities = 52/210 (24%), Positives = 88/210 (41%), Gaps = 23/210 (10%)

Query: 49  INSSDLLLYNGSGDAKPTLPLVPGFEFSGTVIEVADTKSSSTEEDDEEDVLQVGDKVLAL 108
           IN  D L     G+     PL+ G + +GTV+   D +               GD+V+A 
Sbjct: 43  INYKDGLAGKAGGNIVREYPLILGIDAAGTVVSSNDPR------------FAEGDEVIAT 90

Query: 109 NKEL--LH--GFSDQCVVHTNDVFKIPEKMTFEHAASLADSYSTAQIVFSR---HAKLKE 161
           + EL      G S+   V  + +  +P+ ++ + A     +  TA +   R   +    E
Sbjct: 91  SYELGVSRDGGLSEYASVPGDWLVPLPQNLSLKEAMVYGTAGFTAALSVHRLEQNGLSPE 150

Query: 162 KQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLV 221
           K +VLVT A GG+G  AV M  K     V+    + +  D ++Q GA   ++  +     
Sbjct: 151 KGSVLVTGATGGVGGIAVSMLNKR-GYDVVASTGNREAADYLKQLGASEVISREDVYDGT 209

Query: 222 NKVLEVSGGKYANVVFEAVGGEDKTDLIRQ 251
            K L     ++   V + VGG+    L+ +
Sbjct: 210 LKALS--KQQWQGAV-DPVGGKQLASLLSK 236

>1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A Length = 339

 Score = 62.6 bits (153), Expect = 2e-11
 Identities = 53/210 (25%), Positives = 82/210 (39%), Gaps = 50/210 (23%)

Query: 52  SDLLLYNGSGDAKPTLPLVPGFEFSGTVIEVADTKSSSTEEDDEEDV--LQVGDKV---- 105
           +DL   +G    KP LPL+PG E  G V EV               V  L+VGD+V    
Sbjct: 40  TDLHAAHGDWPVKPKLPLIPGHEGVGIVEEVG------------PGVTHLKVGDRVGIPW 87

Query: 106 -----------------LALNKELLH-----GFSDQCVVHTNDVFKIPEKMTFEHAASLA 143
                            L  +++        G+++ C    + V KIP+ ++FE AA + 
Sbjct: 88  LYSACGHCDYCLSGQETLCEHQKNAGYSVDGGYAEYCRAAADYVVKIPDNLSFEEAAPIF 147

Query: 144 DSYSTAQI-VFS--RHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKT 200
                A +  +   +    K  + V +    GGLG  AV  A K     V+ V   ++K 
Sbjct: 148 ----CAGVTTYKALKVTGAKPGEWVAI-YGIGGLGHVAVQYA-KAMGLNVVAVDIGDEKL 201

Query: 201 DLIRQKGAWAALTFTNEKSLVNKVLEVSGG 230
           +L ++ GA   +    E      + E  GG
Sbjct: 202 ELAKELGADLVVNPLKED-AAKFMKEKVGG 230

>3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa} Length = 363

 Score = 62.6 bits (153), Expect = 2e-11
 Identities = 44/229 (19%), Positives = 71/229 (31%), Gaps = 57/229 (24%)

Query: 52  SDLLLYN--GSGDAKPTLPLVPGFEFSGTVIEVADTKSSSTEEDDEEDV--LQVGDKV-- 105
           SD+  +     G        V G E +G VI V               V  ++VGD+V  
Sbjct: 55  SDVHFWKHGCIGPMIVECDHVLGHESAGEVIAVH------------PSVKSIKVGDRVAI 102

Query: 106 -------------------------LALNKELLHG-FSDQCVVHTNDVFKIPEKMTFEHA 139
                                    L+     + G              KI   M++E+ 
Sbjct: 103 EPQVICNACEPCLTGRYNGCERVDFLSTPP--VPGLLRRYVNHPAVWCHKIGN-MSYENG 159

Query: 140 ASLADSYSTA-QIVFSRHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKA-KVIGVCNSE 197
           A + +  S A   +  + A ++    VL+  AG  +GL  +  A K   A  ++     E
Sbjct: 160 A-MLEPLSVALAGL--QRAGVRLGDPVLICGAGP-IGLITMLCA-KAAGACPLVITDIDE 214

Query: 198 DKTDLIRQKGAWAALTFTNEKS---LVNKVLEVSGGKYANVVFEAVGGE 243
            +    ++             S      K++E  GG    V  E  G E
Sbjct: 215 GRLKFAKEICPEVVTHKVERLSAEESAKKIVESFGGIEPAVALECTGVE 263

>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A* Length = 340

 Score = 62.2 bits (152), Expect = 3e-11
 Identities = 47/214 (21%), Positives = 78/214 (36%), Gaps = 58/214 (27%)

Query: 52  SDLLLYNGSGDAKPTLPLVPGFEFSGTVIEVADTKSSSTEEDDEEDV--LQVGDKV---- 105
           +DL   +G    KPTLP +PG E  G V  V               V  ++ GD+V    
Sbjct: 42  TDLHAADGDWPVKPTLPFIPGHEGVGYVSAVG------------SGVSRVKEGDRVGVPW 89

Query: 106 -----------------LALNKELLH-----GFSDQCVVHTNDVFKIPEKMTFEHAASL- 142
                            L   ++        G+ +  V   N V  +P+K+ F   A + 
Sbjct: 90  LYSACGYCEHCLQGWETLCEKQQNTGYSVNGGYGEYVVADPNYVGLLPDKVGFVEIAPIL 149

Query: 143 -ADSYSTAQIVFS--RHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKA---KVIGVCNS 196
            A        V+   +    +  Q V++ +  GGLG     +A +  +A   +V  V   
Sbjct: 150 CAGV-----TVYKGLKVTDTRPGQWVVI-SGIGGLG----HVAVQYARAMGLRVAAVDID 199

Query: 197 EDKTDLIRQKGAWAALTFTNEKSLVNKVLEVSGG 230
           + K +L R+ GA  A+   +       + +  GG
Sbjct: 200 DAKLNLARRLGAEVAVNARDTD-PAAWLQKEIGG 232

>1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1 Length = 398

 Score = 60.4 bits (147), Expect = 2e-10
 Identities = 58/281 (20%), Positives = 91/281 (32%), Gaps = 74/281 (26%)

Query: 16  LLYNGSGD------AKPTLPLVPGFEFSGTIIEKKMMTRINSSDLLLYNGSGDAKPTLPL 69
           ++Y GSG         P +    G +    +I K + T I  SD  +  G   A+    L
Sbjct: 6   VVYLGSGKVEVQKIDYPKMQDPRGKKIEHGVILKVVSTNICGSDQHMVRGRTTAQV--GL 63

Query: 70  VPGFEFSGTVIEVADTKSSSTEEDDEEDV--LQVGDKVLA---------LNKELLHGFSD 118
           V G E +G VIE               DV  LQ+GD V            + +     + 
Sbjct: 64  VLGHEITGEVIEKGR------------DVENLQIGDLVSVPFNVACGRCRSCK--EMHTG 109

Query: 119 QCV-------------VHTNDV-----------------FKIPEKMTFEHAAS----LAD 144
            C+             V   D                   K+P++            L+D
Sbjct: 110 VCLTVNPARAGGAYGYVDMGDWTGGQAEYVLVPYADFNLLKLPDRDKAMEKIRDLTCLSD 169

Query: 145 SYSTA-QIVFSRHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKAK-VIGVCNSEDKTDL 202
              T         A +    TV V  AG  +GLAA   A ++  A  VI    +  +   
Sbjct: 170 ILPTGYHGA--VTAGVGPGSTVYVAGAGP-VGLAAAASA-RLLGAAVVIVGDLNPARLAH 225

Query: 203 IRQKGAWAALTFTNEKSLVNKVLEVSGGKYANVVFEAVGGE 243
            + +G       + +  L  ++  + G    +   +AVG E
Sbjct: 226 AKAQGF-EIADLSLDTPLHEQIAALLGEPEVDCAVDAVGFE 265

>1xa0_A Putative NADPH dependent oxidoreductases; structural genomics, protein structure initiative, MCSG; HET: DTY; 2.80A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 Length = 328

 Score = 59.6 bits (145), Expect = 2e-10
 Identities = 50/210 (23%), Positives = 86/210 (40%), Gaps = 23/210 (10%)

Query: 49  INSSDLLLYNGSGDAKPTLPLVPGFEFSGTVIEVADTKSSSTEEDDEEDVLQVGDKVLAL 108
           +N  D L     G    T P VPG + +G V+     +             + GD+V+A 
Sbjct: 42  VNYKDGLASIPDGKIVKTYPFVPGIDLAGVVVSSQHPR------------FREGDEVIAT 89

Query: 109 NKEL--LH--GFSDQCVVHTNDVFKIPEKMTFEHAASLADSYSTAQIVFSRHAKLK---E 161
             E+   H  G+S+   +H   +  +P+ +T + A ++  +  TA +   R  +     E
Sbjct: 90  GYEIGVTHFGGYSEYARLHGEWLVPLPKGLTLKEAMAIGTAGFTAALSIHRLEEHGLTPE 149

Query: 162 KQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLV 221
           +  VLVT A GG+G  AV M        V        + D +R  GA   L   +  +  
Sbjct: 150 RGPVLVTGATGGVGSLAVSM-LAKRGYTVEASTGKAAEHDYLRVLGAKEVLAREDVMAER 208

Query: 222 NKVLEVSGGKYANVVFEAVGGEDKTDLIRQ 251
            + L+    ++A  V + VGG     ++ +
Sbjct: 209 IRPLD--KQRWAAAV-DPVGGRTLATVLSR 235

>3nx4_A Putative oxidoreductase; csgid, structural genomics, center for struc genomics of infectious diseases, PSI, protein structure INI; HET: MSE NAP; 1.90A {Salmonella enterica subsp} PDB: 1o89_A 1o8c_A* Length = 324

 Score = 58.9 bits (143), Expect = 3e-10
 Identities = 45/213 (21%), Positives = 80/213 (37%), Gaps = 31/213 (14%)

Query: 49  INSSDLLLYNGSGDAKPTLPLVPGFEFSGTVIEVADTKSSSTEEDDEEDVLQVGDKVLAL 108
           +N  D L   G G      P++PG +F+GTV    D +               G +VL  
Sbjct: 39  LNYKDALAITGKGKIIRHFPMIPGIDFAGTVHASEDPR------------FHAGQEVLLT 86

Query: 109 NKEL--LH--GFSDQCVVHTNDVFKIPEKMTFEHAASLADSYSTAQI---VFSRHAKLKE 161
              +   H  G +++  V  + +  +P  ++  +A  +  +  TA +            +
Sbjct: 87  GWGVGENHWGGLAERARVKGDWLVALPAGLSSRNAMIIGTAGFTAMLCVMALEDAGIRPQ 146

Query: 162 KQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAAL---TFTNEK 218
              V+VT A GG+G  AV +  K+   +V  V   E     ++  GA   L    F   +
Sbjct: 147 DGEVVVTGASGGVGSTAVALLHKL-GYQVAAVSGRESTHGYLKSLGANRILSRDEFAESR 205

Query: 219 SLVNKVLEVSGGKYANVVFEAVGGEDKTDLIRQ 251
            L           +A  + + VG +    ++ Q
Sbjct: 206 PL-------EKQLWAGAI-DTVGDKVLAKVLAQ 230

>2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida} Length = 398

 Score = 58.8 bits (143), Expect = 4e-10
 Identities = 53/300 (17%), Positives = 88/300 (29%), Gaps = 78/300 (26%)

Query: 16  LLYNGSGD------AKPTLPLVPGFEFSGTIIEKKMMTRINSSDLLLYNGSGDAKPTLPL 69
           ++Y+G+ D        P L      +    +I K + T I  SD  +Y G          
Sbjct: 6   VVYHGTRDLRVETVPYPKL-EHNNRKLEHAVILKVVSTNICGSDQHIYRGRFIVPK--GH 62

Query: 70  VPGFEFSGTVIEVADTKSSSTEEDDEEDV--LQVGDKVLA---------LNKELLHGFSD 118
           V G E +G V+E               DV  + +GD V            N +     SD
Sbjct: 63  VLGHEITGEVVEKGS------------DVELMDIGDLVSVPFNVACGRCRNCK--EARSD 108

Query: 119 QCVVHTN------------------------------DV--FKIPEKMT----FEHAASL 142
            C  +                                D    K  +K       +    +
Sbjct: 109 VCE-NNLVNPDADLGAFGFDLKGWSGGQAEYVLVPYADYMLLKFGDKEQAMEKIKDLTLI 167

Query: 143 ADSYSTA-QIVFSRHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKAK-VIGVCNSEDKT 200
           +D   T         A +K    V +  AG  +G  A   A ++  A  VI    + ++ 
Sbjct: 168 SDILPTGFHGC--VSAGVKPGSHVYIAGAGP-VGRCAAAGA-RLLGAACVIVGDQNPERL 223

Query: 201 DLIRQKGAWAALTFTNEKSLVNKVLEVSGGKYANVVFEAVGGEDKTDLIRQKGAWAALTF 260
            L+   G    +   N   L +++ ++ G    +   +AVG E                 
Sbjct: 224 KLLSDAGF-ETIDLRNSAPLRDQIDQILGKPEVDCGVDAVGFEAHGLGDEANTETPNGAL 282

>1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A* Length = 333

 Score = 57.2 bits (139), Expect = 1e-09
 Identities = 43/173 (24%), Positives = 71/173 (41%), Gaps = 21/173 (12%)

Query: 76  SGTVIEVADTKSSSTEEDDEEDVLQVGDKVLALNKELLHGFSDQCVVHTNDVFKIPEKMT 135
              V  V ++K+S+            G  VLA       G++   +     + K+  +  
Sbjct: 69  GQQVARVVESKNSA---------FPAGSIVLAQ-----SGWTTHFISDGKGLEKLLTEWP 114

Query: 136 FEHAASLADSY-----STAQIVFSRHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKAKV 190
            +   SLA         TA         +K  +TVLV+AA G +G     +A K+   KV
Sbjct: 115 DKLPLSLALGTIGMPGLTAYFGLLEVCGVKGGETVLVSAAAGAVGSVVGQIA-KLKGCKV 173

Query: 191 IGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNKVLEVSGGKYANVVFEAVGGE 243
           +G   S++K   ++Q G  AA  +    SL  + L+ +     +  F+ VGGE
Sbjct: 174 VGAAGSDEKIAYLKQIGFDAAFNYKTVNSL-EEALKKASPDGYDCYFDNVGGE 225

>2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A* Length = 373

 Score = 54.5 bits (132), Expect = 1e-08
 Identities = 56/247 (22%), Positives = 86/247 (34%), Gaps = 80/247 (32%)

Query: 52  SDLLLYNGSGDAKPTLPLVPGFEFSGTVIEVADTKSSSTEEDDEEDV--LQVGDKVLAL- 108
           +D    +G+ D +   P++ G   +G V  V             E V  L+ GD V+ L 
Sbjct: 46  TDAYTLSGA-DPEGCFPVILGHLGAGIVESVG------------EGVTKLKAGDTVIPLY 92

Query: 109 ----------------------------------------NKELLH-----GFSDQCVVH 123
                                                    K +LH      FS+  VV 
Sbjct: 93  IPQCGECKFCLNPKTNLCQKIRVTQGKGLMPDGTSRFTCKGKTILHYMGTSTFSEYTVVA 152

Query: 124 TNDVFKIPEKMTFEHAASLADSYST---AQIVFSRHAKLKEKQTVLVTAAGGGLGLAAVD 180
              V KI      +    L    ST   A +     AKL+      V    GG+GLA + 
Sbjct: 153 DISVAKIDPLAPLDKVCLLGCGISTGYGAAV---NTAKLEPGSVCAVFGL-GGVGLAVI- 207

Query: 181 MATKIYKA-KVIGVCNSEDKTDLIRQKGAWAALT-FTN----EKSLVNKVLEVSGGKYAN 234
           M  K+  A ++IGV  ++DK    ++ GA    T   N     K +   ++E++ G   +
Sbjct: 208 MGCKVAGASRIIGVDINKDKFARAKEFGA----TECINPQDFSKPIQEVLIEMTDGG-VD 262

Query: 235 VVFEAVG 241
             FE +G
Sbjct: 263 YSFECIG 269

>2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ... Length = 374

 Score = 51.1 bits (123), Expect = 1e-07
 Identities = 54/239 (22%), Positives = 84/239 (35%), Gaps = 79/239 (33%)

Query: 60  SGDAKPTLPLVPGFEFSGTVIEVADTKSSSTEEDDEEDV--LQVGDKVLAL--------- 108
           SG     LP++ G E +G V  +             E V  ++ GDKV+ L         
Sbjct: 54  SGTLVTPLPVIAGHEAAGIVESIG------------EGVTTVRPGDKVIPLFTPQCGKCR 101

Query: 109 --------------------------------NKELLH-----GFSDQCVVHTNDVFKIP 131
                                            K + H      FS   VV    V KI 
Sbjct: 102 VCKHPEGNFCLKNDLSMPRGTMQDGTSRFTCRGKPIHHFLGTSTFSQYTVVDEISVAKID 161

Query: 132 EKMTFEHAASLADSYST---AQIVFSRHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKA 188
                E    +   +ST   + +   + AK+ +  T  V    GG+GL+ + M  K   A
Sbjct: 162 AASPLEKVCLIGCGFSTGYGSAV---KVAKVTQGSTCAVFGL-GGVGLSVI-MGCKAAGA 216

Query: 189 -KVIGVCNSEDKTDLIRQKGAWAALT-FTN----EKSLVNKVLEVSGGKYANVVFEAVG 241
            ++IGV  ++DK    ++ GA    T   N    +K +   + E+S G   +  FE +G
Sbjct: 217 ARIIGVDINKDKFAKAKEVGA----TECVNPQDYKKPIQEVLTEMSNGG-VDFSFEVIG 270

>1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1 Length = 374

 Score = 50.7 bits (122), Expect = 2e-07
 Identities = 54/247 (21%), Positives = 80/247 (32%), Gaps = 80/247 (32%)

Query: 52  SDLLLYNGSGDAKPTLPLVPGFEFSGTVIEVADTKSSSTEEDDEEDV--LQVGDKVLAL- 108
           +DL      G  K   P+V G E +G V  V               V   Q G+KV+ L 
Sbjct: 48  TDLYHLFE-GKHKDGFPVVLGHEGAGIVESVG------------PGVTEFQPGEKVIPLF 94

Query: 109 ----------------------------------------NKELLH-----GFSDQCVVH 123
                                                    +++L       FS   VV+
Sbjct: 95  ISQCGECRFCQSPKTNQCVKGWANESPDVMSPKETRFTCKGRKVLQFLGTSTFSQYTVVN 154

Query: 124 TNDVFKIPEKMTFEHAASLADSYST---AQIVFSRHAKLKEKQTVLVTAAGGGLGLAAVD 180
              V KI      +    L    ST   A +     AK++   T  V    G +GLAAV 
Sbjct: 155 QIAVAKIDPSAPLDTVCLLGCGVSTGFGAAV---NTAKVEPGSTCAVFGL-GAVGLAAV- 209

Query: 181 MATKIYKA-KVIGVCNSEDKTDLIRQKGAWAALT-FTN----EKSLVNKVLEVSGGKYAN 234
           M      A ++I V  + DK +  +  GA    T F N     + +   + +++ G   +
Sbjct: 210 MGCHSAGAKRIIAVDLNPDKFEKAKVFGA----TDFVNPNDHSEPISQVLSKMTNGG-VD 264

Query: 235 VVFEAVG 241
              E VG
Sbjct: 265 FSLECVG 271

>1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A* Length = 376

 Score = 49.5 bits (119), Expect = 4e-07
 Identities = 43/247 (17%), Positives = 78/247 (31%), Gaps = 83/247 (33%)

Query: 56  LYNGSGDAKPTLPLVPGFEFSGTVIEVADTKSSSTEEDDEEDV--LQVGDKVLAL----- 108
           +       K   P+V G E +G V  V               V   + GDKV+       
Sbjct: 50  INATDPKKKALFPVVLGHECAGIVESVG------------PGVTNFKPGDKVIPFFAPQC 97

Query: 109 ----------------------------------------NKELLH-----GFSDQCVVH 123
                                                    + + H      FS   VV 
Sbjct: 98  KRCKLCLSPLTNLCGKLRNFKYPTIDQELMEDRTSRFTCKGRSIYHFMGVSSFSQYTVVS 157

Query: 124 TNDVFKIPEKMTFEHAASLADSYST---AQIVFSRHAKLKEKQTVLVTAAGGGLGLAAVD 180
             ++ ++ ++   E    +   +S+   A I     AK+    T  V    G +GL+A+ 
Sbjct: 158 EANLARVDDEANLERVCLIGCGFSSGYGAAI---NTAKVTPGSTCAVFGL-GCVGLSAI- 212

Query: 181 MATKIYKA-KVIGVCNSEDKTDLIRQKGAWAALT-FTN----EKSLVNKVLEVSGGKYAN 234
           +  KI  A ++I +  + +K    +  GA    T   N    +K + + + E++ G   +
Sbjct: 213 IGCKIAGASRIIAIDINGEKFPKAKALGA----TDCLNPRELDKPVQDVITELTAGG-VD 267

Query: 235 VVFEAVG 241
              +  G
Sbjct: 268 YSLDCAG 274

>1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1 Length = 371

 Score = 48.3 bits (116), Expect = 1e-06
 Identities = 33/147 (22%), Positives = 62/147 (42%), Gaps = 16/147 (10%)

Query: 116 FSDQCVVHTNDVFKIPEKMTFEHAASLADSYST---AQIVFSRHAKLKEKQTVLVTAAGG 172
           F+   +   N+  K+ + +  E    L     T   A I      K+    + +   A G
Sbjct: 145 FATYALSRENNTVKVTKDVPIELLGPLGCGIQTGAGACI---NALKVTPASSFVTWGA-G 200

Query: 173 GLGLAAVDMATKIYKA-KVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNKVLEVSGGK 231
            +GL+A+ +A K+  A  +I V   E + +L +Q GA   +  +  +  V  + E++ G 
Sbjct: 201 AVGLSAL-LAAKVCGASIIIAVDIVESRLELAKQLGATHVIN-SKTQDPVAAIKEITDGG 258

Query: 232 YANVVFEAVGGEDKTDLIRQKGAWAAL 258
             N   E+ G     ++++Q     AL
Sbjct: 259 -VNFALESTG---SPEILKQ--GVDAL 279

>2zb4_A Prostaglandin reductase 2; rossmann fold, alternative splicing, cytoplasm, NADP, oxidoreductase; HET: NAP 5OP; 1.63A {Homo sapiens} PDB: 2zb7_A* 2zb8_A* 2w98_A* 2vna_A* 2w4q_A* 1vj1_A 2zb3_A* Length = 357

 Score = 48.0 bits (115), Expect = 2e-06
 Identities = 35/181 (19%), Positives = 71/181 (39%), Gaps = 34/181 (18%)

Query: 76  SGTVIEVADTKSSSTEEDDEEDVLQVGDKVLALNKELLHGFSDQCVVHTNDVFKIPEKMT 135
            G +  + ++K ++         L  GD V +        +  + ++  N + K+  ++ 
Sbjct: 82  GGGIGIIEESKHTN---------LTKGDFVTSFYW----PWQTKVILDGNSLEKVDPQLV 128

Query: 136 FEHAASLADSYS---------TAQIVFSRHAKLKE--KQTVLVTAAGGGLGLAAVDMATK 184
             H      SY          T+ I       +     +T++V+ A G  G  A  +   
Sbjct: 129 DGHL-----SYFLGAIGMPGLTSLIGIQEKGHITAGSNKTMVVSGAAGACGSVAGQIG-H 182

Query: 185 IY-KAKVIGVCNSEDKTDLIRQK-GAWAALTFTNEKSLVNKVLEVSGGKYANVVFEAVGG 242
               ++V+G+C + +K  L+  + G  AA+ +  +   V + L  S     +V F+ VGG
Sbjct: 183 FLGCSRVVGICGTHEKCILLTSELGFDAAINYKKDN--VAEQLRESCPAGVDVYFDNVGG 240

Query: 243 E 243
            
Sbjct: 241 N 241

>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori} Length = 348

 Score = 47.6 bits (114), Expect = 2e-06
 Identities = 44/202 (21%), Positives = 65/202 (32%), Gaps = 69/202 (34%)

Query: 52  SDL-LLYNGSGDAKPTLPLVPGFEFSGTVIEVAD--TKSSSTEEDDEEDVLQVGDKV--- 105
           SD+   Y+   +     P++PG E +G + EV     K             ++GD V   
Sbjct: 44  SDIHSAYSEWKEGI--YPMIPGHEIAGIIKEVGKGVKK------------FKIGDVVGVG 89

Query: 106 -------------------------------LALNKELLHG-FSDQCVVHTNDVFKIPEK 133
                                             + E   G +S+  VV  N V  + + 
Sbjct: 90  CFVNSCKACKPCKEHQEQFCTKVVFTYDCLDSFHDNEPHMGGYSNNIVVDENYVISVDKN 149

Query: 134 MTFEHAASLADSYSTAQI-VFS--RHAKLKEKQTVLVTAAG-GGLGLAAVDMATKIYKA- 188
              E  A L      A I  +S  + +K+ +   V V  AG GGLG     MA K   A 
Sbjct: 150 APLEKVAPLL----CAGITTYSPLKFSKVTKGTKVGV--AGFGGLG----SMAVKYAVAM 199

Query: 189 --KVIGVCNSEDKTDLIRQKGA 208
             +V     +E K       G 
Sbjct: 200 GAEVSVFARNEHKKQDALSMGV 221

>1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A* Length = 366

 Score = 47.6 bits (114), Expect = 2e-06
 Identities = 48/200 (24%), Positives = 71/200 (35%), Gaps = 65/200 (32%)

Query: 52  SDL-LLYNGSGDAKPTLPLVPGFEFSGTVIEVAD--TKSSSTEEDDEEDVLQVGDKV--- 105
           SDL  + N  G +    PLVPG E  G V EV     K            + VGDKV   
Sbjct: 56  SDLHSIKNDWGFSM--YPLVPGHEIVGEVTEVGSKVKK------------VNVGDKVGVG 101

Query: 106 -----------------------------LALNKELLHG-FSDQCVVHTNDVFKIPEKMT 135
                                        +  +  + +G +S+  V +   + + P+ M 
Sbjct: 102 CLVGACHSCESCANDLENYCPKMILTYASIYHDGTITYGGYSNHMVANERYIIRFPDNMP 161

Query: 136 FEHAASLADSYSTAQI-VFS--RHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKA---K 189
            +  A L      A I V+S  ++  L E    +     GGLG     +A K  KA   K
Sbjct: 162 LDGGAPLL----CAGITVYSPLKYFGLDEPGKHIGIVGLGGLG----HVAVKFAKAFGSK 213

Query: 190 VIGVCNSEDK-TDLIRQKGA 208
           V  +  S  K  + ++  GA
Sbjct: 214 VTVISTSPSKKEEALKNFGA 233

>2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A* Length = 345

 Score = 47.6 bits (114), Expect = 2e-06
 Identities = 41/180 (22%), Positives = 65/180 (36%), Gaps = 35/180 (19%)

Query: 76  SGTVIEVADTKSSSTEEDDEEDVLQVGDKVLALNKELLHGFSDQCVVHTND--VFKIPEK 133
              V  + ++              + GD +  +       + +  V+       FKI   
Sbjct: 80  GYGVSRIIESGHPD---------YKKGDLLWGI-----VAWEEYSVITPMTHAHFKIQH- 124

Query: 134 MTFEHAASLADSYS---------TAQIVFSRHAKLKEKQTVLVTAAGGGLGLAAVDMATK 184
                   L  SY          TA   F      KE +TV V+AA G +G     +A K
Sbjct: 125 ----TDVPL--SYYTGLLGMPGMTAYAGFYEVCSPKEGETVYVSAASGAVGQLVGQLA-K 177

Query: 185 IYKAKVIGVCNSEDKTDLIRQK-GAWAALTFTNEKSLVNKVLEVSGGKYANVVFEAVGGE 243
           +    V+G   S++K DL++ K G   A  +  E  L    L+       ++ FE VGG+
Sbjct: 178 MMGCYVVGSAGSKEKVDLLKTKFGFDDAFNYKEESDL-TAALKRCFPNGIDIYFENVGGK 236

>1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A Length = 360

 Score = 46.8 bits (112), Expect = 4e-06
 Identities = 40/201 (19%), Positives = 67/201 (33%), Gaps = 68/201 (33%)

Query: 52  SDL-LLYNGSGDAKPTLPLVPGFEFSGTVIEV---ADTKSSSTEEDDEEDVLQVGDKV-- 105
           SD+       G+    +PLV G E  G V+++   +++             L+VG +V  
Sbjct: 48  SDIHCAAGHWGNM--KMPLVVGHEIVGKVVKLGPKSNSG------------LKVGQRVGV 93

Query: 106 ------------------------------LALNKELLHG-FSDQCVVHTNDVFKIPEKM 134
                                            +  +  G +++   VH + V  IPE +
Sbjct: 94  GAQVFSCLECDRCKNDNEPYCTKFVTTYSQPYEDGYVSQGGYANYVRVHEHFVVPIPENI 153

Query: 135 TFEHAASLADSYSTAQI-VFS--RHAKLKEKQTVLVTAAG-GGLGLAAVDMATKIYKA-- 188
               AA L        + V+S          + V +   G GG+G     M T I KA  
Sbjct: 154 PSHLAAPLL----CGGLTVYSPLVRNGCGPGKKVGI--VGLGGIG----SMGTLISKAMG 203

Query: 189 -KVIGVCNSEDKTDLIRQKGA 208
            +   +  S  K +   + GA
Sbjct: 204 AETYVISRSSRKREDAMKMGA 224

>1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A* Length = 373

 Score = 46.4 bits (111), Expect = 5e-06
 Identities = 48/247 (19%), Positives = 77/247 (31%), Gaps = 82/247 (33%)

Query: 52  SDLLLYNGSGDAKPTLPLVPGFEFSGTVIEVADTKSSSTEEDDEEDV--LQVGDKVLAL- 108
           SD              P++ G E  G V  +               V  ++ GDKV+ L 
Sbjct: 49  SDS--SVLKEIIPSKFPVILGHEAVGVVESIG------------AGVTCVKPGDKVIPLF 94

Query: 109 ----------------------------------------NKELLH-----GFSDQCVVH 123
                                                    K + +      F++  VV 
Sbjct: 95  VPQCGSCRACKSSNSNFCEKNDMGAKTGLMADMTSRFTCRGKPIYNLMGTSTFTEYTVVA 154

Query: 124 TNDVFKIPEKMTFEHAASLADSYST---AQIVFSRHAKLKEKQTVLVTAAGGGLGLAAVD 180
              V KI  K   E +  +   ++T   A +     AK+    T  V    GG+G +A+ 
Sbjct: 155 DIAVAKIDPKAPLE-SCLIGCGFATGYGAAV---NTAKVTPGSTCAVFGL-GGVGFSAI- 208

Query: 181 MATKIYKA-KVIGVCNSEDKTDLIRQKGAWAALT-FTN----EKSLVNKVLEVSGGKYAN 234
           +  K   A ++IGV   +DK     + GA    T   N    +K +   + E + G   +
Sbjct: 209 VGCKAAGASRIIGVGTHKDKFPKAIELGA----TECLNPKDYDKPIYEVICEKTNGG-VD 263

Query: 235 VVFEAVG 241
              E  G
Sbjct: 264 YAVECAG 270

>2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A* Length = 357

 Score = 46.0 bits (110), Expect = 6e-06
 Identities = 53/200 (26%), Positives = 71/200 (35%), Gaps = 65/200 (32%)

Query: 52  SDL-LLYNGSGDAKPTLPLVPGFEFSGTVIEVAD--TKSSSTEEDDEEDVLQVGDKV--- 105
           +DL    N  G +    P+VPG E  G V+EV    +K              VGD V   
Sbjct: 49  TDLHQTKNDLGMSN--YPMVPGHEVVGEVVEVGSDVSK------------FTVGDIVGVG 94

Query: 106 -----------------------------LALNKELLHG-FSDQCVVHTNDVFKIPEKMT 135
                                        + +N +   G F+   VVH   V KIPE M 
Sbjct: 95  CLVGCCGGCSPCERDLEQYCPKKIWSYNDVYINGQPTQGGFAKATVVHQKFVVKIPEGMA 154

Query: 136 FEHAASLADSYSTAQI-VFS--RHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKA---K 189
            E AA L      A + V+S   H  LK+          GG+G     M  KI KA    
Sbjct: 155 VEQAAPLL----CAGVTVYSPLSHFGLKQPGLRGGILGLGGVG----HMGVKIAKAMGHH 206

Query: 190 VIGVCNSEDK-TDLIRQKGA 208
           V  + +S  K  + ++  GA
Sbjct: 207 VTVISSSNKKREEALQDLGA 226

>1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 Length = 369

 Score = 44.9 bits (107), Expect = 1e-05
 Identities = 48/202 (23%), Positives = 60/202 (29%), Gaps = 69/202 (34%)

Query: 52  SDL-LLYNGSGDAKPTLPLVPGFEFSGTVIEVAD--TKSSSTEEDDEEDVLQVGDKV--- 105
           SDL  + +         P VPG E  G V+ V D   K               GD V   
Sbjct: 62  SDLHQVRSEWAGT--VYPCVPGHEIVGRVVAVGDQVEK------------YAPGDLVGVG 107

Query: 106 ------------------------LALNKELLH-------GFSDQCVVHTNDVFKIPEKM 134
                                      N            G+S Q VVH   V +I    
Sbjct: 108 CIVDSCKHCEECEDGLENYCDHMTGTYNSPTPDEPGHTLGGYSQQIVVHERYVLRIRHPQ 167

Query: 135 -TFEHAASLADSYSTAQI-VFS--RHAKLKEKQTVLVTAAG-GGLGLAAVDMATKIYKA- 188
                 A L      A I  +S  RH +    + V V   G GGLG     M  K+  A 
Sbjct: 168 EQLAAVAPLL----CAGITTYSPLRHWQAGPGKKVGV--VGIGGLG----HMGIKLAHAM 217

Query: 189 --KVIGVCNSEDKTDLIRQKGA 208
              V+    SE K +  +  GA
Sbjct: 218 GAHVVAFTTSEAKREAAKALGA 239

>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154

 Score = 39.9 bits (92), Expect = 2e-04
 Identities = 11/40 (27%), Positives = 20/40 (50%), Gaps = 10/40 (25%)

Query: 42 EKKMMTRINSSDLLLYNGSGDAKPTLPLVPGFEFSGTVIE 81
          EK+ + ++ +S L LY  + D+ P L +        T +E
Sbjct: 18 EKQALKKLQAS-LKLY--ADDSAPALAI------KAT-ME 47

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	296
4dup_A	353	Quinone oxidoreductase; PSI-biology, structural ge	100.0
4eye_A	342	Probable oxidoreductase; structural genomics, niai	100.0
3uog_A	363	Alcohol dehydrogenase; structural genomics, protei	100.0
3qwb_A	334	Probable quinone oxidoreductase; rossmann fold, qu	100.0
3gms_A	340	Putative NADPH:quinone reductase; structural genom	100.0
4eez_A	348	Alcohol dehydrogenase 1; site-saturation mutagenes	100.0
3gaz_A	343	Alcohol dehydrogenase superfamily protein; oxidore	100.0
2j8z_A	354	Quinone oxidoreductase; medium-chain dehydrogenase	100.0
3jyn_A	325	Quinone oxidoreductase; rossmann fold, protein-NAD	100.0
3s2e_A	340	Zinc-containing alcohol dehydrogenase superfamily;	100.0
3jv7_A	345	ADH-A; dehydrogenase, nucleotide binding, rossmann	100.0
4a27_A	349	Synaptic vesicle membrane protein VAT-1 homolog-L;	100.0
3uko_A	378	Alcohol dehydrogenase class-3; alcohol dehydrogena	100.0
1yb5_A	351	Quinone oxidoreductase; medium-chain dehydrogenase	100.0
4dvj_A	363	Putative zinc-dependent alcohol dehydrogenase Pro;	100.0
3fbg_A	346	Putative arginate lyase; structural genomics, unkn	100.0
2eih_A	343	Alcohol dehydrogenase; zinc ION binding protein, s	100.0
3pi7_A	349	NADH oxidoreductase; groes-like fold, NAD(P)-bindi	100.0
1p0f_A	373	NADP-dependent alcohol dehydrogenase; ADH topology	100.0
1f8f_A	371	Benzyl alcohol dehydrogenase; rossmann fold, oxido	100.0
1rjw_A	339	ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD	100.0
1wly_A	333	CAAR, 2-haloacrylate reductase; NADPH-dependent ox	100.0
3fpc_A	352	NADP-dependent alcohol dehydrogenase; oxydoreducta	100.0
1h2b_A	359	Alcohol dehydrogenase; oxidoreductase, archaea, hy	100.0
3gqv_A	371	Enoyl reductase; medium-chain reductase (MDR super	100.0
1e3i_A	376	Alcohol dehydrogenase, class II; HET: NAD; 2.08A {	100.0
4ej6_A	370	Putative zinc-binding dehydrogenase; structural ge	100.0
1qor_A	327	Quinone oxidoreductase; HET: NAP; 2.20A {Escherich	100.0
2jhf_A	374	Alcohol dehydrogenase E chain; oxidoreductase, met	100.0
3goh_A	315	Alcohol dehydrogenase, zinc-containing; NP_718042.	100.0
4a2c_A	346	Galactitol-1-phosphate 5-dehydrogenase; oxidoreduc	100.0
2d8a_A	348	PH0655, probable L-threonine 3-dehydrogenase; pyro	100.0
2fzw_A	373	Alcohol dehydrogenase class III CHI chain; S-nitro	100.0
1cdo_A	374	Alcohol dehydrogenase; oxidoreductase, oxidoreduct	100.0
1zsy_A	357	Mitochondrial 2-enoyl thioester reductase; medium-	100.0
1gu7_A	364	Enoyl-[acyl-carrier-protein] reductase [NADPH, B-s	100.0
2hcy_A	347	Alcohol dehydrogenase 1; tetramer of asymmetric di	100.0
1pl8_A	356	Human sorbitol dehydrogenase; NAD, oxidoreductase;	100.0
3nx4_A	324	Putative oxidoreductase; csgid, structural genomic	100.0
1e3j_A	352	NADP(H)-dependent ketose reductase; oxidoreductase	100.0
3tqh_A	321	Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella	100.0
3m6i_A	363	L-arabinitol 4-dehydrogenase; medium chain dehydro	100.0
1vj0_A	380	Alcohol dehydrogenase, zinc-containing; TM0436, st	100.0
2dq4_A	343	L-threonine 3-dehydrogenase; NAD-dependent, oxidor	100.0
3two_A	348	Mannitol dehydrogenase; cinnamyl-alcohol dehydroge	100.0
3krt_A	456	Crotonyl COA reductase; structural genomics, prote	100.0
1piw_A	360	Hypothetical zinc-type alcohol dehydrogenase- like	100.0
2dph_A	398	Formaldehyde dismutase; dismutation of aldehydes,	100.0
4a0s_A	447	Octenoyl-COA reductase/carboxylase; oxidoreductase	100.0
2c0c_A	362	Zinc binding alcohol dehydrogenase, domain contain	100.0
1uuf_A	369	YAHK, zinc-type alcohol dehydrogenase-like protein	100.0
2h6e_A	344	ADH-4, D-arabinose 1-dehydrogenase; rossman fold,	100.0
2vn8_A	375	Reticulon-4-interacting protein 1; mitochondrion,	100.0
1kol_A	398	Formaldehyde dehydrogenase; oxidoreductase; HET: N	100.0
1jvb_A	347	NAD(H)-dependent alcohol dehydrogenase; archaeon,	100.0
2b5w_A	357	Glucose dehydrogenase; nucleotide binding motif, o	100.0
1xa0_A	328	Putative NADPH dependent oxidoreductases; structur	100.0
3ip1_A	404	Alcohol dehydrogenase, zinc-containing; structural	100.0
3iup_A	379	Putative NADPH:quinone oxidoreductase; YP_296108.1	100.0
2cf5_A	357	Atccad5, CAD, cinnamyl alcohol dehydrogenase; lign	100.0
1tt7_A	330	YHFP; alcohol dehydrogenase, Zn-dependent, NAD, st	100.0
1yqd_A	366	Sinapyl alcohol dehydrogenase; lignin, monolignol,	100.0
4b7c_A	336	Probable oxidoreductase; NADP cofactor, rossmann f	100.0
1iz0_A	302	Quinone oxidoreductase; APO-enzyme, riken structur	100.0
3slk_A	795	Polyketide synthase extender module 2; rossmann fo	100.0
2zb4_A	357	Prostaglandin reductase 2; rossmann fold, alternat	100.0
2cdc_A	366	Glucose dehydrogenase glucose 1-dehydrogenase, DHG	100.0
1v3u_A	333	Leukotriene B4 12- hydroxydehydrogenase/prostaglan	100.0
2j3h_A	345	NADP-dependent oxidoreductase P1; double bond redu	100.0
2vz8_A	2512	Fatty acid synthase; transferase, phosphopantethei	99.94
1pqw_A	198	Polyketide synthase; rossmann fold, dimer, structu	99.79
1gpj_A	404	Glutamyl-tRNA reductase; tRNA-dependent tetrapyrro	98.45
1pjc_A	361	Protein (L-alanine dehydrogenase); oxidoreductase,	98.05
2eez_A	369	Alanine dehydrogenase; TTHA0216, structural genomi	97.92
3ce6_A	494	Adenosylhomocysteinase; protein-substrate complex,	97.91
2vhw_A	377	Alanine dehydrogenase; NAD, secreted, oxidoreducta	97.88
2yvl_A	248	TRMI protein, hypothetical protein; tRNA, methyltr	97.75
1l7d_A	384	Nicotinamide nucleotide transhydrogenase, subunit	97.74
3ic5_A	118	Putative saccharopine dehydrogenase; structural ge	97.61
1x13_A	401	NAD(P) transhydrogenase subunit alpha; NAD(H)-bind	97.53
3ged_A	247	Short-chain dehydrogenase/reductase SDR; SCOR, ros	97.5
3e8x_A	236	Putative NAD-dependent epimerase/dehydratase; stru	97.38
4fgs_A	273	Probable dehydrogenase protein; PSI-biology, nysgr	97.38
3h7a_A	252	Short chain dehydrogenase; oxidoreductase, PSI-2,	97.37
4fn4_A	254	Short chain dehydrogenase; NADH-binding, rossmann	97.37
4b79_A	242	PA4098, probable short-chain dehydrogenase; oxidor	97.36
2z1n_A	260	Dehydrogenase; reductase, SDR, oxidoreductase; 1.8	97.36
4g81_D	255	Putative hexonate dehydrogenase; enzyme function i	97.31
3f9i_A	249	3-oxoacyl-[acyl-carrier-protein] reductase; 3-keto	97.31
3d3w_A	244	L-xylulose reductase; uronate cycle, short-chain d	97.28
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	97.26
3oj0_A	144	Glutr, glutamyl-tRNA reductase; structural genomic	97.26
4hp8_A	247	2-deoxy-D-gluconate 3-dehydrogenase; enzyme functi	97.25
3rd5_A	291	Mypaa.01249.C; ssgcid, structural genomics, seattl	97.18
2wsb_A	254	Galactitol dehydrogenase; oxidoreductase, SDR, ros	97.18
3dii_A	247	Short-chain dehydrogenase/reductase SDR; SCOR, ros	97.17
3f1l_A	252	Uncharacterized oxidoreductase YCIK; E. coli, NADP	97.17
3l77_A	235	Short-chain alcohol dehydrogenase; oxidoreductase;	97.17
3rwb_A	247	TPLDH, pyridoxal 4-dehydrogenase; short chain dehy	97.16
3r6d_A	221	NAD-dependent epimerase/dehydratase; structural ge	97.15
3p2y_A	381	Alanine dehydrogenase/pyridine nucleotide transhy;	97.15
1uls_A	245	Putative 3-oxoacyl-acyl carrier protein reductase;	97.15
3c85_A	183	Putative glutathione-regulated potassium-efflux S	97.13
1cyd_A	244	Carbonyl reductase; short-chain dehydrogenase, oxi	97.12
2ae2_A	260	Protein (tropinone reductase-II); oxidoreductase,	97.12
4gkb_A	258	3-oxoacyl-[acyl-carrier protein] reductase; putati	97.11
4imr_A	275	3-oxoacyl-(acyl-carrier-protein) reductase; oxidor	97.1
1hdc_A	254	3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxi	97.1
3ai3_A	263	NADPH-sorbose reductase; rossmann-fold, NADPH-depe	97.1
4eso_A	255	Putative oxidoreductase; NADP, structural genomics	97.09
3ioy_A	319	Short-chain dehydrogenase/reductase SDR; structura	97.09
1ae1_A	273	Tropinone reductase-I; oxidoreductase, tropane alk	97.08
1iy8_A	267	Levodione reductase; oxidoreductase; HET: NAD; 1.6	97.08
3ppi_A	281	3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, de	97.08
4dio_A	405	NAD(P) transhydrogenase subunit alpha PART 1; stru	97.07
3ak4_A	263	NADH-dependent quinuclidinone reductase; SDR, (R)-	97.07
3n74_A	261	3-ketoacyl-(acyl-carrier-protein) reductase; seatt	97.06
3r1i_A	276	Short-chain type dehydrogenase/reductase; structur	97.06
3nyw_A	250	Putative oxidoreductase; fatty acid synthesis,3-ox	97.05
3gem_A	260	Short chain dehydrogenase; structural genomics, AP	97.05
2ew8_A	249	(S)-1-phenylethanol dehydrogenase; transferase; 2.	97.05
4dry_A	281	3-oxoacyl-[acyl-carrier-protein] reductase; struct	97.04
3tjr_A	301	Short chain dehydrogenase; structural genomics, se	97.04
4e6p_A	259	Probable sorbitol dehydrogenase (L-iditol 2-dehyd;	97.04
2jah_A	247	Clavulanic acid dehydrogenase; short-chain dehydro	97.03
3op4_A	248	3-oxoacyl-[acyl-carrier protein] reductase; 3-keto	97.03
1yo6_A	250	Putative carbonyl reductase sniffer; tyrosine-depe	97.03
4dqx_A	277	Probable oxidoreductase protein; structural genomi	97.02
4fs3_A	256	Enoyl-[acyl-carrier-protein] reductase [NADPH] FA;	97.02
3qiv_A	253	Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR	97.01
3p19_A	266	BFPVVD8, putative blue fluorescent protein; rossma	96.99
3imf_A	257	Short chain dehydrogenase; structural genomics, in	96.99
1vl8_A	267	Gluconate 5-dehydrogenase; TM0441, structural geno	96.99
3rkr_A	262	Short chain oxidoreductase; rossmann fold; HET: NA	96.99
3grp_A	266	3-oxoacyl-(acyl carrierprotein) reductase; structu	96.98
3tfo_A	264	Putative 3-oxoacyl-(acyl-carrier-protein) reducta;	96.98
1yde_A	270	Retinal dehydrogenase/reductase 3; oxidoreductase,	96.98
3cxt_A	291	Dehydrogenase with different specificities; rossma	96.98
3l6e_A	235	Oxidoreductase, short-chain dehydrogenase/reducta;	96.98
3tzq_B	271	Short-chain type dehydrogenase/reductase; ssgcid,	96.98
3lyl_A	247	3-oxoacyl-(acyl-carrier-protein) reductase; alpha	96.98
4egf_A	266	L-xylulose reductase; structural genomics, ssgcid,	96.97
1xq1_A	266	Putative tropinone reducatse; structural genomics,	96.97
2ag5_A	246	DHRS6, dehydrogenase/reductase (SDR family) member	96.97
3kvo_A	346	Hydroxysteroid dehydrogenase-like protein 2; HSDL2	96.96
1xkq_A	280	Short-chain reductase family member (5D234); parra	96.95
1nff_A	260	Putative oxidoreductase RV2002; directed evolution	96.95
3zv4_A	281	CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; ox	96.95
3sc4_A	285	Short chain dehydrogenase (A0QTM2 homolog); ssgcid	96.95
3ftp_A	270	3-oxoacyl-[acyl-carrier protein] reductase; ssgcid	96.94
2d1y_A	256	Hypothetical protein TT0321; strucrtural genomics,	96.94
1zem_A	262	Xylitol dehydrogenase; rossmann fold, dinucleotide	96.93
1sny_A	267	Sniffer CG10964-PA; alpha and beta protein, rossma	96.93
2rhc_B	277	Actinorhodin polyketide ketoreductase; oxidoreduct	96.93
1o5i_A	249	3-oxoacyl-(acyl carrier protein) reductase; TM1169	96.93
2o23_A	265	HADH2 protein; HSD17B10, schad, ERAB, type II HADH	96.93
3m1a_A	281	Putative dehydrogenase; short, PSI, MCSG, structur	96.92
3uf0_A	273	Short-chain dehydrogenase/reductase SDR; gluconate	96.92
1x1t_A	260	D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, S	96.92
3sju_A	279	Keto reductase; short-chain dehydrogenase, oxidore	96.91
3ucx_A	264	Short chain dehydrogenase; ssgcid, seattle structu	96.91
1zmo_A	244	Halohydrin dehalogenase; haloalcohol dehalogenase,	96.91
1g0o_A	283	Trihydroxynaphthalene reductase; protein-NADPH-act	96.91
3awd_A	260	GOX2181, putative polyol dehydrogenase; oxidoreduc	96.91
2qq5_A	260	DHRS1, dehydrogenase/reductase SDR family member 1	96.91
2ehd_A	234	Oxidoreductase, oxidoreductase, short-chain dehydr	96.9
1yb1_A	272	17-beta-hydroxysteroid dehydrogenase type XI; shor	96.9
1w6u_A	302	2,4-dienoyl-COA reductase, mitochondrial precursor	96.9
3tox_A	280	Short chain dehydrogenase; structural genomics, PS	96.9
3v8b_A	283	Putative dehydrogenase, possibly 3-oxoacyl-[acyl-	96.89
2pnf_A	248	3-oxoacyl-[acyl-carrier-protein] reductase; short	96.88
3t4x_A	267	Oxidoreductase, short chain dehydrogenase/reducta;	96.88
3e03_A	274	Short chain dehydrogenase; structural genomics, PS	96.88
3gvc_A	277	Oxidoreductase, probable short-chain type dehydrog	96.88
3svt_A	281	Short-chain type dehydrogenase/reductase; ssgcid,	96.87
1geg_A	256	Acetoin reductase; SDR family, oxidoreductase; HET	96.87
3tpc_A	257	Short chain alcohol dehydrogenase-related dehydro;	96.87
4dyv_A	272	Short-chain dehydrogenase/reductase SDR; structura	96.87
2ekp_A	239	2-deoxy-D-gluconate 3-dehydrogenase; structural ge	96.86
2zat_A	260	Dehydrogenase/reductase SDR family member 4; alpha	96.86
1xg5_A	279	ARPG836; short chain dehydrogenase, human, SGC, st	96.85
2b4q_A	276	Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier	96.85
3rih_A	293	Short chain dehydrogenase or reductase; structural	96.85
1yxm_A	303	Pecra, peroxisomal trans 2-enoyl COA reductase; pe	96.85
3t7c_A	299	Carveol dehydrogenase; structural genomics, seattl	96.85
1hxh_A	253	3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-b	96.83
3gaf_A	256	7-alpha-hydroxysteroid dehydrogenase; seattle stru	96.83
3pk0_A	262	Short-chain dehydrogenase/reductase SDR; ssgcid, s	96.83
3fpf_A	298	Mtnas, putative uncharacterized protein; thermonic	96.83
3lf2_A	265	Short chain oxidoreductase Q9HYA2; SDR, SCOR, ross	96.82
3s55_A	281	Putative short-chain dehydrogenase/reductase; stru	96.82
3qvo_A	236	NMRA family protein; structural genomics, PSI-biol	96.82
1zk4_A	251	R-specific alcohol dehydrogenase; short chain redu	96.82
2a4k_A	263	3-oxoacyl-[acyl carrier protein] reductase; reduct	96.82
2uvd_A	246	3-oxoacyl-(acyl-carrier-protein) reductase; beta-k	96.82
2c07_A	285	3-oxoacyl-(acyl-carrier protein) reductase; oxidor	96.81
3i1j_A	247	Oxidoreductase, short chain dehydrogenase/reducta;	96.81
3ek2_A	271	Enoyl-(acyl-carrier-protein) reductase (NADH); ssg	96.81
3tl3_A	257	Short-chain type dehydrogenase/reductase; ssgcid,	96.81
3gvp_A	435	Adenosylhomocysteinase 3; protein CO-factor comple	96.81
1zmt_A	254	Haloalcohol dehalogenase HHEC; halohydrin dehaloge	96.81
3o26_A	311	Salutaridine reductase; short chain dehydrogenase/	96.8
3afn_B	258	Carbonyl reductase; alpha/beta/alpha, rossmann-fol	96.79
4fc7_A	277	Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossman	96.79
1o54_A	277	SAM-dependent O-methyltransferase; TM0748, structu	96.79
1xhl_A	297	Short-chain dehydrogenase/reductase family member	96.79
2bgk_A	278	Rhizome secoisolariciresinol dehydrogenase; oxidor	96.78
3pxx_A	287	Carveol dehydrogenase; structural genomics, seattl	96.78
1fmc_A	255	7 alpha-hydroxysteroid dehydrogenase; short-chain	96.77
3oid_A	258	Enoyl-[acyl-carrier-protein] reductase [NADPH]; fa	96.77
3ijr_A	291	Oxidoreductase, short chain dehydrogenase/reducta;	96.76
1spx_A	278	Short-chain reductase family member (5L265); paral	96.76
1mxh_A	276	Pteridine reductase 2; SDR topology, protein-subst	96.75
4ibo_A	271	Gluconate dehydrogenase; enzyme function initiativ	96.75
3sx2_A	278	Putative 3-ketoacyl-(acyl-carrier-protein) reduct;	96.75
2gdz_A	267	NAD+-dependent 15-hydroxyprostaglandin dehydrogen;	96.75
1gee_A	261	Glucose 1-dehydrogenase; short-chain dehydrogenase	96.73
3uve_A	286	Carveol dehydrogenase ((+)-trans-carveol dehydrog;	96.73
3k31_A	296	Enoyl-(acyl-carrier-protein) reductase; ssgcid, NI	96.73
1wma_A	276	Carbonyl reductase [NADPH] 1; oxidoreductase; HET:	96.72
2pd6_A	264	Estradiol 17-beta-dehydrogenase 8; short-chain deh	96.72
3ksu_A	262	3-oxoacyl-acyl carrier protein reductase; structur	96.71
2q2v_A	255	Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidore	96.71
3tsc_A	277	Putative oxidoreductase; structural genomics, seat	96.7
3orf_A	251	Dihydropteridine reductase; alpha-beta-alpha sandw	96.69
1xq6_A	253	Unknown protein; structural genomics, protein stru	96.68
2cfc_A	250	2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidor	96.68
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	96.68
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	96.67
3uce_A	223	Dehydrogenase; rossmann fold, oxidoreductase; HET:	96.66
3h2s_A	224	Putative NADH-flavin reductase; Q03B84, NESG, LCR1	96.66
1gz6_A	319	Estradiol 17 beta-dehydrogenase 4; 17BETA-HSD4, MF	96.66
3pgx_A	280	Carveol dehydrogenase; structural genomics, seattl	96.66
3vtz_A	269	Glucose 1-dehydrogenase; rossmann fold, oxidoreduc	96.65
3d4o_A	293	Dipicolinate synthase subunit A; NP_243269.1, stru	96.64
3asu_A	248	Short-chain dehydrogenase/reductase SDR; SDR famil	96.64
4da9_A	280	Short-chain dehydrogenase/reductase; structural ge	96.64
3guy_A	230	Short-chain dehydrogenase/reductase SDR; structura	96.63
3d7l_A	202	LIN1944 protein; APC89317, structural genomics, PS	96.63
3a28_C	258	L-2.3-butanediol dehydrogenase; chiral substrate r	96.63
3oec_A	317	Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO;	96.63
2hq1_A	247	Glucose/ribitol dehydrogenase; CTH-1438, structura	96.63
4h15_A	261	Short chain alcohol dehydrogenase-related dehydro;	96.62
3v2h_A	281	D-beta-hydroxybutyrate dehydrogenase; structural g	96.62
3qlj_A	322	Short chain dehydrogenase; structural genomics, se	96.61
3oig_A	266	Enoyl-[acyl-carrier-protein] reductase [NADH]; fat	96.61
3v2g_A	271	3-oxoacyl-[acyl-carrier-protein] reductase; struct	96.6
1dhr_A	241	Dihydropteridine reductase; oxidoreductase(acting	96.6
1xu9_A	286	Corticosteroid 11-beta-dehydrogenase, isozyme 1; h	96.59
1qsg_A	265	Enoyl-[acyl-carrier-protein] reductase; enoyl redu	96.59
3is3_A	270	17BETA-hydroxysteroid dehydrogenase; short chain d	96.58
3ond_A	488	Adenosylhomocysteinase; plant protein, enzyme-subs	96.57
1ooe_A	236	Dihydropteridine reductase; structural genomics, P	96.57
3ctm_A	279	Carbonyl reductase; alcohol dehydrogenase, short-c	96.57
2bd0_A	244	Sepiapterin reductase; oxidoreductase; HET: NAP BI	96.56
2x9g_A	288	PTR1, pteridine reductase; short chain dehydrogena	96.56
4iin_A	271	3-ketoacyl-acyl carrier protein reductase (FABG);	96.56
4dmm_A	269	3-oxoacyl-[acyl-carrier-protein] reductase; rossma	96.55
1lu9_A	287	Methylene tetrahydromethanopterin dehydrogenase; a	96.55
1oaa_A	259	Sepiapterin reductase; tetrahydrobiopterin, oxidor	96.54
3rku_A	287	Oxidoreductase YMR226C; substrate fingerprint, sho	96.53
3u9l_A	324	3-oxoacyl-[acyl-carrier-protein] reductase; struct	96.53
3ew7_A	221	LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend	96.53
2nwq_A	272	Probable short-chain dehydrogenase; oxidoreductase	96.53
2pd4_A	275	Enoyl-[acyl-carrier-protein] reductase [NADH]; ant	96.52
2ph3_A	245	3-oxoacyl-[acyl carrier protein] reductase; TTHA04	96.52
3enk_A	341	UDP-glucose 4-epimerase; seattle structural genomi	96.51
3dqp_A	219	Oxidoreductase YLBE; alpha-beta protein., structur	96.51
1ja9_A	274	4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; p	96.49
2h7i_A	269	Enoyl-[acyl-carrier-protein] reductase [NADH]; oxi	96.49
2fwm_X	250	2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; e	96.48
3s8m_A	422	Enoyl-ACP reductase; rossmann fold, oxidoreductase	96.48
3o38_A	266	Short chain dehydrogenase; tuberculosis, ortholog	96.48
2nm0_A	253	Probable 3-oxacyl-(acyl-carrier-protein) reductas;	96.48
2dtx_A	264	Glucose 1-dehydrogenase related protein; rossmann	96.47
2gn4_A	344	FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann	96.46
3edm_A	259	Short chain dehydrogenase; structural genomics, ox	96.45
2bka_A	242	CC3, TAT-interacting protein TIP30; NADPH, PEG600,	96.41
1uzm_A	247	3-oxoacyl-[acyl-carrier protein] reductase; beta-k	96.41
1edo_A	244	Beta-keto acyl carrier protein reductase; nucleoti	96.4
3osu_A	246	3-oxoacyl-[acyl-carrier-protein] reductase; struct	96.4
1h5q_A	265	NADP-dependent mannitol dehydrogenase; oxidoreduct	96.39
1sby_A	254	Alcohol dehydrogenase; ternary complex, NAD, trifl	96.39
3grk_A	293	Enoyl-(acyl-carrier-protein) reductase (NADH); ssg	96.39
3u5t_A	267	3-oxoacyl-[acyl-carrier-protein] reductase; struct	96.38
2wyu_A	261	Enoyl-[acyl carrier protein] reductase; oxidoreduc	96.38
3e9n_A	245	Putative short-chain dehydrogenase/reductase; stru	96.37
2p91_A	285	Enoyl-[acyl-carrier-protein] reductase [NADH]; NAD	96.37
3nrc_A	280	Enoyl-[acyl-carrier-protein] reductase (NADH); ros	96.37
3r3s_A	294	Oxidoreductase; structural genomics, csgid, center	96.37
3rft_A	267	Uronate dehydrogenase; apoenzyme, rossmann fold, N	96.35
3uxy_A	266	Short-chain dehydrogenase/reductase SDR; structura	96.34
3zu3_A	405	Putative reductase YPO4104/Y4119/YP_4011; oxidored	96.33
4e3z_A	272	Putative oxidoreductase protein; PSI-biology, stru	96.33
1e7w_A	291	Pteridine reductase; dihydrofolate reductase, shor	96.31
2qhx_A	328	Pteridine reductase 1; oxidoreductase, short-chain	96.29
1hdo_A	206	Biliverdin IX beta reductase; foetal metabolism, H	96.29
3nzo_A	399	UDP-N-acetylglucosamine 4,6-dehydratase; structura	96.27
3kzv_A	254	Uncharacterized oxidoreductase YIR035C; cytoplasmi	96.26
1rpn_A	335	GDP-mannose 4,6-dehydratase; short-chain dehydroge	96.25
2rir_A	300	Dipicolinate synthase, A chain; structural genomic	96.24
3ezl_A	256	Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA	96.24
3dhn_A	227	NAD-dependent epimerase/dehydratase; reductase, PF	96.23
1y1p_A	342	ARII, aldehyde reductase II; rossmann fold, short	96.22
2z1m_A	345	GDP-D-mannose dehydratase; short-chain dehydrogena	96.22
2hmt_A	144	YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane	96.21
3e48_A	289	Putative nucleoside-diphosphate-sugar epimerase; a	96.19
3ruf_A	351	WBGU; rossmann fold, UDP-hexose 4-epimerase, isome	96.18
3i6i_A	346	Putative leucoanthocyanidin reductase 1; rossmann	96.18
1uay_A	242	Type II 3-hydroxyacyl-COA dehydrogenase; beta oxid	96.18
3m2p_A	311	UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J	96.14
3n58_A	464	Adenosylhomocysteinase; ssgcid, hydrolase, structu	96.13
2et6_A	604	(3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-ox	96.12
2wm3_A	299	NMRA-like family domain containing protein 1; unkn	96.1
4e4y_A	244	Short chain dehydrogenase family protein; structur	96.1
3un1_A	260	Probable oxidoreductase; structural genomics, PSI-	96.08
2z5l_A	511	Tylkr1, tylactone synthase starter module and modu	96.06
3oml_A	613	GH14720P, peroxisomal multifunctional enzyme type	96.06
2x4g_A	342	Nucleoside-diphosphate-sugar epimerase; isomerase;	96.03
4eue_A	418	Putative reductase CA_C0462; TER, biofuel, synthet	96.02
3mje_A	496	AMPHB; rossmann fold, oxidoreductase; HET: NDP; 1.	95.98
3h9u_A	436	Adenosylhomocysteinase; NAD CO-factor complex, str	95.96
2jl1_A	287	Triphenylmethane reductase; oxidoreductase, biorem	95.92
2gas_A	307	Isoflavone reductase; NADPH-dependent reductase, o	95.91
2zcu_A	286	Uncharacterized oxidoreductase YTFG; alpha-beta sa	95.9
3gk3_A	269	Acetoacetyl-COA reductase; acetoacetyl-CO reductas	95.9
1rkx_A	357	CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD;	95.9
1fjh_A	257	3alpha-hydroxysteroid dehydrogenase/carbonyl reduc	95.89
2pzm_A	330	Putative nucleotide sugar epimerase/ dehydratase;	95.84
3abi_A	365	Putative uncharacterized protein PH1688; L-lysine	95.82
3i4f_A	264	3-oxoacyl-[acyl-carrier protein] reductase; struct	95.81
3sxp_A	362	ADP-L-glycero-D-mannoheptose-6-epimerase; rossman	95.77
1c1d_A	355	L-phenylalanine dehydrogenase; amino acid dehydrog	95.76
2fr1_A	486	Erythromycin synthase, eryai; short chain dehydrog	95.76
3slg_A	372	PBGP3 protein; structural genomics, seattle struct	95.73
4iiu_A	267	3-oxoacyl-[acyl-carrier protein] reductase; struct	95.73
3qp9_A	525	Type I polyketide synthase pikaii; rossmann fold,	95.73
2dkn_A	255	3-alpha-hydroxysteroid dehydrogenase; oxidoreducta	95.73
4id9_A	347	Short-chain dehydrogenase/reductase; putative dehy	95.7
3gdg_A	267	Probable NADP-dependent mannitol dehydrogenase; ro	95.69
1ek6_A	348	UDP-galactose 4-epimerase; short-chain dehydrogena	95.68
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	95.68
2et6_A	604	(3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-ox	95.67
2ydy_A	315	Methionine adenosyltransferase 2 subunit beta; oxi	95.66
2pk3_A	321	GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, shor	95.65
2q1w_A	333	Putative nucleotide sugar epimerase/ dehydratase;	95.62
2yut_A	207	Putative short-chain oxidoreductase; alpha and bet	95.6
2c5a_A	379	GDP-mannose-3', 5'-epimerase; short chain dehydrat	95.59
3icc_A	255	Putative 3-oxoacyl-(acyl carrier protein) reducta;	95.59
1jtv_A	327	17 beta-hydroxysteroid dehydrogenase type 1; stero	95.54
1sb8_A	352	WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCN	95.54
1qyd_A	313	Pinoresinol-lariciresinol reductase; NADPH-depende	95.52
1db3_A	372	GDP-mannose 4,6-dehydratase; NADP, GDP-fucose, lya	95.51
3u0b_A	454	Oxidoreductase, short chain dehydrogenase/reducta	95.51
2bll_A	345	Protein YFBG; decarboxylase, short chain dehydroge	95.48
3slk_A	795	Polyketide synthase extender module 2; rossmann fo	95.42
3phh_A	269	Shikimate dehydrogenase; shikimate pathway, helico	95.39
1vl0_A	292	DTDP-4-dehydrorhamnose reductase, RFBD ortholog; s	95.36
1p91_A	269	Ribosomal RNA large subunit methyltransferase A; R	95.32
1qyc_A	308	Phenylcoumaran benzylic ether reductase PT1; NADPH	95.31
3njr_A	204	Precorrin-6Y methylase; methyltransferase, decarbo	95.29
3c1o_A	321	Eugenol synthase; phenylpropene, PIP reductase, sh	95.27
2r6j_A	318	Eugenol synthase 1; phenylpropene, PIP reductase,	95.25
1u7z_A	226	Coenzyme A biosynthesis bifunctional protein coabc	95.25
2yy7_A	312	L-threonine dehydrogenase; thermolabIle, flavobact	95.21
1n7h_A	381	GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR,	95.17
2q1s_A	377	Putative nucleotide sugar epimerase/ dehydratase;	95.12
3tnl_A	315	Shikimate dehydrogenase; structural genomics, cent	95.08
2gpy_A	233	O-methyltransferase; structural genomics, PSI, pro	95.05
3ius_A	286	Uncharacterized conserved protein; APC63810, silic	95.02
1gy8_A	397	UDP-galactose 4-epimerase; oxidoreductase; HET: NA	94.97
1udb_A	338	Epimerase, UDP-galactose-4-epimerase; isomerase; H	94.96
2c20_A	330	UDP-glucose 4-epimerase; carbohydrate metabolism,	94.92
2z2v_A	365	Hypothetical protein PH1688; L-lysine dehydrogenas	94.9
2c29_D	337	Dihydroflavonol 4-reductase; flavonoids, short deh	94.9
4ina_A	405	Saccharopine dehydrogenase; structural genomics, P	94.89
2pwy_A	258	TRNA (adenine-N(1)-)-methyltransferase; mtase, ado	94.87
1i24_A	404	Sulfolipid biosynthesis protein SQD1; SDR, short-c	94.84
1kew_A	361	RMLB;, DTDP-D-glucose 4,6-dehydratase; rossmann fo	94.83
2o2s_A	315	Enoyl-acyl carrier reductase; enoyl reductase, tri	94.82
2ph5_A	480	Homospermidine synthase; alpha-beta protein, struc	94.8
1t2a_A	375	GDP-mannose 4,6 dehydratase; structural genomics c	94.79
2gk4_A	232	Conserved hypothetical protein; alpha-beta-alpha s	94.79
2nyu_A	196	Putative ribosomal RNA methyltransferase 2; SAM, s	94.79
3l9w_A	413	Glutathione-regulated potassium-efflux system Pro	94.76
1orr_A	347	CDP-tyvelose-2-epimerase; rossmann fold, short-cha	94.75
2v6g_A	364	Progesterone 5-beta-reductase; tyrosine-dependent	94.75
2egg_A	297	AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff	94.69
2axq_A	467	Saccharopine dehydrogenase; rossmann fold variant,	94.66
1jg1_A	235	PIMT;, protein-L-isoaspartate O-methyltransferase;	94.65
3mb5_A	255	SAM-dependent methyltransferase; RNA methyltransfe	94.63
3hm2_A	178	Precorrin-6Y C5,15-methyltransferase; alpha-beta-s	94.63
2x6t_A	357	ADP-L-glycero-D-manno-heptose-6-epimerase; isomera	94.61
2hun_A	336	336AA long hypothetical DTDP-glucose 4,6-dehydrat;	94.6
2a35_A	215	Hypothetical protein PA4017; alpha-beta-alpha sand	94.57
1xgk_A	352	Nitrogen metabolite repression regulator NMRA; ros	94.57
2p4h_X	322	Vestitone reductase; NADPH-dependent reductase, is	94.56
1p9l_A	245	Dihydrodipicolinate reductase; oxidoreductase, lys	94.51
4egb_A	346	DTDP-glucose 4,6-dehydratase; rhamnose pathway, ce	94.46
3lbf_A	210	Protein-L-isoaspartate O-methyltransferase; modifi	94.45
4ggo_A	401	Trans-2-enoyl-COA reductase; rossmann fold, oxidor	94.43
1z45_A	699	GAL10 bifunctional protein; epimerase, mutarotase,	94.43
2avd_A	229	Catechol-O-methyltransferase; structural genomics,	94.41
4dqv_A	478	Probable peptide synthetase NRP (peptide synthase;	94.39
3e05_A	204	Precorrin-6Y C5,15-methyltransferase (decarboxyla;	94.39
3tfw_A	248	Putative O-methyltransferase; PSI-biology, nysgrc,	94.37
1id1_A	153	Putative potassium channel protein; RCK domain, E.	94.35
2yxe_A	215	Protein-L-isoaspartate O-methyltransferase; rossma	94.31
1jw9_B	249	Molybdopterin biosynthesis MOEB protein; MOEB: mod	94.31
2hnk_A	239	SAM-dependent O-methyltransferase; modified rossma	94.29
2ggs_A	273	273AA long hypothetical DTDP-4-dehydrorhamnose red	94.17
2hrz_A	342	AGR_C_4963P, nucleoside-diphosphate-sugar epimeras	94.16
3o8q_A	281	Shikimate 5-dehydrogenase I alpha; structural geno	94.13
3sc6_A	287	DTDP-4-dehydrorhamnose reductase; RFBD, structural	94.13
1e6u_A	321	GDP-fucose synthetase; epimerase/reductase, SDR, R	94.09
1ff9_A	450	Saccharopine reductase; lysine biosynthesis, alpha	94.09
2p5y_A	311	UDP-glucose 4-epimerase; TTHA0591, structural geno	94.08
3pwz_A	272	Shikimate dehydrogenase 3; alpha-beta, oxidoreduct	94.08
1d7o_A	297	Enoyl-[acyl-carrier protein] reductase (NADH) PRE;	94.05
1eq2_A	310	ADP-L-glycero-D-mannoheptose 6-epimerase; N-termin	94.04
2nxc_A	254	L11 mtase, ribosomal protein L11 methyltransferase	94.02
2ptg_A	319	Enoyl-acyl carrier reductase; apicomplexa, enoyl (	93.98
3t4e_A	312	Quinate/shikimate dehydrogenase; structural genomi	93.97
1oc2_A	348	DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnos	93.95
1z7e_A	660	Protein aRNA; rossmann fold, OB-like fold, hydrola	93.91
2pbf_A	227	Protein-L-isoaspartate O-methyltransferase beta-A	93.85
1r0k_A	388	1-deoxy-D-xylulose 5-phosphate reductoisomerase; N	93.79
1r6d_A	337	TDP-glucose-4,6-dehydratase; rossmann fold, short-	93.75
4f6c_A	427	AUSA reductase domain protein; thioester reductase	93.72
2uv8_A	1887	Fatty acid synthase subunit alpha (FAS2); fatty ac	93.71
1leh_A	364	Leucine dehydrogenase; oxidoreductase; 2.20A {Lysi	93.65
3cbg_A	232	O-methyltransferase; cyanobacterium; HET: SAH FER	93.59
2uv9_A	1878	Fatty acid synthase alpha subunits; fungal, dehydr	93.55
3l4b_C	218	TRKA K+ channel protien TM1088B; potassium channel	93.54
3ggo_A	314	Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b	93.44
3ko8_A	312	NAD-dependent epimerase/dehydratase; isomerase, UD	93.43
3ay3_A	267	NAD-dependent epimerase/dehydratase; glucuronic ac	93.43
1i9g_A	280	Hypothetical protein RV2118C; mtase, adoMet, cryst	93.32
1n2s_A	299	DTDP-4-, DTDP-glucose oxidoreductase; rossman-fold	93.27
1vbf_A	231	231AA long hypothetical protein-L-isoaspartate O-	93.27
2fk8_A	318	Methoxy mycolic acid synthase 4; S-adenosylmethion	93.25
3dr5_A	221	Putative O-methyltransferase; Q8NRD3, CGL1119, PF0	93.17
1nyt_A	271	Shikimate 5-dehydrogenase; alpha/beta domains, WID	93.17
3hem_A	302	Cyclopropane-fatty-acyl-phospholipid synthase 2; p	93.13
1wwk_A	307	Phosphoglycerate dehydrogenase; riken structural g	93.12
1nvm_B	312	Acetaldehyde dehydrogenase (acylating), 4-hydroxy-	93.1
1l3i_A	192	Precorrin-6Y methyltransferase/putative decarboxyl	92.89
2pff_A	1688	Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl	92.81
3ajr_A	317	NDP-sugar epimerase; L-threonine dehydrogenase, L-	92.79
3ujc_A	266	Phosphoethanolamine N-methyltransferase; parasite;	92.79
3lt0_A	329	Enoyl-ACP reductase; triclosan, triclosan variant,	92.71
2vz8_A	2512	Fatty acid synthase; transferase, phosphopantethei	92.65
3zen_D	3089	Fatty acid synthase; transferase, mycolic acid bio	92.61
3grz_A	205	L11 mtase, ribosomal protein L11 methyltransferase	92.5
3a06_A	376	1-deoxy-D-xylulose 5-phosphate reductoisomerase; M	92.46
3dfz_A	223	SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase	92.46
1dl5_A	317	Protein-L-isoaspartate O-methyltransferase; isoasp	92.32
2aef_A	234	Calcium-gated potassium channel MTHK; rossmann fol	92.28
3jyo_A	283	Quinate/shikimate dehydrogenase; enzyme-cofactor c	92.26
2o7s_A	523	DHQ-SDH PR, bifunctional 3-dehydroquinate dehydrat	92.24
1r18_A	227	Protein-L-isoaspartate(D-aspartate)-O-methyltrans;	92.21
1sui_A	247	Caffeoyl-COA O-methyltransferase; rossmann fold, p	92.13
3d64_A	494	Adenosylhomocysteinase; structural genomics, ssgci	92.09
3cea_A	346	MYO-inositol 2-dehydrogenase; NP_786804.1, oxidore	92.06
2f1k_A	279	Prephenate dehydrogenase; tyrosine synthesis, X-RA	92.04
3don_A	277	Shikimate dehydrogenase; alpha-beta structure, ros	91.97
3eey_A	197	Putative rRNA methylase; rRNA methylation, S-adeno	91.96
1i1n_A	226	Protein-L-isoaspartate O-methyltransferase; S-aden	91.8
2g5c_A	281	Prephenate dehydrogenase; TYRA, oxidoreductase; HE	91.76
3tr6_A	225	O-methyltransferase; cellular processes; HET: SAH;	91.74
1jay_A	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossma	91.71
3ou2_A	218	SAM-dependent methyltransferase; O-methyltransfera	91.69
3lk7_A	451	UDP-N-acetylmuramoylalanine--D-glutamate ligase; a	91.6
1kpg_A	287	CFA synthase;, cyclopropane-fatty-acyl-phospholipi	91.58
3c3y_A	237	Pfomt, O-methyltransferase; plant secondary metabo	91.5
3pef_A	287	6-phosphogluconate dehydrogenase, NAD-binding; gam	91.43
3h8v_A	292	Ubiquitin-like modifier-activating enzyme 5; rossm	91.42
3c24_A	286	Putative oxidoreductase; YP_511008.1, structural g	91.35
1v8b_A	479	Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2	91.35
3duw_A	223	OMT, O-methyltransferase, putative; alternating of	91.16
1p77_A	272	Shikimate 5-dehydrogenase; NADPH, oxidoreductase;	90.96
1yb2_A	275	Hypothetical protein TA0852; structural genomics,	90.93
3ehe_A	313	UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC,	90.89
3st7_A	369	Capsular polysaccharide synthesis enzyme CAP5F; ro	90.74
3tum_A	269	Shikimate dehydrogenase family protein; rossmann-f	90.6
3g0o_A	303	3-hydroxyisobutyrate dehydrogenase; NAD(P), valine	90.57
3u62_A	253	Shikimate dehydrogenase; shikimate pathway, oxidor	90.4
2dbq_A	334	Glyoxylate reductase; D-3-phosphoglycerate dehydro	90.37
1vl6_A	388	Malate oxidoreductase; TM0542, NAD-dependent malic	90.34
4f6l_B	508	AUSA reductase domain protein; thioester reductase	90.32
1zej_A	293	HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural	90.3
2rh8_A	338	Anthocyanidin reductase; flavonoids, rossmann fold	90.22
3fbt_A	282	Chorismate mutase and shikimate 5-dehydrogenase fu	90.21
2gcg_A	330	Glyoxylate reductase/hydroxypyruvate reductase; NA	90.14
3rui_A	340	Ubiquitin-like modifier-activating enzyme ATG7; au	90.11
3ktd_A	341	Prephenate dehydrogenase; structural genomics, joi	90.04
4a26_A	300	Putative C-1-tetrahydrofolate synthase, cytoplasm;	90.0
2ew2_A	316	2-dehydropantoate 2-reductase, putative; alpha-str	89.97
1edz_A	320	5,10-methylenetetrahydrofolate dehydrogenase; nucl	89.96
1bg6_A	359	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L	89.93

>4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli}

Probab=100.00  E-value=1.6e-42  Score=318.23  Aligned_cols=247  Identities=19%  Similarity=0.314  Sum_probs=223.3

Q ss_pred             CCcceEEecCCCCC-------CCCCCCCCCCCCCCcEEEEeeeeecChhhHHHHcCCCCCCCCCCCcCCCceeEEEEEEc
Q psy1959          11 NSSDLLLYNGSGDA-------KPTLPLVPGFEFSGTIIEKKMMTRINSSDLLLYNGSGDAKPTLPLVPGFEFSGTVIEVA   83 (296)
Q Consensus        11 ~~~~~~~~~~~~~~-------~~~p~~~~~~~~~~evlvkv~~~~i~~~D~~~~~g~~~~~~~~p~~~G~e~~G~V~~v~   83 (296)
                      .+||++++++++.+       .|.|+|.++     ||+|||.+++||++|++.+.|.++....+|.++|||++|+|+++ 
T Consensus        27 ~~MkA~~~~~~g~~~~l~~~~~~~P~~~~~-----eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~i~G~E~~G~V~~v-  100 (353)
T 4dup_A           27 QEMRFVDLKSFGGPDVMVIGKRPLPVAGEG-----EVLVRAEAIGVNRPDIAQRQGSYPPPKDASPILGLELSGEIVGV-  100 (353)
T ss_dssp             SSEEEEEESSSSSGGGEEEEEECCCCCCTT-----EEEEEEEEEEECHHHHHHHTTSSCCCTTSCSSSCCEEEEEEEEE-
T ss_pred             hheeEEEEccCCCccceEEEeccCCCCCCC-----EEEEEEEEEecCHHHHHHhCCCCCCCCCCCCccccccEEEEEEE-
Confidence            36999999986643       678888899     99999999999999999999988776678999999999999999 


Q ss_pred             cCCCCCCCCCCCCCCCCCCCEEEEecCCCCCcccceEeeeCCceEECCCCCCHHHHhhhccHHHHHHHHHHHHcCCCCCc
Q psy1959          84 DTKSSSTEEDDEEDVLQVGDKVLALNKELLHGFSDQCVVHTNDVFKIPEKMTFEHAASLADSYSTAQIVFSRHAKLKEKQ  163 (296)
Q Consensus        84 ~~~~~~~~~g~~v~~~~~Gd~V~~~~~~~~g~~~~~~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~  163 (296)
                               |++|++|++||||+++..  .|+|+||+++|++.++++|++++++++|+|+++++|||+++.+.+++++|+
T Consensus       101 ---------G~~v~~~~vGdrV~~~~~--~G~~aey~~v~~~~~~~~P~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~  169 (353)
T 4dup_A          101 ---------GPGVSGYAVGDKVCGLAN--GGAYAEYCLLPAGQILPFPKGYDAVKAAALPETFFTVWANLFQMAGLTEGE  169 (353)
T ss_dssp             ---------CTTCCSCCTTCEEEEECS--SCCSBSEEEEEGGGEEECCTTCCHHHHHTSHHHHHHHHHHHTTTTCCCTTC
T ss_pred             ---------CCCCCCCCCCCEEEEecC--CCceeeEEEEcHHHcEeCCCCCCHHHHhhhhhHHHHHHHHHHHhcCCCCCC
Confidence                     999999999999999865  699999999999999999999999999999999999999998889999999


Q ss_pred             EEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCcEEEEcCCchhHHHHHHHHhCCCcccEEEECCCCc
Q psy1959         164 TVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNKVLEVSGGKYANVVFEAVGGE  243 (296)
Q Consensus       164 ~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~g~d~vld~~g~~  243 (296)
                      +|+|+|++|++|++++|+| +..|++|++++++++++++++++|++.++++++ .++.+.+.+.+ +.++|++|||+|++
T Consensus       170 ~VlV~Gg~g~iG~~~~~~a-~~~Ga~Vi~~~~~~~~~~~~~~lGa~~~~~~~~-~~~~~~~~~~~-~~g~Dvvid~~g~~  246 (353)
T 4dup_A          170 SVLIHGGTSGIGTTAIQLA-RAFGAEVYATAGSTGKCEACERLGAKRGINYRS-EDFAAVIKAET-GQGVDIILDMIGAA  246 (353)
T ss_dssp             EEEESSTTSHHHHHHHHHH-HHTTCEEEEEESSHHHHHHHHHHTCSEEEETTT-SCHHHHHHHHH-SSCEEEEEESCCGG
T ss_pred             EEEEEcCCCHHHHHHHHHH-HHcCCEEEEEeCCHHHHHHHHhcCCCEEEeCCc-hHHHHHHHHHh-CCCceEEEECCCHH
Confidence            9999988999999999999 678999999999999999999999999999987 78888899888 77999999999999


Q ss_pred             cHHHHHHHhhccCceEE------------eecccceeeeeEEecccc
Q psy1959         244 DKTDLIRQKGAWAALTF------------TNEKSLVNKVLEVSGGKY  278 (296)
Q Consensus       244 ~~~~~~~~lg~~~g~~~------------~~~~~~~~k~~~i~g~~~  278 (296)
                      .+..+++++ +++|++.            ++...++.|++++.|++.
T Consensus       247 ~~~~~~~~l-~~~G~iv~~g~~~~~~~~~~~~~~~~~~~~~i~g~~~  292 (353)
T 4dup_A          247 YFERNIASL-AKDGCLSIIAFLGGAVAEKVNLSPIMVKRLTVTGSTM  292 (353)
T ss_dssp             GHHHHHHTE-EEEEEEEECCCTTCSEEEEEECHHHHHTTCEEEECCS
T ss_pred             HHHHHHHHh-ccCCEEEEEEecCCCcccCCCHHHHHhcCceEEEEec
Confidence            999999999 7777652            333455678888888764

>4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus}

Probab=100.00  E-value=2.9e-42  Score=315.28  Aligned_cols=246  Identities=25%  Similarity=0.399  Sum_probs=220.1

Q ss_pred             CcceEEecCCCCC-------CCCCCCCCCCCCCCcEEEEeeeeecChhhHHHHcCCCCCCCCCCCcCCCceeEEEEEEcc
Q psy1959          12 SSDLLLYNGSGDA-------KPTLPLVPGFEFSGTIIEKKMMTRINSSDLLLYNGSGDAKPTLPLVPGFEFSGTVIEVAD   84 (296)
Q Consensus        12 ~~~~~~~~~~~~~-------~~~p~~~~~~~~~~evlvkv~~~~i~~~D~~~~~g~~~~~~~~p~~~G~e~~G~V~~v~~   84 (296)
                      +||++++++.+..       .|.|+|.++     ||||||.+++||++|++.+.|.++....+|.++|||++|+|+++  
T Consensus        21 ~MkA~~~~~~g~~~~l~~~~~~~P~~~~~-----eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~v~G~E~~G~V~~v--   93 (342)
T 4eye_A           21 SMKAIQAQSLSGPEGLVYTDVETPGAGPN-----VVVVDVKAAGVCFPDYLMTKGEYQLKMEPPFVPGIETAGVVRSA--   93 (342)
T ss_dssp             EEEEEEECSSSGGGGEEEEEEECCCCCTT-----CEEEEEEEEECCHHHHHHHTTCSSSCCCSSBCCCSEEEEEEEEC--
T ss_pred             ceEEEEEecCCCCceeEEEeCCCCCCCCC-----EEEEEEEEEecCHHHHHHhcCCCCCCCCCCCccceeEEEEEEEE--
Confidence            6899998875543       678888899     99999999999999999999988766678999999999999999  


Q ss_pred             CCCCCCCCCCCCCCCCCCCEEEEecCCCCCcccceEeeeCCceEECCCCCCHHHHhhhccHHHHHHHHHHHHcCCCCCcE
Q psy1959          85 TKSSSTEEDDEEDVLQVGDKVLALNKELLHGFSDQCVVHTNDVFKIPEKMTFEHAASLADSYSTAQIVFSRHAKLKEKQT  164 (296)
Q Consensus        85 ~~~~~~~~g~~v~~~~~Gd~V~~~~~~~~g~~~~~~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~  164 (296)
                              |++++ |++||||+++..  .|+|+||++++++.++++|++++++++|+++++++|||+++.+.+++++|++
T Consensus        94 --------G~~v~-~~vGDrV~~~~~--~G~~aey~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~  162 (342)
T 4eye_A           94 --------PEGSG-IKPGDRVMAFNF--IGGYAERVAVAPSNILPTPPQLDDAEAVALIANYHTMYFAYARRGQLRAGET  162 (342)
T ss_dssp             --------CTTSS-CCTTCEEEEECS--SCCSBSEEEECGGGEEECCTTSCHHHHHHHTTHHHHHHHHHHTTSCCCTTCE
T ss_pred             --------CCCCC-CCCCCEEEEecC--CCcceEEEEEcHHHeEECCCCCCHHHHHHhhhHHHHHHHHHHHhcCCCCCCE
Confidence                    99999 999999999875  6999999999999999999999999999999999999999988999999999


Q ss_pred             EEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCcEEEEcCCchhHHHHHHHHhCCCcccEEEECCCCcc
Q psy1959         165 VLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNKVLEVSGGKYANVVFEAVGGED  244 (296)
Q Consensus       165 vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~g~d~vld~~g~~~  244 (296)
                      |+|+|++|++|++++|+| +..|++|++++++++++++++++|++.+++++  .++.+.+++.++++++|++|||+|++.
T Consensus       163 VlV~Gasg~iG~~~~~~a-~~~Ga~Vi~~~~~~~~~~~~~~~ga~~v~~~~--~~~~~~v~~~~~~~g~Dvvid~~g~~~  239 (342)
T 4eye_A          163 VLVLGAAGGIGTAAIQIA-KGMGAKVIAVVNRTAATEFVKSVGADIVLPLE--EGWAKAVREATGGAGVDMVVDPIGGPA  239 (342)
T ss_dssp             EEESSTTSHHHHHHHHHH-HHTTCEEEEEESSGGGHHHHHHHTCSEEEESS--TTHHHHHHHHTTTSCEEEEEESCC--C
T ss_pred             EEEECCCCHHHHHHHHHH-HHcCCEEEEEeCCHHHHHHHHhcCCcEEecCc--hhHHHHHHHHhCCCCceEEEECCchhH
Confidence            999999999999999999 67899999999999999999999999998886  578888999988889999999999999


Q ss_pred             HHHHHHHhhccCceEEe-----------ecccceeeeeEEeccccc
Q psy1959         245 KTDLIRQKGAWAALTFT-----------NEKSLVNKVLEVSGGKYA  279 (296)
Q Consensus       245 ~~~~~~~lg~~~g~~~~-----------~~~~~~~k~~~i~g~~~~  279 (296)
                      +..+++++ +++|++..           +...++.|++++.|++..
T Consensus       240 ~~~~~~~l-~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~i~g~~~~  284 (342)
T 4eye_A          240 FDDAVRTL-ASEGRLLVVGFAAGGIPTIKVNRLLLRNASLIGVAWG  284 (342)
T ss_dssp             HHHHHHTE-EEEEEEEEC----------CCCCGGGTTCEEEECCHH
T ss_pred             HHHHHHhh-cCCCEEEEEEccCCCCCccCHHHHhhcCCEEEEEehh
Confidence            99999999 77776632           233567888999988743

>3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021}

Probab=100.00  E-value=5.1e-42  Score=316.11  Aligned_cols=247  Identities=21%  Similarity=0.228  Sum_probs=220.0

Q ss_pred             CcceEEecCCC--CC----CCCCCCCCCCCCCCcEEEEeeeeecChhhHHHHcCCCCCCCCCCCcCCCceeEEEEEEccC
Q psy1959          12 SSDLLLYNGSG--DA----KPTLPLVPGFEFSGTIIEKKMMTRINSSDLLLYNGSGDAKPTLPLVPGFEFSGTVIEVADT   85 (296)
Q Consensus        12 ~~~~~~~~~~~--~~----~~~p~~~~~~~~~~evlvkv~~~~i~~~D~~~~~g~~~~~~~~p~~~G~e~~G~V~~v~~~   85 (296)
                      +|+++++++++  ..    .|.|+|.++     ||||||.+++||++|++++.|.++....+|.++|||++|+|+++   
T Consensus        27 ~mkA~~~~~~~~~~l~~~e~p~P~~~~~-----eVlVkv~a~gi~~~D~~~~~g~~~~~~~~P~v~GhE~~G~V~~v---   98 (363)
T 3uog_A           27 WMQEWSTETVAPHDLKLAERPVPEAGEH-----DIIVRTLAVSLNYRDKLVLETGMGLDLAFPFVPASDMSGVVEAV---   98 (363)
T ss_dssp             EEEEEEBSCTTTTCCEEEEEECCCCCTT-----EEEEEEEEEECCHHHHHHHHHCTTCCCCSSBCCCCEEEEEEEEE---
T ss_pred             hhEEEEEccCCCCCcEEEeeeCCCCCCC-----EEEEEEEEEecCHHHHHHhcCCCCCCCCCCcCcccceEEEEEEE---
Confidence            59999999653  33    678888999     99999999999999999999987765678999999999999999   


Q ss_pred             CCCCCCCCCCCCCCCCCCEEEEecC----------------------CCCCcccceEeeeCCceEECCCCCCHHHHhhhc
Q psy1959          86 KSSSTEEDDEEDVLQVGDKVLALNK----------------------ELLHGFSDQCVVHTNDVFKIPEKMTFEHAASLA  143 (296)
Q Consensus        86 ~~~~~~~g~~v~~~~~Gd~V~~~~~----------------------~~~g~~~~~~~v~~~~~~~iP~~~~~~~aa~l~  143 (296)
                             |++|++|++||||++...                      ..+|+|+||+++|++.++++|+++++++||+++
T Consensus        99 -------G~~v~~~~vGDrV~~~~~~~c~~g~~~c~~~~~~~~~~g~~~~G~~aey~~v~~~~~~~iP~~~~~~~aa~l~  171 (363)
T 3uog_A           99 -------GKSVTRFRPGDRVISTFAPGWLDGLRPGTGRTPAYETLGGAHPGVLSEYVVLPEGWFVAAPKSLDAAEASTLP  171 (363)
T ss_dssp             -------CTTCCSCCTTCEEEECSSTTCCSSSCCSCSSCCCCCCTTTTSCCCCBSEEEEEGGGEEECCTTSCHHHHHTTT
T ss_pred             -------CCCCCCCCCCCEEEEeccccccccccccccccccccccCcCCCCcceeEEEechHHeEECCCCCCHHHHhhcc
Confidence                   999999999999998621                      135999999999999999999999999999999


Q ss_pred             cHHHHHHHHHHHHcCCCCCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCcEEEEcCCchhHHHH
Q psy1959         144 DSYSTAQIVFSRHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNK  223 (296)
Q Consensus       144 ~~~~ta~~~l~~~~~~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  223 (296)
                      .++.|||+++.+.+++++|++|+|+| +|++|++++|+| +..|++|++++++++++++++++|++.+++... .++.+.
T Consensus       172 ~~~~ta~~al~~~~~~~~g~~VlV~G-~G~vG~~a~qla-~~~Ga~Vi~~~~~~~~~~~~~~lGa~~vi~~~~-~~~~~~  248 (363)
T 3uog_A          172 CAGLTAWFALVEKGHLRAGDRVVVQG-TGGVALFGLQIA-KATGAEVIVTSSSREKLDRAFALGADHGINRLE-EDWVER  248 (363)
T ss_dssp             THHHHHHHHHTTTTCCCTTCEEEEES-SBHHHHHHHHHH-HHTTCEEEEEESCHHHHHHHHHHTCSEEEETTT-SCHHHH
T ss_pred             cHHHHHHHHHHHhcCCCCCCEEEEEC-CCHHHHHHHHHH-HHcCCEEEEEecCchhHHHHHHcCCCEEEcCCc-ccHHHH
Confidence            99999999998889999999999999 699999999999 678999999999999999999999999998544 688899


Q ss_pred             HHHHhCCCcccEEEECCCCccHHHHHHHhhccCceEEe-----------ecccceeeeeEEeccc
Q psy1959         224 VLEVSGGKYANVVFEAVGGEDKTDLIRQKGAWAALTFT-----------NEKSLVNKVLEVSGGK  277 (296)
Q Consensus       224 i~~~~~~~g~d~vld~~g~~~~~~~~~~lg~~~g~~~~-----------~~~~~~~k~~~i~g~~  277 (296)
                      +++.++++++|++|||+|++.+..+++++ +++|++..           +...++.|++++.|++
T Consensus       249 v~~~~~g~g~D~vid~~g~~~~~~~~~~l-~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~i~g~~  312 (363)
T 3uog_A          249 VYALTGDRGADHILEIAGGAGLGQSLKAV-APDGRISVIGVLEGFEVSGPVGPLLLKSPVVQGIS  312 (363)
T ss_dssp             HHHHHTTCCEEEEEEETTSSCHHHHHHHE-EEEEEEEEECCCSSCEECCBTTHHHHTCCEEEECC
T ss_pred             HHHHhCCCCceEEEECCChHHHHHHHHHh-hcCCEEEEEecCCCcccCcCHHHHHhCCcEEEEEe
Confidence            99999888999999999999999999999 77776632           2234567888888876

>3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A*

Probab=100.00  E-value=2.7e-41  Score=307.74  Aligned_cols=243  Identities=21%  Similarity=0.277  Sum_probs=219.8

Q ss_pred             CcceEEecCCCCC-------CCCCCCCCCCCCCCcEEEEeeeeecChhhHHHHcCCCCCCCCCCCcCCCceeEEEEEEcc
Q psy1959          12 SSDLLLYNGSGDA-------KPTLPLVPGFEFSGTIIEKKMMTRINSSDLLLYNGSGDAKPTLPLVPGFEFSGTVIEVAD   84 (296)
Q Consensus        12 ~~~~~~~~~~~~~-------~~~p~~~~~~~~~~evlvkv~~~~i~~~D~~~~~g~~~~~~~~p~~~G~e~~G~V~~v~~   84 (296)
                      +||+++++++++.       .|.|+|.++     ||||||.+++||++|++.+.|.++  ..+|.++|||++|+|+++  
T Consensus         8 ~mka~~~~~~g~~~~l~~~~~~~P~~~~~-----eVlVkv~a~gi~~~D~~~~~G~~~--~~~P~i~G~e~~G~V~~v--   78 (334)
T 3qwb_A            8 QQKVILIDEIGGYDVIKYEDYPVPSISEE-----ELLIKNKYTGVNYIESYFRKGIYP--CEKPYVLGREASGTVVAK--   78 (334)
T ss_dssp             EEEEEEESSSSSGGGEEEEEEECCCCCTT-----EEEEEEEEEECCTTHHHHHHTSSC--CCSSEECCSEEEEEEEEE--
T ss_pred             heEEEEEecCCCCceeEEEeccCCCCCCC-----EEEEEEEEEecCHHHHHHHCCCCC--CCCCCccccceEEEEEEE--
Confidence            6899999987763       677888899     999999999999999999999776  357999999999999999  


Q ss_pred             CCCCCCCCCCCCCCCCCCCEEEEecCCCCCcccceEeee-CCceEECCCCCCHHH---HhhhccHHHHHHHHHHHHcCCC
Q psy1959          85 TKSSSTEEDDEEDVLQVGDKVLALNKELLHGFSDQCVVH-TNDVFKIPEKMTFEH---AASLADSYSTAQIVFSRHAKLK  160 (296)
Q Consensus        85 ~~~~~~~~g~~v~~~~~Gd~V~~~~~~~~g~~~~~~~v~-~~~~~~iP~~~~~~~---aa~l~~~~~ta~~~l~~~~~~~  160 (296)
                              |+++++|++||||+++..   |+|+||++++ ++.++++|+++++++   +|+++..+.+||+++.+..+++
T Consensus        79 --------G~~v~~~~~GdrV~~~~~---G~~aey~~v~~~~~~~~~P~~~~~~~~~~aa~~~~~~~ta~~~l~~~~~~~  147 (334)
T 3qwb_A           79 --------GKGVTNFEVGDQVAYISN---STFAQYSKISSQGPVMKLPKGTSDEELKLYAAGLLQVLTALSFTNEAYHVK  147 (334)
T ss_dssp             --------CTTCCSCCTTCEEEEECS---SCSBSEEEEETTSSEEECCTTCCHHHHHHHHHHHHHHHHHHHHHHTTSCCC
T ss_pred             --------CCCCCCCCCCCEEEEeeC---CcceEEEEecCcceEEECCCCCCHHHhhhhhhhhhHHHHHHHHHHHhccCC
Confidence                    999999999999998865   9999999999 999999999999999   8889999999999998888999


Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCcEEEEcCCchhHHHHHHHHhCCCcccEEEECC
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNKVLEVSGGKYANVVFEAV  240 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~g~d~vld~~  240 (296)
                      +|++|+|+|++|++|++++|+| +..|++|++++++++++++++++|++.++++++ .++.+.+.+.+++.++|++|||+
T Consensus       148 ~g~~vlV~Ga~g~iG~~~~~~a-~~~Ga~Vi~~~~~~~~~~~~~~~ga~~~~~~~~-~~~~~~~~~~~~~~g~D~vid~~  225 (334)
T 3qwb_A          148 KGDYVLLFAAAGGVGLILNQLL-KMKGAHTIAVASTDEKLKIAKEYGAEYLINASK-EDILRQVLKFTNGKGVDASFDSV  225 (334)
T ss_dssp             TTCEEEESSTTBHHHHHHHHHH-HHTTCEEEEEESSHHHHHHHHHTTCSEEEETTT-SCHHHHHHHHTTTSCEEEEEECC
T ss_pred             CCCEEEEECCCCHHHHHHHHHH-HHCCCEEEEEeCCHHHHHHHHHcCCcEEEeCCC-chHHHHHHHHhCCCCceEEEECC
Confidence            9999999998899999999999 678999999999999999999999999999987 78889999999888999999999


Q ss_pred             CCccHHHHHHHhhccCceEEe-----------ecccceeeeeEEeccc
Q psy1959         241 GGEDKTDLIRQKGAWAALTFT-----------NEKSLVNKVLEVSGGK  277 (296)
Q Consensus       241 g~~~~~~~~~~lg~~~g~~~~-----------~~~~~~~k~~~i~g~~  277 (296)
                      |++.+..+++++ +++|++..           +...+..|++++.+.+
T Consensus       226 g~~~~~~~~~~l-~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~~~~~~  272 (334)
T 3qwb_A          226 GKDTFEISLAAL-KRKGVFVSFGNASGLIPPFSITRLSPKNITLVRPQ  272 (334)
T ss_dssp             GGGGHHHHHHHE-EEEEEEEECCCTTCCCCCBCGGGGTTTTCEEECCC
T ss_pred             ChHHHHHHHHHh-ccCCEEEEEcCCCCCCCCcchhhhhhCceEEEEEE
Confidence            999999999999 77777633           2335667888888765

>3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis}

Probab=100.00  E-value=1.9e-41  Score=309.57  Aligned_cols=230  Identities=23%  Similarity=0.325  Sum_probs=211.7

Q ss_pred             CcceEEecCCCCC--------CCCCCCCCCCCCCCcEEEEeeeeecChhhHHHHcCCCCCCCCCCCcCCCceeEEEEEEc
Q psy1959          12 SSDLLLYNGSGDA--------KPTLPLVPGFEFSGTIIEKKMMTRINSSDLLLYNGSGDAKPTLPLVPGFEFSGTVIEVA   83 (296)
Q Consensus        12 ~~~~~~~~~~~~~--------~~~p~~~~~~~~~~evlvkv~~~~i~~~D~~~~~g~~~~~~~~p~~~G~e~~G~V~~v~   83 (296)
                      +||++++++++++        .|.|.|.++     ||+|||.+++||++|++.+.|.++....+|.++|||++|+|+++ 
T Consensus         4 ~mka~~~~~~g~p~~~l~~~~~~~P~~~~~-----eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~i~G~E~~G~V~~v-   77 (340)
T 3gms_A            4 HGKLIQFHKFGNPKDVLQVEYKNIEPLKDN-----EVFVRMLVRPINPSDLIPITGAYAHRIPLPNIPGYEGVGIVENV-   77 (340)
T ss_dssp             EEEEEEESSCSCHHHHEEEEEEECCCCCTT-----EEEEEEEEEECCHHHHGGGGTTTTTTSCSSBCCCSCCEEEEEEE-
T ss_pred             ccEEEEEecCCCchheEEEEecCCCCCCCC-----EEEEEEEEecCCHHHHHHhcCCCCCCCCCCCcCCcceEEEEEEe-
Confidence            5888898887762        678888899     99999999999999999999988766688999999999999999 


Q ss_pred             cCCCCCCCCCCCCCCCCCCCEEEEecCCCCCcccceEeeeCCceEECCCCCCHHHHhhhccHHHHHHHHHHHHcCCCCCc
Q psy1959          84 DTKSSSTEEDDEEDVLQVGDKVLALNKELLHGFSDQCVVHTNDVFKIPEKMTFEHAASLADSYSTAQIVFSRHAKLKEKQ  163 (296)
Q Consensus        84 ~~~~~~~~~g~~v~~~~~Gd~V~~~~~~~~g~~~~~~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~  163 (296)
                               |++|++|++||||+++..  .|+|+||+++|+++++++|+++++++||+++..++|||+++.+.+++++|+
T Consensus        78 ---------G~~v~~~~vGdrV~~~~~--~G~~aey~~v~~~~~~~vP~~l~~~~aa~l~~~~~ta~~~~~~~~~~~~g~  146 (340)
T 3gms_A           78 ---------GAFVSRELIGKRVLPLRG--EGTWQEYVKTSADFVVPIPDSIDDFTAAQMYINPLTAWVTCTETLNLQRND  146 (340)
T ss_dssp             ---------CTTSCGGGTTCEEEECSS--SCSSBSEEEEEGGGEEECCTTSCHHHHTTSSHHHHHHHHHHHTTSCCCTTC
T ss_pred             ---------CCCCCCCCCCCEEEecCC--CccceeEEEcCHHHeEECCCCCCHHHHhhhcchHHHHHHHHHHhcccCCCC
Confidence                     999999999999998755  699999999999999999999999999999999999999998899999999


Q ss_pred             EEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCcEEEEcCCchhHHHHHHHHhCCCcccEEEECCCCc
Q psy1959         164 TVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNKVLEVSGGKYANVVFEAVGGE  243 (296)
Q Consensus       164 ~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~g~d~vld~~g~~  243 (296)
                      +|+|+|++|++|++++|+| +..|++|+++++++++++.++++|++.++++.+ .++.+.+.+.+++.++|++|||+|++
T Consensus       147 ~VlV~Ga~g~iG~~~~~~a-~~~Ga~Vi~~~~~~~~~~~~~~lga~~~~~~~~-~~~~~~~~~~~~~~g~Dvvid~~g~~  224 (340)
T 3gms_A          147 VLLVNACGSAIGHLFAQLS-QILNFRLIAVTRNNKHTEELLRLGAAYVIDTST-APLYETVMELTNGIGADAAIDSIGGP  224 (340)
T ss_dssp             EEEESSTTSHHHHHHHHHH-HHHTCEEEEEESSSTTHHHHHHHTCSEEEETTT-SCHHHHHHHHTTTSCEEEEEESSCHH
T ss_pred             EEEEeCCccHHHHHHHHHH-HHcCCEEEEEeCCHHHHHHHHhCCCcEEEeCCc-ccHHHHHHHHhCCCCCcEEEECCCCh
Confidence            9999999889999999999 668999999999999999999999999999887 78889999999888999999999998


Q ss_pred             cHHHHHHHhhccCceEEe
Q psy1959         244 DKTDLIRQKGAWAALTFT  261 (296)
Q Consensus       244 ~~~~~~~~lg~~~g~~~~  261 (296)
                      ....+++++ +++|++..
T Consensus       225 ~~~~~~~~l-~~~G~iv~  241 (340)
T 3gms_A          225 DGNELAFSL-RPNGHFLT  241 (340)
T ss_dssp             HHHHHHHTE-EEEEEEEE
T ss_pred             hHHHHHHHh-cCCCEEEE
Confidence            777888999 78887744

>4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A*

Probab=100.00  E-value=4.6e-41  Score=307.58  Aligned_cols=244  Identities=20%  Similarity=0.223  Sum_probs=215.9

Q ss_pred             cceEEecCCCCC------CCCCCCCCCCCCCCcEEEEeeeeecChhhHHHHcCCCCCCCCCCCcCCCceeEEEEEEccCC
Q psy1959          13 SDLLLYNGSGDA------KPTLPLVPGFEFSGTIIEKKMMTRINSSDLLLYNGSGDAKPTLPLVPGFEFSGTVIEVADTK   86 (296)
Q Consensus        13 ~~~~~~~~~~~~------~~~p~~~~~~~~~~evlvkv~~~~i~~~D~~~~~g~~~~~~~~p~~~G~e~~G~V~~v~~~~   86 (296)
                      |||+++....+.      .|.|+|+|+     ||||||.|+|||++|+++++|.++.  .+|.++|||++|+|+++    
T Consensus         1 MKA~v~~~~~~~~~~l~e~~~P~~~p~-----eVLVkv~a~gic~~D~~~~~G~~~~--~~p~i~GhE~aG~V~~v----   69 (348)
T 4eez_A            1 MKAAVVRHNPDGYADLVEKELRAIKPN-----EALLDMEYCGVCHTDLHVAAGDFGN--KAGTVLGHEGIGIVKEI----   69 (348)
T ss_dssp             CEEEEECSSCCSSEEEEECCCCCCCTT-----EEEEEEEEEECCHHHHHHHTTTTCC--CTTCBCCSEEEEEEEEE----
T ss_pred             CeEEEEEcCCCCcEEEEEeECCCCCCC-----EEEEEEEEEEECHHHHHHhcCCCCC--CCCcccceeEEEEEEEE----
Confidence            788887654332      788889999     9999999999999999999998764  57999999999999999    


Q ss_pred             CCCCCCCCCCCCCCCCCEEEEecC--------------------------CCCCcccceEeeeCCceEECCCCCCHHHHh
Q psy1959          87 SSSTEEDDEEDVLQVGDKVLALNK--------------------------ELLHGFSDQCVVHTNDVFKIPEKMTFEHAA  140 (296)
Q Consensus        87 ~~~~~~g~~v~~~~~Gd~V~~~~~--------------------------~~~g~~~~~~~v~~~~~~~iP~~~~~~~aa  140 (296)
                            |++|++|++||||+....                          ..+|+|+||+.++++.++++|++++++++|
T Consensus        70 ------G~~V~~~~~GdrV~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~~ae~~~~~~~~~~~iP~~~~~~~aa  143 (348)
T 4eez_A           70 ------GADVSSLQVGDRVSVAWFFEGCGHCEYCVSGNETFCREVKNAGYSVDGGMAEEAIVVADYAVKVPDGLDPIEAS  143 (348)
T ss_dssp             ------CTTCCSCCTTCEEEEESEEECCSSSHHHHTTCGGGCTTCEEBTTTBCCSSBSEEEEEGGGSCBCCTTSCHHHHH
T ss_pred             ------CceeeecccCCeEeecccccccCccccccCCcccccccccccccccCCcceeeccccccceeecCCCCCHHHHh
Confidence                  999999999999986321                          235999999999999999999999999999


Q ss_pred             hhccHHHHHHHHHHHHcCCCCCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCcEEEEcCCchhH
Q psy1959         141 SLADSYSTAQIVFSRHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSL  220 (296)
Q Consensus       141 ~l~~~~~ta~~~l~~~~~~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  220 (296)
                      +++.++.|||+++ +.+++++|++|+|+|+ |++|.+++|+|++..+++|++++++++|+++++++|++.++++++ .++
T Consensus       144 ~l~~~~~ta~~~l-~~~~~~~g~~VlV~Ga-G~~g~~a~~~a~~~~g~~Vi~~~~~~~r~~~~~~~Ga~~~i~~~~-~~~  220 (348)
T 4eez_A          144 SITCAGVTTYKAI-KVSGVKPGDWQVIFGA-GGLGNLAIQYAKNVFGAKVIAVDINQDKLNLAKKIGADVTINSGD-VNP  220 (348)
T ss_dssp             HHHHHHHHHHHHH-HHHTCCTTCEEEEECC-SHHHHHHHHHHHHTSCCEEEEEESCHHHHHHHHHTTCSEEEEC-C-CCH
T ss_pred             hcccceeeEEeee-cccCCCCCCEEEEEcC-CCccHHHHHHHHHhCCCEEEEEECcHHHhhhhhhcCCeEEEeCCC-CCH
Confidence            9999999999999 6789999999999997 999999999996667889999999999999999999999999988 788


Q ss_pred             HHHHHHHhCCCcccEEEECCCC-ccHHHHHHHhhccCceE----------EeecccceeeeeEEeccc
Q psy1959         221 VNKVLEVSGGKYANVVFEAVGG-EDKTDLIRQKGAWAALT----------FTNEKSLVNKVLEVSGGK  277 (296)
Q Consensus       221 ~~~i~~~~~~~g~d~vld~~g~-~~~~~~~~~lg~~~g~~----------~~~~~~~~~k~~~i~g~~  277 (296)
                      .+.+++.+++.++|.+++++++ +.+..+++++ +++|++          .++...++.|++++.|++
T Consensus       221 ~~~v~~~t~g~g~d~~~~~~~~~~~~~~~~~~l-~~~G~~v~~g~~~~~~~~~~~~~~~~~~~i~gs~  287 (348)
T 4eez_A          221 VDEIKKITGGLGVQSAIVCAVARIAFEQAVASL-KPMGKMVAVAVPNTEMTLSVPTVVFDGVEVAGSL  287 (348)
T ss_dssp             HHHHHHHTTSSCEEEEEECCSCHHHHHHHHHTE-EEEEEEEECCCCSCEEEECHHHHHHSCCEEEECC
T ss_pred             HHHhhhhcCCCCceEEEEeccCcchhheeheee-cCCceEEEEeccCCCCccCHHHHHhCCeEEEEEe
Confidence            9999999999999999999998 6899999999 777665          344457788999999876

>3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II, alcohol dehydrogenase superf structural genomics; 1.96A {Novosphingobium aromaticivorans}

Probab=100.00  E-value=1.8e-41  Score=310.20  Aligned_cols=246  Identities=21%  Similarity=0.289  Sum_probs=218.9

Q ss_pred             CCcceEEecCCCCC-----CCCCCCCCCCCCCCcEEEEeeeeecChhhHHHHcCCCCC-CCCCCCcCCCceeEEEEEEcc
Q psy1959          11 NSSDLLLYNGSGDA-----KPTLPLVPGFEFSGTIIEKKMMTRINSSDLLLYNGSGDA-KPTLPLVPGFEFSGTVIEVAD   84 (296)
Q Consensus        11 ~~~~~~~~~~~~~~-----~~~p~~~~~~~~~~evlvkv~~~~i~~~D~~~~~g~~~~-~~~~p~~~G~e~~G~V~~v~~   84 (296)
                      .+|+++++.++++.     .|.|+|.++     ||||||.+++||++|++++.|.... ...+|.++|||++|+|+++  
T Consensus         6 ~~mka~~~~~~~~~l~~~~~~~P~~~~~-----eVlVkv~a~gi~~~D~~~~~g~~~~~~~~~P~v~G~E~~G~V~~v--   78 (343)
T 3gaz_A            6 PTMIAAVVEEANGPFVLRKLARPQPAPG-----QVLVQIEASGTNPLDAKIRAGEAPHAQQPLPAILGMDLAGTVVAV--   78 (343)
T ss_dssp             CEEEEEEECSTTCCEEEEEEECCCCCTT-----EEEEEEEEEECCHHHHHHHTTCCGGGCCCSSBCCCCEEEEEEEEE--
T ss_pred             hhheEEEEecCCCceEEEeccCCCCCCC-----EEEEEEEEEEeCHhhHHHhCCCCCCCCCCCCcccCcceEEEEEEE--
Confidence            46999999998873     788888999     9999999999999999999987543 2568999999999999999  


Q ss_pred             CCCCCCCCCCCCCCCCCCCEEEEecCC---CCCcccceEeeeCCceEECCCCCCHHHHhhhccHHHHHHHHHHHHcCCCC
Q psy1959          85 TKSSSTEEDDEEDVLQVGDKVLALNKE---LLHGFSDQCVVHTNDVFKIPEKMTFEHAASLADSYSTAQIVFSRHAKLKE  161 (296)
Q Consensus        85 ~~~~~~~~g~~v~~~~~Gd~V~~~~~~---~~g~~~~~~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~  161 (296)
                              |+++++|++||||+++...   .+|+|+||++++++.++++|+++++++||+++.++.|||+++.+.+++++
T Consensus        79 --------G~~v~~~~vGdrV~~~~~g~~~~~G~~aey~~v~~~~~~~~P~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~  150 (343)
T 3gaz_A           79 --------GPEVDSFRVGDAVFGLTGGVGGLQGTHAQFAAVDARLLASKPAALTMRQASVLPLVFITAWEGLVDRAQVQD  150 (343)
T ss_dssp             --------CTTCCSCCTTCEEEEECCSSTTCCCSSBSEEEEEGGGEEECCTTSCHHHHHTSHHHHHHHHHHHTTTTCCCT
T ss_pred             --------CCCCCCCCCCCEEEEEeCCCCCCCcceeeEEEecHHHeeeCCCCCCHHHHHHhhhhHHHHHHHHHHhcCCCC
Confidence                    9999999999999998632   35999999999999999999999999999999999999999988899999


Q ss_pred             CcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCcEEEEcCCchhHHHHHHHHhCCCcccEEEECCC
Q psy1959         162 KQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNKVLEVSGGKYANVVFEAVG  241 (296)
Q Consensus       162 g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~g~d~vld~~g  241 (296)
                      |++|||+|++|++|++++|+| +..|++|+++ .+++++++++++|++. ++ .+ .++.+.+.+.+++.++|++|||+|
T Consensus       151 g~~VlV~Ga~g~iG~~~~q~a-~~~Ga~Vi~~-~~~~~~~~~~~lGa~~-i~-~~-~~~~~~~~~~~~~~g~D~vid~~g  225 (343)
T 3gaz_A          151 GQTVLIQGGGGGVGHVAIQIA-LARGARVFAT-ARGSDLEYVRDLGATP-ID-AS-REPEDYAAEHTAGQGFDLVYDTLG  225 (343)
T ss_dssp             TCEEEEETTTSHHHHHHHHHH-HHTTCEEEEE-ECHHHHHHHHHHTSEE-EE-TT-SCHHHHHHHHHTTSCEEEEEESSC
T ss_pred             CCEEEEecCCCHHHHHHHHHH-HHCCCEEEEE-eCHHHHHHHHHcCCCE-ec-cC-CCHHHHHHHHhcCCCceEEEECCC
Confidence            999999998899999999999 6789999999 7899999999999988 76 54 678888999998889999999999


Q ss_pred             CccHHHHHHHhhccCceEEe-------ecccceeeeeEEeccc
Q psy1959         242 GEDKTDLIRQKGAWAALTFT-------NEKSLVNKVLEVSGGK  277 (296)
Q Consensus       242 ~~~~~~~~~~lg~~~g~~~~-------~~~~~~~k~~~i~g~~  277 (296)
                      ++.+..+++++ +++|++..       +...+..|++++.|++
T Consensus       226 ~~~~~~~~~~l-~~~G~iv~~g~~~~~~~~~~~~~~~~~~g~~  267 (343)
T 3gaz_A          226 GPVLDASFSAV-KRFGHVVSCLGWGTHKLAPLSFKQATYSGVF  267 (343)
T ss_dssp             THHHHHHHHHE-EEEEEEEESCCCSCCCCHHHHHTTCEEEECC
T ss_pred             cHHHHHHHHHH-hcCCeEEEEcccCccccchhhhcCcEEEEEE
Confidence            99999999999 77777743       2335667888888865

>2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A*

Probab=100.00  E-value=2.6e-41  Score=310.41  Aligned_cols=249  Identities=20%  Similarity=0.269  Sum_probs=219.2

Q ss_pred             ccCCcceEEecCCCCC-------CCCCCCCCCCCCCCcEEEEeeeeecChhhHHHHcCCCCCCCCCCCcCCCceeEEEEE
Q psy1959           9 ALNSSDLLLYNGSGDA-------KPTLPLVPGFEFSGTIIEKKMMTRINSSDLLLYNGSGDAKPTLPLVPGFEFSGTVIE   81 (296)
Q Consensus         9 ~~~~~~~~~~~~~~~~-------~~~p~~~~~~~~~~evlvkv~~~~i~~~D~~~~~g~~~~~~~~p~~~G~e~~G~V~~   81 (296)
                      -+.+||++++++++..       .|.|.|+++     ||+|||.+++||++|++.+.|.++..+.+|.++|||++|+|++
T Consensus        19 ~~~~Mka~~~~~~g~~~~l~~~~~~~P~~~~~-----eVlVkv~a~gi~~~D~~~~~G~~~~~~~~p~v~G~E~~G~V~~   93 (354)
T 2j8z_A           19 YFQSMLAVHFDKPGGPENLYVKEVAKPSPGEG-----EVLLKVAASALNRADLMQRQGQYDPPPGASNILGLEASGHVAE   93 (354)
T ss_dssp             --CEEEEEEESSCSSGGGEEEEEEECCCCCTT-----EEEEEEEEEECCHHHHHHHHTSSCCCTTSCSSSCSEEEEEEEE
T ss_pred             chhheeEEEEccCCCccceEEeecCCCCCCCC-----eEEEEEEEeecCHHHHHHhCCCCCCCCCCCcccceeeEEEEEE
Confidence            3446999999988752       577888889     9999999999999999999998765556799999999999999


Q ss_pred             EccCCCCCCCCCCCC-CCCCCCCEEEEecCCCCCcccceEeeeCCceEECCCCCCHHHHhhhccHHHHHHHHHHHHcCCC
Q psy1959          82 VADTKSSSTEEDDEE-DVLQVGDKVLALNKELLHGFSDQCVVHTNDVFKIPEKMTFEHAASLADSYSTAQIVFSRHAKLK  160 (296)
Q Consensus        82 v~~~~~~~~~~g~~v-~~~~~Gd~V~~~~~~~~g~~~~~~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~l~~~~~~~  160 (296)
                      +          |++| ++|++||||+++..  .|+|+||+++|++.++++|+++++++||+++++++|||+++.+.++++
T Consensus        94 v----------G~~v~~~~~vGdrV~~~~~--~G~~aey~~v~~~~~~~iP~~ls~~~aa~l~~~~~tA~~al~~~~~~~  161 (354)
T 2j8z_A           94 L----------GPGCQGHWKIGDTAMALLP--GGGQAQYVTVPEGLLMPIPEGLTLTQAAAIPEAWLTAFQLLHLVGNVQ  161 (354)
T ss_dssp             E----------CSCC--CCCTTCEEEEECS--SCCSBSEEEEEGGGEEECCTTCCHHHHTTSHHHHHHHHHHHTTTSCCC
T ss_pred             E----------CCCcCCCCCCCCEEEEecC--CCcceeEEEeCHHHcEECCCCCCHHHHHhccchHHHHHHHHHHhcCCC
Confidence            9          9999 99999999999865  599999999999999999999999999999999999999997789999


Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCcEEEEcCCchhHHHHHHHHhCCCcccEEEECC
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNKVLEVSGGKYANVVFEAV  240 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~g~d~vld~~  240 (296)
                      +|++|+|+|++|++|++++|++ +..|++|+++++++++.+.++++|++.++++.+ .++.+.+.+.+++.++|++|||+
T Consensus       162 ~g~~vlV~Ga~ggiG~~~~~~a-~~~Ga~Vi~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~~~~~~~~~~d~vi~~~  239 (354)
T 2j8z_A          162 AGDYVLIHAGLSGVGTAAIQLT-RMAGAIPLVTAGSQKKLQMAEKLGAAAGFNYKK-EDFSEATLKFTKGAGVNLILDCI  239 (354)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHH-HHTTCEEEEEESCHHHHHHHHHHTCSEEEETTT-SCHHHHHHHHTTTSCEEEEEESS
T ss_pred             CCCEEEEECCccHHHHHHHHHH-HHcCCEEEEEeCCHHHHHHHHHcCCcEEEecCC-hHHHHHHHHHhcCCCceEEEECC
Confidence            9999999999999999999999 678999999999999999999999998898877 67888888888777899999999


Q ss_pred             CCccHHHHHHHhhccCceEEee-----------c-ccceeeeeEEeccc
Q psy1959         241 GGEDKTDLIRQKGAWAALTFTN-----------E-KSLVNKVLEVSGGK  277 (296)
Q Consensus       241 g~~~~~~~~~~lg~~~g~~~~~-----------~-~~~~~k~~~i~g~~  277 (296)
                      |++.+..+++++ +++|++..-           . ..++.|++++.|++
T Consensus       240 G~~~~~~~~~~l-~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~~i~g~~  287 (354)
T 2j8z_A          240 GGSYWEKNVNCL-ALDGRWVLYGLMGGGDINGPLFSKLLFKRGSLITSL  287 (354)
T ss_dssp             CGGGHHHHHHHE-EEEEEEEECCCTTCSCCCSCHHHHHHHTTCEEEECC
T ss_pred             CchHHHHHHHhc-cCCCEEEEEeccCCCccCCChhHHHHhCCCEEEEEE
Confidence            999999999999 777776431           1 23456788888875

>3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A*

Probab=100.00  E-value=5.7e-41  Score=304.55  Aligned_cols=229  Identities=27%  Similarity=0.383  Sum_probs=208.6

Q ss_pred             cceEEecCCCCC-------CCCCCCCCCCCCCCcEEEEeeeeecChhhHHHHcCCCCCCCCCCCcCCCceeEEEEEEccC
Q psy1959          13 SDLLLYNGSGDA-------KPTLPLVPGFEFSGTIIEKKMMTRINSSDLLLYNGSGDAKPTLPLVPGFEFSGTVIEVADT   85 (296)
Q Consensus        13 ~~~~~~~~~~~~-------~~~p~~~~~~~~~~evlvkv~~~~i~~~D~~~~~g~~~~~~~~p~~~G~e~~G~V~~v~~~   85 (296)
                      ||++++++++.+       .|.|+|.++     ||+|||.+++||++|++++.|.++. +.+|.++|||++|+|+++   
T Consensus         2 MkA~~~~~~g~~~~l~~~~~~~p~~~~~-----eVlVkv~a~gi~~~D~~~~~g~~~~-~~~p~v~G~e~~G~V~~v---   72 (325)
T 3jyn_A            2 AKRIQFSTVGGPEVLEYVDFEPEAPGPQ-----AVVVRNKAIGLNFIDTYYRSGLYPA-PFLPSGLGAEGAGVVEAV---   72 (325)
T ss_dssp             EEEEEBSSCSSGGGCEEEEECCCCCCTT-----EEEEEEEEEECCHHHHHHHHTSSCC-SSSSBCCCCCEEEEEEEE---
T ss_pred             cEEEEEecCCCcceeEEeecCCCCCCCC-----EEEEEEEEEecCHHHHHHHCCCCCC-CCCCCCCCceeEEEEEEE---
Confidence            677777765543       678888899     9999999999999999999998765 568999999999999999   


Q ss_pred             CCCCCCCCCCCCCCCCCCEEEEecCCCCCcccceEeeeCCceEECCCCCCHHHHhhhccHHHHHHHHHHHHcCCCCCcEE
Q psy1959          86 KSSSTEEDDEEDVLQVGDKVLALNKELLHGFSDQCVVHTNDVFKIPEKMTFEHAASLADSYSTAQIVFSRHAKLKEKQTV  165 (296)
Q Consensus        86 ~~~~~~~g~~v~~~~~Gd~V~~~~~~~~g~~~~~~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~v  165 (296)
                             |+++++|++||||+.... ..|+|+||+++|+++++++|+++++++||+++..+.|||+++.+.+++++|++|
T Consensus        73 -------G~~v~~~~~GdrV~~~~~-~~G~~aey~~v~~~~~~~~P~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~V  144 (325)
T 3jyn_A           73 -------GDEVTRFKVGDRVAYGTG-PLGAYSEVHVLPEANLVKLADSVSFEQAAALMLKGLTVQYLLRQTYQVKPGEII  144 (325)
T ss_dssp             -------CTTCCSCCTTCEEEESSS-SSCCSBSEEEEEGGGEEECCTTSCHHHHHHHHHHHHHHHHHHHTTSCCCTTCEE
T ss_pred             -------CCCCCCCCCCCEEEEecC-CCccccceEEecHHHeEECCCCCCHHHHhhhhhhHHHHHHHHHHhcCCCCCCEE
Confidence                   999999999999998752 259999999999999999999999999999999999999999888999999999


Q ss_pred             EEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCcEEEEcCCchhHHHHHHHHhCCCcccEEEECCCCccH
Q psy1959         166 LVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNKVLEVSGGKYANVVFEAVGGEDK  245 (296)
Q Consensus       166 lI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~g~d~vld~~g~~~~  245 (296)
                      +|+|++|++|++++|+| +..|++|++++++++++++++++|++.++++++ .++.+.+.+.++++++|++|||+|++.+
T Consensus       145 lV~Ga~g~iG~~~~~~a-~~~Ga~Vi~~~~~~~~~~~~~~~Ga~~~~~~~~-~~~~~~~~~~~~~~g~Dvvid~~g~~~~  222 (325)
T 3jyn_A          145 LFHAAAGGVGSLACQWA-KALGAKLIGTVSSPEKAAHAKALGAWETIDYSH-EDVAKRVLELTDGKKCPVVYDGVGQDTW  222 (325)
T ss_dssp             EESSTTSHHHHHHHHHH-HHHTCEEEEEESSHHHHHHHHHHTCSEEEETTT-SCHHHHHHHHTTTCCEEEEEESSCGGGH
T ss_pred             EEEcCCcHHHHHHHHHH-HHCCCEEEEEeCCHHHHHHHHHcCCCEEEeCCC-ccHHHHHHHHhCCCCceEEEECCChHHH
Confidence            99998899999999999 568999999999999999999999999999987 7888999999988899999999999999


Q ss_pred             HHHHHHhhccCceEEe
Q psy1959         246 TDLIRQKGAWAALTFT  261 (296)
Q Consensus       246 ~~~~~~lg~~~g~~~~  261 (296)
                      ..+++++ +++|++..
T Consensus       223 ~~~~~~l-~~~G~iv~  237 (325)
T 3jyn_A          223 LTSLDSV-APRGLVVS  237 (325)
T ss_dssp             HHHHTTE-EEEEEEEE
T ss_pred             HHHHHHh-cCCCEEEE
Confidence            9999999 77777643

>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A*

Probab=100.00  E-value=8.5e-41  Score=305.16  Aligned_cols=244  Identities=23%  Similarity=0.225  Sum_probs=214.4

Q ss_pred             CcceEEecCCCCC-----CCCCCCCCCCCCCCcEEEEeeeeecChhhHHHHcCCCCCCCCCCCcCCCceeEEEEEEccCC
Q psy1959          12 SSDLLLYNGSGDA-----KPTLPLVPGFEFSGTIIEKKMMTRINSSDLLLYNGSGDAKPTLPLVPGFEFSGTVIEVADTK   86 (296)
Q Consensus        12 ~~~~~~~~~~~~~-----~~~p~~~~~~~~~~evlvkv~~~~i~~~D~~~~~g~~~~~~~~p~~~G~e~~G~V~~v~~~~   86 (296)
                      .||++++++++..     .|.|+|.++     ||||||.+++||++|++.+.|.++....+|.++|||++|+|+++    
T Consensus         2 ~MkA~~~~~~g~~l~~~~~~~P~~~~~-----eVlVkv~a~gi~~~D~~~~~g~~~~~~~~P~v~G~E~~G~V~~v----   72 (340)
T 3s2e_A            2 MMKAAVVRAFGAPLTIDEVPVPQPGPG-----QVQVKIEASGVCHTDLHAADGDWPVKPTLPFIPGHEGVGYVSAV----   72 (340)
T ss_dssp             EEEEEEBCSTTSCCEEEEEECCCCCTT-----CEEEEEEEEEECHHHHHHHHTCSSSCCCSSBCCCSEEEEEEEEE----
T ss_pred             ceEEEEEecCCCCCEEEEccCCCCCCC-----eEEEEEEEeccCHHHHHHHcCCCCCCCCCCcccCCcceEEEEEE----
Confidence            3889999887653     678888999     99999999999999999999988766678999999999999999    


Q ss_pred             CCCCCCCCCCCCCCCCCEEEEec--------------------------CCCCCcccceEeeeCCceEECCCCCCHHHHh
Q psy1959          87 SSSTEEDDEEDVLQVGDKVLALN--------------------------KELLHGFSDQCVVHTNDVFKIPEKMTFEHAA  140 (296)
Q Consensus        87 ~~~~~~g~~v~~~~~Gd~V~~~~--------------------------~~~~g~~~~~~~v~~~~~~~iP~~~~~~~aa  140 (296)
                            |+++++|++||||+...                          ...+|+|+||+++|++.++++|++++++++|
T Consensus        73 ------G~~v~~~~vGdrV~~~~~~~~cg~C~~c~~g~~~~c~~~~~~g~~~~G~~aey~~v~~~~~~~iP~~~~~~~aa  146 (340)
T 3s2e_A           73 ------GSGVSRVKEGDRVGVPWLYSACGYCEHCLQGWETLCEKQQNTGYSVNGGYGEYVVADPNYVGLLPDKVGFVEIA  146 (340)
T ss_dssp             ------CSSCCSCCTTCEEEEESEEECCSSSHHHHTTCGGGCTTCEEBTTTBCCSSBSEEEECTTTSEECCTTSCHHHHG
T ss_pred             ------CCCCCcCCCCCEEEecCCCCCCCCChHHhCcCcccCccccccCCCCCCcceeEEEechHHEEECCCCCCHHHhh
Confidence                  99999999999995321                          1235999999999999999999999999999


Q ss_pred             hhccHHHHHHHHHHHHcCCCCCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCcEEEEcCCchhH
Q psy1959         141 SLADSYSTAQIVFSRHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSL  220 (296)
Q Consensus       141 ~l~~~~~ta~~~l~~~~~~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  220 (296)
                      +++.++.|||+++ +..++++|++|+|+|+ |++|++++|+| +..|++|++++++++++++++++|++.++++++ .++
T Consensus       147 ~l~~~~~ta~~~l-~~~~~~~g~~VlV~Ga-G~vG~~a~qla-~~~Ga~Vi~~~~~~~~~~~~~~lGa~~~i~~~~-~~~  222 (340)
T 3s2e_A          147 PILCAGVTVYKGL-KVTDTRPGQWVVISGI-GGLGHVAVQYA-RAMGLRVAAVDIDDAKLNLARRLGAEVAVNARD-TDP  222 (340)
T ss_dssp             GGGTHHHHHHHHH-HTTTCCTTSEEEEECC-STTHHHHHHHH-HHTTCEEEEEESCHHHHHHHHHTTCSEEEETTT-SCH
T ss_pred             cccchhHHHHHHH-HHcCCCCCCEEEEECC-CHHHHHHHHHH-HHCCCeEEEEeCCHHHHHHHHHcCCCEEEeCCC-cCH
Confidence            9999999999999 6789999999999997 99999999999 678999999999999999999999999999987 778


Q ss_pred             HHHHHHHhCCCcccEEEECCCC-ccHHHHHHHhhccCceEEe----------ecccceeeeeEEeccc
Q psy1959         221 VNKVLEVSGGKYANVVFEAVGG-EDKTDLIRQKGAWAALTFT----------NEKSLVNKVLEVSGGK  277 (296)
Q Consensus       221 ~~~i~~~~~~~g~d~vld~~g~-~~~~~~~~~lg~~~g~~~~----------~~~~~~~k~~~i~g~~  277 (296)
                      .+.+++. .+ ++|++||++|+ +.++.+++++ +++|++..          +...++.|++++.|++
T Consensus       223 ~~~~~~~-~g-~~d~vid~~g~~~~~~~~~~~l-~~~G~iv~~G~~~~~~~~~~~~~~~~~~~i~g~~  287 (340)
T 3s2e_A          223 AAWLQKE-IG-GAHGVLVTAVSPKAFSQAIGMV-RRGGTIALNGLPPGDFGTPIFDVVLKGITIRGSI  287 (340)
T ss_dssp             HHHHHHH-HS-SEEEEEESSCCHHHHHHHHHHE-EEEEEEEECSCCSSEEEEEHHHHHHTTCEEEECC
T ss_pred             HHHHHHh-CC-CCCEEEEeCCCHHHHHHHHHHh-ccCCEEEEeCCCCCCCCCCHHHHHhCCeEEEEEe
Confidence            8888884 34 89999999997 7899999999 77776632          3345667888888876

>3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A*

Probab=100.00  E-value=2.6e-40  Score=302.50  Aligned_cols=245  Identities=24%  Similarity=0.269  Sum_probs=214.1

Q ss_pred             cceEEecCCCCC-----CCCCCCCCCCCCCCcEEEEeeeeecChhhHHHHcCCCCC-CCCCCCcCCCceeEEEEEEccCC
Q psy1959          13 SDLLLYNGSGDA-----KPTLPLVPGFEFSGTIIEKKMMTRINSSDLLLYNGSGDA-KPTLPLVPGFEFSGTVIEVADTK   86 (296)
Q Consensus        13 ~~~~~~~~~~~~-----~~~p~~~~~~~~~~evlvkv~~~~i~~~D~~~~~g~~~~-~~~~p~~~G~e~~G~V~~v~~~~   86 (296)
                      ||+++++++++.     .|.|+|.++     ||||||.+++||++|++.+.|.++. ...+|.++|||++|+|+++    
T Consensus         1 MkA~~~~~~g~~l~~~~~~~P~~~~~-----eVlVkv~a~gi~~~D~~~~~g~~~~~~~~~p~i~G~e~~G~V~~v----   71 (345)
T 3jv7_A            1 MKAVQYTEIGSEPVVVDIPTPTPGPG-----EILLKVTAAGLCHSDIFVMDMPAAQYAYGLPLTLGHEGVGTVAEL----   71 (345)
T ss_dssp             CEEEEECSTTSCCEEEECCCCCCCTT-----CEEEEEEEEECCHHHHHHHHSCTTTCCSCSSEECCSEEEEEEEEE----
T ss_pred             CeEEEEcCCCCceEEEEecCCCCCCC-----eEEEEEEEEeeCHHHHHHHcCCCCccCCCCCcccCcccEEEEEEE----
Confidence            788999988873     688888899     9999999999999999999987653 3567999999999999999    


Q ss_pred             CCCCCCCCCCCCCCCCCEEEEecC------------------------------CCCCcccceEeee-CCceEECCCCCC
Q psy1959          87 SSSTEEDDEEDVLQVGDKVLALNK------------------------------ELLHGFSDQCVVH-TNDVFKIPEKMT  135 (296)
Q Consensus        87 ~~~~~~g~~v~~~~~Gd~V~~~~~------------------------------~~~g~~~~~~~v~-~~~~~~iP~~~~  135 (296)
                            |++|++|++||||++...                              ...|+|+||+++| ++.++++|+ ++
T Consensus        72 ------G~~v~~~~vGdrV~~~~~~~cg~C~~c~~g~~~~c~~~~~~~~~~~g~~~~G~~aey~~v~~~~~~~~~p~-~~  144 (345)
T 3jv7_A           72 ------GEGVTGFGVGDAVAVYGPWGCGACHACARGRENYCTRAADLGITPPGLGSPGSMAEYMIVDSARHLVPIGD-LD  144 (345)
T ss_dssp             ------CTTCCSCCTTCEEEECCSCCCSSSHHHHTTCGGGCSSHHHHTCCCBTTTBCCSSBSEEEESCGGGEEECTT-CC
T ss_pred             ------CCCCCCCCCCCEEEEecCCCCCCChHHHCcCcCcCccccccccccCCcCCCceeeEEEEecchhceEeCCC-CC
Confidence                  999999999999998531                              1369999999999 899999999 99


Q ss_pred             HHHHhhhccHHHHHHHHHHH-HcCCCCCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCcEEEEc
Q psy1959         136 FEHAASLADSYSTAQIVFSR-HAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTF  214 (296)
Q Consensus       136 ~~~aa~l~~~~~ta~~~l~~-~~~~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~~~~~~  214 (296)
                      ++++|+|++++.|||+++.+ ..++++|++|+|+|+ |++|++++|+|+...+++|++++++++|+++++++|++.++++
T Consensus       145 ~~~aa~l~~~~~ta~~~l~~~~~~~~~g~~vlv~Ga-G~vG~~a~qla~~~g~~~Vi~~~~~~~~~~~~~~lGa~~~i~~  223 (345)
T 3jv7_A          145 PVAAAPLTDAGLTPYHAISRVLPLLGPGSTAVVIGV-GGLGHVGIQILRAVSAARVIAVDLDDDRLALAREVGADAAVKS  223 (345)
T ss_dssp             HHHHGGGGTTTHHHHHHHHTTGGGCCTTCEEEEECC-SHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHTTCSEEEEC
T ss_pred             HHHhhhhhhhHHHHHHHHHHhccCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCCEEEcC
Confidence            99999999999999999976 458999999999998 9999999999954447899999999999999999999999988


Q ss_pred             CCchhHHHHHHHHhCCCcccEEEECCCCc-cHHHHHHHhhccCceEEeec----------ccceeeeeEEeccc
Q psy1959         215 TNEKSLVNKVLEVSGGKYANVVFEAVGGE-DKTDLIRQKGAWAALTFTNE----------KSLVNKVLEVSGGK  277 (296)
Q Consensus       215 ~~~~~~~~~i~~~~~~~g~d~vld~~g~~-~~~~~~~~lg~~~g~~~~~~----------~~~~~k~~~i~g~~  277 (296)
                      ++  ++.+.+++.++++++|++||++|++ .++.+++++ +++|++..-.          ..++.|++++.|++
T Consensus       224 ~~--~~~~~v~~~t~g~g~d~v~d~~G~~~~~~~~~~~l-~~~G~iv~~G~~~~~~~~~~~~~~~~~~~i~g~~  294 (345)
T 3jv7_A          224 GA--GAADAIRELTGGQGATAVFDFVGAQSTIDTAQQVV-AVDGHISVVGIHAGAHAKVGFFMIPFGASVVTPY  294 (345)
T ss_dssp             ST--THHHHHHHHHGGGCEEEEEESSCCHHHHHHHHHHE-EEEEEEEECSCCTTCCEEESTTTSCTTCEEECCC
T ss_pred             CC--cHHHHHHHHhCCCCCeEEEECCCCHHHHHHHHHHH-hcCCEEEEECCCCCCCCCcCHHHHhCCCEEEEEe
Confidence            64  7788899999888999999999995 899999999 7776663211          25677888888876

>4a27_A Synaptic vesicle membrane protein VAT-1 homolog-L; oxidoreductase; 2.10A {Homo sapiens}

Probab=100.00  E-value=2.6e-41  Score=309.78  Aligned_cols=225  Identities=26%  Similarity=0.406  Sum_probs=197.0

Q ss_pred             CcceEEecCCCCC-------CCCCCCCCCCCCCCcEEEEeeeeecChhhHHHHcCCCCCCCCCCCcCCCceeEEEEEEcc
Q psy1959          12 SSDLLLYNGSGDA-------KPTLPLVPGFEFSGTIIEKKMMTRINSSDLLLYNGSGDAKPTLPLVPGFEFSGTVIEVAD   84 (296)
Q Consensus        12 ~~~~~~~~~~~~~-------~~~p~~~~~~~~~~evlvkv~~~~i~~~D~~~~~g~~~~~~~~p~~~G~e~~G~V~~v~~   84 (296)
                      +||++++++++..       .|.|+|.++     ||+|||.+++||++|++.+.|.++....+|.++|||++|+|+++  
T Consensus         3 ~mka~~~~~~g~~~~l~~~~~~~p~~~~~-----eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~v~G~e~~G~V~~v--   75 (349)
T 4a27_A            3 EMRAVVLAGFGGLNKLRLFRKAMPEPQDG-----ELKIRVKACGLNFIDLMVRQGNIDNPPKTPLVPGFECSGIVEAL--   75 (349)
T ss_dssp             CEEEEEECSSSSGGGEEEEEECCCCCCTT-----EEEEEEEEEEECHHHHHHHHTCSSSCCCSSBCCCSEEEEEEEEE--
T ss_pred             eeEEEEEccCCCcceeEEEecCCCCCCCC-----EEEEEEEEEecCHHHHHHhCCCcCCCCCCCccccceeEEEEEEe--
Confidence            5888999887743       678888899     99999999999999999999988766788999999999999999  


Q ss_pred             CCCCCCCCCCCCCCCCCCCEEEEecCCCCCcccceEeeeCCceEECCCCCCHHHHhhhccHHHHHHHHHHHHcCCCCCcE
Q psy1959          85 TKSSSTEEDDEEDVLQVGDKVLALNKELLHGFSDQCVVHTNDVFKIPEKMTFEHAASLADSYSTAQIVFSRHAKLKEKQT  164 (296)
Q Consensus        85 ~~~~~~~~g~~v~~~~~Gd~V~~~~~~~~g~~~~~~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~  164 (296)
                              |+++++|++||||+++..  .|+|+||++++++.++++|++++++++|+++++++|||+++.+.+++++|++
T Consensus        76 --------G~~v~~~~~GdrV~~~~~--~G~~aey~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~  145 (349)
T 4a27_A           76 --------GDSVKGYEIGDRVMAFVN--YNAWAEVVCTPVEFVYKIPDDMSFSEAAAFPMNFVTAYVMLFEVANLREGMS  145 (349)
T ss_dssp             --------CTTCCSCCTTCEEEEECS--SCCSBSEEEEEGGGEEECCTTSCHHHHHTSHHHHHHHHHHHHTTSCCCTTCE
T ss_pred             --------CCCCCCCCCCCEEEEecC--CCcceEEEEecHHHeEECCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCCE
Confidence                    999999999999999875  6999999999999999999999999999999999999999988899999999


Q ss_pred             EEEEcCCCcHHHHHHHHHHHhC-CCEEEEEeCCcchHHHHHhcCCcEEEEcCCchhHHHHHHHHhCCCcccEEEECCCCc
Q psy1959         165 VLVTAAGGGLGLAAVDMATKIY-KAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNKVLEVSGGKYANVVFEAVGGE  243 (296)
Q Consensus       165 vlI~Ga~g~vG~aa~~la~~~~-g~~Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~g~d~vld~~g~~  243 (296)
                      |+|+|++|++|++++|+| +.. +++|++++ ++++.+.++ +|++.+++ .+ .++.+.+++.+ +.++|++|||+|++
T Consensus       146 VlV~Ga~G~vG~~a~qla-~~~g~~~V~~~~-~~~~~~~~~-~ga~~~~~-~~-~~~~~~~~~~~-~~g~Dvv~d~~g~~  219 (349)
T 4a27_A          146 VLVHSAGGGVGQAVAQLC-STVPNVTVFGTA-STFKHEAIK-DSVTHLFD-RN-ADYVQEVKRIS-AEGVDIVLDCLCGD  219 (349)
T ss_dssp             EEESSTTSHHHHHHHHHH-TTSTTCEEEEEE-CGGGHHHHG-GGSSEEEE-TT-SCHHHHHHHHC-TTCEEEEEEECC--
T ss_pred             EEEEcCCcHHHHHHHHHH-HHcCCcEEEEeC-CHHHHHHHH-cCCcEEEc-CC-ccHHHHHHHhc-CCCceEEEECCCch
Confidence            999999999999999999 556 56888887 677888888 99999988 55 68888888886 46999999999998


Q ss_pred             cHHHHHHHhhccCceEE
Q psy1959         244 DKTDLIRQKGAWAALTF  260 (296)
Q Consensus       244 ~~~~~~~~lg~~~g~~~  260 (296)
                      .+..+++++ +++|++.
T Consensus       220 ~~~~~~~~l-~~~G~~v  235 (349)
T 4a27_A          220 NTGKGLSLL-KPLGTYI  235 (349)
T ss_dssp             -----CTTE-EEEEEEE
T ss_pred             hHHHHHHHh-hcCCEEE
Confidence            789999999 7777764

>3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana}

Probab=100.00  E-value=1.7e-40  Score=307.43  Aligned_cols=229  Identities=20%  Similarity=0.251  Sum_probs=206.7

Q ss_pred             CcceEEecCCCCC-----CCCCCCCCCCCCCCcEEEEeeeeecChhhHHHHcCCCCCCCCCCCcCCCceeEEEEEEccCC
Q psy1959          12 SSDLLLYNGSGDA-----KPTLPLVPGFEFSGTIIEKKMMTRINSSDLLLYNGSGDAKPTLPLVPGFEFSGTVIEVADTK   86 (296)
Q Consensus        12 ~~~~~~~~~~~~~-----~~~p~~~~~~~~~~evlvkv~~~~i~~~D~~~~~g~~~~~~~~p~~~G~e~~G~V~~v~~~~   86 (296)
                      +||+++++++++.     .|.|+|.++     ||||||.+++||++|++.+.|.++. ..+|.++|||++|+|+++    
T Consensus         8 tmkA~v~~~~~~~l~~~~~~~p~~~~~-----eVlVkv~a~gi~~~D~~~~~g~~~~-~~~P~v~GhE~~G~V~~v----   77 (378)
T 3uko_A            8 TCKAAVAYEPNKPLVIEDVQVAPPQAG-----EVRIKILYTALCHTDAYTWSGKDPE-GLFPCILGHEAAGIVESV----   77 (378)
T ss_dssp             EEEEEEBCSTTSCCEEEEEEECCCCTT-----EEEEEEEEEEECHHHHHHHTTCCTT-CCSSBCCCCEEEEEEEEE----
T ss_pred             eeEEEEEecCCCccEEEEecCCCCCCC-----eEEEEEEEeecCHHHHHHhcCCCCC-CCCCccCCccceEEEEEe----
Confidence            6999999998873     678888999     9999999999999999999998653 568999999999999999    


Q ss_pred             CCCCCCCCCCCCCCCCCEEEEecCC-----------------------------------------------CCCcccce
Q psy1959          87 SSSTEEDDEEDVLQVGDKVLALNKE-----------------------------------------------LLHGFSDQ  119 (296)
Q Consensus        87 ~~~~~~g~~v~~~~~Gd~V~~~~~~-----------------------------------------------~~g~~~~~  119 (296)
                            |++|++|++||||++....                                               ..|+|+||
T Consensus        78 ------G~~v~~~~vGdrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~~~~~G~~~~~g~~~~~~~g~~~~~~~~~G~~aey  151 (378)
T 3uko_A           78 ------GEGVTEVQAGDHVIPCYQAECRECKFCKSGKTNLCGKVRSATGVGIMMNDRKSRFSVNGKPIYHFMGTSTFSQY  151 (378)
T ss_dssp             ------CTTCCSCCTTCEEEECSSCCCSSSHHHHHTSCSCCCSSHHHHTTTCCTTTSSCSEEETTEEEBCCTTTCCSBSE
T ss_pred             ------CCCCCcCCCCCEEEEecCCCCCCChhhhCcCcCcCcCcccccccccccccCccccccCCcccccccCCcceEeE
Confidence                  9999999999999875421                                               01699999


Q ss_pred             EeeeCCceEECCCCCCHHHHhhhccHHHHHHHHHHHHcCCCCCcEEEEEcCCCcHHHHHHHHHHHhCCC-EEEEEeCCcc
Q psy1959         120 CVVHTNDVFKIPEKMTFEHAASLADSYSTAQIVFSRHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKA-KVIGVCNSED  198 (296)
Q Consensus       120 ~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~-~Vi~~~~~~~  198 (296)
                      ++++++.++++|+++++++||.+++++.|||+++.+.+++++|++|+|+|+ |++|++++|+| +..|+ +|++++++++
T Consensus       152 ~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~al~~~~~~~~g~~VlV~Ga-G~vG~~a~q~a-~~~Ga~~Vi~~~~~~~  229 (378)
T 3uko_A          152 TVVHDVSVAKIDPTAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSNVAIFGL-GTVGLAVAEGA-KTAGASRIIGIDIDSK  229 (378)
T ss_dssp             EEEEGGGEEECCTTSCHHHHGGGGTHHHHHHHHHHTTTCCCTTCCEEEECC-SHHHHHHHHHH-HHHTCSCEEEECSCTT
T ss_pred             EEechhheEECCCCCCHHHhhhhhhhHHHHHHHHHhhcCCCCCCEEEEECC-CHHHHHHHHHH-HHcCCCeEEEEcCCHH
Confidence            999999999999999999999999999999999888899999999999998 99999999999 66899 8999999999


Q ss_pred             hHHHHHhcCCcEEEEcCC-chhHHHHHHHHhCCCcccEEEECCCC-ccHHHHHHHhhccC-ceEE
Q psy1959         199 KTDLIRQKGAWAALTFTN-EKSLVNKVLEVSGGKYANVVFEAVGG-EDKTDLIRQKGAWA-ALTF  260 (296)
Q Consensus       199 ~~~~~~~~g~~~~~~~~~-~~~~~~~i~~~~~~~g~d~vld~~g~-~~~~~~~~~lg~~~-g~~~  260 (296)
                      |+++++++|++.++++++ ..++.+.+++.+++ ++|++||++|+ +.+..+++++ +++ |++.
T Consensus       230 ~~~~a~~lGa~~vi~~~~~~~~~~~~i~~~~~g-g~D~vid~~g~~~~~~~~~~~l-~~g~G~iv  292 (378)
T 3uko_A          230 KYETAKKFGVNEFVNPKDHDKPIQEVIVDLTDG-GVDYSFECIGNVSVMRAALECC-HKGWGTSV  292 (378)
T ss_dssp             HHHHHHTTTCCEEECGGGCSSCHHHHHHHHTTS-CBSEEEECSCCHHHHHHHHHTB-CTTTCEEE
T ss_pred             HHHHHHHcCCcEEEccccCchhHHHHHHHhcCC-CCCEEEECCCCHHHHHHHHHHh-hccCCEEE
Confidence            999999999999999872 26888999999877 99999999999 6899999999 774 7663

>1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1

Probab=100.00  E-value=3.3e-40  Score=302.73  Aligned_cols=247  Identities=22%  Similarity=0.373  Sum_probs=217.3

Q ss_pred             CcceEEecCCCC--------CCCCCCCCCCCCCCCcEEEEeeeeecChhhHHHHcCCCCCCCCCCCcCCCceeEEEEEEc
Q psy1959          12 SSDLLLYNGSGD--------AKPTLPLVPGFEFSGTIIEKKMMTRINSSDLLLYNGSGDAKPTLPLVPGFEFSGTVIEVA   83 (296)
Q Consensus        12 ~~~~~~~~~~~~--------~~~~p~~~~~~~~~~evlvkv~~~~i~~~D~~~~~g~~~~~~~~p~~~G~e~~G~V~~v~   83 (296)
                      .|+++++++++.        ..|.|.|+++     ||+|||.+++||++|++.+.|.++....+|.++|||++|+|+++ 
T Consensus        29 ~Mka~~~~~~g~~~~l~~~~~~~~P~~~~~-----eVlVkv~a~gi~~~D~~~~~G~~~~~~~~P~v~G~E~~G~V~~v-  102 (351)
T 1yb5_A           29 LMRAVRVFEFGGPEVLKLRSDIAVPIPKDH-----QVLIKVHACGVNPVETYIRSGTYSRKPLLPYTPGSDVAGVIEAV-  102 (351)
T ss_dssp             EEEEEEESSCSSGGGEEEEEEEECCCCCTT-----EEEEEEEEEECCHHHHHHHHTCSSCCCCSSBCCCSCEEEEEEEE-
T ss_pred             eEEEEEEccCCCcceeEEeeecCCCCCCCC-----EEEEEEEEEecCHHHHHHhCCCCCCCCCCCCcCCceeEEEEEEE-
Confidence            488999887653        2467778888     99999999999999999999977544568999999999999999 


Q ss_pred             cCCCCCCCCCCCCCCCCCCCEEEEecCCCCCcccceEeeeCCceEECCCCCCHHHHhhhccHHHHHHHHHHHHcCCCCCc
Q psy1959          84 DTKSSSTEEDDEEDVLQVGDKVLALNKELLHGFSDQCVVHTNDVFKIPEKMTFEHAASLADSYSTAQIVFSRHAKLKEKQ  163 (296)
Q Consensus        84 ~~~~~~~~~g~~v~~~~~Gd~V~~~~~~~~g~~~~~~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~  163 (296)
                               |+++++|++||||++... ..|+|+||+++|++.++++|+++++++||+++++++|||+++.+.+++++|+
T Consensus       103 ---------G~~v~~~~vGdrV~~~~~-~~G~~aey~~v~~~~~~~~P~~l~~~~aA~l~~~~~ta~~al~~~~~~~~g~  172 (351)
T 1yb5_A          103 ---------GDNASAFKKGDRVFTSST-ISGGYAEYALAADHTVYKLPEKLDFKQGAAIGIPYFTAYRALIHSACVKAGE  172 (351)
T ss_dssp             ---------CTTCTTCCTTCEEEESCC-SSCSSBSEEEEEGGGEEECCTTSCHHHHTTTHHHHHHHHHHHHTTSCCCTTC
T ss_pred             ---------CCCCCCCCCCCEEEEeCC-CCCcceeEEEECHHHeEECCCCCCHHHHHhhhhHHHHHHHHHHHhhCCCCcC
Confidence                     999999999999998642 2499999999999999999999999999999999999999997789999999


Q ss_pred             EEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCcEEEEcCCchhHHHHHHHHhCCCcccEEEECCCCc
Q psy1959         164 TVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNKVLEVSGGKYANVVFEAVGGE  243 (296)
Q Consensus       164 ~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~g~d~vld~~g~~  243 (296)
                      +|+|+|++|++|++++|+| +..|++|+++++++++.+.++++|++.++++++ .++.+.+.+.++++++|++|||+|++
T Consensus       173 ~vlV~GasggiG~~~~~~a-~~~Ga~Vi~~~~~~~~~~~~~~~ga~~~~d~~~-~~~~~~~~~~~~~~~~D~vi~~~G~~  250 (351)
T 1yb5_A          173 SVLVHGASGGVGLAACQIA-RAYGLKILGTAGTEEGQKIVLQNGAHEVFNHRE-VNYIDKIKKYVGEKGIDIIIEMLANV  250 (351)
T ss_dssp             EEEEETCSSHHHHHHHHHH-HHTTCEEEEEESSHHHHHHHHHTTCSEEEETTS-TTHHHHHHHHHCTTCEEEEEESCHHH
T ss_pred             EEEEECCCChHHHHHHHHH-HHCCCEEEEEeCChhHHHHHHHcCCCEEEeCCC-chHHHHHHHHcCCCCcEEEEECCChH
Confidence            9999999999999999999 678999999999999999999999999898877 67888888888777999999999998


Q ss_pred             cHHHHHHHhhccCceEEe---------ecccceeeeeEEeccc
Q psy1959         244 DKTDLIRQKGAWAALTFT---------NEKSLVNKVLEVSGGK  277 (296)
Q Consensus       244 ~~~~~~~~lg~~~g~~~~---------~~~~~~~k~~~i~g~~  277 (296)
                      .+..+++++ +++|++..         +...++.|++++.|+.
T Consensus       251 ~~~~~~~~l-~~~G~iv~~g~~~~~~~~~~~~~~~~~~i~g~~  292 (351)
T 1yb5_A          251 NLSKDLSLL-SHGGRVIVVGSRGTIEINPRDTMAKESSIIGVT  292 (351)
T ss_dssp             HHHHHHHHE-EEEEEEEECCCCSCEEECTHHHHTTTCEEEECC
T ss_pred             HHHHHHHhc-cCCCEEEEEecCCCCccCHHHHHhCCcEEEEEE
Confidence            889999999 77776643         2234567788888874

>4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli}

Probab=100.00  E-value=1.5e-40  Score=306.36  Aligned_cols=249  Identities=17%  Similarity=0.195  Sum_probs=215.8

Q ss_pred             ccCCcceEEecCC------CCC----CCCCCCCCCCCCCCcEEEEeeeeecChhhHHHHcCCCCCCCCCCCcCCCceeEE
Q psy1959           9 ALNSSDLLLYNGS------GDA----KPTLPLVPGFEFSGTIIEKKMMTRINSSDLLLYNGSGDAKPTLPLVPGFEFSGT   78 (296)
Q Consensus         9 ~~~~~~~~~~~~~------~~~----~~~p~~~~~~~~~~evlvkv~~~~i~~~D~~~~~g~~~~~~~~p~~~G~e~~G~   78 (296)
                      .|-+||++++++.      ...    .|.|.|.++     ||+|||.+++||++|+..+.|.++. ..+|.++|||++|+
T Consensus        19 ~m~~MkA~~~~~~~~~~~~~~l~~~~~p~P~~~~~-----eVlVkv~a~gi~~~D~~~~~g~~~~-~~~p~v~G~E~~G~   92 (363)
T 4dvj_A           19 YFQSMKAVGYNKPAPITDDASLLDIELPKPAPAGH-----DILVEVKAVSVNPVDYKVRRSTPPD-GTDWKVIGYDAAGI   92 (363)
T ss_dssp             CCCEEEEEEBSSCCCTTSTTSSEEEEEECCCCCTT-----EEEEEEEEEECCHHHHHHHHHCCC---CCSBCCCCCEEEE
T ss_pred             hhheeEEEEEeccCCCCCCceEEEeecCCCCCCCC-----EEEEEEEEEEeCHHHHHHHcCCCCC-CCCCCcccceeEEE
Confidence            3557999999765      222    678888899     9999999999999999999987754 46799999999999


Q ss_pred             EEEEccCCCCCCCCCCCCCCCCCCCEEEEecC-CCCCcccceEeeeCCceEECCCCCCHHHHhhhccHHHHHHHHHHHHc
Q psy1959          79 VIEVADTKSSSTEEDDEEDVLQVGDKVLALNK-ELLHGFSDQCVVHTNDVFKIPEKMTFEHAASLADSYSTAQIVFSRHA  157 (296)
Q Consensus        79 V~~v~~~~~~~~~~g~~v~~~~~Gd~V~~~~~-~~~g~~~~~~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~l~~~~  157 (296)
                      |+++          |++|++|++||||+++.. ...|+|+||+++|++.++++|+++++++||+++.+++|||+++.+.+
T Consensus        93 V~~v----------G~~v~~~~vGdrV~~~~~~~~~G~~aey~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~al~~~~  162 (363)
T 4dvj_A           93 VSAV----------GPDVTLFRPGDEVFYAGSIIRPGTNAEFHLVDERIVGRKPKTLDWAEAAALPLTSITAWEAFFDRL  162 (363)
T ss_dssp             EEEE----------CTTCCSCCTTCEEEECCCTTSCCSCBSEEEEEGGGCEECCTTSCHHHHHTSHHHHHHHHHHHHTTS
T ss_pred             EEEe----------CCCCCCCCCCCEEEEccCCCCCccceEEEEeCHHHeeECCCCCCHHHHHhhhhHHHHHHHHHHHhh
Confidence            9999          999999999999998642 23599999999999999999999999999999999999999998888


Q ss_pred             CCC-----CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCcEEEEcCCchhHHHHHHHHhCCCc
Q psy1959         158 KLK-----EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNKVLEVSGGKY  232 (296)
Q Consensus       158 ~~~-----~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~g  232 (296)
                      +++     +|++|+|+|++|++|++++|+|+...|++|++++++++|+++++++|++.++++++  ++.+.+++. .+++
T Consensus       163 ~~~~~~~~~g~~VlV~Ga~G~vG~~a~qlak~~~g~~Vi~~~~~~~~~~~~~~lGad~vi~~~~--~~~~~v~~~-~~~g  239 (363)
T 4dvj_A          163 DVNKPVPGAAPAILIVGGAGGVGSIAVQIARQRTDLTVIATASRPETQEWVKSLGAHHVIDHSK--PLAAEVAAL-GLGA  239 (363)
T ss_dssp             CTTSCCTTSEEEEEEESTTSHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHHTTCSEEECTTS--CHHHHHHTT-CSCC
T ss_pred             CcCcCcCCCCCEEEEECCCCHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHHcCCCEEEeCCC--CHHHHHHHh-cCCC
Confidence            998     89999999988999999999994336899999999999999999999999998864  577778777 5679


Q ss_pred             ccEEEECCCC-ccHHHHHHHhhccCceEEe-------ecccceeeeeEEeccc
Q psy1959         233 ANVVFEAVGG-EDKTDLIRQKGAWAALTFT-------NEKSLVNKVLEVSGGK  277 (296)
Q Consensus       233 ~d~vld~~g~-~~~~~~~~~lg~~~g~~~~-------~~~~~~~k~~~i~g~~  277 (296)
                      +|++|||+|+ +.+..+++++ +++|++..       +...+..|++++.+++
T Consensus       240 ~Dvvid~~g~~~~~~~~~~~l-~~~G~iv~~g~~~~~~~~~~~~k~~~i~~~~  291 (363)
T 4dvj_A          240 PAFVFSTTHTDKHAAEIADLI-APQGRFCLIDDPSAFDIMLFKRKAVSIHHEL  291 (363)
T ss_dssp             EEEEEECSCHHHHHHHHHHHS-CTTCEEEECSCCSSCCGGGGTTTTCEEEECC
T ss_pred             ceEEEECCCchhhHHHHHHHh-cCCCEEEEECCCCccchHHHhhccceEEEEE
Confidence            9999999998 5899999999 88887743       2345667888888765

>3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus}

Probab=100.00  E-value=2.5e-40  Score=302.82  Aligned_cols=243  Identities=22%  Similarity=0.186  Sum_probs=213.5

Q ss_pred             CcceEEecCCC------CC----CCCCCCCCCCCCCCcEEEEeeeeecChhhHHHHcCCCCCCCCCCCcCCCceeEEEEE
Q psy1959          12 SSDLLLYNGSG------DA----KPTLPLVPGFEFSGTIIEKKMMTRINSSDLLLYNGSGDAKPTLPLVPGFEFSGTVIE   81 (296)
Q Consensus        12 ~~~~~~~~~~~------~~----~~~p~~~~~~~~~~evlvkv~~~~i~~~D~~~~~g~~~~~~~~p~~~G~e~~G~V~~   81 (296)
                      +||++++++++      ..    .|.|.|.++     ||+|||.+++||++|++.+.|.   ...+|.++|||++|+|++
T Consensus         2 ~MkA~~~~~~G~~~~~~~l~~~~~~~P~~~~~-----eVlVkv~a~gi~~~D~~~~~g~---~~~~p~i~G~e~~G~V~~   73 (346)
T 3fbg_A            2 SLKAIGFEQPFKLSDGNLFKTFNLDIPEPKVH-----EILVKIQSISVNPVDTKQRLMD---VSKAPRVLGFDAIGVVES   73 (346)
T ss_dssp             CEEEEEBSSCCCGGGCCCCEEEEECCCCCCTT-----EEEEEEEEEEECHHHHHHTTSC---CSSSCBCCCCCEEEEEEE
T ss_pred             CcEEEEEEeccccCCCceeEeccccCCCCCCC-----EEEEEEEEEEcCHHHHHHHhCC---CCCCCcCcCCccEEEEEE
Confidence            48899998765      22    688888999     9999999999999999999886   356799999999999999


Q ss_pred             EccCCCCCCCCCCCCCCCCCCCEEEEecC-CCCCcccceEeeeCCceEECCCCCCHHHHhhhccHHHHHHHHHHHHcCCC
Q psy1959          82 VADTKSSSTEEDDEEDVLQVGDKVLALNK-ELLHGFSDQCVVHTNDVFKIPEKMTFEHAASLADSYSTAQIVFSRHAKLK  160 (296)
Q Consensus        82 v~~~~~~~~~~g~~v~~~~~Gd~V~~~~~-~~~g~~~~~~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~l~~~~~~~  160 (296)
                      +          |++|++|++||||++... ...|+|+||+++|++.++++|+++++++||+++.++.|||+++.+.++++
T Consensus        74 v----------G~~v~~~~~GdrV~~~~~~~~~G~~aey~~v~~~~~~~iP~~~~~~~aa~~~~~~~ta~~~l~~~~~~~  143 (346)
T 3fbg_A           74 V----------GNEVTMFNQGDIVYYSGSPDQNGSNAEYQLINERLVAKAPKNISAEQAVSLPLTGITAYETLFDVFGIS  143 (346)
T ss_dssp             E----------CTTCCSCCTTCEEEECCCTTSCCSSBSEEEEEGGGEEECCSSSCHHHHTTSHHHHHHHHHHHHTTSCCC
T ss_pred             e----------CCCCCcCCCCCEEEEcCCCCCCcceeEEEEEChHHeEECCCCCCHHHhhhcchhHHHHHHHHHHhcCCc
Confidence            9          999999999999998642 23699999999999999999999999999999999999999998889998


Q ss_pred             ------CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCcEEEEcCCchhHHHHHHHHhCCCccc
Q psy1959         161 ------EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNKVLEVSGGKYAN  234 (296)
Q Consensus       161 ------~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~g~d  234 (296)
                            +|++|+|+|++|++|++++|+| +..|++|++++++++++++++++|++.++++++  ++.+.+++. .++++|
T Consensus       144 ~~~~~~~g~~VlV~gg~G~vG~~a~qla-~~~Ga~Vi~~~~~~~~~~~~~~lGa~~vi~~~~--~~~~~~~~~-~~~g~D  219 (346)
T 3fbg_A          144 RNRNENEGKTLLIINGAGGVGSIATQIA-KAYGLRVITTASRNETIEWTKKMGADIVLNHKE--SLLNQFKTQ-GIELVD  219 (346)
T ss_dssp             SSHHHHTTCEEEEESTTSHHHHHHHHHH-HHTTCEEEEECCSHHHHHHHHHHTCSEEECTTS--CHHHHHHHH-TCCCEE
T ss_pred             cccccCCCCEEEEEcCCCHHHHHHHHHH-HHcCCEEEEEeCCHHHHHHHHhcCCcEEEECCc--cHHHHHHHh-CCCCcc
Confidence                  9999999988899999999999 678999999999999999999999999998864  577778777 567999


Q ss_pred             EEEECCCC-ccHHHHHHHhhccCceEEe--------ecccceeeeeEEeccc
Q psy1959         235 VVFEAVGG-EDKTDLIRQKGAWAALTFT--------NEKSLVNKVLEVSGGK  277 (296)
Q Consensus       235 ~vld~~g~-~~~~~~~~~lg~~~g~~~~--------~~~~~~~k~~~i~g~~  277 (296)
                      ++|||+|+ ..+..+++++ +++|++..        +...+..|++++.+++
T Consensus       220 vv~d~~g~~~~~~~~~~~l-~~~G~iv~~~~~~~~~~~~~~~~~~~~~~~~~  270 (346)
T 3fbg_A          220 YVFCTFNTDMYYDDMIQLV-KPRGHIATIVAFENDQDLNALKPKSLSFSHEF  270 (346)
T ss_dssp             EEEESSCHHHHHHHHHHHE-EEEEEEEESSCCSSCBCGGGGTTTTCEEEECC
T ss_pred             EEEECCCchHHHHHHHHHh-ccCCEEEEECCCCCCCccccccccceEEEEEE
Confidence            99999998 4679999999 88887732        2345666888888865

>2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus}

Probab=100.00  E-value=1.7e-40  Score=303.63  Aligned_cols=247  Identities=23%  Similarity=0.316  Sum_probs=213.5

Q ss_pred             cceEEecCCCCC-------CCCCCCCCCCCCCCcEEEEeeeeecChhhHHHHcCCCCCCCCCCCcCCCceeEEEEEEccC
Q psy1959          13 SDLLLYNGSGDA-------KPTLPLVPGFEFSGTIIEKKMMTRINSSDLLLYNGSGDAKPTLPLVPGFEFSGTVIEVADT   85 (296)
Q Consensus        13 ~~~~~~~~~~~~-------~~~p~~~~~~~~~~evlvkv~~~~i~~~D~~~~~g~~~~~~~~p~~~G~e~~G~V~~v~~~   85 (296)
                      ||++++++++..       .|.|+|+++     ||||||.+++||++|++.+.|.++....+|.++|||++|+|+++   
T Consensus         1 Mka~~~~~~g~~~~l~~~~~~~P~~~~~-----eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~v~G~E~~G~V~~v---   72 (343)
T 2eih_A            1 MRAVVMRARGGPEVLEVADLPVPEPGPK-----EVRVRLKAAALNHLDVWVRKGVASPKLPLPHVLGADGSGVVDAV---   72 (343)
T ss_dssp             CEEEEECSSSSGGGEEEEECCCCCCCTT-----EEEEEEEEEECCHHHHHHHHTSSSTTCCSSEECCSEEEEEEEEE---
T ss_pred             CeEEEEecCCCCceEEEEecCCCCCCCC-----EEEEEEEEEEeCHHHHHHhcCCCCCCCCCCcccccceEEEEEEE---
Confidence            567777766641       677788889     99999999999999999999977544467999999999999999   


Q ss_pred             CCCCCCCCCCCCCCCCCCEEEEec-------------------------CCCCCcccceEeeeCCceEECCCCCCHHHHh
Q psy1959          86 KSSSTEEDDEEDVLQVGDKVLALN-------------------------KELLHGFSDQCVVHTNDVFKIPEKMTFEHAA  140 (296)
Q Consensus        86 ~~~~~~~g~~v~~~~~Gd~V~~~~-------------------------~~~~g~~~~~~~v~~~~~~~iP~~~~~~~aa  140 (296)
                             |++|++|++||||+..+                         ....|+|+||+++|++.++++|+++++++||
T Consensus        73 -------G~~v~~~~vGdrV~~~~~~~cg~c~~C~~g~~~~C~~~~~~G~~~~G~~aey~~v~~~~~~~~P~~~~~~~aa  145 (343)
T 2eih_A           73 -------GPGVEGFAPGDEVVINPGLSCGRCERCLAGEDNLCPRYQILGEHRHGTYAEYVVLPEANLAPKPKNLSFEEAA  145 (343)
T ss_dssp             -------CSSCCSCCTTCEEEECCEECCSCSHHHHTTCGGGCTTCEETTTSSCCSSBSEEEEEGGGEEECCTTSCHHHHH
T ss_pred             -------CCCCCCCCCCCEEEECCCCCcccchhhccCcccccccccccCcCCCccceeEEEeChHHeEECCCCCCHHHHh
Confidence                   99999999999999421                         1125999999999999999999999999999


Q ss_pred             hhccHHHHHHHHHHHHcCCCCCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCcEEEEcCCchhH
Q psy1959         141 SLADSYSTAQIVFSRHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSL  220 (296)
Q Consensus       141 ~l~~~~~ta~~~l~~~~~~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  220 (296)
                      +|+.++.|||+++.+.+++++|++|+|+|++|++|++++|++ +..|++|+++++++++.+.++++|++.++++++ .++
T Consensus       146 ~l~~~~~ta~~al~~~~~~~~g~~vlV~Gasg~iG~~~~~~a-~~~G~~Vi~~~~~~~~~~~~~~~ga~~~~d~~~-~~~  223 (343)
T 2eih_A          146 AIPLTFLTAWQMVVDKLGVRPGDDVLVMAAGSGVSVAAIQIA-KLFGARVIATAGSEDKLRRAKALGADETVNYTH-PDW  223 (343)
T ss_dssp             HSHHHHHHHHHHHTTTSCCCTTCEEEECSTTSTTHHHHHHHH-HHTTCEEEEEESSHHHHHHHHHHTCSEEEETTS-TTH
T ss_pred             hchhhHHHHHHHHHHhcCCCCCCEEEEECCCchHHHHHHHHH-HHCCCEEEEEeCCHHHHHHHHhcCCCEEEcCCc-ccH
Confidence            999999999999966679999999999999999999999999 678999999999999999999999998888876 677


Q ss_pred             HHHHHHHhCCCcccEEEECCCCccHHHHHHHhhccCceEEe-----------ecccceeeeeEEeccc
Q psy1959         221 VNKVLEVSGGKYANVVFEAVGGEDKTDLIRQKGAWAALTFT-----------NEKSLVNKVLEVSGGK  277 (296)
Q Consensus       221 ~~~i~~~~~~~g~d~vld~~g~~~~~~~~~~lg~~~g~~~~-----------~~~~~~~k~~~i~g~~  277 (296)
                      .+.+.+.+++.++|++||++|.+.+..+++++ +++|++..           +...++.|++++.|++
T Consensus       224 ~~~~~~~~~~~~~d~vi~~~g~~~~~~~~~~l-~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~g~~  290 (343)
T 2eih_A          224 PKEVRRLTGGKGADKVVDHTGALYFEGVIKAT-ANGGRIAIAGASSGYEGTLPFAHVFYRQLSILGST  290 (343)
T ss_dssp             HHHHHHHTTTTCEEEEEESSCSSSHHHHHHHE-EEEEEEEESSCCCSCCCCCCTTHHHHTTCEEEECC
T ss_pred             HHHHHHHhCCCCceEEEECCCHHHHHHHHHhh-ccCCEEEEEecCCCCcCccCHHHHHhCCcEEEEec
Confidence            88888888767899999999988999999999 77776632           2224557888888865

>3pi7_A NADH oxidoreductase; groes-like fold, NAD(P)-binding rossmann fold, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.71A {Mesorhizobium loti}

Probab=100.00  E-value=3.4e-41  Score=308.91  Aligned_cols=249  Identities=18%  Similarity=0.186  Sum_probs=215.5

Q ss_pred             CCcceEEec------CCCCC----C---------CCCCCCCCCCCCCcEEEEeeeeecChhhHHHHcCCCCCCCCCCCcC
Q psy1959          11 NSSDLLLYN------GSGDA----K---------PTLPLVPGFEFSGTIIEKKMMTRINSSDLLLYNGSGDAKPTLPLVP   71 (296)
Q Consensus        11 ~~~~~~~~~------~~~~~----~---------~~p~~~~~~~~~~evlvkv~~~~i~~~D~~~~~g~~~~~~~~p~~~   71 (296)
                      .+||+++++      .++..    .         |.|+|.++     ||||||.+++||++|++.+.|.++....+|.++
T Consensus         9 ~~mka~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~P~~~~~-----eVlVkv~a~gi~~~D~~~~~G~~~~~~~~p~v~   83 (349)
T 3pi7_A            9 SEMKALLLVGDGYTKTPSGSALEAMEPYLEQGRIAVPAPGPS-----QVLIKVNLASINPSDVAFIKGQYGQPRVKGRPA   83 (349)
T ss_dssp             SEEEEEEECSCBSCSSCCCSCCCCSTTTEEEEEEECCCCCTT-----EEEEEEEEEECCHHHHHHHTTCSSSCBCTTSBC
T ss_pred             hhheEEEEEccccCCCcccceEEEeecccccccCCCCCCCCC-----eEEEEEEEecCCHHHHHHhcccCCCCCCCCCCc
Confidence            369999999      33333    5         77888888     999999999999999999999887666789999


Q ss_pred             CCceeEEEEEEccCCCCCCCCCCCC-CCCCCCCEEEEecC-CCCCcccceEeeeCCceEECCCCCCHHHHhhhccHHHHH
Q psy1959          72 GFEFSGTVIEVADTKSSSTEEDDEE-DVLQVGDKVLALNK-ELLHGFSDQCVVHTNDVFKIPEKMTFEHAASLADSYSTA  149 (296)
Q Consensus        72 G~e~~G~V~~v~~~~~~~~~~g~~v-~~~~~Gd~V~~~~~-~~~g~~~~~~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta  149 (296)
                      |||++|+|+++          |++| ++|++||||++... ...|+|+||+++|++.++++|+++++++||+++..++||
T Consensus        84 G~E~~G~V~~v----------G~~v~~~~~vGdrV~~~~g~~~~G~~aey~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta  153 (349)
T 3pi7_A           84 GFEGVGTIVAG----------GDEPYAKSLVGKRVAFATGLSNWGSWAEYAVAEAAACIPLLDTVRDEDGAAMIVNPLTA  153 (349)
T ss_dssp             CSEEEEEEEEE----------CSSHHHHHHTTCEEEEECTTSSCCSSBSEEEEEGGGEEECCTTCCC--GGGSSHHHHHH
T ss_pred             cceEEEEEEEE----------CCCccCCCCCCCEEEEeccCCCCccceeeEeechHHeEECCCCCCHHHHhhccccHHHH
Confidence            99999999999          9999 89999999998752 235999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCCCC-cEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCcEEEEcCCchhHHHHHHHHh
Q psy1959         150 QIVFSRHAKLKEK-QTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNKVLEVS  228 (296)
Q Consensus       150 ~~~l~~~~~~~~g-~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~  228 (296)
                      |+++ +.++ ++| ++++|+|++|++|++++|+| +..|++|++++++++++++++++|++.++++++ .++.+.+++.+
T Consensus       154 ~~~~-~~~~-~~g~~~vli~gg~g~vG~~a~qla-~~~Ga~Vi~~~~~~~~~~~~~~~Ga~~~~~~~~-~~~~~~v~~~~  229 (349)
T 3pi7_A          154 IAMF-DIVK-QEGEKAFVMTAGASQLCKLIIGLA-KEEGFRPIVTVRRDEQIALLKDIGAAHVLNEKA-PDFEATLREVM  229 (349)
T ss_dssp             HHHH-HHHH-HHCCSEEEESSTTSHHHHHHHHHH-HHHTCEEEEEESCGGGHHHHHHHTCSEEEETTS-TTHHHHHHHHH
T ss_pred             HHHH-HHHh-hCCCCEEEEeCCCcHHHHHHHHHH-HHCCCEEEEEeCCHHHHHHHHHcCCCEEEECCc-HHHHHHHHHHh
Confidence            9776 4555 666 79999988999999999999 568999999999999999999999999999987 78899999988


Q ss_pred             CCCcccEEEECCCCccHHHHHHHhhccCceEEee-----------c-ccceeeeeEEeccccc
Q psy1959         229 GGKYANVVFEAVGGEDKTDLIRQKGAWAALTFTN-----------E-KSLVNKVLEVSGGKYA  279 (296)
Q Consensus       229 ~~~g~d~vld~~g~~~~~~~~~~lg~~~g~~~~~-----------~-~~~~~k~~~i~g~~~~  279 (296)
                      +++++|++|||+|++.+..+++++ +++|++..-           . ..++.|++++.|++..
T Consensus       230 ~~~g~D~vid~~g~~~~~~~~~~l-~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~~i~g~~~~  291 (349)
T 3pi7_A          230 KAEQPRIFLDAVTGPLASAIFNAM-PKRARWIIYGRLDPDATVIREPGQLIFQHKHIEGFWLS  291 (349)
T ss_dssp             HHHCCCEEEESSCHHHHHHHHHHS-CTTCEEEECCCSCCSCCCCSCTHHHHHSCCEEEECCHH
T ss_pred             cCCCCcEEEECCCChhHHHHHhhh-cCCCEEEEEeccCCCCCCCCchhhhhccccEEEEEEeh
Confidence            777999999999998889999999 777777432           2 3456788999988743

>1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A*

Probab=100.00  E-value=5e-40  Score=303.72  Aligned_cols=227  Identities=22%  Similarity=0.238  Sum_probs=202.5

Q ss_pred             CcceEEecCCCCC-----CCCCCCCCCCCCCCcEEEEeeeeecChhhHHHHcCCCCCCCCCCCcCCCceeEEEEEEccCC
Q psy1959          12 SSDLLLYNGSGDA-----KPTLPLVPGFEFSGTIIEKKMMTRINSSDLLLYNGSGDAKPTLPLVPGFEFSGTVIEVADTK   86 (296)
Q Consensus        12 ~~~~~~~~~~~~~-----~~~p~~~~~~~~~~evlvkv~~~~i~~~D~~~~~g~~~~~~~~p~~~G~e~~G~V~~v~~~~   86 (296)
                      +||+++++++++.     .|.|+|.++     ||||||.+++||++|++++.|.++  ..+|.++|||++|+|+++    
T Consensus         9 ~mka~~~~~~g~~l~~~~~~~p~~~~~-----eVlVkv~a~gi~~~D~~~~~g~~~--~~~P~v~GhE~~G~V~~v----   77 (373)
T 1p0f_A            9 TCKAAVAWEPHKPLSLETITVAPPKAH-----EVRIKILASGICGSDSSVLKEIIP--SKFPVILGHEAVGVVESI----   77 (373)
T ss_dssp             EEEEEEBSSTTSCCEEEEEEECCCCTT-----EEEEEEEEEECCHHHHHHHTTSSC--CCSSBCCCCCEEEEEEEE----
T ss_pred             eeEEEEEEcCCCCeeEEEeeCCCCCCC-----eEEEEEeEEeecchhHHHhcCCCC--CCCCcccCcCceEEEEEE----
Confidence            5899999998753     677888889     999999999999999999998765  467999999999999999    


Q ss_pred             CCCCCCCCCCCCCCCCCEEEEecC--------------------------C--------------------CCCcccceE
Q psy1959          87 SSSTEEDDEEDVLQVGDKVLALNK--------------------------E--------------------LLHGFSDQC  120 (296)
Q Consensus        87 ~~~~~~g~~v~~~~~Gd~V~~~~~--------------------------~--------------------~~g~~~~~~  120 (296)
                            |++|++|++||||++...                          +                    ..|+|+||+
T Consensus        78 ------G~~v~~~~vGdrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~~~~~G~~~~g~~~~~~~g~~~~~~~~~G~~aey~  151 (373)
T 1p0f_A           78 ------GAGVTCVKPGDKVIPLFVPQCGSCRACKSSNSNFCEKNDMGAKTGLMADMTSRFTCRGKPIYNLMGTSTFTEYT  151 (373)
T ss_dssp             ------CTTCCSCCTTCEEEECSSCCCSSSHHHHCTTCCCCTTCSTTTCCCSCTTSCCSEEETTEEEBCSTTTCCSBSEE
T ss_pred             ------CCCCCccCCCCEEEECCCCCCCCChhhcCCCcCcCcCCCcccccccccCCccccccCCcccccccCCccceeEE
Confidence                  999999999999997531                          0                    138999999


Q ss_pred             eeeCCceEECCCCCCHHHHhhhccHHHHHHHHHHHHcCCCCCcEEEEEcCCCcHHHHHHHHHHHhCCC-EEEEEeCCcch
Q psy1959         121 VVHTNDVFKIPEKMTFEHAASLADSYSTAQIVFSRHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKA-KVIGVCNSEDK  199 (296)
Q Consensus       121 ~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~-~Vi~~~~~~~~  199 (296)
                      ++|++.++++|++++++ ||+++.++.|||+++.+.+++++|++|+|+|+ |++|++++|+| +..|+ +|++++++++|
T Consensus       152 ~v~~~~~~~iP~~l~~~-aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~Ga-G~vG~~aiqla-k~~Ga~~Vi~~~~~~~~  228 (373)
T 1p0f_A          152 VVADIAVAKIDPKAPLE-SCLIGCGFATGYGAAVNTAKVTPGSTCAVFGL-GGVGFSAIVGC-KAAGASRIIGVGTHKDK  228 (373)
T ss_dssp             EEETTSEEEECTTCCGG-GGGGGTHHHHHHHHHHTTTCCCTTCEEEEECC-SHHHHHHHHHH-HHHTCSEEEEECSCGGG
T ss_pred             EEchhhEEECCCCCChh-hhhhhhHHHHHHHHHHhccCCCCCCEEEEECC-CHHHHHHHHHH-HHcCCCeEEEECCCHHH
Confidence            99999999999999999 99999999999999878899999999999996 99999999999 56799 89999999999


Q ss_pred             HHHHHhcCCcEEEEcCC-chhHHHHHHHHhCCCcccEEEECCCC-ccHHHHHHHhhccC-ceEE
Q psy1959         200 TDLIRQKGAWAALTFTN-EKSLVNKVLEVSGGKYANVVFEAVGG-EDKTDLIRQKGAWA-ALTF  260 (296)
Q Consensus       200 ~~~~~~~g~~~~~~~~~-~~~~~~~i~~~~~~~g~d~vld~~g~-~~~~~~~~~lg~~~-g~~~  260 (296)
                      +++++++|++.++++++ ..++.+.+++.+++ ++|++||++|+ +.+..+++++ +++ |++.
T Consensus       229 ~~~a~~lGa~~vi~~~~~~~~~~~~i~~~t~g-g~Dvvid~~g~~~~~~~~~~~l-~~~~G~iv  290 (373)
T 1p0f_A          229 FPKAIELGATECLNPKDYDKPIYEVICEKTNG-GVDYAVECAGRIETMMNALQST-YCGSGVTV  290 (373)
T ss_dssp             HHHHHHTTCSEEECGGGCSSCHHHHHHHHTTS-CBSEEEECSCCHHHHHHHHHTB-CTTTCEEE
T ss_pred             HHHHHHcCCcEEEecccccchHHHHHHHHhCC-CCCEEEECCCCHHHHHHHHHHH-hcCCCEEE
Confidence            99999999999998863 14688888888876 99999999998 6899999999 777 7764

>1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1

Probab=100.00  E-value=2e-40  Score=306.15  Aligned_cols=247  Identities=20%  Similarity=0.192  Sum_probs=215.1

Q ss_pred             cCCcceEEecCCCCC-----CCCCCCCCCCCCCCcEEEEeeeeecChhhHHHHcCCCCCCCCCCCcCCCceeEEEEEEcc
Q psy1959          10 LNSSDLLLYNGSGDA-----KPTLPLVPGFEFSGTIIEKKMMTRINSSDLLLYNGSGDAKPTLPLVPGFEFSGTVIEVAD   84 (296)
Q Consensus        10 ~~~~~~~~~~~~~~~-----~~~p~~~~~~~~~~evlvkv~~~~i~~~D~~~~~g~~~~~~~~p~~~G~e~~G~V~~v~~   84 (296)
                      ..+||++++++++..     .|.|+|.++     ||||||.+++||++|++++.|.++  ..+|.++|||++|+|+++  
T Consensus         4 ~~~mka~~~~~~g~~l~~~~~~~P~~~~~-----eVlVkv~a~gi~~~D~~~~~g~~~--~~~P~v~GhE~~G~V~~v--   74 (371)
T 1f8f_A            4 LKDIIAAVTPCKGADFELQALKIRQPQGD-----EVLVKVVATGMCHTDLIVRDQKYP--VPLPAVLGHEGSGIIEAI--   74 (371)
T ss_dssp             CEEEEEEEBCSTTCCCEEEEEEECCCCTT-----EEEEEEEEEECCHHHHHHHTTSSC--CCSSBCCCCEEEEEEEEE--
T ss_pred             cccceEEEEcCCCCCeEEEEecCCCCCCC-----EEEEEEEEeecCchhHHHHcCCCC--CCCCcccCcccceEEEEe--
Confidence            346999999988743     577888889     999999999999999999999764  457999999999999999  


Q ss_pred             CCCCCCCCCCCCCCCCCCCEEEEec---------------------------------------C--------CCCCccc
Q psy1959          85 TKSSSTEEDDEEDVLQVGDKVLALN---------------------------------------K--------ELLHGFS  117 (296)
Q Consensus        85 ~~~~~~~~g~~v~~~~~Gd~V~~~~---------------------------------------~--------~~~g~~~  117 (296)
                              |++|++|++||||+...                                       .        ...|+|+
T Consensus        75 --------G~~v~~~~~GdrV~~~~~~Cg~C~~C~~g~~~~C~~~~~~~~~g~~~~g~~~~~~~~g~~~~~~~~~~G~~a  146 (371)
T 1f8f_A           75 --------GPNVTELQVGDHVVLSYGYCGKCTQCNTGNPAYCSEFFGRNFSGADSEGNHALCTHDQGVVNDHFFAQSSFA  146 (371)
T ss_dssp             --------CTTCCSCCTTCEEEECCCCCSSSHHHHTTCGGGCTTHHHHSSSSSCSSSCCSBC------CBCCGGGTCCSB
T ss_pred             --------CCCCCCCCCCCEEEecCCCCCCChhhhCcCccccccccccccccccccccccccccCCccccccccCCcccc
Confidence                    99999999999998731                                       0        0148999


Q ss_pred             ceEeeeCCceEECCCCCCHHHHhhhccHHHHHHHHHHHHcCCCCCcEEEEEcCCCcHHHHHHHHHHHhCCC-EEEEEeCC
Q psy1959         118 DQCVVHTNDVFKIPEKMTFEHAASLADSYSTAQIVFSRHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKA-KVIGVCNS  196 (296)
Q Consensus       118 ~~~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~-~Vi~~~~~  196 (296)
                      ||+++|++.++++|+++++++||++++++.|||+++.+.+++++|++|+|+|+ |++|++++|+| +..|+ +|++++++
T Consensus       147 ey~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~al~~~~~~~~g~~VlV~Ga-G~vG~~a~qla-k~~Ga~~Vi~~~~~  224 (371)
T 1f8f_A          147 TYALSRENNTVKVTKDVPIELLGPLGCGIQTGAGACINALKVTPASSFVTWGA-GAVGLSALLAA-KVCGASIIIAVDIV  224 (371)
T ss_dssp             SEEEEEGGGEEEECTTSCGGGTGGGGTHHHHHHHHHHTTTCCCTTCEEEEESC-SHHHHHHHHHH-HHHTCSEEEEEESC
T ss_pred             CeEEechhheEECCCCCCHHHHHHhcchHHHHHHHHHhccCCCCCCEEEEECC-CHHHHHHHHHH-HHcCCCeEEEECCC
Confidence            99999999999999999999999999999999999977899999999999996 99999999999 56799 79999999


Q ss_pred             cchHHHHHhcCCcEEEEcCCchhHHHHHHHHhCCCcccEEEECCCC-ccHHHHHHHhhccCceEEee------------c
Q psy1959         197 EDKTDLIRQKGAWAALTFTNEKSLVNKVLEVSGGKYANVVFEAVGG-EDKTDLIRQKGAWAALTFTN------------E  263 (296)
Q Consensus       197 ~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~g~d~vld~~g~-~~~~~~~~~lg~~~g~~~~~------------~  263 (296)
                      ++++++++++|++.++++++ .++.+.+++.+++ ++|++||++|. +.+..+++++ +++|++..-            .
T Consensus       225 ~~~~~~a~~lGa~~vi~~~~-~~~~~~~~~~~~g-g~D~vid~~g~~~~~~~~~~~l-~~~G~iv~~G~~~~~~~~~~~~  301 (371)
T 1f8f_A          225 ESRLELAKQLGATHVINSKT-QDPVAAIKEITDG-GVNFALESTGSPEILKQGVDAL-GILGKIAVVGAPQLGTTAQFDV  301 (371)
T ss_dssp             HHHHHHHHHHTCSEEEETTT-SCHHHHHHHHTTS-CEEEEEECSCCHHHHHHHHHTE-EEEEEEEECCCCSTTCCCCCCH
T ss_pred             HHHHHHHHHcCCCEEecCCc-cCHHHHHHHhcCC-CCcEEEECCCCHHHHHHHHHHH-hcCCEEEEeCCCCCCCccccCH
Confidence            99999999999999999877 6788888888877 99999999998 6899999999 777776331            1


Q ss_pred             ccceeeeeEEecccc
Q psy1959         264 KSLVNKVLEVSGGKY  278 (296)
Q Consensus       264 ~~~~~k~~~i~g~~~  278 (296)
                      ..++.|++++.|++.
T Consensus       302 ~~~~~~~~~i~g~~~  316 (371)
T 1f8f_A          302 NDLLLGGKTILGVVE  316 (371)
T ss_dssp             HHHHHTTCEEEECSG
T ss_pred             HHHHhCCCEEEEeCC
Confidence            234567888888764

>1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A

Probab=100.00  E-value=1.5e-39  Score=297.01  Aligned_cols=243  Identities=21%  Similarity=0.218  Sum_probs=210.5

Q ss_pred             cceEEecCCCC-C----CCCCCCCCCCCCCCcEEEEeeeeecChhhHHHHcCCCCCCCCCCCcCCCceeEEEEEEccCCC
Q psy1959          13 SDLLLYNGSGD-A----KPTLPLVPGFEFSGTIIEKKMMTRINSSDLLLYNGSGDAKPTLPLVPGFEFSGTVIEVADTKS   87 (296)
Q Consensus        13 ~~~~~~~~~~~-~----~~~p~~~~~~~~~~evlvkv~~~~i~~~D~~~~~g~~~~~~~~p~~~G~e~~G~V~~v~~~~~   87 (296)
                      ||++++++++. .    .|.|+|.++     ||+|||.+++||++|++.+.|.++....+|.++|||++|+|+++     
T Consensus         1 Mka~~~~~~g~~l~~~~~~~P~~~~~-----eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~v~GhE~~G~V~~v-----   70 (339)
T 1rjw_A            1 MKAAVVEQFKEPLKIKEVEKPTISYG-----EVLVRIKACGVCHTDLHAAHGDWPVKPKLPLIPGHEGVGIVEEV-----   70 (339)
T ss_dssp             CEEEEBSSTTSCCEEEECCCCCCCTT-----EEEEEEEEEEECHHHHHHHHTCSSSCCCSSBCCCSCEEEEEEEE-----
T ss_pred             CeEEEEcCCCCCcEEEEeeCCCCCCC-----EEEEEEEEEeEchhhHHHhcCCCCcCCCCCeeccccceEEEEEE-----
Confidence            67888887773 3    677888889     99999999999999999999977644567999999999999999     


Q ss_pred             CCCCCCCCCCCCCCCCEEEEec--------------------------CCCCCcccceEeeeCCceEECCCCCCHHHHhh
Q psy1959          88 SSTEEDDEEDVLQVGDKVLALN--------------------------KELLHGFSDQCVVHTNDVFKIPEKMTFEHAAS  141 (296)
Q Consensus        88 ~~~~~g~~v~~~~~Gd~V~~~~--------------------------~~~~g~~~~~~~v~~~~~~~iP~~~~~~~aa~  141 (296)
                           |++|++|++||||+...                          ....|+|+||+++|++.++++|++++++++|+
T Consensus        71 -----G~~v~~~~vGdrV~~~~~~~~cg~C~~C~~g~~~~C~~~~~~g~~~~G~~aey~~v~~~~~~~~P~~~~~~~aa~  145 (339)
T 1rjw_A           71 -----GPGVTHLKVGDRVGIPWLYSACGHCDYCLSGQETLCEHQKNAGYSVDGGYAEYCRAAADYVVKIPDNLSFEEAAP  145 (339)
T ss_dssp             -----CTTCCSCCTTCEEEECSEEECCSCSHHHHTTCGGGCTTCEEBTTTBCCSSBSEEEEEGGGCEECCTTSCHHHHGG
T ss_pred             -----CCCCCcCCCCCEEEEecCCCCCCCCchhhCcCcccCCCcceeecCCCCcceeeEEechHHEEECCCCCCHHHhhh
Confidence                 99999999999998631                          01259999999999999999999999999999


Q ss_pred             hccHHHHHHHHHHHHcCCCCCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCcEEEEcCCchhHH
Q psy1959         142 LADSYSTAQIVFSRHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLV  221 (296)
Q Consensus       142 l~~~~~ta~~~l~~~~~~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  221 (296)
                      ++.++.|||+++.+ .++++|++|+|+|+ |++|++++|+| +..|++|++++++++++++++++|++.++++++ .++.
T Consensus       146 l~~~~~ta~~~l~~-~~~~~g~~VlV~Ga-G~vG~~~~~~a-~~~Ga~Vi~~~~~~~~~~~~~~lGa~~~~d~~~-~~~~  221 (339)
T 1rjw_A          146 IFCAGVTTYKALKV-TGAKPGEWVAIYGI-GGLGHVAVQYA-KAMGLNVVAVDIGDEKLELAKELGADLVVNPLK-EDAA  221 (339)
T ss_dssp             GGTHHHHHHHHHHH-HTCCTTCEEEEECC-STTHHHHHHHH-HHTTCEEEEECSCHHHHHHHHHTTCSEEECTTT-SCHH
T ss_pred             hhhhHHHHHHHHHh-cCCCCCCEEEEECC-CHHHHHHHHHH-HHcCCEEEEEeCCHHHHHHHHHCCCCEEecCCC-ccHH
Confidence            99999999999955 48999999999999 88999999999 678999999999999999999999999888876 6777


Q ss_pred             HHHHHHhCCCcccEEEECCCC-ccHHHHHHHhhccCceEEe----------ecccceeeeeEEeccc
Q psy1959         222 NKVLEVSGGKYANVVFEAVGG-EDKTDLIRQKGAWAALTFT----------NEKSLVNKVLEVSGGK  277 (296)
Q Consensus       222 ~~i~~~~~~~g~d~vld~~g~-~~~~~~~~~lg~~~g~~~~----------~~~~~~~k~~~i~g~~  277 (296)
                      +.+.+.+  .++|++||++|. +.+..+++++ +++|++..          +...++.|++++.|++
T Consensus       222 ~~~~~~~--~~~d~vid~~g~~~~~~~~~~~l-~~~G~~v~~g~~~~~~~~~~~~~~~~~~~i~g~~  285 (339)
T 1rjw_A          222 KFMKEKV--GGVHAAVVTAVSKPAFQSAYNSI-RRGGACVLVGLPPEEMPIPIFDTVLNGIKIIGSI  285 (339)
T ss_dssp             HHHHHHH--SSEEEEEESSCCHHHHHHHHHHE-EEEEEEEECCCCSSEEEEEHHHHHHTTCEEEECC
T ss_pred             HHHHHHh--CCCCEEEECCCCHHHHHHHHHHh-hcCCEEEEecccCCCCccCHHHHHhCCcEEEEec
Confidence            8888877  489999999998 7899999999 77776632          2234556788888765

>1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP}

Probab=100.00  E-value=3.1e-40  Score=300.61  Aligned_cols=247  Identities=22%  Similarity=0.296  Sum_probs=209.3

Q ss_pred             cceEEecCCCCC-------CCCCCCCCCCCCCCcEEEEeeeeecChhhHHHHcCCC-CCC-CCCCCcCCCceeEEEEEEc
Q psy1959          13 SDLLLYNGSGDA-------KPTLPLVPGFEFSGTIIEKKMMTRINSSDLLLYNGSG-DAK-PTLPLVPGFEFSGTVIEVA   83 (296)
Q Consensus        13 ~~~~~~~~~~~~-------~~~p~~~~~~~~~~evlvkv~~~~i~~~D~~~~~g~~-~~~-~~~p~~~G~e~~G~V~~v~   83 (296)
                      ||++++++++..       .|.|.|.++     ||+|||.+++||++|++.+.|.+ +.. ..+|.++|||++|+|+++ 
T Consensus         2 Mka~~~~~~g~~~~l~~~~~~~P~~~~~-----eVlVkv~a~gi~~~D~~~~~G~~~~~~~~~~p~i~G~e~~G~V~~v-   75 (333)
T 1wly_A            2 VMAAVIHKKGGPDNFVWEEVKVGSPGPG-----QVRLRNTAIGVNFLDTYHRAGIPHPLVVGEPPIVVGFEAAAVVEEV-   75 (333)
T ss_dssp             CEEEEESSCSSGGGEEEEECCCCCCCTT-----EEEEEEEEEEECHHHHHHHC----------CCEECCCEEEEEEEEE-
T ss_pred             cEEEEEcccCCcceeEEEeccCCCCCCC-----eEEEEEEEEecCHHHHHHhCCCcCCCCCCCCCccccceeEEEEEEE-
Confidence            666776665432       677888889     99999999999999999999866 221 357999999999999999 


Q ss_pred             cCCCCCCCCCCCCCCCCCCCEEEEecCCCCCcccceEeeeCCceEECCCCCCHHH--HhhhccHHHHHHHHHHHHcCCCC
Q psy1959          84 DTKSSSTEEDDEEDVLQVGDKVLALNKELLHGFSDQCVVHTNDVFKIPEKMTFEH--AASLADSYSTAQIVFSRHAKLKE  161 (296)
Q Consensus        84 ~~~~~~~~~g~~v~~~~~Gd~V~~~~~~~~g~~~~~~~v~~~~~~~iP~~~~~~~--aa~l~~~~~ta~~~l~~~~~~~~  161 (296)
                               |++|++|++||||+.... ..|+|+||+++|++.++++|+++++++  +|++++++.|||+++.+.+++++
T Consensus        76 ---------G~~v~~~~~GdrV~~~~~-~~G~~aey~~v~~~~~~~iP~~~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~  145 (333)
T 1wly_A           76 ---------GPGVTDFTVGERVCTCLP-PLGAYSQERLYPAEKLIKVPKDLDLDDVHLAGLMLKGMTAQYLLHQTHKVKP  145 (333)
T ss_dssp             ---------CTTCCSCCTTCEEEECSS-SCCCSBSEEEEEGGGCEECCTTCCCCHHHHHHHHHHHHHHHHHHHTTSCCCT
T ss_pred             ---------CCCCCCCCCCCEEEEecC-CCCcceeEEEecHHHcEeCCCCCChHHhCccchhhhHHHHHHHHHHhhCCCC
Confidence                     999999999999977541 149999999999999999999999999  89999999999999977889999


Q ss_pred             CcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCcEEEEcCCchhHHHHHHHHhCCCcccEEEECCC
Q psy1959         162 KQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNKVLEVSGGKYANVVFEAVG  241 (296)
Q Consensus       162 g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~g~d~vld~~g  241 (296)
                      |++|+|+|++|++|++++|++ +..|++|+++++++++.+.++++|++.++++++ .++.+.+.+.+++.++|++|||+|
T Consensus       146 g~~vlV~Ga~ggiG~~~~~~a-~~~G~~Vi~~~~~~~~~~~~~~~g~~~~~d~~~-~~~~~~i~~~~~~~~~d~vi~~~g  223 (333)
T 1wly_A          146 GDYVLIHAAAGGMGHIMVPWA-RHLGATVIGTVSTEEKAETARKLGCHHTINYST-QDFAEVVREITGGKGVDVVYDSIG  223 (333)
T ss_dssp             TCEEEETTTTSTTHHHHHHHH-HHTTCEEEEEESSHHHHHHHHHHTCSEEEETTT-SCHHHHHHHHHTTCCEEEEEECSC
T ss_pred             CCEEEEECCccHHHHHHHHHH-HHCCCEEEEEeCCHHHHHHHHHcCCCEEEECCC-HHHHHHHHHHhCCCCCeEEEECCc
Confidence            999999999999999999999 668999999999999999999999998888876 678888888887778999999999


Q ss_pred             CccHHHHHHHhhccCceEEee-----------cc-cceeee--eEEecccc
Q psy1959         242 GEDKTDLIRQKGAWAALTFTN-----------EK-SLVNKV--LEVSGGKY  278 (296)
Q Consensus       242 ~~~~~~~~~~lg~~~g~~~~~-----------~~-~~~~k~--~~i~g~~~  278 (296)
                      ++.+..+++++ +++|++..-           .. .++.|+  +++.|++.
T Consensus       224 ~~~~~~~~~~l-~~~G~iv~~g~~~~~~~~~~~~~~~~~~~~~~~i~g~~~  273 (333)
T 1wly_A          224 KDTLQKSLDCL-RPRGMCAAYGHASGVADPIRVVEDLGVRGSLFITRPALW  273 (333)
T ss_dssp             TTTHHHHHHTE-EEEEEEEECCCTTCCCCCCCHHHHTTTTTSCEEECCCGG
T ss_pred             HHHHHHHHHhh-ccCCEEEEEecCCCCcCCCChhHhhhhcCCcEEEEEeeh
Confidence            99999999999 777776331           11 455677  88888754

>3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A

Probab=100.00  E-value=5.7e-40  Score=301.13  Aligned_cols=226  Identities=21%  Similarity=0.238  Sum_probs=204.3

Q ss_pred             cceEEecCCCCC----CCCCCCCCCCCCCCcEEEEeeeeecChhhHH-HHcCCCCCCCCCCCcCCCceeEEEEEEccCCC
Q psy1959          13 SDLLLYNGSGDA----KPTLPLVPGFEFSGTIIEKKMMTRINSSDLL-LYNGSGDAKPTLPLVPGFEFSGTVIEVADTKS   87 (296)
Q Consensus        13 ~~~~~~~~~~~~----~~~p~~~~~~~~~~evlvkv~~~~i~~~D~~-~~~g~~~~~~~~p~~~G~e~~G~V~~v~~~~~   87 (296)
                      ||+++++++++.    .|.|+|.++     ||+|||.+++||++|++ ++.|.++  ..+|.++|||++|+|+++     
T Consensus         1 MkA~~~~~~~~~~~~e~~~P~~~~~-----eVlVkv~a~gi~~~D~~~~~~g~~~--~~~p~v~G~E~~G~V~~v-----   68 (352)
T 3fpc_A            1 MKGFAMLSIGKVGWIEKEKPAPGPF-----DAIVRPLAVAPCTSDIHTVFEGAIG--ERHNMILGHEAVGEVVEV-----   68 (352)
T ss_dssp             CEEEEEEETTEEEEEECCCCCCCTT-----CEEEEEEEEECCHHHHHHHHSCTTC--CCSSEECCCEEEEEEEEE-----
T ss_pred             CeEEEEccCCCceEEeCCCCCCCCC-----eEEEEeCEEeEcccchHHHhCCCCC--CCCCcccCCcceEEEEEE-----
Confidence            788888888766    788888889     99999999999999999 6688765  356999999999999999     


Q ss_pred             CCCCCCCCCCCCCCCCEEEEec----------------------------CCCCCcccceEeeeCC--ceEECCCCCCHH
Q psy1959          88 SSTEEDDEEDVLQVGDKVLALN----------------------------KELLHGFSDQCVVHTN--DVFKIPEKMTFE  137 (296)
Q Consensus        88 ~~~~~g~~v~~~~~Gd~V~~~~----------------------------~~~~g~~~~~~~v~~~--~~~~iP~~~~~~  137 (296)
                           |++|++|++||||++..                            ....|+|+||+++++.  .++++|++++++
T Consensus        69 -----G~~v~~~~vGdrV~~~~~~~c~~c~~c~~g~~~~~~~~~~~~~~~~~~~G~~aey~~v~~~~~~~~~iP~~~~~~  143 (352)
T 3fpc_A           69 -----GSEVKDFKPGDRVVVPAITPDWRTSEVQRGYHQHSGGMLAGWKFSNVKDGVFGEFFHVNDADMNLAHLPKEIPLE  143 (352)
T ss_dssp             -----CTTCCSCCTTCEEEECSBCCCSSSHHHHTTCGGGTTSTTTTBCBTTTBCCSSBSCEEESSHHHHCEECCTTSCHH
T ss_pred             -----CCCCCcCCCCCEEEEccccCCCCchhhcCCCcCCccccccccccccCCCCcccceEEeccccCeEEECCCCCCHH
Confidence                 99999999999999632                            1136999999999986  899999999999


Q ss_pred             HHhhhccHHHHHHHHHHHHcCCCCCcEEEEEcCCCcHHHHHHHHHHHhCCC-EEEEEeCCcchHHHHHhcCCcEEEEcCC
Q psy1959         138 HAASLADSYSTAQIVFSRHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKA-KVIGVCNSEDKTDLIRQKGAWAALTFTN  216 (296)
Q Consensus       138 ~aa~l~~~~~ta~~~l~~~~~~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~-~Vi~~~~~~~~~~~~~~~g~~~~~~~~~  216 (296)
                      +||.++.+++|||+++ +.+++++|++|+|+|+ |++|++++|+| +..|+ +|++++++++|+++++++|++.++++++
T Consensus       144 ~aa~~~~~~~ta~~al-~~~~~~~g~~VlV~Ga-G~vG~~a~qla-~~~Ga~~Vi~~~~~~~~~~~~~~lGa~~vi~~~~  220 (352)
T 3fpc_A          144 AAVMIPDMMTTGFHGA-ELANIKLGDTVCVIGI-GPVGLMSVAGA-NHLGAGRIFAVGSRKHCCDIALEYGATDIINYKN  220 (352)
T ss_dssp             HHTTTTTHHHHHHHHH-HHTTCCTTCCEEEECC-SHHHHHHHHHH-HTTTCSSEEEECCCHHHHHHHHHHTCCEEECGGG
T ss_pred             HHhhccchhHHHHHHH-HhcCCCCCCEEEEECC-CHHHHHHHHHH-HHcCCcEEEEECCCHHHHHHHHHhCCceEEcCCC
Confidence            9999999999999999 7899999999999996 99999999999 67899 8999999999999999999999999987


Q ss_pred             chhHHHHHHHHhCCCcccEEEECCCC-ccHHHHHHHhhccCceEE
Q psy1959         217 EKSLVNKVLEVSGGKYANVVFEAVGG-EDKTDLIRQKGAWAALTF  260 (296)
Q Consensus       217 ~~~~~~~i~~~~~~~g~d~vld~~g~-~~~~~~~~~lg~~~g~~~  260 (296)
                       .++.+.+++.++++++|++||++|+ +.+..+++++ +++|++.
T Consensus       221 -~~~~~~v~~~t~g~g~D~v~d~~g~~~~~~~~~~~l-~~~G~~v  263 (352)
T 3fpc_A          221 -GDIVEQILKATDGKGVDKVVIAGGDVHTFAQAVKMI-KPGSDIG  263 (352)
T ss_dssp             -SCHHHHHHHHTTTCCEEEEEECSSCTTHHHHHHHHE-EEEEEEE
T ss_pred             -cCHHHHHHHHcCCCCCCEEEECCCChHHHHHHHHHH-hcCCEEE
Confidence             7889999999988899999999999 6899999999 7777763

>1h2b_A Alcohol dehydrogenase; oxidoreductase, archaea, hyperthermophIle, zinc; HET: OCA NAJ; 1.62A {Aeropyrum pernix} SCOP: b.35.1.2 c.2.1.1

Probab=100.00  E-value=3.8e-40  Score=303.15  Aligned_cols=245  Identities=23%  Similarity=0.265  Sum_probs=208.7

Q ss_pred             CCcceEEecCCCC-C----CCCCC-CCCCCCCCCcEEEEeeeeecChhhHHHHcCCCC--CCCCCCCcCCCceeEEEEEE
Q psy1959          11 NSSDLLLYNGSGD-A----KPTLP-LVPGFEFSGTIIEKKMMTRINSSDLLLYNGSGD--AKPTLPLVPGFEFSGTVIEV   82 (296)
Q Consensus        11 ~~~~~~~~~~~~~-~----~~~p~-~~~~~~~~~evlvkv~~~~i~~~D~~~~~g~~~--~~~~~p~~~G~e~~G~V~~v   82 (296)
                      .+||++++++++. .    .|.|+ |.++     ||||||.+++||++|++.+.|.++  ....+|.++|||++|+|+++
T Consensus        14 ~~mka~~~~~~g~~l~~~~~p~P~~~~~~-----eVlVkv~a~gi~~~D~~~~~g~~~~~~~~~~p~v~G~E~~G~V~~v   88 (359)
T 1h2b_A           14 ERLKAARLHEYNKPLRIEDVDYPRLEGRF-----DVIVRIAGAGVCHTDLHLVQGMWHELLQPKLPYTLGHENVGYIEEV   88 (359)
T ss_dssp             ---CEEEESSTTSCCEEECCCCCCCBTTB-----CEEEEEEEEECCHHHHHHHHTTTHHHHCCCSSEECCCCEEEEEEEE
T ss_pred             hhceEEEEecCCCCcEEEEccCCCCCCCC-----EEEEEEEEEEecccchHHHhCCCccccCCCCCeecCcCceEEEEEE
Confidence            3699999999874 3    67777 7888     999999999999999999998764  12467999999999999999


Q ss_pred             ccCCCCCCCCCCCCCCCCCCCEEEEecC-------------------------CCCCcccceEeeeCCceEECCCCCCHH
Q psy1959          83 ADTKSSSTEEDDEEDVLQVGDKVLALNK-------------------------ELLHGFSDQCVVHTNDVFKIPEKMTFE  137 (296)
Q Consensus        83 ~~~~~~~~~~g~~v~~~~~Gd~V~~~~~-------------------------~~~g~~~~~~~v~~~~~~~iP~~~~~~  137 (296)
                                |++|++|++||||+++..                         ...|+|+||+++|++.++++|++++++
T Consensus        89 ----------G~~v~~~~vGdrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~~G~~~~G~~aey~~v~~~~~~~iP~~~~~~  158 (359)
T 1h2b_A           89 ----------AEGVEGLEKGDPVILHPAVTDGTCLACRAGEDMHCENLEFPGLNIDGGFAEFMRTSHRSVIKLPKDISRE  158 (359)
T ss_dssp             ----------CTTCCSCCTTCEEEECSCBCCSCSHHHHTTCGGGCTTCBCBTTTBCCSSBSEEEECGGGEEECCTTCCHH
T ss_pred             ----------CCCCCCCCCCCEEEeCCCCCCCCChhhhCcCcccCCCccccccCCCCcccceEEechHhEEECCCCCCHH
Confidence                      999999999999987531                         135999999999999999999999999


Q ss_pred             HHh---hhccHHHHHHHHHHHH-cCCCCCcEEEEEcCCCcHHHHHHHHHHHhC-CCEEEEEeCCcchHHHHHhcCCcEEE
Q psy1959         138 HAA---SLADSYSTAQIVFSRH-AKLKEKQTVLVTAAGGGLGLAAVDMATKIY-KAKVIGVCNSEDKTDLIRQKGAWAAL  212 (296)
Q Consensus       138 ~aa---~l~~~~~ta~~~l~~~-~~~~~g~~vlI~Ga~g~vG~aa~~la~~~~-g~~Vi~~~~~~~~~~~~~~~g~~~~~  212 (296)
                      +||   ++++++.|||+++.+. +++++|++|+|+|+ |++|++++|+| +.. |++|++++++++|+++++++|++.++
T Consensus       159 ~aa~~~~l~~~~~ta~~al~~~~~~~~~g~~VlV~Ga-G~vG~~avqla-k~~~Ga~Vi~~~~~~~~~~~~~~lGa~~vi  236 (359)
T 1h2b_A          159 KLVEMAPLADAGITAYRAVKKAARTLYPGAYVAIVGV-GGLGHIAVQLL-KVMTPATVIALDVKEEKLKLAERLGADHVV  236 (359)
T ss_dssp             HHHHTGGGGTHHHHHHHHHHHHHTTCCTTCEEEEECC-SHHHHHHHHHH-HHHCCCEEEEEESSHHHHHHHHHTTCSEEE
T ss_pred             HHhhccchhhhHHHHHHHHHhhccCCCCCCEEEEECC-CHHHHHHHHHH-HHcCCCeEEEEeCCHHHHHHHHHhCCCEEE
Confidence            999   8889999999999665 89999999999999 99999999999 567 99999999999999999999999999


Q ss_pred             EcCCchhHHHHHHHHhCCCcccEEEECCCCc---cHHHHHHHhhccCceEEe---------ecccceeeeeEEeccc
Q psy1959         213 TFTNEKSLVNKVLEVSGGKYANVVFEAVGGE---DKTDLIRQKGAWAALTFT---------NEKSLVNKVLEVSGGK  277 (296)
Q Consensus       213 ~~~~~~~~~~~i~~~~~~~g~d~vld~~g~~---~~~~~~~~lg~~~g~~~~---------~~~~~~~k~~~i~g~~  277 (296)
                      ++++ . +.+.++++++++++|++||++|++   .+..++++   ++|++..         +...++.|++++.|++
T Consensus       237 ~~~~-~-~~~~v~~~~~g~g~Dvvid~~G~~~~~~~~~~~~~---~~G~~v~~g~~~~~~~~~~~~~~~~~~i~g~~  308 (359)
T 1h2b_A          237 DARR-D-PVKQVMELTRGRGVNVAMDFVGSQATVDYTPYLLG---RMGRLIIVGYGGELRFPTIRVISSEVSFEGSL  308 (359)
T ss_dssp             ETTS-C-HHHHHHHHTTTCCEEEEEESSCCHHHHHHGGGGEE---EEEEEEECCCSSCCCCCHHHHHHTTCEEEECC
T ss_pred             eccc-h-HHHHHHHHhCCCCCcEEEECCCCchHHHHHHHhhc---CCCEEEEEeCCCCCCCCHHHHHhCCcEEEEec
Confidence            9987 5 788888888777999999999995   77777776   5555532         2224566888888875

>3gqv_A Enoyl reductase; medium-chain reductase (MDR superfamily), rossmann fold, NAD binding, oxidoreductase; HET: NAP; 1.74A {Aspergillus terreus} PDB: 3b6z_A* 3b70_A*

Probab=100.00  E-value=2e-39  Score=299.65  Aligned_cols=232  Identities=21%  Similarity=0.243  Sum_probs=201.2

Q ss_pred             eecccCCcceEEecCCCCC-----CCCCCCCCCCCCCCcEEEEeeeeecChhhHHHHcCCCCCCCCCCCcCCCceeEEEE
Q psy1959           6 QCCALNSSDLLLYNGSGDA-----KPTLPLVPGFEFSGTIIEKKMMTRINSSDLLLYNGSGDAKPTLPLVPGFEFSGTVI   80 (296)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~-----~~~p~~~~~~~~~~evlvkv~~~~i~~~D~~~~~g~~~~~~~~p~~~G~e~~G~V~   80 (296)
                      +|..-.+|++++++++++.     .|.|+|.++     ||||||.+++||++|++++.|.    ..+|.++|||++|+|+
T Consensus         5 tm~~p~~mkA~v~~~~~~l~~~~~~~~p~~~~~-----eVlVkv~a~gi~~~D~~~~~g~----~~~p~v~G~e~~G~V~   75 (371)
T 3gqv_A            5 PFIPPPQQTALTVNDHDEVTVWNAAPCPMLPRD-----QVYVRVEAVAINPSDTSMRGQF----ATPWAFLGTDYAGTVV   75 (371)
T ss_dssp             CCCCCSCEEEEEECTTSCEEEEEEECCCCCCTT-----SEEEEEEEEECCGGGGC---------CCTTSCCCSEEEEEEE
T ss_pred             CCCCchhceeEEEcCCCceEEeccCCCCCCCCC-----EEEEEEEEEEcCHHHHHHhhcC----CCCCccCccccEEEEE
Confidence            3443457999999998765     467778888     9999999999999999988763    3458999999999999


Q ss_pred             EEccCCCCCCCCCCCCCCCCCCCEEEEecC------CCCCcccceEeeeCCceEECCCCCCHHHHhhhccHHHHHHHHHH
Q psy1959          81 EVADTKSSSTEEDDEEDVLQVGDKVLALNK------ELLHGFSDQCVVHTNDVFKIPEKMTFEHAASLADSYSTAQIVFS  154 (296)
Q Consensus        81 ~v~~~~~~~~~~g~~v~~~~~Gd~V~~~~~------~~~g~~~~~~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~l~  154 (296)
                      ++          |++|++|++||||++.+.      ...|+|+||+++|++.++++|+++++++||.++.++.|||+++.
T Consensus        76 ~v----------G~~v~~~~~GdrV~~~~~~~~~~~~~~G~~aey~~v~~~~~~~~P~~~~~~~aa~~~~~~~ta~~~l~  145 (371)
T 3gqv_A           76 AV----------GSDVTHIQVGDRVYGAQNEMCPRTPDQGAFSQYTVTRGRVWAKIPKGLSFEQAAALPAGISTAGLAMK  145 (371)
T ss_dssp             EE----------CTTCCSCCTTCEEEEECCTTCTTCTTCCSSBSEEECCTTCEEECCTTCCHHHHHTSHHHHHHHHHHHH
T ss_pred             Ee----------CCCCCCCCCCCEEEEeccCCCCCCCCCCcCcCeEEEchhheEECCCCCCHHHHhhhhhhHHHHHHHHH
Confidence            99          999999999999998763      23599999999999999999999999999999999999999997


Q ss_pred             HH-cCC-----------CCCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCcEEEEcCCchhHHH
Q psy1959         155 RH-AKL-----------KEKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVN  222 (296)
Q Consensus       155 ~~-~~~-----------~~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  222 (296)
                      +. .++           ++|++|+|+|++|++|++++|+| +..|++|+++. +++|+++++++|++.++++++ .++.+
T Consensus       146 ~~~~~~~~~~~~~~~~~~~g~~VlV~Ga~G~vG~~a~qla-~~~Ga~Vi~~~-~~~~~~~~~~lGa~~vi~~~~-~~~~~  222 (371)
T 3gqv_A          146 LLGLPLPSPSADQPPTHSKPVYVLVYGGSTATATVTMQML-RLSGYIPIATC-SPHNFDLAKSRGAEEVFDYRA-PNLAQ  222 (371)
T ss_dssp             HHTCCCCCSSCSSCCCCSSCCEEEEESTTSHHHHHHHHHH-HHTTCEEEEEE-CGGGHHHHHHTTCSEEEETTS-TTHHH
T ss_pred             hhccCCCCCccccccccCCCcEEEEECCCcHHHHHHHHHH-HHCCCEEEEEe-CHHHHHHHHHcCCcEEEECCC-chHHH
Confidence            77 553           89999999999999999999999 67899999887 789999999999999999987 78999


Q ss_pred             HHHHHhCCCcccEEEECCCC-ccHHHHHHHhhccCceEE
Q psy1959         223 KVLEVSGGKYANVVFEAVGG-EDKTDLIRQKGAWAALTF  260 (296)
Q Consensus       223 ~i~~~~~~~g~d~vld~~g~-~~~~~~~~~lg~~~g~~~  260 (296)
                      .+++.+++ ++|++|||+|+ +.+..+++++.+.+|++.
T Consensus       223 ~v~~~t~g-~~d~v~d~~g~~~~~~~~~~~l~~~~G~iv  260 (371)
T 3gqv_A          223 TIRTYTKN-NLRYALDCITNVESTTFCFAAIGRAGGHYV  260 (371)
T ss_dssp             HHHHHTTT-CCCEEEESSCSHHHHHHHHHHSCTTCEEEE
T ss_pred             HHHHHccC-CccEEEECCCchHHHHHHHHHhhcCCCEEE
Confidence            99999876 59999999999 689999999943667664

>1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A*

Probab=100.00  E-value=1.4e-39  Score=301.06  Aligned_cols=244  Identities=18%  Similarity=0.219  Sum_probs=210.8

Q ss_pred             CcceEEecCCCCC-----CCCCCCCCCCCCCCcEEEEeeeeecChhhHHHHcCCCCCCCCCCCcCCCceeEEEEEEccCC
Q psy1959          12 SSDLLLYNGSGDA-----KPTLPLVPGFEFSGTIIEKKMMTRINSSDLLLYNGSGDAKPTLPLVPGFEFSGTVIEVADTK   86 (296)
Q Consensus        12 ~~~~~~~~~~~~~-----~~~p~~~~~~~~~~evlvkv~~~~i~~~D~~~~~g~~~~~~~~p~~~G~e~~G~V~~v~~~~   86 (296)
                      +|+++++++++..     .|.|+|.++     ||||||.+++||++|++.+.|. + ...+|.++|||++|+|+++    
T Consensus         8 ~mka~~~~~~g~~l~~~~~~~p~~~~~-----eVlVkv~a~gi~~~D~~~~~g~-~-~~~~P~v~GhE~~G~V~~v----   76 (376)
T 1e3i_A            8 KCKAAIAWKTGSPLCIEEIEVSPPKAC-----EVRIQVIATCVCPTDINATDPK-K-KALFPVVLGHECAGIVESV----   76 (376)
T ss_dssp             EEEEEEBCSTTSCCEEEEEEECCCCTT-----EEEEEEEEEECCHHHHHTTCTT-S-CCCSSBCCCCEEEEEEEEE----
T ss_pred             heeEEEEecCCCCeEEEEeeCCCCCCC-----eEEEEEeEEeEchhhHHHhcCC-C-CCCCCcccCccccEEEEEE----
Confidence            5899999988753     677788889     9999999999999999999886 2 2467999999999999999    


Q ss_pred             CCCCCCCCCCCCCCCCCEEEEecC------------------------------C--------------------CCCcc
Q psy1959          87 SSSTEEDDEEDVLQVGDKVLALNK------------------------------E--------------------LLHGF  116 (296)
Q Consensus        87 ~~~~~~g~~v~~~~~Gd~V~~~~~------------------------------~--------------------~~g~~  116 (296)
                            |++|++|++||||++...                              +                    ..|+|
T Consensus        77 ------G~~v~~~~vGdrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~~~~~~~~~G~~~~g~~~~~~~g~~~~~~~~~G~~  150 (376)
T 1e3i_A           77 ------GPGVTNFKPGDKVIPFFAPQCKRCKLCLSPLTNLCGKLRNFKYPTIDQELMEDRTSRFTCKGRSIYHFMGVSSF  150 (376)
T ss_dssp             ------CTTCCSCCTTCEEEECSSCCCSSSHHHHCTTCCCCTTCCCSSCGGGSSCSCTTSCCSEEETTEEEBCCTTTCCS
T ss_pred             ------CCCCccCCCCCEEEECCcCCCCCCccccCCCcccCcCcCccccccccccccccCccccccCCcccccccCCccc
Confidence                  999999999999997521                              0                    13899


Q ss_pred             cceEeeeCCceEECCCCCCHHHHhhhccHHHHHHHHHHHHcCCCCCcEEEEEcCCCcHHHHHHHHHHHhCCC-EEEEEeC
Q psy1959         117 SDQCVVHTNDVFKIPEKMTFEHAASLADSYSTAQIVFSRHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKA-KVIGVCN  195 (296)
Q Consensus       117 ~~~~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~-~Vi~~~~  195 (296)
                      +||+++|++.++++|+++++++||++++++.|||+++.+.+++++|++|+|+|+ |++|++++|+| +..|+ +|+++++
T Consensus       151 aey~~v~~~~~~~iP~~l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~Ga-G~vG~~aiqla-k~~Ga~~Vi~~~~  228 (376)
T 1e3i_A          151 SQYTVVSEANLARVDDEANLERVCLIGCGFSSGYGAAINTAKVTPGSTCAVFGL-GCVGLSAIIGC-KIAGASRIIAIDI  228 (376)
T ss_dssp             BSEEEEEGGGEEECCTTCCHHHHGGGGTHHHHHHHHHHTTSCCCTTCEEEEECC-SHHHHHHHHHH-HHTTCSEEEEECS
T ss_pred             eeEEEeccccEEECCCCCCHHHhhhhccHHHHHHHHHHHhcCCCCCCEEEEECC-CHHHHHHHHHH-HHcCCCeEEEEcC
Confidence            999999999999999999999999999999999999878899999999999996 99999999999 67899 8999999


Q ss_pred             CcchHHHHHhcCCcEEEEcCC-chhHHHHHHHHhCCCcccEEEECCCC-ccHHHHHHHhhccC-ceEEee----------
Q psy1959         196 SEDKTDLIRQKGAWAALTFTN-EKSLVNKVLEVSGGKYANVVFEAVGG-EDKTDLIRQKGAWA-ALTFTN----------  262 (296)
Q Consensus       196 ~~~~~~~~~~~g~~~~~~~~~-~~~~~~~i~~~~~~~g~d~vld~~g~-~~~~~~~~~lg~~~-g~~~~~----------  262 (296)
                      +++++++++++|++.++++++ ..++.+.+++.+++ ++|++||++|+ +.+..+++++ +++ |++..-          
T Consensus       229 ~~~~~~~a~~lGa~~vi~~~~~~~~~~~~v~~~~~~-g~Dvvid~~G~~~~~~~~~~~l-~~~~G~iv~~G~~~~~~~~~  306 (376)
T 1e3i_A          229 NGEKFPKAKALGATDCLNPRELDKPVQDVITELTAG-GVDYSLDCAGTAQTLKAAVDCT-VLGWGSCTVVGAKVDEMTIP  306 (376)
T ss_dssp             CGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHHTS-CBSEEEESSCCHHHHHHHHHTB-CTTTCEEEECCCSSSEEEEE
T ss_pred             CHHHHHHHHHhCCcEEEccccccchHHHHHHHHhCC-CccEEEECCCCHHHHHHHHHHh-hcCCCEEEEECCCCCccccC
Confidence            999999999999999998863 24688888888876 99999999998 7899999999 777 776432          


Q ss_pred             cccceeeeeEEeccc
Q psy1959         263 EKSLVNKVLEVSGGK  277 (296)
Q Consensus       263 ~~~~~~k~~~i~g~~  277 (296)
                      ...++.++ ++.|++
T Consensus       307 ~~~~~~~~-~i~g~~  320 (376)
T 1e3i_A          307 TVDVILGR-SINGTF  320 (376)
T ss_dssp             HHHHHTTC-EEEECS
T ss_pred             HHHhhccC-eEEEEe
Confidence            22344566 777765

>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A*

Probab=100.00  E-value=2e-40  Score=306.27  Aligned_cols=243  Identities=21%  Similarity=0.248  Sum_probs=215.3

Q ss_pred             CcceEEecCCCCC----CCCCCCCCCCCCCCcEEEEeeeeecChhhHHHHcCCCCCCCCCCCcCCCceeEEEEEEccCCC
Q psy1959          12 SSDLLLYNGSGDA----KPTLPLVPGFEFSGTIIEKKMMTRINSSDLLLYNGSGDAKPTLPLVPGFEFSGTVIEVADTKS   87 (296)
Q Consensus        12 ~~~~~~~~~~~~~----~~~p~~~~~~~~~~evlvkv~~~~i~~~D~~~~~g~~~~~~~~p~~~G~e~~G~V~~v~~~~~   87 (296)
                      +||+++++++++.    .|.|+|.++     ||+|||.+++||++|++.+.|.++  ..+|.++|||++|+|+++     
T Consensus        23 ~mkA~v~~~~~~l~~~~~~~P~~~~~-----eVlVkv~a~gi~~~D~~~~~G~~~--~~~p~v~G~e~~G~V~~v-----   90 (370)
T 4ej6_A           23 MMKAVRLESVGNISVRNVGIPEPGPD-----DLLVKVEACGICGTDRHLLHGEFP--STPPVTLGHEFCGIVVEA-----   90 (370)
T ss_dssp             EEEEEEEEETTEEEEEEEECCCCCTT-----EEEEEEEEEECCHHHHHHHTTSSC--CCSSEECCCSEEEEEEEE-----
T ss_pred             heEEEEEecCCceEEEEccCCCCCCC-----eEEEEEEEEeecHHHHHHHcCCCC--CCCCeecCcceEEEEEEE-----
Confidence            5899999988765    688888999     999999999999999999999864  567999999999999999     


Q ss_pred             CCCCCCCCCCCCCCCCEEEEec-------------------------CCCCCcccceEeeeCCceEECCCCCCHHHHhhh
Q psy1959          88 SSTEEDDEEDVLQVGDKVLALN-------------------------KELLHGFSDQCVVHTNDVFKIPEKMTFEHAASL  142 (296)
Q Consensus        88 ~~~~~g~~v~~~~~Gd~V~~~~-------------------------~~~~g~~~~~~~v~~~~~~~iP~~~~~~~aa~l  142 (296)
                           |++|++|++||||++.+                         ....|+|+||+++|++.++++|+++++++|| +
T Consensus        91 -----G~~v~~~~vGdrV~~~~~~~cg~C~~C~~g~~~~C~~~~~~g~~~~G~~aey~~v~~~~~~~~P~~~~~~~aa-l  164 (370)
T 4ej6_A           91 -----GSAVRDIAPGARITGDPNISCGRCPQCQAGRVNLCRNLRAIGIHRDGGFAEYVLVPRKQAFEIPLTLDPVHGA-F  164 (370)
T ss_dssp             -----CTTCCSSCTTCEEEECCEECCSSSHHHHTTCGGGCTTCEEBTTTBCCSSBSEEEEEGGGEEEECTTSCTTGGG-G
T ss_pred             -----CCCCCCCCCCCEEEECCCCCCCCChHHhCcCcccCCCccccCCCCCCcceEEEEEchhhEEECCCCCCHHHHh-h
Confidence                 99999999999999732                         1235999999999999999999999999998 7


Q ss_pred             ccHHHHHHHHHHHHcCCCCCcEEEEEcCCCcHHHHHHHHHHHhCCC-EEEEEeCCcchHHHHHhcCCcEEEEcCCchhHH
Q psy1959         143 ADSYSTAQIVFSRHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKA-KVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLV  221 (296)
Q Consensus       143 ~~~~~ta~~~l~~~~~~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~-~Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  221 (296)
                      +.++.+||+++ +.+++++|++|+|+|+ |++|++++|+| +..|+ +|+++++++++.++++++|++.++++++ .++.
T Consensus       165 ~~~~~ta~~~l-~~~~~~~g~~VlV~Ga-G~vG~~aiqla-k~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~-~~~~  240 (370)
T 4ej6_A          165 CEPLACCLHGV-DLSGIKAGSTVAILGG-GVIGLLTVQLA-RLAGATTVILSTRQATKRRLAEEVGATATVDPSA-GDVV  240 (370)
T ss_dssp             HHHHHHHHHHH-HHHTCCTTCEEEEECC-SHHHHHHHHHH-HHTTCSEEEEECSCHHHHHHHHHHTCSEEECTTS-SCHH
T ss_pred             hhHHHHHHHHH-HhcCCCCCCEEEEECC-CHHHHHHHHHH-HHcCCCEEEEECCCHHHHHHHHHcCCCEEECCCC-cCHH
Confidence            78999999999 7899999999999998 99999999999 67899 9999999999999999999999999987 7888


Q ss_pred             HHHHH---HhCCCcccEEEECCCC-ccHHHHHHHhhccCceEEe------------ecccceeeeeEEecccc
Q psy1959         222 NKVLE---VSGGKYANVVFEAVGG-EDKTDLIRQKGAWAALTFT------------NEKSLVNKVLEVSGGKY  278 (296)
Q Consensus       222 ~~i~~---~~~~~g~d~vld~~g~-~~~~~~~~~lg~~~g~~~~------------~~~~~~~k~~~i~g~~~  278 (296)
                      +.+++   .+++ ++|++||++|+ +.+..+++++ +++|++.+            +...++.|++++.|++.
T Consensus       241 ~~i~~~~~~~~g-g~Dvvid~~G~~~~~~~~~~~l-~~~G~vv~~G~~~~~~~~~~~~~~~~~~~~~i~g~~~  311 (370)
T 4ej6_A          241 EAIAGPVGLVPG-GVDVVIECAGVAETVKQSTRLA-KAGGTVVILGVLPQGEKVEIEPFDILFRELRVLGSFI  311 (370)
T ss_dssp             HHHHSTTSSSTT-CEEEEEECSCCHHHHHHHHHHE-EEEEEEEECSCCCTTCCCCCCHHHHHHTTCEEEECCS
T ss_pred             HHHHhhhhccCC-CCCEEEECCCCHHHHHHHHHHh-ccCCEEEEEeccCCCCccccCHHHHHhCCcEEEEecc
Confidence            88888   6666 99999999997 6899999999 77777633            22356778999999873

>1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=100.00  E-value=2.3e-39  Score=294.13  Aligned_cols=228  Identities=24%  Similarity=0.363  Sum_probs=202.5

Q ss_pred             cceEEecCCCCC-------CCCCCCCCCCCCCCcEEEEeeeeecChhhHHHHcCCCCCCCCCCCcCCCceeEEEEEEccC
Q psy1959          13 SDLLLYNGSGDA-------KPTLPLVPGFEFSGTIIEKKMMTRINSSDLLLYNGSGDAKPTLPLVPGFEFSGTVIEVADT   85 (296)
Q Consensus        13 ~~~~~~~~~~~~-------~~~p~~~~~~~~~~evlvkv~~~~i~~~D~~~~~g~~~~~~~~p~~~G~e~~G~V~~v~~~   85 (296)
                      ||++++++++..       .|.|.|.++     ||+|||.+++||++|++.+.|.++. ..+|.++|||++|+|+++   
T Consensus         2 Mka~~~~~~g~~~~l~~~~~~~p~~~~~-----eVlVkv~a~gi~~~D~~~~~g~~~~-~~~p~v~G~E~~G~V~~v---   72 (327)
T 1qor_A            2 ATRIEFHKHGGPEVLQAVEFTPADPAEN-----EIQVENKAIGINFIDTYIRSGLYPP-PSLPSGLGTEAAGIVSKV---   72 (327)
T ss_dssp             CEEEEBSSCCSGGGCEEEECCCCCCCTT-----EEEEEEEEEECCHHHHHHHHTSSCC-SSSSBCCCSCEEEEEEEE---
T ss_pred             cEEEEEcCCCChhheEEeccCCCCCCCC-----EEEEEEEEEecCHHHHHHhCCCCCC-CCCCCCCCceeEEEEEEE---
Confidence            677777765532       677788888     9999999999999999999987642 457999999999999999   


Q ss_pred             CCCCCCCCCCCCCCCCCCEEEEecCCCCCcccceEeeeCCceEECCCCCCHHHHhhhccHHHHHHHHHHHHcCCCCCcEE
Q psy1959          86 KSSSTEEDDEEDVLQVGDKVLALNKELLHGFSDQCVVHTNDVFKIPEKMTFEHAASLADSYSTAQIVFSRHAKLKEKQTV  165 (296)
Q Consensus        86 ~~~~~~~g~~v~~~~~Gd~V~~~~~~~~g~~~~~~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~v  165 (296)
                             |+++++|++|||| ++....+|+|+||+++|++.++++|+++++++||+++++++|||+++.+.+++++|++|
T Consensus        73 -------G~~v~~~~~GdrV-~~~g~~~G~~aey~~v~~~~~~~iP~~l~~~~aa~l~~~~~ta~~al~~~~~~~~g~~v  144 (327)
T 1qor_A           73 -------GSGVKHIKAGDRV-VYAQSALGAYSSVHNIIADKAAILPAAISFEQAAASFLKGLTVYYLLRKTYEIKPDEQF  144 (327)
T ss_dssp             -------CTTCCSCCTTCEE-EESCCSSCCSBSEEEEEGGGEEECCTTSCHHHHHHHHHHHHHHHHHHHTTSCCCTTCEE
T ss_pred             -------CCCCCCCCCCCEE-EECCCCCceeeeEEEecHHHcEECCCCCCHHHHHHhhhHHHHHHHHHHHhhCCCCCCEE
Confidence                   9999999999999 44312259999999999999999999999999999999999999999778899999999


Q ss_pred             EEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCcEEEEcCCchhHHHHHHHHhCCCcccEEEECCCCccH
Q psy1959         166 LVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNKVLEVSGGKYANVVFEAVGGEDK  245 (296)
Q Consensus       166 lI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~g~d~vld~~g~~~~  245 (296)
                      +|+|++|++|++++|++ +..|++|+++++++++.+.++++|++.++++.+ .++.+.+.+.+.+.++|++|||+|.+.+
T Consensus       145 lV~Ga~ggiG~~~~~~a-~~~G~~V~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~~~~~~~~~~D~vi~~~g~~~~  222 (327)
T 1qor_A          145 LFHAAAGGVGLIACQWA-KALGAKLIGTVGTAQKAQSALKAGAWQVINYRE-EDLVERLKEITGGKKVRVVYDSVGRDTW  222 (327)
T ss_dssp             EESSTTBHHHHHHHHHH-HHHTCEEEEEESSHHHHHHHHHHTCSEEEETTT-SCHHHHHHHHTTTCCEEEEEECSCGGGH
T ss_pred             EEECCCCHHHHHHHHHH-HHcCCEEEEEeCCHHHHHHHHHcCCCEEEECCC-ccHHHHHHHHhCCCCceEEEECCchHHH
Confidence            99999999999999999 567999999999999999999999998888877 6788888888877789999999998899


Q ss_pred             HHHHHHhhccCceEE
Q psy1959         246 TDLIRQKGAWAALTF  260 (296)
Q Consensus       246 ~~~~~~lg~~~g~~~  260 (296)
                      +.+++++ +.+|++.
T Consensus       223 ~~~~~~l-~~~G~iv  236 (327)
T 1qor_A          223 ERSLDCL-QRRGLMV  236 (327)
T ss_dssp             HHHHHTE-EEEEEEE
T ss_pred             HHHHHHh-cCCCEEE
Confidence            9999999 7777764

>2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ...

Probab=100.00  E-value=2.2e-39  Score=299.50  Aligned_cols=228  Identities=23%  Similarity=0.262  Sum_probs=202.7

Q ss_pred             CcceEEecCCCCC-----CCCCCCCCCCCCCCcEEEEeeeeecChhhHHHHcCCCCCCCCCCCcCCCceeEEEEEEccCC
Q psy1959          12 SSDLLLYNGSGDA-----KPTLPLVPGFEFSGTIIEKKMMTRINSSDLLLYNGSGDAKPTLPLVPGFEFSGTVIEVADTK   86 (296)
Q Consensus        12 ~~~~~~~~~~~~~-----~~~p~~~~~~~~~~evlvkv~~~~i~~~D~~~~~g~~~~~~~~p~~~G~e~~G~V~~v~~~~   86 (296)
                      +|++++++++++.     .|.|+|.++     ||||||.+++||++|++++.|.++.  .+|.++|||++|+|+++    
T Consensus         8 ~mkA~~~~~~g~~l~~~~~~~p~~~~~-----eVlVkv~a~gi~~~D~~~~~g~~~~--~~P~v~GhE~~G~V~~v----   76 (374)
T 2jhf_A            8 KCKAAVLWEEKKPFSIEEVEVAPPKAH-----EVRIKMVATGICRSDDHVVSGTLVT--PLPVIAGHEAAGIVESI----   76 (374)
T ss_dssp             EEEEEEBCSTTSCCEEEEEEECCCCTT-----EEEEEEEEEECCHHHHHHHHTSSCC--CSSBCCCCSEEEEEEEE----
T ss_pred             eEEEEEEecCCCceEEEEccCCCCCCC-----eEEEEEeEEeechhhHHHHcCCCCC--CCCcccCcCceEEEEEE----
Confidence            5899999988753     577888889     9999999999999999999987653  37999999999999999    


Q ss_pred             CCCCCCCCCCCCCCCCCEEEEecC--------------------------C--------------------CCCcccceE
Q psy1959          87 SSSTEEDDEEDVLQVGDKVLALNK--------------------------E--------------------LLHGFSDQC  120 (296)
Q Consensus        87 ~~~~~~g~~v~~~~~Gd~V~~~~~--------------------------~--------------------~~g~~~~~~  120 (296)
                            |++|++|++||||++...                          +                    ..|+|+||+
T Consensus        77 ------G~~v~~~~vGdrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~~~~~g~~~~g~~~~~~~g~~~~~~~~~G~~aey~  150 (374)
T 2jhf_A           77 ------GEGVTTVRPGDKVIPLFTPQCGKCRVCKHPEGNFCLKNDLSMPRGTMQDGTSRFTCRGKPIHHFLGTSTFSQYT  150 (374)
T ss_dssp             ------CTTCCSCCTTCEEEECSSCCCSCSHHHHSTTCCCCTTCSSSSCCCSCTTSCCSEEETTEEEBCSTTTCCSBSEE
T ss_pred             ------CCCCCCCCCCCEEEECCCCCCCCCccccCCCcCcCCCCccccccccccCCcccccccccccccccCCccCeeEE
Confidence                  999999999999997531                          0                    138999999


Q ss_pred             eeeCCceEECCCCCCHHHHhhhccHHHHHHHHHHHHcCCCCCcEEEEEcCCCcHHHHHHHHHHHhCCC-EEEEEeCCcch
Q psy1959         121 VVHTNDVFKIPEKMTFEHAASLADSYSTAQIVFSRHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKA-KVIGVCNSEDK  199 (296)
Q Consensus       121 ~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~-~Vi~~~~~~~~  199 (296)
                      ++|++.++++|+++++++||++++++.|||+++.+.+++++|++|+|+|+ |++|++++|+| +..|+ +|+++++++++
T Consensus       151 ~v~~~~~~~iP~~l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~Ga-G~vG~~a~qla-~~~Ga~~Vi~~~~~~~~  228 (374)
T 2jhf_A          151 VVDEISVAKIDAASPLEKVCLIGCGFSTGYGSAVKVAKVTQGSTCAVFGL-GGVGLSVIMGC-KAAGAARIIGVDINKDK  228 (374)
T ss_dssp             EEEGGGEEECCTTCCHHHHGGGGTHHHHHHHHHHTTTCCCTTCEEEEECC-SHHHHHHHHHH-HHTTCSEEEEECSCGGG
T ss_pred             EEchHHeEECCCCCCHHHhhhhccHHHHHHHHHHhccCCCCCCEEEEECC-CHHHHHHHHHH-HHcCCCeEEEEcCCHHH
Confidence            99999999999999999999999999999999878899999999999996 99999999999 67899 89999999999


Q ss_pred             HHHHHhcCCcEEEEcCC-chhHHHHHHHHhCCCcccEEEECCCC-ccHHHHHHHhhccC-ceEE
Q psy1959         200 TDLIRQKGAWAALTFTN-EKSLVNKVLEVSGGKYANVVFEAVGG-EDKTDLIRQKGAWA-ALTF  260 (296)
Q Consensus       200 ~~~~~~~g~~~~~~~~~-~~~~~~~i~~~~~~~g~d~vld~~g~-~~~~~~~~~lg~~~-g~~~  260 (296)
                      +++++++|++.++++++ ..++.+.+++.+++ ++|++||++|. +.+..+++++ +++ |++.
T Consensus       229 ~~~~~~lGa~~vi~~~~~~~~~~~~~~~~~~~-g~D~vid~~g~~~~~~~~~~~l-~~~~G~iv  290 (374)
T 2jhf_A          229 FAKAKEVGATECVNPQDYKKPIQEVLTEMSNG-GVDFSFEVIGRLDTMVTALSCC-QEAYGVSV  290 (374)
T ss_dssp             HHHHHHTTCSEEECGGGCSSCHHHHHHHHTTS-CBSEEEECSCCHHHHHHHHHHB-CTTTCEEE
T ss_pred             HHHHHHhCCceEecccccchhHHHHHHHHhCC-CCcEEEECCCCHHHHHHHHHHh-hcCCcEEE
Confidence            99999999999988763 24678888888865 99999999998 6899999999 777 7764

>3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis}

Probab=100.00  E-value=1.5e-40  Score=300.57  Aligned_cols=220  Identities=19%  Similarity=0.241  Sum_probs=188.9

Q ss_pred             cCCcceEEecC-CCCC----CCCCCCCCCCCCCCcEEEEeeeeecChhhHHHHcCCCCCCCCCCCcCCCceeEEEEEEcc
Q psy1959          10 LNSSDLLLYNG-SGDA----KPTLPLVPGFEFSGTIIEKKMMTRINSSDLLLYNGSGDAKPTLPLVPGFEFSGTVIEVAD   84 (296)
Q Consensus        10 ~~~~~~~~~~~-~~~~----~~~p~~~~~~~~~~evlvkv~~~~i~~~D~~~~~g~~~~~~~~p~~~G~e~~G~V~~v~~   84 (296)
                      |.+||++++++ ++..    .|.|+|.++     ||+|||.+++||++|++.+.|.++. ..+|.++|||++|+|+++  
T Consensus         2 M~tMka~~~~~~~~~l~~~~~~~P~~~~~-----eVlVkv~a~gi~~~D~~~~~g~~~~-~~~p~i~G~e~~G~V~~v--   73 (315)
T 3goh_A            2 MEQHQVWAYQTKTHSVTLNSVDIPALAAD-----DILVQNQAIGINPVDWKFIKANPIN-WSNGHVPGVDGAGVIVKV--   73 (315)
T ss_dssp             CCEEEEEEEETTTTEEEEEEEECCCCCTT-----EEEEEEEEEEECHHHHHHHHHCTTC-CCTTCCCCSEEEEEEEEE--
T ss_pred             CcceEEEEEeCCCCeeEEEecCCCCCCCC-----EEEEEEEEEecCHHHHHHHcCCCCc-CCCCCEeeeeeEEEEEEe--
Confidence            55799999994 5444    678888999     9999999999999999999987754 478999999999999999  


Q ss_pred             CCCCCCCCCCCCCCCCCCCEEEEecC-CCCCcccceEeeeCCceEECCCCCCHHHHhhhccHHHHHHHHHHHHcCCCCCc
Q psy1959          85 TKSSSTEEDDEEDVLQVGDKVLALNK-ELLHGFSDQCVVHTNDVFKIPEKMTFEHAASLADSYSTAQIVFSRHAKLKEKQ  163 (296)
Q Consensus        85 ~~~~~~~~g~~v~~~~~Gd~V~~~~~-~~~g~~~~~~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~  163 (296)
                              |+++++|++||||++... ...|+|+||+++|++.++++|+++++++||+|+++++|||+++ +.+++++|+
T Consensus        74 --------G~~v~~~~vGdrV~~~~~~~~~G~~aey~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~al-~~~~~~~g~  144 (315)
T 3goh_A           74 --------GAKVDSKMLGRRVAYHTSLKRHGSFAEFTVLNTDRVMTLPDNLSFERAAALPCPLLTAWQAF-EKIPLTKQR  144 (315)
T ss_dssp             --------CTTSCGGGTTCEEEEECCTTSCCSSBSEEEEETTSEEECCTTSCHHHHHTSHHHHHHHHHHH-TTSCCCSCC
T ss_pred             --------CCCCCCCCCCCEEEEeCCCCCCcccccEEEEcHHHhccCcCCCCHHHHhhCccHHHHHHHHH-hhcCCCCCC
Confidence                    999999999999999763 2259999999999999999999999999999999999999999 899999999


Q ss_pred             EEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCcEEEEcCCchhHHHHHHHHhCCCcccEEEECCCCc
Q psy1959         164 TVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNKVLEVSGGKYANVVFEAVGGE  243 (296)
Q Consensus       164 ~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~g~d~vld~~g~~  243 (296)
                      +|+|+|+ |++|++++|+| +..|++|++++ +++|+++++++|++.+++  +    .+.+     ++++|++|||+|++
T Consensus       145 ~VlV~Ga-G~vG~~a~qla-k~~Ga~Vi~~~-~~~~~~~~~~lGa~~v~~--d----~~~v-----~~g~Dvv~d~~g~~  210 (315)
T 3goh_A          145 EVLIVGF-GAVNNLLTQML-NNAGYVVDLVS-ASLSQALAAKRGVRHLYR--E----PSQV-----TQKYFAIFDAVNSQ  210 (315)
T ss_dssp             EEEEECC-SHHHHHHHHHH-HHHTCEEEEEC-SSCCHHHHHHHTEEEEES--S----GGGC-----CSCEEEEECC----
T ss_pred             EEEEECC-CHHHHHHHHHH-HHcCCEEEEEE-ChhhHHHHHHcCCCEEEc--C----HHHh-----CCCccEEEECCCch
Confidence            9999999 99999999999 66899999999 999999999999988773  1    1222     56999999999998


Q ss_pred             cHHHHHHHhhccCceEEe
Q psy1959         244 DKTDLIRQKGAWAALTFT  261 (296)
Q Consensus       244 ~~~~~~~~lg~~~g~~~~  261 (296)
                      ....+++++ +++|++..
T Consensus       211 ~~~~~~~~l-~~~G~~v~  227 (315)
T 3goh_A          211 NAAALVPSL-KANGHIIC  227 (315)
T ss_dssp             ---TTGGGE-EEEEEEEE
T ss_pred             hHHHHHHHh-cCCCEEEE
Confidence            778899999 77777643

>4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli}

Probab=100.00  E-value=1e-39  Score=298.40  Aligned_cols=242  Identities=22%  Similarity=0.239  Sum_probs=209.3

Q ss_pred             cceEEecCCCCC----CCCCC-CCCCCCCCCcEEEEeeeeecChhhHHHHcCCCCCCCCCCCcCCCceeEEEEEEccCCC
Q psy1959          13 SDLLLYNGSGDA----KPTLP-LVPGFEFSGTIIEKKMMTRINSSDLLLYNGSGDAKPTLPLVPGFEFSGTVIEVADTKS   87 (296)
Q Consensus        13 ~~~~~~~~~~~~----~~~p~-~~~~~~~~~evlvkv~~~~i~~~D~~~~~g~~~~~~~~p~~~G~e~~G~V~~v~~~~~   87 (296)
                      ||++++++++..    .|.|+ |.|+     ||||||.++|||++|++.+.|..+  ..+|+++|||++|+|+++     
T Consensus         1 MkAvv~~~~g~l~v~e~p~P~~~~~~-----eVlVkv~a~gi~~sD~~~~~g~~~--~~~P~i~G~E~~G~V~~v-----   68 (346)
T 4a2c_A            1 MKSVVNDTDGIVRVAESVIPEIKHQD-----EVRVKIASSGLCGSDLPRIFKNGA--HYYPITLGHEFSGYIDAV-----   68 (346)
T ss_dssp             CEEEEECSSSCEEEEECCCCCCCSTT-----EEEEEEEEEECCTTHHHHHHSSCS--SSSSBCCCCEEEEEEEEE-----
T ss_pred             CCEEEEecCCCEEEEEEeCCCCCCcC-----EEEEEEEEEEECHHHHHHHcCCCC--CCCCccccEEEEEEEEEE-----
Confidence            899999998877    67776 4678     999999999999999999988765  467999999999999999     


Q ss_pred             CCCCCCCCCCCCCCCCEEEEecC-------------------------CCCCcccceEeeeCCceEECCCCCCHHHHhhh
Q psy1959          88 SSTEEDDEEDVLQVGDKVLALNK-------------------------ELLHGFSDQCVVHTNDVFKIPEKMTFEHAASL  142 (296)
Q Consensus        88 ~~~~~g~~v~~~~~Gd~V~~~~~-------------------------~~~g~~~~~~~v~~~~~~~iP~~~~~~~aa~l  142 (296)
                           |++|+++++||+|.....                         ..+|+|+||+++|+++++++|+++++++||.+
T Consensus        69 -----G~~V~~~~~GdrV~~~~~~~~g~c~~c~~g~~~~c~~~~~~g~~~~G~~aey~~v~~~~~~~iP~~l~~~~aa~l  143 (346)
T 4a2c_A           69 -----GSGVDDLHPGDAVACVPLLPCFTCPECLKGFYSQCAKYDFIGSRRDGGFAEYIVVKRKNVFALPTDMPIEDGAFI  143 (346)
T ss_dssp             -----CTTCCSCCTTCEEEECCEECCSCSHHHHTTCGGGCSSCEEBTTTBCCSSBSEEEEEGGGEEECCTTSCGGGGGGH
T ss_pred             -----CCCcccccCCCeEEeeeccCCCCcccccCCccccCCCcccccCCCCcccccccccchheEEECCCCCCHHHHHhc
Confidence                 999999999999987431                         23599999999999999999999999999865


Q ss_pred             ccHHHHHHHHHHHHcCCCCCcEEEEEcCCCcHHHHHHHHHHHhCCC-EEEEEeCCcchHHHHHhcCCcEEEEcCCchhHH
Q psy1959         143 ADSYSTAQIVFSRHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKA-KVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLV  221 (296)
Q Consensus       143 ~~~~~ta~~~l~~~~~~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~-~Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  221 (296)
                       .++.++++++ ...++++|++|+|+|+ |++|++++|+| +..|+ .+++++++++|+++++++|++.++++++ .+..
T Consensus       144 -~~~~~~~~~~-~~~~~~~g~~VlV~Ga-G~vG~~aiq~a-k~~G~~~vi~~~~~~~k~~~a~~lGa~~~i~~~~-~~~~  218 (346)
T 4a2c_A          144 -EPITVGLHAF-HLAQGCENKNVIIIGA-GTIGLLAIQCA-VALGAKSVTAIDISSEKLALAKSFGAMQTFNSSE-MSAP  218 (346)
T ss_dssp             -HHHHHHHHHH-HHTTCCTTSEEEEECC-SHHHHHHHHHH-HHTTCSEEEEEESCHHHHHHHHHTTCSEEEETTT-SCHH
T ss_pred             -hHHHHHHHHH-HHhccCCCCEEEEECC-CCcchHHHHHH-HHcCCcEEEEEechHHHHHHHHHcCCeEEEeCCC-CCHH
Confidence             3556666665 7889999999999997 99999999999 66888 5678888999999999999999999988 7888


Q ss_pred             HHHHHHhCCCcccEEEECCCC-ccHHHHHHHhhccCceEEee-------------cccceeeeeEEeccc
Q psy1959         222 NKVLEVSGGKYANVVFEAVGG-EDKTDLIRQKGAWAALTFTN-------------EKSLVNKVLEVSGGK  277 (296)
Q Consensus       222 ~~i~~~~~~~g~d~vld~~g~-~~~~~~~~~lg~~~g~~~~~-------------~~~~~~k~~~i~g~~  277 (296)
                      +.+++++++.++|+++|++|. +.++.+++++ +++|.+.+.             ...++.|++++.|++
T Consensus       219 ~~~~~~~~~~g~d~v~d~~G~~~~~~~~~~~l-~~~G~~v~~g~~~~~~~~~~~~~~~~~~k~~~i~G~~  287 (346)
T 4a2c_A          219 QMQSVLRELRFNQLILETAGVPQTVELAVEIA-GPHAQLALVGTLHQDLHLTSATFGKILRKELTVIGSW  287 (346)
T ss_dssp             HHHHHHGGGCSSEEEEECSCSHHHHHHHHHHC-CTTCEEEECCCCSSCEEECHHHHHHHHHHTCEEEECC
T ss_pred             HHHHhhcccCCcccccccccccchhhhhhhee-cCCeEEEEEeccCCCccccccCHHHHhhceeEEEEEe
Confidence            888888888899999999998 6899999999 777766321             124677899999986

>2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A*

Probab=100.00  E-value=3.3e-40  Score=302.26  Aligned_cols=246  Identities=22%  Similarity=0.281  Sum_probs=213.2

Q ss_pred             cCCcceEEecCCC-CC----CCCCCCCCCCCCCCcEEEEeeeeecChhhHHHHcC-CCC-CCCCCCCcCCCceeEEEEEE
Q psy1959          10 LNSSDLLLYNGSG-DA----KPTLPLVPGFEFSGTIIEKKMMTRINSSDLLLYNG-SGD-AKPTLPLVPGFEFSGTVIEV   82 (296)
Q Consensus        10 ~~~~~~~~~~~~~-~~----~~~p~~~~~~~~~~evlvkv~~~~i~~~D~~~~~g-~~~-~~~~~p~~~G~e~~G~V~~v   82 (296)
                      |-+||++++++++ ..    .|.|+|.++     ||||||.+++||++|++.+.| .++ ....+|.++|||++|+|+++
T Consensus         2 m~~mka~~~~~~g~~l~~~~~~~P~~~~~-----eVlVkv~a~gi~~~D~~~~~g~~~~~~~~~~p~v~G~E~~G~V~~v   76 (348)
T 2d8a_A            2 SEKMVAIMKTKPGYGAELVEVDVPKPGPG-----EVLIKVLATSICGTDLHIYEWNEWAQSRIKPPQIMGHEVAGEVVEI   76 (348)
T ss_dssp             -CEEEEEEECSSSSSCEEEEEECCCCCTT-----EEEEEEEEEECCHHHHHHHHTCTTHHHHCCSSEECCCEEEEEEEEE
T ss_pred             CCcceEEEEECCCCCEEEEECCCCCCCcC-----EEEEEEeEEEecHHHHHHHcCCCCCcccCCCCCccCccceEEEEEE
Confidence            4468999999988 44    677888889     999999999999999999998 432 12357899999999999999


Q ss_pred             ccCCCCCCCCCCCCCCCCCCCEEEEecC-------------------------CCCCcccceEeeeCCceEECCCCCCHH
Q psy1959          83 ADTKSSSTEEDDEEDVLQVGDKVLALNK-------------------------ELLHGFSDQCVVHTNDVFKIPEKMTFE  137 (296)
Q Consensus        83 ~~~~~~~~~~g~~v~~~~~Gd~V~~~~~-------------------------~~~g~~~~~~~v~~~~~~~iP~~~~~~  137 (296)
                                |++|++|++||||++...                         ...|+|+||+++|++.++++|++++++
T Consensus        77 ----------G~~v~~~~vGdrV~~~~~~~cg~C~~C~~g~~~~C~~~~~~g~~~~G~~aey~~v~~~~~~~iP~~~~~~  146 (348)
T 2d8a_A           77 ----------GPGVEGIEVGDYVSVETHIVCGKCYACRRGQYHVCQNTKIFGVDTDGVFAEYAVVPAQNIWKNPKSIPPE  146 (348)
T ss_dssp             ----------CTTCCSCCTTCEEEECCEECCSCCC------------CEETTTSSCCSSBSEEEEEGGGEEECCTTSCHH
T ss_pred             ----------CCCCCcCCCCCEEEEcCCCCCCCChhhhCcCcccCCCCCeecCCCCCcCcceEEeChHHeEECCCCCCHH
Confidence                      999999999999997531                         135999999999999999999999999


Q ss_pred             HHhhhccHHHHHHHHHHHHcCCCCCcEEEEEcCCCcHHHHHHHHHHHhCCC-EEEEEeCCcchHHHHHhcCCcEEEEcCC
Q psy1959         138 HAASLADSYSTAQIVFSRHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKA-KVIGVCNSEDKTDLIRQKGAWAALTFTN  216 (296)
Q Consensus       138 ~aa~l~~~~~ta~~~l~~~~~~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~-~Vi~~~~~~~~~~~~~~~g~~~~~~~~~  216 (296)
                      +||.+ .++.|||+++ +.+++ +|++|+|+|+ |++|++++|+| +..|+ +|++++++++++++++++|++.++++++
T Consensus       147 ~aa~~-~~~~ta~~~l-~~~~~-~g~~VlV~Ga-G~vG~~~~q~a-~~~Ga~~Vi~~~~~~~~~~~~~~~Ga~~~~~~~~  221 (348)
T 2d8a_A          147 YATLQ-EPLGNAVDTV-LAGPI-SGKSVLITGA-GPLGLLGIAVA-KASGAYPVIVSEPSDFRRELAKKVGADYVINPFE  221 (348)
T ss_dssp             HHTTH-HHHHHHHHHH-TTSCC-TTCCEEEECC-SHHHHHHHHHH-HHTTCCSEEEECSCHHHHHHHHHHTCSEEECTTT
T ss_pred             HHHhh-hHHHHHHHHH-HhcCC-CCCEEEEECC-CHHHHHHHHHH-HHcCCCEEEEECCCHHHHHHHHHhCCCEEECCCC
Confidence            99876 5899999999 77889 9999999999 99999999999 67899 9999999999999999999999998877


Q ss_pred             chhHHHHHHHHhCCCcccEEEECCCC-ccHHHHHHHhhccCceEEe----------ec-ccceeeeeEEeccc
Q psy1959         217 EKSLVNKVLEVSGGKYANVVFEAVGG-EDKTDLIRQKGAWAALTFT----------NE-KSLVNKVLEVSGGK  277 (296)
Q Consensus       217 ~~~~~~~i~~~~~~~g~d~vld~~g~-~~~~~~~~~lg~~~g~~~~----------~~-~~~~~k~~~i~g~~  277 (296)
                       .++.+.+++.++++++|++||++|. +.+..+++++ +++|++..          +. ..++.|++++.|++
T Consensus       222 -~~~~~~v~~~~~g~g~D~vid~~g~~~~~~~~~~~l-~~~G~iv~~g~~~~~~~~~~~~~~~~~~~~i~g~~  292 (348)
T 2d8a_A          222 -EDVVKEVMDITDGNGVDVFLEFSGAPKALEQGLQAV-TPAGRVSLLGLYPGKVTIDFNNLIIFKALTIYGIT  292 (348)
T ss_dssp             -SCHHHHHHHHTTTSCEEEEEECSCCHHHHHHHHHHE-EEEEEEEECCCCSSCCCCCHHHHTTTTTCEEEECC
T ss_pred             -cCHHHHHHHHcCCCCCCEEEECCCCHHHHHHHHHHH-hcCCEEEEEccCCCCcccCchHHHHhCCcEEEEec
Confidence             6888889998887899999999998 7889999999 77776632          22 34567888888875

>2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A*

Probab=100.00  E-value=1.9e-39  Score=299.85  Aligned_cols=229  Identities=22%  Similarity=0.250  Sum_probs=203.6

Q ss_pred             CcceEEecCCCCC-----CCCCCCCCCCCCCCcEEEEeeeeecChhhHHHHcCCCCCCCCCCCcCCCceeEEEEEEccCC
Q psy1959          12 SSDLLLYNGSGDA-----KPTLPLVPGFEFSGTIIEKKMMTRINSSDLLLYNGSGDAKPTLPLVPGFEFSGTVIEVADTK   86 (296)
Q Consensus        12 ~~~~~~~~~~~~~-----~~~p~~~~~~~~~~evlvkv~~~~i~~~D~~~~~g~~~~~~~~p~~~G~e~~G~V~~v~~~~   86 (296)
                      +|++++++++++.     .|.|+|.++     ||+|||.+++||++|++++.|.++. ..+|.++|||++|+|+++    
T Consensus         6 ~mkA~~~~~~~~~l~~~~~~~p~~~~~-----eVlVkv~a~gi~~~D~~~~~g~~~~-~~~P~v~GhE~~G~V~~v----   75 (373)
T 2fzw_A            6 KCKAAVAWEAGKPLSIEEIEVAPPKAH-----EVRIKIIATAVCHTDAYTLSGADPE-GCFPVILGHLGAGIVESV----   75 (373)
T ss_dssp             EEEEEEBCSTTSCCEEEEEEECCCCTT-----EEEEEEEEEECCHHHHHHHHTCCTT-CCSSBCCCCEEEEEEEEE----
T ss_pred             ceEEEEEecCCCCcEEEEeeCCCCCCC-----EEEEEEEEEEEchhhHHHhcCCCCC-CCCCccccccccEEEEEE----
Confidence            5899999988753     577888889     9999999999999999999987653 467999999999999999    


Q ss_pred             CCCCCCCCCCCCCCCCCEEEEecC--------------------------C--------------------CCCcccceE
Q psy1959          87 SSSTEEDDEEDVLQVGDKVLALNK--------------------------E--------------------LLHGFSDQC  120 (296)
Q Consensus        87 ~~~~~~g~~v~~~~~Gd~V~~~~~--------------------------~--------------------~~g~~~~~~  120 (296)
                            |++|++|++||||++...                          +                    ..|+|+||+
T Consensus        76 ------G~~V~~~~vGdrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~~~~~g~~~~g~~~~~~~g~~~~~~~~~G~~aey~  149 (373)
T 2fzw_A           76 ------GEGVTKLKAGDTVIPLYIPQCGECKFCLNPKTNLCQKIRVTQGKGLMPDGTSRFTCKGKTILHYMGTSTFSEYT  149 (373)
T ss_dssp             ------CTTCCSCCTTCEEEECSSCCCSCSHHHHCTTCCCCCTTHHHHHTTCCTTSCCSEEETTEEEBCCTTTCCSBSEE
T ss_pred             ------CCCCCCCCCCCEEEECCCCCCCCChHHcCcCcccCCCcccccccccccCCcccccccccccccccCCccceeEE
Confidence                  999999999999997531                          0                    148999999


Q ss_pred             eeeCCceEECCCCCCHHHHhhhccHHHHHHHHHHHHcCCCCCcEEEEEcCCCcHHHHHHHHHHHhCCC-EEEEEeCCcch
Q psy1959         121 VVHTNDVFKIPEKMTFEHAASLADSYSTAQIVFSRHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKA-KVIGVCNSEDK  199 (296)
Q Consensus       121 ~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~-~Vi~~~~~~~~  199 (296)
                      ++|++.++++|+++++++||++++++.|||+++.+.+++++|++|||+|+ |++|++++|+| +..|+ +|+++++++++
T Consensus       150 ~v~~~~~~~iP~~l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~Ga-G~vG~~avqla-~~~Ga~~Vi~~~~~~~~  227 (373)
T 2fzw_A          150 VVADISVAKIDPLAPLDKVCLLGCGISTGYGAAVNTAKLEPGSVCAVFGL-GGVGLAVIMGC-KVAGASRIIGVDINKDK  227 (373)
T ss_dssp             EEEGGGEEECCTTSCHHHHGGGGTHHHHHHHHHHTTTCCCTTCEEEEECC-SHHHHHHHHHH-HHHTCSEEEEECSCGGG
T ss_pred             EEchhheEECCCCCCHHHHhhhccHHHHHHHHHHhhcCCCCCCEEEEECC-CHHHHHHHHHH-HHcCCCeEEEEcCCHHH
Confidence            99999999999999999999999999999999878899999999999996 99999999999 56799 89999999999


Q ss_pred             HHHHHhcCCcEEEEcCC-chhHHHHHHHHhCCCcccEEEECCCC-ccHHHHHHHhhccC-ceEE
Q psy1959         200 TDLIRQKGAWAALTFTN-EKSLVNKVLEVSGGKYANVVFEAVGG-EDKTDLIRQKGAWA-ALTF  260 (296)
Q Consensus       200 ~~~~~~~g~~~~~~~~~-~~~~~~~i~~~~~~~g~d~vld~~g~-~~~~~~~~~lg~~~-g~~~  260 (296)
                      +++++++|++.++++++ ..++.+.+++.+++ ++|++||++|+ +.+..+++++ +++ |++.
T Consensus       228 ~~~~~~lGa~~vi~~~~~~~~~~~~v~~~~~~-g~D~vid~~g~~~~~~~~~~~l-~~~~G~iv  289 (373)
T 2fzw_A          228 FARAKEFGATECINPQDFSKPIQEVLIEMTDG-GVDYSFECIGNVKVMRAALEAC-HKGWGVSV  289 (373)
T ss_dssp             HHHHHHHTCSEEECGGGCSSCHHHHHHHHTTS-CBSEEEECSCCHHHHHHHHHTB-CTTTCEEE
T ss_pred             HHHHHHcCCceEeccccccccHHHHHHHHhCC-CCCEEEECCCcHHHHHHHHHhh-ccCCcEEE
Confidence            99999999999988763 14688888888876 99999999998 6899999999 777 7764

>1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1

Probab=100.00  E-value=2.8e-39  Score=298.83  Aligned_cols=228  Identities=22%  Similarity=0.203  Sum_probs=203.1

Q ss_pred             CcceEEecCCCCC-----CCCCCCCCCCCCCCcEEEEeeeeecChhhHH-HHcCCCCCCCCCCCcCCCceeEEEEEEccC
Q psy1959          12 SSDLLLYNGSGDA-----KPTLPLVPGFEFSGTIIEKKMMTRINSSDLL-LYNGSGDAKPTLPLVPGFEFSGTVIEVADT   85 (296)
Q Consensus        12 ~~~~~~~~~~~~~-----~~~p~~~~~~~~~~evlvkv~~~~i~~~D~~-~~~g~~~~~~~~p~~~G~e~~G~V~~v~~~   85 (296)
                      +|++++++++++.     .|.|+|.++     ||||||.+++||++|++ .+.|.++  ..+|.++|||++|+|+++   
T Consensus         8 ~mka~~~~~~~~~l~~~~~~~p~~~~~-----eVlVkv~a~gi~~~D~~~~~~g~~~--~~~P~v~GhE~~G~V~~v---   77 (374)
T 1cdo_A            8 KCKAAVAWEANKPLVIEEIEVDVPHAN-----EIRIKIIATGVCHTDLYHLFEGKHK--DGFPVVLGHEGAGIVESV---   77 (374)
T ss_dssp             EEEEEEBCSTTSCCEEEEEEECCCCTT-----EEEEEEEEEECCHHHHHHHHTTCCT--TSCSEECCCCEEEEEEEE---
T ss_pred             eeEEEEEecCCCCeEEEEeeCCCCCCC-----EEEEEEeEEeechhhHHHHhCCCCC--CCCCcccCccceEEEEEE---
Confidence            5899999988753     677888889     99999999999999999 8988765  467999999999999999   


Q ss_pred             CCCCCCCCCCCCCCCCCCEEEEecC--------------------------C--------------------CCCcccce
Q psy1959          86 KSSSTEEDDEEDVLQVGDKVLALNK--------------------------E--------------------LLHGFSDQ  119 (296)
Q Consensus        86 ~~~~~~~g~~v~~~~~Gd~V~~~~~--------------------------~--------------------~~g~~~~~  119 (296)
                             |++|++|++||||++...                          +                    ..|+|+||
T Consensus        78 -------G~~V~~~~vGdrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~~~~~G~~~~g~~~~~~~g~~~~~~~~~G~~aey  150 (374)
T 1cdo_A           78 -------GPGVTEFQPGEKVIPLFISQCGECRFCQSPKTNQCVKGWANESPDVMSPKETRFTCKGRKVLQFLGTSTFSQY  150 (374)
T ss_dssp             -------CTTCCSCCTTCEEEECSSCCCSSSHHHHCTTCCCCSCSGGGTCTTTTSCSCCCEEETTEEEEEGGGTCCSBSE
T ss_pred             -------CCCCccCCCCCEEEeCCCCCCCCChhhcCCCcCcCCCcccccccccccCCccccccCCcccccccCCccceeE
Confidence                   999999999999997531                          0                    13899999


Q ss_pred             EeeeCCceEECCCCCCHHHHhhhccHHHHHHHHHHHHcCCCCCcEEEEEcCCCcHHHHHHHHHHHhCCC-EEEEEeCCcc
Q psy1959         120 CVVHTNDVFKIPEKMTFEHAASLADSYSTAQIVFSRHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKA-KVIGVCNSED  198 (296)
Q Consensus       120 ~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~-~Vi~~~~~~~  198 (296)
                      +++|+++++++|+++++++||++++++.|||+++.+.+++++|++|+|+|+ |++|++++|+| +..|+ +|++++++++
T Consensus       151 ~~v~~~~~~~~P~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~Ga-G~vG~~a~qla-~~~Ga~~Vi~~~~~~~  228 (374)
T 1cdo_A          151 TVVNQIAVAKIDPSAPLDTVCLLGCGVSTGFGAAVNTAKVEPGSTCAVFGL-GAVGLAAVMGC-HSAGAKRIIAVDLNPD  228 (374)
T ss_dssp             EEEEGGGEEECCTTCCHHHHGGGGTHHHHHHHHHHTTTCCCTTCEEEEECC-SHHHHHHHHHH-HHTTCSEEEEECSCGG
T ss_pred             EEEchhheEECCCCCCHHHHhhhccHHHHHHHHHHhccCCCCCCEEEEECC-CHHHHHHHHHH-HHcCCCEEEEEcCCHH
Confidence            999999999999999999999999999999999878899999999999996 99999999999 67899 8999999999


Q ss_pred             hHHHHHhcCCcEEEEcCC-chhHHHHHHHHhCCCcccEEEECCCC-ccHHHHHHHhhccC-ceEE
Q psy1959         199 KTDLIRQKGAWAALTFTN-EKSLVNKVLEVSGGKYANVVFEAVGG-EDKTDLIRQKGAWA-ALTF  260 (296)
Q Consensus       199 ~~~~~~~~g~~~~~~~~~-~~~~~~~i~~~~~~~g~d~vld~~g~-~~~~~~~~~lg~~~-g~~~  260 (296)
                      ++++++++|++.++++++ ..++.+.+++.+++ ++|++||++|. +.+..+++++ +++ |++.
T Consensus       229 ~~~~~~~lGa~~vi~~~~~~~~~~~~~~~~~~~-g~D~vid~~g~~~~~~~~~~~l-~~~~G~iv  291 (374)
T 1cdo_A          229 KFEKAKVFGATDFVNPNDHSEPISQVLSKMTNG-GVDFSLECVGNVGVMRNALESC-LKGWGVSV  291 (374)
T ss_dssp             GHHHHHHTTCCEEECGGGCSSCHHHHHHHHHTS-CBSEEEECSCCHHHHHHHHHTB-CTTTCEEE
T ss_pred             HHHHHHHhCCceEEeccccchhHHHHHHHHhCC-CCCEEEECCCCHHHHHHHHHHh-hcCCcEEE
Confidence            999999999999988863 24678888888876 99999999998 6899999999 777 7764

>1zsy_A Mitochondrial 2-enoyl thioester reductase; medium-chain dehydrogenase/reductase, oxidoreductase, 2-ENOY thioester reductase; 1.75A {Homo sapiens} PDB: 2vcy_A

Probab=100.00  E-value=4e-40  Score=302.77  Aligned_cols=252  Identities=23%  Similarity=0.294  Sum_probs=209.8

Q ss_pred             ecccC-CcceEEecCCCC----C----CCCCCCCCCCCCCCcEEEEeeeeecChhhHHHHcCCCCCCCCCCCcCCCceeE
Q psy1959           7 CCALN-SSDLLLYNGSGD----A----KPTLPLVPGFEFSGTIIEKKMMTRINSSDLLLYNGSGDAKPTLPLVPGFEFSG   77 (296)
Q Consensus         7 ~~~~~-~~~~~~~~~~~~----~----~~~p~~~~~~~~~~evlvkv~~~~i~~~D~~~~~g~~~~~~~~p~~~G~e~~G   77 (296)
                      +..|+ +|+++++.++++    .    .|.|.|+++     ||+|||.+++||++|++.+.|.++....+|.++|||++|
T Consensus        20 ~~~m~~~mka~~~~~~g~~~~~l~~~~~~~P~~~~~-----eVlVkv~a~gi~~~D~~~~~G~~~~~~~~P~v~G~E~~G   94 (357)
T 1zsy_A           20 FQSMPARVRALVYGHHGDPAKVVELKNLELAAVRGS-----DVRVKMLAAPINPSDINMIQGNYGLLPELPAVGGNEGVA   94 (357)
T ss_dssp             CCCCCCCEEEEEESSSSCHHHHEEEEEECCCCCCTT-----EEEEEEEEEECCHHHHHHHHTCSSCCCCSSEECCSCCEE
T ss_pred             hhhCchhhEEEEEecCCCccceEEEeeccCCCCCCC-----EEEEEEEECCCCHHHhhHhcCCCCCCCCCCccccceEEE
Confidence            34454 589999999886    2    577788889     999999999999999999999776545679999999999


Q ss_pred             EEEEEccCCCCCCCCCCCCCCCCCCCEEEEecCCCCCcccceEeeeCCceEECCCCCCHHHHhhhccHHHHHHHHHHHHc
Q psy1959          78 TVIEVADTKSSSTEEDDEEDVLQVGDKVLALNKELLHGFSDQCVVHTNDVFKIPEKMTFEHAASLADSYSTAQIVFSRHA  157 (296)
Q Consensus        78 ~V~~v~~~~~~~~~~g~~v~~~~~Gd~V~~~~~~~~g~~~~~~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~l~~~~  157 (296)
                      +|+++          |++|++|++||||++.... .|+|+||++++++.++++|+++++++||++++++.|||+++.+.+
T Consensus        95 ~V~~v----------G~~v~~~~vGdrV~~~~~~-~G~~aey~~v~~~~~~~iP~~l~~~~Aa~l~~~~~ta~~~l~~~~  163 (357)
T 1zsy_A           95 QVVAV----------GSNVTGLKPGDWVIPANAG-LGTWRTEAVFSEEALIQVPSDIPLQSAATLGVNPCTAYRMLMDFE  163 (357)
T ss_dssp             EEEEE----------CTTCCSCCTTCEEEESSSC-SCCSBSEEEEEGGGEEEECSSSCHHHHHHTTSHHHHHHHHHHHSS
T ss_pred             EEEEe----------CCCCCCCCCCCEEEEcCCC-CccceeEEecCHHHcEECCCCCCHHHHhhhcccHHHHHHHHHHHh
Confidence            99999          9999999999999987531 499999999999999999999999999999999999999998888


Q ss_pred             CCCCCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcc----hHHHHHhcCCcEEEEcCCchhHHHHHHHHhCCC-c
Q psy1959         158 KLKEKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSED----KTDLIRQKGAWAALTFTNEKSLVNKVLEVSGGK-Y  232 (296)
Q Consensus       158 ~~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~----~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~-g  232 (296)
                      ++++|++|||+|++|++|++++|+| +..|+++++++++++    +.++++++|++.++++++  ...+.+.+.+.+. +
T Consensus       164 ~~~~g~~VlV~Ga~G~vG~~aiqla-k~~Ga~vi~~~~~~~~~~~~~~~~~~lGa~~vi~~~~--~~~~~~~~~~~~~~~  240 (357)
T 1zsy_A          164 QLQPGDSVIQNASNSGVGQAVIQIA-AALGLRTINVVRDRPDIQKLSDRLKSLGAEHVITEEE--LRRPEMKNFFKDMPQ  240 (357)
T ss_dssp             CCCTTCEEEESSTTSHHHHHHHHHH-HHHTCEEEEEECCCSCHHHHHHHHHHTTCSEEEEHHH--HHSGGGGGTTSSSCC
T ss_pred             ccCCCCEEEEeCCcCHHHHHHHHHH-HHcCCEEEEEecCccchHHHHHHHHhcCCcEEEecCc--chHHHHHHHHhCCCC
Confidence            9999999999999999999999999 668999888876543    467889999999988743  1123444555433 5


Q ss_pred             ccEEEECCCCccHHHHHHHhhccCceEEeec-----------ccceeeeeEEecccc
Q psy1959         233 ANVVFEAVGGEDKTDLIRQKGAWAALTFTNE-----------KSLVNKVLEVSGGKY  278 (296)
Q Consensus       233 ~d~vld~~g~~~~~~~~~~lg~~~g~~~~~~-----------~~~~~k~~~i~g~~~  278 (296)
                      +|++|||+|++....+++++ +++|++..-.           ..++.|++++.|++.
T Consensus       241 ~Dvvid~~g~~~~~~~~~~l-~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~i~g~~~  296 (357)
T 1zsy_A          241 PRLALNCVGGKSSTELLRQL-ARGGTMVTYGGMAKQPVVASVSLLIFKDLKLRGFWL  296 (357)
T ss_dssp             CSEEEESSCHHHHHHHHTTS-CTTCEEEECCCCTTCCBCCCHHHHHHSCCEEEECCH
T ss_pred             ceEEEECCCcHHHHHHHHhh-CCCCEEEEEecCCCCCCCCCHHHHHhcCceEEEEEc
Confidence            99999999997777899999 7777764321           134568889988764

>1gu7_A Enoyl-[acyl-carrier-protein] reductase [NADPH, B-specific] 1,mitochondrial; oxidoreductase, thioester reduction, fatty acids; 1.70A {Candida tropicalis} SCOP: b.35.1.2 c.2.1.1 PDB: 1guf_A* 1n9g_B* 1n9g_A* 1gyr_A 1h0k_A

Probab=100.00  E-value=5e-40  Score=302.67  Aligned_cols=249  Identities=20%  Similarity=0.250  Sum_probs=210.5

Q ss_pred             CcceEEecCCCC----C----CCCCCCC--CCCCCCCcEEEEeeeeecChhhHHHHcCCCCCCCCCC---------CcCC
Q psy1959          12 SSDLLLYNGSGD----A----KPTLPLV--PGFEFSGTIIEKKMMTRINSSDLLLYNGSGDAKPTLP---------LVPG   72 (296)
Q Consensus        12 ~~~~~~~~~~~~----~----~~~p~~~--~~~~~~~evlvkv~~~~i~~~D~~~~~g~~~~~~~~p---------~~~G   72 (296)
                      +||+++++++++    .    .|.|.|.  ++     ||+|||.+++||++|++.+.|.++....+|         .++|
T Consensus         3 ~mka~~~~~~g~~~~~l~~~~~~~P~p~~~~~-----eVlVkv~a~gi~~~D~~~~~g~~~~~~~~P~~~~~~~p~~i~G   77 (364)
T 1gu7_A            3 TAQAVLYTQHGEPKDVLFTQSFEIDDDNLAPN-----EVIVKTLGSPVNPSDINQIQGVYPSKPAKTTGFGTTEPAAPCG   77 (364)
T ss_dssp             EEEEEEESSCSCHHHHCEEEEEEECTTSCCTT-----EEEEEEEEEEECHHHHHHHHTCSSCCCCCBSTTCCSSCBEECC
T ss_pred             eEEEEEeccCCCchheeEEeeccCCCCCCCCC-----eEEEEEEeccCCHHHHHHhcCCCCCCCCCCccccccCcccccC
Confidence            488999988875    2    4556665  88     999999999999999999999776444567         8999


Q ss_pred             CceeEEEEEEccCCCCCCCCCCCCCCCCCCCEEEEecCCCCCcccceEeeeCCceEECCC-----------CCCHHHHhh
Q psy1959          73 FEFSGTVIEVADTKSSSTEEDDEEDVLQVGDKVLALNKELLHGFSDQCVVHTNDVFKIPE-----------KMTFEHAAS  141 (296)
Q Consensus        73 ~e~~G~V~~v~~~~~~~~~~g~~v~~~~~Gd~V~~~~~~~~g~~~~~~~v~~~~~~~iP~-----------~~~~~~aa~  141 (296)
                      ||++|+|+++          |++|++|++||||++... ..|+|+||++++++.++++|+           ++++++||+
T Consensus        78 ~E~~G~V~~v----------G~~v~~~~vGdrV~~~~~-~~G~~aey~~v~~~~~~~~P~~~~~~~~~~~~~~~~~~aa~  146 (364)
T 1gu7_A           78 NEGLFEVIKV----------GSNVSSLEAGDWVIPSHV-NFGTWRTHALGNDDDFIKLPNPAQSKANGKPNGLTINQGAT  146 (364)
T ss_dssp             SCCEEEEEEE----------CTTCCSCCTTCEEEESSS-CCCCSBSEEEEEGGGEEEECCHHHHHHTTCSCCCCHHHHHT
T ss_pred             ceeEEEEEEe----------CCCCCcCCCCCEEEecCC-CCCcchheEecCHHHeEEcCCccccccccccCCCCHHHHhh
Confidence            9999999999          999999999999998742 249999999999999999998           899999999


Q ss_pred             hccHHHHHHHHHHHHcCCCCC-cEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcch----HHHHHhcCCcEEEEcCC
Q psy1959         142 LADSYSTAQIVFSRHAKLKEK-QTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDK----TDLIRQKGAWAALTFTN  216 (296)
Q Consensus       142 l~~~~~ta~~~l~~~~~~~~g-~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~----~~~~~~~g~~~~~~~~~  216 (296)
                      ++.+++|||+++.+.+++++| ++|+|+|++|++|++++|+| +..|++|++++++.++    .++++++|++.++++++
T Consensus       147 l~~~~~ta~~~l~~~~~~~~g~~~VlV~Ga~G~vG~~aiqla-k~~Ga~vi~~~~~~~~~~~~~~~~~~lGa~~vi~~~~  225 (364)
T 1gu7_A          147 ISVNPLTAYLMLTHYVKLTPGKDWFIQNGGTSAVGKYASQIG-KLLNFNSISVIRDRPNLDEVVASLKELGATQVITEDQ  225 (364)
T ss_dssp             CTTHHHHHHHHHHSSSCCCTTTCEEEESCTTSHHHHHHHHHH-HHHTCEEEEEECCCTTHHHHHHHHHHHTCSEEEEHHH
T ss_pred             ccccHHHHHHHHHHhhccCCCCcEEEECCCCcHHHHHHHHHH-HHCCCEEEEEecCccccHHHHHHHHhcCCeEEEecCc
Confidence            999999999999776799999 99999999999999999999 6789999999876665    67888999999998853


Q ss_pred             --chhHHHHHHHHh--CCCcccEEEECCCCccHHHHHHHhhccCceEEee-----------cccceeeeeEEecccc
Q psy1959         217 --EKSLVNKVLEVS--GGKYANVVFEAVGGEDKTDLIRQKGAWAALTFTN-----------EKSLVNKVLEVSGGKY  278 (296)
Q Consensus       217 --~~~~~~~i~~~~--~~~g~d~vld~~g~~~~~~~~~~lg~~~g~~~~~-----------~~~~~~k~~~i~g~~~  278 (296)
                        ..++.+.+++.+  ++.++|++|||+|++....+++++ +++|++..-           ...++.|++++.|++.
T Consensus       226 ~~~~~~~~~i~~~t~~~~~g~Dvvid~~G~~~~~~~~~~l-~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~g~~~  301 (364)
T 1gu7_A          226 NNSREFGPTIKEWIKQSGGEAKLALNCVGGKSSTGIARKL-NNNGLMLTYGGMSFQPVTIPTSLYIFKNFTSAGFWV  301 (364)
T ss_dssp             HHCGGGHHHHHHHHHHHTCCEEEEEESSCHHHHHHHHHTS-CTTCEEEECCCCSSCCEEECHHHHHHSCCEEEECCH
T ss_pred             cchHHHHHHHHHHhhccCCCceEEEECCCchhHHHHHHHh-ccCCEEEEecCCCCCCcccCHHHHhhcCcEEEEEch
Confidence              146777888887  566999999999997666889999 777776332           2235568888888763

>2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.2e-39  Score=295.57  Aligned_cols=248  Identities=22%  Similarity=0.248  Sum_probs=213.9

Q ss_pred             CCcceEEecCCCC-C----CCCCCCCCCCCCCCcEEEEeeeeecChhhHHHHcCCCCCCCCCCCcCCCceeEEEEEEccC
Q psy1959          11 NSSDLLLYNGSGD-A----KPTLPLVPGFEFSGTIIEKKMMTRINSSDLLLYNGSGDAKPTLPLVPGFEFSGTVIEVADT   85 (296)
Q Consensus        11 ~~~~~~~~~~~~~-~----~~~p~~~~~~~~~~evlvkv~~~~i~~~D~~~~~g~~~~~~~~p~~~G~e~~G~V~~v~~~   85 (296)
                      .+|+++++++++. .    .|.|.|.++     ||+|||.+++||++|++.+.|.++....+|.++|||++|+|+++   
T Consensus         4 ~~mka~~~~~~g~~l~~~~~~~P~~~~~-----eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~v~G~E~~G~V~~v---   75 (347)
T 2hcy_A            4 ETQKGVIFYESHGKLEYKDIPVPKPKAN-----ELLINVKYSGVCHTDLHAWHGDWPLPVKLPLVGGHEGAGVVVGM---   75 (347)
T ss_dssp             SEEEEEEESSTTCCCEEEEEECCCCCTT-----EEEEEEEEEEECHHHHHHHHTCSSSCCCSSEECCCEEEEEEEEE---
T ss_pred             cccEEEEEeCCCCCCEEEEeeCCCCCCC-----EEEEEEEEEEechhHHHHhcCCCCCCCCCCcccCccceEEEEEE---
Confidence            3699999998873 3    677888889     99999999999999999999977644567999999999999999   


Q ss_pred             CCCCCCCCCCCCCCCCCCEEEEec--------------------------CCCCCcccceEeeeCCceEECCCCCCHHHH
Q psy1959          86 KSSSTEEDDEEDVLQVGDKVLALN--------------------------KELLHGFSDQCVVHTNDVFKIPEKMTFEHA  139 (296)
Q Consensus        86 ~~~~~~~g~~v~~~~~Gd~V~~~~--------------------------~~~~g~~~~~~~v~~~~~~~iP~~~~~~~a  139 (296)
                             |++|++|++||||+...                          ....|+|+||+++|++.++++|++++++++
T Consensus        76 -------G~~v~~~~~GdrV~~~~~~~~cg~C~~C~~g~~~~C~~~~~~g~~~~G~~aey~~v~~~~~~~iP~~~~~~~a  148 (347)
T 2hcy_A           76 -------GENVKGWKIGDYAGIKWLNGSCMACEYCELGNESNCPHADLSGYTHDGSFQQYATADAVQAAHIPQGTDLAQV  148 (347)
T ss_dssp             -------CTTCCSCCTTCEEEECSEEECCSSSTTTTTTCGGGCTTCEEBTTTBCCSSBSEEEEETTTSEEECTTCCHHHH
T ss_pred             -------CCCCCCCcCCCEEEEecCCCCCCCChhhhCCCcccCccccccccCCCCcceeEEEeccccEEECCCCCCHHHH
Confidence                   99999999999998631                          012599999999999999999999999999


Q ss_pred             hhhccHHHHHHHHHHHHcCCCCCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCcEEEEcCCchh
Q psy1959         140 ASLADSYSTAQIVFSRHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKS  219 (296)
Q Consensus       140 a~l~~~~~ta~~~l~~~~~~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~  219 (296)
                      |+++.++.|||+++. ..++++|++|+|+|++|++|++++|++ +..|++|+++++++++.+.++++|++.++++.+..+
T Consensus       149 a~l~~~~~ta~~~l~-~~~~~~g~~vlV~Ga~ggiG~~~~~~a-~~~Ga~V~~~~~~~~~~~~~~~~g~~~~~d~~~~~~  226 (347)
T 2hcy_A          149 APILCAGITVYKALK-SANLMAGHWVAISGAAGGLGSLAVQYA-KAMGYRVLGIDGGEGKEELFRSIGGEVFIDFTKEKD  226 (347)
T ss_dssp             GGGGTHHHHHHHHHH-TTTCCTTCEEEEETTTSHHHHHHHHHH-HHTTCEEEEEECSTTHHHHHHHTTCCEEEETTTCSC
T ss_pred             HHHhhhHHHHHHHHH-hcCCCCCCEEEEECCCchHHHHHHHHH-HHCCCcEEEEcCCHHHHHHHHHcCCceEEecCccHh
Confidence            999999999999995 458999999999999999999999999 668999999999999999999999998888763367


Q ss_pred             HHHHHHHHhCCCcccEEEECCCC-ccHHHHHHHhhccCceEEe-----------ecccceeeeeEEeccc
Q psy1959         220 LVNKVLEVSGGKYANVVFEAVGG-EDKTDLIRQKGAWAALTFT-----------NEKSLVNKVLEVSGGK  277 (296)
Q Consensus       220 ~~~~i~~~~~~~g~d~vld~~g~-~~~~~~~~~lg~~~g~~~~-----------~~~~~~~k~~~i~g~~  277 (296)
                      +.+.+.+.+.+ ++|++||++|. +.+..+++++ +++|++..           +...++.|++++.|++
T Consensus       227 ~~~~~~~~~~~-~~D~vi~~~g~~~~~~~~~~~l-~~~G~iv~~g~~~~~~~~~~~~~~~~~~~~i~g~~  294 (347)
T 2hcy_A          227 IVGAVLKATDG-GAHGVINVSVSEAAIEASTRYV-RANGTTVLVGMPAGAKCCSDVFNQVVKSISIVGSY  294 (347)
T ss_dssp             HHHHHHHHHTS-CEEEEEECSSCHHHHHHHTTSE-EEEEEEEECCCCTTCEEEEEHHHHHHTTCEEEECC
T ss_pred             HHHHHHHHhCC-CCCEEEECCCcHHHHHHHHHHH-hcCCEEEEEeCCCCCCCCCCHHHHhhCCcEEEEcc
Confidence            88888888876 89999999998 7889999999 76666532           2224455788888765

>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A

Probab=100.00  E-value=3e-39  Score=296.78  Aligned_cols=248  Identities=21%  Similarity=0.209  Sum_probs=210.9

Q ss_pred             ccCCcceEEecCCCCC----CCCCCCCCCCCCCCcEEEEeeeeecChhhHHHHcCC-CC-CCCCCCCcCCCceeEEEEEE
Q psy1959           9 ALNSSDLLLYNGSGDA----KPTLPLVPGFEFSGTIIEKKMMTRINSSDLLLYNGS-GD-AKPTLPLVPGFEFSGTVIEV   82 (296)
Q Consensus         9 ~~~~~~~~~~~~~~~~----~~~p~~~~~~~~~~evlvkv~~~~i~~~D~~~~~g~-~~-~~~~~p~~~G~e~~G~V~~v   82 (296)
                      ++-+||++++++++..    .|.|+|.++     ||+|||.+++||++|++.+.|. .. ....+|.++|||++|+|+++
T Consensus         4 ~~~~mka~~~~~~~~l~~~~~~~P~~~~~-----eVlVkv~a~gi~~~D~~~~~g~~~~~~~~~~p~v~G~E~~G~V~~v   78 (356)
T 1pl8_A            4 AKPNNLSLVVHGPGDLRLENYPIPEPGPN-----EVLLRMHSVGICGSDVHYWEYGRIGNFIVKKPMVLGHEASGTVEKV   78 (356)
T ss_dssp             CCCCCEEEEEEETTEEEEEECCCCCCCTT-----EEEEEEEEEEECHHHHHHHHHSEETTEECSSCEECCCEEEEEEEEE
T ss_pred             cccCceEEEEecCCcEEEEEccCCCCCCC-----eEEEEEEEeeeCHHHHHHHcCCCCCCccCCCCcccccceEEEEEEE
Confidence            3457999999987755    677888889     9999999999999999988742 21 11356899999999999999


Q ss_pred             ccCCCCCCCCCCCCCCCCCCCEEEEecC--------------------------CCCCcccceEeeeCCceEECCCCCCH
Q psy1959          83 ADTKSSSTEEDDEEDVLQVGDKVLALNK--------------------------ELLHGFSDQCVVHTNDVFKIPEKMTF  136 (296)
Q Consensus        83 ~~~~~~~~~~g~~v~~~~~Gd~V~~~~~--------------------------~~~g~~~~~~~v~~~~~~~iP~~~~~  136 (296)
                                |++|++|++||||++...                          ...|+|+||+++|++.++++|+++++
T Consensus        79 ----------G~~V~~~~vGdrV~~~~~~~cg~C~~C~~g~~~~C~~~~~~g~~~~~G~~aey~~v~~~~~~~iP~~l~~  148 (356)
T 1pl8_A           79 ----------GSSVKHLKPGDRVAIEPGAPRENDEFCKMGRYNLSPSIFFCATPPDDGNLCRFYKHNAAFCYKLPDNVTF  148 (356)
T ss_dssp             ----------CTTCCSCCTTCEEEECSEECSSCCHHHHTTCGGGCTTCEETTBTTBCCSCBSEEEEEGGGEEECCTTSCH
T ss_pred             ----------CCCCCCCCCCCEEEEeccCCCCCChHHHCcCcccCCCccccCcCCCCCccccEEEeehHHEEECcCCCCH
Confidence                      999999999999997521                          12599999999999999999999999


Q ss_pred             HHHhhhccHHHHHHHHHHHHcCCCCCcEEEEEcCCCcHHHHHHHHHHHhCCC-EEEEEeCCcchHHHHHhcCCcEEEEcC
Q psy1959         137 EHAASLADSYSTAQIVFSRHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKA-KVIGVCNSEDKTDLIRQKGAWAALTFT  215 (296)
Q Consensus       137 ~~aa~l~~~~~ta~~~l~~~~~~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~-~Vi~~~~~~~~~~~~~~~g~~~~~~~~  215 (296)
                      ++||.+ .++.+||+++ +.+++++|++|+|+|+ |++|++++|+| +..|+ +|++++++++++++++++|++.+++++
T Consensus       149 ~~aa~~-~~~~ta~~al-~~~~~~~g~~VlV~Ga-G~vG~~aiqla-k~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~  224 (356)
T 1pl8_A          149 EEGALI-EPLSVGIHAC-RRGGVTLGHKVLVCGA-GPIGMVTLLVA-KAMGAAQVVVTDLSATRLSKAKEIGADLVLQIS  224 (356)
T ss_dssp             HHHHHH-HHHHHHHHHH-HHHTCCTTCEEEEECC-SHHHHHHHHHH-HHTTCSEEEEEESCHHHHHHHHHTTCSEEEECS
T ss_pred             HHHHhh-chHHHHHHHH-HhcCCCCCCEEEEECC-CHHHHHHHHHH-HHcCCCEEEEECCCHHHHHHHHHhCCCEEEcCc
Confidence            999854 7899999999 7889999999999996 99999999999 67899 999999999999999999999999887


Q ss_pred             C--chhHHHHHHHHhCCCcccEEEECCCC-ccHHHHHHHhhccCceEEee----------cccceeeeeEEeccc
Q psy1959         216 N--EKSLVNKVLEVSGGKYANVVFEAVGG-EDKTDLIRQKGAWAALTFTN----------EKSLVNKVLEVSGGK  277 (296)
Q Consensus       216 ~--~~~~~~~i~~~~~~~g~d~vld~~g~-~~~~~~~~~lg~~~g~~~~~----------~~~~~~k~~~i~g~~  277 (296)
                      .  ..++.+.+++.++ .++|++||++|+ ..+..+++++ +++|++..-          ...++.|++++.|++
T Consensus       225 ~~~~~~~~~~i~~~~~-~g~D~vid~~g~~~~~~~~~~~l-~~~G~iv~~G~~~~~~~~~~~~~~~~~~~i~g~~  297 (356)
T 1pl8_A          225 KESPQEIARKVEGQLG-CKPEVTIECTGAEASIQAGIYAT-RSGGTLVLVGLGSEMTTVPLLHAAIREVDIKGVF  297 (356)
T ss_dssp             SCCHHHHHHHHHHHHT-SCCSEEEECSCCHHHHHHHHHHS-CTTCEEEECSCCCSCCCCCHHHHHHTTCEEEECC
T ss_pred             ccccchHHHHHHHHhC-CCCCEEEECCCChHHHHHHHHHh-cCCCEEEEEecCCCCCccCHHHHHhcceEEEEec
Confidence            1  2577788888886 799999999998 4789999999 888777432          224567888888875

>3nx4_A Putative oxidoreductase; csgid, structural genomics, center for struc genomics of infectious diseases, PSI, protein structure INI; HET: MSE NAP; 1.90A {Salmonella enterica subsp} PDB: 1o89_A 1o8c_A*

Probab=100.00  E-value=6e-40  Score=297.46  Aligned_cols=241  Identities=18%  Similarity=0.284  Sum_probs=203.6

Q ss_pred             cceEEecCCCCC-------CCCCCCCCCCCCCCcEEEEeeeeecChhhHHHHcCCCCCCCCCCCcCCCceeEEEEEEccC
Q psy1959          13 SDLLLYNGSGDA-------KPTLPLVPGFEFSGTIIEKKMMTRINSSDLLLYNGSGDAKPTLPLVPGFEFSGTVIEVADT   85 (296)
Q Consensus        13 ~~~~~~~~~~~~-------~~~p~~~~~~~~~~evlvkv~~~~i~~~D~~~~~g~~~~~~~~p~~~G~e~~G~V~~v~~~   85 (296)
                      ||+++++++++.       .|.|+|.++     ||+|||.+++||++|++.+.|.++....+|.++|||++|+|+++   
T Consensus         1 MkA~~~~~~g~~~~l~~~~~~~p~~~~~-----eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~v~G~E~~G~V~~~---   72 (324)
T 3nx4_A            1 MQALILEQQDGKTLASVQHLEESQLPAG-----DVTVDVHWSSLNYKDALAITGKGKIIRHFPMIPGIDFAGTVHAS---   72 (324)
T ss_dssp             CEEEEEEESSSSEEEEEEECCGGGSCCC-----SEEEEEEEEEECHHHHHHHHTCTTCCCSSSBCCCSEEEEEEEEE---
T ss_pred             CceEEEecCCCCceeeEeecCCCCCCCC-----EEEEEEEEEeCCHHHHhhhcCCCCCCCCCCccccceeEEEEEEe---
Confidence            566677666642       678888899     99999999999999999999988766788999999999999999   


Q ss_pred             CCCCCCCCCCCCCCCCCCEEEEecC----CCCCcccceEeeeCCceEECCCCCCHHHHhhhccHHHHHHHHHH--HHcCC
Q psy1959          86 KSSSTEEDDEEDVLQVGDKVLALNK----ELLHGFSDQCVVHTNDVFKIPEKMTFEHAASLADSYSTAQIVFS--RHAKL  159 (296)
Q Consensus        86 ~~~~~~~g~~v~~~~~Gd~V~~~~~----~~~g~~~~~~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~l~--~~~~~  159 (296)
                             |  +++|++||||++...    ...|+|+||+++|+++++++|+++++++||+++..+.|||.+++  ...++
T Consensus        73 -------G--v~~~~vGdrV~~~~~~~g~~~~G~~aey~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~al~~~~~~~~  143 (324)
T 3nx4_A           73 -------E--DPRFHAGQEVLLTGWGVGENHWGGLAERARVKGDWLVALPAGLSSRNAMIIGTAGFTAMLCVMALEDAGI  143 (324)
T ss_dssp             -------S--STTCCTTCEEEEECTTBTTTBCCSSBSEEEECGGGCEECCTTCCHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             -------C--CCCCCCCCEEEEcccccCCCCCCceeeEEecCHHHcEECCCCCCHHHHHHhhhHHHHHHHHHHHhhhccc
Confidence                   7  578999999998631    23699999999999999999999999999999999999999886  34556


Q ss_pred             CCCc-EEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCcEEEEcCCchhHHHHHHHHhCCCcccEEEE
Q psy1959         160 KEKQ-TVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNKVLEVSGGKYANVVFE  238 (296)
Q Consensus       160 ~~g~-~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~g~d~vld  238 (296)
                      ++++ +|+|+|++|++|++++|+| +..|++|++++++++|.++++++|++.++++++ .+.   +++++ +.++|++||
T Consensus       144 ~~~~g~VlV~Ga~G~vG~~aiqla-~~~Ga~Vi~~~~~~~~~~~~~~lGa~~vi~~~~-~~~---~~~~~-~~~~d~v~d  217 (324)
T 3nx4_A          144 RPQDGEVVVTGASGGVGSTAVALL-HKLGYQVAAVSGRESTHGYLKSLGANRILSRDE-FAE---SRPLE-KQLWAGAID  217 (324)
T ss_dssp             CGGGCCEEESSTTSHHHHHHHHHH-HHTTCCEEEEESCGGGHHHHHHHTCSEEEEGGG-SSC---CCSSC-CCCEEEEEE
T ss_pred             CCCCCeEEEECCCcHHHHHHHHHH-HHcCCEEEEEeCCHHHHHHHHhcCCCEEEecCC-HHH---HHhhc-CCCccEEEE
Confidence            6633 4999999999999999999 678999999999999999999999999998865 222   33444 348999999


Q ss_pred             CCCCccHHHHHHHhhccCceEEe-----------ecccceeeeeEEeccc
Q psy1959         239 AVGGEDKTDLIRQKGAWAALTFT-----------NEKSLVNKVLEVSGGK  277 (296)
Q Consensus       239 ~~g~~~~~~~~~~lg~~~g~~~~-----------~~~~~~~k~~~i~g~~  277 (296)
                      |+|++.++.+++++ +++|++..           +...++.|++++.|++
T Consensus       218 ~~g~~~~~~~~~~l-~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~~~g~~  266 (324)
T 3nx4_A          218 TVGDKVLAKVLAQM-NYGGCVAACGLAGGFALPTTVMPFILRNVRLQGVD  266 (324)
T ss_dssp             SSCHHHHHHHHHTE-EEEEEEEECCCTTCSEEEEESHHHHHHCCEEEECC
T ss_pred             CCCcHHHHHHHHHH-hcCCEEEEEecCCCCCCCCCHHHHhhcCeEEEEEe
Confidence            99999999999999 77776632           2335667888998875

>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1

Probab=100.00  E-value=3.5e-39  Score=295.90  Aligned_cols=246  Identities=23%  Similarity=0.237  Sum_probs=208.7

Q ss_pred             CcceEEecCCCCC----CCCCCCCCCCCCCCcEEEEeeeeecChhhHHHHc-CCCC-CCCCCCCcCCCceeEEEEEEccC
Q psy1959          12 SSDLLLYNGSGDA----KPTLPLVPGFEFSGTIIEKKMMTRINSSDLLLYN-GSGD-AKPTLPLVPGFEFSGTVIEVADT   85 (296)
Q Consensus        12 ~~~~~~~~~~~~~----~~~p~~~~~~~~~~evlvkv~~~~i~~~D~~~~~-g~~~-~~~~~p~~~G~e~~G~V~~v~~~   85 (296)
                      +||++++++++..    .|.|+|.++     ||||||.+++||++|++.+. +.+. ....+|.++|||++|+|+++   
T Consensus         4 ~mka~~~~~~~~l~~~~~~~P~~~~~-----eVlVkv~a~gi~~~D~~~~~~g~~~~~~~~~p~v~G~E~~G~V~~v---   75 (352)
T 1e3j_A            4 DNLSAVLYKQNDLRLEQRPIPEPKED-----EVLLQMAYVGICGSDVHYYEHGRIADFIVKDPMVIGHEASGTVVKV---   75 (352)
T ss_dssp             CCEEEEEEETTEEEEEECCCCCCCTT-----EEEEEEEEEEECHHHHHHHHHSBSSSCBCCSCEECCCEEEEEEEEE---
T ss_pred             cCEEEEEEcCCcEEEEEecCCCCCCC-----eEEEEEEEEEEChhhHHHHcCCCCccccCCCCccccccceEEEEEe---
Confidence            5899999987765    677888889     99999999999999999887 4332 22357999999999999999   


Q ss_pred             CCCCCCCCCCCCCCCCCCEEEEecC--------------------------CCCCcccceEeeeCCceEECCCCCCHHHH
Q psy1959          86 KSSSTEEDDEEDVLQVGDKVLALNK--------------------------ELLHGFSDQCVVHTNDVFKIPEKMTFEHA  139 (296)
Q Consensus        86 ~~~~~~~g~~v~~~~~Gd~V~~~~~--------------------------~~~g~~~~~~~v~~~~~~~iP~~~~~~~a  139 (296)
                             |++|++|++||||++...                          ...|+|+||+++|++.++++|+++++++|
T Consensus        76 -------G~~v~~~~vGdrV~~~~~~~cg~C~~C~~g~~~~C~~~~~~g~~~~~G~~aey~~v~~~~~~~iP~~~~~~~a  148 (352)
T 1e3j_A           76 -------GKNVKHLKKGDRVAVEPGVPCRRCQFCKEGKYNLCPDLTFCATPPDDGNLARYYVHAADFCHKLPDNVSLEEG  148 (352)
T ss_dssp             -------CTTCCSCCTTCEEEECCEECCSSSHHHHTTCGGGCTTCEETTBTTBCCSCBSEEEEEGGGEEECCTTSCHHHH
T ss_pred             -------CCCCCCCCCCCEEEEcCcCCCCCChhhhCcCcccCCCCcccCcCCCCccceeEEEeChHHeEECcCCCCHHHH
Confidence                   999999999999997521                          12599999999999999999999999999


Q ss_pred             hhhccHHHHHHHHHHHHcCCCCCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCcEEEEcCCchh
Q psy1959         140 ASLADSYSTAQIVFSRHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKS  219 (296)
Q Consensus       140 a~l~~~~~ta~~~l~~~~~~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~  219 (296)
                      |.+ .++.+||+++ +.+++++|++|+|+|+ |++|++++|+| +..|++|++++++++++++++++|++.++++++..+
T Consensus       149 a~~-~~~~ta~~al-~~~~~~~g~~VlV~Ga-G~vG~~a~qla-~~~Ga~Vi~~~~~~~~~~~~~~lGa~~~~~~~~~~~  224 (352)
T 1e3j_A          149 ALL-EPLSVGVHAC-RRAGVQLGTTVLVIGA-GPIGLVSVLAA-KAYGAFVVCTARSPRRLEVAKNCGADVTLVVDPAKE  224 (352)
T ss_dssp             HTH-HHHHHHHHHH-HHHTCCTTCEEEEECC-SHHHHHHHHHH-HHTTCEEEEEESCHHHHHHHHHTTCSEEEECCTTTS
T ss_pred             Hhh-chHHHHHHHH-HhcCCCCCCEEEEECC-CHHHHHHHHHH-HHcCCEEEEEcCCHHHHHHHHHhCCCEEEcCccccc
Confidence            854 7899999999 7889999999999997 99999999999 678999999999999999999999999888863145


Q ss_pred             HHHHHHHHhC---CCcccEEEECCCCc-cHHHHHHHhhccCceEEee----------cccceeeeeEEeccc
Q psy1959         220 LVNKVLEVSG---GKYANVVFEAVGGE-DKTDLIRQKGAWAALTFTN----------EKSLVNKVLEVSGGK  277 (296)
Q Consensus       220 ~~~~i~~~~~---~~g~d~vld~~g~~-~~~~~~~~lg~~~g~~~~~----------~~~~~~k~~~i~g~~  277 (296)
                      +.+.+.+.++   +.++|++||++|+. .+..+++++ +++|++..-          ...++.|++++.|++
T Consensus       225 ~~~~i~~~~~~~~g~g~D~vid~~g~~~~~~~~~~~l-~~~G~iv~~G~~~~~~~~~~~~~~~~~~~i~g~~  295 (352)
T 1e3j_A          225 EESSIIERIRSAIGDLPNVTIDCSGNEKCITIGINIT-RTGGTLMLVGMGSQMVTVPLVNACAREIDIKSVF  295 (352)
T ss_dssp             CHHHHHHHHHHHSSSCCSEEEECSCCHHHHHHHHHHS-CTTCEEEECSCCSSCCCCCHHHHHTTTCEEEECC
T ss_pred             HHHHHHHHhccccCCCCCEEEECCCCHHHHHHHHHHH-hcCCEEEEEecCCCCccccHHHHHhcCcEEEEec
Confidence            6667777765   56899999999984 789999999 778776432          224567788888875

>3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii}

Probab=100.00  E-value=1.7e-39  Score=294.34  Aligned_cols=242  Identities=24%  Similarity=0.348  Sum_probs=205.2

Q ss_pred             ccCCcceEEecCCCCC-------CCCCCCCCCCCCCCcEEEEeeeeecChhhHHHHcCCC----CCCCCCCCcCCCceeE
Q psy1959           9 ALNSSDLLLYNGSGDA-------KPTLPLVPGFEFSGTIIEKKMMTRINSSDLLLYNGSG----DAKPTLPLVPGFEFSG   77 (296)
Q Consensus         9 ~~~~~~~~~~~~~~~~-------~~~p~~~~~~~~~~evlvkv~~~~i~~~D~~~~~g~~----~~~~~~p~~~G~e~~G   77 (296)
                      +|-+||++++++++..       .|.|+|.++     ||||||.+++||++|++.+.|..    .....+|.++|||++|
T Consensus         3 ~m~~Mka~~~~~~g~~~~l~~~~~~~P~~~~~-----eVlVkv~a~gi~~~D~~~~~g~~~~~~~~~~~~p~v~G~E~~G   77 (321)
T 3tqh_A            3 AMKEMKAIQFDQFGPPKVLKLVDTPTPEYRKN-----QMLIKVHAASLNPIDYKTRNGSGFVAKKLKNNLPSGLGYDFSG   77 (321)
T ss_dssp             --CEEEEEEESSSCSGGGEEEEEEECCCCCTT-----CEEEEEEEEECCHHHHHHHTTCSHHHHHHTTSCSBCCCCEEEE
T ss_pred             ccccceEEEEccCCCcceeEEEecCCCCCCCC-----EEEEEEEEEEcCHHHHHHhcCCccccccccCCCCCcccceeEE
Confidence            3457899999987763       678888899     99999999999999999998832    1135679999999999


Q ss_pred             EEEEEccCCCCCCCCCCCCCCCCCCCEEEEecC--CCCCcccceEeeeCCceEECCCCCCHHHHhhhccHHHHHHHHHHH
Q psy1959          78 TVIEVADTKSSSTEEDDEEDVLQVGDKVLALNK--ELLHGFSDQCVVHTNDVFKIPEKMTFEHAASLADSYSTAQIVFSR  155 (296)
Q Consensus        78 ~V~~v~~~~~~~~~~g~~v~~~~~Gd~V~~~~~--~~~g~~~~~~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~l~~  155 (296)
                      +|+++          |+++++|++||||+++..  ...|+|+||++++++.++++|++++++++|+++.++.|||+++ +
T Consensus        78 ~V~~v----------G~~v~~~~~GdrV~~~~~~~~~~G~~aey~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~al-~  146 (321)
T 3tqh_A           78 EVIEL----------GSDVNNVNIGDKVMGIAGFPDHPCCYAEYVCASPDTIIQKLEKLSFLQAASLPTAGLTALQAL-N  146 (321)
T ss_dssp             EEEEE----------CTTCCSCCTTCEEEEECSTTTCCCCSBSEEEECGGGEEECCTTSCHHHHHHSHHHHHHHHHHH-H
T ss_pred             EEEEe----------CCCCCCCCCCCEEEEccCCCCCCCcceEEEEecHHHhccCCCCCCHHHHhhhhhHHHHHHHHH-H
Confidence            99999          999999999999998863  2369999999999999999999999999999999999999999 8


Q ss_pred             HcCCCCCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCcEEEEcCCchh-HHHHHHHHhCCCccc
Q psy1959         156 HAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKS-LVNKVLEVSGGKYAN  234 (296)
Q Consensus       156 ~~~~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~i~~~~~~~g~d  234 (296)
                      .+++++|++|+|+|++|++|++++|+| +..|++|++++ ++++.++++++|++.++++++ .+ +.+.+      +++|
T Consensus       147 ~~~~~~g~~vlV~Ga~G~vG~~a~q~a-~~~Ga~vi~~~-~~~~~~~~~~lGa~~~i~~~~-~~~~~~~~------~g~D  217 (321)
T 3tqh_A          147 QAEVKQGDVVLIHAGAGGVGHLAIQLA-KQKGTTVITTA-SKRNHAFLKALGAEQCINYHE-EDFLLAIS------TPVD  217 (321)
T ss_dssp             HTTCCTTCEEEESSTTSHHHHHHHHHH-HHTTCEEEEEE-CHHHHHHHHHHTCSEEEETTT-SCHHHHCC------SCEE
T ss_pred             hcCCCCCCEEEEEcCCcHHHHHHHHHH-HHcCCEEEEEe-ccchHHHHHHcCCCEEEeCCC-cchhhhhc------cCCC
Confidence            899999999999998899999999999 67899999887 566789999999999999877 44 44332      5899


Q ss_pred             EEEECCCCccHHHHHHHhhccCceEEeecc--------cceeeeeEEecc
Q psy1959         235 VVFEAVGGEDKTDLIRQKGAWAALTFTNEK--------SLVNKVLEVSGG  276 (296)
Q Consensus       235 ~vld~~g~~~~~~~~~~lg~~~g~~~~~~~--------~~~~k~~~i~g~  276 (296)
                      ++|||+|++....+++++ +++|++..-..        .+..+++++.+.
T Consensus       218 ~v~d~~g~~~~~~~~~~l-~~~G~iv~~g~~~~~~~~~~~~~~~~~~~~~  266 (321)
T 3tqh_A          218 AVIDLVGGDVGIQSIDCL-KETGCIVSVPTITAGRVIEVAKQKHRRAFGL  266 (321)
T ss_dssp             EEEESSCHHHHHHHGGGE-EEEEEEEECCSTTHHHHHHHHHHTTCEEECC
T ss_pred             EEEECCCcHHHHHHHHhc-cCCCEEEEeCCCCchhhhhhhhhcceEEEEE
Confidence            999999998779999999 88887754321        234566777764

>3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa}

Probab=100.00  E-value=1.8e-39  Score=298.90  Aligned_cols=245  Identities=20%  Similarity=0.179  Sum_probs=210.4

Q ss_pred             CCcceEEecCCCCC----CCCC--------CCCCCCCCCCcEEEEeeeeecChhhHHHHcCC-C-CCCCCCCCcCCCcee
Q psy1959          11 NSSDLLLYNGSGDA----KPTL--------PLVPGFEFSGTIIEKKMMTRINSSDLLLYNGS-G-DAKPTLPLVPGFEFS   76 (296)
Q Consensus        11 ~~~~~~~~~~~~~~----~~~p--------~~~~~~~~~~evlvkv~~~~i~~~D~~~~~g~-~-~~~~~~p~~~G~e~~   76 (296)
                      .+|+++++.++++.    .|.|        +|.++     ||||||.+++||++|++.+.+. . .....+|.++|||++
T Consensus         7 ~~mka~~~~~~~~l~~~~~~~P~~~~~~~~~~~~~-----eVlVkv~a~gi~~~D~~~~~~~~~~~~~~~~p~v~G~E~~   81 (363)
T 3m6i_A            7 KTNIGVFTNPQHDLWISEASPSLESVQKGEELKEG-----EVTVAVRSTGICGSDVHFWKHGCIGPMIVECDHVLGHESA   81 (363)
T ss_dssp             SCCEEEEECTTCCEEEEECSSCHHHHHHTCSCCTT-----EEEEEEEEEECCHHHHHHHHHSBSSSCBCCSCEECCCEEE
T ss_pred             ccceeEEEeCCCcEEEEEecCCccccccCCCcCCC-----eEEEEEeEEeecHhhHHHHcCCCCCCccCCCCcccCcceE
Confidence            47999999988876    7888        88889     9999999999999999988732 2 223467999999999


Q ss_pred             EEEEEEccCCCCCCCCCCCCCCCCCCCEEEEecC--------------------------CCCCcccceEeeeCCceEEC
Q psy1959          77 GTVIEVADTKSSSTEEDDEEDVLQVGDKVLALNK--------------------------ELLHGFSDQCVVHTNDVFKI  130 (296)
Q Consensus        77 G~V~~v~~~~~~~~~~g~~v~~~~~Gd~V~~~~~--------------------------~~~g~~~~~~~v~~~~~~~i  130 (296)
                      |+|+++          |++|++|++||||++...                          ...|+|+||+++|++.++++
T Consensus        82 G~V~~v----------G~~v~~~~vGdrV~~~~~~~cg~C~~c~~g~~~~c~~~~~~g~~~~~G~~aey~~v~~~~~~~i  151 (363)
T 3m6i_A           82 GEVIAV----------HPSVKSIKVGDRVAIEPQVICNACEPCLTGRYNGCERVDFLSTPPVPGLLRRYVNHPAVWCHKI  151 (363)
T ss_dssp             EEEEEE----------CTTCCSCCTTCEEEECCEECCSCSHHHHTTCGGGCTTCEETTSTTSCCSCBSEEEEEGGGEEEC
T ss_pred             EEEEEE----------CCCCCCCCCCCEEEEecccCCCCCHHHHCcCcccCCCccccCCCCCCccceeEEEEehhhEEEC
Confidence            999999          999999999999997521                          13699999999999999999


Q ss_pred             CCCCCHHHHhhhccHHHHHHHHHHHHcCCCCCcEEEEEcCCCcHHHHHHHHHHHhCCCE-EEEEeCCcchHHHHHhcCCc
Q psy1959         131 PEKMTFEHAASLADSYSTAQIVFSRHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKAK-VIGVCNSEDKTDLIRQKGAW  209 (296)
Q Consensus       131 P~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~~-Vi~~~~~~~~~~~~~~~g~~  209 (296)
                      |+ +++++||.+ .++.|||+++ +.+++++|++|||+|+ |++|++++|+| +..|++ |++++++++|+++++++ ++
T Consensus       152 P~-~s~~~aa~~-~~~~ta~~~l-~~~~~~~g~~VlV~Ga-G~vG~~aiqla-k~~Ga~~Vi~~~~~~~~~~~a~~l-~~  225 (363)
T 3m6i_A          152 GN-MSYENGAML-EPLSVALAGL-QRAGVRLGDPVLICGA-GPIGLITMLCA-KAAGACPLVITDIDEGRLKFAKEI-CP  225 (363)
T ss_dssp             TT-CCHHHHHHH-HHHHHHHHHH-HHHTCCTTCCEEEECC-SHHHHHHHHHH-HHTTCCSEEEEESCHHHHHHHHHH-CT
T ss_pred             CC-CCHHHHHhh-hHHHHHHHHH-HHcCCCCCCEEEEECC-CHHHHHHHHHH-HHcCCCEEEEECCCHHHHHHHHHh-ch
Confidence            99 999999977 6899999999 7899999999999998 99999999999 678997 99999999999999999 65


Q ss_pred             EEEEcC----CchhHHHHHHHHhCCCcccEEEECCCCc-cHHHHHHHhhccCceEEe----------ecccceeeeeEEe
Q psy1959         210 AALTFT----NEKSLVNKVLEVSGGKYANVVFEAVGGE-DKTDLIRQKGAWAALTFT----------NEKSLVNKVLEVS  274 (296)
Q Consensus       210 ~~~~~~----~~~~~~~~i~~~~~~~g~d~vld~~g~~-~~~~~~~~lg~~~g~~~~----------~~~~~~~k~~~i~  274 (296)
                      .++++.    ...++.+.+++.++++++|++||++|++ .+..+++++ +++|++..          +...++.|++++.
T Consensus       226 ~~~~~~~~~~~~~~~~~~v~~~t~g~g~Dvvid~~g~~~~~~~~~~~l-~~~G~iv~~G~~~~~~~~~~~~~~~~~~~i~  304 (363)
T 3m6i_A          226 EVVTHKVERLSAEESAKKIVESFGGIEPAVALECTGVESSIAAAIWAV-KFGGKVFVIGVGKNEIQIPFMRASVREVDLQ  304 (363)
T ss_dssp             TCEEEECCSCCHHHHHHHHHHHTSSCCCSEEEECSCCHHHHHHHHHHS-CTTCEEEECCCCCSCCCCCHHHHHHHTCEEE
T ss_pred             hcccccccccchHHHHHHHHHHhCCCCCCEEEECCCChHHHHHHHHHh-cCCCEEEEEccCCCCccccHHHHHhcCcEEE
Confidence            555442    2267888999999888999999999995 899999999 88887743          2235667888888


Q ss_pred             ccc
Q psy1959         275 GGK  277 (296)
Q Consensus       275 g~~  277 (296)
                      |++
T Consensus       305 g~~  307 (363)
T 3m6i_A          305 FQY  307 (363)
T ss_dssp             ECC
T ss_pred             Ecc
Confidence            876

>1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1

Probab=100.00  E-value=9.2e-39  Score=296.06  Aligned_cols=246  Identities=22%  Similarity=0.269  Sum_probs=211.1

Q ss_pred             ccC-CcceEEecCCC-CC----CCCCCCCCCCCCCCcEEEEeeeeecChhhHHHHcCCCCCCCCCCCcCCCceeEEEEEE
Q psy1959           9 ALN-SSDLLLYNGSG-DA----KPTLPLVPGFEFSGTIIEKKMMTRINSSDLLLYNGSGDAKPTLPLVPGFEFSGTVIEV   82 (296)
Q Consensus         9 ~~~-~~~~~~~~~~~-~~----~~~p~~~~~~~~~~evlvkv~~~~i~~~D~~~~~g~~~~~~~~p~~~G~e~~G~V~~v   82 (296)
                      .++ +|+++++++++ ..    .|.|+|.++     ||||||.+++||++|++.+.|.++. ..+|.++|||++|+|+++
T Consensus        13 ~~~~~mka~~~~~~g~~l~~~~~~~P~~~~~-----eVlVkv~a~gi~~~D~~~~~G~~~~-~~~P~v~GhE~~G~V~~v   86 (380)
T 1vj0_A           13 MMGLKAHAMVLEKFNQPLVYKEFEISDIPRG-----SILVEILSAGVCGSDVHMFRGEDPR-VPLPIILGHEGAGRVVEV   86 (380)
T ss_dssp             -CCEEEEEEEBCSTTSCCEEEEEEECCCCTT-----CEEEEEEEEEECHHHHHHHTTCCTT-CCSSBCCCCEEEEEEEEE
T ss_pred             HhhhheEEEEEecCCCCeEEEEccCCCCCCC-----EEEEEEeEEeecccchHHhcCCCCC-CCCCcccCcCcEEEEEEe
Confidence            344 79999999988 44    577788889     9999999999999999999997652 467999999999999999


Q ss_pred             ccCCCCCCCCCCCCC------CCCCCCEEEEec-------------------------C---------CCCCcccceEee
Q psy1959          83 ADTKSSSTEEDDEED------VLQVGDKVLALN-------------------------K---------ELLHGFSDQCVV  122 (296)
Q Consensus        83 ~~~~~~~~~~g~~v~------~~~~Gd~V~~~~-------------------------~---------~~~g~~~~~~~v  122 (296)
                                | +|+      +|++||||++.+                         .         ...|+|+||+++
T Consensus        87 ----------G-~V~~~~~~~~~~vGdrV~~~~~~~cg~C~~C~~~g~~~~C~~~~~~g~~~~~~~~~~~~G~~aey~~v  155 (380)
T 1vj0_A           87 ----------N-GEKRDLNGELLKPGDLIVWNRGITCGECYWCKVSKEPYLCPNRKVYGINRGCSEYPHLRGCYSSHIVL  155 (380)
T ss_dssp             ----------S-SCCBCTTSCBCCTTCEEEECSEECCSSSHHHHTSCCGGGCTTCEETTTTCCSSSTTCCCSSSBSEEEE
T ss_pred             ----------C-CccccccCCCCCCCCEEEEcccCCCCCCHHHhcCCCcccCCCcceeccccccCCCCCCCccccceEEE
Confidence                      9 888      899999999741                         1         236999999999


Q ss_pred             -eCCceEECCCCCCHH-HHhhhccHHHHHHHHHHHHcC-CCCCcEEEEEcCCCcHHHHHHHHHHHhCC-CEEEEEeCCcc
Q psy1959         123 -HTNDVFKIPEKMTFE-HAASLADSYSTAQIVFSRHAK-LKEKQTVLVTAAGGGLGLAAVDMATKIYK-AKVIGVCNSED  198 (296)
Q Consensus       123 -~~~~~~~iP~~~~~~-~aa~l~~~~~ta~~~l~~~~~-~~~g~~vlI~Ga~g~vG~aa~~la~~~~g-~~Vi~~~~~~~  198 (296)
                       |++.++++|++++++ +|| +..+++|||+++ +.++ +++|++|+|+| +|++|++++|+| +..| ++|++++++++
T Consensus       156 ~~~~~~~~iP~~l~~~~~Aa-~~~~~~ta~~al-~~~~~~~~g~~VlV~G-aG~vG~~aiqla-k~~Ga~~Vi~~~~~~~  231 (380)
T 1vj0_A          156 DPETDVLKVSEKDDLDVLAM-AMCSGATAYHAF-DEYPESFAGKTVVIQG-AGPLGLFGVVIA-RSLGAENVIVIAGSPN  231 (380)
T ss_dssp             CTTCCEEEECTTSCHHHHHH-HTTHHHHHHHHH-HTCSSCCBTCEEEEEC-CSHHHHHHHHHH-HHTTBSEEEEEESCHH
T ss_pred             cccceEEECCCCCChHHhHh-hhcHHHHHHHHH-HhcCCCCCCCEEEEEC-cCHHHHHHHHHH-HHcCCceEEEEcCCHH
Confidence             999999999999999 555 555999999999 6788 99999999999 699999999999 6789 59999999999


Q ss_pred             hHHHHHhcCCcEEEEcC---CchhHHHHHHHHhCCCcccEEEECCCC-ccHHHHHHHhhccCceEEe------------e
Q psy1959         199 KTDLIRQKGAWAALTFT---NEKSLVNKVLEVSGGKYANVVFEAVGG-EDKTDLIRQKGAWAALTFT------------N  262 (296)
Q Consensus       199 ~~~~~~~~g~~~~~~~~---~~~~~~~~i~~~~~~~g~d~vld~~g~-~~~~~~~~~lg~~~g~~~~------------~  262 (296)
                      ++++++++|++.+++++   + .++.+.+++.++++++|++||++|+ +.+..+++++ +++|++..            +
T Consensus       232 ~~~~~~~lGa~~vi~~~~~~~-~~~~~~v~~~~~g~g~Dvvid~~g~~~~~~~~~~~l-~~~G~iv~~G~~~~~~~~~~~  309 (380)
T 1vj0_A          232 RLKLAEEIGADLTLNRRETSV-EERRKAIMDITHGRGADFILEATGDSRALLEGSELL-RRGGFYSVAGVAVPQDPVPFK  309 (380)
T ss_dssp             HHHHHHHTTCSEEEETTTSCH-HHHHHHHHHHTTTSCEEEEEECSSCTTHHHHHHHHE-EEEEEEEECCCCSCCCCEEEC
T ss_pred             HHHHHHHcCCcEEEeccccCc-chHHHHHHHHhCCCCCcEEEECCCCHHHHHHHHHHH-hcCCEEEEEecCCCCCCeeEc
Confidence            99999999999999887   5 6888889998887799999999998 6899999999 77766632            1


Q ss_pred             ccc-ceeeeeEEeccc
Q psy1959         263 EKS-LVNKVLEVSGGK  277 (296)
Q Consensus       263 ~~~-~~~k~~~i~g~~  277 (296)
                      ... ++.|++++.|++
T Consensus       310 ~~~~~~~~~~~i~g~~  325 (380)
T 1vj0_A          310 VYEWLVLKNATFKGIW  325 (380)
T ss_dssp             HHHHTTTTTCEEEECC
T ss_pred             hHHHHHhCCeEEEEee
Confidence            123 667888888875

>2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A*

Probab=100.00  E-value=2e-39  Score=296.43  Aligned_cols=242  Identities=23%  Similarity=0.247  Sum_probs=209.5

Q ss_pred             cceEEecCCCC-C----CCCCCCCCCCCCCCcEEEEeeeeecChhhHHHHcCCCCC--CCCCCCcCCCceeEEEEEEccC
Q psy1959          13 SDLLLYNGSGD-A----KPTLPLVPGFEFSGTIIEKKMMTRINSSDLLLYNGSGDA--KPTLPLVPGFEFSGTVIEVADT   85 (296)
Q Consensus        13 ~~~~~~~~~~~-~----~~~p~~~~~~~~~~evlvkv~~~~i~~~D~~~~~g~~~~--~~~~p~~~G~e~~G~V~~v~~~   85 (296)
                      ||+++++++++ .    .|.|+|.++     ||+|||.+++||++|++.+.|.++.  ...+|.++|||++|+|+++   
T Consensus         1 Mka~~~~~~g~~l~~~~~~~P~~~~~-----eVlVkv~a~gi~~~D~~~~~g~~~~~~~~~~p~v~G~E~~G~V~~v---   72 (343)
T 2dq4_A            1 MRALAKLAPEEGLTLVDRPVPEPGPG-----EILVRVEAASICGTDLHIWKWDAWARGRIRPPLVTGHEFSGVVEAV---   72 (343)
T ss_dssp             CEEEEECSSSSSCEEEECCCCCCCTT-----EEEEEEEEEECCHHHHHHHTTCHHHHHHCCSSEECCCEEEEEEEEE---
T ss_pred             CeEEEEeCCCCcEEEEeccCCCCCCC-----EEEEEEEEEeechhhHHHHcCCCCccccCCCCCcCCccceEEEEEE---
Confidence            67888888776 3    677888889     9999999999999999999986531  2457899999999999999   


Q ss_pred             CCCCCCCCCCCCCCCCCCEEEEec-------------------------CCCCCcccceEeeeCCceEECCCCCCHHHHh
Q psy1959          86 KSSSTEEDDEEDVLQVGDKVLALN-------------------------KELLHGFSDQCVVHTNDVFKIPEKMTFEHAA  140 (296)
Q Consensus        86 ~~~~~~~g~~v~~~~~Gd~V~~~~-------------------------~~~~g~~~~~~~v~~~~~~~iP~~~~~~~aa  140 (296)
                             |++|++|++||||++..                         ....|+|+||+++|++.++++|+++++++||
T Consensus        73 -------G~~v~~~~vGdrV~~~~~~~cg~C~~C~~g~~~~C~~~~~~g~~~~G~~aey~~v~~~~~~~iP~~~~~~~aa  145 (343)
T 2dq4_A           73 -------GPGVRRPQVGDHVSLESHIVCHACPACRTGNYHVCLNTQILGVDRDGGFAEYVVVPAENAWVNPKDLPFEVAA  145 (343)
T ss_dssp             -------CTTCCSSCTTCEEEECCEECCSCSHHHHTTCGGGCTTCEEBTTTBCCSSBSEEEEEGGGEEEECTTSCHHHHT
T ss_pred             -------CCCCCcCCCCCEEEECCCCCCCCChhhhCcCcccCCCcceecCCCCCcceeEEEEchHHeEECCCCCCHHHHH
Confidence                   99999999999999842                         1235999999999999999999999999998


Q ss_pred             hhccHHHHHHHHHHHHcCCCCCcEEEEEcCCCcHHHHHHHHHHHhCCC-EEEEEeCCcchHHHHHhcCCcEEEEcCCchh
Q psy1959         141 SLADSYSTAQIVFSRHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKA-KVIGVCNSEDKTDLIRQKGAWAALTFTNEKS  219 (296)
Q Consensus       141 ~l~~~~~ta~~~l~~~~~~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~-~Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~  219 (296)
                      .+ .++.+||+++.+.+++ +|++|+|+|+ |++|++++|+| +..|+ +|++++++++++++++++ ++.++++++ .+
T Consensus       146 ~~-~~~~ta~~~l~~~~~~-~g~~VlV~Ga-G~vG~~~~q~a-~~~Ga~~Vi~~~~~~~~~~~~~~l-a~~v~~~~~-~~  219 (343)
T 2dq4_A          146 IL-EPFGNAVHTVYAGSGV-SGKSVLITGA-GPIGLMAAMVV-RASGAGPILVSDPNPYRLAFARPY-ADRLVNPLE-ED  219 (343)
T ss_dssp             TH-HHHHHHHHHHHSTTCC-TTSCEEEECC-SHHHHHHHHHH-HHTTCCSEEEECSCHHHHGGGTTT-CSEEECTTT-SC
T ss_pred             hh-hHHHHHHHHHHHhCCC-CCCEEEEECC-CHHHHHHHHHH-HHcCCCEEEEECCCHHHHHHHHHh-HHhccCcCc-cC
Confidence            76 6889999999548889 9999999999 99999999999 67899 999999999999999999 999998877 68


Q ss_pred             HHHHHHHHhCCCcccEEEECCCC-ccHHHHHHHhhccCceEE----------eec-ccceeeeeEEeccc
Q psy1959         220 LVNKVLEVSGGKYANVVFEAVGG-EDKTDLIRQKGAWAALTF----------TNE-KSLVNKVLEVSGGK  277 (296)
Q Consensus       220 ~~~~i~~~~~~~g~d~vld~~g~-~~~~~~~~~lg~~~g~~~----------~~~-~~~~~k~~~i~g~~  277 (296)
                      +.+.+++.+ +.++|++||++|+ +.+..+++++ +++|++.          ++. ..++.|++++.|++
T Consensus       220 ~~~~~~~~~-~~g~D~vid~~g~~~~~~~~~~~l-~~~G~iv~~g~~~~~~~~~~~~~~~~~~~~i~g~~  287 (343)
T 2dq4_A          220 LLEVVRRVT-GSGVEVLLEFSGNEAAIHQGLMAL-IPGGEARILGIPSDPIRFDLAGELVMRGITAFGIA  287 (343)
T ss_dssp             HHHHHHHHH-SSCEEEEEECSCCHHHHHHHHHHE-EEEEEEEECCCCSSCEEECHHHHTGGGTCEEEECC
T ss_pred             HHHHHHHhc-CCCCCEEEECCCCHHHHHHHHHHH-hcCCEEEEEecCCCCceeCcHHHHHhCceEEEEee
Confidence            888888888 7799999999999 7899999999 7777663          223 45677888888875

>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}

Probab=100.00  E-value=6.4e-39  Score=293.69  Aligned_cols=235  Identities=19%  Similarity=0.193  Sum_probs=202.5

Q ss_pred             CcceEEecCCCCC-----CCCCCCCCCCCCCCcEEEEeeeeecChhhHHHHcCCCCCCCCCCCcCCCceeEEEEEEccCC
Q psy1959          12 SSDLLLYNGSGDA-----KPTLPLVPGFEFSGTIIEKKMMTRINSSDLLLYNGSGDAKPTLPLVPGFEFSGTVIEVADTK   86 (296)
Q Consensus        12 ~~~~~~~~~~~~~-----~~~p~~~~~~~~~~evlvkv~~~~i~~~D~~~~~g~~~~~~~~p~~~G~e~~G~V~~v~~~~   86 (296)
                      +|+++++.++++.     .|.|+|+++     ||||||.+++||++|++.+.|.++. ..+|.++|||++|+|+++    
T Consensus         4 ~mka~~~~~~~~~l~~~~~~~P~~~~~-----eVlVkv~a~gi~~~D~~~~~g~~~~-~~~p~i~G~E~~G~V~~v----   73 (348)
T 3two_A            4 QSKGFAIFSKDEHFKPHDFSRHAVGPR-----DVLIDILYAGICHSDIHSAYSEWKE-GIYPMIPGHEIAGIIKEV----   73 (348)
T ss_dssp             EEEEEEBCSTTSCCEEEEEEECCCCTT-----EEEEEEEEEEECHHHHHHHTTSSSC-CCSSBCCCCCEEEEEEEE----
T ss_pred             EEEEEEEccCCCCCeEEEeeCCCCCCC-----eEEEEEEEeeecccchhhhcCCCCC-CCCCeecCcceeEEEEEE----
Confidence            5899999988664     678888999     9999999999999999999998764 467999999999999999    


Q ss_pred             CCCCCCCCCCCCCCCCCEEEEecC-------------------------C----------CCCcccceEeeeCCceEECC
Q psy1959          87 SSSTEEDDEEDVLQVGDKVLALNK-------------------------E----------LLHGFSDQCVVHTNDVFKIP  131 (296)
Q Consensus        87 ~~~~~~g~~v~~~~~Gd~V~~~~~-------------------------~----------~~g~~~~~~~v~~~~~~~iP  131 (296)
                            |++|++|++||||+....                         .          ..|+|+||+++|++.++++|
T Consensus        74 ------G~~v~~~~vGdrV~~~~~~~~Cg~C~~C~~g~~~~c~~~~~~~~~~~~~~~~~~~~G~~aey~~v~~~~~~~iP  147 (348)
T 3two_A           74 ------GKGVKKFKIGDVVGVGCFVNSCKACKPCKEHQEQFCTKVVFTYDCLDSFHDNEPHMGGYSNNIVVDENYVISVD  147 (348)
T ss_dssp             ------CTTCCSCCTTCEEEECSEEECCSCSHHHHTTCGGGCTTCEESSSSEEGGGTTEECCCSSBSEEEEEGGGCEECC
T ss_pred             ------CCCCCCCCCCCEEEEeCCcCCCCCChhHhCCCcccCcccccccccccccccCCcCCccccceEEechhhEEECC
Confidence                  999999999999986311                         0          12999999999999999999


Q ss_pred             CCCCHHHHhhhccHHHHHHHHHHHHcCCCCCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCcEE
Q psy1959         132 EKMTFEHAASLADSYSTAQIVFSRHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAA  211 (296)
Q Consensus       132 ~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~~~  211 (296)
                      +++++++||++++++.|||+++. ..++++|++|+|+|+ |++|++++|+| +..|++|++++++++++++++++|++.+
T Consensus       148 ~~~~~~~aa~l~~~~~ta~~~l~-~~~~~~g~~VlV~Ga-G~vG~~a~qla-~~~Ga~Vi~~~~~~~~~~~~~~lGa~~v  224 (348)
T 3two_A          148 KNAPLEKVAPLLCAGITTYSPLK-FSKVTKGTKVGVAGF-GGLGSMAVKYA-VAMGAEVSVFARNEHKKQDALSMGVKHF  224 (348)
T ss_dssp             TTSCHHHHGGGGTHHHHHHHHHH-HTTCCTTCEEEEESC-SHHHHHHHHHH-HHTTCEEEEECSSSTTHHHHHHTTCSEE
T ss_pred             CCCCHHHhhhhhhhHHHHHHHHH-hcCCCCCCEEEEECC-cHHHHHHHHHH-HHCCCeEEEEeCCHHHHHHHHhcCCCee
Confidence            99999999999999999999995 569999999999997 99999999999 6789999999999999999999999988


Q ss_pred             EEcCCchhHHHHHHHHhCCCcccEEEECCCCc-cHHHHHHHhhccCceEEe------------ecccce-eeeeEEeccc
Q psy1959         212 LTFTNEKSLVNKVLEVSGGKYANVVFEAVGGE-DKTDLIRQKGAWAALTFT------------NEKSLV-NKVLEVSGGK  277 (296)
Q Consensus       212 ~~~~~~~~~~~~i~~~~~~~g~d~vld~~g~~-~~~~~~~~lg~~~g~~~~------------~~~~~~-~k~~~i~g~~  277 (296)
                      + .+. ..+         .+++|++||++|++ .+..+++++ +++|++..            +...++ .|++++.|++
T Consensus       225 ~-~~~-~~~---------~~~~D~vid~~g~~~~~~~~~~~l-~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~~~i~g~~  292 (348)
T 3two_A          225 Y-TDP-KQC---------KEELDFIISTIPTHYDLKDYLKLL-TYNGDLALVGLPPVEVAPVLSVFDFIHLGNRKVYGSL  292 (348)
T ss_dssp             E-SSG-GGC---------CSCEEEEEECCCSCCCHHHHHTTE-EEEEEEEECCCCCGGGCCEEEHHHHHHTCSCEEEECC
T ss_pred             c-CCH-HHH---------hcCCCEEEECCCcHHHHHHHHHHH-hcCCEEEEECCCCCCCcccCCHHHHHhhCCeEEEEEe
Confidence            8 322 211         12899999999996 999999999 77776632            223344 7888888876

>3krt_A Crotonyl COA reductase; structural genomics, protein structure initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces coelicolor} PDB: 3hzz_A

Probab=100.00  E-value=2e-39  Score=307.27  Aligned_cols=249  Identities=24%  Similarity=0.304  Sum_probs=210.0

Q ss_pred             CcceEEecCCC----------------CC----CCCCCCCCCCCCCCcEEEEeeeeecChhhHHHHcCCC----------
Q psy1959          12 SSDLLLYNGSG----------------DA----KPTLPLVPGFEFSGTIIEKKMMTRINSSDLLLYNGSG----------   61 (296)
Q Consensus        12 ~~~~~~~~~~~----------------~~----~~~p~~~~~~~~~~evlvkv~~~~i~~~D~~~~~g~~----------   61 (296)
                      +|+++++++++                ..    .|.|+|.++     ||||||.+++||++|++...+..          
T Consensus        30 tmkA~v~~~~~~~~~~~~~~~~~~~~~~l~~~e~p~P~~~~~-----eVlVkV~a~gic~sD~~~~~~~~~~~~~~~~~~  104 (456)
T 3krt_A           30 SYRAITVHKDETEMFAGLETRDKDPRKSIHLDDVPVPELGPG-----EALVAVMASSVNYNSVHTSIFEPLSTFGFLERY  104 (456)
T ss_dssp             CEEEEEEEGGGTTTTTTCCGGGCCHHHHCEEEEECCCCCCTT-----EEEEEEEEEEECHHHHHHHTTCSSCSHHHHHHH
T ss_pred             ceEEEEEeccccccccccccccCCCCCCcEEEEccCCCCCCC-----eEEEEEEEEEecchhhhhhhcCcccchhhhhhc
Confidence            78999999862                11    678888899     99999999999999987653321          


Q ss_pred             ------CCCCCCC-CcCCCceeEEEEEEccCCCCCCCCCCCCCCCCCCCEEEEecC------------------------
Q psy1959          62 ------DAKPTLP-LVPGFEFSGTVIEVADTKSSSTEEDDEEDVLQVGDKVLALNK------------------------  110 (296)
Q Consensus        62 ------~~~~~~p-~~~G~e~~G~V~~v~~~~~~~~~~g~~v~~~~~Gd~V~~~~~------------------------  110 (296)
                            .....+| .++|||++|+|+++          |++|++|++||+|++.+.                        
T Consensus       105 g~~~~~~~~~~~P~~v~GhE~~G~Vv~v----------G~~v~~~~vGdrV~~~~~~c~~~~~~~~~~~~~c~~~~~~G~  174 (456)
T 3krt_A          105 GRVSDLAKRHDLPYHVIGSDLAGVVLRT----------GPGVNAWQAGDEVVAHCLSVELESSDGHNDTMLDPEQRIWGF  174 (456)
T ss_dssp             HTSCHHHHTTCCSEEECCSCCEEEEEEE----------CTTCCSCCTTCEEEECCEECCCCSGGGTTSGGGCTTCEETTT
T ss_pred             cccccccccCCCCcccccceeEEEEEEE----------CCCCCCCCCCCEEEEeCCcccccccccccccccCcccccccc
Confidence                  1123567 69999999999999          999999999999997531                        


Q ss_pred             -CCCCcccceEeeeCCceEECCCCCCHHHHhhhccHHHHHHHHHHHH--cCCCCCcEEEEEcCCCcHHHHHHHHHHHhCC
Q psy1959         111 -ELLHGFSDQCVVHTNDVFKIPEKMTFEHAASLADSYSTAQIVFSRH--AKLKEKQTVLVTAAGGGLGLAAVDMATKIYK  187 (296)
Q Consensus       111 -~~~g~~~~~~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~l~~~--~~~~~g~~vlI~Ga~g~vG~aa~~la~~~~g  187 (296)
                       ...|+|+||+++|+++++++|+++++++||+++.++.|||+++...  +++++|++|+|+|++|++|++++|+| +..|
T Consensus       175 ~~~~G~~aey~~v~~~~~~~~P~~l~~~~aa~l~~~~~ta~~al~~~~~~~~~~g~~VlV~GasG~vG~~avqla-k~~G  253 (456)
T 3krt_A          175 ETNFGGLAEIALVKSNQLMPKPDHLSWEEAAAPGLVNSTAYRQLVSRNGAGMKQGDNVLIWGASGGLGSYATQFA-LAGG  253 (456)
T ss_dssp             TSSSCSSBSEEEEEGGGEEECCTTSCHHHHHSSHHHHHHHHHHHTSTTTTCCCTTCEEEETTTTSHHHHHHHHHH-HHTT
T ss_pred             CCCCCcccceEEechHHeeECCCCCCHHHHHHhhhHHHHHHHHHHhhcccCCCCCCEEEEECCCCHHHHHHHHHH-HHcC
Confidence             1149999999999999999999999999999999999999998654  78999999999999999999999999 6789


Q ss_pred             CEEEEEeCCcchHHHHHhcCCcEEEEcCCc----------------hhHHHHHHHHhCCCcccEEEECCCCccHHHHHHH
Q psy1959         188 AKVIGVCNSEDKTDLIRQKGAWAALTFTNE----------------KSLVNKVLEVSGGKYANVVFEAVGGEDKTDLIRQ  251 (296)
Q Consensus       188 ~~Vi~~~~~~~~~~~~~~~g~~~~~~~~~~----------------~~~~~~i~~~~~~~g~d~vld~~g~~~~~~~~~~  251 (296)
                      ++|++++++++|+++++++|++.++++.+.                ..+.+.+++.+++.++|++||++|++.+..++++
T Consensus       254 a~vi~~~~~~~~~~~~~~lGa~~vi~~~~~d~~~~~~~~~~~~~~~~~~~~~i~~~t~g~g~Dvvid~~G~~~~~~~~~~  333 (456)
T 3krt_A          254 ANPICVVSSPQKAEICRAMGAEAIIDRNAEGYRFWKDENTQDPKEWKRFGKRIRELTGGEDIDIVFEHPGRETFGASVFV  333 (456)
T ss_dssp             CEEEEEESSHHHHHHHHHHTCCEEEETTTTTCCSEEETTEECHHHHHHHHHHHHHHHTSCCEEEEEECSCHHHHHHHHHH
T ss_pred             CeEEEEECCHHHHHHHHhhCCcEEEecCcCcccccccccccchHHHHHHHHHHHHHhCCCCCcEEEEcCCchhHHHHHHH
Confidence            999999999999999999999999988651                1235788888888899999999999999999999


Q ss_pred             hhccCceEEe-----------ecccceeeeeEEeccc
Q psy1959         252 KGAWAALTFT-----------NEKSLVNKVLEVSGGK  277 (296)
Q Consensus       252 lg~~~g~~~~-----------~~~~~~~k~~~i~g~~  277 (296)
                      + +++|++..           +...++.+.+++.|++
T Consensus       334 l-~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~i~g~~  369 (456)
T 3krt_A          334 T-RKGGTITTCASTSGYMHEYDNRYLWMSLKRIIGSH  369 (456)
T ss_dssp             E-EEEEEEEESCCTTCSEEEEEHHHHHHTTCEEEECC
T ss_pred             h-hCCcEEEEEecCCCcccccCHHHHHhcCeEEEEec
Confidence            9 77776643           2234566777888876

>1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A

Probab=100.00  E-value=1.3e-38  Score=293.03  Aligned_cols=240  Identities=19%  Similarity=0.156  Sum_probs=204.4

Q ss_pred             CcceEEecCCCC-C------CCCCCCCCCCCCCCcEEEEeeeeecChhhHHHHcCCCCCCCCCCCcCCCceeEEEEEEcc
Q psy1959          12 SSDLLLYNGSGD-A------KPTLPLVPGFEFSGTIIEKKMMTRINSSDLLLYNGSGDAKPTLPLVPGFEFSGTVIEVAD   84 (296)
Q Consensus        12 ~~~~~~~~~~~~-~------~~~p~~~~~~~~~~evlvkv~~~~i~~~D~~~~~g~~~~~~~~p~~~G~e~~G~V~~v~~   84 (296)
                      +|+++++++++. .      .|.|+|.++     ||||||.+++||++|++.+.|.++. ..+|.++|||++|+|+++  
T Consensus         6 ~mka~~~~~~~~~l~~~~~~~~~P~~~~~-----eVlVkv~a~gi~~~D~~~~~g~~~~-~~~p~v~GhE~~G~V~~v--   77 (360)
T 1piw_A            6 KFEGIAIQSHEDWKNPKKTKYDPKPFYDH-----DIDIKIEACGVCGSDIHCAAGHWGN-MKMPLVVGHEIVGKVVKL--   77 (360)
T ss_dssp             CEEEEEECCSSSTTSCEEEEECCCCCCTT-----EEEEEEEEEEECHHHHHHHTTTTSC-CCSSEECCCCEEEEEEEE--
T ss_pred             heEEEEEecCCCCeeEEeccccCCCCCCC-----eEEEEEEEeccchhhHHHhcCCCCC-CCCCcccCcCceEEEEEe--
Confidence            699999998763 2      356677788     9999999999999999999987653 457999999999999999  


Q ss_pred             CCCCCCCCCCCCC-CCCCCCEEEEec-------------------------C--------CCCCcccceEeeeCCceEEC
Q psy1959          85 TKSSSTEEDDEED-VLQVGDKVLALN-------------------------K--------ELLHGFSDQCVVHTNDVFKI  130 (296)
Q Consensus        85 ~~~~~~~~g~~v~-~~~~Gd~V~~~~-------------------------~--------~~~g~~~~~~~v~~~~~~~i  130 (296)
                              |++|+ +|++||||+...                         .        ...|+|+||+++|++.++++
T Consensus        78 --------G~~v~~~~~~GdrV~~~~~~~~cg~C~~C~~g~~~~C~~~~~~~~~~~~~g~~~~G~~aey~~v~~~~~~~i  149 (360)
T 1piw_A           78 --------GPKSNSGLKVGQRVGVGAQVFSCLECDRCKNDNEPYCTKFVTTYSQPYEDGYVSQGGYANYVRVHEHFVVPI  149 (360)
T ss_dssp             --------CTTCCSSCCTTCEEEECSEEECCSCSHHHHTTCGGGCTTCEESSSCBCTTSCBCCCSSBSEEEEEGGGEEEC
T ss_pred             --------CCCCCCCCCCCCEEEEecCCCCCCCChhhcCCCcccCcchhhccccccCCCccCCCcceeEEEEchhheEEC
Confidence                    99999 999999995321                         0        13599999999999999999


Q ss_pred             CCCCCHHHHhhhccHHHHHHHHHHHHcCCCCCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCcE
Q psy1959         131 PEKMTFEHAASLADSYSTAQIVFSRHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWA  210 (296)
Q Consensus       131 P~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~~  210 (296)
                      |+++++++||+++.++.|||+++.+ +++++|++|+|+|+ |++|++++|+| +..|++|++++++++++++++++|++.
T Consensus       150 P~~~~~~~aa~l~~~~~ta~~~l~~-~~~~~g~~VlV~Ga-G~vG~~~~qla-k~~Ga~Vi~~~~~~~~~~~~~~lGa~~  226 (360)
T 1piw_A          150 PENIPSHLAAPLLCGGLTVYSPLVR-NGCGPGKKVGIVGL-GGIGSMGTLIS-KAMGAETYVISRSSRKREDAMKMGADH  226 (360)
T ss_dssp             CTTSCHHHHGGGGTHHHHHHHHHHH-TTCSTTCEEEEECC-SHHHHHHHHHH-HHHTCEEEEEESSSTTHHHHHHHTCSE
T ss_pred             CCCCCHHHhhhhhhhHHHHHHHHHH-cCCCCCCEEEEECC-CHHHHHHHHHH-HHCCCEEEEEcCCHHHHHHHHHcCCCE
Confidence            9999999999999999999999955 89999999999999 99999999999 668999999999999999999999999


Q ss_pred             EEEcCCch-hHHHHHHHHhCCCcccEEEECCCC---ccHHHHHHHhhccCceEEe----------ecccceeeeeEEecc
Q psy1959         211 ALTFTNEK-SLVNKVLEVSGGKYANVVFEAVGG---EDKTDLIRQKGAWAALTFT----------NEKSLVNKVLEVSGG  276 (296)
Q Consensus       211 ~~~~~~~~-~~~~~i~~~~~~~g~d~vld~~g~---~~~~~~~~~lg~~~g~~~~----------~~~~~~~k~~~i~g~  276 (296)
                      ++++++ . ++.+.+.     .++|++||++|+   +.++.+++++ +++|++..          +...++.|++++.|+
T Consensus       227 v~~~~~-~~~~~~~~~-----~~~D~vid~~g~~~~~~~~~~~~~l-~~~G~iv~~g~~~~~~~~~~~~~~~~~~~i~g~  299 (360)
T 1piw_A          227 YIATLE-EGDWGEKYF-----DTFDLIVVCASSLTDIDFNIMPKAM-KVGGRIVSISIPEQHEMLSLKPYGLKAVSISYS  299 (360)
T ss_dssp             EEEGGG-TSCHHHHSC-----SCEEEEEECCSCSTTCCTTTGGGGE-EEEEEEEECCCCCSSCCEEECGGGCBSCEEEEC
T ss_pred             EEcCcC-chHHHHHhh-----cCCCEEEECCCCCcHHHHHHHHHHh-cCCCEEEEecCCCCccccCHHHHHhCCeEEEEE
Confidence            998865 4 5544332     489999999998   6889999999 77776632          223456778888886


Q ss_pred             c
Q psy1959         277 K  277 (296)
Q Consensus       277 ~  277 (296)
                      +
T Consensus       300 ~  300 (360)
T 1piw_A          300 A  300 (360)
T ss_dssp             C
T ss_pred             e
Confidence            5

>2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida}

Probab=100.00  E-value=8.3e-39  Score=298.08  Aligned_cols=226  Identities=22%  Similarity=0.224  Sum_probs=197.5

Q ss_pred             CcceEEecCCCCC----CCCCCC-CC-----CCCCCCcEEEEeeeeecChhhHHHHcCCCCCCCCCCCcCCCceeEEEEE
Q psy1959          12 SSDLLLYNGSGDA----KPTLPL-VP-----GFEFSGTIIEKKMMTRINSSDLLLYNGSGDAKPTLPLVPGFEFSGTVIE   81 (296)
Q Consensus        12 ~~~~~~~~~~~~~----~~~p~~-~~-----~~~~~~evlvkv~~~~i~~~D~~~~~g~~~~~~~~p~~~G~e~~G~V~~   81 (296)
                      +||+++++++++.    .|.|.| .+     +     ||||||.+++||++|++++.|.++  ..+|.++|||++|+|++
T Consensus         2 ~MkA~~~~~~~~l~~~~~p~P~~~~~~~~~~~-----eVlVkv~a~gic~~D~~~~~G~~~--~~~p~v~GhE~~G~V~~   74 (398)
T 2dph_A            2 GNKSVVYHGTRDLRVETVPYPKLEHNNRKLEH-----AVILKVVSTNICGSDQHIYRGRFI--VPKGHVLGHEITGEVVE   74 (398)
T ss_dssp             CEEEEEEEETTEEEEEEECCCCSEETTEECTT-----CEEEEEEEEECCHHHHHHHTTSSC--CCTTCBCCCCEEEEEEE
T ss_pred             ccEEEEEEcCCCEEEEEccCCCCCCCcCCCCC-----eEEEEEEEEeecHHHHHHhcCCCC--CCCCcccCCceEEEEEE
Confidence            4888988887655    566766 56     8     999999999999999999998643  45799999999999999


Q ss_pred             EccCCCCCCCCCCCCCCCCCCCEEEEec------------------------------------CCCCCcccceEeeeCC
Q psy1959          82 VADTKSSSTEEDDEEDVLQVGDKVLALN------------------------------------KELLHGFSDQCVVHTN  125 (296)
Q Consensus        82 v~~~~~~~~~~g~~v~~~~~Gd~V~~~~------------------------------------~~~~g~~~~~~~v~~~  125 (296)
                      +          |++|++|++||||++..                                    ....|+|+||++++++
T Consensus        75 v----------G~~v~~~~vGDrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~~~~~~~~~~G~~~~~~~G~~aey~~v~~~  144 (398)
T 2dph_A           75 K----------GSDVELMDIGDLVSVPFNVACGRCRNCKEARSDVCENNLVNPDADLGAFGFDLKGWSGGQAEYVLVPYA  144 (398)
T ss_dssp             E----------CTTCCSCCTTCEEECCSBCCCSCSHHHHTTCGGGCCCTTTCSSSSCCBTTTTBSSCCCSSBSEEEESSH
T ss_pred             E----------CCCCCCCCCCCEEEEcCCCCCCCChhhhCcCcccCCCccccccccccccccccCCCCceeeeeEEeccc
Confidence            9          99999999999998631                                    0135999999999987


Q ss_pred             --ceEECCCCCCHHH----HhhhccHHHHHHHHHHHHcCCCCCcEEEEEcCCCcHHHHHHHHHHHhCCC-EEEEEeCCcc
Q psy1959         126 --DVFKIPEKMTFEH----AASLADSYSTAQIVFSRHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKA-KVIGVCNSED  198 (296)
Q Consensus       126 --~~~~iP~~~~~~~----aa~l~~~~~ta~~~l~~~~~~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~-~Vi~~~~~~~  198 (296)
                        .++++|+++++++    +|+++++++|||+++ +.+++++|++|+|+|+ |++|++++|+| +..|+ +|++++++++
T Consensus       145 ~~~~~~iP~~~~~~~~~~~aa~l~~~~~ta~~al-~~~~~~~g~~VlV~Ga-G~vG~~aiqla-k~~Ga~~Vi~~~~~~~  221 (398)
T 2dph_A          145 DYMLLKFGDKEQAMEKIKDLTLISDILPTGFHGC-VSAGVKPGSHVYIAGA-GPVGRCAAAGA-RLLGAACVIVGDQNPE  221 (398)
T ss_dssp             HHHCEECSSHHHHHHTHHHHTTTTTHHHHHHHHH-HHTTCCTTCEEEEECC-SHHHHHHHHHH-HHHTCSEEEEEESCHH
T ss_pred             cCeEEECCCCCChhhhcchhhhhcCHHHHHHHHH-HHcCCCCCCEEEEECC-CHHHHHHHHHH-HHcCCCEEEEEcCCHH
Confidence              8999999999998    888999999999999 7899999999999997 99999999999 56799 9999999999


Q ss_pred             hHHHHHhcCCcEEEEcCCchhH-HHHHHHHhCCCcccEEEECCCCc---------------cHHHHHHHhhccCceEE
Q psy1959         199 KTDLIRQKGAWAALTFTNEKSL-VNKVLEVSGGKYANVVFEAVGGE---------------DKTDLIRQKGAWAALTF  260 (296)
Q Consensus       199 ~~~~~~~~g~~~~~~~~~~~~~-~~~i~~~~~~~g~d~vld~~g~~---------------~~~~~~~~lg~~~g~~~  260 (296)
                      ++++++++|++ ++++++ .++ .+.+++.+++.++|++||++|++               .+..+++++ +++|++.
T Consensus       222 ~~~~a~~lGa~-~i~~~~-~~~~~~~~~~~~~g~g~Dvvid~~g~~~~~~~~~~~~~~~~~~~~~~~~~l-~~gG~iv  296 (398)
T 2dph_A          222 RLKLLSDAGFE-TIDLRN-SAPLRDQIDQILGKPEVDCGVDAVGFEAHGLGDEANTETPNGALNSLFDVV-RAGGAIG  296 (398)
T ss_dssp             HHHHHHTTTCE-EEETTS-SSCHHHHHHHHHSSSCEEEEEECSCTTCBCSGGGTTSBCTTHHHHHHHHHE-EEEEEEE
T ss_pred             HHHHHHHcCCc-EEcCCC-cchHHHHHHHHhCCCCCCEEEECCCCccccccccccccccHHHHHHHHHHH-hcCCEEE
Confidence            99999999995 788876 554 78888888877999999999985               588999999 7777663

>4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase, cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A {Streptomyces SP} PDB: 4a10_A

Probab=100.00  E-value=3.8e-39  Score=304.62  Aligned_cols=250  Identities=22%  Similarity=0.265  Sum_probs=209.2

Q ss_pred             ccC-CcceEEecCCC--------------CC----CCCCCCCCCCCCCCcEEEEeeeeecChhhHHHH------------
Q psy1959           9 ALN-SSDLLLYNGSG--------------DA----KPTLPLVPGFEFSGTIIEKKMMTRINSSDLLLY------------   57 (296)
Q Consensus         9 ~~~-~~~~~~~~~~~--------------~~----~~~p~~~~~~~~~~evlvkv~~~~i~~~D~~~~------------   57 (296)
                      .++ +|+++++++++              ..    .|.|+|.++     ||+|||.+++||++|++..            
T Consensus        20 ~~p~tmkA~v~~~~~~~~~~~~~~~~~~~~l~~~e~p~P~~~~~-----eVlVrV~a~gic~sD~~~~~~~~~~~~~~~~   94 (447)
T 4a0s_A           20 PVPDTYLALHLRAEDADMFKGVADKDVRKSLRLGEVPMPELAPD-----EVLVAVMASSINYNTVWSAMFEPIPTFHFLK   94 (447)
T ss_dssp             CCCSEEEEEEEEGGGTTTTTTCSSCCHHHHCEEEEEECCCCCTT-----EEEEEEEEEECCHHHHHHHTTCSSCHHHHHH
T ss_pred             CCChhheeeeeeccccccccccccCCCCCCceEEeccCCCCCCC-----eEEEEEEEEEECcHHhhhhccCcccchhhhh
Confidence            344 68999999987              22    678888999     9999999999999998543            


Q ss_pred             ----cCCCCCCCCCC-CcCCCceeEEEEEEccCCCCCCCCCCCCCCCCCCCEEEEecC----------------------
Q psy1959          58 ----NGSGDAKPTLP-LVPGFEFSGTVIEVADTKSSSTEEDDEEDVLQVGDKVLALNK----------------------  110 (296)
Q Consensus        58 ----~g~~~~~~~~p-~~~G~e~~G~V~~v~~~~~~~~~~g~~v~~~~~Gd~V~~~~~----------------------  110 (296)
                          .|.+.....+| .++|||++|+|+++          |++|++|++||||++.+.                      
T Consensus        95 ~~~~~g~~~~~~~~P~~v~GhE~~G~V~~v----------G~~V~~~~vGDrV~~~~~~~~~~~~~~~~~~~~c~~~~~~  164 (447)
T 4a0s_A           95 QNARQGGWATRHDQPYHVLGSDCSGVVVRT----------GIGVRRWKPGDHVIVHPAHVDEQEPATHGDGMLGTEQRAW  164 (447)
T ss_dssp             HHHTTCGGGGGGCCSEEECCSCEEEEEEEE----------CTTCCSCCTTCEEEECSEECCTTSGGGGTCTTCSTTCEET
T ss_pred             hhcccCccccccCCCCcccccceeEEEEEE----------CCCCCCCCCCCEEEEecCcCcCcccccccccccccccccc
Confidence                22222223567 69999999999999          999999999999998541                      


Q ss_pred             ---CCCCcccceEeeeCCceEECCCCCCHHHHhhhccHHHHHHHHHHH--HcCCCCCcEEEEEcCCCcHHHHHHHHHHHh
Q psy1959         111 ---ELLHGFSDQCVVHTNDVFKIPEKMTFEHAASLADSYSTAQIVFSR--HAKLKEKQTVLVTAAGGGLGLAAVDMATKI  185 (296)
Q Consensus       111 ---~~~g~~~~~~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~l~~--~~~~~~g~~vlI~Ga~g~vG~aa~~la~~~  185 (296)
                         ...|+|+||+++|+++++++|+++++++||+++.++.|||+++..  .+++++|++|+|+|++|++|++++|+| +.
T Consensus       165 G~~~~~G~~aey~~v~~~~~~~iP~~ls~~~aA~l~~~~~tA~~al~~~~~~~~~~g~~VlV~GasG~iG~~a~qla-~~  243 (447)
T 4a0s_A          165 GFETNFGGLAEYGVVRASQLLPKPAHLTWEEAAVSPLCAGTAYRMLVSDRGAQMKQGDIVLIWGASGGLGSYAIQFV-KN  243 (447)
T ss_dssp             TTTSSSCSSBSEEEEEGGGEEECCTTSCHHHHHTSHHHHHHHHHHHTSTTTTCCCTTCEEEETTTTSHHHHHHHHHH-HH
T ss_pred             cccCCCCceeeeeecCHHHcEECCCCCCHHHHHHhHHHHHHHHHHHHhhhccCCCCCCEEEEECCCCHHHHHHHHHH-HH
Confidence               014999999999999999999999999999999999999999864  389999999999999999999999999 67


Q ss_pred             CCCEEEEEeCCcchHHHHHhcCCcEEEEcCCchh------------------HHHHHHHHhCCCcccEEEECCCCccHHH
Q psy1959         186 YKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKS------------------LVNKVLEVSGGKYANVVFEAVGGEDKTD  247 (296)
Q Consensus       186 ~g~~Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~------------------~~~~i~~~~~~~g~d~vld~~g~~~~~~  247 (296)
                      .|++|++++++++++++++++|++.++++.+ .+                  +.+.+++.+ +.++|++||++|++.+..
T Consensus       244 ~Ga~vi~~~~~~~~~~~~~~lGa~~~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-g~g~Dvvid~~G~~~~~~  321 (447)
T 4a0s_A          244 GGGIPVAVVSSAQKEAAVRALGCDLVINRAE-LGITDDIADDPRRVVETGRKLAKLVVEKA-GREPDIVFEHTGRVTFGL  321 (447)
T ss_dssp             TTCEEEEEESSHHHHHHHHHTTCCCEEEHHH-HTCCTTGGGCHHHHHHHHHHHHHHHHHHH-SSCCSEEEECSCHHHHHH
T ss_pred             cCCEEEEEeCCHHHHHHHHhcCCCEEEeccc-ccccccccccccccchhhhHHHHHHHHHh-CCCceEEEECCCchHHHH
Confidence            8999999999999999999999998887643 22                  367777888 679999999999988999


Q ss_pred             HHHHhhccCceEEee-----------cccceeeeeEEeccc
Q psy1959         248 LIRQKGAWAALTFTN-----------EKSLVNKVLEVSGGK  277 (296)
Q Consensus       248 ~~~~lg~~~g~~~~~-----------~~~~~~k~~~i~g~~  277 (296)
                      +++++ +++|++..-           ...++.+++++.|++
T Consensus       322 ~~~~l-~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~i~g~~  361 (447)
T 4a0s_A          322 SVIVA-RRGGTVVTCGSSSGYLHTFDNRYLWMKLKKIVGSH  361 (447)
T ss_dssp             HHHHS-CTTCEEEESCCTTCSEEEEEHHHHHHTTCEEEECC
T ss_pred             HHHHH-hcCCEEEEEecCCCcccccCHHHHHhCCCEEEecC
Confidence            99999 777776332           224566778888876

>2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A*

Probab=100.00  E-value=2.5e-38  Score=291.36  Aligned_cols=243  Identities=24%  Similarity=0.282  Sum_probs=211.1

Q ss_pred             CcceEEecCCCC----------CCCCCCCCCCCCCCCcEEEEeeeeecChhhHHHHcCCCCCCCCCCCcCCCceeEEEEE
Q psy1959          12 SSDLLLYNGSGD----------AKPTLPLVPGFEFSGTIIEKKMMTRINSSDLLLYNGSGDAKPTLPLVPGFEFSGTVIE   81 (296)
Q Consensus        12 ~~~~~~~~~~~~----------~~~~p~~~~~~~~~~evlvkv~~~~i~~~D~~~~~g~~~~~~~~p~~~G~e~~G~V~~   81 (296)
                      +||++++++++.          ..|.|+|.++     ||+|||.+++||++|++.+.|.++....+|.++|||++|+|++
T Consensus        23 ~MkA~~~~~~g~~~~~~l~~~~~~p~P~~~~~-----eVlVkv~a~gi~~~D~~~~~G~~~~~~~~P~i~G~E~~G~V~~   97 (362)
T 2c0c_A           23 MMQKLVVTRLSPNFREAVTLSRDCPVPLPGDG-----DLLVRNRFVGVNASDINYSAGRYDPSVKPPFDIGFEGIGEVVA   97 (362)
T ss_dssp             EEEEEEECSCCSSHHHHEEEEEEEECCCCCTT-----EEEEEEEEEECCTTHHHHHTTTTCTTCCSCEECCSEEEEEEEE
T ss_pred             hceEEEEeecCCCccceeEEEeecCCCCCCCC-----eEEEEEEEeccCHHHHHHhcCCCCCCCCCCCCCCceeEEEEEE
Confidence            589999988753          2567788889     9999999999999999999997754456799999999999999


Q ss_pred             EccCCCCCCCCCCCCC-CCCCCCEEEEecCCCCCcccceEeeeCCceEECCCCCCHHHHhhhccHHHHHHHHHHHHcCCC
Q psy1959          82 VADTKSSSTEEDDEED-VLQVGDKVLALNKELLHGFSDQCVVHTNDVFKIPEKMTFEHAASLADSYSTAQIVFSRHAKLK  160 (296)
Q Consensus        82 v~~~~~~~~~~g~~v~-~~~~Gd~V~~~~~~~~g~~~~~~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~l~~~~~~~  160 (296)
                      +          |++|+ +|++||||++...   |+|+||+++|++.++++|+. + .++|+++.+++|||+++.+.++++
T Consensus        98 v----------G~~V~~~~~vGdrV~~~~~---G~~aey~~v~~~~~~~~P~~-~-~~aaal~~~~~ta~~al~~~~~~~  162 (362)
T 2c0c_A           98 L----------GLSASARYTVGQAVAYMAP---GSFAEYTVVPASIATPVPSV-K-PEYLTLLVSGTTAYISLKELGGLS  162 (362)
T ss_dssp             E----------CTTGGGTCCTTCEEEEECS---CCSBSEEEEEGGGCEECSSS-C-HHHHTTTTHHHHHHHHHHHHTCCC
T ss_pred             E----------CCCccCCCCCCCEEEEccC---CcceeEEEEcHHHeEECCCC-c-hHhhcccchHHHHHHHHHHhcCCC
Confidence            9          99999 9999999998865   99999999999999999996 4 456779999999999998889999


Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCcEEEEcCCchhHHHHHHHHhCCCcccEEEECC
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNKVLEVSGGKYANVVFEAV  240 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~g~d~vld~~  240 (296)
                      +|++|+|+|++|++|++++|+| +..|++|++++++++++++++++|++.++++++ .++.+.+++.+ +.++|++|||+
T Consensus       163 ~g~~VlV~Ga~G~iG~~~~q~a-~~~Ga~Vi~~~~~~~~~~~~~~~Ga~~~~~~~~-~~~~~~~~~~~-~~g~D~vid~~  239 (362)
T 2c0c_A          163 EGKKVLVTAAAGGTGQFAMQLS-KKAKCHVIGTCSSDEKSAFLKSLGCDRPINYKT-EPVGTVLKQEY-PEGVDVVYESV  239 (362)
T ss_dssp             TTCEEEETTTTBTTHHHHHHHH-HHTTCEEEEEESSHHHHHHHHHTTCSEEEETTT-SCHHHHHHHHC-TTCEEEEEECS
T ss_pred             CCCEEEEeCCCcHHHHHHHHHH-HhCCCEEEEEECCHHHHHHHHHcCCcEEEecCC-hhHHHHHHHhc-CCCCCEEEECC
Confidence            9999999998899999999999 668999999999999999999999999999876 67777787776 46899999999


Q ss_pred             CCccHHHHHHHhhccCceEEeec--------------------ccceeeeeEEecccc
Q psy1959         241 GGEDKTDLIRQKGAWAALTFTNE--------------------KSLVNKVLEVSGGKY  278 (296)
Q Consensus       241 g~~~~~~~~~~lg~~~g~~~~~~--------------------~~~~~k~~~i~g~~~  278 (296)
                      |++.+..+++++ +++|++..-.                    ..++.|++++.|++.
T Consensus       240 g~~~~~~~~~~l-~~~G~iv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~  296 (362)
T 2c0c_A          240 GGAMFDLAVDAL-ATKGRLIVIGFISGYQTPTGLSPVKAGTLPAKLLKKSASVQGFFL  296 (362)
T ss_dssp             CTHHHHHHHHHE-EEEEEEEECCCGGGTTSSSCCCCCCCTTHHHHHHHHTCEEEECCG
T ss_pred             CHHHHHHHHHHH-hcCCEEEEEeCCCCcCcccccccccccccHHHHHhhcceEEEEEh
Confidence            998899999999 7777664311                    124567888888763

>1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=100.00  E-value=3.7e-38  Score=290.93  Aligned_cols=240  Identities=20%  Similarity=0.195  Sum_probs=203.0

Q ss_pred             CcceEEecCCCCC-----CCCCCCCCCCCCCCcEEEEeeeeecChhhHHHHcCCCCCCCCCCCcCCCceeEEEEEEccCC
Q psy1959          12 SSDLLLYNGSGDA-----KPTLPLVPGFEFSGTIIEKKMMTRINSSDLLLYNGSGDAKPTLPLVPGFEFSGTVIEVADTK   86 (296)
Q Consensus        12 ~~~~~~~~~~~~~-----~~~p~~~~~~~~~~evlvkv~~~~i~~~D~~~~~g~~~~~~~~p~~~G~e~~G~V~~v~~~~   86 (296)
                      .|+++++.++++.     .|.|+|+++     ||||||.+++||++|++.+.|.++. ..+|.++|||++|+|+++    
T Consensus        22 ~~~a~~~~~~~~~l~~~~~p~P~~~~~-----eVlVkv~a~gi~~~D~~~~~g~~~~-~~~P~v~GhE~~G~V~~v----   91 (369)
T 1uuf_A           22 KIKAVGAYSAKQPLEPMDITRREPGPN-----DVKIEIAYCGVCHSDLHQVRSEWAG-TVYPCVPGHEIVGRVVAV----   91 (369)
T ss_dssp             -CEEEEBSSTTSCCEEEECCCCCCCTT-----EEEEEEEEEECCHHHHHHHHCTTSC-CCSSBCCCCCEEEEEEEE----
T ss_pred             eEEEEEEcCCCCCcEEEEecCCCCCCC-----eEEEEEEEEeecHHHHHHhcCCCCC-CCCCeecccCceEEEEEE----
Confidence            5788887765443     678888889     9999999999999999999987643 457999999999999999    


Q ss_pred             CCCCCCCCCCCCCCCCCEEEEecC----------------------------------CCCCcccceEeeeCCceEECCC
Q psy1959          87 SSSTEEDDEEDVLQVGDKVLALNK----------------------------------ELLHGFSDQCVVHTNDVFKIPE  132 (296)
Q Consensus        87 ~~~~~~g~~v~~~~~Gd~V~~~~~----------------------------------~~~g~~~~~~~v~~~~~~~iP~  132 (296)
                            |++|++|++||||++.+.                                  ...|+|+||+++|++.++++|+
T Consensus        92 ------G~~V~~~~vGDrV~~~~~~~~Cg~C~~C~~g~~~~C~~~~~~~~~~~~~~g~~~~G~~aeyv~v~~~~~~~~P~  165 (369)
T 1uuf_A           92 ------GDQVEKYAPGDLVGVGCIVDSCKHCEECEDGLENYCDHMTGTYNSPTPDEPGHTLGGYSQQIVVHERYVLRIRH  165 (369)
T ss_dssp             ------CTTCCSCCTTCEEEECSEEECCSSSHHHHTTCGGGCTTCEETTTSBCSSTTSBCCCSSBSEEEEEGGGCEECCS
T ss_pred             ------CCCCCCCCCCCEEEEccCCCCCCCCcccCCCCcccCcchhcccccccccCCCCCCCcccceEEEcchhEEECCC
Confidence                  999999999999986310                                  1259999999999999999999


Q ss_pred             C-CCHHHHhhhccHHHHHHHHHHHHcCCCCCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCcEE
Q psy1959         133 K-MTFEHAASLADSYSTAQIVFSRHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAA  211 (296)
Q Consensus       133 ~-~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~~~  211 (296)
                      + +++++||+++.++.|||+++.+ .++++|++|+|+|+ |++|++++|+| +..|++|++++++++++++++++|++.+
T Consensus       166 ~~ls~~~aa~l~~~~~tA~~al~~-~~~~~g~~VlV~Ga-G~vG~~aiqla-k~~Ga~Vi~~~~~~~~~~~a~~lGa~~v  242 (369)
T 1uuf_A          166 PQEQLAAVAPLLCAGITTYSPLRH-WQAGPGKKVGVVGI-GGLGHMGIKLA-HAMGAHVVAFTTSEAKREAAKALGADEV  242 (369)
T ss_dssp             CGGGHHHHGGGGTHHHHHHHHHHH-TTCCTTCEEEEECC-SHHHHHHHHHH-HHTTCEEEEEESSGGGHHHHHHHTCSEE
T ss_pred             CCCCHHHhhhhhhhHHHHHHHHHh-cCCCCCCEEEEECC-CHHHHHHHHHH-HHCCCEEEEEeCCHHHHHHHHHcCCcEE
Confidence            9 9999999999999999999954 69999999999997 99999999999 6789999999999999999999999999


Q ss_pred             EEcCCchhHHHHHHHHhCCCcccEEEECCCCc-cHHHHHHHhhccCceEEe-----------ecccceeeeeEEeccc
Q psy1959         212 LTFTNEKSLVNKVLEVSGGKYANVVFEAVGGE-DKTDLIRQKGAWAALTFT-----------NEKSLVNKVLEVSGGK  277 (296)
Q Consensus       212 ~~~~~~~~~~~~i~~~~~~~g~d~vld~~g~~-~~~~~~~~lg~~~g~~~~-----------~~~~~~~k~~~i~g~~  277 (296)
                      +++.+ .++.+   +..  .++|++||++|++ .++.+++++ +++|++..           +...++.|++++.|++
T Consensus       243 i~~~~-~~~~~---~~~--~g~Dvvid~~g~~~~~~~~~~~l-~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~i~g~~  313 (369)
T 1uuf_A          243 VNSRN-ADEMA---AHL--KSFDFILNTVAAPHNLDDFTTLL-KRDGTMTLVGAPATPHKSPEVFNLIMKRRAIAGSM  313 (369)
T ss_dssp             EETTC-HHHHH---TTT--TCEEEEEECCSSCCCHHHHHTTE-EEEEEEEECCCC-------CHHHHHTTTCEEEECC
T ss_pred             ecccc-HHHHH---Hhh--cCCCEEEECCCCHHHHHHHHHHh-ccCCEEEEeccCCCCccccCHHHHHhCCcEEEEee
Confidence            98876 44332   332  4899999999984 799999999 77776632           2223456788888875

>2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus}

Probab=100.00  E-value=1.2e-38  Score=291.33  Aligned_cols=243  Identities=19%  Similarity=0.249  Sum_probs=204.4

Q ss_pred             CCcceEEecCCCC-C----CCCCCCCCCCCCCCcEEEEeeeeecChhhHHHHcCCCCC-CCCCCCcCCCceeEEEEEEcc
Q psy1959          11 NSSDLLLYNGSGD-A----KPTLPLVPGFEFSGTIIEKKMMTRINSSDLLLYNGSGDA-KPTLPLVPGFEFSGTVIEVAD   84 (296)
Q Consensus        11 ~~~~~~~~~~~~~-~----~~~p~~~~~~~~~~evlvkv~~~~i~~~D~~~~~g~~~~-~~~~p~~~G~e~~G~V~~v~~   84 (296)
                      .+||+++++++++ .    .|.|+|.++     ||+|||.+++||++|++.+.|.++. ...+|.++|||++|+|+++  
T Consensus         2 ~~mka~~~~~~g~~l~~~~~~~P~~~~~-----eVlVkv~a~gi~~~D~~~~~g~~~~~~~~~p~i~G~E~~G~V~~v--   74 (344)
T 2h6e_A            2 VKSKAALLKKFSEPLSIEDVNIPEPQGE-----EVLIRIGGAGVCRTDLRVWKGVEAKQGFRLPIILGHENAGTIVEV--   74 (344)
T ss_dssp             EEEEBCEECSCCC-----EEEECCCCTT-----CEEEEEEEEECCHHHHHHHTTSCCCTTCCSSEECCCCEEEEEEEE--
T ss_pred             ceeEEEEEecCCCCCeEEEeeCCCCCCC-----EEEEEEEEEEechhhHHHHcCCCcccCCCCCccccccceEEEEEE--
Confidence            3589999998864 2    567788888     9999999999999999999987652 2467999999999999999  


Q ss_pred             CCCCCCCCCCCCCCCCCCCEEEEecC-------------------------CCCCcccceEeee-CCceEECCCCCCHHH
Q psy1959          85 TKSSSTEEDDEEDVLQVGDKVLALNK-------------------------ELLHGFSDQCVVH-TNDVFKIPEKMTFEH  138 (296)
Q Consensus        85 ~~~~~~~~g~~v~~~~~Gd~V~~~~~-------------------------~~~g~~~~~~~v~-~~~~~~iP~~~~~~~  138 (296)
                              |++ ++|++||||++...                         ...|+|+||+++| ++.++++ +++++++
T Consensus        75 --------G~~-~~~~~GdrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~~G~~~~G~~aey~~v~~~~~~~~i-~~l~~~~  144 (344)
T 2h6e_A           75 --------GEL-AKVKKGDNVVVYATWGDLTCRYCREGKFNICKNQIIPGQTTNGGFSEYMLVKSSRWLVKL-NSLSPVE  144 (344)
T ss_dssp             --------CTT-CCCCTTCEEEECSCBCCSCSTTGGGTCGGGCTTCBCBTTTBCCSSBSEEEESCGGGEEEE-SSSCHHH
T ss_pred             --------CCC-CCCCCCCEEEECCCCCCCCChhhhCCCcccCCCccccccccCCcceeeEEecCcccEEEe-CCCCHHH
Confidence                    988 88999999987531                         1359999999999 9999999 9999999


Q ss_pred             HhhhccHHHHHHHHHHHH----cCCCCCcEEEEEcCCCcHHHHHHHHHHHhC--CCEEEEEeCCcchHHHHHhcCCcEEE
Q psy1959         139 AASLADSYSTAQIVFSRH----AKLKEKQTVLVTAAGGGLGLAAVDMATKIY--KAKVIGVCNSEDKTDLIRQKGAWAAL  212 (296)
Q Consensus       139 aa~l~~~~~ta~~~l~~~----~~~~~g~~vlI~Ga~g~vG~aa~~la~~~~--g~~Vi~~~~~~~~~~~~~~~g~~~~~  212 (296)
                      ||++++++.|||+++.+.    +++ +|++|+|+|+ |++|++++|+| +..  |++|++++++++++++++++|++.++
T Consensus       145 aa~l~~~~~ta~~al~~~~~~~~~~-~g~~VlV~Ga-G~vG~~aiqla-k~~~~Ga~Vi~~~~~~~~~~~~~~lGa~~vi  221 (344)
T 2h6e_A          145 AAPLADAGTTSMGAIRQALPFISKF-AEPVVIVNGI-GGLAVYTIQIL-KALMKNITIVGISRSKKHRDFALELGADYVS  221 (344)
T ss_dssp             HGGGGTHHHHHHHHHHHHHHHHTTC-SSCEEEEECC-SHHHHHHHHHH-HHHCTTCEEEEECSCHHHHHHHHHHTCSEEE
T ss_pred             hhhhhhhhHHHHHHHHhhhhcccCC-CCCEEEEECC-CHHHHHHHHHH-HHhcCCCEEEEEeCCHHHHHHHHHhCCCEEe
Confidence            999999999999999654    288 9999999999 99999999999 567  99999999999999999999999988


Q ss_pred             EcCCchhHHHHHHHHhCCCcccEEEECCCCc-cHHHHHHHhhccCceEEee----------cccceeeeeEEeccc
Q psy1959         213 TFTNEKSLVNKVLEVSGGKYANVVFEAVGGE-DKTDLIRQKGAWAALTFTN----------EKSLVNKVLEVSGGK  277 (296)
Q Consensus       213 ~~~~~~~~~~~i~~~~~~~g~d~vld~~g~~-~~~~~~~~lg~~~g~~~~~----------~~~~~~k~~~i~g~~  277 (296)
                      ++++ .  .+.+.+++++.++|++||++|++ .+..+++++ +++|++..-          ...++.|++++.|++
T Consensus       222 ~~~~-~--~~~~~~~~~g~g~D~vid~~g~~~~~~~~~~~l-~~~G~iv~~g~~~~~~~~~~~~~~~~~~~i~g~~  293 (344)
T 2h6e_A          222 EMKD-A--ESLINKLTDGLGASIAIDLVGTEETTYNLGKLL-AQEGAIILVGMEGKRVSLEAFDTAVWNKKLLGSN  293 (344)
T ss_dssp             CHHH-H--HHHHHHHHTTCCEEEEEESSCCHHHHHHHHHHE-EEEEEEEECCCCSSCCCCCHHHHHHTTCEEEECC
T ss_pred             cccc-c--hHHHHHhhcCCCccEEEECCCChHHHHHHHHHh-hcCCEEEEeCCCCCCcccCHHHHhhCCcEEEEEe
Confidence            7643 1  22345556566899999999995 899999999 777776331          224566788888875

>2vn8_A Reticulon-4-interacting protein 1; mitochondrion, transit peptide, receptor inhibitor; HET: NDP CIT; 2.1A {Homo sapiens}

Probab=100.00  E-value=8.3e-38  Score=289.10  Aligned_cols=236  Identities=26%  Similarity=0.320  Sum_probs=197.6

Q ss_pred             eEeecccC-CcceEEecCCCCC--------CCCCCC-CCCCCCCCcEEEEeeeeecChhhHHHHcCCCC-----------
Q psy1959           4 DIQCCALN-SSDLLLYNGSGDA--------KPTLPL-VPGFEFSGTIIEKKMMTRINSSDLLLYNGSGD-----------   62 (296)
Q Consensus         4 ~~~~~~~~-~~~~~~~~~~~~~--------~~~p~~-~~~~~~~~evlvkv~~~~i~~~D~~~~~g~~~-----------   62 (296)
                      +.++..+. .|+++++++++..        .|.|.| +++     ||||||.+++||++|++.+.|...           
T Consensus        12 ~~~~~~~~~~mka~~~~~~g~~~~l~~~~~~p~P~~~~~~-----eVlVkv~a~gi~~~D~~~~~G~~~~~~~~~~~~~~   86 (375)
T 2vn8_A           12 DLGTENLYFQSMAWVIDKYGKNEVLRFTQNMMMPIIHYPN-----EVIVKVHAASVNPIDVNMRSGYGATALNMKRDPLH   86 (375)
T ss_dssp             ------CCCCEEEEEBSSCCSGGGCEEEEEECCCCCCSTT-----EEEEEEEEEEECHHHHHHHTTTTHHHHHHHHCTTC
T ss_pred             cccccccCccceeEEeccCCCccceEEeccccCCCCCCCC-----EEEEEEEEEEcCHHHHHHhccCccccccccccccc
Confidence            34555554 7899999887532        456664 788     999999999999999999988632           


Q ss_pred             ---CCCCCCCcCCCceeEEEEEEccCCCCCCCCCCCCCCCCCCCEEEEecC-CCCCcccceEeeeCCceEECCCCCCHHH
Q psy1959          63 ---AKPTLPLVPGFEFSGTVIEVADTKSSSTEEDDEEDVLQVGDKVLALNK-ELLHGFSDQCVVHTNDVFKIPEKMTFEH  138 (296)
Q Consensus        63 ---~~~~~p~~~G~e~~G~V~~v~~~~~~~~~~g~~v~~~~~Gd~V~~~~~-~~~g~~~~~~~v~~~~~~~iP~~~~~~~  138 (296)
                         ....+|.++|||++|+|+++          |++|++|++||||++... ...|+|+||++++++.++++|+++++++
T Consensus        87 ~~~~~~~~P~v~G~E~~G~V~~v----------G~~V~~~~vGDrV~~~~~~~~~G~~aey~~v~~~~~~~iP~~ls~~~  156 (375)
T 2vn8_A           87 VKIKGEEFPLTLGRDVSGVVMEC----------GLDVKYFKPGDEVWAAVPPWKQGTLSEFVVVSGNEVSHKPKSLTHTQ  156 (375)
T ss_dssp             CSCTTTTCSBCCCCEEEEEEEEE----------CTTCCSCCTTCEEEEECCTTSCCSSBSEEEEEGGGEEECCTTSCHHH
T ss_pred             cccccccCCcccceeeeEEEEEe----------CCCCCCCCCCCEEEEecCCCCCccceeEEEEcHHHeeeCCCCCCHHH
Confidence               11237999999999999999          999999999999998753 2259999999999999999999999999


Q ss_pred             HhhhccHHHHHHHHHHHHcC----CCCCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCcEEEEc
Q psy1959         139 AASLADSYSTAQIVFSRHAK----LKEKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTF  214 (296)
Q Consensus       139 aa~l~~~~~ta~~~l~~~~~----~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~~~~~~  214 (296)
                      ||+++.+++|||+++.+.++    +++|++|+|+|++|++|++++|+| +..|++|++++ ++++.++++++|++.++++
T Consensus       157 Aa~l~~~~~tA~~al~~~~~~~~~~~~g~~VlV~Ga~G~vG~~~~qla-~~~Ga~Vi~~~-~~~~~~~~~~lGa~~v~~~  234 (375)
T 2vn8_A          157 AASLPYVALTAWSAINKVGGLNDKNCTGKRVLILGASGGVGTFAIQVM-KAWDAHVTAVC-SQDASELVRKLGADDVIDY  234 (375)
T ss_dssp             HTTSHHHHHHHHHHHTTTTCCCTTTCTTCEEEEETTTSHHHHHHHHHH-HHTTCEEEEEE-CGGGHHHHHHTTCSEEEET
T ss_pred             HhhhHHHHHHHHHHHHHhcccccccCCCCEEEEECCCCHHHHHHHHHH-HhCCCEEEEEe-ChHHHHHHHHcCCCEEEEC
Confidence            99999999999999977788    999999999998899999999999 67899999988 6789999999999999998


Q ss_pred             CCchhHHHHHHHHhCCCcccEEEECCCCc--cHHHHHHHhhccCceEEe
Q psy1959         215 TNEKSLVNKVLEVSGGKYANVVFEAVGGE--DKTDLIRQKGAWAALTFT  261 (296)
Q Consensus       215 ~~~~~~~~~i~~~~~~~g~d~vld~~g~~--~~~~~~~~lg~~~g~~~~  261 (296)
                      ++ .++.+.+.+.   .++|++|||+|++  .+..+++++ +++|++..
T Consensus       235 ~~-~~~~~~~~~~---~g~D~vid~~g~~~~~~~~~~~~l-~~~G~iv~  278 (375)
T 2vn8_A          235 KS-GSVEEQLKSL---KPFDFILDNVGGSTETWAPDFLKK-WSGATYVT  278 (375)
T ss_dssp             TS-SCHHHHHHTS---CCBSEEEESSCTTHHHHGGGGBCS-SSCCEEEE
T ss_pred             Cc-hHHHHHHhhc---CCCCEEEECCCChhhhhHHHHHhh-cCCcEEEE
Confidence            76 5666666543   4899999999986  448888999 78887744

>1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1

Probab=100.00  E-value=7.4e-38  Score=291.58  Aligned_cols=233  Identities=24%  Similarity=0.250  Sum_probs=197.6

Q ss_pred             CcceEEecCCCCC----CCCCCCC-CC-CCCCCcEEEEeeeeecChhhHHHHcCCCCCCCCCCCcCCCceeEEEEEEccC
Q psy1959          12 SSDLLLYNGSGDA----KPTLPLV-PG-FEFSGTIIEKKMMTRINSSDLLLYNGSGDAKPTLPLVPGFEFSGTVIEVADT   85 (296)
Q Consensus        12 ~~~~~~~~~~~~~----~~~p~~~-~~-~~~~~evlvkv~~~~i~~~D~~~~~g~~~~~~~~p~~~G~e~~G~V~~v~~~   85 (296)
                      +||++++++++..    .|.|+|. ++ .+.++||||||.+++||++|++++.|.++  ..+|.++|||++|+|+++   
T Consensus         2 ~Mka~~~~~~~~l~~~~~p~P~~~~~~e~~~~~eVlVkv~a~gi~~~D~~~~~g~~~--~~~p~v~GhE~~G~V~~v---   76 (398)
T 1kol_A            2 GNRGVVYLGSGKVEVQKIDYPKMQDPRGKKIEHGVILKVVSTNICGSDQHMVRGRTT--AQVGLVLGHEITGEVIEK---   76 (398)
T ss_dssp             CEEEEEEEETTEEEEEEECCCCSBCTTSCBCSSCEEEEEEEEECCHHHHHHHTTCSC--CCTTCBCCCCEEEEEEEE---
T ss_pred             ccEEEEEecCCceEEEEecCCCCCCCCcccccceEEEEEEEEeechhhHHHHcCCCC--CCCCcccCcccEEEEEEE---
Confidence            5888888877655    5777776 77 00111299999999999999999998754  356899999999999999   


Q ss_pred             CCCCCCCCCCCCCCCCCCEEEEec------------------------------C-----CCCCcccceEeeeCC--ceE
Q psy1959          86 KSSSTEEDDEEDVLQVGDKVLALN------------------------------K-----ELLHGFSDQCVVHTN--DVF  128 (296)
Q Consensus        86 ~~~~~~~g~~v~~~~~Gd~V~~~~------------------------------~-----~~~g~~~~~~~v~~~--~~~  128 (296)
                             |++|++|++||||+...                              .     .+.|+|+||+++|+.  .++
T Consensus        77 -------G~~v~~~~vGDrV~~~~~~~cg~C~~C~~g~~~~C~~~~~~~~~~~~g~~~~~~~~G~~aey~~v~~~~~~~~  149 (398)
T 1kol_A           77 -------GRDVENLQIGDLVSVPFNVACGRCRSCKEMHTGVCLTVNPARAGGAYGYVDMGDWTGGQAEYVLVPYADFNLL  149 (398)
T ss_dssp             -------CTTCCSCCTTCEEECCSEECCSSSHHHHTTCGGGCSSSCSSSSCEEBTCTTSCCBCCCSBSEEEESSHHHHCE
T ss_pred             -------CCCCCcCCCCCEEEECCcCCCCCChHHhCcCcccCCCcccccccceeeeccCCCCCceeeeEEEecchhCeEE
Confidence                   99999999999998521                              0     135999999999987  899


Q ss_pred             ECCCCCCHHH----HhhhccHHHHHHHHHHHHcCCCCCcEEEEEcCCCcHHHHHHHHHHHhCCC-EEEEEeCCcchHHHH
Q psy1959         129 KIPEKMTFEH----AASLADSYSTAQIVFSRHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKA-KVIGVCNSEDKTDLI  203 (296)
Q Consensus       129 ~iP~~~~~~~----aa~l~~~~~ta~~~l~~~~~~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~-~Vi~~~~~~~~~~~~  203 (296)
                      ++|+++++++    +|+|+.++.|||+++. .+++++|++|+|+|+ |++|++++|+| +.+|+ +|++++++++|++++
T Consensus       150 ~~P~~~~~~~~~~~aa~l~~~~~ta~~al~-~~~~~~g~~VlV~Ga-G~vG~~aiqlA-k~~Ga~~Vi~~~~~~~~~~~a  226 (398)
T 1kol_A          150 KLPDRDKAMEKIRDLTCLSDILPTGYHGAV-TAGVGPGSTVYVAGA-GPVGLAAAASA-RLLGAAVVIVGDLNPARLAHA  226 (398)
T ss_dssp             ECSCHHHHHHTHHHHGGGGTHHHHHHHHHH-HTTCCTTCEEEEECC-SHHHHHHHHHH-HHTTCSEEEEEESCHHHHHHH
T ss_pred             ECCCCcchhhhcccccccccHHHHHHHHHH-HcCCCCCCEEEEECC-cHHHHHHHHHH-HHCCCCeEEEEcCCHHHHHHH
Confidence            9999999888    7889999999999994 789999999999996 99999999999 67899 899999999999999


Q ss_pred             HhcCCcEEEEcCCchhHHHHHHHHhCCCcccEEEECCCCc----------------cHHHHHHHhhccCceEEe
Q psy1959         204 RQKGAWAALTFTNEKSLVNKVLEVSGGKYANVVFEAVGGE----------------DKTDLIRQKGAWAALTFT  261 (296)
Q Consensus       204 ~~~g~~~~~~~~~~~~~~~~i~~~~~~~g~d~vld~~g~~----------------~~~~~~~~lg~~~g~~~~  261 (296)
                      +++|++ ++++++..++.+.+++.+++.++|++||++|++                .+..+++++ +++|++.+
T Consensus       227 ~~lGa~-~i~~~~~~~~~~~v~~~t~g~g~Dvvid~~G~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~G~iv~  298 (398)
T 1kol_A          227 KAQGFE-IADLSLDTPLHEQIAALLGEPEVDCAVDAVGFEARGHGHEGAKHEAPATVLNSLMQVT-RVAGKIGI  298 (398)
T ss_dssp             HHTTCE-EEETTSSSCHHHHHHHHHSSSCEEEEEECCCTTCBCSSTTGGGSBCTTHHHHHHHHHE-EEEEEEEE
T ss_pred             HHcCCc-EEccCCcchHHHHHHHHhCCCCCCEEEECCCCcccccccccccccchHHHHHHHHHHH-hcCCEEEE
Confidence            999996 788765234788899988878999999999985                588999999 77777643

>1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A*

Probab=100.00  E-value=1.2e-37  Score=285.02  Aligned_cols=245  Identities=21%  Similarity=0.216  Sum_probs=209.1

Q ss_pred             cceEEecCCCC-C----CCCCCCCCCCCCCCcEEEEeeeeecChhhHHHHcCCCCC-------CCCCCCcCCCceeEEEE
Q psy1959          13 SDLLLYNGSGD-A----KPTLPLVPGFEFSGTIIEKKMMTRINSSDLLLYNGSGDA-------KPTLPLVPGFEFSGTVI   80 (296)
Q Consensus        13 ~~~~~~~~~~~-~----~~~p~~~~~~~~~~evlvkv~~~~i~~~D~~~~~g~~~~-------~~~~p~~~G~e~~G~V~   80 (296)
                      |+++++++++. .    .|.|+|.++     ||+|||.+++||++|++++.|.++.       ...+|.++|||++|+|+
T Consensus         1 Mka~~~~~~g~~l~~~~~~~p~~~~~-----eVlVkv~a~gi~~~D~~~~~g~~~~~~~~~~~~~~~p~i~G~e~~G~V~   75 (347)
T 1jvb_A            1 MRAVRLVEIGKPLSLQEIGVPKPKGP-----QVLIKVEAAGVCHSDVHMRQGRFGNLRIVEDLGVKLPVTLGHEIAGKIE   75 (347)
T ss_dssp             CEEEEECSTTSCCEEEECCCCCCCTT-----CEEEEEEEEEECTHHHHHTTTEETTEETTTTTCCCSCEECCCEEEEEEE
T ss_pred             CeEEEEecCCCCeEEEEeeCCCCCCC-----eEEEEEEEEEecHHHHHHhcCCCcccccccccCCCCCccccccceEEEE
Confidence            67888887763 2    677888888     9999999999999999999886541       24679999999999999


Q ss_pred             EEccCCCCCCCCCCCCCCCCCCCEEEEecC-------------------------CCCCcccceEeeeC-CceEECCCCC
Q psy1959          81 EVADTKSSSTEEDDEEDVLQVGDKVLALNK-------------------------ELLHGFSDQCVVHT-NDVFKIPEKM  134 (296)
Q Consensus        81 ~v~~~~~~~~~~g~~v~~~~~Gd~V~~~~~-------------------------~~~g~~~~~~~v~~-~~~~~iP~~~  134 (296)
                      ++          |++|++|++||||+++..                         ...|+|+||+++|+ +.++++ +++
T Consensus        76 ~v----------G~~v~~~~vGdrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~~G~~~~G~~aey~~v~~~~~~~~i-~~~  144 (347)
T 1jvb_A           76 EV----------GDEVVGYSKGDLVAVNPWQGEGNCYYCRIGEEHLCDSPRWLGINFDGAYAEYVIVPHYKYMYKL-RRL  144 (347)
T ss_dssp             EE----------CTTCCSCCTTCEEEECCEECCSSSHHHHTTCGGGCSSCEEBTTTBCCSSBSEEEESCGGGEEEC-SSS
T ss_pred             EE----------CCCCCCCCCCCEEEeCCCCCCCCChhhhCcCcccCcccccccccCCCcceeEEEecCccceEEe-CCC
Confidence            99          999999999999976531                         13599999999999 999999 999


Q ss_pred             CHHHHhhhccHHHHHHHHHHHHcCCCCCcEEEEEcCCCcHHHHHHHHHHHhC-CCEEEEEeCCcchHHHHHhcCCcEEEE
Q psy1959         135 TFEHAASLADSYSTAQIVFSRHAKLKEKQTVLVTAAGGGLGLAAVDMATKIY-KAKVIGVCNSEDKTDLIRQKGAWAALT  213 (296)
Q Consensus       135 ~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vlI~Ga~g~vG~aa~~la~~~~-g~~Vi~~~~~~~~~~~~~~~g~~~~~~  213 (296)
                      +++++|++++++.|||+++. .+++++|++|+|+|++|++|++++|++ +.. |++|+++++++++.+.++++|++.+++
T Consensus       145 ~~~~aa~l~~~~~ta~~~l~-~~~~~~g~~vlV~Gagg~iG~~~~~~a-~~~~Ga~Vi~~~~~~~~~~~~~~~g~~~~~~  222 (347)
T 1jvb_A          145 NAVEAAPLTCSGITTYRAVR-KASLDPTKTLLVVGAGGGLGTMAVQIA-KAVSGATIIGVDVREEAVEAAKRAGADYVIN  222 (347)
T ss_dssp             CHHHHGGGGTHHHHHHHHHH-HTTCCTTCEEEEETTTSHHHHHHHHHH-HHHTCCEEEEEESSHHHHHHHHHHTCSEEEE
T ss_pred             CHHHcccchhhHHHHHHHHH-hcCCCCCCEEEEECCCccHHHHHHHHH-HHcCCCeEEEEcCCHHHHHHHHHhCCCEEec
Confidence            99999999999999999994 589999999999999779999999999 567 999999999999999999999999888


Q ss_pred             cCCchhHHHHHHHHhCCCcccEEEECCCCc-cHHHHHHHhhccCceEEee----------cccceeeeeEEeccc
Q psy1959         214 FTNEKSLVNKVLEVSGGKYANVVFEAVGGE-DKTDLIRQKGAWAALTFTN----------EKSLVNKVLEVSGGK  277 (296)
Q Consensus       214 ~~~~~~~~~~i~~~~~~~g~d~vld~~g~~-~~~~~~~~lg~~~g~~~~~----------~~~~~~k~~~i~g~~  277 (296)
                      +.+ .++.+.+.+.+...++|++||++|++ .++.+++++ +++|++..-          ...++.|++++.|+.
T Consensus       223 ~~~-~~~~~~~~~~~~~~~~d~vi~~~g~~~~~~~~~~~l-~~~G~iv~~g~~~~~~~~~~~~~~~~~~~i~g~~  295 (347)
T 1jvb_A          223 ASM-QDPLAEIRRITESKGVDAVIDLNNSEKTLSVYPKAL-AKQGKYVMVGLFGADLHYHAPLITLSEIQFVGSL  295 (347)
T ss_dssp             TTT-SCHHHHHHHHTTTSCEEEEEESCCCHHHHTTGGGGE-EEEEEEEECCSSCCCCCCCHHHHHHHTCEEEECC
T ss_pred             CCC-ccHHHHHHHHhcCCCceEEEECCCCHHHHHHHHHHH-hcCCEEEEECCCCCCCCCCHHHHHhCceEEEEEe
Confidence            877 67777788877523899999999995 899999999 777766432          123456788888765

>2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A*

Probab=100.00  E-value=3e-38  Score=290.22  Aligned_cols=236  Identities=17%  Similarity=0.175  Sum_probs=201.7

Q ss_pred             cceEEecCCCC-C----CCCCCCCCCCCCCCcEEEEeeeeecChhhHHHHcCCCCCCCCC---CCcCCCceeEEEEEEcc
Q psy1959          13 SDLLLYNGSGD-A----KPTLPLVPGFEFSGTIIEKKMMTRINSSDLLLYNGSGDAKPTL---PLVPGFEFSGTVIEVAD   84 (296)
Q Consensus        13 ~~~~~~~~~~~-~----~~~p~~~~~~~~~~evlvkv~~~~i~~~D~~~~~g~~~~~~~~---p~~~G~e~~G~V~~v~~   84 (296)
                      ||+++++++++ .    .|.|+|.++     ||||||.+++||++|++++.|.++. ..+   |.++|||++| |+++  
T Consensus         1 MkA~~~~~~~~~l~~~~~p~P~~~~~-----eVlVkv~a~gi~~~D~~~~~g~~~~-~~~~~~p~v~G~E~~G-V~~v--   71 (357)
T 2b5w_A            1 MKAIAVKRGEDRPVVIEKPRPEPESG-----EALVRTLRVGVCGTDHEVIAGGHGG-FPEGEDHLVLGHEAVG-VVVD--   71 (357)
T ss_dssp             CEEEEEETTCSSCEEEECCCCCCCTT-----EEEEEEEEEEECHHHHHHHHSCSTT-SCTTCSEEECCSEEEE-EEEE--
T ss_pred             CeEEEEeCCCCceEEEECCCCCCCcC-----EEEEEEeEEeechhcHHHHcCCCCC-CCCCCCCcccCceeEE-EEEE--
Confidence            68888888777 3    677888889     9999999999999999999987654 456   8999999999 9999  


Q ss_pred             CCCCCCCCCCCCCCCCCCCEEEEecC------------------------------CCCCcccceEeeeCCceEECCCCC
Q psy1959          85 TKSSSTEEDDEEDVLQVGDKVLALNK------------------------------ELLHGFSDQCVVHTNDVFKIPEKM  134 (296)
Q Consensus        85 ~~~~~~~~g~~v~~~~~Gd~V~~~~~------------------------------~~~g~~~~~~~v~~~~~~~iP~~~  134 (296)
                              |++ ++|++||||++...                              ...|+|+||+++|++.++++|+++
T Consensus        72 --------G~~-~~~~vGdrV~~~~~~~~~cg~C~~C~~g~~~~C~~~~~~~~g~~~~~G~~aey~~v~~~~~~~iP~~~  142 (357)
T 2b5w_A           72 --------PND-TELEEGDIVVPTVRRPPASGTNEYFERDQPDMAPDGMYFERGIVGAHGYMSEFFTSPEKYLVRIPRSQ  142 (357)
T ss_dssp             --------CTT-SSCCTTCEEEECSEECCTTCCCHHHHTTCGGGCCTTSCEEETTBEECCSCBSEEEEEGGGEEECCGGG
T ss_pred             --------CCC-CCCCCCCEEEECCcCCCCCCCChHHhCcCcccCCCCcccccCccCCCcceeeEEEEchHHeEECCCCc
Confidence                    988 88999999998521                              125999999999999999999999


Q ss_pred             CHHHHhhhccHHHHHHHHHHHHcCCCCC------cEEEEEcCCCcHHHHH-HHHH-HHhCCCE-EEEEeCCcc---hHHH
Q psy1959         135 TFEHAASLADSYSTAQIVFSRHAKLKEK------QTVLVTAAGGGLGLAA-VDMA-TKIYKAK-VIGVCNSED---KTDL  202 (296)
Q Consensus       135 ~~~~aa~l~~~~~ta~~~l~~~~~~~~g------~~vlI~Ga~g~vG~aa-~~la-~~~~g~~-Vi~~~~~~~---~~~~  202 (296)
                      + + +|+++.+++|||+++ +.+++++|      ++|+|+|+ |++|+++ +|+| + ..|++ |++++++++   |+++
T Consensus       143 ~-~-~aal~~~~~ta~~al-~~~~~~~g~~~~~~~~VlV~Ga-G~vG~~a~iqla~k-~~Ga~~Vi~~~~~~~~~~~~~~  217 (357)
T 2b5w_A          143 A-E-LGFLIEPISITEKAL-EHAYASRSAFDWDPSSAFVLGN-GSLGLLTLAMLKVD-DKGYENLYCLGRRDRPDPTIDI  217 (357)
T ss_dssp             S-T-TGGGHHHHHHHHHHH-HHHHHTTTTSCCCCCEEEEECC-SHHHHHHHHHHHHC-TTCCCEEEEEECCCSSCHHHHH
T ss_pred             c-h-hhhhhchHHHHHHHH-HhcCCCCCcccCCCCEEEEECC-CHHHHHHHHHHHHH-HcCCcEEEEEeCCcccHHHHHH
Confidence            9 5 456889999999999 67889999      99999999 9999999 9999 6 57996 999999999   9999


Q ss_pred             HHhcCCcEEEEcCCchhHHHHHHHHhCCCcccEEEECCCCc-cHHHHHHHhhccCceEEeec-----------ccc----
Q psy1959         203 IRQKGAWAALTFTNEKSLVNKVLEVSGGKYANVVFEAVGGE-DKTDLIRQKGAWAALTFTNE-----------KSL----  266 (296)
Q Consensus       203 ~~~~g~~~~~~~~~~~~~~~~i~~~~~~~g~d~vld~~g~~-~~~~~~~~lg~~~g~~~~~~-----------~~~----  266 (296)
                      ++++|++.+ ++++ .++.+ +++. ++ ++|++||++|++ .+..+++++ +++|++..-.           ..+    
T Consensus       218 ~~~lGa~~v-~~~~-~~~~~-i~~~-~g-g~Dvvid~~g~~~~~~~~~~~l-~~~G~iv~~g~~~~~~~~~~~~~~~~~~  291 (357)
T 2b5w_A          218 IEELDATYV-DSRQ-TPVED-VPDV-YE-QMDFIYEATGFPKHAIQSVQAL-APNGVGALLGVPSDWAFEVDAGAFHREM  291 (357)
T ss_dssp             HHHTTCEEE-ETTT-SCGGG-HHHH-SC-CEEEEEECSCCHHHHHHHHHHE-EEEEEEEECCCCCCCCCCCCHHHHHHHH
T ss_pred             HHHcCCccc-CCCc-cCHHH-HHHh-CC-CCCEEEECCCChHHHHHHHHHH-hcCCEEEEEeCCCCCCceecHHHHhHHH
Confidence            999999988 8876 56666 7777 55 999999999994 899999999 7777763321           134    


Q ss_pred             eeeeeEEeccc
Q psy1959         267 VNKVLEVSGGK  277 (296)
Q Consensus       267 ~~k~~~i~g~~  277 (296)
                      +.|++++.|++
T Consensus       292 ~~~~~~i~g~~  302 (357)
T 2b5w_A          292 VLHNKALVGSV  302 (357)
T ss_dssp             HHTTCEEEECC
T ss_pred             HhCCeEEEEec
Confidence            57888888875

>1xa0_A Putative NADPH dependent oxidoreductases; structural genomics, protein structure initiative, MCSG; HET: DTY; 2.80A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1

Probab=100.00  E-value=1.5e-38  Score=288.91  Aligned_cols=245  Identities=20%  Similarity=0.298  Sum_probs=200.9

Q ss_pred             CCcceEEecCCCC---C----CCCCCCCCCCCCCCcEEEEeeeeecChhhHHHHcCCCCCCCCCCCcCCCceeEEEEEEc
Q psy1959          11 NSSDLLLYNGSGD---A----KPTLPLVPGFEFSGTIIEKKMMTRINSSDLLLYNGSGDAKPTLPLVPGFEFSGTVIEVA   83 (296)
Q Consensus        11 ~~~~~~~~~~~~~---~----~~~p~~~~~~~~~~evlvkv~~~~i~~~D~~~~~g~~~~~~~~p~~~G~e~~G~V~~v~   83 (296)
                      .+||++++++++.   .    .|.|+|.++     ||+|||.+++||++|++.+.|.++....+|.++|||++|+|+++ 
T Consensus         2 ~~mka~~~~~~g~~~~l~~~~~~~p~~~~~-----eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~v~G~E~~G~V~~~-   75 (328)
T 1xa0_A            2 SAFQAFVVNKTETEFTAGVQTISMDDLPEG-----DVLVRVHYSSVNYKDGLASIPDGKIVKTYPFVPGIDLAGVVVSS-   75 (328)
T ss_dssp             CEEEEEEEEEETTEEEEEEEEEEGGGSCSC-----SEEEEEEEEECCHHHHHHTSGGGSSCCSSSBCCCSEEEEEEEEC-
T ss_pred             CcceEEEEecCCCcceeEEEeccCCCCCCC-----eEEEEEEEEecCHHHHHhhcCCCCCCCCCCcccCcceEEEEEec-
Confidence            3588888888762   2    577778889     99999999999999999998876544567999999999999998 


Q ss_pred             cCCCCCCCCCCCCCCCCCCCEEEEecC----CCCCcccceEeeeCCceEECCCCCCHHHHhhhccHHHHHHHHHH--HHc
Q psy1959          84 DTKSSSTEEDDEEDVLQVGDKVLALNK----ELLHGFSDQCVVHTNDVFKIPEKMTFEHAASLADSYSTAQIVFS--RHA  157 (296)
Q Consensus        84 ~~~~~~~~~g~~v~~~~~Gd~V~~~~~----~~~g~~~~~~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~l~--~~~  157 (296)
                               |  +++|++||||++...    ...|+|+||+++|++.++++|+++++++||+++.++.|||.+++  +..
T Consensus        76 ---------~--v~~~~vGdrV~~~~~~~g~~~~G~~aey~~v~~~~~~~~P~~l~~~~aa~~~~~~~ta~~~l~~~~~~  144 (328)
T 1xa0_A           76 ---------Q--HPRFREGDEVIATGYEIGVTHFGGYSEYARLHGEWLVPLPKGLTLKEAMAIGTAGFTAALSIHRLEEH  144 (328)
T ss_dssp             ---------C--SSSCCTTCEEEEESTTBTTTBCCSSBSEEEECGGGCEECCTTCCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             ---------C--CCCCCCCCEEEEccccCCCCCCccceeEEEechHHeEECCCCCCHHHhhhhhhhHHHHHHHHHHHhhc
Confidence                     5  567999999998631    22599999999999999999999999999999999999998875  346


Q ss_pred             CCCCCc-EEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCcEEEEcCCchhHHHHHHHHhCCCcccEE
Q psy1959         158 KLKEKQ-TVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNKVLEVSGGKYANVV  236 (296)
Q Consensus       158 ~~~~g~-~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~g~d~v  236 (296)
                      ++++|+ +|+|+|++|++|++++|+| +..|++|++++++++++++++++|++.++++++ .+ .+.+++.. +.++|++
T Consensus       145 ~~~~g~~~VlV~Ga~G~vG~~~~q~a-~~~Ga~vi~~~~~~~~~~~~~~lGa~~~i~~~~-~~-~~~~~~~~-~~~~d~v  220 (328)
T 1xa0_A          145 GLTPERGPVLVTGATGGVGSLAVSML-AKRGYTVEASTGKAAEHDYLRVLGAKEVLARED-VM-AERIRPLD-KQRWAAA  220 (328)
T ss_dssp             TCCGGGCCEEESSTTSHHHHHHHHHH-HHTTCCEEEEESCTTCHHHHHHTTCSEEEECC-----------CC-SCCEEEE
T ss_pred             CCCCCCceEEEecCCCHHHHHHHHHH-HHCCCEEEEEECCHHHHHHHHHcCCcEEEecCC-cH-HHHHHHhc-CCcccEE
Confidence            889997 9999999999999999999 678999999999999999999999999988865 32 33344444 3489999


Q ss_pred             EECCCCccHHHHHHHhhccCceEEeec-----------ccceeeeeEEeccc
Q psy1959         237 FEAVGGEDKTDLIRQKGAWAALTFTNE-----------KSLVNKVLEVSGGK  277 (296)
Q Consensus       237 ld~~g~~~~~~~~~~lg~~~g~~~~~~-----------~~~~~k~~~i~g~~  277 (296)
                      ||++|++.+..+++++ +++|++..-.           ..++.|++++.|+.
T Consensus       221 id~~g~~~~~~~~~~l-~~~G~~v~~G~~~~~~~~~~~~~~~~~~~~i~g~~  271 (328)
T 1xa0_A          221 VDPVGGRTLATVLSRM-RYGGAVAVSGLTGGAEVPTTVHPFILRGVSLLGID  271 (328)
T ss_dssp             EECSTTTTHHHHHHTE-EEEEEEEECSCCSSSCCCCCSHHHHHTTCEEEECC
T ss_pred             EECCcHHHHHHHHHhh-ccCCEEEEEeecCCCCCCCchhhhhhcCceEEEEe
Confidence            9999999999999999 7777764321           13456888888864

>3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima}

Probab=100.00  E-value=1.1e-37  Score=291.02  Aligned_cols=235  Identities=24%  Similarity=0.254  Sum_probs=200.3

Q ss_pred             CCCCC-CCCCCCCCCcEEEEeeeeecChhhHHHHcCCC------CCCCCCCCcCCCceeEEEEEEccCCCCCCCCCCCC-
Q psy1959          25 KPTLP-LVPGFEFSGTIIEKKMMTRINSSDLLLYNGSG------DAKPTLPLVPGFEFSGTVIEVADTKSSSTEEDDEE-   96 (296)
Q Consensus        25 ~~~p~-~~~~~~~~~evlvkv~~~~i~~~D~~~~~g~~------~~~~~~p~~~G~e~~G~V~~v~~~~~~~~~~g~~v-   96 (296)
                      .|.|. |.++     ||||||.+++||++|++.+.|..      +....+|.++|||++|+|+++          |++| 
T Consensus        47 ~~~P~~~~~~-----eVlVkv~a~gi~~~D~~~~~g~~~~~~~~~~~~~~P~i~G~E~~G~V~~v----------G~~v~  111 (404)
T 3ip1_A           47 VPEPRIEKPT-----EIIIKVKACGICGSDVHMAQTDEEGYILYPGLTGFPVTLGHEFSGVVVEA----------GPEAI  111 (404)
T ss_dssp             ECCCCCCSTT-----EEEEEEEEEECCHHHHHHHCBCTTSBBSCCSCBCSSEECCCEEEEEEEEE----------CTTCE
T ss_pred             cCCCCCCCcC-----EEEEEEeEeeeCHHHHHHhcCCCCccccccccCCCCcccCccceEEEEEE----------CCCcc
Confidence            67788 8889     99999999999999999998642      223467999999999999999          9999 


Q ss_pred             -----CCCCCCCEEEEec-------------------------CCCCCcccceEeeeCCceEECCCCCC------HHHHh
Q psy1959          97 -----DVLQVGDKVLALN-------------------------KELLHGFSDQCVVHTNDVFKIPEKMT------FEHAA  140 (296)
Q Consensus        97 -----~~~~~Gd~V~~~~-------------------------~~~~g~~~~~~~v~~~~~~~iP~~~~------~~~aa  140 (296)
                           ++|++||||++..                         ....|+|+||+++|++.++++|++++      ..++|
T Consensus       112 ~~~~~~~~~vGdrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~~g~~~~G~~aey~~v~~~~~~~iP~~~~~~~~~~~~~aa  191 (404)
T 3ip1_A          112 NRRTNKRFEIGEPVCAEEMLWCGHCRPCAEGFPNHCENLNELGFNVDGAFAEYVKVDAKYAWSLRELEGVYEGDRLFLAG  191 (404)
T ss_dssp             ETTTTEECCTTCEEEECSEECCSCSHHHHTTCGGGCTTCEEBTTTBCCSSBSEEEEEGGGEEECGGGBTTBCTHHHHHHH
T ss_pred             ccccCCCCCCCCEEEECCccCCCCCHHHHCcCcccCccccccCCCCCCCCcceEEechHHeEeccccccccccccchhHH
Confidence                 8899999999842                         12369999999999999999999885      56688


Q ss_pred             hhccHHHHHHHHHHHH-cCCCCCcEEEEEcCCCcHHHHHHHHHHHhCCC-EEEEEeCCcchHHHHHhcCCcEEEEcCCch
Q psy1959         141 SLADSYSTAQIVFSRH-AKLKEKQTVLVTAAGGGLGLAAVDMATKIYKA-KVIGVCNSEDKTDLIRQKGAWAALTFTNEK  218 (296)
Q Consensus       141 ~l~~~~~ta~~~l~~~-~~~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~-~Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~  218 (296)
                      +++.+++|||+++... +++++|++|+|+|+ |++|++++|+| +..|+ +|++++++++|+++++++|++.++++++ .
T Consensus       192 ~l~~~~~ta~~al~~~~~~~~~g~~VlV~Ga-G~vG~~aiqla-k~~Ga~~Vi~~~~~~~~~~~~~~lGa~~vi~~~~-~  268 (404)
T 3ip1_A          192 SLVEPTSVAYNAVIVRGGGIRPGDNVVILGG-GPIGLAAVAIL-KHAGASKVILSEPSEVRRNLAKELGADHVIDPTK-E  268 (404)
T ss_dssp             HTHHHHHHHHHHHTTTSCCCCTTCEEEEECC-SHHHHHHHHHH-HHTTCSEEEEECSCHHHHHHHHHHTCSEEECTTT-S
T ss_pred             hhhhHHHHHHHHHHHhccCCCCCCEEEEECC-CHHHHHHHHHH-HHcCCCEEEEECCCHHHHHHHHHcCCCEEEcCCC-C
Confidence            8999999999998655 48999999999998 99999999999 67899 9999999999999999999999999987 7


Q ss_pred             hHHHHHHHHhCCCcccEEEECCCCc--cHHHHHHHhh---ccCceE----------EeecccceeeeeEEeccc
Q psy1959         219 SLVNKVLEVSGGKYANVVFEAVGGE--DKTDLIRQKG---AWAALT----------FTNEKSLVNKVLEVSGGK  277 (296)
Q Consensus       219 ~~~~~i~~~~~~~g~d~vld~~g~~--~~~~~~~~lg---~~~g~~----------~~~~~~~~~k~~~i~g~~  277 (296)
                      ++.+.+++.++++++|++||++|++  .+..+++++-   +++|++          .++...++.|++++.|++
T Consensus       269 ~~~~~i~~~t~g~g~D~vid~~g~~~~~~~~~~~~l~~~~~~~G~iv~~G~~~~~~~~~~~~~~~~~~~i~g~~  342 (404)
T 3ip1_A          269 NFVEAVLDYTNGLGAKLFLEATGVPQLVWPQIEEVIWRARGINATVAIVARADAKIPLTGEVFQVRRAQIVGSQ  342 (404)
T ss_dssp             CHHHHHHHHTTTCCCSEEEECSSCHHHHHHHHHHHHHHCSCCCCEEEECSCCCSCEEECHHHHHHTTCEEEECC
T ss_pred             CHHHHHHHHhCCCCCCEEEECCCCcHHHHHHHHHHHHhccCCCcEEEEeCCCCCCCcccHHHHhccceEEEEec
Confidence            8999999999888999999999996  5666666650   444444          334456677888888876

>3iup_A Putative NADPH:quinone oxidoreductase; YP_296108.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE NDP; 1.70A {Ralstonia eutropha}

Probab=100.00  E-value=9e-39  Score=296.05  Aligned_cols=246  Identities=19%  Similarity=0.182  Sum_probs=206.9

Q ss_pred             CcceEEecCCCC-C----CCCCCCCCCCCCCCcEEEEeeeeecChhhHHHHcCCCC------------------------
Q psy1959          12 SSDLLLYNGSGD-A----KPTLPLVPGFEFSGTIIEKKMMTRINSSDLLLYNGSGD------------------------   62 (296)
Q Consensus        12 ~~~~~~~~~~~~-~----~~~p~~~~~~~~~~evlvkv~~~~i~~~D~~~~~g~~~------------------------   62 (296)
                      .|+++++..... .    .|.|+|.++     ||||||.+++||++|++.+.|.++                        
T Consensus         7 ~mka~v~~~~~~~l~~~~~~~P~~~~~-----eVlVkv~a~gi~~~D~~~~~g~~~~~~~~~~g~~~~p~~~~~~p~~~~   81 (379)
T 3iup_A            7 QLRSRIKSSGELELSLDSIDTPHPGPD-----EVLIRIEASPLNPSDLGLLFGAADMSTAKASGTAERPIVTARVPEGAM   81 (379)
T ss_dssp             EEEEEECTTSEEEEEEEEEECCCCCTT-----EEEEEEEEEECCHHHHHHHHTTCEEEEEEEEECSSSEEEEEECCHHHH
T ss_pred             hHHHHHhcCCCCceEEEeccCCCCCCC-----EEEEEEEEEecCHHHHHHhcCCccccccccccccccccccccCccccc
Confidence            466666643221 1    678888999     999999999999999999988631                        


Q ss_pred             ----CCCCCCCcCCCceeEEEEEEccCCCCCCCCCCCC-CCCCCCCEEEEecCCCCCcccceEeeeCCceEECCCCCCHH
Q psy1959          63 ----AKPTLPLVPGFEFSGTVIEVADTKSSSTEEDDEE-DVLQVGDKVLALNKELLHGFSDQCVVHTNDVFKIPEKMTFE  137 (296)
Q Consensus        63 ----~~~~~p~~~G~e~~G~V~~v~~~~~~~~~~g~~v-~~~~~Gd~V~~~~~~~~g~~~~~~~v~~~~~~~iP~~~~~~  137 (296)
                          ....+|.++|||++|+|+++          |++| ++|++||||++...   |+|+||+++|++.++++|++++++
T Consensus        82 ~~~~~~~~~p~i~G~e~~G~V~~v----------G~~v~~~~~vGdrV~~~~~---G~~aey~~v~~~~~~~iP~~~~~~  148 (379)
T 3iup_A           82 RSMAGRLDASMPVGNEGAGVVVEA----------GSSPAAQALMGKTVAAIGG---AMYSQYRCIPADQCLVLPEGATPA  148 (379)
T ss_dssp             HHHGGGTTEEEECCSCEEEEEEEE----------CSSHHHHTTTTCEEEECCS---CCSBSEEEEEGGGEEECCTTCCHH
T ss_pred             cccccccCCCccceeeeEEEEEEe----------CCCcccCCCCCCEEEecCC---CcceeEEEeCHHHeEECCCCCCHH
Confidence                02356899999999999999          9999 88999999999865   999999999999999999999999


Q ss_pred             HHhhhccHHHHHHHHHHHHcCCCCCcEEEEEc-CCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCcEEEEcCC
Q psy1959         138 HAASLADSYSTAQIVFSRHAKLKEKQTVLVTA-AGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTN  216 (296)
Q Consensus       138 ~aa~l~~~~~ta~~~l~~~~~~~~g~~vlI~G-a~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~~~~~~~~  216 (296)
                      +||+++..+.|||+++.. .. ++|++|+|+| ++|++|++++|+| +..|++|++++++++|+++++++|++.++++++
T Consensus       149 ~aa~l~~~~~ta~~~~~~-~~-~~g~~vlV~gag~G~vG~~a~q~a-~~~Ga~Vi~~~~~~~~~~~~~~lGa~~~~~~~~  225 (379)
T 3iup_A          149 DGASSFVNPLTALGMVET-MR-LEGHSALVHTAAASNLGQMLNQIC-LKDGIKLVNIVRKQEQADLLKAQGAVHVCNAAS  225 (379)
T ss_dssp             HHTTSSHHHHHHHHHHHH-HH-HTTCSCEEESSTTSHHHHHHHHHH-HHHTCCEEEEESSHHHHHHHHHTTCSCEEETTS
T ss_pred             HHHhhhhhHHHHHHHHHH-hc-cCCCEEEEECCCCCHHHHHHHHHH-HHCCCEEEEEECCHHHHHHHHhCCCcEEEeCCC
Confidence            999999999999988854 44 8999999995 6799999999999 668999999999999999999999999999987


Q ss_pred             chhHHHHHHHHhCCCcccEEEECCCC-ccHHHHHHHhhc----cC-----------ceE---------Eeecccceeeee
Q psy1959         217 EKSLVNKVLEVSGGKYANVVFEAVGG-EDKTDLIRQKGA----WA-----------ALT---------FTNEKSLVNKVL  271 (296)
Q Consensus       217 ~~~~~~~i~~~~~~~g~d~vld~~g~-~~~~~~~~~lg~----~~-----------g~~---------~~~~~~~~~k~~  271 (296)
                       .++.+.+++.++++++|++|||+|+ .....+++++..    ++           |++         .++...++.+++
T Consensus       226 -~~~~~~v~~~t~~~g~d~v~d~~g~~~~~~~~~~~l~~~~~r~~G~~~~~G~~~~g~iv~~G~~~~~~~~~~~~~~~~~  304 (379)
T 3iup_A          226 -PTFMQDLTEALVSTGATIAFDATGGGKLGGQILTCMEAALNKSAREYSRYGSTTHKQVYLYGGLDTSPTEFNRNFGMAW  304 (379)
T ss_dssp             -TTHHHHHHHHHHHHCCCEEEESCEEESHHHHHHHHHHHHHHTTCCSCCTTCCCSCEEEEECCCSEEEEEEECCCSCSCE
T ss_pred             -hHHHHHHHHHhcCCCceEEEECCCchhhHHHHHHhcchhhhccccceeecccccCceEEEecCCCCCccccccccccce
Confidence             7899999999887899999999998 466888888821    21           222         233345677888


Q ss_pred             EEeccccc
Q psy1959         272 EVSGGKYA  279 (296)
Q Consensus       272 ~i~g~~~~  279 (296)
                      ++.|+...
T Consensus       305 ~i~g~~~~  312 (379)
T 3iup_A          305 GMGGWLLF  312 (379)
T ss_dssp             EEEECCHH
T ss_pred             EEEEEEee
Confidence            88887643

>2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A*

Probab=100.00  E-value=1.6e-37  Score=285.48  Aligned_cols=240  Identities=23%  Similarity=0.205  Sum_probs=201.7

Q ss_pred             CcceEEecCCCCC-----CCCCCCCCCCCCCCcEEEEeeeeecChhhHHHHcCCCCCCCCCCCcCCCceeEEEEEEccCC
Q psy1959          12 SSDLLLYNGSGDA-----KPTLPLVPGFEFSGTIIEKKMMTRINSSDLLLYNGSGDAKPTLPLVPGFEFSGTVIEVADTK   86 (296)
Q Consensus        12 ~~~~~~~~~~~~~-----~~~p~~~~~~~~~~evlvkv~~~~i~~~D~~~~~g~~~~~~~~p~~~G~e~~G~V~~v~~~~   86 (296)
                      +|+++++.++.+.     .|.|+|.++     ||+|||.+++||++|++.+.|.++. ..+|.++|||++|+|+++    
T Consensus         9 ~~~a~~~~~~~~~l~~~~~~~p~~~~~-----eVlVkv~a~gi~~~D~~~~~g~~~~-~~~P~v~GhE~~G~V~~v----   78 (357)
T 2cf5_A            9 KTTGWAARDPSGILSPYTYTLRETGPE-----DVNIRIICCGICHTDLHQTKNDLGM-SNYPMVPGHEVVGEVVEV----   78 (357)
T ss_dssp             EEEEEEECSTTCCEEEEEEECCCCCTT-----EEEEEEEEEEECHHHHHHHTCTTTC-CCSSBCCCCEEEEEEEEE----
T ss_pred             eeEEEEEccCCCCcEEEEecCCCCCCC-----EEEEEEEEEeecchhhhhhcCCCCC-CCCCeecCcceeEEEEEE----
Confidence            4566666665433     677888899     9999999999999999999987653 467999999999999999    


Q ss_pred             CCCCCCCCCCCCCCCCCEEEEec---------------------------------CCCCCcccceEeeeCCceEECCCC
Q psy1959          87 SSSTEEDDEEDVLQVGDKVLALN---------------------------------KELLHGFSDQCVVHTNDVFKIPEK  133 (296)
Q Consensus        87 ~~~~~~g~~v~~~~~Gd~V~~~~---------------------------------~~~~g~~~~~~~v~~~~~~~iP~~  133 (296)
                            |++|++|++||||+...                                 ....|+|+||+++|++.++++|++
T Consensus        79 ------G~~v~~~~vGdrV~~~~~~~~Cg~C~~c~~g~~~~C~~~~~~~~~~~~~g~~~~G~~aey~~v~~~~~~~~P~~  152 (357)
T 2cf5_A           79 ------GSDVSKFTVGDIVGVGCLVGCCGGCSPCERDLEQYCPKKIWSYNDVYINGQPTQGGFAKATVVHQKFVVKIPEG  152 (357)
T ss_dssp             ------CSSCCSCCTTCEEEECSEEECCSSSHHHHTTCGGGCTTCEETTTSBCTTSCBCCCSSBSCEEEEGGGEEECCSS
T ss_pred             ------CCCCCCCCCCCEEEEcCCCCCCCCChHHhCcCcccCCCccccccccccCCCCCCCccccEEEechhhEEECcCC
Confidence                  99999999999998521                                 013699999999999999999999


Q ss_pred             CCHHHHhhhccHHHHHHHHHHHHcCCC-CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHH-hcCCcEE
Q psy1959         134 MTFEHAASLADSYSTAQIVFSRHAKLK-EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIR-QKGAWAA  211 (296)
Q Consensus       134 ~~~~~aa~l~~~~~ta~~~l~~~~~~~-~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~-~~g~~~~  211 (296)
                      ++++++|+++.++.|||+++. ..+++ +|++|+|+|+ |++|++++|+| +..|++|+++++++++++.++ ++|++.+
T Consensus       153 ls~~~aa~l~~~~~ta~~~l~-~~~~~~~g~~VlV~Ga-G~vG~~a~qla-k~~Ga~Vi~~~~~~~~~~~~~~~lGa~~v  229 (357)
T 2cf5_A          153 MAVEQAAPLLCAGVTVYSPLS-HFGLKQPGLRGGILGL-GGVGHMGVKIA-KAMGHHVTVISSSNKKREEALQDLGADDY  229 (357)
T ss_dssp             CCHHHHTGGGTHHHHHHHHHH-HTSTTSTTCEEEEECC-SHHHHHHHHHH-HHHTCEEEEEESSTTHHHHHHTTSCCSCE
T ss_pred             CCHHHhhhhhhhHHHHHHHHH-hcCCCCCCCEEEEECC-CHHHHHHHHHH-HHCCCeEEEEeCChHHHHHHHHHcCCcee
Confidence            999999999999999999994 57888 9999999996 99999999999 668999999999999999988 8999999


Q ss_pred             EEcCCchhHHHHHHHHhCCCcccEEEECCCC-ccHHHHHHHhhccCceEEeecc-----c-----ceeeeeEEeccc
Q psy1959         212 LTFTNEKSLVNKVLEVSGGKYANVVFEAVGG-EDKTDLIRQKGAWAALTFTNEK-----S-----LVNKVLEVSGGK  277 (296)
Q Consensus       212 ~~~~~~~~~~~~i~~~~~~~g~d~vld~~g~-~~~~~~~~~lg~~~g~~~~~~~-----~-----~~~k~~~i~g~~  277 (296)
                      +++++ .   +.+.+.+  .++|++||++|. ..++.+++++ +++|++..-..     .     ++.|++++.|++
T Consensus       230 i~~~~-~---~~~~~~~--~g~D~vid~~g~~~~~~~~~~~l-~~~G~iv~~G~~~~~~~~~~~~~~~~~~~i~g~~  299 (357)
T 2cf5_A          230 VIGSD-Q---AKMSELA--DSLDYVIDTVPVHHALEPYLSLL-KLDGKLILMGVINNPLQFLTPLLMLGRKVITGSF  299 (357)
T ss_dssp             EETTC-H---HHHHHST--TTEEEEEECCCSCCCSHHHHTTE-EEEEEEEECSCCSSCCCCCHHHHHHHTCEEEECC
T ss_pred             ecccc-H---HHHHHhc--CCCCEEEECCCChHHHHHHHHHh-ccCCEEEEeCCCCCCccccCHHHHhCccEEEEEc
Confidence            98865 3   3445554  389999999998 4899999999 77777633210     1     566888888876

>1tt7_A YHFP; alcohol dehydrogenase, Zn-dependent, NAD, structural genomics, protein structure initiative, PSI; 2.70A {Bacillus subtilis} SCOP: b.35.1.2 c.2.1.1 PDB: 1y9e_A*

Probab=100.00  E-value=2.1e-38  Score=288.09  Aligned_cols=245  Identities=20%  Similarity=0.258  Sum_probs=202.9

Q ss_pred             CCcceEEecCCC---CC----CCCCCCCCCCCCCCcEEEEeeeeecChhhHHHHcCCCCCCCCCCCcCCCceeEEEEEEc
Q psy1959          11 NSSDLLLYNGSG---DA----KPTLPLVPGFEFSGTIIEKKMMTRINSSDLLLYNGSGDAKPTLPLVPGFEFSGTVIEVA   83 (296)
Q Consensus        11 ~~~~~~~~~~~~---~~----~~~p~~~~~~~~~~evlvkv~~~~i~~~D~~~~~g~~~~~~~~p~~~G~e~~G~V~~v~   83 (296)
                      .+|+++++++++   ..    .|.|+|.++     ||+|||.+++||++|++.+.|.++....+|.++|||++|+|+++ 
T Consensus         3 ~~mka~~~~~~g~~~~l~~~~~~~p~~~~~-----eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~i~G~E~~G~V~~~-   76 (330)
T 1tt7_A            3 TLFQALQAEKNADDVSVHVKTISTEDLPKD-----GVLIKVAYSGINYKDGLAGKAGGNIVREYPLILGIDAAGTVVSS-   76 (330)
T ss_dssp             CEEEEEEECCGGGSCCCEEEEEESSSSCSS-----SEEEEECCEEECHHHHHHTSTTCTTCSSCSEECCSEEEEEEEEC-
T ss_pred             CcceEEEEecCCCCcceeEeecCCCCCCCC-----EEEEEEEEEecCHHHHhhhcCCCCCcCCCCccccceEEEEEEEc-
Confidence            458999999876   22    577788888     99999999999999999999876554567999999999999998 


Q ss_pred             cCCCCCCCCCCCCCCCCCCCEEEEecC----CCCCcccceEeeeCCceEECCCCCCHHHHhhhccHHHHHHHHHH--HHc
Q psy1959          84 DTKSSSTEEDDEEDVLQVGDKVLALNK----ELLHGFSDQCVVHTNDVFKIPEKMTFEHAASLADSYSTAQIVFS--RHA  157 (296)
Q Consensus        84 ~~~~~~~~~g~~v~~~~~Gd~V~~~~~----~~~g~~~~~~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~l~--~~~  157 (296)
                               |  +++|++||||++...    ...|+|+||+++|++.++++|+++++++||+++.++.|||.+++  +..
T Consensus        77 ---------~--v~~~~vGdrV~~~~~~~g~~~~G~~aey~~v~~~~~~~iP~~l~~~~aa~l~~~~~ta~~~l~~~~~~  145 (330)
T 1tt7_A           77 ---------N--DPRFAEGDEVIATSYELGVSRDGGLSEYASVPGDWLVPLPQNLSLKEAMVYGTAGFTAALSVHRLEQN  145 (330)
T ss_dssp             ---------S--STTCCTTCEEEEESTTBTTTBCCSSBSSEEECGGGEEECCTTCCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             ---------C--CCCCCCCCEEEEcccccCCCCCccceeEEEecHHHeEECCCCCCHHHHhhccchHHHHHHHHHHHHhc
Confidence                     5  467999999998632    23599999999999999999999999999999999999998875  346


Q ss_pred             CCCCCc-EEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCcEEEEcCCchhHHHHHHHHhCCCcccEE
Q psy1959         158 KLKEKQ-TVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNKVLEVSGGKYANVV  236 (296)
Q Consensus       158 ~~~~g~-~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~g~d~v  236 (296)
                      ++++|+ +|+|+|++|++|++++|+| +..|++|++++++++++++++++|++.++++++ .+ .+.+++.+ +.++|++
T Consensus       146 ~~~~g~~~VlV~Ga~G~vG~~~~q~a-~~~Ga~vi~~~~~~~~~~~~~~lGa~~v~~~~~-~~-~~~~~~~~-~~~~d~v  221 (330)
T 1tt7_A          146 GLSPEKGSVLVTGATGGVGGIAVSML-NKRGYDVVASTGNREAADYLKQLGASEVISRED-VY-DGTLKALS-KQQWQGA  221 (330)
T ss_dssp             TCCGGGCCEEEESTTSHHHHHHHHHH-HHHTCCEEEEESSSSTHHHHHHHTCSEEEEHHH-HC-SSCCCSSC-CCCEEEE
T ss_pred             CcCCCCceEEEECCCCHHHHHHHHHH-HHCCCEEEEEeCCHHHHHHHHHcCCcEEEECCC-ch-HHHHHHhh-cCCccEE
Confidence            789997 9999999999999999999 568999999999999999999999999887643 11 11122333 3489999


Q ss_pred             EECCCCccHHHHHHHhhccCceEEee-----------cccceeeeeEEeccc
Q psy1959         237 FEAVGGEDKTDLIRQKGAWAALTFTN-----------EKSLVNKVLEVSGGK  277 (296)
Q Consensus       237 ld~~g~~~~~~~~~~lg~~~g~~~~~-----------~~~~~~k~~~i~g~~  277 (296)
                      |||+|++.+..+++++ +++|++..-           ...++.|++++.|++
T Consensus       222 id~~g~~~~~~~~~~l-~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~i~g~~  272 (330)
T 1tt7_A          222 VDPVGGKQLASLLSKI-QYGGSVAVSGLTGGGEVPATVYPFILRGVSLLGID  272 (330)
T ss_dssp             EESCCTHHHHHHHTTE-EEEEEEEECCCSSCSCEEECSHHHHTSCCEEEECC
T ss_pred             EECCcHHHHHHHHHhh-cCCCEEEEEecCCCCccCcchHHHHhcCeEEEEEe
Confidence            9999999899999999 777766321           123457888888874

>1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A*

Probab=100.00  E-value=9.5e-37  Score=281.19  Aligned_cols=227  Identities=22%  Similarity=0.219  Sum_probs=194.1

Q ss_pred             CCCCCCCCCCCCCCcEEEEeeeeecChhhHHHHcCCCCCCCCCCCcCCCceeEEEEEEccCCCCCCCCCCCCCCCCCCCE
Q psy1959          25 KPTLPLVPGFEFSGTIIEKKMMTRINSSDLLLYNGSGDAKPTLPLVPGFEFSGTVIEVADTKSSSTEEDDEEDVLQVGDK  104 (296)
Q Consensus        25 ~~~p~~~~~~~~~~evlvkv~~~~i~~~D~~~~~g~~~~~~~~p~~~G~e~~G~V~~v~~~~~~~~~~g~~v~~~~~Gd~  104 (296)
                      .|.|+|.++     ||+|||.+++||++|++.+.|.++. ..+|.++|||++|+|+++          |++|++|++|||
T Consensus        34 ~~~p~~~~~-----eVlVkv~a~gi~~~D~~~~~g~~~~-~~~P~v~GhE~~G~V~~v----------G~~V~~~~vGDr   97 (366)
T 1yqd_A           34 FSRRATGEE-----DVRFKVLYCGVCHSDLHSIKNDWGF-SMYPLVPGHEIVGEVTEV----------GSKVKKVNVGDK   97 (366)
T ss_dssp             EEECCCCTT-----EEEEEEEEEEECHHHHHHHHTSSSC-CCSSBCCCCCEEEEEEEE----------CTTCCSCCTTCE
T ss_pred             ccCCCCCCC-----eEEEEEEEEeechhhHHHHcCCCCC-CCCCEecccceEEEEEEE----------CCCCCcCCCCCE
Confidence            677888889     9999999999999999999987653 457999999999999999          999999999999


Q ss_pred             EEEec---------------------------------CCCCCcccceEeeeCCceEECCCCCCHHHHhhhccHHHHHHH
Q psy1959         105 VLALN---------------------------------KELLHGFSDQCVVHTNDVFKIPEKMTFEHAASLADSYSTAQI  151 (296)
Q Consensus       105 V~~~~---------------------------------~~~~g~~~~~~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~  151 (296)
                      |+...                                 ....|+|+||+++|++.++++|++++++++|+++.++.|||+
T Consensus        98 V~~~~~~~~Cg~C~~c~~g~~~~C~~~~~~~~~~~~~g~~~~G~~aey~~v~~~~~~~~P~~ls~~~aa~l~~~~~ta~~  177 (366)
T 1yqd_A           98 VGVGCLVGACHSCESCANDLENYCPKMILTYASIYHDGTITYGGYSNHMVANERYIIRFPDNMPLDGGAPLLCAGITVYS  177 (366)
T ss_dssp             EEECSEEECCSSSHHHHTTCGGGCTTCEESSSSBCTTSCBCCCSSBSEEEEEGGGCEECCTTSCTTTTGGGGTHHHHHHH
T ss_pred             EEEcCCcCCCCCChhhhCcCcccCCcccccccccccCCCcCCCccccEEEEchhhEEECCCCCCHHHhhhhhhhHHHHHH
Confidence            98521                                 013599999999999999999999999999999999999999


Q ss_pred             HHHHHcCCC-CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHH-hcCCcEEEEcCCchhHHHHHHHHhC
Q psy1959         152 VFSRHAKLK-EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIR-QKGAWAALTFTNEKSLVNKVLEVSG  229 (296)
Q Consensus       152 ~l~~~~~~~-~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~i~~~~~  229 (296)
                      ++. ..+++ +|++|+|+|+ |++|++++|+| +..|++|+++++++++++.++ ++|++.++++++ .   +.+.+.+ 
T Consensus       178 al~-~~~~~~~g~~VlV~Ga-G~vG~~~~q~a-~~~Ga~Vi~~~~~~~~~~~~~~~lGa~~v~~~~~-~---~~~~~~~-  249 (366)
T 1yqd_A          178 PLK-YFGLDEPGKHIGIVGL-GGLGHVAVKFA-KAFGSKVTVISTSPSKKEEALKNFGADSFLVSRD-Q---EQMQAAA-  249 (366)
T ss_dssp             HHH-HTTCCCTTCEEEEECC-SHHHHHHHHHH-HHTTCEEEEEESCGGGHHHHHHTSCCSEEEETTC-H---HHHHHTT-
T ss_pred             HHH-hcCcCCCCCEEEEECC-CHHHHHHHHHH-HHCCCEEEEEeCCHHHHHHHHHhcCCceEEeccC-H---HHHHHhh-
Confidence            995 56788 9999999996 99999999999 678999999999999999887 899999998876 3   3455554 


Q ss_pred             CCcccEEEECCCC-ccHHHHHHHhhccCceEEe----------ecccceeeeeEEeccc
Q psy1959         230 GKYANVVFEAVGG-EDKTDLIRQKGAWAALTFT----------NEKSLVNKVLEVSGGK  277 (296)
Q Consensus       230 ~~g~d~vld~~g~-~~~~~~~~~lg~~~g~~~~----------~~~~~~~k~~~i~g~~  277 (296)
                       .++|++||++|. ..+..+++++ +++|++..          +...++.|++++.|++
T Consensus       250 -~~~D~vid~~g~~~~~~~~~~~l-~~~G~iv~~g~~~~~~~~~~~~~~~~~~~i~g~~  306 (366)
T 1yqd_A          250 -GTLDGIIDTVSAVHPLLPLFGLL-KSHGKLILVGAPEKPLELPAFSLIAGRKIVAGSG  306 (366)
T ss_dssp             -TCEEEEEECCSSCCCSHHHHHHE-EEEEEEEECCCCSSCEEECHHHHHTTTCEEEECC
T ss_pred             -CCCCEEEECCCcHHHHHHHHHHH-hcCCEEEEEccCCCCCCcCHHHHHhCCcEEEEec
Confidence             389999999998 4789999999 77776632          2234567788888875

>4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A*

Probab=100.00  E-value=7e-37  Score=278.71  Aligned_cols=241  Identities=19%  Similarity=0.208  Sum_probs=206.8

Q ss_pred             CCcceEEecC-------CCCC----CCCCCCCCCCCCCCcEEEEeeeeecChhhHHHHcCCCCCCCCCCCcCCCc----e
Q psy1959          11 NSSDLLLYNG-------SGDA----KPTLPLVPGFEFSGTIIEKKMMTRINSSDLLLYNGSGDAKPTLPLVPGFE----F   75 (296)
Q Consensus        11 ~~~~~~~~~~-------~~~~----~~~p~~~~~~~~~~evlvkv~~~~i~~~D~~~~~g~~~~~~~~p~~~G~e----~   75 (296)
                      ..|++++++.       ++..    .|.|+|.++     ||||||.+++||++|...+.+....  .+|.++|||    +
T Consensus         6 ~~mka~v~~~~~~g~~~~~~l~~~~~~~P~~~~~-----eVlVkv~a~gi~~~d~~~~~~~~~~--~~p~~~G~e~g~~~   78 (336)
T 4b7c_A            6 QINRQYQLAQRPSGLPGRDTFSFVETPLGEPAEG-----QILVKNEYLSLDPAMRGWMNDARSY--IPPVGIGEVMRALG   78 (336)
T ss_dssp             CEEEEEEECSCCSSSCCTTSEEEEEEECCCCCTT-----CEEEEEEEEECCTHHHHHHSCSCCS--SCCCCTTSBCCCEE
T ss_pred             ccccEEEEEecCCCCCCCCceEEEeccCCCCCCC-----EEEEEEEEEEeCHHHHhhhhccccc--CCCCCCCcccCCce
Confidence            3588999985       2222    678888999     9999999999999999988775432  347777887    7


Q ss_pred             eEEEEEEccCCCCCCCCCCCCCCCCCCCEEEEecCCCCCcccceEeeeCCceEECCCCCCHHHH--hhhccHHHHHHHHH
Q psy1959          76 SGTVIEVADTKSSSTEEDDEEDVLQVGDKVLALNKELLHGFSDQCVVHTNDVFKIPEKMTFEHA--ASLADSYSTAQIVF  153 (296)
Q Consensus        76 ~G~V~~v~~~~~~~~~~g~~v~~~~~Gd~V~~~~~~~~g~~~~~~~v~~~~~~~iP~~~~~~~a--a~l~~~~~ta~~~l  153 (296)
                      +|+|++.          |  +++|++||||++.     |+|+||+++|++.++++|+++++.++  |+++++++|||+++
T Consensus        79 ~G~V~~~----------~--v~~~~vGdrV~~~-----G~~aey~~v~~~~~~~~P~~~~~~~~a~a~l~~~~~tA~~al  141 (336)
T 4b7c_A           79 VGKVLVS----------K--HPGFQAGDYVNGA-----LGVQDYFIGEPKGFYKVDPSRAPLPRYLSALGMTGMTAYFAL  141 (336)
T ss_dssp             EEEEEEE----------C--STTCCTTCEEEEE-----CCSBSEEEECCTTCEEECTTTSCGGGGGTTTSHHHHHHHHHH
T ss_pred             EEEEEec----------C--CCCCCCCCEEecc-----CCceEEEEechHHeEEcCCCCCchHHHhhhcccHHHHHHHHH
Confidence            9999988          5  7789999999985     88999999999999999999977776  78999999999999


Q ss_pred             HHHcCCCCCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHH-HhcCCcEEEEcCCchhHHHHHHHHhCCCc
Q psy1959         154 SRHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLI-RQKGAWAALTFTNEKSLVNKVLEVSGGKY  232 (296)
Q Consensus       154 ~~~~~~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~i~~~~~~~g  232 (296)
                      .+.+++++|++|+|+|++|++|++++|+| +..|++|+++++++++.+.+ +++|++.++++.+ .++.+.+.+.+ +++
T Consensus       142 ~~~~~~~~g~~vlI~Ga~g~iG~~~~~~a-~~~Ga~Vi~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~~~~~-~~~  218 (336)
T 4b7c_A          142 LDVGQPKNGETVVISGAAGAVGSVAGQIA-RLKGCRVVGIAGGAEKCRFLVEELGFDGAIDYKN-EDLAAGLKREC-PKG  218 (336)
T ss_dssp             HHTTCCCTTCEEEESSTTSHHHHHHHHHH-HHTTCEEEEEESSHHHHHHHHHTTCCSEEEETTT-SCHHHHHHHHC-TTC
T ss_pred             HHhcCCCCCCEEEEECCCCHHHHHHHHHH-HHCCCEEEEEeCCHHHHHHHHHHcCCCEEEECCC-HHHHHHHHHhc-CCC
Confidence            88999999999999999999999999999 67899999999999999999 8999999999887 78888888888 458


Q ss_pred             ccEEEECCCCccHHHHHHHhhccCceEEee-----------------cccceeeeeEEeccccc
Q psy1959         233 ANVVFEAVGGEDKTDLIRQKGAWAALTFTN-----------------EKSLVNKVLEVSGGKYA  279 (296)
Q Consensus       233 ~d~vld~~g~~~~~~~~~~lg~~~g~~~~~-----------------~~~~~~k~~~i~g~~~~  279 (296)
                      +|++||++|++.+..+++++ +++|++..-                 ...++.|++++.|++..
T Consensus       219 ~d~vi~~~g~~~~~~~~~~l-~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~  281 (336)
T 4b7c_A          219 IDVFFDNVGGEILDTVLTRI-AFKARIVLCGAISQYNNKEAVRGPANYLSLLVNRARMEGMVVM  281 (336)
T ss_dssp             EEEEEESSCHHHHHHHHTTE-EEEEEEEECCCGGGGC------CCTTTTHHHHTTCEEEECCGG
T ss_pred             ceEEEECCCcchHHHHHHHH-hhCCEEEEEeecccccCCcccccchhHHHHHhCCcEEEEEEhh
Confidence            99999999999999999999 777776431                 12345688899988743

>1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D

Probab=100.00  E-value=1.7e-36  Score=272.36  Aligned_cols=228  Identities=24%  Similarity=0.307  Sum_probs=193.0

Q ss_pred             cceEEecCCCCC-----CCCCCCCCCCCCCCcEEEEeeeeecChhhHHHHcCCCCCCCCCCCcCCCceeEEEEEEccCCC
Q psy1959          13 SDLLLYNGSGDA-----KPTLPLVPGFEFSGTIIEKKMMTRINSSDLLLYNGSGDAKPTLPLVPGFEFSGTVIEVADTKS   87 (296)
Q Consensus        13 ~~~~~~~~~~~~-----~~~p~~~~~~~~~~evlvkv~~~~i~~~D~~~~~g~~~~~~~~p~~~G~e~~G~V~~v~~~~~   87 (296)
                      ||+++++++++.     .|.|+|+++     ||+|||.+++||++|++.+.|.++....+|.++|||++|+|+       
T Consensus         1 Mka~~~~~~g~~~~l~~~~~p~~~~~-----eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~i~G~e~~G~V~-------   68 (302)
T 1iz0_A            1 MKAWVLKRLGGPLELVDLPEPEAEEG-----EVVLRVEAVGLNFADHLMRLGAYLTRLHPPFIPGMEVVGVVE-------   68 (302)
T ss_dssp             CEEEEECSTTSCEEEEECCCCCCCTT-----EEEEEEEEEEECHHHHHHHHTCSSSCCCSSBCCCCEEEEEET-------
T ss_pred             CeEEEEcCCCCchheEECCCCCCCCC-----EEEEEEEEEecCHHHHHHhCCCCCCCCCCCCcccceEEEEEE-------
Confidence            566777665543     577788888     999999999999999999999776545689999999999953       


Q ss_pred             CCCCCCCCCCCCCCCCEEEEecCCCCCcccceEeeeCCceEECCCCCCHHHHhhhccHHHHHHHHHHHHcCCCCCcEEEE
Q psy1959          88 SSTEEDDEEDVLQVGDKVLALNKELLHGFSDQCVVHTNDVFKIPEKMTFEHAASLADSYSTAQIVFSRHAKLKEKQTVLV  167 (296)
Q Consensus        88 ~~~~~g~~v~~~~~Gd~V~~~~~~~~g~~~~~~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vlI  167 (296)
                                    ||||++...  +|+|+||+++|++.++++|++++++++|+++++++|||+++.+.+ +++|++|+|
T Consensus        69 --------------GdrV~~~~~--~G~~aey~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~l~~~~-~~~g~~vlV  131 (302)
T 1iz0_A           69 --------------GRRYAALVP--QGGLAERVAVPKGALLPLPEGLSPEEAAAFPVSFLTAYLALKRAQ-ARPGEKVLV  131 (302)
T ss_dssp             --------------TEEEEEECS--SCCSBSEEEEEGGGCEECCTTCCHHHHHTSHHHHHHHHHHHHHTT-CCTTCEEEE
T ss_pred             --------------CcEEEEecC--CcceeeEEEEcHHHcEeCCCCCCHHHHHHhhhHHHHHHHHHHHhc-CCCCCEEEE
Confidence                          999999865  699999999999999999999999999999999999999997677 999999999


Q ss_pred             EcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCcEEEEcCCchhHHHHHHHHhCCCcccEEEECCCCccHHH
Q psy1959         168 TAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNKVLEVSGGKYANVVFEAVGGEDKTD  247 (296)
Q Consensus       168 ~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~g~d~vld~~g~~~~~~  247 (296)
                      +|++|++|++++|+| +..|++|+++++++++++.++++|++.++++++..++.+.+      +++|++|| +|++.+..
T Consensus       132 ~Ga~G~vG~~~~~~a-~~~Ga~Vi~~~~~~~~~~~~~~~ga~~~~~~~~~~~~~~~~------~~~d~vid-~g~~~~~~  203 (302)
T 1iz0_A          132 QAAAGALGTAAVQVA-RAMGLRVLAAASRPEKLALPLALGAEEAATYAEVPERAKAW------GGLDLVLE-VRGKEVEE  203 (302)
T ss_dssp             SSTTBHHHHHHHHHH-HHTTCEEEEEESSGGGSHHHHHTTCSEEEEGGGHHHHHHHT------TSEEEEEE-CSCTTHHH
T ss_pred             ECCCcHHHHHHHHHH-HHCCCEEEEEeCCHHHHHHHHhcCCCEEEECCcchhHHHHh------cCceEEEE-CCHHHHHH
Confidence            999999999999999 67899999999999999999999999888775312333332      48999999 99999999


Q ss_pred             HHHHhhccCceEEe-----------ecccceeeeeEEecccc
Q psy1959         248 LIRQKGAWAALTFT-----------NEKSLVNKVLEVSGGKY  278 (296)
Q Consensus       248 ~~~~lg~~~g~~~~-----------~~~~~~~k~~~i~g~~~  278 (296)
                      +++++ +++|++..           +...++.|++++.|++.
T Consensus       204 ~~~~l-~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~g~~~  244 (302)
T 1iz0_A          204 SLGLL-AHGGRLVYIGAAEGEVAPIPPLRLMRRNLAVLGFWL  244 (302)
T ss_dssp             HHTTE-EEEEEEEEC-------CCCCTTHHHHTTCEEEECCH
T ss_pred             HHHhh-ccCCEEEEEeCCCCCCCCcCHHHHHhCCCeEEEEec
Confidence            99999 77776632           22235678888888763

>3slk_A Polyketide synthase extender module 2; rossmann fold, NADPH, oxidoreductase; HET: NDP; 3.00A {Saccharopolyspora spinosa}

Probab=100.00  E-value=1.1e-36  Score=305.19  Aligned_cols=229  Identities=23%  Similarity=0.279  Sum_probs=200.5

Q ss_pred             EeecccCCcceEEecCCCCCCCCCCCCCCCCCCCcEEEEeeeeecChhhHHHHcCCCCCCCCCCCcCCCceeEEEEEEcc
Q psy1959           5 IQCCALNSSDLLLYNGSGDAKPTLPLVPGFEFSGTIIEKKMMTRINSSDLLLYNGSGDAKPTLPLVPGFEFSGTVIEVAD   84 (296)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~evlvkv~~~~i~~~D~~~~~g~~~~~~~~p~~~G~e~~G~V~~v~~   84 (296)
                      +.....|..+.+.|..  .+.|.|+|+++     ||+|||.++|||++|++++.|.++.    |.++|||++|+|+++  
T Consensus       213 l~~~~~G~~~~L~~~~--~~~p~~~~~~~-----eVlV~V~a~gin~~D~~~~~G~~~~----~~~lG~E~aG~V~~v--  279 (795)
T 3slk_A          213 LEATRPGSLDGLALVD--EPTATAPLGDG-----EVRIAMRAAGVNFRDALIALGMYPG----VASLGSEGAGVVVET--  279 (795)
T ss_dssp             EEESSTTSSTTEEECC--CHHHHSCCCSS-----EEEEEEEEEEECHHHHHHTTTCCSS----CCCSCCCEEEEEEEE--
T ss_pred             EecCCCCCccceEEEe--CCccCCCCCCC-----EEEEEEEEEccCHHHHHHHcCCCCC----CccccceeEEEEEEe--
Confidence            3344455555555542  11234568889     9999999999999999999997643    568999999999999  


Q ss_pred             CCCCCCCCCCCCCCCCCCCEEEEecCCCCCcccceEeeeCCceEECCCCCCHHHHhhhccHHHHHHHHHHHHcCCCCCcE
Q psy1959          85 TKSSSTEEDDEEDVLQVGDKVLALNKELLHGFSDQCVVHTNDVFKIPEKMTFEHAASLADSYSTAQIVFSRHAKLKEKQT  164 (296)
Q Consensus        85 ~~~~~~~~g~~v~~~~~Gd~V~~~~~~~~g~~~~~~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~  164 (296)
                              |++|++|++||||+++..   |+|+||+++++..++++|++++++++|+++..++|||+++.+.+++++|++
T Consensus       280 --------G~~V~~~~vGDrV~~~~~---G~~ae~~~v~~~~~~~iP~~ls~~~AA~l~~~~~Ta~~al~~~a~l~~G~~  348 (795)
T 3slk_A          280 --------GPGVTGLAPGDRVMGMIP---KAFGPLAVADHRMVTRIPAGWSFARAASVPIVFLTAYYALVDLAGLRPGES  348 (795)
T ss_dssp             --------CSSCCSSCTTCEEEECCS---SCSSSEEEEETTSEEECCTTCCHHHHHHHHHHHHHHHCCCCCCTCCCTTCC
T ss_pred             --------CCCCCcCCCCCEEEEEec---CCCcCEEEeehHHEEECCCCCCHHHHHhhhHHHHHHHHHHHHHhCCCCCCE
Confidence                    999999999999999866   999999999999999999999999999999999999999988899999999


Q ss_pred             EEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCcEEEEcCCchhHHHHHHHHhCCCcccEEEECCCCcc
Q psy1959         165 VLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNKVLEVSGGKYANVVFEAVGGED  244 (296)
Q Consensus       165 vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~g~d~vld~~g~~~  244 (296)
                      |||+|++|++|++++|+| +..|++|+++++++ |.+.++ +|++.++++++ .++.+.+++.++++|+|+|||++|++.
T Consensus       349 VLI~gaaGgvG~~aiqlA-k~~Ga~V~~t~~~~-k~~~l~-lga~~v~~~~~-~~~~~~i~~~t~g~GvDvVld~~gg~~  424 (795)
T 3slk_A          349 LLVHSAAGGVGMAAIQLA-RHLGAEVYATASED-KWQAVE-LSREHLASSRT-CDFEQQFLGATGGRGVDVVLNSLAGEF  424 (795)
T ss_dssp             EEEESTTBHHHHHHHHHH-HHTTCCEEEECCGG-GGGGSC-SCGGGEECSSS-STHHHHHHHHSCSSCCSEEEECCCTTT
T ss_pred             EEEecCCCHHHHHHHHHH-HHcCCEEEEEeChH-Hhhhhh-cChhheeecCC-hhHHHHHHHHcCCCCeEEEEECCCcHH
Confidence            999999999999999999 67899999998665 666665 89999999887 789999999999999999999999999


Q ss_pred             HHHHHHHhhccCceEEee
Q psy1959         245 KTDLIRQKGAWAALTFTN  262 (296)
Q Consensus       245 ~~~~~~~lg~~~g~~~~~  262 (296)
                      +..+++++ +++|++..-
T Consensus       425 ~~~~l~~l-~~~Gr~v~i  441 (795)
T 3slk_A          425 ADASLRML-PRGGRFLEL  441 (795)
T ss_dssp             THHHHTSC-TTCEEEEEC
T ss_pred             HHHHHHHh-cCCCEEEEe
Confidence            99999999 888887543

>2zb4_A Prostaglandin reductase 2; rossmann fold, alternative splicing, cytoplasm, NADP, oxidoreductase; HET: NAP 5OP; 1.63A {Homo sapiens} PDB: 2zb7_A* 2zb8_A* 2w98_A* 2vna_A* 2w4q_A* 1vj1_A 2zb3_A*

Probab=100.00  E-value=2e-35  Score=271.36  Aligned_cols=241  Identities=15%  Similarity=0.172  Sum_probs=202.8

Q ss_pred             CcceEEe-cCC---C-----CC----CCCCCC-CCCCCCCCcEEEEeeeeecChhhHHHHcC----CCCCCCCCCCcCCC
Q psy1959          12 SSDLLLY-NGS---G-----DA----KPTLPL-VPGFEFSGTIIEKKMMTRINSSDLLLYNG----SGDAKPTLPLVPGF   73 (296)
Q Consensus        12 ~~~~~~~-~~~---~-----~~----~~~p~~-~~~~~~~~evlvkv~~~~i~~~D~~~~~g----~~~~~~~~p~~~G~   73 (296)
                      +||++++ +++   +     ..    .|.|.| .++     ||||||.+++||++|+..+.+    .+..+..+|.++||
T Consensus         8 ~mka~v~~~~~~~~g~p~~~~l~~~~~~~P~~~~~~-----eVlVkv~a~gi~~~D~~~~~~~~g~~~~~~~~~p~v~G~   82 (357)
T 2zb4_A            8 IVQRVVLNSRPGKNGNPVAENFRMEEVYLPDNINEG-----QVQVRTLYLSVDPYMRCRMNEDTGTDYITPWQLSQVVDG   82 (357)
T ss_dssp             EEEEEEECCCCCTTSCCCGGGEEEEEEECCSCCCTT-----EEEEEEEEEECCTTHHHHTSSSCSSSSSCCCCBTSBCEE
T ss_pred             cceEEEEeccCCCCCCCCcCceEEEeecCCCCCCCC-----eEEEEEEEEecCHHHHhhccccccccccCCCCCCccccc
Confidence            5889988 454   2     12    567777 888     999999999999999988776    33223467899999


Q ss_pred             ceeEEEEEEccCCCCCCCCCCCCCCCCCCCEEEEecCCCCCcccceEeeeCCceEECCCCC-----CHHHHhhhccHHHH
Q psy1959          74 EFSGTVIEVADTKSSSTEEDDEEDVLQVGDKVLALNKELLHGFSDQCVVHTNDVFKIPEKM-----TFEHAASLADSYST  148 (296)
Q Consensus        74 e~~G~V~~v~~~~~~~~~~g~~v~~~~~Gd~V~~~~~~~~g~~~~~~~v~~~~~~~iP~~~-----~~~~aa~l~~~~~t  148 (296)
                      |++|+|++-            +|++|++||||++..    |+|+||++++++.++++|+++     +++ +|+++++++|
T Consensus        83 E~~G~V~~~------------~v~~~~vGdrV~~~~----G~~aey~~v~~~~~~~iP~~~~~~~~~~~-~a~l~~~~~t  145 (357)
T 2zb4_A           83 GGIGIIEES------------KHTNLTKGDFVTSFY----WPWQTKVILDGNSLEKVDPQLVDGHLSYF-LGAIGMPGLT  145 (357)
T ss_dssp             EEEEEEEEE------------CSTTCCTTCEEEEEE----EESBSEEEEEGGGCEECCGGGGTTCGGGG-GTTTSHHHHH
T ss_pred             cEEEEEEec------------CCCCCCCCCEEEecC----CCcEEEEEEchHHceecCcccccCchhHH-HHhcccHHHH
Confidence            999999983            456799999999873    789999999999999999999     555 6779999999


Q ss_pred             HHHHHHHHcCCCCC--cEEEEEcCCCcHHHHHHHHHHHhCCC-EEEEEeCCcchHHHHHh-cCCcEEEEcCCchhHHHHH
Q psy1959         149 AQIVFSRHAKLKEK--QTVLVTAAGGGLGLAAVDMATKIYKA-KVIGVCNSEDKTDLIRQ-KGAWAALTFTNEKSLVNKV  224 (296)
Q Consensus       149 a~~~l~~~~~~~~g--~~vlI~Ga~g~vG~aa~~la~~~~g~-~Vi~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~i  224 (296)
                      ||+++.+.+++++|  ++|+|+|++|++|++++|+| +..|+ +|+++++++++.+.+++ +|++.++++.+ .++.+.+
T Consensus       146 a~~al~~~~~~~~g~~~~vlI~GasggiG~~~~~~a-~~~Ga~~Vi~~~~~~~~~~~~~~~~g~~~~~d~~~-~~~~~~~  223 (357)
T 2zb4_A          146 SLIGIQEKGHITAGSNKTMVVSGAAGACGSVAGQIG-HFLGCSRVVGICGTHEKCILLTSELGFDAAINYKK-DNVAEQL  223 (357)
T ss_dssp             HHHHHHHHSCCCTTSCCEEEESSTTBHHHHHHHHHH-HHTTCSEEEEEESCHHHHHHHHHTSCCSEEEETTT-SCHHHHH
T ss_pred             HHHHHHHhcCCCCCCccEEEEECCCcHHHHHHHHHH-HHCCCCeEEEEeCCHHHHHHHHHHcCCceEEecCc-hHHHHHH
Confidence            99999888999999  99999999999999999999 66899 99999999999999987 99998898877 6788888


Q ss_pred             HHHhCCCcccEEEECCCCccHHHHHHHhhccCceEEeec--------------------ccceeeeeEEecccc
Q psy1959         225 LEVSGGKYANVVFEAVGGEDKTDLIRQKGAWAALTFTNE--------------------KSLVNKVLEVSGGKY  278 (296)
Q Consensus       225 ~~~~~~~g~d~vld~~g~~~~~~~~~~lg~~~g~~~~~~--------------------~~~~~k~~~i~g~~~  278 (296)
                      .+.+.+ ++|++|||+|++.+..+++++ +++|++..-.                    ..++.|++++.|++.
T Consensus       224 ~~~~~~-~~d~vi~~~G~~~~~~~~~~l-~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~  295 (357)
T 2zb4_A          224 RESCPA-GVDVYFDNVGGNISDTVISQM-NENSHIILCGQISQYNKDVPYPPPLSPAIEAIQKERNITRERFLV  295 (357)
T ss_dssp             HHHCTT-CEEEEEESCCHHHHHHHHHTE-EEEEEEEECCCGGGTTSCCCSSCCCCHHHHHHHHHHTCEEEECCG
T ss_pred             HHhcCC-CCCEEEECCCHHHHHHHHHHh-ccCcEEEEECCccccccCccccccchhhhhhhhhcceeEEEEeeh
Confidence            888766 899999999998899999999 7777764311                    134567788888753

>2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A*

Probab=100.00  E-value=4.8e-35  Score=269.73  Aligned_cols=235  Identities=17%  Similarity=0.177  Sum_probs=190.5

Q ss_pred             cceEEecCCCC-C----CCCCCCCC-CCCCCCcEEEEeeeeecChhhHHHHcC--CCCCCCCC---CCcCCCceeEEEEE
Q psy1959          13 SDLLLYNGSGD-A----KPTLPLVP-GFEFSGTIIEKKMMTRINSSDLLLYNG--SGDAKPTL---PLVPGFEFSGTVIE   81 (296)
Q Consensus        13 ~~~~~~~~~~~-~----~~~p~~~~-~~~~~~evlvkv~~~~i~~~D~~~~~g--~~~~~~~~---p~~~G~e~~G~V~~   81 (296)
                      |++++++++++ .    .|.|.|.+ +     ||+|||.+++||++|++.+.|  .++. ..+   |.++|||++|+|++
T Consensus         1 MkA~~~~~~g~~l~~~~~~~P~~~~~~-----eVlVkv~a~gi~~~D~~~~~g~~~~~~-~~~~~~p~v~G~E~~G~V~~   74 (366)
T 2cdc_A            1 MKAIIVKPPNAGVQVKDVDEKKLDSYG-----KIKIRTIYNGICGADREIVNGKLTLST-LPKGKDFLVLGHEAIGVVEE   74 (366)
T ss_dssp             CEEEEECTTSCCCEEEECCGGGSCCCS-----SEEEEEEEEEECHHHHHHHTTCC--------CCSCEECCSEEEEEECS
T ss_pred             CeEEEEeCCCCceEEEECcCCCCCCCC-----EEEEEEEEEeeccccHHHHcCCCCCCC-CCcCCCCCcCCcceEEEEEe
Confidence            67888887776 3    67777888 8     999999999999999999998  5542 356   89999999999986


Q ss_pred             EccCCCCCCCCCCCCCCCCCCCEEEEec--------------------------C-C-CCCcccceEeeeCCceEECCCC
Q psy1959          82 VADTKSSSTEEDDEEDVLQVGDKVLALN--------------------------K-E-LLHGFSDQCVVHTNDVFKIPEK  133 (296)
Q Consensus        82 v~~~~~~~~~~g~~v~~~~~Gd~V~~~~--------------------------~-~-~~g~~~~~~~v~~~~~~~iP~~  133 (296)
                      -          +   ++|++||||++..                          . . ..|+|+||++++++.++++|++
T Consensus        75 ~----------~---~~~~~GDrV~~~~~~~cg~C~~C~~g~~~~C~~~~~~~~g~~~~~G~~aey~~v~~~~~~~iP~~  141 (366)
T 2cdc_A           75 S----------Y---HGFSQGDLVMPVNRRGCGICRNCLVGRPDFCETGEFGEAGIHKMDGFMREWWYDDPKYLVKIPKS  141 (366)
T ss_dssp             C----------C---SSCCTTCEEEECSEECCSSSHHHHTTCGGGCSSSCCEEETTBEECCSCBSEEEECGGGEEEECGG
T ss_pred             C----------C---CCCCCCCEEEEcCCCCCCCChhhhCcCcccCCCCCcccCCccCCCCceeEEEEechHHeEECcCC
Confidence            2          3   5699999999742                          1 1 3599999999999999999999


Q ss_pred             CCHHHHhhhccHHHHHHHHHH--H--HcCCC--C-------CcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCc---
Q psy1959         134 MTFEHAASLADSYSTAQIVFS--R--HAKLK--E-------KQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSE---  197 (296)
Q Consensus       134 ~~~~~aa~l~~~~~ta~~~l~--~--~~~~~--~-------g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~---  197 (296)
                      ++ ++| +++.++.|||+++.  +  .++++  +       |++|+|+|+ |++|++++|+| +..|++|+++++++   
T Consensus       142 l~-~~A-al~~~~~ta~~al~~~~~~~~~~~~~~~~~~~~~g~~VlV~Ga-G~vG~~~~q~a-~~~Ga~Vi~~~~~~~~~  217 (366)
T 2cdc_A          142 IE-DIG-ILAQPLADIEKSIEEILEVQKRVPVWTCDDGTLNCRKVLVVGT-GPIGVLFTLLF-RTYGLEVWMANRREPTE  217 (366)
T ss_dssp             GT-TTG-GGHHHHHHHHHHHHHHHHHGGGSSCCSCTTSSSTTCEEEEESC-HHHHHHHHHHH-HHHTCEEEEEESSCCCH
T ss_pred             cc-hhh-hhcCcHHHHHHHHHhhhhcccCccccccccccCCCCEEEEECC-CHHHHHHHHHH-HhCCCEEEEEeCCccch
Confidence            99 776 48899999999996  4  78898  8       999999999 99999999999 56799999999998   


Q ss_pred             chHHHHHhcCCcEEEEcCCchhHHHHHHHHhCCCcccEEEECCCCc-cH-HHHHHHhhccCceEEe-----------ecc
Q psy1959         198 DKTDLIRQKGAWAALTFTNEKSLVNKVLEVSGGKYANVVFEAVGGE-DK-TDLIRQKGAWAALTFT-----------NEK  264 (296)
Q Consensus       198 ~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~g~d~vld~~g~~-~~-~~~~~~lg~~~g~~~~-----------~~~  264 (296)
                      ++.++++++|++.+ + ++  ++.+.+.+ ++ .++|++||++|.. .+ +.+++++ +++|++.+           +..
T Consensus       218 ~~~~~~~~~ga~~v-~-~~--~~~~~~~~-~~-~~~d~vid~~g~~~~~~~~~~~~l-~~~G~iv~~g~~~~~~~~~~~~  290 (366)
T 2cdc_A          218 VEQTVIEETKTNYY-N-SS--NGYDKLKD-SV-GKFDVIIDATGADVNILGNVIPLL-GRNGVLGLFGFSTSGSVPLDYK  290 (366)
T ss_dssp             HHHHHHHHHTCEEE-E-CT--TCSHHHHH-HH-CCEEEEEECCCCCTHHHHHHGGGE-EEEEEEEECSCCCSCEEEEEHH
T ss_pred             HHHHHHHHhCCcee-c-hH--HHHHHHHH-hC-CCCCEEEECCCChHHHHHHHHHHH-hcCCEEEEEecCCCCccccChh
Confidence            89999999999877 6 43  55566666 54 5899999999994 77 8999999 77766532           222


Q ss_pred             c---ceeeeeEEeccc
Q psy1959         265 S---LVNKVLEVSGGK  277 (296)
Q Consensus       265 ~---~~~k~~~i~g~~  277 (296)
                      .   ++.|++++.|++
T Consensus       291 ~~~~~~~~~~~i~g~~  306 (366)
T 2cdc_A          291 TLQEIVHTNKTIIGLV  306 (366)
T ss_dssp             HHHHHHHTTCEEEECC
T ss_pred             hhHHHHhcCcEEEEec
Confidence            3   667778888765

>1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A*

Probab=100.00  E-value=9.9e-33  Score=250.97  Aligned_cols=237  Identities=20%  Similarity=0.231  Sum_probs=195.0

Q ss_pred             CcceEEecCC--CC-----C----CCCCCCCCCCCCCCcEEEEeeeeecChhhHHHHcCCCCCCCCCCCcCCCceeEEEE
Q psy1959          12 SSDLLLYNGS--GD-----A----KPTLPLVPGFEFSGTIIEKKMMTRINSSDLLLYNGSGDAKPTLPLVPGFEFSGTVI   80 (296)
Q Consensus        12 ~~~~~~~~~~--~~-----~----~~~p~~~~~~~~~~evlvkv~~~~i~~~D~~~~~g~~~~~~~~p~~~G~e~~G~V~   80 (296)
                      +|+++++.+.  +.     .    .|.|+|.++     ||||||.+++||+.|.. +.+    +..+|.++|||++|+|+
T Consensus         7 ~mka~~~~~~~~g~~~~~~l~~~e~~~P~~~~~-----eVlVkv~a~gi~~~~~~-~~~----~~~~p~~~g~e~~G~Vv   76 (333)
T 1v3u_A            7 KAKSWTLKKHFQGKPTQSDFELKTVELPPLKNG-----EVLLEALFLSVDPYMRI-ASK----RLKEGAVMMGQQVARVV   76 (333)
T ss_dssp             EEEEEEECC-----CCGGGEEEEEEECCCCCTT-----CEEEEEEEEECCTHHHH-HTT----TCCTTSBCCCCEEEEEE
T ss_pred             cccEEEEeecCCCCCCccceEEEeCCCCCCCCC-----EEEEEEEEeccCHHHcc-ccC----cCCCCcccccceEEEEE
Confidence            4788888763  21     1    577788889     99999999999999873 221    23568899999999999


Q ss_pred             EEccCCCCCCCCCCCCCCCCCCCEEEEecCCCCCcccceEeeeCCceEECCCC----CCHHH-HhhhccHHHHHHHHHHH
Q psy1959          81 EVADTKSSSTEEDDEEDVLQVGDKVLALNKELLHGFSDQCVVHTNDVFKIPEK----MTFEH-AASLADSYSTAQIVFSR  155 (296)
Q Consensus        81 ~v~~~~~~~~~~g~~v~~~~~Gd~V~~~~~~~~g~~~~~~~v~~~~~~~iP~~----~~~~~-aa~l~~~~~ta~~~l~~  155 (296)
                      +.          +  +++|++||||++.     |+|+||++++.+.++++|++    +++++ +|+|+++++|||+++.+
T Consensus        77 ~~----------~--v~~~~vGdrV~~~-----g~~aey~~v~~~~~~~iP~~~~~~~~~~~a~a~l~~~~~ta~~al~~  139 (333)
T 1v3u_A           77 ES----------K--NSAFPAGSIVLAQ-----SGWTTHFISDGKGLEKLLTEWPDKLPLSLALGTIGMPGLTAYFGLLE  139 (333)
T ss_dssp             EE----------S--CTTSCTTCEEEEC-----CCSBSEEEESSTTEEECC--CCTTSCGGGGGTTTSHHHHHHHHHHHT
T ss_pred             ec----------C--CCCCCCCCEEEec-----CceEEEEEechHHeEEcCcccccCCCHHHHHHHhCChHHHHHHHHHH
Confidence            87          3  6789999999884     78999999999999999997    88887 48899999999999988


Q ss_pred             HcCCCCCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCcEEEEcCCchhHHHHHHHHhCCCcccE
Q psy1959         156 HAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNKVLEVSGGKYANV  235 (296)
Q Consensus       156 ~~~~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~g~d~  235 (296)
                      .+++++|++++|+|++|++|+++++++ +..|++|+++++++++.+.++++|++.++++.+..++.+.+.+.++ .++|+
T Consensus       140 ~~~~~~g~~vlV~Ga~ggiG~~~~~~~-~~~G~~V~~~~~~~~~~~~~~~~g~~~~~d~~~~~~~~~~~~~~~~-~~~d~  217 (333)
T 1v3u_A          140 VCGVKGGETVLVSAAAGAVGSVVGQIA-KLKGCKVVGAAGSDEKIAYLKQIGFDAAFNYKTVNSLEEALKKASP-DGYDC  217 (333)
T ss_dssp             TSCCCSSCEEEEESTTBHHHHHHHHHH-HHTTCEEEEEESSHHHHHHHHHTTCSEEEETTSCSCHHHHHHHHCT-TCEEE
T ss_pred             hhCCCCCCEEEEecCCCcHHHHHHHHH-HHCCCEEEEEeCCHHHHHHHHhcCCcEEEecCCHHHHHHHHHHHhC-CCCeE
Confidence            889999999999999999999999999 6689999999999999999999999888887653567777877775 48999


Q ss_pred             EEECCCCccHHHHHHHhhccCceEEee-----------------cccceeeeeEEecccc
Q psy1959         236 VFEAVGGEDKTDLIRQKGAWAALTFTN-----------------EKSLVNKVLEVSGGKY  278 (296)
Q Consensus       236 vld~~g~~~~~~~~~~lg~~~g~~~~~-----------------~~~~~~k~~~i~g~~~  278 (296)
                      +||++|++.+..+++++ +++|++.+-                 ...++.|++++.|++.
T Consensus       218 vi~~~g~~~~~~~~~~l-~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~  276 (333)
T 1v3u_A          218 YFDNVGGEFLNTVLSQM-KDFGKIAICGAISVYNRMDQLPPGPSPESIIYKQLRIEGFIV  276 (333)
T ss_dssp             EEESSCHHHHHHHHTTE-EEEEEEEECCCCC-------CCBCCCHHHHHHTTCEEEECCG
T ss_pred             EEECCChHHHHHHHHHH-hcCCEEEEEeccccccCCCCCCCCcCHHHHhhcCceEEEEeh
Confidence            99999998889999999 777766321                 1134567788888764

>2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A*

Probab=100.00  E-value=1.3e-32  Score=251.40  Aligned_cols=227  Identities=19%  Similarity=0.244  Sum_probs=186.3

Q ss_pred             CCCC-CCCCCCCCCcEEEEeeeeecChhhHHHHcCCCCCC---CCCCCcCCCceeEEEEE--EccCCCCCCCCCCCCCCC
Q psy1959          26 PTLP-LVPGFEFSGTIIEKKMMTRINSSDLLLYNGSGDAK---PTLPLVPGFEFSGTVIE--VADTKSSSTEEDDEEDVL   99 (296)
Q Consensus        26 ~~p~-~~~~~~~~~evlvkv~~~~i~~~D~~~~~g~~~~~---~~~p~~~G~e~~G~V~~--v~~~~~~~~~~g~~v~~~   99 (296)
                      |.|. |+++     ||||||.++++|+.|. .+.|.+...   ..+|+++|||++|++++  +          |+++++|
T Consensus        31 ~~P~~~~~~-----eVlVkv~a~g~~~~~~-~~~g~~~~~~~~~~~p~v~G~e~~G~~~~GvV----------~~~v~~~   94 (345)
T 2j3h_A           31 ELRVPEGTN-----SVLVKNLYLSCDPYMR-IRMGKPDPSTAALAQAYTPGQPIQGYGVSRII----------ESGHPDY   94 (345)
T ss_dssp             ECCSCSSSS-----CEEEEECEEECCTTHH-HHHBC---------CCCCTTSBCEEEEEEEEE----------EECSTTC
T ss_pred             CCCCCCCCC-----EEEEEEEEecCCHHHH-hhcccCCCCccccCCCcCCCCeeecceEEEEE----------ecCCCCC
Confidence            4554 7888     9999999999988874 444543211   24689999999999999  9          8888899


Q ss_pred             CCCCEEEEecCCCCCcccceEeeeCCc--eEECCC---CCCHHHHhhhccHHHHHHHHHHHHcCCCCCcEEEEEcCCCcH
Q psy1959         100 QVGDKVLALNKELLHGFSDQCVVHTND--VFKIPE---KMTFEHAASLADSYSTAQIVFSRHAKLKEKQTVLVTAAGGGL  174 (296)
Q Consensus       100 ~~Gd~V~~~~~~~~g~~~~~~~v~~~~--~~~iP~---~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vlI~Ga~g~v  174 (296)
                      ++||||++.     |+|+||++++...  ++++|+   .++++ +|+++++++|||+++.+.+++++|++|+|+|++|++
T Consensus        95 ~vGdrV~~~-----g~~aey~~v~~~~~~~~~ip~~~~~~~~~-aa~l~~~~~ta~~al~~~~~~~~g~~vlI~Ga~g~i  168 (345)
T 2j3h_A           95 KKGDLLWGI-----VAWEEYSVITPMTHAHFKIQHTDVPLSYY-TGLLGMPGMTAYAGFYEVCSPKEGETVYVSAASGAV  168 (345)
T ss_dssp             CTTCEEEEE-----EESBSEEEECCCTTTCEEECCCSSCTTGG-GTTTSHHHHHHHHHHHTTSCCCTTCEEEESSTTSHH
T ss_pred             CCCCEEEee-----cCceeEEEecccccceeecCCCCCCHHHH-HHhccccHHHHHHHHHHHhCCCCCCEEEEECCCcHH
Confidence            999999885     7899999999876  999996   35655 577999999999999888999999999999999999


Q ss_pred             HHHHHHHHHHhCCCEEEEEeCCcchHHHHH-hcCCcEEEEcCCchhHHHHHHHHhCCCcccEEEECCCCccHHHHHHHhh
Q psy1959         175 GLAAVDMATKIYKAKVIGVCNSEDKTDLIR-QKGAWAALTFTNEKSLVNKVLEVSGGKYANVVFEAVGGEDKTDLIRQKG  253 (296)
Q Consensus       175 G~aa~~la~~~~g~~Vi~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~i~~~~~~~g~d~vld~~g~~~~~~~~~~lg  253 (296)
                      |++++|+| +..|++|+++++++++.+.++ ++|++.++++.+..++.+.+.+.++ .++|++||++|++.+..+++++ 
T Consensus       169 G~~~~~~a-~~~G~~V~~~~~~~~~~~~~~~~~g~~~~~d~~~~~~~~~~~~~~~~-~~~d~vi~~~g~~~~~~~~~~l-  245 (345)
T 2j3h_A          169 GQLVGQLA-KMMGCYVVGSAGSKEKVDLLKTKFGFDDAFNYKEESDLTAALKRCFP-NGIDIYFENVGGKMLDAVLVNM-  245 (345)
T ss_dssp             HHHHHHHH-HHTTCEEEEEESSHHHHHHHHHTSCCSEEEETTSCSCSHHHHHHHCT-TCEEEEEESSCHHHHHHHHTTE-
T ss_pred             HHHHHHHH-HHCCCEEEEEeCCHHHHHHHHHHcCCceEEecCCHHHHHHHHHHHhC-CCCcEEEECCCHHHHHHHHHHH-
Confidence            99999999 668999999999999999998 7999988888653466777777764 6899999999998899999999 


Q ss_pred             ccCceEEee----------------cccceeeeeEEeccc
Q psy1959         254 AWAALTFTN----------------EKSLVNKVLEVSGGK  277 (296)
Q Consensus       254 ~~~g~~~~~----------------~~~~~~k~~~i~g~~  277 (296)
                      +++|++.+-                ...++.|++++.|++
T Consensus       246 ~~~G~~v~~G~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~  285 (345)
T 2j3h_A          246 NMHGRIAVCGMISQYNLENQEGVHNLSNIIYKRNRIQGFV  285 (345)
T ss_dssp             EEEEEEEECCCGGGTTCSSCCCBSCTTHHHHHTCEEEECC
T ss_pred             hcCCEEEEEccccccccCCccccccHHHHhhhceeeceee
Confidence            777776431                123556778888765

>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A*

Probab=99.94  E-value=1.3e-26  Score=254.17  Aligned_cols=215  Identities=21%  Similarity=0.288  Sum_probs=188.0

Q ss_pred             cEEEEeeeeecChhhHHHHcCCCCCC------CCCCCcCCCceeEEEEEEccCCCCCCCCCCCCCCCCCCCEEEEecCCC
Q psy1959          39 TIIEKKMMTRINSSDLLLYNGSGDAK------PTLPLVPGFEFSGTVIEVADTKSSSTEEDDEEDVLQVGDKVLALNKEL  112 (296)
Q Consensus        39 evlvkv~~~~i~~~D~~~~~g~~~~~------~~~p~~~G~e~~G~V~~v~~~~~~~~~~g~~v~~~~~Gd~V~~~~~~~  112 (296)
                      ||+|||.++++|+.|+++..|.++..      ...|.++|+|++|+|                    .+||+|+++..  
T Consensus      1561 eVlVkV~aaglN~~Dv~~~~G~~~~~~~p~~~~~~~~~lG~E~aG~V--------------------~vGdrV~g~~~-- 1618 (2512)
T 2vz8_A         1561 DRLCSVYYTSLNFRDVMLATGKLSPDSIPGKWLTRDCMLGMEFSGRD--------------------ASGRRVMGMVP-- 1618 (2512)
T ss_dssp             TTEEEEEEEECCHHHHHHHHTSSCGGGCCSCCSCSSSCCCCEEEEEE--------------------TTSCCEEEECS--
T ss_pred             ceEEEEEecccCHHHHHHHhCCCccccccccccccCCceEEEEEEEE--------------------ccCCEEEEeec--
Confidence            99999999999999999999876421      124568999999973                    36999999865  


Q ss_pred             CCcccceEeeeCCceEECCCCCCHHHHhhhccHHHHHHHHHHHHcCCCCCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEE
Q psy1959         113 LHGFSDQCVVHTNDVFKIPEKMTFEHAASLADSYSTAQIVFSRHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKAKVIG  192 (296)
Q Consensus       113 ~g~~~~~~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~  192 (296)
                      .|+|+||+++|++.++++|+++++++||+++++++|||+++.+.+++++|++|||+|++|++|++++|+| +..|++|++
T Consensus      1619 ~G~~Aeyv~vp~~~v~~iPd~ls~~eAA~lp~~~~TA~~al~~~a~l~~Ge~VLI~gaaGgVG~aAiqlA-k~~Ga~Via 1697 (2512)
T 2vz8_A         1619 AEGLATSVLLLQHATWEVPSTWTLEEAASVPIVYTTAYYSLVVRGRMQPGESVLIHSGSGGVGQAAIAIA-LSRGCRVFT 1697 (2512)
T ss_dssp             SCCSBSEEECCGGGEEECCTTSCHHHHTTSHHHHHHHHHHHTTTTCCCTTCEEEETTTTSHHHHHHHHHH-HHTTCEEEE
T ss_pred             CCceeeEEEcccceEEEeCCCCCHHHHHHhHHHHHHHHHHHHHHhcCCCCCEEEEEeCChHHHHHHHHHH-HHcCCEEEE
Confidence            5999999999999999999999999999999999999999988899999999999999999999999999 678999999


Q ss_pred             EeCCcchHHHHHh----cCCcEEEEcCCchhHHHHHHHHhCCCcccEEEECCCCccHHHHHHHhhccCceEEeec-----
Q psy1959         193 VCNSEDKTDLIRQ----KGAWAALTFTNEKSLVNKVLEVSGGKYANVVFEAVGGEDKTDLIRQKGAWAALTFTNE-----  263 (296)
Q Consensus       193 ~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~~~i~~~~~~~g~d~vld~~g~~~~~~~~~~lg~~~g~~~~~~-----  263 (296)
                      ++.+++|.+++++    +|++.++++++ .++.+.+++.++++|+|+|||+++++.+..+++++ +++|++..-.     
T Consensus      1698 t~~s~~k~~~l~~~~~~lga~~v~~~~~-~~~~~~i~~~t~g~GvDvVld~~g~~~l~~~l~~L-~~~Gr~V~iG~~~~~ 1775 (2512)
T 2vz8_A         1698 TVGSAEKRAYLQARFPQLDETCFANSRD-TSFEQHVLRHTAGKGVDLVLNSLAEEKLQASVRCL-AQHGRFLEIGKFDLS 1775 (2512)
T ss_dssp             EESCHHHHHHHHHHCTTCCSTTEEESSS-SHHHHHHHHTTTSCCEEEEEECCCHHHHHHHHTTE-EEEEEEEECCCHHHH
T ss_pred             EeCChhhhHHHHhhcCCCCceEEecCCC-HHHHHHHHHhcCCCCceEEEECCCchHHHHHHHhc-CCCcEEEEeeccccc
Confidence            9999999999986    68888898887 78889999999888999999999988999999999 8887764321     


Q ss_pred             ------ccceeeeeEEecccc
Q psy1959         264 ------KSLVNKVLEVSGGKY  278 (296)
Q Consensus       264 ------~~~~~k~~~i~g~~~  278 (296)
                            ..++.+++++.+...
T Consensus      1776 ~~~~~~~~~~~~~~~~~g~~l 1796 (2512)
T 2vz8_A         1776 NNHALGMAVFLKNVTFHGILL 1796 (2512)
T ss_dssp             TTCEEEGGGGGGCCEEEECCG
T ss_pred             ccCcccccccccCCcEEEeeH
Confidence                  235567888887653

>1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1

Probab=99.79  E-value=7.2e-19  Score=147.68  Aligned_cols=134  Identities=24%  Similarity=0.346  Sum_probs=108.8

Q ss_pred             CceEECCCCCCHHHHhhhccHHHHHHHHHHHHcCCCCCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHH
Q psy1959         125 NDVFKIPEKMTFEHAASLADSYSTAQIVFSRHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIR  204 (296)
Q Consensus       125 ~~~~~iP~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~  204 (296)
                      +.++++|++++++++|++++++.|||+++.+.+++++|++|+|+|++|++|+++++++ +..|++|+++++++++.+.++
T Consensus         2 ~~~~~~P~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~vlV~Ga~ggiG~~~~~~~-~~~G~~V~~~~~~~~~~~~~~   80 (198)
T 1pqw_A            2 DLVVPIPDTLADNEAATFGVAYLTAWHSLCEVGRLSPGERVLIHSATGGVGMAAVSIA-KMIGARIYTTAGSDAKREMLS   80 (198)
T ss_dssp             ------------CHHHHHHHHHHHHHHHHHTTSCCCTTCEEEETTTTSHHHHHHHHHH-HHHTCEEEEEESSHHHHHHHH
T ss_pred             CceeECCCCCCHHHHHHhhHHHHHHHHHHHHHhCCCCCCEEEEeeCCChHHHHHHHHH-HHcCCEEEEEeCCHHHHHHHH
Confidence            4678999999999999999999999999977889999999999999999999999999 567999999999999999999


Q ss_pred             hcCCcEEEEcCCchhHHHHHHHHhCCCcccEEEECCCCccHHHHHHHhhccCceEEe
Q psy1959         205 QKGAWAALTFTNEKSLVNKVLEVSGGKYANVVFEAVGGEDKTDLIRQKGAWAALTFT  261 (296)
Q Consensus       205 ~~g~~~~~~~~~~~~~~~~i~~~~~~~g~d~vld~~g~~~~~~~~~~lg~~~g~~~~  261 (296)
                      ++|++.+++..+ .++.+.+.+.+.+.++|+++|+.|.+.+..+++++ +++|++..
T Consensus        81 ~~g~~~~~d~~~-~~~~~~~~~~~~~~~~D~vi~~~g~~~~~~~~~~l-~~~G~~v~  135 (198)
T 1pqw_A           81 RLGVEYVGDSRS-VDFADEILELTDGYGVDVVLNSLAGEAIQRGVQIL-APGGRFIE  135 (198)
T ss_dssp             TTCCSEEEETTC-STHHHHHHHHTTTCCEEEEEECCCTHHHHHHHHTE-EEEEEEEE
T ss_pred             HcCCCEEeeCCc-HHHHHHHHHHhCCCCCeEEEECCchHHHHHHHHHh-ccCCEEEE
Confidence            999988888876 67777888877666899999999988999999999 77777643

>1gpj_A Glutamyl-tRNA reductase; tRNA-dependent tetrapyrrole biosynthesis; HET: GMC CIT; 1.95A {Methanopyrus kandleri} SCOP: a.151.1.1 c.2.1.7 d.58.39.1

Probab=98.45  E-value=1.1e-09  Score=101.69  Aligned_cols=172  Identities=16%  Similarity=0.204  Sum_probs=120.7

Q ss_pred             cCCCceeEEEEEEccCCCCCCCCCCCCCCCCCCCEEEE------ec-CCCCCcccceEeeeCCceEECCCCCCHHHHhhh
Q psy1959          70 VPGFEFSGTVIEVADTKSSSTEEDDEEDVLQVGDKVLA------LN-KELLHGFSDQCVVHTNDVFKIPEKMTFEHAASL  142 (296)
Q Consensus        70 ~~G~e~~G~V~~v~~~~~~~~~~g~~v~~~~~Gd~V~~------~~-~~~~g~~~~~~~v~~~~~~~iP~~~~~~~aa~l  142 (296)
                      ..|++.++.|.++          |.+++.+.+|++++.      +. ....|++++|...+...++++|+.++.+.++ .
T Consensus        76 ~~g~~a~~~i~~v----------~~Glds~~vGe~~Il~qvk~~~~~~~~~G~~~~~~~~~~~~a~~~~k~v~~~~~~-~  144 (404)
T 1gpj_A           76 KRGSEAVRHLFRV----------ASGLESMMVGEQEILRQVKKAYDRAARLGTLDEALKIVFRRAINLGKRAREETRI-S  144 (404)
T ss_dssp             EEHHHHHHHHHHH----------HTTTTSSSTTCHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHSST-T
T ss_pred             ecCchHhhhheee----------ccCCCCCcCCcchhHHHHHHHHHHHHHcCCchHHHHHHHHHHhhhhccCcchhhh-c
Confidence            4788999999999          888888999998731      00 0113778888888888888899888777655 3


Q ss_pred             ccHHHHHHHHHHHHc---CCCCCcEEEEEcCCCcHHHHHHHHHHHhCCC-EEEEEeCCcchH-HHHHhcCCcEEEEcCCc
Q psy1959         143 ADSYSTAQIVFSRHA---KLKEKQTVLVTAAGGGLGLAAVDMATKIYKA-KVIGVCNSEDKT-DLIRQKGAWAALTFTNE  217 (296)
Q Consensus       143 ~~~~~ta~~~l~~~~---~~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~-~Vi~~~~~~~~~-~~~~~~g~~~~~~~~~~  217 (296)
                      ..+++++|.++....   .-.+|++|+|+|+ |++|.++++.+ +..|+ +|++++++.++. +.++++|+. .+.+   
T Consensus       145 ~~~~s~a~~av~~a~~~~~~l~g~~VlIiGa-G~iG~~~a~~l-~~~G~~~V~v~~r~~~ra~~la~~~g~~-~~~~---  218 (404)
T 1gpj_A          145 EGAVSIGSAAVELAERELGSLHDKTVLVVGA-GEMGKTVAKSL-VDRGVRAVLVANRTYERAVELARDLGGE-AVRF---  218 (404)
T ss_dssp             CSCCSHHHHHHHHHHHHHSCCTTCEEEEESC-CHHHHHHHHHH-HHHCCSEEEEECSSHHHHHHHHHHHTCE-ECCG---
T ss_pred             CCCccHHHHHHHHHHHHhccccCCEEEEECh-HHHHHHHHHHH-HHCCCCEEEEEeCCHHHHHHHHHHcCCc-eecH---
Confidence            456778887764322   1248999999998 99999999999 56798 999999998886 566778874 2322   


Q ss_pred             hhHHHHHHHHhCCCcccEEEECCCC-ccHH--HHHHH--h--hccCceEEeecc
Q psy1959         218 KSLVNKVLEVSGGKYANVVFEAVGG-EDKT--DLIRQ--K--GAWAALTFTNEK  264 (296)
Q Consensus       218 ~~~~~~i~~~~~~~g~d~vld~~g~-~~~~--~~~~~--l--g~~~g~~~~~~~  264 (296)
                      .++.+.+      .++|++++|++. ..+.  ..++.  +  .+.++.+.++..
T Consensus       219 ~~l~~~l------~~aDvVi~at~~~~~~~~~~~l~~~~lk~r~~~~~v~vdia  266 (404)
T 1gpj_A          219 DELVDHL------ARSDVVVSATAAPHPVIHVDDVREALRKRDRRSPILIIDIA  266 (404)
T ss_dssp             GGHHHHH------HTCSEEEECCSSSSCCBCHHHHHHHHHHCSSCCCEEEEECC
T ss_pred             HhHHHHh------cCCCEEEEccCCCCceecHHHHHHHHHhccCCCCEEEEEcc
Confidence            2333222      278999999987 3332  44554  3  123455555543

>1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A

Probab=98.05  E-value=1e-05  Score=73.64  Aligned_cols=88  Identities=17%  Similarity=0.097  Sum_probs=65.9

Q ss_pred             CcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCcE--EEEcCCchhHHHHHHHHhCCCcccEEEEC
Q psy1959         162 KQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWA--ALTFTNEKSLVNKVLEVSGGKYANVVFEA  239 (296)
Q Consensus       162 g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~~--~~~~~~~~~~~~~i~~~~~~~g~d~vld~  239 (296)
                      +++|+|+|+ |++|+++++.+ +.+|++|+++++++++.+.+++.+...  +++.+. .++.+.+      .++|++++|
T Consensus       167 ~~~VlViGa-GgvG~~aa~~a-~~~Ga~V~v~dr~~~r~~~~~~~~~~~~~~~~~~~-~~~~~~~------~~~DvVI~~  237 (361)
T 1pjc_A          167 PGKVVILGG-GVVGTEAAKMA-VGLGAQVQIFDINVERLSYLETLFGSRVELLYSNS-AEIETAV------AEADLLIGA  237 (361)
T ss_dssp             CCEEEEECC-SHHHHHHHHHH-HHTTCEEEEEESCHHHHHHHHHHHGGGSEEEECCH-HHHHHHH------HTCSEEEEC
T ss_pred             CCEEEEECC-CHHHHHHHHHH-HhCCCEEEEEeCCHHHHHHHHHhhCceeEeeeCCH-HHHHHHH------cCCCEEEEC
Confidence            489999998 99999999999 678999999999999999988775433  333322 3333322      268999999


Q ss_pred             CCCcc-------HHHHHHHhhccCceE
Q psy1959         240 VGGED-------KTDLIRQKGAWAALT  259 (296)
Q Consensus       240 ~g~~~-------~~~~~~~lg~~~g~~  259 (296)
                      ++...       ....++.+ ++++.+
T Consensus       238 ~~~~~~~~~~li~~~~~~~~-~~g~~i  263 (361)
T 1pjc_A          238 VLVPGRRAPILVPASLVEQM-RTGSVI  263 (361)
T ss_dssp             CCCTTSSCCCCBCHHHHTTS-CTTCEE
T ss_pred             CCcCCCCCCeecCHHHHhhC-CCCCEE
Confidence            98632       56678888 666655

>2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus}

Probab=97.92  E-value=6.2e-05  Score=68.67  Aligned_cols=90  Identities=17%  Similarity=0.173  Sum_probs=66.0

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHh-cCCcEEEEcCCchhHHHHHHHHhCCCcccEEEEC
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQ-KGAWAALTFTNEKSLVNKVLEVSGGKYANVVFEA  239 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~~~g~d~vld~  239 (296)
                      ++++|+|+|+ |++|+++++.+ +..|++|+++++++++.+.+++ +|.....+..+..++.+.+      .++|++++|
T Consensus       165 ~~~~V~ViGa-G~iG~~~a~~l-~~~Ga~V~~~d~~~~~~~~~~~~~g~~~~~~~~~~~~l~~~~------~~~DvVi~~  236 (369)
T 2eez_A          165 APASVVILGG-GTVGTNAAKIA-LGMGAQVTILDVNHKRLQYLDDVFGGRVITLTATEANIKKSV------QHADLLIGA  236 (369)
T ss_dssp             CCCEEEEECC-SHHHHHHHHHH-HHTTCEEEEEESCHHHHHHHHHHTTTSEEEEECCHHHHHHHH------HHCSEEEEC
T ss_pred             CCCEEEEECC-CHHHHHHHHHH-HhCCCEEEEEECCHHHHHHHHHhcCceEEEecCCHHHHHHHH------hCCCEEEEC
Confidence            4699999998 99999999999 6789999999999998888776 6766433333313333322      268999999


Q ss_pred             CCCcc-------HHHHHHHhhccCceE
Q psy1959         240 VGGED-------KTDLIRQKGAWAALT  259 (296)
Q Consensus       240 ~g~~~-------~~~~~~~lg~~~g~~  259 (296)
                      ++...       ...+++.+ ++++.+
T Consensus       237 ~g~~~~~~~~li~~~~l~~m-k~gg~i  262 (369)
T 2eez_A          237 VLVPGAKAPKLVTRDMLSLM-KEGAVI  262 (369)
T ss_dssp             CC-------CCSCHHHHTTS-CTTCEE
T ss_pred             CCCCccccchhHHHHHHHhh-cCCCEE
Confidence            99642       56778888 666655

>3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A*

Probab=97.91  E-value=6.5e-05  Score=70.96  Aligned_cols=99  Identities=16%  Similarity=0.078  Sum_probs=75.9

Q ss_pred             HHHHHHHHHHHHcC-CCCCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCcEEEEcCCchhHHHH
Q psy1959         145 SYSTAQIVFSRHAK-LKEKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNK  223 (296)
Q Consensus       145 ~~~ta~~~l~~~~~-~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  223 (296)
                      ...++|.++.+..+ ..+|++|+|.|. |.+|+.+++.+ +.+|++|+++++++++.+.+++.|++. .   +   +.+ 
T Consensus       256 ~~~s~~~g~~r~~~~~l~GktV~IiG~-G~IG~~~A~~l-ka~Ga~Viv~d~~~~~~~~A~~~Ga~~-~---~---l~e-  325 (494)
T 3ce6_A          256 TRHSLIDGINRGTDALIGGKKVLICGY-GDVGKGCAEAM-KGQGARVSVTEIDPINALQAMMEGFDV-V---T---VEE-  325 (494)
T ss_dssp             HHHHHHHHHHHHHCCCCTTCEEEEECC-SHHHHHHHHHH-HHTTCEEEEECSCHHHHHHHHHTTCEE-C---C---HHH-
T ss_pred             hhhhhhHHHHhccCCCCCcCEEEEEcc-CHHHHHHHHHH-HHCCCEEEEEeCCHHHHHHHHHcCCEE-e---c---HHH-
Confidence            44556666644332 679999999997 99999999999 678999999999999988888899852 1   1   112 


Q ss_pred             HHHHhCCCcccEEEECCCC-ccHH-HHHHHhhccCceE
Q psy1959         224 VLEVSGGKYANVVFEAVGG-EDKT-DLIRQKGAWAALT  259 (296)
Q Consensus       224 i~~~~~~~g~d~vld~~g~-~~~~-~~~~~lg~~~g~~  259 (296)
                         ..  .++|++++++|. ..+. ..++.+ ++++.+
T Consensus       326 ---~l--~~aDvVi~atgt~~~i~~~~l~~m-k~ggil  357 (494)
T 3ce6_A          326 ---AI--GDADIVVTATGNKDIIMLEHIKAM-KDHAIL  357 (494)
T ss_dssp             ---HG--GGCSEEEECSSSSCSBCHHHHHHS-CTTCEE
T ss_pred             ---HH--hCCCEEEECCCCHHHHHHHHHHhc-CCCcEE
Confidence               12  378999999998 4455 788889 777766

>2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A*

Probab=97.88  E-value=5.4e-05  Score=69.29  Aligned_cols=90  Identities=23%  Similarity=0.171  Sum_probs=67.2

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHh-cCCcEEEEcCCchhHHHHHHHHhCCCcccEEEEC
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQ-KGAWAALTFTNEKSLVNKVLEVSGGKYANVVFEA  239 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~~~g~d~vld~  239 (296)
                      ++++|+|+|+ |++|+++++.+ +.+|++|++.++++++.+.+++ +|...........++.+.+      .++|++++|
T Consensus       167 ~g~~V~ViG~-G~iG~~~a~~a-~~~Ga~V~~~d~~~~~l~~~~~~~g~~~~~~~~~~~~l~~~l------~~aDvVi~~  238 (377)
T 2vhw_A          167 EPADVVVIGA-GTAGYNAARIA-NGMGATVTVLDINIDKLRQLDAEFCGRIHTRYSSAYELEGAV------KRADLVIGA  238 (377)
T ss_dssp             CCCEEEEECC-SHHHHHHHHHH-HHTTCEEEEEESCHHHHHHHHHHTTTSSEEEECCHHHHHHHH------HHCSEEEEC
T ss_pred             CCCEEEEECC-CHHHHHHHHHH-HhCCCEEEEEeCCHHHHHHHHHhcCCeeEeccCCHHHHHHHH------cCCCEEEEC
Confidence            5899999998 99999999999 6789999999999999888876 6765333322213333322      268999999


Q ss_pred             CCCcc-------HHHHHHHhhccCceE
Q psy1959         240 VGGED-------KTDLIRQKGAWAALT  259 (296)
Q Consensus       240 ~g~~~-------~~~~~~~lg~~~g~~  259 (296)
                      ++.+.       ....++.+ ++++.+
T Consensus       239 ~~~p~~~t~~li~~~~l~~m-k~g~~i  264 (377)
T 2vhw_A          239 VLVPGAKAPKLVSNSLVAHM-KPGAVL  264 (377)
T ss_dssp             CCCTTSCCCCCBCHHHHTTS-CTTCEE
T ss_pred             CCcCCCCCcceecHHHHhcC-CCCcEE
Confidence            98642       56778888 666655

>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus}

Probab=97.75  E-value=0.00046  Score=58.50  Aligned_cols=96  Identities=10%  Similarity=0.018  Sum_probs=69.6

Q ss_pred             HHcCCCCCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhc----CC--cEEEEcCCchhHHHHHHHHh
Q psy1959         155 RHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQK----GA--WAALTFTNEKSLVNKVLEVS  228 (296)
Q Consensus       155 ~~~~~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~----g~--~~~~~~~~~~~~~~~i~~~~  228 (296)
                      ...+++++++||..|+ | .|..+..++ +. +.+|+.++.+++..+.+++.    +.  ...+...+   ..+    ..
T Consensus        85 ~~~~~~~~~~vldiG~-G-~G~~~~~l~-~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d---~~~----~~  153 (248)
T 2yvl_A           85 LKLNLNKEKRVLEFGT-G-SGALLAVLS-EV-AGEVWTFEAVEEFYKTAQKNLKKFNLGKNVKFFNVD---FKD----AE  153 (248)
T ss_dssp             HHTTCCTTCEEEEECC-T-TSHHHHHHH-HH-SSEEEEECSCHHHHHHHHHHHHHTTCCTTEEEECSC---TTT----SC
T ss_pred             HhcCCCCCCEEEEeCC-C-ccHHHHHHH-Hh-CCEEEEEecCHHHHHHHHHHHHHcCCCCcEEEEEcC---hhh----cc
Confidence            6678889999999997 6 599999999 44 88999999999988877653    43  22222222   111    11


Q ss_pred             -CCCcccEEEECCCC--ccHHHHHHHhhccCceEEee
Q psy1959         229 -GGKYANVVFEAVGG--EDKTDLIRQKGAWAALTFTN  262 (296)
Q Consensus       229 -~~~g~d~vld~~g~--~~~~~~~~~lg~~~g~~~~~  262 (296)
                       ...++|+++...+.  ..+..+.+.| +++|.+.+.
T Consensus       154 ~~~~~~D~v~~~~~~~~~~l~~~~~~L-~~gG~l~~~  189 (248)
T 2yvl_A          154 VPEGIFHAAFVDVREPWHYLEKVHKSL-MEGAPVGFL  189 (248)
T ss_dssp             CCTTCBSEEEECSSCGGGGHHHHHHHB-CTTCEEEEE
T ss_pred             cCCCcccEEEECCcCHHHHHHHHHHHc-CCCCEEEEE
Confidence             23579999998876  4788889999 888887543

>1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A*

Probab=97.74  E-value=0.00014  Score=66.68  Aligned_cols=94  Identities=17%  Similarity=0.174  Sum_probs=67.4

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCcEE-EEcCC------------------chhHH
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAA-LTFTN------------------EKSLV  221 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~~~-~~~~~------------------~~~~~  221 (296)
                      ++++|+|+|+ |.+|+++++.+ +.+|++|++.++++++.+.++++|+..+ ++..+                  .....
T Consensus       171 ~g~~V~ViGa-G~iG~~aa~~a-~~~Ga~V~~~d~~~~~~~~~~~~Ga~~~~i~~~~~~~~~~~~~~~~~~s~~~~~~~~  248 (384)
T 1l7d_A          171 PPARVLVFGV-GVAGLQAIATA-KRLGAVVMATDVRAATKEQVESLGGKFITVDDEAMKTAETAGGYAKEMGEEFRKKQA  248 (384)
T ss_dssp             CCCEEEEECC-SHHHHHHHHHH-HHTTCEEEEECSCSTTHHHHHHTTCEECCC-----------------------CCHH
T ss_pred             CCCEEEEECC-CHHHHHHHHHH-HHCCCEEEEEeCCHHHHHHHHHcCCeEEeecccccccccccccchhhcCHHHHhhhH
Confidence            6899999997 99999999999 6789999999999999999988987643 11210                  00012


Q ss_pred             HHHHHHhCCCcccEEEECC---CCcc----HHHHHHHhhccCceE
Q psy1959         222 NKVLEVSGGKYANVVFEAV---GGED----KTDLIRQKGAWAALT  259 (296)
Q Consensus       222 ~~i~~~~~~~g~d~vld~~---g~~~----~~~~~~~lg~~~g~~  259 (296)
                      +.+.+...  ++|++++++   |.+.    ....++.| ++++.+
T Consensus       249 ~~l~~~~~--~aDvVi~~~~~pg~~~~~li~~~~l~~m-k~g~vi  290 (384)
T 1l7d_A          249 EAVLKELV--KTDIAITTALIPGKPAPVLITEEMVTKM-KPGSVI  290 (384)
T ss_dssp             HHHHHHHT--TCSEEEECCCCTTSCCCCCSCHHHHTTS-CTTCEE
T ss_pred             HHHHHHhC--CCCEEEECCccCCCCCCeeeCHHHHhcC-CCCCEE
Confidence            22445443  699999999   6422    26678888 666554

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}

Probab=97.61  E-value=0.00072  Score=50.19  Aligned_cols=84  Identities=11%  Similarity=0.025  Sum_probs=60.1

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCC-CEEEEEeCCcchHHHHHhcCCcEE-EEcCCchhHHHHHHHHhCCCcccEEEE
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYK-AKVIGVCNSEDKTDLIRQKGAWAA-LTFTNEKSLVNKVLEVSGGKYANVVFE  238 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g-~~Vi~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~i~~~~~~~g~d~vld  238 (296)
                      .+.+|+|+|+ |.+|..+++.+ ...| .+|+++++++++.+.+.+.+.... .+..+    .+.+.+..  .++|++|+
T Consensus         4 ~~~~v~I~G~-G~iG~~~~~~l-~~~g~~~v~~~~r~~~~~~~~~~~~~~~~~~d~~~----~~~~~~~~--~~~d~vi~   75 (118)
T 3ic5_A            4 MRWNICVVGA-GKIGQMIAALL-KTSSNYSVTVADHDLAALAVLNRMGVATKQVDAKD----EAGLAKAL--GGFDAVIS   75 (118)
T ss_dssp             TCEEEEEECC-SHHHHHHHHHH-HHCSSEEEEEEESCHHHHHHHHTTTCEEEECCTTC----HHHHHHHT--TTCSEEEE
T ss_pred             CcCeEEEECC-CHHHHHHHHHH-HhCCCceEEEEeCCHHHHHHHHhCCCcEEEecCCC----HHHHHHHH--cCCCEEEE
Confidence            4578999999 99999999988 4578 799999999999888886665432 22222    23444443  37999999


Q ss_pred             CCCCccHHHHHHHh
Q psy1959         239 AVGGEDKTDLIRQK  252 (296)
Q Consensus       239 ~~g~~~~~~~~~~l  252 (296)
                      +++........+..
T Consensus        76 ~~~~~~~~~~~~~~   89 (118)
T 3ic5_A           76 AAPFFLTPIIAKAA   89 (118)
T ss_dssp             CSCGGGHHHHHHHH
T ss_pred             CCCchhhHHHHHHH
Confidence            99875444444444

>1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A*

Probab=97.53  E-value=0.00024  Score=65.54  Aligned_cols=93  Identities=17%  Similarity=0.217  Sum_probs=66.0

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCcEEE-EcC-------------CchhH----HH
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAAL-TFT-------------NEKSL----VN  222 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~~~~-~~~-------------~~~~~----~~  222 (296)
                      ++.+|+|+|+ |.+|+++++.| +.+|++|++.+++.++.+.++++|+..+. +..             . .++    .+
T Consensus       171 ~g~~V~ViGa-G~iG~~aa~~a-~~~Ga~V~v~D~~~~~~~~~~~lGa~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~  247 (401)
T 1x13_A          171 PPAKVMVIGA-GVAGLAAIGAA-NSLGAIVRAFDTRPEVKEQVQSMGAEFLELDFKEEAGSGDGYAKVMS-DAFIKAEME  247 (401)
T ss_dssp             CCCEEEEECC-SHHHHHHHHHH-HHTTCEEEEECSCGGGHHHHHHTTCEECCC--------CCHHHHHHS-HHHHHHHHH
T ss_pred             CCCEEEEECC-CHHHHHHHHHH-HHCCCEEEEEcCCHHHHHHHHHcCCEEEEecccccccccccchhhcc-HHHHHHHHH
Confidence            5889999997 99999999999 67899999999999999999889875431 110             0 111    11


Q ss_pred             HHHHHhCCCcccEEEECC---CC---ccH-HHHHHHhhccCceE
Q psy1959         223 KVLEVSGGKYANVVFEAV---GG---EDK-TDLIRQKGAWAALT  259 (296)
Q Consensus       223 ~i~~~~~~~g~d~vld~~---g~---~~~-~~~~~~lg~~~g~~  259 (296)
                      .+.+..  .++|++++++   |.   ..+ ...++.| ++++.+
T Consensus       248 ~l~e~~--~~aDvVI~~~~~pg~~ap~li~~~~l~~m-k~g~vI  288 (401)
T 1x13_A          248 LFAAQA--KEVDIIVTTALIPGKPAPKLITREMVDSM-KAGSVI  288 (401)
T ss_dssp             HHHHHH--HHCSEEEECCCCTTSCCCCCBCHHHHHTS-CTTCEE
T ss_pred             HHHHHh--CCCCEEEECCccCCCCCCeeeCHHHHhcC-CCCcEE
Confidence            244444  2689999995   32   123 5788888 666655

>3ged_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold, oxidoreductase; 1.70A {Clostridium thermocellum atcc 27405} PDB: 3geg_A*

Probab=97.50  E-value=0.00075  Score=58.00  Aligned_cols=79  Identities=15%  Similarity=0.037  Sum_probs=55.2

Q ss_pred             cEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCcEEE---EcCCchhHHHHHHHHhC-CCcccEEEE
Q psy1959         163 QTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAAL---TFTNEKSLVNKVLEVSG-GKYANVVFE  238 (296)
Q Consensus       163 ~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~~~~---~~~~~~~~~~~i~~~~~-~~g~d~vld  238 (296)
                      ++++|+|+++++|.+.++.+ ...|++|+++++++++.+.+.+.+.....   +..+..+..+.+.+... -.++|++++
T Consensus         3 K~vlVTGas~GIG~aia~~l-a~~Ga~V~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~v~~~~~~~g~iDiLVN   81 (247)
T 3ged_A            3 RGVIVTGGGHGIGKQICLDF-LEAGDKVCFIDIDEKRSADFAKERPNLFYFHGDVADPLTLKKFVEYAMEKLQRIDVLVN   81 (247)
T ss_dssp             CEEEEESTTSHHHHHHHHHH-HHTTCEEEEEESCHHHHHHHHTTCTTEEEEECCTTSHHHHHHHHHHHHHHHSCCCEEEE
T ss_pred             CEEEEecCCCHHHHHHHHHH-HHCCCEEEEEeCCHHHHHHHHHhcCCEEEEEecCCCHHHHHHHHHHHHHHcCCCCEEEE
Confidence            68999999999999977777 45799999999999988887766544332   23332333333332211 136999999


Q ss_pred             CCCC
Q psy1959         239 AVGG  242 (296)
Q Consensus       239 ~~g~  242 (296)
                      +.|.
T Consensus        82 NAG~   85 (247)
T 3ged_A           82 NACR   85 (247)
T ss_dssp             CCCC
T ss_pred             CCCC
Confidence            9974

>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}

Probab=97.38  E-value=0.00054  Score=57.80  Aligned_cols=75  Identities=17%  Similarity=0.185  Sum_probs=55.9

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCcEEEEcCCchhHHHHHHHHhCCCcccEEEECC
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNKVLEVSGGKYANVVFEAV  240 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~g~d~vld~~  240 (296)
                      .+.+|+|+|++|.+|.++++.+ ...|.+|+++++++++.+.+.+.++...+..+- .   +.+.+..+  ++|+++++.
T Consensus        20 ~~~~ilVtGatG~iG~~l~~~L-~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~Dl-~---~~~~~~~~--~~D~vi~~a   92 (236)
T 3e8x_A           20 QGMRVLVVGANGKVARYLLSEL-KNKGHEPVAMVRNEEQGPELRERGASDIVVANL-E---EDFSHAFA--SIDAVVFAA   92 (236)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHH-HHTTCEEEEEESSGGGHHHHHHTTCSEEEECCT-T---SCCGGGGT--TCSEEEECC
T ss_pred             CCCeEEEECCCChHHHHHHHHH-HhCCCeEEEEECChHHHHHHHhCCCceEEEccc-H---HHHHHHHc--CCCEEEECC
Confidence            5789999999999999988888 457999999999999988887766623232221 1   33444442  799999999


Q ss_pred             CC
Q psy1959         241 GG  242 (296)
Q Consensus       241 g~  242 (296)
                      |.
T Consensus        93 g~   94 (236)
T 3e8x_A           93 GS   94 (236)
T ss_dssp             CC
T ss_pred             CC
Confidence            85

>4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli}

Probab=97.38  E-value=0.00095  Score=58.24  Aligned_cols=81  Identities=25%  Similarity=0.248  Sum_probs=56.3

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHH-HhcCCcEE---EEcCCchhHHHHHHHHhC-CCcccE
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLI-RQKGAWAA---LTFTNEKSLVNKVLEVSG-GKYANV  235 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~-~~~g~~~~---~~~~~~~~~~~~i~~~~~-~~g~d~  235 (296)
                      +|+.++|+|+++++|+++++.+ ...|++|+++++++++++.+ ++++....   .+..+..+..+.+.+... -.++|+
T Consensus        28 ~gKvalVTGas~GIG~aiA~~l-a~~Ga~V~i~~r~~~~l~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~G~iDi  106 (273)
T 4fgs_A           28 NAKIAVITGATSGIGLAAAKRF-VAEGARVFITGRRKDVLDAAIAEIGGGAVGIQADSANLAELDRLYEKVKAEAGRIDV  106 (273)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHH-HHTTCEEEEEESCHHHHHHHHHHHCTTCEEEECCTTCHHHHHHHHHHHHHHHSCEEE
T ss_pred             CCCEEEEeCcCCHHHHHHHHHH-HHCCCEEEEEECCHHHHHHHHHHcCCCeEEEEecCCCHHHHHHHHHHHHHHcCCCCE
Confidence            6899999999999999988777 45799999999999887765 45554332   233332333333333211 126999


Q ss_pred             EEECCCC
Q psy1959         236 VFEAVGG  242 (296)
Q Consensus       236 vld~~g~  242 (296)
                      ++++.|.
T Consensus       107 LVNNAG~  113 (273)
T 4fgs_A          107 LFVNAGG  113 (273)
T ss_dssp             EEECCCC
T ss_pred             EEECCCC
Confidence            9999984

>3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris}

Probab=97.37  E-value=0.00063  Score=58.35  Aligned_cols=81  Identities=19%  Similarity=0.131  Sum_probs=55.0

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHh----cCCcEE---EEcCCchhHHHHHHHHhCCCcc
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQ----KGAWAA---LTFTNEKSLVNKVLEVSGGKYA  233 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~----~g~~~~---~~~~~~~~~~~~i~~~~~~~g~  233 (296)
                      .+++++|+|+++++|.+.++.+ ...|++|+++++++++.+.+.+    .+....   .+..+..+..+.+.+......+
T Consensus         6 ~~k~vlVTGas~GIG~aia~~l-~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~g~i   84 (252)
T 3h7a_A            6 RNATVAVIGAGDYIGAEIAKKF-AAEGFTVFAGRRNGEKLAPLVAEIEAAGGRIVARSLDARNEDEVTAFLNAADAHAPL   84 (252)
T ss_dssp             CSCEEEEECCSSHHHHHHHHHH-HHTTCEEEEEESSGGGGHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHHSCE
T ss_pred             CCCEEEEECCCchHHHHHHHHH-HHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECcCCCHHHHHHHHHHHHhhCCc
Confidence            5789999999999999988777 4579999999999887665432    344322   2333323333333333211479


Q ss_pred             cEEEECCCC
Q psy1959         234 NVVFEAVGG  242 (296)
Q Consensus       234 d~vld~~g~  242 (296)
                      |+++++.|.
T Consensus        85 d~lv~nAg~   93 (252)
T 3h7a_A           85 EVTIFNVGA   93 (252)
T ss_dssp             EEEEECCCC
T ss_pred             eEEEECCCc
Confidence            999999984

>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius}

Probab=97.37  E-value=0.0015  Score=56.39  Aligned_cols=80  Identities=24%  Similarity=0.268  Sum_probs=54.9

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHH----HhcCCcEEE---EcCCchhHHHHHHHHhC-CCc
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLI----RQKGAWAAL---TFTNEKSLVNKVLEVSG-GKY  232 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~----~~~g~~~~~---~~~~~~~~~~~i~~~~~-~~g  232 (296)
                      +|+.++|+|+++++|.+.++.+ ...|++|+++++++++.+.+    ++.|.....   +..+..+..+.+.+... -..
T Consensus         6 ~gKvalVTGas~GIG~aiA~~l-a~~Ga~Vv~~~~~~~~~~~~~~~i~~~g~~~~~~~~Dvt~~~~v~~~~~~~~~~~G~   84 (254)
T 4fn4_A            6 KNKVVIVTGAGSGIGRAIAKKF-ALNDSIVVAVELLEDRLNQIVQELRGMGKEVLGVKADVSKKKDVEEFVRRTFETYSR   84 (254)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHH-HHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHHSC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHH-HHcCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence            6899999999999999977776 45799999999998876544    344654432   33332333333333211 126


Q ss_pred             ccEEEECCC
Q psy1959         233 ANVVFEAVG  241 (296)
Q Consensus       233 ~d~vld~~g  241 (296)
                      +|+++++.|
T Consensus        85 iDiLVNNAG   93 (254)
T 4fn4_A           85 IDVLCNNAG   93 (254)
T ss_dssp             CCEEEECCC
T ss_pred             CCEEEECCc
Confidence            999999988

>4b79_A PA4098, probable short-chain dehydrogenase; oxidoreductase, infectious disease, structure-based inhibito; HET: NAD; 1.98A {Pseudomonas aeruginosa PAO1}

Probab=97.36  E-value=0.00029  Score=60.43  Aligned_cols=78  Identities=22%  Similarity=0.246  Sum_probs=53.7

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCcE-EEEcCCchhHHHHHHHHhCCCcccEEEEC
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWA-ALTFTNEKSLVNKVLEVSGGKYANVVFEA  239 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~i~~~~~~~g~d~vld~  239 (296)
                      +|++++|+|+++++|.+.++.+ ...|++|++.++++++.+......... ..+..+ .+..+.+.+..  ..+|+++++
T Consensus        10 ~GK~alVTGas~GIG~aia~~l-a~~Ga~Vv~~~~~~~~~~~~~~~~~~~~~~Dv~~-~~~v~~~~~~~--g~iDiLVNN   85 (242)
T 4b79_A           10 AGQQVLVTGGSSGIGAAIAMQF-AELGAEVVALGLDADGVHAPRHPRIRREELDITD-SQRLQRLFEAL--PRLDVLVNN   85 (242)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHH-HHTTCEEEEEESSTTSTTSCCCTTEEEEECCTTC-HHHHHHHHHHC--SCCSEEEEC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHH-HHCCCEEEEEeCCHHHHhhhhcCCeEEEEecCCC-HHHHHHHHHhc--CCCCEEEEC
Confidence            6999999999999999988777 457999999999888765432221111 123344 33333333433  369999999


Q ss_pred             CCC
Q psy1959         240 VGG  242 (296)
Q Consensus       240 ~g~  242 (296)
                      .|.
T Consensus        86 AGi   88 (242)
T 4b79_A           86 AGI   88 (242)
T ss_dssp             CCC
T ss_pred             CCC
Confidence            984

>2z1n_A Dehydrogenase; reductase, SDR, oxidoreductase; 1.80A {Aeropyrum pernix}

Probab=97.36  E-value=0.00063  Score=58.47  Aligned_cols=81  Identities=17%  Similarity=0.177  Sum_probs=54.4

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHh-c-----CCcE-E--EEcCCchhHHHHHHHHhCCC
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQ-K-----GAWA-A--LTFTNEKSLVNKVLEVSGGK  231 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~-~-----g~~~-~--~~~~~~~~~~~~i~~~~~~~  231 (296)
                      .+++++|+|++|++|.++++.+ ...|++|+++++++++.+.+.+ +     +... .  .+..+..++.+.+.+.....
T Consensus         6 ~~k~vlVTGas~gIG~~ia~~l-~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~   84 (260)
T 2z1n_A            6 QGKLAVVTAGSSGLGFASALEL-ARNGARLLLFSRNREKLEAAASRIASLVSGAQVDIVAGDIREPGDIDRLFEKARDLG   84 (260)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHH-HHTTCEEEEEESCHHHHHHHHHHHHHHSTTCCEEEEECCTTCHHHHHHHHHHHHHTT
T ss_pred             CCCEEEEECCCchHHHHHHHHH-HHCCCEEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEEccCCCHHHHHHHHHHHHHhc
Confidence            5689999999999999988777 4479999999998877654432 1     2122 2  23334234444444443333


Q ss_pred             cccEEEECCCC
Q psy1959         232 YANVVFEAVGG  242 (296)
Q Consensus       232 g~d~vld~~g~  242 (296)
                      ++|+++++.|.
T Consensus        85 gid~lv~~Ag~   95 (260)
T 2z1n_A           85 GADILVYSTGG   95 (260)
T ss_dssp             CCSEEEECCCC
T ss_pred             CCCEEEECCCC
Confidence            49999999983

>4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp}

Probab=97.31  E-value=0.00062  Score=58.81  Aligned_cols=81  Identities=22%  Similarity=0.175  Sum_probs=56.7

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHH----HhcCCcEEE---EcCCchhHHHHHHHHhC-CCc
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLI----RQKGAWAAL---TFTNEKSLVNKVLEVSG-GKY  232 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~----~~~g~~~~~---~~~~~~~~~~~i~~~~~-~~g  232 (296)
                      +|++++|+|+++++|++.++.+ ...|++|++.++++++.+..    ++.|.....   +..+..+..+.+.+... -.+
T Consensus         8 ~gKvalVTGas~GIG~aia~~l-a~~Ga~Vvi~~~~~~~~~~~~~~l~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~G~   86 (255)
T 4g81_D            8 TGKTALVTGSARGLGFAYAEGL-AAAGARVILNDIRATLLAESVDTLTRKGYDAHGVAFDVTDELAIEAAFSKLDAEGIH   86 (255)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHH-HHTTCEEEECCSCHHHHHHHHHHHHHTTCCEEECCCCTTCHHHHHHHHHHHHHTTCC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHH-HHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHHHHCCC
Confidence            6899999999999999987777 45799999999998876544    344554432   33332344444444322 236


Q ss_pred             ccEEEECCCC
Q psy1959         233 ANVVFEAVGG  242 (296)
Q Consensus       233 ~d~vld~~g~  242 (296)
                      +|+++++.|.
T Consensus        87 iDiLVNNAG~   96 (255)
T 4g81_D           87 VDILINNAGI   96 (255)
T ss_dssp             CCEEEECCCC
T ss_pred             CcEEEECCCC
Confidence            9999999984

>3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase, FAT biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia prowazekii} SCOP: c.2.1.0

Probab=97.31  E-value=0.0015  Score=55.57  Aligned_cols=80  Identities=19%  Similarity=0.191  Sum_probs=54.4

Q ss_pred             CCCCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHh-cCCcEEEE---cCCchhHHHHHHHHhCCCccc
Q psy1959         159 LKEKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQ-KGAWAALT---FTNEKSLVNKVLEVSGGKYAN  234 (296)
Q Consensus       159 ~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~-~g~~~~~~---~~~~~~~~~~i~~~~~~~g~d  234 (296)
                      ..++++++|+|++|++|.+.++.+ ...|++|+++++++++.+.+.+ +.....+.   ..+.....+.+.+   -.++|
T Consensus        11 ~~~~k~vlVTGas~gIG~~~a~~l-~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~---~~~id   86 (249)
T 3f9i_A           11 DLTGKTSLITGASSGIGSAIARLL-HKLGSKVIISGSNEEKLKSLGNALKDNYTIEVCNLANKEECSNLISK---TSNLD   86 (249)
T ss_dssp             CCTTCEEEETTTTSHHHHHHHHHH-HHTTCEEEEEESCHHHHHHHHHHHCSSEEEEECCTTSHHHHHHHHHT---CSCCS
T ss_pred             cCCCCEEEEECCCChHHHHHHHHH-HHCCCEEEEEcCCHHHHHHHHHHhccCccEEEcCCCCHHHHHHHHHh---cCCCC
Confidence            357899999999999999987777 4579999999999888776653 33333222   2221222222222   23799


Q ss_pred             EEEECCCC
Q psy1959         235 VVFEAVGG  242 (296)
Q Consensus       235 ~vld~~g~  242 (296)
                      +++++.|.
T Consensus        87 ~li~~Ag~   94 (249)
T 3f9i_A           87 ILVCNAGI   94 (249)
T ss_dssp             EEEECCC-
T ss_pred             EEEECCCC
Confidence            99999984

>3d3w_A L-xylulose reductase; uronate cycle, short-chain dehydrogenase/reductase(SDR) superfamily, glucose metabolism, acetylation, carbohydrate metabolism; HET: NAP; 1.87A {Homo sapiens} PDB: 1wnt_A* 1pr9_A*

Probab=97.28  E-value=0.0016  Score=54.99  Aligned_cols=77  Identities=18%  Similarity=0.236  Sum_probs=52.9

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHh-cCCcEEE--EcCCchhHHHHHHHHhC-CCcccEE
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQ-KGAWAAL--TFTNEKSLVNKVLEVSG-GKYANVV  236 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~-~g~~~~~--~~~~~~~~~~~i~~~~~-~~g~d~v  236 (296)
                      ++++++|+|++|++|.+.++.+ ...|++|+++++++++.+.+.+ ......+  +..+ .   +.+.+... -.++|++
T Consensus         6 ~~k~vlITGasggiG~~~a~~l-~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~D~~~-~---~~~~~~~~~~~~id~v   80 (244)
T 3d3w_A            6 AGRRVLVTGAGKGIGRGTVQAL-HATGARVVAVSRTQADLDSLVRECPGIEPVCVDLGD-W---EATERALGSVGPVDLL   80 (244)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHH-HHTTCEEEEEESCHHHHHHHHHHSTTCEEEECCTTC-H---HHHHHHHTTCCCCCEE
T ss_pred             CCcEEEEECCCcHHHHHHHHHH-HHCCCEEEEEeCCHHHHHHHHHHcCCCCEEEEeCCC-H---HHHHHHHHHcCCCCEE
Confidence            5789999999999999988877 4579999999998887765543 3222233  2233 2   23333332 2368999


Q ss_pred             EECCCC
Q psy1959         237 FEAVGG  242 (296)
Q Consensus       237 ld~~g~  242 (296)
                      +++.|.
T Consensus        81 i~~Ag~   86 (244)
T 3d3w_A           81 VNNAAV   86 (244)
T ss_dssp             EECCCC
T ss_pred             EECCcc
Confidence            999984

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*

Probab=97.26  E-value=0.00095  Score=52.73  Aligned_cols=90  Identities=14%  Similarity=0.178  Sum_probs=61.3

Q ss_pred             cCCCCCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHH-hcCCcEEEEcCCchhHHHHHHHHhCCCcccE
Q psy1959         157 AKLKEKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIR-QKGAWAALTFTNEKSLVNKVLEVSGGKYANV  235 (296)
Q Consensus       157 ~~~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~i~~~~~~~g~d~  235 (296)
                      ....++++|+|.|+ |.+|+.+++.+ +..|.+|+++++++++.+.++ +.|... +..+. .+ .+.+.+. +..++|+
T Consensus        14 ~~~~~~~~v~IiG~-G~iG~~la~~L-~~~g~~V~vid~~~~~~~~~~~~~g~~~-~~~d~-~~-~~~l~~~-~~~~ad~   87 (155)
T 2g1u_A           14 SKKQKSKYIVIFGC-GRLGSLIANLA-SSSGHSVVVVDKNEYAFHRLNSEFSGFT-VVGDA-AE-FETLKEC-GMEKADM   87 (155)
T ss_dssp             ---CCCCEEEEECC-SHHHHHHHHHH-HHTTCEEEEEESCGGGGGGSCTTCCSEE-EESCT-TS-HHHHHTT-TGGGCSE
T ss_pred             hcccCCCcEEEECC-CHHHHHHHHHH-HhCCCeEEEEECCHHHHHHHHhcCCCcE-EEecC-CC-HHHHHHc-CcccCCE
Confidence            34457899999997 99999999999 557999999999999888777 566543 32221 11 1223332 2347999


Q ss_pred             EEECCCCc-cHHHHHHHh
Q psy1959         236 VFEAVGGE-DKTDLIRQK  252 (296)
Q Consensus       236 vld~~g~~-~~~~~~~~l  252 (296)
                      +|.+++.. ....+...+
T Consensus        88 Vi~~~~~~~~~~~~~~~~  105 (155)
T 2g1u_A           88 VFAFTNDDSTNFFISMNA  105 (155)
T ss_dssp             EEECSSCHHHHHHHHHHH
T ss_pred             EEEEeCCcHHHHHHHHHH
Confidence            99999984 444444444

>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium}

Probab=97.26  E-value=0.00028  Score=55.13  Aligned_cols=85  Identities=14%  Similarity=0.130  Sum_probs=58.7

Q ss_pred             HHHHHHHHHHHcCCCCCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHH-HHhcCCcEEEEcCCchhHHHHH
Q psy1959         146 YSTAQIVFSRHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDL-IRQKGAWAALTFTNEKSLVNKV  224 (296)
Q Consensus       146 ~~ta~~~l~~~~~~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~i  224 (296)
                      +++++.++. ......+++++|+|+ |.+|.+.++.+ ...|++|++.++++++.+. +++++.. .....+   +.+.+
T Consensus         6 ~sv~~~a~~-~~~~~~~~~v~iiG~-G~iG~~~a~~l-~~~g~~v~v~~r~~~~~~~~a~~~~~~-~~~~~~---~~~~~   78 (144)
T 3oj0_A            6 VSIPSIVYD-IVRKNGGNKILLVGN-GMLASEIAPYF-SYPQYKVTVAGRNIDHVRAFAEKYEYE-YVLIND---IDSLI   78 (144)
T ss_dssp             CSHHHHHHH-HHHHHCCCEEEEECC-SHHHHHHGGGC-CTTTCEEEEEESCHHHHHHHHHHHTCE-EEECSC---HHHHH
T ss_pred             ccHHHHHHH-HHHhccCCEEEEECC-CHHHHHHHHHH-HhCCCEEEEEcCCHHHHHHHHHHhCCc-eEeecC---HHHHh
Confidence            345555553 333345899999997 99999999988 5578999999999888765 4556643 223322   22222


Q ss_pred             HHHhCCCcccEEEECCCCc
Q psy1959         225 LEVSGGKYANVVFEAVGGE  243 (296)
Q Consensus       225 ~~~~~~~g~d~vld~~g~~  243 (296)
                            .++|+++.+++..
T Consensus        79 ------~~~Divi~at~~~   91 (144)
T 3oj0_A           79 ------KNNDVIITATSSK   91 (144)
T ss_dssp             ------HTCSEEEECSCCS
T ss_pred             ------cCCCEEEEeCCCC
Confidence                  2689999999974

>4hp8_A 2-deoxy-D-gluconate 3-dehydrogenase; enzyme function initiative, EFI, structural genomics, oxidor; HET: NAP; 1.35A {Agrobacterium tumefaciens}

Probab=97.25  E-value=0.00046  Score=59.32  Aligned_cols=80  Identities=20%  Similarity=0.167  Sum_probs=53.8

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcc--hHHHHHhcCCcEEEEcCCchhHHHHHHHHhCCCcccEEEE
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSED--KTDLIRQKGAWAALTFTNEKSLVNKVLEVSGGKYANVVFE  238 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~--~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~g~d~vld  238 (296)
                      +|++++|+|+++++|++.++.+ ...|++|++.++++.  ..+.+++.|.......-+..+ .+.+++.....++|++++
T Consensus         8 ~GKvalVTGas~GIG~aiA~~l-a~~Ga~Vvi~~r~~~~~~~~~~~~~g~~~~~~~~Dv~d-~~~v~~~~~~g~iDiLVN   85 (247)
T 4hp8_A            8 EGRKALVTGANTGLGQAIAVGL-AAAGAEVVCAARRAPDETLDIIAKDGGNASALLIDFAD-PLAAKDSFTDAGFDILVN   85 (247)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHH-HHTTCEEEEEESSCCHHHHHHHHHTTCCEEEEECCTTS-TTTTTTSSTTTCCCEEEE
T ss_pred             CCCEEEEeCcCCHHHHHHHHHH-HHcCCEEEEEeCCcHHHHHHHHHHhCCcEEEEEccCCC-HHHHHHHHHhCCCCEEEE
Confidence            6899999999999999987777 457999999998753  355666677654322211010 112222222347999999


Q ss_pred             CCCC
Q psy1959         239 AVGG  242 (296)
Q Consensus       239 ~~g~  242 (296)
                      +.|.
T Consensus        86 NAGi   89 (247)
T 4hp8_A           86 NAGI   89 (247)
T ss_dssp             CCCC
T ss_pred             CCCC
Confidence            9984

>3rd5_A Mypaa.01249.C; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: EPE; 1.50A {Mycobacterium paratuberculosis}

Probab=97.18  E-value=0.0016  Score=56.92  Aligned_cols=78  Identities=21%  Similarity=0.198  Sum_probs=54.7

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHh-cCCcEEE---EcCCchhHHHHHHHHhCCCcccEE
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQ-KGAWAAL---TFTNEKSLVNKVLEVSGGKYANVV  236 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~-~g~~~~~---~~~~~~~~~~~i~~~~~~~g~d~v  236 (296)
                      +|++++|+|++|++|.++++.+ ...|++|+++++++++.+.+.+ ++....+   +..+..+..+.+.+.   ..+|++
T Consensus        15 ~gk~vlVTGas~gIG~~~a~~L-~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~---~~iD~l   90 (291)
T 3rd5_A           15 AQRTVVITGANSGLGAVTAREL-ARRGATVIMAVRDTRKGEAAARTMAGQVEVRELDLQDLSSVRRFADGV---SGADVL   90 (291)
T ss_dssp             TTCEEEEECCSSHHHHHHHHHH-HHTTCEEEEEESCHHHHHHHHTTSSSEEEEEECCTTCHHHHHHHHHTC---CCEEEE
T ss_pred             CCCEEEEeCCCChHHHHHHHHH-HHCCCEEEEEECCHHHHHHHHHHhcCCeeEEEcCCCCHHHHHHHHHhc---CCCCEE
Confidence            5789999999999999988877 4579999999999888877654 4432222   223322333333222   379999


Q ss_pred             EECCCC
Q psy1959         237 FEAVGG  242 (296)
Q Consensus       237 ld~~g~  242 (296)
                      +++.|.
T Consensus        91 v~nAg~   96 (291)
T 3rd5_A           91 INNAGI   96 (291)
T ss_dssp             EECCCC
T ss_pred             EECCcC
Confidence            999984

>2wsb_A Galactitol dehydrogenase; oxidoreductase, SDR, rossmann fold, tagatose; HET: NAD; 1.25A {Rhodobacter sphaeroides} PDB: 2wdz_A* 3lqf_A*

Probab=97.18  E-value=0.00082  Score=57.21  Aligned_cols=81  Identities=20%  Similarity=0.230  Sum_probs=54.0

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHH-hcCCcE-E---EEcCCchhHHHHHHHHhCCCcccE
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIR-QKGAWA-A---LTFTNEKSLVNKVLEVSGGKYANV  235 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~-~~g~~~-~---~~~~~~~~~~~~i~~~~~~~g~d~  235 (296)
                      .+++++|+|++|++|.+.++.+ ...|++|+++++++++.+.+. +++... .   .+..+..+..+.+.+.....++|+
T Consensus        10 ~~k~vlITGasggiG~~la~~l-~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~id~   88 (254)
T 2wsb_A           10 DGACAAVTGAGSGIGLEICRAF-AASGARLILIDREAAALDRAAQELGAAVAARIVADVTDAEAMTAAAAEAEAVAPVSI   88 (254)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHH-HHTTCEEEEEESCHHHHHHHHHHHGGGEEEEEECCTTCHHHHHHHHHHHHHHSCCCE
T ss_pred             CCCEEEEECCCcHHHHHHHHHH-HHCCCEEEEEeCCHHHHHHHHHHhcccceeEEEEecCCHHHHHHHHHHHHhhCCCcE
Confidence            5789999999999999988877 447999999999888766543 333322 1   233332333333333221136999


Q ss_pred             EEECCCC
Q psy1959         236 VFEAVGG  242 (296)
Q Consensus       236 vld~~g~  242 (296)
                      ++++.|.
T Consensus        89 li~~Ag~   95 (254)
T 2wsb_A           89 LVNSAGI   95 (254)
T ss_dssp             EEECCCC
T ss_pred             EEECCcc
Confidence            9999884

>3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A {Escherichia coli K12} SCOP: c.2.1.0 PDB: 3f1k_A 3e9q_A* 3f5q_A 3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A

Probab=97.17  E-value=0.0012  Score=56.38  Aligned_cols=81  Identities=21%  Similarity=0.224  Sum_probs=53.2

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHh----c-C-CcEE--EEc--CCchhHHHHHHHHh-C
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQ----K-G-AWAA--LTF--TNEKSLVNKVLEVS-G  229 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~----~-g-~~~~--~~~--~~~~~~~~~i~~~~-~  229 (296)
                      .+++++|+|+++++|.+.++.+ ...|++|+++++++++.+.+.+    . + ....  .+.  .+..+..+.+.+.. .
T Consensus        11 ~~k~vlVTGas~gIG~aia~~l-~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~   89 (252)
T 3f1l_A           11 NDRIILVTGASDGIGREAAMTY-ARYGATVILLGRNEEKLRQVASHINEETGRQPQWFILDLLTCTSENCQQLAQRIAVN   89 (252)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHH-HHTTCEEEEEESCHHHHHHHHHHHHHHHSCCCEEEECCTTTCCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCChHHHHHHHHH-HHCCCEEEEEeCCHHHHHHHHHHHHhhcCCCceEEEEecccCCHHHHHHHHHHHHHh
Confidence            5789999999999999988777 4579999999999887665432    1 2 1122  223  23223333333322 1


Q ss_pred             CCcccEEEECCCC
Q psy1959         230 GKYANVVFEAVGG  242 (296)
Q Consensus       230 ~~g~d~vld~~g~  242 (296)
                      ...+|+++++.|.
T Consensus        90 ~g~id~lv~nAg~  102 (252)
T 3f1l_A           90 YPRLDGVLHNAGL  102 (252)
T ss_dssp             CSCCSEEEECCCC
T ss_pred             CCCCCEEEECCcc
Confidence            2369999999884

>3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4; 1.60A {Thermococcus sibiricus} SCOP: c.2.1.0 PDB: 3tn7_A*

Probab=97.17  E-value=0.0019  Score=54.34  Aligned_cols=79  Identities=20%  Similarity=0.159  Sum_probs=52.6

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHH-----hcCCcEEE---EcCCchhHHHHH---HHHhC
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIR-----QKGAWAAL---TFTNEKSLVNKV---LEVSG  229 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~-----~~g~~~~~---~~~~~~~~~~~i---~~~~~  229 (296)
                      ++++++|+|++|++|.+.++.+ ...|++|++++++.++.+.+.     +.+....+   +..+..+..+.+   .+.. 
T Consensus         1 ~~k~vlITGas~gIG~~ia~~l-~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~-   78 (235)
T 3l77_A            1 EMKVAVITGASRGIGEAIARAL-ARDGYALALGARSVDRLEKIAHELMQEQGVEVFYHHLDVSKAESVEEFSKKVLERF-   78 (235)
T ss_dssp             CCCEEEEESCSSHHHHHHHHHH-HHTTCEEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTCHHHHHHHCC-HHHHH-
T ss_pred             CCCEEEEECCCcHHHHHHHHHH-HHCCCEEEEEeCCHHHHHHHHHHHHhhcCCeEEEEEeccCCHHHHHHHHHHHHHhc-
Confidence            3678999999999999988877 457999999999988765543     23443332   333322222222   2222 


Q ss_pred             CCcccEEEECCCC
Q psy1959         230 GKYANVVFEAVGG  242 (296)
Q Consensus       230 ~~g~d~vld~~g~  242 (296)
                       ..+|+++++.|.
T Consensus        79 -g~id~li~~Ag~   90 (235)
T 3l77_A           79 -GDVDVVVANAGL   90 (235)
T ss_dssp             -SSCSEEEECCCC
T ss_pred             -CCCCEEEECCcc
Confidence             269999999884

>3rwb_A TPLDH, pyridoxal 4-dehydrogenase; short chain dehydrogenase/reductase, 4-pyridoxola NAD+, oxidoreductase; HET: NAD 4PL; 1.70A {Mesorhizobium loti} PDB: 3ndr_A* 3nug_A*

Probab=97.16  E-value=0.0025  Score=54.28  Aligned_cols=81  Identities=19%  Similarity=0.129  Sum_probs=55.1

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHH-hcCCcEEE---EcCCchhHHHHHHHHhC-CCcccE
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIR-QKGAWAAL---TFTNEKSLVNKVLEVSG-GKYANV  235 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~-~~g~~~~~---~~~~~~~~~~~i~~~~~-~~g~d~  235 (296)
                      .|++++|+|+++++|.++++.+ ...|++|+++++++++.+.+. +++.....   +..+..+..+.+.+... -.++|+
T Consensus         5 ~gk~vlVTGas~gIG~a~a~~l-~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~id~   83 (247)
T 3rwb_A            5 AGKTALVTGAAQGIGKAIAARL-AADGATVIVSDINAEGAKAAAASIGKKARAIAADISDPGSVKALFAEIQALTGGIDI   83 (247)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHH-HHTTCEEEEECSCHHHHHHHHHHHCTTEEECCCCTTCHHHHHHHHHHHHHHHSCCSE
T ss_pred             CCCEEEEECCCCHHHHHHHHHH-HHCCCEEEEEeCCHHHHHHHHHHhCCceEEEEcCCCCHHHHHHHHHHHHHHCCCCCE
Confidence            5789999999999999988877 457999999999988776554 44544332   33332333333332211 126999


Q ss_pred             EEECCCC
Q psy1959         236 VFEAVGG  242 (296)
Q Consensus       236 vld~~g~  242 (296)
                      ++++.|.
T Consensus        84 lv~nAg~   90 (247)
T 3rwb_A           84 LVNNASI   90 (247)
T ss_dssp             EEECCCC
T ss_pred             EEECCCC
Confidence            9999984

>3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A*

Probab=97.15  E-value=0.0017  Score=54.10  Aligned_cols=87  Identities=7%  Similarity=-0.008  Sum_probs=56.7

Q ss_pred             cEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcc-hHHHHHhcCCcEEEEcCCchhHHHHHHHHhCCCcccEEEECCC
Q psy1959         163 QTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSED-KTDLIRQKGAWAALTFTNEKSLVNKVLEVSGGKYANVVFEAVG  241 (296)
Q Consensus       163 ~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~g~d~vld~~g  241 (296)
                      ++++|+|++|++|.++++.+.+..|++|++++++++ +.+.+.+.+....+..-+..+ .+.+.+...  ++|+++++.|
T Consensus         6 k~vlVtGasg~iG~~~~~~l~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~d-~~~~~~~~~--~~d~vv~~ag   82 (221)
T 3r6d_A            6 XYITILGAAGQIAQXLTATLLTYTDMHITLYGRQLKTRIPPEIIDHERVTVIEGSFQN-PGXLEQAVT--NAEVVFVGAM   82 (221)
T ss_dssp             SEEEEESTTSHHHHHHHHHHHHHCCCEEEEEESSHHHHSCHHHHTSTTEEEEECCTTC-HHHHHHHHT--TCSEEEESCC
T ss_pred             EEEEEEeCCcHHHHHHHHHHHhcCCceEEEEecCccccchhhccCCCceEEEECCCCC-HHHHHHHHc--CCCEEEEcCC
Confidence            469999999999999888883257999999999988 766664333322221111111 234444442  7899999999


Q ss_pred             Ccc--HHHHHHHh
Q psy1959         242 GED--KTDLIRQK  252 (296)
Q Consensus       242 ~~~--~~~~~~~l  252 (296)
                      ...  ....++.+
T Consensus        83 ~~n~~~~~~~~~~   95 (221)
T 3r6d_A           83 ESGSDMASIVKAL   95 (221)
T ss_dssp             CCHHHHHHHHHHH
T ss_pred             CCChhHHHHHHHH
Confidence            632  34445555

>3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str}

Probab=97.15  E-value=0.0011  Score=60.32  Aligned_cols=94  Identities=16%  Similarity=0.103  Sum_probs=65.9

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCcEEEE---------cCC------chhHHHHHH
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALT---------FTN------EKSLVNKVL  225 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~~~~~---------~~~------~~~~~~~i~  225 (296)
                      ++.+|+|+|+ |.+|+.+++.+ +.+|++|++.+++.++++.++++|+..+..         +..      .....+.+.
T Consensus       183 ~~~kV~ViG~-G~iG~~aa~~a-~~lGa~V~v~D~~~~~l~~~~~lGa~~~~l~~~~~~~~gya~~~~~~~~~~~~~~l~  260 (381)
T 3p2y_A          183 KPASALVLGV-GVAGLQALATA-KRLGAKTTGYDVRPEVAEQVRSVGAQWLDLGIDAAGEGGYARELSEAERAQQQQALE  260 (381)
T ss_dssp             CCCEEEEESC-SHHHHHHHHHH-HHHTCEEEEECSSGGGHHHHHHTTCEECCCC-------------CHHHHHHHHHHHH
T ss_pred             CCCEEEEECc-hHHHHHHHHHH-HHCCCEEEEEeCCHHHHHHHHHcCCeEEeccccccccccchhhhhHHHHhhhHHHHH
Confidence            6789999998 99999999999 568999999999999999999998754210         000      001123344


Q ss_pred             HHhCCCcccEEEECCCC-----c--cHHHHHHHhhccCceE
Q psy1959         226 EVSGGKYANVVFEAVGG-----E--DKTDLIRQKGAWAALT  259 (296)
Q Consensus       226 ~~~~~~g~d~vld~~g~-----~--~~~~~~~~lg~~~g~~  259 (296)
                      +..  +.+|++|.++..     +  .....++.+ +++..+
T Consensus       261 e~l--~~aDIVI~tv~iPg~~ap~Lvt~emv~~M-kpGsVI  298 (381)
T 3p2y_A          261 DAI--TKFDIVITTALVPGRPAPRLVTAAAATGM-QPGSVV  298 (381)
T ss_dssp             HHH--TTCSEEEECCCCTTSCCCCCBCHHHHHTS-CTTCEE
T ss_pred             HHH--hcCCEEEECCCCCCcccceeecHHHHhcC-CCCcEE
Confidence            444  479999998632     1  235777777 554443

>1uls_A Putative 3-oxoacyl-acyl carrier protein reductase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.40A {Thermus thermophilus} SCOP: c.2.1.2

Probab=97.15  E-value=0.0011  Score=56.42  Aligned_cols=81  Identities=19%  Similarity=0.192  Sum_probs=54.5

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHh-cCCcEE-EEcCCchhHHHHHHHHhC-CCcccEEE
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQ-KGAWAA-LTFTNEKSLVNKVLEVSG-GKYANVVF  237 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~-~g~~~~-~~~~~~~~~~~~i~~~~~-~~g~d~vl  237 (296)
                      .+++++|+|++|++|.+.++.+ ...|++|+++++++++.+.+.+ ++...+ .+..+..+..+.+.+... -..+|+++
T Consensus         4 ~~k~vlVTGas~giG~~ia~~l-~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~id~lv   82 (245)
T 1uls_A            4 KDKAVLITGAAHGIGRATLELF-AKEGARLVACDIEEGPLREAAEAVGAHPVVMDVADPASVERGFAEALAHLGRLDGVV   82 (245)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHH-HHTTCEEEEEESCHHHHHHHHHTTTCEEEECCTTCHHHHHHHHHHHHHHHSSCCEEE
T ss_pred             CCCEEEEECCCCHHHHHHHHHH-HHCCCEEEEEeCCHHHHHHHHHHcCCEEEEecCCCHHHHHHHHHHHHHHcCCCCEEE
Confidence            4689999999999999988877 4579999999998887766543 453222 233332333333333211 12699999


Q ss_pred             ECCCC
Q psy1959         238 EAVGG  242 (296)
Q Consensus       238 d~~g~  242 (296)
                      ++.|.
T Consensus        83 n~Ag~   87 (245)
T 1uls_A           83 HYAGI   87 (245)
T ss_dssp             ECCCC
T ss_pred             ECCCC
Confidence            99984

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=97.13  E-value=0.002  Score=52.23  Aligned_cols=85  Identities=16%  Similarity=0.160  Sum_probs=61.1

Q ss_pred             CcEEEEEcCCCcHHHHHHHHHHHhC-CCEEEEEeCCcchHHHHHhcCCcEEE-EcCCchhHHHHHHHHhCCCcccEEEEC
Q psy1959         162 KQTVLVTAAGGGLGLAAVDMATKIY-KAKVIGVCNSEDKTDLIRQKGAWAAL-TFTNEKSLVNKVLEVSGGKYANVVFEA  239 (296)
Q Consensus       162 g~~vlI~Ga~g~vG~aa~~la~~~~-g~~Vi~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~i~~~~~~~g~d~vld~  239 (296)
                      +++++|.|. |.+|+.+++.+ +.. |.+|+++++++++.+.+++.|...+. +..+ .   +.+.+.++-.++|+++.+
T Consensus        39 ~~~v~IiG~-G~~G~~~a~~L-~~~~g~~V~vid~~~~~~~~~~~~g~~~~~gd~~~-~---~~l~~~~~~~~ad~vi~~  112 (183)
T 3c85_A           39 HAQVLILGM-GRIGTGAYDEL-RARYGKISLGIEIREEAAQQHRSEGRNVISGDATD-P---DFWERILDTGHVKLVLLA  112 (183)
T ss_dssp             TCSEEEECC-SHHHHHHHHHH-HHHHCSCEEEEESCHHHHHHHHHTTCCEEECCTTC-H---HHHHTBCSCCCCCEEEEC
T ss_pred             CCcEEEECC-CHHHHHHHHHH-HhccCCeEEEEECCHHHHHHHHHCCCCEEEcCCCC-H---HHHHhccCCCCCCEEEEe
Confidence            668999996 99999999998 556 89999999999999999888876443 2222 1   233333234579999999


Q ss_pred             CCCc-cHHHHHHHh
Q psy1959         240 VGGE-DKTDLIRQK  252 (296)
Q Consensus       240 ~g~~-~~~~~~~~l  252 (296)
                      +++. ....+...+
T Consensus       113 ~~~~~~~~~~~~~~  126 (183)
T 3c85_A          113 MPHHQGNQTALEQL  126 (183)
T ss_dssp             CSSHHHHHHHHHHH
T ss_pred             CCChHHHHHHHHHH
Confidence            9983 333344444

>1cyd_A Carbonyl reductase; short-chain dehydrogenase, oxidoreductase; HET: NAP; 1.80A {Mus musculus} SCOP: c.2.1.2

Probab=97.12  E-value=0.0031  Score=53.23  Aligned_cols=76  Identities=18%  Similarity=0.221  Sum_probs=52.3

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHh-c-CCcEE-EEcCCchhHHHHHHHHhC-CCcccEE
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQ-K-GAWAA-LTFTNEKSLVNKVLEVSG-GKYANVV  236 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~-~-g~~~~-~~~~~~~~~~~~i~~~~~-~~g~d~v  236 (296)
                      ++++++|+|++|++|.+.++.+ ...|++|+++++++++.+.+.+ . +...+ .+..+    .+.+.+... -..+|++
T Consensus         6 ~~~~vlVTGasggiG~~~a~~l-~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~D~~~----~~~~~~~~~~~~~id~v   80 (244)
T 1cyd_A            6 SGLRALVTGAGKGIGRDTVKAL-HASGAKVVAVTRTNSDLVSLAKECPGIEPVCVDLGD----WDATEKALGGIGPVDLL   80 (244)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHH-HHTTCEEEEEESCHHHHHHHHHHSTTCEEEECCTTC----HHHHHHHHTTCCCCSEE
T ss_pred             CCCEEEEeCCCchHHHHHHHHH-HHCCCEEEEEeCCHHHHHHHHHhccCCCcEEecCCC----HHHHHHHHHHcCCCCEE
Confidence            5789999999999999988877 4579999999998877765543 2 33221 22233    223333332 2368999


Q ss_pred             EECCC
Q psy1959         237 FEAVG  241 (296)
Q Consensus       237 ld~~g  241 (296)
                      +++.|
T Consensus        81 i~~Ag   85 (244)
T 1cyd_A           81 VNNAA   85 (244)
T ss_dssp             EECCC
T ss_pred             EECCc
Confidence            99998

>2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to pseudotropine; HET: NAP PTO; 1.90A {Datura stramonium} SCOP: c.2.1.2 PDB: 2ae1_A* 1ipe_A* 1ipf_A*

Probab=97.12  E-value=0.0017  Score=55.79  Aligned_cols=81  Identities=19%  Similarity=0.179  Sum_probs=53.6

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHH----hcCCcEE---EEcCCchhHHHHHHHHhCC--C
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIR----QKGAWAA---LTFTNEKSLVNKVLEVSGG--K  231 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~----~~g~~~~---~~~~~~~~~~~~i~~~~~~--~  231 (296)
                      .+++++|+|++|++|.++++.+ ...|++|+++++++++.+.+.    +.+....   .+..+..+..+.+.+....  .
T Consensus         8 ~~k~vlVTGas~giG~~ia~~l-~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~g   86 (260)
T 2ae2_A            8 EGCTALVTGGSRGIGYGIVEEL-ASLGASVYTCSRNQKELNDCLTQWRSKGFKVEASVCDLSSRSERQELMNTVANHFHG   86 (260)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHH-HHTTCEEEEEESCHHHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHHTTT
T ss_pred             CCCEEEEECCCcHHHHHHHHHH-HHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence            5789999999999999988777 447999999999887765432    2343322   2333323333333332211  3


Q ss_pred             cccEEEECCCC
Q psy1959         232 YANVVFEAVGG  242 (296)
Q Consensus       232 g~d~vld~~g~  242 (296)
                      .+|+++++.|.
T Consensus        87 ~id~lv~~Ag~   97 (260)
T 2ae2_A           87 KLNILVNNAGI   97 (260)
T ss_dssp             CCCEEEECCCC
T ss_pred             CCCEEEECCCC
Confidence            69999999983

>4gkb_A 3-oxoacyl-[acyl-carrier protein] reductase; putative sugar dehydrogenase, enzyme function initiative, EF structural genomics; 1.50A {Burkholderia multivorans} PDB: 4glo_A*

Probab=97.11  E-value=0.003  Score=54.55  Aligned_cols=81  Identities=14%  Similarity=0.140  Sum_probs=53.4

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHH---HhcCCcEE---EEcCCchhHHHHHHHHhC-CCcc
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLI---RQKGAWAA---LTFTNEKSLVNKVLEVSG-GKYA  233 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~---~~~g~~~~---~~~~~~~~~~~~i~~~~~-~~g~  233 (296)
                      +|++++|+|+++++|.+.++.+ ...|++|++.++++++.+.+   .+.+....   .+..+..+..+.+.+... -..+
T Consensus         6 ~gKvalVTGas~GIG~aia~~l-a~~Ga~Vv~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~v~~~~~~~G~i   84 (258)
T 4gkb_A            6 QDKVVIVTGGASGIGGAISMRL-AEERAIPVVFARHAPDGAFLDALAQRQPRATYLPVELQDDAQCRDAVAQTIATFGRL   84 (258)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHH-HHTTCEEEEEESSCCCHHHHHHHHHHCTTCEEEECCTTCHHHHHHHHHHHHHHHSCC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHH-HHcCCEEEEEECCcccHHHHHHHHhcCCCEEEEEeecCCHHHHHHHHHHHHHHhCCC
Confidence            6899999999999999977666 34799999999987765444   33343322   233342333333333221 1269


Q ss_pred             cEEEECCCC
Q psy1959         234 NVVFEAVGG  242 (296)
Q Consensus       234 d~vld~~g~  242 (296)
                      |+++++.|.
T Consensus        85 DiLVNnAGi   93 (258)
T 4gkb_A           85 DGLVNNAGV   93 (258)
T ss_dssp             CEEEECCCC
T ss_pred             CEEEECCCC
Confidence            999999984

>4imr_A 3-oxoacyl-(acyl-carrier-protein) reductase; oxidoreductase, nicotinamide adenine dinucleotide phosphate, structural genomics; HET: NAP; 1.96A {Agrobacterium fabrum}

Probab=97.10  E-value=0.0014  Score=56.96  Aligned_cols=81  Identities=16%  Similarity=0.109  Sum_probs=54.4

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHH----hcCCcEE---EEcCCchhHHHHHHHHhCCCcc
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIR----QKGAWAA---LTFTNEKSLVNKVLEVSGGKYA  233 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~----~~g~~~~---~~~~~~~~~~~~i~~~~~~~g~  233 (296)
                      .|++++|+|+++++|.++++.+ ...|++|+++++++++.+.+.    +.+....   .+..+..+..+.+.+......+
T Consensus        32 ~gk~~lVTGas~GIG~aia~~l-a~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~g~i  110 (275)
T 4imr_A           32 RGRTALVTGSSRGIGAAIAEGL-AGAGAHVILHGVKPGSTAAVQQRIIASGGTAQELAGDLSEAGAGTDLIERAEAIAPV  110 (275)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHH-HHTTCEEEEEESSTTTTHHHHHHHHHTTCCEEEEECCTTSTTHHHHHHHHHHHHSCC
T ss_pred             CCCEEEEECCCCHHHHHHHHHH-HHCCCEEEEEcCCHHHHHHHHHHHHhcCCeEEEEEecCCCHHHHHHHHHHHHHhCCC
Confidence            5789999999999999988777 457999999999887765443    2344332   2233323333333333211479


Q ss_pred             cEEEECCCC
Q psy1959         234 NVVFEAVGG  242 (296)
Q Consensus       234 d~vld~~g~  242 (296)
                      |+++++.|.
T Consensus       111 D~lvnnAg~  119 (275)
T 4imr_A          111 DILVINASA  119 (275)
T ss_dssp             CEEEECCCC
T ss_pred             CEEEECCCC
Confidence            999999984

>1hdc_A 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxidoreductase; HET: CBO; 2.20A {Streptomyces exfoliatus} SCOP: c.2.1.2 PDB: 2hsd_A*

Probab=97.10  E-value=0.0011  Score=56.79  Aligned_cols=81  Identities=21%  Similarity=0.148  Sum_probs=54.5

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHH-hcCCcEE---EEcCCchhHHHHHHHHhC-CCcccE
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIR-QKGAWAA---LTFTNEKSLVNKVLEVSG-GKYANV  235 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~-~~g~~~~---~~~~~~~~~~~~i~~~~~-~~g~d~  235 (296)
                      .+++++|+|++|++|.++++.+ ...|++|+++++++++.+.+. +++....   .+..+..++.+.+.+... -.++|+
T Consensus         4 ~~k~vlVTGas~gIG~~ia~~l-~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~iD~   82 (254)
T 1hdc_A            4 SGKTVIITGGARGLGAEAARQA-VAAGARVVLADVLDEEGAATARELGDAARYQHLDVTIEEDWQRVVAYAREEFGSVDG   82 (254)
T ss_dssp             CCSEEEEETTTSHHHHHHHHHH-HHTTCEEEEEESCHHHHHHHHHTTGGGEEEEECCTTCHHHHHHHHHHHHHHHSCCCE
T ss_pred             CCCEEEEECCCcHHHHHHHHHH-HHCCCEEEEEeCCHHHHHHHHHHhCCceeEEEecCCCHHHHHHHHHHHHHHcCCCCE
Confidence            4789999999999999988877 457999999999888776554 3443322   233332333333333211 126999


Q ss_pred             EEECCCC
Q psy1959         236 VFEAVGG  242 (296)
Q Consensus       236 vld~~g~  242 (296)
                      ++++.|.
T Consensus        83 lv~nAg~   89 (254)
T 1hdc_A           83 LVNNAGI   89 (254)
T ss_dssp             EEECCCC
T ss_pred             EEECCCC
Confidence            9999884

>3ai3_A NADPH-sorbose reductase; rossmann-fold, NADPH-dependent reductase, short chain dehydrogenase/reductase, oxidoreductase; HET: NAP SOL SOE; 1.80A {Gluconobacter frateurii} PDB: 3ai2_A* 3ai1_A*

Probab=97.10  E-value=0.0016  Score=55.90  Aligned_cols=81  Identities=16%  Similarity=0.194  Sum_probs=53.2

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHh-c----CCcEE---EEcCCchhHHHHHHHHhC-CC
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQ-K----GAWAA---LTFTNEKSLVNKVLEVSG-GK  231 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~-~----g~~~~---~~~~~~~~~~~~i~~~~~-~~  231 (296)
                      ++++++|+|++|++|.++++.+ ...|++|+++++++++.+.+.+ +    +....   .+..+..+..+.+.+... -.
T Consensus         6 ~~k~vlVTGas~gIG~~ia~~l-~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g   84 (263)
T 3ai3_A            6 SGKVAVITGSSSGIGLAIAEGF-AKEGAHIVLVARQVDRLHEAARSLKEKFGVRVLEVAVDVATPEGVDAVVESVRSSFG   84 (263)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHH-HHTTCEEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEECCCchHHHHHHHHH-HHCCCEEEEEcCCHHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence            4789999999999999988877 4479999999998877654432 1    43322   233332333333332211 12


Q ss_pred             cccEEEECCCC
Q psy1959         232 YANVVFEAVGG  242 (296)
Q Consensus       232 g~d~vld~~g~  242 (296)
                      ++|+++++.|.
T Consensus        85 ~id~lv~~Ag~   95 (263)
T 3ai3_A           85 GADILVNNAGT   95 (263)
T ss_dssp             SCSEEEECCCC
T ss_pred             CCCEEEECCCC
Confidence            69999999984

>4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A

Probab=97.09  E-value=0.0028  Score=54.28  Aligned_cols=81  Identities=16%  Similarity=0.123  Sum_probs=54.7

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHh-cCCcEE---EEcCCchhHHHHHHHHhC-CCcccE
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQ-KGAWAA---LTFTNEKSLVNKVLEVSG-GKYANV  235 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~-~g~~~~---~~~~~~~~~~~~i~~~~~-~~g~d~  235 (296)
                      .|++++|+|+++++|.+.++.+ ...|++|+++++++++.+.+.+ ++....   .+..+..+..+.+.+... -..+|+
T Consensus         7 ~gk~~lVTGas~gIG~a~a~~l-~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~id~   85 (255)
T 4eso_A            7 QGKKAIVIGGTHGMGLATVRRL-VEGGAEVLLTGRNESNIARIREEFGPRVHALRSDIADLNEIAVLGAAAGQTLGAIDL   85 (255)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHH-HHTTCEEEEEESCHHHHHHHHHHHGGGEEEEECCTTCHHHHHHHHHHHHHHHSSEEE
T ss_pred             CCCEEEEECCCCHHHHHHHHHH-HHCCCEEEEEeCCHHHHHHHHHHhCCcceEEEccCCCHHHHHHHHHHHHHHhCCCCE
Confidence            5789999999999999988777 4579999999999888776653 343332   233332233322222211 126999


Q ss_pred             EEECCCC
Q psy1959         236 VFEAVGG  242 (296)
Q Consensus       236 vld~~g~  242 (296)
                      ++++.|.
T Consensus        86 lv~nAg~   92 (255)
T 4eso_A           86 LHINAGV   92 (255)
T ss_dssp             EEECCCC
T ss_pred             EEECCCC
Confidence            9999884

>3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Novosphingobium aromaticivorans DSM12444}

Probab=97.09  E-value=0.0012  Score=58.62  Aligned_cols=80  Identities=19%  Similarity=0.170  Sum_probs=54.2

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHh----cCC--cEE---EEcCCchhHHHHHHHHhC-C
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQ----KGA--WAA---LTFTNEKSLVNKVLEVSG-G  230 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~----~g~--~~~---~~~~~~~~~~~~i~~~~~-~  230 (296)
                      .+++++|+|++|++|.++++.+ ...|++|+++++++++.+.+.+    .+.  ...   .+..+..++.+.+.+... .
T Consensus         7 ~~k~vlVTGas~gIG~~la~~l-~~~G~~Vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~   85 (319)
T 3ioy_A            7 AGRTAFVTGGANGVGIGLVRQL-LNQGCKVAIADIRQDSIDKALATLEAEGSGPEVMGVQLDVASREGFKMAADEVEARF   85 (319)
T ss_dssp             TTCEEEEETTTSTHHHHHHHHH-HHTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred             CCCEEEEcCCchHHHHHHHHHH-HHCCCEEEEEECCHHHHHHHHHHHHhcCCCCeEEEEECCCCCHHHHHHHHHHHHHhC
Confidence            5789999999999999987777 4579999999999887665432    232  222   233342333333333321 1


Q ss_pred             CcccEEEECCC
Q psy1959         231 KYANVVFEAVG  241 (296)
Q Consensus       231 ~g~d~vld~~g  241 (296)
                      ..+|+++++.|
T Consensus        86 g~id~lv~nAg   96 (319)
T 3ioy_A           86 GPVSILCNNAG   96 (319)
T ss_dssp             CCEEEEEECCC
T ss_pred             CCCCEEEECCC
Confidence            37999999998

>1ae1_A Tropinone reductase-I; oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to tropine, short-chain dehydrogenase; HET: NAP; 2.40A {Datura stramonium} SCOP: c.2.1.2

Probab=97.08  E-value=0.002  Score=55.80  Aligned_cols=81  Identities=21%  Similarity=0.211  Sum_probs=54.0

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHH----hcCCcEE---EEcCCchhHHHHHHHHhC--CC
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIR----QKGAWAA---LTFTNEKSLVNKVLEVSG--GK  231 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~----~~g~~~~---~~~~~~~~~~~~i~~~~~--~~  231 (296)
                      .+++++|+|++|++|.++++.+ ...|++|+++++++++.+.+.    +.+....   .+..+..+..+.+.+...  ..
T Consensus        20 ~~k~vlVTGas~gIG~aia~~l-~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~g   98 (273)
T 1ae1_A           20 KGTTALVTGGSKGIGYAIVEEL-AGLGARVYTCSRNEKELDECLEIWREKGLNVEGSVCDLLSRTERDKLMQTVAHVFDG   98 (273)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHH-HHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHTTS
T ss_pred             CCCEEEEECCcchHHHHHHHHH-HHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence            5789999999999999988877 457999999999887665432    2343322   233332333333333221  13


Q ss_pred             cccEEEECCCC
Q psy1959         232 YANVVFEAVGG  242 (296)
Q Consensus       232 g~d~vld~~g~  242 (296)
                      .+|+++++.|.
T Consensus        99 ~id~lv~nAg~  109 (273)
T 1ae1_A           99 KLNILVNNAGV  109 (273)
T ss_dssp             CCCEEEECCCC
T ss_pred             CCcEEEECCCC
Confidence            79999999984

>1iy8_A Levodione reductase; oxidoreductase; HET: NAD; 1.60A {Leifsonia aquatica} SCOP: c.2.1.2

Probab=97.08  E-value=0.0017  Score=56.00  Aligned_cols=81  Identities=21%  Similarity=0.157  Sum_probs=53.3

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHh----c--CCcEE---EEcCCchhHHHHHHHHhC-C
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQ----K--GAWAA---LTFTNEKSLVNKVLEVSG-G  230 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~----~--g~~~~---~~~~~~~~~~~~i~~~~~-~  230 (296)
                      .+++++|+|++|++|.++++.+ ...|++|+++++++++.+.+.+    .  +....   .+..+..+..+.+.+... -
T Consensus        12 ~~k~vlVTGas~gIG~~ia~~l-~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~   90 (267)
T 1iy8_A           12 TDRVVLITGGGSGLGRATAVRL-AAEGAKLSLVDVSSEGLEASKAAVLETAPDAEVLTTVADVSDEAQVEAYVTATTERF   90 (267)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHH-HHTTCEEEEEESCHHHHHHHHHHHHHHCTTCCEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHH-HHCCCEEEEEeCCHHHHHHHHHHHHhhcCCceEEEEEccCCCHHHHHHHHHHHHHHc
Confidence            5789999999999999988777 4479999999998877654432    1  33322   233332333333333211 1


Q ss_pred             CcccEEEECCCC
Q psy1959         231 KYANVVFEAVGG  242 (296)
Q Consensus       231 ~g~d~vld~~g~  242 (296)
                      .++|+++++.|.
T Consensus        91 g~id~lv~nAg~  102 (267)
T 1iy8_A           91 GRIDGFFNNAGI  102 (267)
T ss_dssp             SCCSEEEECCCC
T ss_pred             CCCCEEEECCCc
Confidence            269999999884

>3ppi_A 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, dehydrogenas mycobacterium avium, structural genomics; 2.00A {Mycobacterium avium}

Probab=97.08  E-value=0.0017  Score=56.39  Aligned_cols=79  Identities=20%  Similarity=0.181  Sum_probs=55.0

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHH-hcCCcEE---EEcCCchhHHHHHHHHhCCCcccEE
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIR-QKGAWAA---LTFTNEKSLVNKVLEVSGGKYANVV  236 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~-~~g~~~~---~~~~~~~~~~~~i~~~~~~~g~d~v  236 (296)
                      .+++++|+|+++++|.+.++.+ ...|++|+++++++++.+.+. +++....   .+..+..+..+.+.+...-.++|++
T Consensus        29 ~~k~vlVTGas~GIG~aia~~l-~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~~id~l  107 (281)
T 3ppi_A           29 EGASAIVSGGAGGLGEATVRRL-HADGLGVVIADLAAEKGKALADELGNRAEFVSTNVTSEDSVLAAIEAANQLGRLRYA  107 (281)
T ss_dssp             TTEEEEEETTTSHHHHHHHHHH-HHTTCEEEEEESCHHHHHHHHHHHCTTEEEEECCTTCHHHHHHHHHHHTTSSEEEEE
T ss_pred             CCCEEEEECCCChHHHHHHHHH-HHCCCEEEEEeCChHHHHHHHHHhCCceEEEEcCCCCHHHHHHHHHHHHHhCCCCeE
Confidence            5789999999999999988777 457999999999988877664 3444332   2333424444444444223478999


Q ss_pred             EECC
Q psy1959         237 FEAV  240 (296)
Q Consensus       237 ld~~  240 (296)
                      +.+.
T Consensus       108 v~~a  111 (281)
T 3ppi_A          108 VVAH  111 (281)
T ss_dssp             EECC
T ss_pred             EEcc
Confidence            9983

>4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti}

Probab=97.07  E-value=0.0019  Score=59.30  Aligned_cols=94  Identities=15%  Similarity=0.114  Sum_probs=65.5

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCcEEEE-------------cCC--chh----HH
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALT-------------FTN--EKS----LV  221 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~~~~~-------------~~~--~~~----~~  221 (296)
                      ++.+|+|+|+ |.+|+.+++.+ +.+|++|++.+++.++++.++++|+..+..             +..  .+.    ..
T Consensus       189 ~~~kV~ViG~-G~iG~~aa~~a-~~lGa~V~v~D~~~~~l~~~~~~G~~~~~~~~~~~~d~~~~~~ya~e~s~~~~~~~~  266 (405)
T 4dio_A          189 PAAKIFVMGA-GVAGLQAIATA-RRLGAVVSATDVRPAAKEQVASLGAKFIAVEDEEFKAAETAGGYAKEMSGEYQVKQA  266 (405)
T ss_dssp             CCCEEEEECC-SHHHHHHHHHH-HHTTCEEEEECSSTTHHHHHHHTTCEECCCCC-----------------CHHHHHHH
T ss_pred             CCCEEEEECC-cHHHHHHHHHH-HHCCCEEEEEcCCHHHHHHHHHcCCceeecccccccccccccchhhhcchhhhhhhH
Confidence            6789999998 99999999999 678999999999999999999988753211             100  000    12


Q ss_pred             HHHHHHhCCCcccEEEECCCCc-------cHHHHHHHhhccCceE
Q psy1959         222 NKVLEVSGGKYANVVFEAVGGE-------DKTDLIRQKGAWAALT  259 (296)
Q Consensus       222 ~~i~~~~~~~g~d~vld~~g~~-------~~~~~~~~lg~~~g~~  259 (296)
                      +.+.+..  +++|++|.++..+       .-...++.| +++..+
T Consensus       267 ~~l~e~l--~~aDVVI~tvlipg~~ap~Lvt~emv~~M-k~GsVI  308 (405)
T 4dio_A          267 ALVAEHI--AKQDIVITTALIPGRPAPRLVTREMLDSM-KPGSVV  308 (405)
T ss_dssp             HHHHHHH--HTCSEEEECCCCSSSCCCCCBCHHHHTTS-CTTCEE
T ss_pred             hHHHHHh--cCCCEEEECCcCCCCCCCEEecHHHHhcC-CCCCEE
Confidence            2344443  3799999996421       245677777 555444

>3ak4_A NADH-dependent quinuclidinone reductase; SDR, (R)-3-quinuclidinol, chiral alcohol, oxidoreductase; HET: NAD; 2.00A {Agrobacterium tumefaciens}

Probab=97.07  E-value=0.0014  Score=56.22  Aligned_cols=81  Identities=14%  Similarity=0.021  Sum_probs=53.6

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHh-cCCc-EE--EEcCCchhHHHHHHHHhC-CCcccE
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQ-KGAW-AA--LTFTNEKSLVNKVLEVSG-GKYANV  235 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~-~g~~-~~--~~~~~~~~~~~~i~~~~~-~~g~d~  235 (296)
                      .+++++|+|++|++|.++++.+ ...|++|+++++++++.+.+.+ +... ..  .+..+..++.+.+.+... ..++|+
T Consensus        11 ~~k~vlVTGas~gIG~~ia~~l-~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~d~~~v~~~~~~~~~~~g~iD~   89 (263)
T 3ak4_A           11 SGRKAIVTGGSKGIGAAIARAL-DKAGATVAIADLDVMAAQAVVAGLENGGFAVEVDVTKRASVDAAMQKAIDALGGFDL   89 (263)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHH-HHTTCEEEEEESCHHHHHHHHHTCTTCCEEEECCTTCHHHHHHHHHHHHHHHTCCCE
T ss_pred             CCCEEEEeCCCChHHHHHHHHH-HHCCCEEEEEeCCHHHHHHHHHHHhcCCeEEEEeCCCHHHHHHHHHHHHHHcCCCCE
Confidence            4789999999999999988877 4579999999998887766543 3211 22  233332333333332211 126999


Q ss_pred             EEECCCC
Q psy1959         236 VFEAVGG  242 (296)
Q Consensus       236 vld~~g~  242 (296)
                      ++++.|.
T Consensus        90 lv~~Ag~   96 (263)
T 3ak4_A           90 LCANAGV   96 (263)
T ss_dssp             EEECCCC
T ss_pred             EEECCCc
Confidence            9999883

>3n74_A 3-ketoacyl-(acyl-carrier-protein) reductase; seattle structural genomics center for infectious disease, S brucellosis; 2.20A {Brucella melitensis biovar abortus}

Probab=97.06  E-value=0.0018  Score=55.38  Aligned_cols=81  Identities=20%  Similarity=0.187  Sum_probs=54.8

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHH-hcCCcEE---EEcCCchhHHHHHHHHhC-CCcccE
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIR-QKGAWAA---LTFTNEKSLVNKVLEVSG-GKYANV  235 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~-~~g~~~~---~~~~~~~~~~~~i~~~~~-~~g~d~  235 (296)
                      .+++++|+|+++++|.++++.+ ...|++|+++++++++.+.+. +++....   .+..+..+..+.+.+... ...+|+
T Consensus         8 ~~k~vlITGas~gIG~~~a~~l-~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~id~   86 (261)
T 3n74_A            8 EGKVALITGAGSGFGEGMAKRF-AKGGAKVVIVDRDKAGAERVAGEIGDAALAVAADISKEADVDAAVEAALSKFGKVDI   86 (261)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHH-HHTTCEEEEEESCHHHHHHHHHHHCTTEEEEECCTTSHHHHHHHHHHHHHHHSCCCE
T ss_pred             CCCEEEEECCCchHHHHHHHHH-HHCCCEEEEEcCCHHHHHHHHHHhCCceEEEEecCCCHHHHHHHHHHHHHhcCCCCE
Confidence            5789999999999999987777 457999999999988877664 3444332   233332333333332211 126999


Q ss_pred             EEECCCC
Q psy1959         236 VFEAVGG  242 (296)
Q Consensus       236 vld~~g~  242 (296)
                      ++++.|.
T Consensus        87 li~~Ag~   93 (261)
T 3n74_A           87 LVNNAGI   93 (261)
T ss_dssp             EEECCCC
T ss_pred             EEECCcc
Confidence            9999884

>3r1i_A Short-chain type dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.95A {Mycobacterium marinum}

Probab=97.06  E-value=0.0017  Score=56.53  Aligned_cols=81  Identities=15%  Similarity=0.122  Sum_probs=54.0

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHH----hcCCc-EE--EEcCCchhHHHHHHHHhC-CCc
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIR----QKGAW-AA--LTFTNEKSLVNKVLEVSG-GKY  232 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~----~~g~~-~~--~~~~~~~~~~~~i~~~~~-~~g  232 (296)
                      .+++++|+|+++++|.+.++.+ ...|++|+++++++++.+.+.    +.+.. ..  .+..+..+..+.+.+... -.+
T Consensus        31 ~gk~~lVTGas~GIG~aia~~l-a~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~~g~  109 (276)
T 3r1i_A           31 SGKRALITGASTGIGKKVALAY-AEAGAQVAVAARHSDALQVVADEIAGVGGKALPIRCDVTQPDQVRGMLDQMTGELGG  109 (276)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHH-HHTTCEEEEEESSGGGGHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHH-HHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence            5789999999999999988777 457999999999888766543    23322 22  233342333333333211 126


Q ss_pred             ccEEEECCCC
Q psy1959         233 ANVVFEAVGG  242 (296)
Q Consensus       233 ~d~vld~~g~  242 (296)
                      +|+++++.|.
T Consensus       110 iD~lvnnAg~  119 (276)
T 3r1i_A          110 IDIAVCNAGI  119 (276)
T ss_dssp             CSEEEECCCC
T ss_pred             CCEEEECCCC
Confidence            9999999984

>3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP] reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc; 2.16A {Bacteroides thetaiotaomicron}

Probab=97.05  E-value=0.0018  Score=55.34  Aligned_cols=81  Identities=12%  Similarity=0.152  Sum_probs=53.4

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHh----c--C-C-cEE--EEcCCchhHHHHHHHHhC-
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQ----K--G-A-WAA--LTFTNEKSLVNKVLEVSG-  229 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~----~--g-~-~~~--~~~~~~~~~~~~i~~~~~-  229 (296)
                      .+++++|+|+++++|.+.++.+ ...|++|+++++++++.+.+.+    .  + . ...  .+..+..+..+.+.+... 
T Consensus         6 ~~k~~lVTGas~GIG~aia~~l-~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~   84 (250)
T 3nyw_A            6 QKGLAIITGASQGIGAVIAAGL-ATDGYRVVLIARSKQNLEKVHDEIMRSNKHVQEPIVLPLDITDCTKADTEIKDIHQK   84 (250)
T ss_dssp             CCCEEEEESTTSHHHHHHHHHH-HHHTCEEEEEESCHHHHHHHHHHHHHHCTTSCCCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHH-HHCCCEEEEEECCHHHHHHHHHHHHHhccccCcceEEeccCCCHHHHHHHHHHHHHh
Confidence            5789999999999999988777 3469999999999887665532    1  2 1 122  233342333333333211 


Q ss_pred             CCcccEEEECCCC
Q psy1959         230 GKYANVVFEAVGG  242 (296)
Q Consensus       230 ~~g~d~vld~~g~  242 (296)
                      ...+|+++++.|.
T Consensus        85 ~g~iD~lvnnAg~   97 (250)
T 3nyw_A           85 YGAVDILVNAAAM   97 (250)
T ss_dssp             HCCEEEEEECCCC
T ss_pred             cCCCCEEEECCCc
Confidence            1269999999984

>3gem_A Short chain dehydrogenase; structural genomics, APC65077, oxidoreductase, PSI-2, protein structure initiative; 1.83A {Pseudomonas syringae PV}

Probab=97.05  E-value=0.0014  Score=56.43  Aligned_cols=81  Identities=20%  Similarity=0.167  Sum_probs=54.0

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchH-HHHHhcCCcEE-EEcCCchhHHHHHHHHhC-CCcccEEE
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKT-DLIRQKGAWAA-LTFTNEKSLVNKVLEVSG-GKYANVVF  237 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~-~~~~~~g~~~~-~~~~~~~~~~~~i~~~~~-~~g~d~vl  237 (296)
                      .+++++|+|++|++|.++++.+ ...|++|+++++++++. +.+++.+...+ .+..+..+..+.+.+... ...+|+++
T Consensus        26 ~~k~vlVTGas~gIG~aia~~l-~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iD~lv  104 (260)
T 3gem_A           26 SSAPILITGASQRVGLHCALRL-LEHGHRVIISYRTEHASVTELRQAGAVALYGDFSCETGIMAFIDLLKTQTSSLRAVV  104 (260)
T ss_dssp             -CCCEEESSTTSHHHHHHHHHH-HHTTCCEEEEESSCCHHHHHHHHHTCEEEECCTTSHHHHHHHHHHHHHHCSCCSEEE
T ss_pred             CCCEEEEECCCCHHHHHHHHHH-HHCCCEEEEEeCChHHHHHHHHhcCCeEEECCCCCHHHHHHHHHHHHHhcCCCCEEE
Confidence            4688999999999999988777 44799999999987764 34455564332 233442333333333321 23799999


Q ss_pred             ECCCC
Q psy1959         238 EAVGG  242 (296)
Q Consensus       238 d~~g~  242 (296)
                      ++.|.
T Consensus       105 ~nAg~  109 (260)
T 3gem_A          105 HNASE  109 (260)
T ss_dssp             ECCCC
T ss_pred             ECCCc
Confidence            99983

>2ew8_A (S)-1-phenylethanol dehydrogenase; transferase; 2.10A {Azoarcus SP} SCOP: c.2.1.2 PDB: 2ewm_A*

Probab=97.05  E-value=0.0027  Score=54.06  Aligned_cols=81  Identities=12%  Similarity=0.115  Sum_probs=53.4

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCc-chHH-HHHhcCCcEE---EEcCCchhHHHHHHHHhC-CCccc
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSE-DKTD-LIRQKGAWAA---LTFTNEKSLVNKVLEVSG-GKYAN  234 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~-~~~~-~~~~~g~~~~---~~~~~~~~~~~~i~~~~~-~~g~d  234 (296)
                      .+++++|+|++|++|.++++.+ ...|++|+++++++ ++.+ .+++.+....   .+..+..+..+.+.+... -.++|
T Consensus         6 ~~k~vlVTGas~gIG~~ia~~l-~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~id   84 (249)
T 2ew8_A            6 KDKLAVITGGANGIGRAIAERF-AVEGADIAIADLVPAPEAEAAIRNLGRRVLTVKCDVSQPGDVEAFGKQVISTFGRCD   84 (249)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHH-HHTTCEEEEEESSCCHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHSCCC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHH-HHCCCEEEEEcCCchhHHHHHHHhcCCcEEEEEeecCCHHHHHHHHHHHHHHcCCCC
Confidence            5789999999999999988877 44799999999887 5554 3445554332   233332333333332211 12699


Q ss_pred             EEEECCCC
Q psy1959         235 VVFEAVGG  242 (296)
Q Consensus       235 ~vld~~g~  242 (296)
                      +++++.|.
T Consensus        85 ~lv~nAg~   92 (249)
T 2ew8_A           85 ILVNNAGI   92 (249)
T ss_dssp             EEEECCCC
T ss_pred             EEEECCCC
Confidence            99999984

>4dry_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.50A {Sinorhizobium meliloti}

Probab=97.04  E-value=0.00074  Score=58.96  Aligned_cols=81  Identities=17%  Similarity=0.160  Sum_probs=52.4

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHh-c----CCc-EE--EEcCCchhHHHHHHHHhC-CC
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQ-K----GAW-AA--LTFTNEKSLVNKVLEVSG-GK  231 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~-~----g~~-~~--~~~~~~~~~~~~i~~~~~-~~  231 (296)
                      .|++++|+|++|++|.++++.+ ...|++|+++++++++.+.+.+ +    +.. ..  .+..+..+..+.+.+... -.
T Consensus        32 ~gk~~lVTGas~GIG~aia~~l-a~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g  110 (281)
T 4dry_A           32 EGRIALVTGGGTGVGRGIAQAL-SAEGYSVVITGRRPDVLDAAAGEIGGRTGNIVRAVVCDVGDPDQVAALFAAVRAEFA  110 (281)
T ss_dssp             --CEEEETTTTSHHHHHHHHHH-HHTTCEEEEEESCHHHHHHHHHHHHHHHSSCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEeCCCCHHHHHHHHHH-HHCCCEEEEEECCHHHHHHHHHHHHhcCCCeEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence            6789999999999999988777 4579999999999887665432 1    221 22  233442333333333211 12


Q ss_pred             cccEEEECCCC
Q psy1959         232 YANVVFEAVGG  242 (296)
Q Consensus       232 g~d~vld~~g~  242 (296)
                      .+|+++++.|.
T Consensus       111 ~iD~lvnnAG~  121 (281)
T 4dry_A          111 RLDLLVNNAGS  121 (281)
T ss_dssp             CCSEEEECCCC
T ss_pred             CCCEEEECCCC
Confidence            69999999984

>3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp}

Probab=97.04  E-value=0.0018  Score=56.99  Aligned_cols=81  Identities=19%  Similarity=0.132  Sum_probs=54.5

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHH----hcCCcEE---EEcCCchhHHHHHHHHhC-CCc
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIR----QKGAWAA---LTFTNEKSLVNKVLEVSG-GKY  232 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~----~~g~~~~---~~~~~~~~~~~~i~~~~~-~~g  232 (296)
                      .|++++|+|++|++|.+.++.+ ...|++|+++++++++.+.+.    +.+....   .+..+..+..+.+.+... ..+
T Consensus        30 ~gk~vlVTGas~gIG~~la~~l-~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~  108 (301)
T 3tjr_A           30 DGRAAVVTGGASGIGLATATEF-ARRGARLVLSDVDQPALEQAVNGLRGQGFDAHGVVCDVRHLDEMVRLADEAFRLLGG  108 (301)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHH-HHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHSS
T ss_pred             CCCEEEEeCCCCHHHHHHHHHH-HHCCCEEEEEECCHHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHhCCC
Confidence            6789999999999999987777 457999999999988766543    2344332   233332333333333211 127


Q ss_pred             ccEEEECCCC
Q psy1959         233 ANVVFEAVGG  242 (296)
Q Consensus       233 ~d~vld~~g~  242 (296)
                      +|+++++.|.
T Consensus       109 id~lvnnAg~  118 (301)
T 3tjr_A          109 VDVVFSNAGI  118 (301)
T ss_dssp             CSEEEECCCC
T ss_pred             CCEEEECCCc
Confidence            9999999983

>4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding, structural genomics, PSI-biology; HET: MSE; 2.10A {Sinorhizobium meliloti} PDB: 1k2w_A

Probab=97.04  E-value=0.0019  Score=55.38  Aligned_cols=81  Identities=15%  Similarity=0.118  Sum_probs=55.0

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHH-hcCCcEE---EEcCCchhHHHHHHHHhC-CCcccE
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIR-QKGAWAA---LTFTNEKSLVNKVLEVSG-GKYANV  235 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~-~~g~~~~---~~~~~~~~~~~~i~~~~~-~~g~d~  235 (296)
                      .+++++|+|++|++|.++++.+ ...|++|++++++.++.+.+. +++....   .+..+..+..+.+.+... -.++|+
T Consensus         7 ~~k~vlVTGas~gIG~~ia~~l-~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~id~   85 (259)
T 4e6p_A            7 EGKSALITGSARGIGRAFAEAY-VREGATVAIADIDIERARQAAAEIGPAAYAVQMDVTRQDSIDAAIAATVEHAGGLDI   85 (259)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHH-HHTTCEEEEEESCHHHHHHHHHHHCTTEEEEECCTTCHHHHHHHHHHHHHHSSSCCE
T ss_pred             CCCEEEEECCCcHHHHHHHHHH-HHCCCEEEEEeCCHHHHHHHHHHhCCCceEEEeeCCCHHHHHHHHHHHHHHcCCCCE
Confidence            5789999999999999987777 447999999999888776554 3443332   233332333333333321 226999


Q ss_pred             EEECCCC
Q psy1959         236 VFEAVGG  242 (296)
Q Consensus       236 vld~~g~  242 (296)
                      ++++.|.
T Consensus        86 lv~~Ag~   92 (259)
T 4e6p_A           86 LVNNAAL   92 (259)
T ss_dssp             EEECCCC
T ss_pred             EEECCCc
Confidence            9999984

>2jah_A Clavulanic acid dehydrogenase; short-chain dehydrogenase/reductase, lactamase inhibitor, AN biosynthesis, NADPH, oxidoreductase; HET: MSE NDP; 1.80A {Streptomyces clavuligerus} PDB: 2jap_A*

Probab=97.03  E-value=0.0025  Score=54.27  Aligned_cols=81  Identities=17%  Similarity=0.166  Sum_probs=53.4

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHH----hcCCcEE---EEcCCchhHHHHHHHHhC-CCc
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIR----QKGAWAA---LTFTNEKSLVNKVLEVSG-GKY  232 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~----~~g~~~~---~~~~~~~~~~~~i~~~~~-~~g  232 (296)
                      .+++++|+|++|++|.++++.+ ...|++|+++++++++.+.+.    +.+....   .+..+..+..+.+.+... -.+
T Consensus         6 ~~k~~lVTGas~gIG~aia~~l-~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~g~   84 (247)
T 2jah_A            6 QGKVALITGASSGIGEATARAL-AAEGAAVAIAARRVEKLRALGDELTAAGAKVHVLELDVADRQGVDAAVASTVEALGG   84 (247)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHH-HHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CCCEEEEECCCCHHHHHHHHHH-HHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence            4789999999999999988777 447999999999887765443    2243322   233332333333332211 126


Q ss_pred             ccEEEECCCC
Q psy1959         233 ANVVFEAVGG  242 (296)
Q Consensus       233 ~d~vld~~g~  242 (296)
                      +|+++++.|.
T Consensus        85 id~lv~nAg~   94 (247)
T 2jah_A           85 LDILVNNAGI   94 (247)
T ss_dssp             CSEEEECCCC
T ss_pred             CCEEEECCCC
Confidence            9999999883

>3op4_A 3-oxoacyl-[acyl-carrier protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase; HET: MSE NAP; 1.60A {Vibrio cholerae o1 biovar el tor} SCOP: c.2.1.2 PDB: 3rsh_A* 3rro_A* 4i08_A* 3tzk_A 3tzc_A* 3u09_A 3tzh_A 1q7b_A* 1i01_A* 1q7c_A* 2cf2_E

Probab=97.03  E-value=0.00098  Score=56.95  Aligned_cols=81  Identities=28%  Similarity=0.336  Sum_probs=54.6

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHh-cCCcE---EEEcCCchhHHHHHHHHhC-CCcccE
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQ-KGAWA---ALTFTNEKSLVNKVLEVSG-GKYANV  235 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~-~g~~~---~~~~~~~~~~~~~i~~~~~-~~g~d~  235 (296)
                      .|++++|+|+++++|.+.++.+ ...|++|+++++++++.+.+.+ ++...   ..+..+..+..+.+.+... -.++|+
T Consensus         8 ~gk~~lVTGas~gIG~a~a~~l-~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~   86 (248)
T 3op4_A            8 EGKVALVTGASRGIGKAIAELL-AERGAKVIGTATSESGAQAISDYLGDNGKGMALNVTNPESIEAVLKAITDEFGGVDI   86 (248)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHH-HHTTCEEEEEESSHHHHHHHHHHHGGGEEEEECCTTCHHHHHHHHHHHHHHHCCCSE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHH-HHCCCEEEEEeCCHHHHHHHHHHhcccceEEEEeCCCHHHHHHHHHHHHHHcCCCCE
Confidence            5789999999999999988777 4579999999999887766543 33221   1333442333333333211 126999


Q ss_pred             EEECCCC
Q psy1959         236 VFEAVGG  242 (296)
Q Consensus       236 vld~~g~  242 (296)
                      ++++.|.
T Consensus        87 lv~nAg~   93 (248)
T 3op4_A           87 LVNNAGI   93 (248)
T ss_dssp             EEECCCC
T ss_pred             EEECCCC
Confidence            9999984

>1yo6_A Putative carbonyl reductase sniffer; tyrosine-dependent oxidoreductase (SDR family), structural genomics, PSI; 2.60A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=97.03  E-value=0.0018  Score=54.64  Aligned_cols=81  Identities=26%  Similarity=0.311  Sum_probs=55.0

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCC--CEEEEEeCCcchHHHHHhc-CCcEE---EEcCCchhHHHHHHHH---hCCC
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYK--AKVIGVCNSEDKTDLIRQK-GAWAA---LTFTNEKSLVNKVLEV---SGGK  231 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g--~~Vi~~~~~~~~~~~~~~~-g~~~~---~~~~~~~~~~~~i~~~---~~~~  231 (296)
                      .+++++|+|++|++|.++++.+ ...|  ++|++++++.++.+.+++. +....   .+..+..+..+.+.+.   .+..
T Consensus         2 ~~k~vlItGasggiG~~la~~l-~~~g~~~~V~~~~r~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~~   80 (250)
T 1yo6_A            2 SPGSVVVTGANRGIGLGLVQQL-VKDKNIRHIIATARDVEKATELKSIKDSRVHVLPLTVTCDKSLDTFVSKVGEIVGSD   80 (250)
T ss_dssp             CCSEEEESSCSSHHHHHHHHHH-HTCTTCCEEEEEESSGGGCHHHHTCCCTTEEEEECCTTCHHHHHHHHHHHHHHHGGG
T ss_pred             CCCEEEEecCCchHHHHHHHHH-HhcCCCcEEEEEecCHHHHHHHHhccCCceEEEEeecCCHHHHHHHHHHHHHhcCCC
Confidence            3678999999999999988877 4578  9999999998888777765 32222   2233322333333322   2212


Q ss_pred             cccEEEECCCC
Q psy1959         232 YANVVFEAVGG  242 (296)
Q Consensus       232 g~d~vld~~g~  242 (296)
                      .+|++|++.|.
T Consensus        81 ~id~li~~Ag~   91 (250)
T 1yo6_A           81 GLSLLINNAGV   91 (250)
T ss_dssp             CCCEEEECCCC
T ss_pred             CCcEEEECCcc
Confidence            69999999874

>4dqx_A Probable oxidoreductase protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.00A {Rhizobium etli}

Probab=97.02  E-value=0.0019  Score=56.17  Aligned_cols=81  Identities=20%  Similarity=0.231  Sum_probs=54.8

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHH-hcCCcEE---EEcCCchhHHHHHHHHhC-CCcccE
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIR-QKGAWAA---LTFTNEKSLVNKVLEVSG-GKYANV  235 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~-~~g~~~~---~~~~~~~~~~~~i~~~~~-~~g~d~  235 (296)
                      .+++++|+|+++++|.++++.+ ...|++|+++++++++.+.+. +.+....   .+..+..+..+.+.+... -.++|+
T Consensus        26 ~~k~vlVTGas~GIG~aia~~l-~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~  104 (277)
T 4dqx_A           26 NQRVCIVTGGGSGIGRATAELF-AKNGAYVVVADVNEDAAVRVANEIGSKAFGVRVDVSSAKDAESMVEKTTAKWGRVDV  104 (277)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHH-HHTTCEEEEEESSHHHHHHHHHHHCTTEEEEECCTTCHHHHHHHHHHHHHHHSCCCE
T ss_pred             CCCEEEEECCCcHHHHHHHHHH-HHCCCEEEEEeCCHHHHHHHHHHhCCceEEEEecCCCHHHHHHHHHHHHHHcCCCCE
Confidence            5789999999999999988777 457999999999988776654 3444332   233332333333333211 126999


Q ss_pred             EEECCCC
Q psy1959         236 VFEAVGG  242 (296)
Q Consensus       236 vld~~g~  242 (296)
                      ++++.|.
T Consensus       105 lv~nAg~  111 (277)
T 4dqx_A          105 LVNNAGF  111 (277)
T ss_dssp             EEECCCC
T ss_pred             EEECCCc
Confidence            9999983

>4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A

Probab=97.02  E-value=0.005  Score=52.87  Aligned_cols=81  Identities=9%  Similarity=0.155  Sum_probs=52.8

Q ss_pred             CCcEEEEEcCCC--cHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHh----cCC-c-EE--EEcCCchhHHHHHHHHhC-
Q psy1959         161 EKQTVLVTAAGG--GLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQ----KGA-W-AA--LTFTNEKSLVNKVLEVSG-  229 (296)
Q Consensus       161 ~g~~vlI~Ga~g--~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~----~g~-~-~~--~~~~~~~~~~~~i~~~~~-  229 (296)
                      +|++++|+|++|  ++|++.++.+ ...|++|+++++++++.+.+.+    .+. . ..  .+..+..+..+.+.+... 
T Consensus         5 ~gK~alVTGaa~~~GIG~aiA~~l-a~~Ga~Vvi~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~   83 (256)
T 4fs3_A            5 ENKTYVIMGIANKRSIAFGVAKVL-DQLGAKLVFTYRKERSRKELEKLLEQLNQPEAHLYQIDVQSDEEVINGFEQIGKD   83 (256)
T ss_dssp             TTCEEEEECCCSTTCHHHHHHHHH-HHTTCEEEEEESSGGGHHHHHHHHGGGTCSSCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCchHHHHHHHHH-HHCCCEEEEEECCHHHHHHHHHHHHhcCCCcEEEEEccCCCHHHHHHHHHHHHHH
Confidence            689999999876  8999977766 4479999999999887665543    332 2 22  233332333333332211 


Q ss_pred             CCcccEEEECCCC
Q psy1959         230 GKYANVVFEAVGG  242 (296)
Q Consensus       230 ~~g~d~vld~~g~  242 (296)
                      -..+|+++++.|.
T Consensus        84 ~G~iD~lvnnAg~   96 (256)
T 4fs3_A           84 VGNIDGVYHSIAF   96 (256)
T ss_dssp             HCCCSEEEECCCC
T ss_pred             hCCCCEEEecccc
Confidence            1269999999883

>3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp}

Probab=97.01  E-value=0.002  Score=54.85  Aligned_cols=81  Identities=16%  Similarity=0.153  Sum_probs=53.7

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHh----cCCcEE---EEcCCchhHHHHHHHHhC-CCc
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQ----KGAWAA---LTFTNEKSLVNKVLEVSG-GKY  232 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~----~g~~~~---~~~~~~~~~~~~i~~~~~-~~g  232 (296)
                      .+++++|+|+++++|.+.++.+ ...|++|+++++++++.+.+.+    .+....   .+..+..+..+.+.+... ...
T Consensus         8 ~~k~vlITGas~giG~~~a~~l-~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~   86 (253)
T 3qiv_A            8 ENKVGIVTGSGGGIGQAYAEAL-AREGAAVVVADINAEAAEAVAKQIVADGGTAISVAVDVSDPESAKAMADRTLAEFGG   86 (253)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHH-HHTTCEEEEEESCHHHHHHHHHHHHHTTCEEEEEECCTTSHHHHHHHHHHHHHHHSC
T ss_pred             CCCEEEEECCCChHHHHHHHHH-HHCCCEEEEEcCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence            5789999999999999987777 4579999999999887665532    243322   223332333333332211 126


Q ss_pred             ccEEEECCCC
Q psy1959         233 ANVVFEAVGG  242 (296)
Q Consensus       233 ~d~vld~~g~  242 (296)
                      +|+++++.|.
T Consensus        87 id~li~~Ag~   96 (253)
T 3qiv_A           87 IDYLVNNAAI   96 (253)
T ss_dssp             CCEEEECCCC
T ss_pred             CCEEEECCCc
Confidence            9999999874

>3p19_A BFPVVD8, putative blue fluorescent protein; rossmann-fold, oxidoreductase; HET: NAP; 2.05A {Vibrio vulnificus}

Probab=96.99  E-value=0.00068  Score=58.68  Aligned_cols=81  Identities=12%  Similarity=0.149  Sum_probs=52.4

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCcE-EEEcCCchhHHHHHHHHhC-CCcccEEEE
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWA-ALTFTNEKSLVNKVLEVSG-GKYANVVFE  238 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~i~~~~~-~~g~d~vld  238 (296)
                      .+++++|+|++|++|.++++.+ ...|++|+++++++++.+.+....... ..+..+..+..+.+.+... -.++|++++
T Consensus        15 ~~k~vlVTGas~gIG~aia~~l-~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~lvn   93 (266)
T 3p19_A           15 MKKLVVITGASSGIGEAIARRF-SEEGHPLLLLARRVERLKALNLPNTLCAQVDVTDKYTFDTAITRAEKIYGPADAIVN   93 (266)
T ss_dssp             CCCEEEEESTTSHHHHHHHHHH-HHTTCCEEEEESCHHHHHTTCCTTEEEEECCTTCHHHHHHHHHHHHHHHCSEEEEEE
T ss_pred             CCCEEEEECCCCHHHHHHHHHH-HHCCCEEEEEECCHHHHHHhhcCCceEEEecCCCHHHHHHHHHHHHHHCCCCCEEEE
Confidence            4689999999999999988777 457999999999877665443222111 1233332333333332211 127999999


Q ss_pred             CCCC
Q psy1959         239 AVGG  242 (296)
Q Consensus       239 ~~g~  242 (296)
                      +.|.
T Consensus        94 nAg~   97 (266)
T 3p19_A           94 NAGM   97 (266)
T ss_dssp             CCCC
T ss_pred             CCCc
Confidence            9984

>3imf_A Short chain dehydrogenase; structural genomics, infectious D center for structural genomics of infectious diseases, oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus anthracis str}

Probab=96.99  E-value=0.0017  Score=55.70  Aligned_cols=80  Identities=10%  Similarity=0.161  Sum_probs=53.9

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHh----cCCcEE---EEcCCchhHHHHHHHHhC-CCc
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQ----KGAWAA---LTFTNEKSLVNKVLEVSG-GKY  232 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~----~g~~~~---~~~~~~~~~~~~i~~~~~-~~g  232 (296)
                      .+++++|+|+++++|.++++.+ ...|++|+++++++++.+.+.+    .+....   .+..+..+..+.+.+... ..+
T Consensus         5 ~~k~vlVTGas~gIG~aia~~l-~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~   83 (257)
T 3imf_A            5 KEKVVIITGGSSGMGKGMATRF-AKEGARVVITGRTKEKLEEAKLEIEQFPGQILTVQMDVRNTDDIQKMIEQIDEKFGR   83 (257)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHH-HHTTCEEEEEESCHHHHHHHHHHHCCSTTCEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CCCEEEEECCCCHHHHHHHHHH-HHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence            5789999999999999988777 4579999999999888766543    232222   233332333333333211 126


Q ss_pred             ccEEEECCC
Q psy1959         233 ANVVFEAVG  241 (296)
Q Consensus       233 ~d~vld~~g  241 (296)
                      +|+++++.|
T Consensus        84 id~lv~nAg   92 (257)
T 3imf_A           84 IDILINNAA   92 (257)
T ss_dssp             CCEEEECCC
T ss_pred             CCEEEECCC
Confidence            999999998

>1vl8_A Gluconate 5-dehydrogenase; TM0441, structural genomics, JCSG structure initiative, PSI, joint center for structural GENO oxidoreductase; HET: NAP; 2.07A {Thermotoga maritima} SCOP: c.2.1.2

Probab=96.99  E-value=0.0022  Score=55.33  Aligned_cols=81  Identities=16%  Similarity=0.124  Sum_probs=53.5

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHH-----hcCCcEE---EEcCCchhHHHHHHHHhC-CC
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIR-----QKGAWAA---LTFTNEKSLVNKVLEVSG-GK  231 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~-----~~g~~~~---~~~~~~~~~~~~i~~~~~-~~  231 (296)
                      .+++++|+|++|++|.++++.+ ...|++|+++++++++.+.+.     +.+....   .+..+..++.+.+.+... -.
T Consensus        20 ~~k~~lVTGas~gIG~~ia~~l-~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g   98 (267)
T 1vl8_A           20 RGRVALVTGGSRGLGFGIAQGL-AEAGCSVVVASRNLEEASEAAQKLTEKYGVETMAFRCDVSNYEEVKKLLEAVKEKFG   98 (267)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHH-HHTTCEEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEECCCCHHHHHHHHHH-HHCCCEEEEEeCCHHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence            5789999999999999988877 457999999999887665432     2244332   233332333333332211 12


Q ss_pred             cccEEEECCCC
Q psy1959         232 YANVVFEAVGG  242 (296)
Q Consensus       232 g~d~vld~~g~  242 (296)
                      ++|+++++.|.
T Consensus        99 ~iD~lvnnAg~  109 (267)
T 1vl8_A           99 KLDTVVNAAGI  109 (267)
T ss_dssp             CCCEEEECCCC
T ss_pred             CCCEEEECCCc
Confidence            69999999884

>3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5}

Probab=96.99  E-value=0.0021  Score=55.19  Aligned_cols=81  Identities=19%  Similarity=0.212  Sum_probs=53.9

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHH----hcCCcEE---EEcCCchhHHHHHHHHhC-CCc
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIR----QKGAWAA---LTFTNEKSLVNKVLEVSG-GKY  232 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~----~~g~~~~---~~~~~~~~~~~~i~~~~~-~~g  232 (296)
                      .+++++|+|++|++|.+.++.+ ...|++|+++++++++.+.+.    +.+....   .+..+..+..+.+.+... ...
T Consensus        28 ~~k~vlITGas~gIG~~la~~l-~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~  106 (262)
T 3rkr_A           28 SGQVAVVTGASRGIGAAIARKL-GSLGARVVLTARDVEKLRAVEREIVAAGGEAESHACDLSHSDAIAAFATGVLAAHGR  106 (262)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHH-HHTTCEEEEEESCHHHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CCCEEEEECCCChHHHHHHHHH-HHCCCEEEEEECCHHHHHHHHHHHHHhCCceeEEEecCCCHHHHHHHHHHHHHhcCC
Confidence            5789999999999999988777 447999999999988766543    2343322   233332333333333211 126


Q ss_pred             ccEEEECCCC
Q psy1959         233 ANVVFEAVGG  242 (296)
Q Consensus       233 ~d~vld~~g~  242 (296)
                      +|+++++.|.
T Consensus       107 id~lv~~Ag~  116 (262)
T 3rkr_A          107 CDVLVNNAGV  116 (262)
T ss_dssp             CSEEEECCCC
T ss_pred             CCEEEECCCc
Confidence            9999999884

>3grp_A 3-oxoacyl-(acyl carrierprotein) reductase; structural genomics, oxidoreductase, S structural genomics center for infectious disease, ssgcid; 2.09A {Bartonella henselae} PDB: 3enn_A 3emk_A

Probab=96.98  E-value=0.0023  Score=55.27  Aligned_cols=81  Identities=22%  Similarity=0.160  Sum_probs=55.3

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHH-hcCCcEEE---EcCCchhHHHHHHHHhC-CCcccE
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIR-QKGAWAAL---TFTNEKSLVNKVLEVSG-GKYANV  235 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~-~~g~~~~~---~~~~~~~~~~~i~~~~~-~~g~d~  235 (296)
                      .+++++|+|++|++|.++++.+ ...|++|+++++++++.+.+. +++.....   +..+..+..+.+.+... ..++|+
T Consensus        26 ~gk~vlVTGas~gIG~aia~~l-a~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~  104 (266)
T 3grp_A           26 TGRKALVTGATGGIGEAIARCF-HAQGAIVGLHGTREDKLKEIAADLGKDVFVFSANLSDRKSIKQLAEVAEREMEGIDI  104 (266)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHH-HHTTCEEEEEESCHHHHHHHHHHHCSSEEEEECCTTSHHHHHHHHHHHHHHHTSCCE
T ss_pred             CCCEEEEeCCCcHHHHHHHHHH-HHCCCEEEEEeCCHHHHHHHHHHhCCceEEEEeecCCHHHHHHHHHHHHHHcCCCCE
Confidence            5789999999999999988777 457999999999988876654 45544332   23332333333332211 127999


Q ss_pred             EEECCCC
Q psy1959         236 VFEAVGG  242 (296)
Q Consensus       236 vld~~g~  242 (296)
                      ++++.|.
T Consensus       105 lvnnAg~  111 (266)
T 3grp_A          105 LVNNAGI  111 (266)
T ss_dssp             EEECCCC
T ss_pred             EEECCCC
Confidence            9999984

>3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.08A {Sinorhizobium meliloti}

Probab=96.98  E-value=0.0017  Score=56.15  Aligned_cols=81  Identities=20%  Similarity=0.252  Sum_probs=54.0

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHH----hcCCcEE---EEcCCchhHHHHHHHHhC-CCc
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIR----QKGAWAA---LTFTNEKSLVNKVLEVSG-GKY  232 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~----~~g~~~~---~~~~~~~~~~~~i~~~~~-~~g  232 (296)
                      .+++++|+|+++++|.+.++.+ ...|++|+++++++++.+.+.    +.+....   .+..+..+..+.+.+... -..
T Consensus         3 ~~k~~lVTGas~GIG~aia~~l-a~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~   81 (264)
T 3tfo_A            3 MDKVILITGASGGIGEGIAREL-GVAGAKILLGARRQARIEAIATEIRDAGGTALAQVLDVTDRHSVAAFAQAAVDTWGR   81 (264)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHH-HHTTCEEEEEESSHHHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CCCEEEEeCCccHHHHHHHHHH-HHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence            4689999999999999988777 457999999999988766543    2344332   233332333333332211 126


Q ss_pred             ccEEEECCCC
Q psy1959         233 ANVVFEAVGG  242 (296)
Q Consensus       233 ~d~vld~~g~  242 (296)
                      +|+++++.|.
T Consensus        82 iD~lVnnAG~   91 (264)
T 3tfo_A           82 IDVLVNNAGV   91 (264)
T ss_dssp             CCEEEECCCC
T ss_pred             CCEEEECCCC
Confidence            9999999984

>1yde_A Retinal dehydrogenase/reductase 3; oxidoreductase, structural genomics, structural genomics CON SGC; 2.40A {Homo sapiens} SCOP: c.2.1.2

Probab=96.98  E-value=0.0023  Score=55.34  Aligned_cols=81  Identities=21%  Similarity=0.172  Sum_probs=53.7

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHh-cCCcEEE--EcCCchhHHHHHHHHhC-CCcccEE
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQ-KGAWAAL--TFTNEKSLVNKVLEVSG-GKYANVV  236 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~-~g~~~~~--~~~~~~~~~~~i~~~~~-~~g~d~v  236 (296)
                      .+++++|+|++|++|.++++.+ ...|++|+++++++++.+.+.+ +.....+  +..+..+..+.+.+... -.++|++
T Consensus         8 ~~k~vlVTGas~gIG~~ia~~l-~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~l   86 (270)
T 1yde_A            8 AGKVVVVTGGGRGIGAGIVRAF-VNSGARVVICDKDESGGRALEQELPGAVFILCDVTQEDDVKTLVSETIRRFGRLDCV   86 (270)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHH-HHTTCEEEEEESCHHHHHHHHHHCTTEEEEECCTTSHHHHHHHHHHHHHHHSCCCEE
T ss_pred             CCCEEEEECCCcHHHHHHHHHH-HHCCCEEEEEeCCHHHHHHHHHHhcCCeEEEcCCCCHHHHHHHHHHHHHHcCCCCEE
Confidence            5789999999999999988877 4579999999998887766543 3222222  33332333333332211 1269999


Q ss_pred             EECCCC
Q psy1959         237 FEAVGG  242 (296)
Q Consensus       237 ld~~g~  242 (296)
                      +++.|.
T Consensus        87 v~nAg~   92 (270)
T 1yde_A           87 VNNAGH   92 (270)
T ss_dssp             EECCCC
T ss_pred             EECCCC
Confidence            999874

>3l6e_A Oxidoreductase, short-chain dehydrogenase/reducta; structural genomics, PSI-2, protein structure initiative; 2.30A {Aeromonas hydrophila subsp} SCOP: c.2.1.0

Probab=96.98  E-value=0.0017  Score=55.00  Aligned_cols=80  Identities=16%  Similarity=0.133  Sum_probs=53.1

Q ss_pred             CcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHh-cCCcEE---EEcCCchhHHHHHHHHhC-CCcccEE
Q psy1959         162 KQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQ-KGAWAA---LTFTNEKSLVNKVLEVSG-GKYANVV  236 (296)
Q Consensus       162 g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~-~g~~~~---~~~~~~~~~~~~i~~~~~-~~g~d~v  236 (296)
                      +++++|+|+++++|.+.++.+ ...|++|+++++++++.+.+.+ ++....   .+..+..+..+.+.+... ...+|++
T Consensus         3 ~k~vlVTGas~GIG~a~a~~l-~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~id~l   81 (235)
T 3l6e_A            3 LGHIIVTGAGSGLGRALTIGL-VERGHQVSMMGRRYQRLQQQELLLGNAVIGIVADLAHHEDVDVAFAAAVEWGGLPELV   81 (235)
T ss_dssp             CCEEEEESTTSHHHHHHHHHH-HHTTCEEEEEESCHHHHHHHHHHHGGGEEEEECCTTSHHHHHHHHHHHHHHHCSCSEE
T ss_pred             CCEEEEECCCCHHHHHHHHHH-HHCCCEEEEEECCHHHHHHHHHHhcCCceEEECCCCCHHHHHHHHHHHHHhcCCCcEE
Confidence            578999999999999987777 4479999999999888776543 332221   233332333333333211 1269999


Q ss_pred             EECCCC
Q psy1959         237 FEAVGG  242 (296)
Q Consensus       237 ld~~g~  242 (296)
                      +++.|.
T Consensus        82 vnnAg~   87 (235)
T 3l6e_A           82 LHCAGT   87 (235)
T ss_dssp             EEECCC
T ss_pred             EECCCC
Confidence            999884

>3tzq_B Short-chain type dehydrogenase/reductase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; 2.50A {Mycobacterium marinum} SCOP: c.2.1.0

Probab=96.98  E-value=0.002  Score=55.77  Aligned_cols=81  Identities=21%  Similarity=0.152  Sum_probs=54.8

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHH-hcCCcEE---EEcCCchhHHHHHHHHhC-CCcccE
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIR-QKGAWAA---LTFTNEKSLVNKVLEVSG-GKYANV  235 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~-~~g~~~~---~~~~~~~~~~~~i~~~~~-~~g~d~  235 (296)
                      .+++++|+|+++++|.++++.+ ...|++|+++++++++.+.+. +++....   .+..+..+..+.+.+... -..+|+
T Consensus        10 ~~k~vlVTGas~gIG~aia~~l-~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~id~   88 (271)
T 3tzq_B           10 ENKVAIITGACGGIGLETSRVL-ARAGARVVLADLPETDLAGAAASVGRGAVHHVVDLTNEVSVRALIDFTIDTFGRLDI   88 (271)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHH-HHTTCEEEEEECTTSCHHHHHHHHCTTCEEEECCTTCHHHHHHHHHHHHHHHSCCCE
T ss_pred             CCCEEEEECCCcHHHHHHHHHH-HHCCCEEEEEcCCHHHHHHHHHHhCCCeEEEECCCCCHHHHHHHHHHHHHHcCCCCE
Confidence            5789999999999999988777 457999999999988876654 3443322   233342333333332211 126999


Q ss_pred             EEECCCC
Q psy1959         236 VFEAVGG  242 (296)
Q Consensus       236 vld~~g~  242 (296)
                      ++++.|.
T Consensus        89 lv~nAg~   95 (271)
T 3tzq_B           89 VDNNAAH   95 (271)
T ss_dssp             EEECCCC
T ss_pred             EEECCCC
Confidence            9999884

>3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} SCOP: c.2.1.2

Probab=96.98  E-value=0.0037  Score=52.99  Aligned_cols=81  Identities=22%  Similarity=0.329  Sum_probs=55.0

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHH----hcCCcEE---EEcCCchhHHHHHHHHh-CCCc
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIR----QKGAWAA---LTFTNEKSLVNKVLEVS-GGKY  232 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~----~~g~~~~---~~~~~~~~~~~~i~~~~-~~~g  232 (296)
                      .+++++|+|++|++|.+.++.+ ...|++|+++++++++.+.+.    +.+....   .+..+..+..+.+.+.. ....
T Consensus         4 ~~k~vlITGas~gIG~~~a~~l-~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   82 (247)
T 3lyl_A            4 NEKVALVTGASRGIGFEVAHAL-ASKGATVVGTATSQASAEKFENSMKEKGFKARGLVLNISDIESIQNFFAEIKAENLA   82 (247)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHH-HHTTCEEEEEESSHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHTTCC
T ss_pred             CCCEEEEECCCChHHHHHHHHH-HHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHHcCC
Confidence            4789999999999999987777 457999999999888765543    3344332   23333233444444332 2236


Q ss_pred             ccEEEECCCC
Q psy1959         233 ANVVFEAVGG  242 (296)
Q Consensus       233 ~d~vld~~g~  242 (296)
                      +|+++++.|.
T Consensus        83 id~li~~Ag~   92 (247)
T 3lyl_A           83 IDILVNNAGI   92 (247)
T ss_dssp             CSEEEECCCC
T ss_pred             CCEEEECCCC
Confidence            9999999984

>4egf_A L-xylulose reductase; structural genomics, ssgcid, seattle structural genomics CEN infectious disease, oxidoreductase; 2.30A {Mycobacterium smegmatis}

Probab=96.97  E-value=0.0039  Score=53.74  Aligned_cols=81  Identities=14%  Similarity=0.124  Sum_probs=54.1

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHh-----cCCcEE---EEcCCchhHHHHHHHHhC-CC
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQ-----KGAWAA---LTFTNEKSLVNKVLEVSG-GK  231 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~-----~g~~~~---~~~~~~~~~~~~i~~~~~-~~  231 (296)
                      .+++++|+|+++++|.++++.+ ...|++|+++++++++.+.+.+     .+....   .+..+..+..+.+.+... -.
T Consensus        19 ~~k~vlVTGas~gIG~aia~~l-~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g   97 (266)
T 4egf_A           19 DGKRALITGATKGIGADIARAF-AAAGARLVLSGRDVSELDAARRALGEQFGTDVHTVAIDLAEPDAPAELARRAAEAFG   97 (266)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHH-HHTTCEEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTSTTHHHHHHHHHHHHHT
T ss_pred             CCCEEEEeCCCcHHHHHHHHHH-HHCCCEEEEEeCCHHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHHcC
Confidence            5789999999999999988777 4579999999998887655432     243332   233332333333333211 12


Q ss_pred             cccEEEECCCC
Q psy1959         232 YANVVFEAVGG  242 (296)
Q Consensus       232 g~d~vld~~g~  242 (296)
                      ++|+++++.|.
T Consensus        98 ~id~lv~nAg~  108 (266)
T 4egf_A           98 GLDVLVNNAGI  108 (266)
T ss_dssp             SCSEEEEECCC
T ss_pred             CCCEEEECCCc
Confidence            69999999884

>1xq1_A Putative tropinone reducatse; structural genomics, protein structure initiative, CESG, AT1 reductively methylated protein; 2.10A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2q45_A

Probab=96.97  E-value=0.0021  Score=55.12  Aligned_cols=81  Identities=21%  Similarity=0.214  Sum_probs=52.9

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHH----hcCCcEEE---EcCCchhHHHHHHHHhC--CC
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIR----QKGAWAAL---TFTNEKSLVNKVLEVSG--GK  231 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~----~~g~~~~~---~~~~~~~~~~~i~~~~~--~~  231 (296)
                      .+++++|+|++|++|.++++.+ ...|++|+++++++++.+.+.    +.+.....   +..+..+..+.+.+...  +.
T Consensus        13 ~~k~vlITGasggiG~~la~~l-~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   91 (266)
T 1xq1_A           13 KAKTVLVTGGTKGIGHAIVEEF-AGFGAVIHTCARNEYELNECLSKWQKKGFQVTGSVCDASLRPEREKLMQTVSSMFGG   91 (266)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHH-HHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHHTT
T ss_pred             CCCEEEEECCCCHHHHHHHHHH-HHCCCEEEEEeCCHHHHHHHHHHHHhcCCeeEEEECCCCCHHHHHHHHHHHHHHhCC
Confidence            5789999999999999988877 447999999999877665432    23433222   22332233333332211  13


Q ss_pred             cccEEEECCCC
Q psy1959         232 YANVVFEAVGG  242 (296)
Q Consensus       232 g~d~vld~~g~  242 (296)
                      ++|+++++.|.
T Consensus        92 ~id~li~~Ag~  102 (266)
T 1xq1_A           92 KLDILINNLGA  102 (266)
T ss_dssp             CCSEEEEECCC
T ss_pred             CCcEEEECCCC
Confidence            79999999884

>2ag5_A DHRS6, dehydrogenase/reductase (SDR family) member 6; protein-CO-factor complex, structural genomics, structural G consortium, SGC, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: c.2.1.2

Probab=96.97  E-value=0.0025  Score=54.20  Aligned_cols=78  Identities=24%  Similarity=0.274  Sum_probs=52.3

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCcEE--EEcCCchhHHHHHHHHhCCCcccEEEE
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAA--LTFTNEKSLVNKVLEVSGGKYANVVFE  238 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~~~--~~~~~~~~~~~~i~~~~~~~g~d~vld  238 (296)
                      .+++++|+|++|++|.+.++.+ ...|++|+++++++++.+.+.++.....  .+..+ .+..+.+.+..  .++|++++
T Consensus         5 ~~k~vlVTGas~gIG~~ia~~l-~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~--~~id~lv~   80 (246)
T 2ag5_A            5 DGKVIILTAAAQGIGQAAALAF-AREGAKVIATDINESKLQELEKYPGIQTRVLDVTK-KKQIDQFANEV--ERLDVLFN   80 (246)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHH-HHTTCEEEEEESCHHHHGGGGGSTTEEEEECCTTC-HHHHHHHHHHC--SCCSEEEE
T ss_pred             CCCEEEEeCCCcHHHHHHHHHH-HHCCCEEEEEECCHHHHHHHHhccCceEEEeeCCC-HHHHHHHHHHh--CCCCEEEE
Confidence            4789999999999999988777 4579999999998877655443321122  23333 22222333322  37999999


Q ss_pred             CCCC
Q psy1959         239 AVGG  242 (296)
Q Consensus       239 ~~g~  242 (296)
                      +.|.
T Consensus        81 ~Ag~   84 (246)
T 2ag5_A           81 VAGF   84 (246)
T ss_dssp             CCCC
T ss_pred             CCcc
Confidence            9884

>3kvo_A Hydroxysteroid dehydrogenase-like protein 2; HSDL2, human hydroxysteroid dehydrogenase like 2, SDHL2, STR genomics, structural genomics consortium; HET: NAP; 2.25A {Homo sapiens}

Probab=96.96  E-value=0.0025  Score=57.38  Aligned_cols=81  Identities=17%  Similarity=0.172  Sum_probs=53.5

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcch-----------HHHHHhcCCcEE---EEcCCchhHHHHHHH
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDK-----------TDLIRQKGAWAA---LTFTNEKSLVNKVLE  226 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~-----------~~~~~~~g~~~~---~~~~~~~~~~~~i~~  226 (296)
                      .|++++|+|+++++|.++++.+ ...|++|+++++++++           .+.+++.+....   .+..+..+..+.+.+
T Consensus        44 ~gk~vlVTGas~GIG~aia~~L-a~~Ga~Vvl~~r~~~~~~~l~~~l~~~~~~~~~~g~~~~~~~~Dv~d~~~v~~~~~~  122 (346)
T 3kvo_A           44 AGCTVFITGASRGIGKAIALKA-AKDGANIVIAAKTAQPHPKLLGTIYTAAEEIEAVGGKALPCIVDVRDEQQISAAVEK  122 (346)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHH-HTTTCEEEEEESCCSCCSSSCCCHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHH
T ss_pred             CCCEEEEeCCChHHHHHHHHHH-HHCCCEEEEEECChhhhhhhHHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHH
Confidence            5899999999999999988777 4579999999998764           233344454332   233342333333333


Q ss_pred             HhC-CCcccEEEECCCC
Q psy1959         227 VSG-GKYANVVFEAVGG  242 (296)
Q Consensus       227 ~~~-~~g~d~vld~~g~  242 (296)
                      ... -.++|+++++.|.
T Consensus       123 ~~~~~g~iDilVnnAG~  139 (346)
T 3kvo_A          123 AIKKFGGIDILVNNASA  139 (346)
T ss_dssp             HHHHHSCCCEEEECCCC
T ss_pred             HHHHcCCCCEEEECCCC
Confidence            211 1279999999984

>1xkq_A Short-chain reductase family member (5D234); parrallel beta-sheet of seven strands in the order 3214567; HET: NDP; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=96.95  E-value=0.0013  Score=57.21  Aligned_cols=81  Identities=19%  Similarity=0.189  Sum_probs=53.1

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHh----cCC---cEE---EEcCCchhHHHHHHHHhC-
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQ----KGA---WAA---LTFTNEKSLVNKVLEVSG-  229 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~----~g~---~~~---~~~~~~~~~~~~i~~~~~-  229 (296)
                      .+++++|+|++|++|.++++.+ ...|++|+++++++++.+.+.+    .+.   ...   .+..+..+..+.+.+... 
T Consensus         5 ~~k~vlVTGas~gIG~~ia~~l-~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~   83 (280)
T 1xkq_A            5 SNKTVIITGSSNGIGRTTAILF-AQEGANVTITGRSSERLEETRQIILKSGVSEKQVNSVVADVTTEDGQDQIINSTLKQ   83 (280)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHH-HHTTCEEEEEESCHHHHHHHHHHHHTTTCCGGGEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCChHHHHHHHHH-HHCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcceEEEEecCCCHHHHHHHHHHHHHh
Confidence            5789999999999999988777 4579999999998877655432    232   222   233332333333332211 


Q ss_pred             CCcccEEEECCCC
Q psy1959         230 GKYANVVFEAVGG  242 (296)
Q Consensus       230 ~~g~d~vld~~g~  242 (296)
                      -..+|+++++.|.
T Consensus        84 ~g~iD~lv~nAg~   96 (280)
T 1xkq_A           84 FGKIDVLVNNAGA   96 (280)
T ss_dssp             HSCCCEEEECCCC
T ss_pred             cCCCCEEEECCCC
Confidence            1269999999884

>1nff_A Putative oxidoreductase RV2002; directed evolution, GFP, SDR, hydroxysteroid dehydrogenase, structural genomics, PSI; HET: NAD; 1.80A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1nfq_A* 1nfr_A*

Probab=96.95  E-value=0.0016  Score=56.09  Aligned_cols=81  Identities=17%  Similarity=0.074  Sum_probs=53.4

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHH-hcCCcE-E--EEcCCchhHHHHHHHHhC-CCcccE
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIR-QKGAWA-A--LTFTNEKSLVNKVLEVSG-GKYANV  235 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~-~~g~~~-~--~~~~~~~~~~~~i~~~~~-~~g~d~  235 (296)
                      .+++++|+|++|++|.++++.+ ...|++|+++++++++.+.+. ++.... .  .+..+..+..+.+.+... -.++|+
T Consensus         6 ~~k~vlVTGas~gIG~~ia~~l-~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~iD~   84 (260)
T 1nff_A            6 TGKVALVSGGARGMGASHVRAM-VAEGAKVVFGDILDEEGKAMAAELADAARYVHLDVTQPAQWKAAVDTAVTAFGGLHV   84 (260)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHH-HHTTCEEEEEESCHHHHHHHHHHTGGGEEEEECCTTCHHHHHHHHHHHHHHHSCCCE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHH-HHCCCEEEEEeCCHHHHHHHHHHhhcCceEEEecCCCHHHHHHHHHHHHHHcCCCCE
Confidence            5789999999999999988877 447999999999888776553 332221 1  233332333333332211 126999


Q ss_pred             EEECCCC
Q psy1959         236 VFEAVGG  242 (296)
Q Consensus       236 vld~~g~  242 (296)
                      ++++.|.
T Consensus        85 lv~~Ag~   91 (260)
T 1nff_A           85 LVNNAGI   91 (260)
T ss_dssp             EEECCCC
T ss_pred             EEECCCC
Confidence            9999884

>3zv4_A CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; oxidoreductase, short chain dehydrogenase/oxidoreductase, SD comamonas testosteroni; 1.80A {Pandoraea pnomenusa} SCOP: c.2.1.2 PDB: 2y99_A* 3zv3_A 2y93_A 3zv5_A* 3zv6_A* 1bdb_A*

Probab=96.95  E-value=0.0023  Score=55.73  Aligned_cols=81  Identities=17%  Similarity=0.113  Sum_probs=54.8

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHh-cCCcEEE---EcCCchhHHHHHHHHhC-CCcccE
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQ-KGAWAAL---TFTNEKSLVNKVLEVSG-GKYANV  235 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~-~g~~~~~---~~~~~~~~~~~i~~~~~-~~g~d~  235 (296)
                      .|++++|+|+++++|.++++.+ ...|++|+++++++++.+.+.+ .+.....   +..+..+..+.+.+... ...+|+
T Consensus         4 ~gk~~lVTGas~GIG~aia~~l-a~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iD~   82 (281)
T 3zv4_A            4 TGEVALITGGASGLGRALVDRF-VAEGARVAVLDKSAERLRELEVAHGGNAVGVVGDVRSLQDQKRAAERCLAAFGKIDT   82 (281)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHH-HHTTCEEEEEESCHHHHHHHHHHTBTTEEEEECCTTCHHHHHHHHHHHHHHHSCCCE
T ss_pred             CCCEEEEECCCcHHHHHHHHHH-HHCcCEEEEEeCCHHHHHHHHHHcCCcEEEEEcCCCCHHHHHHHHHHHHHhcCCCCE
Confidence            5789999999999999988777 4579999999999888776653 4433322   33332333333333211 126999


Q ss_pred             EEECCCC
Q psy1959         236 VFEAVGG  242 (296)
Q Consensus       236 vld~~g~  242 (296)
                      ++++.|.
T Consensus        83 lvnnAg~   89 (281)
T 3zv4_A           83 LIPNAGI   89 (281)
T ss_dssp             EECCCCC
T ss_pred             EEECCCc
Confidence            9999984

>3sc4_A Short chain dehydrogenase (A0QTM2 homolog); ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.50A {Mycobacterium thermoresistibile}

Probab=96.95  E-value=0.0025  Score=55.59  Aligned_cols=81  Identities=16%  Similarity=0.198  Sum_probs=52.7

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcch-----------HHHHHhcCCcEEE---EcCCchhHHHHHHH
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDK-----------TDLIRQKGAWAAL---TFTNEKSLVNKVLE  226 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~-----------~~~~~~~g~~~~~---~~~~~~~~~~~i~~  226 (296)
                      .+++++|+|+++++|.+.++.+ ...|++|+++++++++           .+.+++.+.....   +..+..+..+.+.+
T Consensus         8 ~~k~vlVTGas~GIG~aia~~l-~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~   86 (285)
T 3sc4_A            8 RGKTMFISGGSRGIGLAIAKRV-AADGANVALVAKSAEPHPKLPGTIYTAAKEIEEAGGQALPIVGDIRDGDAVAAAVAK   86 (285)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHH-HTTTCEEEEEESCCSCCSSSCCCHHHHHHHHHHHTSEEEEEECCTTSHHHHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHH-HHCCCEEEEEECChhhhhhhhHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHH
Confidence            5789999999999999988777 4579999999998763           2233344543322   33332333333333


Q ss_pred             HhC-CCcccEEEECCCC
Q psy1959         227 VSG-GKYANVVFEAVGG  242 (296)
Q Consensus       227 ~~~-~~g~d~vld~~g~  242 (296)
                      ... ...+|+++++.|.
T Consensus        87 ~~~~~g~id~lvnnAg~  103 (285)
T 3sc4_A           87 TVEQFGGIDICVNNASA  103 (285)
T ss_dssp             HHHHHSCCSEEEECCCC
T ss_pred             HHHHcCCCCEEEECCCC
Confidence            211 1269999999984

>3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid, 3-ketoacyl-(acyl-carrier- protein) reductase, oxidoreductase, structural genomics; 2.05A {Burkholderia pseudomallei}

Probab=96.94  E-value=0.0016  Score=56.39  Aligned_cols=81  Identities=26%  Similarity=0.216  Sum_probs=53.5

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHH----hcCCc-EE--EEcCCchhHHHHHHHHhC-CCc
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIR----QKGAW-AA--LTFTNEKSLVNKVLEVSG-GKY  232 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~----~~g~~-~~--~~~~~~~~~~~~i~~~~~-~~g  232 (296)
                      .+++++|+|+++++|.++++.+ ...|++|+++++++++.+.+.    +.+.. ..  .+..+..+..+.+.+... -..
T Consensus        27 ~~k~~lVTGas~GIG~aia~~l-a~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~  105 (270)
T 3ftp_A           27 DKQVAIVTGASRGIGRAIALEL-ARRGAMVIGTATTEAGAEGIGAAFKQAGLEGRGAVLNVNDATAVDALVESTLKEFGA  105 (270)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHH-HHTTCEEEEEESSHHHHHHHHHHHHHHTCCCEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CCCEEEEECCCCHHHHHHHHHH-HHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEEeCCCHHHHHHHHHHHHHHcCC
Confidence            5789999999999999988777 447999999999887765443    23332 22  233442333333332211 126


Q ss_pred             ccEEEECCCC
Q psy1959         233 ANVVFEAVGG  242 (296)
Q Consensus       233 ~d~vld~~g~  242 (296)
                      +|+++++.|.
T Consensus       106 iD~lvnnAg~  115 (270)
T 3ftp_A          106 LNVLVNNAGI  115 (270)
T ss_dssp             CCEEEECCCC
T ss_pred             CCEEEECCCC
Confidence            9999999983

>2d1y_A Hypothetical protein TT0321; strucrtural genomics, thermus thermophilus HB8, structural genomics, NPPSFA; HET: NAD; 1.65A {Thermus thermophilus} SCOP: c.2.1.2

Probab=96.94  E-value=0.0021  Score=55.03  Aligned_cols=80  Identities=20%  Similarity=0.133  Sum_probs=52.5

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCcEEE--EcCCchhHHHHHHHHhC-CCcccEEE
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAAL--TFTNEKSLVNKVLEVSG-GKYANVVF  237 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~i~~~~~-~~g~d~vl  237 (296)
                      .+++++|+|++|++|.+.++.+ ...|++|+++++++++.+..+++.. ..+  +..+..+..+.+.+... -..+|+++
T Consensus         5 ~~k~vlVTGas~gIG~~ia~~l-~~~G~~V~~~~r~~~~~~~~~~~~~-~~~~~D~~~~~~~~~~~~~~~~~~g~iD~lv   82 (256)
T 2d1y_A            5 AGKGVLVTGGARGIGRAIAQAF-AREGALVALCDLRPEGKEVAEAIGG-AFFQVDLEDERERVRFVEEAAYALGRVDVLV   82 (256)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHH-HHTTCEEEEEESSTTHHHHHHHHTC-EEEECCTTCHHHHHHHHHHHHHHHSCCCEEE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHH-HHCCCEEEEEeCChhHHHHHHHhhC-CEEEeeCCCHHHHHHHHHHHHHHcCCCCEEE
Confidence            4789999999999999988777 4479999999998877333334432 322  33332333333333211 12699999


Q ss_pred             ECCCC
Q psy1959         238 EAVGG  242 (296)
Q Consensus       238 d~~g~  242 (296)
                      ++.|.
T Consensus        83 ~~Ag~   87 (256)
T 2d1y_A           83 NNAAI   87 (256)
T ss_dssp             ECCCC
T ss_pred             ECCCC
Confidence            99884

>1zem_A Xylitol dehydrogenase; rossmann fold, dinucleotide-binding domain, oxidoreductase; HET: NAD; 1.90A {Gluconobacter oxydans} SCOP: c.2.1.2

Probab=96.93  E-value=0.0026  Score=54.61  Aligned_cols=81  Identities=22%  Similarity=0.232  Sum_probs=53.2

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHH----hcCCcEE---EEcCCchhHHHHHHHHhC-CCc
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIR----QKGAWAA---LTFTNEKSLVNKVLEVSG-GKY  232 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~----~~g~~~~---~~~~~~~~~~~~i~~~~~-~~g  232 (296)
                      .+++++|+|++|++|.++++.+ ...|++|+++++++++.+.+.    +.+....   .+..+..+..+.+.+... -.+
T Consensus         6 ~~k~vlVTGas~gIG~~ia~~l-~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~   84 (262)
T 1zem_A            6 NGKVCLVTGAGGNIGLATALRL-AEEGTAIALLDMNREALEKAEASVREKGVEARSYVCDVTSEEAVIGTVDSVVRDFGK   84 (262)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHH-HHTTCEEEEEESCHHHHHHHHHHHHTTTSCEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHH-HHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHHhCC
Confidence            5789999999999999988877 457999999999887765443    2243322   233332333333332211 126


Q ss_pred             ccEEEECCCC
Q psy1959         233 ANVVFEAVGG  242 (296)
Q Consensus       233 ~d~vld~~g~  242 (296)
                      +|+++++.|.
T Consensus        85 id~lv~nAg~   94 (262)
T 1zem_A           85 IDFLFNNAGY   94 (262)
T ss_dssp             CCEEEECCCC
T ss_pred             CCEEEECCCC
Confidence            9999999873

>1sny_A Sniffer CG10964-PA; alpha and beta protein, rossmann fold, dinucleotide binding oxidoreductase; HET: NAP; 1.75A {Drosophila melanogaster} SCOP: c.2.1.2

Probab=96.93  E-value=0.0016  Score=55.81  Aligned_cols=81  Identities=17%  Similarity=0.294  Sum_probs=53.8

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCC---CEEEEEeCCcchHHHHHhc---CCcE-E--EEcCCchhHHHHHHHH---h
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYK---AKVIGVCNSEDKTDLIRQK---GAWA-A--LTFTNEKSLVNKVLEV---S  228 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g---~~Vi~~~~~~~~~~~~~~~---g~~~-~--~~~~~~~~~~~~i~~~---~  228 (296)
                      ++++++|+|++|++|.++++.+ ...|   ++|++++++.++.+.++++   +... .  .+..+..+..+.+.+.   .
T Consensus        20 ~~k~vlITGasggIG~~la~~L-~~~G~~~~~V~~~~r~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~   98 (267)
T 1sny_A           20 HMNSILITGCNRGLGLGLVKAL-LNLPQPPQHLFTTCRNREQAKELEDLAKNHSNIHILEIDLRNFDAYDKLVADIEGVT   98 (267)
T ss_dssp             CCSEEEESCCSSHHHHHHHHHH-HTSSSCCSEEEEEESCTTSCHHHHHHHHHCTTEEEEECCTTCGGGHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCcHHHHHHHHH-HhcCCCCcEEEEEecChhhhHHHHHhhccCCceEEEEecCCChHHHHHHHHHHHHhc
Confidence            5789999999999999988877 4568   9999999987765544432   3222 2  2333323444433333   2


Q ss_pred             CCCcccEEEECCCC
Q psy1959         229 GGKYANVVFEAVGG  242 (296)
Q Consensus       229 ~~~g~d~vld~~g~  242 (296)
                      +...+|++|++.|.
T Consensus        99 g~~~id~li~~Ag~  112 (267)
T 1sny_A           99 KDQGLNVLFNNAGI  112 (267)
T ss_dssp             GGGCCSEEEECCCC
T ss_pred             CCCCccEEEECCCc
Confidence            22259999999984

>2rhc_B Actinorhodin polyketide ketoreductase; oxidoreductase, combinatorial biosynthesis, short chain dehydrogenase/reductase; HET: NAP EMO; 2.10A {Streptomyces coelicolor} SCOP: c.2.1.2 PDB: 2rh4_A* 1w4z_A* 3csd_B* 3qrw_A* 3ri3_B* 2rhr_B* 1x7g_A* 1x7h_A* 1xr3_A*

Probab=96.93  E-value=0.0027  Score=55.14  Aligned_cols=81  Identities=20%  Similarity=0.195  Sum_probs=53.6

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHH----HhcCCcEE---EEcCCchhHHHHHHHHhC-CCc
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLI----RQKGAWAA---LTFTNEKSLVNKVLEVSG-GKY  232 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~----~~~g~~~~---~~~~~~~~~~~~i~~~~~-~~g  232 (296)
                      .+++++|+|++|++|.++++.+ ...|++|+++++++++.+.+    ++.+....   .+..+..+..+.+.+... -.+
T Consensus        21 ~~k~vlVTGas~gIG~~ia~~l-~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~   99 (277)
T 2rhc_B           21 DSEVALVTGATSGIGLEIARRL-GKEGLRVFVCARGEEGLRTTLKELREAGVEADGRTCDVRSVPEIEALVAAVVERYGP   99 (277)
T ss_dssp             TSCEEEEETCSSHHHHHHHHHH-HHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHTCS
T ss_pred             CCCEEEEECCCCHHHHHHHHHH-HHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHHhCC
Confidence            5789999999999999988877 45799999999988766543    22343322   233332333333333211 126


Q ss_pred             ccEEEECCCC
Q psy1959         233 ANVVFEAVGG  242 (296)
Q Consensus       233 ~d~vld~~g~  242 (296)
                      +|+++++.|.
T Consensus       100 iD~lv~~Ag~  109 (277)
T 2rhc_B          100 VDVLVNNAGR  109 (277)
T ss_dssp             CSEEEECCCC
T ss_pred             CCEEEECCCC
Confidence            9999999984

>1o5i_A 3-oxoacyl-(acyl carrier protein) reductase; TM1169, structur genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: NAD; 2.50A {Thermotoga maritima} SCOP: c.2.1.2

Probab=96.93  E-value=0.005  Score=52.48  Aligned_cols=75  Identities=24%  Similarity=0.248  Sum_probs=50.4

Q ss_pred             CCCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCcEEEEcCCchhHHHHHHHHhCCCcccEEEEC
Q psy1959         160 KEKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNKVLEVSGGKYANVVFEA  239 (296)
Q Consensus       160 ~~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~g~d~vld~  239 (296)
                      -.+++++|+|++|++|.++++.+ ...|++|++++++++..   ++++....+ .+-..+..+.+.+. .  ++|+++++
T Consensus        17 ~~~k~vlVTGas~gIG~~~a~~l-~~~G~~V~~~~r~~~~~---~~~~~~~~~-~D~~~~~~~~~~~~-~--~iD~lv~~   88 (249)
T 1o5i_A           17 IRDKGVLVLAASRGIGRAVADVL-SQEGAEVTICARNEELL---KRSGHRYVV-CDLRKDLDLLFEKV-K--EVDILVLN   88 (249)
T ss_dssp             CTTCEEEEESCSSHHHHHHHHHH-HHTTCEEEEEESCHHHH---HHTCSEEEE-CCTTTCHHHHHHHS-C--CCSEEEEC
T ss_pred             cCCCEEEEECCCCHHHHHHHHHH-HHCCCEEEEEcCCHHHH---HhhCCeEEE-eeHHHHHHHHHHHh-c--CCCEEEEC
Confidence            36889999999999999988877 45799999999887443   344422222 21112333333332 2  79999999


Q ss_pred             CCC
Q psy1959         240 VGG  242 (296)
Q Consensus       240 ~g~  242 (296)
                      .|.
T Consensus        89 Ag~   91 (249)
T 1o5i_A           89 AGG   91 (249)
T ss_dssp             CCC
T ss_pred             CCC
Confidence            984

>2o23_A HADH2 protein; HSD17B10, schad, ERAB, type II HADH, 2-methyl-3-hydroxybuTyr dehydrogenase, MHBD, structural genomics, structural genomi consortium; HET: NAD GOL; 1.20A {Homo sapiens} SCOP: c.2.1.2 PDB: 1so8_A 1u7t_A* 1e3s_A* 1e3w_B* 1e3w_A* 1e6w_A*

Probab=96.93  E-value=0.0029  Score=54.06  Aligned_cols=81  Identities=17%  Similarity=0.155  Sum_probs=54.2

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHH-hcCCcEE---EEcCCchhHHHHHHHHhC-CCcccE
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIR-QKGAWAA---LTFTNEKSLVNKVLEVSG-GKYANV  235 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~-~~g~~~~---~~~~~~~~~~~~i~~~~~-~~g~d~  235 (296)
                      .+++++|+|++|++|.++++.+ ...|++|+++++++++.+.+. +++....   .+..+..++.+.+.+... ..++|+
T Consensus        11 ~~k~vlVTGasggiG~~~a~~l-~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~id~   89 (265)
T 2o23_A           11 KGLVAVITGGASGLGLATAERL-VGQGASAVLLDLPNSGGEAQAKKLGNNCVFAPADVTSEKDVQTALALAKGKFGRVDV   89 (265)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHH-HHTTCEEEEEECTTSSHHHHHHHHCTTEEEEECCTTCHHHHHHHHHHHHHHHSCCCE
T ss_pred             CCCEEEEECCCChHHHHHHHHH-HHCCCEEEEEeCCcHhHHHHHHHhCCceEEEEcCCCCHHHHHHHHHHHHHHCCCCCE
Confidence            5789999999999999988877 457999999999888766553 3443322   233332333333332211 126999


Q ss_pred             EEECCCC
Q psy1959         236 VFEAVGG  242 (296)
Q Consensus       236 vld~~g~  242 (296)
                      ++++.|.
T Consensus        90 li~~Ag~   96 (265)
T 2o23_A           90 AVNCAGI   96 (265)
T ss_dssp             EEECCCC
T ss_pred             EEECCcc
Confidence            9999874

>3m1a_A Putative dehydrogenase; short, PSI, MCSG, structural genomics, midwest center for structural genomics, protein structure initiative; 2.00A {Streptomyces avermitilis}

Probab=96.92  E-value=0.0027  Score=55.03  Aligned_cols=81  Identities=22%  Similarity=0.226  Sum_probs=54.9

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHh-cCCcEE---EEcCCchhHHHHHHHHhC-CCcccE
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQ-KGAWAA---LTFTNEKSLVNKVLEVSG-GKYANV  235 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~-~g~~~~---~~~~~~~~~~~~i~~~~~-~~g~d~  235 (296)
                      .+++++|+|++|++|.++++.+ ...|++|+++++++++.+.+.+ .+....   .+..+..++.+.+.+... ..++|+
T Consensus         4 ~~k~vlVTGas~gIG~~~a~~l-~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~g~id~   82 (281)
T 3m1a_A            4 SAKVWLVTGASSGFGRAIAEAA-VAAGDTVIGTARRTEALDDLVAAYPDRAEAISLDVTDGERIDVVAADVLARYGRVDV   82 (281)
T ss_dssp             CCCEEEETTTTSHHHHHHHHHH-HHTTCEEEEEESSGGGGHHHHHHCTTTEEEEECCTTCHHHHHHHHHHHHHHHSCCSE
T ss_pred             CCcEEEEECCCChHHHHHHHHH-HHCCCEEEEEeCCHHHHHHHHHhccCCceEEEeeCCCHHHHHHHHHHHHHhCCCCCE
Confidence            4689999999999999988877 4579999999999888776653 443322   233332333333332211 126999


Q ss_pred             EEECCCC
Q psy1959         236 VFEAVGG  242 (296)
Q Consensus       236 vld~~g~  242 (296)
                      ++++.|.
T Consensus        83 lv~~Ag~   89 (281)
T 3m1a_A           83 LVNNAGR   89 (281)
T ss_dssp             EEECCCC
T ss_pred             EEECCCc
Confidence            9999984

>3uf0_A Short-chain dehydrogenase/reductase SDR; gluconate, gluconate 5-dehydratase, NAD(P) dependent, enzyme initiative, EFI, oxidoreductase; HET: NAP; 2.00A {Beutenbergia cavernae} SCOP: c.2.1.0

Probab=96.92  E-value=0.0025  Score=55.34  Aligned_cols=81  Identities=20%  Similarity=0.252  Sum_probs=50.5

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHh---cCCcEE---EEcCCchhHHHHHHHHhCCCccc
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQ---KGAWAA---LTFTNEKSLVNKVLEVSGGKYAN  234 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~---~g~~~~---~~~~~~~~~~~~i~~~~~~~g~d  234 (296)
                      .|++++|+|+++++|.++++.+ ...|++|++++++++..+.+++   .+....   .+..+..+..+.........++|
T Consensus        30 ~gk~~lVTGas~GIG~aia~~l-a~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~g~iD  108 (273)
T 3uf0_A           30 AGRTAVVTGAGSGIGRAIAHGY-ARAGAHVLAWGRTDGVKEVADEIADGGGSAEAVVADLADLEGAANVAEELAATRRVD  108 (273)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHH-HHTTCEEEEEESSTHHHHHHHHHHTTTCEEEEEECCTTCHHHHHHHHHHHHHHSCCC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHH-HHCCCEEEEEcCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHhcCCCc
Confidence            5889999999999999988777 4579999999966543333333   343322   22333222222211111113799


Q ss_pred             EEEECCCC
Q psy1959         235 VVFEAVGG  242 (296)
Q Consensus       235 ~vld~~g~  242 (296)
                      +++++.|.
T Consensus       109 ~lv~nAg~  116 (273)
T 3uf0_A          109 VLVNNAGI  116 (273)
T ss_dssp             EEEECCCC
T ss_pred             EEEECCCC
Confidence            99999884

>1x1t_A D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, SDR, short chain dehydrogenase, ketone BODY, beta hydroxybutyrate, oxidoreductase; HET: NAD; 1.52A {Pseudomonas fragi} SCOP: c.2.1.2 PDB: 1wmb_A* 2ztl_A* 2ztv_A* 2ztm_A* 2ztu_A* 2yz7_A 2zea_A* 3eew_A* 3vdq_A* 3vdr_A*

Probab=96.92  E-value=0.0027  Score=54.48  Aligned_cols=81  Identities=12%  Similarity=0.150  Sum_probs=52.4

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcch-HHHHH-hc----CCcEEE---EcCCchhHHHHHHHHhC-C
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDK-TDLIR-QK----GAWAAL---TFTNEKSLVNKVLEVSG-G  230 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~-~~~~~-~~----g~~~~~---~~~~~~~~~~~i~~~~~-~  230 (296)
                      ++++++|+|++|++|.++++.+ ...|++|+++++++++ .+.+. ++    +.....   +..+..++.+.+.+... -
T Consensus         3 ~~k~vlVTGas~gIG~~ia~~l-~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~   81 (260)
T 1x1t_A            3 KGKVAVVTGSTSGIGLGIATAL-AAQGADIVLNGFGDAAEIEKVRAGLAAQHGVKVLYDGADLSKGEAVRGLVDNAVRQM   81 (260)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHH-HHTTCEEEEECCSCHHHHHHHHHHHHHHHTSCEEEECCCTTSHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHH-HHcCCEEEEEeCCcchHHHHHHHHHHhccCCcEEEEECCCCCHHHHHHHHHHHHHhc
Confidence            4689999999999999988877 4579999999988776 54432 21    433322   33332333333333211 1


Q ss_pred             CcccEEEECCCC
Q psy1959         231 KYANVVFEAVGG  242 (296)
Q Consensus       231 ~g~d~vld~~g~  242 (296)
                      .++|+++++.|.
T Consensus        82 g~iD~lv~~Ag~   93 (260)
T 1x1t_A           82 GRIDILVNNAGI   93 (260)
T ss_dssp             SCCSEEEECCCC
T ss_pred             CCCCEEEECCCC
Confidence            269999999884

>3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber}

Probab=96.91  E-value=0.0025  Score=55.36  Aligned_cols=82  Identities=17%  Similarity=0.165  Sum_probs=52.6

Q ss_pred             CCCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHH----hcCCcEEE---EcCCchhHHHHHHHHhC-CC
Q psy1959         160 KEKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIR----QKGAWAAL---TFTNEKSLVNKVLEVSG-GK  231 (296)
Q Consensus       160 ~~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~----~~g~~~~~---~~~~~~~~~~~i~~~~~-~~  231 (296)
                      ..+++++|+|+++++|.++++.+ ...|++|+++++++++.+.+.    +.+.....   +..+..+..+.+.+... -.
T Consensus        22 ~~~k~~lVTGas~GIG~aia~~l-a~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g  100 (279)
T 3sju_A           22 SRPQTAFVTGVSSGIGLAVARTL-AARGIAVYGCARDAKNVSAAVDGLRAAGHDVDGSSCDVTSTDEVHAAVAAAVERFG  100 (279)
T ss_dssp             ---CEEEEESTTSHHHHHHHHHH-HHTTCEEEEEESCHHHHHHHHHHHHTTTCCEEEEECCTTCHHHHHHHHHHHHHHHC
T ss_pred             cCCCEEEEeCCCCHHHHHHHHHH-HHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence            35789999999999999987777 447999999999888765443    33443322   33332333333333211 12


Q ss_pred             cccEEEECCCC
Q psy1959         232 YANVVFEAVGG  242 (296)
Q Consensus       232 g~d~vld~~g~  242 (296)
                      .+|+++++.|.
T Consensus       101 ~id~lv~nAg~  111 (279)
T 3sju_A          101 PIGILVNSAGR  111 (279)
T ss_dssp             SCCEEEECCCC
T ss_pred             CCcEEEECCCC
Confidence            69999999984

>3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0

Probab=96.91  E-value=0.003  Score=54.37  Aligned_cols=81  Identities=15%  Similarity=0.171  Sum_probs=54.5

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHH----hcCCcEE---EEcCCchhHHHHHHHHhC-CCc
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIR----QKGAWAA---LTFTNEKSLVNKVLEVSG-GKY  232 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~----~~g~~~~---~~~~~~~~~~~~i~~~~~-~~g  232 (296)
                      .+++++|+|+++++|.+.++.+ ...|++|+++++++++.+.+.    +.+....   .+..+..+..+.+.+... -..
T Consensus        10 ~~k~vlVTGas~gIG~aia~~l-~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~   88 (264)
T 3ucx_A           10 TDKVVVISGVGPALGTTLARRC-AEQGADLVLAARTVERLEDVAKQVTDTGRRALSVGTDITDDAQVAHLVDETMKAYGR   88 (264)
T ss_dssp             TTCEEEEESCCTTHHHHHHHHH-HHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHTSC
T ss_pred             CCcEEEEECCCcHHHHHHHHHH-HHCcCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence            6889999999999999987777 457999999999888766543    2343332   233342333333333211 136


Q ss_pred             ccEEEECCCC
Q psy1959         233 ANVVFEAVGG  242 (296)
Q Consensus       233 ~d~vld~~g~  242 (296)
                      +|+++++.|.
T Consensus        89 id~lv~nAg~   98 (264)
T 3ucx_A           89 VDVVINNAFR   98 (264)
T ss_dssp             CSEEEECCCS
T ss_pred             CcEEEECCCC
Confidence            9999999864

>1zmo_A Halohydrin dehalogenase; haloalcohol dehalogenase, short- chain dehydrogenase/reductase family, lyase; 2.00A {Arthrobacter SP}

Probab=96.91  E-value=0.0017  Score=55.19  Aligned_cols=77  Identities=19%  Similarity=0.121  Sum_probs=52.0

Q ss_pred             CcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEE-e--CCcchHHHHH-hc-CCcEEEEcCCchhHHHHHHHHhCCCcccEE
Q psy1959         162 KQTVLVTAAGGGLGLAAVDMATKIYKAKVIGV-C--NSEDKTDLIR-QK-GAWAALTFTNEKSLVNKVLEVSGGKYANVV  236 (296)
Q Consensus       162 g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~-~--~~~~~~~~~~-~~-g~~~~~~~~~~~~~~~~i~~~~~~~g~d~v  236 (296)
                      +++++|+|++|++|.++++.+ ...|++|+++ +  +++++.+.+. ++ +. .+.+......+.+.+.+..  ..+|++
T Consensus         1 ~k~vlVTGas~gIG~~ia~~l-~~~G~~V~~~~~~~r~~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~--g~iD~l   76 (244)
T 1zmo_A            1 MVIALVTHARHFAGPAAVEAL-TQDGYTVVCHDASFADAAERQRFESENPGT-IALAEQKPERLVDATLQHG--EAIDTI   76 (244)
T ss_dssp             -CEEEESSTTSTTHHHHHHHH-HHTTCEEEECCGGGGSHHHHHHHHHHSTTE-EECCCCCGGGHHHHHGGGS--SCEEEE
T ss_pred             CCEEEEECCCChHHHHHHHHH-HHCCCEEEEecCCcCCHHHHHHHHHHhCCC-cccCHHHHHHHHHHHHHHc--CCCCEE
Confidence            468999999999999988877 4579999999 6  8887776554 33 32 2223333234444443332  369999


Q ss_pred             EECCCC
Q psy1959         237 FEAVGG  242 (296)
Q Consensus       237 ld~~g~  242 (296)
                      +++.|.
T Consensus        77 v~~Ag~   82 (244)
T 1zmo_A           77 VSNDYI   82 (244)
T ss_dssp             EECCCC
T ss_pred             EECCCc
Confidence            999884

>1g0o_A Trihydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, dinucleotide binding fold, oxidoreductase; HET: NDP PYQ; 1.70A {Magnaporthe grisea} SCOP: c.2.1.2 PDB: 1doh_A* 1g0n_A* 1ybv_A*

Probab=96.91  E-value=0.0031  Score=54.82  Aligned_cols=81  Identities=23%  Similarity=0.202  Sum_probs=52.0

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcch-HH----HHHhcCCcEEE---EcCCchhHHHHHHHHhC-CC
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDK-TD----LIRQKGAWAAL---TFTNEKSLVNKVLEVSG-GK  231 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~-~~----~~~~~g~~~~~---~~~~~~~~~~~i~~~~~-~~  231 (296)
                      ++++++|+|++|++|.++++.+ ...|++|++++++.++ .+    .+++.+.....   +..+..+..+.+.+... -.
T Consensus        28 ~~k~vlVTGas~gIG~~ia~~l-~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g  106 (283)
T 1g0o_A           28 EGKVALVTGAGRGIGREMAMEL-GRRGCKVIVNYANSTESAEEVVAAIKKNGSDAACVKANVGVVEDIVRMFEEAVKIFG  106 (283)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHH-HHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEeCCCcHHHHHHHHHH-HHCCCEEEEEeCCchHHHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence            5789999999999999988877 4579999999987653 22    23444543322   33332333333332211 12


Q ss_pred             cccEEEECCCC
Q psy1959         232 YANVVFEAVGG  242 (296)
Q Consensus       232 g~d~vld~~g~  242 (296)
                      ++|+++++.|.
T Consensus       107 ~iD~lv~~Ag~  117 (283)
T 1g0o_A          107 KLDIVCSNSGV  117 (283)
T ss_dssp             CCCEEEECCCC
T ss_pred             CCCEEEECCCc
Confidence            69999999984

>3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A {Gluconobacter oxydans}

Probab=96.91  E-value=0.0036  Score=53.30  Aligned_cols=81  Identities=23%  Similarity=0.253  Sum_probs=52.9

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHH----HhcCCcEE---EEcCCchhHHHHHHHHhC-CCc
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLI----RQKGAWAA---LTFTNEKSLVNKVLEVSG-GKY  232 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~----~~~g~~~~---~~~~~~~~~~~~i~~~~~-~~g  232 (296)
                      .+++++|+|++|++|.+.++.+ ...|++|+++++++++.+.+    ++.+....   .+..+..++.+.+.+... ..+
T Consensus        12 ~~k~vlItGasggiG~~la~~l-~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   90 (260)
T 3awd_A           12 DNRVAIVTGGAQNIGLACVTAL-AEAGARVIIADLDEAMATKAVEDLRMEGHDVSSVVMDVTNTESVQNAVRSVHEQEGR   90 (260)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHH-HHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CCCEEEEeCCCchHHHHHHHHH-HHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHHcCC
Confidence            5789999999999999988877 44799999999987765433    23343322   233332333333332211 126


Q ss_pred             ccEEEECCCC
Q psy1959         233 ANVVFEAVGG  242 (296)
Q Consensus       233 ~d~vld~~g~  242 (296)
                      +|+++.+.|.
T Consensus        91 id~vi~~Ag~  100 (260)
T 3awd_A           91 VDILVACAGI  100 (260)
T ss_dssp             CCEEEECCCC
T ss_pred             CCEEEECCCC
Confidence            9999999873

>2qq5_A DHRS1, dehydrogenase/reductase SDR family member 1; short-chain, structura genomics consortium, SGC, oxidoreductase; 1.80A {Homo sapiens}

Probab=96.91  E-value=0.0031  Score=54.01  Aligned_cols=80  Identities=18%  Similarity=0.095  Sum_probs=53.2

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHh----cCCcEE---EEcCCchhHHHHHHHHhC--CC
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQ----KGAWAA---LTFTNEKSLVNKVLEVSG--GK  231 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~----~g~~~~---~~~~~~~~~~~~i~~~~~--~~  231 (296)
                      .+++++|+|++|++|.++++.+ ...|++|+++++++++.+.+.+    .+....   .+..+..+..+.+.+...  ..
T Consensus         4 ~~k~vlVTGas~gIG~~ia~~l-~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~~g   82 (260)
T 2qq5_A            4 NGQVCVVTGASRGIGRGIALQL-CKAGATVYITGRHLDTLRVVAQEAQSLGGQCVPVVCDSSQESEVRSLFEQVDREQQG   82 (260)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHH-HHTTCEEEEEESCHHHHHHHHHHHHHHSSEEEEEECCTTSHHHHHHHHHHHHHHHTT
T ss_pred             CCCEEEEeCCCchHHHHHHHHH-HHCCCEEEEEeCCHHHHHHHHHHHHHcCCceEEEECCCCCHHHHHHHHHHHHHhcCC
Confidence            4689999999999999988877 4579999999998877654432    243222   233332333344443321  23


Q ss_pred             cccEEEECCC
Q psy1959         232 YANVVFEAVG  241 (296)
Q Consensus       232 g~d~vld~~g  241 (296)
                      .+|+++++.|
T Consensus        83 ~id~lvnnAg   92 (260)
T 2qq5_A           83 RLDVLVNNAY   92 (260)
T ss_dssp             CCCEEEECCC
T ss_pred             CceEEEECCc
Confidence            6899999994

>2ehd_A Oxidoreductase, oxidoreductase, short-chain dehydrogenase/reducta; rossman fold, structural genomics, NPPSFA; 2.40A {Thermus thermophilus}

Probab=96.90  E-value=0.0025  Score=53.52  Aligned_cols=80  Identities=16%  Similarity=0.123  Sum_probs=53.1

Q ss_pred             CcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHh-cCCcEE--EEcCCchhHHHHHHHHhC-CCcccEEE
Q psy1959         162 KQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQ-KGAWAA--LTFTNEKSLVNKVLEVSG-GKYANVVF  237 (296)
Q Consensus       162 g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~-~g~~~~--~~~~~~~~~~~~i~~~~~-~~g~d~vl  237 (296)
                      +++++|+|++|++|.+.++.+ ...|++|+++++++++.+.+.+ +.....  .+..+..++.+.+.+... -.++|+++
T Consensus         5 ~k~vlVtGasggiG~~~a~~l-~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~li   83 (234)
T 2ehd_A            5 KGAVLITGASRGIGEATARLL-HAKGYRVGLMARDEKRLQALAAELEGALPLPGDVREEGDWARAVAAMEEAFGELSALV   83 (234)
T ss_dssp             CCEEEESSTTSHHHHHHHHHH-HHTTCEEEEEESCHHHHHHHHHHSTTCEEEECCTTCHHHHHHHHHHHHHHHSCCCEEE
T ss_pred             CCEEEEECCCcHHHHHHHHHH-HHCCCEEEEEECCHHHHHHHHHHhhhceEEEecCCCHHHHHHHHHHHHHHcCCCCEEE
Confidence            578999999999999988877 4579999999998887765543 322222  233332333333333211 12689999


Q ss_pred             ECCCC
Q psy1959         238 EAVGG  242 (296)
Q Consensus       238 d~~g~  242 (296)
                      ++.|.
T Consensus        84 ~~Ag~   88 (234)
T 2ehd_A           84 NNAGV   88 (234)
T ss_dssp             ECCCC
T ss_pred             ECCCc
Confidence            99883

>1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain dehydrogenase, HUM structural genomics, structural genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens} SCOP: c.2.1.2

Probab=96.90  E-value=0.0029  Score=54.67  Aligned_cols=81  Identities=17%  Similarity=0.169  Sum_probs=53.8

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHH----hcCCcEE---EEcCCchhHHHHHHHHhC-CCc
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIR----QKGAWAA---LTFTNEKSLVNKVLEVSG-GKY  232 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~----~~g~~~~---~~~~~~~~~~~~i~~~~~-~~g  232 (296)
                      .+++++|+|++|++|.++++.+ ...|++|+++++++++.+.+.    +.+....   .+..+..+..+.+.+... ..+
T Consensus        30 ~~k~vlITGasggIG~~la~~L-~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g~  108 (272)
T 1yb1_A           30 TGEIVLITGAGHGIGRLTAYEF-AKLKSKLVLWDINKHGLEETAAKCKGLGAKVHTFVVDCSNREDIYSSAKKVKAEIGD  108 (272)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHH-HHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHTCC
T ss_pred             CCCEEEEECCCchHHHHHHHHH-HHCCCEEEEEEcCHHHHHHHHHHHHhcCCeEEEEEeeCCCHHHHHHHHHHHHHHCCC
Confidence            5789999999999999988877 457999999999887765443    2343322   233332333333333211 136


Q ss_pred             ccEEEECCCC
Q psy1959         233 ANVVFEAVGG  242 (296)
Q Consensus       233 ~d~vld~~g~  242 (296)
                      +|+++++.|.
T Consensus       109 iD~li~~Ag~  118 (272)
T 1yb1_A          109 VSILVNNAGV  118 (272)
T ss_dssp             CSEEEECCCC
T ss_pred             CcEEEECCCc
Confidence            9999999984

>1w6u_A 2,4-dienoyl-COA reductase, mitochondrial precursor; short chain dehydrogenase, beta- oxidation, NADP, oxidoreductase; HET: HXC NAP; 1.75A {Homo sapiens} SCOP: c.2.1.2 PDB: 1w73_A* 1w8d_A*

Probab=96.90  E-value=0.0028  Score=55.45  Aligned_cols=80  Identities=16%  Similarity=0.200  Sum_probs=53.0

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHh-c----CCcEE---EEcCCchhHHHHHHHHh-CCC
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQ-K----GAWAA---LTFTNEKSLVNKVLEVS-GGK  231 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~-~----g~~~~---~~~~~~~~~~~~i~~~~-~~~  231 (296)
                      .+++++|+|++|++|.+.++.+ ...|++|+++++++++.+.+.+ +    +....   .+..+..+..+.+.+.. ...
T Consensus        25 ~~k~vlITGasggiG~~la~~L-~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g  103 (302)
T 1w6u_A           25 QGKVAFITGGGTGLGKGMTTLL-SSLGAQCVIASRKMDVLKATAEQISSQTGNKVHAIQCDVRDPDMVQNTVSELIKVAG  103 (302)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHH-HHTTCEEEEEESCHHHHHHHHHHHHHHHSSCEEEEECCTTCHHHHHHHHHHHHHHTC
T ss_pred             CCCEEEEECCCchHHHHHHHHH-HHCCCEEEEEeCCHHHHHHHHHHHHHhcCCceEEEEeCCCCHHHHHHHHHHHHHHcC
Confidence            5789999999999999988877 4479999999998877654432 1    43322   23333233333333321 123


Q ss_pred             cccEEEECCC
Q psy1959         232 YANVVFEAVG  241 (296)
Q Consensus       232 g~d~vld~~g  241 (296)
                      .+|+++++.|
T Consensus       104 ~id~li~~Ag  113 (302)
T 1w6u_A          104 HPNIVINNAA  113 (302)
T ss_dssp             SCSEEEECCC
T ss_pred             CCCEEEECCC
Confidence            6899999998

>3tox_A Short chain dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; HET: NAP; 1.93A {Sinorhizobium meliloti}

Probab=96.90  E-value=0.0039  Score=54.29  Aligned_cols=81  Identities=22%  Similarity=0.154  Sum_probs=53.5

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHh-c---CCcEEE---EcCCchhHHHHHHHHhC-CCc
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQ-K---GAWAAL---TFTNEKSLVNKVLEVSG-GKY  232 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~-~---g~~~~~---~~~~~~~~~~~i~~~~~-~~g  232 (296)
                      .|++++|+|+++++|.++++.+ ...|++|+++++++++.+.+.+ +   +.....   +..+..+..+.+.+... -.+
T Consensus         7 ~gk~vlVTGas~GIG~aia~~l-a~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~   85 (280)
T 3tox_A            7 EGKIAIVTGASSGIGRAAALLF-AREGAKVVVTARNGNALAELTDEIAGGGGEAAALAGDVGDEALHEALVELAVRRFGG   85 (280)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHH-HHTTCEEEECCSCHHHHHHHHHHHTTTTCCEEECCCCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CCCEEEEECCCcHHHHHHHHHH-HHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence            5789999999999999988777 4579999999999887665543 2   333322   23332233333322211 126


Q ss_pred             ccEEEECCCC
Q psy1959         233 ANVVFEAVGG  242 (296)
Q Consensus       233 ~d~vld~~g~  242 (296)
                      +|+++++.|.
T Consensus        86 iD~lvnnAg~   95 (280)
T 3tox_A           86 LDTAFNNAGA   95 (280)
T ss_dssp             CCEEEECCCC
T ss_pred             CCEEEECCCC
Confidence            9999999883

>3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein] reductase; PSI-biology, structural genomics, protein structure initiati nysgrc; 2.70A {Sinorhizobium meliloti}

Probab=96.89  E-value=0.003  Score=55.11  Aligned_cols=81  Identities=19%  Similarity=0.193  Sum_probs=53.9

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHh----cCCcEE---EEcCCchhHHHHHHHHhC-CCc
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQ----KGAWAA---LTFTNEKSLVNKVLEVSG-GKY  232 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~----~g~~~~---~~~~~~~~~~~~i~~~~~-~~g  232 (296)
                      ++++++|+|+++++|.++++.+ ...|++|+++++++++.+.+.+    .+....   .+..+..+..+.+.+... -.+
T Consensus        27 ~~k~~lVTGas~GIG~aia~~l-a~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~  105 (283)
T 3v8b_A           27 PSPVALITGAGSGIGRATALAL-AADGVTVGALGRTRTEVEEVADEIVGAGGQAIALEADVSDELQMRNAVRDLVLKFGH  105 (283)
T ss_dssp             CCCEEEEESCSSHHHHHHHHHH-HHTTCEEEEEESSHHHHHHHHHHHTTTTCCEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CCCEEEEECCCCHHHHHHHHHH-HHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHhCC
Confidence            5789999999999999988777 4479999999999887665543    233322   233332333333333211 126


Q ss_pred             ccEEEECCCC
Q psy1959         233 ANVVFEAVGG  242 (296)
Q Consensus       233 ~d~vld~~g~  242 (296)
                      +|+++++.|.
T Consensus       106 iD~lVnnAg~  115 (283)
T 3v8b_A          106 LDIVVANAGI  115 (283)
T ss_dssp             CCEEEECCCC
T ss_pred             CCEEEECCCC
Confidence            9999999884

>2pnf_A 3-oxoacyl-[acyl-carrier-protein] reductase; short chain oxidoreductase, rossmann fold, oxidoreductase; HET: 1PE MES; 1.80A {Aquifex aeolicus} PDB: 2p68_A*

Probab=96.88  E-value=0.0025  Score=53.91  Aligned_cols=81  Identities=19%  Similarity=0.222  Sum_probs=53.7

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHh-----cCCcEE-E--EcCCchhHHHHHHHHhC-CC
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQ-----KGAWAA-L--TFTNEKSLVNKVLEVSG-GK  231 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~-----~g~~~~-~--~~~~~~~~~~~i~~~~~-~~  231 (296)
                      ++++++|+|++|++|.+.++.+ ...|++|+++++++++.+.+.+     .+.... +  +..+..++.+.+.+... -.
T Consensus         6 ~~~~vlVtGasggiG~~la~~l-~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~   84 (248)
T 2pnf_A            6 QGKVSLVTGSTRGIGRAIAEKL-ASAGSTVIITGTSGERAKAVAEEIANKYGVKAHGVEMNLLSEESINKAFEEIYNLVD   84 (248)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHH-HHTTCEEEEEESSHHHHHHHHHHHHHHHCCCEEEEECCTTCHHHHHHHHHHHHHHSS
T ss_pred             CCCEEEEECCCchHHHHHHHHH-HHCCCEEEEEeCChHHHHHHHHHHHhhcCCceEEEEccCCCHHHHHHHHHHHHHhcC
Confidence            4789999999999999988877 4479999999998877654432     243322 2  33332333333333211 13


Q ss_pred             cccEEEECCCC
Q psy1959         232 YANVVFEAVGG  242 (296)
Q Consensus       232 g~d~vld~~g~  242 (296)
                      ++|+++++.|.
T Consensus        85 ~~d~vi~~Ag~   95 (248)
T 2pnf_A           85 GIDILVNNAGI   95 (248)
T ss_dssp             CCSEEEECCCC
T ss_pred             CCCEEEECCCC
Confidence            69999999884

>3t4x_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, center for structural genomics of infec diseases, csgid; 2.80A {Bacillus anthracis}

Probab=96.88  E-value=0.0046  Score=53.25  Aligned_cols=78  Identities=18%  Similarity=0.174  Sum_probs=51.8

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHH----hcC--CcEE-E--EcCCchhHHHHHHHHhCCC
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIR----QKG--AWAA-L--TFTNEKSLVNKVLEVSGGK  231 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~----~~g--~~~~-~--~~~~~~~~~~~i~~~~~~~  231 (296)
                      .+++++|+|+++++|.+.++.+ ...|++|+++++++++.+.+.    +.+  .... +  +..+ .+..+.+.+..  .
T Consensus         9 ~~k~~lVTGas~gIG~aia~~l-~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~--g   84 (267)
T 3t4x_A            9 KGKTALVTGSTAGIGKAIATSL-VAEGANVLINGRREENVNETIKEIRAQYPDAILQPVVADLGT-EQGCQDVIEKY--P   84 (267)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHH-HHTTCEEEEEESSHHHHHHHHHHHHHHCTTCEEEEEECCTTS-HHHHHHHHHHC--C
T ss_pred             CCCEEEEeCCCcHHHHHHHHHH-HHCCCEEEEEeCCHHHHHHHHHHHHhhCCCceEEEEecCCCC-HHHHHHHHHhc--C
Confidence            5789999999999999988777 447999999999887765432    222  2221 1  2233 22223333322  3


Q ss_pred             cccEEEECCCC
Q psy1959         232 YANVVFEAVGG  242 (296)
Q Consensus       232 g~d~vld~~g~  242 (296)
                      .+|+++++.|.
T Consensus        85 ~id~lv~nAg~   95 (267)
T 3t4x_A           85 KVDILINNLGI   95 (267)
T ss_dssp             CCSEEEECCCC
T ss_pred             CCCEEEECCCC
Confidence            69999999984

>3e03_A Short chain dehydrogenase; structural genomics, PSI-2, protein structure initiative, NEW YORK structural genomix research consortium; 1.69A {Xanthomonas campestris PV}

Probab=96.88  E-value=0.0072  Score=52.27  Aligned_cols=81  Identities=17%  Similarity=0.149  Sum_probs=51.6

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcch-------HH----HHHhcCCcEE---EEcCCchhHHHHHHH
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDK-------TD----LIRQKGAWAA---LTFTNEKSLVNKVLE  226 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~-------~~----~~~~~g~~~~---~~~~~~~~~~~~i~~  226 (296)
                      .+++++|+|+++++|.++++.+ ...|++|+++++++++       .+    .+++.+....   .+..+..+..+.+.+
T Consensus         5 ~~k~~lVTGas~GIG~aia~~l-a~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~   83 (274)
T 3e03_A            5 SGKTLFITGASRGIGLAIALRA-ARDGANVAIAAKSAVANPKLPGTIHSAAAAVNAAGGQGLALKCDIREEDQVRAAVAA   83 (274)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHH-HHTTCEEEEEESCCSCCTTSCCCHHHHHHHHHHHTSEEEEEECCTTCHHHHHHHHHH
T ss_pred             CCcEEEEECCCChHHHHHHHHH-HHCCCEEEEEeccchhhhhhHHHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHH
Confidence            5789999999999999987777 4479999999998653       22    2223344322   233332333333333


Q ss_pred             HhC-CCcccEEEECCCC
Q psy1959         227 VSG-GKYANVVFEAVGG  242 (296)
Q Consensus       227 ~~~-~~g~d~vld~~g~  242 (296)
                      ... ...+|+++++.|.
T Consensus        84 ~~~~~g~iD~lvnnAG~  100 (274)
T 3e03_A           84 TVDTFGGIDILVNNASA  100 (274)
T ss_dssp             HHHHHSCCCEEEECCCC
T ss_pred             HHHHcCCCCEEEECCCc
Confidence            211 1269999999984

>3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase; ssgcid, decode, niaid, UWPPG, SBRI, structural genomics; 2.45A {Mycobacterium tuberculosis}

Probab=96.88  E-value=0.002  Score=56.10  Aligned_cols=81  Identities=21%  Similarity=0.221  Sum_probs=54.4

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHH-hcCCc-EE--EEcCCchhHHHHHHHHhC-CCcccE
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIR-QKGAW-AA--LTFTNEKSLVNKVLEVSG-GKYANV  235 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~-~~g~~-~~--~~~~~~~~~~~~i~~~~~-~~g~d~  235 (296)
                      .|++++|+|+++++|.++++.+ ...|++|+++++++++.+.+. +++.. ..  .+..+..+..+.+.+... -.++|+
T Consensus        28 ~gk~vlVTGas~gIG~aia~~l-a~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~  106 (277)
T 3gvc_A           28 AGKVAIVTGAGAGIGLAVARRL-ADEGCHVLCADIDGDAADAAATKIGCGAAACRVDVSDEQQIIAMVDACVAAFGGVDK  106 (277)
T ss_dssp             TTCEEEETTTTSTHHHHHHHHH-HHTTCEEEEEESSHHHHHHHHHHHCSSCEEEECCTTCHHHHHHHHHHHHHHHSSCCE
T ss_pred             CCCEEEEECCCcHHHHHHHHHH-HHCCCEEEEEeCCHHHHHHHHHHcCCcceEEEecCCCHHHHHHHHHHHHHHcCCCCE
Confidence            5789999999999999987777 447999999999988776654 34432 22  233442333333332211 126999


Q ss_pred             EEECCCC
Q psy1959         236 VFEAVGG  242 (296)
Q Consensus       236 vld~~g~  242 (296)
                      ++++.|.
T Consensus       107 lvnnAg~  113 (277)
T 3gvc_A          107 LVANAGV  113 (277)
T ss_dssp             EEECCCC
T ss_pred             EEECCCC
Confidence            9999984

>3svt_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 2.00A {Mycobacterium ulcerans}

Probab=96.87  E-value=0.002  Score=56.00  Aligned_cols=81  Identities=27%  Similarity=0.248  Sum_probs=53.3

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHH----HhcCC---cEE---EEcCCchhHHHHHHHHhC-
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLI----RQKGA---WAA---LTFTNEKSLVNKVLEVSG-  229 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~----~~~g~---~~~---~~~~~~~~~~~~i~~~~~-  229 (296)
                      .+++++|+|++|++|.++++.+ ...|++|+++++++++.+.+    ++.+.   ...   .+..+..+..+.+.+... 
T Consensus        10 ~~k~vlVTGas~gIG~aia~~l-~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~   88 (281)
T 3svt_A           10 QDRTYLVTGGGSGIGKGVAAGL-VAAGASVMIVGRNPDKLAGAVQELEALGANGGAIRYEPTDITNEDETARAVDAVTAW   88 (281)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHH-HHTTCEEEEEESCHHHHHHHHHHHHTTCCSSCEEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHH-HHCCCEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEeCCCCCHHHHHHHHHHHHHH
Confidence            5789999999999999988777 45799999999988776544    33333   222   233332333333333211 


Q ss_pred             CCcccEEEECCCC
Q psy1959         230 GKYANVVFEAVGG  242 (296)
Q Consensus       230 ~~g~d~vld~~g~  242 (296)
                      ...+|+++++.|.
T Consensus        89 ~g~id~lv~nAg~  101 (281)
T 3svt_A           89 HGRLHGVVHCAGG  101 (281)
T ss_dssp             HSCCCEEEECCCC
T ss_pred             cCCCCEEEECCCc
Confidence            1269999999984

>1geg_A Acetoin reductase; SDR family, oxidoreductase; HET: GLC NAD; 1.70A {Klebsiella pneumoniae} SCOP: c.2.1.2

Probab=96.87  E-value=0.0033  Score=53.77  Aligned_cols=80  Identities=20%  Similarity=0.177  Sum_probs=52.4

Q ss_pred             CcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHH----hcCCcEE---EEcCCchhHHHHHHHHhC-CCcc
Q psy1959         162 KQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIR----QKGAWAA---LTFTNEKSLVNKVLEVSG-GKYA  233 (296)
Q Consensus       162 g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~----~~g~~~~---~~~~~~~~~~~~i~~~~~-~~g~  233 (296)
                      +++++|+|++|++|.++++.+ ...|++|+++++++++.+.+.    +.+....   .+..+..+..+.+.+... -.++
T Consensus         2 ~k~vlVTGas~gIG~~ia~~l-~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~i   80 (256)
T 1geg_A            2 KKVALVTGAGQGIGKAIALRL-VKDGFAVAIADYNDATAKAVASEINQAGGHAVAVKVDVSDRDQVFAAVEQARKTLGGF   80 (256)
T ss_dssp             CCEEEEETTTSHHHHHHHHHH-HHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHTTCC
T ss_pred             CCEEEEECCCChHHHHHHHHH-HHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHHhCCC
Confidence            578999999999999988877 457999999999887665442    2243322   233332333333333211 1269


Q ss_pred             cEEEECCCC
Q psy1959         234 NVVFEAVGG  242 (296)
Q Consensus       234 d~vld~~g~  242 (296)
                      |+++++.|.
T Consensus        81 d~lv~nAg~   89 (256)
T 1geg_A           81 DVIVNNAGV   89 (256)
T ss_dssp             CEEEECCCC
T ss_pred             CEEEECCCC
Confidence            999999873

>3tpc_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.34A {Sinorhizobium meliloti}

Probab=96.87  E-value=0.002  Score=55.19  Aligned_cols=81  Identities=21%  Similarity=0.165  Sum_probs=48.5

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHH-hcCCcE-E--EEcCCchhHHHHHHHHhC-CCcccE
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIR-QKGAWA-A--LTFTNEKSLVNKVLEVSG-GKYANV  235 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~-~~g~~~-~--~~~~~~~~~~~~i~~~~~-~~g~d~  235 (296)
                      .+++++|+|+++++|.+.++.+ ...|++|+++++++++.+.+. +++... .  .+..+..+..+.+.+... -..+|+
T Consensus         6 ~~k~~lVTGas~gIG~aia~~l-~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~id~   84 (257)
T 3tpc_A            6 KSRVFIVTGASSGLGAAVTRML-AQEGATVLGLDLKPPAGEEPAAELGAAVRFRNADVTNEADATAALAFAKQEFGHVHG   84 (257)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHH-HHTTCEEEEEESSCC------------CEEEECCTTCHHHHHHHHHHHHHHHSCCCE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHH-HHCCCEEEEEeCChHHHHHHHHHhCCceEEEEccCCCHHHHHHHHHHHHHHcCCCCE
Confidence            5789999999999999988777 457999999999888766543 333221 1  233332333333332211 126999


Q ss_pred             EEECCCC
Q psy1959         236 VFEAVGG  242 (296)
Q Consensus       236 vld~~g~  242 (296)
                      ++++.|.
T Consensus        85 lv~nAg~   91 (257)
T 3tpc_A           85 LVNCAGT   91 (257)
T ss_dssp             EEECCCC
T ss_pred             EEECCCC
Confidence            9999884

>4dyv_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.80A {Xanthobacter autotrophicus}

Probab=96.87  E-value=0.002  Score=55.97  Aligned_cols=81  Identities=20%  Similarity=0.115  Sum_probs=53.8

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHH-hcCCc-EE--EEcCCchhHHHHHHHHhC-CCcccE
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIR-QKGAW-AA--LTFTNEKSLVNKVLEVSG-GKYANV  235 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~-~~g~~-~~--~~~~~~~~~~~~i~~~~~-~~g~d~  235 (296)
                      .+++++|+|+++++|.++++.+ ...|++|+++++++++.+.+. +++.. ..  .+..+..+..+.+.+... -.++|+
T Consensus        27 ~~k~~lVTGas~GIG~aia~~l-a~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~  105 (272)
T 4dyv_A           27 GKKIAIVTGAGSGVGRAVAVAL-AGAGYGVALAGRRLDALQETAAEIGDDALCVPTDVTDPDSVRALFTATVEKFGRVDV  105 (272)
T ss_dssp             -CCEEEETTTTSHHHHHHHHHH-HHTTCEEEEEESCHHHHHHHHHHHTSCCEEEECCTTSHHHHHHHHHHHHHHHSCCCE
T ss_pred             CCCEEEEeCCCcHHHHHHHHHH-HHCCCEEEEEECCHHHHHHHHHHhCCCeEEEEecCCCHHHHHHHHHHHHHHcCCCCE
Confidence            5789999999999999987777 457999999999988876654 34322 22  233332333333332211 126999


Q ss_pred             EEECCCC
Q psy1959         236 VFEAVGG  242 (296)
Q Consensus       236 vld~~g~  242 (296)
                      ++++.|.
T Consensus       106 lVnnAg~  112 (272)
T 4dyv_A          106 LFNNAGT  112 (272)
T ss_dssp             EEECCCC
T ss_pred             EEECCCC
Confidence            9999884

>2ekp_A 2-deoxy-D-gluconate 3-dehydrogenase; structural genomics, NPPSFA, nation project on protein structural and functional analyses; HET: NAD; 1.15A {Thermus thermophilus} PDB: 1x1e_A* 2ekq_A

Probab=96.86  E-value=0.0025  Score=53.93  Aligned_cols=77  Identities=16%  Similarity=0.098  Sum_probs=50.6

Q ss_pred             CcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCcEE-EEcCCchhHHHHHHHHhC-CCcccEEEEC
Q psy1959         162 KQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAA-LTFTNEKSLVNKVLEVSG-GKYANVVFEA  239 (296)
Q Consensus       162 g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~i~~~~~-~~g~d~vld~  239 (296)
                      +++++|+|++|++|.+.++.+ ...|++|+++++++++  ..++++...+ .+..+ .+..+.+.+... -.++|+++++
T Consensus         2 ~k~vlVTGas~giG~~~a~~l-~~~G~~V~~~~r~~~~--~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~g~id~lv~~   77 (239)
T 2ekp_A            2 ERKALVTGGSRGIGRAIAEAL-VARGYRVAIASRNPEE--AAQSLGAVPLPTDLEK-DDPKGLVKRALEALGGLHVLVHA   77 (239)
T ss_dssp             CCEEEEETTTSHHHHHHHHHH-HHTTCEEEEEESSCHH--HHHHHTCEEEECCTTT-SCHHHHHHHHHHHHTSCCEEEEC
T ss_pred             CCEEEEeCCCcHHHHHHHHHH-HHCCCEEEEEeCCHHH--HHHhhCcEEEecCCch-HHHHHHHHHHHHHcCCCCEEEEC
Confidence            578999999999999988877 4579999999998776  2334453221 23333 333333332211 1269999999


Q ss_pred             CCC
Q psy1959         240 VGG  242 (296)
Q Consensus       240 ~g~  242 (296)
                      .|.
T Consensus        78 Ag~   80 (239)
T 2ekp_A           78 AAV   80 (239)
T ss_dssp             CCC
T ss_pred             CCC
Confidence            884

>2zat_A Dehydrogenase/reductase SDR family member 4; alpha/beta, oxidoreductase; HET: NAP; 1.50A {Sus scrofa} PDB: 3o4r_A*

Probab=96.86  E-value=0.0027  Score=54.36  Aligned_cols=81  Identities=17%  Similarity=0.165  Sum_probs=52.9

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHH----HhcCCcEE---EEcCCchhHHHHHHHHhC-CCc
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLI----RQKGAWAA---LTFTNEKSLVNKVLEVSG-GKY  232 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~----~~~g~~~~---~~~~~~~~~~~~i~~~~~-~~g  232 (296)
                      .+++++|+|++|++|.++++.+ ...|++|+++++++++.+.+    ++.+....   .+..+..+..+.+.+... -.+
T Consensus        13 ~~k~vlVTGas~gIG~~ia~~l-~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~   91 (260)
T 2zat_A           13 ENKVALVTASTDGIGLAIARRL-AQDGAHVVVSSRKQENVDRTVATLQGEGLSVTGTVCHVGKAEDRERLVAMAVNLHGG   91 (260)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHH-HHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CCCEEEEECCCcHHHHHHHHHH-HHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence            5789999999999999988877 44799999999988766543    22343322   223332333333332211 126


Q ss_pred             ccEEEECCCC
Q psy1959         233 ANVVFEAVGG  242 (296)
Q Consensus       233 ~d~vld~~g~  242 (296)
                      +|+++++.|.
T Consensus        92 iD~lv~~Ag~  101 (260)
T 2zat_A           92 VDILVSNAAV  101 (260)
T ss_dssp             CCEEEECCCC
T ss_pred             CCEEEECCCC
Confidence            9999999884

>1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural genomics, structural genomics consortium, oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP: c.2.1.2

Probab=96.85  E-value=0.002  Score=55.78  Aligned_cols=81  Identities=19%  Similarity=0.281  Sum_probs=52.9

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHH----hcCC-cEE----EEcCCchhHHHHHHHHhC-C
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIR----QKGA-WAA----LTFTNEKSLVNKVLEVSG-G  230 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~----~~g~-~~~----~~~~~~~~~~~~i~~~~~-~  230 (296)
                      ++++++|+|++|++|.++++.+ ...|++|++++++.++.+.+.    +.+. ..+    .+..+..++.+.+.++.. .
T Consensus        31 ~~k~vlVTGasggIG~~la~~l-~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~  109 (279)
T 1xg5_A           31 RDRLALVTGASGGIGAAVARAL-VQQGLKVVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLSNEEDILSMFSAIRSQH  109 (279)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHH-HHTTCEEEEEESCHHHHHHHHHHHHHTTCSSEEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCchHHHHHHHHH-HHCCCEEEEEECChHHHHHHHHHHHhcCCCceEEEEEecCCCHHHHHHHHHHHHHhC
Confidence            5789999999999999988877 457999999999877665443    2332 121    233332333333332211 1


Q ss_pred             CcccEEEECCCC
Q psy1959         231 KYANVVFEAVGG  242 (296)
Q Consensus       231 ~g~d~vld~~g~  242 (296)
                      .++|++|++.|.
T Consensus       110 g~iD~vi~~Ag~  121 (279)
T 1xg5_A          110 SGVDICINNAGL  121 (279)
T ss_dssp             CCCSEEEECCCC
T ss_pred             CCCCEEEECCCC
Confidence            269999999983

>2b4q_A Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier-protein] reductase; RHLG-NADP complex, oxidoreductase; HET: NAP; 2.30A {Pseudomonas aeruginosa}

Probab=96.85  E-value=0.0023  Score=55.59  Aligned_cols=80  Identities=13%  Similarity=0.115  Sum_probs=52.7

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHH-hc---CCcEE---EEcCCchhHHHHHHHHhC-CCc
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIR-QK---GAWAA---LTFTNEKSLVNKVLEVSG-GKY  232 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~-~~---g~~~~---~~~~~~~~~~~~i~~~~~-~~g  232 (296)
                      .+++++|+|++|++|.++++.+ ...|++|+++++++++.+.+. ++   + ...   .+..+..+..+.+.+... -.+
T Consensus        28 ~~k~vlVTGas~gIG~aia~~L-~~~G~~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~Dv~d~~~v~~~~~~~~~~~g~  105 (276)
T 2b4q_A           28 AGRIALVTGGSRGIGQMIAQGL-LEAGARVFICARDAEACADTATRLSAYG-DCQAIPADLSSEAGARRLAQALGELSAR  105 (276)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHH-HHTTCEEEEECSCHHHHHHHHHHHTTSS-CEEECCCCTTSHHHHHHHHHHHHHHCSC
T ss_pred             CCCEEEEeCCCChHHHHHHHHH-HHCCCEEEEEeCCHHHHHHHHHHHHhcC-ceEEEEeeCCCHHHHHHHHHHHHHhcCC
Confidence            5789999999999999988877 457999999999887765443 22   3 222   223332333333333211 236


Q ss_pred             ccEEEECCCC
Q psy1959         233 ANVVFEAVGG  242 (296)
Q Consensus       233 ~d~vld~~g~  242 (296)
                      +|+++++.|.
T Consensus       106 iD~lvnnAg~  115 (276)
T 2b4q_A          106 LDILVNNAGT  115 (276)
T ss_dssp             CSEEEECCCC
T ss_pred             CCEEEECCCC
Confidence            9999999983

>3rih_A Short chain dehydrogenase or reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PG5; 2.15A {Mycobacterium abscessus}

Probab=96.85  E-value=0.0062  Score=53.39  Aligned_cols=81  Identities=20%  Similarity=0.163  Sum_probs=53.5

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHh----cC-CcE-E--EEcCCchhHHHHHHHHhC-CC
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQ----KG-AWA-A--LTFTNEKSLVNKVLEVSG-GK  231 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~----~g-~~~-~--~~~~~~~~~~~~i~~~~~-~~  231 (296)
                      .+++++|+|++|++|.++++.+ ...|++|+++++++++.+.+.+    .+ ... .  .+..+..+..+.+.+... -.
T Consensus        40 ~~k~vlVTGas~GIG~aia~~l-a~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g  118 (293)
T 3rih_A           40 SARSVLVTGGTKGIGRGIATVF-ARAGANVAVAARSPRELSSVTAELGELGAGNVIGVRLDVSDPGSCADAARTVVDAFG  118 (293)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHH-HHTTCEEEEEESSGGGGHHHHHHHTTSSSSCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEeCCCcHHHHHHHHHH-HHCCCEEEEEECCHHHHHHHHHHHHhhCCCcEEEEEEeCCCHHHHHHHHHHHHHHcC
Confidence            5789999999999999988777 4579999999999887665532    23 122 2  233332333333332211 12


Q ss_pred             cccEEEECCCC
Q psy1959         232 YANVVFEAVGG  242 (296)
Q Consensus       232 g~d~vld~~g~  242 (296)
                      .+|+++++.|.
T Consensus       119 ~iD~lvnnAg~  129 (293)
T 3rih_A          119 ALDVVCANAGI  129 (293)
T ss_dssp             CCCEEEECCCC
T ss_pred             CCCEEEECCCC
Confidence            69999999884

>1yxm_A Pecra, peroxisomal trans 2-enoyl COA reductase; perioxisomes, fatty acid synthesis, short-chain dehydrogenases/reductases, structural genomics; HET: ADE; 1.90A {Homo sapiens} SCOP: c.2.1.2

Probab=96.85  E-value=0.0047  Score=54.02  Aligned_cols=80  Identities=20%  Similarity=0.163  Sum_probs=52.1

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHh---------cCCcEE---EEcCCchhHHHHHHHHh
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQ---------KGAWAA---LTFTNEKSLVNKVLEVS  228 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~---------~g~~~~---~~~~~~~~~~~~i~~~~  228 (296)
                      .+++++|+|++|++|.++++.+ ...|++|++++++.++.+.+.+         .+....   .+..+..++.+.+.+..
T Consensus        17 ~~k~vlVTGasggIG~~la~~l-~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~   95 (303)
T 1yxm_A           17 QGQVAIVTGGATGIGKAIVKEL-LELGSNVVIASRKLERLKSAADELQANLPPTKQARVIPIQCNIRNEEEVNNLVKSTL   95 (303)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHH-HHTTCEEEEEESCHHHHHHHHHHHHHTSCTTCCCCEEEEECCTTCHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHH-HHCCCEEEEEeCCHHHHHHHHHHHHhhccccCCccEEEEecCCCCHHHHHHHHHHHH
Confidence            4789999999999999988777 4479999999998876654322         232222   22333233333333321


Q ss_pred             C-CCcccEEEECCC
Q psy1959         229 G-GKYANVVFEAVG  241 (296)
Q Consensus       229 ~-~~g~d~vld~~g  241 (296)
                      . -..+|++|++.|
T Consensus        96 ~~~g~id~li~~Ag  109 (303)
T 1yxm_A           96 DTFGKINFLVNNGG  109 (303)
T ss_dssp             HHHSCCCEEEECCC
T ss_pred             HHcCCCCEEEECCC
Confidence            1 126999999998

>3t7c_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.95A {Mycobacterium avium}

Probab=96.85  E-value=0.0086  Score=52.49  Aligned_cols=81  Identities=14%  Similarity=0.090  Sum_probs=51.6

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCC------------cchHHH----HHhcCCcEE---EEcCCchhHH
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNS------------EDKTDL----IRQKGAWAA---LTFTNEKSLV  221 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~------------~~~~~~----~~~~g~~~~---~~~~~~~~~~  221 (296)
                      .|++++|+|+++++|.++++.+ ...|++|++++++            +++.+.    +++.+....   .+..+..+..
T Consensus        27 ~gk~~lVTGas~GIG~aia~~l-a~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~  105 (299)
T 3t7c_A           27 EGKVAFITGAARGQGRSHAITL-AREGADIIAIDVCKQLDGVKLPMSTPDDLAETVRQVEALGRRIIASQVDVRDFDAMQ  105 (299)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHH-HHTTCEEEEEECCSCCTTCCSCCCCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHH-HHCCCEEEEEecccccccccccccCHHHHHHHHHHHHhcCCceEEEECCCCCHHHHH
Confidence            6789999999999999987777 4579999999876            333332    334454333   2333323333


Q ss_pred             HHHHHHhC-CCcccEEEECCCC
Q psy1959         222 NKVLEVSG-GKYANVVFEAVGG  242 (296)
Q Consensus       222 ~~i~~~~~-~~g~d~vld~~g~  242 (296)
                      +.+.+... -..+|+++++.|.
T Consensus       106 ~~~~~~~~~~g~iD~lv~nAg~  127 (299)
T 3t7c_A          106 AAVDDGVTQLGRLDIVLANAAL  127 (299)
T ss_dssp             HHHHHHHHHHSCCCEEEECCCC
T ss_pred             HHHHHHHHHhCCCCEEEECCCC
Confidence            33332211 1269999999883

>1hxh_A 3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-beta, rossmann fold, short-chain dehydrogenase, oxidoreductase; 1.22A {Comamonas testosteroni} SCOP: c.2.1.2

Probab=96.83  E-value=0.0028  Score=54.17  Aligned_cols=81  Identities=21%  Similarity=0.177  Sum_probs=53.9

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHH-hcCCcEEE---EcCCchhHHHHHHHHhC-CCcccE
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIR-QKGAWAAL---TFTNEKSLVNKVLEVSG-GKYANV  235 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~-~~g~~~~~---~~~~~~~~~~~i~~~~~-~~g~d~  235 (296)
                      .+++++|+|++|++|.+.++.+ ...|++|+++++++++.+.+. +++....+   +..+..+..+.+.+... -..+|+
T Consensus         5 ~~k~vlVTGas~giG~~ia~~l-~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~id~   83 (253)
T 1hxh_A            5 QGKVALVTGGASGVGLEVVKLL-LGEGAKVAFSDINEAAGQQLAAELGERSMFVRHDVSSEADWTLVMAAVQRRLGTLNV   83 (253)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHH-HHTTCEEEEECSCHHHHHHHHHHHCTTEEEECCCTTCHHHHHHHHHHHHHHHCSCCE
T ss_pred             CCCEEEEeCCCcHHHHHHHHHH-HHCCCEEEEEeCCHHHHHHHHHHcCCceEEEEccCCCHHHHHHHHHHHHHHcCCCCE
Confidence            4789999999999999988877 457999999999888776554 33433222   33332333333333211 126899


Q ss_pred             EEECCCC
Q psy1959         236 VFEAVGG  242 (296)
Q Consensus       236 vld~~g~  242 (296)
                      ++++.|.
T Consensus        84 lv~~Ag~   90 (253)
T 1hxh_A           84 LVNNAGI   90 (253)
T ss_dssp             EEECCCC
T ss_pred             EEECCCC
Confidence            9999984

>3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics center for infectious disease, ssgcid, oxidoreductase, structural genomics; 2.20A {Brucella melitensis}

Probab=96.83  E-value=0.0025  Score=54.64  Aligned_cols=81  Identities=20%  Similarity=0.193  Sum_probs=53.5

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHH----hcCCcEE---EEcCCchhHHHHHHHHhC-CCc
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIR----QKGAWAA---LTFTNEKSLVNKVLEVSG-GKY  232 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~----~~g~~~~---~~~~~~~~~~~~i~~~~~-~~g  232 (296)
                      .+++++|+|+++++|.+.++.+ ...|++|+++++++++.+.+.    +.+....   .+..+..+..+.+.+... -.+
T Consensus        11 ~~k~vlVTGas~gIG~~ia~~l-~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~   89 (256)
T 3gaf_A           11 NDAVAIVTGAAAGIGRAIAGTF-AKAGASVVVTDLKSEGAEAVAAAIRQAGGKAIGLECNVTDEQHREAVIKAALDQFGK   89 (256)
T ss_dssp             TTCEEEECSCSSHHHHHHHHHH-HHHTCEEEEEESSHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CCCEEEEECCCCHHHHHHHHHH-HHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence            5789999999999999977766 346999999999888765543    3344332   233332333333332211 126


Q ss_pred             ccEEEECCCC
Q psy1959         233 ANVVFEAVGG  242 (296)
Q Consensus       233 ~d~vld~~g~  242 (296)
                      +|+++++.|.
T Consensus        90 id~lv~nAg~   99 (256)
T 3gaf_A           90 ITVLVNNAGG   99 (256)
T ss_dssp             CCEEEECCCC
T ss_pred             CCEEEECCCC
Confidence            9999999984

>3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.75A {Mycobacterium smegmatis} SCOP: c.2.1.0

Probab=96.83  E-value=0.0063  Score=52.27  Aligned_cols=81  Identities=17%  Similarity=0.086  Sum_probs=53.2

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHH----hcC-CcEE-E--EcCCchhHHHHHHHHhC-CC
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIR----QKG-AWAA-L--TFTNEKSLVNKVLEVSG-GK  231 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~----~~g-~~~~-~--~~~~~~~~~~~i~~~~~-~~  231 (296)
                      .|++++|+|+++++|.+.++.+ ...|++|+++++++++.+.+.    +.+ .... +  +..+..+..+.+.+... -.
T Consensus         9 ~~k~vlVTGas~gIG~aia~~l-~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g   87 (262)
T 3pk0_A            9 QGRSVVVTGGTKGIGRGIATVF-ARAGANVAVAGRSTADIDACVADLDQLGSGKVIGVQTDVSDRAQCDALAGRAVEEFG   87 (262)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHH-HHTTCEEEEEESCHHHHHHHHHHHHTTSSSCEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEECCCcHHHHHHHHHH-HHCCCEEEEEeCCHHHHHHHHHHHHhhCCCcEEEEEcCCCCHHHHHHHHHHHHHHhC
Confidence            5789999999999999988777 457999999999988765543    233 2222 2  33332333333332211 12


Q ss_pred             cccEEEECCCC
Q psy1959         232 YANVVFEAVGG  242 (296)
Q Consensus       232 g~d~vld~~g~  242 (296)
                      ++|+++++.|.
T Consensus        88 ~id~lvnnAg~   98 (262)
T 3pk0_A           88 GIDVVCANAGV   98 (262)
T ss_dssp             CCSEEEECCCC
T ss_pred             CCCEEEECCCC
Confidence            69999999983

>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*

Probab=96.83  E-value=0.0037  Score=55.06  Aligned_cols=98  Identities=15%  Similarity=0.168  Sum_probs=69.5

Q ss_pred             HHcCCCCCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhc----CCcEE-EEcCCchhHHHHHHHHhC
Q psy1959         155 RHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQK----GAWAA-LTFTNEKSLVNKVLEVSG  229 (296)
Q Consensus       155 ~~~~~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~----g~~~~-~~~~~~~~~~~~i~~~~~  229 (296)
                      ..++++++++||..|+ |+.++.++.+| +..+++|+.++.+++..+.+++.    |.+.+ +...+..+       +. 
T Consensus       116 ~la~l~~g~rVLDIGc-G~G~~ta~~lA-~~~ga~V~gIDis~~~l~~Ar~~~~~~gl~~v~~v~gDa~~-------l~-  185 (298)
T 3fpf_A          116 ALGRFRRGERAVFIGG-GPLPLTGILLS-HVYGMRVNVVEIEPDIAELSRKVIEGLGVDGVNVITGDETV-------ID-  185 (298)
T ss_dssp             HHTTCCTTCEEEEECC-CSSCHHHHHHH-HTTCCEEEEEESSHHHHHHHHHHHHHHTCCSEEEEESCGGG-------GG-
T ss_pred             HHcCCCCcCEEEEECC-CccHHHHHHHH-HccCCEEEEEECCHHHHHHHHHHHHhcCCCCeEEEECchhh-------CC-
Confidence            4578999999999997 76667777778 55799999999999988887754    54222 22222122       11 


Q ss_pred             CCcccEEEECCCC----ccHHHHHHHhhccCceEEeec
Q psy1959         230 GKYANVVFEAVGG----EDKTDLIRQKGAWAALTFTNE  263 (296)
Q Consensus       230 ~~g~d~vld~~g~----~~~~~~~~~lg~~~g~~~~~~  263 (296)
                      ...+|+|+.+...    ..+..+.+.| +++|++.+..
T Consensus       186 d~~FDvV~~~a~~~d~~~~l~el~r~L-kPGG~Lvv~~  222 (298)
T 3fpf_A          186 GLEFDVLMVAALAEPKRRVFRNIHRYV-DTETRIIYRT  222 (298)
T ss_dssp             GCCCSEEEECTTCSCHHHHHHHHHHHC-CTTCEEEEEE
T ss_pred             CCCcCEEEECCCccCHHHHHHHHHHHc-CCCcEEEEEc
Confidence            3579999976553    2577788888 8999886543

>3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET: NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A*

Probab=96.82  E-value=0.01  Score=51.01  Aligned_cols=81  Identities=14%  Similarity=0.097  Sum_probs=52.9

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHh-----cCCc-EE---EEcCCchhHHHHHHHHhC-C
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQ-----KGAW-AA---LTFTNEKSLVNKVLEVSG-G  230 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~-----~g~~-~~---~~~~~~~~~~~~i~~~~~-~  230 (296)
                      .+++++|+|+++++|.++++.+ ...|++|+++++++++.+.+.+     .+.. ..   .+..+..+..+.+.+... -
T Consensus         7 ~~k~~lVTGas~GIG~aia~~l-~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~   85 (265)
T 3lf2_A            7 SEAVAVVTGGSSGIGLATVELL-LEAGAAVAFCARDGERLRAAESALRQRFPGARLFASVCDVLDALQVRAFAEACERTL   85 (265)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHH-HHTTCEEEEEESCHHHHHHHHHHHHHHSTTCCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCChHHHHHHHHH-HHCCCEEEEEeCCHHHHHHHHHHHHHhcCCceEEEEeCCCCCHHHHHHHHHHHHHHc
Confidence            5789999999999999988777 4579999999998887655432     2222 22   233332333333332211 1


Q ss_pred             CcccEEEECCCC
Q psy1959         231 KYANVVFEAVGG  242 (296)
Q Consensus       231 ~g~d~vld~~g~  242 (296)
                      ..+|+++++.|.
T Consensus        86 g~id~lvnnAg~   97 (265)
T 3lf2_A           86 GCASILVNNAGQ   97 (265)
T ss_dssp             CSCSEEEECCCC
T ss_pred             CCCCEEEECCCC
Confidence            269999999984

>3s55_A Putative short-chain dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 2.10A {Mycobacterium abscessus} SCOP: c.2.1.0

Probab=96.82  E-value=0.0041  Score=53.92  Aligned_cols=81  Identities=16%  Similarity=0.137  Sum_probs=51.4

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCC------------cchHHH----HHhcCCcEEE---EcCCchhHH
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNS------------EDKTDL----IRQKGAWAAL---TFTNEKSLV  221 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~------------~~~~~~----~~~~g~~~~~---~~~~~~~~~  221 (296)
                      .+++++|+|+++++|.++++.+ ...|++|++++++            .++.+.    +++.+.....   +..+..+..
T Consensus         9 ~~k~~lVTGas~gIG~a~a~~l-~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~   87 (281)
T 3s55_A            9 EGKTALITGGARGMGRSHAVAL-AEAGADIAICDRCENSDVVGYPLATADDLAETVALVEKTGRRCISAKVDVKDRAALE   87 (281)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHH-HHTTCEEEEEECCSCCTTCSSCCCCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHH
T ss_pred             CCCEEEEeCCCchHHHHHHHHH-HHCCCeEEEEeCCccccccccccccHHHHHHHHHHHHhcCCeEEEEeCCCCCHHHHH
Confidence            5789999999999999988777 4579999999986            233322    2334543322   333323333


Q ss_pred             HHHHHHhC-CCcccEEEECCCC
Q psy1959         222 NKVLEVSG-GKYANVVFEAVGG  242 (296)
Q Consensus       222 ~~i~~~~~-~~g~d~vld~~g~  242 (296)
                      +.+.+... -.++|+++++.|.
T Consensus        88 ~~~~~~~~~~g~id~lv~nAg~  109 (281)
T 3s55_A           88 SFVAEAEDTLGGIDIAITNAGI  109 (281)
T ss_dssp             HHHHHHHHHHTCCCEEEECCCC
T ss_pred             HHHHHHHHhcCCCCEEEECCCC
Confidence            33332211 1269999999984

>3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A}

Probab=96.82  E-value=0.0012  Score=55.69  Aligned_cols=84  Identities=15%  Similarity=0.149  Sum_probs=55.5

Q ss_pred             CcEEEEEcCCCcHHHHHHHHHHHhCC-CEEEEEeCCcchHHHHHhcCCcEE-EEcCCchhHHHHHHHHhCCCcccEEEEC
Q psy1959         162 KQTVLVTAAGGGLGLAAVDMATKIYK-AKVIGVCNSEDKTDLIRQKGAWAA-LTFTNEKSLVNKVLEVSGGKYANVVFEA  239 (296)
Q Consensus       162 g~~vlI~Ga~g~vG~aa~~la~~~~g-~~Vi~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~i~~~~~~~g~d~vld~  239 (296)
                      -++|+|+|++|++|.++++.+ ...| ++|+++++++++.+.+...++..+ .+..+    .+.+.++..  ++|++|.+
T Consensus        23 mk~vlVtGatG~iG~~l~~~L-~~~G~~~V~~~~R~~~~~~~~~~~~~~~~~~Dl~d----~~~~~~~~~--~~D~vv~~   95 (236)
T 3qvo_A           23 MKNVLILGAGGQIARHVINQL-ADKQTIKQTLFARQPAKIHKPYPTNSQIIMGDVLN----HAALKQAMQ--GQDIVYAN   95 (236)
T ss_dssp             CEEEEEETTTSHHHHHHHHHH-TTCTTEEEEEEESSGGGSCSSCCTTEEEEECCTTC----HHHHHHHHT--TCSEEEEE
T ss_pred             ccEEEEEeCCcHHHHHHHHHH-HhCCCceEEEEEcChhhhcccccCCcEEEEecCCC----HHHHHHHhc--CCCEEEEc
Confidence            468999999999999998888 5578 899999998877554322222211 22223    234444443  68999999


Q ss_pred             CCCcc----HHHHHHHh
Q psy1959         240 VGGED----KTDLIRQK  252 (296)
Q Consensus       240 ~g~~~----~~~~~~~l  252 (296)
                      .|...    .+.+++.+
T Consensus        96 a~~~~~~~~~~~~~~~~  112 (236)
T 3qvo_A           96 LTGEDLDIQANSVIAAM  112 (236)
T ss_dssp             CCSTTHHHHHHHHHHHH
T ss_pred             CCCCchhHHHHHHHHHH
Confidence            98743    23345555

>1zk4_A R-specific alcohol dehydrogenase; short chain reductases/dehydrogenases, magnesium dependence, oxidoreductase; HET: NAP; 1.00A {Lactobacillus brevis} SCOP: c.2.1.2 PDB: 1nxq_A* 1zjy_A* 1zjz_A* 1zk0_A* 1zk1_A* 1zk2_A 1zk3_A

Probab=96.82  E-value=0.0025  Score=54.06  Aligned_cols=81  Identities=15%  Similarity=0.084  Sum_probs=52.6

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHH-hcC--Cc-EEE--EcCCchhHHHHHHHHhC-CCcc
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIR-QKG--AW-AAL--TFTNEKSLVNKVLEVSG-GKYA  233 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~-~~g--~~-~~~--~~~~~~~~~~~i~~~~~-~~g~  233 (296)
                      ++++++|+|++|++|.++++.+ ...|++|+++++++++.+.+. ++.  .. ..+  +..+..++.+.+.+... -..+
T Consensus         5 ~~k~vlVtGasggiG~~~a~~l-~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i   83 (251)
T 1zk4_A            5 DGKVAIITGGTLGIGLAIATKF-VEEGAKVMITGRHSDVGEKAAKSVGTPDQIQFFQHDSSDEDGWTKLFDATEKAFGPV   83 (251)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHH-HHTTCEEEEEESCHHHHHHHHHHHCCTTTEEEEECCTTCHHHHHHHHHHHHHHHSSC
T ss_pred             CCcEEEEeCCCChHHHHHHHHH-HHCCCEEEEEeCCHHHHHHHHHHhhccCceEEEECCCCCHHHHHHHHHHHHHHhCCC
Confidence            5789999999999999988877 447999999999887765543 222  11 222  33332333333333211 1268


Q ss_pred             cEEEECCCC
Q psy1959         234 NVVFEAVGG  242 (296)
Q Consensus       234 d~vld~~g~  242 (296)
                      |+++++.|.
T Consensus        84 d~li~~Ag~   92 (251)
T 1zk4_A           84 STLVNNAGI   92 (251)
T ss_dssp             CEEEECCCC
T ss_pred             CEEEECCCC
Confidence            999999883

>2a4k_A 3-oxoacyl-[acyl carrier protein] reductase; reductase,hyperthermophIle, structural genomics, PSI, protei structure initiative; 2.30A {Thermus thermophilus} SCOP: c.2.1.2

Probab=96.82  E-value=0.0033  Score=54.15  Aligned_cols=81  Identities=23%  Similarity=0.139  Sum_probs=54.1

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHh-cCCcEE---EEcCCchhHHHHHHHHhC-CCcccE
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQ-KGAWAA---LTFTNEKSLVNKVLEVSG-GKYANV  235 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~-~g~~~~---~~~~~~~~~~~~i~~~~~-~~g~d~  235 (296)
                      .+++++|+|++|++|.++++.+ ...|++|+++++++++.+.+.+ ++....   .+..+..+..+.+.+... -..+|+
T Consensus         5 ~~k~vlITGas~gIG~aia~~l-~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~iD~   83 (263)
T 2a4k_A            5 SGKTILVTGAASGIGRAALDLF-AREGASLVAVDREERLLAEAVAALEAEAIAVVADVSDPKAVEAVFAEALEEFGRLHG   83 (263)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHH-HHTTCEEEEEESCHHHHHHHHHTCCSSEEEEECCTTSHHHHHHHHHHHHHHHSCCCE
T ss_pred             CCCEEEEECCCCHHHHHHHHHH-HHCCCEEEEEeCCHHHHHHHHHHhcCceEEEEcCCCCHHHHHHHHHHHHHHcCCCcE
Confidence            4689999999999999988877 4579999999999887766543 332222   233332333333333211 126899


Q ss_pred             EEECCCC
Q psy1959         236 VFEAVGG  242 (296)
Q Consensus       236 vld~~g~  242 (296)
                      ++++.|.
T Consensus        84 lvnnAg~   90 (263)
T 2a4k_A           84 VAHFAGV   90 (263)
T ss_dssp             EEEGGGG
T ss_pred             EEECCCC
Confidence            9999874

>2uvd_A 3-oxoacyl-(acyl-carrier-protein) reductase; beta-ketoacyl- (acyl carrier protein) reductase, short-chain dehydrogenase/reductase (SDR); 2.4A {Bacillus anthracis}

Probab=96.82  E-value=0.003  Score=53.67  Aligned_cols=81  Identities=21%  Similarity=0.216  Sum_probs=52.4

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeC-CcchHHHH----HhcCCcEE---EEcCCchhHHHHHHHHhC-CC
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCN-SEDKTDLI----RQKGAWAA---LTFTNEKSLVNKVLEVSG-GK  231 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~-~~~~~~~~----~~~g~~~~---~~~~~~~~~~~~i~~~~~-~~  231 (296)
                      .+++++|+|++|++|.+.++.+ ...|++|+++++ ++++.+.+    ++.+....   .+..+..+..+.+.+... -.
T Consensus         3 ~~k~vlVTGas~giG~~ia~~l-~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g   81 (246)
T 2uvd_A            3 KGKVALVTGASRGIGRAIAIDL-AKQGANVVVNYAGNEQKANEVVDEIKKLGSDAIAVRADVANAEDVTNMVKQTVDVFG   81 (246)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHH-HHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEECCCcHHHHHHHHHH-HHCCCEEEEEeCCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence            4689999999999999988877 457999999998 66665443    22343322   233332333333332211 12


Q ss_pred             cccEEEECCCC
Q psy1959         232 YANVVFEAVGG  242 (296)
Q Consensus       232 g~d~vld~~g~  242 (296)
                      ++|+++++.|.
T Consensus        82 ~id~lv~nAg~   92 (246)
T 2uvd_A           82 QVDILVNNAGV   92 (246)
T ss_dssp             CCCEEEECCCC
T ss_pred             CCCEEEECCCC
Confidence            69999999984

>2c07_A 3-oxoacyl-(acyl-carrier protein) reductase; oxidoreductase, FABG, short-chain alcohol reductase, fatty acid biosynthesis, apicoplast; 1.5A {Plasmodium falciparum} SCOP: c.2.1.2

Probab=96.81  E-value=0.0039  Score=54.19  Aligned_cols=81  Identities=19%  Similarity=0.271  Sum_probs=53.4

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHH----hcCCcEE---EEcCCchhHHHHHHHHh-CCCc
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIR----QKGAWAA---LTFTNEKSLVNKVLEVS-GGKY  232 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~----~~g~~~~---~~~~~~~~~~~~i~~~~-~~~g  232 (296)
                      .+++++|+|++|++|.++++.+ ...|++|+++++++++.+.+.    +.+....   .+..+..++.+.+.+.. ...+
T Consensus        43 ~~k~vlITGasggIG~~la~~L-~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~~~~  121 (285)
T 2c07_A           43 ENKVALVTGAGRGIGREIAKML-AKSVSHVICISRTQKSCDSVVDEIKSFGYESSGYAGDVSKKEEISEVINKILTEHKN  121 (285)
T ss_dssp             SSCEEEEESTTSHHHHHHHHHH-TTTSSEEEEEESSHHHHHHHHHHHHTTTCCEEEEECCTTCHHHHHHHHHHHHHHCSC
T ss_pred             CCCEEEEECCCcHHHHHHHHHH-HHcCCEEEEEcCCHHHHHHHHHHHHhcCCceeEEECCCCCHHHHHHHHHHHHHhcCC
Confidence            4689999999999999988887 557999999888877655432    2344332   23333233333333321 1236


Q ss_pred             ccEEEECCCC
Q psy1959         233 ANVVFEAVGG  242 (296)
Q Consensus       233 ~d~vld~~g~  242 (296)
                      +|++|++.|.
T Consensus       122 id~li~~Ag~  131 (285)
T 2c07_A          122 VDILVNNAGI  131 (285)
T ss_dssp             CCEEEECCCC
T ss_pred             CCEEEECCCC
Confidence            9999999884

>3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE beta, structural genomics, PSI-2; 1.90A {Pseudomonas syringae PV} SCOP: c.2.1.0

Probab=96.81  E-value=0.0032  Score=53.30  Aligned_cols=81  Identities=16%  Similarity=0.149  Sum_probs=52.7

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHh----cC-Cc-EEE--Ec--CCchhHHHHHHHHhC-
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQ----KG-AW-AAL--TF--TNEKSLVNKVLEVSG-  229 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~----~g-~~-~~~--~~--~~~~~~~~~i~~~~~-  229 (296)
                      ++++++|+|++|++|.+.++.+ ...|++|+++++++++.+.+.+    .+ .. ..+  +.  .+..+..+.+.+... 
T Consensus        13 ~~k~vlITGas~gIG~~ia~~l-~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~d~d~~~~~~~~~~~~~~~~~   91 (247)
T 3i1j_A           13 KGRVILVTGAARGIGAAAARAY-AAHGASVVLLGRTEASLAEVSDQIKSAGQPQPLIIALNLENATAQQYRELAARVEHE   91 (247)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHH-HHTTCEEEEEESCHHHHHHHHHHHHHTTSCCCEEEECCTTTCCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCChHHHHHHHHH-HHCCCEEEEEecCHHHHHHHHHHHHhcCCCCceEEEeccccCCHHHHHHHHHHHHHh
Confidence            5789999999999999987777 4579999999999887665432    33 11 222  22  221222222222211 


Q ss_pred             CCcccEEEECCCC
Q psy1959         230 GKYANVVFEAVGG  242 (296)
Q Consensus       230 ~~g~d~vld~~g~  242 (296)
                      ...+|+++++.|.
T Consensus        92 ~g~id~lv~nAg~  104 (247)
T 3i1j_A           92 FGRLDGLLHNASI  104 (247)
T ss_dssp             HSCCSEEEECCCC
T ss_pred             CCCCCEEEECCcc
Confidence            1269999999884

>3ek2_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, oxidoreductase, structural genomics; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.2

Probab=96.81  E-value=0.0056  Score=52.47  Aligned_cols=83  Identities=10%  Similarity=0.057  Sum_probs=53.7

Q ss_pred             CCCCcEEEEEcCC--CcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHh----cCCcEE--EEcCCchhHHHHHHHHhC-
Q psy1959         159 LKEKQTVLVTAAG--GGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQ----KGAWAA--LTFTNEKSLVNKVLEVSG-  229 (296)
Q Consensus       159 ~~~g~~vlI~Ga~--g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~----~g~~~~--~~~~~~~~~~~~i~~~~~-  229 (296)
                      ..++++++|+|++  +++|.+.++.+ ...|++|++++++++..+.+++    .+....  .+..+..+..+.+.+... 
T Consensus        11 ~~~~k~vlITGa~~~~giG~~ia~~l-~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~   89 (271)
T 3ek2_A           11 FLDGKRILLTGLLSNRSIAYGIAKAC-KREGAELAFTYVGDRFKDRITEFAAEFGSELVFPCDVADDAQIDALFASLKTH   89 (271)
T ss_dssp             TTTTCEEEECCCCSTTSHHHHHHHHH-HHTTCEEEEEESSGGGHHHHHHHHHHTTCCCEEECCTTCHHHHHHHHHHHHHH
T ss_pred             ccCCCEEEEeCCCCCCcHHHHHHHHH-HHcCCCEEEEecchhhHHHHHHHHHHcCCcEEEECCCCCHHHHHHHHHHHHHH
Confidence            4578999999998  99999987777 4479999999988654444432    332222  233442333333333321 


Q ss_pred             CCcccEEEECCCC
Q psy1959         230 GKYANVVFEAVGG  242 (296)
Q Consensus       230 ~~g~d~vld~~g~  242 (296)
                      ...+|+++++.|.
T Consensus        90 ~g~id~lv~nAg~  102 (271)
T 3ek2_A           90 WDSLDGLVHSIGF  102 (271)
T ss_dssp             CSCEEEEEECCCC
T ss_pred             cCCCCEEEECCcc
Confidence            2379999999984

>3tl3_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 1.85A {Mycobacterium ulcerans}

Probab=96.81  E-value=0.0017  Score=55.60  Aligned_cols=79  Identities=19%  Similarity=0.206  Sum_probs=49.5

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCcEE---EEcCCchhHHHHHHHHhCCCcccEEE
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAA---LTFTNEKSLVNKVLEVSGGKYANVVF  237 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~~~---~~~~~~~~~~~~i~~~~~~~g~d~vl  237 (296)
                      .+++++|+|+++++|.+.++.+ ...|++|+++++..++  ..++++....   .+..+..+..+.+........+|+++
T Consensus         8 ~~k~vlVTGas~gIG~aia~~l-~~~G~~V~~~~r~~~~--~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~g~id~lv   84 (257)
T 3tl3_A            8 RDAVAVVTGGASGLGLATTKRL-LDAGAQVVVLDIRGED--VVADLGDRARFAAADVTDEAAVASALDLAETMGTLRIVV   84 (257)
T ss_dssp             --CEEEEETTTSHHHHHHHHHH-HHHTCEEEEEESSCHH--HHHHTCTTEEEEECCTTCHHHHHHHHHHHHHHSCEEEEE
T ss_pred             cCCEEEEeCCCCHHHHHHHHHH-HHCCCEEEEEeCchHH--HHHhcCCceEEEECCCCCHHHHHHHHHHHHHhCCCCEEE
Confidence            4689999999999999977766 3469999999985443  3344444332   23333233333332222123799999


Q ss_pred             ECCCC
Q psy1959         238 EAVGG  242 (296)
Q Consensus       238 d~~g~  242 (296)
                      ++.|.
T Consensus        85 ~nAg~   89 (257)
T 3tl3_A           85 NCAGT   89 (257)
T ss_dssp             ECGGG
T ss_pred             ECCCC
Confidence            99984

>3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase, NAD, one-carbon metabolism, phosphoprotein; HET: NAD; 2.25A {Homo sapiens} PDB: 3mtg_A*

Probab=96.81  E-value=0.0092  Score=55.07  Aligned_cols=95  Identities=15%  Similarity=0.075  Sum_probs=68.5

Q ss_pred             HHHHHHHHcC-CCCCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCcEEEEcCCchhHHHHHHHH
Q psy1959         149 AQIVFSRHAK-LKEKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNKVLEV  227 (296)
Q Consensus       149 a~~~l~~~~~-~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~  227 (296)
                      .+.++.+..+ .-.|++++|.|. |.+|..+++.+ +.+|++|++.++++.+...+...|...       .++.    ++
T Consensus       206 ~~~gi~rat~~~L~GktV~ViG~-G~IGk~vA~~L-ra~Ga~Viv~D~dp~ra~~A~~~G~~v-------~~Le----ea  272 (435)
T 3gvp_A          206 ILDGLKRTTDMMFGGKQVVVCGY-GEVGKGCCAAL-KAMGSIVYVTEIDPICALQACMDGFRL-------VKLN----EV  272 (435)
T ss_dssp             HHHHHHHHHCCCCTTCEEEEECC-SHHHHHHHHHH-HHTTCEEEEECSCHHHHHHHHHTTCEE-------CCHH----HH
T ss_pred             HHHHHHHhhCceecCCEEEEEee-CHHHHHHHHHH-HHCCCEEEEEeCChhhhHHHHHcCCEe-------ccHH----HH
Confidence            3444444333 458999999997 99999999999 678999999998887766666667531       1222    22


Q ss_pred             hCCCcccEEEECCCC-ccHH-HHHHHhhccCceE
Q psy1959         228 SGGKYANVVFEAVGG-EDKT-DLIRQKGAWAALT  259 (296)
Q Consensus       228 ~~~~g~d~vld~~g~-~~~~-~~~~~lg~~~g~~  259 (296)
                      .  ...|+++.|.|. ..+. ..++.| ++++.+
T Consensus       273 l--~~ADIVi~atgt~~lI~~e~l~~M-K~gail  303 (435)
T 3gvp_A          273 I--RQVDIVITCTGNKNVVTREHLDRM-KNSCIV  303 (435)
T ss_dssp             T--TTCSEEEECSSCSCSBCHHHHHHS-CTTEEE
T ss_pred             H--hcCCEEEECCCCcccCCHHHHHhc-CCCcEE
Confidence            2  268999999887 4454 788888 666655

>1zmt_A Haloalcohol dehalogenase HHEC; halohydrin dehalogenase, epoxide catalysis, enantioselectivity, lyase; HET: RNO; 1.70A {Agrobacterium tumefaciens} SCOP: c.2.1.2 PDB: 1pwz_A 1px0_A* 1pwx_A* 1zo8_A*

Probab=96.81  E-value=0.0026  Score=54.36  Aligned_cols=77  Identities=13%  Similarity=-0.035  Sum_probs=51.4

Q ss_pred             cEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHh---cCCcEE-EEcCCchhHHHHHHHHhCCCcccEEEE
Q psy1959         163 QTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQ---KGAWAA-LTFTNEKSLVNKVLEVSGGKYANVVFE  238 (296)
Q Consensus       163 ~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~---~g~~~~-~~~~~~~~~~~~i~~~~~~~g~d~vld  238 (296)
                      ++++|+|++|++|.++++.+ ...|++|+++++++++.+.+.+   .+.... ++......+.+.+.+..  .++|++++
T Consensus         2 k~vlVTGas~gIG~~ia~~l-~~~G~~V~~~~r~~~~~~~~~~l~~~~~~~~~~d~~~v~~~~~~~~~~~--g~iD~lv~   78 (254)
T 1zmt_A            2 STAIVTNVKHFGGMGSALRL-SEAGHTVACHDESFKQKDELEAFAETYPQLKPMSEQEPAELIEAVTSAY--GQVDVLVS   78 (254)
T ss_dssp             CEEEESSTTSTTHHHHHHHH-HHTTCEEEECCGGGGSHHHHHHHHHHCTTSEECCCCSHHHHHHHHHHHH--SCCCEEEE
T ss_pred             eEEEEeCCCchHHHHHHHHH-HHCCCEEEEEeCCHHHHHHHHHHHhcCCcEEEECHHHHHHHHHHHHHHh--CCCCEEEE
Confidence            47899999999999988877 4579999999998877655432   243222 22222223333343333  27999999


Q ss_pred             CCCC
Q psy1959         239 AVGG  242 (296)
Q Consensus       239 ~~g~  242 (296)
                      +.|.
T Consensus        79 nAg~   82 (254)
T 1zmt_A           79 NDIF   82 (254)
T ss_dssp             ECCC
T ss_pred             CCCc
Confidence            9874

>3o26_A Salutaridine reductase; short chain dehydrogenase/reductases, oxidoreductase; HET: NDP; 1.91A {Papaver somniferum} SCOP: c.2.1.0

Probab=96.80  E-value=0.0023  Score=55.97  Aligned_cols=79  Identities=13%  Similarity=0.197  Sum_probs=52.0

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHH----HhcCC-cEE---EEcCCc-hhHH---HHHHHHh
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLI----RQKGA-WAA---LTFTNE-KSLV---NKVLEVS  228 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~----~~~g~-~~~---~~~~~~-~~~~---~~i~~~~  228 (296)
                      .+++++|+|+++++|.++++.+ ...|++|+++++++++.+.+    ++.+. ...   .+..+. ....   +.+.+..
T Consensus        11 ~~k~vlITGas~GIG~~~a~~L-~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~~v~~~~~~~~~~~   89 (311)
T 3o26_A           11 KRRCAVVTGGNKGIGFEICKQL-SSNGIMVVLTCRDVTKGHEAVEKLKNSNHENVVFHQLDVTDPIATMSSLADFIKTHF   89 (311)
T ss_dssp             -CCEEEESSCSSHHHHHHHHHH-HHTTCEEEEEESCHHHHHHHHHHHHTTTCCSEEEEECCTTSCHHHHHHHHHHHHHHH
T ss_pred             CCcEEEEecCCchHHHHHHHHH-HHCCCEEEEEeCCHHHHHHHHHHHHhcCCCceEEEEccCCCcHHHHHHHHHHHHHhC
Confidence            5789999999999999988777 44799999999998875543    22232 222   233332 2222   2222222


Q ss_pred             CCCcccEEEECCCC
Q psy1959         229 GGKYANVVFEAVGG  242 (296)
Q Consensus       229 ~~~g~d~vld~~g~  242 (296)
                        ..+|+++++.|.
T Consensus        90 --g~iD~lv~nAg~  101 (311)
T 3o26_A           90 --GKLDILVNNAGV  101 (311)
T ss_dssp             --SSCCEEEECCCC
T ss_pred             --CCCCEEEECCcc
Confidence              279999999995

>3afn_B Carbonyl reductase; alpha/beta/alpha, rossmann-fold, oxidoreductase; HET: NAP; 1.63A {Sphingomonas SP} PDB: 3afm_A*

Probab=96.79  E-value=0.0034  Score=53.32  Aligned_cols=81  Identities=23%  Similarity=0.200  Sum_probs=52.3

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCC-cchHHHHH----hcCCcEE---EEcCCchhHHHHHHHHhC-CC
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNS-EDKTDLIR----QKGAWAA---LTFTNEKSLVNKVLEVSG-GK  231 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~-~~~~~~~~----~~g~~~~---~~~~~~~~~~~~i~~~~~-~~  231 (296)
                      .+++++|+|++|++|.++++.+ ...|++|++++++ +++.+.+.    +.+....   .+..+..+..+.+.+... -.
T Consensus         6 ~~k~vlVTGasggiG~~~a~~l-~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g   84 (258)
T 3afn_B            6 KGKRVLITGSSQGIGLATARLF-ARAGAKVGLHGRKAPANIDETIASMRADGGDAAFFAADLATSEACQQLVDEFVAKFG   84 (258)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHH-HHTTCEEEEEESSCCTTHHHHHHHHHHTTCEEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEeCCCChHHHHHHHHH-HHCCCEEEEECCCchhhHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHHcC
Confidence            4689999999999999988877 4479999999998 66655432    2243222   233332333333332211 12


Q ss_pred             cccEEEECCCC
Q psy1959         232 YANVVFEAVGG  242 (296)
Q Consensus       232 g~d~vld~~g~  242 (296)
                      ++|++|++.|.
T Consensus        85 ~id~vi~~Ag~   95 (258)
T 3afn_B           85 GIDVLINNAGG   95 (258)
T ss_dssp             SCSEEEECCCC
T ss_pred             CCCEEEECCCC
Confidence            69999999884

>4fc7_A Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossmann fold, peroxisomal beta-oxidation, oxidoreductas; HET: NAP COA; 1.84A {Homo sapiens} PDB: 4fc6_A*

Probab=96.79  E-value=0.0039  Score=54.09  Aligned_cols=80  Identities=9%  Similarity=0.148  Sum_probs=53.1

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHH-h----cCCcEE---EEcCCchhHHHHHHHHhC-CC
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIR-Q----KGAWAA---LTFTNEKSLVNKVLEVSG-GK  231 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~-~----~g~~~~---~~~~~~~~~~~~i~~~~~-~~  231 (296)
                      .|++++|+|+++++|.++++.+ ...|++|+++++++++.+.+. +    .+....   .+..+..+..+.+.+... -.
T Consensus        26 ~~k~~lVTGas~GIG~aia~~l-~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g  104 (277)
T 4fc7_A           26 RDKVAFITGGGSGIGFRIAEIF-MRHGCHTVIASRSLPRVLTAARKLAGATGRRCLPLSMDVRAPPAVMAAVDQALKEFG  104 (277)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHH-HTTTCEEEEEESCHHHHHHHHHHHHHHHSSCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEeCCCchHHHHHHHHH-HHCCCEEEEEeCCHHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence            5789999999999999988877 457999999999887654432 1    243332   233332333333333211 12


Q ss_pred             cccEEEECCC
Q psy1959         232 YANVVFEAVG  241 (296)
Q Consensus       232 g~d~vld~~g  241 (296)
                      .+|+++++.|
T Consensus       105 ~id~lv~nAg  114 (277)
T 4fc7_A          105 RIDILINCAA  114 (277)
T ss_dssp             CCCEEEECCC
T ss_pred             CCCEEEECCc
Confidence            7999999998

>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13

Probab=96.79  E-value=0.01  Score=51.30  Aligned_cols=98  Identities=15%  Similarity=0.128  Sum_probs=67.5

Q ss_pred             HHcCCCCCcEEEEEcCCCcHHHHHHHHHHHhC-CCEEEEEeCCcchHHHHHhc----CC--cEEEEcCCchhHHHHHHHH
Q psy1959         155 RHAKLKEKQTVLVTAAGGGLGLAAVDMATKIY-KAKVIGVCNSEDKTDLIRQK----GA--WAALTFTNEKSLVNKVLEV  227 (296)
Q Consensus       155 ~~~~~~~g~~vlI~Ga~g~vG~aa~~la~~~~-g~~Vi~~~~~~~~~~~~~~~----g~--~~~~~~~~~~~~~~~i~~~  227 (296)
                      ....++++++||-.|+ |. |..+..+++... +.+|+.++.+++..+.+++.    +.  ...+...+   +.+.    
T Consensus       106 ~~~~~~~~~~VLDiG~-G~-G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d---~~~~----  176 (277)
T 1o54_A          106 MMLDVKEGDRIIDTGV-GS-GAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRD---ISEG----  176 (277)
T ss_dssp             HHTTCCTTCEEEEECC-TT-SHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCC---GGGC----
T ss_pred             HHhCCCCCCEEEEECC-cC-CHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECC---HHHc----
Confidence            5678899999999996 55 888888884323 57999999999888777653    43  22222222   1111    


Q ss_pred             hCCCcccEEEECCCC--ccHHHHHHHhhccCceEEee
Q psy1959         228 SGGKYANVVFEAVGG--EDKTDLIRQKGAWAALTFTN  262 (296)
Q Consensus       228 ~~~~g~d~vld~~g~--~~~~~~~~~lg~~~g~~~~~  262 (296)
                      .....+|+++.....  ..+..+.+.| +++|.+.+.
T Consensus       177 ~~~~~~D~V~~~~~~~~~~l~~~~~~L-~pgG~l~~~  212 (277)
T 1o54_A          177 FDEKDVDALFLDVPDPWNYIDKCWEAL-KGGGRFATV  212 (277)
T ss_dssp             CSCCSEEEEEECCSCGGGTHHHHHHHE-EEEEEEEEE
T ss_pred             ccCCccCEEEECCcCHHHHHHHHHHHc-CCCCEEEEE
Confidence            223479999987765  4788888999 888877543

>1xhl_A Short-chain dehydrogenase/reductase family member putative tropinone reductase-II...; parallel beta-sheet of seven strands in the order 3214567; HET: NDP TNE; 2.40A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=96.79  E-value=0.002  Score=56.58  Aligned_cols=81  Identities=15%  Similarity=0.181  Sum_probs=53.0

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHH----hcCC---cEE---EEcCCchhHHHHHHHHhC-
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIR----QKGA---WAA---LTFTNEKSLVNKVLEVSG-  229 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~----~~g~---~~~---~~~~~~~~~~~~i~~~~~-  229 (296)
                      .+++++|+|++|++|.++++.+ ...|++|+++++++++.+.+.    +.+.   ...   .+..+..+..+.+.+... 
T Consensus        25 ~~k~vlVTGas~gIG~aia~~L-~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~  103 (297)
T 1xhl_A           25 SGKSVIITGSSNGIGRSAAVIF-AKEGAQVTITGRNEDRLEETKQQILKAGVPAEKINAVVADVTEASGQDDIINTTLAK  103 (297)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHH-HHTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHH-HHCCCEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEecCCCCHHHHHHHHHHHHHh
Confidence            5789999999999999988777 447999999999887765443    2232   222   233332333333332211 


Q ss_pred             CCcccEEEECCCC
Q psy1959         230 GKYANVVFEAVGG  242 (296)
Q Consensus       230 ~~g~d~vld~~g~  242 (296)
                      -.++|+++++.|.
T Consensus       104 ~g~iD~lvnnAG~  116 (297)
T 1xhl_A          104 FGKIDILVNNAGA  116 (297)
T ss_dssp             HSCCCEEEECCCC
T ss_pred             cCCCCEEEECCCc
Confidence            1269999999884

>2bgk_A Rhizome secoisolariciresinol dehydrogenase; oxidoreductase; 1.6A {Podophyllum peltatum} SCOP: c.2.1.2 PDB: 2bgl_A* 2bgm_A*

Probab=96.78  E-value=0.0029  Score=54.52  Aligned_cols=81  Identities=20%  Similarity=0.289  Sum_probs=52.4

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHH-hcCC--c-EE--EEcCCchhHHHHHHHHhC-CCcc
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIR-QKGA--W-AA--LTFTNEKSLVNKVLEVSG-GKYA  233 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~-~~g~--~-~~--~~~~~~~~~~~~i~~~~~-~~g~  233 (296)
                      .+++++|+|++|++|.++++.+ ...|++|+++++++++.+.+. +++.  . ..  .+..+..++.+.+.+... ..++
T Consensus        15 ~~k~vlITGasggiG~~~a~~l-~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i   93 (278)
T 2bgk_A           15 QDKVAIITGGAGGIGETTAKLF-VRYGAKVVIADIADDHGQKVCNNIGSPDVISFVHCDVTKDEDVRNLVDTTIAKHGKL   93 (278)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHH-HHTTCEEEEEESCHHHHHHHHHHHCCTTTEEEEECCTTCHHHHHHHHHHHHHHHSCC
T ss_pred             cCCEEEEECCCCHHHHHHHHHH-HHCCCEEEEEcCChhHHHHHHHHhCCCCceEEEECCCCCHHHHHHHHHHHHHHcCCC
Confidence            5789999999999999988777 447999999999877655443 3321  1 22  233332333333332211 1269


Q ss_pred             cEEEECCCC
Q psy1959         234 NVVFEAVGG  242 (296)
Q Consensus       234 d~vld~~g~  242 (296)
                      |+++++.|.
T Consensus        94 d~li~~Ag~  102 (278)
T 2bgk_A           94 DIMFGNVGV  102 (278)
T ss_dssp             CEEEECCCC
T ss_pred             CEEEECCcc
Confidence            999999884

>3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0

Probab=96.78  E-value=0.0045  Score=53.63  Aligned_cols=81  Identities=16%  Similarity=0.115  Sum_probs=51.6

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCC------------cchHHHH----HhcCCcEE---EEcCCchhHH
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNS------------EDKTDLI----RQKGAWAA---LTFTNEKSLV  221 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~------------~~~~~~~----~~~g~~~~---~~~~~~~~~~  221 (296)
                      .|++++|+|+++++|.++++.+ ...|++|++++++            .++.+.+    +..+....   .+..+..+..
T Consensus         9 ~gk~vlVTGas~gIG~~ia~~l-~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~   87 (287)
T 3pxx_A            9 QDKVVLVTGGARGQGRSHAVKL-AEEGADIILFDICHDIETNEYPLATSRDLEEAGLEVEKTGRKAYTAEVDVRDRAAVS   87 (287)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHH-HHTTCEEEEEECCSCCTTSCSCCCCHHHHHHHHHHHHHTTSCEEEEECCTTCHHHHH
T ss_pred             CCCEEEEeCCCChHHHHHHHHH-HHCCCeEEEEcccccccccccchhhhHHHHHHHHHHHhcCCceEEEEccCCCHHHHH
Confidence            5789999999999999987777 4579999999876            3333332    33344332   2333323333


Q ss_pred             HHHHHHhC-CCcccEEEECCCC
Q psy1959         222 NKVLEVSG-GKYANVVFEAVGG  242 (296)
Q Consensus       222 ~~i~~~~~-~~g~d~vld~~g~  242 (296)
                      +.+.+... ...+|+++++.|.
T Consensus        88 ~~~~~~~~~~g~id~lv~nAg~  109 (287)
T 3pxx_A           88 RELANAVAEFGKLDVVVANAGI  109 (287)
T ss_dssp             HHHHHHHHHHSCCCEEEECCCC
T ss_pred             HHHHHHHHHcCCCCEEEECCCc
Confidence            33333211 1269999999985

>1fmc_A 7 alpha-hydroxysteroid dehydrogenase; short-chain dehydrogenase/reductase, bIle acid catabolism, oxidoreductase; HET: CHO NAD; 1.80A {Escherichia coli} SCOP: c.2.1.2 PDB: 1ahi_A* 1ahh_A*

Probab=96.77  E-value=0.0034  Score=53.30  Aligned_cols=81  Identities=20%  Similarity=0.198  Sum_probs=52.9

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHH----hcCCcEE---EEcCCchhHHHHHHHHhC-CCc
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIR----QKGAWAA---LTFTNEKSLVNKVLEVSG-GKY  232 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~----~~g~~~~---~~~~~~~~~~~~i~~~~~-~~g  232 (296)
                      .+++++|+|++|++|.++++.+ ...|++|+++++++++.+.+.    +.+....   .+..+..++.+.+.+... ..+
T Consensus        10 ~~~~vlVtGasggiG~~la~~l-~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   88 (255)
T 1fmc_A           10 DGKCAIITGAGAGIGKEIAITF-ATAGASVVVSDINADAANHVVDEIQQLGGQAFACRCDITSEQELSALADFAISKLGK   88 (255)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHH-HTTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHSS
T ss_pred             CCCEEEEECCccHHHHHHHHHH-HHCCCEEEEEcCCHHHHHHHHHHHHHhCCceEEEEcCCCCHHHHHHHHHHHHHhcCC
Confidence            5789999999999999988877 457999999999887655432    2343322   223332233333332211 126


Q ss_pred             ccEEEECCCC
Q psy1959         233 ANVVFEAVGG  242 (296)
Q Consensus       233 ~d~vld~~g~  242 (296)
                      +|+++.+.|.
T Consensus        89 ~d~vi~~Ag~   98 (255)
T 1fmc_A           89 VDILVNNAGG   98 (255)
T ss_dssp             CCEEEECCCC
T ss_pred             CCEEEECCCC
Confidence            9999999884

>3oid_A Enoyl-[acyl-carrier-protein] reductase [NADPH]; fatty acid synthesis, enoyl-ACP reductases, FABL, rossmann-L NADPH binding, oxidoreductase; HET: TCL NDP; 1.80A {Bacillus subtilis} PDB: 3oic_A*

Probab=96.77  E-value=0.0034  Score=53.90  Aligned_cols=81  Identities=12%  Similarity=0.082  Sum_probs=52.2

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEE-eCCcchHHHHH----hcCCcEEE---EcCCchhHHHHHHHHhC-CC
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGV-CNSEDKTDLIR----QKGAWAAL---TFTNEKSLVNKVLEVSG-GK  231 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~-~~~~~~~~~~~----~~g~~~~~---~~~~~~~~~~~i~~~~~-~~  231 (296)
                      ++++++|+|++|++|.++++.+ ...|++|+++ ++++++.+.+.    +.+.....   +..+..+..+.+.+... ..
T Consensus         3 ~~k~vlVTGas~gIG~aia~~l-~~~G~~vv~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g   81 (258)
T 3oid_A            3 QNKCALVTGSSRGVGKAAAIRL-AENGYNIVINYARSKKAALETAEEIEKLGVKVLVVKANVGQPAKIKEMFQQIDETFG   81 (258)
T ss_dssp             CCCEEEESSCSSHHHHHHHHHH-HHTTCEEEEEESSCHHHHHHHHHHHHTTTCCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEecCCchHHHHHHHHH-HHCCCEEEEEcCCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence            5789999999999999988777 4579999987 77776655443    33443322   33332333333333211 12


Q ss_pred             cccEEEECCCC
Q psy1959         232 YANVVFEAVGG  242 (296)
Q Consensus       232 g~d~vld~~g~  242 (296)
                      .+|+++++.|.
T Consensus        82 ~id~lv~nAg~   92 (258)
T 3oid_A           82 RLDVFVNNAAS   92 (258)
T ss_dssp             CCCEEEECCCC
T ss_pred             CCCEEEECCCC
Confidence            68999999973

>3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A*

Probab=96.76  E-value=0.0049  Score=53.92  Aligned_cols=81  Identities=19%  Similarity=0.211  Sum_probs=51.7

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcch-HHH----HHhcCCcEEE---EcCCchhHHHHHHHHhC-CC
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDK-TDL----IRQKGAWAAL---TFTNEKSLVNKVLEVSG-GK  231 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~-~~~----~~~~g~~~~~---~~~~~~~~~~~i~~~~~-~~  231 (296)
                      .|++++|+|++|++|.++++.+ ...|++|+++++++++ .+.    +++.+....+   +..+..+..+.+.+... -.
T Consensus        46 ~gk~vlVTGas~GIG~aia~~l-a~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g  124 (291)
T 3ijr_A           46 KGKNVLITGGDSGIGRAVSIAF-AKEGANIAIAYLDEEGDANETKQYVEKEGVKCVLLPGDLSDEQHCKDIVQETVRQLG  124 (291)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHH-HHTTCEEEEEESSCHHHHHHHHHHHHTTTCCEEEEESCTTSHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEeCCCcHHHHHHHHHH-HHCCCEEEEEeCCchHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence            5789999999999999988777 4579999999987653 222    2334544332   33332333333332211 12


Q ss_pred             cccEEEECCCC
Q psy1959         232 YANVVFEAVGG  242 (296)
Q Consensus       232 g~d~vld~~g~  242 (296)
                      .+|+++++.|.
T Consensus       125 ~iD~lvnnAg~  135 (291)
T 3ijr_A          125 SLNILVNNVAQ  135 (291)
T ss_dssp             SCCEEEECCCC
T ss_pred             CCCEEEECCCC
Confidence            69999999874

>1spx_A Short-chain reductase family member (5L265); parallel beta-sheet of seven strands in the order 3214567; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=96.76  E-value=0.0019  Score=55.95  Aligned_cols=81  Identities=15%  Similarity=0.149  Sum_probs=52.2

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHh-c------CCcEE---EEcCCchhHHHHHHHHhC-
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQ-K------GAWAA---LTFTNEKSLVNKVLEVSG-  229 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~-~------g~~~~---~~~~~~~~~~~~i~~~~~-  229 (296)
                      .+++++|+|++|++|.++++.+ ...|++|+++++++++.+.+.+ +      +....   .+..+..+..+.+.+... 
T Consensus         5 ~~k~vlVTGas~gIG~~ia~~l-~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~   83 (278)
T 1spx_A            5 AEKVAIITGSSNGIGRATAVLF-AREGAKVTITGRHAERLEETRQQILAAGVSEQNVNSVVADVTTDAGQDEILSTTLGK   83 (278)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHH-HHTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCchHHHHHHHHH-HHCCCEEEEEeCCHHHHHHHHHHHHhcccCCCceeEEecccCCHHHHHHHHHHHHHH
Confidence            4689999999999999988777 4479999999998877665432 2      11221   233332333333332211 


Q ss_pred             CCcccEEEECCCC
Q psy1959         230 GKYANVVFEAVGG  242 (296)
Q Consensus       230 ~~g~d~vld~~g~  242 (296)
                      -.++|+++++.|.
T Consensus        84 ~g~id~lv~~Ag~   96 (278)
T 1spx_A           84 FGKLDILVNNAGA   96 (278)
T ss_dssp             HSCCCEEEECCC-
T ss_pred             cCCCCEEEECCCC
Confidence            1269999999984

>1mxh_A Pteridine reductase 2; SDR topology, protein-substrate complex, oxidoreductase; HET: NAP DHF; 2.20A {Trypanosoma cruzi} SCOP: c.2.1.2 PDB: 1mxf_A*

Probab=96.75  E-value=0.0024  Score=55.16  Aligned_cols=81  Identities=10%  Similarity=-0.008  Sum_probs=51.8

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeC-CcchHHHHHh-c----CCcEE---EEcCCc----hhHHHHHHHH
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCN-SEDKTDLIRQ-K----GAWAA---LTFTNE----KSLVNKVLEV  227 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~-~~~~~~~~~~-~----g~~~~---~~~~~~----~~~~~~i~~~  227 (296)
                      .+++++|+|++|++|.++++.+ ...|++|+++++ ++++.+.+.+ +    +....   .+..+.    .+..+.+.+.
T Consensus        10 ~~k~~lVTGas~gIG~~ia~~l-~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~   88 (276)
T 1mxh_A           10 ECPAAVITGGARRIGHSIAVRL-HQQGFRVVVHYRHSEGAAQRLVAELNAARAGSAVLCKGDLSLSSSLLDCCEDIIDCS   88 (276)
T ss_dssp             -CCEEEETTCSSHHHHHHHHHH-HHTTCEEEEEESSCHHHHHHHHHHHHHHSTTCEEEEECCCSSSTTHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHH-HHCCCEEEEEeCCChHHHHHHHHHHHHhcCCceEEEeccCCCccccHHHHHHHHHHH
Confidence            4689999999999999988777 447999999998 7776654432 1    43322   233332    2233333222


Q ss_pred             hC-CCcccEEEECCCC
Q psy1959         228 SG-GKYANVVFEAVGG  242 (296)
Q Consensus       228 ~~-~~g~d~vld~~g~  242 (296)
                      .. ..++|+++++.|.
T Consensus        89 ~~~~g~id~lv~nAg~  104 (276)
T 1mxh_A           89 FRAFGRCDVLVNNASA  104 (276)
T ss_dssp             HHHHSCCCEEEECCCC
T ss_pred             HHhcCCCCEEEECCCC
Confidence            11 1269999999984

>4ibo_A Gluconate dehydrogenase; enzyme function initiative structural genomics, oxidoreductase; 2.10A {Agrobacterium fabrum}

Probab=96.75  E-value=0.0024  Score=55.28  Aligned_cols=81  Identities=19%  Similarity=0.232  Sum_probs=54.3

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHH----hcCCcEEE---EcCCchhHHHHHHHHhC-CCc
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIR----QKGAWAAL---TFTNEKSLVNKVLEVSG-GKY  232 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~----~~g~~~~~---~~~~~~~~~~~i~~~~~-~~g  232 (296)
                      .|++++|+|+++++|.++++.+ ...|++|+++++++++.+.+.    +.+.....   +..+..+..+.+.+... ..+
T Consensus        25 ~gk~~lVTGas~gIG~aia~~l-a~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~  103 (271)
T 4ibo_A           25 GGRTALVTGSSRGLGRAMAEGL-AVAGARILINGTDPSRVAQTVQEFRNVGHDAEAVAFDVTSESEIIEAFARLDEQGID  103 (271)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHH-HHTTCEEEECCSCHHHHHHHHHHHHHTTCCEEECCCCTTCHHHHHHHHHHHHHHTCC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHH-HHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHCCC
Confidence            5789999999999999988777 457999999999888765443    33443332   33332333333333221 236


Q ss_pred             ccEEEECCCC
Q psy1959         233 ANVVFEAVGG  242 (296)
Q Consensus       233 ~d~vld~~g~  242 (296)
                      +|+++++.|.
T Consensus       104 iD~lv~nAg~  113 (271)
T 4ibo_A          104 VDILVNNAGI  113 (271)
T ss_dssp             CCEEEECCCC
T ss_pred             CCEEEECCCC
Confidence            9999999984

>3sx2_A Putative 3-ketoacyl-(acyl-carrier-protein) reduct; ssgcid, 3-ketoacyl-(acyl-carrier-protein) reductase, mycobac paratuberculosis; HET: NAD; 1.50A {Mycobacterium avium subsp}

Probab=96.75  E-value=0.0044  Score=53.56  Aligned_cols=81  Identities=16%  Similarity=0.114  Sum_probs=51.6

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCC------------cchHHHH----HhcCCcEEE---EcCCchhHH
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNS------------EDKTDLI----RQKGAWAAL---TFTNEKSLV  221 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~------------~~~~~~~----~~~g~~~~~---~~~~~~~~~  221 (296)
                      .|++++|+|+++++|.++++.+ ...|++|++++++            +++.+.+    ++.+.....   +..+..+..
T Consensus        12 ~gk~vlVTGas~gIG~~ia~~l-~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~   90 (278)
T 3sx2_A           12 TGKVAFITGAARGQGRAHAVRL-AADGADIIAVDLCDQIASVPYPLATPEELAATVKLVEDIGSRIVARQADVRDRESLS   90 (278)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHH-HHTTCEEEEEECCSCCTTCSSCCCCHHHHHHHHHHHHHHTCCEEEEECCTTCHHHHH
T ss_pred             CCCEEEEECCCChHHHHHHHHH-HHCCCeEEEEecccccccccccccchHHHHHHHHHHHhcCCeEEEEeCCCCCHHHHH
Confidence            5789999999999999987777 4579999999876            3333322    333443322   333323333


Q ss_pred             HHHHHHhC-CCcccEEEECCCC
Q psy1959         222 NKVLEVSG-GKYANVVFEAVGG  242 (296)
Q Consensus       222 ~~i~~~~~-~~g~d~vld~~g~  242 (296)
                      +.+.+... -..+|+++++.|.
T Consensus        91 ~~~~~~~~~~g~id~lv~nAg~  112 (278)
T 3sx2_A           91 AALQAGLDELGRLDIVVANAGI  112 (278)
T ss_dssp             HHHHHHHHHHCCCCEEEECCCC
T ss_pred             HHHHHHHHHcCCCCEEEECCCC
Confidence            33332211 1269999999984

>2gdz_A NAD+-dependent 15-hydroxyprostaglandin dehydrogen; dehydrogenase, structural genomics, SH dehydrogenase/reductase, inflammation; HET: NAD; 1.65A {Homo sapiens} SCOP: c.2.1.2

Probab=96.75  E-value=0.0045  Score=53.16  Aligned_cols=81  Identities=17%  Similarity=0.110  Sum_probs=52.4

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHH-hc-----CCcE-E--EEcCCchhHHHHHHHHhC-C
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIR-QK-----GAWA-A--LTFTNEKSLVNKVLEVSG-G  230 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~-~~-----g~~~-~--~~~~~~~~~~~~i~~~~~-~  230 (296)
                      .+++++|+|++|++|.+.++.+ ...|++|+++++++++.+.+. ++     +... .  .+..+..++.+.+.+... -
T Consensus         6 ~~k~vlVTGas~gIG~~ia~~l-~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~   84 (267)
T 2gdz_A            6 NGKVALVTGAAQGIGRAFAEAL-LLKGAKVALVDWNLEAGVQCKAALHEQFEPQKTLFIQCDVADQQQLRDTFRKVVDHF   84 (267)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHH-HHTTCEEEEEESCHHHHHHHHHHHTTTSCGGGEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCcHHHHHHHHH-HHCCCEEEEEECCHHHHHHHHHHHHhhcCCCceEEEecCCCCHHHHHHHHHHHHHHc
Confidence            5789999999999999988877 457999999999877655432 22     1112 1  233332333333333211 1


Q ss_pred             CcccEEEECCCC
Q psy1959         231 KYANVVFEAVGG  242 (296)
Q Consensus       231 ~g~d~vld~~g~  242 (296)
                      ..+|+++++.|.
T Consensus        85 g~id~lv~~Ag~   96 (267)
T 2gdz_A           85 GRLDILVNNAGV   96 (267)
T ss_dssp             SCCCEEEECCCC
T ss_pred             CCCCEEEECCCC
Confidence            268999999984

>1gee_A Glucose 1-dehydrogenase; short-chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 1.60A {Bacillus megaterium} SCOP: c.2.1.2 PDB: 1rwb_A* 1gco_A* 1g6k_A* 3aus_A 3aut_A* 3auu_A*

Probab=96.73  E-value=0.0036  Score=53.44  Aligned_cols=81  Identities=25%  Similarity=0.263  Sum_probs=51.6

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeC-CcchHHHH----HhcCCcEE-E--EcCCchhHHHHHHHHhC-CC
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCN-SEDKTDLI----RQKGAWAA-L--TFTNEKSLVNKVLEVSG-GK  231 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~-~~~~~~~~----~~~g~~~~-~--~~~~~~~~~~~i~~~~~-~~  231 (296)
                      .+++++|+|++|++|.++++.+ ...|++|+++++ ++++.+.+    ++.+.... +  +..+..+..+.+.+... -.
T Consensus         6 ~~k~vlITGasggiG~~~a~~l-~~~G~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g   84 (261)
T 1gee_A            6 EGKVVVITGSSTGLGKSMAIRF-ATEKAKVVVNYRSKEDEANSVLEEIKKVGGEAIAVKGDVTVESDVINLVQSAIKEFG   84 (261)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHH-HHTTCEEEEEESSCHHHHHHHHHHHHHTTCEEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEeCCCChHHHHHHHHH-HHCCCEEEEEcCCChHHHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHHcC
Confidence            4689999999999999988777 447999999998 66655443    22343322 2  23332333333333211 12


Q ss_pred             cccEEEECCCC
Q psy1959         232 YANVVFEAVGG  242 (296)
Q Consensus       232 g~d~vld~~g~  242 (296)
                      ++|++|++.|.
T Consensus        85 ~id~li~~Ag~   95 (261)
T 1gee_A           85 KLDVMINNAGL   95 (261)
T ss_dssp             CCCEEEECCCC
T ss_pred             CCCEEEECCCC
Confidence            69999999883

>3uve_A Carveol dehydrogenase ((+)-trans-carveol dehydrog; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: NAD PG4; 1.55A {Mycobacterium avium} SCOP: c.2.1.0 PDB: 3uwr_A*

Probab=96.73  E-value=0.012  Score=51.08  Aligned_cols=81  Identities=15%  Similarity=0.079  Sum_probs=51.5

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCC----------------cchHHHH----HhcCCcEE---EEcCCc
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNS----------------EDKTDLI----RQKGAWAA---LTFTNE  217 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~----------------~~~~~~~----~~~g~~~~---~~~~~~  217 (296)
                      .|++++|+|+++++|.++++.+ ...|++|++++++                +++.+.+    ++.+....   .+..+.
T Consensus        10 ~~k~~lVTGas~gIG~aia~~l-a~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~   88 (286)
T 3uve_A           10 EGKVAFVTGAARGQGRSHAVRL-AQEGADIIAVDICKPIRAGVVDTAIPASTPEDLAETADLVKGHNRRIVTAEVDVRDY   88 (286)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHH-HHTTCEEEEEECCSCSBTTBCCCSSCCCCHHHHHHHHHHHHTTTCCEEEEECCTTCH
T ss_pred             CCCEEEEeCCCchHHHHHHHHH-HHCCCeEEEEeccccccccccccccccCCHHHHHHHHHHHhhcCCceEEEEcCCCCH
Confidence            5789999999999999977777 4579999999876                3444333    22343332   233332


Q ss_pred             hhHHHHHHHHhC-CCcccEEEECCCC
Q psy1959         218 KSLVNKVLEVSG-GKYANVVFEAVGG  242 (296)
Q Consensus       218 ~~~~~~i~~~~~-~~g~d~vld~~g~  242 (296)
                      .+..+.+.+... -..+|+++++.|.
T Consensus        89 ~~v~~~~~~~~~~~g~id~lv~nAg~  114 (286)
T 3uve_A           89 DALKAAVDSGVEQLGRLDIIVANAGI  114 (286)
T ss_dssp             HHHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred             HHHHHHHHHHHHHhCCCCEEEECCcc
Confidence            333333333211 1269999999984

>3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI, UW, decode, eonyl-(acyl-carrier-PR reductase, NAD, oxidoreductase; HET: NAD; 1.80A {Anaplasma phagocytophilum} PDB: 3k2e_A*

Probab=96.73  E-value=0.0053  Score=53.83  Aligned_cols=81  Identities=15%  Similarity=0.060  Sum_probs=52.6

Q ss_pred             CCcEEEEEcCCC--cHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHh----cCCcEEE--EcCCchhHHHHHHHHhC-CC
Q psy1959         161 EKQTVLVTAAGG--GLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQ----KGAWAAL--TFTNEKSLVNKVLEVSG-GK  231 (296)
Q Consensus       161 ~g~~vlI~Ga~g--~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~----~g~~~~~--~~~~~~~~~~~i~~~~~-~~  231 (296)
                      .+++++|+|++|  ++|.++++.+ ...|++|++++++++..+.+++    .+....+  +..+..+..+.+.+... -.
T Consensus        29 ~~k~vlVTGasg~~GIG~~ia~~l-a~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g  107 (296)
T 3k31_A           29 EGKKGVIIGVANDKSLAWGIAKAV-CAQGAEVALTYLSETFKKRVDPLAESLGVKLTVPCDVSDAESVDNMFKVLAEEWG  107 (296)
T ss_dssp             TTCEEEEECCCSTTSHHHHHHHHH-HHTTCEEEEEESSGGGHHHHHHHHHHHTCCEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEEeCCCCCCHHHHHHHHH-HHCCCEEEEEeCChHHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence            578999999986  9999877777 4579999999998765444432    3433332  33342333333333211 12


Q ss_pred             cccEEEECCCC
Q psy1959         232 YANVVFEAVGG  242 (296)
Q Consensus       232 g~d~vld~~g~  242 (296)
                      .+|+++++.|.
T Consensus       108 ~iD~lVnnAG~  118 (296)
T 3k31_A          108 SLDFVVHAVAF  118 (296)
T ss_dssp             CCSEEEECCCC
T ss_pred             CCCEEEECCCc
Confidence            69999999984

>1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33; 1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A* 3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A*

Probab=96.72  E-value=0.0032  Score=53.84  Aligned_cols=81  Identities=17%  Similarity=0.129  Sum_probs=52.5

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHh-CCCEEEEEeCCcchHHHH----HhcCCc-EE--EEcCCchhHHHHHHHHhC-CC
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKI-YKAKVIGVCNSEDKTDLI----RQKGAW-AA--LTFTNEKSLVNKVLEVSG-GK  231 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~-~g~~Vi~~~~~~~~~~~~----~~~g~~-~~--~~~~~~~~~~~~i~~~~~-~~  231 (296)
                      ++++++|+|++|++|.++++.+ .. .|++|++++++.++.+.+    ++.+.. ..  .+..+..++.+.+.++.. ..
T Consensus         3 ~~k~vlITGasggIG~~~a~~L-~~~~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g   81 (276)
T 1wma_A            3 GIHVALVTGGNKGIGLAIVRDL-CRLFSGDVVLTARDVTRGQAAVQQLQAEGLSPRFHQLDIDDLQSIRALRDFLRKEYG   81 (276)
T ss_dssp             CCCEEEESSCSSHHHHHHHHHH-HHHSSSEEEEEESSHHHHHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEeCCCcHHHHHHHHHH-HHhcCCeEEEEeCChHHHHHHHHHHHhcCCeeEEEECCCCCHHHHHHHHHHHHHhcC
Confidence            5789999999999999988877 44 799999999987765543    222322 22  233332333333332211 12


Q ss_pred             cccEEEECCCC
Q psy1959         232 YANVVFEAVGG  242 (296)
Q Consensus       232 g~d~vld~~g~  242 (296)
                      ++|++|++.|.
T Consensus        82 ~id~li~~Ag~   92 (276)
T 1wma_A           82 GLDVLVNNAGI   92 (276)
T ss_dssp             SEEEEEECCCC
T ss_pred             CCCEEEECCcc
Confidence            69999999884

>2pd6_A Estradiol 17-beta-dehydrogenase 8; short-chain dehydrogenase/reductase, steroid metabolism, LIP metabolism, structural genomics; HET: NAD; 2.00A {Homo sapiens}

Probab=96.72  E-value=0.0047  Score=52.69  Aligned_cols=81  Identities=21%  Similarity=0.150  Sum_probs=51.9

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHh-c---C-------C-cEEE--EcCCchhHHHHHHH
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQ-K---G-------A-WAAL--TFTNEKSLVNKVLE  226 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~-~---g-------~-~~~~--~~~~~~~~~~~i~~  226 (296)
                      .+++++|+|++|++|.++++.+ ...|++|+++++++++.+.+.+ +   +       . ...+  +..+..++.+.+.+
T Consensus         6 ~~k~vlITGasggiG~~la~~l-~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~   84 (264)
T 2pd6_A            6 RSALALVTGAGSGIGRAVSVRL-AGEGATVAACDLDRAAAQETVRLLGGPGSKEGPPRGNHAAFQADVSEARAARCLLEQ   84 (264)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHH-HHTTCEEEEEESSHHHHHHHHHTC------------CCEEEECCTTSHHHHHHHHHH
T ss_pred             CCCEEEEECCCChHHHHHHHHH-HHCCCEEEEEeCChHHHHHHHHHHHhcCccccccCcceEEEEecCCCHHHHHHHHHH
Confidence            4689999999999999988777 4479999999998887665533 2   1       1 1122  33332333333333


Q ss_pred             HhC-CCcc-cEEEECCCC
Q psy1959         227 VSG-GKYA-NVVFEAVGG  242 (296)
Q Consensus       227 ~~~-~~g~-d~vld~~g~  242 (296)
                      ... -..+ |+++++.|.
T Consensus        85 ~~~~~g~i~d~vi~~Ag~  102 (264)
T 2pd6_A           85 VQACFSRPPSVVVSCAGI  102 (264)
T ss_dssp             HHHHHSSCCSEEEECCCC
T ss_pred             HHHHhCCCCeEEEECCCc
Confidence            211 1246 999999884

>3ksu_A 3-oxoacyl-acyl carrier protein reductase; structural genomics, PSI-2, dehydrogenase, protein structure initiative; 2.30A {Oenococcus oeni psu-1}

Probab=96.71  E-value=0.012  Score=50.47  Aligned_cols=81  Identities=11%  Similarity=0.169  Sum_probs=50.7

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcch---HHHH----HhcCCcEE---EEcCCchhHHHHHHHHhC-
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDK---TDLI----RQKGAWAA---LTFTNEKSLVNKVLEVSG-  229 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~---~~~~----~~~g~~~~---~~~~~~~~~~~~i~~~~~-  229 (296)
                      .+++++|+|+++++|.++++.+ ...|++|+++++..+.   .+.+    ++.+....   .+..+..+..+.+.+... 
T Consensus        10 ~~k~vlVTGas~GIG~aia~~l-a~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~   88 (262)
T 3ksu_A           10 KNKVIVIAGGIKNLGALTAKTF-ALESVNLVLHYHQAKDSDTANKLKDELEDQGAKVALYQSDLSNEEEVAKLFDFAEKE   88 (262)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHH-TTSSCEEEEEESCGGGHHHHHHHHHHHHTTTCEEEEEECCCCSHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCchHHHHHHHHH-HHCCCEEEEEecCccCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHH
Confidence            5789999999999999988877 5579999998765443   2222    22343332   233332333333332211 


Q ss_pred             CCcccEEEECCCC
Q psy1959         230 GKYANVVFEAVGG  242 (296)
Q Consensus       230 ~~g~d~vld~~g~  242 (296)
                      -.++|+++++.|.
T Consensus        89 ~g~iD~lvnnAg~  101 (262)
T 3ksu_A           89 FGKVDIAINTVGK  101 (262)
T ss_dssp             HCSEEEEEECCCC
T ss_pred             cCCCCEEEECCCC
Confidence            1269999999983

>2q2v_A Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidoreductase; HET: NAD; 1.90A {Pseudomonas putida} PDB: 2q2q_A* 2q2w_A

Probab=96.71  E-value=0.0046  Score=52.80  Aligned_cols=81  Identities=15%  Similarity=0.133  Sum_probs=51.3

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcch--HHHHHhcCCcEEE---EcCCchhHHHHHHHHhC-CCccc
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDK--TDLIRQKGAWAAL---TFTNEKSLVNKVLEVSG-GKYAN  234 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~--~~~~~~~g~~~~~---~~~~~~~~~~~i~~~~~-~~g~d  234 (296)
                      .+++++|+|++|++|.++++.+ ...|++|+++++++++  .+.+.+.+.....   +..+..++.+.+.+... -.++|
T Consensus         3 ~~k~vlVTGas~giG~~ia~~l-~~~G~~V~~~~r~~~~~~~~~l~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~id   81 (255)
T 2q2v_A            3 KGKTALVTGSTSGIGLGIAQVL-ARAGANIVLNGFGDPAPALAEIARHGVKAVHHPADLSDVAQIEALFALAEREFGGVD   81 (255)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHH-HHTTCEEEEECSSCCHHHHHHHHTTSCCEEEECCCTTSHHHHHHHHHHHHHHHSSCS
T ss_pred             CCCEEEEeCCCcHHHHHHHHHH-HHCCCEEEEEeCCchHHHHHHHHhcCCceEEEeCCCCCHHHHHHHHHHHHHHcCCCC
Confidence            4689999999999999988777 4479999999987652  2233333443322   33332333333332211 12699


Q ss_pred             EEEECCCC
Q psy1959         235 VVFEAVGG  242 (296)
Q Consensus       235 ~vld~~g~  242 (296)
                      +++++.|.
T Consensus        82 ~lv~~Ag~   89 (255)
T 2q2v_A           82 ILVNNAGI   89 (255)
T ss_dssp             EEEECCCC
T ss_pred             EEEECCCC
Confidence            99999883

>3tsc_A Putative oxidoreductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, nucleotide; HET: NAD; 2.05A {Mycobacterium avium subsp} SCOP: c.2.1.0

Probab=96.70  E-value=0.0063  Score=52.63  Aligned_cols=81  Identities=17%  Similarity=0.086  Sum_probs=51.2

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeC-------------CcchHHHH----HhcCCcEEE---EcCCchhH
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCN-------------SEDKTDLI----RQKGAWAAL---TFTNEKSL  220 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~-------------~~~~~~~~----~~~g~~~~~---~~~~~~~~  220 (296)
                      .+++++|+|+++++|.++++.+ ...|++|+++++             ++++.+.+    ...+.....   +..+..+.
T Consensus        10 ~~k~~lVTGas~GIG~a~a~~l-a~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v   88 (277)
T 3tsc_A           10 EGRVAFITGAARGQGRAHAVRM-AAEGADIIAVDIAGKLPSCVPYDPASPDDLSETVRLVEAANRRIVAAVVDTRDFDRL   88 (277)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHH-HHTTCEEEEEECCSCCCTTCCSCCCCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHH
T ss_pred             CCCEEEEECCccHHHHHHHHHH-HHcCCEEEEEeccccccccccccccCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHH
Confidence            5789999999999999988777 457999999987             34443332    233433322   33332333


Q ss_pred             HHHHHHHhC-CCcccEEEECCCC
Q psy1959         221 VNKVLEVSG-GKYANVVFEAVGG  242 (296)
Q Consensus       221 ~~~i~~~~~-~~g~d~vld~~g~  242 (296)
                      .+.+.+... -..+|+++++.|.
T Consensus        89 ~~~~~~~~~~~g~id~lvnnAg~  111 (277)
T 3tsc_A           89 RKVVDDGVAALGRLDIIVANAGV  111 (277)
T ss_dssp             HHHHHHHHHHHSCCCEEEECCCC
T ss_pred             HHHHHHHHHHcCCCCEEEECCCC
Confidence            333333211 1269999999984

>3orf_A Dihydropteridine reductase; alpha-beta-alpha sandwich, rossmann fold, oxidoreductase (AC NADH), NADH binding, oxidoreductase; HET: NAD; 2.16A {Dictyostelium discoideum}

Probab=96.69  E-value=0.0047  Score=52.69  Aligned_cols=75  Identities=17%  Similarity=0.218  Sum_probs=51.3

Q ss_pred             CcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCcEEEEcCCchhHHHHHHHHhC-CCcccEEEECC
Q psy1959         162 KQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNKVLEVSG-GKYANVVFEAV  240 (296)
Q Consensus       162 g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~-~~g~d~vld~~  240 (296)
                      +++++|+|++|++|.+.++.+ ...|++|+++++++++...     ....++..+..+..+.+.+... ...+|+++++.
T Consensus        22 ~k~vlITGas~gIG~~la~~l-~~~G~~V~~~~r~~~~~~~-----~~~~~d~~d~~~v~~~~~~~~~~~g~iD~li~~A   95 (251)
T 3orf_A           22 SKNILVLGGSGALGAEVVKFF-KSKSWNTISIDFRENPNAD-----HSFTIKDSGEEEIKSVIEKINSKSIKVDTFVCAA   95 (251)
T ss_dssp             CCEEEEETTTSHHHHHHHHHH-HHTTCEEEEEESSCCTTSS-----EEEECSCSSHHHHHHHHHHHHTTTCCEEEEEECC
T ss_pred             CCEEEEECCCCHHHHHHHHHH-HHCCCEEEEEeCCcccccc-----cceEEEeCCHHHHHHHHHHHHHHcCCCCEEEECC
Confidence            689999999999999988877 4579999999998776431     1112223342344444444432 23699999999


Q ss_pred             CC
Q psy1959         241 GG  242 (296)
Q Consensus       241 g~  242 (296)
                      |.
T Consensus        96 g~   97 (251)
T 3orf_A           96 GG   97 (251)
T ss_dssp             CC
T ss_pred             cc
Confidence            83

>1xq6_A Unknown protein; structural genomics, protein structure initiative, CESG, AT5G02240, NADP, center for eukaryotic structural genomics; HET: NAP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1ybm_A* 2q46_A* 2q4b_A*

Probab=96.68  E-value=0.0047  Score=52.00  Aligned_cols=74  Identities=20%  Similarity=0.094  Sum_probs=50.7

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhC--CCEEEEEeCCcchHHHHHhcCCcEE-EEcCCchhHHHHHHHHhCCCcccEEE
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIY--KAKVIGVCNSEDKTDLIRQKGAWAA-LTFTNEKSLVNKVLEVSGGKYANVVF  237 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~--g~~Vi~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~i~~~~~~~g~d~vl  237 (296)
                      .+.+|+|+|++|.+|..+++.+ ...  |.+|+++++++++.+.+ ..+...+ .+..+    .+.+.+...  ++|++|
T Consensus         3 ~~~~ilVtGasG~iG~~l~~~l-~~~~~g~~V~~~~r~~~~~~~~-~~~~~~~~~D~~d----~~~~~~~~~--~~d~vi   74 (253)
T 1xq6_A            3 NLPTVLVTGASGRTGQIVYKKL-KEGSDKFVAKGLVRSAQGKEKI-GGEADVFIGDITD----ADSINPAFQ--GIDALV   74 (253)
T ss_dssp             SCCEEEEESTTSHHHHHHHHHH-HHTTTTCEEEEEESCHHHHHHT-TCCTTEEECCTTS----HHHHHHHHT--TCSEEE
T ss_pred             CCCEEEEEcCCcHHHHHHHHHH-HhcCCCcEEEEEEcCCCchhhc-CCCeeEEEecCCC----HHHHHHHHc--CCCEEE
Confidence            4678999999999999988888 345  78999999987765543 1223222 23333    234444443  689999


Q ss_pred             ECCCC
Q psy1959         238 EAVGG  242 (296)
Q Consensus       238 d~~g~  242 (296)
                      .+.|.
T Consensus        75 ~~a~~   79 (253)
T 1xq6_A           75 ILTSA   79 (253)
T ss_dssp             ECCCC
T ss_pred             Eeccc
Confidence            99874

>2cfc_A 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidoreductase; HET: NAD KPC; 1.8A {Xanthobacter autotrophicus}

Probab=96.68  E-value=0.0041  Score=52.65  Aligned_cols=80  Identities=15%  Similarity=0.109  Sum_probs=51.9

Q ss_pred             CcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHh-c----CCcEE---EEcCCchhHHHHHHHHhC-CCc
Q psy1959         162 KQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQ-K----GAWAA---LTFTNEKSLVNKVLEVSG-GKY  232 (296)
Q Consensus       162 g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~-~----g~~~~---~~~~~~~~~~~~i~~~~~-~~g  232 (296)
                      +++++|+|++|++|.+++..+ ...|++|+++++++++.+.+.+ +    +....   .+..+..++.+.+.+... ..+
T Consensus         2 ~k~vlItGasggiG~~~a~~l-~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   80 (250)
T 2cfc_A            2 SRVAIVTGASSGNGLAIATRF-LARGDRVAALDLSAETLEETARTHWHAYADKVLRVRADVADEGDVNAAIAATMEQFGA   80 (250)
T ss_dssp             CCEEEEETTTSHHHHHHHHHH-HHTTCEEEEEESCHHHHHHHHHHHSTTTGGGEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CCEEEEeCCCchHHHHHHHHH-HHCCCEEEEEeCCHHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHHhCC
Confidence            578999999999999988777 4479999999998877665432 2    22222   233332333333332211 126


Q ss_pred             ccEEEECCCC
Q psy1959         233 ANVVFEAVGG  242 (296)
Q Consensus       233 ~d~vld~~g~  242 (296)
                      +|+++++.|.
T Consensus        81 id~li~~Ag~   90 (250)
T 2cfc_A           81 IDVLVNNAGI   90 (250)
T ss_dssp             CCEEEECCCC
T ss_pred             CCEEEECCCC
Confidence            9999999874

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=96.68  E-value=0.0095  Score=46.03  Aligned_cols=77  Identities=13%  Similarity=0.081  Sum_probs=57.3

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCcEEEEcCCchhHHHHHHHHhCCCcccEEEECC
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNKVLEVSGGKYANVVFEAV  240 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~g~d~vld~~  240 (296)
                      -.++++|.|. |.+|+.+++.+ +..|.+|+++++++++.+.+++.|...+. .+.  .-.+.+.+ .+-..+|+++-++
T Consensus         6 ~~~~viIiG~-G~~G~~la~~L-~~~g~~v~vid~~~~~~~~~~~~g~~~i~-gd~--~~~~~l~~-a~i~~ad~vi~~~   79 (140)
T 3fwz_A            6 ICNHALLVGY-GRVGSLLGEKL-LASDIPLVVIETSRTRVDELRERGVRAVL-GNA--ANEEIMQL-AHLECAKWLILTI   79 (140)
T ss_dssp             CCSCEEEECC-SHHHHHHHHHH-HHTTCCEEEEESCHHHHHHHHHTTCEEEE-SCT--TSHHHHHH-TTGGGCSEEEECC
T ss_pred             CCCCEEEECc-CHHHHHHHHHH-HHCCCCEEEEECCHHHHHHHHHcCCCEEE-CCC--CCHHHHHh-cCcccCCEEEEEC
Confidence            3568999997 99999999999 55799999999999999999988875432 221  11222333 2345799999999


Q ss_pred             CCc
Q psy1959         241 GGE  243 (296)
Q Consensus       241 g~~  243 (296)
                      +++
T Consensus        80 ~~~   82 (140)
T 3fwz_A           80 PNG   82 (140)
T ss_dssp             SCH
T ss_pred             CCh
Confidence            984

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=96.67  E-value=0.012  Score=45.34  Aligned_cols=75  Identities=17%  Similarity=0.167  Sum_probs=56.0

Q ss_pred             CcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCcEEE-EcCCchhHHHHHHHHhCCCcccEEEECC
Q psy1959         162 KQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAAL-TFTNEKSLVNKVLEVSGGKYANVVFEAV  240 (296)
Q Consensus       162 g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~i~~~~~~~g~d~vld~~  240 (296)
                      ..+++|.|+ |.+|+..++.+ ...|.+|+++++++++.+.+++.+..... +..+    .+.+.+. +-.++|+++.+.
T Consensus         6 ~~~v~I~G~-G~iG~~la~~L-~~~g~~V~~id~~~~~~~~~~~~~~~~~~gd~~~----~~~l~~~-~~~~~d~vi~~~   78 (141)
T 3llv_A            6 RYEYIVIGS-EAAGVGLVREL-TAAGKKVLAVDKSKEKIELLEDEGFDAVIADPTD----ESFYRSL-DLEGVSAVLITG   78 (141)
T ss_dssp             CCSEEEECC-SHHHHHHHHHH-HHTTCCEEEEESCHHHHHHHHHTTCEEEECCTTC----HHHHHHS-CCTTCSEEEECC
T ss_pred             CCEEEEECC-CHHHHHHHHHH-HHCCCeEEEEECCHHHHHHHHHCCCcEEECCCCC----HHHHHhC-CcccCCEEEEec
Confidence            467999998 99999999888 45799999999999999998887764332 2222    2233333 345799999999


Q ss_pred             CCc
Q psy1959         241 GGE  243 (296)
Q Consensus       241 g~~  243 (296)
                      ++.
T Consensus        79 ~~~   81 (141)
T 3llv_A           79 SDD   81 (141)
T ss_dssp             SCH
T ss_pred             CCH
Confidence            974

>3uce_A Dehydrogenase; rossmann fold, oxidoreductase; HET: NDP; 1.80A {Vibrio vulnificus}

Probab=96.66  E-value=0.0033  Score=52.56  Aligned_cols=65  Identities=15%  Similarity=0.189  Sum_probs=47.7

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCcEEEEcCCchhHHHHHHHHhCCCcccEEEECC
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNKVLEVSGGKYANVVFEAV  240 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~g~d~vld~~  240 (296)
                      .+++++|+|+++++|.+.++.+ ...|++|++++++++             .+..+..+..+.+.+.   ..+|+++++.
T Consensus         5 ~~k~vlVTGas~gIG~~~a~~l-~~~G~~V~~~~r~~~-------------~D~~~~~~v~~~~~~~---g~id~lv~nA   67 (223)
T 3uce_A            5 DKTVYVVLGGTSGIGAELAKQL-ESEHTIVHVASRQTG-------------LDISDEKSVYHYFETI---GAFDHLIVTA   67 (223)
T ss_dssp             CCEEEEEETTTSHHHHHHHHHH-CSTTEEEEEESGGGT-------------CCTTCHHHHHHHHHHH---CSEEEEEECC
T ss_pred             CCCEEEEECCCCHHHHHHHHHH-HHCCCEEEEecCCcc-------------cCCCCHHHHHHHHHHh---CCCCEEEECC
Confidence            5789999999999999988887 557999999987755             2334423333334333   3799999998


Q ss_pred             CC
Q psy1959         241 GG  242 (296)
Q Consensus       241 g~  242 (296)
                      |.
T Consensus        68 g~   69 (223)
T 3uce_A           68 GS   69 (223)
T ss_dssp             CC
T ss_pred             CC
Confidence            84

>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334}

Probab=96.66  E-value=0.0056  Score=50.74  Aligned_cols=70  Identities=17%  Similarity=0.040  Sum_probs=50.6

Q ss_pred             EEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCcEE-EEcCCchhHHHHHHHHhCCCcccEEEECCCC
Q psy1959         164 TVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAA-LTFTNEKSLVNKVLEVSGGKYANVVFEAVGG  242 (296)
Q Consensus       164 ~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~i~~~~~~~g~d~vld~~g~  242 (296)
                      +|+|+|++|.+|..+++.+ ...|.+|+++++++++...+...+...+ .+..+ .+.     +..  .++|++|++.|.
T Consensus         2 kilVtGatG~iG~~l~~~L-~~~g~~V~~~~R~~~~~~~~~~~~~~~~~~D~~d-~~~-----~~~--~~~d~vi~~ag~   72 (224)
T 3h2s_A            2 KIAVLGATGRAGSAIVAEA-RRRGHEVLAVVRDPQKAADRLGATVATLVKEPLV-LTE-----ADL--DSVDAVVDALSV   72 (224)
T ss_dssp             EEEEETTTSHHHHHHHHHH-HHTTCEEEEEESCHHHHHHHTCTTSEEEECCGGG-CCH-----HHH--TTCSEEEECCCC
T ss_pred             EEEEEcCCCHHHHHHHHHH-HHCCCEEEEEEecccccccccCCCceEEeccccc-ccH-----hhc--ccCCEEEECCcc
Confidence            5899999999999988888 4579999999999888776654454332 23332 111     222  378999999986

>1gz6_A Estradiol 17 beta-dehydrogenase 4; 17BETA-HSD4, MFE-2, beta-oxidation, peroxisome, SDR, steroid biosynthesis, oxidoreductase, NADP; HET: NAI; 2.38A {Rattus norvegicus} SCOP: c.2.1.2 PDB: 1zbq_A*

Probab=96.66  E-value=0.0078  Score=53.47  Aligned_cols=81  Identities=27%  Similarity=0.221  Sum_probs=53.1

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeC---------CcchHHH----HHhcCCcEEEEcCCchhHHHHHHHH
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCN---------SEDKTDL----IRQKGAWAALTFTNEKSLVNKVLEV  227 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~---------~~~~~~~----~~~~g~~~~~~~~~~~~~~~~i~~~  227 (296)
                      .|++++|+|++|++|.++++.+ ...|++|++.++         +.++.+.    +++.+.....+..+..+..+.+.+.
T Consensus         8 ~gk~~lVTGas~GIG~~~a~~L-a~~Ga~Vv~~~~~~~~~~~~R~~~~~~~~~~~l~~~~~~~~~D~~~~~~~~~~~~~~   86 (319)
T 1gz6_A            8 DGRVVLVTGAGGGLGRAYALAF-AERGALVVVNDLGGDFKGVGKGSSAADKVVEEIRRRGGKAVANYDSVEAGEKLVKTA   86 (319)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHH-HHTTCEEEEECCCBCTTSCBCCSHHHHHHHHHHHHTTCEEEEECCCGGGHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHH-HHCCCEEEEEcCCcccccccCCHHHHHHHHHHHHhhCCeEEEeCCCHHHHHHHHHHH
Confidence            5789999999999999988877 447999999754         3444332    3334544455665534443333332


Q ss_pred             hC-CCcccEEEECCCC
Q psy1959         228 SG-GKYANVVFEAVGG  242 (296)
Q Consensus       228 ~~-~~g~d~vld~~g~  242 (296)
                      .. ...+|++|++.|.
T Consensus        87 ~~~~g~iD~lVnnAG~  102 (319)
T 1gz6_A           87 LDTFGRIDVVVNNAGI  102 (319)
T ss_dssp             HHHTSCCCEEEECCCC
T ss_pred             HHHcCCCCEEEECCCC
Confidence            11 2369999999983

>3pgx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.85A {Mycobacterium avium} SCOP: c.2.1.0

Probab=96.66  E-value=0.0057  Score=53.03  Aligned_cols=81  Identities=19%  Similarity=0.144  Sum_probs=52.0

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeC-------------CcchHHHH----HhcCCcEEE---EcCCchhH
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCN-------------SEDKTDLI----RQKGAWAAL---TFTNEKSL  220 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~-------------~~~~~~~~----~~~g~~~~~---~~~~~~~~  220 (296)
                      .|++++|+|+++++|.++++.+ ...|++|+++++             ++++.+.+    ++.+.....   +..+..+.
T Consensus        14 ~gk~~lVTGas~gIG~a~a~~l-a~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v   92 (280)
T 3pgx_A           14 QGRVAFITGAARGQGRSHAVRL-AAEGADIIACDICAPVSASVTYAPASPEDLDETARLVEDQGRKALTRVLDVRDDAAL   92 (280)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHH-HHTTCEEEEEECCSCCCTTCCSCCCCHHHHHHHHHHHHTTTCCEEEEECCTTCHHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHH-HHCCCEEEEEeccccccccccccccCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHH
Confidence            6889999999999999988777 457999999987             44444433    233443322   33332333


Q ss_pred             HHHHHHHhC-CCcccEEEECCCC
Q psy1959         221 VNKVLEVSG-GKYANVVFEAVGG  242 (296)
Q Consensus       221 ~~~i~~~~~-~~g~d~vld~~g~  242 (296)
                      .+.+.+... -..+|+++++.|.
T Consensus        93 ~~~~~~~~~~~g~id~lvnnAg~  115 (280)
T 3pgx_A           93 RELVADGMEQFGRLDVVVANAGV  115 (280)
T ss_dssp             HHHHHHHHHHHCCCCEEEECCCC
T ss_pred             HHHHHHHHHHcCCCCEEEECCCC
Confidence            333332211 1269999999984

>3vtz_A Glucose 1-dehydrogenase; rossmann fold, oxidoreductase, NAD binding; 2.30A {Thermoplasma volcanium}

Probab=96.65  E-value=0.0023  Score=55.32  Aligned_cols=78  Identities=24%  Similarity=0.292  Sum_probs=50.6

Q ss_pred             CCCCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCcEE--EEcCCchhHHHHHHHHhC-CCcccE
Q psy1959         159 LKEKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAA--LTFTNEKSLVNKVLEVSG-GKYANV  235 (296)
Q Consensus       159 ~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~~~--~~~~~~~~~~~~i~~~~~-~~g~d~  235 (296)
                      ..++++++|+|+++++|.++++.+ ...|++|+++++++++..     +....  .+..+..+..+.+.+... -..+|+
T Consensus        11 ~~~~k~vlVTGas~GIG~aia~~l-~~~G~~V~~~~r~~~~~~-----~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iD~   84 (269)
T 3vtz_A           11 EFTDKVAIVTGGSSGIGLAVVDAL-VRYGAKVVSVSLDEKSDV-----NVSDHFKIDVTNEEEVKEAVEKTTKKYGRIDI   84 (269)
T ss_dssp             TTTTCEEEESSTTSHHHHHHHHHH-HHTTCEEEEEESCC--CT-----TSSEEEECCTTCHHHHHHHHHHHHHHHSCCCE
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHH-HHCCCEEEEEeCCchhcc-----CceeEEEecCCCHHHHHHHHHHHHHHcCCCCE
Confidence            457899999999999999988777 447999999998776542     11122  334442333333333211 127999


Q ss_pred             EEECCCC
Q psy1959         236 VFEAVGG  242 (296)
Q Consensus       236 vld~~g~  242 (296)
                      ++++.|.
T Consensus        85 lv~nAg~   91 (269)
T 3vtz_A           85 LVNNAGI   91 (269)
T ss_dssp             EEECCCC
T ss_pred             EEECCCc
Confidence            9999984

>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans}

Probab=96.64  E-value=0.017  Score=50.65  Aligned_cols=87  Identities=13%  Similarity=0.112  Sum_probs=63.4

Q ss_pred             CCCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCcEEEEcCCchhHHHHHHHHhCCCcccEEEEC
Q psy1959         160 KEKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNKVLEVSGGKYANVVFEA  239 (296)
Q Consensus       160 ~~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~g~d~vld~  239 (296)
                      -+|++++|+|. |.+|+++++.+ +..|++|++.+++.++.+.++++|+.. +..   .++.    +..  ...|+++.+
T Consensus       153 l~g~~v~IiG~-G~iG~~~a~~l-~~~G~~V~~~dr~~~~~~~~~~~g~~~-~~~---~~l~----~~l--~~aDvVi~~  220 (293)
T 3d4o_A          153 IHGANVAVLGL-GRVGMSVARKF-AALGAKVKVGARESDLLARIAEMGMEP-FHI---SKAA----QEL--RDVDVCINT  220 (293)
T ss_dssp             STTCEEEEECC-SHHHHHHHHHH-HHTTCEEEEEESSHHHHHHHHHTTSEE-EEG---GGHH----HHT--TTCSEEEEC
T ss_pred             CCCCEEEEEee-CHHHHHHHHHH-HhCCCEEEEEECCHHHHHHHHHCCCee-cCh---hhHH----HHh--cCCCEEEEC
Confidence            37899999997 99999999999 668999999999988877777777642 222   2222    222  368999999


Q ss_pred             CCCcc-HHHHHHHhhccCceE
Q psy1959         240 VGGED-KTDLIRQKGAWAALT  259 (296)
Q Consensus       240 ~g~~~-~~~~~~~lg~~~g~~  259 (296)
                      +.... -...+..+ ++++.+
T Consensus       221 ~p~~~i~~~~l~~m-k~~~~l  240 (293)
T 3d4o_A          221 IPALVVTANVLAEM-PSHTFV  240 (293)
T ss_dssp             CSSCCBCHHHHHHS-CTTCEE
T ss_pred             CChHHhCHHHHHhc-CCCCEE
Confidence            97643 34566777 555544

>3asu_A Short-chain dehydrogenase/reductase SDR; SDR family, rossmann-fold, short-chain dehydrogenase/reducta ALLO-threonine dehydrogenase; 1.90A {Escherichia coli} PDB: 3asv_A*

Probab=96.64  E-value=0.006  Score=51.98  Aligned_cols=79  Identities=18%  Similarity=0.194  Sum_probs=52.4

Q ss_pred             cEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHH-hcCCcEE---EEcCCchhHHHHHHHHhC-CCcccEEE
Q psy1959         163 QTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIR-QKGAWAA---LTFTNEKSLVNKVLEVSG-GKYANVVF  237 (296)
Q Consensus       163 ~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~-~~g~~~~---~~~~~~~~~~~~i~~~~~-~~g~d~vl  237 (296)
                      ++++|+|++|++|.++++.+ ...|++|+++++++++.+.+. +++....   .+..+..+..+.+.+... -.++|+++
T Consensus         1 k~vlVTGas~gIG~aia~~l-~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iD~lv   79 (248)
T 3asu_A            1 MIVLVTGATAGFGECITRRF-IQQGHKVIATGRRQERLQELKDELGDNLYIAQLDVRNRAAIEEMLASLPAEWCNIDILV   79 (248)
T ss_dssp             CEEEETTTTSTTHHHHHHHH-HHTTCEEEEEESCHHHHHHHHHHHCTTEEEEECCTTCHHHHHHHHHTSCTTTCCCCEEE
T ss_pred             CEEEEECCCChHHHHHHHHH-HHCCCEEEEEeCCHHHHHHHHHHhcCceEEEEcCCCCHHHHHHHHHHHHHhCCCCCEEE
Confidence            36899999999999988777 447999999999888776554 3333222   233332333333333322 13699999


Q ss_pred             ECCCC
Q psy1959         238 EAVGG  242 (296)
Q Consensus       238 d~~g~  242 (296)
                      ++.|.
T Consensus        80 nnAg~   84 (248)
T 3asu_A           80 NNAGL   84 (248)
T ss_dssp             ECCCC
T ss_pred             ECCCc
Confidence            99873

>4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein structure initiative, PSI-biology; 2.50A {Sinorhizobium meliloti}

Probab=96.64  E-value=0.015  Score=50.44  Aligned_cols=81  Identities=14%  Similarity=0.088  Sum_probs=52.0

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeC-CcchHHHH----HhcCCcEE---EEcCCchhHHHHHHHHhC-CC
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCN-SEDKTDLI----RQKGAWAA---LTFTNEKSLVNKVLEVSG-GK  231 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~-~~~~~~~~----~~~g~~~~---~~~~~~~~~~~~i~~~~~-~~  231 (296)
                      .+++++|+|+++++|.++++.+ ...|++|+++++ ++++.+.+    ++.+....   .+..+..+..+.+.+... -.
T Consensus        28 ~~k~~lVTGas~GIG~aia~~l-a~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g  106 (280)
T 4da9_A           28 ARPVAIVTGGRRGIGLGIARAL-AASGFDIAITGIGDAEGVAPVIAELSGLGARVIFLRADLADLSSHQATVDAVVAEFG  106 (280)
T ss_dssp             CCCEEEEETTTSHHHHHHHHHH-HHTTCEEEEEESCCHHHHHHHHHHHHHTTCCEEEEECCTTSGGGHHHHHHHHHHHHS
T ss_pred             CCCEEEEecCCCHHHHHHHHHH-HHCCCeEEEEeCCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHHcC
Confidence            6789999999999999988877 457999999985 55544433    33344332   233332344333333211 12


Q ss_pred             cccEEEECCCC
Q psy1959         232 YANVVFEAVGG  242 (296)
Q Consensus       232 g~d~vld~~g~  242 (296)
                      .+|+++++.|.
T Consensus       107 ~iD~lvnnAg~  117 (280)
T 4da9_A          107 RIDCLVNNAGI  117 (280)
T ss_dssp             CCCEEEEECC-
T ss_pred             CCCEEEECCCc
Confidence            69999999885

>3guy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Vibrio parahaemolyticus}

Probab=96.63  E-value=0.0064  Score=50.95  Aligned_cols=77  Identities=14%  Similarity=0.179  Sum_probs=51.2

Q ss_pred             cEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHh-cCCcE---EEEcCCchhHHHHHHHHhCCCcccEEEE
Q psy1959         163 QTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQ-KGAWA---ALTFTNEKSLVNKVLEVSGGKYANVVFE  238 (296)
Q Consensus       163 ~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~-~g~~~---~~~~~~~~~~~~~i~~~~~~~g~d~vld  238 (296)
                      ++++|+|++|++|.+.++.+ ...|++|+++++++++.+.+.+ ++...   ..+..+..+..+.+.+. . ..+|++++
T Consensus         2 k~vlVTGas~gIG~~~a~~l-~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~-~-~~~d~lv~   78 (230)
T 3guy_A            2 SLIVITGASSGLGAELAKLY-DAEGKATYLTGRSESKLSTVTNCLSNNVGYRARDLASHQEVEQLFEQL-D-SIPSTVVH   78 (230)
T ss_dssp             -CEEEESTTSHHHHHHHHHH-HHTTCCEEEEESCHHHHHHHHHTCSSCCCEEECCTTCHHHHHHHHHSC-S-SCCSEEEE
T ss_pred             CEEEEecCCchHHHHHHHHH-HHCCCEEEEEeCCHHHHHHHHHHHhhccCeEeecCCCHHHHHHHHHHH-h-hcCCEEEE
Confidence            36899999999999988777 4579999999999988877654 33221   12333423333333332 2 23499999


Q ss_pred             CCCC
Q psy1959         239 AVGG  242 (296)
Q Consensus       239 ~~g~  242 (296)
                      +.|.
T Consensus        79 ~Ag~   82 (230)
T 3guy_A           79 SAGS   82 (230)
T ss_dssp             CCCC
T ss_pred             eCCc
Confidence            9983

>3d7l_A LIN1944 protein; APC89317, structural genomics, PS protein structure initiative, midwest center for structural genomics, MCSG; 2.06A {Listeria innocua}

Probab=96.63  E-value=0.0079  Score=49.11  Aligned_cols=64  Identities=25%  Similarity=0.290  Sum_probs=46.6

Q ss_pred             EEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCcEEEEcCCchhHHHHHHHHhCCCcccEEEECCCC
Q psy1959         164 TVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNKVLEVSGGKYANVVFEAVGG  242 (296)
Q Consensus       164 ~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~g~d~vld~~g~  242 (296)
                      +++|+|++|++|.+.++.+ . .|++|++++++++          ....+..+..++.+.+.+.   ..+|+++.+.|.
T Consensus         5 ~vlVtGasg~iG~~~~~~l-~-~g~~V~~~~r~~~----------~~~~D~~~~~~~~~~~~~~---~~~d~vi~~ag~   68 (202)
T 3d7l_A            5 KILLIGASGTLGSAVKERL-E-KKAEVITAGRHSG----------DVTVDITNIDSIKKMYEQV---GKVDAIVSATGS   68 (202)
T ss_dssp             EEEEETTTSHHHHHHHHHH-T-TTSEEEEEESSSS----------SEECCTTCHHHHHHHHHHH---CCEEEEEECCCC
T ss_pred             EEEEEcCCcHHHHHHHHHH-H-CCCeEEEEecCcc----------ceeeecCCHHHHHHHHHHh---CCCCEEEECCCC
Confidence            7999999999999999998 6 7999999998764          1223444423343444433   269999999883

>3a28_C L-2.3-butanediol dehydrogenase; chiral substrate recognition, oxidoreductase; HET: NAD; 2.00A {Brevibacterium saccharolyticum}

Probab=96.63  E-value=0.0051  Score=52.62  Aligned_cols=80  Identities=13%  Similarity=0.078  Sum_probs=50.9

Q ss_pred             CcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcch--HHHHH----hcCCcEE---EEcCCchhHHHHHHHHhC-CC
Q psy1959         162 KQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDK--TDLIR----QKGAWAA---LTFTNEKSLVNKVLEVSG-GK  231 (296)
Q Consensus       162 g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~--~~~~~----~~g~~~~---~~~~~~~~~~~~i~~~~~-~~  231 (296)
                      +++++|+|++|++|.++++.+ ...|++|+++++++++  .+.+.    +.+....   .+..+..+..+.+.+... -.
T Consensus         2 ~k~vlVTGas~gIG~~ia~~l-~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g   80 (258)
T 3a28_C            2 SKVAMVTGGAQGIGRGISEKL-AADGFDIAVADLPQQEEQAAETIKLIEAADQKAVFVGLDVTDKANFDSAIDEAAEKLG   80 (258)
T ss_dssp             CCEEEEETTTSHHHHHHHHHH-HHHTCEEEEEECGGGHHHHHHHHHHHHTTTCCEEEEECCTTCHHHHHHHHHHHHHHHT
T ss_pred             CCEEEEeCCCcHHHHHHHHHH-HHCCCEEEEEeCCcchHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHhC
Confidence            578999999999999988777 3469999999988776  44332    2243322   233332333333332211 12


Q ss_pred             cccEEEECCCC
Q psy1959         232 YANVVFEAVGG  242 (296)
Q Consensus       232 g~d~vld~~g~  242 (296)
                      ++|+++++.|.
T Consensus        81 ~iD~lv~nAg~   91 (258)
T 3a28_C           81 GFDVLVNNAGI   91 (258)
T ss_dssp             CCCEEEECCCC
T ss_pred             CCCEEEECCCC
Confidence            69999999884

>3oec_A Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; ssgcid, structural genomics; 1.95A {Mycobacterium thermoresistibile}

Probab=96.63  E-value=0.0054  Score=54.36  Aligned_cols=81  Identities=15%  Similarity=0.128  Sum_probs=51.5

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCC------------cchHHH----HHhcCCcEEE---EcCCchhHH
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNS------------EDKTDL----IRQKGAWAAL---TFTNEKSLV  221 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~------------~~~~~~----~~~~g~~~~~---~~~~~~~~~  221 (296)
                      .|++++|+|+++++|.++++.+ ...|++|++++++            .++.+.    +++.+.....   +..+..+..
T Consensus        45 ~gk~~lVTGas~GIG~aia~~l-a~~G~~Vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~  123 (317)
T 3oec_A           45 QGKVAFITGAARGQGRTHAVRL-AQDGADIVAIDLCRQQPNLDYAQGSPEELKETVRLVEEQGRRIIARQADVRDLASLQ  123 (317)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHH-HHTTCEEEEEECCCCCTTCCSCCCCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHH-HHCCCeEEEEecccccccccccccCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHH
Confidence            6789999999999999988777 4579999999875            333332    2334543332   333323333


Q ss_pred             HHHHHHhC-CCcccEEEECCCC
Q psy1959         222 NKVLEVSG-GKYANVVFEAVGG  242 (296)
Q Consensus       222 ~~i~~~~~-~~g~d~vld~~g~  242 (296)
                      +.+.+... -..+|+++++.|.
T Consensus       124 ~~~~~~~~~~g~iD~lVnnAg~  145 (317)
T 3oec_A          124 AVVDEALAEFGHIDILVSNVGI  145 (317)
T ss_dssp             HHHHHHHHHHSCCCEEEECCCC
T ss_pred             HHHHHHHHHcCCCCEEEECCCC
Confidence            33333211 1269999999984

>2hq1_A Glucose/ribitol dehydrogenase; CTH-1438, structural genomics, southeast collaboratory for structural genomics, secsg, PSI; 1.90A {Clostridium thermocellum}

Probab=96.63  E-value=0.0054  Score=51.79  Aligned_cols=81  Identities=17%  Similarity=0.157  Sum_probs=49.6

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEE-eCCcchHHHH----HhcCCcEEE---EcCCchhHHHHHHHHhC-CC
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGV-CNSEDKTDLI----RQKGAWAAL---TFTNEKSLVNKVLEVSG-GK  231 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~-~~~~~~~~~~----~~~g~~~~~---~~~~~~~~~~~i~~~~~-~~  231 (296)
                      ++++++|+|++|++|.++++.+ ...|++|+++ .+++++.+.+    ++.+....+   +..+..+..+.+.+... ..
T Consensus         4 ~~~~vlItGasggiG~~~a~~l-~~~G~~V~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~   82 (247)
T 2hq1_A            4 KGKTAIVTGSSRGLGKAIAWKL-GNMGANIVLNGSPASTSLDATAEEFKAAGINVVVAKGDVKNPEDVENMVKTAMDAFG   82 (247)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHH-HHTTCEEEEEECTTCSHHHHHHHHHHHTTCCEEEEESCTTSHHHHHHHHHHHHHHHS
T ss_pred             CCcEEEEECCCchHHHHHHHHH-HHCCCEEEEEcCcCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHhcC
Confidence            4689999999999999988877 4579999998 5565554433    233443322   23332333333332211 12


Q ss_pred             cccEEEECCCC
Q psy1959         232 YANVVFEAVGG  242 (296)
Q Consensus       232 g~d~vld~~g~  242 (296)
                      ++|+++++.|.
T Consensus        83 ~~d~vi~~Ag~   93 (247)
T 2hq1_A           83 RIDILVNNAGI   93 (247)
T ss_dssp             CCCEEEECC--
T ss_pred             CCCEEEECCCC
Confidence            69999999874

>4h15_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, nysgrc; HET: MSE; 1.45A {Sinorhizobium meliloti} PDB: 4h16_A*

Probab=96.62  E-value=0.0033  Score=54.33  Aligned_cols=77  Identities=16%  Similarity=0.159  Sum_probs=49.1

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCcEEEEcCCchhHHHHHHHHhC-CCcccEEEEC
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNKVLEVSG-GKYANVVFEA  239 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~-~~g~d~vld~  239 (296)
                      +|++++|+|+++++|++.++.+ ...|++|++.++++++.. .+.  .....+..+..+....+.+... -.++|+++++
T Consensus        10 ~GK~alVTGas~GIG~aia~~l-a~~Ga~V~~~~r~~~~~~-~~~--~~~~~Dv~~~~~v~~~~~~~~~~~G~iDilVnn   85 (261)
T 4h15_A           10 RGKRALITAGTKGAGAATVSLF-LELGAQVLTTARARPEGL-PEE--LFVEADLTTKEGCAIVAEATRQRLGGVDVIVHM   85 (261)
T ss_dssp             TTCEEEESCCSSHHHHHHHHHH-HHTTCEEEEEESSCCTTS-CTT--TEEECCTTSHHHHHHHHHHHHHHTSSCSEEEEC
T ss_pred             CCCEEEEeccCcHHHHHHHHHH-HHcCCEEEEEECCchhCC-CcE--EEEEcCCCCHHHHHHHHHHHHHHcCCCCEEEEC
Confidence            6899999999999999988777 457999999998655310 011  1112333342333333333221 1369999998


Q ss_pred             CC
Q psy1959         240 VG  241 (296)
Q Consensus       240 ~g  241 (296)
                      .|
T Consensus        86 AG   87 (261)
T 4h15_A           86 LG   87 (261)
T ss_dssp             CC
T ss_pred             CC
Confidence            87

>3v2h_A D-beta-hydroxybutyrate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 3.00A {Sinorhizobium meliloti}

Probab=96.62  E-value=0.0059  Score=53.07  Aligned_cols=81  Identities=15%  Similarity=0.147  Sum_probs=51.3

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeC-CcchHHHHH----hc-CCcEEE---EcCCchhHHHHHHHHhC-C
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCN-SEDKTDLIR----QK-GAWAAL---TFTNEKSLVNKVLEVSG-G  230 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~-~~~~~~~~~----~~-g~~~~~---~~~~~~~~~~~i~~~~~-~  230 (296)
                      .+++++|+|+++++|.+.++.+ ...|++|+++++ ++++.+.+.    +. +.....   +..+..+..+.+.+... -
T Consensus        24 ~~k~~lVTGas~GIG~~ia~~l-a~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~  102 (281)
T 3v2h_A           24 MTKTAVITGSTSGIGLAIARTL-AKAGANIVLNGFGAPDEIRTVTDEVAGLSSGTVLHHPADMTKPSEIADMMAMVADRF  102 (281)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHH-HHTTCEEEEECCCCHHHHHHHHHHHHTTCSSCEEEECCCTTCHHHHHHHHHHHHHHT
T ss_pred             CCCEEEEeCCCcHHHHHHHHHH-HHCCCEEEEEeCCChHHHHHHHHHHhhccCCcEEEEeCCCCCHHHHHHHHHHHHHHC
Confidence            5789999999999999988777 457999999998 444444332    22 332222   33332333333333221 1


Q ss_pred             CcccEEEECCCC
Q psy1959         231 KYANVVFEAVGG  242 (296)
Q Consensus       231 ~g~d~vld~~g~  242 (296)
                      .++|+++++.|.
T Consensus       103 g~iD~lv~nAg~  114 (281)
T 3v2h_A          103 GGADILVNNAGV  114 (281)
T ss_dssp             SSCSEEEECCCC
T ss_pred             CCCCEEEECCCC
Confidence            379999999984

>3qlj_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 1.80A {Mycobacterium avium}

Probab=96.61  E-value=0.0044  Score=54.98  Aligned_cols=81  Identities=20%  Similarity=0.154  Sum_probs=51.4

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCC----------cchHHH----HHhcCCcEEE---EcCCchhHHHH
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNS----------EDKTDL----IRQKGAWAAL---TFTNEKSLVNK  223 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~----------~~~~~~----~~~~g~~~~~---~~~~~~~~~~~  223 (296)
                      .|++++|+|+++++|.+.++.+ ...|++|++++++          +++.+.    +.+.+.....   +..+..+..+.
T Consensus        26 ~gk~vlVTGas~GIG~aia~~l-a~~G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~  104 (322)
T 3qlj_A           26 DGRVVIVTGAGGGIGRAHALAF-AAEGARVVVNDIGVGLDGSPASGGSAAQSVVDEITAAGGEAVADGSNVADWDQAAGL  104 (322)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHH-HHTTCEEEEECCCBCTTSSBTCTTSHHHHHHHHHHHTTCEEEEECCCTTSHHHHHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHH-HHCCCEEEEEeCcccccccccccHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHH
Confidence            6889999999999999987777 4479999999876          444333    3334543332   22332233333


Q ss_pred             HHHHhC-CCcccEEEECCCC
Q psy1959         224 VLEVSG-GKYANVVFEAVGG  242 (296)
Q Consensus       224 i~~~~~-~~g~d~vld~~g~  242 (296)
                      +.+... -..+|+++++.|.
T Consensus       105 ~~~~~~~~g~iD~lv~nAg~  124 (322)
T 3qlj_A          105 IQTAVETFGGLDVLVNNAGI  124 (322)
T ss_dssp             HHHHHHHHSCCCEEECCCCC
T ss_pred             HHHHHHHcCCCCEEEECCCC
Confidence            332211 1269999999984

>3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A*

Probab=96.61  E-value=0.01  Score=50.89  Aligned_cols=81  Identities=9%  Similarity=0.038  Sum_probs=51.6

Q ss_pred             CCcEEEEEcCCCc--HHHHHHHHHHHhCCCEEEEEeCCcchHHHHHh----cCC--cEE--EEcCCchhHHHHHHHHhC-
Q psy1959         161 EKQTVLVTAAGGG--LGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQ----KGA--WAA--LTFTNEKSLVNKVLEVSG-  229 (296)
Q Consensus       161 ~g~~vlI~Ga~g~--vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~----~g~--~~~--~~~~~~~~~~~~i~~~~~-  229 (296)
                      .+++++|+|++|.  +|.+.++.+ ...|++|++++++++..+.+++    .+.  ...  .+..+..+..+.+.+... 
T Consensus         6 ~~k~vlVTGasg~~GIG~~ia~~l-~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~   84 (266)
T 3oig_A            6 EGRNIVVMGVANKRSIAWGIARSL-HEAGARLIFTYAGERLEKSVHELAGTLDRNDSIILPCDVTNDAEIETCFASIKEQ   84 (266)
T ss_dssp             TTCEEEEECCCSTTSHHHHHHHHH-HHTTCEEEEEESSGGGHHHHHHHHHTSSSCCCEEEECCCSSSHHHHHHHHHHHHH
T ss_pred             CCCEEEEEcCCCCCcHHHHHHHHH-HHCCCEEEEecCchHHHHHHHHHHHhcCCCCceEEeCCCCCHHHHHHHHHHHHHH
Confidence            5789999999954  999877777 4479999999988765444433    232  122  233342344443333321 


Q ss_pred             CCcccEEEECCCC
Q psy1959         230 GKYANVVFEAVGG  242 (296)
Q Consensus       230 ~~g~d~vld~~g~  242 (296)
                      ...+|+++++.|.
T Consensus        85 ~g~id~li~~Ag~   97 (266)
T 3oig_A           85 VGVIHGIAHCIAF   97 (266)
T ss_dssp             HSCCCEEEECCCC
T ss_pred             hCCeeEEEEcccc
Confidence            1268999999874

>3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, protein structure initiati nysgrc; 2.30A {Sinorhizobium meliloti}

Probab=96.60  E-value=0.0076  Score=52.12  Aligned_cols=81  Identities=17%  Similarity=0.197  Sum_probs=51.0

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCc-chHHH----HHhcCCcEEE---EcCCchhHHHHHHHHhC-CC
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSE-DKTDL----IRQKGAWAAL---TFTNEKSLVNKVLEVSG-GK  231 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~-~~~~~----~~~~g~~~~~---~~~~~~~~~~~i~~~~~-~~  231 (296)
                      .|++++|+|+++++|.+.++.+ ...|++|++++++. ++.+.    +++.+.....   +..+..+..+.+.+... -.
T Consensus        30 ~gk~~lVTGas~GIG~aia~~l-a~~G~~V~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g  108 (271)
T 3v2g_A           30 AGKTAFVTGGSRGIGAAIAKRL-ALEGAAVALTYVNAAERAQAVVSEIEQAGGRAVAIRADNRDAEAIEQAIRETVEALG  108 (271)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHH-HHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEeCCCcHHHHHHHHHH-HHCCCEEEEEeCCCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence            6789999999999999988777 45799999886543 43333    2334544332   23332333333333211 12


Q ss_pred             cccEEEECCCC
Q psy1959         232 YANVVFEAVGG  242 (296)
Q Consensus       232 g~d~vld~~g~  242 (296)
                      ++|+++++.|.
T Consensus       109 ~iD~lvnnAg~  119 (271)
T 3v2g_A          109 GLDILVNSAGI  119 (271)
T ss_dssp             CCCEEEECCCC
T ss_pred             CCcEEEECCCC
Confidence            69999999984

>1dhr_A Dihydropteridine reductase; oxidoreductase(acting on NADH or NADPH); HET: NAD; 2.30A {Rattus norvegicus} SCOP: c.2.1.2 PDB: 1dir_A* 1hdr_A*

Probab=96.60  E-value=0.0011  Score=56.18  Aligned_cols=77  Identities=22%  Similarity=0.223  Sum_probs=49.3

Q ss_pred             CCCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCcEE--EEcCCchhHHHHHHHH---hCCCccc
Q psy1959         160 KEKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAA--LTFTNEKSLVNKVLEV---SGGKYAN  234 (296)
Q Consensus       160 ~~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~~~--~~~~~~~~~~~~i~~~---~~~~g~d  234 (296)
                      ..+++++|+|++|++|.++++.+ ...|++|+++++++++..     +....  .+..+..+..+.+.+.   .+..++|
T Consensus         5 ~~~k~vlVTGas~gIG~~ia~~l-~~~G~~V~~~~r~~~~~~-----~~~~~~~~D~~~~~~v~~~~~~~~~~~~~g~iD   78 (241)
T 1dhr_A            5 GEARRVLVYGGRGALGSRCVQAF-RARNWWVASIDVVENEEA-----SASVIVKMTDSFTEQADQVTAEVGKLLGDQKVD   78 (241)
T ss_dssp             -CCCEEEEETTTSHHHHHHHHHH-HTTTCEEEEEESSCCTTS-----SEEEECCCCSCHHHHHHHHHHHHHHHHTTCCEE
T ss_pred             CCCCEEEEECCCcHHHHHHHHHH-HhCCCEEEEEeCChhhcc-----CCcEEEEcCCCCHHHHHHHHHHHHHHhCCCCCC
Confidence            46789999999999999988877 457999999999876542     11111  1222212222223222   2213799


Q ss_pred             EEEECCCC
Q psy1959         235 VVFEAVGG  242 (296)
Q Consensus       235 ~vld~~g~  242 (296)
                      +++++.|.
T Consensus        79 ~lv~~Ag~   86 (241)
T 1dhr_A           79 AILCVAGG   86 (241)
T ss_dssp             EEEECCCC
T ss_pred             EEEEcccc
Confidence            99999983

>1xu9_A Corticosteroid 11-beta-dehydrogenase, isozyme 1; hydroxysteroid, SDR, oxidoreductase; HET: NDP CPS MES; 1.55A {Homo sapiens} SCOP: c.2.1.2 PDB: 1xu7_A* 3bzu_A* 3czr_A* 3d3e_A* 3d4n_A* 3fco_A* 3frj_A* 3h6k_A* 3hfg_A* 3oq1_A* 3qqp_A* 3pdj_A* 3d5q_A* 2rbe_A* 3byz_A* 3ey4_A* 3tfq_A* 3ch6_A* 2irw_A* 2ilt_A* ...

Probab=96.59  E-value=0.0049  Score=53.57  Aligned_cols=80  Identities=18%  Similarity=0.133  Sum_probs=51.7

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHH----hcCCcEE----EEcCCchhHHHHHHHHhC-CC
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIR----QKGAWAA----LTFTNEKSLVNKVLEVSG-GK  231 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~----~~g~~~~----~~~~~~~~~~~~i~~~~~-~~  231 (296)
                      ++++++|+|++|++|.++++.+ ...|++|+++++++++.+.+.    +.+...+    .+..+..+..+.+.+... ..
T Consensus        27 ~~k~vlITGasggIG~~la~~l-~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~~g  105 (286)
T 1xu9_A           27 QGKKVIVTGASKGIGREMAYHL-AKMGAHVVVTARSKETLQKVVSHCLELGAASAHYIAGTMEDMTFAEQFVAQAGKLMG  105 (286)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHH-HHTTCEEEEEESCHHHHHHHHHHHHHHTCSEEEEEECCTTCHHHHHHHHHHHHHHHT
T ss_pred             CCCEEEEeCCCcHHHHHHHHHH-HHCCCEEEEEECCHHHHHHHHHHHHHhCCCceEEEeCCCCCHHHHHHHHHHHHHHcC
Confidence            4789999999999999988877 457999999999988766543    2343222    223332233332222210 12


Q ss_pred             cccEEEEC-CC
Q psy1959         232 YANVVFEA-VG  241 (296)
Q Consensus       232 g~d~vld~-~g  241 (296)
                      ++|+++++ .|
T Consensus       106 ~iD~li~naag  116 (286)
T 1xu9_A          106 GLDMLILNHIT  116 (286)
T ss_dssp             SCSEEEECCCC
T ss_pred             CCCEEEECCcc
Confidence            79999998 45

>1qsg_A Enoyl-[acyl-carrier-protein] reductase; enoyl reductase, oxidoreductase; HET: GLC NAD TCL; 1.75A {Escherichia coli} SCOP: c.2.1.2 PDB: 1c14_A* 1i2z_A* 1i30_A* 1lx6_A* 1lxc_A* 1mfp_A* 2fhs_A 1qg6_A* 1dfg_A* 1dfh_A* 1d8a_A* 1dfi_A* 3pje_A* 3pjd_A* 3pjf_A*

Probab=96.59  E-value=0.011  Score=50.72  Aligned_cols=81  Identities=10%  Similarity=0.074  Sum_probs=52.5

Q ss_pred             CCcEEEEEcCC--CcHHHHHHHHHHHhCCCEEEEEeCCc---chHHHHHh-cCCcEE--EEcCCchhHHHHHHHHhCC-C
Q psy1959         161 EKQTVLVTAAG--GGLGLAAVDMATKIYKAKVIGVCNSE---DKTDLIRQ-KGAWAA--LTFTNEKSLVNKVLEVSGG-K  231 (296)
Q Consensus       161 ~g~~vlI~Ga~--g~vG~aa~~la~~~~g~~Vi~~~~~~---~~~~~~~~-~g~~~~--~~~~~~~~~~~~i~~~~~~-~  231 (296)
                      .+++++|+|++  |++|.++++.+ ...|++|+++++++   +..+.+.+ .+....  .+..+..+..+.+.+.... .
T Consensus         8 ~~k~vlVTGas~~~gIG~~ia~~l-~~~G~~V~~~~r~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g   86 (265)
T 1qsg_A            8 SGKRILVTGVASKLSIAYGIAQAM-HREGAELAFTYQNDKLKGRVEEFAAQLGSDIVLQCDVAEDASIDTMFAELGKVWP   86 (265)
T ss_dssp             TTCEEEECCCCSTTSHHHHHHHHH-HHTTCEEEEEESSTTTHHHHHHHHHHTTCCCEEECCTTCHHHHHHHHHHHHTTCS
T ss_pred             CCCEEEEECCCCCCCHHHHHHHHH-HHCCCEEEEEcCcHHHHHHHHHHHHhcCCcEEEEccCCCHHHHHHHHHHHHHHcC
Confidence            57899999998  99999988777 44799999999876   23333332 232222  2344423444444444322 3


Q ss_pred             cccEEEECCCC
Q psy1959         232 YANVVFEAVGG  242 (296)
Q Consensus       232 g~d~vld~~g~  242 (296)
                      ++|+++++.|.
T Consensus        87 ~iD~lv~~Ag~   97 (265)
T 1qsg_A           87 KFDGFVHSIGF   97 (265)
T ss_dssp             SEEEEEECCCC
T ss_pred             CCCEEEECCCC
Confidence            69999999984

>3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU SDR, fungi, oxidoreductase; HET: GOL; 1.48A {Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A* 3itd_A

Probab=96.58  E-value=0.006  Score=52.61  Aligned_cols=81  Identities=19%  Similarity=0.180  Sum_probs=51.1

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCC-cchHHH----HHhcCCcEEE---EcCCchhHHHHHHHHhC-CC
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNS-EDKTDL----IRQKGAWAAL---TFTNEKSLVNKVLEVSG-GK  231 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~-~~~~~~----~~~~g~~~~~---~~~~~~~~~~~i~~~~~-~~  231 (296)
                      .|++++|+|+++++|.++++.+ ...|++|+++++. +++.+.    +++.+.....   +..+..+..+.+.+... -.
T Consensus        17 ~~k~~lVTGas~gIG~aia~~l-~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g   95 (270)
T 3is3_A           17 DGKVALVTGSGRGIGAAVAVHL-GRLGAKVVVNYANSTKDAEKVVSEIKALGSDAIAIKADIRQVPEIVKLFDQAVAHFG   95 (270)
T ss_dssp             TTCEEEESCTTSHHHHHHHHHH-HHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEECCCchHHHHHHHHH-HHCCCEEEEEcCCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence            5789999999999999988777 4579999987754 333332    3344544332   33332333333333211 12


Q ss_pred             cccEEEECCCC
Q psy1959         232 YANVVFEAVGG  242 (296)
Q Consensus       232 g~d~vld~~g~  242 (296)
                      .+|+++++.|.
T Consensus        96 ~id~lvnnAg~  106 (270)
T 3is3_A           96 HLDIAVSNSGV  106 (270)
T ss_dssp             CCCEEECCCCC
T ss_pred             CCCEEEECCCC
Confidence            69999999884

>3ond_A Adenosylhomocysteinase; plant protein, enzyme-substrate complex, NAD cofactor, regul SAM-dependent methylation reactions; HET: NAD ADN; 1.17A {Lupinus luteus} PDB: 3one_A* 3onf_A*

Probab=96.57  E-value=0.0083  Score=56.30  Aligned_cols=92  Identities=17%  Similarity=0.142  Sum_probs=64.9

Q ss_pred             HHHHHcCC-CCCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCcEEEEcCCchhHHHHHHHHhCC
Q psy1959         152 VFSRHAKL-KEKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNKVLEVSGG  230 (296)
Q Consensus       152 ~l~~~~~~-~~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~  230 (296)
                      ++.+..+. -.|++++|+|+ |++|.++++.+ +..|++|+++++++.+...+...+.+. ...   .+       .  .
T Consensus       254 gi~r~tg~~L~GKtVvVtGa-GgIG~aiA~~L-aa~GA~Viv~D~~~~~a~~Aa~~g~dv-~~l---ee-------~--~  318 (488)
T 3ond_A          254 GLMRATDVMIAGKVAVVAGY-GDVGKGCAAAL-KQAGARVIVTEIDPICALQATMEGLQV-LTL---ED-------V--V  318 (488)
T ss_dssp             HHHHHHCCCCTTCEEEEECC-SHHHHHHHHHH-HHTTCEEEEECSCHHHHHHHHHTTCEE-CCG---GG-------T--T
T ss_pred             HHHHHcCCcccCCEEEEECC-CHHHHHHHHHH-HHCCCEEEEEcCCHHHHHHHHHhCCcc-CCH---HH-------H--H
Confidence            33344443 47999999997 79999999999 668999999999888887777777531 111   11       1  2


Q ss_pred             CcccEEEECCCC-ccHH-HHHHHhhccCceE
Q psy1959         231 KYANVVFEAVGG-EDKT-DLIRQKGAWAALT  259 (296)
Q Consensus       231 ~g~d~vld~~g~-~~~~-~~~~~lg~~~g~~  259 (296)
                      ..+|+++++.|. ..+. ..++.+ +.++.+
T Consensus       319 ~~aDvVi~atG~~~vl~~e~l~~m-k~gaiV  348 (488)
T 3ond_A          319 SEADIFVTTTGNKDIIMLDHMKKM-KNNAIV  348 (488)
T ss_dssp             TTCSEEEECSSCSCSBCHHHHTTS-CTTEEE
T ss_pred             HhcCEEEeCCCChhhhhHHHHHhc-CCCeEE
Confidence            368999999997 4443 477777 555544

>1ooe_A Dihydropteridine reductase; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics; HET: MES; 1.65A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=96.57  E-value=0.00081  Score=56.86  Aligned_cols=76  Identities=18%  Similarity=0.183  Sum_probs=48.3

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCcEEE--EcCCchhHHHHHHH---HhCCCcccE
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAAL--TFTNEKSLVNKVLE---VSGGKYANV  235 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~i~~---~~~~~g~d~  235 (296)
                      .+++++|+|++|++|.+.++.+ ...|++|+++++++++..     .....+  +..+..+..+.+.+   ..+..++|+
T Consensus         2 ~~k~vlITGas~gIG~~~a~~l-~~~G~~V~~~~r~~~~~~-----~~~~~~~~D~~~~~~~~~~~~~~~~~~~~g~id~   75 (236)
T 1ooe_A            2 SSGKVIVYGGKGALGSAILEFF-KKNGYTVLNIDLSANDQA-----DSNILVDGNKNWTEQEQSILEQTASSLQGSQVDG   75 (236)
T ss_dssp             CCEEEEEETTTSHHHHHHHHHH-HHTTEEEEEEESSCCTTS-----SEEEECCTTSCHHHHHHHHHHHHHHHHTTCCEEE
T ss_pred             CCCEEEEECCCcHHHHHHHHHH-HHCCCEEEEEecCccccc-----cccEEEeCCCCCHHHHHHHHHHHHHHhCCCCCCE
Confidence            3678999999999999988877 457999999999876542     111111  11111222222222   222137999


Q ss_pred             EEECCCC
Q psy1959         236 VFEAVGG  242 (296)
Q Consensus       236 vld~~g~  242 (296)
                      ++++.|.
T Consensus        76 lv~~Ag~   82 (236)
T 1ooe_A           76 VFCVAGG   82 (236)
T ss_dssp             EEECCCC
T ss_pred             EEECCcc
Confidence            9999983

>3ctm_A Carbonyl reductase; alcohol dehydrogenase, short-chain dehydrogenases/reductases (SDR), X-RAY crystallography, oxidoreductase; 2.69A {Candida parapsilosis}

Probab=96.57  E-value=0.0047  Score=53.35  Aligned_cols=81  Identities=19%  Similarity=0.193  Sum_probs=52.0

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHh----cCCcEE-E--EcCCchhHHHHHHHHhC-CCc
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQ----KGAWAA-L--TFTNEKSLVNKVLEVSG-GKY  232 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~----~g~~~~-~--~~~~~~~~~~~i~~~~~-~~g  232 (296)
                      .+++++|+|++|++|.+.+..+ ...|++|+++++++++.+.+.+    .+.... +  +..+..++.+.+.+... -..
T Consensus        33 ~~k~vlITGasggIG~~la~~L-~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~  111 (279)
T 3ctm_A           33 KGKVASVTGSSGGIGWAVAEAY-AQAGADVAIWYNSHPADEKAEHLQKTYGVHSKAYKCNISDPKSVEETISQQEKDFGT  111 (279)
T ss_dssp             TTCEEEETTTTSSHHHHHHHHH-HHHTCEEEEEESSSCCHHHHHHHHHHHCSCEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CCCEEEEECCCcHHHHHHHHHH-HHCCCEEEEEeCCHHHHHHHHHHHHhcCCcceEEEeecCCHHHHHHHHHHHHHHhCC
Confidence            5789999999999999988777 3469999999998776554432    243322 2  33332333333333211 125


Q ss_pred             ccEEEECCCC
Q psy1959         233 ANVVFEAVGG  242 (296)
Q Consensus       233 ~d~vld~~g~  242 (296)
                      +|+++++.|.
T Consensus       112 id~li~~Ag~  121 (279)
T 3ctm_A          112 IDVFVANAGV  121 (279)
T ss_dssp             CSEEEECGGG
T ss_pred             CCEEEECCcc
Confidence            9999998873

>2bd0_A Sepiapterin reductase; oxidoreductase; HET: NAP BIO; 1.70A {Chlorobium tepidum} SCOP: c.2.1.2

Probab=96.56  E-value=0.0065  Score=51.22  Aligned_cols=80  Identities=15%  Similarity=0.152  Sum_probs=51.7

Q ss_pred             CcEEEEEcCCCcHHHHHHHHHHHhCCC-------EEEEEeCCcchHHHHHh----cCCcEE---EEcCCchhHHHHHHHH
Q psy1959         162 KQTVLVTAAGGGLGLAAVDMATKIYKA-------KVIGVCNSEDKTDLIRQ----KGAWAA---LTFTNEKSLVNKVLEV  227 (296)
Q Consensus       162 g~~vlI~Ga~g~vG~aa~~la~~~~g~-------~Vi~~~~~~~~~~~~~~----~g~~~~---~~~~~~~~~~~~i~~~  227 (296)
                      +++++|+|++|++|.+.++.+ ...|+       +|+++++++++.+.+.+    .+....   .+..+..++.+.+.+.
T Consensus         2 ~k~vlITGasggiG~~la~~l-~~~G~~~~~~~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~   80 (244)
T 2bd0_A            2 KHILLITGAGKGIGRAIALEF-ARAARHHPDFEPVLVLSSRTAADLEKISLECRAEGALTDTITADISDMADVRRLTTHI   80 (244)
T ss_dssp             CEEEEEETTTSHHHHHHHHHH-HHHTTTCTTCCEEEEEEESCHHHHHHHHHHHHTTTCEEEEEECCTTSHHHHHHHHHHH
T ss_pred             CCEEEEECCCChHHHHHHHHH-HHhcCcccccceEEEEEeCCHHHHHHHHHHHHccCCeeeEEEecCCCHHHHHHHHHHH
Confidence            578999999999999987766 34688       99999998877665432    243222   2233323333333332


Q ss_pred             hC-CCcccEEEECCCC
Q psy1959         228 SG-GKYANVVFEAVGG  242 (296)
Q Consensus       228 ~~-~~g~d~vld~~g~  242 (296)
                      .. ..++|+++++.|.
T Consensus        81 ~~~~g~id~li~~Ag~   96 (244)
T 2bd0_A           81 VERYGHIDCLVNNAGV   96 (244)
T ss_dssp             HHHTSCCSEEEECCCC
T ss_pred             HHhCCCCCEEEEcCCc
Confidence            21 1369999999884

>2x9g_A PTR1, pteridine reductase; short chain dehydrogenase, oxidoreductase; HET: NAP LYA; 1.10A {Trypanosoma brucei brucei} PDB: 2x9n_A* 2x9v_A* 3bmc_A* 3bmd_A* 3bme_A* 3bmf_A* 3bmg_A* 3bmh_A* 3bmi_A* 3bmj_A* 3bmk_A* 3bml_A* 3bmm_A* 3bmn_A* 3bmo_A* 3bmq_A* 3bmr_A* 3gn1_A* 3gn2_A* 3jq6_A* ...

Probab=96.56  E-value=0.012  Score=51.13  Aligned_cols=81  Identities=15%  Similarity=0.083  Sum_probs=51.6

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCc-chHHHHH-----hcCCcEE---EEcCC----chhHHHHHHHH
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSE-DKTDLIR-----QKGAWAA---LTFTN----EKSLVNKVLEV  227 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~-~~~~~~~-----~~g~~~~---~~~~~----~~~~~~~i~~~  227 (296)
                      .+++++|+|++|++|.++++.+ ...|++|+++++++ ++.+.+.     +.+....   .+..+    ..+..+.+.+.
T Consensus        22 ~~k~~lVTGas~gIG~aia~~L-~~~G~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~~Dv~~~~~~~~~v~~~~~~~  100 (288)
T 2x9g_A           22 EAPAAVVTGAAKRIGRAIAVKL-HQTGYRVVIHYHNSAEAAVSLADELNKERSNTAVVCQADLTNSNVLPASCEEIINSC  100 (288)
T ss_dssp             CCCEEEETTCSSHHHHHHHHHH-HHHTCEEEEEESSCHHHHHHHHHHHHHHSTTCEEEEECCCSCSTTHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHH-HHCCCeEEEEeCCchHHHHHHHHHHHhhcCCceEEEEeecCCccCCHHHHHHHHHHH
Confidence            5789999999999999988777 34699999999987 6554332     2343322   22222    22333333322


Q ss_pred             hC-CCcccEEEECCCC
Q psy1959         228 SG-GKYANVVFEAVGG  242 (296)
Q Consensus       228 ~~-~~g~d~vld~~g~  242 (296)
                      .. ..++|++|++.|.
T Consensus       101 ~~~~g~iD~lvnnAG~  116 (288)
T 2x9g_A          101 FRAFGRCDVLVNNASA  116 (288)
T ss_dssp             HHHHSCCCEEEECCCC
T ss_pred             HHhcCCCCEEEECCCC
Confidence            11 1269999999984

>4iin_A 3-ketoacyl-acyl carrier protein reductase (FABG); structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.40A {Helicobacter pylori} PDB: 4ijk_A

Probab=96.56  E-value=0.0064  Score=52.43  Aligned_cols=81  Identities=20%  Similarity=0.232  Sum_probs=51.7

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCC-cchHHHH----HhcCCcEEE---EcCCchhHHHHHHHHhC-CC
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNS-EDKTDLI----RQKGAWAAL---TFTNEKSLVNKVLEVSG-GK  231 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~-~~~~~~~----~~~g~~~~~---~~~~~~~~~~~i~~~~~-~~  231 (296)
                      .+++++|+|++|++|.++++.+ ...|++|++++++ +++.+.+    ++.+....+   +..+..+..+.+.+... ..
T Consensus        28 ~~k~vlITGas~gIG~~la~~l-~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g  106 (271)
T 4iin_A           28 TGKNVLITGASKGIGAEIAKTL-ASMGLKVWINYRSNAEVADALKNELEEKGYKAAVIKFDAASESDFIEAIQTIVQSDG  106 (271)
T ss_dssp             SCCEEEETTCSSHHHHHHHHHH-HHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEECCCcHHHHHHHHHH-HHCCCEEEEEeCCCHHHHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHhcC
Confidence            5789999999999999977777 4579999999984 3333333    334443322   23332333333333211 12


Q ss_pred             cccEEEECCCC
Q psy1959         232 YANVVFEAVGG  242 (296)
Q Consensus       232 g~d~vld~~g~  242 (296)
                      ++|+++++.|.
T Consensus       107 ~id~li~nAg~  117 (271)
T 4iin_A          107 GLSYLVNNAGV  117 (271)
T ss_dssp             SCCEEEECCCC
T ss_pred             CCCEEEECCCc
Confidence            79999999984

>4dmm_A 3-oxoacyl-[acyl-carrier-protein] reductase; rossmann fold, oxoacyl-ACP reductase, NADP binding, fatty AC biosynthsis, oxidoreductase; HET: NAP; 2.38A {Synechococcus elongatus} PDB: 4dml_A*

Probab=96.55  E-value=0.0059  Score=52.73  Aligned_cols=81  Identities=22%  Similarity=0.138  Sum_probs=51.4

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeC-CcchHHHH----HhcCCcEEE---EcCCchhHHHHHHHHhC-CC
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCN-SEDKTDLI----RQKGAWAAL---TFTNEKSLVNKVLEVSG-GK  231 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~-~~~~~~~~----~~~g~~~~~---~~~~~~~~~~~i~~~~~-~~  231 (296)
                      .+++++|+|+++++|.++++.+ ...|++|+++++ ++++.+.+    ++.+.....   +..+..+..+.+.+... -.
T Consensus        27 ~~k~vlVTGas~gIG~aia~~l-a~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~v~~~~~~~~~~~g  105 (269)
T 4dmm_A           27 TDRIALVTGASRGIGRAIALEL-AAAGAKVAVNYASSAGAADEVVAAIAAAGGEAFAVKADVSQESEVEALFAAVIERWG  105 (269)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHH-HHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEECCCCHHHHHHHHHH-HHCCCEEEEEeCCChHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence            5789999999999999987777 457999999887 44444433    333443322   33332333333332211 12


Q ss_pred             cccEEEECCCC
Q psy1959         232 YANVVFEAVGG  242 (296)
Q Consensus       232 g~d~vld~~g~  242 (296)
                      .+|+++++.|.
T Consensus       106 ~id~lv~nAg~  116 (269)
T 4dmm_A          106 RLDVLVNNAGI  116 (269)
T ss_dssp             CCCEEEECCCC
T ss_pred             CCCEEEECCCC
Confidence            69999999884

>1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted open sheet structure, oxidoreductase; 1.90A {Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4 PDB: 1lua_A*

Probab=96.55  E-value=0.016  Score=50.59  Aligned_cols=75  Identities=19%  Similarity=0.116  Sum_probs=51.8

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHh-c----CCc-EEEEcCCchhHHHHHHHHhCCCccc
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQ-K----GAW-AALTFTNEKSLVNKVLEVSGGKYAN  234 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~-~----g~~-~~~~~~~~~~~~~~i~~~~~~~g~d  234 (296)
                      +|++++|+|++|++|.+++..+ ...|++|++++++.++.+.+.+ +    +.. ...+..+ .   +.+.+...  .+|
T Consensus       118 ~gk~vlVtGaaGGiG~aia~~L-~~~G~~V~i~~R~~~~~~~l~~~~~~~~~~~~~~~D~~~-~---~~~~~~~~--~~D  190 (287)
T 1lu9_A          118 KGKKAVVLAGTGPVGMRSAALL-AGEGAEVVLCGRKLDKAQAAADSVNKRFKVNVTAAETAD-D---ASRAEAVK--GAH  190 (287)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHH-HHTTCEEEEEESSHHHHHHHHHHHHHHHTCCCEEEECCS-H---HHHHHHTT--TCS
T ss_pred             CCCEEEEECCCcHHHHHHHHHH-HHCcCEEEEEECCHHHHHHHHHHHHhcCCcEEEEecCCC-H---HHHHHHHH--hCC
Confidence            6889999998899999988877 4579999999998777664432 2    222 2234433 1   23334332  489


Q ss_pred             EEEECCCC
Q psy1959         235 VVFEAVGG  242 (296)
Q Consensus       235 ~vld~~g~  242 (296)
                      +++++.|.
T Consensus       191 vlVn~ag~  198 (287)
T 1lu9_A          191 FVFTAGAI  198 (287)
T ss_dssp             EEEECCCT
T ss_pred             EEEECCCc
Confidence            99999973

>1oaa_A Sepiapterin reductase; tetrahydrobiopterin, oxidoreductase; HET: NAP; 1.25A {Mus musculus} SCOP: c.2.1.2 PDB: 1nas_A* 1sep_A* 1z6z_A*

Probab=96.54  E-value=0.01  Score=50.61  Aligned_cols=82  Identities=11%  Similarity=0.103  Sum_probs=53.4

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHh--CCCEEEEEeCCcchHHHHHh-c-----CCcEE---EEcCCchhHHHHHHHHhC
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKI--YKAKVIGVCNSEDKTDLIRQ-K-----GAWAA---LTFTNEKSLVNKVLEVSG  229 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~--~g~~Vi~~~~~~~~~~~~~~-~-----g~~~~---~~~~~~~~~~~~i~~~~~  229 (296)
                      .+++++|+|++|++|.++++.+.+.  .|++|+++++++++.+.+.+ +     +....   .+..+..+..+.+.+...
T Consensus         5 ~~k~~lVTGas~gIG~~ia~~l~~~~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~   84 (259)
T 1oaa_A            5 GCAVCVLTGASRGFGRALAPQLARLLSPGSVMLVSARSESMLRQLKEELGAQQPDLKVVLAAADLGTEAGVQRLLSAVRE   84 (259)
T ss_dssp             BSEEEEESSCSSHHHHHHHHHHHTTBCTTCEEEEEESCHHHHHHHHHHHHHHCTTSEEEEEECCTTSHHHHHHHHHHHHH
T ss_pred             CCcEEEEeCCCChHHHHHHHHHHHhhcCCCeEEEEeCCHHHHHHHHHHHHhhCCCCeEEEEecCCCCHHHHHHHHHHHHh
Confidence            4688999999999999988777231  69999999998877655432 2     33222   233332344444444322


Q ss_pred             ---CCccc--EEEECCCC
Q psy1959         230 ---GKYAN--VVFEAVGG  242 (296)
Q Consensus       230 ---~~g~d--~vld~~g~  242 (296)
                         ...+|  +++++.|.
T Consensus        85 ~~~~g~~d~~~lvnnAg~  102 (259)
T 1oaa_A           85 LPRPEGLQRLLLINNAAT  102 (259)
T ss_dssp             SCCCTTCCEEEEEECCCC
T ss_pred             ccccccCCccEEEECCcc
Confidence               23577  99999874

>3rku_A Oxidoreductase YMR226C; substrate fingerprint, short chain oxidoreductase, rossmann oxidoreductase; HET: NAP; 2.60A {Saccharomyces cerevisiae}

Probab=96.53  E-value=0.0046  Score=54.04  Aligned_cols=81  Identities=21%  Similarity=0.247  Sum_probs=53.6

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCC---EEEEEeCCcchHHHHHhc------CCcEE---EEcCCchhHHHHHHHHh
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKA---KVIGVCNSEDKTDLIRQK------GAWAA---LTFTNEKSLVNKVLEVS  228 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~---~Vi~~~~~~~~~~~~~~~------g~~~~---~~~~~~~~~~~~i~~~~  228 (296)
                      .+++++|+|+++++|.++++.+.+ .|+   +|+++++++++.+.+.+.      +....   .+..+..+..+.+.+..
T Consensus        32 ~~k~~lVTGas~GIG~aia~~l~~-~G~~~~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~  110 (287)
T 3rku_A           32 AKKTVLITGASAGIGKATALEYLE-ASNGDMKLILAARRLEKLEELKKTIDQEFPNAKVHVAQLDITQAEKIKPFIENLP  110 (287)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHH-HHTTCSEEEEEESCHHHHHHHHHHHHHHCTTCEEEEEECCTTCGGGHHHHHHTSC
T ss_pred             CCCEEEEecCCChHHHHHHHHHHH-cCCCCceEEEEECCHHHHHHHHHHHHhhCCCCeEEEEECCCCCHHHHHHHHHHHH
Confidence            578999999999999997765523 466   999999998877655431      33222   23344344444444432


Q ss_pred             C-CCcccEEEECCCC
Q psy1959         229 G-GKYANVVFEAVGG  242 (296)
Q Consensus       229 ~-~~g~d~vld~~g~  242 (296)
                      . -..+|+++++.|.
T Consensus       111 ~~~g~iD~lVnnAG~  125 (287)
T 3rku_A          111 QEFKDIDILVNNAGK  125 (287)
T ss_dssp             GGGCSCCEEEECCCC
T ss_pred             HhcCCCCEEEECCCc
Confidence            1 1269999999984

>3u9l_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.10A {Sinorhizobium meliloti}

Probab=96.53  E-value=0.0058  Score=54.41  Aligned_cols=80  Identities=16%  Similarity=0.240  Sum_probs=50.3

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCC-----cchHHHHH----hcCCcEE---EEcCCchhHHHHHHHHh
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNS-----EDKTDLIR----QKGAWAA---LTFTNEKSLVNKVLEVS  228 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~-----~~~~~~~~----~~g~~~~---~~~~~~~~~~~~i~~~~  228 (296)
                      .+++++|+|++|++|.++++.+ ...|++|++++++     +++.+.+.    +.+....   .+..+..++.+.+.+..
T Consensus         4 ~~k~vlVTGas~GIG~aia~~L-~~~G~~V~~~~r~~~~r~~~~~~~l~~~~~~~~~~~~~~~~Dvtd~~~v~~~~~~~~   82 (324)
T 3u9l_A            4 SKKIILITGASSGFGRLTAEAL-AGAGHRVYASMRDIVGRNASNVEAIAGFARDNDVDLRTLELDVQSQVSVDRAIDQII   82 (324)
T ss_dssp             -CCEEEESSCSSHHHHHHHHHH-HHTTCEEEEEESCTTTTTHHHHHHHHHHHHHHTCCEEEEECCTTCHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHH-HHCCCEEEEecCcccccCHHHHHHHHHHHHhcCCcEEEEEeecCCHHHHHHHHHHHH
Confidence            3678999999999999988877 4579999988765     23333332    2343322   23333233433343332


Q ss_pred             C-CCcccEEEECCC
Q psy1959         229 G-GKYANVVFEAVG  241 (296)
Q Consensus       229 ~-~~g~d~vld~~g  241 (296)
                      . ..++|+++++.|
T Consensus        83 ~~~g~iD~lVnnAG   96 (324)
T 3u9l_A           83 GEDGRIDVLIHNAG   96 (324)
T ss_dssp             HHHSCCSEEEECCC
T ss_pred             HHcCCCCEEEECCC
Confidence            1 127999999998

>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes}

Probab=96.53  E-value=0.0072  Score=49.81  Aligned_cols=69  Identities=20%  Similarity=0.149  Sum_probs=49.3

Q ss_pred             EEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCcEE-EEcCCchhHHHHHHHHhCCCcccEEEECCCC
Q psy1959         164 TVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAA-LTFTNEKSLVNKVLEVSGGKYANVVFEAVGG  242 (296)
Q Consensus       164 ~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~i~~~~~~~g~d~vld~~g~  242 (296)
                      +|+|+|++|.+|..+++.+ ...|.+|+++++++++.+.+. .+...+ .+..+ .+.     +..  .++|++|.+.|.
T Consensus         2 kvlVtGatG~iG~~l~~~L-~~~g~~V~~~~R~~~~~~~~~-~~~~~~~~D~~d-~~~-----~~~--~~~d~vi~~ag~   71 (221)
T 3ew7_A            2 KIGIIGATGRAGSRILEEA-KNRGHEVTAIVRNAGKITQTH-KDINILQKDIFD-LTL-----SDL--SDQNVVVDAYGI   71 (221)
T ss_dssp             EEEEETTTSHHHHHHHHHH-HHTTCEEEEEESCSHHHHHHC-SSSEEEECCGGG-CCH-----HHH--TTCSEEEECCCS
T ss_pred             eEEEEcCCchhHHHHHHHH-HhCCCEEEEEEcCchhhhhcc-CCCeEEeccccC-hhh-----hhh--cCCCEEEECCcC
Confidence            6899999999999999888 457999999999988776654 333222 22222 111     222  378999999986

>2nwq_A Probable short-chain dehydrogenase; oxidoreductase; 2.30A {Pseudomonas aeruginosa}

Probab=96.53  E-value=0.0034  Score=54.39  Aligned_cols=79  Identities=14%  Similarity=0.107  Sum_probs=52.1

Q ss_pred             cEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHh-cCC--c-EE--EEcCCchhHHHHHHHHhC-CCcccE
Q psy1959         163 QTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQ-KGA--W-AA--LTFTNEKSLVNKVLEVSG-GKYANV  235 (296)
Q Consensus       163 ~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~-~g~--~-~~--~~~~~~~~~~~~i~~~~~-~~g~d~  235 (296)
                      ++++|+|++|++|.++++.+ ...|++|+++++++++.+.+.+ +..  . ..  .+..+..+..+.+.+... -..+|+
T Consensus        22 k~vlVTGas~gIG~aia~~L-a~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~  100 (272)
T 2nwq_A           22 STLFITGATSGFGEACARRF-AEAGWSLVLTGRREERLQALAGELSAKTRVLPLTLDVRDRAAMSAAVDNLPEEFATLRG  100 (272)
T ss_dssp             CEEEESSTTTSSHHHHHHHH-HHTTCEEEEEESCHHHHHHHHHHHTTTSCEEEEECCTTCHHHHHHHHHTCCGGGSSCCE
T ss_pred             cEEEEeCCCCHHHHHHHHHH-HHCCCEEEEEECCHHHHHHHHHHhhcCCcEEEEEcCCCCHHHHHHHHHHHHHHhCCCCE
Confidence            78999999999999988777 4579999999999887765543 221  1 12  233332333333333211 126899


Q ss_pred             EEECCCC
Q psy1959         236 VFEAVGG  242 (296)
Q Consensus       236 vld~~g~  242 (296)
                      ++++.|.
T Consensus       101 lvnnAG~  107 (272)
T 2nwq_A          101 LINNAGL  107 (272)
T ss_dssp             EEECCCC
T ss_pred             EEECCCC
Confidence            9999874

>2pd4_A Enoyl-[acyl-carrier-protein] reductase [NADH]; antibacterial target, type II fatty acid biosynthesis, enoyl-ACP-reductase, FABI; HET: NAD DCN; 2.30A {Helicobacter pylori} SCOP: c.2.1.2 PDB: 2pd3_A*

Probab=96.52  E-value=0.012  Score=50.73  Aligned_cols=81  Identities=11%  Similarity=0.019  Sum_probs=52.2

Q ss_pred             CCcEEEEEcCC--CcHHHHHHHHHHHhCCCEEEEEeCCcc---hHHHHHh-cCCcEE--EEcCCchhHHHHHHHHhC-CC
Q psy1959         161 EKQTVLVTAAG--GGLGLAAVDMATKIYKAKVIGVCNSED---KTDLIRQ-KGAWAA--LTFTNEKSLVNKVLEVSG-GK  231 (296)
Q Consensus       161 ~g~~vlI~Ga~--g~vG~aa~~la~~~~g~~Vi~~~~~~~---~~~~~~~-~g~~~~--~~~~~~~~~~~~i~~~~~-~~  231 (296)
                      .+++++|+|++  |++|.++++.+ ...|++|++++++++   ..+.+.+ .+....  .+..+..+..+.+.+... -.
T Consensus         5 ~~k~vlVTGas~~~gIG~~~a~~l-~~~G~~V~~~~r~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g   83 (275)
T 2pd4_A            5 KGKKGLIVGVANNKSIAYGIAQSC-FNQGATLAFTYLNESLEKRVRPIAQELNSPYVYELDVSKEEHFKSLYNSVKKDLG   83 (275)
T ss_dssp             TTCEEEEECCCSTTSHHHHHHHHH-HTTTCEEEEEESSTTTHHHHHHHHHHTTCCCEEECCTTCHHHHHHHHHHHHHHTS
T ss_pred             CCCEEEEECCCCCCcHHHHHHHHH-HHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence            47899999998  99999988877 457999999998875   3333333 232222  233442333333333211 13


Q ss_pred             cccEEEECCCC
Q psy1959         232 YANVVFEAVGG  242 (296)
Q Consensus       232 g~d~vld~~g~  242 (296)
                      .+|+++++.|.
T Consensus        84 ~id~lv~nAg~   94 (275)
T 2pd4_A           84 SLDFIVHSVAF   94 (275)
T ss_dssp             CEEEEEECCCC
T ss_pred             CCCEEEECCcc
Confidence            69999999984

>2ph3_A 3-oxoacyl-[acyl carrier protein] reductase; TTHA0415, structural genomics, southea collaboratory for structural genomics, secsg; 1.91A {Thermus thermophilus HB8}

Probab=96.52  E-value=0.0066  Score=51.11  Aligned_cols=80  Identities=15%  Similarity=0.116  Sum_probs=50.6

Q ss_pred             CcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEE-eCCcchHHHHH----hcCCcE-E-E--EcCCchhHHHHHHHHhC-CC
Q psy1959         162 KQTVLVTAAGGGLGLAAVDMATKIYKAKVIGV-CNSEDKTDLIR----QKGAWA-A-L--TFTNEKSLVNKVLEVSG-GK  231 (296)
Q Consensus       162 g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~-~~~~~~~~~~~----~~g~~~-~-~--~~~~~~~~~~~i~~~~~-~~  231 (296)
                      +++++|+|++|++|.++++.+ ...|++|+++ ++++++.+.+.    +.+... . +  +..+..+..+.+.+... -.
T Consensus         1 ~k~vlITGasggiG~~~a~~l-~~~G~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~   79 (245)
T 2ph3_A            1 MRKALITGASRGIGRAIALRL-AEDGFALAIHYGQNREKAEEVAEEARRRGSPLVAVLGANLLEAEAATALVHQAAEVLG   79 (245)
T ss_dssp             CCEEEETTTTSHHHHHHHHHH-HTTTCEEEEEESSCHHHHHHHHHHHHHTTCSCEEEEECCTTSHHHHHHHHHHHHHHHT
T ss_pred             CCEEEEeCCCchHHHHHHHHH-HHCCCEEEEEcCCCHHHHHHHHHHHHhcCCceEEEEeccCCCHHHHHHHHHHHHHhcC
Confidence            368999999999999988877 4579999998 77776655432    234322 2 2  33332333333332211 12


Q ss_pred             cccEEEECCCC
Q psy1959         232 YANVVFEAVGG  242 (296)
Q Consensus       232 g~d~vld~~g~  242 (296)
                      ++|+++++.|.
T Consensus        80 ~~d~li~~Ag~   90 (245)
T 2ph3_A           80 GLDTLVNNAGI   90 (245)
T ss_dssp             CCCEEEECCCC
T ss_pred             CCCEEEECCCC
Confidence            69999999884

>3enk_A UDP-glucose 4-epimerase; seattle structural genomics center for infectious disease, ssgcid, isomerase, NAD; HET: NAD GUD; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0

Probab=96.51  E-value=0.0089  Score=52.90  Aligned_cols=77  Identities=17%  Similarity=0.068  Sum_probs=49.4

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHH----Hhc-CCc-EEE--EcCCchhHHHHHHHHhCCCc
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLI----RQK-GAW-AAL--TFTNEKSLVNKVLEVSGGKY  232 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~----~~~-g~~-~~~--~~~~~~~~~~~i~~~~~~~g  232 (296)
                      .+.+|+|+|++|.+|..+++.+ ...|++|++++++.++....    .+. +.. ..+  +..+...+.+.+.+    .+
T Consensus         4 ~~~~vlVTGatG~iG~~l~~~L-~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~----~~   78 (341)
T 3enk_A            4 TKGTILVTGGAGYIGSHTAVEL-LAHGYDVVIADNLVNSKREAIARIEKITGKTPAFHETDVSDERALARIFDA----HP   78 (341)
T ss_dssp             SSCEEEEETTTSHHHHHHHHHH-HHTTCEEEEECCCSSSCTHHHHHHHHHHSCCCEEECCCTTCHHHHHHHHHH----SC
T ss_pred             CCcEEEEecCCcHHHHHHHHHH-HHCCCcEEEEecCCcchHHHHHHHHhhcCCCceEEEeecCCHHHHHHHHhc----cC
Confidence            4679999999999999988887 45799999999866543222    111 222 222  23331222222222    37


Q ss_pred             ccEEEECCCC
Q psy1959         233 ANVVFEAVGG  242 (296)
Q Consensus       233 ~d~vld~~g~  242 (296)
                      +|+++++.+.
T Consensus        79 ~d~vih~A~~   88 (341)
T 3enk_A           79 ITAAIHFAAL   88 (341)
T ss_dssp             CCEEEECCCC
T ss_pred             CcEEEECccc
Confidence            9999999985

>3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp}

Probab=96.51  E-value=0.0044  Score=51.44  Aligned_cols=72  Identities=7%  Similarity=0.135  Sum_probs=50.1

Q ss_pred             EEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCcEEEEcCCchhHHHHHHHHhCCCcccEEEECCCC
Q psy1959         164 TVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNKVLEVSGGKYANVVFEAVGG  242 (296)
Q Consensus       164 ~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~g~d~vld~~g~  242 (296)
                      +|+|+|++|.+|..+++.+ ...|.+|+++++++++.+.+  .+. ..+..+- .+..+.+.+...  ++|++|.+.|.
T Consensus         2 ~ilItGatG~iG~~l~~~L-~~~g~~V~~~~R~~~~~~~~--~~~-~~~~~D~-~d~~~~~~~~~~--~~d~vi~~ag~   73 (219)
T 3dqp_A            2 KIFIVGSTGRVGKSLLKSL-STTDYQIYAGARKVEQVPQY--NNV-KAVHFDV-DWTPEEMAKQLH--GMDAIINVSGS   73 (219)
T ss_dssp             EEEEESTTSHHHHHHHHHH-TTSSCEEEEEESSGGGSCCC--TTE-EEEECCT-TSCHHHHHTTTT--TCSEEEECCCC
T ss_pred             eEEEECCCCHHHHHHHHHH-HHCCCEEEEEECCccchhhc--CCc-eEEEecc-cCCHHHHHHHHc--CCCEEEECCcC
Confidence            6899999999999999888 55799999999988765432  122 2222221 221345555543  79999999985

>1ja9_A 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, oxidoreductase, chain dehydrogenase; HET: NDP PYQ; 1.50A {Magnaporthe grisea} SCOP: c.2.1.2

Probab=96.49  E-value=0.0058  Score=52.38  Aligned_cols=81  Identities=17%  Similarity=0.140  Sum_probs=52.0

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeC-CcchHHHH----HhcCCcEE---EEcCCchhHHHHHHHHhC-CC
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCN-SEDKTDLI----RQKGAWAA---LTFTNEKSLVNKVLEVSG-GK  231 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~-~~~~~~~~----~~~g~~~~---~~~~~~~~~~~~i~~~~~-~~  231 (296)
                      ++++++|+|++|++|.+.++.+ ...|++|+++++ ++++.+.+    ++.+....   .+..+..++.+.+.+... -.
T Consensus        20 ~~k~vlItGasggiG~~la~~l-~~~G~~v~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~   98 (274)
T 1ja9_A           20 AGKVALTTGAGRGIGRGIAIEL-GRRGASVVVNYGSSSKAAEEVVAELKKLGAQGVAIQADISKPSEVVALFDKAVSHFG   98 (274)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHH-HHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEeCCCchHHHHHHHHH-HHCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHHcC
Confidence            5789999999999999988877 447999999998 66555433    33354332   233332333333332211 12


Q ss_pred             cccEEEECCCC
Q psy1959         232 YANVVFEAVGG  242 (296)
Q Consensus       232 g~d~vld~~g~  242 (296)
                      ++|+++++.|.
T Consensus        99 ~~d~vi~~Ag~  109 (274)
T 1ja9_A           99 GLDFVMSNSGM  109 (274)
T ss_dssp             CEEEEECCCCC
T ss_pred             CCCEEEECCCC
Confidence            69999999884

>2h7i_A Enoyl-[acyl-carrier-protein] reductase [NADH]; oxidoreductase, INHA, enoyl acyl carrier reductase, pyrrolid carboxamide; HET: NAD 566; 1.62A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1p44_A* 1p45_A* 2b35_A* 2b36_A* 2b37_A* 2aq8_A* 2h7l_A* 2h7m_A* 2h7n_A* 2h7p_A* 2nsd_A* 2pr2_A* 2x22_A* 2x23_A* 3fne_A* 3fnf_A* 3fng_A* 3fnh_A* 3oew_A* 2aqh_A* ...

Probab=96.49  E-value=0.0044  Score=53.40  Aligned_cols=81  Identities=19%  Similarity=0.197  Sum_probs=52.6

Q ss_pred             CCcEEEEEcC--CCcHHHHHHHHHHHhCCCEEEEEeCCcch-HHHHH-hcCCc--E-EEEcCCchhHHHHHHHH---hC-
Q psy1959         161 EKQTVLVTAA--GGGLGLAAVDMATKIYKAKVIGVCNSEDK-TDLIR-QKGAW--A-ALTFTNEKSLVNKVLEV---SG-  229 (296)
Q Consensus       161 ~g~~vlI~Ga--~g~vG~aa~~la~~~~g~~Vi~~~~~~~~-~~~~~-~~g~~--~-~~~~~~~~~~~~~i~~~---~~-  229 (296)
                      .+++++|+|+  ++++|.++++.+ ...|++|+++++++++ .+.+. +++..  . ..+..+..+..+.+.+.   .+ 
T Consensus         6 ~~k~vlVTGa~~s~gIG~aia~~l-~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~   84 (269)
T 2h7i_A            6 DGKRILVSGIITDSSIAFHIARVA-QEQGAQLVLTGFDRLRLIQRITDRLPAKAPLLELDVQNEEHLASLAGRVTEAIGA   84 (269)
T ss_dssp             TTCEEEECCCSSTTSHHHHHHHHH-HHTTCEEEEEECSCHHHHHHHHTTSSSCCCEEECCTTCHHHHHHHHHHHHHHHCT
T ss_pred             CCCEEEEECCCCCCchHHHHHHHH-HHCCCEEEEEecChHHHHHHHHHhcCCCceEEEccCCCHHHHHHHHHHHHHHhCC
Confidence            5789999998  899999988877 4579999999988765 34443 33322  1 12334423333333332   22 


Q ss_pred             CCcccEEEECCCC
Q psy1959         230 GKYANVVFEAVGG  242 (296)
Q Consensus       230 ~~g~d~vld~~g~  242 (296)
                      ...+|+++++.|.
T Consensus        85 ~~~iD~lv~nAg~   97 (269)
T 2h7i_A           85 GNKLDGVVHSIGF   97 (269)
T ss_dssp             TCCEEEEEECCCC
T ss_pred             CCCceEEEECCcc
Confidence            1269999999884

>2fwm_X 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; enterobactin, rossman fold, chorismate metabolism, short-CHA oxidoreductase, tetramer; 2.00A {Escherichia coli}

Probab=96.48  E-value=0.0065  Score=51.70  Aligned_cols=77  Identities=19%  Similarity=0.176  Sum_probs=50.7

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCcEE-EEcCCchhHHHHHHHHhC-CCcccEEEE
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAA-LTFTNEKSLVNKVLEVSG-GKYANVVFE  238 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~i~~~~~-~~g~d~vld  238 (296)
                      .+++++|+|++|++|.+.++.+ ...|++|++++++++.    ++.+...+ .+..+..++.+.+.+... ..++|++++
T Consensus         6 ~~k~vlVTGas~giG~~ia~~l-~~~G~~V~~~~r~~~~----~~~~~~~~~~D~~d~~~~~~~~~~~~~~~g~id~lv~   80 (250)
T 2fwm_X            6 SGKNVWVTGAGKGIGYATALAF-VEAGAKVTGFDQAFTQ----EQYPFATEVMDVADAAQVAQVCQRLLAETERLDALVN   80 (250)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHH-HHTTCEEEEEESCCCS----SCCSSEEEECCTTCHHHHHHHHHHHHHHCSCCCEEEE
T ss_pred             CCCEEEEeCCCcHHHHHHHHHH-HHCCCEEEEEeCchhh----hcCCceEEEcCCCCHHHHHHHHHHHHHHcCCCCEEEE
Confidence            4689999999999999988877 4579999999987653    22332211 233342333333333321 236999999


Q ss_pred             CCCC
Q psy1959         239 AVGG  242 (296)
Q Consensus       239 ~~g~  242 (296)
                      +.|.
T Consensus        81 ~Ag~   84 (250)
T 2fwm_X           81 AAGI   84 (250)
T ss_dssp             CCCC
T ss_pred             CCCc
Confidence            9984

>3s8m_A Enoyl-ACP reductase; rossmann fold, oxidoreductase, NADH binding, fatty acid SYNT enoyl-ACP; 1.60A {Xanthomonas oryzae PV}

Probab=96.48  E-value=0.014  Score=53.84  Aligned_cols=87  Identities=17%  Similarity=0.224  Sum_probs=55.4

Q ss_pred             HHcCC-CCCcEEEEEcCCCcHHHHHHHHHHHh-CCCEEEEEeCCcchH----------------HHHHhcCCcEE-E--E
Q psy1959         155 RHAKL-KEKQTVLVTAAGGGLGLAAVDMATKI-YKAKVIGVCNSEDKT----------------DLIRQKGAWAA-L--T  213 (296)
Q Consensus       155 ~~~~~-~~g~~vlI~Ga~g~vG~aa~~la~~~-~g~~Vi~~~~~~~~~----------------~~~~~~g~~~~-~--~  213 (296)
                      ...++ +.++++||+|+++++|++++..+ .. .|++|+++++++++.                +.+++.|.... +  +
T Consensus        53 ~~~~~~~~gKvaLVTGASsGIG~AiA~~L-A~~~GA~Vv~~~r~~~~~~~~~~~ag~~n~~a~~~~~~~~G~~a~~i~~D  131 (422)
T 3s8m_A           53 ARGVRNDGPKKVLVIGASSGYGLASRITA-AFGFGADTLGVFFEKPGTASKAGTAGWYNSAAFDKHAKAAGLYSKSINGD  131 (422)
T ss_dssp             HTCCCSSSCSEEEEESCSSHHHHHHHHHH-HHHHCCEEEEEECCCCCCSSSCCCHHHHHHHHHHHHHHHTTCCEEEEESC
T ss_pred             hccccccCCCEEEEECCChHHHHHHHHHH-HHhCCCEEEEEeCCchhhhhhhcccccchhHHHHHHHHhcCCcEEEEEec
Confidence            34555 46889999999999999977766 34 699999998765431                34556665433 2  2


Q ss_pred             cCCchhHHHHHHHHhC-C-CcccEEEECCCC
Q psy1959         214 FTNEKSLVNKVLEVSG-G-KYANVVFEAVGG  242 (296)
Q Consensus       214 ~~~~~~~~~~i~~~~~-~-~g~d~vld~~g~  242 (296)
                      ..+.....+.+.+... - ..+|+++++.|.
T Consensus       132 vtd~~~v~~~v~~i~~~~~G~IDiLVNNAG~  162 (422)
T 3s8m_A          132 AFSDAARAQVIELIKTEMGGQVDLVVYSLAS  162 (422)
T ss_dssp             TTSHHHHHHHHHHHHHHSCSCEEEEEECCCC
T ss_pred             CCCHHHHHHHHHHHHHHcCCCCCEEEEcCcc
Confidence            2332333333333221 1 379999999875

>3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis}

Probab=96.48  E-value=0.0072  Score=51.79  Aligned_cols=81  Identities=22%  Similarity=0.241  Sum_probs=52.4

Q ss_pred             CCcEEEEEcCCC-cHHHHHHHHHHHhCCCEEEEEeCCcchHHHHH----hcC-CcEE---EEcCCchhHHHHHHHHhC-C
Q psy1959         161 EKQTVLVTAAGG-GLGLAAVDMATKIYKAKVIGVCNSEDKTDLIR----QKG-AWAA---LTFTNEKSLVNKVLEVSG-G  230 (296)
Q Consensus       161 ~g~~vlI~Ga~g-~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~----~~g-~~~~---~~~~~~~~~~~~i~~~~~-~  230 (296)
                      .+++++|+|++| ++|.+.++.+ ...|++|+++++++++.+.+.    +.+ ....   .+..+..+..+.+.+... .
T Consensus        21 ~~k~vlITGasg~GIG~~~a~~l-~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~   99 (266)
T 3o38_A           21 KGKVVLVTAAAGTGIGSTTARRA-LLEGADVVISDYHERRLGETRDQLADLGLGRVEAVVCDVTSTEAVDALITQTVEKA   99 (266)
T ss_dssp             TTCEEEESSCSSSSHHHHHHHHH-HHTTCEEEEEESCHHHHHHHHHHHHTTCSSCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCchHHHHHHHH-HHCCCEEEEecCCHHHHHHHHHHHHhcCCCceEEEEeCCCCHHHHHHHHHHHHHHh
Confidence            578999999976 8999987777 447999999999888765543    222 2222   233332333333333211 1


Q ss_pred             CcccEEEECCCC
Q psy1959         231 KYANVVFEAVGG  242 (296)
Q Consensus       231 ~g~d~vld~~g~  242 (296)
                      ..+|+++++.|.
T Consensus       100 g~id~li~~Ag~  111 (266)
T 3o38_A          100 GRLDVLVNNAGL  111 (266)
T ss_dssp             SCCCEEEECCCC
T ss_pred             CCCcEEEECCCc
Confidence            269999999984

>2nm0_A Probable 3-oxacyl-(acyl-carrier-protein) reductas; oxidoreductase; 1.99A {Streptomyces coelicolor}

Probab=96.48  E-value=0.0052  Score=52.60  Aligned_cols=76  Identities=21%  Similarity=0.180  Sum_probs=50.3

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCcE-EEEcCCchhHHHHHHHHhC-CCcccEEEE
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWA-ALTFTNEKSLVNKVLEVSG-GKYANVVFE  238 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~i~~~~~-~~g~d~vld  238 (296)
                      .+++++|+|++|++|.++++.+ ...|++|+++++++++.+.     ... ..+..+..+..+.+.+... -..+|++++
T Consensus        20 ~~k~vlVTGas~gIG~aia~~l-~~~G~~V~~~~r~~~~~~~-----~~~~~~Dl~d~~~v~~~~~~~~~~~g~iD~lv~   93 (253)
T 2nm0_A           20 MSRSVLVTGGNRGIGLAIARAF-ADAGDKVAITYRSGEPPEG-----FLAVKCDITDTEQVEQAYKEIEETHGPVEVLIA   93 (253)
T ss_dssp             CCCEEEEETTTSHHHHHHHHHH-HHTTCEEEEEESSSCCCTT-----SEEEECCTTSHHHHHHHHHHHHHHTCSCSEEEE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHH-HHCCCEEEEEeCChHhhcc-----ceEEEecCCCHHHHHHHHHHHHHHcCCCCEEEE
Confidence            4789999999999999988777 4479999999988765432     111 1233442333333333211 236899999


Q ss_pred             CCCC
Q psy1959         239 AVGG  242 (296)
Q Consensus       239 ~~g~  242 (296)
                      +.|.
T Consensus        94 nAg~   97 (253)
T 2nm0_A           94 NAGV   97 (253)
T ss_dssp             ECSC
T ss_pred             CCCC
Confidence            8874

>2dtx_A Glucose 1-dehydrogenase related protein; rossmann fold, oxidoreductase; HET: BMA; 1.60A {Thermoplasma acidophilum} PDB: 2dtd_A* 2dte_A* 2zk7_A

Probab=96.47  E-value=0.0063  Score=52.35  Aligned_cols=76  Identities=18%  Similarity=0.124  Sum_probs=49.6

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCcE-EEEcCCchhHHHHHHHHhC-CCcccEEEE
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWA-ALTFTNEKSLVNKVLEVSG-GKYANVVFE  238 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~i~~~~~-~~g~d~vld  238 (296)
                      .+++++|+|++|++|.++++.+ ...|++|+++++++++     ...... ..+..+..++.+.+.+... -.++|++++
T Consensus         7 ~~k~vlVTGas~gIG~~ia~~l-~~~G~~V~~~~r~~~~-----~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g~iD~lv~   80 (264)
T 2dtx_A            7 RDKVVIVTGASMGIGRAIAERF-VDEGSKVIDLSIHDPG-----EAKYDHIECDVTNPDQVKASIDHIFKEYGSISVLVN   80 (264)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHH-HHTTCEEEEEESSCCC-----SCSSEEEECCTTCHHHHHHHHHHHHHHHSCCCEEEE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHH-HHCCCEEEEEecCccc-----CCceEEEEecCCCHHHHHHHHHHHHHHcCCCCEEEE
Confidence            4689999999999999988877 4579999999987765     111211 1233332333333333211 126999999


Q ss_pred             CCCC
Q psy1959         239 AVGG  242 (296)
Q Consensus       239 ~~g~  242 (296)
                      +.|.
T Consensus        81 ~Ag~   84 (264)
T 2dtx_A           81 NAGI   84 (264)
T ss_dssp             CCCC
T ss_pred             CCCC
Confidence            9984

>2gn4_A FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann fold, TYK triad, SDR, enzyme, NADP, NADPH, lyase; HET: NDP UD1 MES; 1.90A {Helicobacter pylori} PDB: 2gn6_A* 2gn8_A* 2gn9_A* 2gna_A*

Probab=96.46  E-value=0.012  Score=52.56  Aligned_cols=79  Identities=16%  Similarity=0.143  Sum_probs=52.9

Q ss_pred             CCCcEEEEEcCCCcHHHHHHHHHHHhCCC-EEEEEeCCcchHHHHHh-cC-Cc-EEEEcCCchhHHHHHHHHhCCCcccE
Q psy1959         160 KEKQTVLVTAAGGGLGLAAVDMATKIYKA-KVIGVCNSEDKTDLIRQ-KG-AW-AALTFTNEKSLVNKVLEVSGGKYANV  235 (296)
Q Consensus       160 ~~g~~vlI~Ga~g~vG~aa~~la~~~~g~-~Vi~~~~~~~~~~~~~~-~g-~~-~~~~~~~~~~~~~~i~~~~~~~g~d~  235 (296)
                      -.+++|+|+|++|.+|..+++.+.+..|. +|+++++++.+...+.+ +. .. ..+.. +..+ .+.+.++..  ++|+
T Consensus        19 ~~~k~vlVTGatG~iG~~l~~~L~~~~g~~~V~~~~r~~~~~~~~~~~~~~~~v~~~~~-Dl~d-~~~l~~~~~--~~D~   94 (344)
T 2gn4_A           19 LDNQTILITGGTGSFGKCFVRKVLDTTNAKKIIVYSRDELKQSEMAMEFNDPRMRFFIG-DVRD-LERLNYALE--GVDI   94 (344)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHHCCCSEEEEEESCHHHHHHHHHHHCCTTEEEEEC-CTTC-HHHHHHHTT--TCSE
T ss_pred             hCCCEEEEECCCcHHHHHHHHHHHhhCCCCEEEEEECChhhHHHHHHHhcCCCEEEEEC-CCCC-HHHHHHHHh--cCCE
Confidence            35789999999999999988877342287 99999998887765543 21 11 22222 1111 234444443  7999


Q ss_pred             EEECCCC
Q psy1959         236 VFEAVGG  242 (296)
Q Consensus       236 vld~~g~  242 (296)
                      ||.+.+.
T Consensus        95 Vih~Aa~  101 (344)
T 2gn4_A           95 CIHAAAL  101 (344)
T ss_dssp             EEECCCC
T ss_pred             EEECCCC
Confidence            9999985

>3edm_A Short chain dehydrogenase; structural genomics, oxidoreductase, PSI-2, P structure initiative; 2.30A {Agrobacterium tumefaciens str}

Probab=96.45  E-value=0.0087  Score=51.27  Aligned_cols=81  Identities=17%  Similarity=0.163  Sum_probs=50.2

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEE-eCCcchHHHH----HhcCCcEE---EEcCCchhHHHHHHHHhC-CC
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGV-CNSEDKTDLI----RQKGAWAA---LTFTNEKSLVNKVLEVSG-GK  231 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~-~~~~~~~~~~----~~~g~~~~---~~~~~~~~~~~~i~~~~~-~~  231 (296)
                      .+++++|+|+++++|.++++.+ ...|++|+++ .+++++.+.+    ++.+....   .+..+..+..+.+.+... -.
T Consensus         7 ~~k~vlVTGas~GIG~aia~~l-a~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g   85 (259)
T 3edm_A            7 TNRTIVVAGAGRDIGRACAIRF-AQEGANVVLTYNGAAEGAATAVAEIEKLGRSALAIKADLTNAAEVEAAISAAADKFG   85 (259)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHH-HHTTCEEEEEECSSCHHHHHHHHHHHTTTSCCEEEECCTTCHHHHHHHHHHHHHHHC
T ss_pred             CCCEEEEECCCchHHHHHHHHH-HHCCCEEEEEcCCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHhC
Confidence            5789999999999999988777 4579999988 4454443332    33343322   233332333333333211 12


Q ss_pred             cccEEEECCCC
Q psy1959         232 YANVVFEAVGG  242 (296)
Q Consensus       232 g~d~vld~~g~  242 (296)
                      ++|+++++.|.
T Consensus        86 ~id~lv~nAg~   96 (259)
T 3edm_A           86 EIHGLVHVAGG   96 (259)
T ss_dssp             SEEEEEECCCC
T ss_pred             CCCEEEECCCc
Confidence            69999999873

>2bka_A CC3, TAT-interacting protein TIP30; NADPH, PEG600, transcription; HET: NDP PE8; 1.7A {Homo sapiens} SCOP: c.2.1.2 PDB: 2fmu_A

Probab=96.41  E-value=0.0016  Score=54.87  Aligned_cols=75  Identities=16%  Similarity=0.132  Sum_probs=49.4

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCC--EEEEEeCCcchHHHHHhcCCcEE-EEcCCchhHHHHHHHHhCCCcccEEE
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKA--KVIGVCNSEDKTDLIRQKGAWAA-LTFTNEKSLVNKVLEVSGGKYANVVF  237 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~--~Vi~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~i~~~~~~~g~d~vl  237 (296)
                      .+.+++|+|++|++|.++++.+ ...|+  +|+++++++++.+.....+...+ .+..+    .+.+.+..  +++|+++
T Consensus        17 ~~~~vlVtGasg~iG~~l~~~L-~~~G~~~~V~~~~r~~~~~~~~~~~~~~~~~~D~~d----~~~~~~~~--~~~d~vi   89 (242)
T 2bka_A           17 QNKSVFILGASGETGRVLLKEI-LEQGLFSKVTLIGRRKLTFDEEAYKNVNQEVVDFEK----LDDYASAF--QGHDVGF   89 (242)
T ss_dssp             TCCEEEEECTTSHHHHHHHHHH-HHHTCCSEEEEEESSCCCCCSGGGGGCEEEECCGGG----GGGGGGGG--SSCSEEE
T ss_pred             cCCeEEEECCCcHHHHHHHHHH-HcCCCCCEEEEEEcCCCCccccccCCceEEecCcCC----HHHHHHHh--cCCCEEE
Confidence            3678999999999999988877 34688  99999998765443222222111 12222    12233333  2799999


Q ss_pred             ECCCC
Q psy1959         238 EAVGG  242 (296)
Q Consensus       238 d~~g~  242 (296)
                      ++.|.
T Consensus        90 ~~ag~   94 (242)
T 2bka_A           90 CCLGT   94 (242)
T ss_dssp             ECCCC
T ss_pred             ECCCc
Confidence            99986

>1uzm_A 3-oxoacyl-[acyl-carrier protein] reductase; beta-ketoacyl reductase, oxidoreductase; 1.49A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1uzn_A* 2ntn_A 1uzl_A

Probab=96.41  E-value=0.0026  Score=54.16  Aligned_cols=77  Identities=19%  Similarity=0.197  Sum_probs=51.0

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCcEEEEcCCchhHHHHHHHHhC-CCcccEEEEC
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNKVLEVSG-GKYANVVFEA  239 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~-~~g~d~vld~  239 (296)
                      .+++++|+|++|++|.++++.+ ...|++|+++++++++.+.+.  +  ...+..+..+..+.+.+... ...+|+++++
T Consensus        14 ~~k~vlVTGas~gIG~~ia~~l-~~~G~~V~~~~r~~~~~~~~~--~--~~~D~~~~~~~~~~~~~~~~~~g~id~lv~~   88 (247)
T 1uzm_A           14 VSRSVLVTGGNRGIGLAIAQRL-AADGHKVAVTHRGSGAPKGLF--G--VEVDVTDSDAVDRAFTAVEEHQGPVEVLVSN   88 (247)
T ss_dssp             CCCEEEETTTTSHHHHHHHHHH-HHTTCEEEEEESSSCCCTTSE--E--EECCTTCHHHHHHHHHHHHHHHSSCSEEEEE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHH-HHCCCEEEEEeCChHHHHHhc--C--eeccCCCHHHHHHHHHHHHHHcCCCCEEEEC
Confidence            5789999999999999988877 447999999998876554321  1  22344442333333333211 1268999999


Q ss_pred             CCC
Q psy1959         240 VGG  242 (296)
Q Consensus       240 ~g~  242 (296)
                      .|.
T Consensus        89 Ag~   91 (247)
T 1uzm_A           89 AGL   91 (247)
T ss_dssp             CSC
T ss_pred             CCC
Confidence            884

>1edo_A Beta-keto acyl carrier protein reductase; nucleotide fold, rossmann fold, oxidoreductase; HET: NAP; 2.30A {Brassica napus} SCOP: c.2.1.2 PDB: 2cdh_G

Probab=96.40  E-value=0.0074  Score=50.83  Aligned_cols=80  Identities=20%  Similarity=0.136  Sum_probs=50.9

Q ss_pred             CcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEE-eCCcchHHHHH----hcCCcEE---EEcCCchhHHHHHHHHhC-CCc
Q psy1959         162 KQTVLVTAAGGGLGLAAVDMATKIYKAKVIGV-CNSEDKTDLIR----QKGAWAA---LTFTNEKSLVNKVLEVSG-GKY  232 (296)
Q Consensus       162 g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~-~~~~~~~~~~~----~~g~~~~---~~~~~~~~~~~~i~~~~~-~~g  232 (296)
                      |++++|+|++|++|.+.++.+ ...|++|+++ ++++++.+.+.    +.+....   .+..+..++.+.+.+... -.+
T Consensus         1 ~k~vlVTGasggiG~~la~~l-~~~G~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~   79 (244)
T 1edo_A            1 SPVVVVTGASRGIGKAIALSL-GKAGCKVLVNYARSAKAAEEVSKQIEAYGGQAITFGGDVSKEADVEAMMKTAIDAWGT   79 (244)
T ss_dssp             CCEEEETTCSSHHHHHHHHHH-HHTTCEEEEEESSCHHHHHHHHHHHHHHTCEEEEEECCTTSHHHHHHHHHHHHHHSSC
T ss_pred             CCEEEEeCCCchHHHHHHHHH-HHCCCEEEEEcCCCHHHHHHHHHHHHhcCCcEEEEeCCCCCHHHHHHHHHHHHHHcCC
Confidence            468999999999999988877 4579999985 77766654432    2243222   233332333333333211 136


Q ss_pred             ccEEEECCCC
Q psy1959         233 ANVVFEAVGG  242 (296)
Q Consensus       233 ~d~vld~~g~  242 (296)
                      +|+++++.|.
T Consensus        80 id~li~~Ag~   89 (244)
T 1edo_A           80 IDVVVNNAGI   89 (244)
T ss_dssp             CSEEEECCCC
T ss_pred             CCEEEECCCC
Confidence            9999999884

>3osu_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, csgid, center for structural genomics O infectious diseases; 1.90A {Staphylococcus aureus subsp} SCOP: c.2.1.0 PDB: 3sj7_A*

Probab=96.40  E-value=0.0096  Score=50.51  Aligned_cols=81  Identities=19%  Similarity=0.165  Sum_probs=50.9

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeC-CcchHHHH----HhcCCcEEE---EcCCchhHHHHHHHHhC-CC
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCN-SEDKTDLI----RQKGAWAAL---TFTNEKSLVNKVLEVSG-GK  231 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~-~~~~~~~~----~~~g~~~~~---~~~~~~~~~~~i~~~~~-~~  231 (296)
                      .+++++|+|++|++|.+.++.+ ...|++|+++++ ++++.+.+    ++.+.....   +..+..+..+.+.+... -.
T Consensus         3 ~~k~~lVTGas~gIG~~ia~~l-~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g   81 (246)
T 3osu_A            3 MTKSALVTGASRGIGRSIALQL-AEEGYNVAVNYAGSKEKAEAVVEEIKAKGVDSFAIQANVADADEVKAMIKEVVSQFG   81 (246)
T ss_dssp             CSCEEEETTCSSHHHHHHHHHH-HHTTCEEEEEESSCHHHHHHHHHHHHHTTSCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEECCCChHHHHHHHHH-HHCCCEEEEEeCCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence            4689999999999999988777 457999998876 43444333    334544332   23332333333333211 12


Q ss_pred             cccEEEECCCC
Q psy1959         232 YANVVFEAVGG  242 (296)
Q Consensus       232 g~d~vld~~g~  242 (296)
                      ++|+++++.|.
T Consensus        82 ~id~lv~nAg~   92 (246)
T 3osu_A           82 SLDVLVNNAGI   92 (246)
T ss_dssp             CCCEEEECCCC
T ss_pred             CCCEEEECCCC
Confidence            69999999884

>1h5q_A NADP-dependent mannitol dehydrogenase; oxidoreductase, mannitol metabolism; HET: NAP; 1.50A {Agaricus bisporus} SCOP: c.2.1.2

Probab=96.39  E-value=0.011  Score=50.39  Aligned_cols=81  Identities=16%  Similarity=0.169  Sum_probs=51.3

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHH-HHh----cCCcEE---EEcCCchhHHHHHHHHhC-CC
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDL-IRQ----KGAWAA---LTFTNEKSLVNKVLEVSG-GK  231 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~-~~~----~g~~~~---~~~~~~~~~~~~i~~~~~-~~  231 (296)
                      .+++++|+|++|++|.++++.+ ...|++|++++++.++... +++    .+....   .+..+..++.+.+.+... -.
T Consensus        13 ~~k~vlITGasggiG~~~a~~l-~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~   91 (265)
T 1h5q_A           13 VNKTIIVTGGNRGIGLAFTRAV-AAAGANVAVIYRSAADAVEVTEKVGKEFGVKTKAYQCDVSNTDIVTKTIQQIDADLG   91 (265)
T ss_dssp             TTEEEEEETTTSHHHHHHHHHH-HHTTEEEEEEESSCTTHHHHHHHHHHHHTCCEEEEECCTTCHHHHHHHHHHHHHHSC
T ss_pred             CCCEEEEECCCchHHHHHHHHH-HHCCCeEEEEeCcchhhHHHHHHHHHhcCCeeEEEEeeCCCHHHHHHHHHHHHHhcC
Confidence            4689999999999999988877 4479999999986554322 222    243322   233332333333333321 13


Q ss_pred             cccEEEECCCC
Q psy1959         232 YANVVFEAVGG  242 (296)
Q Consensus       232 g~d~vld~~g~  242 (296)
                      .+|+++++.|.
T Consensus        92 ~id~li~~Ag~  102 (265)
T 1h5q_A           92 PISGLIANAGV  102 (265)
T ss_dssp             SEEEEEECCCC
T ss_pred             CCCEEEECCCc
Confidence            69999999884

>1sby_A Alcohol dehydrogenase; ternary complex, NAD, trifluoroethanol, oxidoreductase; HET: NAD; 1.10A {Scaptodrosophila lebanonensis} SCOP: c.2.1.2 PDB: 1b14_A* 1b15_A* 1a4u_A* 1b2l_A* 1b16_A* 3rj5_A* 3rj9_A* 1mg5_A*

Probab=96.39  E-value=0.0076  Score=51.28  Aligned_cols=81  Identities=15%  Similarity=0.124  Sum_probs=50.4

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCE-EEEEeCCcc--hHHHHHhc--CCcEE---EEcCCc-hhHHHHHHHHhC-C
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAK-VIGVCNSED--KTDLIRQK--GAWAA---LTFTNE-KSLVNKVLEVSG-G  230 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~-Vi~~~~~~~--~~~~~~~~--g~~~~---~~~~~~-~~~~~~i~~~~~-~  230 (296)
                      .+++++|+|++|++|.++++.+ ...|++ |++++++++  ..+.+.+.  +....   .+..+. .+..+.+.+... -
T Consensus         4 ~~k~vlVtGas~gIG~~~a~~l-~~~G~~~v~~~~r~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~   82 (254)
T 1sby_A            4 TNKNVIFVAALGGIGLDTSREL-VKRNLKNFVILDRVENPTALAELKAINPKVNITFHTYDVTVPVAESKKLLKKIFDQL   82 (254)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHH-HHTCCSEEEEEESSCCHHHHHHHHHHCTTSEEEEEECCTTSCHHHHHHHHHHHHHHH
T ss_pred             CCcEEEEECCCChHHHHHHHHH-HHCCCcEEEEEecCchHHHHHHHHHhCCCceEEEEEEecCCChHHHHHHHHHHHHhc
Confidence            4689999999999999988777 447995 898888763  34444433  22221   233332 233333332211 1


Q ss_pred             CcccEEEECCCC
Q psy1959         231 KYANVVFEAVGG  242 (296)
Q Consensus       231 ~g~d~vld~~g~  242 (296)
                      .++|+++++.|.
T Consensus        83 g~id~lv~~Ag~   94 (254)
T 1sby_A           83 KTVDILINGAGI   94 (254)
T ss_dssp             SCCCEEEECCCC
T ss_pred             CCCCEEEECCcc
Confidence            269999999984

>3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid, structural genomics, seattle structural genomics center for infectious disease; 2.35A {Brucella melitensis} PDB: 4eit_A*

Probab=96.39  E-value=0.0082  Score=52.54  Aligned_cols=81  Identities=11%  Similarity=0.093  Sum_probs=51.5

Q ss_pred             CCcEEEEEcCCCc--HHHHHHHHHHHhCCCEEEEEeCCcchHHHHHh----cCCcEEE--EcCCchhHHHHHHHHhC-CC
Q psy1959         161 EKQTVLVTAAGGG--LGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQ----KGAWAAL--TFTNEKSLVNKVLEVSG-GK  231 (296)
Q Consensus       161 ~g~~vlI~Ga~g~--vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~----~g~~~~~--~~~~~~~~~~~i~~~~~-~~  231 (296)
                      .+++++|+|++|+  +|.++++.+ ...|++|++++++++..+.+++    .+....+  +..+..+..+.+.+... -.
T Consensus        30 ~gk~~lVTGasg~~GIG~aia~~l-a~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g  108 (293)
T 3grk_A           30 QGKRGLILGVANNRSIAWGIAKAA-REAGAELAFTYQGDALKKRVEPLAEELGAFVAGHCDVADAASIDAVFETLEKKWG  108 (293)
T ss_dssp             TTCEEEEECCCSSSSHHHHHHHHH-HHTTCEEEEEECSHHHHHHHHHHHHHHTCEEEEECCTTCHHHHHHHHHHHHHHTS
T ss_pred             CCCEEEEEcCCCCCcHHHHHHHHH-HHCCCEEEEEcCCHHHHHHHHHHHHhcCCceEEECCCCCHHHHHHHHHHHHHhcC
Confidence            6889999999855  999987777 4479999999988654433332    2432222  33342333333333321 12


Q ss_pred             cccEEEECCCC
Q psy1959         232 YANVVFEAVGG  242 (296)
Q Consensus       232 g~d~vld~~g~  242 (296)
                      .+|+++++.|.
T Consensus       109 ~iD~lVnnAG~  119 (293)
T 3grk_A          109 KLDFLVHAIGF  119 (293)
T ss_dssp             CCSEEEECCCC
T ss_pred             CCCEEEECCcc
Confidence            69999999984

>3u5t_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.40A {Sinorhizobium meliloti}

Probab=96.38  E-value=0.019  Score=49.51  Aligned_cols=81  Identities=14%  Similarity=0.101  Sum_probs=49.5

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeC-CcchHHHH----HhcCCcEE---EEcCCchhHHHHHHHHhC-CC
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCN-SEDKTDLI----RQKGAWAA---LTFTNEKSLVNKVLEVSG-GK  231 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~-~~~~~~~~----~~~g~~~~---~~~~~~~~~~~~i~~~~~-~~  231 (296)
                      .+++++|+|+++++|.++++.+ ...|++|++.++ ++++.+.+    ++.+....   .+..+..+..+.+.+... -.
T Consensus        26 ~~k~~lVTGas~GIG~aia~~l-a~~G~~Vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g  104 (267)
T 3u5t_A           26 TNKVAIVTGASRGIGAAIAARL-ASDGFTVVINYAGKAAAAEEVAGKIEAAGGKALTAQADVSDPAAVRRLFATAEEAFG  104 (267)
T ss_dssp             -CCEEEEESCSSHHHHHHHHHH-HHHTCEEEEEESSCSHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEeCCCCHHHHHHHHHH-HHCCCEEEEEcCCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence            5789999999999999977766 346999998744 44444433    33344332   233332333333332211 12


Q ss_pred             cccEEEECCCC
Q psy1959         232 YANVVFEAVGG  242 (296)
Q Consensus       232 g~d~vld~~g~  242 (296)
                      ++|+++++.|.
T Consensus       105 ~iD~lvnnAG~  115 (267)
T 3u5t_A          105 GVDVLVNNAGI  115 (267)
T ss_dssp             CEEEEEECCCC
T ss_pred             CCCEEEECCCC
Confidence            79999999984

>2wyu_A Enoyl-[acyl carrier protein] reductase; oxidoreductase, fatty acid biosynthesis, oxidation reduction; 1.50A {Thermus thermophilus} PDB: 1ulu_A 2wyv_A* 2wyw_A* 2yw9_A*

Probab=96.38  E-value=0.0085  Score=51.31  Aligned_cols=81  Identities=17%  Similarity=0.115  Sum_probs=51.2

Q ss_pred             CCcEEEEEcCC--CcHHHHHHHHHHHhCCCEEEEEeCCcc---hHHHHHh-cCCcEEE--EcCCchhHHHHHHHHhC-CC
Q psy1959         161 EKQTVLVTAAG--GGLGLAAVDMATKIYKAKVIGVCNSED---KTDLIRQ-KGAWAAL--TFTNEKSLVNKVLEVSG-GK  231 (296)
Q Consensus       161 ~g~~vlI~Ga~--g~vG~aa~~la~~~~g~~Vi~~~~~~~---~~~~~~~-~g~~~~~--~~~~~~~~~~~i~~~~~-~~  231 (296)
                      .+++++|+|++  |++|.++++.+ ...|++|++++++++   ..+.+.+ .+....+  +..+..+..+.+.+... -.
T Consensus         7 ~~k~vlVTGas~~~gIG~~ia~~l-~~~G~~V~~~~r~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g   85 (261)
T 2wyu_A            7 SGKKALVMGVTNQRSLGFAIAAKL-KEAGAEVALSYQAERLRPEAEKLAEALGGALLFRADVTQDEELDALFAGVKEAFG   85 (261)
T ss_dssp             TTCEEEEESCCSSSSHHHHHHHHH-HHHTCEEEEEESCGGGHHHHHHHHHHTTCCEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEECCCCCCcHHHHHHHHH-HHCCCEEEEEcCCHHHHHHHHHHHHhcCCcEEEECCCCCHHHHHHHHHHHHHHcC
Confidence            47899999998  99999988777 346999999998875   3333332 3322222  33332333333332211 12


Q ss_pred             cccEEEECCCC
Q psy1959         232 YANVVFEAVGG  242 (296)
Q Consensus       232 g~d~vld~~g~  242 (296)
                      ++|+++++.|.
T Consensus        86 ~iD~lv~~Ag~   96 (261)
T 2wyu_A           86 GLDYLVHAIAF   96 (261)
T ss_dssp             SEEEEEECCCC
T ss_pred             CCCEEEECCCC
Confidence            69999999984

>3e9n_A Putative short-chain dehydrogenase/reductase; structural genomics, unknown function, oxidoreductase, PSI- 2; 2.40A {Corynebacterium glutamicum}

Probab=96.37  E-value=0.0053  Score=52.00  Aligned_cols=79  Identities=14%  Similarity=0.138  Sum_probs=49.4

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCcEEEEcCCchhHH--HHHHHHh-CCCcccEEE
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLV--NKVLEVS-GGKYANVVF  237 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~--~~i~~~~-~~~g~d~vl  237 (296)
                      .+++++|+|++|++|.+.++.+ .. |++|+++++++++.+.+.+......+.. +..+..  +.+.+.. .-..+|+++
T Consensus         4 ~~k~vlITGas~gIG~~~a~~l-~~-g~~v~~~~r~~~~~~~~~~~~~~~~~~~-D~~~~~~~~~~~~~~~~~~~id~lv   80 (245)
T 3e9n_A            4 KKKIAVVTGATGGMGIEIVKDL-SR-DHIVYALGRNPEHLAALAEIEGVEPIES-DIVKEVLEEGGVDKLKNLDHVDTLV   80 (245)
T ss_dssp             --CEEEEESTTSHHHHHHHHHH-TT-TSEEEEEESCHHHHHHHHTSTTEEEEEC-CHHHHHHTSSSCGGGTTCSCCSEEE
T ss_pred             CCCEEEEEcCCCHHHHHHHHHH-hC-CCeEEEEeCCHHHHHHHHhhcCCcceec-ccchHHHHHHHHHHHHhcCCCCEEE
Confidence            4689999999999999988877 43 8999999999888887776432222222 101110  1111111 123699999


Q ss_pred             ECCCC
Q psy1959         238 EAVGG  242 (296)
Q Consensus       238 d~~g~  242 (296)
                      ++.|.
T Consensus        81 ~~Ag~   85 (245)
T 3e9n_A           81 HAAAV   85 (245)
T ss_dssp             ECC--
T ss_pred             ECCCc
Confidence            99985

>2p91_A Enoyl-[acyl-carrier-protein] reductase [NADH]; NADH-dependent enoyl-ACP reductase, FABI, aquifex A VF5, structural genomics, PSI; 2.00A {Aquifex aeolicus}

Probab=96.37  E-value=0.016  Score=50.24  Aligned_cols=81  Identities=9%  Similarity=0.046  Sum_probs=51.6

Q ss_pred             CCcEEEEEcCC--CcHHHHHHHHHHHhCCCEEEEEeCCcc---hHHHHHh-cCCcEE--EEcCCchhHHHHHHHHhC-CC
Q psy1959         161 EKQTVLVTAAG--GGLGLAAVDMATKIYKAKVIGVCNSED---KTDLIRQ-KGAWAA--LTFTNEKSLVNKVLEVSG-GK  231 (296)
Q Consensus       161 ~g~~vlI~Ga~--g~vG~aa~~la~~~~g~~Vi~~~~~~~---~~~~~~~-~g~~~~--~~~~~~~~~~~~i~~~~~-~~  231 (296)
                      .+++++|+|++  |++|.++++.+ ...|++|++++++++   ..+.+.+ .+....  .+..+..+..+.+.+... -.
T Consensus        20 ~~k~vlVTGas~~~gIG~~ia~~l-~~~G~~V~~~~r~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g   98 (285)
T 2p91_A           20 EGKRALITGVANERSIAYGIAKSF-HREGAQLAFTYATPKLEKRVREIAKGFGSDLVVKCDVSLDEDIKNLKKFLEENWG   98 (285)
T ss_dssp             TTCEEEECCCSSTTSHHHHHHHHH-HHTTCEEEEEESSGGGHHHHHHHHHHTTCCCEEECCTTCHHHHHHHHHHHHHHTS
T ss_pred             CCCEEEEECCCCCCcHHHHHHHHH-HHcCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence            57899999998  89999988777 447999999998875   3333332 232222  233342333333333211 13


Q ss_pred             cccEEEECCCC
Q psy1959         232 YANVVFEAVGG  242 (296)
Q Consensus       232 g~d~vld~~g~  242 (296)
                      ++|+++++.|.
T Consensus        99 ~iD~lv~~Ag~  109 (285)
T 2p91_A           99 SLDIIVHSIAY  109 (285)
T ss_dssp             CCCEEEECCCC
T ss_pred             CCCEEEECCCC
Confidence            69999999984

>3nrc_A Enoyl-[acyl-carrier-protein] reductase (NADH); rossmann fold, NADH BI oxidoreductase; HET: NAD TCL; 2.10A {Francisella tularensis subsp} PDB: 3uic_A* 2jjy_A*

Probab=96.37  E-value=0.0077  Score=52.21  Aligned_cols=81  Identities=7%  Similarity=0.084  Sum_probs=52.7

Q ss_pred             CCcEEEEEcCC--CcHHHHHHHHHHHhCCCEEEEEeCCc--chHHHHHhc-CCcEE--EEcCCchhHHHHHHHHhC-CCc
Q psy1959         161 EKQTVLVTAAG--GGLGLAAVDMATKIYKAKVIGVCNSE--DKTDLIRQK-GAWAA--LTFTNEKSLVNKVLEVSG-GKY  232 (296)
Q Consensus       161 ~g~~vlI~Ga~--g~vG~aa~~la~~~~g~~Vi~~~~~~--~~~~~~~~~-g~~~~--~~~~~~~~~~~~i~~~~~-~~g  232 (296)
                      ++++++|+|++  +++|.+.++.+ ...|++|+++++++  ++.+.+.+. +....  .+..+..+..+.+.+... -..
T Consensus        25 ~~k~vlVTGasg~~GIG~~ia~~l-~~~G~~V~~~~r~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g~  103 (280)
T 3nrc_A           25 AGKKILITGLLSNKSIAYGIAKAM-HREGAELAFTYVGQFKDRVEKLCAEFNPAAVLPCDVISDQEIKDLFVELGKVWDG  103 (280)
T ss_dssp             TTCEEEECCCCSTTCHHHHHHHHH-HHTTCEEEEEECTTCHHHHHHHHGGGCCSEEEECCTTCHHHHHHHHHHHHHHCSS
T ss_pred             CCCEEEEECCCCCCCHHHHHHHHH-HHcCCEEEEeeCchHHHHHHHHHHhcCCceEEEeecCCHHHHHHHHHHHHHHcCC
Confidence            57899999988  66999877777 45799999999887  555555443 32222  233342333333333321 236


Q ss_pred             ccEEEECCCC
Q psy1959         233 ANVVFEAVGG  242 (296)
Q Consensus       233 ~d~vld~~g~  242 (296)
                      +|+++++.|.
T Consensus       104 id~li~nAg~  113 (280)
T 3nrc_A          104 LDAIVHSIAF  113 (280)
T ss_dssp             CCEEEECCCC
T ss_pred             CCEEEECCcc
Confidence            9999999985

>3r3s_A Oxidoreductase; structural genomics, csgid, center for structural genomics O infectious diseases, 3-layer(ABA) sandwich, rossmann fold; HET: NAD; 1.25A {Salmonella enterica subsp}

Probab=96.37  E-value=0.022  Score=49.71  Aligned_cols=81  Identities=19%  Similarity=0.131  Sum_probs=50.6

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcc--hHHHH----HhcCCcEEE---EcCCchhHHHHHHHHhC-C
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSED--KTDLI----RQKGAWAAL---TFTNEKSLVNKVLEVSG-G  230 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~--~~~~~----~~~g~~~~~---~~~~~~~~~~~i~~~~~-~  230 (296)
                      .+++++|+|+++++|.+.++.+ ...|++|++++++.+  +.+.+    ++.+....+   +..+..+..+.+.+... -
T Consensus        48 ~~k~vlVTGas~GIG~aia~~l-a~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~  126 (294)
T 3r3s_A           48 KDRKALVTGGDSGIGRAAAIAY-AREGADVAINYLPAEEEDAQQVKALIEECGRKAVLLPGDLSDESFARSLVHKAREAL  126 (294)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHH-HHTTCEEEEECCGGGHHHHHHHHHHHHHTTCCEEECCCCTTSHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHH-HHCCCEEEEEeCCcchhHHHHHHHHHHHcCCcEEEEEecCCCHHHHHHHHHHHHHHc
Confidence            5789999999999999988777 457999999887632  23222    334543332   22332222222222211 1


Q ss_pred             CcccEEEECCCC
Q psy1959         231 KYANVVFEAVGG  242 (296)
Q Consensus       231 ~g~d~vld~~g~  242 (296)
                      .++|+++++.|.
T Consensus       127 g~iD~lv~nAg~  138 (294)
T 3r3s_A          127 GGLDILALVAGK  138 (294)
T ss_dssp             TCCCEEEECCCC
T ss_pred             CCCCEEEECCCC
Confidence            279999999884

>3rft_A Uronate dehydrogenase; apoenzyme, rossmann fold, NAD binding, oxidoreductase; 1.90A {Agrobacterium tumefaciens} PDB: 3rfv_A* 3rfx_A*

Probab=96.35  E-value=0.0054  Score=52.73  Aligned_cols=72  Identities=17%  Similarity=0.036  Sum_probs=48.9

Q ss_pred             CcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCcEEEEcCCchhHHHHHHHHhCCCcccEEEECCC
Q psy1959         162 KQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNKVLEVSGGKYANVVFEAVG  241 (296)
Q Consensus       162 g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~g~d~vld~~g  241 (296)
                      +++|+|+|++|++|.++++.+ ...|++|+++++++.+..     +....+..-+..+ .+.+.++..  ++|++|++.|
T Consensus         3 ~k~vlVTGasg~IG~~la~~L-~~~G~~V~~~~r~~~~~~-----~~~~~~~~~Dl~d-~~~~~~~~~--~~D~vi~~Ag   73 (267)
T 3rft_A            3 MKRLLVTGAAGQLGRVMRERL-APMAEILRLADLSPLDPA-----GPNEECVQCDLAD-ANAVNAMVA--GCDGIVHLGG   73 (267)
T ss_dssp             EEEEEEESTTSHHHHHHHHHT-GGGEEEEEEEESSCCCCC-----CTTEEEEECCTTC-HHHHHHHHT--TCSEEEECCS
T ss_pred             CCEEEEECCCCHHHHHHHHHH-HhcCCEEEEEecCCcccc-----CCCCEEEEcCCCC-HHHHHHHHc--CCCEEEECCC
Confidence            468999999999999988887 457999999999876543     2222221111111 234444443  7999999987


Q ss_pred             C
Q psy1959         242 G  242 (296)
Q Consensus       242 ~  242 (296)
                      .
T Consensus        74 ~   74 (267)
T 3rft_A           74 I   74 (267)
T ss_dssp             C
T ss_pred             C
Confidence            4

>3uxy_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: NAD; 2.10A {Rhodobacter sphaeroides}

Probab=96.34  E-value=0.001  Score=57.59  Aligned_cols=75  Identities=20%  Similarity=0.119  Sum_probs=48.9

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCcEEEEcCCchhHHH---HHHHHhCCCcccEEE
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVN---KVLEVSGGKYANVVF  237 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~---~i~~~~~~~g~d~vl  237 (296)
                      .|++++|+|+++++|.++++.+ ...|++|++++++.++.+.....    ..+..+.....+   .+.+..  .++|+++
T Consensus        27 ~gk~vlVTGas~gIG~aia~~l-a~~G~~V~~~~r~~~~~~~~~~~----~~Dv~~~~~~~~~~~~~~~~~--g~iD~lv   99 (266)
T 3uxy_A           27 EGKVALVTGAAGGIGGAVVTAL-RAAGARVAVADRAVAGIAADLHL----PGDLREAAYADGLPGAVAAGL--GRLDIVV   99 (266)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHH-HHTTCEEEECSSCCTTSCCSEEC----CCCTTSHHHHHHHHHHHHHHH--SCCCEEE
T ss_pred             CCCEEEEeCCCcHHHHHHHHHH-HHCCCEEEEEeCCHHHHHhhhcc----CcCCCCHHHHHHHHHHHHHhc--CCCCEEE
Confidence            5789999999999999988777 44799999999876654322111    112223122222   222223  2699999


Q ss_pred             ECCCC
Q psy1959         238 EAVGG  242 (296)
Q Consensus       238 d~~g~  242 (296)
                      ++.|.
T Consensus       100 nnAg~  104 (266)
T 3uxy_A          100 NNAGV  104 (266)
T ss_dssp             ECCCC
T ss_pred             ECCCC
Confidence            99984

>3zu3_A Putative reductase YPO4104/Y4119/YP_4011; oxidoreductase, fatty acid biosynthesis II, short-chain dehydrogenase reductase superfamily; HET: NAI; 1.80A {Yersinia pestis} PDB: 3zu4_A* 3zu5_A* 3zu2_A*

Probab=96.33  E-value=0.035  Score=50.78  Aligned_cols=86  Identities=21%  Similarity=0.224  Sum_probs=53.6

Q ss_pred             HcCC-CCCcEEEEEcCCCcHHHHHHHHHHHh-CCCEEEEEeCCcchH----------------HHHHhcCCcEE-E--Ec
Q psy1959         156 HAKL-KEKQTVLVTAAGGGLGLAAVDMATKI-YKAKVIGVCNSEDKT----------------DLIRQKGAWAA-L--TF  214 (296)
Q Consensus       156 ~~~~-~~g~~vlI~Ga~g~vG~aa~~la~~~-~g~~Vi~~~~~~~~~----------------~~~~~~g~~~~-~--~~  214 (296)
                      .... ..+++++|+|+++++|++++..+ .. .|++|+++++++++.                +.+++.|.... +  +.
T Consensus        40 ~~~~~~~gKvaLVTGas~GIG~AiA~~L-A~g~GA~Vv~~~~~~~~~~~~~~~~gwyn~~~~~~~~~~~G~~a~~i~~Dv  118 (405)
T 3zu3_A           40 EGPIANGPKRVLVIGASTGYGLAARITA-AFGCGADTLGVFFERPGEEGKPGTSGWYNSAAFHKFAAQKGLYAKSINGDA  118 (405)
T ss_dssp             HCCCTTCCSEEEEESCSSHHHHHHHHHH-HHHHCCEEEEEECCCCCBTTBCCCHHHHHHHHHHHHHHHTTCCEEEEESCT
T ss_pred             cCCcCCCCCEEEEeCcchHHHHHHHHHH-HHhcCCEEEEEeCCchhhhhhcccccchhHHHHHHHHHhcCCceEEEECCC
Confidence            3444 56888999999999999977766 44 699999988754431                23455565433 2  22


Q ss_pred             CCchhHHHHHHHHhC-CCcccEEEECCCC
Q psy1959         215 TNEKSLVNKVLEVSG-GKYANVVFEAVGG  242 (296)
Q Consensus       215 ~~~~~~~~~i~~~~~-~~g~d~vld~~g~  242 (296)
                      .+.....+.+.+... -..+|+++++.|.
T Consensus       119 td~~~v~~~v~~i~~~~G~IDiLVNNAG~  147 (405)
T 3zu3_A          119 FSDEIKQLTIDAIKQDLGQVDQVIYSLAS  147 (405)
T ss_dssp             TSHHHHHHHHHHHHHHTSCEEEEEECCCC
T ss_pred             CCHHHHHHHHHHHHHHcCCCCEEEEcCcc
Confidence            332333333333221 1369999999885

>4e3z_A Putative oxidoreductase protein; PSI-biology, structural genomics, protein structure initiati nysgrc,oxidoreductase; 2.00A {Rhizobium etli}

Probab=96.33  E-value=0.0088  Score=51.53  Aligned_cols=83  Identities=18%  Similarity=0.180  Sum_probs=51.7

Q ss_pred             CCCCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEE-eCCcchHHHH----HhcCCcEEE---EcCCchhHHHHHHHHhC-
Q psy1959         159 LKEKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGV-CNSEDKTDLI----RQKGAWAAL---TFTNEKSLVNKVLEVSG-  229 (296)
Q Consensus       159 ~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~-~~~~~~~~~~----~~~g~~~~~---~~~~~~~~~~~i~~~~~-  229 (296)
                      ..++++++|+|++|++|.++++.+ ...|++|+++ .+++++.+.+    ++.+....+   +..+..+..+.+.+... 
T Consensus        23 m~~~k~vlITGas~gIG~a~a~~l-~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~  101 (272)
T 4e3z_A           23 MSDTPVVLVTGGSRGIGAAVCRLA-ARQGWRVGVNYAANREAADAVVAAITESGGEAVAIPGDVGNAADIAAMFSAVDRQ  101 (272)
T ss_dssp             -CCSCEEEETTTTSHHHHHHHHHH-HHTTCEEEEEESSCHHHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             ccCCCEEEEECCCchHHHHHHHHH-HHCCCEEEEEcCCChhHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHh
Confidence            456789999999999999988877 4579999777 5666555443    233433322   23332333333333211 


Q ss_pred             CCcccEEEECCCC
Q psy1959         230 GKYANVVFEAVGG  242 (296)
Q Consensus       230 ~~g~d~vld~~g~  242 (296)
                      -..+|+++++.|.
T Consensus       102 ~g~id~li~nAg~  114 (272)
T 4e3z_A          102 FGRLDGLVNNAGI  114 (272)
T ss_dssp             HSCCCEEEECCCC
T ss_pred             CCCCCEEEECCCC
Confidence            1269999999884

>1e7w_A Pteridine reductase; dihydrofolate reductase, shortchain dehydrogenase, methotrexate resistance, oxidoreductase; HET: NDP MTX; 1.75A {Leishmania major} SCOP: c.2.1.2 PDB: 1w0c_A* 1e92_A* 2bf7_A* 2bfa_A* 2bfm_A* 2bfo_A* 2bfp_A* 2p8k_A* 3h4v_A* 2xox_A 1p33_A*

Probab=96.31  E-value=0.0062  Score=53.21  Aligned_cols=42  Identities=19%  Similarity=0.103  Sum_probs=35.2

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEe-CCcchHHHH
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVC-NSEDKTDLI  203 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~-~~~~~~~~~  203 (296)
                      .+++++|+|+++++|.++++.+ ...|++|++++ +++++.+.+
T Consensus         8 ~~k~~lVTGas~GIG~aia~~l-a~~G~~V~~~~~r~~~~~~~~   50 (291)
T 1e7w_A            8 TVPVALVTGAAKRLGRSIAEGL-HAEGYAVCLHYHRSAAEANAL   50 (291)
T ss_dssp             CCCEEEETTCSSHHHHHHHHHH-HHTTCEEEEEESSCHHHHHHH
T ss_pred             CCCEEEEECCCchHHHHHHHHH-HHCCCeEEEEcCCCHHHHHHH
Confidence            5789999999999999988877 45799999999 887766544

>2qhx_A Pteridine reductase 1; oxidoreductase, short-chain dehydrogenase/reductase, trypanosomatid, pterin salvage, drug resistance; HET: NAP FE1; 2.61A {Leishmania major} SCOP: c.2.1.2

Probab=96.29  E-value=0.013  Score=52.14  Aligned_cols=42  Identities=19%  Similarity=0.103  Sum_probs=35.4

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEe-CCcchHHHH
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVC-NSEDKTDLI  203 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~-~~~~~~~~~  203 (296)
                      .+++++|+|+++++|.++++.+ ...|++|++++ +++++.+.+
T Consensus        45 ~~k~~lVTGas~GIG~aia~~L-a~~G~~Vv~~~~r~~~~~~~~   87 (328)
T 2qhx_A           45 TVPVALVTGAAKRLGRSIAEGL-HAEGYAVCLHYHRSAAEANAL   87 (328)
T ss_dssp             CCCEEEETTCSSHHHHHHHHHH-HHTTCEEEEEESSCHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHH-HHCCCEEEEEcCCCHHHHHHH
Confidence            5789999999999999988877 45799999999 887766544

>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A*

Probab=96.29  E-value=0.0093  Score=48.47  Aligned_cols=74  Identities=14%  Similarity=0.080  Sum_probs=49.3

Q ss_pred             cEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCcEEEEcCCchhHHHHHHHHhCCCcccEEEECCCC
Q psy1959         163 QTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNKVLEVSGGKYANVVFEAVGG  242 (296)
Q Consensus       163 ~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~g~d~vld~~g~  242 (296)
                      .+|+|+|++|.+|..+++.+ ...|.+|+++++++++...+...+. ..+..+- .+ .+.+.+...  ++|+++.+.|.
T Consensus         4 ~~ilVtGatG~iG~~l~~~l-~~~g~~V~~~~r~~~~~~~~~~~~~-~~~~~D~-~~-~~~~~~~~~--~~d~vi~~a~~   77 (206)
T 1hdo_A            4 KKIAIFGATGQTGLTTLAQA-VQAGYEVTVLVRDSSRLPSEGPRPA-HVVVGDV-LQ-AADVDKTVA--GQDAVIVLLGT   77 (206)
T ss_dssp             CEEEEESTTSHHHHHHHHHH-HHTTCEEEEEESCGGGSCSSSCCCS-EEEESCT-TS-HHHHHHHHT--TCSEEEECCCC
T ss_pred             CEEEEEcCCcHHHHHHHHHH-HHCCCeEEEEEeChhhcccccCCce-EEEEecC-CC-HHHHHHHHc--CCCEEEECccC
Confidence            68999999999999988888 4469999999998776543211122 2222211 11 233444442  68999999985

>3kzv_A Uncharacterized oxidoreductase YIR035C; cytoplasmic protein, unknown function, structural genomics, MCSG, protein structure initiative; 2.00A {Saccharomyces cerevisiae}

Probab=96.26  E-value=0.0091  Score=50.94  Aligned_cols=81  Identities=21%  Similarity=0.250  Sum_probs=52.0

Q ss_pred             CcEEEEEcCCCcHHHHHHHHHHHhC-CCEEEEEeCCcchHHHHHh-cCCcEEE---EcCCchhHHHHHHHHhC-CCcccE
Q psy1959         162 KQTVLVTAAGGGLGLAAVDMATKIY-KAKVIGVCNSEDKTDLIRQ-KGAWAAL---TFTNEKSLVNKVLEVSG-GKYANV  235 (296)
Q Consensus       162 g~~vlI~Ga~g~vG~aa~~la~~~~-g~~Vi~~~~~~~~~~~~~~-~g~~~~~---~~~~~~~~~~~i~~~~~-~~g~d~  235 (296)
                      |++++|+|+++++|.+.++.+.+.. +++|+.+++++++.+.+.+ ++....+   +..+..+..+.+.+... ...+|+
T Consensus         2 gk~~lVTGas~GIG~aia~~l~~~g~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~id~   81 (254)
T 3kzv_A            2 GKVILVTGVSRGIGKSIVDVLFSLDKDTVVYGVARSEAPLKKLKEKYGDRFFYVVGDITEDSVLKQLVNAAVKGHGKIDS   81 (254)
T ss_dssp             CCEEEECSTTSHHHHHHHHHHHHHCSSCEEEEEESCHHHHHHHHHHHGGGEEEEESCTTSHHHHHHHHHHHHHHHSCCCE
T ss_pred             CCEEEEECCCchHHHHHHHHHHhcCCCeEEEEecCCHHHHHHHHHHhCCceEEEECCCCCHHHHHHHHHHHHHhcCCccE
Confidence            5789999999999999776552432 5799999999888776654 3433322   33332333333332211 127999


Q ss_pred             EEECCCC
Q psy1959         236 VFEAVGG  242 (296)
Q Consensus       236 vld~~g~  242 (296)
                      ++++.|.
T Consensus        82 lvnnAg~   88 (254)
T 3kzv_A           82 LVANAGV   88 (254)
T ss_dssp             EEEECCC
T ss_pred             EEECCcc
Confidence            9999884

>1rpn_A GDP-mannose 4,6-dehydratase; short-chain dehydrogenase/reductase, rossmann fold, lyase; HET: NDP GDP; 2.15A {Pseudomonas aeruginosa} SCOP: c.2.1.2

Probab=96.25  E-value=0.0096  Score=52.53  Aligned_cols=79  Identities=14%  Similarity=0.085  Sum_probs=48.5

Q ss_pred             CCCCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchH--HHHHhc--CCc-EEE--EcCCchhHHHHHHHHhCCC
Q psy1959         159 LKEKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKT--DLIRQK--GAW-AAL--TFTNEKSLVNKVLEVSGGK  231 (296)
Q Consensus       159 ~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~--~~~~~~--g~~-~~~--~~~~~~~~~~~i~~~~~~~  231 (296)
                      .+++.+|||+|++|.+|..+++.+ ...|.+|++++++.++.  ..+..+  +.. ..+  +..+...+.+.+...    
T Consensus        11 ~~~~~~vlVTGatG~iG~~l~~~L-~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~----   85 (335)
T 1rpn_A           11 GSMTRSALVTGITGQDGAYLAKLL-LEKGYRVHGLVARRSSDTRWRLRELGIEGDIQYEDGDMADACSVQRAVIKA----   85 (335)
T ss_dssp             ----CEEEEETTTSHHHHHHHHHH-HHTTCEEEEEECCCSSCCCHHHHHTTCGGGEEEEECCTTCHHHHHHHHHHH----
T ss_pred             cccCCeEEEECCCChHHHHHHHHH-HHCCCeEEEEeCCCccccccchhhccccCceEEEECCCCCHHHHHHHHHHc----
Confidence            467899999999999999988887 44699999999876542  233332  111 122  223312333333222    


Q ss_pred             cccEEEECCCC
Q psy1959         232 YANVVFEAVGG  242 (296)
Q Consensus       232 g~d~vld~~g~  242 (296)
                      .+|+||.+.+.
T Consensus        86 ~~d~Vih~A~~   96 (335)
T 1rpn_A           86 QPQEVYNLAAQ   96 (335)
T ss_dssp             CCSEEEECCSC
T ss_pred             CCCEEEECccc
Confidence            57999999885

>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis}

Probab=96.24  E-value=0.028  Score=49.30  Aligned_cols=87  Identities=15%  Similarity=0.080  Sum_probs=62.4

Q ss_pred             CCCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCcEEEEcCCchhHHHHHHHHhCCCcccEEEEC
Q psy1959         160 KEKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNKVLEVSGGKYANVVFEA  239 (296)
Q Consensus       160 ~~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~g~d~vld~  239 (296)
                      -+|++++|+|. |.+|+++++.+ +..|++|++.+++.++.+.+.++|.. .+..   .++    .+..  ...|+++.+
T Consensus       155 l~g~~v~IiG~-G~iG~~~a~~l-~~~G~~V~~~d~~~~~~~~~~~~g~~-~~~~---~~l----~~~l--~~aDvVi~~  222 (300)
T 2rir_A          155 IHGSQVAVLGL-GRTGMTIARTF-AALGANVKVGARSSAHLARITEMGLV-PFHT---DEL----KEHV--KDIDICINT  222 (300)
T ss_dssp             STTSEEEEECC-SHHHHHHHHHH-HHTTCEEEEEESSHHHHHHHHHTTCE-EEEG---GGH----HHHS--TTCSEEEEC
T ss_pred             CCCCEEEEEcc-cHHHHHHHHHH-HHCCCEEEEEECCHHHHHHHHHCCCe-EEch---hhH----HHHh--hCCCEEEEC
Confidence            36899999997 99999999999 56899999999998887777777763 2222   222    2222  378999999


Q ss_pred             CCCccH-HHHHHHhhccCceE
Q psy1959         240 VGGEDK-TDLIRQKGAWAALT  259 (296)
Q Consensus       240 ~g~~~~-~~~~~~lg~~~g~~  259 (296)
                      +....+ ...+..+ ++++.+
T Consensus       223 ~p~~~i~~~~~~~m-k~g~~l  242 (300)
T 2rir_A          223 IPSMILNQTVLSSM-TPKTLI  242 (300)
T ss_dssp             CSSCCBCHHHHTTS-CTTCEE
T ss_pred             CChhhhCHHHHHhC-CCCCEE
Confidence            987433 3455666 555443

>3ezl_A Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA reductase, oxidoreductase, structural genomics; HET: P4C; 2.25A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0

Probab=96.24  E-value=0.0081  Score=51.13  Aligned_cols=83  Identities=14%  Similarity=0.097  Sum_probs=49.9

Q ss_pred             CCCCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEe-CCcchHH----HHHhcCCcEE-E--EcCCchhHHHHHHHHhC-
Q psy1959         159 LKEKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVC-NSEDKTD----LIRQKGAWAA-L--TFTNEKSLVNKVLEVSG-  229 (296)
Q Consensus       159 ~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~-~~~~~~~----~~~~~g~~~~-~--~~~~~~~~~~~i~~~~~-  229 (296)
                      ..++++++|+|+++++|.+.++.+ ...|++|++++ ++.++..    .+++.+.... +  +..+..+..+.+.+... 
T Consensus        10 ~~~~k~vlITGas~giG~~ia~~l-~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~   88 (256)
T 3ezl_A           10 VMSQRIAYVTGGMGGIGTSICQRL-HKDGFRVVAGCGPNSPRRVKWLEDQKALGFDFYASEGNVGDWDSTKQAFDKVKAE   88 (256)
T ss_dssp             ---CEEEEETTTTSHHHHHHHHHH-HHTTEEEEEEECTTCSSHHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEECCCChHHHHHHHHH-HHCCCEEEEEeCCCHHHHHHHHHHHHhcCCeeEEEecCCCCHHHHHHHHHHHHHh
Confidence            347899999999999999977777 44799999887 4444432    2333443322 2  23332333333333211 


Q ss_pred             CCcccEEEECCCC
Q psy1959         230 GKYANVVFEAVGG  242 (296)
Q Consensus       230 ~~g~d~vld~~g~  242 (296)
                      ...+|+++++.|.
T Consensus        89 ~g~id~lv~~Ag~  101 (256)
T 3ezl_A           89 VGEIDVLVNNAGI  101 (256)
T ss_dssp             TCCEEEEEECCCC
T ss_pred             cCCCCEEEECCCC
Confidence            1269999999884

>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron}

Probab=96.23  E-value=0.0071  Score=50.26  Aligned_cols=73  Identities=21%  Similarity=0.204  Sum_probs=49.3

Q ss_pred             cEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCcEEEEcCCchhHHHHHHHHhCCCcccEEEECCCC
Q psy1959         163 QTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNKVLEVSGGKYANVVFEAVGG  242 (296)
Q Consensus       163 ~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~g~d~vld~~g~  242 (296)
                      .+|+|+|++|.+|..+++.+ ...|.+|+++++++++...+. .+. ..+.. +..+ .+.+.+...  ++|++|.+.|.
T Consensus         5 ~~ilItGatG~iG~~l~~~L-~~~g~~V~~~~r~~~~~~~~~-~~~-~~~~~-Dl~d-~~~~~~~~~--~~d~vi~~a~~   77 (227)
T 3dhn_A            5 KKIVLIGASGFVGSALLNEA-LNRGFEVTAVVRHPEKIKIEN-EHL-KVKKA-DVSS-LDEVCEVCK--GADAVISAFNP   77 (227)
T ss_dssp             CEEEEETCCHHHHHHHHHHH-HTTTCEEEEECSCGGGCCCCC-TTE-EEECC-CTTC-HHHHHHHHT--TCSEEEECCCC
T ss_pred             CEEEEEcCCchHHHHHHHHH-HHCCCEEEEEEcCcccchhcc-Cce-EEEEe-cCCC-HHHHHHHhc--CCCEEEEeCcC
Confidence            58999999999999999888 557999999999877654321 111 12211 1111 234444443  69999999885

>1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A

Probab=96.22  E-value=0.0084  Score=52.92  Aligned_cols=76  Identities=24%  Similarity=0.118  Sum_probs=51.0

Q ss_pred             CCCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhc-----CCcE-EE---EcCCchhHHHHHHHHhCC
Q psy1959         160 KEKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQK-----GAWA-AL---TFTNEKSLVNKVLEVSGG  230 (296)
Q Consensus       160 ~~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~-----g~~~-~~---~~~~~~~~~~~i~~~~~~  230 (296)
                      -++.+|||+|++|.+|..+++.+ ...|.+|++++++.++.+.+.+.     +... .+   +..+.    +.+.++.  
T Consensus         9 ~~~~~vlVTGatG~iG~~l~~~L-~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~----~~~~~~~--   81 (342)
T 1y1p_A            9 PEGSLVLVTGANGFVASHVVEQL-LEHGYKVRGTARSASKLANLQKRWDAKYPGRFETAVVEDMLKQ----GAYDEVI--   81 (342)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHH-HHTTCEEEEEESSHHHHHHHHHHHHHHSTTTEEEEECSCTTST----TTTTTTT--
T ss_pred             CCCCEEEEECCccHHHHHHHHHH-HHCCCEEEEEeCCcccHHHHHHHhhccCCCceEEEEecCCcCh----HHHHHHH--
Confidence            46789999999999999988877 44799999999987776554331     2222 22   22221    1222322  


Q ss_pred             CcccEEEECCCC
Q psy1959         231 KYANVVFEAVGG  242 (296)
Q Consensus       231 ~g~d~vld~~g~  242 (296)
                      +++|++|.+.+.
T Consensus        82 ~~~d~vih~A~~   93 (342)
T 1y1p_A           82 KGAAGVAHIASV   93 (342)
T ss_dssp             TTCSEEEECCCC
T ss_pred             cCCCEEEEeCCC
Confidence            279999999874

>2z1m_A GDP-D-mannose dehydratase; short-chain dehydrogenase/reductase, lyase, structural genom NPPSFA; HET: NDP GDP; 2.00A {Aquifex aeolicus} PDB: 2z95_A*

Probab=96.22  E-value=0.011  Score=52.22  Aligned_cols=76  Identities=12%  Similarity=0.125  Sum_probs=49.6

Q ss_pred             CcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchH--HHHHhcCC--cE-EE--EcCCchhHHHHHHHHhCCCccc
Q psy1959         162 KQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKT--DLIRQKGA--WA-AL--TFTNEKSLVNKVLEVSGGKYAN  234 (296)
Q Consensus       162 g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~--~~~~~~g~--~~-~~--~~~~~~~~~~~i~~~~~~~g~d  234 (296)
                      +.+|+|+|++|.+|..+++.+ ...|.+|++++++.++.  +.+++++.  .. .+  +..+...+.+.+...    .+|
T Consensus         3 ~~~vlVtGatG~iG~~l~~~L-~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~----~~d   77 (345)
T 2z1m_A            3 GKRALITGIRGQDGAYLAKLL-LEKGYEVYGADRRSGEFASWRLKELGIENDVKIIHMDLLEFSNIIRTIEKV----QPD   77 (345)
T ss_dssp             CCEEEEETTTSHHHHHHHHHH-HHTTCEEEEECSCCSTTTTHHHHHTTCTTTEEECCCCTTCHHHHHHHHHHH----CCS
T ss_pred             CCEEEEECCCChHHHHHHHHH-HHCCCEEEEEECCCcccccccHhhccccCceeEEECCCCCHHHHHHHHHhc----CCC
Confidence            578999999999999988877 44699999999877653  24444421  11 11  222312333333222    579


Q ss_pred             EEEECCCC
Q psy1959         235 VVFEAVGG  242 (296)
Q Consensus       235 ~vld~~g~  242 (296)
                      ++|.+.|.
T Consensus        78 ~vih~A~~   85 (345)
T 2z1m_A           78 EVYNLAAQ   85 (345)
T ss_dssp             EEEECCCC
T ss_pred             EEEECCCC
Confidence            99999984

>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*

Probab=96.21  E-value=0.0063  Score=46.59  Aligned_cols=77  Identities=19%  Similarity=0.239  Sum_probs=53.5

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCcEEEEcCCchhHHHHHHHHhCCCcccEEEECC
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNKVLEVSGGKYANVVFEAV  240 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~g~d~vld~~  240 (296)
                      ++++++|.|+ |.+|...++.+ ...|.+|+++++++++.+.+++.+.. .+..+. .+ .+.+.+. .-.++|+++.++
T Consensus         5 ~~~~v~I~G~-G~iG~~~a~~l-~~~g~~v~~~d~~~~~~~~~~~~~~~-~~~~d~-~~-~~~l~~~-~~~~~d~vi~~~   78 (144)
T 2hmt_A            5 KNKQFAVIGL-GRFGGSIVKEL-HRMGHEVLAVDINEEKVNAYASYATH-AVIANA-TE-ENELLSL-GIRNFEYVIVAI   78 (144)
T ss_dssp             -CCSEEEECC-SHHHHHHHHHH-HHTTCCCEEEESCHHHHHTTTTTCSE-EEECCT-TC-HHHHHTT-TGGGCSEEEECC
T ss_pred             cCCcEEEECC-CHHHHHHHHHH-HHCCCEEEEEeCCHHHHHHHHHhCCE-EEEeCC-CC-HHHHHhc-CCCCCCEEEECC
Confidence            3567999998 99999999998 45789999999988887777666653 232221 12 2233332 224799999999


Q ss_pred             CCc
Q psy1959         241 GGE  243 (296)
Q Consensus       241 g~~  243 (296)
                      +..
T Consensus        79 ~~~   81 (144)
T 2hmt_A           79 GAN   81 (144)
T ss_dssp             CSC
T ss_pred             CCc
Confidence            974

>3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.60A {Staphylococcus aureus subsp}

Probab=96.19  E-value=0.0057  Score=52.92  Aligned_cols=73  Identities=16%  Similarity=0.049  Sum_probs=51.6

Q ss_pred             EEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCcEE-EEcCCchhHHHHHHHHhCCCcccEEEECCCC
Q psy1959         164 TVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAA-LTFTNEKSLVNKVLEVSGGKYANVVFEAVGG  242 (296)
Q Consensus       164 ~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~i~~~~~~~g~d~vld~~g~  242 (296)
                      +|+|+|++|.+|..+++.+.+..|.+|++++++.++...+...+...+ .+..+    .+.+.+..  +++|++|.+.+.
T Consensus         2 ~ilVtGatG~iG~~l~~~L~~~~g~~V~~~~R~~~~~~~~~~~~v~~~~~D~~d----~~~l~~~~--~~~d~vi~~a~~   75 (289)
T 3e48_A            2 NIMLTGATGHLGTHITNQAIANHIDHFHIGVRNVEKVPDDWRGKVSVRQLDYFN----QESMVEAF--KGMDTVVFIPSI   75 (289)
T ss_dssp             CEEEETTTSHHHHHHHHHHHHTTCTTEEEEESSGGGSCGGGBTTBEEEECCTTC----HHHHHHHT--TTCSEEEECCCC
T ss_pred             EEEEEcCCchHHHHHHHHHhhCCCCcEEEEECCHHHHHHhhhCCCEEEEcCCCC----HHHHHHHH--hCCCEEEEeCCC
Confidence            589999999999998888733238999999998887665544454332 23333    23444544  379999999885

>3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A*

Probab=96.18  E-value=0.043  Score=48.61  Aligned_cols=77  Identities=16%  Similarity=0.142  Sum_probs=50.4

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcch----HHHHHhc------CCcEEEEcCCchhHHHHHHHHhCC
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDK----TDLIRQK------GAWAALTFTNEKSLVNKVLEVSGG  230 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~----~~~~~~~------g~~~~~~~~~~~~~~~~i~~~~~~  230 (296)
                      .+.+|||+|++|.+|..+++.+ ...|.+|++++++..+    .+.+...      .-...+..+- .+ .+.+.++.. 
T Consensus        24 ~~~~vlVtGatG~iG~~l~~~L-~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl-~d-~~~~~~~~~-   99 (351)
T 3ruf_A           24 SPKTWLITGVAGFIGSNLLEKL-LKLNQVVIGLDNFSTGHQYNLDEVKTLVSTEQWSRFCFIEGDI-RD-LTTCEQVMK-   99 (351)
T ss_dssp             SCCEEEEETTTSHHHHHHHHHH-HHTTCEEEEEECCSSCCHHHHHHHHHTSCHHHHTTEEEEECCT-TC-HHHHHHHTT-
T ss_pred             CCCeEEEECCCcHHHHHHHHHH-HHCCCEEEEEeCCCCCchhhhhhhhhccccccCCceEEEEccC-CC-HHHHHHHhc-
Confidence            4679999999999999998888 4579999999985542    3333332      1112222211 11 234455543 


Q ss_pred             CcccEEEECCCC
Q psy1959         231 KYANVVFEAVGG  242 (296)
Q Consensus       231 ~g~d~vld~~g~  242 (296)
                       ++|+||.+.+.
T Consensus       100 -~~d~Vih~A~~  110 (351)
T 3ruf_A          100 -GVDHVLHQAAL  110 (351)
T ss_dssp             -TCSEEEECCCC
T ss_pred             -CCCEEEECCcc
Confidence             79999999984

>3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A*

Probab=96.18  E-value=0.0052  Score=54.82  Aligned_cols=77  Identities=21%  Similarity=0.265  Sum_probs=51.2

Q ss_pred             CcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCc----chHHHH---HhcCCcEE-EEcCCchhHHHHHHHHhCCCcc
Q psy1959         162 KQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSE----DKTDLI---RQKGAWAA-LTFTNEKSLVNKVLEVSGGKYA  233 (296)
Q Consensus       162 g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~----~~~~~~---~~~g~~~~-~~~~~~~~~~~~i~~~~~~~g~  233 (296)
                      ..+|+|+|++|.+|..+++.+ ...|.+|++++++.    ++.+.+   ...++..+ .+..+..++.+.+.+    .++
T Consensus        10 ~~~IlVtGatG~iG~~l~~~L-~~~g~~V~~l~R~~~~~~~~~~~~~~l~~~~v~~~~~Dl~d~~~l~~~~~~----~~~   84 (346)
T 3i6i_A           10 KGRVLIAGATGFIGQFVATAS-LDAHRPTYILARPGPRSPSKAKIFKALEDKGAIIVYGLINEQEAMEKILKE----HEI   84 (346)
T ss_dssp             -CCEEEECTTSHHHHHHHHHH-HHTTCCEEEEECSSCCCHHHHHHHHHHHHTTCEEEECCTTCHHHHHHHHHH----TTC
T ss_pred             CCeEEEECCCcHHHHHHHHHH-HHCCCCEEEEECCCCCChhHHHHHHHHHhCCcEEEEeecCCHHHHHHHHhh----CCC
Confidence            357999999999999988888 44689999999976    444433   33455432 233332333333322    379


Q ss_pred             cEEEECCCCc
Q psy1959         234 NVVFEAVGGE  243 (296)
Q Consensus       234 d~vld~~g~~  243 (296)
                      |+||.+.+..
T Consensus        85 d~Vi~~a~~~   94 (346)
T 3i6i_A           85 DIVVSTVGGE   94 (346)
T ss_dssp             CEEEECCCGG
T ss_pred             CEEEECCchh
Confidence            9999999963

>1uay_A Type II 3-hydroxyacyl-COA dehydrogenase; beta oxidation, fatty acid, structural genomi structural genomics/proteomics initiative, RSGI; HET: ADN; 1.40A {Thermus thermophilus} SCOP: c.2.1.2

Probab=96.18  E-value=0.0047  Score=51.84  Aligned_cols=75  Identities=21%  Similarity=0.190  Sum_probs=47.5

Q ss_pred             CcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCcEEEEcCCchhHHHHHHHHhCCCcccEEEECCC
Q psy1959         162 KQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNKVLEVSGGKYANVVFEAVG  241 (296)
Q Consensus       162 g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~g~d~vld~~g  241 (296)
                      +++++|+|++|++|.+.++.+ ...|++|++++++++ .+   +. .....+..+..++.+.+.+.....++|+++++.|
T Consensus         2 ~k~vlVtGasggiG~~la~~l-~~~G~~V~~~~r~~~-~~---~~-~~~~~D~~~~~~~~~~~~~~~~~~~~d~li~~ag   75 (242)
T 1uay_A            2 ERSALVTGGASGLGRAAALAL-KARGYRVVVLDLRRE-GE---DL-IYVEGDVTREEDVRRAVARAQEEAPLFAVVSAAG   75 (242)
T ss_dssp             CCEEEEETTTSHHHHHHHHHH-HHHTCEEEEEESSCC-SS---SS-EEEECCTTCHHHHHHHHHHHHHHSCEEEEEECCC
T ss_pred             CCEEEEeCCCChHHHHHHHHH-HHCCCEEEEEccCcc-cc---ce-EEEeCCCCCHHHHHHHHHHHHhhCCceEEEEccc
Confidence            578999999999999988777 346999999998765 11   11 0011233332333333333311136899999987


Q ss_pred             C
Q psy1959         242 G  242 (296)
Q Consensus       242 ~  242 (296)
                      .
T Consensus        76 ~   76 (242)
T 1uay_A           76 V   76 (242)
T ss_dssp             C
T ss_pred             c
Confidence            4

>3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus}

Probab=96.14  E-value=0.021  Score=49.91  Aligned_cols=70  Identities=16%  Similarity=0.089  Sum_probs=48.5

Q ss_pred             cEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCcEEEEcCCchhHHHHHHHHhCCCcccEEEECCCC
Q psy1959         163 QTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNKVLEVSGGKYANVVFEAVGG  242 (296)
Q Consensus       163 ~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~g~d~vld~~g~  242 (296)
                      .+|+|+|++|.+|..+++.+ ...|.+|+++++++.+.+ +.  +. ..+.. + .. .+.+.++..  ++|+||.+.+.
T Consensus         3 ~~vlVtGatG~iG~~l~~~L-~~~g~~V~~~~r~~~~~~-~~--~~-~~~~~-D-l~-~~~~~~~~~--~~d~Vih~a~~   72 (311)
T 3m2p_A            3 LKIAVTGGTGFLGQYVVESI-KNDGNTPIILTRSIGNKA-IN--DY-EYRVS-D-YT-LEDLINQLN--DVDAVVHLAAT   72 (311)
T ss_dssp             CEEEEETTTSHHHHHHHHHH-HHTTCEEEEEESCCC--------CC-EEEEC-C-CC-HHHHHHHTT--TCSEEEECCCC
T ss_pred             CEEEEECCCcHHHHHHHHHH-HhCCCEEEEEeCCCCccc-CC--ce-EEEEc-c-cc-HHHHHHhhc--CCCEEEEcccc
Confidence            58999999999999988888 457999999999855544 43  33 22222 2 23 556666653  89999999885

>3n58_A Adenosylhomocysteinase; ssgcid, hydrolase, structural genomics, seattle structural G center for infectious disease; HET: ADN NAD; 2.39A {Brucella melitensis biovar abortus}

Probab=96.13  E-value=0.029  Score=51.99  Aligned_cols=85  Identities=14%  Similarity=0.087  Sum_probs=63.1

Q ss_pred             CCCCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCcEEEEcCCchhHHHHHHHHhCCCcccEEEE
Q psy1959         159 LKEKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNKVLEVSGGKYANVVFE  238 (296)
Q Consensus       159 ~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~g~d~vld  238 (296)
                      .-.|++++|.|. |.+|+.+++.+ +.+|++|++.++++.+...+...|... .      ++.+    +.  ...|+++.
T Consensus       244 ~L~GKTVgVIG~-G~IGr~vA~~l-rafGa~Viv~d~dp~~a~~A~~~G~~v-v------~LeE----lL--~~ADIVv~  308 (464)
T 3n58_A          244 MMAGKVAVVCGY-GDVGKGSAQSL-AGAGARVKVTEVDPICALQAAMDGFEV-V------TLDD----AA--STADIVVT  308 (464)
T ss_dssp             CCTTCEEEEECC-SHHHHHHHHHH-HHTTCEEEEECSSHHHHHHHHHTTCEE-C------CHHH----HG--GGCSEEEE
T ss_pred             cccCCEEEEECc-CHHHHHHHHHH-HHCCCEEEEEeCCcchhhHHHhcCcee-c------cHHH----HH--hhCCEEEE
Confidence            458999999997 99999999999 679999999998777665566666532 1      1222    22  26899999


Q ss_pred             CCCCc-cH-HHHHHHhhccCceE
Q psy1959         239 AVGGE-DK-TDLIRQKGAWAALT  259 (296)
Q Consensus       239 ~~g~~-~~-~~~~~~lg~~~g~~  259 (296)
                      +.|.. .+ ...+..| +++..+
T Consensus       309 atgt~~lI~~e~l~~M-K~GAIL  330 (464)
T 3n58_A          309 TTGNKDVITIDHMRKM-KDMCIV  330 (464)
T ss_dssp             CCSSSSSBCHHHHHHS-CTTEEE
T ss_pred             CCCCccccCHHHHhcC-CCCeEE
Confidence            99874 43 5788888 666655

>2et6_A (3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-oxidation, peroxisome, SDR, oxido; 2.22A {Candida tropicalis}

Probab=96.12  E-value=0.014  Score=56.51  Aligned_cols=79  Identities=25%  Similarity=0.293  Sum_probs=51.9

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCc---------chHH----HHHhcCCcEEEEcCCchh---HHHHH
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSE---------DKTD----LIRQKGAWAALTFTNEKS---LVNKV  224 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~---------~~~~----~~~~~g~~~~~~~~~~~~---~~~~i  224 (296)
                      .|++++|+|+++++|++.++.+ ...|++|++.+++.         ++.+    .+++.|...+.+..+..+   +.+.+
T Consensus         7 ~gkvalVTGas~GIG~a~A~~l-a~~Ga~Vv~~~~~~~~~~~gr~~~~~~~~~~~i~~~g~~~~~d~~d~~~~~~~v~~~   85 (604)
T 2et6_A            7 KDKVVIITGAGGGLGKYYSLEF-AKLGAKVVVNDLGGALNGQGGNSKAADVVVDEIVKNGGVAVADYNNVLDGDKIVETA   85 (604)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHH-HHTTCEEEEECC-----------CHHHHHHHHHHHTTCEEEEECCCTTCHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHH-HHcCCEEEEEeCCccccccccchHHHHHHHHHHHhcCCeEEEEcCCHHHHHHHHHHH
Confidence            5789999999999999977777 45799999987654         3333    233345444555554333   33333


Q ss_pred             HHHhCCCcccEEEECCCC
Q psy1959         225 LEVSGGKYANVVFEAVGG  242 (296)
Q Consensus       225 ~~~~~~~g~d~vld~~g~  242 (296)
                      .+..+  .+|+++++.|.
T Consensus        86 ~~~~G--~iDiLVnNAGi  101 (604)
T 2et6_A           86 VKNFG--TVHVIINNAGI  101 (604)
T ss_dssp             HHHHS--CCCEEEECCCC
T ss_pred             HHHcC--CCCEEEECCCC
Confidence            33332  69999999984

>2wm3_A NMRA-like family domain containing protein 1; unknown function; HET: NAP NFL; 1.85A {Homo sapiens} PDB: 2wmd_A* 2exx_A* 3dxf_A 3e5m_A

Probab=96.10  E-value=0.023  Score=49.32  Aligned_cols=74  Identities=19%  Similarity=0.045  Sum_probs=50.8

Q ss_pred             CcEEEEEcCCCcHHHHHHHHHHHhCC-CEEEEEeCCcchH--HHHHhcCCcEE-EEcCCchhHHHHHHHHhCCCcccEEE
Q psy1959         162 KQTVLVTAAGGGLGLAAVDMATKIYK-AKVIGVCNSEDKT--DLIRQKGAWAA-LTFTNEKSLVNKVLEVSGGKYANVVF  237 (296)
Q Consensus       162 g~~vlI~Ga~g~vG~aa~~la~~~~g-~~Vi~~~~~~~~~--~~~~~~g~~~~-~~~~~~~~~~~~i~~~~~~~g~d~vl  237 (296)
                      .++|+|+|++|.+|..+++.+.+ .| .+|++++++.++.  +.+...++..+ .+..+    .+.+.+...  ++|.+|
T Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~-~g~~~V~~~~R~~~~~~~~~l~~~~~~~~~~D~~d----~~~l~~~~~--~~d~vi   77 (299)
T 2wm3_A            5 KKLVVVFGGTGAQGGSVARTLLE-DGTFKVRVVTRNPRKKAAKELRLQGAEVVQGDQDD----QVIMELALN--GAYATF   77 (299)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHH-HCSSEEEEEESCTTSHHHHHHHHTTCEEEECCTTC----HHHHHHHHT--TCSEEE
T ss_pred             CCEEEEECCCchHHHHHHHHHHh-cCCceEEEEEcCCCCHHHHHHHHCCCEEEEecCCC----HHHHHHHHh--cCCEEE
Confidence            47899999999999998887734 47 8999999987664  33444455332 23333    233444443  689999


Q ss_pred             ECCCC
Q psy1959         238 EAVGG  242 (296)
Q Consensus       238 d~~g~  242 (296)
                      .+.+.
T Consensus        78 ~~a~~   82 (299)
T 2wm3_A           78 IVTNY   82 (299)
T ss_dssp             ECCCH
T ss_pred             EeCCC
Confidence            99874

>4e4y_A Short chain dehydrogenase family protein; structural genomics, the center for structural genomics of I diseases, csgid, niaid; 1.80A {Francisella tularensis subsp}

Probab=96.10  E-value=0.0088  Score=50.65  Aligned_cols=77  Identities=17%  Similarity=0.261  Sum_probs=49.4

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcc-hHHHHHhcCCcEEEEcCCchhHHHHHHHHhCCCcccEEEEC
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSED-KTDLIRQKGAWAALTFTNEKSLVNKVLEVSGGKYANVVFEA  239 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~g~d~vld~  239 (296)
                      ++++++|+|+++++|.+.++.+.+..|++|+..+++++ +.+.+    .....+..+..+..+.+ +......+|+++++
T Consensus         3 ~~k~vlITGas~gIG~~~a~~l~~~~g~~v~~~~~~~~~~~~~~----~~~~~Dv~~~~~v~~~~-~~~~~~~id~lv~n   77 (244)
T 4e4y_A            3 AMANYLVTGGSKGIGKAVVELLLQNKNHTVINIDIQQSFSAENL----KFIKADLTKQQDITNVL-DIIKNVSFDGIFLN   77 (244)
T ss_dssp             CCEEEEEETTTSHHHHHHHHHHTTSTTEEEEEEESSCCCCCTTE----EEEECCTTCHHHHHHHH-HHTTTCCEEEEEEC
T ss_pred             CCCeEEEeCCCChHHHHHHHHHHhcCCcEEEEeccccccccccc----eEEecCcCCHHHHHHHH-HHHHhCCCCEEEEC
Confidence            56889999999999999887662326889999888765 22111    00112334423444444 43334479999999


Q ss_pred             CCC
Q psy1959         240 VGG  242 (296)
Q Consensus       240 ~g~  242 (296)
                      .|.
T Consensus        78 Ag~   80 (244)
T 4e4y_A           78 AGI   80 (244)
T ss_dssp             CCC
T ss_pred             Ccc
Confidence            984

>3un1_A Probable oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.45A {Sinorhizobium meliloti}

Probab=96.08  E-value=0.0066  Score=52.13  Aligned_cols=78  Identities=15%  Similarity=0.112  Sum_probs=49.9

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCcE-EEEcCCchhHHHHHHHHhC-CCcccEEEE
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWA-ALTFTNEKSLVNKVLEVSG-GKYANVVFE  238 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~i~~~~~-~~g~d~vld  238 (296)
                      .+++++|+|++|++|.+.++.+ ...|++|++++++.++....   .... ..+..+..+..+.+.+... -.++|++++
T Consensus        27 ~~k~vlVTGas~gIG~aia~~l-~~~G~~V~~~~r~~~~~~~~---~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~lv~  102 (260)
T 3un1_A           27 QQKVVVITGASQGIGAGLVRAY-RDRNYRVVATSRSIKPSADP---DIHTVAGDISKPETADRIVREGIERFGRIDSLVN  102 (260)
T ss_dssp             TCCEEEESSCSSHHHHHHHHHH-HHTTCEEEEEESSCCCCSST---TEEEEESCTTSHHHHHHHHHHHHHHHSCCCEEEE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHH-HHCCCEEEEEeCChhhcccC---ceEEEEccCCCHHHHHHHHHHHHHHCCCCCEEEE
Confidence            5789999999999999988777 45799999999877654321   1111 1233332333333332211 126999999


Q ss_pred             CCCC
Q psy1959         239 AVGG  242 (296)
Q Consensus       239 ~~g~  242 (296)
                      +.|.
T Consensus       103 nAg~  106 (260)
T 3un1_A          103 NAGV  106 (260)
T ss_dssp             CCCC
T ss_pred             CCCC
Confidence            9984

>2z5l_A Tylkr1, tylactone synthase starter module and modules 1 & 2; short-chain dehydrogenase/reductase, rossman fold; 1.95A {Streptomyces fradiae}

Probab=96.06  E-value=0.024  Score=53.79  Aligned_cols=79  Identities=19%  Similarity=0.217  Sum_probs=52.3

Q ss_pred             CCCCcEEEEEcCCCcHHHHHHHHHHHhCCC-EEEEEeCCcch-------HHHHHhcCCcEEE---EcCCchhHHHHHHHH
Q psy1959         159 LKEKQTVLVTAAGGGLGLAAVDMATKIYKA-KVIGVCNSEDK-------TDLIRQKGAWAAL---TFTNEKSLVNKVLEV  227 (296)
Q Consensus       159 ~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~-~Vi~~~~~~~~-------~~~~~~~g~~~~~---~~~~~~~~~~~i~~~  227 (296)
                      ++++.+++|+|++|++|..+++.+ ...|+ +|+.++++..+       .+.+++.|....+   +..+...+.+.+.+ 
T Consensus       256 ~~~~~~vLITGgtGgIG~~lA~~L-a~~G~~~vvl~~R~~~~~~~~~~l~~~l~~~g~~v~~~~~Dvtd~~~v~~~~~~-  333 (511)
T 2z5l_A          256 WQPSGTVLITGGMGAIGRRLARRL-AAEGAERLVLTSRRGPEAPGAAELAEELRGHGCEVVHAACDVAERDALAALVTA-  333 (511)
T ss_dssp             CCCCSEEEEETTTSHHHHHHHHHH-HHTTCSEEEEEESSGGGSTTHHHHHHHHHTTTCEEEEEECCSSCHHHHHHHHHH-
T ss_pred             cCCCCEEEEECCCCHHHHHHHHHH-HhCCCcEEEEEecCCcccHHHHHHHHHHHhcCCEEEEEEeCCCCHHHHHHHHhc-
Confidence            567899999999999999988777 44788 68888887532       2334445654332   23332233333322 


Q ss_pred             hCCCcccEEEECCCC
Q psy1959         228 SGGKYANVVFEAVGG  242 (296)
Q Consensus       228 ~~~~g~d~vld~~g~  242 (296)
                         ..+|++|++.|.
T Consensus       334 ---~~ld~VVh~AGv  345 (511)
T 2z5l_A          334 ---YPPNAVFHTAGI  345 (511)
T ss_dssp             ---SCCSEEEECCCC
T ss_pred             ---CCCcEEEECCcc
Confidence               469999999984

>3oml_A GH14720P, peroxisomal multifunctional enzyme type 2, CG3415; rossmann fold, hot-DOG fold, hydratase 2 motif, peroxisomes, oxidoreductase; 2.15A {Drosophila melanogaster}

Probab=96.06  E-value=0.0097  Score=57.77  Aligned_cols=81  Identities=21%  Similarity=0.219  Sum_probs=48.1

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeC---------CcchHHH----HHhcCCcEEEEcCCchhHHHHHHHH
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCN---------SEDKTDL----IRQKGAWAALTFTNEKSLVNKVLEV  227 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~---------~~~~~~~----~~~~g~~~~~~~~~~~~~~~~i~~~  227 (296)
                      .|++++|+|+++++|.+.++.+ ...|++|+++++         +.++.+.    +++.+.....+..+..+..+.+.+.
T Consensus        18 ~gk~~lVTGas~GIG~aiA~~L-a~~Ga~Vv~~~r~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~D~~d~~~~~~~~~~~   96 (613)
T 3oml_A           18 DGRVAVVTGAGAGLGREYALLF-AERGAKVVVNDLGGTHSGDGASQRAADIVVDEIRKAGGEAVADYNSVIDGAKVIETA   96 (613)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHH-HHTTCEEEEC--------------CHHHHHHHHHHTTCCEEECCCCGGGHHHHHC--
T ss_pred             CCCEEEEeCCCcHHHHHHHHHH-HHCCCEEEEEeCCcccccccCCHHHHHHHHHHHHHhCCeEEEEeCCHHHHHHHHHHH
Confidence            5889999999999999977776 447999999876         4444433    3444555556665534444444433


Q ss_pred             hCC-CcccEEEECCCC
Q psy1959         228 SGG-KYANVVFEAVGG  242 (296)
Q Consensus       228 ~~~-~g~d~vld~~g~  242 (296)
                      ... ..+|+++++.|.
T Consensus        97 ~~~~g~iDiLVnnAGi  112 (613)
T 3oml_A           97 IKAFGRVDILVNNAGI  112 (613)
T ss_dssp             --------CEECCCCC
T ss_pred             HHHCCCCcEEEECCCC
Confidence            221 369999999984

>2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A {Pseudomonas aeruginosa}

Probab=96.03  E-value=0.0094  Score=52.71  Aligned_cols=73  Identities=11%  Similarity=-0.005  Sum_probs=48.8

Q ss_pred             cEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCcEE-EEcCCchhHHHHHHHHhCCCcccEEEECCC
Q psy1959         163 QTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAA-LTFTNEKSLVNKVLEVSGGKYANVVFEAVG  241 (296)
Q Consensus       163 ~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~i~~~~~~~g~d~vld~~g  241 (296)
                      .+|+|+|++|.+|..+++.+ ...|.+|++++++.++.+.+.+.+...+ .+..+    .+.+.++..  ++|+||.+.+
T Consensus        14 M~ilVtGatG~iG~~l~~~L-~~~g~~V~~~~r~~~~~~~l~~~~~~~~~~Dl~d----~~~~~~~~~--~~d~vih~a~   86 (342)
T 2x4g_A           14 VKYAVLGATGLLGHHAARAI-RAAGHDLVLIHRPSSQIQRLAYLEPECRVAEMLD----HAGLERALR--GLDGVIFSAG   86 (342)
T ss_dssp             CEEEEESTTSHHHHHHHHHH-HHTTCEEEEEECTTSCGGGGGGGCCEEEECCTTC----HHHHHHHTT--TCSEEEEC--
T ss_pred             CEEEEECCCcHHHHHHHHHH-HHCCCEEEEEecChHhhhhhccCCeEEEEecCCC----HHHHHHHHc--CCCEEEECCc
Confidence            47999999999999988887 4479999999998776654443344322 22223    234444443  6999999987


Q ss_pred             C
Q psy1959         242 G  242 (296)
Q Consensus       242 ~  242 (296)
                      .
T Consensus        87 ~   87 (342)
T 2x4g_A           87 Y   87 (342)
T ss_dssp             -
T ss_pred             c
Confidence            4

>4eue_A Putative reductase CA_C0462; TER, biofuel, synthetic biology, catalytic mechan substrate specificity, oxidoreductase; HET: NAI; 2.00A {Clostridium acetobutylicum} PDB: 4euf_A* 4euh_A*

Probab=96.02  E-value=0.033  Score=51.36  Aligned_cols=86  Identities=16%  Similarity=0.181  Sum_probs=53.2

Q ss_pred             HcCCCCCcEEEEEcCCCcHHHH--HHHHHHHhCCCEEEEEeCCcch---------------H-HHHHhcCCcEE-E--Ec
Q psy1959         156 HAKLKEKQTVLVTAAGGGLGLA--AVDMATKIYKAKVIGVCNSEDK---------------T-DLIRQKGAWAA-L--TF  214 (296)
Q Consensus       156 ~~~~~~g~~vlI~Ga~g~vG~a--a~~la~~~~g~~Vi~~~~~~~~---------------~-~~~~~~g~~~~-~--~~  214 (296)
                      ......|++++|+|+++++|++  .+... ...|++|++++++..+               . +.+++.|.... +  +.
T Consensus        54 ~~~~~~gK~aLVTGassGIG~A~aia~al-a~~Ga~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~Dv  132 (418)
T 4eue_A           54 AIGFRGPKKVLIVGASSGFGLATRISVAF-GGPEAHTIGVSYETGATDRRIGTAGWYNNIFFKEFAKKKGLVAKNFIEDA  132 (418)
T ss_dssp             SCCCCCCSEEEEESCSSHHHHHHHHHHHH-SSSCCEEEEEECCCCCCSSCCCCHHHHHHHHHHHHHHHTTCCEEEEESCT
T ss_pred             cCcCCCCCEEEEECCCcHHHHHHHHHHHH-HhCCCEEEEEecCcchhhhcccccccchHHHHHHHHHHcCCcEEEEEeeC
Confidence            4455789999999999999998  44444 3359999999875432               1 22344555432 2  33


Q ss_pred             CCchhHHHHHHHHhC-CCcccEEEECCCC
Q psy1959         215 TNEKSLVNKVLEVSG-GKYANVVFEAVGG  242 (296)
Q Consensus       215 ~~~~~~~~~i~~~~~-~~g~d~vld~~g~  242 (296)
                      .+..+..+.+.++.. -..+|+++++.|.
T Consensus       133 td~~~v~~~v~~i~~~~G~IDiLVnNAG~  161 (418)
T 4eue_A          133 FSNETKDKVIKYIKDEFGKIDLFVYSLAA  161 (418)
T ss_dssp             TCHHHHHHHHHHHHHTTCCEEEEEECCCC
T ss_pred             CCHHHHHHHHHHHHHHcCCCCEEEECCcc
Confidence            332333333333321 2369999999885

>3mje_A AMPHB; rossmann fold, oxidoreductase; HET: NDP; 1.36A {Streptomyces nodosus} PDB: 3mjc_A* 3mjs_A* 3mjv_A* 3mjt_A*

Probab=95.98  E-value=0.029  Score=52.99  Aligned_cols=82  Identities=18%  Similarity=0.231  Sum_probs=52.7

Q ss_pred             CCC--cEEEEEcCCCcHHHHHHHHHHHhCCC-EEEEEeCCcc---h----HHHHHhcCCcEEE---EcCCchhHHHHHHH
Q psy1959         160 KEK--QTVLVTAAGGGLGLAAVDMATKIYKA-KVIGVCNSED---K----TDLIRQKGAWAAL---TFTNEKSLVNKVLE  226 (296)
Q Consensus       160 ~~g--~~vlI~Ga~g~vG~aa~~la~~~~g~-~Vi~~~~~~~---~----~~~~~~~g~~~~~---~~~~~~~~~~~i~~  226 (296)
                      +++  ++++|+|++|++|..+++.+ ...|+ +|+.+.++..   +    .+.+++.|....+   +..+..+..+.+.+
T Consensus       235 ~~~~~~~vLITGgsgGIG~alA~~L-a~~Ga~~vvl~~R~~~~~~~~~~l~~~l~~~g~~v~~~~~Dvtd~~~v~~~~~~  313 (496)
T 3mje_A          235 RPPVHGSVLVTGGTGGIGGRVARRL-AEQGAAHLVLTSRRGADAPGAAELRAELEQLGVRVTIAACDAADREALAALLAE  313 (496)
T ss_dssp             CCCCCSEEEEETCSSHHHHHHHHHH-HHTTCSEEEEEESSGGGSTTHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHT
T ss_pred             CCCCCCEEEEECCCCchHHHHHHHH-HHCCCcEEEEEeCCCCChHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHH
Confidence            445  89999999999999988777 34688 8888887532   2    2334455765433   22332334444444


Q ss_pred             HhCCCcccEEEECCCC
Q psy1959         227 VSGGKYANVVFEAVGG  242 (296)
Q Consensus       227 ~~~~~g~d~vld~~g~  242 (296)
                      +.....+|++|++.|.
T Consensus       314 i~~~g~ld~vVh~AGv  329 (496)
T 3mje_A          314 LPEDAPLTAVFHSAGV  329 (496)
T ss_dssp             CCTTSCEEEEEECCCC
T ss_pred             HHHhCCCeEEEECCcc
Confidence            3323479999999884

>3h9u_A Adenosylhomocysteinase; NAD CO-factor complex, structural genomics, SGC stockholm, S genomics consortium, SGC, hydrolase, NAD; HET: NAD ADN PG4; 1.90A {Trypanosoma brucei} PDB: 3g1u_A* 1b3r_A* 1k0u_A* 1ky4_A* 2h5l_A* 1xwf_A* 1d4f_A* 1ky5_A* 3nj4_A* 1li4_A* 1a7a_A*

Probab=95.96  E-value=0.023  Score=52.51  Aligned_cols=84  Identities=14%  Similarity=0.092  Sum_probs=61.2

Q ss_pred             CCCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCcEEEEcCCchhHHHHHHHHhCCCcccEEEEC
Q psy1959         160 KEKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNKVLEVSGGKYANVVFEA  239 (296)
Q Consensus       160 ~~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~g~d~vld~  239 (296)
                      -.|++|+|.|. |.+|..+++.+ +.+|++|++.++++.+...+...|...       .++    .++.  ...|+++.+
T Consensus       209 L~GktVgIiG~-G~IG~~vA~~L-ka~Ga~Viv~D~~p~~a~~A~~~G~~~-------~sL----~eal--~~ADVVilt  273 (436)
T 3h9u_A          209 IAGKTACVCGY-GDVGKGCAAAL-RGFGARVVVTEVDPINALQAAMEGYQV-------LLV----EDVV--EEAHIFVTT  273 (436)
T ss_dssp             CTTCEEEEECC-SHHHHHHHHHH-HHTTCEEEEECSCHHHHHHHHHTTCEE-------CCH----HHHT--TTCSEEEEC
T ss_pred             ccCCEEEEEee-CHHHHHHHHHH-HHCCCEEEEECCChhhhHHHHHhCCee-------cCH----HHHH--hhCCEEEEC
Confidence            47999999996 99999999999 678999999999887777777777632       122    2222  268999998


Q ss_pred             CCCc-cHH-HHHHHhhccCceE
Q psy1959         240 VGGE-DKT-DLIRQKGAWAALT  259 (296)
Q Consensus       240 ~g~~-~~~-~~~~~lg~~~g~~  259 (296)
                      .+.. .++ ..++.| +++..+
T Consensus       274 ~gt~~iI~~e~l~~M-K~gAIV  294 (436)
T 3h9u_A          274 TGNDDIITSEHFPRM-RDDAIV  294 (436)
T ss_dssp             SSCSCSBCTTTGGGC-CTTEEE
T ss_pred             CCCcCccCHHHHhhc-CCCcEE
Confidence            8873 343 566667 555444

>2jl1_A Triphenylmethane reductase; oxidoreductase, bioremediation; HET: NAP GOL; 1.96A {Citrobacter SP} PDB: 2vrb_A* 2vrc_A 2vrc_D

Probab=95.92  E-value=0.013  Score=50.41  Aligned_cols=72  Identities=14%  Similarity=0.188  Sum_probs=51.8

Q ss_pred             EEEEEcCCCcHHHHHHHHHHHhC--CCEEEEEeCCcchHHHHHhcCCcEE-EEcCCchhHHHHHHHHhCCCcccEEEECC
Q psy1959         164 TVLVTAAGGGLGLAAVDMATKIY--KAKVIGVCNSEDKTDLIRQKGAWAA-LTFTNEKSLVNKVLEVSGGKYANVVFEAV  240 (296)
Q Consensus       164 ~vlI~Ga~g~vG~aa~~la~~~~--g~~Vi~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~i~~~~~~~g~d~vld~~  240 (296)
                      +|+|+|++|.+|..+++.+ ...  |.+|++++++.++.+.+...+...+ .+..+    .+.+.+...  ++|++|.+.
T Consensus         2 ~ilVtGatG~iG~~l~~~L-~~~~~g~~V~~~~r~~~~~~~l~~~~~~~~~~D~~d----~~~l~~~~~--~~d~vi~~a   74 (287)
T 2jl1_A            2 SIAVTGATGQLGGLVIQHL-LKKVPASQIIAIVRNVEKASTLADQGVEVRHGDYNQ----PESLQKAFA--GVSKLLFIS   74 (287)
T ss_dssp             CEEETTTTSHHHHHHHHHH-TTTSCGGGEEEEESCTTTTHHHHHTTCEEEECCTTC----HHHHHHHTT--TCSEEEECC
T ss_pred             eEEEEcCCchHHHHHHHHH-HHhCCCCeEEEEEcCHHHHhHHhhcCCeEEEeccCC----HHHHHHHHh--cCCEEEEcC
Confidence            5899999999999998888 445  8899999998887776655554332 23333    234444443  689999998


Q ss_pred             CC
Q psy1959         241 GG  242 (296)
Q Consensus       241 g~  242 (296)
                      +.
T Consensus        75 ~~   76 (287)
T 2jl1_A           75 GP   76 (287)
T ss_dssp             CC
T ss_pred             CC
Confidence            84

>2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase; 1.60A {Medicago sativa}

Probab=95.91  E-value=0.0097  Score=51.80  Aligned_cols=74  Identities=15%  Similarity=0.196  Sum_probs=50.4

Q ss_pred             CcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCc-------chHHHHH---hcCCcEE-EEcCCchhHHHHHHHHhCC
Q psy1959         162 KQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSE-------DKTDLIR---QKGAWAA-LTFTNEKSLVNKVLEVSGG  230 (296)
Q Consensus       162 g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~-------~~~~~~~---~~g~~~~-~~~~~~~~~~~~i~~~~~~  230 (296)
                      +.+|+|+|++|.+|..+++.+ ...|.+|++++++.       ++.+.++   ..++..+ .+..+    .+.+.++.. 
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L-~~~g~~V~~~~R~~~~~~~~~~~~~~~~~l~~~~v~~v~~D~~d----~~~l~~~~~-   75 (307)
T 2gas_A            2 ENKILILGPTGAIGRHIVWAS-IKAGNPTYALVRKTITAANPETKEELIDNYQSLGVILLEGDIND----HETLVKAIK-   75 (307)
T ss_dssp             CCCEEEESTTSTTHHHHHHHH-HHHTCCEEEEECCSCCSSCHHHHHHHHHHHHHTTCEEEECCTTC----HHHHHHHHT-
T ss_pred             CcEEEEECCCchHHHHHHHHH-HhCCCcEEEEECCCcccCChHHHHHHHHHHHhCCCEEEEeCCCC----HHHHHHHHh-
Confidence            357999999999999988877 34589999999876       4444333   3454332 23333    234444443 


Q ss_pred             CcccEEEECCCC
Q psy1959         231 KYANVVFEAVGG  242 (296)
Q Consensus       231 ~g~d~vld~~g~  242 (296)
                       ++|++|++.+.
T Consensus        76 -~~d~vi~~a~~   86 (307)
T 2gas_A           76 -QVDIVICAAGR   86 (307)
T ss_dssp             -TCSEEEECSSS
T ss_pred             -CCCEEEECCcc
Confidence             69999999985

>2zcu_A Uncharacterized oxidoreductase YTFG; alpha-beta sandwich; 1.80A {Escherichia coli} PDB: 2zcv_A*

Probab=95.90  E-value=0.015  Score=49.98  Aligned_cols=72  Identities=10%  Similarity=0.177  Sum_probs=50.0

Q ss_pred             EEEEEcCCCcHHHHHHHHHHHhC--CCEEEEEeCCcchHHHHHhcCCcEE-EEcCCchhHHHHHHHHhCCCcccEEEECC
Q psy1959         164 TVLVTAAGGGLGLAAVDMATKIY--KAKVIGVCNSEDKTDLIRQKGAWAA-LTFTNEKSLVNKVLEVSGGKYANVVFEAV  240 (296)
Q Consensus       164 ~vlI~Ga~g~vG~aa~~la~~~~--g~~Vi~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~i~~~~~~~g~d~vld~~  240 (296)
                      +|+|+|++|.+|...++.+ ...  |.+|++++++.++.+.+...+...+ .+..+    .+.+.+..  +++|++|.+.
T Consensus         1 ~ilVtGatG~iG~~l~~~L-~~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~D~~d----~~~~~~~~--~~~d~vi~~a   73 (286)
T 2zcu_A            1 MIAITGATGQLGHYVIESL-MKTVPASQIVAIVRNPAKAQALAAQGITVRQADYGD----EAALTSAL--QGVEKLLLIS   73 (286)
T ss_dssp             CEEEESTTSHHHHHHHHHH-TTTSCGGGEEEEESCTTTCHHHHHTTCEEEECCTTC----HHHHHHHT--TTCSEEEECC
T ss_pred             CEEEEcCCchHHHHHHHHH-HhhCCCceEEEEEcChHhhhhhhcCCCeEEEcCCCC----HHHHHHHH--hCCCEEEEeC
Confidence            4899999999999998888 445  8899999998887766655554332 23333    23444444  3689999998


Q ss_pred             CC
Q psy1959         241 GG  242 (296)
Q Consensus       241 g~  242 (296)
                      +.
T Consensus        74 ~~   75 (286)
T 2zcu_A           74 SS   75 (286)
T ss_dssp             --
T ss_pred             CC
Confidence            74

>3gk3_A Acetoacetyl-COA reductase; acetoacetyl-CO reductase, oxidoreductase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}

Probab=95.90  E-value=0.018  Score=49.41  Aligned_cols=81  Identities=21%  Similarity=0.132  Sum_probs=49.9

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEe-CCcchHHHH----HhcCCcE-E--EEcCCchhHHHHHHHHhC-CC
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVC-NSEDKTDLI----RQKGAWA-A--LTFTNEKSLVNKVLEVSG-GK  231 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~-~~~~~~~~~----~~~g~~~-~--~~~~~~~~~~~~i~~~~~-~~  231 (296)
                      .+++++|+|+++++|.++++.+ ...|++|++++ ++.++.+..    ++.+... .  .+..+..+..+.+.+... -.
T Consensus        24 ~~k~vlITGas~gIG~~~a~~l-~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g  102 (269)
T 3gk3_A           24 AKRVAFVTGGMGGLGAAISRRL-HDAGMAVAVSHSERNDHVSTWLMHERDAGRDFKAYAVDVADFESCERCAEKVLADFG  102 (269)
T ss_dssp             CCCEEEETTTTSHHHHHHHHHH-HTTTCEEEEEECSCHHHHHHHHHHHHTTTCCCEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             cCCEEEEECCCchHHHHHHHHH-HHCCCEEEEEcCCchHHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHHcC
Confidence            6789999999999999988777 45799999988 444443322    2223322 2  233332333333332211 12


Q ss_pred             cccEEEECCCC
Q psy1959         232 YANVVFEAVGG  242 (296)
Q Consensus       232 g~d~vld~~g~  242 (296)
                      .+|+++++.|.
T Consensus       103 ~id~li~nAg~  113 (269)
T 3gk3_A          103 KVDVLINNAGI  113 (269)
T ss_dssp             CCSEEEECCCC
T ss_pred             CCCEEEECCCc
Confidence            69999999884

>1rkx_A CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD; 1.80A {Yersinia pseudotuberculosis} SCOP: c.2.1.2 PDB: 1wvg_A*

Probab=95.90  E-value=0.0096  Score=53.16  Aligned_cols=77  Identities=17%  Similarity=0.156  Sum_probs=49.7

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHh-c----CCcEE-EEcCCchhHHHHHHHHhCCCccc
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQ-K----GAWAA-LTFTNEKSLVNKVLEVSGGKYAN  234 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~-~----g~~~~-~~~~~~~~~~~~i~~~~~~~g~d  234 (296)
                      .+.+|+|+|++|.+|..+++.+ ...|.+|++++++.++...+.+ +    +...+ .+..+...+.+.+...    .+|
T Consensus         8 ~~~~vlVtGatG~iG~~l~~~L-~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~----~~d   82 (357)
T 1rkx_A            8 QGKRVFVTGHTGFKGGWLSLWL-QTMGATVKGYSLTAPTVPSLFETARVADGMQSEIGDIRDQNKLLESIREF----QPE   82 (357)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHH-HHTTCEEEEEESSCSSSSCHHHHTTTTTTSEEEECCTTCHHHHHHHHHHH----CCS
T ss_pred             CCCEEEEECCCchHHHHHHHHH-HhCCCeEEEEeCCCcccchhhHhhccCCceEEEEccccCHHHHHHHHHhc----CCC
Confidence            3578999999999999988877 4479999999987765433221 1    22211 2333322333333222    589


Q ss_pred             EEEECCCC
Q psy1959         235 VVFEAVGG  242 (296)
Q Consensus       235 ~vld~~g~  242 (296)
                      +||.+.+.
T Consensus        83 ~vih~A~~   90 (357)
T 1rkx_A           83 IVFHMAAQ   90 (357)
T ss_dssp             EEEECCSC
T ss_pred             EEEECCCC
Confidence            99999983

>1fjh_A 3alpha-hydroxysteroid dehydrogenase/carbonyl reductase; short chain dehydrogenase, SDR, xenobiotic, metyrapone, oligomerisation; 1.68A {Comamonas testosteroni} SCOP: c.2.1.2 PDB: 1fk8_A*

Probab=95.89  E-value=0.017  Score=48.95  Aligned_cols=69  Identities=10%  Similarity=0.165  Sum_probs=46.2

Q ss_pred             cEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCcEEEEcCCchhHHHHHHHHhCC--CcccEEEECC
Q psy1959         163 QTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNKVLEVSGG--KYANVVFEAV  240 (296)
Q Consensus       163 ~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~--~g~d~vld~~  240 (296)
                      ++++|+|++|++|.++++.+ ...|++|+++++++++.+.      .    ..-+..-.+.+.++...  ..+|+++++.
T Consensus         2 k~vlVTGas~gIG~~~a~~l-~~~G~~V~~~~r~~~~~~~------~----~~~Dl~~~~~v~~~~~~~~~~id~lv~~A   70 (257)
T 1fjh_A            2 SIIVISGCATGIGAATRKVL-EAAGHQIVGIDIRDAEVIA------D----LSTAEGRKQAIADVLAKCSKGMDGLVLCA   70 (257)
T ss_dssp             CEEEEETTTSHHHHHHHHHH-HHTTCEEEEEESSSSSEEC------C----TTSHHHHHHHHHHHHTTCTTCCSEEEECC
T ss_pred             CEEEEeCCCCHHHHHHHHHH-HHCCCEEEEEeCCchhhcc------c----cccCCCCHHHHHHHHHHhCCCCCEEEECC
Confidence            47999999999999988877 4479999999988765421      0    11101112234443322  3689999999


Q ss_pred             CC
Q psy1959         241 GG  242 (296)
Q Consensus       241 g~  242 (296)
                      |.
T Consensus        71 g~   72 (257)
T 1fjh_A           71 GL   72 (257)
T ss_dssp             CC
T ss_pred             CC
Confidence            85

>2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, protein-nucleotide comple binding protein; HET: NAD UDP; 2.00A {Bordetella bronchiseptica} PDB: 2pzl_A* 2pzk_A*

Probab=95.84  E-value=0.012  Score=52.05  Aligned_cols=77  Identities=12%  Similarity=0.140  Sum_probs=49.1

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHH-HHHhcCCcEEE--EcCCchhHHHHHHHHhCCCcccEEE
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTD-LIRQKGAWAAL--TFTNEKSLVNKVLEVSGGKYANVVF  237 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~-~~~~~g~~~~~--~~~~~~~~~~~i~~~~~~~g~d~vl  237 (296)
                      .+.+|+|+|++|.+|..+++.+ ...|.+|++++++..+.. .+.++.....+  +..+...+.+.+.+.    ++|++|
T Consensus        19 ~~~~vlVTGasG~iG~~l~~~L-~~~g~~V~~~~r~~~~~~~~~~~l~~v~~~~~Dl~d~~~~~~~~~~~----~~D~vi   93 (330)
T 2pzm_A           19 SHMRILITGGAGCLGSNLIEHW-LPQGHEILVIDNFATGKREVLPPVAGLSVIEGSVTDAGLLERAFDSF----KPTHVV   93 (330)
T ss_dssp             TCCEEEEETTTSHHHHHHHHHH-GGGTCEEEEEECCSSSCGGGSCSCTTEEEEECCTTCHHHHHHHHHHH----CCSEEE
T ss_pred             CCCEEEEECCCCHHHHHHHHHH-HHCCCEEEEEECCCccchhhhhccCCceEEEeeCCCHHHHHHHHhhc----CCCEEE
Confidence            4679999999999999988888 456999999998654322 11122111222  233322333333332    799999


Q ss_pred             ECCCC
Q psy1959         238 EAVGG  242 (296)
Q Consensus       238 d~~g~  242 (296)
                      .+.|.
T Consensus        94 h~A~~   98 (330)
T 2pzm_A           94 HSAAA   98 (330)
T ss_dssp             ECCCC
T ss_pred             ECCcc
Confidence            99985

>3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii}

Probab=95.82  E-value=0.044  Score=49.42  Aligned_cols=85  Identities=18%  Similarity=0.106  Sum_probs=58.8

Q ss_pred             cEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCcEEEEcCCchhHHHHHHHHhCCCcccEEEECCCC
Q psy1959         163 QTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNKVLEVSGGKYANVVFEAVGG  242 (296)
Q Consensus       163 ~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~g~d~vld~~g~  242 (296)
                      -+|+|+|+ |.+|..+++.+ . ...+|.+++++.++.+.+++......++..+    .+.+.+...  +.|+|+++++.
T Consensus        17 mkilvlGa-G~vG~~~~~~L-~-~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~d----~~~l~~~~~--~~DvVi~~~p~   87 (365)
T 3abi_A           17 MKVLILGA-GNIGRAIAWDL-K-DEFDVYIGDVNNENLEKVKEFATPLKVDASN----FDKLVEVMK--EFELVIGALPG   87 (365)
T ss_dssp             CEEEEECC-SHHHHHHHHHH-T-TTSEEEEEESCHHHHHHHTTTSEEEECCTTC----HHHHHHHHT--TCSEEEECCCG
T ss_pred             cEEEEECC-CHHHHHHHHHH-h-cCCCeEEEEcCHHHHHHHhccCCcEEEecCC----HHHHHHHHh--CCCEEEEecCC
Confidence            46999998 99999998888 3 4679999999999988887654333344443    234444442  68999999997


Q ss_pred             c-cHHHHHHHhhccCc
Q psy1959         243 E-DKTDLIRQKGAWAA  257 (296)
Q Consensus       243 ~-~~~~~~~~lg~~~g  257 (296)
                      . ....+-.|+ ..+.
T Consensus        88 ~~~~~v~~~~~-~~g~  102 (365)
T 3abi_A           88 FLGFKSIKAAI-KSKV  102 (365)
T ss_dssp             GGHHHHHHHHH-HHTC
T ss_pred             cccchHHHHHH-hcCc
Confidence            4 444455555 4443

>3i4f_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, 3-oxoacyl-reductase, PSI-2; 2.39A {Bacillus thuringiensis serovar kurstakorganism_taxid} SCOP: c.2.1.0

Probab=95.81  E-value=0.016  Score=49.49  Aligned_cols=80  Identities=16%  Similarity=0.143  Sum_probs=50.1

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcc-hHHHHHhc----CCcEE---EEcCCchhHHHHHHHHhC-CC
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSED-KTDLIRQK----GAWAA---LTFTNEKSLVNKVLEVSG-GK  231 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~-~~~~~~~~----g~~~~---~~~~~~~~~~~~i~~~~~-~~  231 (296)
                      .+++++|+|++|++|.+.++.+ ...|++|++++++.+ ..+.+++.    +....   .+..+..+..+.+.+... ..
T Consensus         6 ~~k~vlVTGas~gIG~~~a~~l-~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g   84 (264)
T 3i4f_A            6 FVRHALITAGTKGLGKQVTEKL-LAKGYSVTVTYHSDTTAMETMKETYKDVEERLQFVQADVTKKEDLHKIVEEAMSHFG   84 (264)
T ss_dssp             CCCEEEETTTTSHHHHHHHHHH-HHTTCEEEEEESSCHHHHHHHHHHTGGGGGGEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred             ccCEEEEeCCCchhHHHHHHHH-HHCCCEEEEEcCCChHHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHHhC
Confidence            4689999999999999988777 457999999866544 33443332    22222   233332333333333311 12


Q ss_pred             cccEEEECCC
Q psy1959         232 YANVVFEAVG  241 (296)
Q Consensus       232 g~d~vld~~g  241 (296)
                      .+|+++++.|
T Consensus        85 ~id~lv~~Ag   94 (264)
T 3i4f_A           85 KIDFLINNAG   94 (264)
T ss_dssp             CCCEEECCCC
T ss_pred             CCCEEEECCc
Confidence            6999999999

>3sxp_A ADP-L-glycero-D-mannoheptose-6-epimerase; rossman fold, NAD binding, isomerase; HET: NAD; 2.55A {Helicobacter pylori}

Probab=95.77  E-value=0.033  Score=49.80  Aligned_cols=76  Identities=17%  Similarity=0.065  Sum_probs=48.9

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHh--CCCEEEEEeCCcch-------------HHHHHhcCCcEE-EEcCCchhHHHHH
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKI--YKAKVIGVCNSEDK-------------TDLIRQKGAWAA-LTFTNEKSLVNKV  224 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~--~g~~Vi~~~~~~~~-------------~~~~~~~g~~~~-~~~~~~~~~~~~i  224 (296)
                      .+.+|||+|++|.+|..+++.+ ..  .|.+|++++++...             ...+...+...+ .+..+    .+.+
T Consensus         9 ~~~~vlVTGatG~IG~~l~~~L-~~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d----~~~~   83 (362)
T 3sxp_A            9 ENQTILITGGAGFVGSNLAFHF-QENHPKAKVVVLDKFRSNTLFSNNRPSSLGHFKNLIGFKGEVIAADINN----PLDL   83 (362)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHH-HHHCTTSEEEEEECCCCC-------CCCCCCGGGGTTCCSEEEECCTTC----HHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHH-HhhCCCCeEEEEECCCccccccccchhhhhhhhhccccCceEEECCCCC----HHHH
Confidence            4689999999999999988888 44  69999999986541             111111122111 22223    2334


Q ss_pred             HHHhCCCcccEEEECCCC
Q psy1959         225 LEVSGGKYANVVFEAVGG  242 (296)
Q Consensus       225 ~~~~~~~g~d~vld~~g~  242 (296)
                      .++ ...++|+||++.|.
T Consensus        84 ~~~-~~~~~D~vih~A~~  100 (362)
T 3sxp_A           84 RRL-EKLHFDYLFHQAAV  100 (362)
T ss_dssp             HHH-TTSCCSEEEECCCC
T ss_pred             HHh-hccCCCEEEECCcc
Confidence            444 23489999999984

>1c1d_A L-phenylalanine dehydrogenase; amino acid dehydrogenase, oxidative deamination mechanism, oxidoreductase; HET: PHE NAD; 1.25A {Rhodococcus SP} SCOP: c.2.1.7 c.58.1.1 PDB: 1bw9_A* 1c1x_A* 1bw9_B* 1c1d_B* 1c1x_B* 1bxg_B* 1bxg_A*

Probab=95.76  E-value=0.081  Score=47.66  Aligned_cols=96  Identities=14%  Similarity=0.062  Sum_probs=62.6

Q ss_pred             CCCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCcEE------------EEcCC-chhH-HHHHH
Q psy1959         160 KEKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAA------------LTFTN-EKSL-VNKVL  225 (296)
Q Consensus       160 ~~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~~~------------~~~~~-~~~~-~~~i~  225 (296)
                      -+|++|.|.|. |.+|+.+++.+ +..|++|++.+.+..+.+..+++++..+            +.... .... .+.+.
T Consensus       173 L~GktV~I~G~-GnVG~~~A~~l-~~~GakVvvsD~~~~~~~~a~~~ga~~v~~~ell~~~~DIliP~A~~~~I~~~~~~  250 (355)
T 1c1d_A          173 LDGLTVLVQGL-GAVGGSLASLA-AEAGAQLLVADTDTERVAHAVALGHTAVALEDVLSTPCDVFAPCAMGGVITTEVAR  250 (355)
T ss_dssp             STTCEEEEECC-SHHHHHHHHHH-HHTTCEEEEECSCHHHHHHHHHTTCEECCGGGGGGCCCSEEEECSCSCCBCHHHHH
T ss_pred             CCCCEEEEECc-CHHHHHHHHHH-HHCCCEEEEEeCCccHHHHHHhcCCEEeChHHhhcCccceecHhHHHhhcCHHHHh
Confidence            47999999996 99999999999 6689999988887666555555665322            11100 0000 01111


Q ss_pred             HHhCCCcccEEEECCCCccH-HHHHHHhhccCceEEee
Q psy1959         226 EVSGGKYANVVFEAVGGEDK-TDLIRQKGAWAALTFTN  262 (296)
Q Consensus       226 ~~~~~~g~d~vld~~g~~~~-~~~~~~lg~~~g~~~~~  262 (296)
                      .+    +.++++++..++.. ..+.+.| ...|.+..+
T Consensus       251 ~l----k~~iVie~AN~p~t~~eA~~~L-~~~gIlv~P  283 (355)
T 1c1d_A          251 TL----DCSVVAGAANNVIADEAASDIL-HARGILYAP  283 (355)
T ss_dssp             HC----CCSEECCSCTTCBCSHHHHHHH-HHTTCEECC
T ss_pred             hC----CCCEEEECCCCCCCCHHHHHHH-HhCCEEEEC
Confidence            11    47889998887654 4778888 666666443

>2fr1_A Erythromycin synthase, eryai; short chain dehydrogenase/reductase, oxidoreductase; HET: NDP; 1.79A {Saccharopolyspora erythraea} SCOP: c.2.1.2 c.2.1.2 PDB: 2fr0_A*

Probab=95.76  E-value=0.028  Score=52.95  Aligned_cols=83  Identities=23%  Similarity=0.256  Sum_probs=53.7

Q ss_pred             CCCCcEEEEEcCCCcHHHHHHHHHHHhCCC-EEEEEeCCcch---H----HHHHhcCCcEEE---EcCCchhHHHHHHHH
Q psy1959         159 LKEKQTVLVTAAGGGLGLAAVDMATKIYKA-KVIGVCNSEDK---T----DLIRQKGAWAAL---TFTNEKSLVNKVLEV  227 (296)
Q Consensus       159 ~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~-~Vi~~~~~~~~---~----~~~~~~g~~~~~---~~~~~~~~~~~i~~~  227 (296)
                      ++++.+++|+|++|++|..+++.+.+ .|+ +|+.++++...   .    +.+++.|....+   +..+.....+.+.+.
T Consensus       223 ~~~~~~vLITGgtGgIG~~la~~La~-~G~~~vvl~~R~~~~~~~~~~l~~~l~~~g~~v~~~~~Dv~d~~~v~~~~~~i  301 (486)
T 2fr1_A          223 WKPTGTVLVTGGTGGVGGQIARWLAR-RGAPHLLLVSRSGPDADGAGELVAELEALGARTTVAACDVTDRESVRELLGGI  301 (486)
T ss_dssp             CCCCSEEEEETTTSHHHHHHHHHHHH-HTCSEEEEEESSGGGSTTHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHTS
T ss_pred             cCCCCEEEEECCCCHHHHHHHHHHHH-cCCCEEEEEcCCCCCcHHHHHHHHHHHhcCCEEEEEEeCCCCHHHHHHHHHHH
Confidence            56889999999999999998877734 588 58988887641   2    334455654332   223323333334333


Q ss_pred             hCCCcccEEEECCCC
Q psy1959         228 SGGKYANVVFEAVGG  242 (296)
Q Consensus       228 ~~~~g~d~vld~~g~  242 (296)
                      .....+|.+|.+.|.
T Consensus       302 ~~~g~ld~VIh~AG~  316 (486)
T 2fr1_A          302 GDDVPLSAVFHAAAT  316 (486)
T ss_dssp             CTTSCEEEEEECCCC
T ss_pred             HhcCCCcEEEECCcc
Confidence            222368999999984

>3slg_A PBGP3 protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, melioidosis, glanders; 2.10A {Burkholderia pseudomallei}

Probab=95.73  E-value=0.026  Score=50.60  Aligned_cols=76  Identities=16%  Similarity=0.075  Sum_probs=51.2

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhc-CCcEE-EEcC-CchhHHHHHHHHhCCCcccEEE
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQK-GAWAA-LTFT-NEKSLVNKVLEVSGGKYANVVF  237 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~-g~~~~-~~~~-~~~~~~~~i~~~~~~~g~d~vl  237 (296)
                      .+.+|+|+|++|.+|..+++.+.+..|.+|++++++.++...+.+. +...+ .+.. +    .+.+.++..  ++|+||
T Consensus        23 ~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~~~~~v~~~~~Dl~~d----~~~~~~~~~--~~d~Vi   96 (372)
T 3slg_A           23 KAKKVLILGVNGFIGHHLSKRILETTDWEVFGMDMQTDRLGDLVKHERMHFFEGDITIN----KEWVEYHVK--KCDVIL   96 (372)
T ss_dssp             CCCEEEEESCSSHHHHHHHHHHHHHSSCEEEEEESCCTTTGGGGGSTTEEEEECCTTTC----HHHHHHHHH--HCSEEE
T ss_pred             CCCEEEEECCCChHHHHHHHHHHhCCCCEEEEEeCChhhhhhhccCCCeEEEeCccCCC----HHHHHHHhc--cCCEEE
Confidence            3578999999999999988887443389999999988776555432 32221 1222 2    223333332  799999


Q ss_pred             ECCCC
Q psy1959         238 EAVGG  242 (296)
Q Consensus       238 d~~g~  242 (296)
                      .+.+.
T Consensus        97 h~A~~  101 (372)
T 3slg_A           97 PLVAI  101 (372)
T ss_dssp             ECBCC
T ss_pred             EcCcc
Confidence            98874

>4iiu_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAP; 2.10A {Escherichia coli} PDB: 4iiv_A*

Probab=95.73  E-value=0.031  Score=47.85  Aligned_cols=81  Identities=16%  Similarity=0.044  Sum_probs=49.3

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEe-CCcchHHHH----HhcCCcEEE---EcCCchhHHHHHHHHhC-CC
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVC-NSEDKTDLI----RQKGAWAAL---TFTNEKSLVNKVLEVSG-GK  231 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~-~~~~~~~~~----~~~g~~~~~---~~~~~~~~~~~i~~~~~-~~  231 (296)
                      .+++++|+|+++++|.++++.+ ...|++|++.. +++++.+.+    ++.+....+   +..+..+..+.+.+... ..
T Consensus        25 ~~k~vlVTGas~gIG~~la~~l-~~~G~~v~i~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g  103 (267)
T 4iiu_A           25 MSRSVLVTGASKGIGRAIARQL-AADGFNIGVHYHRDAAGAQETLNAIVANGGNGRLLSFDVANREQCREVLEHEIAQHG  103 (267)
T ss_dssp             CCCEEEETTTTSHHHHHHHHHH-HHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHC
T ss_pred             CCCEEEEECCCChHHHHHHHHH-HHCCCEEEEEeCCchHHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHHhC
Confidence            4689999999999999988777 45799997655 444443332    333433322   33332333333332211 12


Q ss_pred             cccEEEECCCC
Q psy1959         232 YANVVFEAVGG  242 (296)
Q Consensus       232 g~d~vld~~g~  242 (296)
                      .+|+++++.|.
T Consensus       104 ~id~li~nAg~  114 (267)
T 4iiu_A          104 AWYGVVSNAGI  114 (267)
T ss_dssp             CCSEEEECCCC
T ss_pred             CccEEEECCCC
Confidence            69999999884

>3qp9_A Type I polyketide synthase pikaii; rossmann fold, ketoreductase, epimerization, oxidoreductase; 1.88A {Streptomyces venezuelae}

Probab=95.73  E-value=0.019  Score=54.57  Aligned_cols=83  Identities=19%  Similarity=0.095  Sum_probs=51.6

Q ss_pred             CCCCcEEEEEcCCCcHHHHHHHHHHHhCCCE-EEEE-eCCc-------------ch----HHHHHhcCCcEEE---EcCC
Q psy1959         159 LKEKQTVLVTAAGGGLGLAAVDMATKIYKAK-VIGV-CNSE-------------DK----TDLIRQKGAWAAL---TFTN  216 (296)
Q Consensus       159 ~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~~-Vi~~-~~~~-------------~~----~~~~~~~g~~~~~---~~~~  216 (296)
                      ++++.+++|+|++|++|..+++.+ ...|++ ++.+ .++.             ++    .+.+++.|....+   +..+
T Consensus       248 ~~~~~~vLITGgsgGIG~~lA~~L-a~~G~~~vvl~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~v~~~~~Dvtd  326 (525)
T 3qp9_A          248 WQADGTVLVTGAEEPAAAEAARRL-ARDGAGHLLLHTTPSGSEGAEGTSGAAEDSGLAGLVAELADLGATATVVTCDLTD  326 (525)
T ss_dssp             SCTTSEEEESSTTSHHHHHHHHHH-HHHTCCEEEEEECCCC---------------CHHHHHHHHHHTCEEEEEECCTTS
T ss_pred             ecCCCEEEEECCCCcHHHHHHHHH-HHcCCCEEEEEeCCCCCCccccccccccCHHHHHHHHHHHhcCCEEEEEECCCCC
Confidence            568899999999999999988776 335886 6666 6652             22    2334445654433   2233


Q ss_pred             chhHHHHHHHHhCCCcccEEEECCCC
Q psy1959         217 EKSLVNKVLEVSGGKYANVVFEAVGG  242 (296)
Q Consensus       217 ~~~~~~~i~~~~~~~g~d~vld~~g~  242 (296)
                      .....+.+.++.....+|.+|++.|.
T Consensus       327 ~~~v~~~~~~i~~~g~id~vVh~AGv  352 (525)
T 3qp9_A          327 AEAAARLLAGVSDAHPLSAVLHLPPT  352 (525)
T ss_dssp             HHHHHHHHHTSCTTSCEEEEEECCCC
T ss_pred             HHHHHHHHHHHHhcCCCcEEEECCcC
Confidence            23333334433323468999999984

>2dkn_A 3-alpha-hydroxysteroid dehydrogenase; oxidoreductase, rossmann fold; HET: NAI; 1.80A {Pseudomonas SP}

Probab=95.73  E-value=0.0052  Score=51.89  Aligned_cols=71  Identities=14%  Similarity=0.165  Sum_probs=45.1

Q ss_pred             cEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCcEEEEcCCchhHHHHHHHHhCCCcccEEEECCCC
Q psy1959         163 QTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNKVLEVSGGKYANVVFEAVGG  242 (296)
Q Consensus       163 ~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~g~d~vld~~g~  242 (296)
                      ++++|+|++|++|..++..+ ...|++|+++++++++.+.      ....+..+..++.+.+.+.  ..++|+++++.|.
T Consensus         2 k~vlVtGasg~iG~~l~~~L-~~~g~~V~~~~r~~~~~~~------~~~~D~~~~~~~~~~~~~~--~~~~d~vi~~Ag~   72 (255)
T 2dkn_A            2 SVIAITGSASGIGAALKELL-ARAGHTVIGIDRGQADIEA------DLSTPGGRETAVAAVLDRC--GGVLDGLVCCAGV   72 (255)
T ss_dssp             CEEEEETTTSHHHHHHHHHH-HHTTCEEEEEESSSSSEEC------CTTSHHHHHHHHHHHHHHH--TTCCSEEEECCCC
T ss_pred             cEEEEeCCCcHHHHHHHHHH-HhCCCEEEEEeCChhHccc------cccCCcccHHHHHHHHHHc--CCCccEEEECCCC
Confidence            47999999999999988877 4479999999987765321      0000111111222222222  1379999999885

>4id9_A Short-chain dehydrogenase/reductase; putative dehydrogenase, enzyme function initiative, EFI, STR genomics, oxidoreductase; HET: NAD; 1.60A {Agrobacterium fabrum} PDB: 4idg_A*

Probab=95.70  E-value=0.016  Score=51.32  Aligned_cols=70  Identities=16%  Similarity=0.118  Sum_probs=47.3

Q ss_pred             CCCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCcEE-EEcCCchhHHHHHHHHhCCCcccEEEE
Q psy1959         160 KEKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAA-LTFTNEKSLVNKVLEVSGGKYANVVFE  238 (296)
Q Consensus       160 ~~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~i~~~~~~~g~d~vld  238 (296)
                      .++.+|||+|++|.+|..+++.+ ...|.+|++++++.++      .+...+ .+..+    .+.+.++..  ++|+|+.
T Consensus        17 ~~~~~vlVtGatG~iG~~l~~~L-~~~G~~V~~~~r~~~~------~~~~~~~~Dl~d----~~~~~~~~~--~~d~vih   83 (347)
T 4id9_A           17 RGSHMILVTGSAGRVGRAVVAAL-RTQGRTVRGFDLRPSG------TGGEEVVGSLED----GQALSDAIM--GVSAVLH   83 (347)
T ss_dssp             ----CEEEETTTSHHHHHHHHHH-HHTTCCEEEEESSCCS------SCCSEEESCTTC----HHHHHHHHT--TCSEEEE
T ss_pred             cCCCEEEEECCCChHHHHHHHHH-HhCCCEEEEEeCCCCC------CCccEEecCcCC----HHHHHHHHh--CCCEEEE
Confidence            46788999999999999999888 4579999999988765      233322 23333    233344432  7999999


Q ss_pred             CCCC
Q psy1959         239 AVGG  242 (296)
Q Consensus       239 ~~g~  242 (296)
                      +.+.
T Consensus        84 ~A~~   87 (347)
T 4id9_A           84 LGAF   87 (347)
T ss_dssp             CCCC
T ss_pred             CCcc
Confidence            8874

>3gdg_A Probable NADP-dependent mannitol dehydrogenase; rossmann fold, beta-alpha-beta motifs, open twisted sheet, A NADP, oxidoreductase; 2.30A {Cladosporium herbarum} SCOP: c.2.1.0 PDB: 3gdf_A

Probab=95.69  E-value=0.019  Score=49.12  Aligned_cols=81  Identities=20%  Similarity=0.156  Sum_probs=50.8

Q ss_pred             CCcEEEEEcCC--CcHHHHHHHHHHHhCCCEEEEEeCCcchH-----HHHH-hcCCcEE---EEcCCchhHHHHHHHHhC
Q psy1959         161 EKQTVLVTAAG--GGLGLAAVDMATKIYKAKVIGVCNSEDKT-----DLIR-QKGAWAA---LTFTNEKSLVNKVLEVSG  229 (296)
Q Consensus       161 ~g~~vlI~Ga~--g~vG~aa~~la~~~~g~~Vi~~~~~~~~~-----~~~~-~~g~~~~---~~~~~~~~~~~~i~~~~~  229 (296)
                      .+++++|+|++  +++|.++++.+ ...|++|++++++.++.     +.+. ..+....   .+..+..+..+.+.+...
T Consensus        19 ~~k~vlITGas~~~giG~~~a~~l-~~~G~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~   97 (267)
T 3gdg_A           19 KGKVVVVTGASGPKGMGIEAARGC-AEMGAAVAITYASRAQGAEENVKELEKTYGIKAKAYKCQVDSYESCEKLVKDVVA   97 (267)
T ss_dssp             TTCEEEETTCCSSSSHHHHHHHHH-HHTSCEEEECBSSSSSHHHHHHHHHHHHHCCCEECCBCCTTCHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCChHHHHHHHH-HHCCCeEEEEeCCcchhHHHHHHHHHHhcCCceeEEecCCCCHHHHHHHHHHHHH
Confidence            57899999998  89999877777 44799999998775433     2222 2243332   233332333333333211


Q ss_pred             -CCcccEEEECCCC
Q psy1959         230 -GKYANVVFEAVGG  242 (296)
Q Consensus       230 -~~g~d~vld~~g~  242 (296)
                       ...+|+++++.|.
T Consensus        98 ~~g~id~li~nAg~  111 (267)
T 3gdg_A           98 DFGQIDAFIANAGA  111 (267)
T ss_dssp             HTSCCSEEEECCCC
T ss_pred             HcCCCCEEEECCCc
Confidence             2379999999984

>1ek6_A UDP-galactose 4-epimerase; short-chain dehydrogenase, galactosemia, isomerase; HET: NAI UPG; 1.50A {Homo sapiens} SCOP: c.2.1.2 PDB: 1ek5_A* 1hzj_A* 1i3k_A* 1i3l_A* 1i3m_A* 1i3n_A*

Probab=95.68  E-value=0.026  Score=49.98  Aligned_cols=76  Identities=16%  Similarity=0.052  Sum_probs=47.3

Q ss_pred             CcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcc----------hHHHHHh-cCCc-EEE--EcCCchhHHHHHHHH
Q psy1959         162 KQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSED----------KTDLIRQ-KGAW-AAL--TFTNEKSLVNKVLEV  227 (296)
Q Consensus       162 g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~----------~~~~~~~-~g~~-~~~--~~~~~~~~~~~i~~~  227 (296)
                      +.+|+|+|++|.+|..+++.+ ...|.+|+++++...          ..+.+.+ .+.. ..+  +..+...+.+.+.+ 
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L-~~~g~~V~~~~r~~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~-   79 (348)
T 1ek6_A            2 AEKVLVTGGAGYIGSHTVLEL-LEAGYLPVVIDNFHNAFRGGGSLPESLRRVQELTGRSVEFEEMDILDQGALQRLFKK-   79 (348)
T ss_dssp             CSEEEEETTTSHHHHHHHHHH-HHTTCCEEEEECSSSSCBCSSSSBHHHHHHHHHHTCCCEEEECCTTCHHHHHHHHHH-
T ss_pred             CCEEEEECCCCHHHHHHHHHH-HHCCCEEEEEecCCcccccccccHHHHHHHHhccCCceEEEECCCCCHHHHHHHHHh-
Confidence            368999999999999988877 446999999987432          2333332 1221 222  23331223222222 


Q ss_pred             hCCCcccEEEECCCC
Q psy1959         228 SGGKYANVVFEAVGG  242 (296)
Q Consensus       228 ~~~~g~d~vld~~g~  242 (296)
                         .++|++|.+.+.
T Consensus        80 ---~~~d~vih~A~~   91 (348)
T 1ek6_A           80 ---YSFMAVIHFAGL   91 (348)
T ss_dssp             ---CCEEEEEECCSC
T ss_pred             ---cCCCEEEECCCC
Confidence               279999999985

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=95.68  E-value=0.1  Score=39.32  Aligned_cols=77  Identities=10%  Similarity=0.137  Sum_probs=52.0

Q ss_pred             CcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHh-cCCcEEEEcCCchhHHHHHHHHhCCCcccEEEECC
Q psy1959         162 KQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQ-KGAWAALTFTNEKSLVNKVLEVSGGKYANVVFEAV  240 (296)
Q Consensus       162 g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~~~g~d~vld~~  240 (296)
                      +.+|+|.|+ |.+|...++.+ ...|.+|+++++++++.+.+++ .+... +..+. .+ .+.+.+. .-.++|+++.++
T Consensus         4 ~m~i~IiG~-G~iG~~~a~~L-~~~g~~v~~~d~~~~~~~~~~~~~~~~~-~~~d~-~~-~~~l~~~-~~~~~d~vi~~~   77 (140)
T 1lss_A            4 GMYIIIAGI-GRVGYTLAKSL-SEKGHDIVLIDIDKDICKKASAEIDALV-INGDC-TK-IKTLEDA-GIEDADMYIAVT   77 (140)
T ss_dssp             -CEEEEECC-SHHHHHHHHHH-HHTTCEEEEEESCHHHHHHHHHHCSSEE-EESCT-TS-HHHHHHT-TTTTCSEEEECC
T ss_pred             CCEEEEECC-CHHHHHHHHHH-HhCCCeEEEEECCHHHHHHHHHhcCcEE-EEcCC-CC-HHHHHHc-CcccCCEEEEee
Confidence            457999997 99999988888 4468999999998888877764 46532 32221 11 1223222 234799999999


Q ss_pred             CCcc
Q psy1959         241 GGED  244 (296)
Q Consensus       241 g~~~  244 (296)
                      +...
T Consensus        78 ~~~~   81 (140)
T 1lss_A           78 GKEE   81 (140)
T ss_dssp             SCHH
T ss_pred             CCch
Confidence            8753

>2et6_A (3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-oxidation, peroxisome, SDR, oxido; 2.22A {Candida tropicalis}

Probab=95.67  E-value=0.053  Score=52.45  Aligned_cols=79  Identities=24%  Similarity=0.305  Sum_probs=50.6

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCc-c-hHHHHHhcCCcEEEEcCCc-h---hHHHHHHHHhCCCccc
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSE-D-KTDLIRQKGAWAALTFTNE-K---SLVNKVLEVSGGKYAN  234 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~-~-~~~~~~~~g~~~~~~~~~~-~---~~~~~i~~~~~~~g~d  234 (296)
                      .|++++|+|+++++|.+.++.+ ...|++|++.++.. + -.+.+++.|........+. .   .+.+.+.+..  ..+|
T Consensus       321 ~gkvalVTGas~GIG~a~A~~l-a~~Ga~Vv~~~~~~~~~~~~~i~~~g~~~~~~~~Dv~~~~~~~~~~~~~~~--G~iD  397 (604)
T 2et6_A          321 KDKVVLITGAGAGLGKEYAKWF-AKYGAKVVVNDFKDATKTVDEIKAAGGEAWPDQHDVAKDSEAIIKNVIDKY--GTID  397 (604)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHH-HHTTCEEEEECSSCCHHHHHHHHHTTCEEEEECCCHHHHHHHHHHHHHHHH--SCCC
T ss_pred             CCCeEEEECcchHHHHHHHHHH-HHCCCEEEEEeCccHHHHHHHHHhcCCeEEEEEcChHHHHHHHHHHHHHhc--CCCC
Confidence            4789999999999999987777 45799999987532 2 2344455555443333332 1   2222333333  2699


Q ss_pred             EEEECCCC
Q psy1959         235 VVFEAVGG  242 (296)
Q Consensus       235 ~vld~~g~  242 (296)
                      +++++.|.
T Consensus       398 iLVnNAGi  405 (604)
T 2et6_A          398 ILVNNAGI  405 (604)
T ss_dssp             EEEECCCC
T ss_pred             EEEECCCC
Confidence            99999983

>2ydy_A Methionine adenosyltransferase 2 subunit beta; oxidoreductase; 2.25A {Homo sapiens} PDB: 2ydx_A

Probab=95.66  E-value=0.023  Score=49.62  Aligned_cols=69  Identities=16%  Similarity=0.231  Sum_probs=38.6

Q ss_pred             CcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCcEEEEcCCchhHHHHHHHHhCCCcccEEEECCC
Q psy1959         162 KQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNKVLEVSGGKYANVVFEAVG  241 (296)
Q Consensus       162 g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~g~d~vld~~g  241 (296)
                      +.+|+|+|++|.+|..+++.+ ...|.+|++++++.++.      + ....+..+...+.+.+...    ++|++|.+.|
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L-~~~g~~V~~~~r~~~~~------~-~~~~Dl~d~~~~~~~~~~~----~~d~vih~A~   69 (315)
T 2ydy_A            2 NRRVLVTGATGLLGRAVHKEF-QQNNWHAVGCGFRRARP------K-FEQVNLLDSNAVHHIIHDF----QPHVIVHCAA   69 (315)
T ss_dssp             CCEEEEETTTSHHHHHHHHHH-HTTTCEEEEEC-------------------------CHHHHHHH----CCSEEEECC-
T ss_pred             CCeEEEECCCcHHHHHHHHHH-HhCCCeEEEEccCCCCC------C-eEEecCCCHHHHHHHHHhh----CCCEEEECCc
Confidence            468999999999999988888 45799999999765431      1 1112222212233333222    5899999987


Q ss_pred             C
Q psy1959         242 G  242 (296)
Q Consensus       242 ~  242 (296)
                      .
T Consensus        70 ~   70 (315)
T 2ydy_A           70 E   70 (315)
T ss_dssp             -
T ss_pred             c
Confidence            4

>2pk3_A GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, short-chain dehydrogenase/reductase, rossmann fold, oxidoreductase; HET: A2R GDD; 1.82A {Aneurinibacillus thermoaerophilus}

Probab=95.65  E-value=0.015  Score=51.01  Aligned_cols=75  Identities=12%  Similarity=0.182  Sum_probs=47.2

Q ss_pred             CCCCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCcEE-EEcCCchhHHHHHHHHhCCCcccEEE
Q psy1959         159 LKEKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAA-LTFTNEKSLVNKVLEVSGGKYANVVF  237 (296)
Q Consensus       159 ~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~i~~~~~~~g~d~vl  237 (296)
                      .++..+|||+|++|.+|..+++.+ ...|.+|++++++.++ +.   ++...+ .+..+...+.+.+..    ..+|++|
T Consensus         9 ~~~~~~vlVTGatG~iG~~l~~~L-~~~G~~V~~~~r~~~~-~~---l~~~~~~~Dl~d~~~~~~~~~~----~~~d~vi   79 (321)
T 2pk3_A            9 HHGSMRALITGVAGFVGKYLANHL-TEQNVEVFGTSRNNEA-KL---PNVEMISLDIMDSQRVKKVISD----IKPDYIF   79 (321)
T ss_dssp             ----CEEEEETTTSHHHHHHHHHH-HHTTCEEEEEESCTTC-CC---TTEEEEECCTTCHHHHHHHHHH----HCCSEEE
T ss_pred             ccCcceEEEECCCChHHHHHHHHH-HHCCCEEEEEecCCcc-cc---ceeeEEECCCCCHHHHHHHHHh----cCCCEEE
Confidence            456789999999999999988887 4479999999987665 21   222111 223331223222222    3589999


Q ss_pred             ECCCC
Q psy1959         238 EAVGG  242 (296)
Q Consensus       238 d~~g~  242 (296)
                      .+.+.
T Consensus        80 h~A~~   84 (321)
T 2pk3_A           80 HLAAK   84 (321)
T ss_dssp             ECCSC
T ss_pred             EcCcc
Confidence            99885

>2q1w_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, sugar binding protein; HET: NAD; 2.19A {Bordetella bronchiseptica}

Probab=95.62  E-value=0.017  Score=51.18  Aligned_cols=77  Identities=14%  Similarity=0.238  Sum_probs=47.3

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchH-HHHHhcCCcEEE--EcCCchhHHHHHHHHhCCCcccEEE
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKT-DLIRQKGAWAAL--TFTNEKSLVNKVLEVSGGKYANVVF  237 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~-~~~~~~g~~~~~--~~~~~~~~~~~i~~~~~~~g~d~vl  237 (296)
                      .+.+|+|+|++|.+|..+++.+ ...|.+|++++++..+. +.+.++.....+  +..+..    .+.++..+..+|++|
T Consensus        20 ~~~~vlVTGatG~iG~~l~~~L-~~~g~~V~~~~r~~~~~~~~l~~~~~~~~~~~Dl~d~~----~~~~~~~~~~~D~vi   94 (333)
T 2q1w_A           20 HMKKVFITGICGQIGSHIAELL-LERGDKVVGIDNFATGRREHLKDHPNLTFVEGSIADHA----LVNQLIGDLQPDAVV   94 (333)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHH-HHTTCEEEEEECCSSCCGGGSCCCTTEEEEECCTTCHH----HHHHHHHHHCCSEEE
T ss_pred             CCCEEEEeCCccHHHHHHHHHH-HHCCCEEEEEECCCccchhhHhhcCCceEEEEeCCCHH----HHHHHHhccCCcEEE
Confidence            4678999999999999988877 44699999999865432 222221111222  223312    233322112589999


Q ss_pred             ECCCC
Q psy1959         238 EAVGG  242 (296)
Q Consensus       238 d~~g~  242 (296)
                      .+.+.
T Consensus        95 h~A~~   99 (333)
T 2q1w_A           95 HTAAS   99 (333)
T ss_dssp             ECCCC
T ss_pred             ECcee
Confidence            99885

>2yut_A Putative short-chain oxidoreductase; alpha and beta proteins (A/B), NAD(P)-binding rossmann-fold structural genomics, NPPSFA; HET: NAP; 2.20A {Thermus thermophilus}

Probab=95.60  E-value=0.013  Score=47.85  Aligned_cols=73  Identities=25%  Similarity=0.227  Sum_probs=48.3

Q ss_pred             cEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHh-cCCcEE--EEcCCchhHHHHHHHHhCCCcccEEEEC
Q psy1959         163 QTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQ-KGAWAA--LTFTNEKSLVNKVLEVSGGKYANVVFEA  239 (296)
Q Consensus       163 ~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~-~g~~~~--~~~~~~~~~~~~i~~~~~~~g~d~vld~  239 (296)
                      ++++|+|++|++|..+++.+ ...  +|+++++++++.+.+.+ .+. ..  .+..+..++.+.+.+ .  .++|+++++
T Consensus         1 k~vlVtGasg~iG~~la~~l-~~~--~V~~~~r~~~~~~~~~~~~~~-~~~~~D~~~~~~~~~~~~~-~--~~id~vi~~   73 (207)
T 2yut_A            1 MRVLITGATGGLGGAFARAL-KGH--DLLLSGRRAGALAELAREVGA-RALPADLADELEAKALLEE-A--GPLDLLVHA   73 (207)
T ss_dssp             CEEEEETTTSHHHHHHHHHT-TTS--EEEEECSCHHHHHHHHHHHTC-EECCCCTTSHHHHHHHHHH-H--CSEEEEEEC
T ss_pred             CEEEEEcCCcHHHHHHHHHH-HhC--CEEEEECCHHHHHHHHHhccC-cEEEeeCCCHHHHHHHHHh-c--CCCCEEEEC
Confidence            36899999999999988777 333  99999998887766543 332 22  222332333333333 2  379999999


Q ss_pred             CCC
Q psy1959         240 VGG  242 (296)
Q Consensus       240 ~g~  242 (296)
                      .|.
T Consensus        74 ag~   76 (207)
T 2yut_A           74 VGK   76 (207)
T ss_dssp             CCC
T ss_pred             CCc
Confidence            884

>2c5a_A GDP-mannose-3', 5'-epimerase; short chain dehydratase/reductase, GDP-gulose, GDP-galactose, keto intermediate, vitamin C, SDR; HET: GDC NAD BTB; 1.4A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2c59_A* 2c54_A* 2c5e_A*

Probab=95.59  E-value=0.018  Score=51.95  Aligned_cols=74  Identities=15%  Similarity=0.065  Sum_probs=49.3

Q ss_pred             CcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCcEE-EEcCCchhHHHHHHHHhCCCcccEEEECC
Q psy1959         162 KQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAA-LTFTNEKSLVNKVLEVSGGKYANVVFEAV  240 (296)
Q Consensus       162 g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~i~~~~~~~g~d~vld~~  240 (296)
                      +.+|+|+|++|.+|..+++.+ ...|.+|++++++.++.......+...+ .+..+    .+.+.++.  +++|++|.+.
T Consensus        29 ~~~vlVtGatG~iG~~l~~~L-~~~g~~V~~~~r~~~~~~~~~~~~v~~~~~Dl~d----~~~~~~~~--~~~d~Vih~A  101 (379)
T 2c5a_A           29 NLKISITGAGGFIASHIARRL-KHEGHYVIASDWKKNEHMTEDMFCDEFHLVDLRV----MENCLKVT--EGVDHVFNLA  101 (379)
T ss_dssp             CCEEEEETTTSHHHHHHHHHH-HHTTCEEEEEESSCCSSSCGGGTCSEEEECCTTS----HHHHHHHH--TTCSEEEECC
T ss_pred             CCeEEEECCccHHHHHHHHHH-HHCCCeEEEEECCCccchhhccCCceEEECCCCC----HHHHHHHh--CCCCEEEECc
Confidence            568999999999999988877 4469999999987665432222233222 22222    22344444  2799999998


Q ss_pred             CC
Q psy1959         241 GG  242 (296)
Q Consensus       241 g~  242 (296)
                      +.
T Consensus       102 ~~  103 (379)
T 2c5a_A          102 AD  103 (379)
T ss_dssp             CC
T ss_pred             ee
Confidence            84

>3icc_A Putative 3-oxoacyl-(acyl carrier protein) reducta; structural genomics, putative 3-oxoacyl-(acyl carrier protei reductase, oxidoreductase; HET: NAP MES; 1.87A {Bacillus anthracis str}

Probab=95.59  E-value=0.033  Score=47.11  Aligned_cols=81  Identities=17%  Similarity=0.152  Sum_probs=48.9

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEE-eCCcchHHHH----HhcCCcEEE---EcCCchhHHHHHHHH---h-
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGV-CNSEDKTDLI----RQKGAWAAL---TFTNEKSLVNKVLEV---S-  228 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~-~~~~~~~~~~----~~~g~~~~~---~~~~~~~~~~~i~~~---~-  228 (296)
                      .+++++|+|+++++|.+.++.+ ...|++|+++ .+++++.+.+    ++.+.....   +..+..+....+.+.   . 
T Consensus         6 ~~k~vlITGas~gIG~~~a~~l-~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~   84 (255)
T 3icc_A            6 KGKVALVTGASRGIGRAIAKRL-ANDGALVAIHYGNRKEEAEETVYEIQSNGGSAFSIGANLESLHGVEALYSSLDNELQ   84 (255)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHH-HHTTCEEEEEESSCSHHHHHHHHHHHHTTCEEEEEECCTTSHHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCChHHHHHHHHH-HHCCCeEEEEeCCchHHHHHHHHHHHhcCCceEEEecCcCCHHHHHHHHHHHHHHhc
Confidence            5789999999999999988777 4579999886 4454444332    233433222   222312222222221   1 


Q ss_pred             ---CCCcccEEEECCCC
Q psy1959         229 ---GGKYANVVFEAVGG  242 (296)
Q Consensus       229 ---~~~g~d~vld~~g~  242 (296)
                         +...+|+++++.|.
T Consensus        85 ~~~~~~~id~lv~nAg~  101 (255)
T 3icc_A           85 NRTGSTKFDILINNAGI  101 (255)
T ss_dssp             HHHSSSCEEEEEECCCC
T ss_pred             ccccCCcccEEEECCCC
Confidence               12349999999984

>1jtv_A 17 beta-hydroxysteroid dehydrogenase type 1; steroid hormones, alternative binding mode, oxidoreductase; HET: TES; 1.54A {Homo sapiens} SCOP: c.2.1.2 PDB: 1dht_A* 1equ_A* 1bhs_A* 1i5r_A* 1qyv_A* 1qyw_A* 1qyx_A* 3dey_X* 3dhe_A* 3hb4_X* 3hb5_X* 3klp_X* 3km0_A* 1iol_A* 1fds_A* 1fdt_A* 3klm_X* 1fdw_A* 1fdu_A* 1fdv_A* ...

Probab=95.54  E-value=0.015  Score=51.65  Aligned_cols=79  Identities=18%  Similarity=0.169  Sum_probs=48.9

Q ss_pred             CcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHH----HHHhc------CCcE-E--EEcCCchhHHHHHHHHh
Q psy1959         162 KQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTD----LIRQK------GAWA-A--LTFTNEKSLVNKVLEVS  228 (296)
Q Consensus       162 g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~----~~~~~------g~~~-~--~~~~~~~~~~~~i~~~~  228 (296)
                      +++++|+|++|++|.+++..+ ...|++|+.+.++.++.+    .+++.      +... .  .+..+..++.+.+.+..
T Consensus         2 ~k~vlVTGas~GIG~ala~~L-~~~G~~v~~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~   80 (327)
T 1jtv_A            2 RTVVLITGCSSGIGLHLAVRL-ASDPSQSFKVYATLRDLKTQGRLWEAARALACPPGSLETLQLDVRDSKSVAAARERVT   80 (327)
T ss_dssp             CEEEEESCCSSHHHHHHHHHH-HTCTTCCEEEEEEESCGGGTHHHHHHHHHTTCCTTSEEEEECCTTCHHHHHHHHHTCT
T ss_pred             CCEEEEECCCCHHHHHHHHHH-HHCCCceEEEEeecCcHHHHHHHHHHhhhccCCCCceEEEEecCCCHHHHHHHHHHHh
Confidence            678999999999999988877 457998887776544322    22221      1222 2  23333233333343332


Q ss_pred             CCCcccEEEECCCC
Q psy1959         229 GGKYANVVFEAVGG  242 (296)
Q Consensus       229 ~~~g~d~vld~~g~  242 (296)
                       ...+|+++++.|.
T Consensus        81 -~g~iD~lVnnAG~   93 (327)
T 1jtv_A           81 -EGRVDVLVCNAGL   93 (327)
T ss_dssp             -TSCCSEEEECCCC
T ss_pred             -cCCCCEEEECCCc
Confidence             3469999999873

>1sb8_A WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCNAC, SDR, G SYK, UDP, N-acetylglucosamine, N- acetylgalactosamine, UDP-GLC, isomerase; HET: NAD UD2; 2.10A {Pseudomonas aeruginosa} SCOP: c.2.1.2 PDB: 1sb9_A*

Probab=95.54  E-value=0.063  Score=47.67  Aligned_cols=76  Identities=14%  Similarity=0.169  Sum_probs=48.9

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcc----hHHHHHh-------cCCcEEEEcCCchhHHHHHHHHhC
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSED----KTDLIRQ-------KGAWAALTFTNEKSLVNKVLEVSG  229 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~----~~~~~~~-------~g~~~~~~~~~~~~~~~~i~~~~~  229 (296)
                      .+.+|+|+|++|.+|..+++.+ ...|.+|++++++..    +.+.+.+       .+. ..+..+- .+ .+.+.++..
T Consensus        26 ~~~~vlVtGatG~iG~~l~~~L-~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Dl-~d-~~~~~~~~~  101 (352)
T 1sb8_A           26 QPKVWLITGVAGFIGSNLLETL-LKLDQKVVGLDNFATGHQRNLDEVRSLVSEKQWSNF-KFIQGDI-RN-LDDCNNACA  101 (352)
T ss_dssp             SCCEEEEETTTSHHHHHHHHHH-HHTTCEEEEEECCSSCCHHHHHHHHHHSCHHHHTTE-EEEECCT-TS-HHHHHHHHT
T ss_pred             cCCeEEEECCCcHHHHHHHHHH-HHCCCEEEEEeCCCccchhhHHHHhhhcccccCCce-EEEECCC-CC-HHHHHHHhc
Confidence            3578999999999999988887 446999999998653    2332221       122 2222211 11 233444443


Q ss_pred             CCcccEEEECCCC
Q psy1959         230 GKYANVVFEAVGG  242 (296)
Q Consensus       230 ~~g~d~vld~~g~  242 (296)
                        ++|++|.+.+.
T Consensus       102 --~~d~vih~A~~  112 (352)
T 1sb8_A          102 --GVDYVLHQAAL  112 (352)
T ss_dssp             --TCSEEEECCSC
T ss_pred             --CCCEEEECCcc
Confidence              79999999985

>1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.50A {Thuja plicata} SCOP: c.2.1.2

Probab=95.52  E-value=0.019  Score=50.11  Aligned_cols=74  Identities=22%  Similarity=0.309  Sum_probs=49.5

Q ss_pred             CcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCc-----chHHHHH---hcCCcEE-EEcCCchhHHHHHHHHhCCCc
Q psy1959         162 KQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSE-----DKTDLIR---QKGAWAA-LTFTNEKSLVNKVLEVSGGKY  232 (296)
Q Consensus       162 g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~-----~~~~~~~---~~g~~~~-~~~~~~~~~~~~i~~~~~~~g  232 (296)
                      ..+|+|+|++|.+|..+++.+ ...|.+|++++++.     ++.+.++   ..++..+ .+..+    .+.+.++..  +
T Consensus         4 ~~~ilVtGatG~iG~~l~~~L-~~~g~~V~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d----~~~l~~~~~--~   76 (313)
T 1qyd_A            4 KSRVLIVGGTGYIGKRIVNAS-ISLGHPTYVLFRPEVVSNIDKVQMLLYFKQLGAKLIEASLDD----HQRLVDALK--Q   76 (313)
T ss_dssp             CCCEEEESTTSTTHHHHHHHH-HHTTCCEEEECCSCCSSCHHHHHHHHHHHTTTCEEECCCSSC----HHHHHHHHT--T
T ss_pred             CCEEEEEcCCcHHHHHHHHHH-HhCCCcEEEEECCCcccchhHHHHHHHHHhCCeEEEeCCCCC----HHHHHHHHh--C
Confidence            357999999999999998888 44689999999874     3443333   2344322 23333    234444443  6


Q ss_pred             ccEEEECCCC
Q psy1959         233 ANVVFEAVGG  242 (296)
Q Consensus       233 ~d~vld~~g~  242 (296)
                      +|+||.+.+.
T Consensus        77 ~d~vi~~a~~   86 (313)
T 1qyd_A           77 VDVVISALAG   86 (313)
T ss_dssp             CSEEEECCCC
T ss_pred             CCEEEECCcc
Confidence            9999999874

>1db3_A GDP-mannose 4,6-dehydratase; NADP, GDP-fucose, lyase; 2.30A {Escherichia coli} SCOP: c.2.1.2

Probab=95.51  E-value=0.025  Score=50.64  Aligned_cols=36  Identities=17%  Similarity=0.154  Sum_probs=28.2

Q ss_pred             cEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcch
Q psy1959         163 QTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDK  199 (296)
Q Consensus       163 ~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~  199 (296)
                      .+|+|+|++|.+|..+++.+ ...|.+|++++++.++
T Consensus         2 ~~vlVtGatG~iG~~l~~~L-~~~g~~V~~~~r~~~~   37 (372)
T 1db3_A            2 KVALITGVTGQDGSYLAEFL-LEKGYEVHGIKRRASS   37 (372)
T ss_dssp             CEEEEETTTSHHHHHHHHHH-HHTTCEEEEECC----
T ss_pred             CEEEEECCCChHHHHHHHHH-HHCCCEEEEEECCCcc
Confidence            57999999999999988877 4469999999987654

>3u0b_A Oxidoreductase, short chain dehydrogenase/reducta protein; structural genomics, ssgcid; 1.70A {Mycobacterium smegmatis} PDB: 3lls_A 3v1t_C 3v1u_A* 4fw8_A* 3q6i_A* 3m1l_A

Probab=95.51  E-value=0.029  Score=52.40  Aligned_cols=81  Identities=17%  Similarity=0.245  Sum_probs=52.0

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcch--HH-HHHhcCCcEE-EEcCCchhHHHHHHHHhC--CCccc
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDK--TD-LIRQKGAWAA-LTFTNEKSLVNKVLEVSG--GKYAN  234 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~--~~-~~~~~g~~~~-~~~~~~~~~~~~i~~~~~--~~g~d  234 (296)
                      ++++++|+|++|++|.++++.+ ...|++|+++++++..  .. ...+.+...+ .+..+..+..+.+.+...  +..+|
T Consensus       212 ~gk~~LVTGgsgGIG~aiA~~L-a~~Ga~Vvl~~r~~~~~~l~~~~~~~~~~~~~~Dvtd~~~v~~~~~~~~~~~g~~id  290 (454)
T 3u0b_A          212 DGKVAVVTGAARGIGATIAEVF-ARDGATVVAIDVDGAAEDLKRVADKVGGTALTLDVTADDAVDKITAHVTEHHGGKVD  290 (454)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHH-HHTTCEEEEEECGGGHHHHHHHHHHHTCEEEECCTTSTTHHHHHHHHHHHHSTTCCS
T ss_pred             CCCEEEEeCCchHHHHHHHHHH-HHCCCEEEEEeCCccHHHHHHHHHHcCCeEEEEecCCHHHHHHHHHHHHHHcCCCce
Confidence            5789999999999999988777 4469999999875432  22 2234454322 333442344444433321  22499


Q ss_pred             EEEECCCC
Q psy1959         235 VVFEAVGG  242 (296)
Q Consensus       235 ~vld~~g~  242 (296)
                      ++|++.|.
T Consensus       291 ~lV~nAGv  298 (454)
T 3u0b_A          291 ILVNNAGI  298 (454)
T ss_dssp             EEEECCCC
T ss_pred             EEEECCcc
Confidence            99999984

>2bll_A Protein YFBG; decarboxylase, short chain dehydrogenase, L-ARA4N biosynthes methyltransferase, transferase; 2.3A {Escherichia coli} SCOP: c.2.1.2 PDB: 1u9j_A 1z73_A 1z75_A 1z7b_A 1z74_A

Probab=95.48  E-value=0.023  Score=50.16  Aligned_cols=75  Identities=15%  Similarity=0.026  Sum_probs=46.8

Q ss_pred             EEEEEcCCCcHHHHHHHHHHHhC-CCEEEEEeCCcchHHHHHhcCCcEEEEcCCchhHHHHHHHHhCCCcccEEEECCCC
Q psy1959         164 TVLVTAAGGGLGLAAVDMATKIY-KAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNKVLEVSGGKYANVVFEAVGG  242 (296)
Q Consensus       164 ~vlI~Ga~g~vG~aa~~la~~~~-g~~Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~g~d~vld~~g~  242 (296)
                      +|+|+|++|.+|..+++.+ ... |.+|++++++.++.+.+.+......+..+- .+..+.+.+..  +++|+||.+.+.
T Consensus         2 ~vlVtGatG~iG~~l~~~L-~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~D~-~~~~~~~~~~~--~~~d~vih~A~~   77 (345)
T 2bll_A            2 RVLILGVNGFIGNHLTERL-LREDHYEVYGLDIGSDAISRFLNHPHFHFVEGDI-SIHSEWIEYHV--KKCDVVLPLVAI   77 (345)
T ss_dssp             EEEEETCSSHHHHHHHHHH-HHSTTCEEEEEESCCGGGGGGTTCTTEEEEECCT-TTCSHHHHHHH--HHCSEEEECBCC
T ss_pred             eEEEECCCcHHHHHHHHHH-HHhCCCEEEEEeCCcchHHHhhcCCCeEEEeccc-cCcHHHHHhhc--cCCCEEEEcccc
Confidence            6999999999999988887 445 899999999877654332221112222211 11111232222  268999998874

>3slk_A Polyketide synthase extender module 2; rossmann fold, NADPH, oxidoreductase; HET: NDP; 3.00A {Saccharopolyspora spinosa}

Probab=95.42  E-value=0.043  Score=54.85  Aligned_cols=84  Identities=19%  Similarity=0.209  Sum_probs=55.9

Q ss_pred             CCCCcEEEEEcCCCcHHHHHHHHHHHhCCC-EEEEEeCCc---chH----HHHHhcCCcEEE---EcCCchhHHHHHHHH
Q psy1959         159 LKEKQTVLVTAAGGGLGLAAVDMATKIYKA-KVIGVCNSE---DKT----DLIRQKGAWAAL---TFTNEKSLVNKVLEV  227 (296)
Q Consensus       159 ~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~-~Vi~~~~~~---~~~----~~~~~~g~~~~~---~~~~~~~~~~~i~~~  227 (296)
                      ++++.+++|+|++|++|.+.++.+....|+ .|+.++++.   ++.    +.+++.|....+   +..+..+..+.+.+.
T Consensus       527 ~~~~~~~lItGg~~GlG~aiA~~la~~~Ga~~vvl~~R~~~~~~~~~~~~~~l~~~G~~v~~~~~Dvsd~~~v~~~~~~~  606 (795)
T 3slk_A          527 WDAAGTVLVTGGTGALGAEVARHLVIERGVRNLVLVSRRGPAASGAAELVAQLTAYGAEVSLQACDVADRETLAKVLASI  606 (795)
T ss_dssp             CCTTSEEEEETTTSHHHHHHHHHHHHTSSCCEEEEEESSGGGSTTHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHTS
T ss_pred             cccccceeeccCCCCcHHHHHHHHHHHcCCcEEEEeccCccchHHHHHHHHHHHhcCCcEEEEEeecCCHHHHHHHHHHH
Confidence            467899999999999999988877225798 588888873   222    334455765432   333424444445444


Q ss_pred             hCCCcccEEEECCCC
Q psy1959         228 SGGKYANVVFEAVGG  242 (296)
Q Consensus       228 ~~~~g~d~vld~~g~  242 (296)
                      .....+|+++++.|.
T Consensus       607 ~~~~~id~lVnnAGv  621 (795)
T 3slk_A          607 PDEHPLTAVVHAAGV  621 (795)
T ss_dssp             CTTSCEEEEEECCCC
T ss_pred             HHhCCCEEEEECCCc
Confidence            333379999999984

>3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A*

Probab=95.39  E-value=0.067  Score=46.32  Aligned_cols=64  Identities=19%  Similarity=0.154  Sum_probs=47.4

Q ss_pred             CcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCcEEEEcCCchhHHHHHHHHhCCCcccEEEECCC
Q psy1959         162 KQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNKVLEVSGGKYANVVFEAVG  241 (296)
Q Consensus       162 g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~g~d~vld~~g  241 (296)
                      +++++|+|+ |+.|.+++..+ ...|.+|+++.|+.+|.+.+.+++. ....+.+   +          ..+|++++|+.
T Consensus       118 ~k~vlvlGa-GGaaraia~~L-~~~G~~v~V~nRt~~ka~~la~~~~-~~~~~~~---l----------~~~DiVInaTp  181 (269)
T 3phh_A          118 YQNALILGA-GGSAKALACEL-KKQGLQVSVLNRSSRGLDFFQRLGC-DCFMEPP---K----------SAFDLIINATS  181 (269)
T ss_dssp             CCEEEEECC-SHHHHHHHHHH-HHTTCEEEEECSSCTTHHHHHHHTC-EEESSCC---S----------SCCSEEEECCT
T ss_pred             CCEEEEECC-CHHHHHHHHHH-HHCCCEEEEEeCCHHHHHHHHHCCC-eEecHHH---h----------ccCCEEEEccc
Confidence            889999997 99999988877 4467999999999998876666663 2222222   0          16788888765

>1vl0_A DTDP-4-dehydrorhamnose reductase, RFBD ortholog; structural joint center for structural genomics, JCSG, protein structu initiative; HET: NAI UNL; 2.05A {Clostridium acetobutylicum} SCOP: c.2.1.2

Probab=95.36  E-value=0.035  Score=47.86  Aligned_cols=65  Identities=25%  Similarity=0.216  Sum_probs=44.8

Q ss_pred             CCCCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCcEEEEcCCchhHHHHHHHHhCCCcccEEEE
Q psy1959         159 LKEKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNKVLEVSGGKYANVVFE  238 (296)
Q Consensus       159 ~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~g~d~vld  238 (296)
                      .++..+|+|+|++|.+|..+++.+ ...|.+|+++++++              .+..+...+.+.+.+.    ++|++|.
T Consensus         9 ~~~~~~vlVtGatG~iG~~l~~~L-~~~g~~V~~~~r~~--------------~Dl~d~~~~~~~~~~~----~~d~vih   69 (292)
T 1vl0_A            9 HHHHMKILITGANGQLGREIQKQL-KGKNVEVIPTDVQD--------------LDITNVLAVNKFFNEK----KPNVVIN   69 (292)
T ss_dssp             ---CEEEEEESTTSHHHHHHHHHH-TTSSEEEEEECTTT--------------CCTTCHHHHHHHHHHH----CCSEEEE
T ss_pred             ccccceEEEECCCChHHHHHHHHH-HhCCCeEEeccCcc--------------CCCCCHHHHHHHHHhc----CCCEEEE
Confidence            456789999999999999998888 55789999998752              1223323333333322    6899999


Q ss_pred             CCCC
Q psy1959         239 AVGG  242 (296)
Q Consensus       239 ~~g~  242 (296)
                      +.+.
T Consensus        70 ~A~~   73 (292)
T 1vl0_A           70 CAAH   73 (292)
T ss_dssp             CCCC
T ss_pred             CCcc
Confidence            9885

>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33

Probab=95.32  E-value=0.034  Score=47.51  Aligned_cols=94  Identities=12%  Similarity=0.096  Sum_probs=66.5

Q ss_pred             CCCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCcEEEEcCCchhHHHHHHHHhCCCcccEEEEC
Q psy1959         160 KEKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNKVLEVSGGKYANVVFEA  239 (296)
Q Consensus       160 ~~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~g~d~vld~  239 (296)
                      .++.+||-.|+ |. |..+..+++...+.+|++++.+++..+.+++.+....+...+..++.      .....+|+|+..
T Consensus        84 ~~~~~vLdiG~-G~-G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~~------~~~~~fD~v~~~  155 (269)
T 1p91_A           84 DKATAVLDIGC-GE-GYYTHAFADALPEITTFGLDVSKVAIKAAAKRYPQVTFCVASSHRLP------FSDTSMDAIIRI  155 (269)
T ss_dssp             TTCCEEEEETC-TT-STTHHHHHHTCTTSEEEEEESCHHHHHHHHHHCTTSEEEECCTTSCS------BCTTCEEEEEEE
T ss_pred             CCCCEEEEECC-CC-CHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHhCCCcEEEEcchhhCC------CCCCceeEEEEe
Confidence            57899999997 66 88888999432378999999999999998876543222222211110      123479999976


Q ss_pred             CCCccHHHHHHHhhccCceEEee
Q psy1959         240 VGGEDKTDLIRQKGAWAALTFTN  262 (296)
Q Consensus       240 ~g~~~~~~~~~~lg~~~g~~~~~  262 (296)
                      .....+..+.+.| +++|.+.+.
T Consensus       156 ~~~~~l~~~~~~L-~pgG~l~~~  177 (269)
T 1p91_A          156 YAPCKAEELARVV-KPGGWVITA  177 (269)
T ss_dssp             SCCCCHHHHHHHE-EEEEEEEEE
T ss_pred             CChhhHHHHHHhc-CCCcEEEEE
Confidence            5557899999999 888887543

>1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP: c.2.1.2

Probab=95.31  E-value=0.021  Score=49.72  Aligned_cols=74  Identities=18%  Similarity=0.242  Sum_probs=48.9

Q ss_pred             CcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcc------hHHHHH---hcCCcEE-EEcCCchhHHHHHHHHhCCC
Q psy1959         162 KQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSED------KTDLIR---QKGAWAA-LTFTNEKSLVNKVLEVSGGK  231 (296)
Q Consensus       162 g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~------~~~~~~---~~g~~~~-~~~~~~~~~~~~i~~~~~~~  231 (296)
                      ..+|+|+|++|.+|..+++.+ ...|.+|++++++..      +.+.++   ..++..+ .+..+    .+.+.++..  
T Consensus         4 ~~~ilVtGatG~iG~~l~~~L-~~~g~~V~~l~R~~~~~~~~~~~~~~~~l~~~~v~~v~~D~~d----~~~l~~~~~--   76 (308)
T 1qyc_A            4 RSRILLIGATGYIGRHVAKAS-LDLGHPTFLLVRESTASSNSEKAQLLESFKASGANIVHGSIDD----HASLVEAVK--   76 (308)
T ss_dssp             CCCEEEESTTSTTHHHHHHHH-HHTTCCEEEECCCCCTTTTHHHHHHHHHHHTTTCEEECCCTTC----HHHHHHHHH--
T ss_pred             CCEEEEEcCCcHHHHHHHHHH-HhCCCCEEEEECCcccccCHHHHHHHHHHHhCCCEEEEeccCC----HHHHHHHHc--
Confidence            457999999999999998888 446899999998743      333332   3354322 23333    223333332  


Q ss_pred             cccEEEECCCC
Q psy1959         232 YANVVFEAVGG  242 (296)
Q Consensus       232 g~d~vld~~g~  242 (296)
                      ++|+||.+.+.
T Consensus        77 ~~d~vi~~a~~   87 (308)
T 1qyc_A           77 NVDVVISTVGS   87 (308)
T ss_dssp             TCSEEEECCCG
T ss_pred             CCCEEEECCcc
Confidence            68999999986

>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus}

Probab=95.29  E-value=0.19  Score=41.12  Aligned_cols=98  Identities=14%  Similarity=0.111  Sum_probs=67.1

Q ss_pred             HHcCCCCCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHh----cCCc--EEEEcCCchhHHHHHHHHh
Q psy1959         155 RHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQ----KGAW--AALTFTNEKSLVNKVLEVS  228 (296)
Q Consensus       155 ~~~~~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~----~g~~--~~~~~~~~~~~~~~i~~~~  228 (296)
                      ....++++++||-.|+ |. |..+..++ +. +.+|+.++.+++..+.+++    .+..  ..+...+..+   .+   .
T Consensus        49 ~~l~~~~~~~vLDlGc-G~-G~~~~~la-~~-~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~---~~---~  118 (204)
T 3njr_A           49 AALAPRRGELLWDIGG-GS-GSVSVEWC-LA-GGRAITIEPRADRIENIQKNIDTYGLSPRMRAVQGTAPA---AL---A  118 (204)
T ss_dssp             HHHCCCTTCEEEEETC-TT-CHHHHHHH-HT-TCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCTTG---GG---T
T ss_pred             HhcCCCCCCEEEEecC-CC-CHHHHHHH-Hc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEeCchhh---hc---c
Confidence            4557889999999997 54 88899999 54 8899999999998877764    3543  2222222111   11   1


Q ss_pred             CCCcccEEEECCCC--ccHHHHHHHhhccCceEEeec
Q psy1959         229 GGKYANVVFEAVGG--EDKTDLIRQKGAWAALTFTNE  263 (296)
Q Consensus       229 ~~~g~d~vld~~g~--~~~~~~~~~lg~~~g~~~~~~  263 (296)
                      ....+|+++...+.  +.+..+.+.| +++|.+.+..
T Consensus       119 ~~~~~D~v~~~~~~~~~~l~~~~~~L-kpgG~lv~~~  154 (204)
T 3njr_A          119 DLPLPEAVFIGGGGSQALYDRLWEWL-APGTRIVANA  154 (204)
T ss_dssp             TSCCCSEEEECSCCCHHHHHHHHHHS-CTTCEEEEEE
T ss_pred             cCCCCCEEEECCcccHHHHHHHHHhc-CCCcEEEEEe
Confidence            12368999976654  2577788888 8999886643

>3c1o_A Eugenol synthase; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, oxidoreductase; HET: NAP; 1.80A {Clarkia breweri}

Probab=95.27  E-value=0.019  Score=50.34  Aligned_cols=84  Identities=13%  Similarity=0.142  Sum_probs=54.4

Q ss_pred             CcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCc------chHHHH---HhcCCcEE-EEcCCchhHHHHHHHHhCCC
Q psy1959         162 KQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSE------DKTDLI---RQKGAWAA-LTFTNEKSLVNKVLEVSGGK  231 (296)
Q Consensus       162 g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~------~~~~~~---~~~g~~~~-~~~~~~~~~~~~i~~~~~~~  231 (296)
                      ..+|+|+|++|.+|..+++.+ ...|.+|++++++.      ++.+.+   ...++..+ .+..+    .+.+.++..  
T Consensus         4 ~~~ilVtGatG~iG~~l~~~L-~~~g~~V~~~~R~~~~~~~~~~~~~l~~~~~~~v~~v~~D~~d----~~~l~~a~~--   76 (321)
T 3c1o_A            4 MEKIIIYGGTGYIGKFMVRAS-LSFSHPTFIYARPLTPDSTPSSVQLREEFRSMGVTIIEGEMEE----HEKMVSVLK--   76 (321)
T ss_dssp             CCCEEEETTTSTTHHHHHHHH-HHTTCCEEEEECCCCTTCCHHHHHHHHHHHHTTCEEEECCTTC----HHHHHHHHT--
T ss_pred             ccEEEEEcCCchhHHHHHHHH-HhCCCcEEEEECCcccccChHHHHHHHHhhcCCcEEEEecCCC----HHHHHHHHc--
Confidence            357999999999999988887 44689999999875      233333   23354332 23333    234445443  


Q ss_pred             cccEEEECCCCc---cHHHHHHHh
Q psy1959         232 YANVVFEAVGGE---DKTDLIRQK  252 (296)
Q Consensus       232 g~d~vld~~g~~---~~~~~~~~l  252 (296)
                      ++|++|.+.+..   .....++.+
T Consensus        77 ~~d~vi~~a~~~~~~~~~~l~~aa  100 (321)
T 3c1o_A           77 QVDIVISALPFPMISSQIHIINAI  100 (321)
T ss_dssp             TCSEEEECCCGGGSGGGHHHHHHH
T ss_pred             CCCEEEECCCccchhhHHHHHHHH
Confidence            699999999852   334445554

>2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, plant protein; HET: NDP; 1.50A {Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A* 3c3x_A* 2qw8_A*

Probab=95.25  E-value=0.019  Score=50.29  Aligned_cols=83  Identities=18%  Similarity=0.199  Sum_probs=54.4

Q ss_pred             cEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcc-hHHHH---HhcCCcEE-EEcCCchhHHHHHHHHhCCCcccEEE
Q psy1959         163 QTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSED-KTDLI---RQKGAWAA-LTFTNEKSLVNKVLEVSGGKYANVVF  237 (296)
Q Consensus       163 ~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~-~~~~~---~~~g~~~~-~~~~~~~~~~~~i~~~~~~~g~d~vl  237 (296)
                      ++|+|+|++|.+|..+++.+ ...|.+|++++++.+ +.+.+   ...++..+ .+..+    .+.+.++..  ++|+||
T Consensus        12 ~~ilVtGatG~iG~~l~~~L-~~~g~~V~~l~R~~~~~~~~~~~l~~~~v~~v~~Dl~d----~~~l~~a~~--~~d~vi   84 (318)
T 2r6j_A           12 SKILIFGGTGYIGNHMVKGS-LKLGHPTYVFTRPNSSKTTLLDEFQSLGAIIVKGELDE----HEKLVELMK--KVDVVI   84 (318)
T ss_dssp             CCEEEETTTSTTHHHHHHHH-HHTTCCEEEEECTTCSCHHHHHHHHHTTCEEEECCTTC----HHHHHHHHT--TCSEEE
T ss_pred             CeEEEECCCchHHHHHHHHH-HHCCCcEEEEECCCCchhhHHHHhhcCCCEEEEecCCC----HHHHHHHHc--CCCEEE
Confidence            47999999999999998888 446899999998774 44333   33455332 23333    234444443  699999


Q ss_pred             ECCCCc---cHHHHHHHh
Q psy1959         238 EAVGGE---DKTDLIRQK  252 (296)
Q Consensus       238 d~~g~~---~~~~~~~~l  252 (296)
                      .+.+..   .....++.+
T Consensus        85 ~~a~~~~~~~~~~l~~aa  102 (318)
T 2r6j_A           85 SALAFPQILDQFKILEAI  102 (318)
T ss_dssp             ECCCGGGSTTHHHHHHHH
T ss_pred             ECCchhhhHHHHHHHHHH
Confidence            999852   233444444

>1u7z_A Coenzyme A biosynthesis bifunctional protein coabc; ligase; HET: PMT; 2.30A {Escherichia coli} SCOP: c.72.3.1 PDB: 1u7w_A* 1u7u_A* 1u80_A*

Probab=95.25  E-value=0.053  Score=45.68  Aligned_cols=75  Identities=15%  Similarity=0.123  Sum_probs=50.4

Q ss_pred             CCcEEEEEcC----------------CCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCcEEEEcCCchhHHHHH
Q psy1959         161 EKQTVLVTAA----------------GGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNKV  224 (296)
Q Consensus       161 ~g~~vlI~Ga----------------~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i  224 (296)
                      .|++++|+|+                +|++|.+.++.+ ...|++|+++.++.. .+.  ..|. ...+.....+..+.+
T Consensus         7 ~gk~vlVTgG~T~E~iDpVR~itN~SSg~iG~aiA~~~-~~~Ga~V~l~~~~~~-l~~--~~g~-~~~dv~~~~~~~~~v   81 (226)
T 1u7z_A            7 KHLNIMITAGPTREPLDPVRYISDHSSGKMGFAIAAAA-ARRGANVTLVSGPVS-LPT--PPFV-KRVDVMTALEMEAAV   81 (226)
T ss_dssp             TTCEEEEEESBCEEESSSSEEEEECCCSHHHHHHHHHH-HHTTCEEEEEECSCC-CCC--CTTE-EEEECCSHHHHHHHH
T ss_pred             CCCEEEEECCCCCcccCceeeccCCCccHHHHHHHHHH-HHCCCEEEEEECCcc-ccc--CCCC-eEEccCcHHHHHHHH
Confidence            5889999999                689999999988 568999999876542 110  1122 234444324444444


Q ss_pred             HHHhCCCcccEEEECCCC
Q psy1959         225 LEVSGGKYANVVFEAVGG  242 (296)
Q Consensus       225 ~~~~~~~g~d~vld~~g~  242 (296)
                      .+..  ..+|+++.+.|-
T Consensus        82 ~~~~--~~~Dili~~Aav   97 (226)
T 1u7z_A           82 NASV--QQQNIFIGCAAV   97 (226)
T ss_dssp             HHHG--GGCSEEEECCBC
T ss_pred             HHhc--CCCCEEEECCcc
Confidence            4444  268999999885

>2yy7_A L-threonine dehydrogenase; thermolabIle, flavobacterium FRIG KUC-1, oxidoreductase; HET: PE8 NAD MES; 2.06A {Flavobacterium frigidimaris}

Probab=95.21  E-value=0.026  Score=49.13  Aligned_cols=74  Identities=14%  Similarity=0.099  Sum_probs=47.6

Q ss_pred             cEEEEEcCCCcHHHHHHHHHHHh-CCCEEEEEeCCcchHHHHHhcCCcEE-EEcCCchhHHHHHHHHhCCCcccEEEECC
Q psy1959         163 QTVLVTAAGGGLGLAAVDMATKI-YKAKVIGVCNSEDKTDLIRQKGAWAA-LTFTNEKSLVNKVLEVSGGKYANVVFEAV  240 (296)
Q Consensus       163 ~~vlI~Ga~g~vG~aa~~la~~~-~g~~Vi~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~i~~~~~~~g~d~vld~~  240 (296)
                      .+|+|+|++|.+|...++.+.+. .|.+|++++++..+.....  +...+ .+..+...+.+.+.+    .++|++|.+.
T Consensus         3 ~~vlVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~~~~--~~~~~~~D~~d~~~~~~~~~~----~~~d~vih~a   76 (312)
T 2yy7_A            3 PKILIIGACGQIGTELTQKLRKLYGTENVIASDIRKLNTDVVN--SGPFEVVNALDFNQIEHLVEV----HKITDIYLMA   76 (312)
T ss_dssp             CCEEEETTTSHHHHHHHHHHHHHHCGGGEEEEESCCCSCHHHH--SSCEEECCTTCHHHHHHHHHH----TTCCEEEECC
T ss_pred             ceEEEECCccHHHHHHHHHHHHhCCCCEEEEEcCCCccccccC--CCceEEecCCCHHHHHHHHhh----cCCCEEEECC
Confidence            57999999999999988877342 2789999998766643322  22222 233332223333322    2799999999


Q ss_pred             CC
Q psy1959         241 GG  242 (296)
Q Consensus       241 g~  242 (296)
                      +.
T Consensus        77 ~~   78 (312)
T 2yy7_A           77 AL   78 (312)
T ss_dssp             CC
T ss_pred             cc
Confidence            85

>1n7h_A GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR, short-chain dehydrogenase/reductase, LYA; HET: NDP GDP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1n7g_A*

Probab=95.17  E-value=0.033  Score=50.09  Aligned_cols=36  Identities=17%  Similarity=0.135  Sum_probs=30.8

Q ss_pred             cEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcch
Q psy1959         163 QTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDK  199 (296)
Q Consensus       163 ~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~  199 (296)
                      .+|||+|++|.+|..+++.+ ...|.+|++++++.++
T Consensus        29 k~vlVtGatG~IG~~l~~~L-~~~g~~V~~~~r~~~~   64 (381)
T 1n7h_A           29 KIALITGITGQDGSYLTEFL-LGKGYEVHGLIRRSSN   64 (381)
T ss_dssp             CEEEEETTTSHHHHHHHHHH-HHTTCEEEEEECCCSS
T ss_pred             CeEEEEcCCchHHHHHHHHH-HHCCCEEEEEecCCcc
Confidence            58999999999999988887 4479999999987654

>2q1s_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NADH complex, sugar binding protein; HET: NAI; 1.50A {Bordetella bronchiseptica} PDB: 2pzj_A* 2q1t_A* 2q1u_A*

Probab=95.12  E-value=0.042  Score=49.49  Aligned_cols=77  Identities=14%  Similarity=0.033  Sum_probs=48.8

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCC-CEEEEEeCCcchHH-HHHhcCCcEEEEcCCchhHHHHHHHHhCCCcccEEEE
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYK-AKVIGVCNSEDKTD-LIRQKGAWAALTFTNEKSLVNKVLEVSGGKYANVVFE  238 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g-~~Vi~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~g~d~vld  238 (296)
                      .+.+|+|+|++|.+|..+++.+ ...| .+|++++++.++.. .+.. .....+..-+..+ .+.+.++.  +++|+||.
T Consensus        31 ~~~~ilVtGatG~iG~~l~~~L-~~~g~~~V~~~~r~~~~~~~~l~~-~~~v~~~~~Dl~d-~~~l~~~~--~~~d~Vih  105 (377)
T 2q1s_A           31 ANTNVMVVGGAGFVGSNLVKRL-LELGVNQVHVVDNLLSAEKINVPD-HPAVRFSETSITD-DALLASLQ--DEYDYVFH  105 (377)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHH-HHTTCSEEEEECCCTTCCGGGSCC-CTTEEEECSCTTC-HHHHHHCC--SCCSEEEE
T ss_pred             CCCEEEEECCccHHHHHHHHHH-HHcCCceEEEEECCCCCchhhccC-CCceEEEECCCCC-HHHHHHHh--hCCCEEEE
Confidence            4578999999999999988888 4468 99999998755421 1110 1112121112111 23444444  38999999


Q ss_pred             CCCC
Q psy1959         239 AVGG  242 (296)
Q Consensus       239 ~~g~  242 (296)
                      +.+.
T Consensus       106 ~A~~  109 (377)
T 2q1s_A          106 LATY  109 (377)
T ss_dssp             CCCC
T ss_pred             CCCc
Confidence            9985

>3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A*

Probab=95.08  E-value=0.16  Score=44.97  Aligned_cols=73  Identities=10%  Similarity=0.061  Sum_probs=47.9

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCC-EEEEEeCC---cchHHHHH-hc----CCc-EEEEcCCchhHHHHHHHHhCC
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKA-KVIGVCNS---EDKTDLIR-QK----GAW-AALTFTNEKSLVNKVLEVSGG  230 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~-~Vi~~~~~---~~~~~~~~-~~----g~~-~~~~~~~~~~~~~~i~~~~~~  230 (296)
                      .+++++|+|+ |++|.+++..+ ...|+ +|+++.|+   .++.+.+. ++    +.. ....+.+..    .+.+..  
T Consensus       153 ~gk~~lVlGa-GG~g~aia~~L-~~~Ga~~V~i~nR~~~~~~~a~~la~~~~~~~~~~~~~~~~~~~~----~l~~~l--  224 (315)
T 3tnl_A          153 IGKKMTICGA-GGAATAICIQA-ALDGVKEISIFNRKDDFYANAEKTVEKINSKTDCKAQLFDIEDHE----QLRKEI--  224 (315)
T ss_dssp             TTSEEEEECC-SHHHHHHHHHH-HHTTCSEEEEEECSSTTHHHHHHHHHHHHHHSSCEEEEEETTCHH----HHHHHH--
T ss_pred             cCCEEEEECC-ChHHHHHHHHH-HHCCCCEEEEEECCCchHHHHHHHHHHhhhhcCCceEEeccchHH----HHHhhh--
Confidence            6899999997 99999988877 45798 89999998   56655443 22    221 233343311    222222  


Q ss_pred             CcccEEEECCC
Q psy1959         231 KYANVVFEAVG  241 (296)
Q Consensus       231 ~g~d~vld~~g  241 (296)
                      ..+|++++|+.
T Consensus       225 ~~aDiIINaTp  235 (315)
T 3tnl_A          225 AESVIFTNATG  235 (315)
T ss_dssp             HTCSEEEECSS
T ss_pred             cCCCEEEECcc
Confidence            25899999876

>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans}

Probab=95.05  E-value=0.014  Score=48.97  Aligned_cols=100  Identities=14%  Similarity=0.149  Sum_probs=64.0

Q ss_pred             cCCCCCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhc----CCc--EEEEcCCchhHHHHHHHHhCC
Q psy1959         157 AKLKEKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQK----GAW--AALTFTNEKSLVNKVLEVSGG  230 (296)
Q Consensus       157 ~~~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~----g~~--~~~~~~~~~~~~~~i~~~~~~  230 (296)
                      ....++++||-.|+ | .|..+..+++...+.+|+.++.+++..+.+++.    |..  ..+...+   ..+.+......
T Consensus        50 ~~~~~~~~vLdiG~-G-~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d---~~~~~~~~~~~  124 (233)
T 2gpy_A           50 LKMAAPARILEIGT-A-IGYSAIRMAQALPEATIVSIERDERRYEEAHKHVKALGLESRIELLFGD---ALQLGEKLELY  124 (233)
T ss_dssp             HHHHCCSEEEEECC-T-TSHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSC---GGGSHHHHTTS
T ss_pred             HhccCCCEEEEecC-C-CcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECC---HHHHHHhcccC
Confidence            34457889999996 4 688888888443368999999999988777653    442  2222222   11112222223


Q ss_pred             CcccEEEECCCC----ccHHHHHHHhhccCceEEee
Q psy1959         231 KYANVVFEAVGG----EDKTDLIRQKGAWAALTFTN  262 (296)
Q Consensus       231 ~g~d~vld~~g~----~~~~~~~~~lg~~~g~~~~~  262 (296)
                      ..+|+|+.....    ..+..+.+.| +++|.+.+.
T Consensus       125 ~~fD~I~~~~~~~~~~~~l~~~~~~L-~pgG~lv~~  159 (233)
T 2gpy_A          125 PLFDVLFIDAAKGQYRRFFDMYSPMV-RPGGLILSD  159 (233)
T ss_dssp             CCEEEEEEEGGGSCHHHHHHHHGGGE-EEEEEEEEE
T ss_pred             CCccEEEECCCHHHHHHHHHHHHHHc-CCCeEEEEE
Confidence            479999876653    2456666777 888888665

>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}

Probab=95.02  E-value=0.088  Score=45.11  Aligned_cols=68  Identities=15%  Similarity=0.096  Sum_probs=51.1

Q ss_pred             cEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCcEEEEcCCchhHHHHHHHHhCCCcccEEEECCCC
Q psy1959         163 QTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNKVLEVSGGKYANVVFEAVGG  242 (296)
Q Consensus       163 ~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~g~d~vld~~g~  242 (296)
                      .+|+|+|+ |.+|..+++.+ ...|.+|+++++++++.+.+...+...+ ..+- .++.        -.++|+||.+.+.
T Consensus         6 ~~ilVtGa-G~iG~~l~~~L-~~~g~~V~~~~r~~~~~~~~~~~~~~~~-~~D~-~d~~--------~~~~d~vi~~a~~   73 (286)
T 3ius_A            6 GTLLSFGH-GYTARVLSRAL-APQGWRIIGTSRNPDQMEAIRASGAEPL-LWPG-EEPS--------LDGVTHLLISTAP   73 (286)
T ss_dssp             CEEEEETC-CHHHHHHHHHH-GGGTCEEEEEESCGGGHHHHHHTTEEEE-ESSS-SCCC--------CTTCCEEEECCCC
T ss_pred             CcEEEECC-cHHHHHHHHHH-HHCCCEEEEEEcChhhhhhHhhCCCeEE-Eecc-cccc--------cCCCCEEEECCCc
Confidence            57999998 99999999888 5579999999999998888777665332 2221 2211        2479999999975

>1gy8_A UDP-galactose 4-epimerase; oxidoreductase; HET: NAD UDP; 2.0A {Trypanosoma brucei} SCOP: c.2.1.2 PDB: 2cnb_A*

Probab=94.97  E-value=0.12  Score=46.61  Aligned_cols=38  Identities=21%  Similarity=0.128  Sum_probs=30.9

Q ss_pred             CcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcch
Q psy1959         162 KQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDK  199 (296)
Q Consensus       162 g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~  199 (296)
                      +.+|||+|++|.+|..+++.+.+..|.+|++++++.++
T Consensus         2 ~m~vlVTGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~   39 (397)
T 1gy8_A            2 HMRVLVCGGAGYIGSHFVRALLRDTNHSVVIVDSLVGT   39 (397)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHCCCEEEEEECCTTT
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHhCCCEEEEEecCCcc
Confidence            34799999999999999888831579999999986543

>1udb_A Epimerase, UDP-galactose-4-epimerase; isomerase; HET: NAD UFG; 1.65A {Escherichia coli} SCOP: c.2.1.2 PDB: 1lrj_A* 1nai_A* 1uda_A* 1nah_A* 1xel_A* 1kvq_A* 1kvs_A* 1udc_A* 2udp_A* 1a9z_A* 1kvt_A* 1kvr_A* 1lrk_A* 1lrl_A* 1kvu_A* 1a9y_A*

Probab=94.96  E-value=0.075  Score=46.78  Aligned_cols=74  Identities=20%  Similarity=0.159  Sum_probs=45.4

Q ss_pred             EEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCc----chHHHHHhc-CCc-EEE--EcCCchhHHHHHHHHhCCCcccE
Q psy1959         164 TVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSE----DKTDLIRQK-GAW-AAL--TFTNEKSLVNKVLEVSGGKYANV  235 (296)
Q Consensus       164 ~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~----~~~~~~~~~-g~~-~~~--~~~~~~~~~~~i~~~~~~~g~d~  235 (296)
                      +|+|+|++|.+|..+++.+ ...|.+|+++++..    +..+.+.+. +.. ..+  +..+...+.+.+.+    .++|+
T Consensus         2 ~vlVTGatG~iG~~l~~~L-~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~----~~~D~   76 (338)
T 1udb_A            2 RVLVTGGSGYIGSHTCVQL-LQNGHDVIILDNLCNSKRSVLPVIERLGGKHPTFVEGDIRNEALMTEILHD----HAIDT   76 (338)
T ss_dssp             EEEEETTTSHHHHHHHHHH-HHTTCEEEEEECCSSCCTTHHHHHHHHHTSCCEEEECCTTCHHHHHHHHHH----TTCSE
T ss_pred             EEEEECCCCHHHHHHHHHH-HHCCCEEEEEecCCCcchhHHHHHHhhcCCcceEEEccCCCHHHHHHHhhc----cCCCE
Confidence            6899999999999988877 44799999987532    223333332 211 222  33331222222322    26999


Q ss_pred             EEECCCC
Q psy1959         236 VFEAVGG  242 (296)
Q Consensus       236 vld~~g~  242 (296)
                      +|.+.|.
T Consensus        77 vih~A~~   83 (338)
T 1udb_A           77 VIHFAGL   83 (338)
T ss_dssp             EEECCSC
T ss_pred             EEECCcc
Confidence            9999984

>2c20_A UDP-glucose 4-epimerase; carbohydrate metabolism, galactose metabolism, isomerase, NAD, spine; HET: NAD; 2.7A {Bacillus anthracis}

Probab=94.92  E-value=0.046  Score=47.92  Aligned_cols=73  Identities=16%  Similarity=0.124  Sum_probs=46.4

Q ss_pred             cEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhc--CCcEE-EEcCCchhHHHHHHHHhCCCcccEEEEC
Q psy1959         163 QTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQK--GAWAA-LTFTNEKSLVNKVLEVSGGKYANVVFEA  239 (296)
Q Consensus       163 ~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~--g~~~~-~~~~~~~~~~~~i~~~~~~~g~d~vld~  239 (296)
                      .+|+|+|++|.+|..+++.+ ...|.+|+++++...+..  ..+  +...+ .+..+...+.+.+.+    .++|+||.+
T Consensus         2 ~~ilVtGatG~iG~~l~~~L-~~~g~~V~~~~r~~~~~~--~~~~~~~~~~~~D~~~~~~~~~~~~~----~~~d~vih~   74 (330)
T 2c20_A            2 NSILICGGAGYIGSHAVKKL-VDEGLSVVVVDNLQTGHE--DAITEGAKFYNGDLRDKAFLRDVFTQ----ENIEAVMHF   74 (330)
T ss_dssp             CEEEEETTTSHHHHHHHHHH-HHTTCEEEEEECCSSCCG--GGSCTTSEEEECCTTCHHHHHHHHHH----SCEEEEEEC
T ss_pred             CEEEEECCCcHHHHHHHHHH-HhCCCEEEEEeCCCcCch--hhcCCCcEEEECCCCCHHHHHHHHhh----cCCCEEEEC
Confidence            47999999999999988887 447999999987654322  112  22221 223331223232322    379999999


Q ss_pred             CCC
Q psy1959         240 VGG  242 (296)
Q Consensus       240 ~g~  242 (296)
                      .+.
T Consensus        75 a~~   77 (330)
T 2c20_A           75 AAD   77 (330)
T ss_dssp             CCC
T ss_pred             Ccc
Confidence            985

>2c29_D Dihydroflavonol 4-reductase; flavonoids, short dehydrogenase reductase, NADPH, dihydroquercetin, rossmann fold, oxidoreductase; HET: NAP DQH; 1.81A {Vitis vinifera} PDB: 2iod_A* 2nnl_D* 3bxx_A* 3c1t_A*

Probab=94.90  E-value=0.06  Score=47.47  Aligned_cols=39  Identities=23%  Similarity=0.099  Sum_probs=31.2

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchH
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKT  200 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~  200 (296)
                      .+++|||+|++|.+|..+++.+ ...|.+|++++++.++.
T Consensus         4 ~~~~vlVTGatGfIG~~l~~~L-~~~G~~V~~~~r~~~~~   42 (337)
T 2c29_D            4 QSETVCVTGASGFIGSWLVMRL-LERGYTVRATVRDPTNV   42 (337)
T ss_dssp             --CEEEETTTTSHHHHHHHHHH-HHTTCEEEEEESCTTCH
T ss_pred             CCCEEEEECCchHHHHHHHHHH-HHCCCEEEEEECCcchh
Confidence            4678999999999999988877 44799999988876643

>4ina_A Saccharopine dehydrogenase; structural genomics, PSI-biology, northeast structural genom consortium, NESG, oxidoreductas; 2.49A {Wolinella succinogenes}

Probab=94.89  E-value=0.15  Score=46.70  Aligned_cols=84  Identities=19%  Similarity=0.130  Sum_probs=53.4

Q ss_pred             cEEEEEcCCCcHHHHHHHHHHHhCC---CEEEEEeCCcchHHHHHh-cC------CcE-EEEcCCchhHHHHHHHHhCCC
Q psy1959         163 QTVLVTAAGGGLGLAAVDMATKIYK---AKVIGVCNSEDKTDLIRQ-KG------AWA-ALTFTNEKSLVNKVLEVSGGK  231 (296)
Q Consensus       163 ~~vlI~Ga~g~vG~aa~~la~~~~g---~~Vi~~~~~~~~~~~~~~-~g------~~~-~~~~~~~~~~~~~i~~~~~~~  231 (296)
                      .+|+|+|+ |++|..+++.+.+ .+   .+|++++++.++.+.+.+ ++      ... ..+..+..++.+.+.+.    
T Consensus         2 ~kVlIiGa-GgiG~~ia~~L~~-~g~~~~~V~v~~r~~~~~~~la~~l~~~~~~~~~~~~~D~~d~~~l~~~l~~~----   75 (405)
T 4ina_A            2 AKVLQIGA-GGVGGVVAHKMAM-NREVFSHITLASRTLSKCQEIAQSIKAKGYGEIDITTVDADSIEELVALINEV----   75 (405)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHT-CTTTCCEEEEEESCHHHHHHHHHHHHHTTCCCCEEEECCTTCHHHHHHHHHHH----
T ss_pred             CEEEEECC-CHHHHHHHHHHHh-CCCCceEEEEEECCHHHHHHHHHHhhhhcCCceEEEEecCCCHHHHHHHHHhh----
Confidence            37899998 9999998887734 55   499999999988776543 21      211 12333323333333332    


Q ss_pred             cccEEEECCCC-ccHHHHHHHh
Q psy1959         232 YANVVFEAVGG-EDKTDLIRQK  252 (296)
Q Consensus       232 g~d~vld~~g~-~~~~~~~~~l  252 (296)
                      ++|+|+++.+. .....+..++
T Consensus        76 ~~DvVin~ag~~~~~~v~~a~l   97 (405)
T 4ina_A           76 KPQIVLNIALPYQDLTIMEACL   97 (405)
T ss_dssp             CCSEEEECSCGGGHHHHHHHHH
T ss_pred             CCCEEEECCCcccChHHHHHHH
Confidence            58999999986 3444444555

>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus}

Probab=94.87  E-value=0.12  Score=43.42  Aligned_cols=98  Identities=9%  Similarity=-0.076  Sum_probs=67.1

Q ss_pred             HHcCCCCCcEEEEEcCCCcHHHHHHHHHHHhC-CCEEEEEeCCcchHHHHHhc-----CCcEE-EEcCCchhHHHHHHHH
Q psy1959         155 RHAKLKEKQTVLVTAAGGGLGLAAVDMATKIY-KAKVIGVCNSEDKTDLIRQK-----GAWAA-LTFTNEKSLVNKVLEV  227 (296)
Q Consensus       155 ~~~~~~~g~~vlI~Ga~g~vG~aa~~la~~~~-g~~Vi~~~~~~~~~~~~~~~-----g~~~~-~~~~~~~~~~~~i~~~  227 (296)
                      ....++++++||-.|+ |. |..+..+++... +.+|+.++.+++..+.+++.     |...+ +...+..+.      .
T Consensus        90 ~~~~~~~~~~vLdiG~-G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~g~~~v~~~~~d~~~~------~  161 (258)
T 2pwy_A           90 TLLDLAPGMRVLEAGT-GS-GGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAFWQVENVRFHLGKLEEA------E  161 (258)
T ss_dssp             HHTTCCTTCEEEEECC-TT-SHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCCCCEEEEESCGGGC------C
T ss_pred             HHcCCCCCCEEEEECC-Cc-CHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCEEEEECchhhc------C
Confidence            5667889999999996 54 888888884323 67999999999988877654     53222 222221111      0


Q ss_pred             hCCCcccEEEECCCC--ccHHHHHHHhhccCceEEe
Q psy1959         228 SGGKYANVVFEAVGG--EDKTDLIRQKGAWAALTFT  261 (296)
Q Consensus       228 ~~~~g~d~vld~~g~--~~~~~~~~~lg~~~g~~~~  261 (296)
                      .....+|+++.....  ..+..+.+.| +++|.+.+
T Consensus       162 ~~~~~~D~v~~~~~~~~~~l~~~~~~L-~~gG~l~~  196 (258)
T 2pwy_A          162 LEEAAYDGVALDLMEPWKVLEKAALAL-KPDRFLVA  196 (258)
T ss_dssp             CCTTCEEEEEEESSCGGGGHHHHHHHE-EEEEEEEE
T ss_pred             CCCCCcCEEEECCcCHHHHHHHHHHhC-CCCCEEEE
Confidence            123469999987665  4688888899 88887754

>1i24_A Sulfolipid biosynthesis protein SQD1; SDR, short-chain dehydrogenase/reductase, rossmann fold, BIO protein; HET: NAD UPG; 1.20A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1i2c_A* 1i2b_A* 1qrr_A*

Probab=94.84  E-value=0.064  Score=48.43  Aligned_cols=39  Identities=21%  Similarity=0.044  Sum_probs=29.9

Q ss_pred             CCCCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcc
Q psy1959         159 LKEKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSED  198 (296)
Q Consensus       159 ~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~  198 (296)
                      .+.+.+|||+|++|-+|..++..+ ...|.+|+++++..+
T Consensus         8 ~~~~~~vlVTG~tGfIG~~l~~~L-~~~G~~V~~~~r~~~   46 (404)
T 1i24_A            8 HHHGSRVMVIGGDGYCGWATALHL-SKKNYEVCIVDNLVR   46 (404)
T ss_dssp             ----CEEEEETTTSHHHHHHHHHH-HHTTCEEEEEECCHH
T ss_pred             ccCCCeEEEeCCCcHHHHHHHHHH-HhCCCeEEEEEecCc
Confidence            457899999999999999988877 446999999987543

>1kew_A RMLB;, DTDP-D-glucose 4,6-dehydratase; rossmann fold, lyase; HET: TYD NAD; 1.80A {Salmonella enterica subsp} SCOP: c.2.1.2 PDB: 1g1a_A* 1keu_A* 1bxk_A*

Probab=94.83  E-value=0.049  Score=48.44  Aligned_cols=75  Identities=12%  Similarity=0.141  Sum_probs=45.6

Q ss_pred             EEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCc--chHHHHHhc--CCc-EEE--EcCCchhHHHHHHHHhCCCcccEE
Q psy1959         164 TVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSE--DKTDLIRQK--GAW-AAL--TFTNEKSLVNKVLEVSGGKYANVV  236 (296)
Q Consensus       164 ~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~--~~~~~~~~~--g~~-~~~--~~~~~~~~~~~i~~~~~~~g~d~v  236 (296)
                      +|||+|++|.+|..+++.+.+..|.+|+++++..  ++.+.+.++  +.. ..+  +..+...+.+.+.+    .++|++
T Consensus         2 kvlVTGasG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~----~~~d~v   77 (361)
T 1kew_A            2 KILITGGAGFIGSAVVRHIIKNTQDTVVNIDKLTYAGNLESLSDISESNRYNFEHADICDSAEITRIFEQ----YQPDAV   77 (361)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHHCSCEEEEEECCCTTCCGGGGTTTTTCTTEEEEECCTTCHHHHHHHHHH----HCCSEE
T ss_pred             EEEEECCCchHhHHHHHHHHhcCCCeEEEEecCCCCCchhhhhhhhcCCCeEEEECCCCCHHHHHHHHhh----cCCCEE
Confidence            5899999999999988777443378999998754  223333222  111 222  22331223233322    279999


Q ss_pred             EECCCC
Q psy1959         237 FEAVGG  242 (296)
Q Consensus       237 ld~~g~  242 (296)
                      |.+.+.
T Consensus        78 ih~A~~   83 (361)
T 1kew_A           78 MHLAAE   83 (361)
T ss_dssp             EECCSC
T ss_pred             EECCCC
Confidence            999885

>2o2s_A Enoyl-acyl carrier reductase; enoyl reductase, triclosan, rossmann fold, oxidoreductase; HET: NAD TCL; 2.60A {Toxoplasma gondii} PDB: 2o50_A 3nj8_A*

Probab=94.82  E-value=0.11  Score=45.53  Aligned_cols=35  Identities=23%  Similarity=0.128  Sum_probs=29.5

Q ss_pred             CCcEEEEEcC--CCcHHHHHHHHHHHhCCCEEEEEeCC
Q psy1959         161 EKQTVLVTAA--GGGLGLAAVDMATKIYKAKVIGVCNS  196 (296)
Q Consensus       161 ~g~~vlI~Ga--~g~vG~aa~~la~~~~g~~Vi~~~~~  196 (296)
                      .|++++|+|+  ++++|.++++.+ ...|++|++++++
T Consensus         8 ~gk~~lVTGa~~s~GIG~aia~~l-a~~G~~Vv~~~r~   44 (315)
T 2o2s_A            8 RGQTAFVAGVADSHGYGWAIAKHL-ASAGARVALGTWP   44 (315)
T ss_dssp             TTCEEEEECCSSSSSHHHHHHHHH-HTTTCEEEEEECH
T ss_pred             CCCEEEEeCCCCCCChHHHHHHHH-HHCCCEEEEEecc
Confidence            5789999998  899999988777 4579999998754

>2ph5_A Homospermidine synthase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: NAD; 2.50A {Legionella pneumophila subsp}

Probab=94.80  E-value=0.1  Score=48.72  Aligned_cols=97  Identities=16%  Similarity=0.171  Sum_probs=61.7

Q ss_pred             CCCCCcEEEEEcCCCcHHHHHHHHHHHhCCC---EEEEEeCCcchHHHHHhcCCcEEE-EcCCchhHHHHHHHHhCCCcc
Q psy1959         158 KLKEKQTVLVTAAGGGLGLAAVDMATKIYKA---KVIGVCNSEDKTDLIRQKGAWAAL-TFTNEKSLVNKVLEVSGGKYA  233 (296)
Q Consensus       158 ~~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~---~Vi~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~i~~~~~~~g~  233 (296)
                      ++....+|+|+|+ |++|+.++.++.+..+.   +|++++..+.+.+..+..|..... ..+. .+..+.+..+... + 
T Consensus         9 ~~~~~~rVlIIGa-GgVG~~va~lla~~~dv~~~~I~vaD~~~~~~~~~~~~g~~~~~~~Vda-dnv~~~l~aLl~~-~-   84 (480)
T 2ph5_A            9 KILFKNRFVILGF-GCVGQALMPLIFEKFDIKPSQVTIIAAEGTKVDVAQQYGVSFKLQQITP-QNYLEVIGSTLEE-N-   84 (480)
T ss_dssp             CBCCCSCEEEECC-SHHHHHHHHHHHHHBCCCGGGEEEEESSCCSCCHHHHHTCEEEECCCCT-TTHHHHTGGGCCT-T-
T ss_pred             eecCCCCEEEECc-CHHHHHHHHHHHhCCCCceeEEEEeccchhhhhHHhhcCCceeEEeccc-hhHHHHHHHHhcC-C-
Confidence            4456678999997 99999999888555555   688888777666656556753321 1222 4444555555543 4 


Q ss_pred             cEEEECCCC-ccHHHHHHHhhccCceE
Q psy1959         234 NVVFEAVGG-EDKTDLIRQKGAWAALT  259 (296)
Q Consensus       234 d~vld~~g~-~~~~~~~~~lg~~~g~~  259 (296)
                      |+|++++-. ..+..+-.|+ ..+-.+
T Consensus        85 DvVIN~s~~~~~l~Im~acl-eaGv~Y  110 (480)
T 2ph5_A           85 DFLIDVSIGISSLALIILCN-QKGALY  110 (480)
T ss_dssp             CEEEECCSSSCHHHHHHHHH-HHTCEE
T ss_pred             CEEEECCccccCHHHHHHHH-HcCCCE
Confidence            999997755 4444455555 444443

>1t2a_A GDP-mannose 4,6 dehydratase; structural genomics consortium, rossman-fold, short-chain dehydrogenase/reductase, SDR, structural genomics,lyase; HET: NDP GDP; 1.84A {Homo sapiens} SCOP: c.2.1.2

Probab=94.79  E-value=0.037  Score=49.65  Aligned_cols=35  Identities=17%  Similarity=0.170  Sum_probs=30.1

Q ss_pred             cEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcc
Q psy1959         163 QTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSED  198 (296)
Q Consensus       163 ~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~  198 (296)
                      .+|+|+|++|.+|..+++.+ ...|.+|++++++.+
T Consensus        25 ~~vlVtGatG~iG~~l~~~L-~~~g~~V~~~~r~~~   59 (375)
T 1t2a_A           25 NVALITGITGQDGSYLAEFL-LEKGYEVHGIVRRSS   59 (375)
T ss_dssp             CEEEEETTTSHHHHHHHHHH-HHTTCEEEEEECCCS
T ss_pred             cEEEEECCCchHHHHHHHHH-HHCCCEEEEEECCcc
Confidence            57999999999999988887 447999999998754

>2gk4_A Conserved hypothetical protein; alpha-beta-alpha sandwich, flavoprotein, structural genomics protein structure initiative; 1.83A {Streptococcus pneumoniae}

Probab=94.79  E-value=0.075  Score=44.89  Aligned_cols=77  Identities=17%  Similarity=0.132  Sum_probs=51.6

Q ss_pred             CCcEEEEEcC----------------CCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCcEEEEcCCchhHHHHH
Q psy1959         161 EKQTVLVTAA----------------GGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNKV  224 (296)
Q Consensus       161 ~g~~vlI~Ga----------------~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i  224 (296)
                      .|.+|+|+|+                +|.+|.+.++.+ ...|++|+.+.++...... ...+. .++......+..+.+
T Consensus         2 ~gk~vlVTgG~T~E~IDpVR~ItN~SSG~mG~aiA~~~-~~~Ga~V~lv~~~~~~~~~-~~~~~-~~~~v~s~~em~~~v   78 (232)
T 2gk4_A            2 NAMKILVTSGGTSEAIDSVRSITNHSTGHLGKIITETL-LSAGYEVCLITTKRALKPE-PHPNL-SIREITNTKDLLIEM   78 (232)
T ss_dssp             -CCEEEEECSBCEEESSSSEEEEECCCCHHHHHHHHHH-HHTTCEEEEEECTTSCCCC-CCTTE-EEEECCSHHHHHHHH
T ss_pred             CCCEEEEeCCCcccccCceeeccCCCCCHHHHHHHHHH-HHCCCEEEEEeCCcccccc-CCCCe-EEEEHhHHHHHHHHH
Confidence            5889999999                788999999999 5689999999986542110 00122 334443334455555


Q ss_pred             HHHhCCCcccEEEECCCC
Q psy1959         225 LEVSGGKYANVVFEAVGG  242 (296)
Q Consensus       225 ~~~~~~~g~d~vld~~g~  242 (296)
                      .+..  .++|+++.+.+-
T Consensus        79 ~~~~--~~~Dili~aAAv   94 (232)
T 2gk4_A           79 QERV--QDYQVLIHSMAV   94 (232)
T ss_dssp             HHHG--GGCSEEEECSBC
T ss_pred             HHhc--CCCCEEEEcCcc
Confidence            5554  369999998884

>2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens}

Probab=94.79  E-value=0.3  Score=39.10  Aligned_cols=98  Identities=17%  Similarity=0.046  Sum_probs=60.9

Q ss_pred             HcCCCCCcEEEEEcCCCcHHHHHHHHHHHhCC----------CEEEEEeCCcchHHHHHhcCCcEEE-EcCC-chhHHHH
Q psy1959         156 HAKLKEKQTVLVTAAGGGLGLAAVDMATKIYK----------AKVIGVCNSEDKTDLIRQKGAWAAL-TFTN-EKSLVNK  223 (296)
Q Consensus       156 ~~~~~~g~~vlI~Ga~g~vG~aa~~la~~~~g----------~~Vi~~~~~~~~~~~~~~~g~~~~~-~~~~-~~~~~~~  223 (296)
                      ..-++++++||-.|+ |. |..+..+++ ..+          .+|++++.++...     ......+ ..+- .....+.
T Consensus        17 ~~~~~~~~~vLDlGc-G~-G~~~~~la~-~~~~~~~~~~~~~~~v~~vD~s~~~~-----~~~~~~~~~~d~~~~~~~~~   88 (196)
T 2nyu_A           17 HQILRPGLRVLDCGA-AP-GAWSQVAVQ-KVNAAGTDPSSPVGFVLGVDLLHIFP-----LEGATFLCPADVTDPRTSQR   88 (196)
T ss_dssp             HCCCCTTCEEEEETC-CS-CHHHHHHHH-HTTTTCCCTTSCCCEEEEECSSCCCC-----CTTCEEECSCCTTSHHHHHH
T ss_pred             cCCCCCCCEEEEeCC-CC-CHHHHHHHH-HhccccccccCCCceEEEEechhccc-----CCCCeEEEeccCCCHHHHHH
Confidence            344688999999997 66 888889994 444          7999999887531     1111222 1111 1233344


Q ss_pred             HHHHhCCCcccEEEEC-----CCC-------------ccHHHHHHHhhccCceEEee
Q psy1959         224 VLEVSGGKYANVVFEA-----VGG-------------EDKTDLIRQKGAWAALTFTN  262 (296)
Q Consensus       224 i~~~~~~~g~d~vld~-----~g~-------------~~~~~~~~~lg~~~g~~~~~  262 (296)
                      +.+...+..+|+|+..     .+.             ..+..+.+.| +++|.+.+.
T Consensus        89 ~~~~~~~~~fD~V~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L-kpgG~lv~~  144 (196)
T 2nyu_A           89 ILEVLPGRRADVILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDIL-QPGGTFLCK  144 (196)
T ss_dssp             HHHHSGGGCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHE-EEEEEEEEE
T ss_pred             HHHhcCCCCCcEEEeCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHh-cCCCEEEEE
Confidence            4444444579999953     332             2355677778 888888654

>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*

Probab=94.76  E-value=0.11  Score=47.82  Aligned_cols=77  Identities=14%  Similarity=0.185  Sum_probs=57.6

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCcEEEEcCCchhHHHHHHHHhCCCcccEEEECC
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNKVLEVSGGKYANVVFEAV  240 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~g~d~vld~~  240 (296)
                      .+.+|+|.|. |-+|+.+++.+ ...|.+|++++.++++.+.+++.|...++ .+.  .-.+.+.+ .+-..+|+++-++
T Consensus         3 ~~~~viIiG~-Gr~G~~va~~L-~~~g~~vvvId~d~~~v~~~~~~g~~vi~-GDa--t~~~~L~~-agi~~A~~viv~~   76 (413)
T 3l9w_A            3 HGMRVIIAGF-GRFGQITGRLL-LSSGVKMVVLDHDPDHIETLRKFGMKVFY-GDA--TRMDLLES-AGAAKAEVLINAI   76 (413)
T ss_dssp             -CCSEEEECC-SHHHHHHHHHH-HHTTCCEEEEECCHHHHHHHHHTTCCCEE-SCT--TCHHHHHH-TTTTTCSEEEECC
T ss_pred             CCCeEEEECC-CHHHHHHHHHH-HHCCCCEEEEECCHHHHHHHHhCCCeEEE-cCC--CCHHHHHh-cCCCccCEEEECC
Confidence            3467999997 99999999999 56899999999999999999988875432 221  11223333 3446899999999


Q ss_pred             CCc
Q psy1959         241 GGE  243 (296)
Q Consensus       241 g~~  243 (296)
                      ++.
T Consensus        77 ~~~   79 (413)
T 3l9w_A           77 DDP   79 (413)
T ss_dssp             SSH
T ss_pred             CCh
Confidence            984

>1orr_A CDP-tyvelose-2-epimerase; rossmann fold, short-chain dehydrogenase/reductase, isomeras; HET: NAD CDP; 1.50A {Salmonella typhi} SCOP: c.2.1.2

Probab=94.75  E-value=0.16  Score=44.62  Aligned_cols=75  Identities=16%  Similarity=0.209  Sum_probs=46.7

Q ss_pred             cEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcc--h---HHHHHhcCCcEEE--EcCCchhHHHHHHHHhCCCcccE
Q psy1959         163 QTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSED--K---TDLIRQKGAWAAL--TFTNEKSLVNKVLEVSGGKYANV  235 (296)
Q Consensus       163 ~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~--~---~~~~~~~g~~~~~--~~~~~~~~~~~i~~~~~~~g~d~  235 (296)
                      .+|||+|++|.+|..+++.+ ...|.+|+++++..+  .   .+.+.+.+....+  +..+...+.+.+.+    ..+|+
T Consensus         2 ~~vlVTGatG~iG~~l~~~L-~~~g~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~Dl~d~~~~~~~~~~----~~~d~   76 (347)
T 1orr_A            2 AKLLITGGCGFLGSNLASFA-LSQGIDLIVFDNLSRKGATDNLHWLSSLGNFEFVHGDIRNKNDVTRLITK----YMPDS   76 (347)
T ss_dssp             CEEEEETTTSHHHHHHHHHH-HHTTCEEEEEECCCSTTHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHH----HCCSE
T ss_pred             cEEEEeCCCchhHHHHHHHH-HhCCCEEEEEeCCCccCchhhhhhhccCCceEEEEcCCCCHHHHHHHHhc----cCCCE
Confidence            36999999999999988887 447999999987431  1   2233333322222  33332223333322    25899


Q ss_pred             EEECCCC
Q psy1959         236 VFEAVGG  242 (296)
Q Consensus       236 vld~~g~  242 (296)
                      ||.+.+.
T Consensus        77 vih~A~~   83 (347)
T 1orr_A           77 CFHLAGQ   83 (347)
T ss_dssp             EEECCCC
T ss_pred             EEECCcc
Confidence            9999985

>2v6g_A Progesterone 5-beta-reductase; tyrosine-dependent oxidoreductase, oxidoreductase, SDR, cardenolides, cardiac glycosides; HET: NAP; 2.3A {Digitalis lanata} PDB: 2v6f_A*

Probab=94.75  E-value=0.051  Score=48.31  Aligned_cols=75  Identities=12%  Similarity=0.067  Sum_probs=48.3

Q ss_pred             CcEEEEEcCCCcHHHHHHHHHHHhCC-----CEEEEEeCCcchHHHHHhcCCcEE-EEcCCchhHHHHHHHHhCCCc-cc
Q psy1959         162 KQTVLVTAAGGGLGLAAVDMATKIYK-----AKVIGVCNSEDKTDLIRQKGAWAA-LTFTNEKSLVNKVLEVSGGKY-AN  234 (296)
Q Consensus       162 g~~vlI~Ga~g~vG~aa~~la~~~~g-----~~Vi~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~i~~~~~~~g-~d  234 (296)
                      +.+|+|+|++|.+|...++.+ ...|     .+|++++++..+.. +...+...+ .+..+    .+.+.++..+.+ +|
T Consensus         1 ~~~vlVtGatG~iG~~l~~~L-~~~g~~~~~~~V~~~~r~~~~~~-~~~~~~~~~~~Dl~d----~~~~~~~~~~~~~~d   74 (364)
T 2v6g_A            1 SSVALIVGVTGIIGNSLAEIL-PLADTPGGPWKVYGVARRTRPAW-HEDNPINYVQCDISD----PDDSQAKLSPLTDVT   74 (364)
T ss_dssp             CEEEEEETTTSHHHHHHHHHT-TSTTCTTCSEEEEEEESSCCCSC-CCSSCCEEEECCTTS----HHHHHHHHTTCTTCC
T ss_pred             CCEEEEECCCcHHHHHHHHHH-HhCCCCCCceEEEEEeCCCCccc-cccCceEEEEeecCC----HHHHHHHHhcCCCCC
Confidence            468999999999999988887 4568     89999998766543 111122211 12222    223444443333 99


Q ss_pred             EEEECCCC
Q psy1959         235 VVFEAVGG  242 (296)
Q Consensus       235 ~vld~~g~  242 (296)
                      +||.+.+.
T Consensus        75 ~vih~a~~   82 (364)
T 2v6g_A           75 HVFYVTWA   82 (364)
T ss_dssp             EEEECCCC
T ss_pred             EEEECCCC
Confidence            99999874

>2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus}

Probab=94.69  E-value=0.18  Score=44.17  Aligned_cols=71  Identities=14%  Similarity=0.092  Sum_probs=50.3

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCC-EEEEEeCCcchHHHHH-hcCCc--EEEEcCCchhHHHHHHHHhCCCcccEE
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKA-KVIGVCNSEDKTDLIR-QKGAW--AALTFTNEKSLVNKVLEVSGGKYANVV  236 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~-~Vi~~~~~~~~~~~~~-~~g~~--~~~~~~~~~~~~~~i~~~~~~~g~d~v  236 (296)
                      ++++++|+|+ |++|.+++..+ ...|+ +|++.+++.++.+.+. +++..  .+.      ++ +.+.+..  ..+|++
T Consensus       140 ~~~~vlVlGa-Gg~g~aia~~L-~~~G~~~V~v~nR~~~ka~~la~~~~~~~~~~~------~~-~~~~~~~--~~aDiv  208 (297)
T 2egg_A          140 DGKRILVIGA-GGGARGIYFSL-LSTAAERIDMANRTVEKAERLVREGDERRSAYF------SL-AEAETRL--AEYDII  208 (297)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHH-HTTTCSEEEEECSSHHHHHHHHHHSCSSSCCEE------CH-HHHHHTG--GGCSEE
T ss_pred             CCCEEEEECc-HHHHHHHHHHH-HHCCCCEEEEEeCCHHHHHHHHHHhhhccCcee------eH-HHHHhhh--ccCCEE
Confidence            6789999997 99999988888 45788 9999999988876554 45441  111      11 1233322  368999


Q ss_pred             EECCCC
Q psy1959         237 FEAVGG  242 (296)
Q Consensus       237 ld~~g~  242 (296)
                      ++|++.
T Consensus       209 In~t~~  214 (297)
T 2egg_A          209 INTTSV  214 (297)
T ss_dssp             EECSCT
T ss_pred             EECCCC
Confidence            999985

>2axq_A Saccharopine dehydrogenase; rossmann fold variant, saccharopine reductase fold (domain II), alpha/beta protein; 1.70A {Saccharomyces cerevisiae}

Probab=94.66  E-value=0.22  Score=46.55  Aligned_cols=76  Identities=17%  Similarity=0.187  Sum_probs=50.7

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhc-CCcE-EEEcCCchhHHHHHHHHhCCCcccEEEE
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQK-GAWA-ALTFTNEKSLVNKVLEVSGGKYANVVFE  238 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~-g~~~-~~~~~~~~~~~~~i~~~~~~~g~d~vld  238 (296)
                      ++.+|+|+|+ |++|.+++..+.+..+.+|++++++.++.+.+.+. +... .++..+   . +.+.+..  .++|+|++
T Consensus        22 ~~k~VlIiGA-GgiG~aia~~L~~~~g~~V~v~~R~~~ka~~la~~~~~~~~~~D~~d---~-~~l~~~l--~~~DvVIn   94 (467)
T 2axq_A           22 MGKNVLLLGS-GFVAQPVIDTLAANDDINVTVACRTLANAQALAKPSGSKAISLDVTD---D-SALDKVL--ADNDVVIS   94 (467)
T ss_dssp             -CEEEEEECC-STTHHHHHHHHHTSTTEEEEEEESSHHHHHHHHGGGTCEEEECCTTC---H-HHHHHHH--HTSSEEEE
T ss_pred             CCCEEEEECC-hHHHHHHHHHHHhCCCCeEEEEECCHHHHHHHHHhcCCcEEEEecCC---H-HHHHHHH--cCCCEEEE
Confidence            4578999997 99999988887443367999999998887766543 3322 122322   1 1233332  26899999


Q ss_pred             CCCCc
Q psy1959         239 AVGGE  243 (296)
Q Consensus       239 ~~g~~  243 (296)
                      |++..
T Consensus        95 ~tp~~   99 (467)
T 2axq_A           95 LIPYT   99 (467)
T ss_dssp             CSCGG
T ss_pred             CCchh
Confidence            99863

>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A*

Probab=94.65  E-value=0.035  Score=46.56  Aligned_cols=100  Identities=16%  Similarity=0.145  Sum_probs=67.1

Q ss_pred             HHcCCCCCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHh----cCCcE-EEEcCCchhHHHHHHHHhC
Q psy1959         155 RHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQ----KGAWA-ALTFTNEKSLVNKVLEVSG  229 (296)
Q Consensus       155 ~~~~~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~----~g~~~-~~~~~~~~~~~~~i~~~~~  229 (296)
                      +...++++++||-.|+ | .|..+..+++ ..+.+|+.++.+++..+.+++    .+... .+...+   ..   .....
T Consensus        85 ~~l~~~~~~~vLdiG~-G-~G~~~~~la~-~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d---~~---~~~~~  155 (235)
T 1jg1_A           85 EIANLKPGMNILEVGT-G-SGWNAALISE-IVKTDVYTIERIPELVEFAKRNLERAGVKNVHVILGD---GS---KGFPP  155 (235)
T ss_dssp             HHHTCCTTCCEEEECC-T-TSHHHHHHHH-HHCSCEEEEESCHHHHHHHHHHHHHTTCCSEEEEESC---GG---GCCGG
T ss_pred             HhcCCCCCCEEEEEeC-C-cCHHHHHHHH-HhCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEECC---cc---cCCCC
Confidence            4557889999999996 5 6888889994 344899999999888777765    34322 222222   10   01111


Q ss_pred             CCcccEEEECCCC-ccHHHHHHHhhccCceEEeecc
Q psy1959         230 GKYANVVFEAVGG-EDKTDLIRQKGAWAALTFTNEK  264 (296)
Q Consensus       230 ~~g~d~vld~~g~-~~~~~~~~~lg~~~g~~~~~~~  264 (296)
                      ...+|+|+.+..- .....+.++| +++|.+.+...
T Consensus       156 ~~~fD~Ii~~~~~~~~~~~~~~~L-~pgG~lvi~~~  190 (235)
T 1jg1_A          156 KAPYDVIIVTAGAPKIPEPLIEQL-KIGGKLIIPVG  190 (235)
T ss_dssp             GCCEEEEEECSBBSSCCHHHHHTE-EEEEEEEEEEC
T ss_pred             CCCccEEEECCcHHHHHHHHHHhc-CCCcEEEEEEe
Confidence            2358999987776 4556788888 89998866543

>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C*

Probab=94.63  E-value=0.17  Score=42.57  Aligned_cols=98  Identities=11%  Similarity=0.085  Sum_probs=69.0

Q ss_pred             HHcCCCCCcEEEEEcCCCcHHHHHHHHHHHhC-CCEEEEEeCCcchHHHHHhc----CCc--EEEEcCCchhHHHHHHHH
Q psy1959         155 RHAKLKEKQTVLVTAAGGGLGLAAVDMATKIY-KAKVIGVCNSEDKTDLIRQK----GAW--AALTFTNEKSLVNKVLEV  227 (296)
Q Consensus       155 ~~~~~~~g~~vlI~Ga~g~vG~aa~~la~~~~-g~~Vi~~~~~~~~~~~~~~~----g~~--~~~~~~~~~~~~~~i~~~  227 (296)
                      ...+++++++|+-.|+ |. |..+..+++... +.+|+.++.+++..+.+++.    |..  ..+...+   ..    +.
T Consensus        87 ~~~~~~~~~~vldiG~-G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~v~~~~~d---~~----~~  157 (255)
T 3mb5_A           87 AYAGISPGDFIVEAGV-GS-GALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAGFDDRVTIKLKD---IY----EG  157 (255)
T ss_dssp             HHTTCCTTCEEEEECC-TT-SHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHTCTTTEEEECSC---GG----GC
T ss_pred             HhhCCCCCCEEEEecC-Cc-hHHHHHHHHHhCCCeEEEEEecCHHHHHHHHHHHHHcCCCCceEEEECc---hh----hc
Confidence            5678889999999996 54 888888884323 67999999999888777653    433  2222222   11    11


Q ss_pred             hCCCcccEEEECCCC--ccHHHHHHHhhccCceEEee
Q psy1959         228 SGGKYANVVFEAVGG--EDKTDLIRQKGAWAALTFTN  262 (296)
Q Consensus       228 ~~~~g~d~vld~~g~--~~~~~~~~~lg~~~g~~~~~  262 (296)
                      .....+|+++.....  ..+..+.+.| +++|.+.+.
T Consensus       158 ~~~~~~D~v~~~~~~~~~~l~~~~~~L-~~gG~l~~~  193 (255)
T 3mb5_A          158 IEEENVDHVILDLPQPERVVEHAAKAL-KPGGFFVAY  193 (255)
T ss_dssp             CCCCSEEEEEECSSCGGGGHHHHHHHE-EEEEEEEEE
T ss_pred             cCCCCcCEEEECCCCHHHHHHHHHHHc-CCCCEEEEE
Confidence            234469999988776  3788999999 888888543

>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae}

Probab=94.63  E-value=0.16  Score=39.97  Aligned_cols=101  Identities=13%  Similarity=0.067  Sum_probs=66.6

Q ss_pred             HHcCCCCCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHh----cCCc-EEEEcCCchhHHHHHHHHhC
Q psy1959         155 RHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQ----KGAW-AALTFTNEKSLVNKVLEVSG  229 (296)
Q Consensus       155 ~~~~~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~----~g~~-~~~~~~~~~~~~~~i~~~~~  229 (296)
                      ....++++++||-.|+ |. |..+..+++...+.+|++++.+++..+.+++    .+.. .++...+..   +.+..  .
T Consensus        19 ~~~~~~~~~~vldiG~-G~-G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~---~~~~~--~   91 (178)
T 3hm2_A           19 SALAPKPHETLWDIGG-GS-GSIAIEWLRSTPQTTAVCFEISEERRERILSNAINLGVSDRIAVQQGAP---RAFDD--V   91 (178)
T ss_dssp             HHHCCCTTEEEEEEST-TT-THHHHHHHTTSSSEEEEEECSCHHHHHHHHHHHHTTTCTTSEEEECCTT---GGGGG--C
T ss_pred             HHhcccCCCeEEEeCC-CC-CHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHHHHhCCCCCEEEecchH---hhhhc--c
Confidence            4557789999999996 54 8889999943236799999999988877764    3443 222222211   11111  1


Q ss_pred             CCcccEEEECCCCc---cHHHHHHHhhccCceEEeec
Q psy1959         230 GKYANVVFEAVGGE---DKTDLIRQKGAWAALTFTNE  263 (296)
Q Consensus       230 ~~g~d~vld~~g~~---~~~~~~~~lg~~~g~~~~~~  263 (296)
                      ...+|+++......   .+..+.+.| +++|.+.+..
T Consensus        92 ~~~~D~i~~~~~~~~~~~l~~~~~~L-~~gG~l~~~~  127 (178)
T 3hm2_A           92 PDNPDVIFIGGGLTAPGVFAAAWKRL-PVGGRLVANA  127 (178)
T ss_dssp             CSCCSEEEECC-TTCTTHHHHHHHTC-CTTCEEEEEE
T ss_pred             CCCCCEEEECCcccHHHHHHHHHHhc-CCCCEEEEEe
Confidence            15799999766542   578888888 8899886543

>2x6t_A ADP-L-glycero-D-manno-heptose-6-epimerase; isomerase, carbohydrate metabolism, stress response; HET: NAP ADP BMA; 2.36A {Escherichia coli} PDB: 2x86_A*

Probab=94.61  E-value=0.035  Score=49.47  Aligned_cols=76  Identities=17%  Similarity=0.175  Sum_probs=45.7

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCC-CEEEEEeCCcchHHHHHhc-CCcEEEEcCCchhHHHHHHHHhCC---CcccE
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYK-AKVIGVCNSEDKTDLIRQK-GAWAALTFTNEKSLVNKVLEVSGG---KYANV  235 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g-~~Vi~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~i~~~~~~---~g~d~  235 (296)
                      ++.+|+|+|++|.+|..+++.+ ...| .+|+++++++.+.. +..+ +.....+..+    .+.+.++...   .++|+
T Consensus        45 ~~~~vlVtGatG~iG~~l~~~L-~~~g~~~V~~~~r~~~~~~-~~~~~~~~~~~d~~~----~~~~~~~~~~~~~~~~d~  118 (357)
T 2x6t_A           45 EGRMIIVTGGAGFIGSNIVKAL-NDKGITDILVVDNLKDGTK-FVNLVDLNIADYMDK----EDFLIQIMAGEEFGDVEA  118 (357)
T ss_dssp             ---CEEEETTTSHHHHHHHHHH-HHTTCCCEEEEECCSSGGG-GGGTTTSCCSEEEEH----HHHHHHHHTTCCCSSCCE
T ss_pred             CCCEEEEECCCcHHHHHHHHHH-HHCCCcEEEEEecCCCcch-hhcccCceEeeecCc----HHHHHHHHhhcccCCCCE
Confidence            3567999999999999988877 4468 89999998765421 1111 1111112222    2233333322   26999


Q ss_pred             EEECCCC
Q psy1959         236 VFEAVGG  242 (296)
Q Consensus       236 vld~~g~  242 (296)
                      ||.+.+.
T Consensus       119 Vih~A~~  125 (357)
T 2x6t_A          119 IFHEGAC  125 (357)
T ss_dssp             EEECCSC
T ss_pred             EEECCcc
Confidence            9999884

>2hun_A 336AA long hypothetical DTDP-glucose 4,6-dehydrat; rossmann fold, structural genomics, NPPSFA; HET: NAD; 2.07A {Pyrococcus horikoshii}

Probab=94.60  E-value=0.079  Score=46.52  Aligned_cols=75  Identities=13%  Similarity=0.102  Sum_probs=45.8

Q ss_pred             CcEEEEEcCCCcHHHHHHHHHHHhC-CCEEEEEeCCc--chHHHHHhc--CCcE-EE--EcCCchhHHHHHHHHhCCCcc
Q psy1959         162 KQTVLVTAAGGGLGLAAVDMATKIY-KAKVIGVCNSE--DKTDLIRQK--GAWA-AL--TFTNEKSLVNKVLEVSGGKYA  233 (296)
Q Consensus       162 g~~vlI~Ga~g~vG~aa~~la~~~~-g~~Vi~~~~~~--~~~~~~~~~--g~~~-~~--~~~~~~~~~~~i~~~~~~~g~  233 (296)
                      +.+|+|+|++|.+|..+++.+.+.. +.+|+++++..  .+.+.+.++  +... .+  +..+    .+.+.++.  .++
T Consensus         3 ~m~vlVTGatG~iG~~l~~~L~~~g~~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~d----~~~~~~~~--~~~   76 (336)
T 2hun_A            3 SMKLLVTGGMGFIGSNFIRYILEKHPDWEVINIDKLGYGSNPANLKDLEDDPRYTFVKGDVAD----YELVKELV--RKV   76 (336)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHCTTCEEEEEECCCTTCCGGGGTTTTTCTTEEEEECCTTC----HHHHHHHH--HTC
T ss_pred             CCeEEEECCCchHHHHHHHHHHHhCCCCEEEEEecCcccCchhHHhhhccCCceEEEEcCCCC----HHHHHHHh--hCC
Confidence            3579999999999999887773432 38999998753  222222222  1111 22  2223    22333333  379


Q ss_pred             cEEEECCCC
Q psy1959         234 NVVFEAVGG  242 (296)
Q Consensus       234 d~vld~~g~  242 (296)
                      |+||.+.|.
T Consensus        77 d~vih~A~~   85 (336)
T 2hun_A           77 DGVVHLAAE   85 (336)
T ss_dssp             SEEEECCCC
T ss_pred             CEEEECCCC
Confidence            999999985

>2a35_A Hypothetical protein PA4017; alpha-beta-alpha sandwich, structura genomics, PSI, protein structure initiative; 1.50A {Pseudomonas aeruginosa} SCOP: c.2.1.2

Probab=94.57  E-value=0.039  Score=45.10  Aligned_cols=38  Identities=24%  Similarity=0.161  Sum_probs=32.2

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCC--EEEEEeCCcch
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKA--KVIGVCNSEDK  199 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~--~Vi~~~~~~~~  199 (296)
                      .+.+|+|+|++|.+|...++.+ ...|.  +|+++++++++
T Consensus         4 ~~~~vlVtGatG~iG~~l~~~l-~~~g~~~~V~~~~r~~~~   43 (215)
T 2a35_A            4 TPKRVLLAGATGLTGEHLLDRI-LSEPTLAKVIAPARKALA   43 (215)
T ss_dssp             CCCEEEEECTTSHHHHHHHHHH-HHCTTCCEEECCBSSCCC
T ss_pred             CCceEEEECCCcHHHHHHHHHH-HhCCCCCeEEEEeCCCcc
Confidence            3578999999999999988888 45687  99999988765

>1xgk_A Nitrogen metabolite repression regulator NMRA; rossmann fold, transcriptional regulation, short chain dehyd reductase, NADP binding; 1.40A {Emericella nidulans} SCOP: c.2.1.2 PDB: 1k6x_A* 1k6j_A 1k6i_A* 1ti7_A* 2vus_A 2vut_A* 2vuu_A*

Probab=94.57  E-value=0.19  Score=44.89  Aligned_cols=76  Identities=16%  Similarity=0.094  Sum_probs=49.0

Q ss_pred             CcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchH--HHHHhc-CCcEEEEcCCchhHHHHHHHHhCCCcccEEEE
Q psy1959         162 KQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKT--DLIRQK-GAWAALTFTNEKSLVNKVLEVSGGKYANVVFE  238 (296)
Q Consensus       162 g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~--~~~~~~-g~~~~~~~~~~~~~~~~i~~~~~~~g~d~vld  238 (296)
                      +.+|+|+|++|.+|..+++.+ ...|.+|++++++.++.  +.+.+. +. ..+..+...+ .+.+.+...  ++|++|.
T Consensus         5 ~~~ilVtGatG~iG~~l~~~L-~~~g~~V~~~~R~~~~~~~~~l~~~~~v-~~v~~D~l~d-~~~l~~~~~--~~d~Vi~   79 (352)
T 1xgk_A            5 KKTIAVVGATGRQGASLIRVA-AAVGHHVRAQVHSLKGLIAEELQAIPNV-TLFQGPLLNN-VPLMDTLFE--GAHLAFI   79 (352)
T ss_dssp             CCCEEEESTTSHHHHHHHHHH-HHTTCCEEEEESCSCSHHHHHHHTSTTE-EEEESCCTTC-HHHHHHHHT--TCSEEEE
T ss_pred             CCEEEEECCCCHHHHHHHHHH-HhCCCEEEEEECCCChhhHHHHhhcCCc-EEEECCccCC-HHHHHHHHh--cCCEEEE
Confidence            567999999999999988877 34689999999887765  334433 32 2222220011 223444442  6899998


Q ss_pred             CCCC
Q psy1959         239 AVGG  242 (296)
Q Consensus       239 ~~g~  242 (296)
                      +.+.
T Consensus        80 ~a~~   83 (352)
T 1xgk_A           80 NTTS   83 (352)
T ss_dssp             CCCS
T ss_pred             cCCC
Confidence            7754

>2p4h_X Vestitone reductase; NADPH-dependent reductase, isoflavonoid, plant protein; 1.40A {Medicago sativa}

Probab=94.56  E-value=0.088  Score=45.87  Aligned_cols=35  Identities=23%  Similarity=0.055  Sum_probs=29.1

Q ss_pred             CcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeC-Cc
Q psy1959         162 KQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCN-SE  197 (296)
Q Consensus       162 g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~-~~  197 (296)
                      |++|||+|++|.+|..+++.+ ...|.+|+++++ +.
T Consensus         1 ~k~vlVTGatG~iG~~l~~~L-~~~G~~V~~~~r~~~   36 (322)
T 2p4h_X            1 KGRVCVTGGTGFLGSWIIKSL-LENGYSVNTTIRADP   36 (322)
T ss_dssp             CCEEEEESTTSHHHHHHHHHH-HHTTCEEEEECCCC-
T ss_pred             CCEEEEECChhHHHHHHHHHH-HHCCCEEEEEEeCCc
Confidence            568999999999999988877 457999998887 44

>1p9l_A Dihydrodipicolinate reductase; oxidoreductase, lysine biosynthesis, NADH binding specificity, TB structural genomics consortium; HET: NAD PDC PG4; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.3 d.81.1.3 PDB: 1c3v_A* 1yl5_A 1yl7_A* 1yl6_A*

Probab=94.51  E-value=0.16  Score=43.24  Aligned_cols=78  Identities=15%  Similarity=0.148  Sum_probs=55.3

Q ss_pred             EEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCcEEEEcCCchhHHHHHHHHhCCCcccEEEECCCC
Q psy1959         164 TVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNKVLEVSGGKYANVVFEAVGG  242 (296)
Q Consensus       164 ~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~g~d~vld~~g~  242 (296)
                      +|+|.|++|.+|+..++.+....+.+++.+....+..+.+....+|.+++.+.+....+.+.... ..|.++|+.+.|-
T Consensus         2 kV~V~Ga~G~mG~~i~~~~~~~~~~elva~~d~~~dl~~~~~~~~DvvIDfT~p~a~~~~~~~a~-~~g~~~VigTTG~   79 (245)
T 1p9l_A            2 RVGVLGAKGKVGTTMVRAVAAADDLTLSAELDAGDPLSLLTDGNTEVVIDFTHPDVVMGNLEFLI-DNGIHAVVGTTGF   79 (245)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHCTTCEEEEEECTTCCTHHHHHTTCCEEEECSCTTTHHHHHHHHH-HTTCEEEECCCCC
T ss_pred             EEEEECCCCHHHHHHHHHHHhCCCCEEEEEEccCCCHHHHhccCCcEEEEccChHHHHHHHHHHH-HcCCCEEEcCCCC
Confidence            58999999999999999884444888876665444455444457888888876444444444433 3489999999986

>4egb_A DTDP-glucose 4,6-dehydratase; rhamnose pathway, center for structural genomics of infectio diseases, csgid, niaid; HET: NAD SUC; 3.00A {Bacillus anthracis}

Probab=94.46  E-value=0.045  Score=48.38  Aligned_cols=77  Identities=14%  Similarity=0.097  Sum_probs=46.0

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCC--CEEEEEeCCc--chHHHHHhcC--Cc-EEE--EcCCchhHHHHHHHHhCCC
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYK--AKVIGVCNSE--DKTDLIRQKG--AW-AAL--TFTNEKSLVNKVLEVSGGK  231 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g--~~Vi~~~~~~--~~~~~~~~~g--~~-~~~--~~~~~~~~~~~i~~~~~~~  231 (296)
                      .+.+|||+|++|.+|..+++.+ ...|  .+|++.++..  .....+..+.  .. ..+  +..+...    +.++..+.
T Consensus        23 ~~~~vlVtGatG~iG~~l~~~L-~~~g~~~~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~----~~~~~~~~   97 (346)
T 4egb_A           23 NAMNILVTGGAGFIGSNFVHYM-LQSYETYKIINFDALTYSGNLNNVKSIQDHPNYYFVKGEIQNGEL----LEHVIKER   97 (346)
T ss_dssp             -CEEEEEETTTSHHHHHHHHHH-HHHCTTEEEEEEECCCTTCCGGGGTTTTTCTTEEEEECCTTCHHH----HHHHHHHH
T ss_pred             CCCeEEEECCccHHHHHHHHHH-HhhCCCcEEEEEeccccccchhhhhhhccCCCeEEEEcCCCCHHH----HHHHHhhc
Confidence            4678999999999999988877 3457  6888887653  2223333221  11 222  2233122    33332222


Q ss_pred             cccEEEECCCC
Q psy1959         232 YANVVFEAVGG  242 (296)
Q Consensus       232 g~d~vld~~g~  242 (296)
                      ++|+||.+.+.
T Consensus        98 ~~d~Vih~A~~  108 (346)
T 4egb_A           98 DVQVIVNFAAE  108 (346)
T ss_dssp             TCCEEEECCCC
T ss_pred             CCCEEEECCcc
Confidence            59999999884

>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli}

Probab=94.45  E-value=0.23  Score=40.35  Aligned_cols=100  Identities=13%  Similarity=0.059  Sum_probs=68.3

Q ss_pred             HHcCCCCCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhc----CCc-EEEEcCCchhHHHHHHHHhC
Q psy1959         155 RHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQK----GAW-AALTFTNEKSLVNKVLEVSG  229 (296)
Q Consensus       155 ~~~~~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~----g~~-~~~~~~~~~~~~~~i~~~~~  229 (296)
                      +...++++++||-.|+ | .|..+..++ +. +.+|+.++.+++..+.+++.    +.. ..+...+..+   ..   ..
T Consensus        71 ~~l~~~~~~~vLdiG~-G-~G~~~~~la-~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~---~~---~~  140 (210)
T 3lbf_A           71 ELLELTPQSRVLEIGT-G-SGYQTAILA-HL-VQHVCSVERIKGLQWQARRRLKNLDLHNVSTRHGDGWQ---GW---QA  140 (210)
T ss_dssp             HHTTCCTTCEEEEECC-T-TSHHHHHHH-HH-SSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGG---CC---GG
T ss_pred             HhcCCCCCCEEEEEcC-C-CCHHHHHHH-Hh-CCEEEEEecCHHHHHHHHHHHHHcCCCceEEEECCccc---CC---cc
Confidence            5567889999999996 5 488888898 44 88999999999988777653    433 2222222111   01   11


Q ss_pred             CCcccEEEECCCC-ccHHHHHHHhhccCceEEeeccc
Q psy1959         230 GKYANVVFEAVGG-EDKTDLIRQKGAWAALTFTNEKS  265 (296)
Q Consensus       230 ~~g~d~vld~~g~-~~~~~~~~~lg~~~g~~~~~~~~  265 (296)
                      ...+|+++....- .....+.+.| +++|.+.+....
T Consensus       141 ~~~~D~i~~~~~~~~~~~~~~~~L-~pgG~lv~~~~~  176 (210)
T 3lbf_A          141 RAPFDAIIVTAAPPEIPTALMTQL-DEGGILVLPVGE  176 (210)
T ss_dssp             GCCEEEEEESSBCSSCCTHHHHTE-EEEEEEEEEECS
T ss_pred             CCCccEEEEccchhhhhHHHHHhc-ccCcEEEEEEcC
Confidence            3479999997665 3455678888 999988776544

>4ggo_A Trans-2-enoyl-COA reductase; rossmann fold, oxidoreductase; 2.00A {Treponema denticola atcc 35405} PDB: 4ggp_A

Probab=94.43  E-value=0.28  Score=44.69  Aligned_cols=84  Identities=20%  Similarity=0.298  Sum_probs=52.4

Q ss_pred             CCCCCcEEEEEcCCCcHHHHH-HHHHHHhCCCEEEEEeCCcch----------------HHHHHhcCCcEE-EEc--CCc
Q psy1959         158 KLKEKQTVLVTAAGGGLGLAA-VDMATKIYKAKVIGVCNSEDK----------------TDLIRQKGAWAA-LTF--TNE  217 (296)
Q Consensus       158 ~~~~g~~vlI~Ga~g~vG~aa-~~la~~~~g~~Vi~~~~~~~~----------------~~~~~~~g~~~~-~~~--~~~  217 (296)
                      ....++++||+|+++++|+++ +.+| ...|+.++.+....+.                .+.+++.|.... ++-  .+.
T Consensus        46 ~~~~pK~vLVtGaSsGiGlA~AialA-f~~GA~vi~v~~~~~~~~~~~atag~~~~~a~~~~i~~~G~~a~~i~~Dv~d~  124 (401)
T 4ggo_A           46 GAKAPKNVLVLGCSNGYGLASRITAA-FGYGAATIGVSFEKAGSETKYGTPGWYNNLAFDEAAKREGLYSVTIDGDAFSD  124 (401)
T ss_dssp             TSCCCCEEEEESCSSHHHHHHHHHHH-HHHCCEEEEEECCCCCCSSSCCCHHHHHHHHHHHHHHHHTCCEEEEESCTTSH
T ss_pred             ccCCCCEEEEECCCCcHHHHHHHHHH-hhCCCCEEEEecCCcccccccccccchhHHHHHHHHHHcCCCceeEeCCCCCH
Confidence            345679999999999999985 4555 4468998888764432                134556666544 332  221


Q ss_pred             hhHHHHHHHHh-CCCcccEEEECCCC
Q psy1959         218 KSLVNKVLEVS-GGKYANVVFEAVGG  242 (296)
Q Consensus       218 ~~~~~~i~~~~-~~~g~d~vld~~g~  242 (296)
                      +...+.+.++. ...++|+++.+++.
T Consensus       125 e~i~~vi~~i~~~~G~IDiLVhS~A~  150 (401)
T 4ggo_A          125 EIKAQVIEEAKKKGIKFDLIVYSLAS  150 (401)
T ss_dssp             HHHHHHHHHHHHTTCCEEEEEECCCC
T ss_pred             HHHHHHHHHHHHhcCCCCEEEEeccc
Confidence            23333333322 23479999999885

>1z45_A GAL10 bifunctional protein; epimerase, mutarotase, metabolism, isomerase; HET: GAL NAD GUD; 1.85A {Saccharomyces cerevisiae} SCOP: b.30.5.4 c.2.1.2

Probab=94.43  E-value=0.15  Score=49.87  Aligned_cols=77  Identities=17%  Similarity=0.085  Sum_probs=48.7

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcch----HHHHH---hcCCcEE-EEcCCchhHHHHHHHHhCCCc
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDK----TDLIR---QKGAWAA-LTFTNEKSLVNKVLEVSGGKY  232 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~----~~~~~---~~g~~~~-~~~~~~~~~~~~i~~~~~~~g  232 (296)
                      .+.+|+|+|++|.+|..+++.+ ...|.+|+++++...+    .+.++   ..++..+ .+..+...+.+.+.+    .+
T Consensus        10 ~~~~ilVTGatG~IG~~l~~~L-~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~v~~v~~Dl~d~~~l~~~~~~----~~   84 (699)
T 1z45_A           10 TSKIVLVTGGAGYIGSHTVVEL-IENGYDCVVADNLSNSTYDSVARLEVLTKHHIPFYEVDLCDRKGLEKVFKE----YK   84 (699)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHH-HHTTCEEEEEECCSSCCTHHHHHHHHHHTSCCCEEECCTTCHHHHHHHHHH----SC
T ss_pred             CCCEEEEECCCCHHHHHHHHHH-HHCcCEEEEEECCCcchHHHHHHHhhccCCceEEEEcCCCCHHHHHHHHHh----CC
Confidence            4679999999999999988877 4469999999876543    12222   2233222 233332223332322    27


Q ss_pred             ccEEEECCCC
Q psy1959         233 ANVVFEAVGG  242 (296)
Q Consensus       233 ~d~vld~~g~  242 (296)
                      +|+||.+.+.
T Consensus        85 ~D~Vih~A~~   94 (699)
T 1z45_A           85 IDSVIHFAGL   94 (699)
T ss_dssp             CCEEEECCSC
T ss_pred             CCEEEECCcc
Confidence            9999999885

>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1

Probab=94.41  E-value=0.11  Score=43.08  Aligned_cols=100  Identities=14%  Similarity=0.072  Sum_probs=65.0

Q ss_pred             HcCCCCCcEEEEEcCCCcHHHHHHHHHHHhC--CCEEEEEeCCcchHHHHHhc----CCc--EEEEcCCchhHHHHHHHH
Q psy1959         156 HAKLKEKQTVLVTAAGGGLGLAAVDMATKIY--KAKVIGVCNSEDKTDLIRQK----GAW--AALTFTNEKSLVNKVLEV  227 (296)
Q Consensus       156 ~~~~~~g~~vlI~Ga~g~vG~aa~~la~~~~--g~~Vi~~~~~~~~~~~~~~~----g~~--~~~~~~~~~~~~~~i~~~  227 (296)
                      .....++++||-.|+ | .|..+..++ +..  +.+|+.++.+++..+.+++.    |..  ..+...   +..+.+.+.
T Consensus        64 l~~~~~~~~vLdiG~-G-~G~~~~~la-~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~i~~~~~---d~~~~~~~~  137 (229)
T 2avd_A           64 LARLIQAKKALDLGT-F-TGYSALALA-LALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLK---PALETLDEL  137 (229)
T ss_dssp             HHHHTTCCEEEEECC-T-TSHHHHHHH-TTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEES---CHHHHHHHH
T ss_pred             HHHhcCCCEEEEEcC-C-ccHHHHHHH-HhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCeEEEEEc---CHHHHHHHH
Confidence            334567889999985 4 688888898 443  57999999999887777653    432  222222   223333333


Q ss_pred             hC-C--CcccEEEECCCC----ccHHHHHHHhhccCceEEee
Q psy1959         228 SG-G--KYANVVFEAVGG----EDKTDLIRQKGAWAALTFTN  262 (296)
Q Consensus       228 ~~-~--~g~d~vld~~g~----~~~~~~~~~lg~~~g~~~~~  262 (296)
                      .. +  ..+|+++.....    ..+..+.+.| +++|.+.+.
T Consensus       138 ~~~~~~~~~D~v~~d~~~~~~~~~l~~~~~~L-~pgG~lv~~  178 (229)
T 2avd_A          138 LAAGEAGTFDVAVVDADKENCSAYYERCLQLL-RPGGILAVL  178 (229)
T ss_dssp             HHTTCTTCEEEEEECSCSTTHHHHHHHHHHHE-EEEEEEEEE
T ss_pred             HhcCCCCCccEEEECCCHHHHHHHHHHHHHHc-CCCeEEEEE
Confidence            21 1  479998875443    3577788888 888888664

>4dqv_A Probable peptide synthetase NRP (peptide synthase; GXXGXXG motif, rossmann fold, short chain dehydrogenase/REDU family, reductase; 2.30A {Mycobacterium tuberculosis}

Probab=94.39  E-value=0.13  Score=48.11  Aligned_cols=42  Identities=29%  Similarity=0.264  Sum_probs=33.6

Q ss_pred             CCCCcEEEEEcCCCcHHHHHHHHHHHhC--CCEEEEEeCCcchH
Q psy1959         159 LKEKQTVLVTAAGGGLGLAAVDMATKIY--KAKVIGVCNSEDKT  200 (296)
Q Consensus       159 ~~~g~~vlI~Ga~g~vG~aa~~la~~~~--g~~Vi~~~~~~~~~  200 (296)
                      ...+.+|+|+|++|.+|..+++.+.+..  |.+|+++++++++.
T Consensus        70 ~~~~~~VLVTGatG~IG~~l~~~Ll~~~~~g~~V~~l~R~~~~~  113 (478)
T 4dqv_A           70 SPELRTVLLTGATGFLGRYLVLELLRRLDVDGRLICLVRAESDE  113 (478)
T ss_dssp             CSCCCEEEEECTTSHHHHHHHHHHHHHSCTTCEEEEEECSSSHH
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHhcCCCCCEEEEEECCCCcH
Confidence            3468999999999999998877663432  78999999987654

>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0

Probab=94.39  E-value=0.26  Score=39.97  Aligned_cols=99  Identities=13%  Similarity=0.126  Sum_probs=66.0

Q ss_pred             HHcCCCCCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhc----CCc-EEEEcCCchhHHHHHHHHhC
Q psy1959         155 RHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQK----GAW-AALTFTNEKSLVNKVLEVSG  229 (296)
Q Consensus       155 ~~~~~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~----g~~-~~~~~~~~~~~~~~i~~~~~  229 (296)
                      ....++++++||-.|+ | .|..+..+++.....+|++++.+++..+.+++.    +.+ ..+...+..+   .+   ..
T Consensus        34 ~~l~~~~~~~vLDiG~-G-~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~---~~---~~  105 (204)
T 3e05_A           34 SKLRLQDDLVMWDIGA-G-SASVSIEASNLMPNGRIFALERNPQYLGFIRDNLKKFVARNVTLVEAFAPE---GL---DD  105 (204)
T ss_dssp             HHTTCCTTCEEEEETC-T-TCHHHHHHHHHCTTSEEEEEECCHHHHHHHHHHHHHHTCTTEEEEECCTTT---TC---TT
T ss_pred             HHcCCCCCCEEEEECC-C-CCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeCChhh---hh---hc
Confidence            4567889999999996 5 388888999432247999999999988877653    432 2122211011   11   11


Q ss_pred             CCcccEEEECCCC----ccHHHHHHHhhccCceEEee
Q psy1959         230 GKYANVVFEAVGG----EDKTDLIRQKGAWAALTFTN  262 (296)
Q Consensus       230 ~~g~d~vld~~g~----~~~~~~~~~lg~~~g~~~~~  262 (296)
                      ...+|+++.....    ..+..+.+.| +++|.+.+.
T Consensus       106 ~~~~D~i~~~~~~~~~~~~l~~~~~~L-kpgG~l~~~  141 (204)
T 3e05_A          106 LPDPDRVFIGGSGGMLEEIIDAVDRRL-KSEGVIVLN  141 (204)
T ss_dssp             SCCCSEEEESCCTTCHHHHHHHHHHHC-CTTCEEEEE
T ss_pred             CCCCCEEEECCCCcCHHHHHHHHHHhc-CCCeEEEEE
Confidence            2468999987652    4677788888 889988654

>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp}

Probab=94.37  E-value=0.036  Score=47.11  Aligned_cols=98  Identities=11%  Similarity=0.129  Sum_probs=64.2

Q ss_pred             CCCCCcEEEEEcCCCcHHHHHHHHHHHhC--CCEEEEEeCCcchHHHHHhc----CCc--EEEEcCCchhHHHHHHHHhC
Q psy1959         158 KLKEKQTVLVTAAGGGLGLAAVDMATKIY--KAKVIGVCNSEDKTDLIRQK----GAW--AALTFTNEKSLVNKVLEVSG  229 (296)
Q Consensus       158 ~~~~g~~vlI~Ga~g~vG~aa~~la~~~~--g~~Vi~~~~~~~~~~~~~~~----g~~--~~~~~~~~~~~~~~i~~~~~  229 (296)
                      ...++.+||=.|+ | .|..+..++ +..  +.+|+.++.+++..+.+++.    |..  ..+..   .+..+.+.....
T Consensus        60 ~~~~~~~VLdiG~-G-~G~~~~~la-~~~~~~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~---~d~~~~l~~~~~  133 (248)
T 3tfw_A           60 RLTQAKRILEIGT-L-GGYSTIWMA-RELPADGQLLTLEADAHHAQVARENLQLAGVDQRVTLRE---GPALQSLESLGE  133 (248)
T ss_dssp             HHHTCSEEEEECC-T-TSHHHHHHH-TTSCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEE---SCHHHHHHTCCS
T ss_pred             hhcCCCEEEEecC-C-chHHHHHHH-HhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEE---cCHHHHHHhcCC
Confidence            4457889999986 3 488888888 444  67999999999988777653    543  22222   233333333322


Q ss_pred             CCcccEEEECCCC----ccHHHHHHHhhccCceEEee
Q psy1959         230 GKYANVVFEAVGG----EDKTDLIRQKGAWAALTFTN  262 (296)
Q Consensus       230 ~~g~d~vld~~g~----~~~~~~~~~lg~~~g~~~~~  262 (296)
                      ...+|+|+-....    ..+..+.+.| +++|.+.+.
T Consensus       134 ~~~fD~V~~d~~~~~~~~~l~~~~~~L-kpGG~lv~~  169 (248)
T 3tfw_A          134 CPAFDLIFIDADKPNNPHYLRWALRYS-RPGTLIIGD  169 (248)
T ss_dssp             CCCCSEEEECSCGGGHHHHHHHHHHTC-CTTCEEEEE
T ss_pred             CCCeEEEEECCchHHHHHHHHHHHHhc-CCCeEEEEe
Confidence            3479999854433    2467777888 889988654

>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9

Probab=94.35  E-value=0.11  Score=40.40  Aligned_cols=79  Identities=13%  Similarity=0.147  Sum_probs=51.6

Q ss_pred             CcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCC-cchHHHHHh---cCCcEEEEcCCchhHHHHHHHHhCCCcccEEE
Q psy1959         162 KQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNS-EDKTDLIRQ---KGAWAALTFTNEKSLVNKVLEVSGGKYANVVF  237 (296)
Q Consensus       162 g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~-~~~~~~~~~---~g~~~~~~~~~~~~~~~~i~~~~~~~g~d~vl  237 (296)
                      ..+++|.|+ |.+|...++.+ ...|.+|++++++ +++.+.+.+   .|. .++..+. .+ .+.+.+. +-.++|.++
T Consensus         3 ~~~vlI~G~-G~vG~~la~~L-~~~g~~V~vid~~~~~~~~~~~~~~~~~~-~~i~gd~-~~-~~~l~~a-~i~~ad~vi   76 (153)
T 1id1_A            3 KDHFIVCGH-SILAINTILQL-NQRGQNVTVISNLPEDDIKQLEQRLGDNA-DVIPGDS-ND-SSVLKKA-GIDRCRAIL   76 (153)
T ss_dssp             CSCEEEECC-SHHHHHHHHHH-HHTTCCEEEEECCCHHHHHHHHHHHCTTC-EEEESCT-TS-HHHHHHH-TTTTCSEEE
T ss_pred             CCcEEEECC-CHHHHHHHHHH-HHCCCCEEEEECCChHHHHHHHHhhcCCC-eEEEcCC-CC-HHHHHHc-ChhhCCEEE
Confidence            467889997 99999998888 4579999999986 455555543   244 3333221 11 2233333 234799999


Q ss_pred             ECCCCccHH
Q psy1959         238 EAVGGEDKT  246 (296)
Q Consensus       238 d~~g~~~~~  246 (296)
                      -+++++..+
T Consensus        77 ~~~~~d~~n   85 (153)
T 1id1_A           77 ALSDNDADN   85 (153)
T ss_dssp             ECSSCHHHH
T ss_pred             EecCChHHH
Confidence            999985433

>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii}

Probab=94.31  E-value=0.2  Score=40.95  Aligned_cols=100  Identities=16%  Similarity=0.081  Sum_probs=67.3

Q ss_pred             HHcCCCCCcEEEEEcCCCcHHHHHHHHHHHhCC--CEEEEEeCCcchHHHHHhc----CCc-EEEEcCCchhHHHHHHHH
Q psy1959         155 RHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYK--AKVIGVCNSEDKTDLIRQK----GAW-AALTFTNEKSLVNKVLEV  227 (296)
Q Consensus       155 ~~~~~~~g~~vlI~Ga~g~vG~aa~~la~~~~g--~~Vi~~~~~~~~~~~~~~~----g~~-~~~~~~~~~~~~~~i~~~  227 (296)
                      +...++++++||-.|+ | .|..+..+++ ..+  .+|+.++.+++..+.+++.    +.. ..+...+   ....   .
T Consensus        71 ~~~~~~~~~~vLdiG~-G-~G~~~~~l~~-~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d---~~~~---~  141 (215)
T 2yxe_A           71 ELLDLKPGMKVLEIGT-G-CGYHAAVTAE-IVGEDGLVVSIERIPELAEKAERTLRKLGYDNVIVIVGD---GTLG---Y  141 (215)
T ss_dssp             HHTTCCTTCEEEEECC-T-TSHHHHHHHH-HHCTTSEEEEEESCHHHHHHHHHHHHHHTCTTEEEEESC---GGGC---C
T ss_pred             HhhCCCCCCEEEEECC-C-ccHHHHHHHH-HhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECC---cccC---C
Confidence            4567889999999997 5 4888888884 444  7999999999888777653    332 2222222   1110   1


Q ss_pred             hCCCcccEEEECCCC-ccHHHHHHHhhccCceEEeecc
Q psy1959         228 SGGKYANVVFEAVGG-EDKTDLIRQKGAWAALTFTNEK  264 (296)
Q Consensus       228 ~~~~g~d~vld~~g~-~~~~~~~~~lg~~~g~~~~~~~  264 (296)
                      .....+|+++.+..- .....+.++| +++|.+.+...
T Consensus       142 ~~~~~fD~v~~~~~~~~~~~~~~~~L-~pgG~lv~~~~  178 (215)
T 2yxe_A          142 EPLAPYDRIYTTAAGPKIPEPLIRQL-KDGGKLLMPVG  178 (215)
T ss_dssp             GGGCCEEEEEESSBBSSCCHHHHHTE-EEEEEEEEEES
T ss_pred             CCCCCeeEEEECCchHHHHHHHHHHc-CCCcEEEEEEC
Confidence            112469999988776 4556778888 88998866544

>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B*

Probab=94.31  E-value=0.12  Score=43.94  Aligned_cols=34  Identities=24%  Similarity=0.237  Sum_probs=28.1

Q ss_pred             CcEEEEEcCCCcHHHHHHHHHHHhCCC-EEEEEeCCc
Q psy1959         162 KQTVLVTAAGGGLGLAAVDMATKIYKA-KVIGVCNSE  197 (296)
Q Consensus       162 g~~vlI~Ga~g~vG~aa~~la~~~~g~-~Vi~~~~~~  197 (296)
                      +.+|+|.|+ |++|..+++.+ ...|. ++++++.+.
T Consensus        31 ~~~VlVvG~-Gg~G~~va~~L-a~~Gv~~i~lvD~d~   65 (249)
T 1jw9_B           31 DSRVLIVGL-GGLGCAASQYL-ASAGVGNLTLLDFDT   65 (249)
T ss_dssp             HCEEEEECC-SHHHHHHHHHH-HHHTCSEEEEECCCB
T ss_pred             CCeEEEEee-CHHHHHHHHHH-HHcCCCeEEEEcCCC
Confidence            478999997 99999988877 44687 899999876

>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans}

Probab=94.29  E-value=0.083  Score=44.31  Aligned_cols=98  Identities=15%  Similarity=0.173  Sum_probs=64.4

Q ss_pred             CCCCCcEEEEEcCCCcHHHHHHHHHHHhC--CCEEEEEeCCcchHHHHHhc----CCc--EEEEcCCchhHHHHHHHHhC
Q psy1959         158 KLKEKQTVLVTAAGGGLGLAAVDMATKIY--KAKVIGVCNSEDKTDLIRQK----GAW--AALTFTNEKSLVNKVLEVSG  229 (296)
Q Consensus       158 ~~~~g~~vlI~Ga~g~vG~aa~~la~~~~--g~~Vi~~~~~~~~~~~~~~~----g~~--~~~~~~~~~~~~~~i~~~~~  229 (296)
                      ...++++||-.|+ | .|..+..++ +..  +.+|+.++.+++..+.+++.    |..  ..+...   +..+.+.+...
T Consensus        57 ~~~~~~~VLdiG~-G-~G~~~~~la-~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~---d~~~~~~~~~~  130 (239)
T 2hnk_A           57 KISGAKRIIEIGT-F-TGYSSLCFA-SALPEDGKILCCDVSEEWTNVARKYWKENGLENKIFLKLG---SALETLQVLID  130 (239)
T ss_dssp             HHHTCSEEEEECC-T-TCHHHHHHH-HHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEES---CHHHHHHHHHH
T ss_pred             HhhCcCEEEEEeC-C-CCHHHHHHH-HhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEEC---CHHHHHHHHHh
Confidence            3457889999986 4 588888899 444  67999999999887777653    443  222222   22233332211


Q ss_pred             -------------C-CcccEEEECCCCc----cHHHHHHHhhccCceEEee
Q psy1959         230 -------------G-KYANVVFEAVGGE----DKTDLIRQKGAWAALTFTN  262 (296)
Q Consensus       230 -------------~-~g~d~vld~~g~~----~~~~~~~~lg~~~g~~~~~  262 (296)
                                   . ..+|+|+.....+    .+..+.+.| +++|.+.+.
T Consensus       131 ~~~~~~~~~~f~~~~~~fD~I~~~~~~~~~~~~l~~~~~~L-~pgG~lv~~  180 (239)
T 2hnk_A          131 SKSAPSWASDFAFGPSSIDLFFLDADKENYPNYYPLILKLL-KPGGLLIAD  180 (239)
T ss_dssp             CSSCCGGGTTTCCSTTCEEEEEECSCGGGHHHHHHHHHHHE-EEEEEEEEE
T ss_pred             hcccccccccccCCCCCcCEEEEeCCHHHHHHHHHHHHHHc-CCCeEEEEE
Confidence                         1 4799999876643    356677778 888888664

>2ggs_A 273AA long hypothetical DTDP-4-dehydrorhamnose reductase; alpha, beta, oxidoreductase; HET: NDP; 1.70A {Sulfolobus tokodaii}

Probab=94.17  E-value=0.11  Score=44.17  Aligned_cols=66  Identities=26%  Similarity=0.361  Sum_probs=45.1

Q ss_pred             EEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCcEEEEcCCchhHHHHHHHHhCCCcccEEEECCCC
Q psy1959         164 TVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNKVLEVSGGKYANVVFEAVGG  242 (296)
Q Consensus       164 ~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~g~d~vld~~g~  242 (296)
                      +++|+|++|.+|..+++.+ . .|.+|++++++++..     .+  ...+..+..++.+.+.+.    .+|+++++.|.
T Consensus         2 ~ilVtGatG~iG~~l~~~L-~-~g~~V~~~~r~~~~~-----~~--~~~Dl~~~~~~~~~~~~~----~~d~vi~~a~~   67 (273)
T 2ggs_A            2 RTLITGASGQLGIELSRLL-S-ERHEVIKVYNSSEIQ-----GG--YKLDLTDFPRLEDFIIKK----RPDVIINAAAM   67 (273)
T ss_dssp             CEEEETTTSHHHHHHHHHH-T-TTSCEEEEESSSCCT-----TC--EECCTTSHHHHHHHHHHH----CCSEEEECCCC
T ss_pred             EEEEECCCChhHHHHHHHH-h-cCCeEEEecCCCcCC-----CC--ceeccCCHHHHHHHHHhc----CCCEEEECCcc
Confidence            5899999999999999888 4 379999999876431     12  223333322333333322    58999999985

>2hrz_A AGR_C_4963P, nucleoside-diphosphate-sugar epimerase; agrobacterium tumefa structural genomics, PSI-2, protein structure initiative; 1.85A {Agrobacterium tumefaciens}

Probab=94.16  E-value=0.055  Score=47.76  Aligned_cols=74  Identities=11%  Similarity=0.001  Sum_probs=46.7

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCC-------CEEEEEeCCcchHHHHHhcCCcE-EE--EcCCchhHHHHHHHHhCC
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYK-------AKVIGVCNSEDKTDLIRQKGAWA-AL--TFTNEKSLVNKVLEVSGG  230 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g-------~~Vi~~~~~~~~~~~~~~~g~~~-~~--~~~~~~~~~~~i~~~~~~  230 (296)
                      .+.+|+|+|++|.+|..+++.+ ...|       .+|++++++.++...  ..+... .+  +..+...+.+.+.     
T Consensus        13 ~~~~vlVtGa~G~iG~~l~~~L-~~~g~~~~r~~~~V~~~~r~~~~~~~--~~~~~~~~~~~Dl~d~~~~~~~~~-----   84 (342)
T 2hrz_A           13 QGMHIAIIGAAGMVGRKLTQRL-VKDGSLGGKPVEKFTLIDVFQPEAPA--GFSGAVDARAADLSAPGEAEKLVE-----   84 (342)
T ss_dssp             SCEEEEEETTTSHHHHHHHHHH-HHHCEETTEEEEEEEEEESSCCCCCT--TCCSEEEEEECCTTSTTHHHHHHH-----
T ss_pred             cCCEEEEECCCcHHHHHHHHHH-HhcCCcccCCCceEEEEEccCCcccc--ccCCceeEEEcCCCCHHHHHHHHh-----
Confidence            4678999999999999988777 3457       799999987653321  111111 12  2233122222221     


Q ss_pred             CcccEEEECCCC
Q psy1959         231 KYANVVFEAVGG  242 (296)
Q Consensus       231 ~g~d~vld~~g~  242 (296)
                      .++|++|.+.+.
T Consensus        85 ~~~d~vih~A~~   96 (342)
T 2hrz_A           85 ARPDVIFHLAAI   96 (342)
T ss_dssp             TCCSEEEECCCC
T ss_pred             cCCCEEEECCcc
Confidence            379999999985

>3o8q_A Shikimate 5-dehydrogenase I alpha; structural genomics, center for structural genomics of infec diseases, csgid; HET: EPE; 1.45A {Vibrio cholerae biovar el tor} PDB: 3sef_A* 3pgj_A* 3o8q_B*

Probab=94.13  E-value=0.25  Score=42.98  Aligned_cols=68  Identities=16%  Similarity=0.205  Sum_probs=47.9

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCC-EEEEEeCCcchHHHHHh-cCC---cEEEEcCCchhHHHHHHHHhCCCcccE
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKA-KVIGVCNSEDKTDLIRQ-KGA---WAALTFTNEKSLVNKVLEVSGGKYANV  235 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~-~Vi~~~~~~~~~~~~~~-~g~---~~~~~~~~~~~~~~~i~~~~~~~g~d~  235 (296)
                      .+++++|+|+ |+.|.+++..+ ...|+ +|++..++.++.+.+.+ ++.   .....+.+   .         ...+|+
T Consensus       125 ~~k~vlvlGa-Gg~g~aia~~L-~~~G~~~v~v~~R~~~~a~~la~~~~~~~~~~~~~~~~---l---------~~~aDi  190 (281)
T 3o8q_A          125 KGATILLIGA-GGAARGVLKPL-LDQQPASITVTNRTFAKAEQLAELVAAYGEVKAQAFEQ---L---------KQSYDV  190 (281)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHH-HTTCCSEEEEEESSHHHHHHHHHHHGGGSCEEEEEGGG---C---------CSCEEE
T ss_pred             cCCEEEEECc-hHHHHHHHHHH-HhcCCCeEEEEECCHHHHHHHHHHhhccCCeeEeeHHH---h---------cCCCCE
Confidence            6889999997 99999988777 45786 99999999888765543 332   12232221   1         147899


Q ss_pred             EEECCCC
Q psy1959         236 VFEAVGG  242 (296)
Q Consensus       236 vld~~g~  242 (296)
                      +++++..
T Consensus       191 IInaTp~  197 (281)
T 3o8q_A          191 IINSTSA  197 (281)
T ss_dssp             EEECSCC
T ss_pred             EEEcCcC
Confidence            9998864

>3sc6_A DTDP-4-dehydrorhamnose reductase; RFBD, structural genomics, infectious diseases, bacillus anthracis STR. AMES, rhamnose biosynthetic pathway; HET: NAP; 2.65A {Bacillus anthracis} SCOP: c.2.1.0

Probab=94.13  E-value=0.074  Score=45.63  Aligned_cols=60  Identities=18%  Similarity=0.210  Sum_probs=42.6

Q ss_pred             EEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCcEEEEcCCchhHHHHHHHHhCCCcccEEEECCCC
Q psy1959         164 TVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNKVLEVSGGKYANVVFEAVGG  242 (296)
Q Consensus       164 ~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~g~d~vld~~g~  242 (296)
                      +|+|+|++|.+|..+++.+ ...|.+|+++++.+              .+..+...+.+.+.+.    ++|+++++.+.
T Consensus         7 ~ilVtGatG~iG~~l~~~L-~~~g~~V~~~~r~~--------------~D~~d~~~~~~~~~~~----~~d~vi~~a~~   66 (287)
T 3sc6_A            7 RVIITGANGQLGKQLQEEL-NPEEYDIYPFDKKL--------------LDITNISQVQQVVQEI----RPHIIIHCAAY   66 (287)
T ss_dssp             EEEEESTTSHHHHHHHHHS-CTTTEEEEEECTTT--------------SCTTCHHHHHHHHHHH----CCSEEEECCCC
T ss_pred             EEEEECCCCHHHHHHHHHH-HhCCCEEEEecccc--------------cCCCCHHHHHHHHHhc----CCCEEEECCcc
Confidence            7999999999999999888 55689999999732              1222313333333332    68999999875

>1e6u_A GDP-fucose synthetase; epimerase/reductase, SDR, RED; HET: NAP; 1.45A {Escherichia coli} SCOP: c.2.1.2 PDB: 1e7q_A* 1bsv_A* 1fxs_A* 1gfs_A 1e7s_A* 1bws_A* 1e7r_A*

Probab=94.09  E-value=0.11  Score=45.14  Aligned_cols=63  Identities=14%  Similarity=0.179  Sum_probs=43.1

Q ss_pred             CcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCcEEEEcCCchhHHHHHHHHhCCCcccEEEECCC
Q psy1959         162 KQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNKVLEVSGGKYANVVFEAVG  241 (296)
Q Consensus       162 g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~g~d~vld~~g  241 (296)
                      +.+|+|+|++|.+|..+++.+ ...|.+|++++++.+             .+..+...+.+.+.+    .++|+||.+.+
T Consensus         3 ~~~ilVtGatG~iG~~l~~~L-~~~g~~v~~~~r~~~-------------~D~~d~~~~~~~~~~----~~~d~vih~a~   64 (321)
T 1e6u_A            3 KQRVFIAGHRGMVGSAIRRQL-EQRGDVELVLRTRDE-------------LNLLDSRAVHDFFAS----ERIDQVYLAAA   64 (321)
T ss_dssp             CEEEEEETTTSHHHHHHHHHH-TTCTTEEEECCCTTT-------------CCTTCHHHHHHHHHH----HCCSEEEECCC
T ss_pred             CCEEEEECCCcHHHHHHHHHH-HhCCCeEEEEecCcc-------------CCccCHHHHHHHHHh----cCCCEEEEcCe
Confidence            468999999999999998888 557899988776521             122331233333322    16899999987


Q ss_pred             C
Q psy1959         242 G  242 (296)
Q Consensus       242 ~  242 (296)
                      .
T Consensus        65 ~   65 (321)
T 1e6u_A           65 K   65 (321)
T ss_dssp             C
T ss_pred             e
Confidence            5

>1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate pathway, dehydrogenase, oxidoreductase; 2.00A {Magnaporthe grisea} SCOP: c.2.1.3 d.81.1.2 PDB: 1e5l_A* 1e5q_A

Probab=94.09  E-value=0.31  Score=45.27  Aligned_cols=75  Identities=11%  Similarity=0.098  Sum_probs=48.8

Q ss_pred             CcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHh-cCCcEEEEcCCchhHHHHHHHHhCCCcccEEEECC
Q psy1959         162 KQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQ-KGAWAALTFTNEKSLVNKVLEVSGGKYANVVFEAV  240 (296)
Q Consensus       162 g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~~~g~d~vld~~  240 (296)
                      +.+|+|+| +|++|.++++.+ ...|.+|++++++.++.+.+.+ ++....+..+- .+. +.+.+...  ++|++++|+
T Consensus         3 ~k~VlViG-aG~iG~~ia~~L-~~~G~~V~v~~R~~~~a~~la~~~~~~~~~~~Dv-~d~-~~l~~~l~--~~DvVIn~a   76 (450)
T 1ff9_A            3 TKSVLMLG-SGFVTRPTLDVL-TDSGIKVTVACRTLESAKKLSAGVQHSTPISLDV-NDD-AALDAEVA--KHDLVISLI   76 (450)
T ss_dssp             CCEEEEEC-CSTTHHHHHHHH-HTTTCEEEEEESSHHHHHHTTTTCTTEEEEECCT-TCH-HHHHHHHT--TSSEEEECC
T ss_pred             CCEEEEEC-CCHHHHHHHHHH-HhCcCEEEEEECCHHHHHHHHHhcCCceEEEeec-CCH-HHHHHHHc--CCcEEEECC
Confidence            56899998 599999988888 4578999999998877765543 33212221111 122 23333332  799999999


Q ss_pred             CC
Q psy1959         241 GG  242 (296)
Q Consensus       241 g~  242 (296)
                      +.
T Consensus        77 ~~   78 (450)
T 1ff9_A           77 PY   78 (450)
T ss_dssp             C-
T ss_pred             cc
Confidence            86

>2p5y_A UDP-glucose 4-epimerase; TTHA0591, structural genomics, PSI; HET: NAD; 1.92A {Thermus thermophilus HB8} PDB: 2p5u_A*

Probab=94.08  E-value=0.13  Score=44.74  Aligned_cols=73  Identities=19%  Similarity=0.124  Sum_probs=44.9

Q ss_pred             EEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcc-hHHHHHhcCCcEE-EEcCCchhHHHHHHHHhCCCcccEEEECCC
Q psy1959         164 TVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSED-KTDLIRQKGAWAA-LTFTNEKSLVNKVLEVSGGKYANVVFEAVG  241 (296)
Q Consensus       164 ~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~-~~~~~~~~g~~~~-~~~~~~~~~~~~i~~~~~~~g~d~vld~~g  241 (296)
                      +|+|+|++|.+|..+++.+ ...|.+|+++++... +.+.+. .+...+ .+..+...+.+.+.+    .++|+++.+.+
T Consensus         2 ~vlVTGatG~iG~~l~~~L-~~~G~~V~~~~r~~~~~~~~~~-~~~~~~~~Dl~~~~~~~~~~~~----~~~d~vi~~a~   75 (311)
T 2p5y_A            2 RVLVTGGAGFIGSHIVEDL-LARGLEVAVLDNLATGKRENVP-KGVPFFRVDLRDKEGVERAFRE----FRPTHVSHQAA   75 (311)
T ss_dssp             EEEEETTTSHHHHHHHHHH-HTTTCEEEEECCCSSCCGGGSC-TTCCEECCCTTCHHHHHHHHHH----HCCSEEEECCS
T ss_pred             EEEEEeCCcHHHHHHHHHH-HHCCCEEEEEECCCcCchhhcc-cCeEEEECCCCCHHHHHHHHHh----cCCCEEEECcc
Confidence            6899999999999988877 457999999987433 222111 122221 233331233333322    26899999887


Q ss_pred             C
Q psy1959         242 G  242 (296)
Q Consensus       242 ~  242 (296)
                      .
T Consensus        76 ~   76 (311)
T 2p5y_A           76 Q   76 (311)
T ss_dssp             C
T ss_pred             c
Confidence            5

>3pwz_A Shikimate dehydrogenase 3; alpha-beta, oxidoreductase; 1.71A {Pseudomonas putida}

Probab=94.08  E-value=0.16  Score=43.92  Aligned_cols=69  Identities=17%  Similarity=0.164  Sum_probs=47.9

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCC-EEEEEeCCcchHHHHH-hcCC--cEEEEcCCchhHHHHHHHHhCCCcccEE
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKA-KVIGVCNSEDKTDLIR-QKGA--WAALTFTNEKSLVNKVLEVSGGKYANVV  236 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~-~Vi~~~~~~~~~~~~~-~~g~--~~~~~~~~~~~~~~~i~~~~~~~g~d~v  236 (296)
                      .+++++|+|+ |+.|.+++..+ ...|+ +|+++.|+.++.+.+. +++.  .....+.+   +       .. ..+|++
T Consensus       119 ~~k~~lvlGa-Gg~~~aia~~L-~~~G~~~v~i~~R~~~~a~~la~~~~~~~~~~~~~~~---l-------~~-~~~Div  185 (272)
T 3pwz_A          119 RNRRVLLLGA-GGAVRGALLPF-LQAGPSELVIANRDMAKALALRNELDHSRLRISRYEA---L-------EG-QSFDIV  185 (272)
T ss_dssp             TTSEEEEECC-SHHHHHHHHHH-HHTCCSEEEEECSCHHHHHHHHHHHCCTTEEEECSGG---G-------TT-CCCSEE
T ss_pred             cCCEEEEECc-cHHHHHHHHHH-HHcCCCEEEEEeCCHHHHHHHHHHhccCCeeEeeHHH---h-------cc-cCCCEE
Confidence            6889999997 99999988777 44786 9999999988876654 3332  12222211   1       11 478999


Q ss_pred             EECCCC
Q psy1959         237 FEAVGG  242 (296)
Q Consensus       237 ld~~g~  242 (296)
                      ++++..
T Consensus       186 InaTp~  191 (272)
T 3pwz_A          186 VNATSA  191 (272)
T ss_dssp             EECSSG
T ss_pred             EECCCC
Confidence            998763

>1d7o_A Enoyl-[acyl-carrier protein] reductase (NADH) PRE; triclosan, enoyl reductase, oxidoreductase; HET: NAD TCL; 1.90A {Brassica napus} SCOP: c.2.1.2 PDB: 1eno_A* 1enp_A* 1cwu_A*

Probab=94.05  E-value=0.14  Score=44.36  Aligned_cols=35  Identities=11%  Similarity=0.129  Sum_probs=29.1

Q ss_pred             CCcEEEEEcCC--CcHHHHHHHHHHHhCCCEEEEEeCC
Q psy1959         161 EKQTVLVTAAG--GGLGLAAVDMATKIYKAKVIGVCNS  196 (296)
Q Consensus       161 ~g~~vlI~Ga~--g~vG~aa~~la~~~~g~~Vi~~~~~  196 (296)
                      .+++++|+|++  +++|.++++.+ ...|++|++++++
T Consensus         7 ~~k~~lVTGas~~~GIG~aia~~l-a~~G~~V~~~~r~   43 (297)
T 1d7o_A            7 RGKRAFIAGIADDNGYGWAVAKSL-AAAGAEILVGTWV   43 (297)
T ss_dssp             TTCEEEEECCSSSSSHHHHHHHHH-HHTTCEEEEEEEH
T ss_pred             CCCEEEEECCCCCCChHHHHHHHH-HHCCCeEEEeecc
Confidence            57899999998  99999988776 4479999998753

>1eq2_A ADP-L-glycero-D-mannoheptose 6-epimerase; N-terminal domain rossmann fold, C-terminal mixed alpha/beta domain; HET: NAP ADQ; 2.00A {Escherichia coli} SCOP: c.2.1.2

Probab=94.04  E-value=0.097  Score=45.26  Aligned_cols=72  Identities=17%  Similarity=0.170  Sum_probs=46.1

Q ss_pred             EEEEEcCCCcHHHHHHHHHHHhCC-CEEEEEeCCcchH--HHHHhcCCcEEEEcCCchhHHHHHHHHhCC---CcccEEE
Q psy1959         164 TVLVTAAGGGLGLAAVDMATKIYK-AKVIGVCNSEDKT--DLIRQKGAWAALTFTNEKSLVNKVLEVSGG---KYANVVF  237 (296)
Q Consensus       164 ~vlI~Ga~g~vG~aa~~la~~~~g-~~Vi~~~~~~~~~--~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~---~g~d~vl  237 (296)
                      +|+|+|++|.+|...++.+ ...| .+|+++++++.+.  ..+....  ...+..+    .+.+.++..+   .++|++|
T Consensus         1 ~vlVtGatG~iG~~l~~~L-~~~g~~~V~~~~r~~~~~~~~~~~~~~--~~~d~~~----~~~~~~~~~~~~~~~~d~vi   73 (310)
T 1eq2_A            1 MIIVTGGAGFIGSNIVKAL-NDKGITDILVVDNLKDGTKFVNLVDLN--IADYMDK----EDFLIQIMAGEEFGDVEAIF   73 (310)
T ss_dssp             CEEEETTTSHHHHHHHHHH-HTTTCCCEEEEECCSSGGGGHHHHTSC--CSEEEEH----HHHHHHHHTTCCCSSCCEEE
T ss_pred             CEEEEcCccHHHHHHHHHH-HHCCCcEEEEEccCCCCchhhhcCcce--ecccccc----HHHHHHHHhccccCCCcEEE
Confidence            4899999999999988887 4468 8999999876542  3333222  1112222    2234444332   2699999


Q ss_pred             ECCCC
Q psy1959         238 EAVGG  242 (296)
Q Consensus       238 d~~g~  242 (296)
                      .+.+.
T Consensus        74 ~~a~~   78 (310)
T 1eq2_A           74 HEGAC   78 (310)
T ss_dssp             ECCSC
T ss_pred             ECccc
Confidence            99874

>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A*

Probab=94.02  E-value=0.48  Score=40.18  Aligned_cols=122  Identities=16%  Similarity=0.107  Sum_probs=70.2

Q ss_pred             CceEECCCCCCHHHHhhhccHHHHHHHHHHHHcCCCCCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHH
Q psy1959         125 NDVFKIPEKMTFEHAASLADSYSTAQIVFSRHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIR  204 (296)
Q Consensus       125 ~~~~~iP~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~  204 (296)
                      ...+.+++++.+.....  .........+.+.  ++++++||-.|+ |. |..++.++ + .|++|++++.++...+.++
T Consensus        88 ~~~~~l~p~~~fgtg~~--~tt~~~~~~l~~~--~~~~~~VLDiGc-G~-G~l~~~la-~-~g~~v~gvDi~~~~v~~a~  159 (254)
T 2nxc_A           88 EIPLVIEPGMAFGTGHH--ETTRLALKALARH--LRPGDKVLDLGT-GS-GVLAIAAE-K-LGGKALGVDIDPMVLPQAE  159 (254)
T ss_dssp             SEEEECCCC-----CCS--HHHHHHHHHHHHH--CCTTCEEEEETC-TT-SHHHHHHH-H-TTCEEEEEESCGGGHHHHH
T ss_pred             ceEEEECCCccccCCCC--HHHHHHHHHHHHh--cCCCCEEEEecC-CC-cHHHHHHH-H-hCCeEEEEECCHHHHHHHH
Confidence            34566777665443321  1111122334333  578999999997 44 77777777 4 4779999999999887776


Q ss_pred             h----cCCcEEEEcCCchhHHHHHHHHhCCCcccEEEECCCC----ccHHHHHHHhhccCceEEee
Q psy1959         205 Q----KGAWAALTFTNEKSLVNKVLEVSGGKYANVVFEAVGG----EDKTDLIRQKGAWAALTFTN  262 (296)
Q Consensus       205 ~----~g~~~~~~~~~~~~~~~~i~~~~~~~g~d~vld~~g~----~~~~~~~~~lg~~~g~~~~~  262 (296)
                      +    .+....+..   .+..+.   . ....+|+++.+.-.    ..+..+.+.| +++|.+.+.
T Consensus       160 ~n~~~~~~~v~~~~---~d~~~~---~-~~~~fD~Vv~n~~~~~~~~~l~~~~~~L-kpgG~lils  217 (254)
T 2nxc_A          160 ANAKRNGVRPRFLE---GSLEAA---L-PFGPFDLLVANLYAELHAALAPRYREAL-VPGGRALLT  217 (254)
T ss_dssp             HHHHHTTCCCEEEE---SCHHHH---G-GGCCEEEEEEECCHHHHHHHHHHHHHHE-EEEEEEEEE
T ss_pred             HHHHHcCCcEEEEE---CChhhc---C-cCCCCCEEEECCcHHHHHHHHHHHHHHc-CCCCEEEEE
Confidence            5    344311111   222222   1 13479999976532    2455666777 888888664

>2ptg_A Enoyl-acyl carrier reductase; apicomplexa, enoyl (acyl-carrier-P reductase, oxidoreductase; 2.60A {Eimeria tenella}

Probab=93.98  E-value=0.15  Score=44.72  Aligned_cols=35  Identities=20%  Similarity=0.255  Sum_probs=29.2

Q ss_pred             CCcEEEEEcC--CCcHHHHHHHHHHHhCCCEEEEEeCC
Q psy1959         161 EKQTVLVTAA--GGGLGLAAVDMATKIYKAKVIGVCNS  196 (296)
Q Consensus       161 ~g~~vlI~Ga--~g~vG~aa~~la~~~~g~~Vi~~~~~  196 (296)
                      .+++++|+|+  ++++|.++++.+ ...|++|++++++
T Consensus         8 ~~k~~lVTGa~~s~GIG~aia~~l-a~~G~~Vv~~~r~   44 (319)
T 2ptg_A            8 RGKTAFVAGVADSNGYGWAICKLL-RAAGARVLVGTWP   44 (319)
T ss_dssp             TTCEEEEECCCCTTSHHHHHHHHH-HHTTCEEEEEECH
T ss_pred             CCCEEEEeCCCCCCcHHHHHHHHH-HHCCCEEEEEecc
Confidence            5789999998  899999988777 4479999998753

>3t4e_A Quinate/shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 1.95A {Salmonella enterica subsp} PDB: 1npd_A* 1o9b_A* 1vi2_A*

Probab=93.97  E-value=0.6  Score=41.17  Aligned_cols=74  Identities=14%  Similarity=0.091  Sum_probs=46.7

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCC-EEEEEeCC---cchHHHHHh-c----CCc-EEEEcCCchhHHHHHHHHhCC
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKA-KVIGVCNS---EDKTDLIRQ-K----GAW-AALTFTNEKSLVNKVLEVSGG  230 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~-~Vi~~~~~---~~~~~~~~~-~----g~~-~~~~~~~~~~~~~~i~~~~~~  230 (296)
                      .+++++|+|+ |+.|.+++..+ ...|+ +|+++.|+   .+|.+.+.+ +    +.. ..+...+ .++   +.+..  
T Consensus       147 ~gk~~lVlGA-GGaaraia~~L-~~~G~~~v~v~nRt~~~~~~a~~la~~~~~~~~~~v~~~~~~~-l~~---~~~~l--  218 (312)
T 3t4e_A          147 RGKTMVLLGA-GGAATAIGAQA-AIEGIKEIKLFNRKDDFFEKAVAFAKRVNENTDCVVTVTDLAD-QHA---FTEAL--  218 (312)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHH-HHTTCSEEEEEECSSTHHHHHHHHHHHHHHHSSCEEEEEETTC-HHH---HHHHH--
T ss_pred             CCCEEEEECc-CHHHHHHHHHH-HHcCCCEEEEEECCCchHHHHHHHHHHhhhccCcceEEechHh-hhh---hHhhc--
Confidence            5889999997 99999988877 45788 89999999   555544332 2    221 2233322 111   11111  


Q ss_pred             CcccEEEECCCC
Q psy1959         231 KYANVVFEAVGG  242 (296)
Q Consensus       231 ~g~d~vld~~g~  242 (296)
                      ..+|++|+|+..
T Consensus       219 ~~~DiIINaTp~  230 (312)
T 3t4e_A          219 ASADILTNGTKV  230 (312)
T ss_dssp             HHCSEEEECSST
T ss_pred             cCceEEEECCcC
Confidence            257999998763

>1oc2_A DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnose; HET: TDX NAD; 1.5A {Streptococcus suis} SCOP: c.2.1.2 PDB: 1ker_A* 1ket_A* 1kep_A*

Probab=93.95  E-value=0.1  Score=46.05  Aligned_cols=74  Identities=12%  Similarity=0.130  Sum_probs=46.1

Q ss_pred             cEEEEEcCCCcHHHHHHHHHHHhC-CCEEEEEeCCcc--hHHHHHhc-CCc-EEE--EcCCchhHHHHHHHHhCCCcccE
Q psy1959         163 QTVLVTAAGGGLGLAAVDMATKIY-KAKVIGVCNSED--KTDLIRQK-GAW-AAL--TFTNEKSLVNKVLEVSGGKYANV  235 (296)
Q Consensus       163 ~~vlI~Ga~g~vG~aa~~la~~~~-g~~Vi~~~~~~~--~~~~~~~~-g~~-~~~--~~~~~~~~~~~i~~~~~~~g~d~  235 (296)
                      .+|+|+|++|.+|..+++.+.+.. |.+|++++++..  ..+.+.++ +.. ..+  +..+    .+.+.++..  ++|+
T Consensus         5 ~~vlVTGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~d----~~~~~~~~~--~~d~   78 (348)
T 1oc2_A            5 KNIIVTGGAGFIGSNFVHYVYNNHPDVHVTVLDKLTYAGNKANLEAILGDRVELVVGDIAD----AELVDKLAA--KADA   78 (348)
T ss_dssp             SEEEEETTTSHHHHHHHHHHHHHCTTCEEEEEECCCTTCCGGGTGGGCSSSEEEEECCTTC----HHHHHHHHT--TCSE
T ss_pred             cEEEEeCCccHHHHHHHHHHHHhCCCCEEEEEeCCCCCCChhHHhhhccCCeEEEECCCCC----HHHHHHHhh--cCCE
Confidence            579999999999999887773422 789999998542  22222222 111 122  2222    234444443  5799


Q ss_pred             EEECCCC
Q psy1959         236 VFEAVGG  242 (296)
Q Consensus       236 vld~~g~  242 (296)
                      ||.+.+.
T Consensus        79 vih~A~~   85 (348)
T 1oc2_A           79 IVHYAAE   85 (348)
T ss_dssp             EEECCSC
T ss_pred             EEECCcc
Confidence            9999985

>1z7e_A Protein aRNA; rossmann fold, OB-like fold, hydrolase; HET: ATP UGA; 3.00A {Escherichia coli} SCOP: b.46.1.1 c.2.1.2 c.65.1.1

Probab=93.91  E-value=0.088  Score=51.32  Aligned_cols=77  Identities=14%  Similarity=0.105  Sum_probs=48.2

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCcEEE--EcCCchhHHHHHHHHhCCCcccEEEE
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAAL--TFTNEKSLVNKVLEVSGGKYANVVFE  238 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~i~~~~~~~g~d~vld  238 (296)
                      .+.+|+|+|++|.+|...++.+.+..|.+|++++++.++...+.+......+  +..+..+   .+.+..  +++|+||.
T Consensus       314 ~~~~VLVTGatG~IG~~l~~~Ll~~~g~~V~~~~r~~~~~~~~~~~~~v~~v~~Dl~d~~~---~~~~~~--~~~D~Vih  388 (660)
T 1z7e_A          314 RRTRVLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAISRFLNHPHFHFVEGDISIHSE---WIEYHV--KKCDVVLP  388 (660)
T ss_dssp             CCEEEEEETTTSHHHHHHHHHHHHSSSEEEEEEESCCTTTGGGTTCTTEEEEECCTTTCHH---HHHHHH--HHCSEEEE
T ss_pred             cCceEEEEcCCcHHHHHHHHHHHhcCCCEEEEEEcCchhhhhhccCCceEEEECCCCCcHH---HHHHhh--cCCCEEEE
Confidence            5678999999999999988777332378999999987664432221111222  2222122   233222  16899999


Q ss_pred             CCCC
Q psy1959         239 AVGG  242 (296)
Q Consensus       239 ~~g~  242 (296)
                      +.+.
T Consensus       389 ~Aa~  392 (660)
T 1z7e_A          389 LVAI  392 (660)
T ss_dssp             CCCC
T ss_pred             Ccee
Confidence            8874

>2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum}

Probab=93.85  E-value=0.27  Score=40.58  Aligned_cols=100  Identities=16%  Similarity=0.062  Sum_probs=66.1

Q ss_pred             CCCCCcEEEEEcCCCcHHHHHHHHHHHhCC------CEEEEEeCCcchHHHHHhc----C-----C-cEEEEcCCchh-H
Q psy1959         158 KLKEKQTVLVTAAGGGLGLAAVDMATKIYK------AKVIGVCNSEDKTDLIRQK----G-----A-WAALTFTNEKS-L  220 (296)
Q Consensus       158 ~~~~g~~vlI~Ga~g~vG~aa~~la~~~~g------~~Vi~~~~~~~~~~~~~~~----g-----~-~~~~~~~~~~~-~  220 (296)
                      .++++++||-.|+ |. |..+..++ +..+      .+|+.++.+++..+.+++.    +     . ...+...+..+ +
T Consensus        77 ~~~~~~~VLdiG~-G~-G~~~~~la-~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~  153 (227)
T 2pbf_A           77 VLKPGSRAIDVGS-GS-GYLTVCMA-IKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPELLKIDNFKIIHKNIYQVN  153 (227)
T ss_dssp             TSCTTCEEEEESC-TT-SHHHHHHH-HHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGSSTTEEEEECCGGGCC
T ss_pred             hCCCCCEEEEECC-CC-CHHHHHHH-HHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHcCccccccCCEEEEECChHhcc
Confidence            5789999999996 54 88888888 4444      5999999999887777653    3     1 12222222111 1


Q ss_pred             HHHHHHHhCCCcccEEEECCCC-ccHHHHHHHhhccCceEEeecc
Q psy1959         221 VNKVLEVSGGKYANVVFEAVGG-EDKTDLIRQKGAWAALTFTNEK  264 (296)
Q Consensus       221 ~~~i~~~~~~~g~d~vld~~g~-~~~~~~~~~lg~~~g~~~~~~~  264 (296)
                      .+....   ...+|+++..... ..+..+.+.| +++|.+.+...
T Consensus       154 ~~~~~~---~~~fD~I~~~~~~~~~~~~~~~~L-kpgG~lv~~~~  194 (227)
T 2pbf_A          154 EEEKKE---LGLFDAIHVGASASELPEILVDLL-AENGKLIIPIE  194 (227)
T ss_dssp             HHHHHH---HCCEEEEEECSBBSSCCHHHHHHE-EEEEEEEEEEE
T ss_pred             cccCcc---CCCcCEEEECCchHHHHHHHHHhc-CCCcEEEEEEc
Confidence            100011   2369999987776 5678888899 99998866543

>1r0k_A 1-deoxy-D-xylulose 5-phosphate reductoisomerase; NADPH dependent, fosmidomycin, non- mevalonate pathway, oxidoreductase; 1.91A {Zymomonas mobilis} SCOP: a.69.3.1 c.2.1.3 d.81.1.3 PDB: 1r0l_A*

Probab=93.79  E-value=0.59  Score=42.47  Aligned_cols=95  Identities=18%  Similarity=0.203  Sum_probs=60.8

Q ss_pred             cEEEEEcCCCcHHHHHHHHHHHhCC-CEEEEE--eCCcchH-HHHHhcCCcEEEEcCCc--hhH--------------HH
Q psy1959         163 QTVLVTAAGGGLGLAAVDMATKIYK-AKVIGV--CNSEDKT-DLIRQKGAWAALTFTNE--KSL--------------VN  222 (296)
Q Consensus       163 ~~vlI~Ga~g~vG~aa~~la~~~~g-~~Vi~~--~~~~~~~-~~~~~~g~~~~~~~~~~--~~~--------------~~  222 (296)
                      .+|.|+|++|.+|..++...++..+ ++|+++  .++.+++ +.++++++..+...+..  .++              .+
T Consensus         5 ~rI~ILGsTGSIG~~~l~vi~~~p~~~~v~al~ag~ni~~l~~~~~~f~~~~v~v~d~~~~~~l~~~l~~~~~~v~~g~~   84 (388)
T 1r0k_A            5 RTVTVLGATGSIGHSTLDLIERNLDRYQVIALTANRNVKDLADAAKRTNAKRAVIADPSLYNDLKEALAGSSVEAAAGAD   84 (388)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHTGGGEEEEEEEESSCHHHHHHHHHHTTCSEEEESCGGGHHHHHHHTTTCSSEEEESHH
T ss_pred             eEEEEECCCeEeHHHHHHHHHhCcCcEEEEEEEcCCCHHHHHHHHHHcCCcEEEEcChHHHHHHHHHhccCCcEEEeCcc
Confidence            5799999999999999988855444 677655  3344433 34566787665544320  111              12


Q ss_pred             HHHHHhCCCcccEEEECCCC-ccHHHHHHHhhccCceE
Q psy1959         223 KVLEVSGGKYANVVFEAVGG-EDKTDLIRQKGAWAALT  259 (296)
Q Consensus       223 ~i~~~~~~~g~d~vld~~g~-~~~~~~~~~lg~~~g~~  259 (296)
                      .+.++.... +|+|+++..+ ..+..++.++ +.|-.+
T Consensus        85 ~~~el~~~~-iDvVV~ai~G~aGl~ptlaAi-~aGK~V  120 (388)
T 1r0k_A           85 ALVEAAMMG-ADWTMAAIIGCAGLKATLAAI-RKGKTV  120 (388)
T ss_dssp             HHHHHHTSC-CSEEEECCCSGGGHHHHHHHH-HTTSEE
T ss_pred             HHHHHHcCC-CCEEEEeCCCHHHHHHHHHHH-HCCCEE
Confidence            223444444 8999999955 6778888888 555544

>1r6d_A TDP-glucose-4,6-dehydratase; rossmann fold, short-chain dehydrogenase/reductase, lyase; HET: NAD DAU; 1.35A {Streptomyces venezuelae} SCOP: c.2.1.2 PDB: 1r66_A*

Probab=93.75  E-value=0.2  Score=43.90  Aligned_cols=72  Identities=11%  Similarity=0.047  Sum_probs=45.3

Q ss_pred             EEEEEcCCCcHHHHHHHHHHHhC---C---CEEEEEeCCcc--hHHHHHhc--CCc-EEE--EcCCchhHHHHHHHHhCC
Q psy1959         164 TVLVTAAGGGLGLAAVDMATKIY---K---AKVIGVCNSED--KTDLIRQK--GAW-AAL--TFTNEKSLVNKVLEVSGG  230 (296)
Q Consensus       164 ~vlI~Ga~g~vG~aa~~la~~~~---g---~~Vi~~~~~~~--~~~~~~~~--g~~-~~~--~~~~~~~~~~~i~~~~~~  230 (296)
                      +|+|+|++|.+|..+++.+.+ .   |   .+|+++++...  +.+.+.++  +.. ..+  +..+    .+.+.++.  
T Consensus         2 ~vlVTGatG~iG~~l~~~L~~-~~~~g~~~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~d----~~~~~~~~--   74 (337)
T 1r6d_A            2 RLLVTGGAGFIGSHFVRQLLA-GAYPDVPADEVIVLDSLTYAGNRANLAPVDADPRLRFVHGDIRD----AGLLAREL--   74 (337)
T ss_dssp             EEEEETTTSHHHHHHHHHHHH-TSCTTSCCSEEEEEECCCTTCCGGGGGGGTTCTTEEEEECCTTC----HHHHHHHT--
T ss_pred             eEEEECCccHHHHHHHHHHHh-hhcCCCCceEEEEEECCCccCchhhhhhcccCCCeEEEEcCCCC----HHHHHHHh--
Confidence            689999999999998887733 3   7   89999987542  22222222  111 222  2222    23444444  


Q ss_pred             CcccEEEECCCC
Q psy1959         231 KYANVVFEAVGG  242 (296)
Q Consensus       231 ~g~d~vld~~g~  242 (296)
                      .++|++|.+.+.
T Consensus        75 ~~~d~Vih~A~~   86 (337)
T 1r6d_A           75 RGVDAIVHFAAE   86 (337)
T ss_dssp             TTCCEEEECCSC
T ss_pred             cCCCEEEECCCc
Confidence            479999999985

>4f6c_A AUSA reductase domain protein; thioester reductase, oxidoreductase; 2.81A {Staphylococcus aureus}

Probab=93.72  E-value=0.092  Score=48.09  Aligned_cols=38  Identities=18%  Similarity=0.295  Sum_probs=33.0

Q ss_pred             CCCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcc
Q psy1959         160 KEKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSED  198 (296)
Q Consensus       160 ~~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~  198 (296)
                      .++.+|+|+|++|.+|..++..+ ...|.+|++++++++
T Consensus        67 ~~~~~vlVTGatG~iG~~l~~~L-~~~g~~V~~~~R~~~  104 (427)
T 4f6c_A           67 RPLGNTLLTGATGFLGAYLIEAL-QGYSHRIYCFIRADN  104 (427)
T ss_dssp             CCCEEEEEECTTSHHHHHHHHHH-TTTEEEEEEEEECSS
T ss_pred             CCCCEEEEecCCcHHHHHHHHHH-HcCCCEEEEEECCCC
Confidence            45679999999999999988887 557899999999877

>2uv8_A Fatty acid synthase subunit alpha (FAS2); fatty acid biosynthesis, malonyl/palmitoyl transferase, phosphopantetheine, transferase; HET: GVL FMN; 3.10A {Saccharomyces cerevisiae} PDB: 2vkz_A* 3hmj_A*

Probab=93.71  E-value=0.25  Score=53.41  Aligned_cols=81  Identities=14%  Similarity=0.093  Sum_probs=52.0

Q ss_pred             CCcEEEEEcCCCc-HHHHHHHHHHHhCCCEEEEE-eCCcchHHHH-----Hhc---CCcEE---EEcCCchhHHHHHHHH
Q psy1959         161 EKQTVLVTAAGGG-LGLAAVDMATKIYKAKVIGV-CNSEDKTDLI-----RQK---GAWAA---LTFTNEKSLVNKVLEV  227 (296)
Q Consensus       161 ~g~~vlI~Ga~g~-vG~aa~~la~~~~g~~Vi~~-~~~~~~~~~~-----~~~---g~~~~---~~~~~~~~~~~~i~~~  227 (296)
                      .|++++|+|++++ +|.++++.+ ...|++|+++ .+++++.+.+     +++   |....   .+..+..+....+.++
T Consensus       674 ~gKvaLVTGASsGgIG~aIA~~L-a~~GA~Vvl~~~R~~~~l~~~~~eL~~~~~~~g~~v~~v~~DVsd~~sV~alv~~i  752 (1887)
T 2uv8_A          674 KDKYVLITGAGKGSIGAEVLQGL-LQGGAKVVVTTSRFSKQVTDYYQSIYAKYGAKGSTLIVVPFNQGSKQDVEALIEFI  752 (1887)
T ss_dssp             TTCEEEEESCCSSSHHHHHHHHH-HHTTCEEEEEESSCCHHHHHHHHHHHHHHCCTTCEEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCcHHHHHHHHHH-HHCCCEEEEEecCCHHHHHHHHHHHHHHhhcCCCeEEEEEecCCCHHHHHHHHHHH
Confidence            5889999999998 999988777 4579999998 4655554322     222   33322   2333423444444444


Q ss_pred             hCC-----C--cccEEEECCCC
Q psy1959         228 SGG-----K--YANVVFEAVGG  242 (296)
Q Consensus       228 ~~~-----~--g~d~vld~~g~  242 (296)
                      ...     .  .+|++|++.|.
T Consensus       753 ~~~~~~~G~G~~LDiLVNNAGi  774 (1887)
T 2uv8_A          753 YDTEKNGGLGWDLDAIIPFAAI  774 (1887)
T ss_dssp             HSCTTTTSCCCCCSEEEECCCC
T ss_pred             HHhccccccCCCCeEEEECCCc
Confidence            332     2  49999999984

>1leh_A Leucine dehydrogenase; oxidoreductase; 2.20A {Lysinibacillus sphaericus} SCOP: c.2.1.7 c.58.1.1

Probab=93.65  E-value=0.16  Score=45.96  Aligned_cols=47  Identities=19%  Similarity=0.138  Sum_probs=38.7

Q ss_pred             CCCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHH-HhcCC
Q psy1959         160 KEKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLI-RQKGA  208 (296)
Q Consensus       160 ~~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~-~~~g~  208 (296)
                      -+|++|+|.|. |.+|..+++.+ ...|++|++.+++.++.+.+ +++++
T Consensus       171 L~GktV~V~G~-G~VG~~~A~~L-~~~GakVvv~D~~~~~l~~~a~~~ga  218 (364)
T 1leh_A          171 LEGLAVSVQGL-GNVAKALCKKL-NTEGAKLVVTDVNKAAVSAAVAEEGA  218 (364)
T ss_dssp             CTTCEEEEECC-SHHHHHHHHHH-HHTTCEEEEECSCHHHHHHHHHHHCC
T ss_pred             CCcCEEEEECc-hHHHHHHHHHH-HHCCCEEEEEcCCHHHHHHHHHHcCC
Confidence            37899999997 99999999999 56899999999888877644 34454

>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP}

Probab=93.59  E-value=0.13  Score=42.98  Aligned_cols=97  Identities=13%  Similarity=0.134  Sum_probs=63.7

Q ss_pred             CCCCcEEEEEcCCCcHHHHHHHHHHHhC--CCEEEEEeCCcchHHHHHhc----CCc--EEEEcCCchhHHHHHHHHhC-
Q psy1959         159 LKEKQTVLVTAAGGGLGLAAVDMATKIY--KAKVIGVCNSEDKTDLIRQK----GAW--AALTFTNEKSLVNKVLEVSG-  229 (296)
Q Consensus       159 ~~~g~~vlI~Ga~g~vG~aa~~la~~~~--g~~Vi~~~~~~~~~~~~~~~----g~~--~~~~~~~~~~~~~~i~~~~~-  229 (296)
                      ..++++||-.|+ | .|..+..++ +..  +.+|+.++.+++..+.+++.    |..  ..+..   .+..+.+.+... 
T Consensus        70 ~~~~~~vLdiG~-G-~G~~~~~la-~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~---~d~~~~l~~l~~~  143 (232)
T 3cbg_A           70 LTGAKQVLEIGV-F-RGYSALAMA-LQLPPDGQIIACDQDPNATAIAKKYWQKAGVAEKISLRL---GPALATLEQLTQG  143 (232)
T ss_dssp             HHTCCEEEEECC-T-TSHHHHHHH-TTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEE---SCHHHHHHHHHTS
T ss_pred             hcCCCEEEEecC-C-CCHHHHHHH-HhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEE---cCHHHHHHHHHhc
Confidence            446789999985 4 788889999 444  57999999999888777643    442  22222   233333444432 


Q ss_pred             C--CcccEEEECCCC----ccHHHHHHHhhccCceEEee
Q psy1959         230 G--KYANVVFEAVGG----EDKTDLIRQKGAWAALTFTN  262 (296)
Q Consensus       230 ~--~g~d~vld~~g~----~~~~~~~~~lg~~~g~~~~~  262 (296)
                      .  ..+|+++-....    ..+..+++.| +++|.+.+.
T Consensus       144 ~~~~~fD~V~~d~~~~~~~~~l~~~~~~L-kpgG~lv~~  181 (232)
T 3cbg_A          144 KPLPEFDLIFIDADKRNYPRYYEIGLNLL-RRGGLMVID  181 (232)
T ss_dssp             SSCCCEEEEEECSCGGGHHHHHHHHHHTE-EEEEEEEEE
T ss_pred             CCCCCcCEEEECCCHHHHHHHHHHHHHHc-CCCeEEEEe
Confidence            1  479999854432    2467778888 888888664

>2uv9_A Fatty acid synthase alpha subunits; fungal, dehydratase, enoyl reductase, ketoacyl synthase, ketoacyl reductase; 3.1A {Thermomyces lanuginosus} PDB: 2uvb_A*

Probab=93.55  E-value=0.28  Score=52.99  Aligned_cols=81  Identities=17%  Similarity=0.106  Sum_probs=51.9

Q ss_pred             CCcEEEEEcCCCc-HHHHHHHHHHHhCCCEEEEEe-CCcchHHH----H-Hhc---CCcEE---EEcCCchhHHHHHHHH
Q psy1959         161 EKQTVLVTAAGGG-LGLAAVDMATKIYKAKVIGVC-NSEDKTDL----I-RQK---GAWAA---LTFTNEKSLVNKVLEV  227 (296)
Q Consensus       161 ~g~~vlI~Ga~g~-vG~aa~~la~~~~g~~Vi~~~-~~~~~~~~----~-~~~---g~~~~---~~~~~~~~~~~~i~~~  227 (296)
                      .|+++||+|++++ +|.++++.+ ...|++|++++ ++.++.+.    + .++   |....   .+..+..+....+.++
T Consensus       651 ~gKvaLVTGASgGgIG~aIAr~L-A~~GA~VVl~~~R~~~~l~~~a~eL~~el~~~G~~v~~v~~DVsd~esV~alv~~i  729 (1878)
T 2uv9_A          651 QGKHALMTGAGAGSIGAEVLQGL-LSGGAKVIVTTSRFSRQVTEYYQGIYARCGARGSQLVVVPFNQGSKQDVEALVNYI  729 (1878)
T ss_dssp             TTCEEEEESCCTTSHHHHHHHHH-HHTTCEEEEEESSCCHHHHHHHHHHHHHHCCTTCEEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCcHHHHHHHHHH-HHCCCEEEEEecCChHHHHHHHHHHHHHhhccCCeEEEEEcCCCCHHHHHHHHHHH
Confidence            5789999999998 999988777 45799999885 54444321    2 232   43322   2333424444444444


Q ss_pred             hCC---C--cccEEEECCCC
Q psy1959         228 SGG---K--YANVVFEAVGG  242 (296)
Q Consensus       228 ~~~---~--g~d~vld~~g~  242 (296)
                      ...   .  .+|++|++.|.
T Consensus       730 ~~~~~~~G~~IDiLVnNAGi  749 (1878)
T 2uv9_A          730 YDTKNGLGWDLDYVVPFAAI  749 (1878)
T ss_dssp             HCSSSSCCCCCSEEEECCCC
T ss_pred             HHhhcccCCCCcEEEeCccc
Confidence            433   2  49999999984

>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}

Probab=93.54  E-value=0.3  Score=40.31  Aligned_cols=77  Identities=8%  Similarity=-0.019  Sum_probs=53.8

Q ss_pred             EEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHh-cCCcEEEEcCCchhHHHHHHHHhCCCcccEEEECCCC
Q psy1959         164 TVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQ-KGAWAALTFTNEKSLVNKVLEVSGGKYANVVFEAVGG  242 (296)
Q Consensus       164 ~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~~~g~d~vld~~g~  242 (296)
                      +|+|.|+ |.+|...++.+ ...|.+|+++++++++.+.+.+ .+.. ++..+. .+ .+.+.+. +-..+|+++-+.+.
T Consensus         2 ~iiIiG~-G~~G~~la~~L-~~~g~~v~vid~~~~~~~~l~~~~~~~-~i~gd~-~~-~~~l~~a-~i~~ad~vi~~~~~   75 (218)
T 3l4b_C            2 KVIIIGG-ETTAYYLARSM-LSRKYGVVIINKDRELCEEFAKKLKAT-IIHGDG-SH-KEILRDA-EVSKNDVVVILTPR   75 (218)
T ss_dssp             CEEEECC-HHHHHHHHHHH-HHTTCCEEEEESCHHHHHHHHHHSSSE-EEESCT-TS-HHHHHHH-TCCTTCEEEECCSC
T ss_pred             EEEEECC-CHHHHHHHHHH-HhCCCeEEEEECCHHHHHHHHHHcCCe-EEEcCC-CC-HHHHHhc-CcccCCEEEEecCC
Confidence            4889997 99999988888 4579999999999999887654 5653 333322 11 2233333 34579999999998


Q ss_pred             ccHH
Q psy1959         243 EDKT  246 (296)
Q Consensus       243 ~~~~  246 (296)
                      +..+
T Consensus        76 d~~n   79 (218)
T 3l4b_C           76 DEVN   79 (218)
T ss_dssp             HHHH
T ss_pred             cHHH
Confidence            5433

>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A*

Probab=93.44  E-value=0.35  Score=42.62  Aligned_cols=44  Identities=18%  Similarity=0.157  Sum_probs=37.9

Q ss_pred             cEEEEEcCCCcHHHHHHHHHHHhCCC--EEEEEeCCcchHHHHHhcCC
Q psy1959         163 QTVLVTAAGGGLGLAAVDMATKIYKA--KVIGVCNSEDKTDLIRQKGA  208 (296)
Q Consensus       163 ~~vlI~Ga~g~vG~aa~~la~~~~g~--~Vi~~~~~~~~~~~~~~~g~  208 (296)
                      .+|.|+|. |.+|.+.++.+ +..|.  +|++.++++++.+.+++.|.
T Consensus        34 ~kI~IIG~-G~mG~slA~~l-~~~G~~~~V~~~dr~~~~~~~a~~~G~   79 (314)
T 3ggo_A           34 QNVLIVGV-GFMGGSFAKSL-RRSGFKGKIYGYDINPESISKAVDLGI   79 (314)
T ss_dssp             SEEEEESC-SHHHHHHHHHH-HHTTCCSEEEEECSCHHHHHHHHHTTS
T ss_pred             CEEEEEee-CHHHHHHHHHH-HhCCCCCEEEEEECCHHHHHHHHHCCC
Confidence            68999996 99999988887 44688  99999999999888888775

>3ko8_A NAD-dependent epimerase/dehydratase; isomerase, UDP-galactose 4-epimerase; HET: NAD; 1.80A {Pyrobaculum calidifontis} SCOP: c.2.1.0 PDB: 3icp_A* 3aw9_A*

Probab=93.43  E-value=0.068  Score=46.43  Aligned_cols=70  Identities=20%  Similarity=0.073  Sum_probs=45.4

Q ss_pred             EEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCcEE-EEcCCchhHHHHHHHHhCCCcccEEEECCCC
Q psy1959         164 TVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAA-LTFTNEKSLVNKVLEVSGGKYANVVFEAVGG  242 (296)
Q Consensus       164 ~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~i~~~~~~~g~d~vld~~g~  242 (296)
                      +|+|+|++|.+|...++.+ ...|.+|++++++.++.......+...+ .+..+ .+    +.+...  + |+++++.+.
T Consensus         2 ~vlVtGatG~iG~~l~~~L-~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~Dl~d-~~----~~~~~~--~-d~vih~A~~   72 (312)
T 3ko8_A            2 RIVVTGGAGFIGSHLVDKL-VELGYEVVVVDNLSSGRREFVNPSAELHVRDLKD-YS----WGAGIK--G-DVVFHFAAN   72 (312)
T ss_dssp             EEEEETTTSHHHHHHHHHH-HHTTCEEEEECCCSSCCGGGSCTTSEEECCCTTS-TT----TTTTCC--C-SEEEECCSS
T ss_pred             EEEEECCCChHHHHHHHHH-HhCCCEEEEEeCCCCCchhhcCCCceEEECcccc-HH----HHhhcC--C-CEEEECCCC
Confidence            6999999999999988888 4579999999987665433222222221 12222 11    333332  3 999999883

>3ay3_A NAD-dependent epimerase/dehydratase; glucuronic acid dehydrogeanse, oxidoreductase; 2.10A {Chromohalobacter salexigens}

Probab=93.43  E-value=0.096  Score=44.53  Aligned_cols=71  Identities=15%  Similarity=0.087  Sum_probs=46.2

Q ss_pred             cEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCcEEEEcCCchhHHHHHHHHhCCCcccEEEECCCC
Q psy1959         163 QTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNKVLEVSGGKYANVVFEAVGG  242 (296)
Q Consensus       163 ~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~g~d~vld~~g~  242 (296)
                      ++|+|+|++|.+|..+++.+ ...|.+|++++++.++..   ..+. ..+ .-+..+ .+.+.++..  ++|++|.+.+.
T Consensus         3 ~~ilVtGatG~iG~~l~~~L-~~~g~~V~~~~r~~~~~~---~~~~-~~~-~~Dl~d-~~~~~~~~~--~~d~vi~~a~~   73 (267)
T 3ay3_A            3 NRLLVTGAAGGVGSAIRPHL-GTLAHEVRLSDIVDLGAA---EAHE-EIV-ACDLAD-AQAVHDLVK--DCDGIIHLGGV   73 (267)
T ss_dssp             EEEEEESTTSHHHHHHGGGG-GGTEEEEEECCSSCCCCC---CTTE-EEC-CCCTTC-HHHHHHHHT--TCSEEEECCSC
T ss_pred             ceEEEECCCCHHHHHHHHHH-HhCCCEEEEEeCCCcccc---CCCc-cEE-EccCCC-HHHHHHHHc--CCCEEEECCcC
Confidence            47999999999999988877 456899999998765421   1121 111 111111 234444443  69999999874

>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13

Probab=93.32  E-value=0.49  Score=40.30  Aligned_cols=98  Identities=13%  Similarity=0.092  Sum_probs=66.3

Q ss_pred             HHcCCCCCcEEEEEcCCCcHHHHHHHHHHHhC-CCEEEEEeCCcchHHHHHhc-----C--C-cEEEEcCCchhHHHHHH
Q psy1959         155 RHAKLKEKQTVLVTAAGGGLGLAAVDMATKIY-KAKVIGVCNSEDKTDLIRQK-----G--A-WAALTFTNEKSLVNKVL  225 (296)
Q Consensus       155 ~~~~~~~g~~vlI~Ga~g~vG~aa~~la~~~~-g~~Vi~~~~~~~~~~~~~~~-----g--~-~~~~~~~~~~~~~~~i~  225 (296)
                      ....++++++||-.|+ | .|..+..+++... +.+|+.++.+++..+.+++.     |  . ...+...+..+.     
T Consensus        93 ~~~~~~~~~~vLdiG~-G-~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~g~~~~~v~~~~~d~~~~-----  165 (280)
T 1i9g_A           93 HEGDIFPGARVLEAGA-G-SGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADS-----  165 (280)
T ss_dssp             HHTTCCTTCEEEEECC-T-TSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGC-----
T ss_pred             HHcCCCCCCEEEEEcc-c-ccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCCcEEEEECchHhc-----
Confidence            5667899999999996 5 6888888884332 57999999999888777653     3  2 222222221111     


Q ss_pred             HHhCCCcccEEEECCCC--ccHHHHHHHhhccCceEEe
Q psy1959         226 EVSGGKYANVVFEAVGG--EDKTDLIRQKGAWAALTFT  261 (296)
Q Consensus       226 ~~~~~~g~d~vld~~g~--~~~~~~~~~lg~~~g~~~~  261 (296)
                       ......+|+|+.....  ..+..+.+.| +++|.+.+
T Consensus       166 -~~~~~~~D~v~~~~~~~~~~l~~~~~~L-~pgG~l~~  201 (280)
T 1i9g_A          166 -ELPDGSVDRAVLDMLAPWEVLDAVSRLL-VAGGVLMV  201 (280)
T ss_dssp             -CCCTTCEEEEEEESSCGGGGHHHHHHHE-EEEEEEEE
T ss_pred             -CCCCCceeEEEECCcCHHHHHHHHHHhC-CCCCEEEE
Confidence             0123479999887665  4788888889 88887754

>1n2s_A DTDP-4-, DTDP-glucose oxidoreductase; rossman-fold, sugar-nucleotide-binding domain; HET: NAD; 2.00A {Salmonella enterica subsp} SCOP: c.2.1.2 PDB: 1kc1_A* 1kc3_A* 1kbz_A*

Probab=93.27  E-value=0.14  Score=44.04  Aligned_cols=63  Identities=16%  Similarity=0.196  Sum_probs=43.2

Q ss_pred             EEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCcEEEEcCCchhHHHHHHHHhCCCcccEEEECCCC
Q psy1959         164 TVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNKVLEVSGGKYANVVFEAVGG  242 (296)
Q Consensus       164 ~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~g~d~vld~~g~  242 (296)
                      +|+|+|++|.+|...++.+ . .|.+|++++++.+-          ...+..+...+.+.+.+    .++|++|.+.+.
T Consensus         2 ~ilVtGatG~iG~~l~~~L-~-~g~~V~~~~r~~~~----------~~~D~~d~~~~~~~~~~----~~~d~vih~a~~   64 (299)
T 1n2s_A            2 NILLFGKTGQVGWELQRSL-A-PVGNLIALDVHSKE----------FCGDFSNPKGVAETVRK----LRPDVIVNAAAH   64 (299)
T ss_dssp             EEEEECTTSHHHHHHHHHT-T-TTSEEEEECTTCSS----------SCCCTTCHHHHHHHHHH----HCCSEEEECCCC
T ss_pred             eEEEECCCCHHHHHHHHHh-h-cCCeEEEecccccc----------ccccCCCHHHHHHHHHh----cCCCEEEECccc
Confidence            6899999999999999988 5 69999999987520          11222331233333322    258999999875

>1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7

Probab=93.27  E-value=0.48  Score=39.03  Aligned_cols=99  Identities=16%  Similarity=0.026  Sum_probs=66.2

Q ss_pred             HHcCCCCCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCC---cEEEEcCCchhHHHHHHHHhCCC
Q psy1959         155 RHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGA---WAALTFTNEKSLVNKVLEVSGGK  231 (296)
Q Consensus       155 ~~~~~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~---~~~~~~~~~~~~~~~i~~~~~~~  231 (296)
                      ....++++++||-.|+ |. |..+..++ +. +.+|+.++.+++..+.+++...   ...+...+..+   .   .....
T Consensus        64 ~~~~~~~~~~vLdiG~-G~-G~~~~~l~-~~-~~~v~~vD~~~~~~~~a~~~~~~~~~v~~~~~d~~~---~---~~~~~  133 (231)
T 1vbf_A           64 DELDLHKGQKVLEIGT-GI-GYYTALIA-EI-VDKVVSVEINEKMYNYASKLLSYYNNIKLILGDGTL---G---YEEEK  133 (231)
T ss_dssp             HHTTCCTTCEEEEECC-TT-SHHHHHHH-HH-SSEEEEEESCHHHHHHHHHHHTTCSSEEEEESCGGG---C---CGGGC
T ss_pred             HhcCCCCCCEEEEEcC-CC-CHHHHHHH-HH-cCEEEEEeCCHHHHHHHHHHHhhcCCeEEEECCccc---c---cccCC
Confidence            5567789999999996 54 88888888 43 5899999999998888876421   22222222111   0   11124


Q ss_pred             cccEEEECCCC-ccHHHHHHHhhccCceEEeecc
Q psy1959         232 YANVVFEAVGG-EDKTDLIRQKGAWAALTFTNEK  264 (296)
Q Consensus       232 g~d~vld~~g~-~~~~~~~~~lg~~~g~~~~~~~  264 (296)
                      .+|+|+....- .....+.+.| +++|.+.+...
T Consensus       134 ~fD~v~~~~~~~~~~~~~~~~L-~pgG~l~~~~~  166 (231)
T 1vbf_A          134 PYDRVVVWATAPTLLCKPYEQL-KEGGIMILPIG  166 (231)
T ss_dssp             CEEEEEESSBBSSCCHHHHHTE-EEEEEEEEEEC
T ss_pred             CccEEEECCcHHHHHHHHHHHc-CCCcEEEEEEc
Confidence            79999987665 3456778888 88988865543

>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A*

Probab=93.25  E-value=0.37  Score=42.03  Aligned_cols=96  Identities=13%  Similarity=0.107  Sum_probs=65.3

Q ss_pred             HHcCCCCCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhc----CCc--EEEEcCCchhHHHHHHHHh
Q psy1959         155 RHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQK----GAW--AALTFTNEKSLVNKVLEVS  228 (296)
Q Consensus       155 ~~~~~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~----g~~--~~~~~~~~~~~~~~i~~~~  228 (296)
                      +..+++++++||-.|+ |. |..+..++++ .+++|+.++.+++..+.+++.    +..  ..+...+..++        
T Consensus        84 ~~~~~~~~~~vLDiGc-G~-G~~~~~la~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--------  152 (318)
T 2fk8_A           84 DKLDLKPGMTLLDIGC-GW-GTTMRRAVER-FDVNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDF--------  152 (318)
T ss_dssp             TTSCCCTTCEEEEESC-TT-SHHHHHHHHH-HCCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGC--------
T ss_pred             HhcCCCCcCEEEEEcc-cc-hHHHHHHHHH-CCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChHHC--------
Confidence            5567889999999997 54 8888888844 489999999999988877653    332  22222221111        


Q ss_pred             CCCcccEEEEC-----CCC----ccHHHHHHHhhccCceEEeec
Q psy1959         229 GGKYANVVFEA-----VGG----EDKTDLIRQKGAWAALTFTNE  263 (296)
Q Consensus       229 ~~~g~d~vld~-----~g~----~~~~~~~~~lg~~~g~~~~~~  263 (296)
                       ...+|+|+..     .+.    ..+..+.+.| +++|.+.+..
T Consensus       153 -~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~L-kpgG~l~~~~  194 (318)
T 2fk8_A          153 -AEPVDRIVSIEAFEHFGHENYDDFFKRCFNIM-PADGRMTVQS  194 (318)
T ss_dssp             -CCCCSEEEEESCGGGTCGGGHHHHHHHHHHHS-CTTCEEEEEE
T ss_pred             -CCCcCEEEEeChHHhcCHHHHHHHHHHHHHhc-CCCcEEEEEE
Confidence             1479999986     432    2466677778 8899886543

>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}

Probab=93.17  E-value=0.51  Score=39.18  Aligned_cols=104  Identities=7%  Similarity=0.044  Sum_probs=65.9

Q ss_pred             HHcCCCCCcEEEEEcCCCcHHHHHHHHHHHhC-CCEEEEEeCCcchHHHHHh----cCCc-EEEEcCCchhHHHHHHHHh
Q psy1959         155 RHAKLKEKQTVLVTAAGGGLGLAAVDMATKIY-KAKVIGVCNSEDKTDLIRQ----KGAW-AALTFTNEKSLVNKVLEVS  228 (296)
Q Consensus       155 ~~~~~~~g~~vlI~Ga~g~vG~aa~~la~~~~-g~~Vi~~~~~~~~~~~~~~----~g~~-~~~~~~~~~~~~~~i~~~~  228 (296)
                      ...+.+++.+||=.|  .+.|..+..+|+... +.+|+.++.+++..+.+++    .|.. ..+.... .+..+.+... 
T Consensus        50 ~~~~~~~~~~vLdiG--~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~~i~~~~-gda~~~l~~~-  125 (221)
T 3dr5_A           50 ATTNGNGSTGAIAIT--PAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFREAGYSPSRVRFLL-SRPLDVMSRL-  125 (221)
T ss_dssp             HHSCCTTCCEEEEES--TTHHHHHHHHHHHSCTTSEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEEC-SCHHHHGGGS-
T ss_pred             HhhCCCCCCCEEEEc--CCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcCcEEEEE-cCHHHHHHHh-
Confidence            344455566999887  466999999994332 6899999999988777754    3543 1122111 2233332222 


Q ss_pred             CCCcccEEEECCCC----ccHHHHHHHhhccCceEEeec
Q psy1959         229 GGKYANVVFEAVGG----EDKTDLIRQKGAWAALTFTNE  263 (296)
Q Consensus       229 ~~~g~d~vld~~g~----~~~~~~~~~lg~~~g~~~~~~  263 (296)
                      ....+|+||-....    ..+..+++.| +++|.+.++.
T Consensus       126 ~~~~fD~V~~d~~~~~~~~~l~~~~~~L-kpGG~lv~dn  163 (221)
T 3dr5_A          126 ANDSYQLVFGQVSPMDLKALVDAAWPLL-RRGGALVLAD  163 (221)
T ss_dssp             CTTCEEEEEECCCTTTHHHHHHHHHHHE-EEEEEEEETT
T ss_pred             cCCCcCeEEEcCcHHHHHHHHHHHHHHc-CCCcEEEEeC
Confidence            13479999875543    2467788888 8999887643

>1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5

Probab=93.17  E-value=0.26  Score=42.35  Aligned_cols=73  Identities=10%  Similarity=0.090  Sum_probs=49.8

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHH-hcCCcEEEEcCCchhHHHHHHHHhCCCcccEEEEC
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIR-QKGAWAALTFTNEKSLVNKVLEVSGGKYANVVFEA  239 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~i~~~~~~~g~d~vld~  239 (296)
                      ++++++|+|+ |++|.+++..+ ...|++|++.+++.++.+.+. +++....+...+..+       ... ..+|+++++
T Consensus       118 ~~k~vlViGa-Gg~g~a~a~~L-~~~G~~V~v~~R~~~~~~~la~~~~~~~~~~~~~~~~-------~~~-~~~DivVn~  187 (271)
T 1nyt_A          118 PGLRILLIGA-GGASRGVLLPL-LSLDCAVTITNRTVSRAEELAKLFAHTGSIQALSMDE-------LEG-HEFDLIINA  187 (271)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHH-HHTTCEEEEECSSHHHHHHHHHHTGGGSSEEECCSGG-------GTT-CCCSEEEEC
T ss_pred             CCCEEEEECC-cHHHHHHHHHH-HHcCCEEEEEECCHHHHHHHHHHhhccCCeeEecHHH-------hcc-CCCCEEEEC
Confidence            6789999998 89999988888 457899999999988875554 443210011111111       111 479999999


Q ss_pred             CCCc
Q psy1959         240 VGGE  243 (296)
Q Consensus       240 ~g~~  243 (296)
                      ++..
T Consensus       188 t~~~  191 (271)
T 1nyt_A          188 TSSG  191 (271)
T ss_dssp             CSCG
T ss_pred             CCCC
Confidence            9963

>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A*

Probab=93.13  E-value=0.24  Score=42.97  Aligned_cols=98  Identities=11%  Similarity=0.033  Sum_probs=65.9

Q ss_pred             HHHHcCCCCCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhc----CCc--EEEEcCCchhHHHHHHH
Q psy1959         153 FSRHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQK----GAW--AALTFTNEKSLVNKVLE  226 (296)
Q Consensus       153 l~~~~~~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~----g~~--~~~~~~~~~~~~~~i~~  226 (296)
                      +.+..+++++++||-+|+ | .|..+..++ +..+++|+.++.+++..+.+++.    +..  ..+...+..+       
T Consensus        64 ~~~~~~~~~~~~vLDiGc-G-~G~~~~~la-~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-------  133 (302)
T 3hem_A           64 ALDKLNLEPGMTLLDIGC-G-WGSTMRHAV-AEYDVNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEE-------  133 (302)
T ss_dssp             HHHTTCCCTTCEEEEETC-T-TSHHHHHHH-HHHCCEEEEEECCHHHHHHHHHHHHHSCCSSCEEEEECCGGG-------
T ss_pred             HHHHcCCCCcCEEEEeec-c-CcHHHHHHH-HhCCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECCHHH-------
Confidence            335667899999999996 4 488888999 44579999999999888777653    432  2222222111       


Q ss_pred             HhCCCcccEEEECCCC----------------ccHHHHHHHhhccCceEEeec
Q psy1959         227 VSGGKYANVVFEAVGG----------------EDKTDLIRQKGAWAALTFTNE  263 (296)
Q Consensus       227 ~~~~~g~d~vld~~g~----------------~~~~~~~~~lg~~~g~~~~~~  263 (296)
                      .  ...+|+|+....-                ..+..+.+.| +++|.+.+..
T Consensus       134 ~--~~~fD~v~~~~~~~~~~d~~~~~~~~~~~~~l~~~~~~L-kpgG~l~i~~  183 (302)
T 3hem_A          134 F--DEPVDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLT-PDDGRMLLHT  183 (302)
T ss_dssp             C--CCCCSEEEEESCGGGTTCCSSCCCTTHHHHHHHHHHHSS-CTTCEEEEEE
T ss_pred             c--CCCccEEEEcchHHhcCccccccchhHHHHHHHHHHHhc-CCCcEEEEEE
Confidence            1  3579999885332                2356667777 8899886543

>1wwk_A Phosphoglycerate dehydrogenase; riken structural genomics/proteomics initiative, RSGI, structural genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus horikoshii}

Probab=93.12  E-value=0.85  Score=39.99  Aligned_cols=45  Identities=11%  Similarity=0.194  Sum_probs=38.3

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCC
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGA  208 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~  208 (296)
                      .|.+|.|+|. |.+|...++.+ +..|++|++.+++.++ +.+.+.|+
T Consensus       141 ~g~~vgIiG~-G~IG~~~A~~l-~~~G~~V~~~d~~~~~-~~~~~~g~  185 (307)
T 1wwk_A          141 EGKTIGIIGF-GRIGYQVAKIA-NALGMNILLYDPYPNE-ERAKEVNG  185 (307)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHH-HHTTCEEEEECSSCCH-HHHHHTTC
T ss_pred             CCceEEEEcc-CHHHHHHHHHH-HHCCCEEEEECCCCCh-hhHhhcCc
Confidence            5889999997 99999999999 5689999999988776 55666665

>1nvm_B Acetaldehyde dehydrogenase (acylating), 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel, substrate channeling; HET: NAD; 1.70A {Pseudomonas SP} SCOP: c.2.1.3 d.81.1.1

Probab=93.10  E-value=0.47  Score=41.83  Aligned_cols=90  Identities=9%  Similarity=0.085  Sum_probs=58.2

Q ss_pred             cEEEEEcCCCcHHHHHHHHHHH-hCCCEEEE-EeCCcch--HHHHHhcCCcEEEEcCCchhHHHHHHHHhCCCcccEEEE
Q psy1959         163 QTVLVTAAGGGLGLAAVDMATK-IYKAKVIG-VCNSEDK--TDLIRQKGAWAALTFTNEKSLVNKVLEVSGGKYANVVFE  238 (296)
Q Consensus       163 ~~vlI~Ga~g~vG~aa~~la~~-~~g~~Vi~-~~~~~~~--~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~g~d~vld  238 (296)
                      -+|.|+|+ |.+|...+..+.+ ..+.+++. .++++++  .+.++++|....  .   .++ +.+.+.+...++|+|++
T Consensus         5 irVaIIG~-G~iG~~~~~~l~~~~~~~elvav~d~~~~~~~~~~a~~~g~~~~--~---~~~-e~ll~~~~~~~iDvV~~   77 (312)
T 1nvm_B            5 LKVAIIGS-GNIGTDLMIKVLRNAKYLEMGAMVGIDAASDGLARAQRMGVTTT--Y---AGV-EGLIKLPEFADIDFVFD   77 (312)
T ss_dssp             EEEEEECC-SHHHHHHHHHHHHHCSSEEEEEEECSCTTCHHHHHHHHTTCCEE--S---SHH-HHHHHSGGGGGEEEEEE
T ss_pred             CEEEEEcC-cHHHHHHHHHHHhhCcCeEEEEEEeCChhhhHHHHHHHcCCCcc--c---CCH-HHHHhccCCCCCcEEEE
Confidence            57899995 9999988887733 45676554 4445455  556667776421  1   222 23333222357999999


Q ss_pred             CCCC-ccHHHHHHHhhcc--CceEE
Q psy1959         239 AVGG-EDKTDLIRQKGAW--AALTF  260 (296)
Q Consensus       239 ~~g~-~~~~~~~~~lg~~--~g~~~  260 (296)
                      +++. .+...+..++ ..  |..++
T Consensus        78 atp~~~h~~~a~~al-~a~~Gk~Vi  101 (312)
T 1nvm_B           78 ATSASAHVQNEALLR-QAKPGIRLI  101 (312)
T ss_dssp             CSCHHHHHHHHHHHH-HHCTTCEEE
T ss_pred             CCChHHHHHHHHHHH-HhCCCCEEE
Confidence            9997 4777888888 55  55553

>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*

Probab=92.89  E-value=1.5  Score=34.28  Aligned_cols=97  Identities=9%  Similarity=0.019  Sum_probs=63.1

Q ss_pred             HHcCCCCCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHh----cCC--cEEEEcCCchhHHHHHHHHh
Q psy1959         155 RHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQ----KGA--WAALTFTNEKSLVNKVLEVS  228 (296)
Q Consensus       155 ~~~~~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~----~g~--~~~~~~~~~~~~~~~i~~~~  228 (296)
                      ....+.++.+|+-.|+ |. |..+..++ +. +.+|++++.+++..+.+++    .+.  ...+..   .+..+.+   .
T Consensus        27 ~~~~~~~~~~vldiG~-G~-G~~~~~l~-~~-~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~---~d~~~~~---~   96 (192)
T 1l3i_A           27 CLAEPGKNDVAVDVGC-GT-GGVTLELA-GR-VRRVYAIDRNPEAISTTEMNLQRHGLGDNVTLME---GDAPEAL---C   96 (192)
T ss_dssp             HHHCCCTTCEEEEESC-TT-SHHHHHHH-TT-SSEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEE---SCHHHHH---T
T ss_pred             HhcCCCCCCEEEEECC-CC-CHHHHHHH-Hh-cCEEEEEECCHHHHHHHHHHHHHcCCCcceEEEe---cCHHHhc---c
Confidence            4456789999999996 55 88888888 43 3899999999988877765    343  222222   2222222   1


Q ss_pred             CCCcccEEEECCCC----ccHHHHHHHhhccCceEEee
Q psy1959         229 GGKYANVVFEAVGG----EDKTDLIRQKGAWAALTFTN  262 (296)
Q Consensus       229 ~~~g~d~vld~~g~----~~~~~~~~~lg~~~g~~~~~  262 (296)
                      ....+|+++.....    ..+..+.+.| +++|.+.+.
T Consensus        97 ~~~~~D~v~~~~~~~~~~~~l~~~~~~l-~~gG~l~~~  133 (192)
T 1l3i_A           97 KIPDIDIAVVGGSGGELQEILRIIKDKL-KPGGRIIVT  133 (192)
T ss_dssp             TSCCEEEEEESCCTTCHHHHHHHHHHTE-EEEEEEEEE
T ss_pred             cCCCCCEEEECCchHHHHHHHHHHHHhc-CCCcEEEEE
Confidence            11379999976542    3455666667 788877543

>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}

Probab=92.81  E-value=0.18  Score=53.35  Aligned_cols=81  Identities=14%  Similarity=0.112  Sum_probs=51.9

Q ss_pred             CCcEEEEEcCCCc-HHHHHHHHHHHhCCCEEEEE-eCCcchHH-HHHhc-------CCcEE---EEcCCchhHHHHHHHH
Q psy1959         161 EKQTVLVTAAGGG-LGLAAVDMATKIYKAKVIGV-CNSEDKTD-LIRQK-------GAWAA---LTFTNEKSLVNKVLEV  227 (296)
Q Consensus       161 ~g~~vlI~Ga~g~-vG~aa~~la~~~~g~~Vi~~-~~~~~~~~-~~~~~-------g~~~~---~~~~~~~~~~~~i~~~  227 (296)
                      .|++++|+|++++ +|.++++.+ ...|++|+++ .++.++.+ .++++       |....   .+..+..+..+.+.++
T Consensus       475 ~GKvALVTGASgGGIGrAIAr~L-A~~GA~VVL~~~R~~e~lee~a~eL~ael~a~Ga~V~vV~~DVTD~esVeaLVe~I  553 (1688)
T 2pff_A          475 KDKYVLITGAGKGSIGAEVLQGL-LQGGAKVVVTTSRFSKQVTDYYQSIYAKYGAKGSTLIVVPFNQGSKQDVEALIEFI  553 (1688)
T ss_dssp             CSCCEEECSCSSSSTHHHHHHHH-HHHTCEEEEEESSCSTTTTTHHHHTTTTTCCTTCEEEEEECCSSSTTHHHHHHHHH
T ss_pred             CCCEEEEECCChHHHHHHHHHHH-HHCcCEEEEEeCCCHHHHHHHHHHHHHHhhcCCCeEEEEEeCCCCHHHHHHHHHHH
Confidence            5789999999998 999987777 3469999988 45554433 22332       33222   2333434555555555


Q ss_pred             hCC-----C--cccEEEECCCC
Q psy1959         228 SGG-----K--YANVVFEAVGG  242 (296)
Q Consensus       228 ~~~-----~--g~d~vld~~g~  242 (296)
                      ...     .  .+|+++++.|.
T Consensus       554 ~e~~~~~GfG~~IDILVNNAGI  575 (1688)
T 2pff_A          554 YDTEKNGGLGWDLDAIIPFAAI  575 (1688)
T ss_dssp             HSCTTSSSCCCCCCEEECCCCC
T ss_pred             HHhccccccCCCCeEEEECCCc
Confidence            433     2  49999999984

>3ajr_A NDP-sugar epimerase; L-threonine dehydrogenase, L-3- hydroxynorvaline, oxidoreductase; HET: NAD; 1.77A {Thermoplasma volcanium} PDB: 3a9w_A* 3a4v_A* 3a1n_A*

Probab=92.79  E-value=0.076  Score=46.21  Aligned_cols=70  Identities=23%  Similarity=0.250  Sum_probs=44.3

Q ss_pred             EEEEEcCCCcHHHHHHHHHHHh-CCCEEEEEeCCcchHHHHHhcCCcEE-EEcCCchhHHHHHHHHhCCCcccEEEECCC
Q psy1959         164 TVLVTAAGGGLGLAAVDMATKI-YKAKVIGVCNSEDKTDLIRQKGAWAA-LTFTNEKSLVNKVLEVSGGKYANVVFEAVG  241 (296)
Q Consensus       164 ~vlI~Ga~g~vG~aa~~la~~~-~g~~Vi~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~i~~~~~~~g~d~vld~~g  241 (296)
                      +|+|+|++|.+|..+++.+.+. .|.+|++++++..+..     +...+ .+..+...+.+.+.+    .++|+||.+.+
T Consensus         1 ~vlVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~-----~~~~~~~D~~d~~~~~~~~~~----~~~d~vih~a~   71 (317)
T 3ajr_A            1 MILVTGSSGQIGTELVPYLAEKYGKKNVIASDIVQRDTG-----GIKFITLDVSNRDEIDRAVEK----YSIDAIFHLAG   71 (317)
T ss_dssp             CEEEESTTSTTHHHHHHHHHHHHCGGGEEEEESSCCCCT-----TCCEEECCTTCHHHHHHHHHH----TTCCEEEECCC
T ss_pred             CEEEEcCCcHHHHHHHHHHHHhcCCCEEEEecCCCcccc-----CceEEEecCCCHHHHHHHHhh----cCCcEEEECCc
Confidence            4899999999999988777342 2679999987655432     22222 233331223222222    37999999988


Q ss_pred             C
Q psy1959         242 G  242 (296)
Q Consensus       242 ~  242 (296)
                      .
T Consensus        72 ~   72 (317)
T 3ajr_A           72 I   72 (317)
T ss_dssp             C
T ss_pred             c
Confidence            4

>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*

Probab=92.79  E-value=0.42  Score=40.07  Aligned_cols=98  Identities=11%  Similarity=0.067  Sum_probs=66.2

Q ss_pred             HHcCCCCCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCc---EEEEcCCchhHHHHHHHHhCCC
Q psy1959         155 RHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAW---AALTFTNEKSLVNKVLEVSGGK  231 (296)
Q Consensus       155 ~~~~~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~---~~~~~~~~~~~~~~i~~~~~~~  231 (296)
                      +...++++.+||-.|+ | .|..+..++++ .+++|+.++.+++..+.+++....   ..+...+..+.      .....
T Consensus        49 ~~~~~~~~~~vLdiG~-G-~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~------~~~~~  119 (266)
T 3ujc_A           49 SDIELNENSKVLDIGS-G-LGGGCMYINEK-YGAHTHGIDICSNIVNMANERVSGNNKIIFEANDILTK------EFPEN  119 (266)
T ss_dssp             TTCCCCTTCEEEEETC-T-TSHHHHHHHHH-HCCEEEEEESCHHHHHHHHHTCCSCTTEEEEECCTTTC------CCCTT
T ss_pred             HhcCCCCCCEEEEECC-C-CCHHHHHHHHH-cCCEEEEEeCCHHHHHHHHHHhhcCCCeEEEECccccC------CCCCC
Confidence            5567789999999996 4 68888888844 489999999999999998876422   22222111111      01235


Q ss_pred             cccEEEECCCCc---------cHHHHHHHhhccCceEEee
Q psy1959         232 YANVVFEAVGGE---------DKTDLIRQKGAWAALTFTN  262 (296)
Q Consensus       232 g~d~vld~~g~~---------~~~~~~~~lg~~~g~~~~~  262 (296)
                      .+|+|+....-.         .+..+.+.| +++|.+.+.
T Consensus       120 ~fD~v~~~~~l~~~~~~~~~~~l~~~~~~L-~pgG~l~~~  158 (266)
T 3ujc_A          120 NFDLIYSRDAILALSLENKNKLFQKCYKWL-KPTGTLLIT  158 (266)
T ss_dssp             CEEEEEEESCGGGSCHHHHHHHHHHHHHHE-EEEEEEEEE
T ss_pred             cEEEEeHHHHHHhcChHHHHHHHHHHHHHc-CCCCEEEEE
Confidence            799999864422         356677777 888887554

>3lt0_A Enoyl-ACP reductase; triclosan, triclosan variant, oxidoredu P.falciparum; HET: NAD FT1; 1.96A {Plasmodium falciparum} SCOP: c.2.1.2 PDB: 1v35_A* 3lsy_A* 1uh5_A* 3lt1_A* 3lt2_A* 3lt4_A* 3am4_A* 3am3_A* 3am5_A* 2o2y_A* 2oos_A* 2ol4_A* 2op0_A* 2op1_A* 1vrw_A* 1zsn_A* 1zw1_A* 1zxb_A* 1zxl_A* 2foi_A* ...

Probab=92.71  E-value=0.049  Score=48.28  Aligned_cols=36  Identities=14%  Similarity=0.171  Sum_probs=28.1

Q ss_pred             CCcEEEEEcCCC--cHHHHHHHHHHHhCCCEEEEEeCCc
Q psy1959         161 EKQTVLVTAAGG--GLGLAAVDMATKIYKAKVIGVCNSE  197 (296)
Q Consensus       161 ~g~~vlI~Ga~g--~vG~aa~~la~~~~g~~Vi~~~~~~  197 (296)
                      ++++++|+|+++  ++|.++++.+ ...|++|++.++++
T Consensus         1 ~~k~~lITGas~~~GIG~aiA~~l-a~~G~~Vv~~~~~~   38 (329)
T 3lt0_A            1 NEDICFIAGIGDTNGYGWGIAKEL-SKRNVKIIFGIWPP   38 (329)
T ss_dssp             CCCEEEEECCSSSSSHHHHHHHHH-HHTTCEEEEEECHH
T ss_pred             CCcEEEEECCCCCCchHHHHHHHH-HHCCCEEEEEecCc
Confidence            367899999864  9999977776 44799999777544

>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A*

Probab=92.65  E-value=0.26  Score=55.26  Aligned_cols=82  Identities=16%  Similarity=0.159  Sum_probs=52.2

Q ss_pred             CCCcEEEEEcCCCcHHHHHHHHHHHhCCCE-EEEEeCCcchH-------HHHHhcCCcEEE---EcCCchhHHHHHHHHh
Q psy1959         160 KEKQTVLVTAAGGGLGLAAVDMATKIYKAK-VIGVCNSEDKT-------DLIRQKGAWAAL---TFTNEKSLVNKVLEVS  228 (296)
Q Consensus       160 ~~g~~vlI~Ga~g~vG~aa~~la~~~~g~~-Vi~~~~~~~~~-------~~~~~~g~~~~~---~~~~~~~~~~~i~~~~  228 (296)
                      +++++++|+|++|++|+++++.+ ...|++ |+.++++..+.       +.+++.|.....   +..+..+..+.+.+..
T Consensus      1882 ~~~k~~lITGgs~GIG~aia~~l-a~~Ga~~vvl~~R~~~~~~~~~~~~~~l~~~g~~v~~~~~Dvsd~~~v~~~~~~~~ 1960 (2512)
T 2vz8_A         1882 PPHKSYVITGGLGGFGLQLAQWL-RLRGAQKLVLTSRSGIRTGYQARQVREWRRQGVQVLVSTSNASSLDGARSLITEAT 1960 (2512)
T ss_dssp             CTTCEEEEESTTSHHHHHHHHHH-HHTTCCEEEEECSSCCCSHHHHHHHHHHHHTTCEEEEECCCSSSHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCHHHHHHHHH-HHCCCCEEEEEeCCCcchHHHHHHHHHHHhCCCEEEEEecCCCCHHHHHHHHHHHH
Confidence            46889999999999999988877 457996 77777765442       222334654332   2333233333333332


Q ss_pred             CCCcccEEEECCCC
Q psy1959         229 GGKYANVVFEAVGG  242 (296)
Q Consensus       229 ~~~g~d~vld~~g~  242 (296)
                      ....+|+++++.|.
T Consensus      1961 ~~g~id~lVnnAgv 1974 (2512)
T 2vz8_A         1961 QLGPVGGVFNLAMV 1974 (2512)
T ss_dssp             HHSCEEEEEECCCC
T ss_pred             hcCCCcEEEECCCc
Confidence            12369999999984

>3zen_D Fatty acid synthase; transferase, mycolic acid biosynthesis, multifunctional ENZY substrate channeling; HET: FMN; 7.50A {Mycobacterium smegmatis} PDB: 4b3y_A*

Probab=92.61  E-value=0.46  Score=53.94  Aligned_cols=82  Identities=16%  Similarity=0.073  Sum_probs=54.3

Q ss_pred             CCCcEEEEEcCCCc-HHHHHHHHHHHhCCCEEEEEeCCcch-----HHHH-Hhc---CCcEE---EEcCCchhHHHHHHH
Q psy1959         160 KEKQTVLVTAAGGG-LGLAAVDMATKIYKAKVIGVCNSEDK-----TDLI-RQK---GAWAA---LTFTNEKSLVNKVLE  226 (296)
Q Consensus       160 ~~g~~vlI~Ga~g~-vG~aa~~la~~~~g~~Vi~~~~~~~~-----~~~~-~~~---g~~~~---~~~~~~~~~~~~i~~  226 (296)
                      -.|++++|+|++++ +|.++++.+ ...|++|++++++.++     .+.+ +++   |....   .+..+..+....+.+
T Consensus      2134 l~gKvaLVTGAs~GsIG~AiA~~L-a~~GA~Vvi~~r~~~~~~~~~~~~l~~~l~~~G~~~~~v~~Dvtd~~~v~~lv~~ 2212 (3089)
T 3zen_D         2134 XXDEVAVVTGASKGSIAASVVGQL-LDGGATVIATTSRLDDDRLAFYKQLYRDHARFDATLWVVPANMASYSDIDKLVEW 2212 (3089)
T ss_dssp             CCCCEEEEESCCTTSHHHHHHHHH-HHTTCEEEEEESCCSHHHHHHHHHHHHHHCCTTCEEEEEECCTTCHHHHHHHHHH
T ss_pred             CCCCEEEEeCCChhHHHHHHHHHH-HHCCCEEEEEeCChhhhhhHHHHHHHHHHhhcCCeEEEEEecCCCHHHHHHHHHH
Confidence            46899999999999 999988777 4579999999988766     3333 233   33222   233442344444444


Q ss_pred             HhC-----CCcccEEEECCCC
Q psy1959         227 VSG-----GKYANVVFEAVGG  242 (296)
Q Consensus       227 ~~~-----~~g~d~vld~~g~  242 (296)
                      ...     -.++|+++++.|.
T Consensus      2213 i~~~~~~~fG~IDILVNNAGi 2233 (3089)
T 3zen_D         2213 VGTEQTESLGPQSIHLKDAQT 2233 (3089)
T ss_dssp             HTSCCEEEESSSEEEECCCCC
T ss_pred             HHhhhhhhcCCCCEEEECCCc
Confidence            432     1368999999885

>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp}

Probab=92.50  E-value=0.18  Score=40.98  Aligned_cols=142  Identities=11%  Similarity=0.136  Sum_probs=82.5

Q ss_pred             CCCCCEEEEecCCCCCcccceEe-eeCCceEECCCCCCHHHHhhhccHHHHHHHHHHHHcCCCCCcEEEEEcCCCcHHHH
Q psy1959          99 LQVGDKVLALNKELLHGFSDQCV-VHTNDVFKIPEKMTFEHAASLADSYSTAQIVFSRHAKLKEKQTVLVTAAGGGLGLA  177 (296)
Q Consensus        99 ~~~Gd~V~~~~~~~~g~~~~~~~-v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vlI~Ga~g~vG~a  177 (296)
                      ++.|+.+...+.     |.+|.. .+....+.+++.+++..... + ........+...  ++++.+||-.|+ |. |..
T Consensus         6 ~~~~~~~~~~p~-----w~~~~~~~~~~~~~~~~~~~~f~~~~~-~-~~~~~~~~l~~~--~~~~~~vLDiG~-G~-G~~   74 (205)
T 3grz_A            6 INLSRHLAIVPE-----WEDYQPVFKDQEIIRLDPGLAFGTGNH-Q-TTQLAMLGIERA--MVKPLTVADVGT-GS-GIL   74 (205)
T ss_dssp             EEEETTEEEEET-----TCCCCCSSTTCEEEEESCC-----CCH-H-HHHHHHHHHHHH--CSSCCEEEEETC-TT-SHH
T ss_pred             EEECCcEEEecc-----ccccccCCCCceeEEecCCcccCCCCC-c-cHHHHHHHHHHh--ccCCCEEEEECC-CC-CHH
Confidence            566776666554     777777 67777888888876655421 0 111112222121  568899999997 44 777


Q ss_pred             HHHHHHHhCCCEEEEEeCCcchHHHHHhc----CCc--EEEEcCCchhHHHHHHHHhCCCcccEEEECCCCcc----HHH
Q psy1959         178 AVDMATKIYKAKVIGVCNSEDKTDLIRQK----GAW--AALTFTNEKSLVNKVLEVSGGKYANVVFEAVGGED----KTD  247 (296)
Q Consensus       178 a~~la~~~~g~~Vi~~~~~~~~~~~~~~~----g~~--~~~~~~~~~~~~~~i~~~~~~~g~d~vld~~g~~~----~~~  247 (296)
                      +..++ +....+|++++.+++..+.+++.    +..  ..+..+- .+.        ....+|+++.......    +..
T Consensus        75 ~~~l~-~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~-~~~--------~~~~fD~i~~~~~~~~~~~~l~~  144 (205)
T 3grz_A           75 AIAAH-KLGAKSVLATDISDESMTAAEENAALNGIYDIALQKTSL-LAD--------VDGKFDLIVANILAEILLDLIPQ  144 (205)
T ss_dssp             HHHHH-HTTCSEEEEEESCHHHHHHHHHHHHHTTCCCCEEEESST-TTT--------CCSCEEEEEEESCHHHHHHHGGG
T ss_pred             HHHHH-HCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEeccc-ccc--------CCCCceEEEECCcHHHHHHHHHH
Confidence            77777 53334999999999887777653    432  2222221 111        1357999998765433    444


Q ss_pred             HHHHhhccCceEEee
Q psy1959         248 LIRQKGAWAALTFTN  262 (296)
Q Consensus       248 ~~~~lg~~~g~~~~~  262 (296)
                      +.+.| +++|.+.+.
T Consensus       145 ~~~~L-~~gG~l~~~  158 (205)
T 3grz_A          145 LDSHL-NEDGQVIFS  158 (205)
T ss_dssp             SGGGE-EEEEEEEEE
T ss_pred             HHHhc-CCCCEEEEE
Confidence            55556 778877553

>3a06_A 1-deoxy-D-xylulose 5-phosphate reductoisomerase; MEP pathway, isoprene biosynthesis, metal- NADP, oxidoreductase; HET: NDP; 2.00A {Thermotoga maritima} PDB: 3a14_A*

Probab=92.46  E-value=0.3  Score=43.95  Aligned_cols=95  Identities=13%  Similarity=0.248  Sum_probs=61.3

Q ss_pred             cEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEe--CCcchH-HHHHhcCCcEEEEcCCchhHH----------HHHHHHhC
Q psy1959         163 QTVLVTAAGGGLGLAAVDMATKIYKAKVIGVC--NSEDKT-DLIRQKGAWAALTFTNEKSLV----------NKVLEVSG  229 (296)
Q Consensus       163 ~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~--~~~~~~-~~~~~~g~~~~~~~~~~~~~~----------~~i~~~~~  229 (296)
                      ++|.|+|++|.+|..++.+.++...++|+++.  ++.+++ +.++++++..+...++ .+..          +.+.++..
T Consensus         4 k~i~ILGsTGSIG~~tldVi~~~~~~~vvaL~a~~n~~~l~~q~~~f~p~~v~v~~~-~~~~~~l~~~~~G~~~l~el~~   82 (376)
T 3a06_A            4 RTLVILGATGSIGTQTLDVLKKVKGIRLIGISFHSNLELAFKIVKEFNVKNVAITGD-VEFEDSSINVWKGSHSIEEMLE   82 (376)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHSCSEEEEEEEESSCHHHHHHHHHHHTCCEEEECSS-CCCCCSSSEEEESTTHHHHHHH
T ss_pred             ceEEEECCCCHHHHHHHHHHHhCCCeEEEEEEccCCHHHHHHHHHHcCCCEEEEccH-HHHHHHHHHHccCHHHHHHHhc
Confidence            67999999999999999999654357888774  344443 3445678766543332 1110          11222222


Q ss_pred             CCcccEEEECCCC-ccHHHHHHHhhccCceE
Q psy1959         230 GKYANVVFEAVGG-EDKTDLIRQKGAWAALT  259 (296)
Q Consensus       230 ~~g~d~vld~~g~-~~~~~~~~~lg~~~g~~  259 (296)
                      ...+|+|+.++-+ ..+.-.+..+ +.|-.+
T Consensus        83 ~~~~D~Vv~AivG~aGL~ptlaAi-~aGK~v  112 (376)
T 3a06_A           83 ALKPDITMVAVSGFSGLRAVLASL-EHSKRV  112 (376)
T ss_dssp             HHCCSEEEECCCSTTHHHHHHHHH-HHCSEE
T ss_pred             CCCCCEEEEEeeCHHHHHHHHHHH-HCCCEE
Confidence            2368999998876 7888888888 555554

>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}

Probab=92.46  E-value=0.57  Score=39.21  Aligned_cols=87  Identities=11%  Similarity=0.051  Sum_probs=56.7

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcc-hHHHHHhcCCcEEEEcCCchhHHHHHHHHhCCCcccEEEEC
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSED-KTDLIRQKGAWAALTFTNEKSLVNKVLEVSGGKYANVVFEA  239 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~g~d~vld~  239 (296)
                      .|.+|||.|+ |.+|...++.+ ...|++|++++.... .++.+.+.+.-..+...-..+         .-.++|+||-+
T Consensus        30 ~gk~VLVVGg-G~va~~ka~~L-l~~GA~VtVvap~~~~~l~~l~~~~~i~~i~~~~~~~---------dL~~adLVIaA   98 (223)
T 3dfz_A           30 KGRSVLVVGG-GTIATRRIKGF-LQEGAAITVVAPTVSAEINEWEAKGQLRVKRKKVGEE---------DLLNVFFIVVA   98 (223)
T ss_dssp             TTCCEEEECC-SHHHHHHHHHH-GGGCCCEEEECSSCCHHHHHHHHTTSCEEECSCCCGG---------GSSSCSEEEEC
T ss_pred             CCCEEEEECC-CHHHHHHHHHH-HHCCCEEEEECCCCCHHHHHHHHcCCcEEEECCCCHh---------HhCCCCEEEEC
Confidence            5789999997 99999999888 557999999886443 333343333222221111010         12479999999


Q ss_pred             CCCccHHHHHHHhhccCceE
Q psy1959         240 VGGEDKTDLIRQKGAWAALT  259 (296)
Q Consensus       240 ~g~~~~~~~~~~lg~~~g~~  259 (296)
                      .+.+..+..+... ...|..
T Consensus        99 T~d~~~N~~I~~~-ak~gi~  117 (223)
T 3dfz_A           99 TNDQAVNKFVKQH-IKNDQL  117 (223)
T ss_dssp             CCCTHHHHHHHHH-SCTTCE
T ss_pred             CCCHHHHHHHHHH-HhCCCE
Confidence            9998777777666 334433

>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1

Probab=92.32  E-value=0.69  Score=40.53  Aligned_cols=101  Identities=18%  Similarity=0.143  Sum_probs=66.7

Q ss_pred             HHcCCCCCcEEEEEcCCCcHHHHHHHHHHHhC-CCEEEEEeCCcchHHHHHhc----CCc-EEEEcCCchhHHHHHHHHh
Q psy1959         155 RHAKLKEKQTVLVTAAGGGLGLAAVDMATKIY-KAKVIGVCNSEDKTDLIRQK----GAW-AALTFTNEKSLVNKVLEVS  228 (296)
Q Consensus       155 ~~~~~~~g~~vlI~Ga~g~vG~aa~~la~~~~-g~~Vi~~~~~~~~~~~~~~~----g~~-~~~~~~~~~~~~~~i~~~~  228 (296)
                      +...++++++||-.|+ |. |..+..+++... ..+|+.++.+++..+.+++.    |.. ..+...+..+   ..   .
T Consensus        69 ~~l~~~~~~~VLDiGc-G~-G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~g~~~v~~~~~d~~~---~~---~  140 (317)
T 1dl5_A           69 EWVGLDKGMRVLEIGG-GT-GYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYY---GV---P  140 (317)
T ss_dssp             HHTTCCTTCEEEEECC-TT-SHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGG---CC---G
T ss_pred             HhcCCCCcCEEEEecC-Cc-hHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCCeEEEECChhh---cc---c
Confidence            5667889999999997 54 788888885433 35799999999988777653    433 2222222111   01   1


Q ss_pred             CCCcccEEEECCCCc-cHHHHHHHhhccCceEEeecc
Q psy1959         229 GGKYANVVFEAVGGE-DKTDLIRQKGAWAALTFTNEK  264 (296)
Q Consensus       229 ~~~g~d~vld~~g~~-~~~~~~~~lg~~~g~~~~~~~  264 (296)
                      ....+|+|+....-+ ....+.+.| +++|.+.+...
T Consensus       141 ~~~~fD~Iv~~~~~~~~~~~~~~~L-kpgG~lvi~~~  176 (317)
T 1dl5_A          141 EFSPYDVIFVTVGVDEVPETWFTQL-KEGGRVIVPIN  176 (317)
T ss_dssp             GGCCEEEEEECSBBSCCCHHHHHHE-EEEEEEEEEBC
T ss_pred             cCCCeEEEEEcCCHHHHHHHHHHhc-CCCcEEEEEEC
Confidence            123699999877664 446677888 89998876543

>2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A

Probab=92.28  E-value=0.5  Score=39.32  Aligned_cols=76  Identities=11%  Similarity=0.094  Sum_probs=51.3

Q ss_pred             CCCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCcEEEEcCCchhHHHHHHHHhCCCcccEEEEC
Q psy1959         160 KEKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNKVLEVSGGKYANVVFEA  239 (296)
Q Consensus       160 ~~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~g~d~vld~  239 (296)
                      ....+++|.|+ |.+|...++.+ ...|. |+++++++++.+.++ .+.. ++..+. .+ .+.+.+. +-.++|.++-+
T Consensus         7 ~~~~~viI~G~-G~~G~~la~~L-~~~g~-v~vid~~~~~~~~~~-~~~~-~i~gd~-~~-~~~l~~a-~i~~ad~vi~~   78 (234)
T 2aef_A            7 AKSRHVVICGW-SESTLECLREL-RGSEV-FVLAEDENVRKKVLR-SGAN-FVHGDP-TR-VSDLEKA-NVRGARAVIVD   78 (234)
T ss_dssp             ---CEEEEESC-CHHHHHHHHHS-TTSEE-EEEESCGGGHHHHHH-TTCE-EEESCT-TC-HHHHHHT-TCTTCSEEEEC
T ss_pred             CCCCEEEEECC-ChHHHHHHHHH-HhCCe-EEEEECCHHHHHHHh-cCCe-EEEcCC-CC-HHHHHhc-CcchhcEEEEc
Confidence            45678999997 99999988888 55688 999999888888777 5643 333221 11 2233332 34578999999


Q ss_pred             CCCc
Q psy1959         240 VGGE  243 (296)
Q Consensus       240 ~g~~  243 (296)
                      .+++
T Consensus        79 ~~~d   82 (234)
T 2aef_A           79 LESD   82 (234)
T ss_dssp             CSCH
T ss_pred             CCCc
Confidence            9874

>3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A

Probab=92.26  E-value=0.54  Score=40.82  Aligned_cols=73  Identities=15%  Similarity=0.121  Sum_probs=48.2

Q ss_pred             CCCcEEEEEcCCCcHHHHHHHHHHHhCCC-EEEEEeCCcchHHHHH-hcC---C-cEEEEcCCchhHHHHHHHHhCCCcc
Q psy1959         160 KEKQTVLVTAAGGGLGLAAVDMATKIYKA-KVIGVCNSEDKTDLIR-QKG---A-WAALTFTNEKSLVNKVLEVSGGKYA  233 (296)
Q Consensus       160 ~~g~~vlI~Ga~g~vG~aa~~la~~~~g~-~Vi~~~~~~~~~~~~~-~~g---~-~~~~~~~~~~~~~~~i~~~~~~~g~  233 (296)
                      -.+++++|+|+ |+.|.+++..+ ...|+ +|++++++.++.+.+. +++   . ..+..... .++.+.+      ..+
T Consensus       125 l~~k~vlVlGa-GG~g~aia~~L-~~~G~~~v~i~~R~~~~a~~la~~~~~~~~~~~i~~~~~-~~l~~~l------~~~  195 (283)
T 3jyo_A          125 AKLDSVVQVGA-GGVGNAVAYAL-VTHGVQKLQVADLDTSRAQALADVINNAVGREAVVGVDA-RGIEDVI------AAA  195 (283)
T ss_dssp             CCCSEEEEECC-SHHHHHHHHHH-HHTTCSEEEEECSSHHHHHHHHHHHHHHHTSCCEEEECS-TTHHHHH------HHS
T ss_pred             cCCCEEEEECC-cHHHHHHHHHH-HHCCCCEEEEEECCHHHHHHHHHHHHhhcCCceEEEcCH-HHHHHHH------hcC
Confidence            36889999998 99999988877 45798 8999999988876553 222   1 11111111 2333322      157


Q ss_pred             cEEEECCC
Q psy1959         234 NVVFEAVG  241 (296)
Q Consensus       234 d~vld~~g  241 (296)
                      |++++|+.
T Consensus       196 DiVInaTp  203 (283)
T 3jyo_A          196 DGVVNATP  203 (283)
T ss_dssp             SEEEECSS
T ss_pred             CEEEECCC
Confidence            99999886

>2o7s_A DHQ-SDH PR, bifunctional 3-dehydroquinate dehydratase/shikima dehydrogenase; shikimate, NADPH, dehydroshikimate, bifunctional enzyme; HET: DHK TLA NAP; 1.78A {Arabidopsis thaliana} PDB: 2o7q_A* 2gpt_A*

Probab=92.24  E-value=0.16  Score=48.21  Aligned_cols=71  Identities=25%  Similarity=0.209  Sum_probs=44.7

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHH-hcCCcEEEEcCCchhHHHHHHHHhCCCcccEEEEC
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIR-QKGAWAALTFTNEKSLVNKVLEVSGGKYANVVFEA  239 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~i~~~~~~~g~d~vld~  239 (296)
                      .+++++|+|+ |++|.+++..+ ...|++|+++.++.++.+.+. +++. ......+       +.+. ....+|+++++
T Consensus       363 ~~k~vlV~Ga-GGig~aia~~L-~~~G~~V~i~~R~~~~a~~la~~~~~-~~~~~~d-------l~~~-~~~~~DilVN~  431 (523)
T 2o7s_A          363 ASKTVVVIGA-GGAGKALAYGA-KEKGAKVVIANRTYERALELAEAIGG-KALSLTD-------LDNY-HPEDGMVLANT  431 (523)
T ss_dssp             ---CEEEECC-SHHHHHHHHHH-HHHCC-CEEEESSHHHHHHHHHHTTC--CEETTT-------TTTC---CCSEEEEEC
T ss_pred             CCCEEEEECC-cHHHHHHHHHH-HHCCCEEEEEECCHHHHHHHHHHcCC-ceeeHHH-------hhhc-cccCceEEEEC
Confidence            4678999998 89999988877 446899999999988876654 4443 2222222       1110 12348999999


Q ss_pred             CCC
Q psy1959         240 VGG  242 (296)
Q Consensus       240 ~g~  242 (296)
                      .|.
T Consensus       432 agv  434 (523)
T 2o7s_A          432 TSM  434 (523)
T ss_dssp             SST
T ss_pred             CCC
Confidence            874

>1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7

Probab=92.21  E-value=0.25  Score=40.93  Aligned_cols=97  Identities=13%  Similarity=0.159  Sum_probs=64.9

Q ss_pred             CCCCCcEEEEEcCCCcHHHHHHHHHHHhCC-------CEEEEEeCCcchHHHHHhc----C-----C-cEEEEcCCchhH
Q psy1959         158 KLKEKQTVLVTAAGGGLGLAAVDMATKIYK-------AKVIGVCNSEDKTDLIRQK----G-----A-WAALTFTNEKSL  220 (296)
Q Consensus       158 ~~~~g~~vlI~Ga~g~vG~aa~~la~~~~g-------~~Vi~~~~~~~~~~~~~~~----g-----~-~~~~~~~~~~~~  220 (296)
                      .++++++||-.|+ |. |..+..+++ ..+       .+|+.++.+++..+.+++.    +     . ...+...+..+ 
T Consensus        81 ~~~~~~~VLdiG~-G~-G~~~~~la~-~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~-  156 (227)
T 1r18_A           81 HLKPGARILDVGS-GS-GYLTACFYR-YIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDGRK-  156 (227)
T ss_dssp             TCCTTCEEEEESC-TT-SHHHHHHHH-HHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESCGGG-
T ss_pred             hCCCCCEEEEECC-Cc-cHHHHHHHH-hcccccCCccCEEEEEEcCHHHHHHHHHHHHhcCccccCCCceEEEECCccc-
Confidence            5788999999996 54 888888884 344       5999999999887777542    1     1 12222222111 


Q ss_pred             HHHHHHHhCCCcccEEEECCCC-ccHHHHHHHhhccCceEEeecc
Q psy1959         221 VNKVLEVSGGKYANVVFEAVGG-EDKTDLIRQKGAWAALTFTNEK  264 (296)
Q Consensus       221 ~~~i~~~~~~~g~d~vld~~g~-~~~~~~~~~lg~~~g~~~~~~~  264 (296)
                        .   ......+|+++..... .....+.++| +++|.+.+...
T Consensus       157 --~---~~~~~~fD~I~~~~~~~~~~~~~~~~L-kpgG~lvi~~~  195 (227)
T 1r18_A          157 --G---YPPNAPYNAIHVGAAAPDTPTELINQL-ASGGRLIVPVG  195 (227)
T ss_dssp             --C---CGGGCSEEEEEECSCBSSCCHHHHHTE-EEEEEEEEEES
T ss_pred             --C---CCcCCCccEEEECCchHHHHHHHHHHh-cCCCEEEEEEe
Confidence              0   1112469999988776 5667888888 99998877654

>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*

Probab=92.13  E-value=0.71  Score=38.96  Aligned_cols=99  Identities=12%  Similarity=0.065  Sum_probs=63.4

Q ss_pred             CCCCCcEEEEEcCCCcHHHHHHHHHHHhC-CCEEEEEeCCcchHHHHHh----cCCc--EEEEcCCchhHHHHHHHHh--
Q psy1959         158 KLKEKQTVLVTAAGGGLGLAAVDMATKIY-KAKVIGVCNSEDKTDLIRQ----KGAW--AALTFTNEKSLVNKVLEVS--  228 (296)
Q Consensus       158 ~~~~g~~vlI~Ga~g~vG~aa~~la~~~~-g~~Vi~~~~~~~~~~~~~~----~g~~--~~~~~~~~~~~~~~i~~~~--  228 (296)
                      ...++++||-.|+  +.|..+..+++... +.+|+.++.+++..+.+++    .|..  ..+...   +..+.+....  
T Consensus        76 ~~~~~~~VLeiG~--G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~i~~~~g---da~~~l~~l~~~  150 (247)
T 1sui_A           76 KLINAKNTMEIGV--YTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREG---PALPVLDEMIKD  150 (247)
T ss_dssp             HHTTCCEEEEECC--GGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEES---CHHHHHHHHHHS
T ss_pred             HhhCcCEEEEeCC--CcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEEC---CHHHHHHHHHhc
Confidence            3456789999884  56888888884323 6899999999988777764    3542  122222   2223333221  


Q ss_pred             --CCCcccEEEECCCC----ccHHHHHHHhhccCceEEee
Q psy1959         229 --GGKYANVVFEAVGG----EDKTDLIRQKGAWAALTFTN  262 (296)
Q Consensus       229 --~~~g~d~vld~~g~----~~~~~~~~~lg~~~g~~~~~  262 (296)
                        ....+|++|-....    ..+..+.+.| +++|.+.+.
T Consensus       151 ~~~~~~fD~V~~d~~~~~~~~~l~~~~~~L-kpGG~lv~d  189 (247)
T 1sui_A          151 EKNHGSYDFIFVDADKDNYLNYHKRLIDLV-KVGGVIGYD  189 (247)
T ss_dssp             GGGTTCBSEEEECSCSTTHHHHHHHHHHHB-CTTCCEEEE
T ss_pred             cCCCCCEEEEEEcCchHHHHHHHHHHHHhC-CCCeEEEEe
Confidence              12479998865432    3567788888 899988654

>3d64_A Adenosylhomocysteinase; structural genomics, ssgcid, S-adenosyl-L-homocysteine hydro NAD, one-carbon metabolism; HET: NAD; 2.30A {Burkholderia pseudomallei} PDB: 3glq_A*

Probab=92.09  E-value=0.7  Score=43.39  Aligned_cols=84  Identities=13%  Similarity=0.047  Sum_probs=59.0

Q ss_pred             CCCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCcEEEEcCCchhHHHHHHHHhCCCcccEEEEC
Q psy1959         160 KEKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNKVLEVSGGKYANVVFEA  239 (296)
Q Consensus       160 ~~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~g~d~vld~  239 (296)
                      -.|++|.|.|. |.+|..+++.+ +.+|++|++.+++..+...+...|...       .+    +.++.  ...|+++.+
T Consensus       275 L~GktVgIIG~-G~IG~~vA~~l-~~~G~~V~v~d~~~~~~~~a~~~G~~~-------~~----l~ell--~~aDiVi~~  339 (494)
T 3d64_A          275 IAGKIAVVAGY-GDVGKGCAQSL-RGLGATVWVTEIDPICALQAAMEGYRV-------VT----MEYAA--DKADIFVTA  339 (494)
T ss_dssp             CTTCEEEEECC-SHHHHHHHHHH-HTTTCEEEEECSCHHHHHHHHTTTCEE-------CC----HHHHT--TTCSEEEEC
T ss_pred             cCCCEEEEEcc-CHHHHHHHHHH-HHCCCEEEEEeCChHhHHHHHHcCCEe-------CC----HHHHH--hcCCEEEEC
Confidence            47899999996 99999999999 678999999999877654445556531       11    22222  368999999


Q ss_pred             CCCc-cH-HHHHHHhhccCceE
Q psy1959         240 VGGE-DK-TDLIRQKGAWAALT  259 (296)
Q Consensus       240 ~g~~-~~-~~~~~~lg~~~g~~  259 (296)
                      ++.. .+ ...+..| +++..+
T Consensus       340 ~~t~~lI~~~~l~~M-K~gAil  360 (494)
T 3d64_A          340 TGNYHVINHDHMKAM-RHNAIV  360 (494)
T ss_dssp             SSSSCSBCHHHHHHC-CTTEEE
T ss_pred             CCcccccCHHHHhhC-CCCcEE
Confidence            8763 33 3566777 554433

>3cea_A MYO-inositol 2-dehydrogenase; NP_786804.1, oxidoreductase FA NAD-binding rossmann fold, structural genomics; HET: NAD; 2.40A {Lactobacillus plantarum WCFS1}

Probab=92.06  E-value=1.1  Score=39.64  Aligned_cols=87  Identities=11%  Similarity=0.077  Sum_probs=58.1

Q ss_pred             CcEEEEEcCCCcHHHHHHHHHH-HhCCCEEE-EEeCCcchHHHH-HhcCCcEEEEcCCchhHHHHHHHHhCCCcccEEEE
Q psy1959         162 KQTVLVTAAGGGLGLAAVDMAT-KIYKAKVI-GVCNSEDKTDLI-RQKGAWAALTFTNEKSLVNKVLEVSGGKYANVVFE  238 (296)
Q Consensus       162 g~~vlI~Ga~g~vG~aa~~la~-~~~g~~Vi-~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~i~~~~~~~g~d~vld  238 (296)
                      --+|.|+|. |.+|...++.++ +..+++++ +.++++++.+.+ +++|....+  .   ++.+    +.....+|+|+.
T Consensus         8 ~~~v~iiG~-G~ig~~~~~~l~~~~~~~~~vav~d~~~~~~~~~a~~~g~~~~~--~---~~~~----~l~~~~~D~V~i   77 (346)
T 3cea_A            8 PLRAAIIGL-GRLGERHARHLVNKIQGVKLVAACALDSNQLEWAKNELGVETTY--T---NYKD----MIDTENIDAIFI   77 (346)
T ss_dssp             CEEEEEECC-STTHHHHHHHHHHTCSSEEEEEEECSCHHHHHHHHHTTCCSEEE--S---CHHH----HHTTSCCSEEEE
T ss_pred             cceEEEEcC-CHHHHHHHHHHHhcCCCcEEEEEecCCHHHHHHHHHHhCCCccc--C---CHHH----HhcCCCCCEEEE
Confidence            357999997 999998888874 34577765 456677776554 456764433  2   2222    223347999999


Q ss_pred             CCCC-ccHHHHHHHhhccCceE
Q psy1959         239 AVGG-EDKTDLIRQKGAWAALT  259 (296)
Q Consensus       239 ~~g~-~~~~~~~~~lg~~~g~~  259 (296)
                      |+.. .....+..++ ..+..+
T Consensus        78 ~tp~~~h~~~~~~al-~~G~~v   98 (346)
T 3cea_A           78 VAPTPFHPEMTIYAM-NAGLNV   98 (346)
T ss_dssp             CSCGGGHHHHHHHHH-HTTCEE
T ss_pred             eCChHhHHHHHHHHH-HCCCEE
Confidence            9998 5778888888 555444

>2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6

Probab=92.04  E-value=0.53  Score=40.25  Aligned_cols=43  Identities=14%  Similarity=0.161  Sum_probs=35.8

Q ss_pred             EEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCC
Q psy1959         164 TVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGA  208 (296)
Q Consensus       164 ~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~  208 (296)
                      +|.|+|+ |.+|.+.+..+ ...|.+|++.++++++.+.+.+.|.
T Consensus         2 ~i~iiG~-G~~G~~~a~~l-~~~g~~V~~~~~~~~~~~~~~~~g~   44 (279)
T 2f1k_A            2 KIGVVGL-GLIGASLAGDL-RRRGHYLIGVSRQQSTCEKAVERQL   44 (279)
T ss_dssp             EEEEECC-SHHHHHHHHHH-HHTTCEEEEECSCHHHHHHHHHTTS
T ss_pred             EEEEEcC-cHHHHHHHHHH-HHCCCEEEEEECCHHHHHHHHhCCC
Confidence            5889996 99999988877 4468899999999988888877665

>3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, amino acid biosynthesis, NADP, oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A*

Probab=91.97  E-value=0.12  Score=44.93  Aligned_cols=41  Identities=12%  Similarity=0.085  Sum_probs=34.1

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCC-EEEEEeCCcchHHHH
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKA-KVIGVCNSEDKTDLI  203 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~-~Vi~~~~~~~~~~~~  203 (296)
                      .+++++|+|+ |+.|.+++..+ ...|+ +|++..|+.++.+.+
T Consensus       116 ~~k~vlvlGa-Gg~g~aia~~L-~~~G~~~v~v~~R~~~~a~~l  157 (277)
T 3don_A          116 EDAYILILGA-GGASKGIANEL-YKIVRPTLTVANRTMSRFNNW  157 (277)
T ss_dssp             GGCCEEEECC-SHHHHHHHHHH-HTTCCSCCEEECSCGGGGTTC
T ss_pred             CCCEEEEECC-cHHHHHHHHHH-HHCCCCEEEEEeCCHHHHHHH
Confidence            5789999997 99999988887 45798 899999998876544

>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405}

Probab=91.96  E-value=0.64  Score=37.22  Aligned_cols=98  Identities=13%  Similarity=0.093  Sum_probs=62.6

Q ss_pred             cCCCCCcEEEEEcCCCcHHHHHHHHHHHh-CCCEEEEEeCCcchHHHHHhc----CC--cEEEEcCCchhHHHHHHHHhC
Q psy1959         157 AKLKEKQTVLVTAAGGGLGLAAVDMATKI-YKAKVIGVCNSEDKTDLIRQK----GA--WAALTFTNEKSLVNKVLEVSG  229 (296)
Q Consensus       157 ~~~~~g~~vlI~Ga~g~vG~aa~~la~~~-~g~~Vi~~~~~~~~~~~~~~~----g~--~~~~~~~~~~~~~~~i~~~~~  229 (296)
                      ..++++++||-.|+ |. |..+..++++. ...+|+.++.+++..+.+++.    +.  ...+...+..++.    .. .
T Consensus        18 ~~~~~~~~vLDlGc-G~-G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~----~~-~   90 (197)
T 3eey_A           18 MFVKEGDTVVDATC-GN-GNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNLIDRVTLIKDGHQNMD----KY-I   90 (197)
T ss_dssp             HHCCTTCEEEESCC-TT-SHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHHHHTTCGGGEEEECSCGGGGG----GT-C
T ss_pred             hcCCCCCEEEEcCC-CC-CHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHh----hh-c
Confidence            35678999999886 44 77888888443 236999999999887777653    43  2222222211111    11 2


Q ss_pred             CCcccEEEECCCC----------------ccHHHHHHHhhccCceEEee
Q psy1959         230 GKYANVVFEAVGG----------------EDKTDLIRQKGAWAALTFTN  262 (296)
Q Consensus       230 ~~g~d~vld~~g~----------------~~~~~~~~~lg~~~g~~~~~  262 (296)
                      ...+|+++...+-                ..+..+.+.| +++|.+.+.
T Consensus        91 ~~~fD~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L-k~gG~l~~~  138 (197)
T 3eey_A           91 DCPVKAVMFNLGYLPSGDHSISTRPETTIQALSKAMELL-VTGGIITVV  138 (197)
T ss_dssp             CSCEEEEEEEESBCTTSCTTCBCCHHHHHHHHHHHHHHE-EEEEEEEEE
T ss_pred             cCCceEEEEcCCcccCcccccccCcccHHHHHHHHHHhC-cCCCEEEEE
Confidence            3579999876532                3577788888 888887554

>1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A*

Probab=91.80  E-value=0.7  Score=37.94  Aligned_cols=97  Identities=15%  Similarity=0.129  Sum_probs=64.3

Q ss_pred             CCCCCcEEEEEcCCCcHHHHHHHHHHHhCC--CEEEEEeCCcchHHHHHhc----CC------cEEEEcCCchhHHHHHH
Q psy1959         158 KLKEKQTVLVTAAGGGLGLAAVDMATKIYK--AKVIGVCNSEDKTDLIRQK----GA------WAALTFTNEKSLVNKVL  225 (296)
Q Consensus       158 ~~~~g~~vlI~Ga~g~vG~aa~~la~~~~g--~~Vi~~~~~~~~~~~~~~~----g~------~~~~~~~~~~~~~~~i~  225 (296)
                      .++++++||-.|+ |. |..+..+++ ..+  .+|+.++.+++..+.+++.    +.      ...+...+...   .  
T Consensus        74 ~~~~~~~vLDiG~-G~-G~~~~~la~-~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~---~--  145 (226)
T 1i1n_A           74 QLHEGAKALDVGS-GS-GILTACFAR-MVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRM---G--  145 (226)
T ss_dssp             TSCTTCEEEEETC-TT-SHHHHHHHH-HHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGG---C--
T ss_pred             hCCCCCEEEEEcC-Cc-CHHHHHHHH-HhCCCcEEEEEeCCHHHHHHHHHHHHhhcccccCCCcEEEEECCccc---C--
Confidence            3788999999996 43 778888884 334  6999999999888777542    21      12222222010   0  


Q ss_pred             HHhCCCcccEEEECCCC-ccHHHHHHHhhccCceEEeecc
Q psy1959         226 EVSGGKYANVVFEAVGG-EDKTDLIRQKGAWAALTFTNEK  264 (296)
Q Consensus       226 ~~~~~~g~d~vld~~g~-~~~~~~~~~lg~~~g~~~~~~~  264 (296)
                       ......+|+++..... ..+..+.+.| +++|.+.+...
T Consensus       146 -~~~~~~fD~i~~~~~~~~~~~~~~~~L-kpgG~lv~~~~  183 (226)
T 1i1n_A          146 -YAEEAPYDAIHVGAAAPVVPQALIDQL-KPGGRLILPVG  183 (226)
T ss_dssp             -CGGGCCEEEEEECSBBSSCCHHHHHTE-EEEEEEEEEES
T ss_pred             -cccCCCcCEEEECCchHHHHHHHHHhc-CCCcEEEEEEe
Confidence             0112369999887665 5678888899 99998877554

>2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6

Probab=91.76  E-value=0.64  Score=39.81  Aligned_cols=45  Identities=18%  Similarity=0.140  Sum_probs=37.1

Q ss_pred             cEEEEEcCCCcHHHHHHHHHHHhCCC--EEEEEeCCcchHHHHHhcCCc
Q psy1959         163 QTVLVTAAGGGLGLAAVDMATKIYKA--KVIGVCNSEDKTDLIRQKGAW  209 (296)
Q Consensus       163 ~~vlI~Ga~g~vG~aa~~la~~~~g~--~Vi~~~~~~~~~~~~~~~g~~  209 (296)
                      .+|.|+|+ |.+|.+.++.+ ...|.  +|++.++++++.+.+++.|..
T Consensus         2 ~~I~iIG~-G~mG~~~a~~l-~~~g~~~~V~~~d~~~~~~~~~~~~g~~   48 (281)
T 2g5c_A            2 QNVLIVGV-GFMGGSFAKSL-RRSGFKGKIYGYDINPESISKAVDLGII   48 (281)
T ss_dssp             CEEEEESC-SHHHHHHHHHH-HHTTCCSEEEEECSCHHHHHHHHHTTSC
T ss_pred             cEEEEEec-CHHHHHHHHHH-HhcCCCcEEEEEeCCHHHHHHHHHCCCc
Confidence            36899996 99999988888 44677  999999999888888877753

>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0

Probab=91.74  E-value=0.34  Score=39.80  Aligned_cols=100  Identities=14%  Similarity=0.150  Sum_probs=63.4

Q ss_pred             cCCCCCcEEEEEcCCCcHHHHHHHHHHHhC-CCEEEEEeCCcchHHHHHhc----CCc--EEEEcCCchhHHHHHHHHhC
Q psy1959         157 AKLKEKQTVLVTAAGGGLGLAAVDMATKIY-KAKVIGVCNSEDKTDLIRQK----GAW--AALTFTNEKSLVNKVLEVSG  229 (296)
Q Consensus       157 ~~~~~g~~vlI~Ga~g~vG~aa~~la~~~~-g~~Vi~~~~~~~~~~~~~~~----g~~--~~~~~~~~~~~~~~i~~~~~  229 (296)
                      ....++.+||=.|+ | .|..+..+++... +.+|+.++.+++..+.+++.    +..  ..+...   +..+.+.....
T Consensus        60 ~~~~~~~~vLdiG~-G-~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~---d~~~~~~~~~~  134 (225)
T 3tr6_A           60 VKLMQAKKVIDIGT-F-TGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKAGLSDKIGLRLS---PAKDTLAELIH  134 (225)
T ss_dssp             HHHHTCSEEEEECC-T-TSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEES---CHHHHHHHHHT
T ss_pred             HHhhCCCEEEEeCC-c-chHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeC---CHHHHHHHhhh
Confidence            33457789998885 3 4888888883322 67999999999887776543    443  222222   23333333322


Q ss_pred             C---CcccEEEECCCCc----cHHHHHHHhhccCceEEee
Q psy1959         230 G---KYANVVFEAVGGE----DKTDLIRQKGAWAALTFTN  262 (296)
Q Consensus       230 ~---~g~d~vld~~g~~----~~~~~~~~lg~~~g~~~~~  262 (296)
                      .   ..+|+|+-.....    .+..+.+.| +++|.+.+.
T Consensus       135 ~~~~~~fD~v~~~~~~~~~~~~l~~~~~~L-~pgG~lv~~  173 (225)
T 3tr6_A          135 AGQAWQYDLIYIDADKANTDLYYEESLKLL-REGGLIAVD  173 (225)
T ss_dssp             TTCTTCEEEEEECSCGGGHHHHHHHHHHHE-EEEEEEEEE
T ss_pred             ccCCCCccEEEECCCHHHHHHHHHHHHHhc-CCCcEEEEe
Confidence            1   4799998654432    467777888 888888653

>1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A*

Probab=91.71  E-value=0.54  Score=38.33  Aligned_cols=77  Identities=13%  Similarity=0.058  Sum_probs=49.2

Q ss_pred             EEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHh-cC-----CcEEEEcCCchhHHHHHHHHhCCCcccEEE
Q psy1959         164 TVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQ-KG-----AWAALTFTNEKSLVNKVLEVSGGKYANVVF  237 (296)
Q Consensus       164 ~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~-~g-----~~~~~~~~~~~~~~~~i~~~~~~~g~d~vl  237 (296)
                      +|+|+|++|.+|...+..+ ...|.+|++.++++++.+.+.+ .+     .+..  .   .+..+.+      +++|+++
T Consensus         2 ~i~iiGa~G~~G~~ia~~l-~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~--~---~~~~~~~------~~~D~Vi   69 (212)
T 1jay_A            2 RVALLGGTGNLGKGLALRL-ATLGHEIVVGSRREEKAEAKAAEYRRIAGDASIT--G---MKNEDAA------EACDIAV   69 (212)
T ss_dssp             EEEEETTTSHHHHHHHHHH-HTTTCEEEEEESSHHHHHHHHHHHHHHHSSCCEE--E---EEHHHHH------HHCSEEE
T ss_pred             eEEEEcCCCHHHHHHHHHH-HHCCCEEEEEeCCHHHHHHHHHHhccccccCCCC--h---hhHHHHH------hcCCEEE
Confidence            5889996699999887777 4468999999998887766544 23     1111  1   1222222      1578888


Q ss_pred             ECCCCccHHHHHHHh
Q psy1959         238 EAVGGEDKTDLIRQK  252 (296)
Q Consensus       238 d~~g~~~~~~~~~~l  252 (296)
                      .++........++.+
T Consensus        70 ~~~~~~~~~~~~~~l   84 (212)
T 1jay_A           70 LTIPWEHAIDTARDL   84 (212)
T ss_dssp             ECSCHHHHHHHHHHT
T ss_pred             EeCChhhHHHHHHHH
Confidence            888864444444433

>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*

Probab=91.69  E-value=1.2  Score=35.89  Aligned_cols=97  Identities=13%  Similarity=0.003  Sum_probs=64.5

Q ss_pred             HHcCCCCCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCc-EEEEcCCchhHHHHHHHHhCCCcc
Q psy1959         155 RHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAW-AALTFTNEKSLVNKVLEVSGGKYA  233 (296)
Q Consensus       155 ~~~~~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~i~~~~~~~g~  233 (296)
                      ....+.++.+||-.|+ | .|..+..++ +. +++|+.++.+++..+.+++.+.. ..+...+..++       .....+
T Consensus        40 ~l~~~~~~~~vLdiG~-G-~G~~~~~l~-~~-~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~d~~~~-------~~~~~~  108 (218)
T 3ou2_A           40 RLRAGNIRGDVLELAS-G-TGYWTRHLS-GL-ADRVTALDGSAEMIAEAGRHGLDNVEFRQQDLFDW-------TPDRQW  108 (218)
T ss_dssp             HHTTTTSCSEEEEESC-T-TSHHHHHHH-HH-SSEEEEEESCHHHHHHHGGGCCTTEEEEECCTTSC-------CCSSCE
T ss_pred             HHhcCCCCCeEEEECC-C-CCHHHHHHH-hc-CCeEEEEeCCHHHHHHHHhcCCCCeEEEecccccC-------CCCCce
Confidence            3445778899999986 4 378888888 43 88999999999999988886632 22222221111       234579


Q ss_pred             cEEEECCCC---------ccHHHHHHHhhccCceEEeec
Q psy1959         234 NVVFEAVGG---------EDKTDLIRQKGAWAALTFTNE  263 (296)
Q Consensus       234 d~vld~~g~---------~~~~~~~~~lg~~~g~~~~~~  263 (296)
                      |+|+....-         ..+..+.+.| +++|.+.+..
T Consensus       109 D~v~~~~~l~~~~~~~~~~~l~~~~~~L-~pgG~l~~~~  146 (218)
T 3ou2_A          109 DAVFFAHWLAHVPDDRFEAFWESVRSAV-APGGVVEFVD  146 (218)
T ss_dssp             EEEEEESCGGGSCHHHHHHHHHHHHHHE-EEEEEEEEEE
T ss_pred             eEEEEechhhcCCHHHHHHHHHHHHHHc-CCCeEEEEEe
Confidence            999975532         1355666777 8888875543

>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae}

Probab=91.60  E-value=0.75  Score=42.57  Aligned_cols=70  Identities=17%  Similarity=0.021  Sum_probs=51.1

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcc----hHHHHHhcCCcEEEEcCCchhHHHHHHHHhCCCc-ccE
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSED----KTDLIRQKGAWAALTFTNEKSLVNKVLEVSGGKY-ANV  235 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~----~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~g-~d~  235 (296)
                      ++++|+|+|. |+.|+++++++ +..|++|.+.|..+.    ..+.+++.|+...+..+. .+.       .  .+ +|+
T Consensus         8 ~~k~v~viG~-G~sG~s~A~~l-~~~G~~V~~~D~~~~~~~~~~~~L~~~gi~~~~g~~~-~~~-------~--~~~~d~   75 (451)
T 3lk7_A            8 ENKKVLVLGL-ARSGEAAARLL-AKLGAIVTVNDGKPFDENPTAQSLLEEGIKVVCGSHP-LEL-------L--DEDFCY   75 (451)
T ss_dssp             TTCEEEEECC-TTTHHHHHHHH-HHTTCEEEEEESSCGGGCHHHHHHHHTTCEEEESCCC-GGG-------G--GSCEEE
T ss_pred             CCCEEEEEee-CHHHHHHHHHH-HhCCCEEEEEeCCcccCChHHHHHHhCCCEEEECCCh-HHh-------h--cCCCCE
Confidence            5789999998 99999999999 568999999998542    345677788754443332 211       1  14 899


Q ss_pred             EEECCCC
Q psy1959         236 VFEAVGG  242 (296)
Q Consensus       236 vld~~g~  242 (296)
                      |+-+.|-
T Consensus        76 vv~spgi   82 (451)
T 3lk7_A           76 MIKNPGI   82 (451)
T ss_dssp             EEECTTS
T ss_pred             EEECCcC
Confidence            9988886

>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A*

Probab=91.58  E-value=1  Score=38.47  Aligned_cols=96  Identities=13%  Similarity=0.136  Sum_probs=63.9

Q ss_pred             HHcCCCCCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhc----CCc--EEEEcCCchhHHHHHHHHh
Q psy1959         155 RHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQK----GAW--AALTFTNEKSLVNKVLEVS  228 (296)
Q Consensus       155 ~~~~~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~----g~~--~~~~~~~~~~~~~~i~~~~  228 (296)
                      +..+++++.+||-.|+ |. |..+..+++ ..+++|+.++.+++..+.+++.    +..  ..+...+..+       . 
T Consensus        58 ~~~~~~~~~~vLDiGc-G~-G~~~~~l~~-~~~~~v~gvd~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~-------~-  126 (287)
T 1kpg_A           58 GKLGLQPGMTLLDVGC-GW-GATMMRAVE-KYDVNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQ-------F-  126 (287)
T ss_dssp             TTTTCCTTCEEEEETC-TT-SHHHHHHHH-HHCCEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGG-------C-
T ss_pred             HHcCCCCcCEEEEECC-cc-cHHHHHHHH-HcCCEEEEEECCHHHHHHHHHHHHhcCCCCCeEEEECChhh-------C-
Confidence            5567789999999996 43 778888884 4588999999999888777653    321  2222222111       1 


Q ss_pred             CCCcccEEEEC-----CC--C--ccHHHHHHHhhccCceEEeec
Q psy1959         229 GGKYANVVFEA-----VG--G--EDKTDLIRQKGAWAALTFTNE  263 (296)
Q Consensus       229 ~~~g~d~vld~-----~g--~--~~~~~~~~~lg~~~g~~~~~~  263 (296)
                      . ..+|+|+..     .+  .  ..+..+.+.| +++|.+.+..
T Consensus       127 ~-~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~L-kpgG~l~~~~  168 (287)
T 1kpg_A          127 D-EPVDRIVSIGAFEHFGHERYDAFFSLAHRLL-PADGVMLLHT  168 (287)
T ss_dssp             C-CCCSEEEEESCGGGTCTTTHHHHHHHHHHHS-CTTCEEEEEE
T ss_pred             C-CCeeEEEEeCchhhcChHHHHHHHHHHHHhc-CCCCEEEEEE
Confidence            1 479999875     22  1  2466777788 8899886543

>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum}

Probab=91.50  E-value=0.64  Score=38.86  Aligned_cols=99  Identities=9%  Similarity=0.032  Sum_probs=63.0

Q ss_pred             CCCCCcEEEEEcCCCcHHHHHHHHHHHhC-CCEEEEEeCCcchHHHHHh----cCCc--EEEEcCCchhHHHHHHHHh--
Q psy1959         158 KLKEKQTVLVTAAGGGLGLAAVDMATKIY-KAKVIGVCNSEDKTDLIRQ----KGAW--AALTFTNEKSLVNKVLEVS--  228 (296)
Q Consensus       158 ~~~~g~~vlI~Ga~g~vG~aa~~la~~~~-g~~Vi~~~~~~~~~~~~~~----~g~~--~~~~~~~~~~~~~~i~~~~--  228 (296)
                      ...++++||-.|+  +.|..+..+++... +.+|+.++.+++..+.+++    .|..  ..+...   +..+.+....  
T Consensus        67 ~~~~~~~VLeiG~--G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~g---da~~~l~~l~~~  141 (237)
T 3c3y_A           67 KLVNAKKTIEVGV--FTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKAGVEHKINFIES---DAMLALDNLLQG  141 (237)
T ss_dssp             HHTTCCEEEEECC--TTSHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEES---CHHHHHHHHHHS
T ss_pred             HhhCCCEEEEeCC--CCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEc---CHHHHHHHHHhc
Confidence            3456789999985  45778888884323 6799999999988777754    3543  222222   2233333321  


Q ss_pred             --CCCcccEEEECCCC----ccHHHHHHHhhccCceEEee
Q psy1959         229 --GGKYANVVFEAVGG----EDKTDLIRQKGAWAALTFTN  262 (296)
Q Consensus       229 --~~~g~d~vld~~g~----~~~~~~~~~lg~~~g~~~~~  262 (296)
                        ....+|++|-....    ..+..+.+.| +++|.+.+.
T Consensus       142 ~~~~~~fD~I~~d~~~~~~~~~l~~~~~~L-~pGG~lv~d  180 (237)
T 3c3y_A          142 QESEGSYDFGFVDADKPNYIKYHERLMKLV-KVGGIVAYD  180 (237)
T ss_dssp             TTCTTCEEEEEECSCGGGHHHHHHHHHHHE-EEEEEEEEE
T ss_pred             cCCCCCcCEEEECCchHHHHHHHHHHHHhc-CCCeEEEEe
Confidence              13479998865443    2467778888 889988664

>3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens}

Probab=91.43  E-value=0.88  Score=39.13  Aligned_cols=44  Identities=20%  Similarity=0.080  Sum_probs=37.0

Q ss_pred             cEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCC
Q psy1959         163 QTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGA  208 (296)
Q Consensus       163 ~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~  208 (296)
                      .+|.|+|. |.+|...++.+ ...|.+|++.++++++.+.+.+.|.
T Consensus         2 ~~i~iIG~-G~mG~~~a~~l-~~~G~~V~~~dr~~~~~~~~~~~g~   45 (287)
T 3pef_A            2 QKFGFIGL-GIMGSAMAKNL-VKAGCSVTIWNRSPEKAEELAALGA   45 (287)
T ss_dssp             CEEEEECC-SHHHHHHHHHH-HHTTCEEEEECSSGGGGHHHHHTTC
T ss_pred             CEEEEEee-cHHHHHHHHHH-HHCCCeEEEEcCCHHHHHHHHHCCC
Confidence            47899997 99999887777 4469999999999999988877654

>3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold, ATP-binding, UBL conjugation pathway, transfer structural genomics consortium, SGC; HET: ATP; 2.00A {Homo sapiens} PDB: 3guc_A*

Probab=91.42  E-value=1.1  Score=39.04  Aligned_cols=35  Identities=20%  Similarity=0.324  Sum_probs=27.5

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCC-EEEEEeCCc
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKA-KVIGVCNSE  197 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~-~Vi~~~~~~  197 (296)
                      ...+|+|.|+ |++|..++..+.+ .|. ++.++|.+.
T Consensus        35 ~~~~VlVvGa-GGlGs~va~~La~-aGVG~i~lvD~D~   70 (292)
T 3h8v_A           35 RTFAVAIVGV-GGVGSVTAEMLTR-CGIGKLLLFDYDK   70 (292)
T ss_dssp             GGCEEEEECC-SHHHHHHHHHHHH-HTCSEEEEECCCB
T ss_pred             hCCeEEEECc-CHHHHHHHHHHHH-cCCCEEEEECCCc
Confidence            4579999998 9999988777734 576 888888655

>3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP}

Probab=91.35  E-value=0.4  Score=41.31  Aligned_cols=76  Identities=16%  Similarity=0.123  Sum_probs=53.1

Q ss_pred             cEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCcEEEEcCCchhHHHHHHHHhCCCcccEEEECCCC
Q psy1959         163 QTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNKVLEVSGGKYANVVFEAVGG  242 (296)
Q Consensus       163 ~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~g~d~vld~~g~  242 (296)
                      .+|.|+|++|.+|...+..+ ...|.+|++.++++++.+.+.+.|....   +. .       +..  ...|++|.|+..
T Consensus        12 m~I~iIG~tG~mG~~la~~l-~~~g~~V~~~~r~~~~~~~~~~~g~~~~---~~-~-------~~~--~~aDvVi~av~~   77 (286)
T 3c24_A           12 KTVAILGAGGKMGARITRKI-HDSAHHLAAIEIAPEGRDRLQGMGIPLT---DG-D-------GWI--DEADVVVLALPD   77 (286)
T ss_dssp             CEEEEETTTSHHHHHHHHHH-HHSSSEEEEECCSHHHHHHHHHTTCCCC---CS-S-------GGG--GTCSEEEECSCH
T ss_pred             CEEEEECCCCHHHHHHHHHH-HhCCCEEEEEECCHHHHHHHHhcCCCcC---CH-H-------HHh--cCCCEEEEcCCc
Confidence            47999997799999988877 4468999999999888888877664221   11 1       111  257888888876


Q ss_pred             ccHHHHHHHh
Q psy1959         243 EDKTDLIRQK  252 (296)
Q Consensus       243 ~~~~~~~~~l  252 (296)
                      ......++.+
T Consensus        78 ~~~~~v~~~l   87 (286)
T 3c24_A           78 NIIEKVAEDI   87 (286)
T ss_dssp             HHHHHHHHHH
T ss_pred             hHHHHHHHHH
Confidence            5555555554

>1v8b_A Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2.40A {Plasmodium falciparum} SCOP: c.2.1.4 c.23.12.3

Probab=91.35  E-value=0.54  Score=43.96  Aligned_cols=85  Identities=13%  Similarity=0.036  Sum_probs=57.8

Q ss_pred             CCCCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCcEEEEcCCchhHHHHHHHHhCCCcccEEEE
Q psy1959         159 LKEKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNKVLEVSGGKYANVVFE  238 (296)
Q Consensus       159 ~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~g~d~vld  238 (296)
                      .-.|++|+|.|. |.+|..+++.+ +.+|++|++.+++..+...+.+.|+..       .+    +.++.  ...|+++-
T Consensus       254 ~l~GktVgIIG~-G~IG~~vA~~l-~~~G~~Viv~d~~~~~~~~a~~~g~~~-------~~----l~ell--~~aDiVi~  318 (479)
T 1v8b_A          254 LISGKIVVICGY-GDVGKGCASSM-KGLGARVYITEIDPICAIQAVMEGFNV-------VT----LDEIV--DKGDFFIT  318 (479)
T ss_dssp             CCTTSEEEEECC-SHHHHHHHHHH-HHHTCEEEEECSCHHHHHHHHTTTCEE-------CC----HHHHT--TTCSEEEE
T ss_pred             ccCCCEEEEEee-CHHHHHHHHHH-HhCcCEEEEEeCChhhHHHHHHcCCEe-------cC----HHHHH--hcCCEEEE
Confidence            347999999996 99999999999 567999999999887654555556521       11    12222  25788888


Q ss_pred             CCCCc-cH-HHHHHHhhccCceE
Q psy1959         239 AVGGE-DK-TDLIRQKGAWAALT  259 (296)
Q Consensus       239 ~~g~~-~~-~~~~~~lg~~~g~~  259 (296)
                      +.+.. .+ ...+..| +++..+
T Consensus       319 ~~~t~~lI~~~~l~~M-K~gail  340 (479)
T 1v8b_A          319 CTGNVDVIKLEHLLKM-KNNAVV  340 (479)
T ss_dssp             CCSSSSSBCHHHHTTC-CTTCEE
T ss_pred             CCChhhhcCHHHHhhc-CCCcEE
Confidence            87663 33 2455566 554443

>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A*

Probab=91.16  E-value=0.52  Score=38.62  Aligned_cols=98  Identities=9%  Similarity=0.106  Sum_probs=62.4

Q ss_pred             CCCCCcEEEEEcCCCcHHHHHHHHHHHhC--CCEEEEEeCCcchHHHHHh----cCCc--EEEEcCCchhHHHHHHHHhC
Q psy1959         158 KLKEKQTVLVTAAGGGLGLAAVDMATKIY--KAKVIGVCNSEDKTDLIRQ----KGAW--AALTFTNEKSLVNKVLEVSG  229 (296)
Q Consensus       158 ~~~~g~~vlI~Ga~g~vG~aa~~la~~~~--g~~Vi~~~~~~~~~~~~~~----~g~~--~~~~~~~~~~~~~~i~~~~~  229 (296)
                      ...++.+||=.|+  +.|..+..++ +..  +++|+.++.+++..+.+++    .|..  ..+...   +..+.+.....
T Consensus        55 ~~~~~~~vLdiG~--G~G~~~~~la-~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~---d~~~~~~~~~~  128 (223)
T 3duw_A           55 QIQGARNILEIGT--LGGYSTIWLA-RGLSSGGRVVTLEASEKHADIARSNIERANLNDRVEVRTG---LALDSLQQIEN  128 (223)
T ss_dssp             HHHTCSEEEEECC--TTSHHHHHHH-TTCCSSCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEES---CHHHHHHHHHH
T ss_pred             HhhCCCEEEEecC--CccHHHHHHH-HhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEc---CHHHHHHHHHh
Confidence            3457889999885  3588888888 444  6799999999988777654    3542  222222   22233333221


Q ss_pred             --CCcccEEEECCCCc----cHHHHHHHhhccCceEEee
Q psy1959         230 --GKYANVVFEAVGGE----DKTDLIRQKGAWAALTFTN  262 (296)
Q Consensus       230 --~~g~d~vld~~g~~----~~~~~~~~lg~~~g~~~~~  262 (296)
                        ...+|+|+-....+    .+..+.+.| +++|.+.+.
T Consensus       129 ~~~~~fD~v~~d~~~~~~~~~l~~~~~~L-~pgG~lv~~  166 (223)
T 3duw_A          129 EKYEPFDFIFIDADKQNNPAYFEWALKLS-RPGTVIIGD  166 (223)
T ss_dssp             TTCCCCSEEEECSCGGGHHHHHHHHHHTC-CTTCEEEEE
T ss_pred             cCCCCcCEEEEcCCcHHHHHHHHHHHHhc-CCCcEEEEe
Confidence              13699998654432    466777888 889977654

>1p77_A Shikimate 5-dehydrogenase; NADPH, oxidoreductase; HET: ATR; 1.95A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 PDB: 1p74_A*

Probab=90.96  E-value=0.46  Score=40.83  Aligned_cols=70  Identities=16%  Similarity=0.132  Sum_probs=47.8

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHH-hcCC--cE-EEEcCCchhHHHHHHHHhCCCcccEE
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIR-QKGA--WA-ALTFTNEKSLVNKVLEVSGGKYANVV  236 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~-~~g~--~~-~~~~~~~~~~~~~i~~~~~~~g~d~v  236 (296)
                      ++++++|+|+ |++|.+++..+ ...|++|++.+++.++.+.+. +++.  .. ..+..          +... ..+|++
T Consensus       118 ~~~~vlvlGa-Gg~g~a~a~~L-~~~G~~v~v~~R~~~~a~~l~~~~~~~~~~~~~~~~----------~~~~-~~~Div  184 (272)
T 1p77_A          118 PNQHVLILGA-GGATKGVLLPL-LQAQQNIVLANRTFSKTKELAERFQPYGNIQAVSMD----------SIPL-QTYDLV  184 (272)
T ss_dssp             TTCEEEEECC-SHHHHTTHHHH-HHTTCEEEEEESSHHHHHHHHHHHGGGSCEEEEEGG----------GCCC-SCCSEE
T ss_pred             CCCEEEEECC-cHHHHHHHHHH-HHCCCEEEEEECCHHHHHHHHHHccccCCeEEeeHH----------Hhcc-CCCCEE
Confidence            5789999997 99999987777 446899999999988876554 3322  11 12111          1101 378999


Q ss_pred             EECCCCc
Q psy1959         237 FEAVGGE  243 (296)
Q Consensus       237 ld~~g~~  243 (296)
                      +++++..
T Consensus       185 In~t~~~  191 (272)
T 1p77_A          185 INATSAG  191 (272)
T ss_dssp             EECCCC-
T ss_pred             EECCCCC
Confidence            9999863

>1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13

Probab=90.93  E-value=0.56  Score=40.10  Aligned_cols=98  Identities=9%  Similarity=0.063  Sum_probs=65.1

Q ss_pred             HHcCCCCCcEEEEEcCCCcHHHHHHHHHHHh-CCCEEEEEeCCcchHHHHHhc-----CCc-EEEEcCCchhHHHHHHHH
Q psy1959         155 RHAKLKEKQTVLVTAAGGGLGLAAVDMATKI-YKAKVIGVCNSEDKTDLIRQK-----GAW-AALTFTNEKSLVNKVLEV  227 (296)
Q Consensus       155 ~~~~~~~g~~vlI~Ga~g~vG~aa~~la~~~-~g~~Vi~~~~~~~~~~~~~~~-----g~~-~~~~~~~~~~~~~~i~~~  227 (296)
                      ....++++++||-.|+ | .|..+..+++.. .+.+|+.++.+++..+.+++.     |.. ..+...+   ..+    .
T Consensus       104 ~~~~~~~~~~VLD~G~-G-~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~g~~~v~~~~~d---~~~----~  174 (275)
T 1yb2_A          104 MRCGLRPGMDILEVGV-G-SGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSD---IAD----F  174 (275)
T ss_dssp             --CCCCTTCEEEEECC-T-TSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSC---TTT----C
T ss_pred             HHcCCCCcCEEEEecC-C-CCHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECc---hhc----c
Confidence            5667889999999986 4 577777888432 267999999999888877653     432 2222222   111    1


Q ss_pred             hCCCcccEEEECCCC--ccHHHHHHHhhccCceEEee
Q psy1959         228 SGGKYANVVFEAVGG--EDKTDLIRQKGAWAALTFTN  262 (296)
Q Consensus       228 ~~~~g~d~vld~~g~--~~~~~~~~~lg~~~g~~~~~  262 (296)
                      .....+|+++.....  ..+..+.+.| +++|.+.+.
T Consensus       175 ~~~~~fD~Vi~~~~~~~~~l~~~~~~L-kpgG~l~i~  210 (275)
T 1yb2_A          175 ISDQMYDAVIADIPDPWNHVQKIASMM-KPGSVATFY  210 (275)
T ss_dssp             CCSCCEEEEEECCSCGGGSHHHHHHTE-EEEEEEEEE
T ss_pred             CcCCCccEEEEcCcCHHHHHHHHHHHc-CCCCEEEEE
Confidence            123469999986665  4688888889 888887553

>3ehe_A UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC, ST genomics, protein structure initiative, NEW YORK SGX resear for structural genomics; HET: NAD; 1.87A {Archaeoglobus fulgidus} SCOP: c.2.1.0

Probab=90.89  E-value=0.095  Score=45.59  Aligned_cols=71  Identities=17%  Similarity=0.148  Sum_probs=40.3

Q ss_pred             EEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCcEEEEcCCchhHHHHHHHHhCCCcccEEEECCCC
Q psy1959         164 TVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNKVLEVSGGKYANVVFEAVGG  242 (296)
Q Consensus       164 ~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~g~d~vld~~g~  242 (296)
                      +|||+|++|.+|..+++.+ ...|..|++..++..+.+.+   .....+..-+..+  +.+.+...  ++|+++.+.+.
T Consensus         3 ~vlVTGatG~iG~~l~~~L-~~~g~~v~~~~~~~~~~~~~---~~~~~~~~~Dl~~--~~~~~~~~--~~d~vih~a~~   73 (313)
T 3ehe_A            3 LIVVTGGAGFIGSHVVDKL-SESNEIVVIDNLSSGNEEFV---NEAARLVKADLAA--DDIKDYLK--GAEEVWHIAAN   73 (313)
T ss_dssp             CEEEETTTSHHHHHHHHHH-TTTSCEEEECCCSSCCGGGS---CTTEEEECCCTTT--SCCHHHHT--TCSEEEECCCC
T ss_pred             EEEEECCCchHHHHHHHHH-HhCCCEEEEEcCCCCChhhc---CCCcEEEECcCCh--HHHHHHhc--CCCEEEECCCC
Confidence            6999999999999988888 45674444433333333222   1111111111111  22333332  79999998873

>3st7_A Capsular polysaccharide synthesis enzyme CAP5F; rossmann fold, cupid domain, short-chain dehydrogenase/reduc NADPH; 2.45A {Staphylococcus aureus} PDB: 2zkl_A 3vhr_A

Probab=90.74  E-value=0.42  Score=42.62  Aligned_cols=31  Identities=19%  Similarity=0.213  Sum_probs=26.7

Q ss_pred             EEEEEcCCCcHHHHHHHHHHHhCCC-EEEEEeC
Q psy1959         164 TVLVTAAGGGLGLAAVDMATKIYKA-KVIGVCN  195 (296)
Q Consensus       164 ~vlI~Ga~g~vG~aa~~la~~~~g~-~Vi~~~~  195 (296)
                      +|+|+|++|.+|..+++.+.+ .|. +|+..++
T Consensus         2 ~VlVtGatG~iG~~l~~~L~~-~g~~~v~~~d~   33 (369)
T 3st7_A            2 NIVITGAKGFVGKNLKADLTS-TTDHHIFEVHR   33 (369)
T ss_dssp             EEEEETTTSHHHHHHHHHHHH-HCCCEEEECCT
T ss_pred             EEEEECCCCHHHHHHHHHHHh-CCCCEEEEECC
Confidence            699999999999998887734 587 9999987

>3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium}

Probab=90.57  E-value=1.1  Score=38.89  Aligned_cols=46  Identities=15%  Similarity=0.122  Sum_probs=38.5

Q ss_pred             cEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCcE
Q psy1959         163 QTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWA  210 (296)
Q Consensus       163 ~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~~  210 (296)
                      .+|.|+|. |.+|...+..+ ...|.+|++.++++++.+.+.+.|...
T Consensus         8 ~~I~iIG~-G~mG~~~a~~l-~~~G~~V~~~dr~~~~~~~~~~~g~~~   53 (303)
T 3g0o_A            8 FHVGIVGL-GSMGMGAARSC-LRAGLSTWGADLNPQACANLLAEGACG   53 (303)
T ss_dssp             CEEEEECC-SHHHHHHHHHH-HHTTCEEEEECSCHHHHHHHHHTTCSE
T ss_pred             CeEEEECC-CHHHHHHHHHH-HHCCCeEEEEECCHHHHHHHHHcCCcc
Confidence            57999997 99999877777 346999999999999999888777644

>3u62_A Shikimate dehydrogenase; shikimate pathway, oxidoreductase; 1.45A {Thermotoga maritima}

Probab=90.40  E-value=0.27  Score=42.04  Aligned_cols=67  Identities=18%  Similarity=0.217  Sum_probs=44.8

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCC-EEEEEeCCcchHHHHHhcCCcEEEEcCCchhHHHHHHHHhCCCcccEEEEC
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKA-KVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNKVLEVSGGKYANVVFEA  239 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~-~Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~g~d~vld~  239 (296)
                      ++ +++|+|+ |+.|.+++..+ ...|+ +|++.+++.+|.+.+.+..  .....   .+..+.+      ..+|+++++
T Consensus       108 ~~-~vliiGa-Gg~a~ai~~~L-~~~G~~~I~v~nR~~~ka~~la~~~--~~~~~---~~~~~~~------~~aDiVIna  173 (253)
T 3u62_A          108 KE-PVVVVGA-GGAARAVIYAL-LQMGVKDIWVVNRTIERAKALDFPV--KIFSL---DQLDEVV------KKAKSLFNT  173 (253)
T ss_dssp             CS-SEEEECC-SHHHHHHHHHH-HHTTCCCEEEEESCHHHHHTCCSSC--EEEEG---GGHHHHH------HTCSEEEEC
T ss_pred             CC-eEEEECc-HHHHHHHHHHH-HHcCCCEEEEEeCCHHHHHHHHHHc--ccCCH---HHHHhhh------cCCCEEEEC
Confidence            46 8999997 99999988877 45788 8999999888766553321  11222   2222211      257899987


Q ss_pred             CC
Q psy1959         240 VG  241 (296)
Q Consensus       240 ~g  241 (296)
                      +.
T Consensus       174 tp  175 (253)
T 3u62_A          174 TS  175 (253)
T ss_dssp             SS
T ss_pred             CC
Confidence            74

>2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A*

Probab=90.37  E-value=1.2  Score=39.59  Aligned_cols=45  Identities=18%  Similarity=0.278  Sum_probs=37.6

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCC
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGA  208 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~  208 (296)
                      .|.+|.|+|. |.+|...++.+ +..|.+|++.+++.++ +.+.+.|.
T Consensus       149 ~g~~vgIIG~-G~iG~~iA~~l-~~~G~~V~~~d~~~~~-~~~~~~g~  193 (334)
T 2dbq_A          149 YGKTIGIIGL-GRIGQAIAKRA-KGFNMRILYYSRTRKE-EVERELNA  193 (334)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHH-HHTTCEEEEECSSCCH-HHHHHHCC
T ss_pred             CCCEEEEEcc-CHHHHHHHHHH-HhCCCEEEEECCCcch-hhHhhcCc
Confidence            5789999997 99999999999 5689999999998877 55555564

>1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme, structural genomics, JCS protein structure initiative, PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3 PDB: 2hae_A*

Probab=90.34  E-value=3.5  Score=37.30  Aligned_cols=104  Identities=15%  Similarity=0.125  Sum_probs=62.6

Q ss_pred             HHHHHHHHHHHHcCCCCCcEEEEEcCCCcHHHHHHHHHHHhCCC-EEEEEeCC----cch---------HHHHHhcCCcE
Q psy1959         145 SYSTAQIVFSRHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKA-KVIGVCNS----EDK---------TDLIRQKGAWA  210 (296)
Q Consensus       145 ~~~ta~~~l~~~~~~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~-~Vi~~~~~----~~~---------~~~~~~~g~~~  210 (296)
                      .+...+.++....+--++.+|+|.|+ |..|..+++++ ...|+ +|++++++    .++         ..++++...  
T Consensus       175 ~lAal~~A~~i~g~~l~~~kVVv~GA-GaAG~~iAkll-~~~G~~~I~v~Dr~Gli~~~R~~~~L~~~k~~~A~~~~~--  250 (388)
T 1vl6_A          175 VSAAFLNALKLTEKKIEEVKVVVNGI-GAAGYNIVKFL-LDLGVKNVVAVDRKGILNENDPETCLNEYHLEIARITNP--  250 (388)
T ss_dssp             HHHHHHHHHHHHTCCTTTCEEEEECC-SHHHHHHHHHH-HHHTCCEEEEEETTEECCTTSGGGCSSHHHHHHHHTSCT--
T ss_pred             HHHHHHHHHHHhCCCCCCcEEEEECC-CHHHHHHHHHH-HhCCCCeEEEEECCCcccCCCcccccCHHHHHHHHhhhc--
Confidence            34444555532332336789999998 99999999999 45688 89999987    544         233333221  


Q ss_pred             EEEcCCchhHHHHHHHHhCCCcccEEEECCCCc-cHHHHHHHhhccCceEEeec
Q psy1959         211 ALTFTNEKSLVNKVLEVSGGKYANVVFEAVGGE-DKTDLIRQKGAWAALTFTNE  263 (296)
Q Consensus       211 ~~~~~~~~~~~~~i~~~~~~~g~d~vld~~g~~-~~~~~~~~lg~~~g~~~~~~  263 (296)
                         .....++.+.+      +++|++|.+++.. .-...++.| +. +.+.|..
T Consensus       251 ---~~~~~~L~eav------~~ADVlIG~Sap~l~t~emVk~M-a~-~pIIfal  293 (388)
T 1vl6_A          251 ---ERLSGDLETAL------EGADFFIGVSRGNILKPEWIKKM-SR-KPVIFAL  293 (388)
T ss_dssp             ---TCCCSCHHHHH------TTCSEEEECSCSSCSCHHHHTTS-CS-SCEEEEC
T ss_pred             ---cCchhhHHHHH------ccCCEEEEeCCCCccCHHHHHhc-CC-CCEEEEc
Confidence               11113343333      2579999998842 344566667 43 3344443

>4f6l_B AUSA reductase domain protein; thioester reductase, oxidoreductase; 3.86A {Staphylococcus aureus}

Probab=90.32  E-value=0.25  Score=46.40  Aligned_cols=39  Identities=18%  Similarity=0.298  Sum_probs=33.3

Q ss_pred             CCCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcch
Q psy1959         160 KEKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDK  199 (296)
Q Consensus       160 ~~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~  199 (296)
                      .+..+|+|+|++|.+|..+++.+ ...|.+|+++++++.+
T Consensus       148 ~~~~~VLVTGatG~iG~~l~~~L-~~~g~~V~~l~R~~~~  186 (508)
T 4f6l_B          148 RPLGNTLLTGATGFLGAYLIEAL-QGYSHRIYCFIRADNE  186 (508)
T ss_dssp             CCCEEEEESCTTSHHHHHHHHHT-BTTEEEEEEEEESSSH
T ss_pred             CCCCeEEEECCccchHHHHHHHH-HhcCCEEEEEECCCCh
Confidence            34579999999999999988888 5578899999998773

>1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: PE8; 2.00A {Archaeoglobus fulgidus}

Probab=90.30  E-value=0.61  Score=40.72  Aligned_cols=44  Identities=23%  Similarity=0.194  Sum_probs=36.8

Q ss_pred             CCCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhc
Q psy1959         160 KEKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQK  206 (296)
Q Consensus       160 ~~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~  206 (296)
                      +..++|.|+|+ |.+|...++.+ . .|.+|++.++++++.+.+.+.
T Consensus        10 ~~~~~V~vIG~-G~MG~~iA~~l-a-aG~~V~v~d~~~~~~~~~~~~   53 (293)
T 1zej_A           10 HHHMKVFVIGA-GLMGRGIAIAI-A-SKHEVVLQDVSEKALEAAREQ   53 (293)
T ss_dssp             --CCEEEEECC-SHHHHHHHHHH-H-TTSEEEEECSCHHHHHHHHHH
T ss_pred             cCCCeEEEEee-CHHHHHHHHHH-H-cCCEEEEEECCHHHHHHHHHH
Confidence            35689999997 99999888888 5 799999999999998887665

>2rh8_A Anthocyanidin reductase; flavonoids, rossmann fold, short chain dehydrogenase/reductase, oxidoreductase; 2.22A {Vitis vinifera} PDB: 3hfs_A

Probab=90.22  E-value=0.39  Score=42.08  Aligned_cols=37  Identities=19%  Similarity=0.086  Sum_probs=31.1

Q ss_pred             CcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcch
Q psy1959         162 KQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDK  199 (296)
Q Consensus       162 g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~  199 (296)
                      +++|||+|++|.+|..+++.+ ...|.+|++++++.++
T Consensus         9 ~~~vlVTGatGfIG~~l~~~L-l~~G~~V~~~~r~~~~   45 (338)
T 2rh8_A            9 KKTACVVGGTGFVASLLVKLL-LQKGYAVNTTVRDPDN   45 (338)
T ss_dssp             CCEEEEECTTSHHHHHHHHHH-HHTTCEEEEEESCTTC
T ss_pred             CCEEEEECCchHHHHHHHHHH-HHCCCEEEEEEcCcch
Confidence            678999999999999988877 4579999988876553

>3fbt_A Chorismate mutase and shikimate 5-dehydrogenase fusion protein; structural genomics, oxidoreductase, amino-acid biosynthesis; 2.10A {Clostridium acetobutylicum}

Probab=90.21  E-value=0.68  Score=40.20  Aligned_cols=43  Identities=23%  Similarity=0.229  Sum_probs=35.5

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCC-EEEEEeCCcchHHHHHh
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKA-KVIGVCNSEDKTDLIRQ  205 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~-~Vi~~~~~~~~~~~~~~  205 (296)
                      .+++++|+|+ |+.|.+++..+ ...|+ +|+++.|+.+|.+.+.+
T Consensus       121 ~~k~vlvlGa-GGaaraia~~L-~~~G~~~v~v~nRt~~ka~~La~  164 (282)
T 3fbt_A          121 KNNICVVLGS-GGAARAVLQYL-KDNFAKDIYVVTRNPEKTSEIYG  164 (282)
T ss_dssp             TTSEEEEECS-STTHHHHHHHH-HHTTCSEEEEEESCHHHHHHHCT
T ss_pred             cCCEEEEECC-cHHHHHHHHHH-HHcCCCEEEEEeCCHHHHHHHHH
Confidence            6889999997 88899988877 45788 99999999888766543

>2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann fold, formate/glycerate dehydrogenase substr binding domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens} PDB: 2wwr_A 2h1s_A 2q50_A

Probab=90.14  E-value=0.69  Score=40.99  Aligned_cols=46  Identities=15%  Similarity=0.135  Sum_probs=38.1

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCC
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGA  208 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~  208 (296)
                      .|.+|.|+|. |.+|...++.+ +..|.+|++.+++.++.+.+.+.|.
T Consensus       154 ~g~~vgIIG~-G~iG~~iA~~l-~~~G~~V~~~d~~~~~~~~~~~~g~  199 (330)
T 2gcg_A          154 TQSTVGIIGL-GRIGQAIARRL-KPFGVQRFLYTGRQPRPEEAAEFQA  199 (330)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHH-GGGTCCEEEEESSSCCHHHHHTTTC
T ss_pred             CCCEEEEECc-CHHHHHHHHHH-HHCCCEEEEECCCCcchhHHHhcCc
Confidence            4789999997 99999999999 6689999999988776666665554

>3rui_A Ubiquitin-like modifier-activating enzyme ATG7; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} PDB: 3t7e_A 3vh3_A 3vh4_A*

Probab=90.11  E-value=2.5  Score=37.65  Aligned_cols=34  Identities=26%  Similarity=0.269  Sum_probs=27.5

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCC-EEEEEeCC
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKA-KVIGVCNS  196 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~-~Vi~~~~~  196 (296)
                      .+.+|+|.|+ |++|..++..+ ...|. ++.++|.+
T Consensus        33 ~~~~VlIvGa-GGlGs~va~~L-a~aGVg~ItlvD~D   67 (340)
T 3rui_A           33 KNTKVLLLGA-GTLGCYVSRAL-IAWGVRKITFVDNG   67 (340)
T ss_dssp             HTCEEEEECC-SHHHHHHHHHH-HHTTCCEEEEECCC
T ss_pred             hCCEEEEECC-CHHHHHHHHHH-HHcCCCEEEEecCC
Confidence            4789999998 99999988888 45687 78877754

>3ktd_A Prephenate dehydrogenase; structural genomics, joint center F structural genomics, JCSG, protein structure initiative; 2.60A {Corynebacterium glutamicum atcc 13032}

Probab=90.04  E-value=1.1  Score=40.02  Aligned_cols=44  Identities=16%  Similarity=0.151  Sum_probs=37.9

Q ss_pred             cEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCC
Q psy1959         163 QTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGA  208 (296)
Q Consensus       163 ~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~  208 (296)
                      .+|.|+|. |.+|.+.+..+ +..|.+|++.++++++.+.+++.|+
T Consensus         9 ~kIgIIG~-G~mG~slA~~L-~~~G~~V~~~dr~~~~~~~a~~~G~   52 (341)
T 3ktd_A            9 RPVCILGL-GLIGGSLLRDL-HAANHSVFGYNRSRSGAKSAVDEGF   52 (341)
T ss_dssp             SCEEEECC-SHHHHHHHHHH-HHTTCCEEEECSCHHHHHHHHHTTC
T ss_pred             CEEEEEee-cHHHHHHHHHH-HHCCCEEEEEeCCHHHHHHHHHcCC
Confidence            57899996 99999988888 4468999999999999888888876

>4a26_A Putative C-1-tetrahydrofolate synthase, cytoplasm; oxidoreductase, hydrolase, leishmaniasis; 2.70A {Leishmania major}

Probab=90.00  E-value=2.1  Score=37.33  Aligned_cols=48  Identities=13%  Similarity=0.069  Sum_probs=35.7

Q ss_pred             HHHHHHHHHHcCCCCCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeC
Q psy1959         147 STAQIVFSRHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCN  195 (296)
Q Consensus       147 ~ta~~~l~~~~~~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~  195 (296)
                      ..+...+.+...--.|.+++|.|.++.+|..++.++ ...|++|++..+
T Consensus       150 ~gv~~lL~~~~i~l~Gk~vvVIG~s~iVG~p~A~lL-~~~gAtVtv~~~  197 (300)
T 4a26_A          150 KGVIVLLKRCGIEMAGKRAVVLGRSNIVGAPVAALL-MKENATVTIVHS  197 (300)
T ss_dssp             HHHHHHHHHHTCCCTTCEEEEECCCTTTHHHHHHHH-HHTTCEEEEECT
T ss_pred             HHHHHHHHHcCCCCCCCEEEEECCCchHHHHHHHHH-HHCCCeEEEEeC
Confidence            334445544433348999999998677899999999 557999988875

>2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis}

Probab=89.97  E-value=1.1  Score=38.71  Aligned_cols=85  Identities=12%  Similarity=0.112  Sum_probs=52.2

Q ss_pred             cEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCcEEEE-----cC-CchhHHHHHHHHhCCCcccEE
Q psy1959         163 QTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALT-----FT-NEKSLVNKVLEVSGGKYANVV  236 (296)
Q Consensus       163 ~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~~~~~-----~~-~~~~~~~~i~~~~~~~g~d~v  236 (296)
                      .+|.|+|+ |.+|.+.+..+ ...|.+|++.++++++.+.+++.|......     .. ...+. ..+.+  .-..+|++
T Consensus         4 m~i~iiG~-G~~G~~~a~~l-~~~g~~V~~~~r~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~d~v   78 (316)
T 2ew2_A            4 MKIAIAGA-GAMGSRLGIML-HQGGNDVTLIDQWPAHIEAIRKNGLIADFNGEEVVANLPIFSP-EEIDH--QNEQVDLI   78 (316)
T ss_dssp             CEEEEECC-SHHHHHHHHHH-HHTTCEEEEECSCHHHHHHHHHHCEEEEETTEEEEECCCEECG-GGCCT--TSCCCSEE
T ss_pred             CeEEEECc-CHHHHHHHHHH-HhCCCcEEEEECCHHHHHHHHhCCEEEEeCCCeeEecceeecc-hhhcc--cCCCCCEE
Confidence            36899997 99999877766 346889999999998888887766422110     00 00000 00000  01267888


Q ss_pred             EECCCCccHHHHHHHh
Q psy1959         237 FEAVGGEDKTDLIRQK  252 (296)
Q Consensus       237 ld~~g~~~~~~~~~~l  252 (296)
                      |-|+........++.+
T Consensus        79 i~~v~~~~~~~v~~~l   94 (316)
T 2ew2_A           79 IALTKAQQLDAMFKAI   94 (316)
T ss_dssp             EECSCHHHHHHHHHHH
T ss_pred             EEEeccccHHHHHHHH
Confidence            8888765555555554

>1edz_A 5,10-methylenetetrahydrofolate dehydrogenase; nucleotide-binding domain, monofunctional, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: c.2.1.7 c.58.1.2 PDB: 1ee9_A*

Probab=89.96  E-value=0.59  Score=41.32  Aligned_cols=76  Identities=16%  Similarity=0.036  Sum_probs=46.7

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchH-HHHHhcCCcEE-E-Ec--CCchhHHHHHHHHhCCCcccE
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKT-DLIRQKGAWAA-L-TF--TNEKSLVNKVLEVSGGKYANV  235 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~-~~~~~~g~~~~-~-~~--~~~~~~~~~i~~~~~~~g~d~  235 (296)
                      .|.+++|.|++..+|..+++++ ...|++|++.+++..+. +...+++.... . ..  .+..++    .+..  +.+|+
T Consensus       176 ~gk~vvVIG~G~iVG~~~A~~L-~~~gAtVtv~nR~~~~l~~ra~~la~~~~~~t~~~~t~~~~L----~e~l--~~ADI  248 (320)
T 1edz_A          176 YGKKCIVINRSEIVGRPLAALL-ANDGATVYSVDVNNIQKFTRGESLKLNKHHVEDLGEYSEDLL----KKCS--LDSDV  248 (320)
T ss_dssp             TTCEEEEECCCTTTHHHHHHHH-HTTSCEEEEECSSEEEEEESCCCSSCCCCEEEEEEECCHHHH----HHHH--HHCSE
T ss_pred             CCCEEEEECCCcchHHHHHHHH-HHCCCEEEEEeCchHHHHhHHHHHhhhcccccccccccHhHH----HHHh--ccCCE
Confidence            7899999998556799999999 56799999888763322 11122221100 1 00  100223    3332  25899


Q ss_pred             EEECCCCc
Q psy1959         236 VFEAVGGE  243 (296)
Q Consensus       236 vld~~g~~  243 (296)
                      ++.++|.+
T Consensus       249 VIsAtg~p  256 (320)
T 1edz_A          249 VITGVPSE  256 (320)
T ss_dssp             EEECCCCT
T ss_pred             EEECCCCC
Confidence            99999985

>1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6

Probab=89.93  E-value=1.5  Score=38.74  Aligned_cols=82  Identities=17%  Similarity=0.097  Sum_probs=51.2

Q ss_pred             cEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCcEEEE--------cC-CchhHHHHHHHHhCCCcc
Q psy1959         163 QTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALT--------FT-NEKSLVNKVLEVSGGKYA  233 (296)
Q Consensus       163 ~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~~~~~--------~~-~~~~~~~~i~~~~~~~g~  233 (296)
                      .+|.|+|+ |.+|...+..+ ...|.+|++.++++++.+.+++.+......        .. ...+..+    ..  ..+
T Consensus         5 mki~iiG~-G~~G~~~a~~L-~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~--~~~   76 (359)
T 1bg6_A            5 KTYAVLGL-GNGGHAFAAYL-ALKGQSVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGL----AV--KDA   76 (359)
T ss_dssp             CEEEEECC-SHHHHHHHHHH-HHTTCEEEEECSCHHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHH----HH--TTC
T ss_pred             CeEEEECC-CHHHHHHHHHH-HhCCCEEEEEeCCHHHHHHHHhcCCeEEeccccccccccceecCCHHH----HH--hcC
Confidence            47999997 99998877766 346899999999988888877653111100        00 0012221    11  257


Q ss_pred             cEEEECCCCccHHHHHHHh
Q psy1959         234 NVVFEAVGGEDKTDLIRQK  252 (296)
Q Consensus       234 d~vld~~g~~~~~~~~~~l  252 (296)
                      |++|-|+........++.+
T Consensus        77 D~vi~~v~~~~~~~~~~~l   95 (359)
T 1bg6_A           77 DVILIVVPAIHHASIAANI   95 (359)
T ss_dssp             SEEEECSCGGGHHHHHHHH
T ss_pred             CEEEEeCCchHHHHHHHHH
Confidence            8888888875445555544

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	296
d2fzwa2	176	c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (	8e-11
d2jhfa2	176	c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (	5e-10
d1gu7a2	189	c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yea	6e-10
d1qora2	179	c.2.1.1 (A:113-291) Quinone oxidoreductase {Escher	2e-09
d1kola2	195	c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Ps	3e-09
d1f8fa2	174	c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {	4e-09
d1piwa1	192	b.35.1.2 (A:1-152,A:321-360) Cinnamyl alcohol dehy	5e-09
d2fzwa1	197	b.35.1.2 (A:1-162,A:339-373) Alcohol dehydrogenase	1e-08
d1cdoa2	175	c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Ga	4e-08
d1pqwa_	183	c.2.1.1 (A:) Putative enoyl reductase domain of po	5e-08
d1llua1	175	b.35.1.2 (A:2-143,A:310-342) Alcohol dehydrogenase	9e-08
d1tt7a1	162	b.35.1.2 (A:2-127,A:295-330) Hypothetical protein	1e-07
d1cdoa1	199	b.35.1.2 (A:1-164,A:340-374) Alcohol dehydrogenase	1e-07
d1d1ta2	176	c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (	6e-07
d1kola1	201	b.35.1.2 (A:2-160,A:356-397) Formaldehyde dehydrog	1e-06
d1p0fa2	174	c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog	3e-06
d1e3ia2	174	c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (	1e-05
d1tt7a2	167	c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bac	2e-05
d1e3ia1	202	b.35.1.2 (A:1-167,A:342-376) Alcohol dehydrogenase	6e-05
d1jqba2	174	c.2.1.1 (A:1140-1313) Bacterial secondary alcohol	8e-05
d1e3ja1	178	b.35.1.2 (A:4-142,A:313-351) Ketose reductase (sor	2e-04
d1gu7a1	175	b.35.1.2 (A:23-160,A:350-386) 2,4-dienoyl-CoA redu	2e-04
d1v3va2	182	c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehyd	2e-04
d1yo6a1	250	c.2.1.2 (A:1-250) Putative carbonyl reductase snif	4e-04
d1iz0a1	131	b.35.1.2 (A:1-98,A:270-302) Quinone oxidoreductase	4e-04
d1f8fa1	194	b.35.1.2 (A:4-162,A:337-371) Benzyl alcohol dehydr	4e-04
d1vj1a2	187	c.2.1.1 (A:125-311) Putative zinc-binding alcohol	7e-04
d1yb5a2	174	c.2.1.1 (A:121-294) Quinone oxidoreductase {Human	8e-04
d1vj0a1	184	b.35.1.2 (A:2-155,A:338-367) Hypothetical protein	0.001
d1vj0a2	182	c.2.1.1 (A:156-337) Hypothetical protein TM0436 {T	0.001
d1rjwa2	168	c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillu	0.002
d1h2ba1	171	b.35.1.2 (A:17-154,A:327-359) Alcohol dehydrogenas	0.003
d1iz0a2	171	c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus	0.003
d1o89a1	146	b.35.1.2 (A:1-115,A:293-323) Hypothetical protein	0.004
d1p0fa1	198	b.35.1.2 (A:1001-1163,A:1338-1372) Alcohol dehydro	0.004

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} Length = 176

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

 Score = 57.7 bits (138), Expect = 8e-11
 Identities = 21/109 (19%), Positives = 37/109 (33%), Gaps = 1/109 (0%)

Query: 136 FEHAASLADSYSTAQIVFSRHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCN 195
            +    L    ST        AKL+      V   GG      +        +++IGV  
Sbjct: 3   LDKVCLLGCGISTGYGAAVNTAKLEPGSVCAVFGLGGVGLAVIMGCK-VAGASRIIGVDI 61

Query: 196 SEDKTDLIRQKGAWAALTFTNEKSLVNKVLEVSGGKYANVVFEAVGGED 244
           ++DK    ++ GA   +   +    + +VL        +  FE +G   
Sbjct: 62  NKDKFARAKEFGATECINPQDFSKPIQEVLIEMTDGGVDYSFECIGNVK 110

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]} Length = 176

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

 Score = 55.4 bits (132), Expect = 5e-10
 Identities = 22/108 (20%), Positives = 40/108 (37%), Gaps = 1/108 (0%)

Query: 136 FEHAASLADSYSTAQIVFSRHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCN 195
            E    +   +ST      + AK+ +  T  V   GG      +         ++IGV  
Sbjct: 3   LEKVCLIGCGFSTGYGSAVKVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAA-RIIGVDI 61

Query: 196 SEDKTDLIRQKGAWAALTFTNEKSLVNKVLEVSGGKYANVVFEAVGGE 243
           ++DK    ++ GA   +   + K  + +VL        +  FE +G  
Sbjct: 62  NKDKFAKAKEVGATECVNPQDYKKPIQEVLTEMSNGGVDFSFEVIGRL 109

>d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]} Length = 189

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: 2,4-dienoyl-CoA reductase
species: Yeast (Candida tropicalis) [TaxId: 5482]

 Score = 55.4 bits (132), Expect = 6e-10
 Identities = 21/117 (17%), Positives = 40/117 (34%), Gaps = 8/117 (6%)

Query: 134 MTFEHAASLADSYSTAQIVFSRHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGV 193
           +T    A+++ +  TA ++ + + KL   +   +   G            K+     I V
Sbjct: 1   LTINQGATISVNPLTAYLMLTHYVKLTPGKDWFIQNGGTSAVGKYASQIGKLLNFNSISV 60

Query: 194 C----NSEDKTDLIRQKGAWAALTFT----NEKSLVNKVLEVSGGKYANVVFEAVGG 242
                N ++    +++ GA   +T       E     K      G  A +    VGG
Sbjct: 61  IRDRPNLDEVVASLKELGATQVITEDQNNSREFGPTIKEWIKQSGGEAKLALNCVGG 117

>d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]} Length = 179

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]

 Score = 53.5 bits (127), Expect = 2e-09
 Identities = 35/109 (32%), Positives = 56/109 (51%), Gaps = 2/109 (1%)

Query: 135 TFEHAASLADSYSTAQIVFSRHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVC 194
           +FE AA+      T   +  +  ++K  +  L  AA GG+GL A   A K   AK+IG  
Sbjct: 2   SFEQAAASFLKGLTVYYLLRKTYEIKPDEQFLFHAAAGGVGLIACQWA-KALGAKLIGTV 60

Query: 195 NSEDKTDLIRQKGAWAALTFTNEKSLVNKVLEVSGGKYANVVFEAVGGE 243
            +  K     + GAW  + +  E  LV ++ E++GGK   VV+++VG +
Sbjct: 61  GTAQKAQSALKAGAWQVINYREE-DLVERLKEITGGKKVRVVYDSVGRD 108

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} Length = 195

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

 Score = 53.7 bits (128), Expect = 3e-09
 Identities = 22/106 (20%), Positives = 36/106 (33%), Gaps = 5/106 (4%)

Query: 139 AASLADSYSTA-QIVFSRHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSE 197
              L+D   T         A +    TV V  AG   GLAA   A  +    V+ V +  
Sbjct: 4   LTCLSDILPTGYHGA--VTAGVGPGSTVYVAGAGPV-GLAAAASARLLGA-AVVIVGDLN 59

Query: 198 DKTDLIRQKGAWAALTFTNEKSLVNKVLEVSGGKYANVVFEAVGGE 243
                  +   +     + +  L  ++  + G    +   +AVG E
Sbjct: 60  PARLAHAKAQGFEIADLSLDTPLHEQIAALLGEPEVDCAVDAVGFE 105

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} Length = 174

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

 Score = 53.0 bits (126), Expect = 4e-09
 Identities = 23/109 (21%), Positives = 40/109 (36%), Gaps = 3/109 (2%)

Query: 136 FEHAASLADSYSTAQIVFSRHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCN 195
            E    L     T         K+    + +   AG   GL+A+  A     + +I V  
Sbjct: 3   IELLGPLGCGIQTGAGACINALKVTPASSFVTWGAGAV-GLSALLAAKVCGASIIIAVDI 61

Query: 196 SEDKTDLIRQKGAWAALTFTNEKSLVNKVLEVSGGKYANVVFEAVGGED 244
            E + +L +Q GA   +    +   V  + E++ G   N   E+ G  +
Sbjct: 62  VESRLELAKQLGATHVINSKTQ-DPVAAIKEITDGG-VNFALESTGSPE 108

>d1piwa1 b.35.1.2 (A:1-152,A:321-360) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 192

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 52.9 bits (126), Expect = 5e-09
 Identities = 24/170 (14%), Positives = 50/170 (29%), Gaps = 23/170 (13%)

Query: 1   VRIDIQCCALNSSDLLLYNGSGDAKPTLPLVPGFEFSGTIIEKKMMTRINSSDLLLYNGS 60
           + I I+ C +  SD+    G       +PLV G E  G +++    +             
Sbjct: 36  IDIKIEACGVCGSDIHCAAG-HWGNMKMPLVVGHEIVGKVVKLGPKSNSGLK-------- 86

Query: 61  GDAKPTLPLVPGFEFSGTVIEVADTKSSSTEEDD---EEDVLQVGDKVLALNKELLHGFS 117
                      G          +  +    + D+       +    +          G++
Sbjct: 87  ----------VGQRVGVGAQVFSCLECDRCKNDNEPYCTKFVTTYSQPYEDGYVSQGGYA 136

Query: 118 DQCVVHTNDVFKIPEKMTFEHAASLADSYSTAQIVFSRHAKLKEKQTVLV 167
           +   VH + V  IPE +  E           A     +   ++ + T++ 
Sbjct: 137 NYVRVHEHFVVPIPENIWVETLPVGEAGVHEAFERMEK-GDVRYRFTLVG 185

>d2fzwa1 b.35.1.2 (A:1-162,A:339-373) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} Length = 197

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

 Score = 51.8 bits (123), Expect = 1e-08
 Identities = 30/172 (17%), Positives = 55/172 (31%), Gaps = 14/172 (8%)

Query: 1   VRIDIQCCALNSSDLLLYNGSGDAKPTLPLVPGFEFSGTIIEKKMMTRINSSDLLLYNGS 60
           VRI I   A+  +D    +G  D +   P++ G   +G +            + +    +
Sbjct: 34  VRIKIIATAVCHTDAYTLSG-ADPEGCFPVILGHLGAGIVES--------VGEGVTKLKA 84

Query: 61  GDAKPTLPLVPGFEFSGTVIEVADTKSSSTEEDDEEDVLQVGDKVLALNKELLH-----G 115
           GD    L +    E    +    +          +  +     +     K +LH      
Sbjct: 85  GDTVIPLYIPQCGECKFCLNPKTNLCQKIRVTQGKGLMPDGTSRFTCKGKTILHYMGTST 144

Query: 116 FSDQCVVHTNDVFKIPEKMTFEHAASLADSYSTAQIVFSRHAKLKEKQTVLV 167
           FS+  VV    V KI   +  +   +   S+      F      K  +TV+ 
Sbjct: 145 FSEYTVVADISVAKIDPLIKVDEFVTHNLSFDEINKAFELMHSGKSIRTVVK 196

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]} Length = 175

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

 Score = 50.0 bits (118), Expect = 4e-08
 Identities = 20/109 (18%), Positives = 35/109 (32%), Gaps = 1/109 (0%)

Query: 136 FEHAASLADSYSTAQIVFSRHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCN 195
            +    L    ST        AK++   T  V   G     A +         ++I V  
Sbjct: 3   LDTVCLLGCGVSTGFGAAVNTAKVEPGSTCAVFGLGAVGLAAVMGC-HSAGAKRIIAVDL 61

Query: 196 SEDKTDLIRQKGAWAALTFTNEKSLVNKVLEVSGGKYANVVFEAVGGED 244
           + DK +  +  GA   +   +    +++VL        +   E VG   
Sbjct: 62  NPDKFEKAKVFGATDFVNPNDHSEPISQVLSKMTNGGVDFSLECVGNVG 110

>d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]} Length = 183

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative enoyl reductase domain of polyketide synthase
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 50.0 bits (118), Expect = 5e-08
 Identities = 24/106 (22%), Positives = 46/106 (43%), Gaps = 2/106 (1%)

Query: 137 EHAASLADSYSTAQIVFSRHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNS 196
             AA+   +Y TA        +L   + VL+ +A GG+G+AAV +A  I         + 
Sbjct: 1   NEAATFGVAYLTAWHSLCEVGRLSPGERVLIHSATGGVGMAAVSIAKMIGARIYTTAGS- 59

Query: 197 EDKTDLIRQKGAWAALTFTNEKSLVNKVLEVSGGKYANVVFEAVGG 242
            D    +  +     +  +      +++LE++ G   +VV  ++ G
Sbjct: 60  -DAKREMLSRLGVEYVGDSRSVDFADEILELTDGYGVDVVLNSLAG 104

>d1llua1 b.35.1.2 (A:2-143,A:310-342) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} Length = 175

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 48.8 bits (115), Expect = 9e-08
 Identities = 27/167 (16%), Positives = 48/167 (28%), Gaps = 25/167 (14%)

Query: 1   VRIDIQCCALNSSDLLLYNGSGDAKPTLPLVPGFEFSGTIIEKKMMTRINSSDLLLYNGS 60
           V + I+   +  +DL    G    KP LP +PG E  G +                  GS
Sbjct: 33  VLVKIEASGVCHTDLHAAEGDWPVKPPLPFIPGHEGVGYVAAV---------------GS 77

Query: 61  GDAKPTLPLVPGFEFSGTVIEVADTKSSSTEEDDEEDVLQVGDKVLALNKELLHGFSDQC 120
           G            +    V       +    E        + +        +  G+++  
Sbjct: 78  GV--------TRVKEGDRVGIPWLYTACGCCEHCLTGWETLCESQQNTGYSVNGGYAEYV 129

Query: 121 VVHTNDVFKIPEKMTFEHAASLADSYSTAQIVFSRHAKLKEKQTVLV 167
           +   N V  +P+ +         D  +    +    A   E + VL 
Sbjct: 130 LADPNYVGILPKNVKATIHPGKLDDINQI--LDQMRAGQIEGRIVLE 174

>d1tt7a1 b.35.1.2 (A:2-127,A:295-330) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]} Length = 162

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Hypothetical protein YhfP
species: Bacillus subtilis [TaxId: 1423]

 Score = 48.3 bits (114), Expect = 1e-07
 Identities = 8/61 (13%), Positives = 20/61 (32%), Gaps = 1/61 (1%)

Query: 114 HGFSDQCVVHTNDVFKIPEKMTFEHAASLADSYSTAQIVFSRHAKLKEKQTVLVTAAGGG 173
            G S+   V  + +  +P+ ++ + A          + V          + +L     G 
Sbjct: 99  GGLSEYASVPGDWLVPLPQNLSLKEAMVDQLLTIVDREVS-LEETPGALKDILQNRIQGR 157

Query: 174 L 174
           +
Sbjct: 158 V 158

>d1cdoa1 b.35.1.2 (A:1-164,A:340-374) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]} Length = 199

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

 Score = 48.8 bits (115), Expect = 1e-07
 Identities = 11/53 (20%), Positives = 17/53 (32%)

Query: 115 GFSDQCVVHTNDVFKIPEKMTFEHAASLADSYSTAQIVFSRHAKLKEKQTVLV 167
            FS   VV+   V KI   +  +   +      +           K  +TVL 
Sbjct: 146 TFSQYTVVNQIAVAKIDPSVKLDEFITHRMPLESVNDAIDLMKHGKCIRTVLS 198

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} Length = 176

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

 Score = 46.4 bits (109), Expect = 6e-07
 Identities = 23/109 (21%), Positives = 45/109 (41%), Gaps = 1/109 (0%)

Query: 136 FEHAASLADSYSTAQIVFSRHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCN 195
            E    +   +ST      +  K+K   T +V   GG  GL+ +        +++IG+  
Sbjct: 4   PEKVCLIGCGFSTGYGAAVKTGKVKPGSTCVVFGLGGV-GLSVIMGCKSAGASRIIGIDL 62

Query: 196 SEDKTDLIRQKGAWAALTFTNEKSLVNKVLEVSGGKYANVVFEAVGGED 244
           ++DK +     GA   ++  +    +++VL    G      FE +G  +
Sbjct: 63  NKDKFEKAMAVGATECISPKDSTKPISEVLSEMTGNNVGYTFEVIGHLE 111

>d1kola1 b.35.1.2 (A:2-160,A:356-397) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} Length = 201

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

 Score = 46.0 bits (108), Expect = 1e-06
 Identities = 12/77 (15%), Positives = 25/77 (32%), Gaps = 9/77 (11%)

Query: 114 HGFSDQCVVHTND--VFKIPEKMTFEHAASLADSYSTAQIVFSRHAKLKEKQTVLVTAAG 171
            G ++  +V   D  + K+P++       ++A+      I     A     +        
Sbjct: 132 GGQAEYVLVPYADFNLLKLPDRDKAMEKINIAEVVGVQVISLDD-APRGYGEF-----DA 185

Query: 172 GGLGLAAVDMATKIYKA 188
           G      +D   K + A
Sbjct: 186 GVPKKFVIDPH-KTFSA 201

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]} Length = 174

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

 Score = 44.5 bits (104), Expect = 3e-06
 Identities = 20/104 (19%), Positives = 37/104 (35%), Gaps = 1/104 (0%)

Query: 139 AASLADSYSTAQIVFSRHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSED 198
           +  +   ++T        AK+    T  V   GG  G +A+        +++IGV   +D
Sbjct: 5   SCLIGCGFATGYGAAVNTAKVTPGSTCAVFGLGGV-GFSAIVGCKAAGASRIIGVGTHKD 63

Query: 199 KTDLIRQKGAWAALTFTNEKSLVNKVLEVSGGKYANVVFEAVGG 242
           K     + GA   L   +    + +V+        +   E  G 
Sbjct: 64  KFPKAIELGATECLNPKDYDKPIYEVICEKTNGGVDYAVECAGR 107

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} Length = 174

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

 Score = 42.2 bits (98), Expect = 1e-05
 Identities = 18/109 (16%), Positives = 34/109 (31%), Gaps = 1/109 (0%)

Query: 136 FEHAASLADSYSTAQIVFSRHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCN 195
            E    +   +S+        AK+    T  V   G   GL+A+        +++I +  
Sbjct: 3   LERVCLIGCGFSSGYGAAINTAKVTPGSTCAVFGLGCV-GLSAIIGCKIAGASRIIAIDI 61

Query: 196 SEDKTDLIRQKGAWAALTFTNEKSLVNKVLEVSGGKYANVVFEAVGGED 244
           + +K    +  GA   L        V  V+        +   +  G   
Sbjct: 62  NGEKFPKAKALGATDCLNPRELDKPVQDVITELTAGGVDYSLDCAGTAQ 110

>d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]} Length = 167

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhfP
species: Bacillus subtilis [TaxId: 1423]

 Score = 41.9 bits (97), Expect = 2e-05
 Identities = 22/89 (24%), Positives = 36/89 (40%), Gaps = 4/89 (4%)

Query: 155 RHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTF 214
           ++    EK +VLVT A GG+G  AV M  K     V    N E    L +   +      
Sbjct: 17  QNGLSPEKGSVLVTGATGGVGGIAVSMLNKRGYDVVASTGNREAADYLKQLGASE----V 72

Query: 215 TNEKSLVNKVLEVSGGKYANVVFEAVGGE 243
            + + + +  L+    +      + VGG+
Sbjct: 73  ISREDVYDGTLKALSKQQWQGAVDPVGGK 101

>d1e3ia1 b.35.1.2 (A:1-167,A:342-376) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} Length = 202

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

 Score = 41.0 bits (95), Expect = 6e-05
 Identities = 7/53 (13%), Positives = 21/53 (39%), Gaps = 3/53 (5%)

Query: 115 GFSDQCVVHTNDVFKIPEKMTFEHAASLADSYSTAQIVFSRHAKLKEKQTVLV 167
            FS   VV   ++ ++ ++   +   + A  + +          +KE +++  
Sbjct: 149 SFSQYTVVSEANLARVDDEFDLDLLVTHALPFESINDAI---DLMKEGKSIRT 198

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} Length = 174

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

 Score = 40.3 bits (93), Expect = 8e-05
 Identities = 26/111 (23%), Positives = 48/111 (43%), Gaps = 5/111 (4%)

Query: 134 MTFEHAASLADSYSTA-QIVFSRHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKAKVIG 192
           M  E+A  + D  +T         A ++   +V+V    G +GL  +  A      ++IG
Sbjct: 1   MPLENAVMITDMMTTGFHGA--ELADIEMGSSVVVIGI-GAVGLMGIAGAKLRGAGRIIG 57

Query: 193 VCNSEDKTDLIRQKGAWAALTFTNEKSLVNKVLEVSGGKYANVVFEAVGGE 243
           V +     +  +  GA   L + N     ++V++++ GK  + V  A GG 
Sbjct: 58  VGSRPICVEAAKFYGATDILNYKNGHI-EDQVMKLTNGKGVDRVIMAGGGS 107

>d1e3ja1 b.35.1.2 (A:4-142,A:313-351) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} Length = 178

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

 Score = 39.2 bits (90), Expect = 2e-04
 Identities = 8/51 (15%), Positives = 17/51 (33%), Gaps = 1/51 (1%)

Query: 120 CVVHTNDVFKIPEKMTFEHAASLADSYSTAQIVFSRHAKLKEKQTVLVTAA 170
            V   +   K+P+    +   + +         F   A+ K   T+ V  +
Sbjct: 126 YVHAADFCHKLPDNCNVKQLVTHSFKLEQTVDAF-EAARKKADNTIKVMIS 175

>d1gu7a1 b.35.1.2 (A:23-160,A:350-386) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]} Length = 175

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: 2,4-dienoyl-CoA reductase
species: Yeast (Candida tropicalis) [TaxId: 5482]

 Score = 39.4 bits (90), Expect = 2e-04
 Identities = 7/68 (10%), Positives = 19/68 (27%), Gaps = 2/68 (2%)

Query: 114 HGFSDQCVVHTNDVFKIPEKMTFEHAASLADSYSTA-QIVFSRHAKLKEKQTVLVTAAG- 171
           +  + +     ND   I      +  A+   +  T  + + + +   K    +       
Sbjct: 106 NFGTWRTHALGNDDDFIKLPNPAQSKANGKPNGLTDAKSIETLYDGTKPLHELYQDGVAN 165

Query: 172 GGLGLAAV 179
              G   +
Sbjct: 166 SKDGKQLI 173

>d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]} Length = 182

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

 Score = 38.9 bits (89), Expect = 2e-04
 Identities = 28/114 (24%), Positives = 50/114 (43%), Gaps = 5/114 (4%)

Query: 130 IPEKMTFEHAASLADSYSTAQIVFSRHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKAK 189
           +P  +      ++     TA         +K  +TVLV+AA G +G     +  K+   K
Sbjct: 1   LPLSL---ALGTIGMPGLTAYFGLLEVCGVKGGETVLVSAAAGAVGSVVGQI-AKLKGCK 56

Query: 190 VIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNKVLEVSGGKYANVVFEAVGGE 243
           V+G   S++K   ++Q G  AA       + + + L+ +     +  F+ VGGE
Sbjct: 57  VVGAAGSDEKIAYLKQIGFDAA-FNYKTVNSLEEALKKASPDGYDCYFDNVGGE 109

>d1yo6a1 c.2.1.2 (A:1-250) Putative carbonyl reductase sniffer {Caenorhabditis elegans [TaxId: 6239]} Length = 250

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative carbonyl reductase sniffer
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 39.1 bits (90), Expect = 4e-04
 Identities = 20/90 (22%), Positives = 35/90 (38%), Gaps = 8/90 (8%)

Query: 161 EKQTVLVTAAGGGLGLA-AVDMATKIYKAKVIGVCNSEDKTDLIRQ----KGAWAALTFT 215
              +V+VT A  G+GL     +        +I      +K   ++     +     LT T
Sbjct: 2   SPGSVVVTGANRGIGLGLVQQLVKDKNIRHIIATARDVEKATELKSIKDSRVHVLPLTVT 61

Query: 216 NEKS---LVNKVLEVSGGKYANVVFEAVGG 242
            +KS    V+KV E+ G    +++    G 
Sbjct: 62  CDKSLDTFVSKVGEIVGSDGLSLLINNAGV 91

>d1iz0a1 b.35.1.2 (A:1-98,A:270-302) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]} Length = 131

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

 Score = 37.5 bits (86), Expect = 4e-04
 Identities = 6/53 (11%), Positives = 13/53 (24%), Gaps = 2/53 (3%)

Query: 115 GFSDQCVVHTNDVFKIPEKMTFEHAASLADSYSTAQIVFSRHAKLKEKQTVLV 167
           G +++  V    +  +PE                A           +   V+ 
Sbjct: 80  GLAERVAVPKGALLPLPEGRPVVGPVFPFAEAEAAFRALLDRGHTGK--VVVR 130

>d1f8fa1 b.35.1.2 (A:4-162,A:337-371) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} Length = 194

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

 Score = 38.4 bits (88), Expect = 4e-04
 Identities = 10/80 (12%), Positives = 20/80 (25%), Gaps = 26/80 (32%)

Query: 114 HGFSDQCVVHTNDVFKIPEKMTFEHAASLADSYSTAQIVFSRHAKLKEKQTVLVTAAGGG 173
             F+   +   N+  K+ +   F+                                A   
Sbjct: 140 SSFATYALSRENNTVKVTKDFPFDQLV--------------------------KFYAFDE 173

Query: 174 LGLAAVDMATKIYKAKVIGV 193
           +  AA+D    I    +I +
Sbjct: 174 INQAAIDSRKGITLKPIIKI 193

>d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} Length = 187

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative zinc-binding alcohol dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 37.7 bits (86), Expect = 7e-04
 Identities = 18/122 (14%), Positives = 36/122 (29%), Gaps = 3/122 (2%)

Query: 142 LADSYSTAQIVFSRHAKLKE--KQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDK 199
           +     T+ I       +     QT++V+ A G  G         +     +       +
Sbjct: 9   IGMPGLTSLIGVQEKGHISAGSNQTMVVSGAAGACGS-LAGQIGHLLGCSRVVGICGTQE 67

Query: 200 TDLIRQKGAWAALTFTNEKSLVNKVLEVSGGKYANVVFEAVGGEDKTDLIRQKGAWAALT 259
             L              +   V + L  +     +V F+ VGG+    +I Q    + + 
Sbjct: 68  KCLFLTSELGFDAAVNYKTGNVAEQLREACPGGVDVYFDNVGGDISNTVISQMNENSHII 127

Query: 260 FT 261
             
Sbjct: 128 LC 129

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]} Length = 174

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.3 bits (85), Expect = 8e-04
 Identities = 10/34 (29%), Positives = 17/34 (50%)

Query: 134 MTFEHAASLADSYSTAQIVFSRHAKLKEKQTVLV 167
           + F+  A++   Y TA       A +K  ++VLV
Sbjct: 1   LDFKQGAAIGIPYFTAYRALIHSACVKAGESVLV 34

>d1vj0a1 b.35.1.2 (A:2-155,A:338-367) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} Length = 184

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

 Score = 36.7 bits (84), Expect = 0.001
 Identities = 11/54 (20%), Positives = 21/54 (38%), Gaps = 8/54 (14%)

Query: 115 GFSDQCVVHT-NDVFKIPEKMTFEHAASLADSYSTAQIVFSRHAKLKEKQTVLV 167
            +S   V+    DV K+ EK+T      L ++            + +E   V++
Sbjct: 135 CYSSHIVLDPETDVLKVSEKITHR--LPLKEANKAL-----ELMESREALKVIL 181

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} Length = 182

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

 Score = 36.5 bits (83), Expect = 0.001
 Identities = 18/123 (14%), Positives = 44/123 (35%), Gaps = 5/123 (4%)

Query: 136 FEHAASLADSYSTAQIVFSRHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCN 195
            +  A    S +TA   F  + +    +TV++  AG       V   +   +  ++   +
Sbjct: 3   LDVLAMAMCSGATAYHAFDEYPESFAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGS 62

Query: 196 SEDKTDLIRQKGAWAALTFTNE-KSLVNKVLEVSGGKYANVVFEAVGG----EDKTDLIR 250
                                  +     +++++ G+ A+ + EA G      + ++L+R
Sbjct: 63  PNRLKLAEEIGADLTLNRRETSVEERRKAIMDITHGRGADFILEATGDSRALLEGSELLR 122

Query: 251 QKG 253
           + G
Sbjct: 123 RGG 125

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} Length = 168

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 35.9 bits (81), Expect = 0.002
 Identities = 16/77 (20%), Positives = 29/77 (37%), Gaps = 3/77 (3%)

Query: 134 MTFEHAASLADSYSTAQIVFSRHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGV 193
           ++FE AA +  +  T      +    K  + V +   GG           K     V+ V
Sbjct: 1   LSFEEAAPIFCAGVTTYKAL-KVTGAKPGEWVAIYGIGGLGH--VAVQYAKAMGLNVVAV 57

Query: 194 CNSEDKTDLIRQKGAWA 210
              ++K +L ++ GA  
Sbjct: 58  DIGDEKLELAKELGADL 74

>d1h2ba1 b.35.1.2 (A:17-154,A:327-359) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]} Length = 171

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

 Score = 35.4 bits (80), Expect = 0.003
 Identities = 10/54 (18%), Positives = 18/54 (33%), Gaps = 2/54 (3%)

Query: 114 HGFSDQCVVHTNDVFKIPEKMTFEHAASLADSYSTAQIVFSRHAKLKEKQTVLV 167
            GF++        V K+P+ +  E      D  +       +   L     VL+
Sbjct: 119 GGFAEFMRTSHRSVIKLPKDVRVEVDIHKLDEINDVLERLEKGEVLGR--AVLI 170

>d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]} Length = 171

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

 Score = 35.4 bits (80), Expect = 0.003
 Identities = 10/35 (28%), Positives = 19/35 (54%), Gaps = 1/35 (2%)

Query: 134 MTFEHAASLADSYSTAQIVFSRHAKLKEKQTVLVT 168
           ++ E AA+   S+ TA +   + A+ +  + VLV 
Sbjct: 1   LSPEEAAAFPVSFLTAYLAL-KRAQARPGEKVLVQ 34

>d1o89a1 b.35.1.2 (A:1-115,A:293-323) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]} Length = 146

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

 Score = 34.9 bits (79), Expect = 0.004
 Identities = 4/36 (11%), Positives = 12/36 (33%)

Query: 114 HGFSDQCVVHTNDVFKIPEKMTFEHAASLADSYSTA 149
            G ++Q  V  + +  +P+    +  +         
Sbjct: 96  GGLAEQARVKGDWLVAMPQGQAAKEISLSEAPNFAE 131

>d1p0fa1 b.35.1.2 (A:1001-1163,A:1338-1372) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]} Length = 198

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

 Score = 35.2 bits (80), Expect = 0.004
 Identities = 10/65 (15%), Positives = 21/65 (32%), Gaps = 11/65 (16%)

Query: 113 LHGFSDQCVVHTNDVFKIPEKMTFEHAASLADSYSTAQIVFSRHAKLKEKQTVLVTAAGG 172
              F++  VV    V KI  K+      S   +            ++ +   +L +  G 
Sbjct: 143 TSTFTEYTVVADIAVAKIDPKINVNFLVSTKLTL----------DQINKAFELLSSGQGV 192

Query: 173 -GLGL 176
             + +
Sbjct: 193 RSIMI 197

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	296
d1yb5a1	150	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	99.95
d1e3ja1	178	Ketose reductase (sorbitol dehydrogenase) {Silverl	99.94
d1llua1	175	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	99.94
d1qora1	147	Quinone oxidoreductase {Escherichia coli [TaxId: 5	99.93
d1cdoa1	199	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	99.93
d1h2ba1	171	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	99.93
d1rjwa1	171	Alcohol dehydrogenase {Bacillus stearothermophilus	99.93
d2fzwa1	197	Alcohol dehydrogenase {Human (Homo sapiens), diffe	99.92
d1xa0a1	152	B. subtilis YhfP homologue {Bacillus stearothermop	99.92
d1piwa1	192	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	99.92
d1iz0a1	131	Quinone oxidoreductase {Thermus thermophilus [TaxI	99.92
d1pl8a1	185	Ketose reductase (sorbitol dehydrogenase) {Human (	99.92
d1e3ia1	202	Alcohol dehydrogenase {Mouse (Mus musculus), class	99.92
d1yb5a2	174	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	99.91
d1vj0a1	184	Hypothetical protein TM0436 {Thermotoga maritima [	99.9
d1jvba1	177	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	99.9
d1f8fa1	194	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	99.9
d1kola1	201	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	99.9
d1qora2	179	Quinone oxidoreductase {Escherichia coli [TaxId: 5	99.89
d1o89a1	146	Hypothetical protein YhdH {Escherichia coli [TaxId	99.89
d2jhfa1	198	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	99.88
d1tt7a1	162	Hypothetical protein YhfP {Bacillus subtilis [TaxI	99.88
d1uufa1	179	Hypothetical protein YahK {Escherichia coli [TaxId	99.87
d1gu7a1	175	2,4-dienoyl-CoA reductase {Yeast (Candida tropical	99.87
d1iz0a2	171	Quinone oxidoreductase {Thermus thermophilus [TaxI	99.87
d1pqwa_	183	Putative enoyl reductase domain of polyketide synt	99.87
d1xa0a2	176	B. subtilis YhfP homologue {Bacillus stearothermop	99.87
d1v3va2	182	Leukotriene b4 12-hydroxydehydrogenase/prostagland	99.87
d1jqba1	177	Bacterial secondary alcohol dehydrogenase {Clostri	99.87
d1p0fa1	198	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	99.86
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	99.86
d1jvba2	170	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	99.85
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	99.84
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	99.84
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	99.84
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	99.83
d2fzwa2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	99.83
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	99.83
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	99.82
d2jhfa2	176	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	99.82
d1gu7a2	189	2,4-dienoyl-CoA reductase {Yeast (Candida tropical	99.82
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	99.81
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	99.81
d1cdoa2	175	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	99.81
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	99.81
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	99.81
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	99.81
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	99.81
d1o89a2	177	Hypothetical protein YhdH {Escherichia coli [TaxId	99.76
d1vj1a2	187	Putative zinc-binding alcohol dehydrogenase {Mouse	99.76
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	99.75
d1tt7a2	167	Hypothetical protein YhfP {Bacillus subtilis [TaxI	99.73
d1o8ca2	77	Hypothetical protein YhdH {Escherichia coli [TaxId	99.49
d1vj1a1	166	Putative zinc-binding alcohol dehydrogenase {Mouse	99.47
d1v3va1	147	Leukotriene b4 12-hydroxydehydrogenase/prostagland	99.37
d1luaa1	191	Methylene-tetrahydromethanopterin dehydrogenase {M	97.75
d2d1ya1	248	Hypothetical protein TTHA0369 {Thermus thermophilu	97.73
d1ydea1	250	Retinal dehydrogenase/reductase 3 {Human (Homo sap	97.63
d1cyda_	242	Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1	97.57
d1pr9a_	244	Carbonyl reductase {Human (Homo sapiens) [TaxId: 9	97.56
d1ulsa_	242	beta-keto acyl carrier protein reductase {Thermus	97.55
d1q7ba_	243	beta-keto acyl carrier protein reductase {Escheric	97.5
d1yb1a_	244	17-beta-hydroxysteroid dehydrogenase type XI {Huma	97.45
d1nffa_	244	Putative oxidoreductase Rv2002 {Mycobacterium tube	97.44
d1k2wa_	256	Sorbitol dehydrogenase {Rhodobacter sphaeroides [T	97.44
d2ae2a_	259	Tropinone reductase {Jimsonweed (Datura stramonium	97.44
d1hdca_	254	3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre	97.42
d1hxha_	253	3beta/17beta hydroxysteroid dehydrogenase {Comamon	97.42
d1ae1a_	258	Tropinone reductase {Jimsonweed (Datura stramonium	97.41
d1bdba_	276	Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Ps	97.39
d1zema1	260	Xylitol dehydrogenase {Gluconobacter oxydans [TaxI	97.39
d1fmca_	255	7-alpha-hydroxysteroid dehydrogenase {Escherichia	97.38
d2ag5a1	245	Dehydrogenase/reductase SDR family member 6, DHRS6	97.38
d1yo6a1	250	Putative carbonyl reductase sniffer {Caenorhabditi	97.37
d1vl8a_	251	Gluconate 5-dehydrogenase {Thermotoga maritima [Ta	97.34
d1dhra_	236	Dihydropteridin reductase (pteridine reductase) {R	97.34
d2bgka1	268	Rhizome secoisolariciresinol dehydrogenase {Mayapp	97.33
d1h5qa_	260	Mannitol dehydrogenase {Mushroom (Agaricus bisporu	97.3
d2gdza1	254	15-hydroxyprostaglandin dehydrogenase, PGDH {Human	97.27
d1xq1a_	259	Tropinone reductase {Thale cress (Arabidopsis thal	97.26
d1zk4a1	251	R-specific alcohol dehydrogenase {Lactobacillus br	97.25
d1xg5a_	257	Putative dehydrogenase ARPG836 (MGC4172) {Human (H	97.25
d2rhca1	257	beta-keto acyl carrier protein reductase {Streptom	97.24
d1iy8a_	258	Levodione reductase {Corynebacterium aquaticum [Ta	97.24
d2c07a1	251	beta-keto acyl carrier protein reductase {Malaria	97.23
d2ew8a1	247	(s)-1-phenylethanol dehydrogenase {Azoarcus sp. eb	97.22
d1geea_	261	Glucose dehydrogenase {Bacillus megaterium [TaxId:	97.22
d1spxa_	264	Glucose dehydrogenase (5l265) {Nematode (Caenorhab	97.2
d2a4ka1	241	beta-keto acyl carrier protein reductase {Thermus	97.2
d1o5ia_	234	beta-keto acyl carrier protein reductase {Thermoto	97.2
d1xhla_	274	Hypothetical protein F25D1.5 {Caenorhabditis elega	97.19
d1xkqa_	272	Hypothetical protein R05D8.7 {Caenorhabditis elega	97.18
d1w6ua_	294	2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H	97.17
d1yxma1	297	Peroxisomal trans 2-enoyl CoA reductase {Human (Ho	97.17
d1sbya1	254	Drosophila alcohol dehydrogenase {Fly (Drosophila	97.16
d1hdoa_	205	Biliverdin IX beta reductase {Human (Homo sapiens)	97.14
d1gz6a_	302	(3R)-hydroxyacyl-CoA dehydrogenase domain of estra	97.1
d1ja9a_	259	1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl	97.08
d1wmaa1	275	Carbonyl reductase/20beta-hydroxysteroid dehydroge	97.06
d1g0oa_	272	1,3,8-trihydroxynaphtalene reductase (THNR, naphto	97.06
d1xu9a_	269	11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom	97.04
d1x1ta1	260	D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas	97.01
d1snya_	248	Carbonyl reductase sniffer {Fruit fly (Drosophila	97.01
d1ulua_	256	Enoyl-ACP reductase {Thermus thermophilus [TaxId:	97.0
d1zmta1	252	Halohydrin dehalogenase HheC {Agrobacterium tumefa	96.99
d1gega_	255	meso-2,3-butanediol dehydrogenase {Klebsiella pneu	96.97
d1ooea_	235	Dihydropteridin reductase (pteridine reductase) {N	96.96
d1uzma1	237	beta-keto acyl carrier protein reductase {Mycobact	96.93
d2fr1a1	259	Erythromycin synthase, eryAI, 1st ketoreductase mo	96.9
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	96.87
d1npya1	167	Shikimate 5-dehydrogenase-like protein HI0607 {Hae	96.85
d1l7da1	183	Nicotinamide nucleotide transhydrogenase dI compon	96.82
d1nyta1	170	Shikimate 5-dehydrogenase AroE {Escherichia coli [	96.8
d2pd4a1	274	Enoyl-ACP reductase {Helicobacter pylori [TaxId: 2	96.79
d1e5qa1	182	Saccharopine reductase {Rice blast fungus (Magnapo	96.54
d1gpja2	159	Glutamyl tRNA-reductase middle domain {Archaeon Me	96.49
d2o23a1	248	Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Ho	96.44
d1edoa_	244	beta-keto acyl carrier protein reductase {Oil seed	96.42
d1qsga_	258	Enoyl-ACP reductase {Escherichia coli [TaxId: 562]	96.37
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	96.04
d2bd0a1	240	Bacterial sepiapterin reductase {Chlorobium tepidu	96.03
d1jg1a_	215	Protein-L-isoaspartyl O-methyltransferase {Archaeo	96.02
d1oaaa_	259	Sepiapterin reductase {Mouse (Mus musculus) [TaxId	95.96
d1p77a1	171	Shikimate 5-dehydrogenase AroE {Haemophilus influe	95.96
d2q46a1	252	Hypothetical protein At5g02240 (T7H20_290) {Thale	95.86
d1dl5a1	213	Protein-L-isoaspartyl O-methyltransferase {Thermot	95.77
d2h7ma1	268	Enoyl-ACP reductase {Mycobacterium tuberculosis, T	95.75
d1vbfa_	224	Protein-L-isoaspartyl O-methyltransferase {Sulfolo	95.74
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	95.74
d1yl7a1	135	Dihydrodipicolinate reductase {Mycobacterium tuber	95.58
d1mxha_	266	Dihydropteridin reductase (pteridine reductase) {T	95.56
d1q0qa2	151	1-deoxy-D-xylulose-5-phosphate reductoisomerase {E	95.55
d1vi2a1	182	Putative shikimate dehydrogenase YdiB {Escherichia	95.55
d1r0ka2	150	1-deoxy-D-xylulose-5-phosphate reductoisomerase {Z	95.54
d2jfga1	93	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	95.33
d1pjqa1	113	Siroheme synthase CysG, domain 1 {Salmonella typhi	95.13
d1y1pa1	342	Aldehyde reductase II {Sporobolomyces salmonicolor	95.02
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	94.88
d1fjha_	257	3-alpha-hydroxysteroid dehydrogenase {Comamonas te	94.86
d1d7oa_	297	Enoyl-ACP reductase {Oil seed rape (Brassica napus	94.84
d1vl0a_	281	DTDP-4-dehydrorhamnose reductase RfbD {Clostridium	94.81
d1n7ha_	339	GDP-mannose 4,6-dehydratase {Thale-cress (Arabidop	94.77
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	94.73
d1rkxa_	356	CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc	94.68
d1jtva_	285	Human estrogenic 17beta-hydroxysteroid dehydrogena	94.65
d1uaya_	241	Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus t	94.57
d1orra_	338	CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId:	94.53
d2nxca1	254	PrmA-like protein TTHA0656 (TT0836) {Thermus therm	94.49
d1i24a_	393	Sulfolipid biosynthesis protein SQD1 {Thale cress	94.48
d1e7wa_	284	Dihydropteridin reductase (pteridine reductase) {L	94.45
d1udca_	338	Uridine diphosphogalactose-4-epimerase (UDP-galact	94.42
d1jaya_	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae	94.25
d1i1na_	224	Protein-L-isoaspartyl O-methyltransferase {Human (	94.13
d1r18a_	223	Protein-L-isoaspartyl O-methyltransferase {Fruit f	94.12
d1c1da1	201	Phenylalanine dehydrogenase {Rhodococcus sp., M4 [	94.09
d1yb2a1	250	Hypothetical protein Ta0852 {Thermoplasma acidophi	94.09
d2bkaa1	232	TAT-interacting protein TIP30 {Human (Homo sapiens	94.02
d1db3a_	357	GDP-mannose 4,6-dehydratase {Escherichia coli [Tax	93.93
d1li4a1	163	S-adenosylhomocystein hydrolase {Human (Homo sapie	93.61
d1z45a2	347	Uridine diphosphogalactose-4-epimerase (UDP-galact	93.59
d1xgka_	350	Negative transcriptional regulator NmrA {Aspergill	93.18
d1rpna_	321	GDP-mannose 4,6-dehydratase {Pseudomonas aeruginos	93.01
d1qyda_	312	Pinoresinol-lariciresinol reductase {Giant arborvi	92.99
d1nvmb1	157	Acetaldehyde dehydrogenase (acylating) {Pseudomona	92.82
d2avna1	246	Hypothetical methyltransferase TM1389 {Thermotoga	92.79
d1qyca_	307	Phenylcoumaran benzylic ether reductase {Loblolly	92.65
d1o54a_	266	Hypothetical protein TM0748 {Thermotoga maritima [	92.48
d1nvta1	177	Shikimate 5-dehydrogenase AroE {Archaeon Methanoco	92.4
d2pv7a2	152	Prephenate dehydrogenase TyrA {Haemophilus influen	92.35
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	92.32
d2blla1	342	Polymyxin resistance protein ArnA (PrmI) {Escheric	92.31
d1nkva_	245	Hypothetical Protein YjhP {Escherichia coli [TaxId	92.29
d1onfa2	117	Glutathione reductase {Plasmodium falciparum [TaxI	92.13
d1yqga2	152	Pyrroline-5-carboxylate reductase ProC {Neisseria	92.02
d2c5aa1	363	GDP-mannose-3', 5'-epimerase {Thale cress (Arabido	91.92
d1nhpa2	123	NADH peroxidase {Enterococcus faecalis [TaxId: 135	91.63
d2b69a1	312	UDP-glucuronate decarboxylase 1 {Human (Homo sapie	90.92
d1mo9a2	121	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	90.82
d1pjza_	201	Thiopurine S-methyltransferase {Pseudomonas syring	90.8
d1ebda2	117	Dihydrolipoamide dehydrogenase {Bacillus stearothe	90.61
d1kjqa2	111	Glycinamide ribonucleotide transformylase PurT, N-	90.58
d1leha1	230	Leucine dehydrogenase {Bacillus sphaericus [TaxId:	90.53
d1t2aa_	347	GDP-mannose 4,6-dehydratase {Human (Homo sapiens)	90.52
d1vpda2	161	Hydroxyisobutyrate dehydrogenase {Salmonella typhi	90.51
d1kpia_	291	CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}	90.42
d1wzna1	251	Hypothetical methyltransferase PH1305 {Archaeon Py	90.41
d3etja2	78	N5-carboxyaminoimidazole ribonucleotide synthetase	90.33
d1susa1	227	Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag	90.3
d1f0ya2	192	Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum	89.98
d1d7ya2	121	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	89.66
d2avda1	219	COMT domain-containing protein 1, COMTD1 {Human (H	89.65
d1l3ia_	186	Precorrin-6Y methyltransferase (CbiT) {Archaeon Me	89.56
d1ks9a2	167	Ketopantoate reductase PanE {Escherichia coli [Tax	89.49
d1gesa2	116	Glutathione reductase {Escherichia coli [TaxId: 56	89.27
d3lada2	119	Dihydrolipoamide dehydrogenase {Azotobacter vinela	89.23
d2czca2	172	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	89.08
d1seza1	373	Protoporphyrinogen oxidase {Tobacco (Nicotiana tab	89.05
d1dxla2	123	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	88.98
d1ps9a3	179	2,4-dienoyl-CoA reductase, middle domain {Escheric	88.9
d1ek6a_	346	Uridine diphosphogalactose-4-epimerase (UDP-galact	88.88
d1p3da1	96	UDP-N-acetylmuramate-alanine ligase MurC {Haemophi	88.81
d1zx0a1	229	Guanidinoacetate methyltransferase {Human (Homo sa	88.72
d1vm6a3	128	Dihydrodipicolinate reductase {Thermotoga maritima	88.57
d1gtea4	196	Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su	88.51
d1i9ga_	264	Probable methyltransferase Rv2118c {Mycobacterium	87.89
d2ahra2	152	Pyrroline-5-carboxylate reductase ProC {Streptococ	87.87
d1kpga_	285	CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}	87.64
d2o57a1	282	Putative sarcosine dimethylglycine methyltransfera	87.53
d1ydwa1	184	Probable oxidoreductase At4g09670 {Thale cress (Ar	87.51
d1n1ea2	189	Glycerol-3- phosphate dehydrogenase {Trypanosome (	87.41
d2voua1	265	Dihydroxypyridine hydroxylase DhpH {Arthrobacter n	87.32
d1p91a_	268	rRNA methyltransferase RlmA {Escherichia coli [Tax	87.24
d1b7go1	178	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	87.04
d1e6ua_	315	GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (	87.03
d1h6va2	122	Mammalian thioredoxin reductase {Rat (Rattus norve	86.87
d1v9la1	242	Glutamate dehydrogenase {Pyrobaculum islandicum [T	86.83
d1j6ua1	89	UDP-N-acetylmuramate-alanine ligase MurC {Thermoto	86.7
d1qp8a1	181	Putative formate dehydrogenase {Archaeon Pyrobacul	86.54
d1dxya1	199	D-2-hydroxyisocaproate dehydrogenase {Lactobacillu	86.5
d1v8ba1	163	S-adenosylhomocystein hydrolase {Plasmodium falcip	86.47
d1n2sa_	298	dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {S	86.46
d1eq2a_	307	ADP-L-glycero-D-mannoheptose 6-epimerase {Escheric	86.41
d1j4aa1	197	D-lactate dehydrogenase {Lactobacillus helveticus	86.23
d1id1a_	153	Rck domain from putative potassium channel Kch {Es	86.23
d1ojta2	125	Dihydrolipoamide dehydrogenase {Neisseria meningit	86.08
d1oi7a1	121	Succinyl-CoA synthetase, alpha-chain, N-terminal (	85.63
d1mx3a1	193	Transcription corepressor CtbP {Human (Homo sapien	85.45
d1wdka3	186	Fatty oxidation complex alpha subunit, middle doma	84.88
d1t4ba1	146	Aspartate beta-semialdehyde dehydrogenase {Escheri	84.64
d1xvaa_	292	Glycine N-methyltransferase {Rat (Rattus norvegicu	84.62
d1v59a2	122	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	84.43
d1i36a2	152	Conserved hypothetical protein MTH1747 {Archaeon M	84.42
d1djqa3	233	Trimethylamine dehydrogenase, middle domain {Methy	84.4
d2bzga1	229	Thiopurine S-methyltransferase {Human (Homo sapien	84.31
d3cuma2	162	Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru	84.2
d1sb8a_	341	UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomo	84.14
d2frna1	260	Hypothetical protein PH0793 {Pyrococcus horikoshii	84.12
d1q1ra2	133	Putidaredoxin reductase {Pseudomonas putida [TaxId	83.78
d1ygya1	184	Phosphoglycerate dehydrogenase {Mycobacterium tube	83.75
d1cf2o1	171	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	83.59
d2iida1	370	L-aminoacid oxidase {Malayan pit viper (Calloselas	83.53
d1kewa_	361	dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus	83.29
d1c0pa1	268	D-aminoacid oxidase, N-terminal domain {Rhodotorul	83.13
d1kyqa1	150	Bifunctional dehydrogenase/ferrochelatase Met8p, N	83.13
d2fk8a1	280	Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri	83.01
d2i76a2	153	Hypothetical protein TM1727 {Thermotoga maritima [	82.59
d2nu7a1	119	Succinyl-CoA synthetase, alpha-chain, N-terminal (	82.36
d1mlda1	144	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	82.26
d3grsa2	125	Glutathione reductase {Human (Homo sapiens) [TaxId	82.14
d2as0a2	324	Hypothetical protein PH1915, middle and C-terminal	82.08
d1diha1	162	Dihydrodipicolinate reductase {Escherichia coli [T	81.97
d2bhsa1	292	O-acetylserine sulfhydrylase (Cysteine synthase) {	81.78
d2pgda2	176	6-phosphogluconate dehydrogenase {Sheep (Ovis orie	81.59
d1lvla2	115	Dihydrolipoamide dehydrogenase {Pseudomonas putida	81.48
d1gdha1	191	D-glycerate dehydrogenase {Hyphomicrobium methylov	81.18
d1euca1	130	Succinyl-CoA synthetase, alpha-chain, N-terminal (	81.17
d1hwxa1	293	Glutamate dehydrogenase {Cow (Bos taurus) [TaxId:	80.76
d1xeaa1	167	Putative oxidoreductase VCA1048 {Vibrio cholerae [	80.74
d1bgva1	255	Glutamate dehydrogenase {Clostridium symbiosum [Ta	80.57
d2naca1	188	Formate dehydrogenase {Pseudomonas sp., strain 101	80.56
d2hjsa1	144	Usg-1 protein homolog PA3116 {Pseudomonas aerugino	80.31
d1mv8a2	202	GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos	80.11

>d1yb5a1 b.35.1.2 (A:6-120,A:295-329) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=6.1e-28  Score=193.07  Aligned_cols=148  Identities=16%  Similarity=0.268  Sum_probs=129.3

Q ss_pred             eeeEeecccCCcceEEecCCCCCCCCCCCCCCCCCCCcEEEEeeeeecChhhHHHHcCCCCCCCCCCCcCCCceeEEEEE
Q psy1959           2 RIDIQCCALNSSDLLLYNGSGDAKPTLPLVPGFEFSGTIIEKKMMTRINSSDLLLYNGSGDAKPTLPLVPGFEFSGTVIE   81 (296)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~evlvkv~~~~i~~~D~~~~~g~~~~~~~~p~~~G~e~~G~V~~   81 (296)
                      |..+.+..+|..+.+.+..   ..|.|.|+++     ||||||.+++||++|.+.+.|.+.....+|.++|||++|+|++
T Consensus         3 MkAv~~~~~G~p~~l~~~~---~~~~P~~~~~-----eVlVkv~a~~i~~~D~~~~~g~~~~~~~~p~i~G~e~~G~V~~   74 (150)
T d1yb5a1           3 MRAVRVFEFGGPEVLKLRS---DIAVPIPKDH-----QVLIKVHACGVNPVETYIRSGTYSRKPLLPYTPGSDVAGVIEA   74 (150)
T ss_dssp             EEEEEESSCSSGGGEEEEE---EEECCCCCTT-----EEEEEEEEEECCHHHHHHHHTCSSCCCCSSBCCCSCEEEEEEE
T ss_pred             eeEEEEEccCCcceEEEEe---ecCCCCCCCC-----eEEEEEEEecCcccchhhhcCCcCccccccccCccceeeeeEe
Confidence            4455566666665555431   2577888899     9999999999999999999998888788899999999999999


Q ss_pred             EccCCCCCCCCCCCCCCCCCCCEEEEecCCCCCcccceEeeeCCceEECCCCCCHHHHhhhccHHHHHHHHHHHHcCCCC
Q psy1959          82 VADTKSSSTEEDDEEDVLQVGDKVLALNKELLHGFSDQCVVHTNDVFKIPEKMTFEHAASLADSYSTAQIVFSRHAKLKE  161 (296)
Q Consensus        82 v~~~~~~~~~~g~~v~~~~~Gd~V~~~~~~~~g~~~~~~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~  161 (296)
                      +          |+++++|++||||++... .+|+|+||++++++.++++|+++++++||+++..+.++|+.+...+..+.
T Consensus        75 v----------G~~v~~~~vGdrV~~~~~-~~G~~ae~~~v~~~~~~~iP~~ls~~~Aa~~~~~~~ta~~~~~~~g~~~~  143 (150)
T d1yb5a1          75 V----------GDNASAFKKGDRVFTSST-ISGGYAEYALAADHTVYKLPEKLKPVIGSQYPLEKVAEAHENIIHGSGAT  143 (150)
T ss_dssp             E----------CTTCTTCCTTCEEEESCC-SSCSSBSEEEEEGGGEEECCTTCCCCEEEEEEGGGHHHHHHHHHHSSCCS
T ss_pred             e----------cceeeccccCcccccccc-ccccccccccccccccccccCCCCHHHHHHhhhhhhhehhhheEEcCccc
Confidence            9          999999999999988654 35999999999999999999999999999999999999999888899999


Q ss_pred             CcEEEEE
Q psy1959         162 KQTVLVT  168 (296)
Q Consensus       162 g~~vlI~  168 (296)
                      |+++||+
T Consensus       144 G~~vliL  150 (150)
T d1yb5a1         144 GKMILLL  150 (150)
T ss_dssp             SEEEEEC
T ss_pred             CCEEEEC
Confidence            9999874

>d1e3ja1 b.35.1.2 (A:4-142,A:313-351) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=99.94  E-value=4.9e-28  Score=199.14  Aligned_cols=141  Identities=19%  Similarity=0.185  Sum_probs=122.3

Q ss_pred             ceEEecCCCCC----CCCCCCCCCCCCCCcEEEEeeeeecChhhHHHHcCCCC--CCCCCCCcCCCceeEEEEEEccCCC
Q psy1959          14 DLLLYNGSGDA----KPTLPLVPGFEFSGTIIEKKMMTRINSSDLLLYNGSGD--AKPTLPLVPGFEFSGTVIEVADTKS   87 (296)
Q Consensus        14 ~~~~~~~~~~~----~~~p~~~~~~~~~~evlvkv~~~~i~~~D~~~~~g~~~--~~~~~p~~~G~e~~G~V~~v~~~~~   87 (296)
                      -+++++++++.    +|.|+|+++     |||||+.+++||++|++.+.+...  ...++|+++|||++|+|+++     
T Consensus         3 maAVl~g~~~l~~~e~~~P~~~~~-----evlVkv~a~gic~sD~~~~~~~~~~~~~~~~p~i~GhE~~G~Vv~v-----   72 (178)
T d1e3ja1           3 LSAVLYKQNDLRLEQRPIPEPKED-----EVLLQMAYVGICGSDVHYYEHGRIADFIVKDPMVIGHEASGTVVKV-----   72 (178)
T ss_dssp             EEEEEEETTEEEEEECCCCCCCTT-----EEEEEEEEEEECHHHHHHHHHSBSSSCBCCSCEECCCEEEEEEEEE-----
T ss_pred             eEEEEEcCCcEEEEEeECCCCCCC-----EEEEEEEEEcccCchhhhhccCccccccccCCeeeccccceEEEec-----
Confidence            34556677766    788889999     999999999999999998876432  23467899999999999999     


Q ss_pred             CCCCCCCCCCCCCCCCEEEEecC--------------------------CCCCcccceEeeeCCceEECCCCCCHHHHhh
Q psy1959          88 SSTEEDDEEDVLQVGDKVLALNK--------------------------ELLHGFSDQCVVHTNDVFKIPEKMTFEHAAS  141 (296)
Q Consensus        88 ~~~~~g~~v~~~~~Gd~V~~~~~--------------------------~~~g~~~~~~~v~~~~~~~iP~~~~~~~aa~  141 (296)
                           |+++++|++||||+....                          ..+|+|+||+++|+++++++|++++++++|+
T Consensus        73 -----G~~v~~~~~GdrV~~~~~~~~~~c~~c~~g~~~~c~~~~~~~~~~~~G~~aey~~v~~~~~~~iP~~~~~~~aa~  147 (178)
T d1e3ja1          73 -----GKNVKHLKKGDRVAVEPGVPCRRCQFCKEGKYNLCPDLTFCATPPDDGNLARYYVHAADFCHKLPDNCNVKQLVT  147 (178)
T ss_dssp             -----CTTCCSCCTTCEEEECCEECCSSSHHHHTTCGGGCTTCEETTBTTBCCSCBSEEEEEGGGEEECCTTCCCGGGEE
T ss_pred             -----CcccCCCCCCCEEEECcccccCCccccccCCccccccccceeccccccccceeeeecccceeeCCCCCCHHHHHH
Confidence                 999999999999986421                          2358999999999999999999999999999


Q ss_pred             hccHHHHHHHHHHHHcCCCCCcEEEEEcC
Q psy1959         142 LADSYSTAQIVFSRHAKLKEKQTVLVTAA  170 (296)
Q Consensus       142 l~~~~~ta~~~l~~~~~~~~g~~vlI~Ga  170 (296)
                      ++.++.|||+++ +.+++++|++|+|+|+
T Consensus       148 ~~~~~~ta~~a~-~~~~~~~g~~VlVig~  175 (178)
T d1e3ja1         148 HSFKLEQTVDAF-EAARKKADNTIKVMIS  175 (178)
T ss_dssp             EEEEGGGHHHHH-HHHHHCCTTCSEEEEE
T ss_pred             HHhHHHHHHHHH-HHhCCCCCCEEEEEcc
Confidence            999999999998 6789999999999985

>d1llua1 b.35.1.2 (A:2-143,A:310-342) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.94  E-value=1.8e-26  Score=189.22  Aligned_cols=140  Identities=21%  Similarity=0.226  Sum_probs=123.6

Q ss_pred             CcceEEecCCCCC-----CCCCCCCCCCCCCCcEEEEeeeeecChhhHHHHcCCCCCCCCCCCcCCCceeEEEEEEccCC
Q psy1959          12 SSDLLLYNGSGDA-----KPTLPLVPGFEFSGTIIEKKMMTRINSSDLLLYNGSGDAKPTLPLVPGFEFSGTVIEVADTK   86 (296)
Q Consensus        12 ~~~~~~~~~~~~~-----~~~p~~~~~~~~~~evlvkv~~~~i~~~D~~~~~g~~~~~~~~p~~~G~e~~G~V~~v~~~~   86 (296)
                      +|||++++++++.     .|.|.|+++     ||||||.+++||++|++.++|.++....+|.++|||++|+|+++    
T Consensus         5 tMkA~v~~~~g~pl~l~evp~P~~~~~-----evlVkv~a~gic~~D~~~~~G~~~~~~~~P~i~GhE~~G~V~~~----   75 (175)
T d1llua1           5 TMKAAVVHAYGAPLRIEEVKVPLPGPG-----QVLVKIEASGVCHTDLHAAEGDWPVKPPLPFIPGHEGVGYVAAV----   75 (175)
T ss_dssp             EEEEEEBCSTTSCCEEEEEECCCCCTT-----CEEEEEEEEECCHHHHHHHHTCSSSCCCSSBCCCSCEEEEEEEE----
T ss_pred             hcEEEEEEeCCCCCEEEEeECCCCCCC-----EEEEEEEEecCcccchhhhccCccccccCCcCCCCcceEEEEEe----
Confidence            7999999998774     788889999     99999999999999999999998877788999999999999999    


Q ss_pred             CCCCCCCCCCCCCCCCCEEEEecC--------------------------CCCCcccceEeeeCCceEECCCCCCHHHHh
Q psy1959          87 SSSTEEDDEEDVLQVGDKVLALNK--------------------------ELLHGFSDQCVVHTNDVFKIPEKMTFEHAA  140 (296)
Q Consensus        87 ~~~~~~g~~v~~~~~Gd~V~~~~~--------------------------~~~g~~~~~~~v~~~~~~~iP~~~~~~~aa  140 (296)
                            |++++++++||||.....                          ..+|+|+||+.+++++++++|++++++.++
T Consensus        76 ------G~~v~~~~~GdrV~~~~~~~~~g~~~~~~~g~~~~~~~~~~~G~~~~gg~aey~~v~~~~~~~iPd~l~~~~a~  149 (175)
T d1llua1          76 ------GSGVTRVKEGDRVGIPWLYTACGCCEHCLTGWETLCESQQNTGYSVNGGYAEYVLADPNYVGILPKNVKATIHP  149 (175)
T ss_dssp             ------CTTCCSCCTTCEEEECSEEECCSSSHHHHTTCGGGCTTCEEBTTTBCCSSBSEEEECTTTSEECCTTCCCCEEE
T ss_pred             ------CCCccccccCCEEEeccccccCCccccccCCcccccccccccccccccccceEEEechHHEEECCCCCChhHHH
Confidence                  999999999999985310                          235899999999999999999999998888


Q ss_pred             hhccHHHHHHHHHHHHcCCCCCcEEEEE
Q psy1959         141 SLADSYSTAQIVFSRHAKLKEKQTVLVT  168 (296)
Q Consensus       141 ~l~~~~~ta~~~l~~~~~~~~g~~vlI~  168 (296)
                      ++..++.+++..+ +. ...+|++|||+
T Consensus       150 ~~~~~~~t~~~~~-~~-g~~~G~~VLVl  175 (175)
T d1llua1         150 GKLDDINQILDQM-RA-GQIEGRIVLEM  175 (175)
T ss_dssp             ECGGGHHHHHHHH-HT-TCCSSEEEEEC
T ss_pred             HHHhHHHHHHHHH-Hh-CCCCCCEEEeC
Confidence            8888999999987 43 44579999984

>d1qora1 b.35.1.2 (A:2-112,A:292-327) Quinone oxidoreductase {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]

Probab=99.93  E-value=6.6e-26  Score=180.55  Aligned_cols=143  Identities=16%  Similarity=0.180  Sum_probs=123.3

Q ss_pred             eeEeecccCCcceEEecCCCCCCCCCCCCCCCCCCCcEEEEeeeeecChhhHHHHcCCCCCCCCCCCcCCCceeEEEEEE
Q psy1959           3 IDIQCCALNSSDLLLYNGSGDAKPTLPLVPGFEFSGTIIEKKMMTRINSSDLLLYNGSGDAKPTLPLVPGFEFSGTVIEV   82 (296)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~evlvkv~~~~i~~~D~~~~~g~~~~~~~~p~~~G~e~~G~V~~v   82 (296)
                      .+|....+|.++.+.+.    ..|.|.|.++     ||+|||.|++||++|++.+.|.++. ..+|.++|||++|+|+++
T Consensus         2 ~~i~~~~~G~pe~l~~~----e~~~P~p~~~-----eVlVkv~a~~in~~D~~~~~G~~~~-~~~p~~~G~e~~G~V~~v   71 (147)
T d1qora1           2 TRIEFHKHGGPEVLQAV----EFTPADPAEN-----EIQVENKAIGINFIDTYIRSGLYPP-PSLPSGLGTEAAGIVSKV   71 (147)
T ss_dssp             EEEEBSSCCSGGGCEEE----ECCCCCCCTT-----EEEEEEEEEECCHHHHHHHHTSSCC-SSSSBCCCSCEEEEEEEE
T ss_pred             eEEEEcccCCCceeEEE----EecCCCCCCC-----EEEEEEEEecccceeeeeecCCCCC-Ccceeeeccccccceeee
Confidence            47888889988888877    4778888999     9999999999999999999998764 578999999999999999


Q ss_pred             ccCCCCCCCCCCCCCCCCCCCEEEEecCCCCCcccceEeeeCCceEECCCCCCHHHH--hhhccHHHHHHHHHHHHcCCC
Q psy1959          83 ADTKSSSTEEDDEEDVLQVGDKVLALNKELLHGFSDQCVVHTNDVFKIPEKMTFEHA--ASLADSYSTAQIVFSRHAKLK  160 (296)
Q Consensus        83 ~~~~~~~~~~g~~v~~~~~Gd~V~~~~~~~~g~~~~~~~v~~~~~~~iP~~~~~~~a--a~l~~~~~ta~~~l~~~~~~~  160 (296)
                                |+++++|++||||+.... ..|+|+||++++.+.++++|++++++.+  ++++....++++++. ..+++
T Consensus        72 ----------G~~v~~~~vGdrV~~~~~-~~G~~ae~~~v~~~~~~~~P~~~~~~~a~a~~~~~~~~~~~~~l~-~~~~~  139 (147)
T d1qora1          72 ----------GSGVKHIKAGDRVVYAQS-ALGAYSSVHNIIADKAAILPAAIKVDVAEQQKYPLKDAQRAHEIL-ESRAT  139 (147)
T ss_dssp             ----------CTTCCSCCTTCEEEESCC-SSCCSBSEEEEEGGGEEECCTTSCCCCCGGGEEEGGGHHHHHHHH-HTTCC
T ss_pred             ----------eeecccccccceeeeecc-ccccceeEEEEehHHeEEcCcccchHHHHHHHHHHHHHHHHHHHH-HhCCC
Confidence                      999999999999986543 2599999999999999999999987644  455667778887774 47899


Q ss_pred             CCcEEEE
Q psy1959         161 EKQTVLV  167 (296)
Q Consensus       161 ~g~~vlI  167 (296)
                      +|++|||
T Consensus       140 ~G~~VLI  146 (147)
T d1qora1         140 QGSSLLI  146 (147)
T ss_dssp             CBCCEEE
T ss_pred             CCCEEEe
Confidence            9999997

>d1cdoa1 b.35.1.2 (A:1-164,A:340-374) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=99.93  E-value=3.7e-26  Score=191.02  Aligned_cols=141  Identities=20%  Similarity=0.114  Sum_probs=125.8

Q ss_pred             CcceEEecCCCCC-----CCCCCCCCCCCCCCcEEEEeeeeecChhhHHHHcCCCCCCCCCCCcCCCceeEEEEEEccCC
Q psy1959          12 SSDLLLYNGSGDA-----KPTLPLVPGFEFSGTIIEKKMMTRINSSDLLLYNGSGDAKPTLPLVPGFEFSGTVIEVADTK   86 (296)
Q Consensus        12 ~~~~~~~~~~~~~-----~~~p~~~~~~~~~~evlvkv~~~~i~~~D~~~~~g~~~~~~~~p~~~G~e~~G~V~~v~~~~   86 (296)
                      ++||+++++++.+     +|.|.|+++     ||||||.++|||++|++.+.|.... ..+|.++|||++|+|+++    
T Consensus         8 ~~kAav~~~~~~pl~i~ev~~P~p~~~-----eVlIkv~a~giCgsD~~~~~g~~~~-~~~p~i~GhE~~G~v~~v----   77 (199)
T d1cdoa1           8 KCKAAVAWEANKPLVIEEIEVDVPHAN-----EIRIKIIATGVCHTDLYHLFEGKHK-DGFPVVLGHEGAGIVESV----   77 (199)
T ss_dssp             EEEEEEBCSTTSCCEEEEEEECCCCTT-----EEEEEEEEEECCHHHHHHHHTTCCT-TSCSEECCCCEEEEEEEE----
T ss_pred             EEEEEEEecCCCCcEEEEEECCCCCCC-----EEEEEEEEEEEecchhhhhhhcccc-cccccccccccceEEEEE----
Confidence            5679999988865     778888999     9999999999999999999986543 567999999999999999    


Q ss_pred             CCCCCCCCCCCCCCCCCEEEEecCC----------------------------------------------CCCcccceE
Q psy1959          87 SSSTEEDDEEDVLQVGDKVLALNKE----------------------------------------------LLHGFSDQC  120 (296)
Q Consensus        87 ~~~~~~g~~v~~~~~Gd~V~~~~~~----------------------------------------------~~g~~~~~~  120 (296)
                            |+++.++++||||+.....                                              ..|+|+||+
T Consensus        78 ------G~~v~~~~~GdrV~~~~~~~cg~c~~C~~g~~~~C~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~Ggfaey~  151 (199)
T d1cdoa1          78 ------GPGVTEFQPGEKVIPLFISQCGECRFCQSPKTNQCVKGWANESPDVMSPKETRFTCKGRKVLQFLGTSTFSQYT  151 (199)
T ss_dssp             ------CTTCCSCCTTCEEEECSSCCCSSSHHHHCTTCCCCSCSGGGTCTTTTSCSCCCEEETTEEEEEGGGTCCSBSEE
T ss_pred             ------cCCCceecCCCEEEEeeeccccccccccCCCcccccccccccccccccCcccceeeccceeecccccCCceEEE
Confidence                  9999999999999864220                                              138999999


Q ss_pred             eeeCCceEECCCCCCHHHHhhhccHHHHHHHHHHHHcCCCCCcEEEEE
Q psy1959         121 VVHTNDVFKIPEKMTFEHAASLADSYSTAQIVFSRHAKLKEKQTVLVT  168 (296)
Q Consensus       121 ~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vlI~  168 (296)
                      ++++++++++|++++++++|++.+++.|++.++......+.|++|||+
T Consensus       152 ~v~~~~~~~iP~~~~~~~aa~l~~~l~t~~~av~~~~~~~~G~tVlv~  199 (199)
T d1cdoa1         152 VVNQIAVAKIDPSVKLDEFITHRMPLESVNDAIDLMKHGKCIRTVLSL  199 (199)
T ss_dssp             EEEGGGEEECCTTSCCGGGEEEEEEGGGHHHHHHHHHTTCCSEEEEEC
T ss_pred             EEchHHEEECCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCCCEEEeC
Confidence            999999999999999999999999999999999888899999999984

>d1h2ba1 b.35.1.2 (A:17-154,A:327-359) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=99.93  E-value=6.1e-26  Score=185.25  Aligned_cols=137  Identities=20%  Similarity=0.229  Sum_probs=118.1

Q ss_pred             ceEEecCCCCC-----CCCCCC-CCCCCCCCcEEEEeeeeecChhhHHHHcCCCCC--CCCCCCcCCCceeEEEEEEccC
Q psy1959          14 DLLLYNGSGDA-----KPTLPL-VPGFEFSGTIIEKKMMTRINSSDLLLYNGSGDA--KPTLPLVPGFEFSGTVIEVADT   85 (296)
Q Consensus        14 ~~~~~~~~~~~-----~~~p~~-~~~~~~~~evlvkv~~~~i~~~D~~~~~g~~~~--~~~~p~~~G~e~~G~V~~v~~~   85 (296)
                      ||+++++.+++     +|.|++ .++     |||||+.+++||++|++.+.|.+..  .+.+|+++|||++|+|+++   
T Consensus         1 kA~~~~~~g~pl~i~~v~~P~~~~~~-----eVlVkv~a~gic~sD~~~~~g~~~~~~~~~~P~v~GhE~~G~V~~v---   72 (171)
T d1h2ba1           1 KAARLHEYNKPLRIEDVDYPRLEGRF-----DVIVRIAGAGVCHTDLHLVQGMWHELLQPKLPYTLGHENVGYIEEV---   72 (171)
T ss_dssp             CEEEESSTTSCCEEECCCCCCCBTTB-----CEEEEEEEEECCHHHHHHHHTTTHHHHCCCSSEECCCCEEEEEEEE---
T ss_pred             CEEEEEeCCCCCEEEEeeCCCCCCCC-----EEEEEEEecccceeeehccCCCcccccCCccccccceeeeeeeecc---
Confidence            57778877764     566654 467     9999999999999999999987642  3467999999999999999   


Q ss_pred             CCCCCCCCCCCCCCCCCCEEEEecC-------------------------CCCCcccceEeeeCCceEECCCCCCHHHHh
Q psy1959          86 KSSSTEEDDEEDVLQVGDKVLALNK-------------------------ELLHGFSDQCVVHTNDVFKIPEKMTFEHAA  140 (296)
Q Consensus        86 ~~~~~~~g~~v~~~~~Gd~V~~~~~-------------------------~~~g~~~~~~~v~~~~~~~iP~~~~~~~aa  140 (296)
                             |++++++++||||+....                         ...|+|+||+.++++.++++|++++++.++
T Consensus        73 -------G~~v~~~~~GdrV~~~~~~~cg~~~~c~~g~~~~c~~~~~~g~~~~G~~aey~~v~~~~~~~iP~~~~~e~aa  145 (171)
T d1h2ba1          73 -------AEGVEGLEKGDPVILHPAVTDGTCLACRAGEDMHCENLEFPGLNIDGGFAEFMRTSHRSVIKLPKDVRVEVDI  145 (171)
T ss_dssp             -------CTTCCSCCTTCEEEECSCBCCSCSHHHHTTCGGGCTTCBCBTTTBCCSSBSEEEECGGGEEECCTTCCCCEEE
T ss_pred             -------cCCCCcCCCCCEEEEcCccCCCCcccccccccccccccccceeecccccceeeeehhhcceecCCCCCHHHHH
Confidence                   999999999999997432                         235899999999999999999999998888


Q ss_pred             hhccHHHHHHHHHHHHcCCCCCcEEEE
Q psy1959         141 SLADSYSTAQIVFSRHAKLKEKQTVLV  167 (296)
Q Consensus       141 ~l~~~~~ta~~~l~~~~~~~~g~~vlI  167 (296)
                      ++..++.|||+++ +.+++ .|++|||
T Consensus       146 ~~~~~~~ta~~al-~~~~~-~G~~VlI  170 (171)
T d1h2ba1         146 HKLDEINDVLERL-EKGEV-LGRAVLI  170 (171)
T ss_dssp             EEGGGHHHHHHHH-HTTCC-SSEEEEE
T ss_pred             HHHhHHHHHHHHH-HhcCC-CCCEEEe
Confidence            8899999999999 56788 8999997

>d1rjwa1 b.35.1.2 (A:1-137,A:306-339) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.93  E-value=1.9e-25  Score=182.25  Aligned_cols=139  Identities=22%  Similarity=0.298  Sum_probs=117.6

Q ss_pred             cceEEecCCCCC-----CCCCCCCCCCCCCCcEEEEeeeeecChhhHHHHcCCCCCCCCCCCcCCCceeEEEEEEccCCC
Q psy1959          13 SDLLLYNGSGDA-----KPTLPLVPGFEFSGTIIEKKMMTRINSSDLLLYNGSGDAKPTLPLVPGFEFSGTVIEVADTKS   87 (296)
Q Consensus        13 ~~~~~~~~~~~~-----~~~p~~~~~~~~~~evlvkv~~~~i~~~D~~~~~g~~~~~~~~p~~~G~e~~G~V~~v~~~~~   87 (296)
                      |||+++++.++.     +|.|+|.++     ||||||++++||++|++.+++.+.....+|.++|||++|+|+++     
T Consensus         1 MkA~v~~~~g~pl~i~~v~~P~~~~~-----eVlVkv~a~gic~sD~~~~~~~~~~~~~~p~v~GhE~~G~Vv~v-----   70 (171)
T d1rjwa1           1 MKAAVVEQFKEPLKIKEVEKPTISYG-----EVLVRIKACGVCHTDLHAAHGDWPVKPKLPLIPGHEGVGIVEEV-----   70 (171)
T ss_dssp             CEEEEBSSTTSCCEEEECCCCCCCTT-----EEEEEEEEEEECHHHHHHHHTCSSSCCCSSBCCCSCEEEEEEEE-----
T ss_pred             CeEEEEecCCCCcEEEEeECCCCCCC-----eEEEEEEEeeccccceeeeecccccccccccccCCEEEEEEEEe-----
Confidence            789999987774     788888999     99999999999999999998877666788999999999999999     


Q ss_pred             CCCCCCCCCCCCCCCCEEEEecC--------------------------CCCCcccceEeeeCCceEECCCCCCHHHHhh
Q psy1959          88 SSTEEDDEEDVLQVGDKVLALNK--------------------------ELLHGFSDQCVVHTNDVFKIPEKMTFEHAAS  141 (296)
Q Consensus        88 ~~~~~g~~v~~~~~Gd~V~~~~~--------------------------~~~g~~~~~~~v~~~~~~~iP~~~~~~~aa~  141 (296)
                           |++++++++||||+....                          ..+|+|+||+++++++++++|++++++.|+ 
T Consensus        71 -----G~~v~~~~vGdrV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~G~~aey~~v~~~~~~~iP~~~~~e~A~-  144 (171)
T d1rjwa1          71 -----GPGVTHLKVGDRVGIPWLYSACGHCDYCLSGQETLCEHQKNAGYSVDGGYAEYCRAAADYVVKIPDNTIIEVQP-  144 (171)
T ss_dssp             -----CTTCCSCCTTCEEEECSEEECCSCSHHHHTTCGGGCTTCEEBTTTBCCSSBSEEEEEGGGCEECCTTCCEEEEE-
T ss_pred             -----cccccCceeeeEEeeccccccccccccccCCCccccccccccceeccCccccceEecHHHEEECCCCCCHHHHH-
Confidence                 999999999999985221                          235899999999999999999999986554 


Q ss_pred             hccHHHHHHHHHHHHcCCCCCcEEEEEcC
Q psy1959         142 LADSYSTAQIVFSRHAKLKEKQTVLVTAA  170 (296)
Q Consensus       142 l~~~~~ta~~~l~~~~~~~~g~~vlI~Ga  170 (296)
                      | ....++++.+ ..+.+ +|++|||+|.
T Consensus       145 l-~~~~~~~~~~-~~~~~-~G~tVlViG~  170 (171)
T d1rjwa1         145 L-EKINEVFDRM-LKGQI-NGRVVLTLED  170 (171)
T ss_dssp             G-GGHHHHHHHH-HTTCC-SSEEEEECCC
T ss_pred             H-HHHHHHHHHH-HhcCC-CCCEEEEeCC
Confidence            5 3566777776 34555 5999999985

>d2fzwa1 b.35.1.2 (A:1-162,A:339-373) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=99.92  E-value=1.2e-25  Score=187.59  Aligned_cols=143  Identities=20%  Similarity=0.195  Sum_probs=126.7

Q ss_pred             cCCcceEEecCCCCC-----CCCCCCCCCCCCCCcEEEEeeeeecChhhHHHHcCCCCCCCCCCCcCCCceeEEEEEEcc
Q psy1959          10 LNSSDLLLYNGSGDA-----KPTLPLVPGFEFSGTIIEKKMMTRINSSDLLLYNGSGDAKPTLPLVPGFEFSGTVIEVAD   84 (296)
Q Consensus        10 ~~~~~~~~~~~~~~~-----~~~p~~~~~~~~~~evlvkv~~~~i~~~D~~~~~g~~~~~~~~p~~~G~e~~G~V~~v~~   84 (296)
                      +=+|||++++++++.     +|.|+|+++     ||||||.++|||++|+++++|.+.. ..+|.++|||++|+|+++  
T Consensus         4 ~~~~kAav~~~~g~~l~i~evp~P~p~~~-----eVLVkv~a~gic~sD~~~~~G~~~~-~~~p~v~GhE~~G~V~~v--   75 (197)
T d2fzwa1           4 VIKCKAAVAWEAGKPLSIEEIEVAPPKAH-----EVRIKIIATAVCHTDAYTLSGADPE-GCFPVILGHLGAGIVESV--   75 (197)
T ss_dssp             CEEEEEEEBCSTTSCCEEEEEEECCCCTT-----EEEEEEEEEECCHHHHHHHHTCCTT-CCSSBCCCCEEEEEEEEE--
T ss_pred             ceEEEEEEEccCCCCCEEEEEECCCCCCC-----EEEEEEEEecCCCCcHHHHcCCccc-ccccccCCcceeeEEEee--
Confidence            446899999999886     788999999     9999999999999999999997654 568999999999999999  


Q ss_pred             CCCCCCCCCCCCCCCCCCCEEEEecC------------------------------C----------------CCCcccc
Q psy1959          85 TKSSSTEEDDEEDVLQVGDKVLALNK------------------------------E----------------LLHGFSD  118 (296)
Q Consensus        85 ~~~~~~~~g~~v~~~~~Gd~V~~~~~------------------------------~----------------~~g~~~~  118 (296)
                              |++|+.+++||||+....                              +                ..|+|+|
T Consensus        76 --------G~~V~~~~~GdrV~v~~~~~cg~c~~c~~g~~~~C~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~g~GgfAe  147 (197)
T d2fzwa1          76 --------GEGVTKLKAGDTVIPLYIPQCGECKFCLNPKTNLCQKIRVTQGKGLMPDGTSRFTCKGKTILHYMGTSTFSE  147 (197)
T ss_dssp             --------CTTCCSCCTTCEEEECSSCCCSCSHHHHCTTCCCCCTTHHHHHTTCCTTSCCSEEETTEEEBCCTTTCCSBS
T ss_pred             --------cCCceecCCCCEEEEccccccccccccccCccccCccccccccccccCCccceeccCCcceeccccccccee
Confidence                    999999999999986421                              0                0289999


Q ss_pred             eEeeeCCceEECCCCCCHHHHhhhccHHHHHHHHHHHHcCCCCCcEEEEE
Q psy1959         119 QCVVHTNDVFKIPEKMTFEHAASLADSYSTAQIVFSRHAKLKEKQTVLVT  168 (296)
Q Consensus       119 ~~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vlI~  168 (296)
                      |+++++..++++|++++.+++|++.+++.+++.++.++..-+.+++|+|+
T Consensus       148 y~vvp~~~~~~vp~~l~~~~aa~~~~~~~t~~~a~~~~~~g~~~~tvvvi  197 (197)
T d2fzwa1         148 YTVVADISVAKIDPLIKVDEFVTHNLSFDEINKAFELMHSGKSIRTVVKI  197 (197)
T ss_dssp             EEEEEGGGEEECCTTSCSGGGEEEEEEGGGHHHHHHHHHHTCCSEEEEEC
T ss_pred             EEEechHHEEECCCCCCHHHHhhhhhHHHHHHHHHHhccCCCcCCEEEeC
Confidence            99999999999999999999999999999999999776667789999874

>d1xa0a1 b.35.1.2 (A:1-118,A:295-328) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: B. subtilis YhfP homologue
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.92  E-value=6e-26  Score=181.80  Aligned_cols=141  Identities=20%  Similarity=0.294  Sum_probs=122.7

Q ss_pred             cCCcceEEecCCCCC-------CCCCCCCCCCCCCCcEEEEeeeeecChhhHHHHcCCCCCCCCCCCcCCCceeEEEEEE
Q psy1959          10 LNSSDLLLYNGSGDA-------KPTLPLVPGFEFSGTIIEKKMMTRINSSDLLLYNGSGDAKPTLPLVPGFEFSGTVIEV   82 (296)
Q Consensus        10 ~~~~~~~~~~~~~~~-------~~~p~~~~~~~~~~evlvkv~~~~i~~~D~~~~~g~~~~~~~~p~~~G~e~~G~V~~v   82 (296)
                      |.+|||+++++.++.       .|.|+|+++     ||||||.++|||++|++.+.|.++....+|+++|+|++|+|++.
T Consensus         1 m~~~KA~v~~~~~~~~~~~i~~v~~P~~~~~-----eVlVkV~a~gin~~D~~~~~g~~~~~~~~p~v~g~e~~G~v~~~   75 (152)
T d1xa0a1           1 MSAFQAFVVNKTETEFTAGVQTISMDDLPEG-----DVLVRVHYSSVNYKDGLASIPDGKIVKTYPFVPGIDLAGVVVSS   75 (152)
T ss_dssp             CCEEEEEEEEEETTEEEEEEEEEEGGGSCSC-----SEEEEEEEEECCHHHHHHTSGGGSSCCSSSBCCCSEEEEEEEEC
T ss_pred             CCceEEEEEEecCCceEEEEEEccCCCCCCC-----EEEEEEEEeCCChHHHHHHhhcccccccccceeeeeeeeeeecc
Confidence            567899998887763       778888999     99999999999999999999988877788999999999999986


Q ss_pred             ccCCCCCCCCCCCCCCCCCCCEEEEecCC----CCCcccceEeeeCCceEECCCCCCHHHHhhhccHHHHHHHHHHHHcC
Q psy1959          83 ADTKSSSTEEDDEEDVLQVGDKVLALNKE----LLHGFSDQCVVHTNDVFKIPEKMTFEHAASLADSYSTAQIVFSRHAK  158 (296)
Q Consensus        83 ~~~~~~~~~~g~~v~~~~~Gd~V~~~~~~----~~g~~~~~~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~l~~~~~  158 (296)
                                  .+..+++||+|++....    .+|+|+||+++|++.++++|++++. ++|+++++..|||.++....+
T Consensus        76 ------------~~~~~~~g~~v~~~~~~~~~~~~G~~aEy~~v~~~~~~~iP~~l~~-~aa~l~~a~~ta~~~~~~~~~  142 (152)
T d1xa0a1          76 ------------QHPRFREGDEVIATGYEIGVTHFGGYSEYARLHGEWLVPLPKGLER-IAQEISLAELPQALKRILRGE  142 (152)
T ss_dssp             ------------CSSSCCTTCEEEEESTTBTTTBCCSSBSEEEECGGGCEECCTTHHH-HEEEEEGGGHHHHHHHHHHTC
T ss_pred             ------------CCCccccCCEEEEecCccccccCCCcceeeeehhhccccCCCCCCH-HHHHHHHHHHHHHHHHHHhcC
Confidence                        35679999999987542    3599999999999999999999984 678898998999888878888


Q ss_pred             CCCCcEEEEEc
Q psy1959         159 LKEKQTVLVTA  169 (296)
Q Consensus       159 ~~~g~~vlI~G  169 (296)
                      ++ |++|||+|
T Consensus       143 ~~-G~tVL~l~  152 (152)
T d1xa0a1         143 LR-GRTVVRLA  152 (152)
T ss_dssp             CC-SEEEEECC
T ss_pred             CC-CCEEEEcC
Confidence            85 99999975

>d1piwa1 b.35.1.2 (A:1-152,A:321-360) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.92  E-value=2.9e-25  Score=184.30  Aligned_cols=140  Identities=20%  Similarity=0.192  Sum_probs=116.5

Q ss_pred             CcceEEecCCCCC-------CCCCCCCCCCCCCCcEEEEeeeeecChhhHHHHcCCCCCCCCCCCcCCCceeEEEEEEcc
Q psy1959          12 SSDLLLYNGSGDA-------KPTLPLVPGFEFSGTIIEKKMMTRINSSDLLLYNGSGDAKPTLPLVPGFEFSGTVIEVAD   84 (296)
Q Consensus        12 ~~~~~~~~~~~~~-------~~~p~~~~~~~~~~evlvkv~~~~i~~~D~~~~~g~~~~~~~~p~~~G~e~~G~V~~v~~   84 (296)
                      +|++++++++++.       .+.++++|+     |||||+.++|||++|++.+.|.++. ..+|+++|||++|+|+++  
T Consensus         6 ~~ka~~~~~~~~~~~~~~~~~~p~p~~~~-----eVlVkv~a~giC~sDl~~~~g~~~~-~~~P~i~GHE~~G~Vv~v--   77 (192)
T d1piwa1           6 KFEGIAIQSHEDWKNPKKTKYDPKPFYDH-----DIDIKIEACGVCGSDIHCAAGHWGN-MKMPLVVGHEIVGKVVKL--   77 (192)
T ss_dssp             CEEEEEECCSSSTTSCEEEEECCCCCCTT-----EEEEEEEEEEECHHHHHHHTTTTSC-CCSSEECCCCEEEEEEEE--
T ss_pred             eeEEEEEeCCCcCCcceEeeccCCCCCCC-----eEEEEEeeeCCCcchHHHHcCCCCC-CCCCcCcccccccchhhc--
Confidence            7888999887765       233346778     9999999999999999999998764 578999999999999999  


Q ss_pred             CCCCCCCCCCCC-CCCCCCCEEEEecC---------------------------------CCCCcccceEeeeCCceEEC
Q psy1959          85 TKSSSTEEDDEE-DVLQVGDKVLALNK---------------------------------ELLHGFSDQCVVHTNDVFKI  130 (296)
Q Consensus        85 ~~~~~~~~g~~v-~~~~~Gd~V~~~~~---------------------------------~~~g~~~~~~~v~~~~~~~i  130 (296)
                              |+++ +.+++||||.....                                 ..+|+|+||+++++++++++
T Consensus        78 --------G~~v~~~~k~GdrV~~~~~~~~c~~c~~c~~g~~~~C~~~~~~~~~~~~~G~~~~Ggfaey~~v~~~~~~~i  149 (192)
T d1piwa1          78 --------GPKSNSGLKVGQRVGVGAQVFSCLECDRCKNDNEPYCTKFVTTYSQPYEDGYVSQGGYANYVRVHEHFVVPI  149 (192)
T ss_dssp             --------CTTCCSSCCTTCEEEECSEEECCSCSHHHHTTCGGGCTTCEESSSCBCTTSCBCCCSSBSEEEEEGGGEEEC
T ss_pred             --------ccccccccCCCCeeeEeeeccCCCCchhhhcCCcccccccccccccccccccccccceeeEEEeehHHeEEC
Confidence                    8887 56999999963210                                 12589999999999999999


Q ss_pred             CCCCCHHHHhhhccHHHHHHHHHHHHcCCCCCcEEEEE
Q psy1959         131 PEKMTFEHAASLADSYSTAQIVFSRHAKLKEKQTVLVT  168 (296)
Q Consensus       131 P~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vlI~  168 (296)
                      |++++++.|+.+...+.+||+++ +.+++++|++|+|+
T Consensus       150 P~~l~~e~Aal~~~~~~ta~~~l-~~~~vk~g~~Vvv~  186 (192)
T d1piwa1         150 PENIWVETLPVGEAGVHEAFERM-EKGDVRYRFTLVGY  186 (192)
T ss_dssp             CTTCCEEEEESSHHHHHHHHHHH-HHTCCSSEEEEECC
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHH-HHhCCCCCCEEEEE
Confidence            99999987664433477999999 67999999999985

>d1iz0a1 b.35.1.2 (A:1-98,A:270-302) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

Probab=99.92  E-value=2.2e-25  Score=173.81  Aligned_cols=126  Identities=17%  Similarity=0.226  Sum_probs=111.7

Q ss_pred             cceEEecCCCCC-----CCCCCCCCCCCCCCcEEEEeeeeecChhhHHHHcCCCCCCCCCCCcCCCceeEEEEEEccCCC
Q psy1959          13 SDLLLYNGSGDA-----KPTLPLVPGFEFSGTIIEKKMMTRINSSDLLLYNGSGDAKPTLPLVPGFEFSGTVIEVADTKS   87 (296)
Q Consensus        13 ~~~~~~~~~~~~-----~~~p~~~~~~~~~~evlvkv~~~~i~~~D~~~~~g~~~~~~~~p~~~G~e~~G~V~~v~~~~~   87 (296)
                      ||++++++.++.     .+.|.|+++     ||+||+.+++||++|++.++|.+.....+|+++|||++|+|        
T Consensus         1 MkA~~~~~~G~~l~~~e~~~p~p~~~-----eVlVkv~a~gin~~D~~~~~G~~~~~~~~P~v~G~E~~G~V--------   67 (131)
T d1iz0a1           1 MKAWVLKRLGGPLELVDLPEPEAEEG-----EVVLRVEAVGLNFADHLMRLGAYLTRLHPPFIPGMEVVGVV--------   67 (131)
T ss_dssp             CEEEEECSTTSCEEEEECCCCCCCTT-----EEEEEEEEEEECHHHHHHHHTCSSSCCCSSBCCCCEEEEEE--------
T ss_pred             CcEEEEccCCCCCEEEEccCCCCCCC-----EEEEEEEEEeccccccccccccccccccceeEeeeeeEEee--------
Confidence            667777776654     778888899     99999999999999999999998887789999999999996        


Q ss_pred             CCCCCCCCCCCCCCCCEEEEecCCCCCcccceEeeeCCceEECCCCCCHHHHhhhccHHHHHHHHHHHHcCCCCCcEEEE
Q psy1959          88 SSTEEDDEEDVLQVGDKVLALNKELLHGFSDQCVVHTNDVFKIPEKMTFEHAASLADSYSTAQIVFSRHAKLKEKQTVLV  167 (296)
Q Consensus        88 ~~~~~g~~v~~~~~Gd~V~~~~~~~~g~~~~~~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vlI  167 (296)
                                   +||+|+++..  +|+|+||++++++.++++|+++++++||+++..+.|||+++.+.+  +.|++||+
T Consensus        68 -------------vGd~V~~~~~--~G~~aey~~v~~~~~~~~P~~~~~~~aa~~~~~~~Ta~~al~~~g--~~g~tvl~  130 (131)
T d1iz0a1          68 -------------EGRRYAALVP--QGGLAERVAVPKGALLPLPEGRPVVGPVFPFAEAEAAFRALLDRG--HTGKVVVR  130 (131)
T ss_dssp             -------------TTEEEEEECS--SCCSBSEEEEEGGGCEECCTTCCCEEEEEEGGGHHHHHHHTTCTT--CCBEEEEE
T ss_pred             -------------ccceEEEEec--cCccceeeeeCHHHeEEccCCCCHHHHHHHHHHHHHHHHHHHhcc--cCCCEEEE
Confidence                         2899998877  799999999999999999999999999999999999999996655  46999886


Q ss_pred             E
Q psy1959         168 T  168 (296)
Q Consensus       168 ~  168 (296)
                      +
T Consensus       131 l  131 (131)
T d1iz0a1         131 L  131 (131)
T ss_dssp             C
T ss_pred             C
Confidence            3

>d1pl8a1 b.35.1.2 (A:1-145,A:317-356) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=2.7e-25  Score=183.70  Aligned_cols=142  Identities=20%  Similarity=0.176  Sum_probs=119.5

Q ss_pred             ccCCcceEEecCCCCC----CCCCCCCCCCCCCCcEEEEeeeeecChhhHHHHcCCCC--CCCCCCCcCCCceeEEEEEE
Q psy1959           9 ALNSSDLLLYNGSGDA----KPTLPLVPGFEFSGTIIEKKMMTRINSSDLLLYNGSGD--AKPTLPLVPGFEFSGTVIEV   82 (296)
Q Consensus         9 ~~~~~~~~~~~~~~~~----~~~p~~~~~~~~~~evlvkv~~~~i~~~D~~~~~g~~~--~~~~~p~~~G~e~~G~V~~v   82 (296)
                      +.+.+.+++++++++.    +|.|+|.++     ||||||.+++||++|++.+++...  ....+|+++|||++|+|+++
T Consensus         4 ~~p~~~a~V~~gp~~l~l~evp~P~p~~~-----eVlVkv~a~gic~sD~~~~~~~~~~~~~~~~p~i~GhE~~G~V~~v   78 (185)
T d1pl8a1           4 AKPNNLSLVVHGPGDLRLENYPIPEPGPN-----EVLLRMHSVGICGSDVHYWEYGRIGNFIVKKPMVLGHEASGTVEKV   78 (185)
T ss_dssp             CCCCCEEEEEEETTEEEEEECCCCCCCTT-----EEEEEEEEEEECHHHHHHHHHSEETTEECSSCEECCCEEEEEEEEE
T ss_pred             CCCCCEEEEEeCCCeEEEEEeECCCCCCC-----EEEEEEEEEEeeCchhhhhccccccccCCCCCeeeeeeeeeeEEEe
Confidence            5678899999999886    788888889     999999999999999999875321  23467899999999999999


Q ss_pred             ccCCCCCCCCCCCCCCCCCCCEEEEecC--------------------------CCCCcccceEeeeCCceEECCCCCCH
Q psy1959          83 ADTKSSSTEEDDEEDVLQVGDKVLALNK--------------------------ELLHGFSDQCVVHTNDVFKIPEKMTF  136 (296)
Q Consensus        83 ~~~~~~~~~~g~~v~~~~~Gd~V~~~~~--------------------------~~~g~~~~~~~v~~~~~~~iP~~~~~  136 (296)
                                |+++.+|++||||+....                          ..+|+|+||++++.++++++|+++++
T Consensus        79 ----------G~~v~~~~~GdrV~~~~~~~cg~c~~c~~G~~~~c~~~~~~g~~~~~G~~aey~~~~~~~~~~lP~~~~~  148 (185)
T d1pl8a1          79 ----------GSSVKHLKPGDRVAIEPGAPRENDEFCKMGRYNLSPSIFFCATPPDDGNLCRFYKHNAAFCYKLPDNVKP  148 (185)
T ss_dssp             ----------CTTCCSCCTTCEEEECSEECSSCCHHHHTTCGGGCTTCEETTBTTBCCSCBSEEEEEGGGEEECCTTCGG
T ss_pred             ----------ccceeeecccccceecceeccccchhhccchhchhccceeeecccccccceEEEEEchHHEEECCCCCCH
Confidence                      999999999999986421                          23588999999999999999999999


Q ss_pred             HHHhhhccHHHHHHHHHHHHcCCCCCcEEEEE
Q psy1959         137 EHAASLADSYSTAQIVFSRHAKLKEKQTVLVT  168 (296)
Q Consensus       137 ~~aa~l~~~~~ta~~~l~~~~~~~~g~~vlI~  168 (296)
                      ++++.+  ++.+|++++ +..++++|++|+|.
T Consensus       149 ~~aa~~--pl~~a~~a~-~~~~~~~G~~VlIg  177 (185)
T d1pl8a1         149 LVTHRF--PLEKALEAF-ETFKKGLGLKIMLK  177 (185)
T ss_dssp             GEEEEE--EGGGHHHHH-HHHHTTCCSEEEEE
T ss_pred             HHHHHH--HHHHHHHHH-HHhCCCCCCEEEEE
Confidence            987654  455677777 56678999999983

>d1e3ia1 b.35.1.2 (A:1-167,A:342-376) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=99.92  E-value=2.4e-25  Score=186.54  Aligned_cols=138  Identities=16%  Similarity=0.217  Sum_probs=121.0

Q ss_pred             CcceEEecCCCCC-----CCCCCCCCCCCCCCcEEEEeeeeecChhhHHHHcCCCCCCCCCCCcCCCceeEEEEEEccCC
Q psy1959          12 SSDLLLYNGSGDA-----KPTLPLVPGFEFSGTIIEKKMMTRINSSDLLLYNGSGDAKPTLPLVPGFEFSGTVIEVADTK   86 (296)
Q Consensus        12 ~~~~~~~~~~~~~-----~~~p~~~~~~~~~~evlvkv~~~~i~~~D~~~~~g~~~~~~~~p~~~G~e~~G~V~~v~~~~   86 (296)
                      +|||+++++++++     +|.|+|+++     ||||||.++|||++|++.++|.++  ..+|+++|||++|+|+++    
T Consensus         8 ~~KAaV~~~~g~pl~i~evp~P~p~~g-----eVlVkv~a~gic~sD~~~~~G~~~--~~~P~v~GHE~~G~V~~v----   76 (202)
T d1e3ia1           8 KCKAAIAWKTGSPLCIEEIEVSPPKAC-----EVRIQVIATCVCPTDINATDPKKK--ALFPVVLGHECAGIVESV----   76 (202)
T ss_dssp             EEEEEEBCSTTSCCEEEEEEECCCCTT-----EEEEEEEEEECCHHHHHTTCTTSC--CCSSBCCCCEEEEEEEEE----
T ss_pred             EEEEEEEccCCCCCEEEEEECCCCCCC-----EEEEEEEEEEEeccccceeeeecc--cccccccccccceEEeee----
Confidence            6899999998875     688889999     999999999999999999999775  467999999999999999    


Q ss_pred             CCCCCCCCCCCCCCCCCEEEEecCC--------------------------------------------------CCCcc
Q psy1959          87 SSSTEEDDEEDVLQVGDKVLALNKE--------------------------------------------------LLHGF  116 (296)
Q Consensus        87 ~~~~~~g~~v~~~~~Gd~V~~~~~~--------------------------------------------------~~g~~  116 (296)
                            |++|+++++||||+.....                                                  ..|+|
T Consensus        77 ------G~~V~~~~~GdrV~~~~~~~c~~c~~c~~g~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~G~f  150 (202)
T d1e3ia1          77 ------GPGVTNFKPGDKVIPFFAPQCKRCKLCLSPLTNLCGKLRNFKYPTIDQELMEDRTSRFTCKGRSIYHFMGVSSF  150 (202)
T ss_dssp             ------CTTCCSCCTTCEEEECSSCCCSSSHHHHCTTCCCCTTCCCSSCGGGSSCSCTTSCCSEEETTEEEBCCTTTCCS
T ss_pred             ------cCCceeccCCCEEEEEeeccccccccccCCcccccccccccccCccceecccccccccccCceeeecccccCCc
Confidence                  9999999999999864310                                                  02899


Q ss_pred             cceEeeeCCceEECCCCCCHHHHhhhccHHHHHHHHHHHHcCCCCCcEEEEEc
Q psy1959         117 SDQCVVHTNDVFKIPEKMTFEHAASLADSYSTAQIVFSRHAKLKEKQTVLVTA  169 (296)
Q Consensus       117 ~~~~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vlI~G  169 (296)
                      +||+++++.+++++|++++++.++++.+++.+++.++..   +++|++|.|+.
T Consensus       151 aey~~v~~~~l~~lP~~~~~~~~~~~~~~~~~~~~a~~~---~k~G~~V~vi~  200 (202)
T d1e3ia1         151 SQYTVVSEANLARVDDEFDLDLLVTHALPFESINDAIDL---MKEGKSIRTIL  200 (202)
T ss_dssp             BSEEEEEGGGEEECCTTSCGGGGEEEEEEGGGHHHHHHH---HHTTCCSEEEE
T ss_pred             eEEEEEehhhEEECCCCCCHHHHHHHHHHHHHHHHHHHh---CCCCCEEEEEE
Confidence            999999999999999999999888888999999888743   46899998764

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=1.7e-24  Score=177.03  Aligned_cols=142  Identities=23%  Similarity=0.380  Sum_probs=130.4

Q ss_pred             CCHHHHhhhccHHHHHHHHHHHHcCCCCCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCcEEEE
Q psy1959         134 MTFEHAASLADSYSTAQIVFSRHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALT  213 (296)
Q Consensus       134 ~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~~~~~  213 (296)
                      +|+++||+++++++|||++|.+.+++++|++|||+|++|++|++++|+| +.+|++|++++++++|.++++++|++.+++
T Consensus         1 ls~~~AA~l~~~~~TA~~al~~~~~~~~g~~VlV~Ga~G~vG~~aiq~a-~~~G~~vi~~~~~~~~~~~~~~~Ga~~vi~   79 (174)
T d1yb5a2           1 LDFKQGAAIGIPYFTAYRALIHSACVKAGESVLVHGASGGVGLAACQIA-RAYGLKILGTAGTEEGQKIVLQNGAHEVFN   79 (174)
T ss_dssp             SCHHHHTTTHHHHHHHHHHHHTTSCCCTTCEEEEETCSSHHHHHHHHHH-HHTTCEEEEEESSHHHHHHHHHTTCSEEEE
T ss_pred             CCHHHHHHhHHHHHHHHHHHHHHhCCCCCCEEEEEeccccccccccccc-cccCcccccccccccccccccccCcccccc
Confidence            5899999999999999999988899999999999999999999999999 779999999999999999999999999999


Q ss_pred             cCCchhHHHHHHHHhCCCcccEEEECCCCccHHHHHHHhhccCceEE---------eecccceeeeeEEecccc
Q psy1959         214 FTNEKSLVNKVLEVSGGKYANVVFEAVGGEDKTDLIRQKGAWAALTF---------TNEKSLVNKVLEVSGGKY  278 (296)
Q Consensus       214 ~~~~~~~~~~i~~~~~~~g~d~vld~~g~~~~~~~~~~lg~~~g~~~---------~~~~~~~~k~~~i~g~~~  278 (296)
                      +++ .++.+.+++.++++++|+++|++|++.++.+++++ +++|++.         ++...++.|++++.|+..
T Consensus        80 ~~~-~~~~~~i~~~t~~~g~d~v~d~~g~~~~~~~~~~l-~~~G~iv~~G~~~~~~~~~~~~~~k~~~i~g~~~  151 (174)
T d1yb5a2          80 HRE-VNYIDKIKKYVGEKGIDIIIEMLANVNLSKDLSLL-SHGGRVIVVGSRGTIEINPRDTMAKESSIIGVTL  151 (174)
T ss_dssp             TTS-TTHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHE-EEEEEEEECCCCSCEEECTHHHHTTTCEEEECCG
T ss_pred             ccc-ccHHHHhhhhhccCCceEEeecccHHHHHHHHhcc-CCCCEEEEEecCCCCCCCHHHHHHCCCEEEEEEe
Confidence            988 89999999999999999999999999999999999 7777663         455677889999998863

>d1vj0a1 b.35.1.2 (A:2-155,A:338-367) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=99.90  E-value=2.5e-24  Score=177.26  Aligned_cols=135  Identities=21%  Similarity=0.345  Sum_probs=114.0

Q ss_pred             CcceEEecCCCCC-----CCCCCCCCCCCCCCcEEEEeeeeecChhhHHHHcCCCCCCCCCCCcCCCceeEEEEEEccCC
Q psy1959          12 SSDLLLYNGSGDA-----KPTLPLVPGFEFSGTIIEKKMMTRINSSDLLLYNGSGDAKPTLPLVPGFEFSGTVIEVADTK   86 (296)
Q Consensus        12 ~~~~~~~~~~~~~-----~~~p~~~~~~~~~~evlvkv~~~~i~~~D~~~~~g~~~~~~~~p~~~G~e~~G~V~~v~~~~   86 (296)
                      +|+|++++++++.     +|.|+|+++     ||||||.++|||++|+++++|.++. .++|+++|||++|+|+++    
T Consensus         4 k~kA~v~~~~~~pl~i~ev~~P~~~~~-----evlVkv~a~gIC~sD~~~~~G~~~~-~~~P~vlGHE~~G~V~~v----   73 (184)
T d1vj0a1           4 KAHAMVLEKFNQPLVYKEFEISDIPRG-----SILVEILSAGVCGSDVHMFRGEDPR-VPLPIILGHEGAGRVVEV----   73 (184)
T ss_dssp             EEEEEEBCSTTSCCEEEEEEECCCCTT-----CEEEEEEEEEECHHHHHHHTTCCTT-CCSSBCCCCEEEEEEEEE----
T ss_pred             eEEEEEEecCCCCcEEEEeeCCCCCCC-----EEEEEEEEECCCCCchhheeccCCc-cccccccceeeeeeeeEE----
Confidence            5789999998874     688889999     9999999999999999999998764 468999999999999999    


Q ss_pred             CCCCCCCCCCC-----CCCCCCEEEEecC----------------------------------CCCCcccceEeee-CCc
Q psy1959          87 SSSTEEDDEED-----VLQVGDKVLALNK----------------------------------ELLHGFSDQCVVH-TND  126 (296)
Q Consensus        87 ~~~~~~g~~v~-----~~~~Gd~V~~~~~----------------------------------~~~g~~~~~~~v~-~~~  126 (296)
                            |++|.     .+++||+|+....                                  +.+|+|+||++++ ..+
T Consensus        74 ------G~~v~~~~~~~~~~Gd~V~~~~~~~Cg~C~~C~~g~~~~~c~~~~~~G~~~~~~~~~~~~Gg~ae~~~v~~~~~  147 (184)
T d1vj0a1          74 ------NGEKRDLNGELLKPGDLIVWNRGITCGECYWCKVSKEPYLCPNRKVYGINRGCSEYPHLRGCYSSHIVLDPETD  147 (184)
T ss_dssp             ------SSCCBCTTSCBCCTTCEEEECSEECCSSSHHHHTSCCGGGCTTCEETTTTCCSSSTTCCCSSSBSEEEECTTCC
T ss_pred             ------eccccccccccccceeeeEeccccccccChhHhCccccccCCCceeeccCCCCCCCCCcceeCcCcEEechhHc
Confidence                  77664     5789999985321                                  1368999999996 579


Q ss_pred             eEECCCCCCHHHHhhhccHHHHHHHHHHHHcCCCCCcEEEEEc
Q psy1959         127 VFKIPEKMTFEHAASLADSYSTAQIVFSRHAKLKEKQTVLVTA  169 (296)
Q Consensus       127 ~~~iP~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vlI~G  169 (296)
                      ++++|++++++      .++.+|++++ +.+++++|++|+|+.
T Consensus       148 v~~ip~~l~~~------~pl~~A~~a~-~~~~~~~G~~VlI~~  183 (184)
T d1vj0a1         148 VLKVSEKITHR------LPLKEANKAL-ELMESREALKVILYP  183 (184)
T ss_dssp             EEEECTTCCEE------EEGGGHHHHH-HHHHHTSCSCEEEEC
T ss_pred             EEECCCCCCHH------HHHHHHHHHH-HHhCCCcCCEEEEee
Confidence            99999999854      3456788888 678999999999985

>d1jvba1 b.35.1.2 (A:1-143,A:314-347) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=99.90  E-value=5.6e-24  Score=174.43  Aligned_cols=138  Identities=17%  Similarity=0.126  Sum_probs=113.7

Q ss_pred             cceEEecCCCCC-----CCCCCCCCCCCCCCcEEEEeeeeecChhhHHHHcCCCC-------CCCCCCCcCCCceeEEEE
Q psy1959          13 SDLLLYNGSGDA-----KPTLPLVPGFEFSGTIIEKKMMTRINSSDLLLYNGSGD-------AKPTLPLVPGFEFSGTVI   80 (296)
Q Consensus        13 ~~~~~~~~~~~~-----~~~p~~~~~~~~~~evlvkv~~~~i~~~D~~~~~g~~~-------~~~~~p~~~G~e~~G~V~   80 (296)
                      |||++++++++.     +|.|+|+++     |||||+.+++||++|+++++|.++       ...++|+++|||++|+|+
T Consensus         1 MKA~~~~~~G~pl~i~dv~~P~p~~~-----eVlVkv~a~gic~~D~~~~~G~~~~~~~~~~~~~~~P~v~GhE~~G~V~   75 (177)
T d1jvba1           1 MRAVRLVEIGKPLSLQEIGVPKPKGP-----QVLIKVEAAGVCHSDVHMRQGRFGNLRIVEDLGVKLPVTLGHEIAGKIE   75 (177)
T ss_dssp             CEEEEECSTTSCCEEEECCCCCCCTT-----CEEEEEEEEEECTHHHHHTTTEETTEETTTTTCCCSCEECCCEEEEEEE
T ss_pred             CeEEEEEeCCCCCEEEEeeCCCCCCC-----EEEEEEEEEecccceeeeecCcccccccccccccCCCccccceEEEEEe
Confidence            788888888764     788888899     999999999999999999998753       234789999999999999


Q ss_pred             EEccCCCCCCCCCCCCCCCCCCCEEEEecC-------------------------CCCCcccceEeeeCC-ceEECCCCC
Q psy1959          81 EVADTKSSSTEEDDEEDVLQVGDKVLALNK-------------------------ELLHGFSDQCVVHTN-DVFKIPEKM  134 (296)
Q Consensus        81 ~v~~~~~~~~~~g~~v~~~~~Gd~V~~~~~-------------------------~~~g~~~~~~~v~~~-~~~~iP~~~  134 (296)
                      ++          |+.+.++++||||+....                         +.+|+|+||++++.. .++++|+..
T Consensus        76 ~~----------g~~v~~~~~GdrV~~~~~~~c~~c~~~~~g~~~~c~~~~~~g~~~~G~~aey~~vp~~~~~~~~~~~~  145 (177)
T d1jvba1          76 EV----------GDEVVGYSKGDLVAVNPWQGEGNCYYCRIGEEHLCDSPRWLGINFDGAYAEYVIVPHYKYMYKLRRVK  145 (177)
T ss_dssp             EE----------CTTCCSCCTTCEEEECCEECCSSSHHHHTTCGGGCSSCEEBTTTBCCSSBSEEEESCGGGEEECSSSC
T ss_pred             ee----------ccCccccccCceEeeeeccccccccccccccccccCCcceeeeccccccccEEEEEhHHeEEECCCCC
Confidence            99          999999999999986431                         234899999999765 567777766


Q ss_pred             CHHHHhhhccHHHHHHHHHHHHcCCCCCcEEEE
Q psy1959         135 TFEHAASLADSYSTAQIVFSRHAKLKEKQTVLV  167 (296)
Q Consensus       135 ~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vlI  167 (296)
                      +.+.++.+..++.++++++ +.+++ .|++|||
T Consensus       146 ~~~~a~~~~~~~~~a~~~~-~~~~~-~G~~VlI  176 (177)
T d1jvba1         146 PMITKTMKLEEANEAIDNL-ENFKA-IGRQVLI  176 (177)
T ss_dssp             CCCEEEEEGGGHHHHHHHH-HTTCC-CSEEEEE
T ss_pred             hHHHHHHHHHHHHHHHHHH-Hhhcc-cCCceEC
Confidence            6655555567899999998 56666 5899987

>d1f8fa1 b.35.1.2 (A:4-162,A:337-371) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=99.90  E-value=1e-23  Score=175.21  Aligned_cols=139  Identities=22%  Similarity=0.210  Sum_probs=116.2

Q ss_pred             CCcceEEecCCCCC-----CCCCCCCCCCCCCCcEEEEeeeeecChhhHHHHcCCCCCCCCCCCcCCCceeEEEEEEccC
Q psy1959          11 NSSDLLLYNGSGDA-----KPTLPLVPGFEFSGTIIEKKMMTRINSSDLLLYNGSGDAKPTLPLVPGFEFSGTVIEVADT   85 (296)
Q Consensus        11 ~~~~~~~~~~~~~~-----~~~p~~~~~~~~~~evlvkv~~~~i~~~D~~~~~g~~~~~~~~p~~~G~e~~G~V~~v~~~   85 (296)
                      -+|+++++.+++++     +|.|+|+++     |||||+.+++||++|++++.|.++  .++|+++|||++|+|+++   
T Consensus         2 k~~~Aav~~~~g~~l~l~~v~~P~p~~g-----eVlVkv~a~gic~sD~~~~~G~~~--~~~P~i~GHE~~G~V~~v---   71 (194)
T d1f8fa1           2 KDIIAAVTPCKGADFELQALKIRQPQGD-----EVLVKVVATGMCHTDLIVRDQKYP--VPLPAVLGHEGSGIIEAI---   71 (194)
T ss_dssp             EEEEEEEBCSTTCCCEEEEEEECCCCTT-----EEEEEEEEEECCHHHHHHHTTSSC--CCSSBCCCCEEEEEEEEE---
T ss_pred             ceeEEEEEcCCCCCcEEEEeeCCCCCCC-----EEEEEEEEEEecCchHhhhhhccc--ccCCcccccceEEEeeec---
Confidence            46788899888875     688889999     999999999999999999999876  457999999999999999   


Q ss_pred             CCCCCCCCCCCCCCCCCCEEEEecC----------------------C-------------------------CCCcccc
Q psy1959          86 KSSSTEEDDEEDVLQVGDKVLALNK----------------------E-------------------------LLHGFSD  118 (296)
Q Consensus        86 ~~~~~~~g~~v~~~~~Gd~V~~~~~----------------------~-------------------------~~g~~~~  118 (296)
                             |+++++|++||||+....                      .                         ..|+|+|
T Consensus        72 -------G~~v~~~~vGDrVv~~~~~Cg~C~~C~~g~~~~C~~~~~~~~~g~~~dg~~~~~~~~~~~~~~~~~~~g~fae  144 (194)
T d1f8fa1          72 -------GPNVTELQVGDHVVLSYGYCGKCTQCNTGNPAYCSEFFGRNFSGADSEGNHALCTHDQGVVNDHFFAQSSFAT  144 (194)
T ss_dssp             -------CTTCCSCCTTCEEEECCCCCSSSHHHHTTCGGGCTTHHHHSSSSSCSSSCCSBC------CBCCGGGTCCSBS
T ss_pred             -------CccceeEccCceeeeecccccCChhhhCCCcccccccccceeccccccceeeeecCCceeeccccccccccce
Confidence                   999999999999975210                      0                         0268999


Q ss_pred             eEeeeCCceEECCCCCCHHHHhhhccHHHHHHHHHHHHcCCCCCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEE
Q psy1959         119 QCVVHTNDVFKIPEKMTFEHAASLADSYSTAQIVFSRHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGV  193 (296)
Q Consensus       119 ~~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~  193 (296)
                      |.+++..+++++|++++++++                         +++.|+ |++|++++|+| +.++++.++.
T Consensus       145 ~~~v~~~~~~~ip~~i~~~~~-------------------------~~i~g~-g~~g~~aiq~a-~~~g~~~iia  192 (194)
T d1f8fa1         145 YALSRENNTVKVTKDFPFDQL-------------------------VKFYAF-DEINQAAIDSR-KGITLKPIIK  192 (194)
T ss_dssp             EEEEEGGGEEEECTTCCGGGG-------------------------EEEEEG-GGHHHHHHHHH-HTSCSEEEEE
T ss_pred             eEEEehHHEEECCCCCCcccE-------------------------EEEeCc-HHHHHHHHHHH-HHcCCCEEEE
Confidence            999999999999999886543                         344564 99999999999 6788865544

>d1kola1 b.35.1.2 (A:2-160,A:356-397) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=99.90  E-value=1.1e-26  Score=194.18  Aligned_cols=153  Identities=24%  Similarity=0.276  Sum_probs=122.8

Q ss_pred             CcceEEecCCCCC----CCCCC-------CCCCCCCCCcEEEEeeeeecChhhHHHHcCCCCCCCCCCCcCCCceeEEEE
Q psy1959          12 SSDLLLYNGSGDA----KPTLP-------LVPGFEFSGTIIEKKMMTRINSSDLLLYNGSGDAKPTLPLVPGFEFSGTVI   80 (296)
Q Consensus        12 ~~~~~~~~~~~~~----~~~p~-------~~~~~~~~~evlvkv~~~~i~~~D~~~~~g~~~~~~~~p~~~G~e~~G~V~   80 (296)
                      .+|+++|+++++.    +|.|+       |.++     ||+|||.+++||++|+++++|.++  ..+|+++|||++|+|+
T Consensus         1 ~~kA~v~~~~~~le~~e~~~P~~~~p~~~p~~~-----eVlVkv~a~giC~sDl~~~~G~~~--~~~P~v~GHE~~G~Vv   73 (201)
T d1kola1           1 GNRGVVYLGSGKVEVQKIDYPKMQDPRGKKIEH-----GVILKVVSTNICGSDQHMVRGRTT--AQVGLVLGHEITGEVI   73 (201)
T ss_dssp             CEEEEEEEETTEEEEEEECCCCSBCTTSCBCSS-----CEEEEEEEEECCHHHHHHHTTCSC--CCTTCBCCCCEEEEEE
T ss_pred             CcEEEEEeCCCceEEEEecCCcccCCCCCCCCC-----EEEEEEEEEEEcchhhhhhcCCcc--cccceeccceeeeeee
Confidence            3688999998877    44443       3456     999999999999999999999876  4579999999999999


Q ss_pred             EEccCCCCCCCCCCCCCCCCCCCEEEEecC-----------------------------------CCCCcccceEeeeCC
Q psy1959          81 EVADTKSSSTEEDDEEDVLQVGDKVLALNK-----------------------------------ELLHGFSDQCVVHTN  125 (296)
Q Consensus        81 ~v~~~~~~~~~~g~~v~~~~~Gd~V~~~~~-----------------------------------~~~g~~~~~~~v~~~  125 (296)
                      ++          |++|++|++||||+....                                   +.+|+|+||+++|..
T Consensus        74 ~v----------G~~V~~~~vGdrV~v~~~~~Cg~C~~C~~g~~~~~~~~~~~~~~~~~g~~~~~~~~Gg~aeyv~vp~~  143 (201)
T d1kola1          74 EK----------GRDVENLQIGDLVSVPFNVACGRCRSCKEMHTGVCLTVNPARAGGAYGYVDMGDWTGGQAEYVLVPYA  143 (201)
T ss_dssp             EE----------CTTCCSCCTTCEEECCSEECCSSSHHHHTTCGGGCSSSCSSSSCEEBTCTTSCCBCCCSBSEEEESSH
T ss_pred             cc----------ccccccccccceeEEeeeeeccCChhhhCCCcccccccccccccccccccCCCccccccccEEEeehH
Confidence            99          999999999999974210                                   235899999999863


Q ss_pred             --ceEECCCCCCHHHHhhhccHHHHHHHHHHHHcCCCCCcEEEEEcCCCcHHHHHHHHHHHhCCC
Q psy1959         126 --DVFKIPEKMTFEHAASLADSYSTAQIVFSRHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKA  188 (296)
Q Consensus       126 --~~~~iP~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~  188 (296)
                        ++++||++.+..+++++..++.++++++ ...+.+.++    +|+ |++|++++|+| |++|+
T Consensus       144 ~~~l~~iPd~~~~~~~~~~~~~~~~~~~a~-~~~~~~~g~----~g~-G~vG~~~i~~a-k~~GA  201 (201)
T d1kola1         144 DFNLLKLPDRDKAMEKINIAEVVGVQVISL-DDAPRGYGE----FDA-GVPKKFVIDPH-KTFSA  201 (201)
T ss_dssp             HHHCEECSCHHHHHHTCCHHHHHTEEEECG-GGHHHHHHH----HHH-TCSCEEEECTT-CSSCC
T ss_pred             HCeEEECCCCCChHHHHHHHHHHHHHHHHH-HhCCCCCeE----Eee-CHHHHHHHHHH-HHcCC
Confidence              6999999877777777878888877776 334444443    476 99999999999 77775

>d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]

Probab=99.89  E-value=7.1e-23  Score=167.78  Aligned_cols=124  Identities=28%  Similarity=0.459  Sum_probs=117.1

Q ss_pred             CCHHHHhhhccHHHHHHHHHHHHcCCCCCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCcEEEE
Q psy1959         134 MTFEHAASLADSYSTAQIVFSRHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALT  213 (296)
Q Consensus       134 ~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~~~~~  213 (296)
                      +|+++||+++++++|||++|.+.+++++|++|+|+|++|++|++++|+| +..|++|++++++++|.++++++|++.+++
T Consensus         1 isfe~AA~~~~~~~TA~~al~~~~~l~~g~~Vlv~ga~g~vG~~~iqla-k~~Ga~Vi~~~~s~~k~~~~~~lGa~~vi~   79 (179)
T d1qora2           1 ISFEQAAASFLKGLTVYYLLRKTYEIKPDEQFLFHAAAGGVGLIACQWA-KALGAKLIGTVGTAQKAQSALKAGAWQVIN   79 (179)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHTTSCCCTTCEEEESSTTBHHHHHHHHHH-HHHTCEEEEEESSHHHHHHHHHHTCSEEEE
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHhCCCCCCEEEEEccccccchHHHHHH-HHhCCeEeecccchHHHHHHHhcCCeEEEE
Confidence            5899999999999999999988899999999999999999999999999 678999999999999999999999999999


Q ss_pred             cCCchhHHHHHHHHhCCCcccEEEECCCCccHHHHHHHhhccCceEE
Q psy1959         214 FTNEKSLVNKVLEVSGGKYANVVFEAVGGEDKTDLIRQKGAWAALTF  260 (296)
Q Consensus       214 ~~~~~~~~~~i~~~~~~~g~d~vld~~g~~~~~~~~~~lg~~~g~~~  260 (296)
                      +++ .++.+.++++++++++|+++|++|++.+..+++++ +++|++.
T Consensus        80 ~~~-~d~~~~v~~~t~g~g~d~v~d~~g~~~~~~~~~~l-~~~G~~v  124 (179)
T d1qora2          80 YRE-EDLVERLKEITGGKKVRVVYDSVGRDTWERSLDCL-QRRGLMV  124 (179)
T ss_dssp             TTT-SCHHHHHHHHTTTCCEEEEEECSCGGGHHHHHHTE-EEEEEEE
T ss_pred             CCC-CCHHHHHHHHhCCCCeEEEEeCccHHHHHHHHHHH-hcCCeee
Confidence            988 89999999999999999999999999999999999 7777663

>d1o89a1 b.35.1.2 (A:1-115,A:293-323) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=99.89  E-value=3.6e-23  Score=164.12  Aligned_cols=124  Identities=20%  Similarity=0.305  Sum_probs=107.4

Q ss_pred             cceEEecCCCCC-------CCCCCCCCCCCCCCcEEEEeeeeecChhhHHHHcCCCCCCCCCCCcCCCceeEEEEEEccC
Q psy1959          13 SDLLLYNGSGDA-------KPTLPLVPGFEFSGTIIEKKMMTRINSSDLLLYNGSGDAKPTLPLVPGFEFSGTVIEVADT   85 (296)
Q Consensus        13 ~~~~~~~~~~~~-------~~~p~~~~~~~~~~evlvkv~~~~i~~~D~~~~~g~~~~~~~~p~~~G~e~~G~V~~v~~~   85 (296)
                      |||+++.+.+..       .+.|+|+++     ||+|||.|++||++|.+...|.+.....+|+++|+|++|+|+++   
T Consensus         1 MkA~v~~~~~~~~~l~i~~v~~p~~~~g-----eVlVkV~a~gin~~D~~~~~G~~~~~~~~p~v~G~e~~G~V~~~---   72 (146)
T d1o89a1           1 LQALLLEQQDGKTLASVQTLDESRLPEG-----DVTVDVHWSSLNYKDALAITGKGKIIRNFPMIPGIDFAGTVRTS---   72 (146)
T ss_dssp             CEEEEEECC---CEEEEEECCGGGSCSC-----SEEEEEEEEECCHHHHHHHHTCSSCCCSSSBCCCSEEEEEEEEE---
T ss_pred             CeEEEEEcCCCceEEEEEEcCCCCCCCC-----EEEEEEeeccCccceeeEEEeecccccccceeccccccccceee---
Confidence            778888776654       778888899     99999999999999999999998877788999999999999999   


Q ss_pred             CCCCCCCCCCCCCCCCCCEEEEecCC----CCCcccceEeeeCCceEECCCCCCHHHHhhhccHHHHHHHHH
Q psy1959          86 KSSSTEEDDEEDVLQVGDKVLALNKE----LLHGFSDQCVVHTNDVFKIPEKMTFEHAASLADSYSTAQIVF  153 (296)
Q Consensus        86 ~~~~~~~g~~v~~~~~Gd~V~~~~~~----~~g~~~~~~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~l  153 (296)
                             |.  ..+++||+|......    .+|+|+||+++|+++++++|+++|+++||+++.++.||+..+
T Consensus        73 -------~~--~~~~~g~~v~~~~~~~g~~~~G~~Aey~~v~~~~vv~lP~~ls~~eAA~l~~a~~tA~~~~  135 (146)
T d1o89a1          73 -------ED--PRFHAGQEVLLTGWGVGENHWGGLAEQARVKGDWLVAMPQGQAAKEISLSEAPNFAEAIIN  135 (146)
T ss_dssp             -------CS--TTCCTTCEEEEECTTBTTTBCCSSBSEEEECGGGCEECCTTSCCEEECGGGHHHHHHHHHT
T ss_pred             -------cc--CCccceeeEEeecccceecCCCcceeeeeeeeeeEEECCCCCCHHHHHHHHHHHHHHHHHH
Confidence                   55  369999999976542    359999999999999999999999999999998888886654

>d2jhfa1 b.35.1.2 (A:1-163,A:340-374) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=99.88  E-value=5.2e-23  Score=171.59  Aligned_cols=138  Identities=20%  Similarity=0.205  Sum_probs=112.7

Q ss_pred             CcceEEecCCCCC-----CCCCCCCCCCCCCCcEEEEeeeeecChhhHHHHcCCCCCCCCCCCcCCCceeEEEEEEccCC
Q psy1959          12 SSDLLLYNGSGDA-----KPTLPLVPGFEFSGTIIEKKMMTRINSSDLLLYNGSGDAKPTLPLVPGFEFSGTVIEVADTK   86 (296)
Q Consensus        12 ~~~~~~~~~~~~~-----~~~p~~~~~~~~~~evlvkv~~~~i~~~D~~~~~g~~~~~~~~p~~~G~e~~G~V~~v~~~~   86 (296)
                      +|||++++++++.     +|.|+|+++     ||||||.++|||++|++.+.|.++.  ++|.++|||++|+|+++    
T Consensus         8 k~KAavl~~~~~~l~i~ev~~P~p~~~-----eVlVkV~a~giC~sDl~~~~G~~~~--~~P~i~GHE~~G~Vv~v----   76 (198)
T d2jhfa1           8 KCKAAVLWEEKKPFSIEEVEVAPPKAH-----EVRIKMVATGICRSDDHVVSGTLVT--PLPVIAGHEAAGIVESI----   76 (198)
T ss_dssp             EEEEEEBCSTTSCCEEEEEEECCCCTT-----EEEEEEEEEECCHHHHHHHHTSSCC--CSSBCCCCSEEEEEEEE----
T ss_pred             EEEEEEEecCCCCCEEEEEECCCCCCC-----EEEEEEEEEecccccceeecCCccc--ccceecccceeEEEEec----
Confidence            5899999888775     688889999     9999999999999999999998764  57999999999999999    


Q ss_pred             CCCCCCCCCCCCCCCCCEEEEecC----------------------------------------------CCCCcccceE
Q psy1959          87 SSSTEEDDEEDVLQVGDKVLALNK----------------------------------------------ELLHGFSDQC  120 (296)
Q Consensus        87 ~~~~~~g~~v~~~~~Gd~V~~~~~----------------------------------------------~~~g~~~~~~  120 (296)
                            |++++++++||||+....                                              ...|+|+||+
T Consensus        77 ------G~~v~~~~vGdrV~v~~~~~c~~c~~c~~g~~~~C~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~G~fAEy~  150 (198)
T d2jhfa1          77 ------GEGVTTVRPGDKVIPLFTPQCGKCRVCKHPEGNFCLKNDLSMPRGTMQDGTSRFTCRGKPIHHFLGTSTFSQYT  150 (198)
T ss_dssp             ------CTTCCSCCTTCEEEECSSCCCSCSHHHHSTTCCCCTTCSSSSCCCSCTTSCCSEEETTEEEBCSTTTCCSBSEE
T ss_pred             ------CccccCcCCCCEEEEeeeecccccccccCCccceeccccccccCccccCccccccccCceeccCCCCCcccCeE
Confidence                  999999999999986321                                              0128999999


Q ss_pred             eeeCCceEECCCCCCHHHHhhhccHHHHHHHHHHHHcCCCCCcEEEEEc
Q psy1959         121 VVHTNDVFKIPEKMTFEHAASLADSYSTAQIVFSRHAKLKEKQTVLVTA  169 (296)
Q Consensus       121 ~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vlI~G  169 (296)
                      ++++.+++++|+.++++.+++...++.....+.   ..+++|++|+|..
T Consensus       151 ~v~~~~~~~~p~~~~~e~l~~~~~~~~~v~~g~---~~l~~G~~VaVi~  196 (198)
T d2jhfa1         151 VVDEISVAKIDAAFALDPLITHVLPFEKINEGF---DLLRSGESIRTIL  196 (198)
T ss_dssp             EEEGGGEEECCTTSCCGGGEEEEEEGGGHHHHH---HHHHTTCCSEEEE
T ss_pred             EeCHHHeEECCCCCCHHHHHHHHHHHHhhhhCC---ceeeCCCEEEEEE
Confidence            999999999999998876655444444333332   2356899988764

>d1tt7a1 b.35.1.2 (A:2-127,A:295-330) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Hypothetical protein YhfP
species: Bacillus subtilis [TaxId: 1423]

Probab=99.88  E-value=7.5e-25  Score=177.19  Aligned_cols=144  Identities=19%  Similarity=0.206  Sum_probs=121.0

Q ss_pred             cceEEecCCCCC-------CCCCCCCCCCCCCCcEEEEeeeeecChhhHHHHcCCCCCCCCCCCcCCCceeEEEEEEccC
Q psy1959          13 SDLLLYNGSGDA-------KPTLPLVPGFEFSGTIIEKKMMTRINSSDLLLYNGSGDAKPTLPLVPGFEFSGTVIEVADT   85 (296)
Q Consensus        13 ~~~~~~~~~~~~-------~~~p~~~~~~~~~~evlvkv~~~~i~~~D~~~~~g~~~~~~~~p~~~G~e~~G~V~~v~~~   85 (296)
                      ||++++++.++.       ++.|+++++     ||||||+|++||++|++.+.|.++....+|.++|+|++|+|++.   
T Consensus         4 ~ka~~~~~~g~~~~l~~~~v~~p~l~~~-----eVLVkV~a~gin~~D~~~~~g~~~~~~~~~~~~g~e~~G~v~~~---   75 (162)
T d1tt7a1           4 FQALQAEKNADDVSVHVKTISTEDLPKD-----GVLIKVAYSGINYKDGLAGKAGGNIVREYPLILGIDAAGTVVSS---   75 (162)
T ss_dssp             EEEEEECCGGGSCCCEEEEEESSSSCSS-----SEEEEECCEEECHHHHHHTSTTCTTCSSCSEECCSEEEEEEEEC---
T ss_pred             EEEEEEEecCCCeEEEEEEcCCCCCCCC-----EEEEEEEEecccchhhheeeecccccccceeeeeeecccccccc---
Confidence            566666665553       778889999     99999999999999999999988876778899999999999986   


Q ss_pred             CCCCCCCCCCCCCCCCCCEEEEecC----CCCCcccceEeeeCCceEECCCCCCHHHHhhhccHHHHHHHHHHHHcCCCC
Q psy1959          86 KSSSTEEDDEEDVLQVGDKVLALNK----ELLHGFSDQCVVHTNDVFKIPEKMTFEHAASLADSYSTAQIVFSRHAKLKE  161 (296)
Q Consensus        86 ~~~~~~~g~~v~~~~~Gd~V~~~~~----~~~g~~~~~~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~  161 (296)
                               .+.++++||+|+....    ...|+|+||+++|++.++++|+++|+++||+++..++|||.++. ..+...
T Consensus        76 ---------~~~~~~~g~~v~~~~~~~g~~~~G~~aey~~v~~~~l~~iP~~ls~~~Aa~~~~~~~ta~~~~~-~~~~~~  145 (162)
T d1tt7a1          76 ---------NDPRFAEGDEVIATSYELGVSRDGGLSEYASVPGDWLVPLPQNLSLKEAMVDQLLTIVDREVSL-EETPGA  145 (162)
T ss_dssp             ---------SSTTCCTTCEEEEESTTBTTTBCCSSBSSEEECGGGEEECCTTCCHHHHHHSCSTTSEEEEECS-TTHHHH
T ss_pred             ---------cccccccceeeEeeeccceeccccccceEEEecHHHEEECCCCCCHHHHHHHHHHHHHHHHHHH-hcCCCC
Confidence                     4567999999998654    23599999999999999999999999999999999999997752 334455


Q ss_pred             CcEEEEEcCCCcH
Q psy1959         162 KQTVLVTAAGGGL  174 (296)
Q Consensus       162 g~~vlI~Ga~g~v  174 (296)
                      +++|+|.|++|++
T Consensus       146 ~~~Vli~ga~G~v  158 (162)
T d1tt7a1         146 LKDILQNRIQGRV  158 (162)
T ss_dssp             HHHTTTTCCSSEE
T ss_pred             CCEEEEECCcceE
Confidence            6778888887653

>d1uufa1 b.35.1.2 (A:3-144,A:313-349) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=99.87  E-value=3.1e-22  Score=164.00  Aligned_cols=128  Identities=23%  Similarity=0.185  Sum_probs=105.5

Q ss_pred             cceEEecCCCCC-----CCCCCCCCCCCCCCcEEEEeeeeecChhhHHHHcCCCCCCCCCCCcCCCceeEEEEEEccCCC
Q psy1959          13 SDLLLYNGSGDA-----KPTLPLVPGFEFSGTIIEKKMMTRINSSDLLLYNGSGDAKPTLPLVPGFEFSGTVIEVADTKS   87 (296)
Q Consensus        13 ~~~~~~~~~~~~-----~~~p~~~~~~~~~~evlvkv~~~~i~~~D~~~~~g~~~~~~~~p~~~G~e~~G~V~~v~~~~~   87 (296)
                      |||++..+++++     +|.|+|+++     ||||||.++|||++|++.+.|.+.. ..+|+++|||++|+|+++     
T Consensus         1 m~a~~~~~~~~pl~i~ev~~P~pg~g-----eVlVkv~a~gic~sDl~~~~g~~~~-~~~P~i~GhE~~G~V~~v-----   69 (179)
T d1uufa1           1 IKAVGAYSAKQPLEPMDITRREPGPN-----DVKIEIAYCGVCHSDLHQVRSEWAG-TVYPCVPGHEIVGRVVAV-----   69 (179)
T ss_dssp             CEEEEBSSTTSCCEEEECCCCCCCTT-----EEEEEEEEEECCHHHHHHHHCTTSC-CCSSBCCCCCEEEEEEEE-----
T ss_pred             CeEEEEccCCCCCEEEEecCCCCCCC-----EEEEEEEEECCCCCcceeeeeeecc-ccccccccccccccchhh-----
Confidence            788888888887     788999999     9999999999999999999997765 578999999999999999     


Q ss_pred             CCCCCCCCCCCCCCCCEEEEecC----------------------------------CCCCcccceEeeeCCceEECCCC
Q psy1959          88 SSTEEDDEEDVLQVGDKVLALNK----------------------------------ELLHGFSDQCVVHTNDVFKIPEK  133 (296)
Q Consensus        88 ~~~~~g~~v~~~~~Gd~V~~~~~----------------------------------~~~g~~~~~~~v~~~~~~~iP~~  133 (296)
                           |++|+++++||||.....                                  +..|+|+||+++++++++++|+.
T Consensus        70 -----G~~V~~~~vGdrV~v~~~~~~cg~C~~C~~g~~~~C~~~~~~~~~~~~~~~~~~~GgfaEy~~v~~~~~~~ip~~  144 (179)
T d1uufa1          70 -----GDQVEKYAPGDLVGVGCIVDSCKHCEECEDGLENYCDHMTGTYNSPTPDEPGHTLGGYSQQIVVHERYVLRIRVA  144 (179)
T ss_dssp             -----CTTCCSCCTTCEEEECSEEECCSSSHHHHTTCGGGCTTCEETTTSBCSSTTSBCCCSSBSEEEEEGGGCEECCCC
T ss_pred             -----ccccccCCCCCEEEEcccccccCccccccCcccccCCCccccccccCCCCCcccccccceEEEechHHEEECCCC
Confidence                 999999999999964210                                  12489999999999999999966


Q ss_pred             CCHHHHhhhccHHHHHHHHHHHHcCCC
Q psy1959         134 MTFEHAASLADSYSTAQIVFSRHAKLK  160 (296)
Q Consensus       134 ~~~~~aa~l~~~~~ta~~~l~~~~~~~  160 (296)
                      ....   .+..++.++++++ ..+.++
T Consensus       145 ~~~~---~~a~~l~~a~~a~-~~a~v~  167 (179)
T d1uufa1         145 DIEM---IRADQINEAYERM-LRGDVK  167 (179)
T ss_dssp             CEEE---ECGGGHHHHHHHH-HTTCSS
T ss_pred             CcCh---hHhchhHHHHHHH-HHhCcc
Confidence            5332   2335677888887 445553

>d1gu7a1 b.35.1.2 (A:23-160,A:350-386) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: 2,4-dienoyl-CoA reductase
species: Yeast (Candida tropicalis) [TaxId: 5482]

Probab=99.87  E-value=3.6e-25  Score=180.99  Aligned_cols=153  Identities=18%  Similarity=0.175  Sum_probs=125.3

Q ss_pred             CCcceEEecCCCCC----------CCCCCCCCCCCCCCcEEEEeeeeecChhhHHHHcCCCCCC---------CCCCCcC
Q psy1959          11 NSSDLLLYNGSGDA----------KPTLPLVPGFEFSGTIIEKKMMTRINSSDLLLYNGSGDAK---------PTLPLVP   71 (296)
Q Consensus        11 ~~~~~~~~~~~~~~----------~~~p~~~~~~~~~~evlvkv~~~~i~~~D~~~~~g~~~~~---------~~~p~~~   71 (296)
                      -++|++++.+.+++          .|.|.|+++     ||||||.+++||++|++.++|.++..         ...|.++
T Consensus         2 ~t~kA~v~~~~G~p~~~l~l~~~~~p~p~~~~~-----eVlVkv~a~~i~~~D~~~~~G~~~~~~~~~~~~~~~~~~~v~   76 (175)
T d1gu7a1           2 ITAQAVLYTQHGEPKDVLFTQSFEIDDDNLAPN-----EVIVKTLGSPVNPSDINQIQGVYPSKPAKTTGFGTTEPAAPC   76 (175)
T ss_dssp             EEEEEEEESSCSCHHHHCEEEEEEECTTSCCTT-----EEEEEEEEEEECHHHHHHHHTCSSCCCCCBSTTCCSSCBEEC
T ss_pred             ceeEEEEEccCCCcccccEEEEEECCCCCCCcC-----EEEEEEEEeccCcceeEEEecCcccccccccccCCCCCCccc
Confidence            46788888876653          567778889     99999999999999999998876442         2457789


Q ss_pred             CCceeEEEEEEccCCCCCCCCCCCCCCCCCCCEEEEecCCCCCcccceEeeeCCceEECCCCCCHHHHhhhccHHHHHHH
Q psy1959          72 GFEFSGTVIEVADTKSSSTEEDDEEDVLQVGDKVLALNKELLHGFSDQCVVHTNDVFKIPEKMTFEHAASLADSYSTAQI  151 (296)
Q Consensus        72 G~e~~G~V~~v~~~~~~~~~~g~~v~~~~~Gd~V~~~~~~~~g~~~~~~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~  151 (296)
                      |+|++|+|+++          |.++..++.||+|..... ..|+|+||+++++++++++|++++.+.  ++.....|||+
T Consensus        77 G~e~~g~V~~~----------~~~~~~~~~g~~v~~~~~-~~g~~aey~~v~~~~~~~iP~~~~~~~--a~~~~~~ta~~  143 (175)
T d1gu7a1          77 GNEGLFEVIKV----------GSNVSSLEAGDWVIPSHV-NFGTWRTHALGNDDDFIKLPNPAQSKA--NGKPNGLTDAK  143 (175)
T ss_dssp             CSCCEEEEEEE----------CTTCCSCCTTCEEEESSS-CCCCSBSEEEEEGGGEEEECCHHHHHH--TTCSCCCCCCC
T ss_pred             ccccccccccc----------cccccccccccceecccc-ccccccceeeehhhhccCCCccchhhh--hccchHHHHHH
Confidence            99999999999          999999999999987644 358999999999999999999875443  34567778888


Q ss_pred             HHHH-HcCCCCCcEEEEEc-CCCcHHHHHHHH
Q psy1959         152 VFSR-HAKLKEKQTVLVTA-AGGGLGLAAVDM  181 (296)
Q Consensus       152 ~l~~-~~~~~~g~~vlI~G-a~g~vG~aa~~l  181 (296)
                      ++.. ..++++|++|+|+| ++|++|++++|+
T Consensus       144 ~l~~~~~~~~~g~~vli~gaa~~gvG~~~iQ~  175 (175)
T d1gu7a1         144 SIETLYDGTKPLHELYQDGVANSKDGKQLITY  175 (175)
T ss_dssp             CEEEECCSSSCHHHHHHHHHHTGGGSCEEEEC
T ss_pred             HHHHHhcCCCCCCEEEEECccchhhhheEEeC
Confidence            8643 46799999999998 568899887763

>d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

Probab=99.87  E-value=1.3e-22  Score=165.38  Aligned_cols=137  Identities=25%  Similarity=0.264  Sum_probs=117.9

Q ss_pred             CCHHHHhhhccHHHHHHHHHHHHcCCCCCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCcEEEE
Q psy1959         134 MTFEHAASLADSYSTAQIVFSRHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALT  213 (296)
Q Consensus       134 ~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~~~~~  213 (296)
                      +|+++||+++++++|||+++. .+++++|++|+|+|++|++|++++|+| +..|++|++++++++|.+.++++|++.+++
T Consensus         1 ls~eeAA~l~~~~~TA~~al~-~~~~~~g~~VlI~ga~G~vG~~aiqla-k~~G~~vi~~~~~~~~~~~~~~lGa~~~i~   78 (171)
T d1iz0a2           1 LSPEEAAAFPVSFLTAYLALK-RAQARPGEKVLVQAAAGALGTAAVQVA-RAMGLRVLAAASRPEKLALPLALGAEEAAT   78 (171)
T ss_dssp             CCHHHHHTSHHHHHHHHHHHH-HTTCCTTCEEEESSTTBHHHHHHHHHH-HHTTCEEEEEESSGGGSHHHHHTTCSEEEE
T ss_pred             CCHHHHHHHHHHHHHHHHHHH-HhCCCCCCEEEEEeccccchhhhhhhh-cccccccccccccccccccccccccceeee
Confidence            589999999999999999995 589999999999999999999999999 679999999999999999999999999998


Q ss_pred             cCCchhHHHHHHHHhCCCcccEEEECCCCccHHHHHHHhhccCceEE-----------eecccceeeeeEEecccccc
Q psy1959         214 FTNEKSLVNKVLEVSGGKYANVVFEAVGGEDKTDLIRQKGAWAALTF-----------TNEKSLVNKVLEVSGGKYAN  280 (296)
Q Consensus       214 ~~~~~~~~~~i~~~~~~~g~d~vld~~g~~~~~~~~~~lg~~~g~~~-----------~~~~~~~~k~~~i~g~~~~~  280 (296)
                      +.+      ...+.+.++|+|++||++| +.++.+++++ +++|++.           ++...++.|++++.|++...
T Consensus        79 ~~~------~~~~~~~~~g~D~v~d~~G-~~~~~~~~~l-~~~G~~v~~G~~~g~~~~~~~~~~~~k~~~i~g~~~~~  148 (171)
T d1iz0a2          79 YAE------VPERAKAWGGLDLVLEVRG-KEVEESLGLL-AHGGRLVYIGAAEGEVAPIPPLRLMRRNLAVLGFWLTP  148 (171)
T ss_dssp             GGG------HHHHHHHTTSEEEEEECSC-TTHHHHHTTE-EEEEEEEEC-------CCCCTTHHHHTTCEEEECCHHH
T ss_pred             hhh------hhhhhhccccccccccccc-hhHHHHHHHH-hcCCcEEEEeCCCCCCCCccHHHHHHCCcEEEEEeCcC
Confidence            854      2234455679999999988 6789999999 7777662           33457789999999987544

>d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative enoyl reductase domain of polyketide synthase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.87  E-value=3.4e-22  Score=164.20  Aligned_cols=122  Identities=24%  Similarity=0.341  Sum_probs=114.4

Q ss_pred             HHHhhhccHHHHHHHHHHHHcCCCCCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCcEEEEcCC
Q psy1959         137 EHAASLADSYSTAQIVFSRHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTN  216 (296)
Q Consensus       137 ~~aa~l~~~~~ta~~~l~~~~~~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~~~~~~~~  216 (296)
                      ++||+++++++|||+++.+.+++++|++|||+|++|++|++++|+| +..|++|+++++++++.++++++|++.++++++
T Consensus         1 eeAA~l~~~~~TA~~al~~~~~~~~g~~VlI~ga~g~vG~~~iqla-~~~g~~vi~~~~~~~~~~~l~~~Ga~~vi~~~~   79 (183)
T d1pqwa_           1 NEAATFGVAYLTAWHSLCEVGRLSPGERVLIHSATGGVGMAAVSIA-KMIGARIYTTAGSDAKREMLSRLGVEYVGDSRS   79 (183)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTSCCCTTCEEEETTTTSHHHHHHHHHH-HHHTCEEEEEESSHHHHHHHHTTCCSEEEETTC
T ss_pred             CchhhhhHHHHHHHHHHHHHhCCCCCCEEEEECCCCCcccccchhh-ccccccceeeecccccccccccccccccccCCc
Confidence            4789999999999999989999999999999999999999999999 678999999999999999999999999999988


Q ss_pred             chhHHHHHHHHhCCCcccEEEECCCCccHHHHHHHhhccCceEEe
Q psy1959         217 EKSLVNKVLEVSGGKYANVVFEAVGGEDKTDLIRQKGAWAALTFT  261 (296)
Q Consensus       217 ~~~~~~~i~~~~~~~g~d~vld~~g~~~~~~~~~~lg~~~g~~~~  261 (296)
                       .++.+.+++.++++|+|++||++|++.++.+++++ +++|++..
T Consensus        80 -~~~~~~v~~~t~~~g~d~v~d~~g~~~~~~~~~~l-~~~G~~v~  122 (183)
T d1pqwa_          80 -VDFADEILELTDGYGVDVVLNSLAGEAIQRGVQIL-APGGRFIE  122 (183)
T ss_dssp             -STHHHHHHHHTTTCCEEEEEECCCTHHHHHHHHTE-EEEEEEEE
T ss_pred             -cCHHHHHHHHhCCCCEEEEEecccchHHHHHHHHh-cCCCEEEE
Confidence             89999999999999999999999999999999999 88887754

>d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: B. subtilis YhfP homologue
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.87  E-value=1.4e-22  Score=165.55  Aligned_cols=139  Identities=20%  Similarity=0.256  Sum_probs=116.8

Q ss_pred             CCHHHHhhhccHHHHHHHHHH---HHcCCCCCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCcE
Q psy1959         134 MTFEHAASLADSYSTAQIVFS---RHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWA  210 (296)
Q Consensus       134 ~~~~~aa~l~~~~~ta~~~l~---~~~~~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~~  210 (296)
                      ||+++||+++.+++|||++++   +..+.++|++|||+|++|++|.+++|+| +..|++|++++++++|.++++++|++.
T Consensus         1 lS~~eAAal~~aglTA~~a~~~L~~~g~~~~g~~VLI~gaaGGVG~~aiQla-k~~Ga~Viat~~s~~k~~~~~~lGa~~   79 (176)
T d1xa0a2           1 LTLKEAMAIGTAGFTAALSIHRLEEHGLTPERGPVLVTGATGGVGSLAVSML-AKRGYTVEASTGKAAEHDYLRVLGAKE   79 (176)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHTTCCGGGCCEEESSTTSHHHHHHHHHH-HHTTCCEEEEESCTTCHHHHHHTTCSE
T ss_pred             CCHHHHHHhhhHHHHHHHHHHHHHHhCCCCCCCEEEEEeccchHHHHHHHHH-HHcCCceEEecCchHHHHHHHhcccce
Confidence            689999999999999997754   4578889999999999999999999999 678999999999999999999999999


Q ss_pred             EEEcCCchhHHHHHHHHhCCCcccEEEECCCCccHHHHHHHhhccCceEE-----------eecccceeeeeEEeccc
Q psy1959         211 ALTFTNEKSLVNKVLEVSGGKYANVVFEAVGGEDKTDLIRQKGAWAALTF-----------TNEKSLVNKVLEVSGGK  277 (296)
Q Consensus       211 ~~~~~~~~~~~~~i~~~~~~~g~d~vld~~g~~~~~~~~~~lg~~~g~~~-----------~~~~~~~~k~~~i~g~~  277 (296)
                      ++++++  .+. +....++++++|+|||++|++.+..++++| +++|++.           ++...++.|+++|.|..
T Consensus        80 vi~~~~--~~~-~~~~~~~~~gvD~vid~vgg~~~~~~l~~l-~~~Griv~~G~~~g~~~~~~~~~~~~k~~~i~Gv~  153 (176)
T d1xa0a2          80 VLARED--VMA-ERIRPLDKQRWAAAVDPVGGRTLATVLSRM-RYGGAVAVSGLTGGAEVPTTVHPFILRGVSLLGID  153 (176)
T ss_dssp             EEECC------------CCSCCEEEEEECSTTTTHHHHHHTE-EEEEEEEECSCCSSSCCCCCSHHHHHTTCEEEECC
T ss_pred             eeecch--hHH-HHHHHhhccCcCEEEEcCCchhHHHHHHHh-CCCceEEEeecccCcccCCCHHHHHHCCcEEEEEe
Confidence            999864  333 334456678999999999999999999999 8888773           44557788999999953

>d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

Probab=99.87  E-value=1.6e-22  Score=166.34  Aligned_cols=139  Identities=24%  Similarity=0.265  Sum_probs=123.6

Q ss_pred             hhhccHHHHHHHHHHHHcCCCCCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCcEEEEcCCchh
Q psy1959         140 ASLADSYSTAQIVFSRHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKS  219 (296)
Q Consensus       140 a~l~~~~~ta~~~l~~~~~~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~  219 (296)
                      ++|.++++|||++|.+.+++++|++|+|+|++|++|++++|+| +..|++||++++++++.++++++|++.++++++ .+
T Consensus         8 ~~lg~~glTA~~al~~~~~v~~G~~VlV~ga~ggvG~~aiqla-k~~Ga~vi~~~~~~~~~~~~~~~Ga~~vi~~~~-~~   85 (182)
T d1v3va2           8 GTIGMPGLTAYFGLLEVCGVKGGETVLVSAAAGAVGSVVGQIA-KLKGCKVVGAAGSDEKIAYLKQIGFDAAFNYKT-VN   85 (182)
T ss_dssp             TTTSHHHHHHHHHHHTTTCCCSSCEEEESSTTSHHHHHHHHHH-HHTTCEEEEEESSHHHHHHHHHTTCSEEEETTS-CS
T ss_pred             HHHhhHHHHHHHHHHHHhCCCCCCEEEEEeCCCchhHHHHHHH-HccCCEEEEeCCCHHHHHHHHhhhhhhhccccc-cc
Confidence            4688899999999999999999999999999999999999999 678999999999999999999999999999987 77


Q ss_pred             HHHHHHHHhCCCcccEEEECCCCccHHHHHHHhhccCceEEee-----------------cccceeeeeEEecccccce
Q psy1959         220 LVNKVLEVSGGKYANVVFEAVGGEDKTDLIRQKGAWAALTFTN-----------------EKSLVNKVLEVSGGKYANV  281 (296)
Q Consensus       220 ~~~~i~~~~~~~g~d~vld~~g~~~~~~~~~~lg~~~g~~~~~-----------------~~~~~~k~~~i~g~~~~~~  281 (296)
                      +.+.+.+.+++.|+|++||++|++.++.+++++ +++|++..-                 ...++.|++++.|++..++
T Consensus        86 ~~~~~~~~~~~~Gvd~v~D~vG~~~~~~~~~~l-~~~G~~v~~G~~~~~~~~~~~~~~~~~~~l~~k~~ti~g~~~~~~  163 (182)
T d1v3va2          86 SLEEALKKASPDGYDCYFDNVGGEFLNTVLSQM-KDFGKIAICGAISVYNRMDQLPPGPSPESIIYKQLRIEGFIVYRW  163 (182)
T ss_dssp             CHHHHHHHHCTTCEEEEEESSCHHHHHHHGGGE-EEEEEEEECCCGGGTTCTTSCCBCCCHHHHHHTTCEEEECCGGGC
T ss_pred             HHHHHHHHhhcCCCceeEEecCchhhhhhhhhc-cCCCeEEeecceeeccccccCCCCcchHHHhhcCcEEEEEEEecc
Confidence            778888888888999999999999999999999 887777432                 2357889999999875543

>d1jqba1 b.35.1.2 (A:1001-1139,A:1314-1351) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=99.87  E-value=1.5e-22  Score=165.55  Aligned_cols=114  Identities=16%  Similarity=0.121  Sum_probs=96.3

Q ss_pred             cceEEecCCCCC----CCCCCCCCCCCCCCcEEEEeeeeecChhhHHHHcCCCCCCCCCCCcCCCceeEEEEEEccCCCC
Q psy1959          13 SDLLLYNGSGDA----KPTLPLVPGFEFSGTIIEKKMMTRINSSDLLLYNGSGDAKPTLPLVPGFEFSGTVIEVADTKSS   88 (296)
Q Consensus        13 ~~~~~~~~~~~~----~~~p~~~~~~~~~~evlvkv~~~~i~~~D~~~~~g~~~~~~~~p~~~G~e~~G~V~~v~~~~~~   88 (296)
                      ||+++++++++.    .|.|.|+++     |||||+.+++||++|++.+.+.... ..+|+++|||++|+|+++      
T Consensus         1 MKa~v~~~~~~l~i~e~p~P~~~~~-----eVlIkv~a~gic~sD~~~~~~~~~~-~~~P~i~GhE~~G~V~~v------   68 (177)
T d1jqba1           1 MKGFAMLGINKLGWIEKERPVAGSY-----DAIVRPLAVSPCTSDIHTVFEGALG-DRKNMILGHEAVGEVVEV------   68 (177)
T ss_dssp             CEEEEEEETTEEEEEECCCCCCCTT-----CEEEEEEEECCCHHHHHHHHHCTTC-CCSSEECCCCEEEEEEEE------
T ss_pred             CeEEEEEeCCCeEEEEeeCCCCCCC-----EEEEEEEEEecCCCcccccccCCCC-CCCCccCcceeeEEeeec------
Confidence            899999999888    788888999     9999999999999999877543322 467999999999999999      


Q ss_pred             CCCCCCCCCCCCCCCEEEEecC----------------------------CCCCcccceEeeeC--CceEECCCCCCHHH
Q psy1959          89 STEEDDEEDVLQVGDKVLALNK----------------------------ELLHGFSDQCVVHT--NDVFKIPEKMTFEH  138 (296)
Q Consensus        89 ~~~~g~~v~~~~~Gd~V~~~~~----------------------------~~~g~~~~~~~v~~--~~~~~iP~~~~~~~  138 (296)
                          |+++++|++||||+....                            +.+|+|+||+++|.  .+++++|+++++++
T Consensus        69 ----G~~v~~~~vGdrV~v~~~~~cg~c~~C~~g~~~~c~~~~~~~~~g~~~~G~~aEy~~vp~a~~~l~~iP~~~~~~~  144 (177)
T d1jqba1          69 ----GSEVKDFKPGDRVIVPCTTPDWRSLEVQAGFQQHSNGMLAGWKFSNFKDGVFGEYFHVNDADMNLAILPKDVDLSK  144 (177)
T ss_dssp             ----CTTCCSCCTTCEEEECSCCCCSSSHHHHTTCGGGTTSTTTTCCBTTTBCCSSBSSEEESSHHHHCEECCTTSCGGG
T ss_pred             ----ccccceecCCCcEEEeeeeccccccchhhhhhcccccccccccccCCCChhcCeeEEEEhhhCeEEECCCCcchHH
Confidence                999999999999985321                            23599999999986  36899999999887


Q ss_pred             Hhhh
Q psy1959         139 AASL  142 (296)
Q Consensus       139 aa~l  142 (296)
                      ++..
T Consensus       145 ~~~~  148 (177)
T d1jqba1         145 LVTH  148 (177)
T ss_dssp             GEEE
T ss_pred             HHHH
Confidence            7543

>d1p0fa1 b.35.1.2 (A:1001-1163,A:1338-1372) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=99.86  E-value=1.8e-22  Score=168.18  Aligned_cols=139  Identities=18%  Similarity=0.158  Sum_probs=113.0

Q ss_pred             cCCcceEEecCCCCC-----CCCCCCCCCCCCCCcEEEEeeeeecChhhHHHHcCCCCCCCCCCCcCCCceeEEEEEEcc
Q psy1959          10 LNSSDLLLYNGSGDA-----KPTLPLVPGFEFSGTIIEKKMMTRINSSDLLLYNGSGDAKPTLPLVPGFEFSGTVIEVAD   84 (296)
Q Consensus        10 ~~~~~~~~~~~~~~~-----~~~p~~~~~~~~~~evlvkv~~~~i~~~D~~~~~g~~~~~~~~p~~~G~e~~G~V~~v~~   84 (296)
                      +-+|||++++++++.     +|.|+|+++     ||||||.+++||++|+++++|.++  ..+|.++|||++|+|+++  
T Consensus         6 ~~~~KAav~~~~g~~l~i~ev~~P~p~~~-----eVlVkv~a~gICgsDlh~~~G~~~--~~~P~i~GHE~~G~Vv~~--   76 (198)
T d1p0fa1           6 DITCKAAVAWEPHKPLSLETITVAPPKAH-----EVRIKILASGICGSDSSVLKEIIP--SKFPVILGHEAVGVVESI--   76 (198)
T ss_dssp             CEEEEEEEBSSTTSCCEEEEEEECCCCTT-----EEEEEEEEEECCHHHHHHHTTSSC--CCSSBCCCCCEEEEEEEE--
T ss_pred             ceEEEEEEEccCCCCCEEEEEECCCCCCC-----EEEEEEEEEEEecccceeeeeccc--cccccccceeeeeeeeec--
Confidence            448999999999764     788888999     999999999999999999999875  467999999999999999  


Q ss_pred             CCCCCCCCCCCCCCCCCCCEEEEecC----------------------------------------------CCCCcccc
Q psy1959          85 TKSSSTEEDDEEDVLQVGDKVLALNK----------------------------------------------ELLHGFSD  118 (296)
Q Consensus        85 ~~~~~~~~g~~v~~~~~Gd~V~~~~~----------------------------------------------~~~g~~~~  118 (296)
                              |+++.++++||||+....                                              ...|+|+|
T Consensus        77 --------G~~v~~~~~GdrV~~~~~~~Cg~c~~c~~g~~~~C~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~fae  148 (198)
T d1p0fa1          77 --------GAGVTCVKPGDKVIPLFVPQCGSCRACKSSNSNFCEKNDMGAKTGLMADMTSRFTCRGKPIYNLMGTSTFTE  148 (198)
T ss_dssp             --------CTTCCSCCTTCEEEECSSCCCSSSHHHHCTTCCCCTTCSTTTCCCSCTTSCCSEEETTEEEBCSTTTCCSBS
T ss_pred             --------CcccccCcCCCEEEEEeeccccccccccccccccchhhhccccccccCCCceeEeeCCeeccccCCCcccee
Confidence                    999999999999986331                                              01378999


Q ss_pred             eEeeeCCceEECCCCCCHHHHhhhccHHHHHHHHHHHHcCCCCCcEEEEEcCCCcHHH
Q psy1959         119 QCVVHTNDVFKIPEKMTFEHAASLADSYSTAQIVFSRHAKLKEKQTVLVTAAGGGLGL  176 (296)
Q Consensus       119 ~~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vlI~Ga~g~vG~  176 (296)
                      |..+++..++++|++++.+.+++....+.+          +.+++.|+|.|+ |++|+
T Consensus       149 y~~v~~~~~~kip~~~~~~~~~~~~~~~~~----------v~~~~~vlv~G~-G~iGl  195 (198)
T d1p0fa1         149 YTVVADIAVAKIDPKINVNFLVSTKLTLDQ----------INKAFELLSSGQ-GVRSI  195 (198)
T ss_dssp             EEEEETTSEEEECTTSCGGGGEEEEECGGG----------HHHHHHHTTTSS-CSEEE
T ss_pred             eEEecHHHEEECCCCCCHHHHHHhhcchhh----------cCCCCEEEEECC-CcceE
Confidence            999999999999999998776544433322          223445777775 77664

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=99.86  E-value=2.1e-21  Score=158.48  Aligned_cols=122  Identities=24%  Similarity=0.316  Sum_probs=112.7

Q ss_pred             CCHHHHhhhccHHHHHHHHHHHHcCCCCCcEEEEEcCCCcHHHHHHHHHHHhCCC-EEEEEeCCcchHHHHHhcCCcEEE
Q psy1959         134 MTFEHAASLADSYSTAQIVFSRHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKA-KVIGVCNSEDKTDLIRQKGAWAAL  212 (296)
Q Consensus       134 ~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~-~Vi~~~~~~~~~~~~~~~g~~~~~  212 (296)
                      ||+++|+.++++++|||+++ +.+++++|++|+|+|+ |++|++++|+| +.+|+ +|++++.+++|++.++++|++.++
T Consensus         1 ip~e~A~~l~~~~~ta~~a~-~~a~~~~g~~VlI~Ga-G~vGl~~~q~a-k~~Ga~~Vi~~d~~~~r~~~a~~lGa~~~i   77 (174)
T d1jqba2           1 MPLENAVMITDMMTTGFHGA-ELADIEMGSSVVVIGI-GAVGLMGIAGA-KLRGAGRIIGVGSRPICVEAAKFYGATDIL   77 (174)
T ss_dssp             SCHHHHHTTTTHHHHHHHHH-HHTTCCTTCCEEEECC-SHHHHHHHHHH-HTTTCSCEEEECCCHHHHHHHHHHTCSEEE
T ss_pred             CCHHHHHHhhhHHHHHHHHH-HHhCCCCCCEEEEEcC-Ccchhhhhhhh-hcccccccccccchhhhHHHHHhhCccccc
Confidence            58899999999999999998 6799999999999997 99999999999 67898 799999999999999999999999


Q ss_pred             EcCCchhHHHHHHHHhCCCcccEEEECCCC-ccHHHHHHHhhccCceEE
Q psy1959         213 TFTNEKSLVNKVLEVSGGKYANVVFEAVGG-EDKTDLIRQKGAWAALTF  260 (296)
Q Consensus       213 ~~~~~~~~~~~i~~~~~~~g~d~vld~~g~-~~~~~~~~~lg~~~g~~~  260 (296)
                      ++++ .++.+.+++.++++|+|++|||+|+ +.++.+++++ +++|++.
T Consensus        78 ~~~~-~~~~~~v~~~t~g~G~D~vid~~g~~~~~~~a~~~~-~~~G~iv  124 (174)
T d1jqba2          78 NYKN-GHIEDQVMKLTNGKGVDRVIMAGGGSETLSQAVKMV-KPGGIIS  124 (174)
T ss_dssp             CGGG-SCHHHHHHHHTTTSCEEEEEECSSCTTHHHHHHHHE-EEEEEEE
T ss_pred             cccc-hhHHHHHHHHhhccCcceEEEccCCHHHHHHHHHHH-hcCCEEE
Confidence            9987 7888999999999999999999998 6789999999 7777773

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=99.85  E-value=3.3e-21  Score=156.53  Aligned_cols=141  Identities=22%  Similarity=0.241  Sum_probs=125.6

Q ss_pred             CCHHHHhhhccHHHHHHHHHHHHcCCCCCcEEEEEcCCCcHHHHHHHHHHHhCC-CEEEEEeCCcchHHHHHhcCCcEEE
Q psy1959         134 MTFEHAASLADSYSTAQIVFSRHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYK-AKVIGVCNSEDKTDLIRQKGAWAAL  212 (296)
Q Consensus       134 ~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vlI~Ga~g~vG~aa~~la~~~~g-~~Vi~~~~~~~~~~~~~~~g~~~~~  212 (296)
                      +|+.+||+|++++.|||+++ +..++++|++|+|+|++|++|++++++++ ..| .+|++++.+++|+++++++|++.++
T Consensus         1 l~~~eAA~l~c~~~Ta~~al-~~~~~~~g~~vlV~G~~G~vG~~~~~~~~-~~g~~~V~~~~~~~~~~~~~~~~Ga~~~i   78 (170)
T d1jvba2           1 LNAVEAAPLTCSGITTYRAV-RKASLDPTKTLLVVGAGGGLGTMAVQIAK-AVSGATIIGVDVREEAVEAAKRAGADYVI   78 (170)
T ss_dssp             SCHHHHGGGGTHHHHHHHHH-HHTTCCTTCEEEEETTTSHHHHHHHHHHH-HHTCCEEEEEESSHHHHHHHHHHTCSEEE
T ss_pred             CCHHHHHHHHHHHHHHHHHH-HHhCCCCCCEEEEEeccccceeeeeeccc-ccccccccccccchhhHHHHHHcCCceee
Confidence            57899999999999999999 67899999999999988999999999994 566 4999999999999999999999999


Q ss_pred             EcCCchhHHHHHHHHhCCCcccEEEECCCC-ccHHHHHHHhhccCceE----------EeecccceeeeeEEecccc
Q psy1959         213 TFTNEKSLVNKVLEVSGGKYANVVFEAVGG-EDKTDLIRQKGAWAALT----------FTNEKSLVNKVLEVSGGKY  278 (296)
Q Consensus       213 ~~~~~~~~~~~i~~~~~~~g~d~vld~~g~-~~~~~~~~~lg~~~g~~----------~~~~~~~~~k~~~i~g~~~  278 (296)
                      ++++ .++.+.+++.+.++++|+++||+|+ +.++.+++++ +++|++          .++...++.|++++.|++.
T Consensus        79 ~~~~-~~~~~~~~~~~~~~~~d~vid~~g~~~~~~~a~~~l-~~~G~iv~~G~~~~~~~~~~~~~~~k~i~i~Gs~~  153 (170)
T d1jvba2          79 NASM-QDPLAEIRRITESKGVDAVIDLNNSEKTLSVYPKAL-AKQGKYVMVGLFGADLHYHAPLITLSEIQFVGSLV  153 (170)
T ss_dssp             ETTT-SCHHHHHHHHTTTSCEEEEEESCCCHHHHTTGGGGE-EEEEEEEECCSSCCCCCCCHHHHHHHTCEEEECCS
T ss_pred             ccCC-cCHHHHHHHHhhcccchhhhcccccchHHHhhhhhc-ccCCEEEEeccccCccccCHHHHHhCCcEEEEEec
Confidence            9887 7888899999988899999999999 5789999999 777766          3444578889999999874

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.84  E-value=8.2e-21  Score=153.54  Aligned_cols=138  Identities=20%  Similarity=0.172  Sum_probs=119.4

Q ss_pred             CCHHHHhhhccHHHHHHHHHHHHcCCCCCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCcEEEE
Q psy1959         134 MTFEHAASLADSYSTAQIVFSRHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALT  213 (296)
Q Consensus       134 ~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~~~~~  213 (296)
                      +|++++|+|++++.|||+++ +.+++++|++|+|+|+ |++|++++|+| +..|++|++++++++|+++++++|++.+++
T Consensus         1 v~f~~aA~l~ca~~Ta~~al-~~~~~~~g~~VlV~Ga-G~vG~~~~~~a-k~~G~~Vi~~~~~~~~~~~a~~~Ga~~~i~   77 (166)
T d1llua2           1 VEFAEIAPILCAGVTVYKGL-KQTNARPGQWVAISGI-GGLGHVAVQYA-RAMGLHVAAIDIDDAKLELARKLGASLTVN   77 (166)
T ss_dssp             SCHHHHGGGGTHHHHHHHHH-HHHTCCTTCEEEEECC-SHHHHHHHHHH-HHTTCEEEEEESCHHHHHHHHHTTCSEEEE
T ss_pred             CCHHHHHHHHHHHHHHHHHH-HHhCCCCCCEEEEeec-cccHHHHHHHH-HHcCCccceecchhhHHHhhhccCcccccc
Confidence            57999999999999999999 5689999999999997 99999999999 678999999999999999999999999999


Q ss_pred             cCCchhHHHHHHHHhCCCcccEEEECCCC-ccHHHHHHHhhccCceE----------EeecccceeeeeEEecccc
Q psy1959         214 FTNEKSLVNKVLEVSGGKYANVVFEAVGG-EDKTDLIRQKGAWAALT----------FTNEKSLVNKVLEVSGGKY  278 (296)
Q Consensus       214 ~~~~~~~~~~i~~~~~~~g~d~vld~~g~-~~~~~~~~~lg~~~g~~----------~~~~~~~~~k~~~i~g~~~  278 (296)
                      +++ .+..+.+.+.+.  +.+.++++.++ +.++.+++++ +++|++          .++...++.|+++|.|++.
T Consensus        78 ~~~-~~~~~~~~~~~~--g~~~~i~~~~~~~~~~~~~~~l-~~~G~iv~~G~~~~~~~~~~~~~~~k~~~i~Gs~~  149 (166)
T d1llua2          78 ARQ-EDPVEAIQRDIG--GAHGVLVTAVSNSAFGQAIGMA-RRGGTIALVGLPPGDFPTPIFDVVLKGLHIAGSIV  149 (166)
T ss_dssp             TTT-SCHHHHHHHHHS--SEEEEEECCSCHHHHHHHHTTE-EEEEEEEECCCCSSEEEEEHHHHHHTTCEEEECCS
T ss_pred             ccc-hhHHHHHHHhhc--CCcccccccccchHHHHHHHHh-cCCcEEEEEEecCCCccCCHHHHHhCCcEEEEEee
Confidence            987 677777777663  56666666666 7999999999 776665          4566678889999999873

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=99.84  E-value=5.2e-21  Score=156.06  Aligned_cols=140  Identities=20%  Similarity=0.176  Sum_probs=122.6

Q ss_pred             CHHHHhhhccHHHHHHHHHHHHcCCCCCcEEEEEcCCCcHHHHHHHHHHHhCCC-EEEEEeCCcchHHHHHhcCCcEEEE
Q psy1959         135 TFEHAASLADSYSTAQIVFSRHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKA-KVIGVCNSEDKTDLIRQKGAWAALT  213 (296)
Q Consensus       135 ~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~-~Vi~~~~~~~~~~~~~~~g~~~~~~  213 (296)
                      +++.++.|++++.|||+++.+.+++++|++|+|+|+ |++|++++|+| +..|+ +|++++.+++|+++++++|++.+++
T Consensus         2 P~e~aapl~ca~~Ta~~a~~~~~~~~~g~~VlI~G~-G~iG~~~~~~a-k~~g~~~v~~~~~~~~k~~~a~~~Ga~~~i~   79 (174)
T d1f8fa2           2 PIELLGPLGCGIQTGAGACINALKVTPASSFVTWGA-GAVGLSALLAA-KVCGASIIIAVDIVESRLELAKQLGATHVIN   79 (174)
T ss_dssp             CGGGTGGGGTHHHHHHHHHHTTTCCCTTCEEEEESC-SHHHHHHHHHH-HHHTCSEEEEEESCHHHHHHHHHHTCSEEEE
T ss_pred             CHHHHHHHhhHHHHHHHHHHHhhCCCCCCEEEEeCC-CHHHhhhhhcc-cccccceeeeeccHHHHHHHHHHcCCeEEEe
Confidence            567789999999999999888999999999999997 99999999999 56777 6777888999999999999999999


Q ss_pred             cCCchhHHHHHHHHhCCCcccEEEECCCC-ccHHHHHHHhhccCceEE------------eecccceeeeeEEeccccc
Q psy1959         214 FTNEKSLVNKVLEVSGGKYANVVFEAVGG-EDKTDLIRQKGAWAALTF------------TNEKSLVNKVLEVSGGKYA  279 (296)
Q Consensus       214 ~~~~~~~~~~i~~~~~~~g~d~vld~~g~-~~~~~~~~~lg~~~g~~~------------~~~~~~~~k~~~i~g~~~~  279 (296)
                      +++ +++.+.+++.+++ ++|++|||+|+ +.++.+++++ +++|++.            ++...++.|++++.|+++.
T Consensus        80 ~~~-~~~~~~i~~~t~g-g~D~vid~~G~~~~~~~~~~~~-~~~G~i~~~G~~~~~~~~~~~~~~~~~k~~~i~Gs~~g  155 (174)
T d1f8fa2          80 SKT-QDPVAAIKEITDG-GVNFALESTGSPEILKQGVDAL-GILGKIAVVGAPQLGTTAQFDVNDLLLGGKTILGVVEG  155 (174)
T ss_dssp             TTT-SCHHHHHHHHTTS-CEEEEEECSCCHHHHHHHHHTE-EEEEEEEECCCCSTTCCCCCCHHHHHHTTCEEEECSGG
T ss_pred             CCC-cCHHHHHHHHcCC-CCcEEEEcCCcHHHHHHHHhcc-cCceEEEEEeecCCCcccccCHHHHHHCCCEEEEEEec
Confidence            987 8899999999876 99999999999 6889999999 7777662            3334678899999998744

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=99.84  E-value=1.4e-20  Score=154.58  Aligned_cols=141  Identities=22%  Similarity=0.196  Sum_probs=120.1

Q ss_pred             CHHHHhhhccHHHHHHHHHHHHcCCCCCcEEEEEcCCCcHHHHHHHHHHHhCCC-EEEEEeCCcchHHHHHhcCCcEEEE
Q psy1959         135 TFEHAASLADSYSTAQIVFSRHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKA-KVIGVCNSEDKTDLIRQKGAWAALT  213 (296)
Q Consensus       135 ~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~-~Vi~~~~~~~~~~~~~~~g~~~~~~  213 (296)
                      +++.+|.+.+++.|||+++.+..++++|++|+|+|+ |++|++++|+| +.+|+ +|++++++++|++.++++|++.+++
T Consensus         2 d~~~~a~~~c~~~ta~~al~~~~~~~~G~~VlV~Ga-G~iG~~~~~~a-k~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~   79 (182)
T d1vj0a2           2 DLDVLAMAMCSGATAYHAFDEYPESFAGKTVVIQGA-GPLGLFGVVIA-RSLGAENVIVIAGSPNRLKLAEEIGADLTLN   79 (182)
T ss_dssp             CHHHHHHHTTHHHHHHHHHHTCSSCCBTCEEEEECC-SHHHHHHHHHH-HHTTBSEEEEEESCHHHHHHHHHTTCSEEEE
T ss_pred             cHHHHHHhhcHHHHHHHHHHHHhCCCCCCEEEEECC-Cccchhheecc-cccccccccccccccccccccccccceEEEe
Confidence            356778889999999999988889999999999997 99999999999 67898 8999999999999999999999999


Q ss_pred             cCCc--hhHHHHHHHHhCCCcccEEEECCCC-ccHHHHHHHhhccCceEEee-------------cccceeeeeEEeccc
Q psy1959         214 FTNE--KSLVNKVLEVSGGKYANVVFEAVGG-EDKTDLIRQKGAWAALTFTN-------------EKSLVNKVLEVSGGK  277 (296)
Q Consensus       214 ~~~~--~~~~~~i~~~~~~~g~d~vld~~g~-~~~~~~~~~lg~~~g~~~~~-------------~~~~~~k~~~i~g~~  277 (296)
                      +.+.  .++.+.+.+.+++.|+|++|||+|+ ..++.+++++ +++|++.+-             ...++.|++++.|++
T Consensus        80 ~~~~~~~~~~~~i~~~~~~~g~Dvvid~vG~~~~~~~a~~~l-~~~G~iv~~G~~~~~~~~~~~~~~~l~~k~l~i~G~~  158 (182)
T d1vj0a2          80 RRETSVEERRKAIMDITHGRGADFILEATGDSRALLEGSELL-RRGGFYSVAGVAVPQDPVPFKVYEWLVLKNATFKGIW  158 (182)
T ss_dssp             TTTSCHHHHHHHHHHHTTTSCEEEEEECSSCTTHHHHHHHHE-EEEEEEEECCCCSCCCCEEECHHHHTTTTTCEEEECC
T ss_pred             ccccchHHHHHHHHHhhCCCCceEEeecCCchhHHHHHHHHh-cCCCEEEEEeecCCCCccccccHHHHHHCCcEEEEEE
Confidence            8762  2455667888888899999999998 5789999999 887776321             123678999999987


Q ss_pred             c
Q psy1959         278 Y  278 (296)
Q Consensus       278 ~  278 (296)
                      .
T Consensus       159 ~  159 (182)
T d1vj0a2         159 V  159 (182)
T ss_dssp             C
T ss_pred             e
Confidence            3

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=2.4e-20  Score=151.52  Aligned_cols=138  Identities=20%  Similarity=0.171  Sum_probs=116.4

Q ss_pred             CCHHHHhhhccHHHHHHHHHHHHcCCCCCcEEEEEcCCCcHHHHHHHHHHHhCCC-EEEEEeCCcchHHHHHhcCCcEEE
Q psy1959         134 MTFEHAASLADSYSTAQIVFSRHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKA-KVIGVCNSEDKTDLIRQKGAWAAL  212 (296)
Q Consensus       134 ~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~-~Vi~~~~~~~~~~~~~~~g~~~~~  212 (296)
                      +|+++|| |.+++++||+++ +++++++|++|+|+|+ |++|++++|+| +..|+ +|++++++++|+++++++|++.++
T Consensus         1 vS~e~Aa-l~epla~a~~a~-~~~~~~~gd~VlI~G~-G~iG~~~~~~a-~~~G~~~Vi~~d~~~~rl~~a~~~Ga~~~~   76 (171)
T d1pl8a2           1 VTFEEGA-LIEPLSVGIHAC-RRGGVTLGHKVLVCGA-GPIGMVTLLVA-KAMGAAQVVVTDLSATRLSKAKEIGADLVL   76 (171)
T ss_dssp             SCHHHHH-HHHHHHHHHHHH-HHHTCCTTCEEEEECC-SHHHHHHHHHH-HHTTCSEEEEEESCHHHHHHHHHTTCSEEE
T ss_pred             CCHHHHH-HHHHHHHHHHHH-HHhCCCCCCEEEEECC-CccHHHHHHHH-HHcCCceEEeccCCHHHHHHHHHhCCcccc
Confidence            4788887 668999999999 6789999999999997 99999999999 67898 899999999999999999999998


Q ss_pred             EcCCchhHHHHHHH--HhCCCcccEEEECCCC-ccHHHHHHHhhccCceE----------EeecccceeeeeEEeccc
Q psy1959         213 TFTNEKSLVNKVLE--VSGGKYANVVFEAVGG-EDKTDLIRQKGAWAALT----------FTNEKSLVNKVLEVSGGK  277 (296)
Q Consensus       213 ~~~~~~~~~~~i~~--~~~~~g~d~vld~~g~-~~~~~~~~~lg~~~g~~----------~~~~~~~~~k~~~i~g~~  277 (296)
                      ++.+ .+..+..+.  ...+.++|++|||+|+ ..++.+++++ +++|++          .++...++.|+++|.|++
T Consensus        77 ~~~~-~~~~~~~~~~~~~~g~g~Dvvid~~G~~~~~~~a~~~~-~~gG~iv~~G~~~~~~~~~~~~~~~k~l~i~Gs~  152 (171)
T d1pl8a2          77 QISK-ESPQEIARKVEGQLGCKPEVTIECTGAEASIQAGIYAT-RSGGTLVLVGLGSEMTTVPLLHAAIREVDIKGVF  152 (171)
T ss_dssp             ECSS-CCHHHHHHHHHHHHTSCCSEEEECSCCHHHHHHHHHHS-CTTCEEEECSCCCSCCCCCHHHHHHTTCEEEECC
T ss_pred             cccc-cccccccccccccCCCCceEEEeccCCchhHHHHHHHh-cCCCEEEEEecCCCCCccCHHHHHHCCcEEEEEe
Confidence            8876 444333332  2345689999999999 5889999999 788766          345567889999999986

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=99.83  E-value=3.6e-20  Score=150.92  Aligned_cols=142  Identities=19%  Similarity=0.157  Sum_probs=112.9

Q ss_pred             CHHHHhhhccHHHHHHHHHHHHcCCCCCcEEEEEcCCCcHHHHHHHHHHHhCCC-EEEEEeCCcchHHHHHhcCCcEEEE
Q psy1959         135 TFEHAASLADSYSTAQIVFSRHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKA-KVIGVCNSEDKTDLIRQKGAWAALT  213 (296)
Q Consensus       135 ~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~-~Vi~~~~~~~~~~~~~~~g~~~~~~  213 (296)
                      ++++||.|++++.|+|+++.+.+++++|++|+|+|+ |++|++++|+| +.+|+ +|++++++++|+++++++|++.+++
T Consensus         2 P~e~aa~l~ca~~Tay~al~~~~~~~~G~tVlI~Ga-GGvG~~aiq~a-k~~G~~~vi~~~~~~~k~~~ak~lGa~~~i~   79 (176)
T d2fzwa2           2 PLDKVCLLGCGISTGYGAAVNTAKLEPGSVCAVFGL-GGVGLAVIMGC-KVAGASRIIGVDINKDKFARAKEFGATECIN   79 (176)
T ss_dssp             CHHHHGGGGTHHHHHHHHHHTTTCCCTTCEEEEECC-SHHHHHHHHHH-HHHTCSEEEEECSCGGGHHHHHHHTCSEEEC
T ss_pred             CHHHHhHhhcHHHHHHHHHHHhhCCCCCCEEEEecc-hhHHHHHHHHH-HHHhcCceEEEcccHHHHHHHHHhCCcEEEe
Confidence            688999999999999999988899999999999998 89999999999 55675 8999999999999999999999998


Q ss_pred             cCCchhHHHHHHHHhCCCcccEEEECCCC-ccHHHHHHHhhccCceE------------EeecccceeeeeEEeccccc
Q psy1959         214 FTNEKSLVNKVLEVSGGKYANVVFEAVGG-EDKTDLIRQKGAWAALT------------FTNEKSLVNKVLEVSGGKYA  279 (296)
Q Consensus       214 ~~~~~~~~~~i~~~~~~~g~d~vld~~g~-~~~~~~~~~lg~~~g~~------------~~~~~~~~~k~~~i~g~~~~  279 (296)
                      +.+..+......+.+.+.++|++||++|+ ..+..++.++ ++++..            .......+.++++|.|+.+.
T Consensus        80 ~~~~~~~~~~~~~~~~~~g~D~vid~~G~~~~~~~~~~~~-~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~i~Gs~~G  157 (176)
T d2fzwa2          80 PQDFSKPIQEVLIEMTDGGVDYSFECIGNVKVMRAALEAC-HKGWGVSVVVGVAASGEEIATRPFQLVTGRTWKGTAFG  157 (176)
T ss_dssp             GGGCSSCHHHHHHHHTTSCBSEEEECSCCHHHHHHHHHTB-CTTTCEEEECSCCCTTCCEEECTHHHHTTCEEEECSGG
T ss_pred             CCchhhHHHHHHHHHcCCCCcEeeecCCCHHHHHHHHHhh-cCCceeEEEEeeccccccccccHHHHHCCCEEEEEeee
Confidence            86433334444444456699999999999 5667777777 665443            12223345677888888743

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=99.83  E-value=4.2e-20  Score=150.59  Aligned_cols=141  Identities=16%  Similarity=0.142  Sum_probs=114.9

Q ss_pred             CHHHHhhhccHHHHHHHHHHHHcCCCCCcEEEEEcCCCcHHHHHHHHHHHhCCC-EEEEEeCCcchHHHHHhcCCcEEEE
Q psy1959         135 TFEHAASLADSYSTAQIVFSRHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKA-KVIGVCNSEDKTDLIRQKGAWAALT  213 (296)
Q Consensus       135 ~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~-~Vi~~~~~~~~~~~~~~~g~~~~~~  213 (296)
                      +++++|.|.+++.|+|+++.+.+++++|++|+|+|+ |++|++++|+| +..|+ +|++++.+++|++.++++|++.+++
T Consensus         2 ~Le~aa~l~Ca~~T~~~a~~~~a~v~~G~~VlV~G~-G~iGl~a~~~a-k~~Ga~~Vi~~d~~~~r~~~a~~~Ga~~~i~   79 (174)
T d1e3ia2           2 NLERVCLIGCGFSSGYGAAINTAKVTPGSTCAVFGL-GCVGLSAIIGC-KIAGASRIIAIDINGEKFPKAKALGATDCLN   79 (174)
T ss_dssp             CHHHHGGGGTHHHHHHHHHHTTSCCCTTCEEEEECC-SHHHHHHHHHH-HHTTCSEEEEECSCGGGHHHHHHTTCSEEEC
T ss_pred             CHHHHHHhhhHHHHHHHHHHHhhCCCCCCEEEEECC-ChHHHHHHHHH-HHhCCceeeeeccchHHHHHHHHhCCCcccC
Confidence            578999999999999999888999999999999997 99999999999 67898 7999999999999999999999998


Q ss_pred             cCCchhHHHHHHHHhCCCcccEEEECCCC-ccHHHHHHHhhccC-ceEE----------eecccceeeeeEEeccccc
Q psy1959         214 FTNEKSLVNKVLEVSGGKYANVVFEAVGG-EDKTDLIRQKGAWA-ALTF----------TNEKSLVNKVLEVSGGKYA  279 (296)
Q Consensus       214 ~~~~~~~~~~i~~~~~~~g~d~vld~~g~-~~~~~~~~~lg~~~-g~~~----------~~~~~~~~k~~~i~g~~~~  279 (296)
                      +...++..+.+.+.+.+.|+|++|||+|. +.++.+++++ +++ |++.          ++...++ .+++|.|+++.
T Consensus        80 ~~~~~~~~~~~~~~~~~~G~d~vie~~G~~~~~~~a~~~~-~~g~G~~v~vG~~~~~~~i~~~~~~-~~k~i~Gs~~G  155 (174)
T d1e3ia2          80 PRELDKPVQDVITELTAGGVDYSLDCAGTAQTLKAAVDCT-VLGWGSCTVVGAKVDEMTIPTVDVI-LGRSINGTFFG  155 (174)
T ss_dssp             GGGCSSCHHHHHHHHHTSCBSEEEESSCCHHHHHHHHHTB-CTTTCEEEECCCSSSEEEEEHHHHH-TTCEEEECSGG
T ss_pred             CccchhhhhhhHhhhhcCCCcEEEEecccchHHHHHHHHh-hcCCeEEEecCCCCCccccchHHHh-ccCEEEEEEee
Confidence            75423344555555556799999999999 6899999999 664 6662          2222332 24567777643

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=99.82  E-value=5.7e-20  Score=149.03  Aligned_cols=138  Identities=22%  Similarity=0.258  Sum_probs=114.5

Q ss_pred             CCHHHHhhhccHHHHHHHHHHHHcCCCCCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCcEEEE
Q psy1959         134 MTFEHAASLADSYSTAQIVFSRHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALT  213 (296)
Q Consensus       134 ~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~~~~~  213 (296)
                      +|+++|| |.+++++||+++ +.+++++|++|+|+|+ |++|++++|+| +..|++|++++++++|+++++++|++..+.
T Consensus         1 VS~e~Aa-l~ePla~a~~a~-~~~~~~~g~~vlV~G~-G~vG~~~~~~a-k~~Ga~vi~v~~~~~r~~~a~~~ga~~~~~   76 (170)
T d1e3ja2           1 VSLEEGA-LLEPLSVGVHAC-RRAGVQLGTTVLVIGA-GPIGLVSVLAA-KAYGAFVVCTARSPRRLEVAKNCGADVTLV   76 (170)
T ss_dssp             SCHHHHH-THHHHHHHHHHH-HHHTCCTTCEEEEECC-SHHHHHHHHHH-HHTTCEEEEEESCHHHHHHHHHTTCSEEEE
T ss_pred             CCHHHHH-HHHHHHHHHHHH-HHhCCCCCCEEEEEcc-cccchhhHhhH-hhhcccccccchHHHHHHHHHHcCCcEEEe
Confidence            4788887 668999999999 6789999999999985 99999999999 678999999999999999999999998776


Q ss_pred             cCCc----hhHHHHHHHHhCCCcccEEEECCCC-ccHHHHHHHhhccCceEE----------eecccceeeeeEEeccc
Q psy1959         214 FTNE----KSLVNKVLEVSGGKYANVVFEAVGG-EDKTDLIRQKGAWAALTF----------TNEKSLVNKVLEVSGGK  277 (296)
Q Consensus       214 ~~~~----~~~~~~i~~~~~~~g~d~vld~~g~-~~~~~~~~~lg~~~g~~~----------~~~~~~~~k~~~i~g~~  277 (296)
                      ++..    .+..+.+.+. .+.++|++|||+|+ ..++.+++++ +++|++.          ++...++.|+++|.|++
T Consensus        77 ~~~~~~~~~~~~~~~~~~-~g~g~D~vid~~g~~~~~~~a~~~~-~~~G~iv~~G~~~~~~~~~~~~~~~k~i~i~gs~  153 (170)
T d1e3ja2          77 VDPAKEEESSIIERIRSA-IGDLPNVTIDCSGNEKCITIGINIT-RTGGTLMLVGMGSQMVTVPLVNACAREIDIKSVF  153 (170)
T ss_dssp             CCTTTSCHHHHHHHHHHH-SSSCCSEEEECSCCHHHHHHHHHHS-CTTCEEEECSCCSSCCCCCHHHHHTTTCEEEECC
T ss_pred             ccccccccchhhhhhhcc-cccCCceeeecCCChHHHHHHHHHH-hcCCceEEEecCCCCCCcCHHHHHHCCCEEEEEE
Confidence            5431    2333344443 35699999999999 5789999999 7777762          44557888999999986

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=99.82  E-value=1.3e-19  Score=147.87  Aligned_cols=142  Identities=20%  Similarity=0.225  Sum_probs=117.5

Q ss_pred             CHHHHhhhccHHHHHHHHHHHHcCCCCCcEEEEEcCCCcHHHHHHHHHHHhCC-CEEEEEeCCcchHHHHHhcCCcEEEE
Q psy1959         135 TFEHAASLADSYSTAQIVFSRHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYK-AKVIGVCNSEDKTDLIRQKGAWAALT  213 (296)
Q Consensus       135 ~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vlI~Ga~g~vG~aa~~la~~~~g-~~Vi~~~~~~~~~~~~~~~g~~~~~~  213 (296)
                      |+++||.|+++++|+|+++.+.+++++|++|+|+|+ |++|+++++++++ .| .+|++++++++|.++++++|++.+++
T Consensus         2 Ple~aa~l~ca~~Tay~al~~~~~vk~GdtVlV~Ga-GG~G~~~~~~~~~-~g~~~Vi~~~~~~~k~~~a~~~Ga~~~i~   79 (176)
T d2jhfa2           2 PLEKVCLIGCGFSTGYGSAVKVAKVTQGSTCAVFGL-GGVGLSVIMGCKA-AGAARIIGVDINKDKFAKAKEVGATECVN   79 (176)
T ss_dssp             CHHHHGGGGTHHHHHHHHHHTTTCCCTTCEEEEECC-SHHHHHHHHHHHH-TTCSEEEEECSCGGGHHHHHHTTCSEEEC
T ss_pred             CHHHHhHhhcHHHHHHHHHHHhhCCCCCCEEEEECC-CCcHHHHHHHHHH-cCCceEEeecCcHHHHHHHHHhCCeeEEe
Confidence            688999999999999999988999999999999998 8999999999954 55 59999999999999999999999998


Q ss_pred             cCCchhHHHHHHHHhCCCcccEEEECCCC-ccHHHHHHHhhccC-ceE-----------EeecccceeeeeEEeccccc
Q psy1959         214 FTNEKSLVNKVLEVSGGKYANVVFEAVGG-EDKTDLIRQKGAWA-ALT-----------FTNEKSLVNKVLEVSGGKYA  279 (296)
Q Consensus       214 ~~~~~~~~~~i~~~~~~~g~d~vld~~g~-~~~~~~~~~lg~~~-g~~-----------~~~~~~~~~k~~~i~g~~~~  279 (296)
                      +.+.++......+.+.+.|+|++||++|. ..++.++.++ +++ +.+           ......++.++++|.|+.+.
T Consensus        80 ~~~~~~~~~~~~~~~~~~G~D~vid~~G~~~~~~~a~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~Gs~~G  157 (176)
T d2jhfa2          80 PQDYKKPIQEVLTEMSNGGVDFSFEVIGRLDTMVTALSCC-QEAYGVSVIVGVPPDSQNLSMNPMLLLSGRTWKGAIFG  157 (176)
T ss_dssp             GGGCSSCHHHHHHHHTTSCBSEEEECSCCHHHHHHHHHHB-CTTTCEEEECSCCCTTCCEEECTHHHHTTCEEEECSGG
T ss_pred             cCCchhHHHHHHHHHhcCCCCEEEecCCchhHHHHHHHHH-hcCCcceEEecCCCCcccccccHHHHhCCCEEEEEEEe
Confidence            75434555556666666799999999999 5778899998 554 444           22233566789999998744

>d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: 2,4-dienoyl-CoA reductase
species: Yeast (Candida tropicalis) [TaxId: 5482]

Probab=99.82  E-value=2.4e-20  Score=154.06  Aligned_cols=145  Identities=17%  Similarity=0.228  Sum_probs=118.2

Q ss_pred             CCHHHHhhhccHHHHHHHHHHHHcCCCCCcEEEEE-cCCCcHHHHHHHHHHHhCCCEEEEEeCCcc----hHHHHHhcCC
Q psy1959         134 MTFEHAASLADSYSTAQIVFSRHAKLKEKQTVLVT-AAGGGLGLAAVDMATKIYKAKVIGVCNSED----KTDLIRQKGA  208 (296)
Q Consensus       134 ~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vlI~-Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~----~~~~~~~~g~  208 (296)
                      +|+++||+++++++|||++|.+..++++|++++|+ |++|++|++++|+| +.+|++||+++++.+    +.+.++++|+
T Consensus         1 ls~~~AA~l~~~~~TA~~~l~~~~~~~~g~~vli~~ga~g~vG~~aiqlA-k~~Ga~vI~~v~~~~~~~~~~~~~~~lGa   79 (189)
T d1gu7a2           1 LTINQGATISVNPLTAYLMLTHYVKLTPGKDWFIQNGGTSAVGKYASQIG-KLLNFNSISVIRDRPNLDEVVASLKELGA   79 (189)
T ss_dssp             CCHHHHHTCTTHHHHHHHHHHSSSCCCTTTCEEEESCTTSHHHHHHHHHH-HHHTCEEEEEECCCTTHHHHHHHHHHHTC
T ss_pred             CCHHHHHHhhhHHHHHHHHHHHHhCCCCCCEEEEEeCCCchHHHHHHHHH-hhcCCeEEEEEecccccchHHhhhhhccc
Confidence            68999999999999999999989999999988886 77899999999999 678999999986554    4567789999


Q ss_pred             cEEEEcCC--chhHHHHHHHHh--CCCcccEEEECCCCccHHHHHHHhhccCceEE-----------eecccceeeeeEE
Q psy1959         209 WAALTFTN--EKSLVNKVLEVS--GGKYANVVFEAVGGEDKTDLIRQKGAWAALTF-----------TNEKSLVNKVLEV  273 (296)
Q Consensus       209 ~~~~~~~~--~~~~~~~i~~~~--~~~g~d~vld~~g~~~~~~~~~~lg~~~g~~~-----------~~~~~~~~k~~~i  273 (296)
                      +.++++++  ..++.+.+.+.+  .+.++|++||++|++.+..++++| +++|++.           ++...++.|++++
T Consensus        80 d~vi~~~~~~~~~~~~~v~~~~~~~g~~vdvv~D~vg~~~~~~~~~~l-~~~G~~v~~G~~~~~~~~~~~~~l~~k~~~i  158 (189)
T d1gu7a2          80 TQVITEDQNNSREFGPTIKEWIKQSGGEAKLALNCVGGKSSTGIARKL-NNNGLMLTYGGMSFQPVTIPTSLYIFKNFTS  158 (189)
T ss_dssp             SEEEEHHHHHCGGGHHHHHHHHHHHTCCEEEEEESSCHHHHHHHHHTS-CTTCEEEECCCCSSCCEEECHHHHHHSCCEE
T ss_pred             cEEEeccccchhHHHHHHHHHHhhccCCceEEEECCCcchhhhhhhhh-cCCcEEEEECCccCCCccCcHHHHHHCCcEE
Confidence            99998753  134445555543  356899999999999999999999 8887763           3445677899999


Q ss_pred             ecccccc
Q psy1959         274 SGGKYAN  280 (296)
Q Consensus       274 ~g~~~~~  280 (296)
                      .|.+..+
T Consensus       159 ~G~~~~~  165 (189)
T d1gu7a2         159 AGFWVTE  165 (189)
T ss_dssp             EECCHHH
T ss_pred             EEEEehH
Confidence            9976544

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=99.81  E-value=8.5e-20  Score=149.04  Aligned_cols=144  Identities=20%  Similarity=0.221  Sum_probs=118.9

Q ss_pred             CCHHHHhhhccHHHHHHHHHHHHcCCCCCcEEEEEcCCCcHHHHHHHHHHHhCCC-EEEEEeCCcchHHHHHhcCCcEEE
Q psy1959         134 MTFEHAASLADSYSTAQIVFSRHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKA-KVIGVCNSEDKTDLIRQKGAWAAL  212 (296)
Q Consensus       134 ~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~-~Vi~~~~~~~~~~~~~~~g~~~~~  212 (296)
                      .+++.||.|++++.|+|+++.+.+++++|++|+|+|+ |++|+.++|+| +..|+ +|++++.+++|++.++++|++.++
T Consensus         2 ~P~e~aa~l~Ca~~T~~~Av~~~~~~~~g~tVlI~G~-GgvGl~ai~~a-k~~G~~~Vi~vd~~~~kl~~Ak~~GA~~~i   79 (176)
T d1d1ta2           2 APPEKVCLIGCGFSTGYGAAVKTGKVKPGSTCVVFGL-GGVGLSVIMGC-KSAGASRIIGIDLNKDKFEKAMAVGATECI   79 (176)
T ss_dssp             SCHHHHGGGGTHHHHHHHHHHTTSCCCTTCEEEEECC-SHHHHHHHHHH-HHTTCSEEEEECSCGGGHHHHHHHTCSEEE
T ss_pred             cCHHHHHhhhhHHHHHHHHHHHhhCCCCCCEEEEECC-CchhHHHHHHH-HHcCCceEEEecCcHHHHHHHHhcCCcEEE
Confidence            3689999999999999999988899999999999997 99999999999 56785 999999999999999999999999


Q ss_pred             EcCCchhHHHHHHHHhCCCcccEEEECCCC-ccHHHHHHHhhccCceEEee-----------cccceeeeeEEeccccc
Q psy1959         213 TFTNEKSLVNKVLEVSGGKYANVVFEAVGG-EDKTDLIRQKGAWAALTFTN-----------EKSLVNKVLEVSGGKYA  279 (296)
Q Consensus       213 ~~~~~~~~~~~i~~~~~~~g~d~vld~~g~-~~~~~~~~~lg~~~g~~~~~-----------~~~~~~k~~~i~g~~~~  279 (296)
                      ++++.....+.+.+.+.+.|+|++||++|. +.+..++..+.+.+|++.+-           ...++.++.+|.|+.+.
T Consensus        80 n~~~~~~~~~~~~~~~~g~G~d~vi~~~g~~~~~~~a~~~~~~~~G~~v~vG~~~~~~~~~~~~~~~~~~~~i~Gs~~G  158 (176)
T d1d1ta2          80 SPKDSTKPISEVLSEMTGNNVGYTFEVIGHLETMIDALASCHMNYGTSVVVGVPPSAKMLTYDPMLLFTGRTWKGCVFG  158 (176)
T ss_dssp             CGGGCSSCHHHHHHHHHTSCCCEEEECSCCHHHHHHHHTTSCTTTCEEEECSCCCTTCCEEECTHHHHTTCEEEECSGG
T ss_pred             CccccchHHHHHHHHhccccceEEEEeCCchHHHHHHHHHhhcCCeEEEEEEccccccccCCCHHHHhCCCEEEEEEEe
Confidence            987634446667777778899999999999 57888888884554655221           12345567888888743

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=99.81  E-value=7.8e-20  Score=148.07  Aligned_cols=136  Identities=19%  Similarity=0.187  Sum_probs=114.9

Q ss_pred             CCCHHHHhhhccHHHHHHHHHHHHcCCCCCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCcEEE
Q psy1959         133 KMTFEHAASLADSYSTAQIVFSRHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAAL  212 (296)
Q Consensus       133 ~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~~~~  212 (296)
                      +.+++.+|+|.++..|+|+++ +.+++++|++|+|+|+ |++|++++|+| +.+|+++++++++++++++++++|++.++
T Consensus         3 ~~~~a~~Apl~Cag~Tay~al-~~~~~~~G~~VlI~Ga-G~vG~~a~qla-k~~Ga~~i~~~~~~~~~~~a~~lGad~~i   79 (168)
T d1uufa2           3 QEQLAAVAPLLCAGITTYSPL-RHWQAGPGKKVGVVGI-GGLGHMGIKLA-HAMGAHVVAFTTSEAKREAAKALGADEVV   79 (168)
T ss_dssp             GGGHHHHGGGGTHHHHHHHHH-HHTTCCTTCEEEEECC-SHHHHHHHHHH-HHTTCEEEEEESSGGGHHHHHHHTCSEEE
T ss_pred             cccHHHHHHHHhHHHHHHHHH-HHhCCCCCCEEEEecc-chHHHHHHHHh-hcccccchhhccchhHHHHHhccCCcEEE
Confidence            346788899999999999999 6799999999999997 99999999999 67899999999999999999999999999


Q ss_pred             EcCCchhHHHHHHHHhCCCcccEEEECCCC-ccHHHHHHHhhccCceEE-----------eecccceeeeeEEecccc
Q psy1959         213 TFTNEKSLVNKVLEVSGGKYANVVFEAVGG-EDKTDLIRQKGAWAALTF-----------TNEKSLVNKVLEVSGGKY  278 (296)
Q Consensus       213 ~~~~~~~~~~~i~~~~~~~g~d~vld~~g~-~~~~~~~~~lg~~~g~~~-----------~~~~~~~~k~~~i~g~~~  278 (296)
                      ++.+ .+..     ....+++|++||++|+ ..++.+++++ +++|++.           ++...++.|+++|.|++.
T Consensus        80 ~~~~-~~~~-----~~~~~~~D~vid~~g~~~~~~~~~~~l-~~~G~iv~~G~~~~~~~~~~~~~l~~k~~~i~Gs~~  150 (168)
T d1uufa2          80 NSRN-ADEM-----AAHLKSFDFILNTVAAPHNLDDFTTLL-KRDGTMTLVGAPATPHKSPEVFNLIMKRRAIAGSMI  150 (168)
T ss_dssp             ETTC-HHHH-----HTTTTCEEEEEECCSSCCCHHHHHTTE-EEEEEEEECCCC-------CHHHHHTTTCEEEECCS
T ss_pred             ECch-hhHH-----HHhcCCCceeeeeeecchhHHHHHHHH-hcCCEEEEeccCCCCcccccHHHHHHCCcEEEEEee
Confidence            9877 3222     2334689999999998 5899999999 7777662           234467789999999873

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=99.81  E-value=1.3e-19  Score=147.53  Aligned_cols=144  Identities=17%  Similarity=0.129  Sum_probs=118.7

Q ss_pred             CHHHHhhhccHHHHHHHHHHHHcCCCCCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCcEEEEc
Q psy1959         135 TFEHAASLADSYSTAQIVFSRHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTF  214 (296)
Q Consensus       135 ~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~~~~~~  214 (296)
                      |+++||.|.+++.|+|+++.+.+++++|++|+|+|+ |++|+.+++++++..+.+|++++++++|++.++++|+++++++
T Consensus         2 P~e~aa~l~ca~~Tay~a~~~~a~~k~g~~VlI~G~-Gg~g~~~~~~~~~~g~~~Vi~~~~~~~rl~~a~~~GAd~~in~   80 (175)
T d1cdoa2           2 PLDTVCLLGCGVSTGFGAAVNTAKVEPGSTCAVFGL-GAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKVFGATDFVNP   80 (175)
T ss_dssp             CHHHHGGGGTHHHHHHHHHHTTTCCCTTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCCEEECG
T ss_pred             CHHHHHHhhcHHHHHHHHHHHhhCCCCCCEEEEEec-CCccchHHHHHHHHhhchheeecchHHHHHHHHHcCCcEEEcC
Confidence            688999999999999999988899999999999997 9999999999955445589999999999999999999999998


Q ss_pred             CCchhHHHHHHHHhCCCcccEEEECCCC-ccHHHHHHHhhccC-ceE----------EeecccceeeeeEEecccccc
Q psy1959         215 TNEKSLVNKVLEVSGGKYANVVFEAVGG-EDKTDLIRQKGAWA-ALT----------FTNEKSLVNKVLEVSGGKYAN  280 (296)
Q Consensus       215 ~~~~~~~~~i~~~~~~~g~d~vld~~g~-~~~~~~~~~lg~~~-g~~----------~~~~~~~~~k~~~i~g~~~~~  280 (296)
                      ++..+..+.+.+.+.+.|+|+++|++|+ +.+..++.++ .++ +..          .+....++.++++|.|+++.+
T Consensus        81 ~~~~~~~~~~~~~~~~~G~d~vid~~G~~~~~~~a~~~~-~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~i~Gs~~G~  157 (175)
T d1cdoa2          81 NDHSEPISQVLSKMTNGGVDFSLECVGNVGVMRNALESC-LKGWGVSVLVGWTDLHDVATRPIQLIAGRTWKGSMFGG  157 (175)
T ss_dssp             GGCSSCHHHHHHHHHTSCBSEEEECSCCHHHHHHHHHTB-CTTTCEEEECSCCSSSCEEECHHHHHTTCEEEECSGGG
T ss_pred             CCcchhHHHHHHhhccCCcceeeeecCCHHHHHHHHHHh-hCCCcceeEEEecCCcccCccHHHHHCCcEEEEEEEeC
Confidence            7534556677777767799999999999 5778888887 444 333          334445667888999987443

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.81  E-value=1e-19  Score=147.07  Aligned_cols=137  Identities=18%  Similarity=0.134  Sum_probs=118.8

Q ss_pred             CCHHHHhhhccHHHHHHHHHHHHcCCCCCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCcEEEE
Q psy1959         134 MTFEHAASLADSYSTAQIVFSRHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALT  213 (296)
Q Consensus       134 ~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~~~~~  213 (296)
                      ||+++||++++++.|||+++ +..++++|++|+|+|+ |++|+++++++ +..|++|++++++++|+++++++|++.+++
T Consensus         1 ls~eeAA~l~~~~~Ta~~al-~~~~~~~g~~vlv~G~-G~iG~~a~~~a-~~~g~~v~~~~~~~~r~~~~k~~Ga~~~~~   77 (168)
T d1rjwa2           1 LSFEEAAPIFCAGVTTYKAL-KVTGAKPGEWVAIYGI-GGLGHVAVQYA-KAMGLNVVAVDIGDEKLELAKELGADLVVN   77 (168)
T ss_dssp             SCHHHHGGGGTHHHHHHHHH-HHHTCCTTCEEEEECC-STTHHHHHHHH-HHTTCEEEEECSCHHHHHHHHHTTCSEEEC
T ss_pred             CCHHHHHHHHHHHHHHHHHH-HHhCCCCCCEEEEeec-ccchhhhhHHH-hcCCCeEeccCCCHHHhhhhhhcCcceecc
Confidence            68999999999999999999 5789999999999986 99999999999 668999999999999999999999999999


Q ss_pred             cCCchhHHHHHHHHhCCCcccEEEECCCC-ccHHHHHHHhhccCceE----------EeecccceeeeeEEeccc
Q psy1959         214 FTNEKSLVNKVLEVSGGKYANVVFEAVGG-EDKTDLIRQKGAWAALT----------FTNEKSLVNKVLEVSGGK  277 (296)
Q Consensus       214 ~~~~~~~~~~i~~~~~~~g~d~vld~~g~-~~~~~~~~~lg~~~g~~----------~~~~~~~~~k~~~i~g~~  277 (296)
                      +.+ .++.+.+++.+.  +.|.++++.++ +.++.+++++ +++|.+          .++...++.|++++.|++
T Consensus        78 ~~~-~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~a~~~l-~~~G~i~~~g~~~~~~~~~~~~~~~~~~~i~gs~  148 (168)
T d1rjwa2          78 PLK-EDAAKFMKEKVG--GVHAAVVTAVSKPAFQSAYNSI-RRGGACVLVGLPPEEMPIPIFDTVLNGIKIIGSI  148 (168)
T ss_dssp             TTT-SCHHHHHHHHHS--SEEEEEESSCCHHHHHHHHHHE-EEEEEEEECCCCSSEEEEEHHHHHHTTCEEEECC
T ss_pred             ccc-chhhhhcccccC--CCceEEeecCCHHHHHHHHHHh-ccCCceEecccccCCCCCCHHHHHHCCcEEEEEe
Confidence            988 788888888885  44445555555 7899999999 776665          455567888999999987

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=99.81  E-value=8.7e-20  Score=148.71  Aligned_cols=142  Identities=18%  Similarity=0.178  Sum_probs=114.3

Q ss_pred             HHHhhhccHHHHHHHHHHHHcCCCCCcEEEEEcCCCcHHHHHHHHHHHhCCC-EEEEEeCCcchHHHHHhcCCcEEEEcC
Q psy1959         137 EHAASLADSYSTAQIVFSRHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKA-KVIGVCNSEDKTDLIRQKGAWAALTFT  215 (296)
Q Consensus       137 ~~aa~l~~~~~ta~~~l~~~~~~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~-~Vi~~~~~~~~~~~~~~~g~~~~~~~~  215 (296)
                      .+||.|.+++.|+|+++.+.+++++|++|+|+|+ |++|++++|+| +..|+ +|++++++++|+++++++|++.+++++
T Consensus         3 ~eaa~lgCa~~Ta~~a~~~~a~~~~G~~VlV~Ga-GgvGl~a~~~a-k~~G~~~Vi~~d~~~~kl~~a~~lGa~~~i~~~   80 (174)
T d1p0fa2           3 LESCLIGCGFATGYGAAVNTAKVTPGSTCAVFGL-GGVGFSAIVGC-KAAGASRIIGVGTHKDKFPKAIELGATECLNPK   80 (174)
T ss_dssp             GGGGGGGTHHHHHHHHHHTTTCCCTTCEEEEECC-SHHHHHHHHHH-HHHTCSEEEEECSCGGGHHHHHHTTCSEEECGG
T ss_pred             HHHHhhhhHHHHHHHHHHHhhCCCCCCEEEEECC-CchhHHHHHHH-HHcCCceeeccCChHHHHHHHHHcCCcEEEcCC
Confidence            4588899999999999888899999999999997 99999999999 56776 899999999999999999999999986


Q ss_pred             CchhHHHHHHHHhCCCcccEEEECCCC-ccHHHHHHHhhccCceEEe----------ecc-cceeeeeEEecccccc
Q psy1959         216 NEKSLVNKVLEVSGGKYANVVFEAVGG-EDKTDLIRQKGAWAALTFT----------NEK-SLVNKVLEVSGGKYAN  280 (296)
Q Consensus       216 ~~~~~~~~i~~~~~~~g~d~vld~~g~-~~~~~~~~~lg~~~g~~~~----------~~~-~~~~k~~~i~g~~~~~  280 (296)
                      +.+.+.+...+.+.+.|+|++||++|+ +.+..++..+.+.+|.+.+          +.. .++.++++|.|+++..
T Consensus        81 ~~d~~~~~~~~~~~~~G~d~vid~~g~~~~~~~~~~~~~~~~G~~v~vG~~~~~~~~~~~~~~~~~~~~i~Gs~~G~  157 (174)
T d1p0fa2          81 DYDKPIYEVICEKTNGGVDYAVECAGRIETMMNALQSTYCGSGVTVVLGLASPNERLPLDPLLLLTGRSLKGSVFGG  157 (174)
T ss_dssp             GCSSCHHHHHHHHTTSCBSEEEECSCCHHHHHHHHHTBCTTTCEEEECCCCCTTCCEEECTHHHHTTCEEEECSGGG
T ss_pred             CchhHHHHHHHHhcCCCCcEEEEcCCCchHHHHHHHHHHHhcCceEEEEEecCccccccCHHHHhCCCEEEEEEeCC
Confidence            534444555555566799999999999 6888899888344466522          111 2345678999987443

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.81  E-value=6.8e-20  Score=148.46  Aligned_cols=136  Identities=14%  Similarity=0.031  Sum_probs=113.1

Q ss_pred             CCHHHHhhhccHHHHHHHHHHHHcCCCCCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCcEEEE
Q psy1959         134 MTFEHAASLADSYSTAQIVFSRHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALT  213 (296)
Q Consensus       134 ~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~~~~~  213 (296)
                      +|.+.||+|.+++.|+|+++ +.+++++|++|+|+|+ |++|++++|+| +.+|++|++++++++|+++++++|++.+++
T Consensus         1 lp~e~AApl~cag~Ta~~al-~~~~~~~g~~vlI~Ga-G~vG~~a~q~a-k~~G~~vi~~~~~~~k~~~a~~lGa~~~i~   77 (168)
T d1piwa2           1 IPSHLAAPLLCGGLTVYSPL-VRNGCGPGKKVGIVGL-GGIGSMGTLIS-KAMGAETYVISRSSRKREDAMKMGADHYIA   77 (168)
T ss_dssp             SCHHHHGGGGTHHHHHHHHH-HHTTCSTTCEEEEECC-SHHHHHHHHHH-HHHTCEEEEEESSSTTHHHHHHHTCSEEEE
T ss_pred             CCHHHHHHHHHHHHHHHHHH-HHhCcCCCCEEEEECC-CCcchhHHHHh-hhccccccccccchhHHHHhhccCCcEEee
Confidence            35677899999999999999 5789999999999997 99999999999 678999999999999999999999999998


Q ss_pred             cCCchhHHHHHHHHhCCCcccEEEECCCCc---cHHHHHHHhhccCceE----------EeecccceeeeeEEecccc
Q psy1959         214 FTNEKSLVNKVLEVSGGKYANVVFEAVGGE---DKTDLIRQKGAWAALT----------FTNEKSLVNKVLEVSGGKY  278 (296)
Q Consensus       214 ~~~~~~~~~~i~~~~~~~g~d~vld~~g~~---~~~~~~~~lg~~~g~~----------~~~~~~~~~k~~~i~g~~~  278 (296)
                      +.+..++.+   ..  .+++|+++||+++.   .++.+++++ +++|++          .++...++.|+++|.|++.
T Consensus        78 ~~~~~~~~~---~~--~~~~d~vi~~~~~~~~~~~~~~~~~l-~~~G~iv~~G~~~~~~~~~~~~~~~k~~~i~Gs~~  149 (168)
T d1piwa2          78 TLEEGDWGE---KY--FDTFDLIVVCASSLTDIDFNIMPKAM-KVGGRIVSISIPEQHEMLSLKPYGLKAVSISYSAL  149 (168)
T ss_dssp             GGGTSCHHH---HS--CSCEEEEEECCSCSTTCCTTTGGGGE-EEEEEEEECCCCCSSCCEEECGGGCBSCEEEECCC
T ss_pred             ccchHHHHH---hh--hcccceEEEEecCCccchHHHHHHHh-hccceEEEeccccccccccHHHHHhCCcEEEEEee
Confidence            865333332   22  35899999998862   478899999 777766          3455678889999999873

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=99.81  E-value=9.8e-20  Score=148.06  Aligned_cols=139  Identities=22%  Similarity=0.239  Sum_probs=118.5

Q ss_pred             HHHHhhhccHHHHHHHHHHHHc-CCCCCcEEEEEcCCCcHHHHHHHHHHHhCCC-EEEEEeCCcchHHHHHhcCCcEEEE
Q psy1959         136 FEHAASLADSYSTAQIVFSRHA-KLKEKQTVLVTAAGGGLGLAAVDMATKIYKA-KVIGVCNSEDKTDLIRQKGAWAALT  213 (296)
Q Consensus       136 ~~~aa~l~~~~~ta~~~l~~~~-~~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~-~Vi~~~~~~~~~~~~~~~g~~~~~~  213 (296)
                      +.++|+|+++++|||+++.+.. .+++|++|+|+|+ |++|++++|+++ ..|+ +|++++++++|+++++++|++.+++
T Consensus         6 l~eaA~l~~~~~Ta~~al~~~~~~~~~g~~vli~Ga-G~vG~~~~~~a~-~~g~~~vv~~~~~~~k~~~~~~~ga~~~i~   83 (172)
T d1h2ba2           6 LVEMAPLADAGITAYRAVKKAARTLYPGAYVAIVGV-GGLGHIAVQLLK-VMTPATVIALDVKEEKLKLAERLGADHVVD   83 (172)
T ss_dssp             HHHTGGGGTHHHHHHHHHHHHHTTCCTTCEEEEECC-SHHHHHHHHHHH-HHCCCEEEEEESSHHHHHHHHHTTCSEEEE
T ss_pred             HHHHhHHHhHHHHHHHHHHHhhhccCCCCEEEEeCC-ChHHHHHHHHHH-hhcCcccccccchhHHHHHHhhcccceeec
Confidence            5678899999999999997665 4899999999997 999999999995 4565 8888999999999999999999999


Q ss_pred             cCCchhHHHHHHHHhCCCcccEEEECCCC-ccHHHHHHHhhccCceEE---------eecccceeeeeEEeccccc
Q psy1959         214 FTNEKSLVNKVLEVSGGKYANVVFEAVGG-EDKTDLIRQKGAWAALTF---------TNEKSLVNKVLEVSGGKYA  279 (296)
Q Consensus       214 ~~~~~~~~~~i~~~~~~~g~d~vld~~g~-~~~~~~~~~lg~~~g~~~---------~~~~~~~~k~~~i~g~~~~  279 (296)
                      +++  +..+...+.+.++++|++||++|+ ..++.+++++ +++|++.         ++...++.|+++|.|++..
T Consensus        84 ~~~--~~~~~~~~~~~~~g~d~vid~~g~~~~~~~a~~~l-~~~G~iv~~G~~~~~~~~~~~l~~k~~~i~Gs~~~  156 (172)
T d1h2ba2          84 ARR--DPVKQVMELTRGRGVNVAMDFVGSQATVDYTPYLL-GRMGRLIIVGYGGELRFPTIRVISSEVSFEGSLVG  156 (172)
T ss_dssp             TTS--CHHHHHHHHTTTCCEEEEEESSCCHHHHHHGGGGE-EEEEEEEECCCSSCCCCCHHHHHHTTCEEEECCSC
T ss_pred             Ccc--cHHHHHHHhhCCCCceEEEEecCcchHHHHHHHHH-hCCCEEEEEeCcccccCCHHHHHhCCcEEEEEEec
Confidence            875  344556677888899999999999 5799999999 8887774         3456888999999999743

>d1o89a2 c.2.1.1 (A:116-292) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=99.76  E-value=9.8e-20  Score=148.64  Aligned_cols=137  Identities=16%  Similarity=0.192  Sum_probs=112.8

Q ss_pred             CCHHHHhhhccHHHHHHHHHH---HHcCCCCCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCcE
Q psy1959         134 MTFEHAASLADSYSTAQIVFS---RHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWA  210 (296)
Q Consensus       134 ~~~~~aa~l~~~~~ta~~~l~---~~~~~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~~  210 (296)
                      +|+.+||+|++++.|||++++   +....+++++|+|+|++|++|++++|+| +.+|++||+++++++|.++++++|++.
T Consensus         1 l~~~~Aa~lg~aGlTA~~a~~~l~~~g~~~~~~~vlV~gasGGVG~~aiQlA-k~~Ga~Via~~~~~~k~~~~~~lGad~   79 (177)
T d1o89a2           1 LDARKAMIIGTAGFTAMLCVMALEDAGVRPQDGEIVVTGASGGVGSTAVALL-HKLGYQVVAVSGRESTHEYLKSLGASR   79 (177)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHTTCCGGGCEEEESSTTSHHHHHHHHHH-HHTTCCEEEEESCGGGHHHHHHHTEEE
T ss_pred             CCHHHHHHcccHHHHHHHHHHHHHHhCCCCCCCcEEEEEccccchHHHHHHH-HHcCCCeEEEecchhHHHHHHhhcccc
Confidence            578999999999999998764   3334445679999999999999999999 679999999999999999999999999


Q ss_pred             EEEcCCchhHHHHHHHHhCCCcccEEEECCCCccHHHHHHHhhccCceEE-----------eecccceeeeeEEeccc
Q psy1959         211 ALTFTNEKSLVNKVLEVSGGKYANVVFEAVGGEDKTDLIRQKGAWAALTF-----------TNEKSLVNKVLEVSGGK  277 (296)
Q Consensus       211 ~~~~~~~~~~~~~i~~~~~~~g~d~vld~~g~~~~~~~~~~lg~~~g~~~-----------~~~~~~~~k~~~i~g~~  277 (296)
                      ++++++ .++.+.    ......|.++|++|++.+..+++++ +++|++.           ++...++.|++++.|..
T Consensus        80 vi~~~~-~~~~~~----l~~~~~~~vvD~Vgg~~~~~~l~~l-~~~Griv~~G~~~~~~~~~~~~~~~~k~~~i~G~~  151 (177)
T d1o89a2          80 VLPRDE-FAESRP----LEKQVWAGAIDTVGDKVLAKVLAQM-NYGGCVAACGLAGGFTLPTTVMPFILRNVRLQGVD  151 (177)
T ss_dssp             EEEGGG-SSSCCS----SCCCCEEEEEESSCHHHHHHHHHTE-EEEEEEEECCCTTCSCCCCCSHHHHHHCCEEEECC
T ss_pred             cccccc-HHHHHH----HHhhcCCeeEEEcchHHHHHHHHHh-ccccceEeecccCCccccccHHHHHHCCCeEEEEe
Confidence            999875 333221    2234679999999999999999999 8887773           23446778899999965

>d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative zinc-binding alcohol dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.76  E-value=1.1e-18  Score=143.62  Aligned_cols=123  Identities=21%  Similarity=0.329  Sum_probs=104.9

Q ss_pred             CCHHHHhhhccHHHHHHHHHHHHcCCCCC--cEEEEEcCCCcHHHHHHHHHHHhCCC-EEEEEeCCcchHH-HHHhcCCc
Q psy1959         134 MTFEHAASLADSYSTAQIVFSRHAKLKEK--QTVLVTAAGGGLGLAAVDMATKIYKA-KVIGVCNSEDKTD-LIRQKGAW  209 (296)
Q Consensus       134 ~~~~~aa~l~~~~~ta~~~l~~~~~~~~g--~~vlI~Ga~g~vG~aa~~la~~~~g~-~Vi~~~~~~~~~~-~~~~~g~~  209 (296)
                      +|....| |++++.|||++|.+.+++++|  ++|||+|++|++|++++|+| +..|+ +|+.++.++++.. ..+++|++
T Consensus         2 ~~~~~ga-lg~~glTA~~~l~~~~~~~~G~~etVLI~gaaGgVG~~aiQla-k~~Ga~~vi~~~~~~e~~~~l~~~~gad   79 (187)
T d1vj1a2           2 LSYFLGA-IGMPGLTSLIGVQEKGHISAGSNQTMVVSGAAGACGSLAGQIG-HLLGCSRVVGICGTQEKCLFLTSELGFD   79 (187)
T ss_dssp             GGGGGTT-TSHHHHHHHHHHHHHSCCCTTSCCEEEESSTTSTTGGGHHHHH-HHTTCSEEEEEESSHHHHHHHHHHSCCS
T ss_pred             ccHHHHH-hhcHHHHHHHHHHHHhCCCCCCCCEEEEECCCchhhHHHHHHH-HHcCCcceecccchHHHHhhhhhcccce
Confidence            4455544 788999999999999999988  89999999999999999999 67898 5666666666555 44579999


Q ss_pred             EEEEcCCchhHHHHHHHHhCCCcccEEEECCCCccHHHHHHHhhccCceEEe
Q psy1959         210 AALTFTNEKSLVNKVLEVSGGKYANVVFEAVGGEDKTDLIRQKGAWAALTFT  261 (296)
Q Consensus       210 ~~~~~~~~~~~~~~i~~~~~~~g~d~vld~~g~~~~~~~~~~lg~~~g~~~~  261 (296)
                      .++++++ +++.+.+++.++ +|+|++||++|++.+..+++++ +++|++..
T Consensus        80 ~vi~~~~-~~~~~~~~~~~~-~GvDvv~D~vGg~~~~~~~~~l-~~~G~iv~  128 (187)
T d1vj1a2          80 AAVNYKT-GNVAEQLREACP-GGVDVYFDNVGGDISNTVISQM-NENSHIIL  128 (187)
T ss_dssp             EEEETTS-SCHHHHHHHHCT-TCEEEEEESSCHHHHHHHHTTE-EEEEEEEE
T ss_pred             EEeeccc-hhHHHHHHHHhc-cCceEEEecCCchhHHHHhhhc-cccccEEE
Confidence            9999988 889999999874 7999999999999999999999 88887743

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=99.75  E-value=1.1e-17  Score=138.45  Aligned_cols=120  Identities=22%  Similarity=0.135  Sum_probs=108.3

Q ss_pred             HHHhhhccHHHHHHHHHHHHcCCCCCcEEEEEcCCCcHHHHHHHHHHHhCCC-EEEEEeCCcchHHHHHhcCCcEEEEcC
Q psy1959         137 EHAASLADSYSTAQIVFSRHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKA-KVIGVCNSEDKTDLIRQKGAWAALTFT  215 (296)
Q Consensus       137 ~~aa~l~~~~~ta~~~l~~~~~~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~-~Vi~~~~~~~~~~~~~~~g~~~~~~~~  215 (296)
                      ++.++|++.++|||+++ +.+++++|++|+|+|+ |++|++++++| +..|+ +|++++.+++|++.++++|++.++++.
T Consensus         2 ~d~~~l~d~~~ta~~a~-~~a~v~~G~tVlV~Ga-G~vGl~a~~~a-k~~ga~~Vi~~d~~~~rl~~a~~~Ga~~~~~~~   78 (195)
T d1kola2           2 RDLTCLSDILPTGYHGA-VTAGVGPGSTVYVAGA-GPVGLAAAASA-RLLGAAVVIVGDLNPARLAHAKAQGFEIADLSL   78 (195)
T ss_dssp             HHHGGGGTHHHHHHHHH-HHTTCCTTCEEEEECC-SHHHHHHHHHH-HHTTCSEEEEEESCHHHHHHHHHTTCEEEETTS
T ss_pred             chHHhcccHHHHHHHHH-HHhCCCCCCEEEEECc-CHHHHHHHHHH-HhhcccceeeecccchhhHhhhhccccEEEeCC
Confidence            56788999999999999 6799999999999997 99999999999 56777 999999999999999999999998887


Q ss_pred             CchhHHHHHHHHhCCCcccEEEECCCC----------------ccHHHHHHHhhccCceEEe
Q psy1959         216 NEKSLVNKVLEVSGGKYANVVFEAVGG----------------EDKTDLIRQKGAWAALTFT  261 (296)
Q Consensus       216 ~~~~~~~~i~~~~~~~g~d~vld~~g~----------------~~~~~~~~~lg~~~g~~~~  261 (296)
                      + .++.+.+.+.+++.++|++||++|.                +.++.+++++ +++|++.+
T Consensus        79 ~-~~~~~~i~~~t~g~g~D~vid~vG~~~~~~~~~~~~~~~~~~~l~~~~~~~-r~gG~v~~  138 (195)
T d1kola2          79 D-TPLHEQIAALLGEPEVDCAVDAVGFEARGHGHEGAKHEAPATVLNSLMQVT-RVAGKIGI  138 (195)
T ss_dssp             S-SCHHHHHHHHHSSSCEEEEEECCCTTCBCSSTTGGGSBCTTHHHHHHHHHE-EEEEEEEE
T ss_pred             C-cCHHHHHHHHhCCCCcEEEEECccccccCCcccceeecCcHHHHHHHHHHH-hcCCEEEE
Confidence            7 7899999999999999999999994                3689999999 88887743

>d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhfP
species: Bacillus subtilis [TaxId: 1423]

Probab=99.73  E-value=7.9e-19  Score=141.87  Aligned_cols=128  Identities=20%  Similarity=0.264  Sum_probs=104.7

Q ss_pred             HHHHHHHH---HHHHcCCCCCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCcEEEEcCCchhHH
Q psy1959         145 SYSTAQIV---FSRHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLV  221 (296)
Q Consensus       145 ~~~ta~~~---l~~~~~~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  221 (296)
                      ++.|||.+   |.+....+++++|||+|++|++|++++|+| +.+|++|+.++++++|.++++++|++.++++++   +.
T Consensus         4 aGlTA~~a~~~L~~~g~~~~~~~VLV~gaaGgVG~~avQlA-k~~Ga~Viat~~s~~k~~~~~~lGad~vi~~~~---~~   79 (167)
T d1tt7a2           4 AGFTAALSVHRLEQNGLSPEKGSVLVTGATGGVGGIAVSML-NKRGYDVVASTGNREAADYLKQLGASEVISRED---VY   79 (167)
T ss_dssp             HHHHHHHHHHHHHHTTCCGGGCCEEEESTTSHHHHHHHHHH-HHHTCCEEEEESSSSTHHHHHHHTCSEEEEHHH---HC
T ss_pred             hHHHHHHHHHHHHHhcCCCCCCEEEEeCCcchHHHHHHHHH-HHcCCceEEEecCHHHHHHHHhhcccceEeccc---hh
Confidence            45677654   444556777889999999999999999999 678999999999999999999999999987742   22


Q ss_pred             HHHHHHhCCCcccEEEECCCCccHHHHHHHhhccCceE-----------EeecccceeeeeEEeccc
Q psy1959         222 NKVLEVSGGKYANVVFEAVGGEDKTDLIRQKGAWAALT-----------FTNEKSLVNKVLEVSGGK  277 (296)
Q Consensus       222 ~~i~~~~~~~g~d~vld~~g~~~~~~~~~~lg~~~g~~-----------~~~~~~~~~k~~~i~g~~  277 (296)
                      ......+.++++|++||++|++.+..+++++ +++|++           .++...++.|++++.|..
T Consensus        80 ~~~~~~~~~~gvd~vid~vgg~~~~~~~~~l-~~~G~iv~~G~~~g~~~~~~~~~l~~k~~~i~G~~  145 (167)
T d1tt7a2          80 DGTLKALSKQQWQGAVDPVGGKQLASLLSKI-QYGGSVAVSGLTGGGEVPATVYPFILRGVSLLGID  145 (167)
T ss_dssp             SSCCCSSCCCCEEEEEESCCTHHHHHHHTTE-EEEEEEEECCCSSCSCEEECSHHHHTSCCEEEECC
T ss_pred             chhhhcccCCCceEEEecCcHHHHHHHHHHh-ccCceEEEeeccCCCcccCCHHHHHHCCcEEEEEe
Confidence            2233345567999999999999999999999 777766           445567888999999964

>d1o8ca2 c.2.1.1 (A:116-192) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=99.49  E-value=3.3e-14  Score=98.75  Aligned_cols=74  Identities=22%  Similarity=0.309  Sum_probs=67.1

Q ss_pred             CCHHHHhhhccHHHHHHHHHH---HHcCCCCCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCC
Q psy1959         134 MTFEHAASLADSYSTAQIVFS---RHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGA  208 (296)
Q Consensus       134 ~~~~~aa~l~~~~~ta~~~l~---~~~~~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~  208 (296)
                      +|++++++++.++.|||.+++   +....+++++|+|+|++|++|.+++|++ +..|++|++++++++|.++++++|+
T Consensus         1 ls~~eAa~lg~aGlTA~~al~~~~~~~~~~~~~~vlI~gasGgVG~~aiQla-k~~G~~Vi~~t~s~~k~~~~~~lGA   77 (77)
T d1o8ca2           1 LDARKAMIIGTAGFTAMLCVMALEDAGVRPQDGEIVVTGASGGVGSTAVALL-HKLGYQVVAVSGRESTHEYLKSLGA   77 (77)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHTTCCGGGCEEEESSTTSHHHHHHHHHH-HHTTCCEEEEESCGGGHHHHHHHTE
T ss_pred             CCHHHHHHhhhHHHHHHHHHHHHHhhhhccCCCcEEEEeCCCcHHHHHHHHH-HHcCCeEEEEECCHHHHHHHHHCCC
Confidence            588999999999999998765   4456789999999999999999999999 6789999999999999999999884

>d1v3va1 b.35.1.2 (A:1-112,A:295-329) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

Probab=99.37  E-value=2.2e-12  Score=100.99  Aligned_cols=114  Identities=13%  Similarity=0.098  Sum_probs=83.5

Q ss_pred             CCCCCCCCCCCCCCcEEEEeeeeecChhhHHHHcCCCCCCCCCCCcCCCceeEEEEEEccCCCCCCCCCCCCCCCCCCCE
Q psy1959          25 KPTLPLVPGFEFSGTIIEKKMMTRINSSDLLLYNGSGDAKPTLPLVPGFEFSGTVIEVADTKSSSTEEDDEEDVLQVGDK  104 (296)
Q Consensus        25 ~~~p~~~~~~~~~~evlvkv~~~~i~~~D~~~~~g~~~~~~~~p~~~G~e~~G~V~~v~~~~~~~~~~g~~v~~~~~Gd~  104 (296)
                      .+.|+|+++     |||||+.|.++++........     .....++..+.+|+|++-            +.++|++||+
T Consensus        27 ~~ip~~~~g-----evLvk~~~~svDp~~R~~~~~-----~~~g~~~~g~~vg~Vv~S------------~~~~f~~GD~   84 (147)
T d1v3va1          27 VELPPLKNG-----EVLLEALFLSVDPYMRIASKR-----LKEGAVMMGQQVARVVES------------KNSAFPAGSI   84 (147)
T ss_dssp             EECCCCCTT-----CEEEEEEEEECCTHHHHHGGG-----SCTTSBCCCCEEEEEEEE------------SCTTSCTTCE
T ss_pred             EECCCCCCC-----EEEEEEEEEeEcccccccccc-----cccCCccccceEEEEEEe------------CCCcccCCCE
Confidence            677888999     999999999998865433221     112334556788999865            4667999999


Q ss_pred             EEEecCCCCCcccceEeeeCCceEECCCCCCHH-----HHhhhccHHHH-HHHHHHHHcCCCCCcEEEE
Q psy1959         105 VLALNKELLHGFSDQCVVHTNDVFKIPEKMTFE-----HAASLADSYST-AQIVFSRHAKLKEKQTVLV  167 (296)
Q Consensus       105 V~~~~~~~~g~~~~~~~v~~~~~~~iP~~~~~~-----~aa~l~~~~~t-a~~~l~~~~~~~~g~~vlI  167 (296)
                      |.+.     ++|+||.+++.+.+.++|..++..     ..+++....+| ||..+  ....+.|++|++
T Consensus        85 V~g~-----~gw~ey~v~~~~~l~kv~~~~~~~~~~~~~~~~lG~~Gmtaay~gl--~~~~k~Getvv~  146 (147)
T d1v3va1          85 VLAQ-----SGWTTHFISDGKGLEKLLTEWPDKKIQYHEHVTKGFENMPAAFIEM--LNGANLGKAVVT  146 (147)
T ss_dssp             EEEC-----CCSBSEEEECSSSCEECCTTCCTTSSCCCEEEEECGGGHHHHHHHH--HTTCCSSEEEEE
T ss_pred             EEEc-----cCCEeEEEeccceeeEccccccccccchhhhHhccccchHHHHHHh--hCCCCCCCEEEe
Confidence            9874     679999999999999998765433     33456667776 55455  455678999986

>d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylene-tetrahydromethanopterin dehydrogenase
species: Methylobacterium extorquens [TaxId: 408]

Probab=97.75  E-value=0.0002  Score=57.06  Aligned_cols=75  Identities=20%  Similarity=0.133  Sum_probs=55.4

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhc-----CC-cEEEEcCCchhHHHHHHHHhCCCccc
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQK-----GA-WAALTFTNEKSLVNKVLEVSGGKYAN  234 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~-----g~-~~~~~~~~~~~~~~~i~~~~~~~g~d  234 (296)
                      +|++++|+|++|++|.++++.+ ...|++|+++++++++.+.+.+.     .. ....+..+    .+.+.+..  .++|
T Consensus        22 ~gK~vlItGasgGIG~~ia~~l-a~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~----~~~~~~~~--~~iD   94 (191)
T d1luaa1          22 KGKKAVVLAGTGPVGMRSAALL-AGEGAEVVLCGRKLDKAQAAADSVNKRFKVNVTAAETAD----DASRAEAV--KGAH   94 (191)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHH-HHTTCEEEEEESSHHHHHHHHHHHHHHHTCCCEEEECCS----HHHHHHHT--TTCS
T ss_pred             CCCEEEEECCCHHHHHHHHHHH-HhhccchhhcccchHHHHHHHHHHHhccchhhhhhhccc----HHHHHHHh--cCcC
Confidence            7999999999999999988777 45799999999999988766442     21 23344444    23344444  3799


Q ss_pred             EEEECCCC
Q psy1959         235 VVFEAVGG  242 (296)
Q Consensus       235 ~vld~~g~  242 (296)
                      ++|++.|.
T Consensus        95 ilin~Ag~  102 (191)
T d1luaa1          95 FVFTAGAI  102 (191)
T ss_dssp             EEEECCCT
T ss_pred             eeeecCcc
Confidence            99999874

>d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein TTHA0369
species: Thermus thermophilus [TaxId: 274]

Probab=97.73  E-value=4.2e-05  Score=63.87  Aligned_cols=81  Identities=19%  Similarity=0.096  Sum_probs=58.2

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCcEE-EEcCCchhHHHHHHHHhC-CCcccEEEE
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAA-LTFTNEKSLVNKVLEVSG-GKYANVVFE  238 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~i~~~~~-~~g~d~vld  238 (296)
                      +|++++|+|+++++|.+.++.+ ...|++|++.++++++.+.+++.+...+ .+..+..+..+.+.+... -..+|++++
T Consensus         4 ~GK~alITGas~GIG~aia~~l-a~~G~~V~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~G~iDiLVn   82 (248)
T d2d1ya1           4 AGKGVLVTGGARGIGRAIAQAF-AREGALVALCDLRPEGKEVAEAIGGAFFQVDLEDERERVRFVEEAAYALGRVDVLVN   82 (248)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHH-HHTTCEEEEEESSTTHHHHHHHHTCEEEECCTTCHHHHHHHHHHHHHHHSCCCEEEE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHH-HHCCCEEEEEECCHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHHHHHhcCCCCeEEE
Confidence            6899999999999999988777 4579999999999988888877765432 333442333333333221 136999999


Q ss_pred             CCCC
Q psy1959         239 AVGG  242 (296)
Q Consensus       239 ~~g~  242 (296)
                      +.|.
T Consensus        83 nAG~   86 (248)
T d2d1ya1          83 NAAI   86 (248)
T ss_dssp             CCCC
T ss_pred             eCcC
Confidence            9884

>d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Retinal dehydrogenase/reductase 3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.63  E-value=0.00018  Score=60.00  Aligned_cols=80  Identities=23%  Similarity=0.181  Sum_probs=56.5

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCcEE---EEcCCchhHHHHHHHHhC-CCcccEE
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAA---LTFTNEKSLVNKVLEVSG-GKYANVV  236 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~~~---~~~~~~~~~~~~i~~~~~-~~g~d~v  236 (296)
                      +|++++|+|+++++|.+.++.+ ...|++|++.++++++.+.+.+......   .+..+..+..+.+.+... -.++|++
T Consensus         5 ~GK~alITGas~GIG~aia~~l-a~~Ga~V~i~~r~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~iDil   83 (250)
T d1ydea1           5 AGKVVVVTGGGRGIGAGIVRAF-VNSGARVVICDKDESGGRALEQELPGAVFILCDVTQEDDVKTLVSETIRRFGRLDCV   83 (250)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHH-HHTTCEEEEEESCHHHHHHHHHHCTTEEEEECCTTSHHHHHHHHHHHHHHHSCCCEE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHH-HHCCCEEEEEECCHHHHHHHHHhcCCCeEEEccCCCHHHHHHHHHHHHHhcCCCCEE
Confidence            6899999999999999988877 4579999999999999888775433332   233332333333333321 1369999


Q ss_pred             EECCC
Q psy1959         237 FEAVG  241 (296)
Q Consensus       237 ld~~g  241 (296)
                      +++.|
T Consensus        84 VnnAG   88 (250)
T d1ydea1          84 VNNAG   88 (250)
T ss_dssp             EECCC
T ss_pred             Eeccc
Confidence            99988

>d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.57  E-value=0.00021  Score=59.20  Aligned_cols=78  Identities=18%  Similarity=0.180  Sum_probs=54.8

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHH-hcCCcEE--EEcCCchhHHHHHHHHhCCCcccEEE
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIR-QKGAWAA--LTFTNEKSLVNKVLEVSGGKYANVVF  237 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~-~~g~~~~--~~~~~~~~~~~~i~~~~~~~g~d~vl  237 (296)
                      +|++++|+|+++++|.++++.+ ...|++|++.++++++++.+. +......  .+..+ .+..+.+.+..  .++|+++
T Consensus         4 ~GK~alITGas~GIG~aia~~l-a~~Ga~V~~~~r~~~~l~~~~~~~~~~~~~~~Dv~~-~~~v~~~~~~~--g~iDilV   79 (242)
T d1cyda_           4 SGLRALVTGAGKGIGRDTVKAL-HASGAKVVAVTRTNSDLVSLAKECPGIEPVCVDLGD-WDATEKALGGI--GPVDLLV   79 (242)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHH-HHTTCEEEEEESCHHHHHHHHHHSTTCEEEECCTTC-HHHHHHHHTTC--CCCSEEE
T ss_pred             CCCEEEEeCCCcHHHHHHHHHH-HHCCCEEEEEECCHHHHHHHHHhcCCCeEEEEeCCC-HHHHHHHHHHc--CCCeEEE
Confidence            6899999999999999988777 457999999999998887665 4433232  23334 22222232222  3699999


Q ss_pred             ECCCC
Q psy1959         238 EAVGG  242 (296)
Q Consensus       238 d~~g~  242 (296)
                      ++.|.
T Consensus        80 nnAg~   84 (242)
T d1cyda_          80 NNAAL   84 (242)
T ss_dssp             ECCCC
T ss_pred             ECCcc
Confidence            99884

>d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.56  E-value=0.00022  Score=59.07  Aligned_cols=78  Identities=18%  Similarity=0.252  Sum_probs=55.8

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHh-cCCcEE--EEcCCchhHHHHHHHHhCCCcccEEE
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQ-KGAWAA--LTFTNEKSLVNKVLEVSGGKYANVVF  237 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~-~g~~~~--~~~~~~~~~~~~i~~~~~~~g~d~vl  237 (296)
                      +|++++|+|+++++|.+.++.+ ...|++|+.+++++++++.+.+ .+....  .+..+ .+..+.+.+..  ..+|+++
T Consensus         6 ~GK~~lITGas~GIG~aia~~l-a~~G~~V~~~~r~~~~l~~~~~~~~~~~~~~~Dv~d-~~~v~~~~~~~--g~iDilV   81 (244)
T d1pr9a_           6 AGRRVLVTGAGKGIGRGTVQAL-HATGARVVAVSRTQADLDSLVRECPGIEPVCVDLGD-WEATERALGSV--GPVDLLV   81 (244)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHH-HHTTCEEEEEESCHHHHHHHHHHSTTCEEEECCTTC-HHHHHHHHTTC--CCCCEEE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHH-HHcCCEEEEEECCHHHHHHHHHhcCCCeEEEEeCCC-HHHHHHHHHHh--CCceEEE
Confidence            7899999999999999988777 4579999999999998876654 433332  33344 22233333322  3699999


Q ss_pred             ECCCC
Q psy1959         238 EAVGG  242 (296)
Q Consensus       238 d~~g~  242 (296)
                      ++.|.
T Consensus        82 nnAg~   86 (244)
T d1pr9a_          82 NNAAV   86 (244)
T ss_dssp             ECCCC
T ss_pred             ecccc
Confidence            99884

>d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus [TaxId: 274]

Probab=97.55  E-value=0.00031  Score=58.06  Aligned_cols=81  Identities=19%  Similarity=0.192  Sum_probs=57.3

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHh-cCCcEE-EEcCCchhHHHHHHHHhC-CCcccEEE
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQ-KGAWAA-LTFTNEKSLVNKVLEVSG-GKYANVVF  237 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~-~g~~~~-~~~~~~~~~~~~i~~~~~-~~g~d~vl  237 (296)
                      +|++++|+|+++++|.+.++.+ ...|++|+..++++++.+.+.+ ++...+ .+..+.++..+.+.+... -..+|+++
T Consensus         4 ~gK~~lITGas~GIG~aia~~l-~~~G~~V~~~~r~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iDilV   82 (242)
T d1ulsa_           4 KDKAVLITGAAHGIGRATLELF-AKEGARLVACDIEEGPLREAAEAVGAHPVVMDVADPASVERGFAEALAHLGRLDGVV   82 (242)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHH-HHTTCEEEEEESCHHHHHHHHHTTTCEEEECCTTCHHHHHHHHHHHHHHHSSCCEEE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHH-HHCCCEEEEEECCHHHHHHHHHHcCCeEEEEecCCHHHHHHHHHHHHHhcCCceEEE
Confidence            5899999999999999988777 4579999999999998887765 444332 333442333333333221 12699999


Q ss_pred             ECCCC
Q psy1959         238 EAVGG  242 (296)
Q Consensus       238 d~~g~  242 (296)
                      ++.|.
T Consensus        83 nnAG~   87 (242)
T d1ulsa_          83 HYAGI   87 (242)
T ss_dssp             ECCCC
T ss_pred             ECCcc
Confidence            99884

>d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Escherichia coli [TaxId: 562]

Probab=97.50  E-value=8.5e-05  Score=61.67  Aligned_cols=81  Identities=27%  Similarity=0.327  Sum_probs=56.7

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHh-cCCcE---EEEcCCchhHHHHHHHHhC-CCcccE
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQ-KGAWA---ALTFTNEKSLVNKVLEVSG-GKYANV  235 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~-~g~~~---~~~~~~~~~~~~~i~~~~~-~~g~d~  235 (296)
                      +|++++|+|+++++|.+.++.+ ...|++|+..++++++.+.+.+ ++...   ..+..+..+..+.+.+... -.++|+
T Consensus         3 ~gK~alITGas~GIG~a~a~~l-~~~G~~Vv~~~r~~~~l~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iDi   81 (243)
T d1q7ba_           3 EGKIALVTGASRGIGRAIAETL-AARGAKVIGTATSENGAQAISDYLGANGKGLMLNVTDPASIESVLEKIRAEFGEVDI   81 (243)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHH-HHTTCEEEEEESSHHHHHHHHHHHGGGEEEEECCTTCHHHHHHHHHHHHHHTCSCSE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHH-HHcCCEEEEEeCCHHHHHHHHHHhCCCCcEEEEEecCHHHhhhhhhhhhcccCCcce
Confidence            5899999999999999988777 4579999999999998876653 44332   2333442333333333321 237999


Q ss_pred             EEECCCC
Q psy1959         236 VFEAVGG  242 (296)
Q Consensus       236 vld~~g~  242 (296)
                      ++++.|.
T Consensus        82 lVnnAg~   88 (243)
T d1q7ba_          82 LVNNAGI   88 (243)
T ss_dssp             EEECCCC
T ss_pred             ehhhhhh
Confidence            9999874

>d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 17-beta-hydroxysteroid dehydrogenase type XI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.45  E-value=0.00023  Score=58.98  Aligned_cols=81  Identities=17%  Similarity=0.163  Sum_probs=55.8

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHH----hcCCcEE---EEcCCchhHHHHHHHHh-CCCc
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIR----QKGAWAA---LTFTNEKSLVNKVLEVS-GGKY  232 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~----~~g~~~~---~~~~~~~~~~~~i~~~~-~~~g  232 (296)
                      .|++++|+|+++++|.+.+..+ ...|++|+++++++++++.+.    +.|....   .+..+.++..+.+.+.. ....
T Consensus         6 ~Gkv~lITGas~GIG~~ia~~l-a~~G~~V~l~~r~~~~l~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~i~~~~g~   84 (244)
T d1yb1a_           6 TGEIVLITGAGHGIGRLTAYEF-AKLKSKLVLWDINKHGLEETAAKCKGLGAKVHTFVVDCSNREDIYSSAKKVKAEIGD   84 (244)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHH-HHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHTCC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHH-HHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHHHHcCC
Confidence            6899999999999999866666 347999999999998876553    3454433   23344233333443332 1236


Q ss_pred             ccEEEECCCC
Q psy1959         233 ANVVFEAVGG  242 (296)
Q Consensus       233 ~d~vld~~g~  242 (296)
                      +|+++++.|.
T Consensus        85 idilinnag~   94 (244)
T d1yb1a_          85 VSILVNNAGV   94 (244)
T ss_dssp             CSEEEECCCC
T ss_pred             CceeEeeccc
Confidence            9999999985

>d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative oxidoreductase Rv2002
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.44  E-value=0.00039  Score=57.59  Aligned_cols=81  Identities=17%  Similarity=0.081  Sum_probs=56.4

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHH-hcCCcEE---EEcCCchhHHHHHHHHhC-CCcccE
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIR-QKGAWAA---LTFTNEKSLVNKVLEVSG-GKYANV  235 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~-~~g~~~~---~~~~~~~~~~~~i~~~~~-~~g~d~  235 (296)
                      +|++++|+|+++++|++.++.+ ...|++|++.++++++.+.+. +++....   .+..+..+..+.+.+... -..+|+
T Consensus         5 ~gK~alITGas~GIG~aia~~l-a~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~idi   83 (244)
T d1nffa_           5 TGKVALVSGGARGMGASHVRAM-VAEGAKVVFGDILDEEGKAMAAELADAARYVHLDVTQPAQWKAAVDTAVTAFGGLHV   83 (244)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHH-HHTTCEEEEEESCHHHHHHHHHHTGGGEEEEECCTTCHHHHHHHHHHHHHHHSCCCE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHH-HHCCCEEEEEECCHHHHHHHHHHhhCcceEEEeecCCHHHHHHHHHHHHHHhCCCeE
Confidence            6899999999999999988777 457999999999999887665 4443322   233342333333333321 136999


Q ss_pred             EEECCCC
Q psy1959         236 VFEAVGG  242 (296)
Q Consensus       236 vld~~g~  242 (296)
                      ++++.|.
T Consensus        84 linnAG~   90 (244)
T d1nffa_          84 LVNNAGI   90 (244)
T ss_dssp             EEECCCC
T ss_pred             EEECCcc
Confidence            9999985

>d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sorbitol dehydrogenase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=97.44  E-value=0.00032  Score=58.44  Aligned_cols=81  Identities=17%  Similarity=0.126  Sum_probs=57.1

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHH-hcCCcEEE---EcCCchhHHHHHHHHhC-CCcccE
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIR-QKGAWAAL---TFTNEKSLVNKVLEVSG-GKYANV  235 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~-~~g~~~~~---~~~~~~~~~~~i~~~~~-~~g~d~  235 (296)
                      +|++++|+|+++++|+++++.+ ...|++|++.++++++.+.+. +++.....   +..+..+..+.+.+... -..+|+
T Consensus         4 ~gK~alVTGas~GIG~aia~~l-a~~Ga~V~~~~r~~~~l~~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~~~~~g~iDi   82 (256)
T d1k2wa_           4 DGKTALITGSARGIGRAFAEAY-VREGARVAIADINLEAARATAAEIGPAACAIALDVTDQASIDRCVAELLDRWGSIDI   82 (256)
T ss_dssp             TTEEEEEETCSSHHHHHHHHHH-HHTTEEEEEEESCHHHHHHHHHHHCTTEEEEECCTTCHHHHHHHHHHHHHHHSCCCE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHH-HHCCCEEEEEECCHHHHHHHHHHhCCceEEEEeeCCCHHHHHHHHHHHHHHhCCccE
Confidence            5899999999999999988777 457999999999988877554 56654432   33342333333333321 137999


Q ss_pred             EEECCCC
Q psy1959         236 VFEAVGG  242 (296)
Q Consensus       236 vld~~g~  242 (296)
                      ++++.|.
T Consensus        83 lVnnAg~   89 (256)
T d1k2wa_          83 LVNNAAL   89 (256)
T ss_dssp             EEECCCC
T ss_pred             EEeeccc
Confidence            9999984

>d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), II [TaxId: 4076]

Probab=97.44  E-value=0.0002  Score=59.92  Aligned_cols=81  Identities=19%  Similarity=0.179  Sum_probs=55.9

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHH----hcCCcEE---EEcCCchhHHHHHHHHhC--CC
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIR----QKGAWAA---LTFTNEKSLVNKVLEVSG--GK  231 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~----~~g~~~~---~~~~~~~~~~~~i~~~~~--~~  231 (296)
                      +|++++|+|+++++|.+.++.+ ...|++|++.++++++++.+.    +.+....   .+..+..+..+.+.+...  +.
T Consensus         7 ~GK~alITGas~GIG~aia~~l-a~~Ga~V~~~~r~~~~l~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~~~   85 (259)
T d2ae2a_           7 EGCTALVTGGSRGIGYGIVEEL-ASLGASVYTCSRNQKELNDCLTQWRSKGFKVEASVCDLSSRSERQELMNTVANHFHG   85 (259)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHH-HHTTCEEEEEESCHHHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHHTTT
T ss_pred             CCCEEEEeCCCCHHHHHHHHHH-HHCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEeeCCCHHHHHHHHHHHHHHhCC
Confidence            6899999999999999987777 447999999999988876553    3354332   223332333333333322  23


Q ss_pred             cccEEEECCCC
Q psy1959         232 YANVVFEAVGG  242 (296)
Q Consensus       232 g~d~vld~~g~  242 (296)
                      .+|+++++.|.
T Consensus        86 ~idilvnnAG~   96 (259)
T d2ae2a_          86 KLNILVNNAGI   96 (259)
T ss_dssp             CCCEEEECCCC
T ss_pred             CceEEEECCce
Confidence            69999999984

>d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase
species: Streptomyces hydrogenans [TaxId: 1905]

Probab=97.42  E-value=0.00041  Score=57.77  Aligned_cols=81  Identities=21%  Similarity=0.148  Sum_probs=56.1

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHH-hcCCcEE---EEcCCchhHHHHHHHHhC-CCcccE
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIR-QKGAWAA---LTFTNEKSLVNKVLEVSG-GKYANV  235 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~-~~g~~~~---~~~~~~~~~~~~i~~~~~-~~g~d~  235 (296)
                      +|++++|+|+++++|++.++.+ ...|++|+..++++++.+.+. +++....   .+..+..+..+.+.+... -..+|+
T Consensus         4 ~gK~alVTGas~GIG~aia~~l-a~~Ga~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iDi   82 (254)
T d1hdca_           4 SGKTVIITGGARGLGAEAARQA-VAAGARVVLADVLDEEGAATARELGDAARYQHLDVTIEEDWQRVVAYAREEFGSVDG   82 (254)
T ss_dssp             CCSEEEEETTTSHHHHHHHHHH-HHTTCEEEEEESCHHHHHHHHHTTGGGEEEEECCTTCHHHHHHHHHHHHHHHSCCCE
T ss_pred             CCCEEEEeCcCCHHHHHHHHHH-HHCCCEEEEEECCHHHHHHHHHHhCCceEEEEcccCCHHHHHHHHHHHHHHcCCccE
Confidence            6899999999999999988777 457999999999988877664 4554332   233332333333333221 126999


Q ss_pred             EEECCCC
Q psy1959         236 VFEAVGG  242 (296)
Q Consensus       236 vld~~g~  242 (296)
                      ++++.|.
T Consensus        83 lVnnAg~   89 (254)
T d1hdca_          83 LVNNAGI   89 (254)
T ss_dssp             EEECCCC
T ss_pred             EEecCcc
Confidence            9999884

>d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3beta/17beta hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=97.42  E-value=0.00037  Score=58.04  Aligned_cols=81  Identities=21%  Similarity=0.177  Sum_probs=56.4

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHH-hcCCcEEE---EcCCchhHHHHHHHHhC-CCcccE
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIR-QKGAWAAL---TFTNEKSLVNKVLEVSG-GKYANV  235 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~-~~g~~~~~---~~~~~~~~~~~i~~~~~-~~g~d~  235 (296)
                      +|++++|+|+++++|.+.++.+ ...|++|+..++++++.+.+. +++.....   +..+..+..+.+.+... -..+|+
T Consensus         5 ~gK~alITGas~GIG~aia~~l-a~~Ga~V~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~g~iDi   83 (253)
T d1hxha_           5 QGKVALVTGGASGVGLEVVKLL-LGEGAKVAFSDINEAAGQQLAAELGERSMFVRHDVSSEADWTLVMAAVQRRLGTLNV   83 (253)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHH-HHTTCEEEEECSCHHHHHHHHHHHCTTEEEECCCTTCHHHHHHHHHHHHHHHCSCCE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHH-HHCCCEEEEEECCHHHHHHHHHHhCCCeEEEEeecCCHHHHHHHHHHHHHHhCCCCe
Confidence            6899999999999999988877 457999999999998877664 45654433   22332333333333221 136899


Q ss_pred             EEECCCC
Q psy1959         236 VFEAVGG  242 (296)
Q Consensus       236 vld~~g~  242 (296)
                      ++++.|.
T Consensus        84 lVnnAG~   90 (253)
T d1hxha_          84 LVNNAGI   90 (253)
T ss_dssp             EEECCCC
T ss_pred             EEecccc
Confidence            9999984

>d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), I [TaxId: 4076]

Probab=97.41  E-value=0.00052  Score=57.27  Aligned_cols=81  Identities=22%  Similarity=0.227  Sum_probs=55.1

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHH----HhcCCcEEE---EcCCchhHHHHHHHHhC--CC
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLI----RQKGAWAAL---TFTNEKSLVNKVLEVSG--GK  231 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~----~~~g~~~~~---~~~~~~~~~~~i~~~~~--~~  231 (296)
                      +|++++|+|+++++|.+.++.+ ...|++|+.+++++++++.+    ++.+.....   +..+..+..+.+.+...  +.
T Consensus         5 ~gK~alITGas~GIG~aia~~l-a~~G~~V~i~~r~~~~l~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~g   83 (258)
T d1ae1a_           5 KGTTALVTGGSKGIGYAIVEEL-AGLGARVYTCSRNEKELDECLEIWREKGLNVEGSVCDLLSRTERDKLMQTVAHVFDG   83 (258)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHH-HHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHTTS
T ss_pred             CCCEEEEeCCCCHHHHHHHHHH-HHCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEeecCCHHHHHHHHHHHHHHhCC
Confidence            7899999999999999988666 34799999999998876654    344554432   33332333333333221  23


Q ss_pred             cccEEEECCCC
Q psy1959         232 YANVVFEAVGG  242 (296)
Q Consensus       232 g~d~vld~~g~  242 (296)
                      .+|+++++.|.
T Consensus        84 ~idilinnag~   94 (258)
T d1ae1a_          84 KLNILVNNAGV   94 (258)
T ss_dssp             CCCEEEECCCC
T ss_pred             CcEEEeccccc
Confidence            58999999885

>d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase
species: Pseudomonas sp., lb400 [TaxId: 306]

Probab=97.39  E-value=0.00036  Score=58.86  Aligned_cols=80  Identities=19%  Similarity=0.156  Sum_probs=55.6

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHH-hcCCcEE---EEcCCchhHHHHHHHHhC-CCcccE
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIR-QKGAWAA---LTFTNEKSLVNKVLEVSG-GKYANV  235 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~-~~g~~~~---~~~~~~~~~~~~i~~~~~-~~g~d~  235 (296)
                      +|++++|+|+++++|+++++.+ ...|++|+++++++++++.+. +++....   .+..+..+..+.+.+... -..+|+
T Consensus         4 ~gK~alITGas~GIG~aia~~l-a~~Ga~V~i~~r~~~~l~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~g~idi   82 (276)
T d1bdba_           4 KGEAVLITGGASGLGRALVDRF-VAEGAKVAVLDKSAERLAELETDHGDNVLGIVGDVRSLEDQKQAASRCVARFGKIDT   82 (276)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHH-HHTTCEEEEEESCHHHHHHHHHHHGGGEEEEECCTTCHHHHHHHHHHHHHHHSCCCE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHH-HHCCCEEEEEECCHHHHHHHHHHcCCCeeEEecccccHHHHHHHHHHHHHHhCCccc
Confidence            6899999999999999987777 457999999999999887664 4554332   233332333333333211 136999


Q ss_pred             EEECCC
Q psy1959         236 VFEAVG  241 (296)
Q Consensus       236 vld~~g  241 (296)
                      ++++.|
T Consensus        83 lvnnAG   88 (276)
T d1bdba_          83 LIPNAG   88 (276)
T ss_dssp             EECCCC
T ss_pred             cccccc
Confidence            999987

>d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Xylitol dehydrogenase
species: Gluconobacter oxydans [TaxId: 442]

Probab=97.39  E-value=0.00052  Score=57.25  Aligned_cols=81  Identities=22%  Similarity=0.232  Sum_probs=55.0

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHH----hcCCcEE---EEcCCchhHHHHHHHHhC-CCc
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIR----QKGAWAA---LTFTNEKSLVNKVLEVSG-GKY  232 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~----~~g~~~~---~~~~~~~~~~~~i~~~~~-~~g  232 (296)
                      +|++++|+|+++++|+++++.+ ...|++|+++++++++++.+.    +.|....   .+..+..+..+.+.+... -..
T Consensus         4 ~gK~alITGas~GIG~aia~~l-a~~Ga~V~~~~r~~~~l~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~   82 (260)
T d1zema1           4 NGKVCLVTGAGGNIGLATALRL-AEEGTAIALLDMNREALEKAEASVREKGVEARSYVCDVTSEEAVIGTVDSVVRDFGK   82 (260)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHH-HHTTCEEEEEESCHHHHHHHHHHHHTTTSCEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHH-HHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHhCC
Confidence            6899999999999999977766 457999999999988776553    3454433   233332333333333221 136


Q ss_pred             ccEEEECCCC
Q psy1959         233 ANVVFEAVGG  242 (296)
Q Consensus       233 ~d~vld~~g~  242 (296)
                      +|+++++.|.
T Consensus        83 iDilVnnaG~   92 (260)
T d1zema1          83 IDFLFNNAGY   92 (260)
T ss_dssp             CCEEEECCCC
T ss_pred             CCeehhhhcc
Confidence            9999998873

>d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 7-alpha-hydroxysteroid dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=97.38  E-value=0.00049  Score=57.32  Aligned_cols=81  Identities=20%  Similarity=0.213  Sum_probs=55.4

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHH----HhcCCcEEE---EcCCchhHHHHHHHHhC-CCc
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLI----RQKGAWAAL---TFTNEKSLVNKVLEVSG-GKY  232 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~----~~~g~~~~~---~~~~~~~~~~~i~~~~~-~~g  232 (296)
                      +|++++|+|+++++|.+.++.+ ...|++|+++++++++.+.+    ++.|.....   +..+..+..+.+.+... -..
T Consensus        10 ~gK~alITGas~GIG~aia~~l-a~~Ga~V~~~~r~~~~~~~~~~~l~~~g~~~~~~~~Dvs~~~~~~~~~~~~~~~~g~   88 (255)
T d1fmca_          10 DGKCAIITGAGAGIGKEIAITF-ATAGASVVVSDINADAANHVVDEIQQLGGQAFACRCDITSEQELSALADFAISKLGK   88 (255)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHH-HTTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHSS
T ss_pred             CCCEEEEeCCCcHHHHHHHHHH-HHCCCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence            6899999999999999988777 45799999999998876654    344544332   22332333333333221 126


Q ss_pred             ccEEEECCCC
Q psy1959         233 ANVVFEAVGG  242 (296)
Q Consensus       233 ~d~vld~~g~  242 (296)
                      +|+++++.|.
T Consensus        89 iDilvnnAG~   98 (255)
T d1fmca_          89 VDILVNNAGG   98 (255)
T ss_dssp             CCEEEECCCC
T ss_pred             CCEeeeCCcC
Confidence            9999999885

>d2ag5a1 c.2.1.2 (A:1-245) Dehydrogenase/reductase SDR family member 6, DHRS6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dehydrogenase/reductase SDR family member 6, DHRS6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.38  E-value=0.00025  Score=58.83  Aligned_cols=78  Identities=24%  Similarity=0.274  Sum_probs=57.6

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCcEE--EEcCCchhHHHHHHHHhCCCcccEEEE
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAA--LTFTNEKSLVNKVLEVSGGKYANVVFE  238 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~~~--~~~~~~~~~~~~i~~~~~~~g~d~vld  238 (296)
                      +|++++|+|+++++|.+.++.+ ...|++|+.+++++++++.+.+......  .+... .+..+.+.+..  .++|++++
T Consensus         5 ~gK~alITGas~GIG~aia~~l-a~~G~~Vi~~~r~~~~l~~~~~~~~~~~~~~d~~~-~~~~~~~~~~~--~~id~lVn   80 (245)
T d2ag5a1           5 DGKVIILTAAAQGIGQAAALAF-AREGAKVIATDINESKLQELEKYPGIQTRVLDVTK-KKQIDQFANEV--ERLDVLFN   80 (245)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHH-HHTTCEEEEEESCHHHHGGGGGSTTEEEEECCTTC-HHHHHHHHHHC--SCCSEEEE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHH-HHcCCEEEEEeCCHHHHHHHHhccCCceeeeeccc-ccccccccccc--ccceeEEe
Confidence            6899999999999999988888 4579999999999988887766533332  22222 44444444443  37999999


Q ss_pred             CCCC
Q psy1959         239 AVGG  242 (296)
Q Consensus       239 ~~g~  242 (296)
                      +.|.
T Consensus        81 ~ag~   84 (245)
T d2ag5a1          81 VAGF   84 (245)
T ss_dssp             CCCC
T ss_pred             cccc
Confidence            9884

>d1yo6a1 c.2.1.2 (A:1-250) Putative carbonyl reductase sniffer {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative carbonyl reductase sniffer
species: Caenorhabditis elegans [TaxId: 6239]

Probab=97.37  E-value=0.00029  Score=58.37  Aligned_cols=80  Identities=28%  Similarity=0.359  Sum_probs=55.0

Q ss_pred             CcEEEEEcCCCcHHHHHHHHHHHhCCC--EEEEEeCCcchHHHHHhcC-CcE-E--EEcCCchh---HHHHHHHHhCCCc
Q psy1959         162 KQTVLVTAAGGGLGLAAVDMATKIYKA--KVIGVCNSEDKTDLIRQKG-AWA-A--LTFTNEKS---LVNKVLEVSGGKY  232 (296)
Q Consensus       162 g~~vlI~Ga~g~vG~aa~~la~~~~g~--~Vi~~~~~~~~~~~~~~~g-~~~-~--~~~~~~~~---~~~~i~~~~~~~g  232 (296)
                      .++|||+|+++++|++.++.+ ...|+  +|+...+++++.+.+++.. ... .  .+..+.++   +.+.+.+..+..+
T Consensus         3 ~KtilITGassGIG~a~a~~l-a~~G~~~~Vi~~~R~~~~~~~l~~~~~~~~~~~~~Dvs~~~~v~~~~~~i~~~~~~~~   81 (250)
T d1yo6a1           3 PGSVVVTGANRGIGLGLVQQL-VKDKNIRHIIATARDVEKATELKSIKDSRVHVLPLTVTCDKSLDTFVSKVGEIVGSDG   81 (250)
T ss_dssp             CSEEEESSCSSHHHHHHHHHH-HTCTTCCEEEEEESSGGGCHHHHTCCCTTEEEEECCTTCHHHHHHHHHHHHHHHGGGC
T ss_pred             CCEEEEeCCCCHHHHHHHHHH-HHCCCCCEEEEEeCCHHHHHHHHHhhCCceEEEEEecCCHHHHHHHHHHHHHHhCCCC
Confidence            479999999999999977665 33575  7999999999998888753 222 2  23333223   3333444444456


Q ss_pred             ccEEEECCCC
Q psy1959         233 ANVVFEAVGG  242 (296)
Q Consensus       233 ~d~vld~~g~  242 (296)
                      +|+++++.|.
T Consensus        82 idilinnAG~   91 (250)
T d1yo6a1          82 LSLLINNAGV   91 (250)
T ss_dssp             CCEEEECCCC
T ss_pred             eEEEEEcCcc
Confidence            9999999984

>d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Gluconate 5-dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=97.34  E-value=0.00068  Score=56.26  Aligned_cols=81  Identities=16%  Similarity=0.124  Sum_probs=54.6

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHH-----hcCCcEE---EEcCCchhHHHHHHHHhC-CC
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIR-----QKGAWAA---LTFTNEKSLVNKVLEVSG-GK  231 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~-----~~g~~~~---~~~~~~~~~~~~i~~~~~-~~  231 (296)
                      +|++++|+|+++++|++.++.+ ...|++|++.++++++.+.+.     +.|....   .+..+..+..+.+.+... -.
T Consensus         4 ~gK~~lITGas~GIG~aia~~l-a~~Ga~V~i~~r~~~~~~~~~~~l~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~g   82 (251)
T d1vl8a_           4 RGRVALVTGGSRGLGFGIAQGL-AEAGCSVVVASRNLEEASEAAQKLTEKYGVETMAFRCDVSNYEEVKKLLEAVKEKFG   82 (251)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHH-HHTTCEEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEeCCCCHHHHHHHHHH-HHCCCEEEEEECCHHHHHHHHHHHHHHhCCcEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence            5899999999999999988777 457999999999988765432     3354432   233342333333333221 12


Q ss_pred             cccEEEECCCC
Q psy1959         232 YANVVFEAVGG  242 (296)
Q Consensus       232 g~d~vld~~g~  242 (296)
                      .+|+++++.|.
T Consensus        83 ~iDiLVnnAG~   93 (251)
T d1vl8a_          83 KLDTVVNAAGI   93 (251)
T ss_dssp             CCCEEEECCCC
T ss_pred             CCCEEEECCCC
Confidence            69999999984

>d1dhra_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.34  E-value=5e-05  Score=62.77  Aligned_cols=75  Identities=20%  Similarity=0.271  Sum_probs=50.1

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCcEEEEc-CC-----chhHHHHHHHHhCCCccc
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTF-TN-----EKSLVNKVLEVSGGKYAN  234 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~~~~~~-~~-----~~~~~~~i~~~~~~~g~d  234 (296)
                      +|++|+|+|+++++|.+.++.+ ...|++|+.+++.+.+..      ....... ..     .......+.+..+...+|
T Consensus         1 egK~vlITGas~GIG~a~a~~l-~~~G~~V~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iD   73 (236)
T d1dhra_           1 EARRVLVYGGRGALGSRCVQAF-RARNWWVASIDVVENEEA------SASVIVKMTDSFTEQADQVTAEVGKLLGDQKVD   73 (236)
T ss_dssp             CCCEEEEETTTSHHHHHHHHHH-HTTTCEEEEEESSCCTTS------SEEEECCCCSCHHHHHHHHHHHHHHHHTTCCEE
T ss_pred             CCCEEEEECCCCHHHHHHHHHH-HHCCCEEEEEeCCccccc------cccceeecccCcHHHHHHHHHHHHHHhCCCCce
Confidence            5899999999999999999888 558999999987665432      1111111 11     122233344444555799


Q ss_pred             EEEECCCC
Q psy1959         235 VVFEAVGG  242 (296)
Q Consensus       235 ~vld~~g~  242 (296)
                      +++++.|.
T Consensus        74 ~lInnAG~   81 (236)
T d1dhra_          74 AILCVAGG   81 (236)
T ss_dssp             EEEECCCC
T ss_pred             EEEECCcc
Confidence            99999873

>d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Rhizome secoisolariciresinol dehydrogenase
species: Mayapple (Podophyllum peltatum) [TaxId: 35933]

Probab=97.33  E-value=0.00021  Score=60.02  Aligned_cols=81  Identities=20%  Similarity=0.302  Sum_probs=55.6

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHh-cC---CcEEE--EcCCchhHHHHHHHHhC-CCcc
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQ-KG---AWAAL--TFTNEKSLVNKVLEVSG-GKYA  233 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~-~g---~~~~~--~~~~~~~~~~~i~~~~~-~~g~  233 (296)
                      +|++++|+|+++++|++.++.+ ...|++|+++++++++.+.+.+ +.   ....+  +..+.++..+.+.+... -..+
T Consensus         5 ~gKvalITGas~GIG~aia~~l-a~~Ga~V~i~~r~~~~~~~~~~~l~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~i   83 (268)
T d2bgka1           5 QDKVAIITGGAGGIGETTAKLF-VRYGAKVVIADIADDHGQKVCNNIGSPDVISFVHCDVTKDEDVRNLVDTTIAKHGKL   83 (268)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHH-HHTTCEEEEEESCHHHHHHHHHHHCCTTTEEEEECCTTCHHHHHHHHHHHHHHHSCC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHH-HHCCCEEEEEECCHHHHHHHHHHhcCCCceEEEEccCCCHHHHHHHHHHHHHHcCCc
Confidence            6899999999999999988777 4579999999999988776643 32   22222  33342334333333321 1379


Q ss_pred             cEEEECCCC
Q psy1959         234 NVVFEAVGG  242 (296)
Q Consensus       234 d~vld~~g~  242 (296)
                      |+++++.|.
T Consensus        84 D~lVnnAG~   92 (268)
T d2bgka1          84 DIMFGNVGV   92 (268)
T ss_dssp             CEEEECCCC
T ss_pred             ceecccccc
Confidence            999999883

>d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Mannitol dehydrogenase
species: Mushroom (Agaricus bisporus) [TaxId: 5341]

Probab=97.30  E-value=0.00031  Score=58.63  Aligned_cols=81  Identities=16%  Similarity=0.194  Sum_probs=55.5

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHH-----HhcCCcEE---EEcCCchhHHHHHHHHhC-CC
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLI-----RQKGAWAA---LTFTNEKSLVNKVLEVSG-GK  231 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~-----~~~g~~~~---~~~~~~~~~~~~i~~~~~-~~  231 (296)
                      +|++++|+|+++++|.++++.+ ...|++|+++++++++.+.+     ++.|....   .+..+.++..+.+.+... -.
T Consensus         8 ~gK~alITGas~GIG~aia~~l-a~~Ga~V~i~~r~~~~~~~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~g   86 (260)
T d1h5qa_           8 VNKTIIVTGGNRGIGLAFTRAV-AAAGANVAVIYRSAADAVEVTEKVGKEFGVKTKAYQCDVSNTDIVTKTIQQIDADLG   86 (260)
T ss_dssp             TTEEEEEETTTSHHHHHHHHHH-HHTTEEEEEEESSCTTHHHHHHHHHHHHTCCEEEEECCTTCHHHHHHHHHHHHHHSC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHH-HHCCCEEEEEECCHHHHHHHHHHHHHHhCCceEEEEccCCCHHHHHHHHHHHHHHhC
Confidence            5899999999999999988777 45799999999988876544     23354332   233342344333433321 23


Q ss_pred             cccEEEECCCC
Q psy1959         232 YANVVFEAVGG  242 (296)
Q Consensus       232 g~d~vld~~g~  242 (296)
                      .+|+++++.|.
T Consensus        87 ~iDilVnnAg~   97 (260)
T d1h5qa_          87 PISGLIANAGV   97 (260)
T ss_dssp             SEEEEEECCCC
T ss_pred             CCcEecccccc
Confidence            79999999874

>d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 15-hydroxyprostaglandin dehydrogenase, PGDH
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.27  E-value=0.00071  Score=56.16  Aligned_cols=81  Identities=17%  Similarity=0.114  Sum_probs=55.3

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHh-c-----CCcEE---EEcCCchhHHHHHHHHhC-C
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQ-K-----GAWAA---LTFTNEKSLVNKVLEVSG-G  230 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~-~-----g~~~~---~~~~~~~~~~~~i~~~~~-~  230 (296)
                      .|++++|+|+++++|.++++.+ ...|++|+.+++++++.+.+.+ +     +....   .+..+..+..+.+.+... -
T Consensus         2 ~GKvalITGas~GIG~aia~~l-a~~Ga~V~i~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~   80 (254)
T d2gdza1           2 NGKVALVTGAAQGIGRAFAEAL-LLKGAKVALVDWNLEAGVQCKAALHEQFEPQKTLFIQCDVADQQQLRDTFRKVVDHF   80 (254)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHH-HHTTCEEEEEESCHHHHHHHHHHHTTTSCGGGEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHH-HHCCCEEEEEECCHHHHHHHHHHHHHhcCCCcEEEEEeecCCHHHHHHHHHHHHHHc
Confidence            5899999999999999988877 4579999999999888765532 2     22222   233342333333333321 1


Q ss_pred             CcccEEEECCCC
Q psy1959         231 KYANVVFEAVGG  242 (296)
Q Consensus       231 ~g~d~vld~~g~  242 (296)
                      .++|+++++.|.
T Consensus        81 G~iDilVnnAg~   92 (254)
T d2gdza1          81 GRLDILVNNAGV   92 (254)
T ss_dssp             SCCCEEEECCCC
T ss_pred             CCcCeecccccc
Confidence            279999999985

>d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.26  E-value=0.00068  Score=56.52  Aligned_cols=81  Identities=21%  Similarity=0.226  Sum_probs=55.4

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHH----hcCCcEE---EEcCCchhHHHHHHHHhC--CC
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIR----QKGAWAA---LTFTNEKSLVNKVLEVSG--GK  231 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~----~~g~~~~---~~~~~~~~~~~~i~~~~~--~~  231 (296)
                      +|++++|+|+++++|.++++.+ ...|++|+..++++++++.+.    +.+....   .+..+..+..+.+.+...  +.
T Consensus         7 kgK~alVTGas~GIG~aiA~~l-a~~Ga~V~~~~r~~~~l~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~~g   85 (259)
T d1xq1a_           7 KAKTVLVTGGTKGIGHAIVEEF-AGFGAVIHTCARNEYELNECLSKWQKKGFQVTGSVCDASLRPEREKLMQTVSSMFGG   85 (259)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHH-HHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHHTT
T ss_pred             CCCEEEEeCCCCHHHHHHHHHH-HHCCCEEEEEECCHHHHHHHHHHHHhcCCceEEEeccCCCHHHHHHHHHHHHHHhCC
Confidence            6899999999999999988777 457999999999988876553    2333322   233332333333333321  12


Q ss_pred             cccEEEECCCC
Q psy1959         232 YANVVFEAVGG  242 (296)
Q Consensus       232 g~d~vld~~g~  242 (296)
                      .+|+++++.|.
T Consensus        86 ~idilvnnAG~   96 (259)
T d1xq1a_          86 KLDILINNLGA   96 (259)
T ss_dssp             CCSEEEEECCC
T ss_pred             Ccccccccccc
Confidence            59999999985

>d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: R-specific alcohol dehydrogenase
species: Lactobacillus brevis [TaxId: 1580]

Probab=97.25  E-value=0.00076  Score=55.92  Aligned_cols=79  Identities=15%  Similarity=0.128  Sum_probs=54.6

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHh-cC--Cc-EEE--EcCCchhHH---HHHHHHhCCC
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQ-KG--AW-AAL--TFTNEKSLV---NKVLEVSGGK  231 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~-~g--~~-~~~--~~~~~~~~~---~~i~~~~~~~  231 (296)
                      +|++++|+|+++++|++.++.+ ...|++|++.++++++.+.+.+ +.  .. ..+  +..+..+..   +.+.+..  .
T Consensus         5 ~gK~alVTGas~GIG~aia~~l-a~~Ga~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~--G   81 (251)
T d1zk4a1           5 DGKVAIITGGTLGIGLAIATKF-VEEGAKVMITGRHSDVGEKAAKSVGTPDQIQFFQHDSSDEDGWTKLFDATEKAF--G   81 (251)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHH-HHTTCEEEEEESCHHHHHHHHHHHCCTTTEEEEECCTTCHHHHHHHHHHHHHHH--S
T ss_pred             CCCEEEEeCCCCHHHHHHHHHH-HHCCCEEEEEECCHHHHHHHHHHhCCCCcEEEEEccCCCHHHHHHHHHHHHHHh--C
Confidence            6899999999999999987776 4579999999999888776653 22  12 222  333322333   3333333  2


Q ss_pred             cccEEEECCCC
Q psy1959         232 YANVVFEAVGG  242 (296)
Q Consensus       232 g~d~vld~~g~  242 (296)
                      ++|+++++.|.
T Consensus        82 ~iDiLVnnAg~   92 (251)
T d1zk4a1          82 PVSTLVNNAGI   92 (251)
T ss_dssp             SCCEEEECCCC
T ss_pred             CceEEEecccc
Confidence            79999999884

>d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative dehydrogenase ARPG836 (MGC4172)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.25  E-value=0.00045  Score=57.59  Aligned_cols=81  Identities=19%  Similarity=0.281  Sum_probs=55.1

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHH----hcCC-cEE----EEcCCchhHHHHHHHHhC-C
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIR----QKGA-WAA----LTFTNEKSLVNKVLEVSG-G  230 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~----~~g~-~~~----~~~~~~~~~~~~i~~~~~-~  230 (296)
                      +|+++||+|+++++|.+.++.+ ...|++|+.+++++++++.+.    +.+. ..+    .+..+.++..+.+.+... -
T Consensus         9 k~Kv~lITGas~GIG~aiA~~l-a~~G~~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~v~~~~~~~   87 (257)
T d1xg5a_           9 RDRLALVTGASGGIGAAVARAL-VQQGLKVVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLSNEEDILSMFSAIRSQH   87 (257)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHH-HHTTCEEEEEESCHHHHHHHHHHHHHTTCSSEEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHH-HHCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEEccCCCHHHHHHHHHHHHHhc
Confidence            5899999999999999987777 447999999999988876653    3332 222    233442333333333321 1


Q ss_pred             CcccEEEECCCC
Q psy1959         231 KYANVVFEAVGG  242 (296)
Q Consensus       231 ~g~d~vld~~g~  242 (296)
                      .++|+++++.|.
T Consensus        88 g~iD~lVnnAg~   99 (257)
T d1xg5a_          88 SGVDICINNAGL   99 (257)
T ss_dssp             CCCSEEEECCCC
T ss_pred             CCCCEEEecccc
Confidence            369999999985

>d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Streptomyces coelicolor [TaxId: 1902]

Probab=97.24  E-value=0.0011  Score=55.06  Aligned_cols=80  Identities=20%  Similarity=0.186  Sum_probs=54.3

Q ss_pred             CcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHH----HhcCCcEE---EEcCCchhHHHHHHHHhC-CCcc
Q psy1959         162 KQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLI----RQKGAWAA---LTFTNEKSLVNKVLEVSG-GKYA  233 (296)
Q Consensus       162 g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~----~~~g~~~~---~~~~~~~~~~~~i~~~~~-~~g~  233 (296)
                      |+.+||+|+++++|++.++.+ ...|++|++.++++++++.+    ++.+....   .+..+..+..+.+.+... -..+
T Consensus         2 gKValITGas~GIG~aia~~l-a~~Ga~V~i~~r~~~~l~~~~~~l~~~g~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~i   80 (257)
T d2rhca1           2 SEVALVTGATSGIGLEIARRL-GKEGLRVFVCARGEEGLRTTLKELREAGVEADGRTCDVRSVPEIEALVAAVVERYGPV   80 (257)
T ss_dssp             CCEEEEESCSSHHHHHHHHHH-HHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHTCSC
T ss_pred             CCEEEEeCCCCHHHHHHHHHH-HHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEeecCCHHHHHHHHHHHHHHhCCC
Confidence            677899999999999987766 44799999999998876654    34454433   233342333333333321 2369


Q ss_pred             cEEEECCCC
Q psy1959         234 NVVFEAVGG  242 (296)
Q Consensus       234 d~vld~~g~  242 (296)
                      |+++++.|.
T Consensus        81 DilVnnAG~   89 (257)
T d2rhca1          81 DVLVNNAGR   89 (257)
T ss_dssp             SEEEECCCC
T ss_pred             CEEEecccc
Confidence            999999884

>d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Levodione reductase
species: Corynebacterium aquaticum [TaxId: 144185]

Probab=97.24  E-value=0.001  Score=55.39  Aligned_cols=80  Identities=21%  Similarity=0.178  Sum_probs=53.9

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHh----c--CCcEE---EEcCCchhHHHHHHHHhC-C
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQ----K--GAWAA---LTFTNEKSLVNKVLEVSG-G  230 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~----~--g~~~~---~~~~~~~~~~~~i~~~~~-~  230 (296)
                      +|++++|+|+++++|+++++.+ ...|++|++.++++++++.+.+    .  +....   .+..+..+..+.+.+... -
T Consensus         3 ~gK~alITGas~GIG~aia~~l-a~~Ga~V~i~~r~~~~l~~~~~~~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~~~~~   81 (258)
T d1iy8a_           3 TDRVVLITGGGSGLGRATAVRL-AAEGAKLSLVDVSSEGLEASKAAVLETAPDAEVLTTVADVSDEAQVEAYVTATTERF   81 (258)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHH-HHTTCEEEEEESCHHHHHHHHHHHHHHCTTCCEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHH-HHCCCEEEEEECCHHHHHHHHHHHHhhCCCCeEEEEeccCCCHHHHHHHHHHHHHHh
Confidence            5789999999999999987777 4579999999999888765432    2  22222   233442333333333321 1


Q ss_pred             CcccEEEECCC
Q psy1959         231 KYANVVFEAVG  241 (296)
Q Consensus       231 ~g~d~vld~~g  241 (296)
                      ..+|+++++.|
T Consensus        82 G~iDiLVnnAG   92 (258)
T d1iy8a_          82 GRIDGFFNNAG   92 (258)
T ss_dssp             SCCSEEEECCC
T ss_pred             CCCCEEEECCc
Confidence            26999999987

>d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=97.23  E-value=0.00045  Score=57.40  Aligned_cols=81  Identities=19%  Similarity=0.271  Sum_probs=56.1

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHH----hcCCcEE---EEcCCchhHHHHHHHHh-CCCc
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIR----QKGAWAA---LTFTNEKSLVNKVLEVS-GGKY  232 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~----~~g~~~~---~~~~~~~~~~~~i~~~~-~~~g  232 (296)
                      +++.++|+|+++++|+++++.+ ...|++|++.++++++.+.+.    +.|....   .+..+..+..+.+.+.. .-..
T Consensus         9 enKvalITGas~GIG~a~a~~l-a~~Ga~V~~~~r~~~~l~~~~~~l~~~g~~~~~~~~Dvt~~~~v~~~~~~~~~~~g~   87 (251)
T d2c07a1           9 ENKVALVTGAGRGIGREIAKML-AKSVSHVICISRTQKSCDSVVDEIKSFGYESSGYAGDVSKKEEISEVINKILTEHKN   87 (251)
T ss_dssp             SSCEEEEESTTSHHHHHHHHHH-TTTSSEEEEEESSHHHHHHHHHHHHTTTCCEEEEECCTTCHHHHHHHHHHHHHHCSC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHH-HHcCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHhcCC
Confidence            5789999999999999988877 557999999999988776543    3454332   23334233433443332 1237


Q ss_pred             ccEEEECCCC
Q psy1959         233 ANVVFEAVGG  242 (296)
Q Consensus       233 ~d~vld~~g~  242 (296)
                      +|+++++.|.
T Consensus        88 iDilvnnag~   97 (251)
T d2c07a1          88 VDILVNNAGI   97 (251)
T ss_dssp             CCEEEECCCC
T ss_pred             ceeeeecccc
Confidence            9999998884

>d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (s)-1-phenylethanol dehydrogenase
species: Azoarcus sp. ebn1 [TaxId: 76114]

Probab=97.22  E-value=0.0014  Score=54.13  Aligned_cols=81  Identities=12%  Similarity=0.094  Sum_probs=54.4

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchH--HHHHhcCCcEE---EEcCCchhHHHHHHHHhC-CCccc
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKT--DLIRQKGAWAA---LTFTNEKSLVNKVLEVSG-GKYAN  234 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~--~~~~~~g~~~~---~~~~~~~~~~~~i~~~~~-~~g~d  234 (296)
                      +|++++|+|+++++|.+.++.+ ...|++|++.++++++.  +.+++.|....   .+..+..+..+.+.+... -.++|
T Consensus         4 ~gKvalVTGas~GIG~aia~~l-a~~Ga~V~~~~~~~~~~~~~~~~~~g~~~~~~~~Dvs~~~~v~~~~~~~~~~~G~iD   82 (247)
T d2ew8a1           4 KDKLAVITGGANGIGRAIAERF-AVEGADIAIADLVPAPEAEAAIRNLGRRVLTVKCDVSQPGDVEAFGKQVISTFGRCD   82 (247)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHH-HHTTCEEEEEESSCCHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHSCCC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHH-HHCCCEEEEEECCchHHHHHHHHHcCCcEEEEEeeCCCHHHHHHHHHHHHHHcCCCC
Confidence            5899999999999999988777 45799999999876542  34456665433   233342333333333321 13699


Q ss_pred             EEEECCCC
Q psy1959         235 VVFEAVGG  242 (296)
Q Consensus       235 ~vld~~g~  242 (296)
                      +++++.|.
T Consensus        83 ilVnnAG~   90 (247)
T d2ew8a1          83 ILVNNAGI   90 (247)
T ss_dssp             EEEECCCC
T ss_pred             EEEECCCC
Confidence            99999985

>d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase
species: Bacillus megaterium [TaxId: 1404]

Probab=97.22  E-value=0.00092  Score=55.78  Aligned_cols=81  Identities=25%  Similarity=0.242  Sum_probs=53.0

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcc-hHH----HHHhcCCcEEE---EcCCchhHHHHHHHHhC-CC
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSED-KTD----LIRQKGAWAAL---TFTNEKSLVNKVLEVSG-GK  231 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~-~~~----~~~~~g~~~~~---~~~~~~~~~~~i~~~~~-~~  231 (296)
                      +|++++|+|+++++|.+.++.+ ...|++|++.+++.+ +.+    .+++.+.....   +..+..+..+.+.+... -.
T Consensus         6 ~gK~alITGas~GIG~aia~~l-a~~G~~Vv~~~r~~~~~~~~~~~~~~~~g~~~~~~~~Dvt~~~~v~~~~~~~~~~~G   84 (261)
T d1geea_           6 EGKVVVITGSSTGLGKSMAIRF-ATEKAKVVVNYRSKEDEANSVLEEIKKVGGEAIAVKGDVTVESDVINLVQSAIKEFG   84 (261)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHH-HHTTCEEEEEESSCHHHHHHHHHHHHHTTCEEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEeCCCcHHHHHHHHHH-HHCCCEEEEEeCCcHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHhC
Confidence            6899999999999999977666 347999999998754 333    33455654332   33332333333333221 13


Q ss_pred             cccEEEECCCC
Q psy1959         232 YANVVFEAVGG  242 (296)
Q Consensus       232 g~d~vld~~g~  242 (296)
                      ++|+++++.|.
T Consensus        85 ~iDiLVnnAG~   95 (261)
T d1geea_          85 KLDVMINNAGL   95 (261)
T ss_dssp             CCCEEEECCCC
T ss_pred             CCCEeecccee
Confidence            69999999885

>d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase (5l265)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.20  E-value=0.00023  Score=59.68  Aligned_cols=81  Identities=16%  Similarity=0.195  Sum_probs=54.1

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHh----cCCc---E-E--EEcCCchhHHHHHHHHhC-
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQ----KGAW---A-A--LTFTNEKSLVNKVLEVSG-  229 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~----~g~~---~-~--~~~~~~~~~~~~i~~~~~-  229 (296)
                      +|+.++|+|+++++|.+.++.+ ...|++|++.++++++++.+.+    .+..   . .  .+..+..+..+.+.+... 
T Consensus         4 ~gKvalVTGas~GIG~aia~~l-a~~Ga~V~~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~~~~   82 (264)
T d1spxa_           4 AEKVAIITGSSNGIGRATAVLF-AREGAKVTITGRHAERLEETRQQILAAGVSEQNVNSVVADVTTDAGQDEILSTTLGK   82 (264)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHH-HHTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCcCCHHHHHHHHHH-HHCCCEEEEEECCHHHHHHHHHHHHhcCCCcCceEEEEccCCCHHHHHHHHHHHHHH
Confidence            6899999999999999987766 4479999999999888765532    3321   1 1  233342333333333321 


Q ss_pred             CCcccEEEECCCC
Q psy1959         230 GKYANVVFEAVGG  242 (296)
Q Consensus       230 ~~g~d~vld~~g~  242 (296)
                      -.++|+++++.|.
T Consensus        83 ~g~iDilvnnAG~   95 (264)
T d1spxa_          83 FGKLDILVNNAGA   95 (264)
T ss_dssp             HSCCCEEEECCC-
T ss_pred             hCCCCEeeccccc
Confidence            1379999999874

>d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus, TTHB020 [TaxId: 274]

Probab=97.20  E-value=0.001  Score=54.83  Aligned_cols=81  Identities=23%  Similarity=0.139  Sum_probs=56.9

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHH-hcCCcEE---EEcCCchhHHHHHHHHhC-CCcccE
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIR-QKGAWAA---LTFTNEKSLVNKVLEVSG-GKYANV  235 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~-~~g~~~~---~~~~~~~~~~~~i~~~~~-~~g~d~  235 (296)
                      .|++++|+|+++++|.+.++-+ ...|++|+.+++++++.+.+. +++....   .+..+.++..+.+.+... -..+|+
T Consensus         4 ~gK~alItGas~GIG~aia~~l-~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dls~~~~i~~~~~~i~~~~g~iDi   82 (241)
T d2a4ka1           4 SGKTILVTGAASGIGRAALDLF-AREGASLVAVDREERLLAEAVAALEAEAIAVVADVSDPKAVEAVFAEALEEFGRLHG   82 (241)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHH-HHTTCEEEEEESCHHHHHHHHHTCCSSEEEEECCTTSHHHHHHHHHHHHHHHSCCCE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHH-HHCCCEEEEEECCHHHHHHHHHHcCCceEEEEecCCCHHHHHHHHHHHHHHhCCccE
Confidence            6899999999999999988777 457999999999999877665 4565433   233332333333333321 136999


Q ss_pred             EEECCCC
Q psy1959         236 VFEAVGG  242 (296)
Q Consensus       236 vld~~g~  242 (296)
                      ++++.|.
T Consensus        83 LinnAg~   89 (241)
T d2a4ka1          83 VAHFAGV   89 (241)
T ss_dssp             EEEGGGG
T ss_pred             ecccccc
Confidence            9998874

>d1o5ia_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=97.20  E-value=0.00077  Score=55.23  Aligned_cols=74  Identities=23%  Similarity=0.277  Sum_probs=51.4

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCcEEEEcCCchhHHHHHHHHhCCCcccEEEECC
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNKVLEVSGGKYANVVFEAV  240 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~g~d~vld~~  240 (296)
                      +|++++|+|+++++|.++++.+ ...|++|++.++++++.+   +.+.... ..+- .+..+.+.+..  ..+|+++++.
T Consensus         3 kgK~~lVTGas~GIG~aia~~l-~~~Ga~V~~~~r~~~~l~---~~~~~~~-~~Dv-~~~~~~~~~~~--g~iD~lVnnA   74 (234)
T d1o5ia_           3 RDKGVLVLAASRGIGRAVADVL-SQEGAEVTICARNEELLK---RSGHRYV-VCDL-RKDLDLLFEKV--KEVDILVLNA   74 (234)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHH-HHTTCEEEEEESCHHHHH---HTCSEEE-ECCT-TTCHHHHHHHS--CCCSEEEECC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHH-HHCCCEEEEEECCHHHHH---hcCCcEE-Ecch-HHHHHHHHHHh--CCCcEEEecc
Confidence            5799999999999999988777 457999999998876554   4443322 2211 12233444443  2699999998


Q ss_pred             CC
Q psy1959         241 GG  242 (296)
Q Consensus       241 g~  242 (296)
                      |.
T Consensus        75 G~   76 (234)
T d1o5ia_          75 GG   76 (234)
T ss_dssp             CC
T ss_pred             cc
Confidence            84

>d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein F25D1.5
species: Caenorhabditis elegans [TaxId: 6239]

Probab=97.19  E-value=0.00027  Score=59.59  Aligned_cols=81  Identities=16%  Similarity=0.186  Sum_probs=54.2

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHH----hcCCc---E-E--EEcCCchhHHHHHHHHhC-
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIR----QKGAW---A-A--LTFTNEKSLVNKVLEVSG-  229 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~----~~g~~---~-~--~~~~~~~~~~~~i~~~~~-  229 (296)
                      +|++++|+|+++++|++.++.+ ...|++|+++++++++++.+.    +.+..   . .  .+..+..+..+.+.+... 
T Consensus         3 ~gK~alITGas~GIG~aia~~l-a~~Ga~V~~~~r~~~~l~~~~~~i~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~   81 (274)
T d1xhla_           3 SGKSVIITGSSNGIGRSAAVIF-AKEGAQVTITGRNEDRLEETKQQILKAGVPAEKINAVVADVTEASGQDDIINTTLAK   81 (274)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHH-HHTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHH-HHCCCEEEEEECCHHHHHHHHHHHHHcCCCCcceEEEEeeCCCHHHHHHHHHHHHHH
Confidence            5899999999999999977777 457999999999988876553    23321   1 1  233342333333333321 


Q ss_pred             CCcccEEEECCCC
Q psy1959         230 GKYANVVFEAVGG  242 (296)
Q Consensus       230 ~~g~d~vld~~g~  242 (296)
                      -..+|+++++.|.
T Consensus        82 ~G~iDilVnnAG~   94 (274)
T d1xhla_          82 FGKIDILVNNAGA   94 (274)
T ss_dssp             HSCCCEEEECCCC
T ss_pred             cCCceEEEeeccc
Confidence            1269999999873

>d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein R05D8.7
species: Caenorhabditis elegans [TaxId: 6239]

Probab=97.18  E-value=0.0003  Score=59.15  Aligned_cols=81  Identities=19%  Similarity=0.192  Sum_probs=54.6

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHh----cCCc---E-E--EEcCCchhHHHHHHHHhC-
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQ----KGAW---A-A--LTFTNEKSLVNKVLEVSG-  229 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~----~g~~---~-~--~~~~~~~~~~~~i~~~~~-  229 (296)
                      +|++++|+|+++++|.+.++.+ ...|++|+++++++++++.+.+    .+..   . .  .+..+..+..+.+.+... 
T Consensus         4 ~gK~alVTGas~GIG~aia~~l-a~~Ga~V~l~~r~~~~l~~~~~~l~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~   82 (272)
T d1xkqa_           4 SNKTVIITGSSNGIGRTTAILF-AQEGANVTITGRSSERLEETRQIILKSGVSEKQVNSVVADVTTEDGQDQIINSTLKQ   82 (272)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHH-HHTTCEEEEEESCHHHHHHHHHHHHTTTCCGGGEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCcCcHHHHHHHHHH-HHCCCEEEEEECCHHHHHHHHHHHHhcCCCCCceEEEEccCCCHHHHHHHHHHHHHH
Confidence            5899999999999999987777 4579999999999988765543    3321   1 1  233342333333333321 


Q ss_pred             CCcccEEEECCCC
Q psy1959         230 GKYANVVFEAVGG  242 (296)
Q Consensus       230 ~~g~d~vld~~g~  242 (296)
                      -..+|+++++.|.
T Consensus        83 ~g~iDilvnnAG~   95 (272)
T d1xkqa_          83 FGKIDVLVNNAGA   95 (272)
T ss_dssp             HSCCCEEEECCCC
T ss_pred             hCCceEEEeCCcc
Confidence            1369999999874

>d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR)
species: Human (Homo sapiens), [TaxId: 9606]

Probab=97.17  E-value=0.00075  Score=57.07  Aligned_cols=81  Identities=19%  Similarity=0.256  Sum_probs=54.0

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHH-----hcCCcEE-E--EcCCchhHHHHHHHHh-CCC
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIR-----QKGAWAA-L--TFTNEKSLVNKVLEVS-GGK  231 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~-----~~g~~~~-~--~~~~~~~~~~~i~~~~-~~~  231 (296)
                      +|++++|+|+++++|.++++.+ ...|++|+++++++++.+.+.     +.+.... +  +..+..+....+.... ...
T Consensus        24 ~gK~alITGas~GIG~aiA~~l-a~~Ga~Vii~~r~~~~l~~~~~~l~~~~g~~~~~~~~D~~~~~~v~~~~~~~~~~~g  102 (294)
T d1w6ua_          24 QGKVAFITGGGTGLGKGMTTLL-SSLGAQCVIASRKMDVLKATAEQISSQTGNKVHAIQCDVRDPDMVQNTVSELIKVAG  102 (294)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHH-HHTTCEEEEEESCHHHHHHHHHHHHHHHSSCEEEEECCTTCHHHHHHHHHHHHHHTC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHH-HHcCCEEEEEECCHHHHHHHHHHHHHhcCCceEEEEecccChHHHHHHhhhhhhhcc
Confidence            5899999999999999988776 457999999999988765443     2244332 2  2333233322222221 234


Q ss_pred             cccEEEECCCC
Q psy1959         232 YANVVFEAVGG  242 (296)
Q Consensus       232 g~d~vld~~g~  242 (296)
                      ++|+++++.|.
T Consensus       103 ~iDilvnnAg~  113 (294)
T d1w6ua_         103 HPNIVINNAAG  113 (294)
T ss_dssp             SCSEEEECCCC
T ss_pred             ccchhhhhhhh
Confidence            79999999884

>d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Peroxisomal trans 2-enoyl CoA reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.17  E-value=0.0014  Score=55.62  Aligned_cols=81  Identities=20%  Similarity=0.167  Sum_probs=54.4

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHh-c--------CCcEE---EEcCCchhHHHHHHHHh
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQ-K--------GAWAA---LTFTNEKSLVNKVLEVS  228 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~-~--------g~~~~---~~~~~~~~~~~~i~~~~  228 (296)
                      +|++++|+|+++++|.++++.+ ...|++|+++++++++.+.+.+ +        +....   .+..+.++..+.+.+..
T Consensus        11 ~gKvalITGas~GIG~aia~~l-a~~Ga~Vvi~~r~~~~l~~~~~el~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~   89 (297)
T d1yxma1          11 QGQVAIVTGGATGIGKAIVKEL-LELGSNVVIASRKLERLKSAADELQANLPPTKQARVIPIQCNIRNEEEVNNLVKSTL   89 (297)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHH-HHTTCEEEEEESCHHHHHHHHHHHHHTSCTTCCCCEEEEECCTTCHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHH-HHCCCEEEEEECCHHHHHHHHHHHHhhhccccCceEEEEeccCCCHHHHHHHHHHHH
Confidence            7899999999999999988776 4479999999999887654432 1        22222   23333233333333332


Q ss_pred             C-CCcccEEEECCCC
Q psy1959         229 G-GKYANVVFEAVGG  242 (296)
Q Consensus       229 ~-~~g~d~vld~~g~  242 (296)
                      . -..+|+++++.|.
T Consensus        90 ~~~G~iDiLVnnAg~  104 (297)
T d1yxma1          90 DTFGKINFLVNNGGG  104 (297)
T ss_dssp             HHHSCCCEEEECCCC
T ss_pred             HHhCCeEEEEeeccc
Confidence            1 1269999999884

>d1sbya1 c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase {Fly (Drosophila lebanonensis) [TaxId: 7225]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Drosophila alcohol dehydrogenase
species: Fly (Drosophila lebanonensis) [TaxId: 7225]

Probab=97.16  E-value=0.0015  Score=54.22  Aligned_cols=81  Identities=14%  Similarity=0.142  Sum_probs=50.7

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHh----cCCcEE-E---EcC-CchhHHHHHHHHhC-C
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQ----KGAWAA-L---TFT-NEKSLVNKVLEVSG-G  230 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~----~g~~~~-~---~~~-~~~~~~~~i~~~~~-~  230 (296)
                      +|++++|+|+++++|++++... ...|++|+++.++.++.+.+.+    .+-..+ +   +.. +..+..+.+.+... .
T Consensus         4 ~gK~vlITGgs~GIG~~~A~~l-a~~G~~vii~~r~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~   82 (254)
T d1sbya1           4 TNKNVIFVAALGGIGLDTSREL-VKRNLKNFVILDRVENPTALAELKAINPKVNITFHTYDVTVPVAESKKLLKKIFDQL   82 (254)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHH-HHTCCSEEEEEESSCCHHHHHHHHHHCTTSEEEEEECCTTSCHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEecCCCHHHHHHHHHH-HHCCCEEEEEECCcccHHHHHHHHhhCCCCCEEEEEeecCCCHHHHHHHHHHHHHHc
Confidence            5899999999999999976666 3479998888777666554433    222222 1   222 21223222332211 1


Q ss_pred             CcccEEEECCCC
Q psy1959         231 KYANVVFEAVGG  242 (296)
Q Consensus       231 ~g~d~vld~~g~  242 (296)
                      ..+|+++++.|.
T Consensus        83 g~iDilvnnAG~   94 (254)
T d1sbya1          83 KTVDILINGAGI   94 (254)
T ss_dssp             SCCCEEEECCCC
T ss_pred             CCCCEEEeCCCC
Confidence            369999999996

>d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Biliverdin IX beta reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.14  E-value=0.00028  Score=56.54  Aligned_cols=75  Identities=13%  Similarity=0.071  Sum_probs=52.9

Q ss_pred             CcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCcEEEEcCCchhHHHHHHHHhCCCcccEEEECCC
Q psy1959         162 KQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNKVLEVSGGKYANVVFEAVG  241 (296)
Q Consensus       162 g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~g~d~vld~~g  241 (296)
                      .++|+|+|++|.+|..++..+ ...|.+|++++|+.++.+.....+... +..+- .+ .+.+.+...  +.|++|.++|
T Consensus         3 ~kkIlV~GatG~iG~~v~~~L-l~~g~~V~~~~R~~~~~~~~~~~~~~~-~~gD~-~d-~~~l~~al~--~~d~vi~~~g   76 (205)
T d1hdoa_           3 VKKIAIFGATGQTGLTTLAQA-VQAGYEVTVLVRDSSRLPSEGPRPAHV-VVGDV-LQ-AADVDKTVA--GQDAVIVLLG   76 (205)
T ss_dssp             CCEEEEESTTSHHHHHHHHHH-HHTTCEEEEEESCGGGSCSSSCCCSEE-EESCT-TS-HHHHHHHHT--TCSEEEECCC
T ss_pred             CCEEEEECCCCHHHHHHHHHH-HHCcCEEEEEEcChhhccccccccccc-ccccc-cc-hhhHHHHhc--CCCEEEEEec
Confidence            478999999999999988877 447999999999988876544444433 22221 22 234444443  6899999998


Q ss_pred             C
Q psy1959         242 G  242 (296)
Q Consensus       242 ~  242 (296)
                      .
T Consensus        77 ~   77 (205)
T d1hdoa_          77 T   77 (205)
T ss_dssp             C
T ss_pred             c
Confidence            5

>d1gz6a_ c.2.1.2 (A:) (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.10  E-value=0.00099  Score=56.84  Aligned_cols=81  Identities=27%  Similarity=0.230  Sum_probs=53.3

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcc---------hHHHH----HhcCCcEEEEcCCchhHHHHHHHH
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSED---------KTDLI----RQKGAWAALTFTNEKSLVNKVLEV  227 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~---------~~~~~----~~~g~~~~~~~~~~~~~~~~i~~~  227 (296)
                      +|++++|+|+++++|.+.++.+ ...|++|++.+++.+         +.+.+    ...+.....+..+..+..+.+.+.
T Consensus         6 ~gKvalITGas~GIG~aiA~~l-a~~Ga~Vvi~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~   84 (302)
T d1gz6a_           6 DGRVVLVTGAGGGLGRAYALAF-AERGALVVVNDLGGDFKGVGKGSSAADKVVEEIRRRGGKAVANYDSVEAGEKLVKTA   84 (302)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHH-HHTTCEEEEECCCBCTTSCBCCSHHHHHHHHHHHHTTCEEEEECCCGGGHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHH-HHcCCEEEEEeCCchhhhhhhhHHHHHHHHHHHhhcccccccccchHHHHHHHHHHH
Confidence            5899999999999999977777 457999999876432         22222    233444555555534444444433


Q ss_pred             hC-CCcccEEEECCCC
Q psy1959         228 SG-GKYANVVFEAVGG  242 (296)
Q Consensus       228 ~~-~~g~d~vld~~g~  242 (296)
                      .. -.++|+++++.|.
T Consensus        85 ~~~~G~iDiLVnNAGi  100 (302)
T d1gz6a_          85 LDTFGRIDVVVNNAGI  100 (302)
T ss_dssp             HHHTSCCCEEEECCCC
T ss_pred             HHHcCCCCEEEECCcc
Confidence            21 2369999999884

>d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,6,8-tetrahydroxynaphthalene reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=97.08  E-value=0.0014  Score=54.49  Aligned_cols=81  Identities=17%  Similarity=0.139  Sum_probs=52.0

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeC-CcchHH----HHHhcCCcEEE---EcCCchhHHHHHHHHhC-CC
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCN-SEDKTD----LIRQKGAWAAL---TFTNEKSLVNKVLEVSG-GK  231 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~-~~~~~~----~~~~~g~~~~~---~~~~~~~~~~~i~~~~~-~~  231 (296)
                      .|+++||+|+++++|.+.++.+ ...|++|++..+ ++++.+    .+++.|.....   +..+.++..+.+.+... ..
T Consensus         5 ~GK~alITGas~GIG~aia~~l-a~~G~~Vvi~~~~~~~~~~~~~~~~~~~g~~~~~~~~D~~~~~~v~~~~~~~~~~~g   83 (259)
T d1ja9a_           5 AGKVALTTGAGRGIGRGIAIEL-GRRGASVVVNYGSSSKAAEEVVAELKKLGAQGVAIQADISKPSEVVALFDKAVSHFG   83 (259)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHH-HHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEeCCCCHHHHHHHHHH-HHcCCEEEEEcCCChHHHHHHHHHHHHcCCCceEecCCCCCHHHHHHHHHHHHHHcC
Confidence            6899999999999999988777 457999988655 444333    34455655432   22332333333333211 12


Q ss_pred             cccEEEECCCC
Q psy1959         232 YANVVFEAVGG  242 (296)
Q Consensus       232 g~d~vld~~g~  242 (296)
                      ++|+++++.|.
T Consensus        84 ~idilinnag~   94 (259)
T d1ja9a_          84 GLDFVMSNSGM   94 (259)
T ss_dssp             CEEEEECCCCC
T ss_pred             CCcEEEecccc
Confidence            69999999985

>d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.06  E-value=0.001  Score=55.77  Aligned_cols=78  Identities=21%  Similarity=0.285  Sum_probs=52.2

Q ss_pred             CcEE-EEEcCCCcHHHHHHH-HHHHhCCCEEEEEeCCcchHHHH----HhcCCcEE---EEcCCchh---HHHHHHHHhC
Q psy1959         162 KQTV-LVTAAGGGLGLAAVD-MATKIYKAKVIGVCNSEDKTDLI----RQKGAWAA---LTFTNEKS---LVNKVLEVSG  229 (296)
Q Consensus       162 g~~v-lI~Ga~g~vG~aa~~-la~~~~g~~Vi~~~~~~~~~~~~----~~~g~~~~---~~~~~~~~---~~~~i~~~~~  229 (296)
                      |++| +|+|+++|+|+++++ |+ +..|++|+..++++++.+.+    ++.+....   .+..+..+   +.+.+.+.. 
T Consensus         2 g~rVAlVTGas~GIG~a~A~~la-~~~g~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dvs~~~sv~~~~~~~~~~~-   79 (275)
T d1wmaa1           2 GIHVALVTGGNKGIGLAIVRDLC-RLFSGDVVLTARDVTRGQAAVQQLQAEGLSPRFHQLDIDDLQSIRALRDFLRKEY-   79 (275)
T ss_dssp             CCCEEEESSCSSHHHHHHHHHHH-HHSSSEEEEEESSHHHHHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHHHHH-
T ss_pred             CCeEEEECCCCCHHHHHHHHHHH-HhCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEEecCCHHHHHHHHHHHHHhc-
Confidence            5666 899999999999775 56 55689999999999887654    33343322   23333222   333343333 


Q ss_pred             CCcccEEEECCCC
Q psy1959         230 GKYANVVFEAVGG  242 (296)
Q Consensus       230 ~~g~d~vld~~g~  242 (296)
                       ..+|+++++.|-
T Consensus        80 -g~iDiLVnNAGi   91 (275)
T d1wmaa1          80 -GGLDVLVNNAGI   91 (275)
T ss_dssp             -SSEEEEEECCCC
T ss_pred             -CCcEEEEEcCCc
Confidence             369999999984

>d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase)
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=97.06  E-value=0.0017  Score=54.24  Aligned_cols=81  Identities=23%  Similarity=0.196  Sum_probs=53.5

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcc-hHH----HHHhcCCcEEEE---cCCchhHHHHHHHHhC-CC
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSED-KTD----LIRQKGAWAALT---FTNEKSLVNKVLEVSG-GK  231 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~-~~~----~~~~~g~~~~~~---~~~~~~~~~~i~~~~~-~~  231 (296)
                      +|++++|+|+++++|.+.++.+ ...|++|++.+++.+ +.+    .+++.+......   ..+.++..+.+.+... ..
T Consensus        17 ~gK~~lITGas~GIG~aia~~l-a~~Ga~Vvi~~~~~~~~~~~~~~~~~~~g~~~~~~~~D~~~~~~v~~~~~~~~~~~g   95 (272)
T d1g0oa_          17 EGKVALVTGAGRGIGREMAMEL-GRRGCKVIVNYANSTESAEEVVAAIKKNGSDAACVKANVGVVEDIVRMFEEAVKIFG   95 (272)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHH-HHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEeCCCCHHHHHHHHHH-HHcCCEEEEEeCCchHHHHHHHHHHHhhCCceeeEeCCCCCHHHHHHHHHHHHHHhC
Confidence            5899999999999999988777 457999999887643 333    344556554432   2332334444333321 13


Q ss_pred             cccEEEECCCC
Q psy1959         232 YANVVFEAVGG  242 (296)
Q Consensus       232 g~d~vld~~g~  242 (296)
                      ++|+++++.|.
T Consensus        96 ~idilV~nag~  106 (272)
T d1g0oa_          96 KLDIVCSNSGV  106 (272)
T ss_dssp             CCCEEEECCCC
T ss_pred             CCCcccccccc
Confidence            68999998874

>d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 11-beta-hydroxysteroid dehydrogenase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.04  E-value=0.0016  Score=54.33  Aligned_cols=43  Identities=21%  Similarity=0.253  Sum_probs=37.5

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHH
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIR  204 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~  204 (296)
                      +|++++|+|+++|+|++.+..+ ...|++|+.+++++++++.+.
T Consensus        13 ~GK~alITGassGIG~aiA~~l-a~~G~~Vil~~r~~~~l~~~~   55 (269)
T d1xu9a_          13 QGKKVIVTGASKGIGREMAYHL-AKMGAHVVVTARSKETLQKVV   55 (269)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHH-HHTTCEEEEEESCHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHH-HHCCCEEEEEECCHHHHHHHH
Confidence            6899999999999999977777 447999999999999887664

>d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: D(-)-3-hydroxybutyrate dehydrogenase
species: Pseudomonas fragi [TaxId: 296]

Probab=97.01  E-value=0.0017  Score=53.98  Aligned_cols=81  Identities=14%  Similarity=0.183  Sum_probs=51.8

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCc-chHHHHH-----hcCCcEEE---EcCCchhHHHHHHHHhC-C
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSE-DKTDLIR-----QKGAWAAL---TFTNEKSLVNKVLEVSG-G  230 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~-~~~~~~~-----~~g~~~~~---~~~~~~~~~~~i~~~~~-~  230 (296)
                      +|++++|+|+++++|++.++.+ ...|++|++.++++ ++.+.+.     +.|.....   +..+.++..+.+.+... -
T Consensus         3 ~gK~alITGas~GIG~aiA~~l-a~~Ga~V~~~~r~~~~~~~~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~   81 (260)
T d1x1ta1           3 KGKVAVVTGSTSGIGLGIATAL-AAQGADIVLNGFGDAAEIEKVRAGLAAQHGVKVLYDGADLSKGEAVRGLVDNAVRQM   81 (260)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHH-HHTTCEEEEECCSCHHHHHHHHHHHHHHHTSCEEEECCCTTSHHHHHHHHHHHHHHH
T ss_pred             CcCEEEEeCCCCHHHHHHHHHH-HHCCCEEEEEeCCcHHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHh
Confidence            6889999999999999977666 44799999999864 4443332     23444332   33332333333333221 1


Q ss_pred             CcccEEEECCCC
Q psy1959         231 KYANVVFEAVGG  242 (296)
Q Consensus       231 ~g~d~vld~~g~  242 (296)
                      ..+|+++++.|.
T Consensus        82 G~iDiLVnnAG~   93 (260)
T d1x1ta1          82 GRIDILVNNAGI   93 (260)
T ss_dssp             SCCSEEEECCCC
T ss_pred             CCCcEEEeeccc
Confidence            269999999984

>d1snya_ c.2.1.2 (A:) Carbonyl reductase sniffer {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase sniffer
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=97.01  E-value=0.0012  Score=54.36  Aligned_cols=80  Identities=19%  Similarity=0.286  Sum_probs=52.9

Q ss_pred             cEEEEEcCCCcHHHHHHHHHHH--hCCCEEEEEeCCcchHHHHHhc---CCcE-E--EEcCCchhHHHHHH---HHhCCC
Q psy1959         163 QTVLVTAAGGGLGLAAVDMATK--IYKAKVIGVCNSEDKTDLIRQK---GAWA-A--LTFTNEKSLVNKVL---EVSGGK  231 (296)
Q Consensus       163 ~~vlI~Ga~g~vG~aa~~la~~--~~g~~Vi~~~~~~~~~~~~~~~---g~~~-~--~~~~~~~~~~~~i~---~~~~~~  231 (296)
                      ++|+|+|+++++|+++++.+.+  ..|++|++.++++++.+.++++   +... .  .+..+.++..+.+.   +.....
T Consensus         3 KtilITGas~GIG~a~a~~l~~~a~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~i~~~~~~~   82 (248)
T d1snya_           3 NSILITGCNRGLGLGLVKALLNLPQPPQHLFTTCRNREQAKELEDLAKNHSNIHILEIDLRNFDAYDKLVADIEGVTKDQ   82 (248)
T ss_dssp             SEEEESCCSSHHHHHHHHHHHTSSSCCSEEEEEESCTTSCHHHHHHHHHCTTEEEEECCTTCGGGHHHHHHHHHHHHGGG
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHhcCCcEEEEEEEeccHHHHHHHHhhhHHHhhcC
Confidence            5899999999999997754412  2588999999999987766542   2222 2  23334333333333   333445


Q ss_pred             cccEEEECCCC
Q psy1959         232 YANVVFEAVGG  242 (296)
Q Consensus       232 g~d~vld~~g~  242 (296)
                      .+|+++++.|.
T Consensus        83 ~iDiLvnNAg~   93 (248)
T d1snya_          83 GLNVLFNNAGI   93 (248)
T ss_dssp             CCSEEEECCCC
T ss_pred             CcceEEeeccc
Confidence            79999999873

>d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Thermus thermophilus [TaxId: 274]

Probab=97.00  E-value=0.0029  Score=52.18  Aligned_cols=79  Identities=18%  Similarity=0.091  Sum_probs=51.9

Q ss_pred             CCcEEEEEcCCC--cHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHh----cCCcEEE--EcCCchhHHHHH---HHHhC
Q psy1959         161 EKQTVLVTAAGG--GLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQ----KGAWAAL--TFTNEKSLVNKV---LEVSG  229 (296)
Q Consensus       161 ~g~~vlI~Ga~g--~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~----~g~~~~~--~~~~~~~~~~~i---~~~~~  229 (296)
                      +|++++|+|++|  ++|++.++.+ ...|++|++.+++++..+.+++    .+....+  +..+..+..+.+   .+.. 
T Consensus         7 ~gK~alITGas~~~GIG~aiA~~l-a~~Ga~V~i~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~-   84 (256)
T d1ulua_           7 SGKKALVMGVTNQRSLGFAIAAKL-KEAGAEVALSYQAERLRPEAEKLAEALGGALLFRADVTQDEELDALFAGVKEAF-   84 (256)
T ss_dssp             TTCEEEEESCCCSSSHHHHHHHHH-HHTTCEEEEEESSGGGHHHHHHHHHHTTCCEEEECCTTCHHHHHHHHHHHHHHH-
T ss_pred             CCCEEEEECCCCCchHHHHHHHHH-HHCCCEEEEEeCcHHHHHHHHHhhhccCcccccccccCCHHHHHHHHHHHHHhc-
Confidence            689999999977  8999877766 3479999999988776554432    3333333  233323333333   3333 


Q ss_pred             CCcccEEEECCCC
Q psy1959         230 GKYANVVFEAVGG  242 (296)
Q Consensus       230 ~~g~d~vld~~g~  242 (296)
                       .++|+++++.|.
T Consensus        85 -g~iDilVnnag~   96 (256)
T d1ulua_          85 -GGLDYLVHAIAF   96 (256)
T ss_dssp             -SSEEEEEECCCC
T ss_pred             -CCceEEEecccc
Confidence             269999999874

>d1zmta1 c.2.1.2 (A:2-253) Halohydrin dehalogenase HheC {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Halohydrin dehalogenase HheC
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=96.99  E-value=0.00075  Score=55.96  Aligned_cols=75  Identities=15%  Similarity=0.029  Sum_probs=52.5

Q ss_pred             EEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhc----CCcEEEEcCCchhHHHHHHHHhCCCcccEEEEC
Q psy1959         164 TVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQK----GAWAALTFTNEKSLVNKVLEVSGGKYANVVFEA  239 (296)
Q Consensus       164 ~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~----g~~~~~~~~~~~~~~~~i~~~~~~~g~d~vld~  239 (296)
                      +.+|+|+++++|++.+.-+ ...|++|++.++++++.+.++..    ....+.+..+...+.+.+.+..+  .+|+++++
T Consensus         2 TAlVTGas~GiG~aiA~~l-a~~Ga~V~i~~r~~~~~~~~~~~~~~~~~~dv~~~~~~~~~~~~~~~~~G--~iDiLVnN   78 (252)
T d1zmta1           2 TAIVTNVKHFGGMGSALRL-SEAGHTVACHDESFKQKDELEAFAETYPQLKPMSEQEPAELIEAVTSAYG--QVDVLVSN   78 (252)
T ss_dssp             EEEESSTTSTTHHHHHHHH-HHTTCEEEECCGGGGSHHHHHHHHHHCTTSEECCCCSHHHHHHHHHHHHS--CCCEEEEE
T ss_pred             EEEEECCCCHHHHHHHHHH-HHCCCEEEEEECCHHHHHHHHhhhCcEEEeccCCHHHHHHHHHHHHHHcC--CCCEEEEC
Confidence            6899999999999977666 34799999999988888777543    22233333333444455555443  69999987


Q ss_pred             CC
Q psy1959         240 VG  241 (296)
Q Consensus       240 ~g  241 (296)
                      .|
T Consensus        79 Ag   80 (252)
T d1zmta1          79 DI   80 (252)
T ss_dssp             CC
T ss_pred             Cc
Confidence            76

>d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: meso-2,3-butanediol dehydrogenase
species: Klebsiella pneumoniae [TaxId: 573]

Probab=96.97  E-value=0.0024  Score=52.82  Aligned_cols=79  Identities=19%  Similarity=0.170  Sum_probs=52.7

Q ss_pred             cEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHH----HhcCCcEE---EEcCCchhHHHHHHHHhC-CCccc
Q psy1959         163 QTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLI----RQKGAWAA---LTFTNEKSLVNKVLEVSG-GKYAN  234 (296)
Q Consensus       163 ~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~----~~~g~~~~---~~~~~~~~~~~~i~~~~~-~~g~d  234 (296)
                      +.++|+|+++++|++.++.+ ...|++|++.++++++.+.+    ++.|....   .+..+.++..+.+.+... -.++|
T Consensus         2 KValITGas~GIG~aia~~l-a~~Ga~V~~~~r~~~~l~~~~~~i~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iD   80 (255)
T d1gega_           2 KVALVTGAGQGIGKAIALRL-VKDGFAVAIADYNDATAKAVASEINQAGGHAVAVKVDVSDRDQVFAAVEQARKTLGGFD   80 (255)
T ss_dssp             CEEEEETTTSHHHHHHHHHH-HHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHTTCCC
T ss_pred             CEEEEcCCccHHHHHHHHHH-HHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHHHHhCCcc
Confidence            35699999999999977666 34799999999999887654    34454432   233342333333333321 23699


Q ss_pred             EEEECCCC
Q psy1959         235 VVFEAVGG  242 (296)
Q Consensus       235 ~vld~~g~  242 (296)
                      +++++.|.
T Consensus        81 ilVnnAG~   88 (255)
T d1gega_          81 VIVNNAGV   88 (255)
T ss_dssp             EEEECCCC
T ss_pred             EEEecccc
Confidence            99999884

>d1ooea_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=96.96  E-value=0.00013  Score=60.10  Aligned_cols=74  Identities=24%  Similarity=0.289  Sum_probs=47.7

Q ss_pred             CcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCcEEEEcCC------chhHHHHHHHHhCCCcccE
Q psy1959         162 KQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTN------EKSLVNKVLEVSGGKYANV  235 (296)
Q Consensus       162 g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~~~~~~~~------~~~~~~~i~~~~~~~g~d~  235 (296)
                      +.+|+|+|+++++|.+.++.+ ...|++|+.+++++++..      ........+      .....+.+........+|+
T Consensus         2 ~gkVlITGas~GIG~aia~~l-~~~G~~V~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~iD~   74 (235)
T d1ooea_           2 SGKVIVYGGKGALGSAILEFF-KKNGYTVLNIDLSANDQA------DSNILVDGNKNWTEQEQSILEQTASSLQGSQVDG   74 (235)
T ss_dssp             CEEEEEETTTSHHHHHHHHHH-HHTTEEEEEEESSCCTTS------SEEEECCTTSCHHHHHHHHHHHHHHHHTTCCEEE
T ss_pred             CCEEEEECCCCHHHHHHHHHH-HHCCCEEEEEECCchhcc------cccceeccccCchhHHHHHHHHHHHHhcCCCeeE
Confidence            457899999999999988888 457999999998776432      111111111      0112223333334457999


Q ss_pred             EEECCCC
Q psy1959         236 VFEAVGG  242 (296)
Q Consensus       236 vld~~g~  242 (296)
                      ++++.|.
T Consensus        75 linnAG~   81 (235)
T d1ooea_          75 VFCVAGG   81 (235)
T ss_dssp             EEECCCC
T ss_pred             EEECCcc
Confidence            9999883

>d1uzma1 c.2.1.2 (A:9-245) beta-keto acyl carrier protein reductase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.93  E-value=0.00011  Score=60.77  Aligned_cols=77  Identities=18%  Similarity=0.151  Sum_probs=52.2

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCcEEEEcCCchhHHHHHHHHhC-CCcccEEEEC
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNKVLEVSG-GKYANVVFEA  239 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~-~~g~d~vld~  239 (296)
                      +|++++|+|+++++|.++++.+ ...|++|+++++++++.+.+.    ....+..+..+..+.+.+... ...+|+++++
T Consensus         6 ~gK~~lITGas~GIG~aia~~l-a~~Ga~V~~~~r~~~~~~~~~----~~~~Dv~~~~~v~~~~~~~~~~~g~iDiLVnn   80 (237)
T d1uzma1           6 VSRSVLVTGGNRGIGLAIAQRL-AADGHKVAVTHRGSGAPKGLF----GVEVDVTDSDAVDRAFTAVEEHQGPVEVLVSN   80 (237)
T ss_dssp             CCCEEEETTTTSHHHHHHHHHH-HHTTCEEEEEESSSCCCTTSE----EEECCTTCHHHHHHHHHHHHHHHSSCSEEEEE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHH-HHCCCEEEEEECCcchhcCce----EEEEecCCHHHHHHHHHHHHHhcCCceEEEee
Confidence            6899999999999999988777 457999999999877654321    122333442333333333221 1269999999


Q ss_pred             CCC
Q psy1959         240 VGG  242 (296)
Q Consensus       240 ~g~  242 (296)
                      .|.
T Consensus        81 AG~   83 (237)
T d1uzma1          81 AGL   83 (237)
T ss_dssp             CSC
T ss_pred             ecc
Confidence            884

>d2fr1a1 c.2.1.2 (A:1657-1915) Erythromycin synthase, eryAI, 1st ketoreductase module {Saccharopolyspora erythraea [TaxId: 1836]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Erythromycin synthase, eryAI, 1st ketoreductase module
species: Saccharopolyspora erythraea [TaxId: 1836]

Probab=96.90  E-value=0.0022  Score=52.99  Aligned_cols=84  Identities=23%  Similarity=0.231  Sum_probs=53.1

Q ss_pred             CCCCCcEEEEEcCCCcHHHHHHHHHHHhCCC-EEEEEeCCcch-------HHHHHhcCCcEEE---EcCCchhHHHHHHH
Q psy1959         158 KLKEKQTVLVTAAGGGLGLAAVDMATKIYKA-KVIGVCNSEDK-------TDLIRQKGAWAAL---TFTNEKSLVNKVLE  226 (296)
Q Consensus       158 ~~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~-~Vi~~~~~~~~-------~~~~~~~g~~~~~---~~~~~~~~~~~i~~  226 (296)
                      .++|+.+++|+|+++++|++.+..+ ...|+ .|+.+.+++.+       .+.+++.|....+   +..+..+..+.+.+
T Consensus         5 ~~~p~gt~lVTGgs~GIG~a~a~~l-a~~Ga~~vvl~~R~~~~~~~~~~~~~~l~~~g~~v~~~~~Dv~d~~~~~~~~~~   83 (259)
T d2fr1a1           5 EWKPTGTVLVTGGTGGVGGQIARWL-ARRGAPHLLLVSRSGPDADGAGELVAELEALGARTTVAACDVTDRESVRELLGG   83 (259)
T ss_dssp             CCCCCSEEEEETTTSHHHHHHHHHH-HHHTCSEEEEEESSGGGSTTHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHT
T ss_pred             ccCCcCEEEEECCCcHHHHHHHHHH-HHCCCCEEEEEeCCccCHHHHHHHHHHHHhccccccccccccchHHHHHHhhcc
Confidence            4789999999999999999977766 33588 57777765322       2233445654332   33332333333333


Q ss_pred             HhCCCcccEEEECCCC
Q psy1959         227 VSGGKYANVVFEAVGG  242 (296)
Q Consensus       227 ~~~~~g~d~vld~~g~  242 (296)
                      +.....+|.++.+.|.
T Consensus        84 i~~~~~i~~vv~~ag~   99 (259)
T d2fr1a1          84 IGDDVPLSAVFHAAAT   99 (259)
T ss_dssp             SCTTSCEEEEEECCCC
T ss_pred             cccccccccccccccc
Confidence            3334468999998884

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=96.87  E-value=0.0013  Score=50.85  Aligned_cols=90  Identities=18%  Similarity=0.154  Sum_probs=63.2

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCc-EEEEcCCchhHHHHHHHHhCCCcccEEEEC
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAW-AALTFTNEKSLVNKVLEVSGGKYANVVFEA  239 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~i~~~~~~~g~d~vld~  239 (296)
                      +.-+|+|+|+ |..|+.+++.| +.+|+.|.+.|.+.++++++++.... ....+.+...+.+.+      ..+|++|.+
T Consensus        31 ~pa~V~ViGa-GvaG~~A~~~A-~~lGA~V~~~D~~~~~l~~l~~~~~~~~~~~~~~~~~l~~~~------~~aDivI~a  102 (168)
T d1pjca1          31 KPGKVVILGG-GVVGTEAAKMA-VGLGAQVQIFDINVERLSYLETLFGSRVELLYSNSAEIETAV------AEADLLIGA  102 (168)
T ss_dssp             CCCEEEEECC-SHHHHHHHHHH-HHTTCEEEEEESCHHHHHHHHHHHGGGSEEEECCHHHHHHHH------HTCSEEEEC
T ss_pred             CCcEEEEECC-ChHHHHHHHHH-hhCCCEEEEEeCcHHHHHHHHHhhcccceeehhhhhhHHHhh------ccCcEEEEe
Confidence            4578999998 99999999999 67899999999999999999876332 222233313333333      258999998


Q ss_pred             CC---Cc----cHHHHHHHhhccCceE
Q psy1959         240 VG---GE----DKTDLIRQKGAWAALT  259 (296)
Q Consensus       240 ~g---~~----~~~~~~~~lg~~~g~~  259 (296)
                      +-   ..    .-+..++.| +++..+
T Consensus       103 alipG~~aP~lIt~~mv~~M-k~GSVI  128 (168)
T d1pjca1         103 VLVPGRRAPILVPASLVEQM-RTGSVI  128 (168)
T ss_dssp             CCCTTSSCCCCBCHHHHTTS-CTTCEE
T ss_pred             eecCCcccCeeecHHHHhhc-CCCcEE
Confidence            74   21    245677777 555444

>d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase-like protein HI0607
species: Haemophilus influenzae [TaxId: 727]

Probab=96.85  E-value=0.0019  Score=49.94  Aligned_cols=71  Identities=17%  Similarity=0.201  Sum_probs=51.2

Q ss_pred             HHcCCCCCcEEEEEcCCCcHHHHHHHHHHHhCCC-EEEEEeCCcchHHHHHh-cCCcEEEEcCCchhHHHHHHHHhCCCc
Q psy1959         155 RHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKA-KVIGVCNSEDKTDLIRQ-KGAWAALTFTNEKSLVNKVLEVSGGKY  232 (296)
Q Consensus       155 ~~~~~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~-~Vi~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~~~g  232 (296)
                      +..+..++++|+|+|+ |+.+.+++..+ +..|+ ++.++.|+.++.+.+.+ ++. ..++...             ...
T Consensus        10 ~~~~~~~~~~vlIlGa-GGaarai~~aL-~~~g~~~I~I~nR~~~ka~~L~~~~~~-~~~~~~~-------------~~~   73 (167)
T d1npya1          10 EKYHLNKNAKVIVHGS-GGMAKAVVAAF-KNSGFEKLKIYARNVKTGQYLAALYGY-AYINSLE-------------NQQ   73 (167)
T ss_dssp             HHTTCCTTSCEEEECS-STTHHHHHHHH-HHTTCCCEEEECSCHHHHHHHHHHHTC-EEESCCT-------------TCC
T ss_pred             HHcCCCCCCeEEEECC-CHHHHHHHHHH-HHCCCCEEEEecccHHHHHHHHHhhhh-hhhhccc-------------ccc
Confidence            5566678899999997 99999988888 45787 89999999998887765 343 2222111             235


Q ss_pred             ccEEEECCC
Q psy1959         233 ANVVFEAVG  241 (296)
Q Consensus       233 ~d~vld~~g  241 (296)
                      +|++++|+.
T Consensus        74 ~DliINaTp   82 (167)
T d1npya1          74 ADILVNVTS   82 (167)
T ss_dssp             CSEEEECSS
T ss_pred             hhhheeccc
Confidence            788888754

>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=96.82  E-value=0.0035  Score=49.08  Aligned_cols=94  Identities=16%  Similarity=0.117  Sum_probs=65.2

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCcEEEEc-CC------------------chhHH
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTF-TN------------------EKSLV  221 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~~~~~~-~~------------------~~~~~  221 (296)
                      +.-+|+|+|+ |..|+.+++.| +.+|+.|.+.|.+.++++.+++++...+... ..                  .....
T Consensus        28 ~pa~VvViGa-GvaG~~Aa~~A-~~lGA~V~v~D~~~~~~~~l~~l~~~~i~~~~~~~~~~~~~~gyA~~~s~~~~~~~~  105 (183)
T d1l7da1          28 PPARVLVFGV-GVAGLQAIATA-KRLGAVVMATDVRAATKEQVESLGGKFITVDDEAMKTAETAGGYAKEMGEEFRKKQA  105 (183)
T ss_dssp             CCCEEEEECC-SHHHHHHHHHH-HHTTCEEEEECSCSTTHHHHHHTTCEECCC-----------------------CCHH
T ss_pred             CCcEEEEEcC-cHHHHHHHHHH-HHcCCEEEEEeccHHHHHHHHHhhcceEEEeccccccccccccchhhcCHHHHHHHH
Confidence            4568999998 99999999999 6789999999999999999999986443110 00                  01223


Q ss_pred             HHHHHHhCCCcccEEEECCC---Cc----cHHHHHHHhhccCceE
Q psy1959         222 NKVLEVSGGKYANVVFEAVG---GE----DKTDLIRQKGAWAALT  259 (296)
Q Consensus       222 ~~i~~~~~~~g~d~vld~~g---~~----~~~~~~~~lg~~~g~~  259 (296)
                      +.+.+..  ...|++|.++-   ..    .-+..++.| ++|..+
T Consensus       106 ~~l~~~l--~~aDlVI~talipG~~aP~lit~~mv~~M-k~GSVI  147 (183)
T d1l7da1         106 EAVLKEL--VKTDIAITTALIPGKPAPVLITEEMVTKM-KPGSVI  147 (183)
T ss_dssp             HHHHHHH--TTCSEEEECCCCTTSCCCCCSCHHHHTTS-CTTCEE
T ss_pred             HHHHHHH--HhhhhheeeeecCCcccceeehHHHHHhc-CCCcEE
Confidence            3344433  36899999774   21    245677777 555444

>d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Escherichia coli [TaxId: 562]

Probab=96.80  E-value=0.0033  Score=48.65  Aligned_cols=77  Identities=14%  Similarity=0.192  Sum_probs=52.5

Q ss_pred             HHHHHcCCCCCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhc----CCcEEEEcCCchhHHHHHHHH
Q psy1959         152 VFSRHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQK----GAWAALTFTNEKSLVNKVLEV  227 (296)
Q Consensus       152 ~l~~~~~~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~----g~~~~~~~~~~~~~~~~i~~~  227 (296)
                      +|.+..-..+|++|+|+|+ ||.+.+++..+ ...|++++++.|+.+|.+.+.+.    +....+...+           
T Consensus         8 ~l~~~~~~~~~k~vlIlGa-GGaarai~~al-~~~g~~i~I~nRt~~ka~~l~~~~~~~~~~~~~~~~~-----------   74 (170)
T d1nyta1           8 DLERLSFIRPGLRILLIGA-GGASRGVLLPL-LSLDCAVTITNRTVSRAEELAKLFAHTGSIQALSMDE-----------   74 (170)
T ss_dssp             HHHHHTCCCTTCEEEEECC-SHHHHHHHHHH-HHTTCEEEEECSSHHHHHHHHHHTGGGSSEEECCSGG-----------
T ss_pred             HHHHcCCCCCCCEEEEECC-cHHHHHHHHHh-cccceEEEeccchHHHHHHHHHHHhhccccccccccc-----------
Confidence            4544443457899999997 99999988877 45799999999999887766542    2212221111           


Q ss_pred             hCCCcccEEEECCC
Q psy1959         228 SGGKYANVVFEAVG  241 (296)
Q Consensus       228 ~~~~g~d~vld~~g  241 (296)
                      .....+|++++|+.
T Consensus        75 ~~~~~~dliIN~Tp   88 (170)
T d1nyta1          75 LEGHEFDLIINATS   88 (170)
T ss_dssp             GTTCCCSEEEECCS
T ss_pred             ccccccceeecccc
Confidence            11346899999875

>d2pd4a1 c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Helicobacter pylori [TaxId: 210]

Probab=96.79  E-value=0.0023  Score=53.24  Aligned_cols=81  Identities=10%  Similarity=0.006  Sum_probs=52.0

Q ss_pred             CCcEEEEEcCCC--cHHHHHHHHHHHhCCCEEEEEeCCcchHHHHH---hcCCc-EEE--EcCCchhHHHHHHHHhC-CC
Q psy1959         161 EKQTVLVTAAGG--GLGLAAVDMATKIYKAKVIGVCNSEDKTDLIR---QKGAW-AAL--TFTNEKSLVNKVLEVSG-GK  231 (296)
Q Consensus       161 ~g~~vlI~Ga~g--~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~---~~g~~-~~~--~~~~~~~~~~~i~~~~~-~~  231 (296)
                      +|+++||+|++|  ++|.++++.+ ...|++|+.++++++..+.++   +.+.. ..+  +.....+..+.+.+... -.
T Consensus         4 ~gK~alITGaag~~GIG~AiA~~l-a~~Ga~V~i~~r~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~g   82 (274)
T d2pd4a1           4 KGKKGLIVGVANNKSIAYGIAQSC-FNQGATLAFTYLNESLEKRVRPIAQELNSPYVYELDVSKEEHFKSLYNSVKKDLG   82 (274)
T ss_dssp             TTCEEEEECCCSTTSHHHHHHHHH-HTTTCEEEEEESSTTTHHHHHHHHHHTTCCCEEECCTTCHHHHHHHHHHHHHHTS
T ss_pred             CCCEEEEECCCCCcHHHHHHHHHH-HHCCCEEEEEeCCHHHHHHHHHHHhhCCceeEeeecccchhhHHHHHHHHHHHcC
Confidence            689999999876  8999988888 457999999999875444433   22322 222  23332333333333221 23


Q ss_pred             cccEEEECCCC
Q psy1959         232 YANVVFEAVGG  242 (296)
Q Consensus       232 g~d~vld~~g~  242 (296)
                      .+|+++.+.|.
T Consensus        83 ~id~lV~nag~   93 (274)
T d2pd4a1          83 SLDFIVHSVAF   93 (274)
T ss_dssp             CEEEEEECCCC
T ss_pred             CCCeEEeeccc
Confidence            69999998884

>d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Saccharopine reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=96.54  E-value=0.015  Score=44.26  Aligned_cols=78  Identities=10%  Similarity=0.024  Sum_probs=54.0

Q ss_pred             CcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCcEEEEcCCchhHHHHHHHHhCCCcccEEEECCC
Q psy1959         162 KQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNKVLEVSGGKYANVVFEAVG  241 (296)
Q Consensus       162 g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~g~d~vld~~g  241 (296)
                      +++|+|.|+ |.+|..+++.+ ...|.+|++++++.++.+.+.+........... ...........  ...|.++.+..
T Consensus         2 ~K~IliiGa-G~~G~~~a~~L-~~~g~~V~v~dr~~~~a~~l~~~~~~~~~~~~~-~~~~~~~~~~i--~~~~~~i~~~~   76 (182)
T d1e5qa1           2 TKSVLMLGS-GFVTRPTLDVL-TDSGIKVTVACRTLESAKKLSAGVQHSTPISLD-VNDDAALDAEV--AKHDLVISLIP   76 (182)
T ss_dssp             CCEEEEECC-STTHHHHHHHH-HTTTCEEEEEESCHHHHHHHHTTCTTEEEEECC-TTCHHHHHHHH--TTSSEEEECSC
T ss_pred             CCEEEEECC-CHHHHHHHHHH-HhCCCEEEEEECChHHHHHHHhccccccccccc-ccchhhhHhhh--hccceeEeecc
Confidence            689999997 99999988888 456999999999999999887754444433332 22222223322  25678888777


Q ss_pred             Ccc
Q psy1959         242 GED  244 (296)
Q Consensus       242 ~~~  244 (296)
                      ...
T Consensus        77 ~~~   79 (182)
T d1e5qa1          77 YTF   79 (182)
T ss_dssp             GGG
T ss_pred             chh
Confidence            643

>d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamyl tRNA-reductase middle domain
species: Archaeon Methanopyrus kandleri [TaxId: 2320]

Probab=96.49  E-value=0.0089  Score=45.67  Aligned_cols=77  Identities=25%  Similarity=0.322  Sum_probs=54.2

Q ss_pred             HHcCCCCCcEEEEEcCCCcHHHHHHHHHHHhCCC-EEEEEeCCcchHH-HHHhcCCcEEEEcCCchhHHHHHHHHhCCCc
Q psy1959         155 RHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKA-KVIGVCNSEDKTD-LIRQKGAWAALTFTNEKSLVNKVLEVSGGKY  232 (296)
Q Consensus       155 ~~~~~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~-~Vi~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~g  232 (296)
                      +..+--.+.+++|.|+ |.+|.++++.+. ..|+ +++++.|+.+|.. ++++++. ....+   .++.+.+      ..
T Consensus        17 ~~~~~l~~~~ilviGa-G~~g~~v~~~L~-~~g~~~i~v~nRt~~ka~~l~~~~~~-~~~~~---~~~~~~l------~~   84 (159)
T d1gpja2          17 RELGSLHDKTVLVVGA-GEMGKTVAKSLV-DRGVRAVLVANRTYERAVELARDLGG-EAVRF---DELVDHL------AR   84 (159)
T ss_dssp             HHHSCCTTCEEEEESC-CHHHHHHHHHHH-HHCCSEEEEECSSHHHHHHHHHHHTC-EECCG---GGHHHHH------HT
T ss_pred             HHhCCcccCeEEEECC-CHHHHHHHHHHH-hcCCcEEEEEcCcHHHHHHHHHhhhc-ccccc---hhHHHHh------cc
Confidence            4433347889999997 999999999884 4687 7999999887765 4556664 33333   2333332      26


Q ss_pred             ccEEEECCCCc
Q psy1959         233 ANVVFEAVGGE  243 (296)
Q Consensus       233 ~d~vld~~g~~  243 (296)
                      +|++|.|++..
T Consensus        85 ~Divi~atss~   95 (159)
T d1gpja2          85 SDVVVSATAAP   95 (159)
T ss_dssp             CSEEEECCSSS
T ss_pred             CCEEEEecCCC
Confidence            89999999973

>d2o23a1 c.2.1.2 (A:6-253) Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.44  E-value=0.0025  Score=52.26  Aligned_cols=49  Identities=16%  Similarity=0.146  Sum_probs=40.0

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHH-hcCCcE
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIR-QKGAWA  210 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~-~~g~~~  210 (296)
                      +|+.++|+|+++++|.+.++-+ ...|++|+.+++++++.+.+. +++...
T Consensus         4 kGKvalITGas~GIG~aia~~l-a~~G~~V~~~~r~~~~~~~~~~~l~~~~   53 (248)
T d2o23a1           4 KGLVAVITGGASGLGLATAERL-VGQGASAVLLDLPNSGGEAQAKKLGNNC   53 (248)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHH-HHTTCEEEEEECTTSSHHHHHHHHCTTE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHH-HHCCCEEEEEeCChHHHHHHHHHhCCCc
Confidence            6899999999999999977777 457999999999988876554 455443

>d1edoa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Oil seed rape (Brassica napus) [TaxId: 3708]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Oil seed rape (Brassica napus) [TaxId: 3708]

Probab=96.42  E-value=0.0039  Score=51.18  Aligned_cols=79  Identities=20%  Similarity=0.133  Sum_probs=49.7

Q ss_pred             cEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeC-CcchHHHH----HhcCCcEE---EEcCCchhHHHHHHHHhC-CCcc
Q psy1959         163 QTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCN-SEDKTDLI----RQKGAWAA---LTFTNEKSLVNKVLEVSG-GKYA  233 (296)
Q Consensus       163 ~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~-~~~~~~~~----~~~g~~~~---~~~~~~~~~~~~i~~~~~-~~g~  233 (296)
                      ..++|+|+++++|++.++.+ ...|++|++.+. ++++.+.+    ++.|....   .+..+.++..+.+.+... -..+
T Consensus         2 pV~lITGas~GIG~a~a~~l-a~~Ga~V~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~i   80 (244)
T d1edoa_           2 PVVVVTGASRGIGKAIALSL-GKAGCKVLVNYARSAKAAEEVSKQIEAYGGQAITFGGDVSKEADVEAMMKTAIDAWGTI   80 (244)
T ss_dssp             CEEEETTCSSHHHHHHHHHH-HHTTCEEEEEESSCHHHHHHHHHHHHHHTCEEEEEECCTTSHHHHHHHHHHHHHHSSCC
T ss_pred             CEEEEeCCCcHHHHHHHHHH-HHCCCEEEEEeCCCHHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHHHHHHcCCC
Confidence            36899999999999987777 457999988754 55555444    33454332   233332333333333321 2379


Q ss_pred             cEEEECCCC
Q psy1959         234 NVVFEAVGG  242 (296)
Q Consensus       234 d~vld~~g~  242 (296)
                      |+++++.|.
T Consensus        81 DiLVnnAg~   89 (244)
T d1edoa_          81 DVVVNNAGI   89 (244)
T ss_dssp             SEEEECCCC
T ss_pred             Ccccccccc
Confidence            999999884

>d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Escherichia coli [TaxId: 562]

Probab=96.37  E-value=0.0093  Score=48.85  Aligned_cols=81  Identities=11%  Similarity=0.095  Sum_probs=53.0

Q ss_pred             CCcEEEEEcCCC--cHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHh----cCCcEEEEc--CCchhHHHHHHHHh-CCC
Q psy1959         161 EKQTVLVTAAGG--GLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQ----KGAWAALTF--TNEKSLVNKVLEVS-GGK  231 (296)
Q Consensus       161 ~g~~vlI~Ga~g--~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~----~g~~~~~~~--~~~~~~~~~i~~~~-~~~  231 (296)
                      +|++++|+|+++  ++|.+++..+ ...|++|+..+++++..+.+.+    .+....+..  .+..+..+.+.+.. ...
T Consensus         4 ~gK~~lITGass~~GIG~aiA~~l-~~~G~~V~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (258)
T d1qsga_           4 SGKRILVTGVASKLSIAYGIAQAM-HREGAELAFTYQNDKLKGRVEEFAAQLGSDIVLQCDVAEDASIDTMFAELGKVWP   82 (258)
T ss_dssp             TTCEEEECCCCSTTSHHHHHHHHH-HHTTCEEEEEESSTTTHHHHHHHHHHTTCCCEEECCTTCHHHHHHHHHHHHTTCS
T ss_pred             CCCEEEEECCCCchhHHHHHHHHH-HHcCCEEEEEeCCHHHHHHHHHHHhhcCCcceeecccchHHHHHHHHHHhhhccc
Confidence            689999999988  7888877776 4479999999998776655443    344333322  22233333444433 234


Q ss_pred             cccEEEECCCC
Q psy1959         232 YANVVFEAVGG  242 (296)
Q Consensus       232 g~d~vld~~g~  242 (296)
                      .+|+.+++.+.
T Consensus        83 ~~d~~v~~a~~   93 (258)
T d1qsga_          83 KFDGFVHSIGF   93 (258)
T ss_dssp             SEEEEEECCCC
T ss_pred             ccceEEEeecc
Confidence            68999998764

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=96.04  E-value=0.029  Score=40.98  Aligned_cols=77  Identities=10%  Similarity=0.139  Sum_probs=55.4

Q ss_pred             EEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHh-cCCcEEEEcCCchhHHHHHHHHhCCCcccEEEECCCC
Q psy1959         164 TVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQ-KGAWAALTFTNEKSLVNKVLEVSGGKYANVVFEAVGG  242 (296)
Q Consensus       164 ~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~~~g~d~vld~~g~  242 (296)
                      +|+|.|+ |.+|+..++.+ ...|.+|++++.++++.+.+.+ ++. .++..+.  .-.+.+.+ .+-+.+|.++-+..+
T Consensus         2 ~IvI~G~-G~~G~~la~~L-~~~g~~v~vid~d~~~~~~~~~~~~~-~vi~Gd~--~~~~~l~~-~~i~~a~~vv~~t~~   75 (132)
T d1lssa_           2 YIIIAGI-GRVGYTLAKSL-SEKGHDIVLIDIDKDICKKASAEIDA-LVINGDC--TKIKTLED-AGIEDADMYIAVTGK   75 (132)
T ss_dssp             EEEEECC-SHHHHHHHHHH-HHTTCEEEEEESCHHHHHHHHHHCSS-EEEESCT--TSHHHHHH-TTTTTCSEEEECCSC
T ss_pred             EEEEECC-CHHHHHHHHHH-HHCCCCcceecCChhhhhhhhhhhhh-hhccCcc--cchhhhhh-cChhhhhhhcccCCc
Confidence            6899997 99999999888 5579999999999999988875 454 3443322  11223333 344578999999988


Q ss_pred             ccHH
Q psy1959         243 EDKT  246 (296)
Q Consensus       243 ~~~~  246 (296)
                      +..+
T Consensus        76 d~~N   79 (132)
T d1lssa_          76 EEVN   79 (132)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            5443

>d2bd0a1 c.2.1.2 (A:2-241) Bacterial sepiapterin reductase {Chlorobium tepidum [TaxId: 1097]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Bacterial sepiapterin reductase
species: Chlorobium tepidum [TaxId: 1097]

Probab=96.03  E-value=0.011  Score=48.30  Aligned_cols=79  Identities=14%  Similarity=0.156  Sum_probs=50.6

Q ss_pred             cEEEEEcCCCcHHHHHHHHHHHhCCCE-------EEEEeCCcchHHHHH----hcCCcEEE---EcCCchhHHHHHHHHh
Q psy1959         163 QTVLVTAAGGGLGLAAVDMATKIYKAK-------VIGVCNSEDKTDLIR----QKGAWAAL---TFTNEKSLVNKVLEVS  228 (296)
Q Consensus       163 ~~vlI~Ga~g~vG~aa~~la~~~~g~~-------Vi~~~~~~~~~~~~~----~~g~~~~~---~~~~~~~~~~~i~~~~  228 (296)
                      +.+||+|+++++|++.+..+ ...|++       |+..++++++++.+.    +.|.....   +..+.++..+.+.+..
T Consensus         2 ~VvlITGas~GIG~aia~~l-a~~G~~~~~~~~~v~~~~r~~~~l~~~~~~~~~~g~~~~~~~~Dvt~~~~v~~~~~~~~   80 (240)
T d2bd0a1           2 HILLITGAGKGIGRAIALEF-ARAARHHPDFEPVLVLSSRTAADLEKISLECRAEGALTDTITADISDMADVRRLTTHIV   80 (240)
T ss_dssp             EEEEEETTTSHHHHHHHHHH-HHHTTTCTTCCEEEEEEESCHHHHHHHHHHHHTTTCEEEEEECCTTSHHHHHHHHHHHH
T ss_pred             CEEEEccCCCHHHHHHHHHH-HHhCccccccCcEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHH
Confidence            35799999999999977665 335876       888999888776553    34543322   3334233333333332


Q ss_pred             C-CCcccEEEECCCC
Q psy1959         229 G-GKYANVVFEAVGG  242 (296)
Q Consensus       229 ~-~~g~d~vld~~g~  242 (296)
                      . -..+|+++++.|.
T Consensus        81 ~~~g~iDilvnnAg~   95 (240)
T d2bd0a1          81 ERYGHIDCLVNNAGV   95 (240)
T ss_dssp             HHTSCCSEEEECCCC
T ss_pred             HHcCCcceeeccccc
Confidence            1 2369999999884

>d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=96.02  E-value=0.0063  Score=49.00  Aligned_cols=110  Identities=15%  Similarity=0.160  Sum_probs=73.2

Q ss_pred             hccHHHHHHHHHHHHcCCCCCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHH----hcCCcEE-EEcCC
Q psy1959         142 LADSYSTAQIVFSRHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIR----QKGAWAA-LTFTN  216 (296)
Q Consensus       142 l~~~~~ta~~~l~~~~~~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~----~~g~~~~-~~~~~  216 (296)
                      +..+...|.- + +..++++|++||-.|  ++.|+.++-+| +..|.+|+.++.+++-.+.++    ++|.+.+ +...+
T Consensus        61 is~P~~~a~m-l-~~L~l~~g~~VLeIG--sGsGY~taila-~l~g~~V~~ie~~~~l~~~a~~~l~~~g~~nv~~~~gd  135 (215)
T d1jg1a_          61 VSAPHMVAIM-L-EIANLKPGMNILEVG--TGSGWNAALIS-EIVKTDVYTIERIPELVEFAKRNLERAGVKNVHVILGD  135 (215)
T ss_dssp             ECCHHHHHHH-H-HHHTCCTTCCEEEEC--CTTSHHHHHHH-HHHCSCEEEEESCHHHHHHHHHHHHHTTCCSEEEEESC
T ss_pred             hhhhhhHHHH-H-HhhccCccceEEEec--CCCChhHHHHH-HhhCceeEEEeccHHHHHHHHHHHHHcCCceeEEEECc
Confidence            3445555542 3 677899999999999  45688888888 556888999999877555554    4565433 22222


Q ss_pred             chhHHHHHHHHhCCCcccEEEECCCC-ccHHHHHHHhhccCceEEeec
Q psy1959         217 EKSLVNKVLEVSGGKYANVVFEAVGG-EDKTDLIRQKGAWAALTFTNE  263 (296)
Q Consensus       217 ~~~~~~~i~~~~~~~g~d~vld~~g~-~~~~~~~~~lg~~~g~~~~~~  263 (296)
                       .  .   ........+|.++-+.+- ......+++| +.+|+...+.
T Consensus       136 -~--~---~g~~~~~pfD~Iiv~~a~~~ip~~l~~qL-~~gGrLv~pv  176 (215)
T d1jg1a_         136 -G--S---KGFPPKAPYDVIIVTAGAPKIPEPLIEQL-KIGGKLIIPV  176 (215)
T ss_dssp             -G--G---GCCGGGCCEEEEEECSBBSSCCHHHHHTE-EEEEEEEEEE
T ss_pred             -c--c---cCCcccCcceeEEeecccccCCHHHHHhc-CCCCEEEEEE
Confidence             1  0   011113468999887666 4567788889 9999886654

>d1oaaa_ c.2.1.2 (A:) Sepiapterin reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sepiapterin reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.96  E-value=0.016  Score=47.57  Aligned_cols=81  Identities=12%  Similarity=0.143  Sum_probs=50.8

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHh--CCCEEEEEeCCcchHHHHHh----c--CCcEE---EEcCCchhHHHHHHHH--
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKI--YKAKVIGVCNSEDKTDLIRQ----K--GAWAA---LTFTNEKSLVNKVLEV--  227 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~--~g~~Vi~~~~~~~~~~~~~~----~--g~~~~---~~~~~~~~~~~~i~~~--  227 (296)
                      .|+.++|+|+++++|.++++.+.+.  .|++|+.+++++++++.+.+    .  +....   .+..+..+..+.+..+  
T Consensus         5 ~gKvalITGas~GIG~aiA~~lA~~~~~G~~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~Dvs~~~~v~~l~~~~~~   84 (259)
T d1oaaa_           5 GCAVCVLTGASRGFGRALAPQLARLLSPGSVMLVSARSESMLRQLKEELGAQQPDLKVVLAAADLGTEAGVQRLLSAVRE   84 (259)
T ss_dssp             BSEEEEESSCSSHHHHHHHHHHHTTBCTTCEEEEEESCHHHHHHHHHHHHHHCTTSEEEEEECCTTSHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHhcccCCCEEEEEECCHHHHHHHHHHHHhhcCCceEEEEEccCCCHHHHHHHHHHHHH
Confidence            5788999999999999876544242  58999999999998776543    2  22222   2333423333333222  


Q ss_pred             -h--CCCcccEEEECCC
Q psy1959         228 -S--GGKYANVVFEAVG  241 (296)
Q Consensus       228 -~--~~~g~d~vld~~g  241 (296)
                       .  .....|+++++.|
T Consensus        85 ~~~~~~~~~~~lvnnag  101 (259)
T d1oaaa_          85 LPRPEGLQRLLLINNAA  101 (259)
T ss_dssp             SCCCTTCCEEEEEECCC
T ss_pred             hhhhccCceEEEEeccc
Confidence             1  2235788888876

>d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Haemophilus influenzae [TaxId: 727]

Probab=95.96  E-value=0.019  Score=44.21  Aligned_cols=77  Identities=18%  Similarity=0.173  Sum_probs=52.3

Q ss_pred             HHHHcCCCCCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHh-c---CCcEEEEcCCchhHHHHHHHHh
Q psy1959         153 FSRHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQ-K---GAWAALTFTNEKSLVNKVLEVS  228 (296)
Q Consensus       153 l~~~~~~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~-~---g~~~~~~~~~~~~~~~~i~~~~  228 (296)
                      |.+.....++++|+|.|+ |+.+.+++..+ ...+.+|+++.|+.++.+.+.+ +   +.......+.           .
T Consensus         9 l~~~~~~~~~k~vlIlGa-GGaarai~~aL-~~~~~~i~I~nR~~~~a~~l~~~~~~~~~~~~~~~~~-----------~   75 (171)
T d1p77a1           9 LQRLNWLRPNQHVLILGA-GGATKGVLLPL-LQAQQNIVLANRTFSKTKELAERFQPYGNIQAVSMDS-----------I   75 (171)
T ss_dssp             HHHTTCCCTTCEEEEECC-SHHHHTTHHHH-HHTTCEEEEEESSHHHHHHHHHHHGGGSCEEEEEGGG-----------C
T ss_pred             HHHcCCCCCCCEEEEECC-cHHHHHHHHHH-cccCceeeeccchHHHHHHHHHHHhhccccchhhhcc-----------c
Confidence            433333457899999997 99999988877 4467899999999988776654 2   2212222211           1


Q ss_pred             CCCcccEEEECCCC
Q psy1959         229 GGKYANVVFEAVGG  242 (296)
Q Consensus       229 ~~~g~d~vld~~g~  242 (296)
                      .-..+|++++|+..
T Consensus        76 ~~~~~diiIN~tp~   89 (171)
T d1p77a1          76 PLQTYDLVINATSA   89 (171)
T ss_dssp             CCSCCSEEEECCCC
T ss_pred             cccccceeeecccc
Confidence            12468999998874

>d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein At5g02240 (T7H20 290)
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=95.86  E-value=0.01  Score=46.98  Aligned_cols=72  Identities=19%  Similarity=0.109  Sum_probs=46.1

Q ss_pred             cEEEEEcCCCcHHHHHHHHHHHhCCC--EEEEEeCCcchHHHHHhcCCcEE-EEcCCchhHHHHHHHHhCCCcccEEEEC
Q psy1959         163 QTVLVTAAGGGLGLAAVDMATKIYKA--KVIGVCNSEDKTDLIRQKGAWAA-LTFTNEKSLVNKVLEVSGGKYANVVFEA  239 (296)
Q Consensus       163 ~~vlI~Ga~g~vG~aa~~la~~~~g~--~Vi~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~i~~~~~~~g~d~vld~  239 (296)
                      .+|||+|++|.+|..+++.+ ...|.  .|+.+.+++++...+.. +.... .+..+    .+.+.+..  +++|.++.+
T Consensus         4 ~tVlVtGatG~iG~~l~~~L-l~~g~~v~v~~~~R~~~~~~~~~~-~~~~~~~d~~~----~~~~~~~~--~~~d~vi~~   75 (252)
T d2q46a1           4 PTVLVTGASGRTGQIVYKKL-KEGSDKFVAKGLVRSAQGKEKIGG-EADVFIGDITD----ADSINPAF--QGIDALVIL   75 (252)
T ss_dssp             CEEEEESTTSTTHHHHHHHH-HHTTTTCEEEEEESCHHHHHHTTC-CTTEEECCTTS----HHHHHHHH--TTCSEEEEC
T ss_pred             CEEEEECCccHHHHHHHHHH-HHCCCcEEEEEEcCCHHHHHhccC-CcEEEEeeecc----cccccccc--ccceeeEEE
Confidence            68999999999999998888 44564  67777777766554432 23222 22222    22333443  368999998


Q ss_pred             CCC
Q psy1959         240 VGG  242 (296)
Q Consensus       240 ~g~  242 (296)
                      .+.
T Consensus        76 a~~   78 (252)
T d2q46a1          76 TSA   78 (252)
T ss_dssp             CCC
T ss_pred             Eee
Confidence            764

>d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Thermotoga maritima [TaxId: 2336]

Probab=95.77  E-value=0.026  Score=45.07  Aligned_cols=108  Identities=18%  Similarity=0.126  Sum_probs=70.3

Q ss_pred             HHHHHHHHHHHHcCCCCCcEEEEEcCCCcHHHHHHHHHHHhC-CCEEEEEeCCcchHHHHHhc----CCcE-EEEcCCch
Q psy1959         145 SYSTAQIVFSRHAKLKEKQTVLVTAAGGGLGLAAVDMATKIY-KAKVIGVCNSEDKTDLIRQK----GAWA-ALTFTNEK  218 (296)
Q Consensus       145 ~~~ta~~~l~~~~~~~~g~~vlI~Ga~g~vG~aa~~la~~~~-g~~Vi~~~~~~~~~~~~~~~----g~~~-~~~~~~~~  218 (296)
                      +...|+ .+ +..++++|++||-.|+ |. |..++.+|+... ..+|+.++.+++..+.+++.    +... .+...+..
T Consensus        61 P~~~a~-~l-~~l~l~~g~~VLdiG~-Gt-G~~s~~la~~~~~~g~V~~id~~~~~~~~a~~~~~~~~~~n~~~~~~d~~  136 (213)
T d1dl5a1          61 PSLMAL-FM-EWVGLDKGMRVLEIGG-GT-GYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGY  136 (213)
T ss_dssp             HHHHHH-HH-HHTTCCTTCEEEEECC-TT-SHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGG
T ss_pred             chhhHH-HH-HhhhccccceEEEecC-cc-chhHHHHHHHhCCCCcEEEeecchhhHHHhhhhHhhhcccccccccCchH
Confidence            444444 23 6788999999999995 43 888888884332 45999999998877777652    3322 22222201


Q ss_pred             hHHHHHHHHhCCCcccEEEECCCCc-cHHHHHHHhhccCceEEeec
Q psy1959         219 SLVNKVLEVSGGKYANVVFEAVGGE-DKTDLIRQKGAWAALTFTNE  263 (296)
Q Consensus       219 ~~~~~i~~~~~~~g~d~vld~~g~~-~~~~~~~~lg~~~g~~~~~~  263 (296)
                      +      .......+|+++.+.+-+ ..+..++.| +++|++.++.
T Consensus       137 ~------~~~~~~~fD~I~~~~~~~~~p~~l~~~L-kpGG~lv~pv  175 (213)
T d1dl5a1         137 Y------GVPEFSPYDVIFVTVGVDEVPETWFTQL-KEGGRVIVPI  175 (213)
T ss_dssp             G------CCGGGCCEEEEEECSBBSCCCHHHHHHE-EEEEEEEEEB
T ss_pred             H------ccccccchhhhhhhccHHHhHHHHHHhc-CCCcEEEEEE
Confidence            0      011123699999877764 457788899 9999987643

>d2h7ma1 c.2.1.2 (A:2-269) Enoyl-ACP reductase {Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]

Probab=95.75  E-value=0.024  Score=46.37  Aligned_cols=82  Identities=22%  Similarity=0.223  Sum_probs=51.9

Q ss_pred             CCCcEEEEEcCC--CcHHHHHHHHHHHhCCCEEEEEeCCcchH-HHHHh-cCCcE---EEEcCCc---hhHHHHHHHHhC
Q psy1959         160 KEKQTVLVTAAG--GGLGLAAVDMATKIYKAKVIGVCNSEDKT-DLIRQ-KGAWA---ALTFTNE---KSLVNKVLEVSG  229 (296)
Q Consensus       160 ~~g~~vlI~Ga~--g~vG~aa~~la~~~~g~~Vi~~~~~~~~~-~~~~~-~g~~~---~~~~~~~---~~~~~~i~~~~~  229 (296)
                      =+|++++|+|++  .++|+++++-+ ...|++|+.+++++++. +.+.+ ++...   ..+..+.   .+..+.+.+..+
T Consensus         4 l~gK~~lItGaag~~GIG~aiA~~l-a~~Ga~Vil~~~~~~~~~~~~~~~~~~~~~~~~~dv~~~~~~~~~~~~v~~~~~   82 (268)
T d2h7ma1           4 LDGKRILVSGIITDSSIAFHIARVA-QEQGAQLVLTGFDRLRLIQRITDRLPAKAPLLELDVQNEEHLASLAGRVTEAIG   82 (268)
T ss_dssp             TTTCEEEECCCSSTTCHHHHHHHHH-HHTTCEEEEEECSCHHHHHHHHTTSSSCCCEEECCTTCHHHHHHHHHHHHHHHC
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHH-HHcCCEEEEEeCChHHHHHHHHHHcCCceeeEeeecccccccccccchhhhccc
Confidence            378999999964  47999877655 34799999999887765 33443 44322   2233332   233333443332


Q ss_pred             -CCcccEEEECCCC
Q psy1959         230 -GKYANVVFEAVGG  242 (296)
Q Consensus       230 -~~g~d~vld~~g~  242 (296)
                       ...+|+++++.|.
T Consensus        83 ~~~~ld~~i~~ag~   96 (268)
T d2h7ma1          83 AGNKLDGVVHSIGF   96 (268)
T ss_dssp             TTCCEEEEEECCCC
T ss_pred             cCCCcceeeecccc
Confidence             3468999999883

>d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=95.74  E-value=0.027  Score=45.38  Aligned_cols=106  Identities=14%  Similarity=0.022  Sum_probs=69.9

Q ss_pred             cHHHHHHHHHHHHcCCCCCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhc--C-CcEEEEcCC-chh
Q psy1959         144 DSYSTAQIVFSRHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQK--G-AWAALTFTN-EKS  219 (296)
Q Consensus       144 ~~~~ta~~~l~~~~~~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~--g-~~~~~~~~~-~~~  219 (296)
                      .+...|+ .+ +...+++|++||-.|+  |.|+.++.+| + ++.+|+.++.+++..+.+++.  . ....+...+ ...
T Consensus        55 ~p~~~a~-ml-~~L~l~~g~~VLdIG~--GsGy~ta~La-~-l~~~V~aiE~~~~~~~~A~~~~~~~~nv~~~~~d~~~g  128 (224)
T d1vbfa_          55 ALNLGIF-ML-DELDLHKGQKVLEIGT--GIGYYTALIA-E-IVDKVVSVEINEKMYNYASKLLSYYNNIKLILGDGTLG  128 (224)
T ss_dssp             CHHHHHH-HH-HHTTCCTTCEEEEECC--TTSHHHHHHH-H-HSSEEEEEESCHHHHHHHHHHHTTCSSEEEEESCGGGC
T ss_pred             hhhhHHH-HH-HHhhhcccceEEEecC--CCCHHHHHHH-H-HhcccccccccHHHHHHHHHHHhcccccccccCchhhc
Confidence            3444454 33 6778999999999995  4578888888 5 478999999999888877653  1 112222222 011


Q ss_pred             HHHHHHHHhCCCcccEEEECCCC-ccHHHHHHHhhccCceEEeec
Q psy1959         220 LVNKVLEVSGGKYANVVFEAVGG-EDKTDLIRQKGAWAALTFTNE  263 (296)
Q Consensus       220 ~~~~i~~~~~~~g~d~vld~~g~-~~~~~~~~~lg~~~g~~~~~~  263 (296)
                      +       .....+|.++-+.+- ......+++| +.||+..++.
T Consensus       129 ~-------~~~~pfD~Iiv~~a~~~ip~~l~~qL-k~GGrLV~pv  165 (224)
T d1vbfa_         129 Y-------EEEKPYDRVVVWATAPTLLCKPYEQL-KEGGIMILPI  165 (224)
T ss_dssp             C-------GGGCCEEEEEESSBBSSCCHHHHHTE-EEEEEEEEEE
T ss_pred             c-------hhhhhHHHHHhhcchhhhhHHHHHhc-CCCCEEEEEE
Confidence            1       112358988876665 4556678888 9999886653

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=95.74  E-value=0.018  Score=44.18  Aligned_cols=85  Identities=19%  Similarity=0.131  Sum_probs=56.2

Q ss_pred             cEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCcEEE------EcCCchhHHHHHHHHhCCCcccEE
Q psy1959         163 QTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAAL------TFTNEKSLVNKVLEVSGGKYANVV  236 (296)
Q Consensus       163 ~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~~~~------~~~~~~~~~~~i~~~~~~~g~d~v  236 (296)
                      +++.|.|+ |.+|++.+..+ ...|.+|.+.++++++.+.+++.+.....      .... ......+.+..  +.+|++
T Consensus         2 k~iaIiGa-G~~G~~~A~~l-~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~e~~--~~aD~i   76 (184)
T d1bg6a2           2 KTYAVLGL-GNGGHAFAAYL-ALKGQSVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHP-DLLTSDIGLAV--KDADVI   76 (184)
T ss_dssp             CEEEEECC-SHHHHHHHHHH-HHTTCEEEEECSCHHHHHHHHHHTSEEEESSSCCEEECC-SEEESCHHHHH--TTCSEE
T ss_pred             CEEEEECc-cHHHHHHHHHH-HHCCCEEEEEECCHHHHHHHHHcCCCchhhhhhhhhhhh-hhhhhhhHhHh--cCCCEE
Confidence            68999998 99999988888 45799999999999999988876532211      0000 00000112222  257888


Q ss_pred             EECCCCccHHHHHHHh
Q psy1959         237 FEAVGGEDKTDLIRQK  252 (296)
Q Consensus       237 ld~~g~~~~~~~~~~l  252 (296)
                      +-++........++.+
T Consensus        77 ii~v~~~~~~~~~~~i   92 (184)
T d1bg6a2          77 LIVVPAIHHASIAANI   92 (184)
T ss_dssp             EECSCGGGHHHHHHHH
T ss_pred             EEEEchhHHHHHHHHh
Confidence            8888776666666655

>d1yl7a1 c.2.1.3 (A:2-105,A:215-245) Dihydrodipicolinate reductase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.58  E-value=0.031  Score=41.28  Aligned_cols=78  Identities=15%  Similarity=0.149  Sum_probs=60.3

Q ss_pred             EEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCcEEEEcCCchhHHHHHHHHhCCCcccEEEECCCC
Q psy1959         164 TVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNKVLEVSGGKYANVVFEAVGG  242 (296)
Q Consensus       164 ~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~g~d~vld~~g~  242 (296)
                      +|.|.|++|-+|+..++...+..++++.......+....+...++|.+++.+.+....+.+.... ..+..+|+-+.|-
T Consensus         1 kI~v~Ga~GrMG~~i~~~i~~~~~~~l~~~~d~~~~~~~~~~~~~DvvIDFS~p~~~~~~~~~~~-~~~~~~ViGTTG~   78 (135)
T d1yl7a1           1 RVGVLGAKGKVGATMVRAVAAADDLTLSAELDAGDPLSLLTDGNTEVVIDFTHPDVVMGNLEFLI-DNGIHAVVGTTGF   78 (135)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHSTTSEEEEEECTTCCTHHHHTTTCSEEEECCCTTTHHHHHHHHH-HTTCEEEECCCCC
T ss_pred             CEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCchhhhccccCCEEEEcccHHHHHHHHHHHH-hcCCCEEEecccc
Confidence            58899999999999999886667888877776666677777778999999987445545554444 3488899999996

>d1mxha_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=95.56  E-value=0.038  Score=45.01  Aligned_cols=37  Identities=8%  Similarity=0.083  Sum_probs=30.6

Q ss_pred             cEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchH
Q psy1959         163 QTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKT  200 (296)
Q Consensus       163 ~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~  200 (296)
                      ...||+|+++++|.+.++.+ ...|++|+.++++.++.
T Consensus         2 ~vAlVTGas~GIG~aia~~l-a~~G~~Vvi~~r~~~~~   38 (266)
T d1mxha_           2 PAAVITGGARRIGHSIAVRL-HQQGFRVVVHYRHSEGA   38 (266)
T ss_dssp             CEEEETTCSSHHHHHHHHHH-HHTTCEEEEEESSCHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHH-HHCCCEEEEEECCchHH
Confidence            35799999999999987777 45799999999886643

>d1q0qa2 c.2.1.3 (A:1-125,A:275-300) 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: 1-deoxy-D-xylulose-5-phosphate reductoisomerase
species: Escherichia coli [TaxId: 562]

Probab=95.55  E-value=0.14  Score=38.34  Aligned_cols=96  Identities=9%  Similarity=0.126  Sum_probs=65.3

Q ss_pred             cEEEEEcCCCcHHHHHHHHHHHhC-CCEEEEEeCCcc--h-HHHHHhcCCcEEEEcCCchhH---H--------------
Q psy1959         163 QTVLVTAAGGGLGLAAVDMATKIY-KAKVIGVCNSED--K-TDLIRQKGAWAALTFTNEKSL---V--------------  221 (296)
Q Consensus       163 ~~vlI~Ga~g~vG~aa~~la~~~~-g~~Vi~~~~~~~--~-~~~~~~~g~~~~~~~~~~~~~---~--------------  221 (296)
                      ++|.|+|+||.+|..++.+.++.. .++|+.+.....  + .+.++++.+..++..++ ...   .              
T Consensus         2 K~I~IlGsTGSIG~~tL~Vi~~~~d~f~v~~Lsa~~N~~~L~~q~~~f~pk~v~i~d~-~~~~~l~~~l~~~~~~~~~~~   80 (151)
T d1q0qa2           2 KQLTILGSTGSIGCSTLDVVRHNPEHFRVVALVAGKNVTRMVEQCLEFSPRYAVMDDE-ASAKLLKTMLQQQGSRTEVLS   80 (151)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHCTTTEEEEEEEESSCHHHHHHHHHHHCCSEEEESSH-HHHHHHHHHHHHTTCCCEEEE
T ss_pred             CeEEEEcCCcHHHHHHHHHHHhCCCCcEEEEEEecCcHHHHHHHHHHHhhcccccccH-HHHHHHHHHhhhhcccccccc
Confidence            478999999999999999996543 458887775433  2 23445677776665543 111   1              


Q ss_pred             --HHHHHHhCCCcccEEEECCCC-ccHHHHHHHhhccCceEE
Q psy1959         222 --NKVLEVSGGKYANVVFEAVGG-EDKTDLIRQKGAWAALTF  260 (296)
Q Consensus       222 --~~i~~~~~~~g~d~vld~~g~-~~~~~~~~~lg~~~g~~~  260 (296)
                        +.+.++.....+|+++.+.-+ ..+...+..+ ..+-.+-
T Consensus        81 g~~~l~~~~~~~~~D~vi~AI~G~aGL~~t~~ai-k~gk~ia  121 (151)
T d1q0qa2          81 GQQAACDMAALEDVDQVMAAIVGAAGLLPTLAAI-RAGKTIL  121 (151)
T ss_dssp             SHHHHHHHHTCTTCCEEEECCSSGGGHHHHHHHH-HTTCEEE
T ss_pred             ChHHHHHHhcCCCCCEEEEecCcccHHHHHHHHH-hcCCeEE
Confidence              223333334578999998888 8999999999 6665553

>d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Putative shikimate dehydrogenase YdiB
species: Escherichia coli [TaxId: 562]

Probab=95.55  E-value=0.062  Score=41.47  Aligned_cols=73  Identities=11%  Similarity=0.096  Sum_probs=46.4

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCC-EEEEEeCCcchHHHHHh----c---CCc--EEEEcCCchhHHHHHHHHhCC
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKA-KVIGVCNSEDKTDLIRQ----K---GAW--AALTFTNEKSLVNKVLEVSGG  230 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~-~Vi~~~~~~~~~~~~~~----~---g~~--~~~~~~~~~~~~~~i~~~~~~  230 (296)
                      ++++|+|+|+ |+.+.+++..+.+ .|+ +++++.++.++.+.+..    +   ...  ...+..+...+    .+..  
T Consensus        17 ~~k~vlIlGa-GGaarai~~al~~-~g~~~i~i~nR~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~----~~~~--   88 (182)
T d1vi2a1          17 KGKTMVLLGA-GGASTAIGAQGAI-EGLKEIKLFNRRDEFFDKALAFAQRVNENTDCVVTVTDLADQQAF----AEAL--   88 (182)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHH-TTCSEEEEEECSSTTHHHHHHHHHHHHHHSSCEEEEEETTCHHHH----HHHH--
T ss_pred             CCCEEEEECC-cHHHHHHHHHHhh-cCCceEeeeccchHHHHHHHHHHHHHHhhcCcceEeeecccccch----hhhh--
Confidence            6789999997 9999988877744 677 88899988776654322    2   111  22333331222    2222  


Q ss_pred             CcccEEEECCC
Q psy1959         231 KYANVVFEAVG  241 (296)
Q Consensus       231 ~g~d~vld~~g  241 (296)
                      ..+|++++|..
T Consensus        89 ~~~diiIN~Tp   99 (182)
T d1vi2a1          89 ASADILTNGTK   99 (182)
T ss_dssp             HTCSEEEECSS
T ss_pred             cccceeccccC
Confidence            26799999875

>d1r0ka2 c.2.1.3 (A:3-126,A:265-290) 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Zymomonas mobilis [TaxId: 542]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: 1-deoxy-D-xylulose-5-phosphate reductoisomerase
species: Zymomonas mobilis [TaxId: 542]

Probab=95.54  E-value=0.14  Score=38.29  Aligned_cols=96  Identities=17%  Similarity=0.182  Sum_probs=65.3

Q ss_pred             cEEEEEcCCCcHHHHHHHHHHHhC-CCEEEEEeCCcc--h-HHHHHhcCCcEEEEcCCchhHH-----------------
Q psy1959         163 QTVLVTAAGGGLGLAAVDMATKIY-KAKVIGVCNSED--K-TDLIRQKGAWAALTFTNEKSLV-----------------  221 (296)
Q Consensus       163 ~~vlI~Ga~g~vG~aa~~la~~~~-g~~Vi~~~~~~~--~-~~~~~~~g~~~~~~~~~~~~~~-----------------  221 (296)
                      ++|.|+|+||.+|..++++.++.. .++|+.+.....  + .+.++++.+..+...++ ....                 
T Consensus         3 K~I~IlGsTGSIG~~tL~Vi~~~~d~f~v~~lsa~~N~~~L~~q~~ef~Pk~v~i~d~-~~~~~l~~~~~~~~~~v~~g~   81 (150)
T d1r0ka2           3 RTVTVLGATGSIGHSTLDLIERNLDRYQVIALTANRNVKDLADAAKRTNAKRAVIADP-SLYNDLKEALAGSSVEAAAGA   81 (150)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHTGGGEEEEEEEESSCHHHHHHHHHHTTCSEEEESCG-GGHHHHHHHTTTCSSEEEESH
T ss_pred             cEEEEECCCcHHHHHHHHHHHcCCCCcEEEEEEeCCCHHHHHHHHHhhccccceeccH-HHHHHHHHHhhhcccccccCc
Confidence            789999999999999999996543 468888876543  2 34456677776654432 1111                 


Q ss_pred             HHHHHHhCCCcccEEEECCCC-ccHHHHHHHhhccCceEEe
Q psy1959         222 NKVLEVSGGKYANVVFEAVGG-EDKTDLIRQKGAWAALTFT  261 (296)
Q Consensus       222 ~~i~~~~~~~g~d~vld~~g~-~~~~~~~~~lg~~~g~~~~  261 (296)
                      +.+.+.. ...+|+++.++-+ ..+...+.++ ..+-.+-+
T Consensus        82 ~~l~~~~-~~~~D~vv~Ai~G~~GL~~tl~ai-~~gk~iaL  120 (150)
T d1r0ka2          82 DALVEAA-MMGADWTMAAIIGCAGLKATLAAI-RKGKTVAL  120 (150)
T ss_dssp             HHHHHHH-TSCCSEEEECCCSGGGHHHHHHHH-HTTSEEEE
T ss_pred             cchheec-ccccceeeeecCchhHHHHHHHHH-hcCCEEEE
Confidence            1122222 2368999999766 8999999999 76665543

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=95.33  E-value=0.023  Score=39.00  Aligned_cols=71  Identities=14%  Similarity=0.072  Sum_probs=47.1

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcc--hHHHHHhcCCcEEEEcCCchhHHHHHHHHhCCCcccEEEE
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSED--KTDLIRQKGAWAALTFTNEKSLVNKVLEVSGGKYANVVFE  238 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~--~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~g~d~vld  238 (296)
                      +|++|+|+|. |..|+++++++ ...|++|++.|....  ..+.+++ +....+.... ...   +      ..+|.++-
T Consensus         4 ~~K~v~ViGl-G~sG~s~a~~L-~~~g~~v~~~D~~~~~~~~~~~~~-~~~~~~~~~~-~~~---~------~~~d~vi~   70 (93)
T d2jfga1           4 QGKNVVIIGL-GLTGLSCVDFF-LARGVTPRVMDTRMTPPGLDKLPE-AVERHTGSLN-DEW---L------MAADLIVA   70 (93)
T ss_dssp             TTCCEEEECC-SHHHHHHHHHH-HHTTCCCEEEESSSSCTTGGGSCT-TSCEEESBCC-HHH---H------HHCSEEEE
T ss_pred             CCCEEEEEeE-CHHHHHHHHHH-HHCCCEEEEeeCCcCchhHHHHhh-ccceeecccc-hhh---h------ccCCEEEE
Confidence            5788999998 99999999999 568999999997544  2333322 2323333322 111   1      25789998


Q ss_pred             CCCCcc
Q psy1959         239 AVGGED  244 (296)
Q Consensus       239 ~~g~~~  244 (296)
                      +-|-+.
T Consensus        71 SPGi~~   76 (93)
T d2jfga1          71 SPGIAL   76 (93)
T ss_dssp             CTTSCT
T ss_pred             CCCCCC
Confidence            888643

>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Siroheme synthase CysG, domain 1
species: Salmonella typhimurium [TaxId: 90371]

Probab=95.13  E-value=0.061  Score=38.06  Aligned_cols=87  Identities=8%  Similarity=0.040  Sum_probs=53.7

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcch-HHHHHhcCCcEEEEcC-CchhHHHHHHHHhCCCcccEEEE
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDK-TDLIRQKGAWAALTFT-NEKSLVNKVLEVSGGKYANVVFE  238 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~-~~~~~~~g~~~~~~~~-~~~~~~~~i~~~~~~~g~d~vld  238 (296)
                      .|++|+|.|+ |.+|..-++.+ ...|++|++++..... ...+.+.+........ ...++          .++++++-
T Consensus        11 ~~k~vlVvG~-G~va~~ka~~l-l~~ga~v~v~~~~~~~~~~~~~~~~~i~~~~~~~~~~dl----------~~~~lv~~   78 (113)
T d1pjqa1          11 RDRDCLIVGG-GDVAERKARLL-LEAGARLTVNALTFIPQFTVWANEGMLTLVEGPFDETLL----------DSCWLAIA   78 (113)
T ss_dssp             BTCEEEEECC-SHHHHHHHHHH-HHTTBEEEEEESSCCHHHHHHHTTTSCEEEESSCCGGGG----------TTCSEEEE
T ss_pred             CCCEEEEECC-CHHHHHHHHHH-HHCCCeEEEEeccCChHHHHHHhcCCceeeccCCCHHHh----------CCCcEEee
Confidence            5789999997 99999988888 4579999988764432 2222222322222211 11111          37899999


Q ss_pred             CCCCccHHHHHHHhhccCceE
Q psy1959         239 AVGGEDKTDLIRQKGAWAALT  259 (296)
Q Consensus       239 ~~g~~~~~~~~~~lg~~~g~~  259 (296)
                      +.+...++..+....+..|..
T Consensus        79 at~d~~~n~~i~~~a~~~~il   99 (113)
T d1pjqa1          79 ATDDDTVNQRVSDAAESRRIF   99 (113)
T ss_dssp             CCSCHHHHHHHHHHHHHTTCE
T ss_pred             cCCCHHHHHHHHHHHHHcCCE
Confidence            999876655444332444443

>d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Aldehyde reductase II
species: Sporobolomyces salmonicolor [TaxId: 5005]

Probab=95.02  E-value=0.019  Score=48.86  Aligned_cols=46  Identities=30%  Similarity=0.229  Sum_probs=38.1

Q ss_pred             CCCCCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHH
Q psy1959         158 KLKEKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIR  204 (296)
Q Consensus       158 ~~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~  204 (296)
                      -+.+|++|||+|++|-+|...+..+ ...|.+|++++++.++...++
T Consensus         7 ~~~~gk~VlVTG~sGfIGs~l~~~L-l~~G~~V~~~vR~~~~~~~~~   52 (342)
T d1y1pa1           7 VLPEGSLVLVTGANGFVASHVVEQL-LEHGYKVRGTARSASKLANLQ   52 (342)
T ss_dssp             SSCTTCEEEEETTTSHHHHHHHHHH-HHTTCEEEEEESSHHHHHHHH
T ss_pred             CCCCcCEEEEECCCCHHHHHHHHHH-HHCcCEEEEEeCCchhHHHHH
Confidence            4578999999999999999988777 446999999999877766554

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=94.88  E-value=0.062  Score=40.55  Aligned_cols=43  Identities=14%  Similarity=0.161  Sum_probs=36.5

Q ss_pred             EEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCC
Q psy1959         164 TVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGA  208 (296)
Q Consensus       164 ~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~  208 (296)
                      +|.|.|. |.+|...+..+ +..|.+|++.++++++.+.+++.+.
T Consensus         2 kI~iIG~-G~mG~~lA~~l-~~~g~~V~~~d~~~~~~~~a~~~~~   44 (165)
T d2f1ka2           2 KIGVVGL-GLIGASLAGDL-RRRGHYLIGVSRQQSTCEKAVERQL   44 (165)
T ss_dssp             EEEEECC-SHHHHHHHHHH-HHTTCEEEEECSCHHHHHHHHHTTS
T ss_pred             EEEEEee-cHHHHHHHHHH-HHCCCEEEEEECCchHHHHHHHhhc
Confidence            5889997 99998877777 4579999999999999998888774

>d1fjha_ c.2.1.2 (A:) 3-alpha-hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha-hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=94.86  E-value=0.06  Score=43.53  Aligned_cols=69  Identities=10%  Similarity=0.199  Sum_probs=44.0

Q ss_pred             cEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCcEEEEcCCchhHHHHHHHHh--CCCcccEEEECC
Q psy1959         163 QTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNKVLEVS--GGKYANVVFEAV  240 (296)
Q Consensus       163 ~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~--~~~g~d~vld~~  240 (296)
                      +.|+|+|+++++|+++++.+ ...|++|+.+++++++.          .-+..+.........+..  ....+|.++++.
T Consensus         2 kVvlITGas~GIG~aiA~~l-a~~Ga~V~~~~~~~~~~----------~~d~~~~~~~~~~~~~~~~~~~~~id~lv~~A   70 (257)
T d1fjha_           2 SIIVISGCATGIGAATRKVL-EAAGHQIVGIDIRDAEV----------IADLSTAEGRKQAIADVLAKCSKGMDGLVLCA   70 (257)
T ss_dssp             CEEEEETTTSHHHHHHHHHH-HHTTCEEEEEESSSSSE----------ECCTTSHHHHHHHHHHHHTTCTTCCSEEEECC
T ss_pred             CEEEEeCCCCHHHHHHHHHH-HHCCCEEEEEECChHHH----------HHHhcCHHHHHHHHHHHHHHhCCCCcEEEEcC
Confidence            46899999999999988877 45799999999865432          111112112222222222  234689999988


Q ss_pred             CC
Q psy1959         241 GG  242 (296)
Q Consensus       241 g~  242 (296)
                      |-
T Consensus        71 g~   72 (257)
T d1fjha_          71 GL   72 (257)
T ss_dssp             CC
T ss_pred             CC
Confidence            73

>d1d7oa_ c.2.1.2 (A:) Enoyl-ACP reductase {Oil seed rape (Brassica napus) [TaxId: 3708]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Oil seed rape (Brassica napus) [TaxId: 3708]

Probab=94.84  E-value=0.02  Score=47.72  Aligned_cols=37  Identities=11%  Similarity=0.112  Sum_probs=30.8

Q ss_pred             CCcEEEEEcCCC--cHHHHHHHHHHHhCCCEEEEEeCCcc
Q psy1959         161 EKQTVLVTAAGG--GLGLAAVDMATKIYKAKVIGVCNSED  198 (296)
Q Consensus       161 ~g~~vlI~Ga~g--~vG~aa~~la~~~~g~~Vi~~~~~~~  198 (296)
                      +|+++||+|++|  ++|++.++.+ ...|++|++..+++.
T Consensus         7 ~gK~alVTGass~~GIG~aiA~~l-a~~Ga~Vvi~~~~~~   45 (297)
T d1d7oa_           7 RGKRAFIAGIADDNGYGWAVAKSL-AAAGAEILVGTWVPA   45 (297)
T ss_dssp             TTCEEEEECCSSSSSHHHHHHHHH-HHTTCEEEEEEEHHH
T ss_pred             CCCEEEEECCCCCchHHHHHHHHH-HHCCCEEEEEeCchh
Confidence            689999999876  8999988777 457999999887654

>d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: DTDP-4-dehydrorhamnose reductase RfbD
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=94.81  E-value=0.045  Score=44.55  Aligned_cols=61  Identities=26%  Similarity=0.219  Sum_probs=42.7

Q ss_pred             EEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCcEEEEcCCchhHHHHHHHHhCCCcccEEEECCCCc
Q psy1959         164 TVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNKVLEVSGGKYANVVFEAVGGE  243 (296)
Q Consensus       164 ~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~g~d~vld~~g~~  243 (296)
                      +|||+|++|-+|...+..+ +..|.+|+.+++++-              +..+...+.+.+.+    ..+|+|+.+.+..
T Consensus         3 KIlItGasGfiG~~l~~~L-~~~g~~Vi~~~r~~~--------------D~~d~~~~~~~l~~----~~~d~vih~a~~~   63 (281)
T d1vl0a_           3 KILITGANGQLGREIQKQL-KGKNVEVIPTDVQDL--------------DITNVLAVNKFFNE----KKPNVVINCAAHT   63 (281)
T ss_dssp             EEEEESTTSHHHHHHHHHH-TTSSEEEEEECTTTC--------------CTTCHHHHHHHHHH----HCCSEEEECCCCC
T ss_pred             EEEEECCCCHHHHHHHHHH-HhCCCEEEEeechhc--------------cCCCHHHHHHHHHH----cCCCEEEeecccc
Confidence            5899999999999999999 568999999987531              22231222233322    3678999988754

>d1n7ha_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=94.77  E-value=0.049  Score=45.77  Aligned_cols=33  Identities=18%  Similarity=0.131  Sum_probs=29.2

Q ss_pred             cEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCC
Q psy1959         163 QTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNS  196 (296)
Q Consensus       163 ~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~  196 (296)
                      +++||+|++|-+|...+..+ ...|.+|+++++.
T Consensus         2 k~~LVTGatGfiG~~lv~~L-l~~g~~V~~~~r~   34 (339)
T d1n7ha_           2 KIALITGITGQDGSYLTEFL-LGKGYEVHGLIRR   34 (339)
T ss_dssp             CEEEEETTTSHHHHHHHHHH-HHTTCEEEEEECC
T ss_pred             CEEEEeCCccHHHHHHHHHH-HHCcCEEEEEECC
Confidence            57999999999999988888 4579999999974

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=94.73  E-value=0.032  Score=40.61  Aligned_cols=74  Identities=20%  Similarity=0.233  Sum_probs=53.3

Q ss_pred             EEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCcEEEEcCCchhHHHHHHHHhCCCcccEEEECCCCc
Q psy1959         164 TVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNKVLEVSGGKYANVVFEAVGGE  243 (296)
Q Consensus       164 ~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~g~d~vld~~g~~  243 (296)
                      +++|.|. |.+|+.+++.+ ...|.+|++++.++++.+.+++.+....+ .+.  .-.+.+.++ +-..+|.++-+.++.
T Consensus         2 ~~iIiG~-G~~G~~la~~L-~~~g~~vvvid~d~~~~~~~~~~~~~~~~-gd~--~~~~~l~~a-~i~~a~~vi~~~~~~   75 (134)
T d2hmva1           2 QFAVIGL-GRFGGSIVKEL-HRMGHEVLAVDINEEKVNAYASYATHAVI-ANA--TEENELLSL-GIRNFEYVIVAIGAN   75 (134)
T ss_dssp             CEEEECC-SHHHHHHHHHH-HHTTCCCEEEESCHHHHHHTTTTCSEEEE-CCT--TCTTHHHHH-TGGGCSEEEECCCSC
T ss_pred             EEEEECC-CHHHHHHHHHH-HHCCCeEEEecCcHHHHHHHHHhCCccee-eec--ccchhhhcc-CCccccEEEEEcCch
Confidence            4678897 99999999999 56899999999999999999888865433 221  111223332 234688888888863

>d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-glucose-4,6-dehydratase
species: Yersinia pseudotuberculosis [TaxId: 633]

Probab=94.68  E-value=0.077  Score=44.79  Aligned_cols=77  Identities=19%  Similarity=0.147  Sum_probs=49.9

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHH-Hhc----CCcEE-EEcCCchhHHHHHHHHhCCCccc
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLI-RQK----GAWAA-LTFTNEKSLVNKVLEVSGGKYAN  234 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~-~~~----g~~~~-~~~~~~~~~~~~i~~~~~~~g~d  234 (296)
                      ++++|||+|++|-+|..+++.+ ...|.+|+++++.+.+...+ +..    +...+ .+..+ .   +.+.+......+|
T Consensus         7 ~~KkILVTG~tGfIGs~lv~~L-l~~g~~V~~~~r~~~~~~~~~~~~~~~~~i~~~~~Dl~d-~---~~l~~~~~~~~~~   81 (356)
T d1rkxa_           7 QGKRVFVTGHTGFKGGWLSLWL-QTMGATVKGYSLTAPTVPSLFETARVADGMQSEIGDIRD-Q---NKLLESIREFQPE   81 (356)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHH-HHTTCEEEEEESSCSSSSCHHHHTTTTTTSEEEECCTTC-H---HHHHHHHHHHCCS
T ss_pred             CCCEEEEECCCCHHHHHHHHHH-HHCCCEEEEEECCCCccHHHHhhhhcccCCeEEEeeccC-h---Hhhhhhhhhchhh
Confidence            5799999999999999999999 55799999999877644322 211    22222 12223 2   2222222233678


Q ss_pred             EEEECCCC
Q psy1959         235 VVFEAVGG  242 (296)
Q Consensus       235 ~vld~~g~  242 (296)
                      +++.+.+.
T Consensus        82 ~v~~~aa~   89 (356)
T d1rkxa_          82 IVFHMAAQ   89 (356)
T ss_dssp             EEEECCSC
T ss_pred             hhhhhhcc
Confidence            99998875

>d1jtva_ c.2.1.2 (A:) Human estrogenic 17beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Human estrogenic 17beta-hydroxysteroid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.65  E-value=0.043  Score=45.67  Aligned_cols=78  Identities=18%  Similarity=0.161  Sum_probs=45.8

Q ss_pred             cEEEEEcCCCcHHHHHHHHHHHhCCCEEEEE---eCCcchHHHH----Hhc---CCcEE---EEcCCchhHHHHHHHHhC
Q psy1959         163 QTVLVTAAGGGLGLAAVDMATKIYKAKVIGV---CNSEDKTDLI----RQK---GAWAA---LTFTNEKSLVNKVLEVSG  229 (296)
Q Consensus       163 ~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~---~~~~~~~~~~----~~~---g~~~~---~~~~~~~~~~~~i~~~~~  229 (296)
                      +.++|+|+++|+|.+++..+ ...|++|+.+   .++.++.+.+    +++   +....   .+..+..+..+.+.+.. 
T Consensus         3 kVvlITGassGIG~a~A~~l-a~~Ga~v~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~-   80 (285)
T d1jtva_           3 TVVLITGCSSGIGLHLAVRL-ASDPSQSFKVYATLRDLKTQGRLWEAARALACPPGSLETLQLDVRDSKSVAAARERVT-   80 (285)
T ss_dssp             EEEEESCCSSHHHHHHHHHH-HTCTTCCEEEEEEESCGGGTHHHHHHHHHTTCCTTSEEEEECCTTCHHHHHHHHHTCT-
T ss_pred             CEEEEccCCCHHHHHHHHHH-HHCCCCeEEEEEecCChhhhHHHHHHHHHHhccCCceEEEeccccchHhhhhhhhhcc-
Confidence            45689999999999987776 4478875444   3443333322    232   33222   23444244444444433 


Q ss_pred             CCcccEEEECCCC
Q psy1959         230 GKYANVVFEAVGG  242 (296)
Q Consensus       230 ~~g~d~vld~~g~  242 (296)
                      ...+|+++++.|.
T Consensus        81 ~g~idilvnnag~   93 (285)
T d1jtva_          81 EGRVDVLVCNAGL   93 (285)
T ss_dssp             TSCCSEEEECCCC
T ss_pred             ccchhhhhhcccc
Confidence            3579999998874

>d1uaya_ c.2.1.2 (A:) Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=94.57  E-value=0.018  Score=46.33  Aligned_cols=38  Identities=26%  Similarity=0.270  Sum_probs=31.8

Q ss_pred             CcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchH
Q psy1959         162 KQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKT  200 (296)
Q Consensus       162 g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~  200 (296)
                      ++++||+|+++++|.+.++.+ ...|++|+++++++++.
T Consensus         1 DK~alITGas~GIG~aiA~~l-a~~Ga~V~i~~~~~~~~   38 (241)
T d1uaya_           1 ERSALVTGGASGLGRAAALAL-KARGYRVVVLDLRREGE   38 (241)
T ss_dssp             CCEEEEETTTSHHHHHHHHHH-HHHTCEEEEEESSCCSS
T ss_pred             CCEEEEeCCCCHHHHHHHHHH-HHCCCEEEEEECCcccc
Confidence            368899999999999988777 44699999999887654

>d1orra_ c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: 90370]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-tyvelose-2-epimerase
species: Salmonella typhi [TaxId: 90370]

Probab=94.53  E-value=0.042  Score=45.92  Aligned_cols=74  Identities=16%  Similarity=0.207  Sum_probs=45.7

Q ss_pred             EEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCC--cch---HHHHHhcCCcEEEE--cCCchhHHHHHHHHhCCCcccEE
Q psy1959         164 TVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNS--EDK---TDLIRQKGAWAALT--FTNEKSLVNKVLEVSGGKYANVV  236 (296)
Q Consensus       164 ~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~--~~~---~~~~~~~g~~~~~~--~~~~~~~~~~i~~~~~~~g~d~v  236 (296)
                      +|||+|++|-+|...++.+ ...|.+|+++++-  ..+   ...+...+.-..+.  ..+...+.+.+.    +..+|+|
T Consensus         2 KILVTGatGfIGs~lv~~L-l~~g~~V~~id~~~~~~~~~~~~~~~~~~~~~~i~~Di~~~~~l~~~~~----~~~~d~V   76 (338)
T d1orra_           2 KLLITGGCGFLGSNLASFA-LSQGIDLIVFDNLSRKGATDNLHWLSSLGNFEFVHGDIRNKNDVTRLIT----KYMPDSC   76 (338)
T ss_dssp             EEEEETTTSHHHHHHHHHH-HHTTCEEEEEECCCSTTHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHH----HHCCSEE
T ss_pred             EEEEECCCcHHHHHHHHHH-HHCcCEEEEEECCCcccchhHHHHhhccCCcEEEEcccCCHHHHHHHHH----hcCCceE
Confidence            6999999999999988887 4479999998742  222   23333333223332  223123333332    3368999


Q ss_pred             EECCCC
Q psy1959         237 FEAVGG  242 (296)
Q Consensus       237 ld~~g~  242 (296)
                      +.+.+.
T Consensus        77 ih~aa~   82 (338)
T d1orra_          77 FHLAGQ   82 (338)
T ss_dssp             EECCCC
T ss_pred             Eeeccc
Confidence            998874

>d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ribosomal protein L11 methyltransferase PrmA
domain: PrmA-like protein TTHA0656 (TT0836)
species: Thermus thermophilus [TaxId: 274]

Probab=94.49  E-value=0.21  Score=40.67  Aligned_cols=122  Identities=15%  Similarity=0.082  Sum_probs=70.1

Q ss_pred             CceEECCCCCCHHHHhhhccHHHHHHHHHHHHcCCCCCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHH
Q psy1959         125 NDVFKIPEKMTFEHAASLADSYSTAQIVFSRHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIR  204 (296)
Q Consensus       125 ~~~~~iP~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~  204 (296)
                      ...+.+.++|.+-...-  .........+..  ..++|++||=.|+ | .|..++.++ + .|++|+.+|.+++-.+.++
T Consensus        88 ~~~i~i~pg~aFGTG~H--~TT~l~l~~l~~--~~~~g~~VLDiGc-G-sG~l~i~aa-~-~g~~V~gvDis~~av~~A~  159 (254)
T d2nxca1          88 EIPLVIEPGMAFGTGHH--ETTRLALKALAR--HLRPGDKVLDLGT-G-SGVLAIAAE-K-LGGKALGVDIDPMVLPQAE  159 (254)
T ss_dssp             SEEEECCCC-----CCS--HHHHHHHHHHHH--HCCTTCEEEEETC-T-TSHHHHHHH-H-TTCEEEEEESCGGGHHHHH
T ss_pred             ceEEEEccccccCcccc--chhhHHHHHHHh--hcCccCEEEEccc-c-hhHHHHHHH-h-cCCEEEEEECChHHHHHHH
Confidence            45566777766543320  011112233322  2578999998887 3 366667666 4 5899999999999887776


Q ss_pred             h----cCCcEEEEcCCchhHHHHHHHHhCCCcccEEEECCCCc----cHHHHHHHhhccCceEEee
Q psy1959         205 Q----KGAWAALTFTNEKSLVNKVLEVSGGKYANVVFEAVGGE----DKTDLIRQKGAWAALTFTN  262 (296)
Q Consensus       205 ~----~g~~~~~~~~~~~~~~~~i~~~~~~~g~d~vld~~g~~----~~~~~~~~lg~~~g~~~~~  262 (296)
                      +    .+....+...+   ..+    ......+|+++.+....    .+....+.| +++|.+.++
T Consensus       160 ~na~~n~~~~~~~~~d---~~~----~~~~~~fD~V~ani~~~~l~~l~~~~~~~L-kpGG~lilS  217 (254)
T d2nxca1         160 ANAKRNGVRPRFLEGS---LEA----ALPFGPFDLLVANLYAELHAALAPRYREAL-VPGGRALLT  217 (254)
T ss_dssp             HHHHHTTCCCEEEESC---HHH----HGGGCCEEEEEEECCHHHHHHHHHHHHHHE-EEEEEEEEE
T ss_pred             HHHHHcCCceeEEecc---ccc----cccccccchhhhccccccHHHHHHHHHHhc-CCCcEEEEE
Confidence            4    35433222222   221    12234799999876543    244566667 888888664

>d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sulfolipid biosynthesis protein SQD1
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=94.48  E-value=0.021  Score=49.46  Aligned_cols=32  Identities=22%  Similarity=0.068  Sum_probs=27.7

Q ss_pred             CcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEe
Q psy1959         162 KQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVC  194 (296)
Q Consensus       162 g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~  194 (296)
                      |.+|||+|++|-+|..++..+ ...|.+|+++|
T Consensus         1 g~kILVTGatGfiG~~lv~~L-l~~g~~V~~iD   32 (393)
T d1i24a_           1 GSRVMVIGGDGYCGWATALHL-SKKNYEVCIVD   32 (393)
T ss_dssp             -CEEEEETTTSHHHHHHHHHH-HHTTCEEEEEE
T ss_pred             CCEEEEECCCcHHHHHHHHHH-HHCcCEEEEEe
Confidence            689999999999999988888 45799999997

>d1e7wa_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Leishmania major [TaxId: 5664]

Probab=94.45  E-value=0.078  Score=43.47  Aligned_cols=37  Identities=19%  Similarity=0.107  Sum_probs=28.2

Q ss_pred             EEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCC-cchHH
Q psy1959         164 TVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNS-EDKTD  201 (296)
Q Consensus       164 ~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~-~~~~~  201 (296)
                      .++|+|+++++|.+.++.+ ...|++|++.+++ +++.+
T Consensus         4 VAlITGas~GIG~aiA~~l-a~~Ga~V~i~~~~~~~~~~   41 (284)
T d1e7wa_           4 VALVTGAAKRLGRSIAEGL-HAEGYAVCLHYHRSAAEAN   41 (284)
T ss_dssp             EEEETTCSSHHHHHHHHHH-HHTTCEEEEEESSCHHHHH
T ss_pred             EEEEeCCCCHHHHHHHHHH-HHcCCEEEEEeCCCHHHHH
Confidence            4689999999999987777 4579999987664 33433

>d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Escherichia coli [TaxId: 562]

Probab=94.42  E-value=0.049  Score=46.04  Aligned_cols=74  Identities=20%  Similarity=0.110  Sum_probs=45.5

Q ss_pred             EEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCC----cchHHHHHh---cCCcEE-EEcCCchhHHHHHHHHhCCCcccE
Q psy1959         164 TVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNS----EDKTDLIRQ---KGAWAA-LTFTNEKSLVNKVLEVSGGKYANV  235 (296)
Q Consensus       164 ~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~----~~~~~~~~~---~g~~~~-~~~~~~~~~~~~i~~~~~~~g~d~  235 (296)
                      +|||+|++|-+|+..+..+ ...|.+|+++++.    .......+.   ..+..+ .+..+ .   +.+.+.....++|+
T Consensus         2 KiLItG~tGfIG~~l~~~L-~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d-~---~~l~~~~~~~~~d~   76 (338)
T d1udca_           2 RVLVTGGSGYIGSHTCVQL-LQNGHDVIILDNLCNSKRSVLPVIERLGGKHPTFVEGDIRN-E---ALMTEILHDHAIDT   76 (338)
T ss_dssp             EEEEETTTSHHHHHHHHHH-HHTTCEEEEEECCSSCCTTHHHHHHHHHTSCCEEEECCTTC-H---HHHHHHHHHTTCSE
T ss_pred             EEEEECCCCHHHHHHHHHH-HHCcCEEEEEECCCCcchhhHHHHHhhcCCCCEEEEeecCC-H---HHHHHHHhccCCCE
Confidence            5999999999999988888 4579999999752    222232222   233222 22233 1   23333332347999


Q ss_pred             EEECCCC
Q psy1959         236 VFEAVGG  242 (296)
Q Consensus       236 vld~~g~  242 (296)
                      ||.+.+.
T Consensus        77 ViHlAa~   83 (338)
T d1udca_          77 VIHFAGL   83 (338)
T ss_dssp             EEECCSC
T ss_pred             EEECCCc
Confidence            9998763

>d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=94.25  E-value=0.036  Score=42.29  Aligned_cols=41  Identities=15%  Similarity=0.142  Sum_probs=34.2

Q ss_pred             EEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHh
Q psy1959         164 TVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQ  205 (296)
Q Consensus       164 ~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~  205 (296)
                      +|.|+|++|++|.+.++.+ ...|.+|++.+|++++.+.+.+
T Consensus         2 ki~vigGaG~iG~alA~~l-a~~G~~V~l~~R~~e~~~~l~~   42 (212)
T d1jaya_           2 RVALLGGTGNLGKGLALRL-ATLGHEIVVGSRREEKAEAKAA   42 (212)
T ss_dssp             EEEEETTTSHHHHHHHHHH-HTTTCEEEEEESSHHHHHHHHH
T ss_pred             EEEEEeCCcHHHHHHHHHH-HHCCCEEEEEECCHHHHHHHHH
Confidence            5788877799999988888 5579999999999998776643

>d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.13  E-value=0.12  Score=41.36  Aligned_cols=109  Identities=15%  Similarity=0.083  Sum_probs=68.0

Q ss_pred             cHHHHHHHHHHHHc--CCCCCcEEEEEcCCCcHHHHHHHHHHHhC-CCEEEEEeCCcchHHHHHhc----CC-----c-E
Q psy1959         144 DSYSTAQIVFSRHA--KLKEKQTVLVTAAGGGLGLAAVDMATKIY-KAKVIGVCNSEDKTDLIRQK----GA-----W-A  210 (296)
Q Consensus       144 ~~~~ta~~~l~~~~--~~~~g~~vlI~Ga~g~vG~aa~~la~~~~-g~~Vi~~~~~~~~~~~~~~~----g~-----~-~  210 (296)
                      .+...|. .+ +..  .+++|++||-.|+  +.|+.++.+|+... ..+|+.++.+++-.+.+++.    +.     . .
T Consensus        59 ~P~~~a~-~l-e~L~~~l~~g~~VLdiG~--GsGy~ta~la~l~~~~g~V~~ie~~~~l~~~a~~~l~~~~~~~~~~~~~  134 (224)
T d1i1na_          59 APHMHAY-AL-ELLFDQLHEGAKALDVGS--GSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRV  134 (224)
T ss_dssp             CHHHHHH-HH-HHTTTTSCTTCEEEEETC--TTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSE
T ss_pred             hhHHHHH-HH-HHHhhccCCCCeEEEecC--CCCHHHHHHHHHhCCCceEEEEcCCHHHHHHHHHhccccCcccccccce
Confidence            3444444 33 333  7899999999995  44788778884332 45999999998877666432    21     1 1


Q ss_pred             EEEcCCchhHHHHHHHHhCCCcccEEEECCCC-ccHHHHHHHhhccCceEEeec
Q psy1959         211 ALTFTNEKSLVNKVLEVSGGKYANVVFEAVGG-EDKTDLIRQKGAWAALTFTNE  263 (296)
Q Consensus       211 ~~~~~~~~~~~~~i~~~~~~~g~d~vld~~g~-~~~~~~~~~lg~~~g~~~~~~  263 (296)
                      .+...+ .  .   ........+|+++.+..- +.....+++| ++||++.++.
T Consensus       135 ~~~~gD-~--~---~~~~~~~~fD~I~~~~~~~~ip~~l~~~L-kpGG~LV~pv  181 (224)
T d1i1na_         135 QLVVGD-G--R---MGYAEEAPYDAIHVGAAAPVVPQALIDQL-KPGGRLILPV  181 (224)
T ss_dssp             EEEESC-G--G---GCCGGGCCEEEEEECSBBSSCCHHHHHTE-EEEEEEEEEE
T ss_pred             EEEEee-c--c---cccchhhhhhhhhhhcchhhcCHHHHhhc-CCCcEEEEEE
Confidence            111111 0  0   001112368999987776 5667888999 9999987653

>d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=94.12  E-value=0.072  Score=42.71  Aligned_cols=111  Identities=13%  Similarity=0.111  Sum_probs=65.5

Q ss_pred             ccHHHHHHHHHHH-HcCCCCCcEEEEEcCCCcHHHHHHHHHH--HhCC----CEEEEEeCCcchHHHHHhc---------
Q psy1959         143 ADSYSTAQIVFSR-HAKLKEKQTVLVTAAGGGLGLAAVDMAT--KIYK----AKVIGVCNSEDKTDLIRQK---------  206 (296)
Q Consensus       143 ~~~~~ta~~~l~~-~~~~~~g~~vlI~Ga~g~vG~aa~~la~--~~~g----~~Vi~~~~~~~~~~~~~~~---------  206 (296)
                      ..+...|. .++. ...+++|++||..|+  +.|+.++.+++  ...|    .+|+.++.+++-.+.+++.         
T Consensus        62 s~P~~~a~-~l~~L~~~l~~g~~VLeIGt--GsGY~ta~la~l~g~~g~~~~~~V~~iE~~~~l~~~a~~~l~~~~~~~~  138 (223)
T d1r18a_          62 SAPHMHAF-ALEYLRDHLKPGARILDVGS--GSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSML  138 (223)
T ss_dssp             CCHHHHHH-HHHHTTTTCCTTCEEEEESC--TTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHH
T ss_pred             ehhhhHHH-HHHHHhhccCCCCeEEEecC--CCCHHHHHHHHHhhhccCCcccEEEEEecCHHHHHHHHHhhhhcchhhc
Confidence            34555553 3322 237899999999995  44666666662  2223    4899999888766665432         


Q ss_pred             CCc-EEEEcCCchhHHHHHHHHhCCCcccEEEECCCC-ccHHHHHHHhhccCceEEeec
Q psy1959         207 GAW-AALTFTNEKSLVNKVLEVSGGKYANVVFEAVGG-EDKTDLIRQKGAWAALTFTNE  263 (296)
Q Consensus       207 g~~-~~~~~~~~~~~~~~i~~~~~~~g~d~vld~~g~-~~~~~~~~~lg~~~g~~~~~~  263 (296)
                      +.. ..+...+-.      ........+|.++-+.+- +.....+++| +.+|+..++.
T Consensus       139 ~~~nv~~~~~d~~------~~~~~~~~fD~Iiv~~a~~~~p~~l~~~L-k~gG~lV~pv  190 (223)
T d1r18a_         139 DSGQLLIVEGDGR------KGYPPNAPYNAIHVGAAAPDTPTELINQL-ASGGRLIVPV  190 (223)
T ss_dssp             HHTSEEEEESCGG------GCCGGGCSEEEEEECSCBSSCCHHHHHTE-EEEEEEEEEE
T ss_pred             CccEEEEEecccc------cccccccceeeEEEEeechhchHHHHHhc-CCCcEEEEEE
Confidence            111 112211100      001112368988887776 4556778888 9999887654

>d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Phenylalanine dehydrogenase
species: Rhodococcus sp., M4 [TaxId: 1831]

Probab=94.09  E-value=0.047  Score=43.14  Aligned_cols=47  Identities=19%  Similarity=0.189  Sum_probs=42.0

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCc
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAW  209 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~  209 (296)
                      .|.+|+|.|- |.+|..+++++ ...|++|++.+.+.++......++..
T Consensus        26 ~gk~v~IqG~-G~VG~~~A~~L-~~~Gakvvv~d~d~~~~~~~~~~g~~   72 (201)
T d1c1da1          26 DGLTVLVQGL-GAVGGSLASLA-AEAGAQLLVADTDTERVAHAVALGHT   72 (201)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHH-HHTTCEEEEECSCHHHHHHHHHTTCE
T ss_pred             CCCEEEEECC-CHHHHHHHHHH-HHCCCEEEEecchHHHHHHHHhhccc
Confidence            7899999996 99999999999 56899999999999998888888764

>d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein Ta0852
species: Thermoplasma acidophilum [TaxId: 2303]

Probab=94.09  E-value=0.088  Score=42.97  Aligned_cols=97  Identities=9%  Similarity=0.057  Sum_probs=64.1

Q ss_pred             HHcCCCCCcEEEEEcCCCcHHHHHHHHHHHh-CCCEEEEEeCCcchHHHHHhc----C-CcEE-EEcCCchhHHHHHHHH
Q psy1959         155 RHAKLKEKQTVLVTAAGGGLGLAAVDMATKI-YKAKVIGVCNSEDKTDLIRQK----G-AWAA-LTFTNEKSLVNKVLEV  227 (296)
Q Consensus       155 ~~~~~~~g~~vlI~Ga~g~vG~aa~~la~~~-~g~~Vi~~~~~~~~~~~~~~~----g-~~~~-~~~~~~~~~~~~i~~~  227 (296)
                      ...+++||++||=.|+ | .|.++..+|+.. .+.+|+.++.+++..+.+++.    + ...+ +...+   ..    +.
T Consensus        79 ~~l~i~pG~rVLEiG~-G-sG~lt~~la~~v~~~g~V~~vD~~e~~~~~A~~n~~~~~~~~nv~~~~~D---i~----~~  149 (250)
T d1yb2a1          79 MRCGLRPGMDILEVGV-G-SGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSD---IA----DF  149 (250)
T ss_dssp             --CCCCTTCEEEEECC-T-TSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSC---TT----TC
T ss_pred             HHcCCCCcCEEEEeee-e-CcHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhcCCCceEEEEee---ee----cc
Confidence            5789999999999886 3 366677777432 245999999999988877652    2 2222 22222   11    11


Q ss_pred             hCCCcccEEEECCCC--ccHHHHHHHhhccCceEEe
Q psy1959         228 SGGKYANVVFEAVGG--EDKTDLIRQKGAWAALTFT  261 (296)
Q Consensus       228 ~~~~g~d~vld~~g~--~~~~~~~~~lg~~~g~~~~  261 (296)
                      .....+|.|+-....  +.+..+.+.| ++||.+.+
T Consensus       150 ~~~~~fD~V~ld~p~p~~~l~~~~~~L-KpGG~lv~  184 (250)
T d1yb2a1         150 ISDQMYDAVIADIPDPWNHVQKIASMM-KPGSVATF  184 (250)
T ss_dssp             CCSCCEEEEEECCSCGGGSHHHHHHTE-EEEEEEEE
T ss_pred             cccceeeeeeecCCchHHHHHHHHHhc-CCCceEEE
Confidence            234579988865555  5789999999 99998754

>d2bkaa1 c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: TAT-interacting protein TIP30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.02  E-value=0.022  Score=45.73  Aligned_cols=75  Identities=16%  Similarity=0.153  Sum_probs=47.0

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCC--EEEEEeCCcchHHHHHhcCCcEE-EEcCCchhHHHHHHHHhCCCcccEEE
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKA--KVIGVCNSEDKTDLIRQKGAWAA-LTFTNEKSLVNKVLEVSGGKYANVVF  237 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~--~Vi~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~i~~~~~~~g~d~vl  237 (296)
                      .+++|+|+|++|-+|...++.+.+ .|.  +|++++|++.+....+....... .+..+    .+.+.+..  .++|+++
T Consensus        13 ~~k~IlItGaTG~iG~~l~~~Ll~-~g~~~~v~~~~R~~~~~~~~~~~~i~~~~~D~~~----~~~~~~~~--~~~d~vi   85 (232)
T d2bkaa1          13 QNKSVFILGASGETGRVLLKEILE-QGLFSKVTLIGRRKLTFDEEAYKNVNQEVVDFEK----LDDYASAF--QGHDVGF   85 (232)
T ss_dssp             TCCEEEEECTTSHHHHHHHHHHHH-HTCCSEEEEEESSCCCCCSGGGGGCEEEECCGGG----GGGGGGGG--SSCSEEE
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHh-CCCCCEEEEEecChhhhcccccceeeeeeecccc----cccccccc--ccccccc
Confidence            457899999999999998888844 464  89999986654332221122211 12221    12233333  4789999


Q ss_pred             ECCCC
Q psy1959         238 EAVGG  242 (296)
Q Consensus       238 d~~g~  242 (296)
                      .|.|.
T Consensus        86 ~~~~~   90 (232)
T d2bkaa1          86 CCLGT   90 (232)
T ss_dssp             ECCCC
T ss_pred             ccccc
Confidence            99985

>d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Escherichia coli [TaxId: 562]

Probab=93.93  E-value=0.051  Score=46.43  Aligned_cols=34  Identities=18%  Similarity=0.157  Sum_probs=28.2

Q ss_pred             cEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCc
Q psy1959         163 QTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSE  197 (296)
Q Consensus       163 ~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~  197 (296)
                      +.+||+|++|-+|..++..+ ...|.+|+++++..
T Consensus         2 K~vLITGatGfiGs~lv~~L-l~~g~~V~~~~r~~   35 (357)
T d1db3a_           2 KVALITGVTGQDGSYLAEFL-LEKGYEVHGIKRRA   35 (357)
T ss_dssp             CEEEEETTTSHHHHHHHHHH-HHTTCEEEEECC--
T ss_pred             CEEEEeCCCcHHHHHHHHHH-HHCcCEEEEEECCC
Confidence            67899999999999888888 45799999999843

>d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.61  E-value=0.4  Score=36.16  Aligned_cols=95  Identities=14%  Similarity=0.073  Sum_probs=64.2

Q ss_pred             HHHHHHHHcC-CCCCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCcEEEEcCCchhHHHHHHHH
Q psy1959         149 AQIVFSRHAK-LKEKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNKVLEV  227 (296)
Q Consensus       149 a~~~l~~~~~-~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~  227 (296)
                      .+.++.+..+ +-.|++++|.| .|-+|..+++.+ +.+|++|++.+.++-+.-.+..-|...       ..+.    +.
T Consensus        10 ~~~~~~r~t~~~l~Gk~v~V~G-yG~iG~g~A~~~-rg~G~~V~v~e~dp~~al~A~~dG~~v-------~~~~----~a   76 (163)
T d1li4a1          10 LIDGIKRATDVMIAGKVAVVAG-YGDVGKGCAQAL-RGFGARVIITEIDPINALQAAMEGYEV-------TTMD----EA   76 (163)
T ss_dssp             HHHHHHHHHCCCCTTCEEEEEC-CSHHHHHHHHHH-HHTTCEEEEECSCHHHHHHHHHTTCEE-------CCHH----HH
T ss_pred             HHHHHHHHhCceecCCEEEEec-cccccHHHHHHH-HhCCCeeEeeecccchhHHhhcCceEe-------eehh----hh
Confidence            4444445444 34899999999 599999999999 679999999999876655555445432       1111    11


Q ss_pred             hCCCcccEEEECCCC-c-cHHHHHHHhhccCceE
Q psy1959         228 SGGKYANVVFEAVGG-E-DKTDLIRQKGAWAALT  259 (296)
Q Consensus       228 ~~~~g~d~vld~~g~-~-~~~~~~~~lg~~~g~~  259 (296)
                      .  ...|+++-+.|+ . .-.+-++.| +.+..+
T Consensus        77 ~--~~adivvtaTGn~~vI~~eh~~~M-KdgaIL  107 (163)
T d1li4a1          77 C--QEGNIFVTTTGCIDIILGRHFEQM-KDDAIV  107 (163)
T ss_dssp             T--TTCSEEEECSSCSCSBCHHHHTTC-CTTEEE
T ss_pred             h--hhccEEEecCCCccchhHHHHHhc-cCCeEE
Confidence            1  257899999998 3 344567777 444433

>d1z45a2 c.2.1.2 (A:11-357) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.59  E-value=0.15  Score=43.07  Aligned_cols=75  Identities=15%  Similarity=0.091  Sum_probs=45.7

Q ss_pred             cEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcc----hH---HHHHhcCCcEE-EEcCCchhHHHHHHHHhCCCccc
Q psy1959         163 QTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSED----KT---DLIRQKGAWAA-LTFTNEKSLVNKVLEVSGGKYAN  234 (296)
Q Consensus       163 ~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~----~~---~~~~~~g~~~~-~~~~~~~~~~~~i~~~~~~~g~d  234 (296)
                      +.|||+|++|-+|...+..+ ...|.+|+++++...    ..   +.....+...+ .+..+ .   +.+.......++|
T Consensus         2 K~ILVTGatGfIG~~lv~~L-l~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d-~---~~l~~~~~~~~~d   76 (347)
T d1z45a2           2 KIVLVTGGAGYIGSHTVVEL-IENGYDCVVADNLSNSTYDSVARLEVLTKHHIPFYEVDLCD-R---KGLEKVFKEYKID   76 (347)
T ss_dssp             CEEEEETTTSHHHHHHHHHH-HHTTCEEEEEECCSSCCTHHHHHHHHHHTSCCCEEECCTTC-H---HHHHHHHHHSCCC
T ss_pred             CEEEEeCCCcHHHHHHHHHH-HHCcCeEEEEECCCCcchhHHHhHHhhcccCCeEEEeecCC-H---HHHHHHHhccCCC
Confidence            57999999999999988887 447999999875221    11   22222233332 22333 2   2233322234799


Q ss_pred             EEEECCCC
Q psy1959         235 VVFEAVGG  242 (296)
Q Consensus       235 ~vld~~g~  242 (296)
                      +|+.+.+.
T Consensus        77 ~VihlAa~   84 (347)
T d1z45a2          77 SVIHFAGL   84 (347)
T ss_dssp             EEEECCSC
T ss_pred             EEEEcccc
Confidence            99998874

>d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Negative transcriptional regulator NmrA
species: Aspergillus nidulans [TaxId: 162425]

Probab=93.18  E-value=0.22  Score=41.87  Aligned_cols=76  Identities=16%  Similarity=0.058  Sum_probs=47.7

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHH--HHHhc-CCcEEEEcCCchhHHHHHHHHhCCCcccEEE
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTD--LIRQK-GAWAALTFTNEKSLVNKVLEVSGGKYANVVF  237 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~--~~~~~-g~~~~~~~~~~~~~~~~i~~~~~~~g~d~vl  237 (296)
                      +.++|+|+|++|.+|..++..+ ...|.+|+++.|+.++..  .+... ++ .++..+- .+....+..+..  +.|.++
T Consensus         2 ~kktIlVtGatG~iG~~lv~~L-l~~G~~V~~l~R~~~~~~~~~~~~~~~v-~~~~gD~-~d~~~~~~~a~~--~~~~~~   76 (350)
T d1xgka_           2 QKKTIAVVGATGRQGASLIRVA-AAVGHHVRAQVHSLKGLIAEELQAIPNV-TLFQGPL-LNNVPLMDTLFE--GAHLAF   76 (350)
T ss_dssp             CCCCEEEESTTSHHHHHHHHHH-HHTTCCEEEEESCSCSHHHHHHHTSTTE-EEEESCC-TTCHHHHHHHHT--TCSEEE
T ss_pred             CCCEEEEECCChHHHHHHHHHH-HhCCCeEEEEECCcchhhhhhhcccCCC-EEEEeeC-CCcHHHHHHHhc--CCceEE
Confidence            4578999999999999988888 457999999998766543  33333 33 2332221 222233444443  567666


Q ss_pred             ECCC
Q psy1959         238 EAVG  241 (296)
Q Consensus       238 d~~g  241 (296)
                      ....
T Consensus        77 ~~~~   80 (350)
T d1xgka_          77 INTT   80 (350)
T ss_dssp             ECCC
T ss_pred             eecc
Confidence            6443

>d1rpna_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=93.01  E-value=0.29  Score=40.32  Aligned_cols=45  Identities=20%  Similarity=0.189  Sum_probs=34.5

Q ss_pred             cEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcc--hHHHHHhcCC
Q psy1959         163 QTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSED--KTDLIRQKGA  208 (296)
Q Consensus       163 ~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~--~~~~~~~~g~  208 (296)
                      ++|||+|++|-+|..++..+ ...|.+|+++++...  +...++++..
T Consensus         1 k~vLItG~tGfiG~~l~~~L-l~~g~~V~~~~r~~~~~~~~~l~~~~~   47 (321)
T d1rpna_           1 RSALVTGITGQDGAYLAKLL-LEKGYRVHGLVARRSSDTRWRLRELGI   47 (321)
T ss_dssp             CEEEEETTTSHHHHHHHHHH-HHTTCEEEEEECCCSSCCCHHHHHTTC
T ss_pred             CEEEEECCCCHHHHHHHHHH-HHCcCEEEEEECCCCcccHHHHHHhcc
Confidence            47999999999999998877 346999999997543  3455555543

>d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Pinoresinol-lariciresinol reductase
species: Giant arborvitae (Thuja plicata) [TaxId: 3316]

Probab=92.99  E-value=0.17  Score=41.33  Aligned_cols=36  Identities=19%  Similarity=0.188  Sum_probs=30.0

Q ss_pred             CcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcc
Q psy1959         162 KQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSED  198 (296)
Q Consensus       162 g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~  198 (296)
                      -++|||+|++|-+|..++..+ ...|.+|++++|+..
T Consensus         3 k~KILVtGatG~iG~~l~~~L-~~~G~~V~~~~R~~~   38 (312)
T d1qyda_           3 KSRVLIVGGTGYIGKRIVNAS-ISLGHPTYVLFRPEV   38 (312)
T ss_dssp             CCCEEEESTTSTTHHHHHHHH-HHTTCCEEEECCSCC
T ss_pred             CCEEEEECCCCHHHHHHHHHH-HhCCCEEEEEECCCc
Confidence            456999999999999998877 447999999998654

>d1nvmb1 c.2.1.3 (B:1-131,B:287-312) Acetaldehyde dehydrogenase (acylating) {Pseudomonas sp. [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Acetaldehyde dehydrogenase (acylating)
species: Pseudomonas sp. [TaxId: 306]

Probab=92.82  E-value=0.4  Score=35.87  Aligned_cols=93  Identities=10%  Similarity=0.127  Sum_probs=54.1

Q ss_pred             cEEEEEcCCCcHHH-HHHHHHHHhCCCEEEEEeC-Ccc--hHHHHHhcCCcEEEEcCCchhHHHHHHHHhCCCcccEEEE
Q psy1959         163 QTVLVTAAGGGLGL-AAVDMATKIYKAKVIGVCN-SED--KTDLIRQKGAWAALTFTNEKSLVNKVLEVSGGKYANVVFE  238 (296)
Q Consensus       163 ~~vlI~Ga~g~vG~-aa~~la~~~~g~~Vi~~~~-~~~--~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~g~d~vld  238 (296)
                      -++.|.| +|.+|. ...++.+.....+++.+.. +.+  +.+++++++.....      ...+.+.+.....++|+||.
T Consensus         5 irvaIIG-aG~ig~~~~~~~l~~~~~~el~avas~~~~~~~~~~a~~~~i~~~~------~~~d~l~~~~~~~~iDiVf~   77 (157)
T d1nvmb1           5 LKVAIIG-SGNIGTDLMIKVLRNAKYLEMGAMVGIDAASDGLARAQRMGVTTTY------AGVEGLIKLPEFADIDFVFD   77 (157)
T ss_dssp             EEEEEEC-CSHHHHHHHHHHHHHCSSEEEEEEECSCTTCHHHHHHHHTTCCEES------SHHHHHHHSGGGGGEEEEEE
T ss_pred             cEEEEEc-CcHHHHHHHHHHHhhCCcceEEEEEecchhccchhhhhhcCCcccc------cceeeeeecccccccCEEEE
Confidence            5789999 599987 4667775444557777654 333  34677778764321      11233333333347999999


Q ss_pred             CCCC-ccHHHHHHHhhccCceEEee
Q psy1959         239 AVGG-EDKTDLIRQKGAWAALTFTN  262 (296)
Q Consensus       239 ~~g~-~~~~~~~~~lg~~~g~~~~~  262 (296)
                      ++.. .+....+...-...|...++
T Consensus        78 ATpag~h~~~~~~~~aa~~G~~VID  102 (157)
T d1nvmb1          78 ATSASAHVQNEALLRQAKPGIRLID  102 (157)
T ss_dssp             CSCHHHHHHHHHHHHHHCTTCEEEE
T ss_pred             cCCchhHHHhHHHHHHHHcCCEEEE
Confidence            9875 45555443321244444333

>d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical methyltransferase TM1389
species: Thermotoga maritima [TaxId: 2336]

Probab=92.79  E-value=0.18  Score=39.88  Aligned_cols=92  Identities=17%  Similarity=0.125  Sum_probs=65.3

Q ss_pred             CCCCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCcEEEEcCCchhHHHHHHHHhCCCcccEEEE
Q psy1959         159 LKEKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNKVLEVSGGKYANVVFE  238 (296)
Q Consensus       159 ~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~g~d~vld  238 (296)
                      +.++.+||=.|+ | .|..+..++ + .|++|++++.++.-.+.+++.+....+.... .++.      .....+|+|+.
T Consensus        40 ~~~~~~vLDiGc-G-~G~~~~~l~-~-~~~~v~giD~s~~~l~~a~~~~~~~~~~~~~-~~l~------~~~~~fD~ii~  108 (246)
T d2avna1          40 LKNPCRVLDLGG-G-TGKWSLFLQ-E-RGFEVVLVDPSKEMLEVAREKGVKNVVEAKA-EDLP------FPSGAFEAVLA  108 (246)
T ss_dssp             CCSCCEEEEETC-T-TCHHHHHHH-T-TTCEEEEEESCHHHHHHHHHHTCSCEEECCT-TSCC------SCTTCEEEEEE
T ss_pred             cCCCCEEEEECC-C-Cchhccccc-c-cceEEEEeecccccccccccccccccccccc-cccc------cccccccceee
Confidence            457788888886 4 688888888 5 5899999999999999999877665544332 2210      12357999987


Q ss_pred             CCC------C--ccHHHHHHHhhccCceEEee
Q psy1959         239 AVG------G--EDKTDLIRQKGAWAALTFTN  262 (296)
Q Consensus       239 ~~g------~--~~~~~~~~~lg~~~g~~~~~  262 (296)
                      ...      +  ..+..+.+.| ++||.+.+.
T Consensus       109 ~~~~~~~~~d~~~~l~~i~r~L-k~gG~~ii~  139 (246)
T d2avna1         109 LGDVLSYVENKDKAFSEIRRVL-VPDGLLIAT  139 (246)
T ss_dssp             CSSHHHHCSCHHHHHHHHHHHE-EEEEEEEEE
T ss_pred             ecchhhhhhhHHHHHHHHHhhc-CcCcEEEEE
Confidence            544      2  2466777788 889988654

>d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Phenylcoumaran benzylic ether reductase
species: Loblolly pine (Pinus taeda) [TaxId: 3352]

Probab=92.65  E-value=0.21  Score=40.32  Aligned_cols=37  Identities=11%  Similarity=0.121  Sum_probs=31.1

Q ss_pred             CcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcch
Q psy1959         162 KQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDK  199 (296)
Q Consensus       162 g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~  199 (296)
                      -++|||+|++|-+|..++..+ ...|.+|++++++...
T Consensus         3 kkKILVtGatG~iG~~l~~~L-~~~G~~V~~l~R~~~~   39 (307)
T d1qyca_           3 RSRILLIGATGYIGRHVAKAS-LDLGHPTFLLVRESTA   39 (307)
T ss_dssp             CCCEEEESTTSTTHHHHHHHH-HHTTCCEEEECCCCCT
T ss_pred             CCEEEEECCCcHHHHHHHHHH-HHCCCeEEEEECCCcc
Confidence            367999999999999998888 4579999999986543

>d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein TM0748
species: Thermotoga maritima [TaxId: 2336]

Probab=92.48  E-value=0.17  Score=41.52  Aligned_cols=97  Identities=16%  Similarity=0.127  Sum_probs=67.1

Q ss_pred             HHcCCCCCcEEEEEcCCCcHHHHHHHHHHHh-CCCEEEEEeCCcchHHHHHh----cCCc--EEEEcCCchhHHHHHHHH
Q psy1959         155 RHAKLKEKQTVLVTAAGGGLGLAAVDMATKI-YKAKVIGVCNSEDKTDLIRQ----KGAW--AALTFTNEKSLVNKVLEV  227 (296)
Q Consensus       155 ~~~~~~~g~~vlI~Ga~g~vG~aa~~la~~~-~g~~Vi~~~~~~~~~~~~~~----~g~~--~~~~~~~~~~~~~~i~~~  227 (296)
                      ...++++|++||=.|+ |. |..+..+|+.. .+.+|+.++.+++..+.+++    ++..  ..+...+   .    ...
T Consensus        97 ~~l~i~pG~~VLDiG~-Gs-G~lt~~lA~~~~~~G~V~~vD~~~~~~~~A~~~~~~~g~~~~v~~~~~d---~----~~~  167 (266)
T d1o54a_          97 MMLDVKEGDRIIDTGV-GS-GAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRD---I----SEG  167 (266)
T ss_dssp             HHTTCCTTCEEEEECC-TT-SHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCC---G----GGC
T ss_pred             HhhCCCCCCEEEECCC-CC-CHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccccCcEEEecc---c----ccc
Confidence            6889999999998885 33 77777888432 25699999999998877754    3542  2222222   1    112


Q ss_pred             hCCCcccEEEECCCC--ccHHHHHHHhhccCceEEe
Q psy1959         228 SGGKYANVVFEAVGG--EDKTDLIRQKGAWAALTFT  261 (296)
Q Consensus       228 ~~~~g~d~vld~~g~--~~~~~~~~~lg~~~g~~~~  261 (296)
                      .....+|.++--...  ..+..+.+.| ++||.+.+
T Consensus       168 ~~~~~~D~V~~d~p~p~~~l~~~~~~L-KpGG~lv~  202 (266)
T d1o54a_         168 FDEKDVDALFLDVPDPWNYIDKCWEAL-KGGGRFAT  202 (266)
T ss_dssp             CSCCSEEEEEECCSCGGGTHHHHHHHE-EEEEEEEE
T ss_pred             ccccceeeeEecCCCHHHHHHHHHhhc-CCCCEEEE
Confidence            234568887776666  4789999999 99988743

>d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=92.40  E-value=0.18  Score=38.48  Aligned_cols=50  Identities=12%  Similarity=0.152  Sum_probs=36.4

Q ss_pred             HHHHHcCCCCCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHH
Q psy1959         152 VFSRHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIR  204 (296)
Q Consensus       152 ~l~~~~~~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~  204 (296)
                      +|.+...--++++|+|+|+ |+.+.+++..+ ...+ +|.++.|+.+|.+.+.
T Consensus         8 ~l~~~~~~~~~k~vlIlGa-GG~arai~~aL-~~~~-~i~I~nR~~~ka~~l~   57 (177)
T d1nvta1           8 ALEEEIGRVKDKNIVIYGA-GGAARAVAFEL-AKDN-NIIIANRTVEKAEALA   57 (177)
T ss_dssp             HHHHHHCCCCSCEEEEECC-SHHHHHHHHHH-TSSS-EEEEECSSHHHHHHHH
T ss_pred             HHHHhCCCcCCCEEEEECC-cHHHHHHHHHH-cccc-ceeeehhhhhHHHHHH
Confidence            3433333347899999997 99999887666 3334 9999999988876653

>d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Haemophilus influenzae [TaxId: 727]

Probab=92.35  E-value=0.78  Score=33.49  Aligned_cols=79  Identities=5%  Similarity=-0.095  Sum_probs=56.8

Q ss_pred             cEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCcEEEEcCCchhHHHHHHHHhCCC-cccEEEECCC
Q psy1959         163 QTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNKVLEVSGGK-YANVVFEAVG  241 (296)
Q Consensus       163 ~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~-g~d~vld~~g  241 (296)
                      ++|.|+|+.|.+|...+..+ +..|.+|.+.++++.........+++.++.........+.+.+....- .=.+++|+..
T Consensus        10 ~kI~iIGg~G~mG~~la~~L-~~~G~~V~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~v~~~~~~~~~~~~iiiD~~S   88 (152)
T d2pv7a2          10 HKIVIVGGYGKLGGLFARYL-RASGYPISILDREDWAVAESILANADVVIVSVPINLTLETIERLKPYLTENMLLADLTS   88 (152)
T ss_dssp             CCEEEETTTSHHHHHHHHHH-HTTTCCEEEECTTCGGGHHHHHTTCSEEEECSCGGGHHHHHHHHGGGCCTTSEEEECCS
T ss_pred             CeEEEEcCCCHHHHHHHHHH-HHcCCCcEecccccccccchhhhhccccccccchhhheeeeecccccccCCceEEEecc
Confidence            58999996699999988888 457999999999888777766677877776655444445555543211 1248888877


Q ss_pred             C
Q psy1959         242 G  242 (296)
Q Consensus       242 ~  242 (296)
                      .
T Consensus        89 v   89 (152)
T d2pv7a2          89 V   89 (152)
T ss_dssp             C
T ss_pred             c
Confidence            5

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=92.32  E-value=0.28  Score=36.75  Aligned_cols=43  Identities=16%  Similarity=0.178  Sum_probs=35.4

Q ss_pred             EEEEEcCCCcHHHHHHHHHHHhCC--CEEEEEeCCcchHHHHHhcCC
Q psy1959         164 TVLVTAAGGGLGLAAVDMATKIYK--AKVIGVCNSEDKTDLIRQKGA  208 (296)
Q Consensus       164 ~vlI~Ga~g~vG~aa~~la~~~~g--~~Vi~~~~~~~~~~~~~~~g~  208 (296)
                      +|+|.|. |.+|...+..+++ .|  .+|++.+++++..+.+++.+.
T Consensus         3 ~I~IIG~-G~mG~sla~~L~~-~g~~~~I~~~D~~~~~~~~a~~~~~   47 (171)
T d2g5ca2           3 NVLIVGV-GFMGGSFAKSLRR-SGFKGKIYGYDINPESISKAVDLGI   47 (171)
T ss_dssp             EEEEESC-SHHHHHHHHHHHH-TTCCSEEEEECSCHHHHHHHHHTTS
T ss_pred             EEEEEcc-CHHHHHHHHHHHh-cCCCeEEEEEECChHHHHHHHHhhc
Confidence            6899997 9999988877734 45  389999999999999988764

>d2blla1 c.2.1.2 (A:316-657) Polymyxin resistance protein ArnA (PrmI) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Polymyxin resistance protein ArnA (PrmI)
species: Escherichia coli [TaxId: 562]

Probab=92.31  E-value=0.16  Score=42.56  Aligned_cols=73  Identities=15%  Similarity=0.126  Sum_probs=46.2

Q ss_pred             EEEEEcCCCcHHHHHHHHHHHhCC-CEEEEEeCCcchHHHHHhcCCcEEEE--cCCchhHHHHHHHHhCCCcccEEEECC
Q psy1959         164 TVLVTAAGGGLGLAAVDMATKIYK-AKVIGVCNSEDKTDLIRQKGAWAALT--FTNEKSLVNKVLEVSGGKYANVVFEAV  240 (296)
Q Consensus       164 ~vlI~Ga~g~vG~aa~~la~~~~g-~~Vi~~~~~~~~~~~~~~~g~~~~~~--~~~~~~~~~~i~~~~~~~g~d~vld~~  240 (296)
                      +|||+|++|-+|..+++.+ ...| .+|+++++...+...+.+..-...+.  ..+..++.+.+.     +++|+|+.+.
T Consensus         2 KILITG~tGfiG~~l~~~L-l~~g~~~V~~ld~~~~~~~~~~~~~~~~~i~~Di~~~~~~~~~~~-----~~~d~Vih~a   75 (342)
T d2blla1           2 RVLILGVNGFIGNHLTERL-LREDHYEVYGLDIGSDAISRFLNHPHFHFVEGDISIHSEWIEYHV-----KKCDVVLPLV   75 (342)
T ss_dssp             EEEEETCSSHHHHHHHHHH-HHSTTCEEEEEESCCGGGGGGTTCTTEEEEECCTTTCSHHHHHHH-----HHCSEEEECB
T ss_pred             EEEEECCCcHHHHHHHHHH-HHCCCCEEEEEeCCCcchhhhccCCCeEEEECccCChHHHHHHHH-----hCCCcccccc
Confidence            5899999999999988766 3356 69999988766555444321112222  222123333222     2689999988


Q ss_pred             CC
Q psy1959         241 GG  242 (296)
Q Consensus       241 g~  242 (296)
                      +-
T Consensus        76 ~~   77 (342)
T d2blla1          76 AI   77 (342)
T ss_dssp             CC
T ss_pred             cc
Confidence            75

>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical Protein YjhP
domain: Hypothetical Protein YjhP
species: Escherichia coli [TaxId: 562]

Probab=92.29  E-value=0.21  Score=39.88  Aligned_cols=100  Identities=13%  Similarity=0.080  Sum_probs=64.9

Q ss_pred             HHHHHcCCCCCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHh----cCCc--EEEEcCCchhHHHHHH
Q psy1959         152 VFSRHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQ----KGAW--AALTFTNEKSLVNKVL  225 (296)
Q Consensus       152 ~l~~~~~~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~----~g~~--~~~~~~~~~~~~~~i~  225 (296)
                      .+....++++|++||=+|+  |.|..+..++ +..+++|+.++.+++-.+.+++    .|..  ..+...+..+      
T Consensus        24 ~l~~~~~l~pg~~VLDiGC--G~G~~~~~la-~~~~~~v~GvD~s~~~~~~ar~~~~~~gl~~~v~~~~~d~~~------   94 (245)
T d1nkva_          24 TLGRVLRMKPGTRILDLGS--GSGEMLCTWA-RDHGITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAG------   94 (245)
T ss_dssp             HHHHHTCCCTTCEEEEETC--TTCHHHHHHH-HHTCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTT------
T ss_pred             HHHHHcCCCCCCEEEEEcC--CCCHHHHHHH-HhcCCEEEEEecccchhhHHHHHHHHhhccccchhhhhHHhh------
Confidence            3557889999999998886  3356677788 4578999999999887766654    3543  2222222111      


Q ss_pred             HHhCCCcccEEEECCC-----C--ccHHHHHHHhhccCceEEee
Q psy1959         226 EVSGGKYANVVFEAVG-----G--EDKTDLIRQKGAWAALTFTN  262 (296)
Q Consensus       226 ~~~~~~g~d~vld~~g-----~--~~~~~~~~~lg~~~g~~~~~  262 (296)
                       ......+|+|+..-.     +  ..+..+.+.| +++|.+.+.
T Consensus        95 -~~~~~~fD~v~~~~~~~~~~d~~~~l~~~~r~L-kPGG~l~i~  136 (245)
T d1nkva_          95 -YVANEKCDVAACVGATWIAGGFAGAEELLAQSL-KPGGIMLIG  136 (245)
T ss_dssp             -CCCSSCEEEEEEESCGGGTSSSHHHHHHHTTSE-EEEEEEEEE
T ss_pred             -ccccCceeEEEEEehhhccCCHHHHHHHHHHHc-CcCcEEEEE
Confidence             123457998886432     2  2455566667 888888553

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=92.13  E-value=0.12  Score=36.80  Aligned_cols=40  Identities=10%  Similarity=0.176  Sum_probs=32.7

Q ss_pred             cCCCCCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcc
Q psy1959         157 AKLKEKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSED  198 (296)
Q Consensus       157 ~~~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~  198 (296)
                      ..++..++++|.|+ |.+|.-+++.+ +.+|.+|.++.+.+.
T Consensus        17 ~~l~~p~~v~IiGg-G~iG~E~A~~l-~~~g~~Vtlv~~~~~   56 (117)
T d1onfa2          17 FNIKESKKIGIVGS-GYIAVELINVI-KRLGIDSYIFARGNR   56 (117)
T ss_dssp             TTCCCCSEEEEECC-SHHHHHHHHHH-HTTTCEEEEECSSSS
T ss_pred             hccCCCCEEEEECC-chHHHHHHHHH-Hhccccceeeehhcc
Confidence            34556789999998 99999888888 568999999997653

>d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Neisseria meningitidis, serogroup B [TaxId: 487]

Probab=92.02  E-value=0.53  Score=34.61  Aligned_cols=44  Identities=14%  Similarity=0.153  Sum_probs=34.3

Q ss_pred             EEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHh-cCC
Q psy1959         164 TVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQ-KGA  208 (296)
Q Consensus       164 ~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~-~g~  208 (296)
                      +|.++|+ |.+|.+.++-..+..+.+|++.++++++.+.+++ .+.
T Consensus         2 kI~fIG~-G~MG~ai~~~l~~~~~~~i~v~~r~~~~~~~l~~~~~~   46 (152)
T d1yqga2           2 NVYFLGG-GNMAAAVAGGLVKQGGYRIYIANRGAEKRERLEKELGV   46 (152)
T ss_dssp             EEEEECC-SHHHHHHHHHHHHHCSCEEEEECSSHHHHHHHHHHTCC
T ss_pred             EEEEEcC-cHHHHHHHHHHHHCCCCcEEEEeCChhHHHHhhhhccc
Confidence            5788997 9999987774325555899999999999888765 554

>d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose-3', 5'-epimerase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=91.92  E-value=0.21  Score=42.20  Aligned_cols=77  Identities=16%  Similarity=0.054  Sum_probs=48.2

Q ss_pred             CCCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCcEEEEcCCchhHHHHHHHHhCCCcccEEEEC
Q psy1959         160 KEKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNKVLEVSGGKYANVVFEA  239 (296)
Q Consensus       160 ~~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~g~d~vld~  239 (296)
                      .+..+|||+|++|-+|..++..+ ...|.+|+++++...+.... ..........+- .+.. .+.+..  +++|.|+.+
T Consensus        13 ~~nMKILVTGgsGfIGs~lv~~L-~~~g~~V~~~d~~~~~~~~~-~~~~~~~~~~D~-~~~~-~~~~~~--~~~d~Vih~   86 (363)
T d2c5aa1          13 SENLKISITGAGGFIASHIARRL-KHEGHYVIASDWKKNEHMTE-DMFCDEFHLVDL-RVME-NCLKVT--EGVDHVFNL   86 (363)
T ss_dssp             TSCCEEEEETTTSHHHHHHHHHH-HHTTCEEEEEESSCCSSSCG-GGTCSEEEECCT-TSHH-HHHHHH--TTCSEEEEC
T ss_pred             CCCCEEEEECCCCHHHHHHHHHH-HHCcCEEEEEeCCCccchhh-hcccCcEEEeec-hhHH-HHHHHh--hcCCeEeec
Confidence            35778999999999999998888 45799999998654432111 112222222221 2333 333333  378999997


Q ss_pred             CCC
Q psy1959         240 VGG  242 (296)
Q Consensus       240 ~g~  242 (296)
                      .+.
T Consensus        87 a~~   89 (363)
T d2c5aa1          87 AAD   89 (363)
T ss_dssp             CCC
T ss_pred             ccc
Confidence            754

>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=91.63  E-value=0.26  Score=35.14  Aligned_cols=71  Identities=14%  Similarity=0.119  Sum_probs=46.6

Q ss_pred             HHcCCCCCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCcEEEEcCCchhHHHHHHHHhCCCccc
Q psy1959         155 RHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNKVLEVSGGKYAN  234 (296)
Q Consensus       155 ~~~~~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~g~d  234 (296)
                      +...-.++++++|.|+ |.+|+-+++.+ ..+|.+|.++.+.+.-+..  .         -+ .+..+.+.+....+|++
T Consensus        23 ~~~~~~~~k~vvViGg-G~iG~E~A~~l-~~~g~~Vtlie~~~~~l~~--~---------~d-~~~~~~~~~~l~~~gv~   88 (123)
T d1nhpa2          23 QKTVDPEVNNVVVIGS-GYIGIEAAEAF-AKAGKKVTVIDILDRPLGV--Y---------LD-KEFTDVLTEEMEANNIT   88 (123)
T ss_dssp             HHHTCTTCCEEEEECC-SHHHHHHHHHH-HHTTCEEEEEESSSSTTTT--T---------CC-HHHHHHHHHHHHTTTEE
T ss_pred             HHhhccCCCEEEEECC-hHHHHHHHHHh-hccceEEEEEEecCccccc--c---------cc-hhhHHHHHHHhhcCCeE
Confidence            3334456789999997 99999988888 4579999999876532210  0         01 34555555555455777


Q ss_pred             EEEEC
Q psy1959         235 VVFEA  239 (296)
Q Consensus       235 ~vld~  239 (296)
                      +.+++
T Consensus        89 ~~~~~   93 (123)
T d1nhpa2          89 IATGE   93 (123)
T ss_dssp             EEESC
T ss_pred             EEeCc
Confidence            76654

>d2b69a1 c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-glucuronate decarboxylase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.92  E-value=0.045  Score=45.85  Aligned_cols=32  Identities=25%  Similarity=0.256  Sum_probs=27.9

Q ss_pred             cEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeC
Q psy1959         163 QTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCN  195 (296)
Q Consensus       163 ~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~  195 (296)
                      ++|||+|++|-+|...+..+ ...|.+|+++++
T Consensus         2 KKIlVtG~sGfiG~~lv~~L-~~~g~~V~~~d~   33 (312)
T d2b69a1           2 KRILITGGAGFVGSHLTDKL-MMDGHEVTVVDN   33 (312)
T ss_dssp             CEEEEETTTSHHHHHHHHHH-HHTTCEEEEEEC
T ss_pred             CEEEEECCCcHHHHHHHHHH-HHCcCEEEEEeC
Confidence            57999999999999988888 347999999985

>d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=90.82  E-value=0.38  Score=33.80  Aligned_cols=42  Identities=10%  Similarity=0.067  Sum_probs=34.6

Q ss_pred             HHcCCCCCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcc
Q psy1959         155 RHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSED  198 (296)
Q Consensus       155 ~~~~~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~  198 (296)
                      +.....++++++|.|+ |.+|.=.+..+ +..|.+|.++.+.+.
T Consensus        15 ~~l~~~~~~~vvVvGg-G~ig~E~A~~l-~~~g~~vt~i~~~~~   56 (121)
T d1mo9a2          15 EELDYEPGSTVVVVGG-SKTAVEYGCFF-NATGRRTVMLVRTEP   56 (121)
T ss_dssp             HHCCSCCCSEEEEECC-SHHHHHHHHHH-HHTTCEEEEECSSCT
T ss_pred             HHHhhCCCCEEEEECC-CHHHHHHHHHH-HhcchhheEeeccch
Confidence            4456678999999997 99999888888 568999999997653

>d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Pseudomonas syringae [TaxId: 317]

Probab=90.80  E-value=0.15  Score=38.68  Aligned_cols=47  Identities=17%  Similarity=0.090  Sum_probs=39.6

Q ss_pred             HcCCCCCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhc
Q psy1959         156 HAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQK  206 (296)
Q Consensus       156 ~~~~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~  206 (296)
                      ...+.+|.+||..|+  |.|..+..+| + .|++|+++|.+++-++.+++.
T Consensus        15 ~l~~~~~~rvLd~GC--G~G~~a~~la-~-~G~~V~gvD~S~~~i~~a~~~   61 (201)
T d1pjza_          15 SLNVVPGARVLVPLC--GKSQDMSWLS-G-QGYHVVGAELSEAAVERYFTE   61 (201)
T ss_dssp             HHCCCTTCEEEETTT--CCSHHHHHHH-H-HCCEEEEEEECHHHHHHHHHH
T ss_pred             HcCCCCCCEEEEecC--cCCHHHHHHH-H-cCCceEeecccHHHHHHHHHH
Confidence            346889999999997  3478999999 4 499999999999999888763

>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=90.61  E-value=0.19  Score=35.49  Aligned_cols=36  Identities=14%  Similarity=0.191  Sum_probs=30.7

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcc
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSED  198 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~  198 (296)
                      ..++++|.|+ |.+|.-+++.+ ..+|.+|.++.+.++
T Consensus        21 ~p~~v~IiGg-G~ig~E~A~~l-~~~G~~Vtlve~~~~   56 (117)
T d1ebda2          21 VPKSLVVIGG-GYIGIELGTAY-ANFGTKVTILEGAGE   56 (117)
T ss_dssp             CCSEEEEECC-SHHHHHHHHHH-HHTTCEEEEEESSSS
T ss_pred             cCCeEEEECC-Cccceeeeeee-cccccEEEEEEecce
Confidence            3478999998 99999999988 568999999987665

>d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Glycinamide ribonucleotide transformylase PurT, N-domain
species: Escherichia coli [TaxId: 562]

Probab=90.58  E-value=0.23  Score=34.97  Aligned_cols=35  Identities=23%  Similarity=0.263  Sum_probs=30.4

Q ss_pred             CcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcc
Q psy1959         162 KQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSED  198 (296)
Q Consensus       162 g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~  198 (296)
                      +.+|.|+|+ |.+|++.++-| +.+|.++++.+.+++
T Consensus        11 ~~kigIlGg-GQL~rMla~aA-~~lG~~v~v~d~~~~   45 (111)
T d1kjqa2          11 ATRVMLLGS-GELGKEVAIEC-QRLGVEVIAVDRYAD   45 (111)
T ss_dssp             CCEEEEESC-SHHHHHHHHHH-HTTTCEEEEEESSTT
T ss_pred             CCEEEEEeC-CHHHHHHHHHH-HHCCCEEEEEcCCCC
Confidence            457999997 99999999999 568999999997655

>d1leha1 c.2.1.7 (A:135-364) Leucine dehydrogenase {Bacillus sphaericus [TaxId: 1421]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Leucine dehydrogenase
species: Bacillus sphaericus [TaxId: 1421]

Probab=90.53  E-value=0.89  Score=36.16  Aligned_cols=46  Identities=20%  Similarity=0.132  Sum_probs=39.3

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHh-cCC
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQ-KGA  208 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~-~g~  208 (296)
                      .|.+|+|.|- |.+|..+++++ ...|+++++++.+..+.+.+.. .|.
T Consensus        38 ~g~~v~IqG~-GnVG~~~a~~L-~~~Gakvv~~d~~~~~~~~~~~~~g~   84 (230)
T d1leha1          38 EGLAVSVQGL-GNVAKALCKKL-NTEGAKLVVTDVNKAAVSAAVAEEGA   84 (230)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHH-HHTTCEEEEECSCHHHHHHHHHHHCC
T ss_pred             CCCEEEEECC-CHHHHHHHHHH-HHCCCEEEeecccHHHHHHHHHhcCC
Confidence            6899999996 99999999999 5689999999998888776654 454

>d1t2aa_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.52  E-value=0.36  Score=40.25  Aligned_cols=33  Identities=21%  Similarity=0.206  Sum_probs=28.3

Q ss_pred             EE-EEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCc
Q psy1959         164 TV-LVTAAGGGLGLAAVDMATKIYKAKVIGVCNSE  197 (296)
Q Consensus       164 ~v-lI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~  197 (296)
                      +| ||+|++|-+|...+..+ ...|.+|+++++..
T Consensus         2 KI~LVTG~tGfIG~~l~~~L-l~~g~~V~~i~r~~   35 (347)
T d1t2aa_           2 NVALITGITGQDGSYLAEFL-LEKGYEVHGIVRRS   35 (347)
T ss_dssp             CEEEEETTTSHHHHHHHHHH-HHTTCEEEEEECCC
T ss_pred             CEEEEecCCcHHHHHHHHHH-HHCcCEEEEEECCC
Confidence            46 99999999999988888 44799999999854

>d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Salmonella typhimurium [TaxId: 90371]

Probab=90.51  E-value=0.37  Score=35.94  Aligned_cols=43  Identities=14%  Similarity=0.034  Sum_probs=36.0

Q ss_pred             EEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCC
Q psy1959         164 TVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGA  208 (296)
Q Consensus       164 ~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~  208 (296)
                      +|.|+|. |.+|...+.-+.+ .|.+|++.++++++.+.+++.++
T Consensus         2 kIgiIGl-G~MG~~~A~~L~~-~G~~V~~~d~~~~~~~~~~~~~~   44 (161)
T d1vpda2           2 KVGFIGL-GIMGKPMSKNLLK-AGYSLVVSDRNPEAIADVIAAGA   44 (161)
T ss_dssp             EEEEECC-STTHHHHHHHHHH-TTCEEEEECSCHHHHHHHHHTTC
T ss_pred             EEEEEeh-hHHHHHHHHHHHH-CCCeEEEEeCCcchhHHHHHhhh
Confidence            4788997 9999987765524 69999999999999999888765

>d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA2
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=90.42  E-value=0.53  Score=38.92  Aligned_cols=99  Identities=11%  Similarity=0.048  Sum_probs=65.0

Q ss_pred             HHHHHcCCCCCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHh----cCCcEE--EEcCCchhHHHHHH
Q psy1959         152 VFSRHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQ----KGAWAA--LTFTNEKSLVNKVL  225 (296)
Q Consensus       152 ~l~~~~~~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~----~g~~~~--~~~~~~~~~~~~i~  225 (296)
                      .+.+.+++++|++||=+|+  |.|..+..+| +..|++|+.++.+++..+.+++    .|....  +...+   ..    
T Consensus        52 ~~~~~l~l~~G~~VLDiGC--G~G~~~~~~a-~~~g~~v~git~s~~q~~~a~~~~~~~~l~~~v~~~~~d---~~----  121 (291)
T d1kpia_          52 LALDKLNLEPGMTLLDIGC--GWGSTMRHAV-AEYDVNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQG---WE----  121 (291)
T ss_dssp             HHHHTTCCCTTCEEEEETC--TTSHHHHHHH-HHHCCEEEEEESCHHHHHHHHHHHHHSCCSSCEEEEECC---GG----
T ss_pred             HHHHhcCCCCCCEEEEecC--cchHHHHHHH-HhcCcceeeccchHHHHHHHHHHHHhhccchhhhhhhhc---cc----
Confidence            3447889999999999996  3355677888 4469999999999997665543    454322  22222   10    


Q ss_pred             HHhCCCcccEEEEC-----CCC-----------ccHHHHHHHhhccCceEEeec
Q psy1959         226 EVSGGKYANVVFEA-----VGG-----------EDKTDLIRQKGAWAALTFTNE  263 (296)
Q Consensus       226 ~~~~~~g~d~vld~-----~g~-----------~~~~~~~~~lg~~~g~~~~~~  263 (296)
                        .....+|.|+..     ++.           ..+..+.+.| +++|++.+..
T Consensus       122 --~~~~~fD~i~sie~~eH~~~~~~~~~~~~~~~~f~~i~~~L-kpgG~~~l~~  172 (291)
T d1kpia_         122 --EFDEPVDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLT-PDDGRMLLHT  172 (291)
T ss_dssp             --GCCCCCSEEEEESCGGGTTCCSSCCSTTHHHHHHHHHHHTS-CTTCEEEEEE
T ss_pred             --ccccccceEeechhHHhcchhhhhhHHHHHHHHHHHHHHhC-CCCCceEEEE
Confidence              113468988762     222           2366677888 8999886543

>d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical methyltransferase PH1305
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=90.41  E-value=0.89  Score=35.80  Aligned_cols=96  Identities=15%  Similarity=0.126  Sum_probs=62.4

Q ss_pred             HHcCCCCCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhc----CCcEEEEcCCchhHHHHHHHHhCC
Q psy1959         155 RHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQK----GAWAALTFTNEKSLVNKVLEVSGG  230 (296)
Q Consensus       155 ~~~~~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~----g~~~~~~~~~~~~~~~~i~~~~~~  230 (296)
                      .....++.++||=.|+ |. |..+..++ + .|++|++++.+++-++.+++.    +....+...+..+       +.-.
T Consensus        35 ~~~~~~~~~~iLDiGc-Gt-G~~~~~l~-~-~~~~v~gvD~s~~mi~~a~~~~~~~~~~i~~~~~d~~~-------l~~~  103 (251)
T d1wzna1          35 KEDAKREVRRVLDLAC-GT-GIPTLELA-E-RGYEVVGLDLHEEMLRVARRKAKERNLKIEFLQGDVLE-------IAFK  103 (251)
T ss_dssp             HHTCSSCCCEEEEETC-TT-CHHHHHHH-H-TTCEEEEEESCHHHHHHHHHHHHHTTCCCEEEESCGGG-------CCCC
T ss_pred             HHhcCCCCCEEEEeCC-CC-Cccchhhc-c-cceEEEEEeeccccccccccccccccccchheehhhhh-------cccc
Confidence            4556677889999997 43 78888888 4 589999999998877766543    4332222222111       1123


Q ss_pred             CcccEEEECCCC----------ccHHHHHHHhhccCceEEee
Q psy1959         231 KYANVVFEAVGG----------EDKTDLIRQKGAWAALTFTN  262 (296)
Q Consensus       231 ~g~d~vld~~g~----------~~~~~~~~~lg~~~g~~~~~  262 (296)
                      +.+|+|+...+.          ..+..+.+.| +++|.+.+.
T Consensus       104 ~~fD~I~~~~~~~~~~~~~~~~~~L~~~~~~L-kpgG~lii~  144 (251)
T d1wzna1         104 NEFDAVTMFFSTIMYFDEEDLRKLFSKVAEAL-KPGGVFITD  144 (251)
T ss_dssp             SCEEEEEECSSGGGGSCHHHHHHHHHHHHHHE-EEEEEEEEE
T ss_pred             cccchHhhhhhhhhcCChHHHHHHHHHHHHHc-CCCcEEEEE
Confidence            579999886442          1355667777 888988654

>d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain
species: Escherichia coli [TaxId: 562]

Probab=90.33  E-value=0.17  Score=33.29  Aligned_cols=35  Identities=20%  Similarity=0.134  Sum_probs=30.2

Q ss_pred             cEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcch
Q psy1959         163 QTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDK  199 (296)
Q Consensus       163 ~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~  199 (296)
                      ++|.|.|+ |-+|++.++-| +.+|.++.+.+.+++-
T Consensus         2 k~vgIlG~-GQLgrMl~~Aa-~~LG~~v~vldp~~~~   36 (78)
T d3etja2           2 KQVCVLGN-GQLGRMLRQAG-EPLGIAVWPVGLDAEP   36 (78)
T ss_dssp             EEEEEEBC-SHHHHHHHHHH-GGGTEEEEEECTTSCG
T ss_pred             CEEEEEcC-CHHHHHHHHHH-HHcCCEEEEEcCCCCC
Confidence            57899997 99999999999 6689999999976543

>d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Caffeoyl-CoA O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=90.30  E-value=0.44  Score=37.98  Aligned_cols=104  Identities=13%  Similarity=0.084  Sum_probs=67.5

Q ss_pred             HcCCCCCcEEEEEcCCCcHHHHHHHHHHHhC-CCEEEEEeCCcchHHHHHh----cCCcEEEEcCCchhHHHHHHHHh--
Q psy1959         156 HAKLKEKQTVLVTAAGGGLGLAAVDMATKIY-KAKVIGVCNSEDKTDLIRQ----KGAWAALTFTNEKSLVNKVLEVS--  228 (296)
Q Consensus       156 ~~~~~~g~~vlI~Ga~g~vG~aa~~la~~~~-g~~Vi~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~~~i~~~~--  228 (296)
                      ..+....++||=+|  ..+|+.++.+|+... +.+|+.++.+++..+.+++    .|....+.... .+..+.+.++.  
T Consensus        54 L~~~~~~k~iLEiG--T~~GyStl~la~al~~~g~v~tie~~~~~~~~A~~~~~~~g~~~~i~~~~-g~a~~~L~~l~~~  130 (227)
T d1susa1          54 LLKLINAKNTMEIG--VYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFRE-GPALPVLDEMIKD  130 (227)
T ss_dssp             HHHHHTCCEEEEEC--CGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEE-SCHHHHHHHHHHC
T ss_pred             HHHhcCCCcEEEec--chhhhhHHHHHhhCCCCcEEEEEeccchhHHHHHHHHHHhccccceeeee-hHHHHHHHHHHhc
Confidence            34445668999998  677888888884332 5799999999988777765    35543222221 23333444432  


Q ss_pred             --CCCcccEEEECCCC----ccHHHHHHHhhccCceEEeec
Q psy1959         229 --GGKYANVVFEAVGG----EDKTDLIRQKGAWAALTFTNE  263 (296)
Q Consensus       229 --~~~g~d~vld~~g~----~~~~~~~~~lg~~~g~~~~~~  263 (296)
                        ....+|++|--...    ..+..+++++ +++|.+.++.
T Consensus       131 ~~~~~~fD~iFiDa~k~~y~~~~e~~~~ll-~~gGiii~DN  170 (227)
T d1susa1         131 EKNHGSYDFIFVDADKDNYLNYHKRLIDLV-KVGGVIGYDN  170 (227)
T ss_dssp             GGGTTCBSEEEECSCSTTHHHHHHHHHHHB-CTTCCEEEET
T ss_pred             cccCCceeEEEeccchhhhHHHHHHHHhhc-CCCcEEEEcc
Confidence              23469977754332    3677889989 9999886653

>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.98  E-value=0.26  Score=38.20  Aligned_cols=40  Identities=23%  Similarity=0.212  Sum_probs=32.9

Q ss_pred             cEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHH
Q psy1959         163 QTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIR  204 (296)
Q Consensus       163 ~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~  204 (296)
                      ++|.|.|+ |.+|...++++ ...|.+|++.+.+++.++.++
T Consensus         5 kkvaViGa-G~mG~~iA~~~-a~~G~~V~l~D~~~~~l~~a~   44 (192)
T d1f0ya2           5 KHVTVIGG-GLMGAGIAQVA-AATGHTVVLVDQTEDILAKSK   44 (192)
T ss_dssp             CEEEEECC-SHHHHHHHHHH-HHTTCEEEEECSCHHHHHHHH
T ss_pred             EEEEEECc-CHHHHHHHHHH-HhCCCcEEEEECChHHHHHHH
Confidence            58999997 99998877777 457999999999988665543

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=89.66  E-value=0.33  Score=34.51  Aligned_cols=67  Identities=18%  Similarity=0.204  Sum_probs=46.3

Q ss_pred             CCCCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCcEEEEcCCchhHHHHHHHHhCCCcccEEEE
Q psy1959         159 LKEKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNKVLEVSGGKYANVVFE  238 (296)
Q Consensus       159 ~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~g~d~vld  238 (296)
                      ++++++++|.|+ |.+|.-++..+ +..|.+|.++.++++-+..           .-+ ....+.+.+....+|+++.++
T Consensus        27 ~~~~~~vvIIGg-G~iG~E~A~~l-~~~g~~Vtli~~~~~~l~~-----------~~~-~~~~~~~~~~l~~~GV~i~~~   92 (121)
T d1d7ya2          27 LRPQSRLLIVGG-GVIGLELAATA-RTAGVHVSLVETQPRLMSR-----------AAP-ATLADFVARYHAAQGVDLRFE   92 (121)
T ss_dssp             CCTTCEEEEECC-SHHHHHHHHHH-HHTTCEEEEEESSSSTTTT-----------TSC-HHHHHHHHHHHHTTTCEEEES
T ss_pred             hhcCCeEEEECc-chhHHHHHHHh-hcccceEEEEeeccccccc-----------cCC-HHHHHHHHHHHHHCCcEEEeC
Confidence            457799999997 99999888888 4579999999987653210           011 455555555555567777665


Q ss_pred             C
Q psy1959         239 A  239 (296)
Q Consensus       239 ~  239 (296)
                      .
T Consensus        93 ~   93 (121)
T d1d7ya2          93 R   93 (121)
T ss_dssp             C
T ss_pred             C
Confidence            4

>d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: COMT domain-containing protein 1, COMTD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.65  E-value=1.4  Score=34.51  Aligned_cols=104  Identities=13%  Similarity=0.052  Sum_probs=66.3

Q ss_pred             HHcCCCCCcEEEEEcCCCcHHHHHHHHHHHhC--CCEEEEEeCCcchHHHHHh----cCCcEEEEcCCchhHHHHHHHH-
Q psy1959         155 RHAKLKEKQTVLVTAAGGGLGLAAVDMATKIY--KAKVIGVCNSEDKTDLIRQ----KGAWAALTFTNEKSLVNKVLEV-  227 (296)
Q Consensus       155 ~~~~~~~g~~vlI~Ga~g~vG~aa~~la~~~~--g~~Vi~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~~~i~~~-  227 (296)
                      ...+....++||=+|  ...|+.++.+| ...  +.+|+.++.+++..+.+++    .|....+.... .+..+.+.+. 
T Consensus        53 ~L~~~~~~k~vLEiG--t~~GyStl~~a-~al~~~g~i~tie~~~~~~~~A~~~~~~ag~~~~i~~~~-Gda~e~l~~~~  128 (219)
T d2avda1          53 NLARLIQAKKALDLG--TFTGYSALALA-LALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRL-KPALETLDELL  128 (219)
T ss_dssp             HHHHHTTCCEEEEEC--CTTSHHHHHHH-TTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEE-SCHHHHHHHHH
T ss_pred             HHHHccCCCeEEEEe--chhhHHHHHHH-HhCCCCceEEEEeechhHHHHHHHHHHhcCccceEEEEE-eehhhcchhhh
Confidence            344556678999998  56688888888 443  5799999999988776654    35433222211 2233333332 


Q ss_pred             --hCCCcccEEEECCCC----ccHHHHHHHhhccCceEEeec
Q psy1959         228 --SGGKYANVVFEAVGG----EDKTDLIRQKGAWAALTFTNE  263 (296)
Q Consensus       228 --~~~~g~d~vld~~g~----~~~~~~~~~lg~~~g~~~~~~  263 (296)
                        .....+|++|--..-    ..++.+++.| ++||.+.++.
T Consensus       129 ~~~~~~~fD~ifiD~dk~~y~~~~~~~~~lL-~~GGvii~Dn  169 (219)
T d2avda1         129 AAGEAGTFDVAVVDADKENCSAYYERCLQLL-RPGGILAVLR  169 (219)
T ss_dssp             HTTCTTCEEEEEECSCSTTHHHHHHHHHHHE-EEEEEEEEEC
T ss_pred             hhcccCCccEEEEeCCHHHHHHHHHHHHHHh-cCCcEEEEeC
Confidence              223468877765543    2477889989 8999886643

>d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Precorrin-6Y methyltransferase (CbiT)
domain: Precorrin-6Y methyltransferase (CbiT)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=89.56  E-value=0.48  Score=36.12  Aligned_cols=98  Identities=7%  Similarity=-0.002  Sum_probs=62.6

Q ss_pred             HHcCCCCCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHh----cCCc-EEEEcCCchhHHHHHHHHhC
Q psy1959         155 RHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQ----KGAW-AALTFTNEKSLVNKVLEVSG  229 (296)
Q Consensus       155 ~~~~~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~----~g~~-~~~~~~~~~~~~~~i~~~~~  229 (296)
                      ...++++|++||=.|+  |.|..++.+| + .+.+|+.++.+++..+.+++    +|.. .+....  .+..+..   ..
T Consensus        27 ~~l~~~~g~~VLDiGc--GsG~~s~~lA-~-~~~~V~avD~~~~~l~~a~~n~~~~gl~~~v~~~~--gda~~~~---~~   97 (186)
T d1l3ia_          27 CLAEPGKNDVAVDVGC--GTGGVTLELA-G-RVRRVYAIDRNPEAISTTEMNLQRHGLGDNVTLME--GDAPEAL---CK   97 (186)
T ss_dssp             HHHCCCTTCEEEEESC--TTSHHHHHHH-T-TSSEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEE--SCHHHHH---TT
T ss_pred             HhcCCCCCCEEEEEEC--CeEccccccc-c-cceEEEEecCCHHHHHHHHHHHHHcCCCcceEEEE--Cchhhcc---cc
Confidence            4568899999988885  3356667778 4 36799999999988777754    4542 221111  2222222   23


Q ss_pred             CCcccEEEECCCCc----cHHHHHHHhhccCceEEee
Q psy1959         230 GKYANVVFEAVGGE----DKTDLIRQKGAWAALTFTN  262 (296)
Q Consensus       230 ~~g~d~vld~~g~~----~~~~~~~~lg~~~g~~~~~  262 (296)
                      ...+|.++..-...    .+..+.+.| +++|.+.+.
T Consensus        98 ~~~~D~v~~~~~~~~~~~~~~~~~~~L-kpgG~lvi~  133 (186)
T d1l3ia_          98 IPDIDIAVVGGSGGELQEILRIIKDKL-KPGGRIIVT  133 (186)
T ss_dssp             SCCEEEEEESCCTTCHHHHHHHHHHTE-EEEEEEEEE
T ss_pred             cCCcCEEEEeCccccchHHHHHHHHHh-CcCCEEEEE
Confidence            45789888765432    466667777 788877543

>d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Ketopantoate reductase PanE
species: Escherichia coli [TaxId: 562]

Probab=89.49  E-value=0.093  Score=39.19  Aligned_cols=77  Identities=13%  Similarity=0.089  Sum_probs=48.4

Q ss_pred             EEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCc--EE---EEcCCchhHHHHHHHHhCCCcccEEEE
Q psy1959         164 TVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAW--AA---LTFTNEKSLVNKVLEVSGGKYANVVFE  238 (296)
Q Consensus       164 ~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~--~~---~~~~~~~~~~~~i~~~~~~~g~d~vld  238 (296)
                      +|+|+|+ |.+|.+....+.+ .|.+|.++++++++.......+..  ..   +....    .+.+      ..+|++|-
T Consensus         2 kI~IiGa-G~iG~~~a~~L~~-~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~------~~~D~iii   69 (167)
T d1ks9a2           2 KITVLGC-GALGQLWLTALCK-QGHEVQGWLRVPQPYCSVNLVETDGSIFNESLTAND----PDFL------ATSDLLLV   69 (167)
T ss_dssp             EEEEECC-SHHHHHHHHHHHH-TTCEEEEECSSCCSEEEEEEECTTSCEEEEEEEESC----HHHH------HTCSEEEE
T ss_pred             EEEEECc-CHHHHHHHHHHHH-CCCceEEEEcCHHHhhhhccccCCccccccccccch----hhhh------cccceEEE
Confidence            6899998 9999886666524 699999999987755433322211  11   11111    1111      26899999


Q ss_pred             CCCCccHHHHHHHh
Q psy1959         239 AVGGEDKTDLIRQK  252 (296)
Q Consensus       239 ~~g~~~~~~~~~~l  252 (296)
                      ++-......+++.+
T Consensus        70 ~vka~~~~~~~~~l   83 (167)
T d1ks9a2          70 TLKAWQVSDAVKSL   83 (167)
T ss_dssp             CSCGGGHHHHHHHH
T ss_pred             eecccchHHHHHhh
Confidence            99886666656555

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=89.27  E-value=0.16  Score=35.96  Aligned_cols=35  Identities=20%  Similarity=0.081  Sum_probs=29.8

Q ss_pred             CcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcc
Q psy1959         162 KQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSED  198 (296)
Q Consensus       162 g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~  198 (296)
                      .++++|.|+ |.+|.-+++.+ +.+|.+|.++.+.+.
T Consensus        21 p~~vvIiGg-G~ig~E~A~~l-~~~G~~Vtlve~~~~   55 (116)
T d1gesa2          21 PERVAVVGA-GYIGVELGGVI-NGLGAKTHLFEMFDA   55 (116)
T ss_dssp             CSEEEEECC-SHHHHHHHHHH-HHTTCEEEEECSSSS
T ss_pred             CCEEEEECC-ChhhHHHHHHh-hccccEEEEEeecch
Confidence            478999997 99999988888 568999999998654

>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=89.23  E-value=0.29  Score=34.65  Aligned_cols=36  Identities=19%  Similarity=0.094  Sum_probs=30.4

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcc
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSED  198 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~  198 (296)
                      ..++++|.|+ |.+|.=.++.+ ..+|.+|.++.+.+.
T Consensus        21 ~p~~i~IiG~-G~ig~E~A~~l-~~~G~~Vtiv~~~~~   56 (119)
T d3lada2          21 VPGKLGVIGA-GVIGLELGSVW-ARLGAEVTVLEAMDK   56 (119)
T ss_dssp             CCSEEEEECC-SHHHHHHHHHH-HHTTCEEEEEESSSS
T ss_pred             CCCeEEEECC-ChHHHHHHHHH-HHcCCceEEEEeecc
Confidence            3588999997 99999988888 568999999997654

>d2czca2 c.2.1.3 (A:1-139,A:302-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=89.08  E-value=1.8  Score=32.63  Aligned_cols=93  Identities=12%  Similarity=0.086  Sum_probs=55.7

Q ss_pred             EEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeC--CcchHHHHHhcCCcEEEEcCCchhHHHHHHHHh-C--------CCc
Q psy1959         164 TVLVTAAGGGLGLAAVDMATKIYKAKVIGVCN--SEDKTDLIRQKGAWAALTFTNEKSLVNKVLEVS-G--------GKY  232 (296)
Q Consensus       164 ~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~--~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~-~--------~~g  232 (296)
                      +|.|.|- |-+|...++.+......+++.+..  +......+...+.+......+   ......+.. .        ..+
T Consensus         4 rIaINGf-GRIGR~v~Ral~~~~dieiVaINd~~~~~~~~~l~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~   79 (172)
T d2czca2           4 KVGVNGY-GTIGKRVAYAVTKQDDMELIGITKTKPDFEAYRAKELGIPVYAASEE---FIPRFEKEGFEVAGTLNDLLEK   79 (172)
T ss_dssp             EEEEECC-SHHHHHHHHHHHTCTTEEEEEEEESSCSHHHHHHHHTTCCEEESSGG---GHHHHHHHTCCCSCBHHHHHTT
T ss_pred             EEEEECC-CHHHHHHHHHHHhCCCceEEEEecCCChHHHHHhhhcCceeeccccc---ceeeecccCccccchhhhhhcc
Confidence            6899996 999999988884444567776653  233445666666544332111   111111110 0        137


Q ss_pred             ccEEEECCCC-ccHHHHHHHhhccCceEEe
Q psy1959         233 ANVVFEAVGG-EDKTDLIRQKGAWAALTFT  261 (296)
Q Consensus       233 ~d~vld~~g~-~~~~~~~~~lg~~~g~~~~  261 (296)
                      +|+|+||+|. ...+.+-..+ ..|....+
T Consensus        80 vDvViEcTG~f~~~~~~~~hl-~~G~k~Vi  108 (172)
T d2czca2          80 VDIIVDATPGGIGAKNKPLYE-KAGVKAIF  108 (172)
T ss_dssp             CSEEEECCSTTHHHHHHHHHH-HHTCEEEE
T ss_pred             CCEEEECCCCCCCHHHHHHHH-HcCCCEEE
Confidence            9999999998 5677777777 55544433

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=89.05  E-value=0.24  Score=39.67  Aligned_cols=34  Identities=32%  Similarity=0.191  Sum_probs=28.7

Q ss_pred             CcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCc
Q psy1959         162 KQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSE  197 (296)
Q Consensus       162 g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~  197 (296)
                      |++|+|+|+ |.-|+.++..+ ...|.+|.+++.++
T Consensus         1 ~KkV~IIGa-G~aGL~aA~~L-a~~G~~V~vlE~~~   34 (373)
T d1seza1           1 AKRVAVIGA-GVSGLAAAYKL-KIHGLNVTVFEAEG   34 (373)
T ss_dssp             CCEEEEECC-SHHHHHHHHHH-HTTSCEEEEECSSS
T ss_pred             CCEEEEECc-CHHHHHHHHHH-HhCCCCEEEEeCCC
Confidence            578999997 99999988888 44799999998654

>d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=88.98  E-value=0.15  Score=36.60  Aligned_cols=37  Identities=19%  Similarity=0.126  Sum_probs=31.5

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcch
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDK  199 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~  199 (296)
                      ..++++|.|+ |-+|+=++++. ..+|.+|.++.++++-
T Consensus        24 ~p~~~viiG~-G~iglE~A~~~-~~~G~~Vtvi~~~~~~   60 (123)
T d1dxla2          24 IPKKLVVIGA-GYIGLEMGSVW-GRIGSEVTVVEFASEI   60 (123)
T ss_dssp             CCSEEEESCC-SHHHHHHHHHH-HHHTCEEEEECSSSSS
T ss_pred             cCCeEEEEcc-chHHHHHHHHH-HhcCCeEEEEEEcccc
Confidence            4579999997 99999999999 5689999999987654

>d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, middle domain
species: Escherichia coli [TaxId: 562]

Probab=88.90  E-value=0.35  Score=37.07  Aligned_cols=38  Identities=24%  Similarity=0.144  Sum_probs=32.5

Q ss_pred             CCCCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcc
Q psy1959         159 LKEKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSED  198 (296)
Q Consensus       159 ~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~  198 (296)
                      ...+++|+|.|+ |+-|+.++..+ ...|.+|++.++.++
T Consensus        40 ~~~~k~V~IIGa-GPAGL~AA~~l-a~~G~~Vtl~E~~~~   77 (179)
T d1ps9a3          40 AVQKKNLAVVGA-GPAGLAFAINA-AARGHQVTLFDAHSE   77 (179)
T ss_dssp             CSSCCEEEEECC-SHHHHHHHHHH-HTTTCEEEEEESSSS
T ss_pred             CCCCcEEEEECc-cHHHHHHHHHH-HhhccceEEEeccCc
Confidence            456789999997 99999999999 568999999997654

>d1ek6a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.88  E-value=0.4  Score=40.04  Aligned_cols=32  Identities=25%  Similarity=0.125  Sum_probs=27.7

Q ss_pred             cEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeC
Q psy1959         163 QTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCN  195 (296)
Q Consensus       163 ~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~  195 (296)
                      ++|||+|++|-+|...+..+ ...|.+|+++++
T Consensus         3 kKILITG~tGfIGs~lv~~L-l~~g~~V~~ld~   34 (346)
T d1ek6a_           3 EKVLVTGGAGYIGSHTVLEL-LEAGYLPVVIDN   34 (346)
T ss_dssp             SEEEEETTTSHHHHHHHHHH-HHTTCCEEEEEC
T ss_pred             CeEEEECCCcHHHHHHHHHH-HHCcCEEEEEEC
Confidence            68999999999999988888 457999999863

>d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

Probab=88.81  E-value=0.94  Score=30.68  Aligned_cols=72  Identities=17%  Similarity=0.215  Sum_probs=50.5

Q ss_pred             CCCCCcEEEEEcCCCcHHHHH-HHHHHHhCCCEEEEEeCCcc-hHHHHHhcCCcEEEEcCCchhHHHHHHHHhCCCcccE
Q psy1959         158 KLKEKQTVLVTAAGGGLGLAA-VDMATKIYKAKVIGVCNSED-KTDLIRQKGAWAALTFTNEKSLVNKVLEVSGGKYANV  235 (296)
Q Consensus       158 ~~~~g~~vlI~Ga~g~vG~aa-~~la~~~~g~~Vi~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~g~d~  235 (296)
                      .++..+++.+.|. |++|..+ ++++ +..|+.|...|.... ..+.+.+.|+.....+.. ...          .++|+
T Consensus         4 ~~~~~~~ihfiGi-gG~GMs~LA~~L-~~~G~~VsGSD~~~~~~~~~L~~~Gi~v~~g~~~-~~i----------~~~d~   70 (96)
T d1p3da1           4 EMRRVQQIHFIGI-GGAGMSGIAEIL-LNEGYQISGSDIADGVVTQRLAQAGAKIYIGHAE-EHI----------EGASV   70 (96)
T ss_dssp             CCTTCCEEEEETT-TSTTHHHHHHHH-HHHTCEEEEEESCCSHHHHHHHHTTCEEEESCCG-GGG----------TTCSE
T ss_pred             cchhCCEEEEEEE-CHHHHHHHHHHH-HhCCCEEEEEeCCCChhhhHHHHCCCeEEECCcc-ccC----------CCCCE
Confidence            4567789999997 8889776 6777 568999999998644 456777888854433322 111          26788


Q ss_pred             EEECCCC
Q psy1959         236 VFEAVGG  242 (296)
Q Consensus       236 vld~~g~  242 (296)
                      ++=+.+-
T Consensus        71 vV~S~AI   77 (96)
T d1p3da1          71 VVVSSAI   77 (96)
T ss_dssp             EEECTTS
T ss_pred             EEECCCc
Confidence            8777664

>d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Guanidinoacetate methyltransferase
domain: Guanidinoacetate methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.72  E-value=0.13  Score=41.00  Aligned_cols=94  Identities=10%  Similarity=-0.060  Sum_probs=59.2

Q ss_pred             CCCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcC----CcEEEEcCCchhHHHHHHHHhCCCcccE
Q psy1959         160 KEKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKG----AWAALTFTNEKSLVNKVLEVSGGKYANV  235 (296)
Q Consensus       160 ~~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g----~~~~~~~~~~~~~~~~i~~~~~~~g~d~  235 (296)
                      .+|.+||=+|+  |.|..+..++ +..+.+|++++.+++-.+.+++..    ....+...   +....... .....+|.
T Consensus        52 ~~g~~VLdIGc--G~G~~a~~~a-~~~~~~v~~id~s~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~~~-~~~~~fD~  124 (229)
T d1zx0a1          52 SKGGRVLEVGF--GMAIAASKVQ-EAPIDEHWIIECNDGVFQRLRDWAPRQTHKVIPLKG---LWEDVAPT-LPDGHFDG  124 (229)
T ss_dssp             TTCEEEEEECC--TTSHHHHHHH-TSCEEEEEEEECCHHHHHHHHHHGGGCSSEEEEEES---CHHHHGGG-SCTTCEEE
T ss_pred             cCCCeEEEeec--cchHHHHHHH-HcCCCeEEEeCCCHHHHHHHHHHhhhcccccccccc---cccccccc-cccccccc
Confidence            57899999985  4577888888 555679999999998888887642    21112221   22222222 23346887


Q ss_pred             E-EECCCC-c----------cHHHHHHHhhccCceEEe
Q psy1959         236 V-FEAVGG-E----------DKTDLIRQKGAWAALTFT  261 (296)
Q Consensus       236 v-ld~~g~-~----------~~~~~~~~lg~~~g~~~~  261 (296)
                      + +|.+.. .          .+..+.+.| ++||.+.+
T Consensus       125 i~fD~~~~~~~~~~~~~~~~~~~~~~r~L-kpGG~~~~  161 (229)
T d1zx0a1         125 ILYDTYPLSEETWHTHQFNFIKNHAFRLL-KPGGVLTY  161 (229)
T ss_dssp             EEECCCCCBGGGTTTHHHHHHHHTHHHHE-EEEEEEEE
T ss_pred             eeecccccccccccccCHHHHHHHHHHHc-CCCcEEEE
Confidence            6 465443 1          245577778 89998854

>d1vm6a3 c.2.1.3 (A:1-96,A:183-214) Dihydrodipicolinate reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=88.57  E-value=1  Score=32.28  Aligned_cols=84  Identities=11%  Similarity=0.137  Sum_probs=55.0

Q ss_pred             EEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCcEEEEcCCchhHHHHHHHHhCCCcccEEEECCCC-
Q psy1959         164 TVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNKVLEVSGGKYANVVFEAVGG-  242 (296)
Q Consensus       164 ~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~g~d~vld~~g~-  242 (296)
                      +|.|+|++|-.|++..+++ ...+.+++.......... +  ..+|.+++.+.+....+.++... ..+..+|+-++|- 
T Consensus         2 ki~i~G~~GrMG~~i~~~~-~~~~~~l~~~id~~~~~~-~--~~~DVvIDFS~p~~~~~~l~~~~-~~~~p~ViGTTG~~   76 (128)
T d1vm6a3           2 KYGIVGYSGRMGQEIQKVF-SEKGHELVLKVDVNGVEE-L--DSPDVVIDFSSPEALPKTVDLCK-KYRAGLVLGTTALK   76 (128)
T ss_dssp             EEEEETTTSHHHHHHHHHH-HHTTCEEEEEEETTEEEE-C--SCCSEEEECSCGGGHHHHHHHHH-HHTCEEEECCCSCC
T ss_pred             EEEEECCCCHHHHHHHHHH-hcCCCeEEEEECCCcHHH-h--ccCCEEEEecCHHHHHHHHHHHH-hcCCCEEEEcCCCC
Confidence            5899999999999999998 557887765542222111 1  25778888887444444444433 3477899999996 


Q ss_pred             ccHHHHHHHh
Q psy1959         243 EDKTDLIRQK  252 (296)
Q Consensus       243 ~~~~~~~~~l  252 (296)
                      +.-...++.+
T Consensus        77 ~~~~~~i~~~   86 (128)
T d1vm6a3          77 EEHLQMLREL   86 (128)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            4444455555

>d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 2
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=88.51  E-value=0.18  Score=38.35  Aligned_cols=36  Identities=8%  Similarity=0.044  Sum_probs=29.4

Q ss_pred             CcEEEEEcCCCcHHHHHHHHHHHhCCC-EEEEEeCCcch
Q psy1959         162 KQTVLVTAAGGGLGLAAVDMATKIYKA-KVIGVCNSEDK  199 (296)
Q Consensus       162 g~~vlI~Ga~g~vG~aa~~la~~~~g~-~Vi~~~~~~~~  199 (296)
                      +++|+|.|+ |+.|+.++..+ ...|+ .|.++++++.-
T Consensus         4 ~~kVaIIGa-GpaGl~aA~~l-~~~G~~~V~v~E~~~~~   40 (196)
T d1gtea4           4 SAKIALLGA-GPASISCASFL-ARLGYSDITIFEKQEYV   40 (196)
T ss_dssp             GCCEEEECC-SHHHHHHHHHH-HHTTCCCEEEEESSSSC
T ss_pred             CCEEEEECC-hHHHHHHHHHH-HHCCCCeEEEEEecCcc
Confidence            578999998 99999988888 45788 58888876553

>d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Probable methyltransferase Rv2118c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=87.89  E-value=1.8  Score=34.97  Aligned_cols=97  Identities=13%  Similarity=0.101  Sum_probs=64.7

Q ss_pred             HHcCCCCCcEEEEEcCCCcHHHHHHHHHHHhC-CCEEEEEeCCcchHHHHHhc------C-Cc-EEEEcCCchhHHHHHH
Q psy1959         155 RHAKLKEKQTVLVTAAGGGLGLAAVDMATKIY-KAKVIGVCNSEDKTDLIRQK------G-AW-AALTFTNEKSLVNKVL  225 (296)
Q Consensus       155 ~~~~~~~g~~vlI~Ga~g~vG~aa~~la~~~~-g~~Vi~~~~~~~~~~~~~~~------g-~~-~~~~~~~~~~~~~~i~  225 (296)
                      ...+++||++||=.|.  |.|.++..+|+... ..+|+.++.+++..+.+++.      + .+ ..+...+   ..+   
T Consensus        90 ~~l~i~PG~~VLE~G~--GsG~lt~~La~~vgp~G~V~~~d~~~~~~~~Ar~n~~~~~~~~~~nv~~~~~d---~~~---  161 (264)
T d1i9ga_          90 HEGDIFPGARVLEAGA--GSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSD---LAD---  161 (264)
T ss_dssp             HHTTCCTTCEEEEECC--TTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSC---GGG---
T ss_pred             HHhCCCCCCEEEecCc--CCcHHHHHHHHhhCCCcEEEEecCCHHHHHHHHHhhhhhccCCCceEEEEecc---ccc---
Confidence            6789999999998774  44888888884432 45999999999988877641      1 12 2222222   110   


Q ss_pred             HHhCCCcccEEEECCCC--ccHHHHHHHhhccCceEE
Q psy1959         226 EVSGGKYANVVFEAVGG--EDKTDLIRQKGAWAALTF  260 (296)
Q Consensus       226 ~~~~~~g~d~vld~~g~--~~~~~~~~~lg~~~g~~~  260 (296)
                      .-.....+|.||--...  +.+..+.+.| +++|.+.
T Consensus       162 ~~~~~~~fDaV~ldlp~P~~~l~~~~~~L-kpGG~lv  197 (264)
T d1i9ga_         162 SELPDGSVDRAVLDMLAPWEVLDAVSRLL-VAGGVLM  197 (264)
T ss_dssp             CCCCTTCEEEEEEESSCGGGGHHHHHHHE-EEEEEEE
T ss_pred             ccccCCCcceEEEecCCHHHHHHHHHhcc-CCCCEEE
Confidence            01123468977765665  5788899999 8888773

>d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Streptococcus pyogenes [TaxId: 1314]

Probab=87.87  E-value=0.75  Score=33.84  Aligned_cols=75  Identities=13%  Similarity=0.070  Sum_probs=47.3

Q ss_pred             EEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHH-hcCCcEEEEcCCchhHHHHHHHHhCCCcccEEEECCCC
Q psy1959         164 TVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIR-QKGAWAALTFTNEKSLVNKVLEVSGGKYANVVFEAVGG  242 (296)
Q Consensus       164 ~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~i~~~~~~~g~d~vld~~g~  242 (296)
                      +|.+.|+ |.+|.+.+.-. ...+.++++.+++.++.+.+. ++|....      .+..+.+      +..|++|=|+--
T Consensus         2 kIg~IG~-G~mG~al~~~l-~~~~~~i~v~~r~~~~~~~l~~~~g~~~~------~~~~~~~------~~~dvIilavkp   67 (152)
T d2ahra2           2 KIGIIGV-GKMASAIIKGL-KQTPHELIISGSSLERSKEIAEQLALPYA------MSHQDLI------DQVDLVILGIKP   67 (152)
T ss_dssp             EEEEECC-SHHHHHHHHHH-TTSSCEEEEECSSHHHHHHHHHHHTCCBC------SSHHHHH------HTCSEEEECSCG
T ss_pred             EEEEEec-cHHHHHHHHHH-HhCCCeEEEEcChHHhHHhhccccceeee------chhhhhh------hccceeeeecch
Confidence            5788997 99999877755 346889999999988887764 4564321      1111111      145666666654


Q ss_pred             ccHHHHHHHh
Q psy1959         243 EDKTDLIRQK  252 (296)
Q Consensus       243 ~~~~~~~~~l  252 (296)
                      ..+...++.+
T Consensus        68 ~~~~~vl~~l   77 (152)
T d2ahra2          68 QLFETVLKPL   77 (152)
T ss_dssp             GGHHHHHTTS
T ss_pred             HhHHHHhhhc
Confidence            4555555555

>d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA1
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=87.64  E-value=0.36  Score=39.88  Aligned_cols=96  Identities=14%  Similarity=0.143  Sum_probs=64.2

Q ss_pred             HHHHcCCCCCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhc----CCcE--EEEcCCchhHHHHHHH
Q psy1959         153 FSRHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQK----GAWA--ALTFTNEKSLVNKVLE  226 (296)
Q Consensus       153 l~~~~~~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~----g~~~--~~~~~~~~~~~~~i~~  226 (296)
                      +-++.++++|++||=+|+  |.|..++.+|+ ..|++|+.++.+++..+.+++.    |...  .+...+   +    ++
T Consensus        54 ~~~~l~l~~G~~VLDiGC--G~G~~a~~~a~-~~g~~v~git~s~~Q~~~a~~~~~~~g~~~~v~~~~~d---~----~~  123 (285)
T d1kpga_          54 ALGKLGLQPGMTLLDVGC--GWGATMMRAVE-KYDVNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAG---W----EQ  123 (285)
T ss_dssp             HHTTTTCCTTCEEEEETC--TTSHHHHHHHH-HHCCEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESC---G----GG
T ss_pred             HHHHcCCCCCCEEEEecC--cchHHHHHHHh-cCCcceEEEeccHHHHHHHHHHHHhhhhhhhhHHHHhh---h----hc
Confidence            447889999999999996  45788888894 5699999999999988777553    3221  122222   1    11


Q ss_pred             HhCCCcccEEEE-----CCCCc----cHHHHHHHhhccCceEEe
Q psy1959         227 VSGGKYANVVFE-----AVGGE----DKTDLIRQKGAWAALTFT  261 (296)
Q Consensus       227 ~~~~~g~d~vld-----~~g~~----~~~~~~~~lg~~~g~~~~  261 (296)
                      .  ...+|.++.     .++..    .+..+.+.| +++|++.+
T Consensus       124 ~--~~~fD~i~si~~~eh~~~~~~~~~~~~~~r~L-kpgG~~~l  164 (285)
T d1kpga_         124 F--DEPVDRIVSIGAFEHFGHERYDAFFSLAHRLL-PADGVMLL  164 (285)
T ss_dssp             C--CCCCSEEEEESCGGGTCTTTHHHHHHHHHHHS-CTTCEEEE
T ss_pred             c--cccccceeeehhhhhcCchhHHHHHHHHHhhc-CCCCcEEE
Confidence            1  236777665     33322    366677788 88988854

>d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Putative sarcosine dimethylglycine methyltransferase
species: Red algae (Galdieria sulphuraria) [TaxId: 130081]

Probab=87.53  E-value=0.98  Score=36.57  Aligned_cols=100  Identities=9%  Similarity=0.017  Sum_probs=64.6

Q ss_pred             HHHHcCCCCCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhc----CCc--EEEEcCCchhHHHHHHH
Q psy1959         153 FSRHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQK----GAW--AALTFTNEKSLVNKVLE  226 (296)
Q Consensus       153 l~~~~~~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~----g~~--~~~~~~~~~~~~~~i~~  226 (296)
                      +.....++++.+||=+|+  |.|..+..+++ ..+++|++++.++...+.+++.    |..  ..+...+..++      
T Consensus        59 l~~~~~l~~~~~vLDiGc--G~G~~~~~la~-~~~~~v~gvD~s~~~i~~a~~~~~~~gl~~~v~~~~~d~~~l------  129 (282)
T d2o57a1          59 LAMTGVLQRQAKGLDLGA--GYGGAARFLVR-KFGVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEI------  129 (282)
T ss_dssp             HHHTTCCCTTCEEEEETC--TTSHHHHHHHH-HHCCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSC------
T ss_pred             HHHhcCCCCCCEEEEeCC--CCcHHHhhhhc-cCCcEEEEEeccchhhhhhhcccccccccccccccccccccc------
Confidence            445678999999999986  34677778884 4689999999998877666543    432  22222221111      


Q ss_pred             HhCCCcccEEEECCC-----C--ccHHHHHHHhhccCceEEee
Q psy1959         227 VSGGKYANVVFEAVG-----G--EDKTDLIRQKGAWAALTFTN  262 (296)
Q Consensus       227 ~~~~~g~d~vld~~g-----~--~~~~~~~~~lg~~~g~~~~~  262 (296)
                      -.....+|+|+..-.     +  ..+..+.+.| +++|.+.+.
T Consensus       130 ~~~~~sfD~V~~~~~l~h~~d~~~~l~~~~~~L-kpgG~l~~~  171 (282)
T d2o57a1         130 PCEDNSYDFIWSQDAFLHSPDKLKVFQECARVL-KPRGVMAIT  171 (282)
T ss_dssp             SSCTTCEEEEEEESCGGGCSCHHHHHHHHHHHE-EEEEEEEEE
T ss_pred             cccccccchhhccchhhhccCHHHHHHHHHHhc-CCCcEEEEE
Confidence            012347999987432     2  2467777888 889987553

>d1ydwa1 c.2.1.3 (A:6-133,A:305-360) Probable oxidoreductase At4g09670 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Probable oxidoreductase At4g09670
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=87.51  E-value=0.81  Score=34.59  Aligned_cols=87  Identities=9%  Similarity=-0.011  Sum_probs=54.5

Q ss_pred             EEEEEcCCCcHHHHHHHHHHHhCCCEEEEE-eCCcchHHHH-HhcCCcE-EEEcCCchhHHHHHHHHhCCCcccEEEECC
Q psy1959         164 TVLVTAAGGGLGLAAVDMATKIYKAKVIGV-CNSEDKTDLI-RQKGAWA-ALTFTNEKSLVNKVLEVSGGKYANVVFEAV  240 (296)
Q Consensus       164 ~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~-~~~~~~~~~~-~~~g~~~-~~~~~~~~~~~~~i~~~~~~~g~d~vld~~  240 (296)
                      ++.|.|. |.+|...++..++..+++++++ ++++++.+.+ ++++... .-.+   .++.+.+.    ...+|+|+-++
T Consensus         3 ki~iIG~-G~~g~~~~~~l~~~~~~~i~ai~d~~~~~~~~~~~~~~~~~~~~~~---~~~~~ll~----~~~iD~v~I~t   74 (184)
T d1ydwa1           3 RIGVMGC-ADIARKVSRAIHLAPNATISGVASRSLEKAKAFATANNYPESTKIH---GSYESLLE----DPEIDALYVPL   74 (184)
T ss_dssp             EEEEESC-CTTHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHHTTCCTTCEEE---SSHHHHHH----CTTCCEEEECC
T ss_pred             EEEEEcC-CHHHHHHHHHHHhCCCCEEEEEEeCCccccccchhccccccceeec---CcHHHhhh----ccccceeeecc
Confidence            5789997 8899888877755457788765 5566655544 4455321 1112   22333332    34789999888


Q ss_pred             CC-ccHHHHHHHhhccCceE
Q psy1959         241 GG-EDKTDLIRQKGAWAALT  259 (296)
Q Consensus       241 g~-~~~~~~~~~lg~~~g~~  259 (296)
                      .. ..++.+..++ ..+-.+
T Consensus        75 p~~~h~~~~~~~l-~~g~~v   93 (184)
T d1ydwa1          75 PTSLHVEWAIKAA-EKGKHI   93 (184)
T ss_dssp             CGGGHHHHHHHHH-TTTCEE
T ss_pred             cchhhcchhhhhh-hcccee
Confidence            87 5788888888 555433

>d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Trypanosome (Leishmania mexicana) [TaxId: 5665]

Probab=87.41  E-value=0.17  Score=39.27  Aligned_cols=86  Identities=12%  Similarity=0.133  Sum_probs=54.8

Q ss_pred             cEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCcEE----EEcCCchhHHHHHHHHhCCCcccEEEE
Q psy1959         163 QTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAA----LTFTNEKSLVNKVLEVSGGKYANVVFE  238 (296)
Q Consensus       163 ~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~~~----~~~~~~~~~~~~i~~~~~~~g~d~vld  238 (296)
                      .+|.|+|+ |..|.+.+..+ ...|-+|...+++++..+.+.+.+....    +...+.-.....+.+..  ++.|+++-
T Consensus         8 ~KI~ViGa-G~wGtAlA~~L-a~~g~~V~l~~r~~~~~~~i~~~~~n~~yl~~~~l~~~i~~t~~l~~a~--~~ad~iii   83 (189)
T d1n1ea2           8 NKAVVFGS-GAFGTALAMVL-SKKCREVCVWHMNEEEVRLVNEKRENVLFLKGVQLASNITFTSDVEKAY--NGAEIILF   83 (189)
T ss_dssp             EEEEEECC-SHHHHHHHHHH-HTTEEEEEEECSCHHHHHHHHHHTBCTTTSTTCBCCTTEEEESCHHHHH--TTCSCEEE
T ss_pred             ceEEEECC-CHHHHHHHHHH-HHcCCeEEEEEecHHHHHHHhhcccccccccccccccccccchhhhhcc--CCCCEEEE
Confidence            46999997 99999988877 4457799999999998888865431100    00000000011122222  26799999


Q ss_pred             CCCCccHHHHHHHh
Q psy1959         239 AVGGEDKTDLIRQK  252 (296)
Q Consensus       239 ~~g~~~~~~~~~~l  252 (296)
                      ++....+...++.+
T Consensus        84 avPs~~~~~~~~~~   97 (189)
T d1n1ea2          84 VIPTQFLRGFFEKS   97 (189)
T ss_dssp             CSCHHHHHHHHHHH
T ss_pred             cCcHHHHHHHHHHH
Confidence            99887777776655

>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

Probab=87.32  E-value=0.39  Score=38.08  Aligned_cols=36  Identities=19%  Similarity=0.061  Sum_probs=29.5

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcc
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSED  198 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~  198 (296)
                      ..++|+|.|+ |..|++++..+++ .|.+|++++++++
T Consensus         3 ~~~kV~IiGa-G~aGl~~A~~L~~-~G~~v~v~Er~~~   38 (265)
T d2voua1           3 TTDRIAVVGG-SISGLTAALMLRD-AGVDVDVYERSPQ   38 (265)
T ss_dssp             CCSEEEEECC-SHHHHHHHHHHHH-TTCEEEEECSSSS
T ss_pred             CCCcEEEECc-CHHHHHHHHHHHH-CCCCEEEEeCCCC
Confidence            3578999998 9999998888744 6999999997543

>d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase RlmA
domain: rRNA methyltransferase RlmA
species: Escherichia coli [TaxId: 562]

Probab=87.24  E-value=1  Score=36.41  Aligned_cols=95  Identities=12%  Similarity=0.074  Sum_probs=64.4

Q ss_pred             CCCCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCcEEEEcCCchhHHHHHHHHhCCCcccEEEE
Q psy1959         159 LKEKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNKVLEVSGGKYANVVFE  238 (296)
Q Consensus       159 ~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~g~d~vld  238 (296)
                      ..++.+||=.|+  |.|..+..+++...+.+++.+|.++.-.+.+++......+...+..++      -.....+|+|+.
T Consensus        82 ~~~~~~iLDiGc--G~G~~~~~l~~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~d~~~l------~~~~~sfD~v~~  153 (268)
T d1p91a_          82 DDKATAVLDIGC--GEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRYPQVTFCVASSHRL------PFSDTSMDAIIR  153 (268)
T ss_dssp             CTTCCEEEEETC--TTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHCTTSEEEECCTTSC------SBCTTCEEEEEE
T ss_pred             CCCCCEEEEeCC--CCcHHHHHHHHHCCCCEEEEecchHhhhhhhhcccccccceeeehhhc------cCCCCCEEEEee
Confidence            456778888886  447777778844347799999999998888876543322221110111      012347999998


Q ss_pred             CCCCccHHHHHHHhhccCceEEee
Q psy1959         239 AVGGEDKTDLIRQKGAWAALTFTN  262 (296)
Q Consensus       239 ~~g~~~~~~~~~~lg~~~g~~~~~  262 (296)
                      ...-..+.+..+.| +++|.+.+.
T Consensus       154 ~~~~~~~~e~~rvL-kpgG~l~~~  176 (268)
T d1p91a_         154 IYAPCKAEELARVV-KPGGWVITA  176 (268)
T ss_dssp             ESCCCCHHHHHHHE-EEEEEEEEE
T ss_pred             cCCHHHHHHHHHHh-CCCcEEEEE
Confidence            76667889999999 999988554

>d1b7go1 c.2.1.3 (O:1-138,O:301-340) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=87.04  E-value=1.5  Score=33.29  Aligned_cols=94  Identities=15%  Similarity=0.157  Sum_probs=52.3

Q ss_pred             EEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCc-c-hHHHHHhcCCcEEEEcCCchhHHH-------HHHHHhCCCccc
Q psy1959         164 TVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSE-D-KTDLIRQKGAWAALTFTNEKSLVN-------KVLEVSGGKYAN  234 (296)
Q Consensus       164 ~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~-~-~~~~~~~~g~~~~~~~~~~~~~~~-------~i~~~~~~~g~d  234 (296)
                      +|.|.|- |-+|+.+++.+......+++++.... . ....+...+.......+....+.+       .+.+..  .++|
T Consensus         3 KVaINGf-GRIGR~v~Ral~~~~dievVaInd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~g~~~~~~--~~vD   79 (178)
T d1b7go1           3 NVAVNGY-GTIGKRVADAIIKQPDMKLVGVAKTSPNYEAFIAHRRGIRIYVPQQSIKKFEESGIPVAGTVEDLI--KTSD   79 (178)
T ss_dssp             EEEEECC-SHHHHHHHHHHHTCTTEEEEEEECSSCSHHHHHHHHTTCCEECCGGGHHHHHTTTCCCCCCHHHHH--HHCS
T ss_pred             EEEEECC-CHHHHHHHHHHHhCCCCEEEEEECCCCcHHHHHhcccCcceeccCccceeccccceecCCchhhhh--hcCC
Confidence            5889995 99999999999544466888775432 2 333333333322221111000000       001111  2689


Q ss_pred             EEEECCCC-ccHHHHHHHhhccCceEEe
Q psy1959         235 VVFEAVGG-EDKTDLIRQKGAWAALTFT  261 (296)
Q Consensus       235 ~vld~~g~-~~~~~~~~~lg~~~g~~~~  261 (296)
                      +|+||+|. ...+.+-..+ ..+-...+
T Consensus        80 iViecTG~f~~~e~a~~hl-~~G~KvIi  106 (178)
T d1b7go1          80 IVVDTTPNGVGAQYKPIYL-QLQRNAIF  106 (178)
T ss_dssp             EEEECCSTTHHHHHHHHHH-HTTCEEEE
T ss_pred             EEEECCCCcCCHHHHHHHH-HcCCEEEE
Confidence            99999998 5666666667 55544444

>d1e6ua_ c.2.1.2 (A:) GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase)
species: Escherichia coli [TaxId: 562]

Probab=87.03  E-value=0.36  Score=39.65  Aligned_cols=33  Identities=15%  Similarity=0.090  Sum_probs=27.6

Q ss_pred             cEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCC
Q psy1959         163 QTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNS  196 (296)
Q Consensus       163 ~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~  196 (296)
                      ++|||+|++|-+|...++.+ ...|..+++++..
T Consensus         3 kkIlITG~tGfiG~~l~~~L-~~~g~~vi~~~~~   35 (315)
T d1e6ua_           3 QRVFIAGHRGMVGSAIRRQL-EQRGDVELVLRTR   35 (315)
T ss_dssp             EEEEEETTTSHHHHHHHHHH-TTCTTEEEECCCT
T ss_pred             CEEEEEcCCcHHHHHHHHHH-HHCcCEEEEecCc
Confidence            58999999999999999888 5578888877644

>d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=86.87  E-value=0.34  Score=34.50  Aligned_cols=63  Identities=17%  Similarity=0.095  Sum_probs=41.8

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCcEEEEcCCchhHHHHHHHHhCCCcccEEEEC
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNKVLEVSGGKYANVVFEA  239 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~g~d~vld~  239 (296)
                      ..++++|.|+ |.+|.=.++.+ ..+|.+|.++.++ .   .+..  .       + .+..+.+.+....+|+++..++
T Consensus        19 ~P~~vvIIGg-G~iG~E~A~~l-~~lG~~Vtii~~~-~---~l~~--~-------D-~~~~~~l~~~l~~~Gv~i~~~~   81 (122)
T d1h6va2          19 CPGKTLVVGA-SYVALECAGFL-AGIGLDVTVMVRS-I---LLRG--F-------D-QDMANKIGEHMEEHGIKFIRQF   81 (122)
T ss_dssp             CCCSEEEECC-SHHHHHHHHHH-HHTTCCEEEEESS-S---SSTT--S-------C-HHHHHHHHHHHHHTTEEEEESC
T ss_pred             CCCeEEEECC-CccHHHHHHHH-hhcCCeEEEEEec-h---hhcc--C-------C-HHHHHHHHHHHHHCCCEEEECC
Confidence            3467999997 99999999999 5689999998754 2   1111  1       1 4455555555545566666553

>d1v9la1 c.2.1.7 (A:180-421) Glutamate dehydrogenase {Pyrobaculum islandicum [TaxId: 2277]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Pyrobaculum islandicum [TaxId: 2277]

Probab=86.83  E-value=0.94  Score=36.29  Aligned_cols=35  Identities=29%  Similarity=0.287  Sum_probs=30.5

Q ss_pred             CCCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCC
Q psy1959         160 KEKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNS  196 (296)
Q Consensus       160 ~~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~  196 (296)
                      -.|.+|+|.|. |.+|+.+++++ ...|++|+.++..
T Consensus        29 l~g~~v~IqGf-GnVG~~~a~~L-~~~Gakvv~vsD~   63 (242)
T d1v9la1          29 IEGKTVAIQGM-GNVGRWTAYWL-EKMGAKVIAVSDI   63 (242)
T ss_dssp             CTTCEEEEECC-SHHHHHHHHHH-HTTTCEEEEEECS
T ss_pred             CCCCEEEEECC-CHHHHHHHHHH-HHcCCeEEEeecc
Confidence            37999999996 99999999999 6689999987743

>d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Thermotoga maritima [TaxId: 2336]

Probab=86.70  E-value=1.5  Score=29.14  Aligned_cols=66  Identities=17%  Similarity=0.199  Sum_probs=46.2

Q ss_pred             EEEEEcCCCcHHHHH-HHHHHHhCCCEEEEEeCCcc-hHHHHHhcCCcEEEEcCCchhHHHHHHHHhCCCcccEEEECCC
Q psy1959         164 TVLVTAAGGGLGLAA-VDMATKIYKAKVIGVCNSED-KTDLIRQKGAWAALTFTNEKSLVNKVLEVSGGKYANVVFEAVG  241 (296)
Q Consensus       164 ~vlI~Ga~g~vG~aa-~~la~~~~g~~Vi~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~g~d~vld~~g  241 (296)
                      +|-+.|. |++|..+ ++++ +..|+.|...|..+. ..+.|++.|+......+. ..+          .++|+++-+.+
T Consensus         3 ~ihfiGI-gG~GMs~LA~~L-~~~G~~VsGSD~~~~~~t~~L~~~Gi~i~~gh~~-~~i----------~~~d~vV~SsA   69 (89)
T d1j6ua1           3 KIHFVGI-GGIGMSAVALHE-FSNGNDVYGSNIEETERTAYLRKLGIPIFVPHSA-DNW----------YDPDLVIKTPA   69 (89)
T ss_dssp             EEEEETT-TSHHHHHHHHHH-HHTTCEEEEECSSCCHHHHHHHHTTCCEESSCCT-TSC----------CCCSEEEECTT
T ss_pred             EEEEEeE-CHHHHHHHHHHH-HhCCCeEEEEeCCCChhHHHHHHCCCeEEeeecc-ccc----------CCCCEEEEecC
Confidence            5777887 8999865 5666 668999999998764 567788899865332222 111          36888888776


Q ss_pred             C
Q psy1959         242 G  242 (296)
Q Consensus       242 ~  242 (296)
                      -
T Consensus        70 I   70 (89)
T d1j6ua1          70 V   70 (89)
T ss_dssp             C
T ss_pred             c
Confidence            4

>d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Putative formate dehydrogenase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=86.54  E-value=0.51  Score=36.12  Aligned_cols=36  Identities=19%  Similarity=0.271  Sum_probs=32.3

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcc
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSED  198 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~  198 (296)
                      .|++|.|+|. |.+|...++++ +.+|++|++.+++..
T Consensus        41 ~gk~vgIiG~-G~IG~~va~~l-~~~g~~v~~~d~~~~   76 (181)
T d1qp8a1          41 QGEKVAVLGL-GEIGTRVGKIL-AALGAQVRGFSRTPK   76 (181)
T ss_dssp             TTCEEEEESC-STHHHHHHHHH-HHTTCEEEEECSSCC
T ss_pred             cCceEEEecc-ccccccceeee-ecccccccccccccc
Confidence            5899999997 99999999999 679999999998654

>d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-2-hydroxyisocaproate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

Probab=86.50  E-value=0.41  Score=37.26  Aligned_cols=36  Identities=33%  Similarity=0.316  Sum_probs=32.0

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcc
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSED  198 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~  198 (296)
                      .|++|.|+|. |.+|+.+++.+ +.+|++|++.++...
T Consensus        44 ~~ktvgIiG~-G~IG~~va~~l-~~fg~~v~~~d~~~~   79 (199)
T d1dxya1          44 GQQTVGVMGT-GHIGQVAIKLF-KGFGAKVIAYDPYPM   79 (199)
T ss_dssp             GGSEEEEECC-SHHHHHHHHHH-HHTTCEEEEECSSCC
T ss_pred             cceeeeeeec-ccccccccccc-cccceeeeccCCccc
Confidence            4789999997 99999999999 789999999997544

>d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]

Probab=86.47  E-value=4.3  Score=30.12  Aligned_cols=92  Identities=15%  Similarity=0.075  Sum_probs=63.6

Q ss_pred             HHHHHcC-CCCCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCcEEEEcCCchhHHHHHHHHhCC
Q psy1959         152 VFSRHAK-LKEKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNKVLEVSGG  230 (296)
Q Consensus       152 ~l~~~~~-~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~  230 (296)
                      ++.+..+ +-.|++++|.| -|-+|.-+++-+ +.+|++|+++..++-+.=++.--|... .      +.    .++.  
T Consensus        12 ~i~r~t~~~laGk~vvV~G-YG~vGrG~A~~~-rg~Ga~V~V~E~DPi~alqA~mdGf~v-~------~~----~~a~--   76 (163)
T d1v8ba1          12 GLMRATDFLISGKIVVICG-YGDVGKGCASSM-KGLGARVYITEIDPICAIQAVMEGFNV-V------TL----DEIV--   76 (163)
T ss_dssp             HHHHHHCCCCTTSEEEEEC-CSHHHHHHHHHH-HHHTCEEEEECSCHHHHHHHHTTTCEE-C------CH----HHHT--
T ss_pred             HHHHHhCceecCCEEEEec-ccccchhHHHHH-HhCCCEEEEEecCchhhHHHHhcCCcc-C------ch----hHcc--
Confidence            3334434 45899999999 599999999999 678999999999886655554445422 1      11    1222  


Q ss_pred             CcccEEEECCCCc-c-HHHHHHHhhccCceE
Q psy1959         231 KYANVVFEAVGGE-D-KTDLIRQKGAWAALT  259 (296)
Q Consensus       231 ~g~d~vld~~g~~-~-~~~~~~~lg~~~g~~  259 (296)
                      +..|+++-+.|+. . -..-++.| +.+..+
T Consensus        77 ~~aDi~vTaTGn~~vI~~~h~~~M-KdgaIl  106 (163)
T d1v8ba1          77 DKGDFFITCTGNVDVIKLEHLLKM-KNNAVV  106 (163)
T ss_dssp             TTCSEEEECCSSSSSBCHHHHTTC-CTTCEE
T ss_pred             ccCcEEEEcCCCCccccHHHHHHh-hCCeEE
Confidence            3679999999994 3 44567777 555544

>d1n2sa_ c.2.1.2 (A:) dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {Salmonella enterica serovar typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD)
species: Salmonella enterica serovar typhimurium [TaxId: 90371]

Probab=86.46  E-value=0.49  Score=38.05  Aligned_cols=63  Identities=16%  Similarity=0.180  Sum_probs=38.8

Q ss_pred             EEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCcEEEEcCCchhHHHHHHHHhCCCcccEEEECCCC
Q psy1959         164 TVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNKVLEVSGGKYANVVFEAVGG  242 (296)
Q Consensus       164 ~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~g~d~vld~~g~  242 (296)
                      +|||+|++|-+|...+..+ ...| .++++++.....      -    .+..+...+.+.+.+    .++|+||.+.+.
T Consensus         2 KILItG~tGfiG~~l~~~L-~~~g-~~v~~~~~~~~~------~----~Dl~~~~~~~~~i~~----~~~D~Vih~Aa~   64 (298)
T d1n2sa_           2 NILLFGKTGQVGWELQRSL-APVG-NLIALDVHSKEF------C----GDFSNPKGVAETVRK----LRPDVIVNAAAH   64 (298)
T ss_dssp             EEEEECTTSHHHHHHHHHT-TTTS-EEEEECTTCSSS------C----CCTTCHHHHHHHHHH----HCCSEEEECCCC
T ss_pred             EEEEECCCCHHHHHHHHHH-HhCC-CEEEEECCCccc------c----CcCCCHHHHHHHHHH----cCCCEEEEeccc
Confidence            5999999999999988877 4334 566666543321      0    122231233333332    368999999874

>d1eq2a_ c.2.1.2 (A:) ADP-L-glycero-D-mannoheptose 6-epimerase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: ADP-L-glycero-D-mannoheptose 6-epimerase
species: Escherichia coli [TaxId: 562]

Probab=86.41  E-value=1.8  Score=34.55  Aligned_cols=73  Identities=12%  Similarity=0.077  Sum_probs=43.8

Q ss_pred             EEEEcCCCcHHHHHHHHHHHhCCC-EEEEEeC--CcchHHHHHhcCCcEEEEcCCchhHHHHHHHHhCCCcccEEEECCC
Q psy1959         165 VLVTAAGGGLGLAAVDMATKIYKA-KVIGVCN--SEDKTDLIRQKGAWAALTFTNEKSLVNKVLEVSGGKYANVVFEAVG  241 (296)
Q Consensus       165 vlI~Ga~g~vG~aa~~la~~~~g~-~Vi~~~~--~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~g~d~vld~~g  241 (296)
                      |||+|++|-+|...+..+ ...|. +|++++.  +..+...+.+.......+.   .+....+.....-...+.++.+.+
T Consensus         2 ILITGgsGfIGs~lv~~L-~~~g~~~V~~~d~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~i~~~aa   77 (307)
T d1eq2a_           2 IIVTGGAGFIGSNIVKAL-NDKGITDILVVDNLKDGTKFVNLVDLNIADYMDK---EDFLIQIMAGEEFGDVEAIFHEGA   77 (307)
T ss_dssp             EEEETTTSHHHHHHHHHH-HTTTCCCEEEEECCSSGGGGHHHHTSCCSEEEEH---HHHHHHHHTTCCCSSCCEEEECCS
T ss_pred             EEEecCccHHHHHHHHHH-HhCCCCeEEEEECCCCcchhhcccccchhhhccc---hHHHHHHhhhhcccchhhhhhhcc
Confidence            799999999999988777 34586 7888863  3334444555544333333   233333333333346677777654

>d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-lactate dehydrogenase
species: Lactobacillus helveticus [TaxId: 1587]

Probab=86.23  E-value=0.54  Score=36.53  Aligned_cols=37  Identities=24%  Similarity=0.244  Sum_probs=32.6

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcch
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDK  199 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~  199 (296)
                      .|++|.|+|. |.+|..+++++ +.+|++|++.+.....
T Consensus        42 ~gk~vgIiG~-G~IG~~va~~l-~~fg~~V~~~d~~~~~   78 (197)
T d1j4aa1          42 RDQVVGVVGT-GHIGQVFMQIM-EGFGAKVITYDIFRNP   78 (197)
T ss_dssp             GGSEEEEECC-SHHHHHHHHHH-HHTTCEEEEECSSCCH
T ss_pred             cCCeEEEecc-cccchhHHHhH-hhhcccccccCccccc
Confidence            4899999997 99999999999 7899999999876443

>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Rck domain from putative potassium channel Kch
species: Escherichia coli [TaxId: 562]

Probab=86.23  E-value=3  Score=30.16  Aligned_cols=76  Identities=9%  Similarity=0.016  Sum_probs=49.7

Q ss_pred             CcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHH----HHHhcCCcEEEEcCCchhHHHHHHHHhCCCcccEEE
Q psy1959         162 KQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTD----LIRQKGAWAALTFTNEKSLVNKVLEVSGGKYANVVF  237 (296)
Q Consensus       162 g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~----~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~g~d~vl  237 (296)
                      .+.++|.|. |.+|..+++.+ ...|.+|++++.++++..    .+...+.. ++..+.  .-.+.+.++ +-+.+|.++
T Consensus         3 knHiII~G~-g~~g~~l~~~L-~~~~~~v~vId~d~~~~~~~~~~~~~~~~~-vi~Gd~--~d~~~L~~a-~i~~a~~vi   76 (153)
T d1id1a_           3 KDHFIVCGH-SILAINTILQL-NQRGQNVTVISNLPEDDIKQLEQRLGDNAD-VIPGDS--NDSSVLKKA-GIDRCRAIL   76 (153)
T ss_dssp             CSCEEEECC-SHHHHHHHHHH-HHTTCCEEEEECCCHHHHHHHHHHHCTTCE-EEESCT--TSHHHHHHH-TTTTCSEEE
T ss_pred             CCEEEEECC-CHHHHHHHHHH-HHcCCCEEEEeccchhHHHHHHHhhcCCcE-EEEccC--cchHHHHHh-ccccCCEEE
Confidence            457899997 99999999988 457999999998765432    22333443 333322  122333333 445789999


Q ss_pred             ECCCCc
Q psy1959         238 EAVGGE  243 (296)
Q Consensus       238 d~~g~~  243 (296)
                      -+.+++
T Consensus        77 ~~~~~d   82 (153)
T d1id1a_          77 ALSDND   82 (153)
T ss_dssp             ECSSCH
T ss_pred             EccccH
Confidence            999874

>d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=86.08  E-value=0.43  Score=34.11  Aligned_cols=37  Identities=14%  Similarity=0.133  Sum_probs=30.7

Q ss_pred             CCCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcc
Q psy1959         160 KEKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSED  198 (296)
Q Consensus       160 ~~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~  198 (296)
                      +..++++|.|+ |.+|+=+++.. +.+|.+|.++.+.++
T Consensus        24 ~~p~~vvIiGg-G~IG~E~A~~~-~~~G~~Vtive~~~~   60 (125)
T d1ojta2          24 EVPGKLLIIGG-GIIGLEMGTVY-STLGSRLDVVEMMDG   60 (125)
T ss_dssp             CCCSEEEEESC-SHHHHHHHHHH-HHHTCEEEEECSSSS
T ss_pred             ccCCeEEEECC-CHHHHHHHHHh-hcCCCEEEEEEeecc
Confidence            34689999997 99999988888 557999999987654

>d1oi7a1 c.2.1.8 (A:1-121) Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain
species: Thermus thermophilus [TaxId: 274]

Probab=85.63  E-value=4.4  Score=28.46  Aligned_cols=82  Identities=15%  Similarity=0.201  Sum_probs=56.5

Q ss_pred             CCCCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchH-------------HHHHhcCCcEEEEcCCchhHHHHHH
Q psy1959         159 LKEKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKT-------------DLIRQKGAWAALTFTNEKSLVNKVL  225 (296)
Q Consensus       159 ~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~-------------~~~~~~g~~~~~~~~~~~~~~~~i~  225 (296)
                      +.+..+|+|.|.+|..|..-.+-+ +.+|.+|++-+...+.-             +..++.+++..+.+-......+++.
T Consensus         4 i~k~trVivQGiTG~~G~~ht~~m-~~yGT~iVaGVtPgkgG~~~~giPVf~tV~eAv~~~~~d~SvIfVPp~~a~dAi~   82 (121)
T d1oi7a1           4 VNRETRVLVQGITGREGQFHTKQM-LTYGTKIVAGVTPGKGGMEVLGVPVYDTVKEAVAHHEVDASIIFVPAPAAADAAL   82 (121)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHH-HHHTCEEEEEECTTCTTCEETTEEEESSHHHHHHHSCCSEEEECCCHHHHHHHHH
T ss_pred             ecCCCcEEEEcCCCcHHHHHHHHH-HHhCCceEeeeecCCCCcEEECCchHhhHHHHHHhcCCeEEEEeeCHHHHHHHHH
Confidence            346789999999999999988888 56799988887644321             2234567777666655344455566


Q ss_pred             HHhCCCcccEEEECCCC
Q psy1959         226 EVSGGKYANVVFEAVGG  242 (296)
Q Consensus       226 ~~~~~~g~d~vld~~g~  242 (296)
                      ++... ++++++.-.-+
T Consensus        83 EAi~a-gI~liv~ITEg   98 (121)
T d1oi7a1          83 EAAHA-GIPLIVLITEG   98 (121)
T ss_dssp             HHHHT-TCSEEEECCSC
T ss_pred             HHHhC-CCcEEEEecCC
Confidence            65533 77777776665

>d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Transcription corepressor CtbP
species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]

Probab=85.45  E-value=0.6  Score=36.10  Aligned_cols=36  Identities=19%  Similarity=0.103  Sum_probs=32.0

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcc
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSED  198 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~  198 (296)
                      .|+++.|+|. |.+|..+++.+ +.+|++|++.++...
T Consensus        48 ~gktvgIiG~-G~IG~~va~~l-~~fg~~v~~~d~~~~   83 (193)
T d1mx3a1          48 RGETLGIIGL-GRVGQAVALRA-KAFGFNVLFYDPYLS   83 (193)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHH-HTTTCEEEEECTTSC
T ss_pred             eCceEEEecc-ccccccceeee-eccccceeeccCccc
Confidence            5889999997 99999999999 789999999997543

>d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Fatty oxidation complex alpha subunit, middle domain
species: Pseudomonas fragi [TaxId: 296]

Probab=84.88  E-value=0.37  Score=37.02  Aligned_cols=39  Identities=13%  Similarity=-0.009  Sum_probs=31.6

Q ss_pred             cEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHH
Q psy1959         163 QTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLI  203 (296)
Q Consensus       163 ~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~  203 (296)
                      ++|.|.|+ |.+|...+.++ ...|.+|++.+.+++.++.+
T Consensus         5 ~~vaViGa-G~mG~~iA~~~-a~~G~~V~l~D~~~~~l~~~   43 (186)
T d1wdka3           5 KQAAVLGA-GIMGGGIAYQS-ASKGTPILMKDINEHGIEQG   43 (186)
T ss_dssp             SSEEEECC-HHHHHHHHHHH-HHTTCCEEEECSSHHHHHHH
T ss_pred             CEEEEECc-CHHHHHHHHHH-HhCCCeEEEEECCHHHHhhh
Confidence            57899997 99998877666 45799999999998876554

>d1t4ba1 c.2.1.3 (A:1-133,A:355-367) Aspartate beta-semialdehyde dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=84.64  E-value=1.1  Score=32.98  Aligned_cols=79  Identities=11%  Similarity=0.067  Sum_probs=44.1

Q ss_pred             EEEEEcCCCcHHHHHHHHHHHh---CCCEEEEEeCCcchHHHHHhcCCc-EEEEcCCchhHHHHHHHHhCCCcccEEEEC
Q psy1959         164 TVLVTAAGGGLGLAAVDMATKI---YKAKVIGVCNSEDKTDLIRQKGAW-AALTFTNEKSLVNKVLEVSGGKYANVVFEA  239 (296)
Q Consensus       164 ~vlI~Ga~g~vG~aa~~la~~~---~g~~Vi~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~i~~~~~~~g~d~vld~  239 (296)
                      +|.|.||+|.+|+-.++++...   .-.+++...++..........+.. ......+   ..    ..   .++|++|-|
T Consensus         3 kVaIvGATG~VGqeli~~Ll~~~~~p~~~l~~~~ss~s~g~~~~~~~~~~~~~~~~~---~~----~~---~~~DivF~a   72 (146)
T d1t4ba1           3 NVGFIGWRGMVGSVLMQRMVEERDFDAIRPVFFSTSQLGQAAPSFGGTTGTLQDAFD---LE----AL---KALDIIVTC   72 (146)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHTTGGGGSEEEEEESSSTTSBCCGGGTCCCBCEETTC---HH----HH---HTCSEEEEC
T ss_pred             EEEEECCccHHHHHHHHHHHhCCCCCeeEEEEeeccccccccccccCCceeeecccc---hh----hh---hcCcEEEEe
Confidence            6899999999999999743122   233666666544332221111111 1111211   11    11   278999999


Q ss_pred             CCCccHHHHHHHh
Q psy1959         240 VGGEDKTDLIRQK  252 (296)
Q Consensus       240 ~g~~~~~~~~~~l  252 (296)
                      .+.+......+.+
T Consensus        73 ~~~~~s~~~~~~~   85 (146)
T d1t4ba1          73 QGGDYTNEIYPKL   85 (146)
T ss_dssp             SCHHHHHHHHHHH
T ss_pred             cCchHHHHhhHHH
Confidence            9987655555555

>d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glycine N-methyltransferase
domain: Glycine N-methyltransferase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=84.62  E-value=0.31  Score=40.07  Aligned_cols=99  Identities=12%  Similarity=0.060  Sum_probs=60.7

Q ss_pred             HcCCCCCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhc----CCcE-----EEEcCCchhHHHHHHH
Q psy1959         156 HAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQK----GAWA-----ALTFTNEKSLVNKVLE  226 (296)
Q Consensus       156 ~~~~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~----g~~~-----~~~~~~~~~~~~~i~~  226 (296)
                      ..+.+++.+||=.|+  |.|..+..++ + .|++|+.+|.+++-++.+++.    +...     .+..   .++...-..
T Consensus        51 ~l~~~~~~~vLD~Gc--G~G~~~~~la-~-~g~~v~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~  123 (292)
T d1xvaa_          51 LLRQHGCHRVLDVAC--GTGVDSIMLV-E-EGFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEE---ANWLTLDKD  123 (292)
T ss_dssp             HHHHTTCCEEEESSC--TTSHHHHHHH-H-TTCEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEE---CCGGGHHHH
T ss_pred             HhhhcCCCEEEEecC--CCcHHHHHHH-H-cCCeeeeccCchHHHHHHHHHHHhcccccccceeeeee---ccccccccc
Confidence            334456789998886  4478888889 5 489999999999877766542    2110     1111   111111122


Q ss_pred             HhCCCcccEEEECCCC-c--------------cHHHHHHHhhccCceEEee
Q psy1959         227 VSGGKYANVVFEAVGG-E--------------DKTDLIRQKGAWAALTFTN  262 (296)
Q Consensus       227 ~~~~~g~d~vld~~g~-~--------------~~~~~~~~lg~~~g~~~~~  262 (296)
                      ......+|.|+..... .              .+..+.+.| +++|.+.+.
T Consensus       124 ~~~~~~fd~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L-kpgG~li~~  173 (292)
T d1xvaa_         124 VPAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMV-RPGGLLVID  173 (292)
T ss_dssp             SCCTTCEEEEEECSSCGGGSCCTTSSSHHHHHHHHHHHHTE-EEEEEEEEE
T ss_pred             cCCCCCceEEEEecCchhhcCCcccChHHHHHHHHHHHHHc-CcCcEEEEe
Confidence            2234578988874322 1              366777778 899988664

>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=84.43  E-value=0.88  Score=32.12  Aligned_cols=35  Identities=17%  Similarity=0.139  Sum_probs=30.1

Q ss_pred             CcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcc
Q psy1959         162 KQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSED  198 (296)
Q Consensus       162 g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~  198 (296)
                      .++++|.|+ |.+|.=+++++ ..+|.+|.++.+.++
T Consensus        23 p~~~vIiG~-G~ig~E~A~~l-~~lG~~Vtii~~~~~   57 (122)
T d1v59a2          23 PKRLTIIGG-GIIGLEMGSVY-SRLGSKVTVVEFQPQ   57 (122)
T ss_dssp             CSEEEEECC-SHHHHHHHHHH-HHTTCEEEEECSSSS
T ss_pred             CCeEEEECC-CchHHHHHHHH-HhhCcceeEEEeccc
Confidence            478999997 99999999999 568999999997654

>d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Conserved hypothetical protein MTH1747
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=84.42  E-value=3  Score=30.14  Aligned_cols=39  Identities=10%  Similarity=0.081  Sum_probs=30.1

Q ss_pred             EEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHH
Q psy1959         164 TVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIR  204 (296)
Q Consensus       164 ~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~  204 (296)
                      +|.|+|. |.+|++.+.-+++ .|.+|++.++..++...++
T Consensus         2 kIgiIG~-G~mG~~ia~~l~~-~g~~v~~~~~~~~~~~~~~   40 (152)
T d1i36a2           2 RVGFIGF-GEVAQTLASRLRS-RGVEVVTSLEGRSPSTIER   40 (152)
T ss_dssp             EEEEESC-SHHHHHHHHHHHH-TTCEEEECCTTCCHHHHHH
T ss_pred             EEEEEcH-HHHHHHHHHHHHH-CCCeEEEEcCchhHHHHHh
Confidence            5788897 9999998877734 6899998887776655554

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=84.40  E-value=0.76  Score=36.12  Aligned_cols=38  Identities=26%  Similarity=0.194  Sum_probs=31.8

Q ss_pred             CCCCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcc
Q psy1959         159 LKEKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSED  198 (296)
Q Consensus       159 ~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~  198 (296)
                      .+.+++|+|.|+ |.-|+.++..+ ...|.+|++++..++
T Consensus        46 ~~~~k~VvIIGa-GpAGl~aA~~l-~~~G~~v~l~E~~~~   83 (233)
T d1djqa3          46 TKNKDSVLIVGA-GPSGSEAARVL-MESGYTVHLTDTAEK   83 (233)
T ss_dssp             CSSCCEEEEECC-SHHHHHHHHHH-HHTTCEEEEECSSSS
T ss_pred             ccCCceEEEEcc-cHHHHHHHHHH-HHhccceeeEeeccc
Confidence            457899999997 99999998888 447999999987554

>d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.31  E-value=0.56  Score=36.93  Aligned_cols=48  Identities=21%  Similarity=0.084  Sum_probs=39.8

Q ss_pred             HHcCCCCCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhc
Q psy1959         155 RHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQK  206 (296)
Q Consensus       155 ~~~~~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~  206 (296)
                      +...+.++.+||..|+ |. |..+..+| + .|++|+.+|.+++-.+.+++.
T Consensus        39 ~~l~~~~~~rvLd~GC-G~-G~~a~~LA-~-~G~~V~gvD~S~~ai~~a~~~   86 (229)
T d2bzga1          39 TFLKGKSGLRVFFPLC-GK-AVEMKWFA-D-RGHSVVGVEISELGIQEFFTE   86 (229)
T ss_dssp             HHHTTCCSCEEEETTC-TT-CTHHHHHH-H-TTCEEEEECSCHHHHHHHHHH
T ss_pred             HhcCCCCCCEEEEeCC-CC-cHHHHHHH-h-CCCcEEEEeCCHHHHHHHHHH
Confidence            4556789999999997 44 88899999 4 699999999999988877653

>d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=84.20  E-value=3.4  Score=30.22  Aligned_cols=45  Identities=13%  Similarity=0.023  Sum_probs=35.9

Q ss_pred             cEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcCCc
Q psy1959         163 QTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKGAW  209 (296)
Q Consensus       163 ~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g~~  209 (296)
                      ++|.+.|. |.+|...+.-+.+ .|.+|++.+++.++.+.+...+..
T Consensus         2 ~kIg~IGl-G~MG~~iA~~L~~-~g~~v~~~d~~~~~~~~~~~~~~~   46 (162)
T d3cuma2           2 KQIAFIGL-GHMGAPMATNLLK-AGYLLNVFDLVQSAVDGLVAAGAS   46 (162)
T ss_dssp             CEEEEECC-STTHHHHHHHHHH-TTCEEEEECSSHHHHHHHHHTTCE
T ss_pred             CEEEEEEE-HHHHHHHHHHHHH-CCCeEEEEECchhhhhhhhhhhcc
Confidence            36889997 9999876665524 699999999999999888877653

>d1sb8a_ c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-N-acetylglucosamine 4-epimerase WbpP
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=84.14  E-value=0.59  Score=38.90  Aligned_cols=34  Identities=24%  Similarity=0.348  Sum_probs=29.3

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeC
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCN  195 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~  195 (296)
                      .-+++||+|++|-+|...+..+ ...|.+|+++++
T Consensus        15 ~~k~iLVTG~tGfIGs~lv~~L-~~~g~~V~~~d~   48 (341)
T d1sb8a_          15 QPKVWLITGVAGFIGSNLLETL-LKLDQKVVGLDN   48 (341)
T ss_dssp             SCCEEEEETTTSHHHHHHHHHH-HHTTCEEEEEEC
T ss_pred             CCCEEEEecCCCHHHHHHHHHH-HHCcCEEEEEEC
Confidence            3468999999999999988888 457999999986

>d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Met-10+ protein-like
domain: Hypothetical protein PH0793
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=84.12  E-value=0.62  Score=37.80  Aligned_cols=89  Identities=20%  Similarity=0.197  Sum_probs=58.3

Q ss_pred             CCCCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHh----cCCc---EEEEcCCchhHHHHHHHHhCCC
Q psy1959         159 LKEKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQ----KGAW---AALTFTNEKSLVNKVLEVSGGK  231 (296)
Q Consensus       159 ~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~----~g~~---~~~~~~~~~~~~~~i~~~~~~~  231 (296)
                      +++|++|+-.++  ++|..++.+| +...++|++++.+++..+.+++    .+..   .++..+. .       +.....
T Consensus       105 ~~~g~~VlD~~a--G~G~~~l~~a-~~~~~~V~avd~n~~a~~~~~~N~~~n~l~~~v~~~~~D~-~-------~~~~~~  173 (260)
T d2frna1         105 AKPDELVVDMFA--GIGHLSLPIA-VYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDN-R-------DFPGEN  173 (260)
T ss_dssp             CCTTCEEEETTC--TTTTTHHHHH-HHTCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCT-T-------TCCCCS
T ss_pred             cCCccEEEECcc--eEcHHHHHHH-HhCCcEEEEecCCHHHHHHHHHHHHHhCCCceEEEEEcch-H-------HhccCC
Confidence            679999988875  4466677778 4445699999999998888764    2442   2232221 1       122234


Q ss_pred             cccEEE-ECCCC--ccHHHHHHHhhccCceE
Q psy1959         232 YANVVF-EAVGG--EDKTDLIRQKGAWAALT  259 (296)
Q Consensus       232 g~d~vl-d~~g~--~~~~~~~~~lg~~~g~~  259 (296)
                      .+|.|+ +....  +.+..+++.+ +.+|.+
T Consensus       174 ~~D~Ii~~~p~~~~~~l~~a~~~l-~~gG~l  203 (260)
T d2frna1         174 IADRILMGYVVRTHEFIPKALSIA-KDGAII  203 (260)
T ss_dssp             CEEEEEECCCSSGGGGHHHHHHHE-EEEEEE
T ss_pred             CCCEEEECCCCchHHHHHHHHhhc-CCCCEE
Confidence            688554 43333  5778899999 888876

>d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=83.78  E-value=1  Score=32.26  Aligned_cols=39  Identities=18%  Similarity=0.191  Sum_probs=32.5

Q ss_pred             CCCCCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcc
Q psy1959         158 KLKEKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSED  198 (296)
Q Consensus       158 ~~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~  198 (296)
                      .++++++++|.|+ |.+|.-++..+ ...|.+|.++.+.+.
T Consensus        31 ~~~~~k~v~VIGg-G~iG~E~A~~l-~~~g~~Vtvie~~~~   69 (133)
T d1q1ra2          31 QLIADNRLVVIGG-GYIGLEVAATA-IKANMHVTLLDTAAR   69 (133)
T ss_dssp             TCCTTCEEEEECC-SHHHHHHHHHH-HHTTCEEEEECSSSS
T ss_pred             hhccCCEEEEECC-chHHHHHHHHH-HhhCcceeeeeeccc
Confidence            4567899999997 99999888888 457999999997655

>d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=83.75  E-value=1.2  Score=34.04  Aligned_cols=38  Identities=18%  Similarity=0.117  Sum_probs=33.0

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchH
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKT  200 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~  200 (296)
                      .|.++.|.|. |.+|+.+++.+ +.+|++|++.++...+.
T Consensus        43 ~~k~vgiiG~-G~IG~~va~~~-~~fg~~v~~~d~~~~~~   80 (184)
T d1ygya1          43 FGKTVGVVGL-GRIGQLVAQRI-AAFGAYVVAYDPYVSPA   80 (184)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHH-HTTTCEEEEECTTSCHH
T ss_pred             cceeeeeccc-cchhHHHHHHh-hhccceEEeecCCCChh
Confidence            5889999997 99999999999 77999999999765543

>d1cf2o1 c.2.1.3 (O:1-138,O:304-336) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Methanothermus fervidus [TaxId: 2180]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Methanothermus fervidus [TaxId: 2180]

Probab=83.59  E-value=4.1  Score=30.44  Aligned_cols=94  Identities=18%  Similarity=0.191  Sum_probs=53.9

Q ss_pred             EEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCC--cchHHHHHhcCCcEEEEcCCc-hhHHH-------HHHHHhCCCcc
Q psy1959         164 TVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNS--EDKTDLIRQKGAWAALTFTNE-KSLVN-------KVLEVSGGKYA  233 (296)
Q Consensus       164 ~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~--~~~~~~~~~~g~~~~~~~~~~-~~~~~-------~i~~~~~~~g~  233 (296)
                      +|.|.|- |-+|+.+++.+......+++.+...  ......+...+.+......+. ..+.+       .+.++.  +++
T Consensus         3 ~VgINGf-GRIGR~v~R~l~~~~di~vvaInd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~--~~v   79 (171)
T d1cf2o1           3 AVAINGY-GTVGKRVADAIAQQDDMKVIGVSKTRPDFEARMALKKGYDLYVAIPERVKLFEKAGIEVAGTVDDML--DEA   79 (171)
T ss_dssp             EEEEECC-SHHHHHHHHHHHTSSSEEEEEEEESSCSHHHHHHHHTTCCEEESSGGGHHHHHHTTCCCCEEHHHHH--HTC
T ss_pred             EEEEEcC-cHHHHHHHHHHHhCCCceEEEEecCCcHHHHHHHHhcCCceEecccccceeecccCcccCCChhHhh--cCC
Confidence            6889985 9999999998844334577666542  233445555555443222110 00000       011111  269


Q ss_pred             cEEEECCCC-ccHHHHHHHhhccCceEEe
Q psy1959         234 NVVFEAVGG-EDKTDLIRQKGAWAALTFT  261 (296)
Q Consensus       234 d~vld~~g~-~~~~~~~~~lg~~~g~~~~  261 (296)
                      |+|+||+|. .....+-..+ ..+....+
T Consensus        80 DvViEcTG~f~~~~~~~~hl-~~G~K~vi  107 (171)
T d1cf2o1          80 DIVIDCTPEGIGAKNLKMYK-EKGIKAIF  107 (171)
T ss_dssp             SEEEECCSTTHHHHHHHHHH-HTTCEEEE
T ss_pred             CEEEEccCCCCCHHHHHHHH-HcCCCEEE
Confidence            999999998 5666666777 55544443

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

Probab=83.53  E-value=0.63  Score=37.69  Aligned_cols=38  Identities=24%  Similarity=0.225  Sum_probs=30.6

Q ss_pred             CCCCCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCc
Q psy1959         158 KLKEKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSE  197 (296)
Q Consensus       158 ~~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~  197 (296)
                      .....++|+|+|+ |..|+.++..+++ .|.+|.+++..+
T Consensus        26 ~~~~pkkV~IIGa-G~aGLsaA~~L~~-~G~~V~vlE~~~   63 (370)
T d2iida1          26 ATSNPKHVVIVGA-GMAGLSAAYVLAG-AGHQVTVLEASE   63 (370)
T ss_dssp             CCSSCCEEEEECC-BHHHHHHHHHHHH-HTCEEEEECSSS
T ss_pred             CCCCCCeEEEECC-CHHHHHHHHHHHH-CCCCEEEEeCCC
Confidence            4456679999997 9999998877744 699999999754

>d1kewa_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-glucose 4,6-dehydratase (RmlB)
species: Streptococcus suis, serotype 2 [TaxId: 1307]

Probab=83.29  E-value=0.72  Score=38.92  Aligned_cols=74  Identities=12%  Similarity=0.164  Sum_probs=41.0

Q ss_pred             EEEEEcCCCcHHHHHHHHHHHhCCCE-EEEEeCC--cchHHHHHhcC--CcEEE---EcCCchhHHHHHHHHhCCCcccE
Q psy1959         164 TVLVTAAGGGLGLAAVDMATKIYKAK-VIGVCNS--EDKTDLIRQKG--AWAAL---TFTNEKSLVNKVLEVSGGKYANV  235 (296)
Q Consensus       164 ~vlI~Ga~g~vG~aa~~la~~~~g~~-Vi~~~~~--~~~~~~~~~~g--~~~~~---~~~~~~~~~~~i~~~~~~~g~d~  235 (296)
                      +|||+|++|-+|...+..+.+ .|.+ |+.++..  ..+...++.+.  ....+   +..+...+...+.    ...+|+
T Consensus         2 kILItG~tGfIGs~l~~~L~~-~g~~vv~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~----~~~~d~   76 (361)
T d1kewa_           2 KILITGGAGFIGSAVVRHIIK-NTQDTVVNIDKLTYAGNLESLSDISESNRYNFEHADICDSAEITRIFE----QYQPDA   76 (361)
T ss_dssp             EEEEESTTSHHHHHHHHHHHH-HCSCEEEEEECCCTTCCGGGGTTTTTCTTEEEEECCTTCHHHHHHHHH----HHCCSE
T ss_pred             EEEEECCCcHHHHHHHHHHHH-CCCCEEEEEeCCCccccHHHHHhhhhcCCcEEEEccCCCHHHHHHHHH----hCCCCE
Confidence            689999999999998887734 5775 5555542  11222222221  11222   2233122222222    236899


Q ss_pred             EEECCCC
Q psy1959         236 VFEAVGG  242 (296)
Q Consensus       236 vld~~g~  242 (296)
                      |+.+.+.
T Consensus        77 VihlAa~   83 (361)
T d1kewa_          77 VMHLAAE   83 (361)
T ss_dssp             EEECCSC
T ss_pred             EEECccc
Confidence            9998764

>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Rhodotorula gracilis [TaxId: 5286]

Probab=83.13  E-value=0.91  Score=35.39  Aligned_cols=35  Identities=17%  Similarity=0.207  Sum_probs=28.5

Q ss_pred             CCCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCC
Q psy1959         160 KEKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNS  196 (296)
Q Consensus       160 ~~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~  196 (296)
                      +.-++|+|+|+ |..|++++..++ ..|.+|.++++.
T Consensus         4 ~~~~kVvVIGa-GiaGl~~A~~L~-~~G~~V~vier~   38 (268)
T d1c0pa1           4 HSQKRVVVLGS-GVIGLSSALILA-RKGYSVHILARD   38 (268)
T ss_dssp             CCSCEEEEECC-SHHHHHHHHHHH-HTTCEEEEEESS
T ss_pred             CCCCcEEEECc-cHHHHHHHHHHH-HCCCCEEEEeCC
Confidence            45568999998 999999777773 479999999864

>d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=83.13  E-value=0.66  Score=33.97  Aligned_cols=33  Identities=18%  Similarity=0.234  Sum_probs=28.5

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeC
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCN  195 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~  195 (296)
                      .|++|||.|+ |.+|..-+..+ ...|++|++++.
T Consensus        12 ~gkrvLViGg-G~va~~ka~~L-l~~GA~VtVvap   44 (150)
T d1kyqa1          12 KDKRILLIGG-GEVGLTRLYKL-MPTGCKLTLVSP   44 (150)
T ss_dssp             TTCEEEEEEE-SHHHHHHHHHH-GGGTCEEEEEEE
T ss_pred             CCCEEEEECC-CHHHHHHHHHH-HHCCCEEEEEeC
Confidence            6899999998 99999988888 557999998864

>d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Methoxy mycolic acid synthase 4, Mma4
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=83.01  E-value=0.83  Score=37.41  Aligned_cols=98  Identities=13%  Similarity=0.094  Sum_probs=63.3

Q ss_pred             HHHHHcCCCCCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhc----CCcE-E-EEcCCchhHHHHHH
Q psy1959         152 VFSRHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQK----GAWA-A-LTFTNEKSLVNKVL  225 (296)
Q Consensus       152 ~l~~~~~~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~----g~~~-~-~~~~~~~~~~~~i~  225 (296)
                      .+.+..++++|++||=+|+.  .|..+..++ +..|++|+.++.+++..+.+++.    |... + +...+..       
T Consensus        43 ~~~~~l~l~~g~~VLDiGCG--~G~~a~~~a-~~~g~~v~gi~ls~~q~~~a~~~~~~~~l~~~~~~~~~d~~-------  112 (280)
T d2fk8a1          43 LNLDKLDLKPGMTLLDIGCG--WGTTMRRAV-ERFDVNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWE-------  112 (280)
T ss_dssp             HHHTTSCCCTTCEEEEESCT--TSHHHHHHH-HHHCCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGG-------
T ss_pred             HHHHHcCCCCCCEEEEecCC--chHHHHHHH-HhCceeEEEecchHHHHHHHHHHHHhhccccchhhhhhhhh-------
Confidence            34477889999999999973  244556677 45699999999999988777543    4322 1 2111201       


Q ss_pred             HHhCCCcccEEEE-----CCCCc----cHHHHHHHhhccCceEEee
Q psy1959         226 EVSGGKYANVVFE-----AVGGE----DKTDLIRQKGAWAALTFTN  262 (296)
Q Consensus       226 ~~~~~~g~d~vld-----~~g~~----~~~~~~~~lg~~~g~~~~~  262 (296)
                      +.  ...+|.++.     .++..    .+..+.+.| +++|.+.+.
T Consensus       113 ~~--~~~fD~i~si~~~eh~~~~~~~~~f~~i~~~L-kpgG~~~i~  155 (280)
T d2fk8a1         113 DF--AEPVDRIVSIEAFEHFGHENYDDFFKRCFNIM-PADGRMTVQ  155 (280)
T ss_dssp             GC--CCCCSEEEEESCGGGTCGGGHHHHHHHHHHHS-CTTCEEEEE
T ss_pred             hh--ccchhhhhHhhHHHHhhhhhHHHHHHHHHhcc-CCCceEEEE
Confidence            11  236787765     33322    356677778 899988654

>d2i76a2 c.2.1.6 (A:2-154) Hypothetical protein TM1727 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM1727
species: Thermotoga maritima [TaxId: 2336]

Probab=82.59  E-value=0.36  Score=35.45  Aligned_cols=81  Identities=14%  Similarity=0.071  Sum_probs=47.2

Q ss_pred             EEEEcCCCcHHHHHHHHHHHhCCCEE-EEEeCCcchHHHHHhcCCcEEEEcCCchhHHHHHHHHhCCCcccEEEECCCCc
Q psy1959         165 VLVTAAGGGLGLAAVDMATKIYKAKV-IGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNKVLEVSGGKYANVVFEAVGGE  243 (296)
Q Consensus       165 vlI~Ga~g~vG~aa~~la~~~~g~~V-i~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~g~d~vld~~g~~  243 (296)
                      |-+.|. |.+|.+.++.+ +. +..+ .+..|+.++.+.+.+.+.....+..+          .  -+..|++|-|+...
T Consensus         2 IgfIG~-G~mg~~l~~~L-~~-~~~~~~v~~R~~~~~~~l~~~~~~~~~~~~~----------~--~~~~DiVil~v~d~   66 (153)
T d2i76a2           2 LNFVGT-GTLTRFFLECL-KD-RYEIGYILSRSIDRARNLAEVYGGKAATLEK----------H--PELNGVVFVIVPDR   66 (153)
T ss_dssp             CEEESC-CHHHHHHHHTT-C-----CCCEECSSHHHHHHHHHHTCCCCCSSCC----------C--CC---CEEECSCTT
T ss_pred             EEEEeC-cHHHHHHHHHH-Hh-CCCEEEEEeCChhhhcchhhcccccccchhh----------h--hccCcEEEEeccch
Confidence            356786 99999887766 32 4443 57888999988887765432221111          0  23567888888777


Q ss_pred             cHHHHHHHhhccCceEEe
Q psy1959         244 DKTDLIRQKGAWAALTFT  261 (296)
Q Consensus       244 ~~~~~~~~lg~~~g~~~~  261 (296)
                      .+...+..+ ++.+.+.+
T Consensus        67 ~i~~v~~~l-~~~~~ivi   83 (153)
T d2i76a2          67 YIKTVANHL-NLGDAVLV   83 (153)
T ss_dssp             THHHHHTTT-CCSSCCEE
T ss_pred             hhhHHHhhh-cccceeee
Confidence            777777777 44444433

>d2nu7a1 c.2.1.8 (A:2-120) Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain
species: Escherichia coli [TaxId: 562]

Probab=82.36  E-value=6.1  Score=27.58  Aligned_cols=81  Identities=16%  Similarity=0.254  Sum_probs=53.2

Q ss_pred             CCCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcch------------H-HHHHhcCCcEEEEcCCchhHHHHHHH
Q psy1959         160 KEKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDK------------T-DLIRQKGAWAALTFTNEKSLVNKVLE  226 (296)
Q Consensus       160 ~~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~------------~-~~~~~~g~~~~~~~~~~~~~~~~i~~  226 (296)
                      .+..+|+|.|.+|..|..-.+.+ +.+|.+|++-+.....            . +..++.+++..+.+-...-..+++.+
T Consensus         4 ~k~trVlvQGiTG~~G~~ht~~m-~~yGT~vVaGVtPgkgG~~~~giPVf~sV~eAv~~~~~~~SvIfVPp~~a~dA~~E   82 (119)
T d2nu7a1           4 DKNTKVICQGFTGSQGTFHSEQA-IAYGTKMVGGVTPGKGGTTHLGLPVFNTVREAVAATGATASVIYVPAPFCKDSILE   82 (119)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHH-HHHTCEEEEEECTTCTTEEETTEEEESSHHHHHHHHCCCEEEECCCGGGHHHHHHH
T ss_pred             cCCCcEEEEcCCCcHHHHHHHHH-HHhCCceEEEEccCCCCcccCCCchhhHHHHHHHHhCCCeEEEeccHHHHHHHHHH
Confidence            56789999999999999988888 5689998877754332            1 22234566655555443444455555


Q ss_pred             HhCCCcccEEEECCCC
Q psy1959         227 VSGGKYANVVFEAVGG  242 (296)
Q Consensus       227 ~~~~~g~d~vld~~g~  242 (296)
                      +.. .++.+++...-+
T Consensus        83 Ai~-agI~~iV~ITEg   97 (119)
T d2nu7a1          83 AID-AGIKLIITITEG   97 (119)
T ss_dssp             HHH-TTCSEEEECCCC
T ss_pred             HHH-CCCCEEEEecCC
Confidence            543 266666665555

>d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=82.26  E-value=1.1  Score=32.70  Aligned_cols=70  Identities=17%  Similarity=0.063  Sum_probs=43.5

Q ss_pred             EEEEEcCCCcHHHHHHHHHHHhCCC--EEEEEeCCcchHHHHHhcC-C---cEE-EEcCCchhHHHHHHHHhCCCcccEE
Q psy1959         164 TVLVTAAGGGLGLAAVDMATKIYKA--KVIGVCNSEDKTDLIRQKG-A---WAA-LTFTNEKSLVNKVLEVSGGKYANVV  236 (296)
Q Consensus       164 ~vlI~Ga~g~vG~aa~~la~~~~g~--~Vi~~~~~~~~~~~~~~~g-~---~~~-~~~~~~~~~~~~i~~~~~~~g~d~v  236 (296)
                      +|.|.|++|.+|+.++.++ ...+.  ++...|..+.+.. +.++. .   ... ..... .++.+.+      ++.|++
T Consensus         2 Kv~IiGA~G~VG~~~A~~l-~~~~~~~elvLiDi~~~~~~-a~Dl~~~~~~~~~~~~~~~-~~~~~~~------~~aDiv   72 (144)
T d1mlda1           2 KVAVLGASGGIGQPLSLLL-KNSPLVSRLTLYDIAHTPGV-AADLSHIETRATVKGYLGP-EQLPDCL------KGCDVV   72 (144)
T ss_dssp             EEEEETTTSTTHHHHHHHH-HTCTTCSEEEEEESSSHHHH-HHHHTTSSSSCEEEEEESG-GGHHHHH------TTCSEE
T ss_pred             eEEEECCCChHHHHHHHHH-HhCCccceEEEEeccccchh-hHHHhhhhhhcCCCeEEcC-CChHHHh------CCCCEE
Confidence            6889998899999988888 44555  7888887665433 33321 1   111 11122 3333322      479999


Q ss_pred             EECCCC
Q psy1959         237 FEAVGG  242 (296)
Q Consensus       237 ld~~g~  242 (296)
                      +-+.|.
T Consensus        73 Vitag~   78 (144)
T d1mlda1          73 VIPAGV   78 (144)
T ss_dssp             EECCSC
T ss_pred             EECCCc
Confidence            999883

>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.14  E-value=1  Score=31.81  Aligned_cols=35  Identities=9%  Similarity=0.132  Sum_probs=30.0

Q ss_pred             CcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcc
Q psy1959         162 KQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSED  198 (296)
Q Consensus       162 g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~  198 (296)
                      .++++|.|+ |.+|.-+++.+ +.+|.+|.++.+++.
T Consensus        22 pk~vvIvGg-G~iG~E~A~~l-~~~G~~Vtlv~~~~~   56 (125)
T d3grsa2          22 PGRSVIVGA-GYIAVEMAGIL-SALGSKTSLMIRHDK   56 (125)
T ss_dssp             CSEEEEECC-SHHHHHHHHHH-HHTTCEEEEECSSSS
T ss_pred             CCEEEEEcC-CccHHHHHHHH-hcCCcEEEEEeeccc
Confidence            378999997 99999988888 568999999998654

>d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein PH1915, middle and C-terminal domains
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=82.08  E-value=1.5  Score=36.44  Aligned_cols=96  Identities=16%  Similarity=0.095  Sum_probs=58.3

Q ss_pred             CCCCcEEEEEcCCCcHHHHHHHHHHHhCCC-EEEEEeCCcchHHHHHh----cCCc--EEEEcCCchhHHHHHHHH-hCC
Q psy1959         159 LKEKQTVLVTAAGGGLGLAAVDMATKIYKA-KVIGVCNSEDKTDLIRQ----KGAW--AALTFTNEKSLVNKVLEV-SGG  230 (296)
Q Consensus       159 ~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~-~Vi~~~~~~~~~~~~~~----~g~~--~~~~~~~~~~~~~~i~~~-~~~  230 (296)
                      +++|++||=.++  ++|..++.+| + .|+ +|+.++.+++..+.+++    .|..  ..+...   +..+.+... ..+
T Consensus       143 ~~~g~~VLDl~~--g~G~~si~~a-~-~ga~~V~~vD~s~~al~~a~~N~~~ngl~~~~~~~~~---d~~~~~~~~~~~~  215 (324)
T d2as0a2         143 VQPGDRVLDVFT--YTGGFAIHAA-I-AGADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVG---SAFEEMEKLQKKG  215 (324)
T ss_dssp             CCTTCEEEETTC--TTTHHHHHHH-H-TTCSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEES---CHHHHHHHHHHTT
T ss_pred             cCCCCeeecccC--cccchhhhhh-h-cCCcEEEeecCCHHHHHHHHHHHHHcCCCccceeeec---hhhhhhHHHHhcc
Confidence            578999876654  4466666677 4 355 89999999998888765    3553  222222   222333322 234


Q ss_pred             CcccEEEECCC---C--c-----------cHHHHHHHhhccCceEEee
Q psy1959         231 KYANVVFEAVG---G--E-----------DKTDLIRQKGAWAALTFTN  262 (296)
Q Consensus       231 ~g~d~vld~~g---~--~-----------~~~~~~~~lg~~~g~~~~~  262 (296)
                      ..+|+|+-...   .  .           .+..+++++ ++||.+.+.
T Consensus       216 ~~fD~Vi~DpP~~~~~~~~~~~~~~~y~~l~~~a~~ll-~pGG~lv~~  262 (324)
T d2as0a2         216 EKFDIVVLDPPAFVQHEKDLKAGLRAYFNVNFAGLNLV-KDGGILVTC  262 (324)
T ss_dssp             CCEEEEEECCCCSCSSGGGHHHHHHHHHHHHHHHHTTE-EEEEEEEEE
T ss_pred             CCCCchhcCCccccCCHHHHHHHHHHHHHHHHHHHHHc-CCCcEEEEE
Confidence            57998886222   1  1           245566677 888887553

>d1diha1 c.2.1.3 (A:2-130,A:241-273) Dihydrodipicolinate reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Escherichia coli [TaxId: 562]

Probab=81.97  E-value=1.1  Score=33.43  Aligned_cols=94  Identities=19%  Similarity=0.199  Sum_probs=54.4

Q ss_pred             EEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchH-----------------------HHHHhcCCcEEEEcCCchhH
Q psy1959         164 TVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKT-----------------------DLIRQKGAWAALTFTNEKSL  220 (296)
Q Consensus       164 ~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~-----------------------~~~~~~g~~~~~~~~~~~~~  220 (296)
                      +|.|.|++|-+|+++++.+....+++++.....+...                       +.+ ...++.+++++. .+.
T Consensus         6 kI~i~Ga~GrMG~~i~~~i~~~~~~~lv~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~~~~~~-~~~~DViIDFs~-p~~   83 (162)
T d1diha1           6 RVAIAGAGGRMGRQLIQAALALEGVQLGAALEREGSSLLGSDAGELAGAGKTGVTVQSSLDAV-KDDFDVFIDFTR-PEG   83 (162)
T ss_dssp             EEEETTTTSHHHHHHHHHHHHSTTEECCCEECCTTCTTCSCCTTCSSSSSCCSCCEESCSTTT-TTSCSEEEECSC-HHH
T ss_pred             EEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecccchhccchhhhhhccccCCceeeccHHHH-hcccceEEEecc-HHH
Confidence            6899999999999999999665577776554322110                       000 013566777776 333


Q ss_pred             HHHHHHHhCCCcccEEEECCCC-ccHHHHHHHhhccCceE
Q psy1959         221 VNKVLEVSGGKYANVVFEAVGG-EDKTDLIRQKGAWAALT  259 (296)
Q Consensus       221 ~~~i~~~~~~~g~d~vld~~g~-~~~~~~~~~lg~~~g~~  259 (296)
                      .....+.....+..+|+.+.|- +.-...++.....-+.+
T Consensus        84 ~~~~~~~a~~~~~~~ViGTTG~~~~~~~~i~~~a~~ipi~  123 (162)
T d1diha1          84 TLNHLAFCRQHGKGMVIGTTGFDEAGKQAIRDAAADIAIV  123 (162)
T ss_dssp             HHHHHHHHHHTTCEEEECCCCCCHHHHHHHHHHTTTSCEE
T ss_pred             HHHHHHHHHhccceeEEecCCCcHHHHHHHHHHcCCCCEE
Confidence            3333333333478888888886 22233444442333333

>d2bhsa1 c.79.1.1 (A:2-293) O-acetylserine sulfhydrylase (Cysteine synthase) {Escherichia coli, isoform B (CysM) [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: O-acetylserine sulfhydrylase (Cysteine synthase)
species: Escherichia coli, isoform B (CysM) [TaxId: 562]

Probab=81.78  E-value=5.8  Score=31.86  Aligned_cols=56  Identities=20%  Similarity=0.302  Sum_probs=40.5

Q ss_pred             HHcCCCCCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeC---CcchHHHHHhcCCcEEE
Q psy1959         155 RHAKLKEKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCN---SEDKTDLIRQKGAWAAL  212 (296)
Q Consensus       155 ~~~~~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~---~~~~~~~~~~~g~~~~~  212 (296)
                      +...++++..|+ ...+|..|++++..| +.+|.+++++..   ++.|.+.++.+|+..++
T Consensus        53 ~~g~~~~~~~vv-~aSsGN~g~a~A~~a-~~~G~~~~i~~p~~~~~~k~~~~~~~GA~v~~  111 (292)
T d2bhsa1          53 KRGEIKPGDVLI-EATSGNTGIALAMIA-ALKGYRMKLLMPDNMSQERRAAMRAYGAELIL  111 (292)
T ss_dssp             HTTSCCTTSEEE-EECCSHHHHHHHHHH-HHHTCEEEEEEESCCCHHHHHHHHHTTCEEEE
T ss_pred             HhCCcCCCceee-eecccchhHHHHHHH-HhcCcceEeeeccCchhhhhHHHHHhCCCcce
Confidence            445556666554 455699999999999 567887666554   56678888899987554

>d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Sheep (Ovis orientalis aries) [TaxId: 9940]

Probab=81.59  E-value=2.2  Score=31.81  Aligned_cols=43  Identities=9%  Similarity=-0.000  Sum_probs=34.6

Q ss_pred             cEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhcC
Q psy1959         163 QTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQKG  207 (296)
Q Consensus       163 ~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~g  207 (296)
                      .+|.++|. |.+|...+.-+.+ .|.+|++.++++++.+.+.+.+
T Consensus         3 ~nIg~IGl-G~MG~~mA~~L~~-~G~~V~v~dr~~~~~~~l~~~~   45 (176)
T d2pgda2           3 ADIALIGL-AVMGQNLILNMND-HGFVVCAFNRTVSKVDDFLANE   45 (176)
T ss_dssp             BSEEEECC-SHHHHHHHHHHHH-TTCCEEEECSSTHHHHHHHHTT
T ss_pred             CcEEEEeE-hHHHHHHHHHHHH-CCCeEEEEcCCHHHHHHHHHhc
Confidence            46889997 9999886666634 6999999999999998876553

>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=81.48  E-value=1.1  Score=31.13  Aligned_cols=35  Identities=26%  Similarity=0.188  Sum_probs=29.3

Q ss_pred             CcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcc
Q psy1959         162 KQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSED  198 (296)
Q Consensus       162 g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~  198 (296)
                      .++++|.|+ |.+|.-+++.+ +.+|.+|.++.+.+.
T Consensus        21 p~~vvIiGg-G~~G~E~A~~l-~~~g~~Vtlve~~~~   55 (115)
T d1lvla2          21 PQHLVVVGG-GYIGLELGIAY-RKLGAQVSVVEARER   55 (115)
T ss_dssp             CSEEEEECC-SHHHHHHHHHH-HHHTCEEEEECSSSS
T ss_pred             CCeEEEECC-CHHHHHHHHHH-hhcccceEEEeeecc
Confidence            478999997 99999988888 457999999987654

>d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-glycerate dehydrogenase
species: Hyphomicrobium methylovorum [TaxId: 84]

Probab=81.18  E-value=1.7  Score=33.31  Aligned_cols=37  Identities=14%  Similarity=0.153  Sum_probs=32.4

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcch
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDK  199 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~  199 (296)
                      .|.++.|+|. |.+|...++++ +.+|++|+..+.....
T Consensus        46 ~g~tvgIiG~-G~IG~~va~~l-~~fg~~v~~~d~~~~~   82 (191)
T d1gdha1          46 DNKTLGIYGF-GSIGQALAKRA-QGFDMDIDYFDTHRAS   82 (191)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHH-HTTTCEEEEECSSCCC
T ss_pred             cccceEEeec-ccchHHHHHHH-Hhhccccccccccccc
Confidence            3899999997 99999999999 7799999999875553

>d1euca1 c.2.1.8 (A:1-130) Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=81.17  E-value=7.2  Score=27.62  Aligned_cols=82  Identities=16%  Similarity=0.164  Sum_probs=57.7

Q ss_pred             CCCCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcch------------HHHH-HhcCCcEEEEcCCchhHHHHHH
Q psy1959         159 LKEKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDK------------TDLI-RQKGAWAALTFTNEKSLVNKVL  225 (296)
Q Consensus       159 ~~~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~------------~~~~-~~~g~~~~~~~~~~~~~~~~i~  225 (296)
                      +.+..+|++.|.+|..|..-.+.+ ..+|-+|++-+...+.            .+++ ++.+++..+.+-...-..+++.
T Consensus        12 i~k~TrVivQGiTG~~G~~ht~~m-~~YGT~iVaGVtPgKgG~~~~giPVf~tV~eA~~~~~~daSvIfVPp~~a~dAi~   90 (130)
T d1euca1          12 VDKNTKVICQGFTGKQGTFHSQQA-LEYGTNLVGGTTPGKGGKTHLGLPVFNTVKEAKEQTGATASVIYVPPPFAAAAIN   90 (130)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHH-HHHTCEEEEEECTTCTTCEETTEEEESSHHHHHHHHCCCEEEECCCHHHHHHHHH
T ss_pred             EcCCCeEEEEcCCCcHHHHHHHHH-HHhcCCeEEeeccCCCCccccCccchhhHHHHHHhcCCcEEEEecCHHHHHHHHH
Confidence            467889999999999999988888 5589998877754321            2333 3457777666655345556666


Q ss_pred             HHhCCCcccEEEECCCC
Q psy1959         226 EVSGGKYANVVFEAVGG  242 (296)
Q Consensus       226 ~~~~~~g~d~vld~~g~  242 (296)
                      ++.. .++.+++...-+
T Consensus        91 EAi~-agI~liV~ITEg  106 (130)
T d1euca1          91 EAID-AEVPLVVCITEG  106 (130)
T ss_dssp             HHHH-TTCSEEEECCCC
T ss_pred             HHHh-CCCCEEEEecCC
Confidence            6654 378887777766

>d1hwxa1 c.2.1.7 (A:209-501) Glutamate dehydrogenase {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=80.76  E-value=1  Score=37.13  Aligned_cols=33  Identities=24%  Similarity=0.380  Sum_probs=29.4

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeC
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCN  195 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~  195 (296)
                      .|.+|+|.|- |.+|+.+++++ ...|++|+.++.
T Consensus        35 ~gktvaIqGf-GnVG~~~A~~L-~e~Gakvv~vsD   67 (293)
T d1hwxa1          35 GDKTFAVQGF-GNVGLHSMRYL-HRFGAKCVAVGE   67 (293)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHH-HHTTCEEEEEEE
T ss_pred             CCCEEEEECC-CHHHHHHHHHH-HHCCCEEEEEEc
Confidence            6899999996 99999999999 568999998874

>d1xeaa1 c.2.1.3 (A:2-122,A:267-312) Putative oxidoreductase VCA1048 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Putative oxidoreductase VCA1048
species: Vibrio cholerae [TaxId: 666]

Probab=80.74  E-value=2.4  Score=31.21  Aligned_cols=84  Identities=7%  Similarity=-0.042  Sum_probs=53.6

Q ss_pred             EEEEEcCCCcHHHH-HHHHHHHhCCCEEEEEeCCcchHHHHH-hcCCcEEEEcCCchhHHHHHHHHhCCCcccEEEECCC
Q psy1959         164 TVLVTAAGGGLGLA-AVDMATKIYKAKVIGVCNSEDKTDLIR-QKGAWAALTFTNEKSLVNKVLEVSGGKYANVVFEAVG  241 (296)
Q Consensus       164 ~vlI~Ga~g~vG~a-a~~la~~~~g~~Vi~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~i~~~~~~~g~d~vld~~g  241 (296)
                      ++.|.|+ |..|.. .....++..+.++++.+.++++.+.+. +++....+  .   ++.+.+    . ..+|+|+-|+.
T Consensus         3 rvgiiG~-G~~~~~~~~~~l~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~--~---~~~~ll----~-~~iD~V~I~tp   71 (167)
T d1xeaa1           3 KIAMIGL-GDIAQKAYLPVLAQWPDIELVLCTRNPKVLGTLATRYRVSATC--T---DYRDVL----Q-YGVDAVMIHAA   71 (167)
T ss_dssp             EEEEECC-CHHHHHTHHHHHTTSTTEEEEEECSCHHHHHHHHHHTTCCCCC--S---STTGGG----G-GCCSEEEECSC
T ss_pred             EEEEEcC-CHHHHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHhccccccc--c---cHHHhc----c-cccceeccccc
Confidence            5789997 988864 455553444668887887777776664 45554322  1   121211    1 26899998888


Q ss_pred             C-ccHHHHHHHhhccCceE
Q psy1959         242 G-EDKTDLIRQKGAWAALT  259 (296)
Q Consensus       242 ~-~~~~~~~~~lg~~~g~~  259 (296)
                      . .....+..++ ..+-.+
T Consensus        72 ~~~H~~~~~~al-~~gk~V   89 (167)
T d1xeaa1          72 TDVHSTLAAFFL-HLGIPT   89 (167)
T ss_dssp             GGGHHHHHHHHH-HTTCCE
T ss_pred             cccccccccccc-cccccc
Confidence            7 5788888888 555433

>d1bgva1 c.2.1.7 (A:195-449) Glutamate dehydrogenase {Clostridium symbiosum [TaxId: 1512]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Clostridium symbiosum [TaxId: 1512]

Probab=80.57  E-value=1.5  Score=35.29  Aligned_cols=34  Identities=18%  Similarity=0.169  Sum_probs=29.5

Q ss_pred             CCCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeC
Q psy1959         160 KEKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCN  195 (296)
Q Consensus       160 ~~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~  195 (296)
                      -+|.+|+|.|- |.+|+.+++++ ...|++|+++..
T Consensus        34 l~g~~v~IQGf-GnVG~~~a~~L-~e~GakvvavsD   67 (255)
T d1bgva1          34 LVGKTVALAGF-GNVAWGAAKKL-AELGAKAVTLSG   67 (255)
T ss_dssp             STTCEEEECCS-SHHHHHHHHHH-HHHTCEEEEEEE
T ss_pred             CCCCEEEEECC-CHHHHHHHHHH-HHcCCeEEEEec
Confidence            37899999996 99999999999 557999988764

>d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Formate dehydrogenase
species: Pseudomonas sp., strain 101 [TaxId: 306]

Probab=80.56  E-value=1.6  Score=33.20  Aligned_cols=42  Identities=19%  Similarity=0.158  Sum_probs=34.6

Q ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHH
Q psy1959         161 EKQTVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIR  204 (296)
Q Consensus       161 ~g~~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~  204 (296)
                      .+.++.|.|. |.+|...++.+ +.+|.+|+..++........+
T Consensus        43 ~~~~vgiiG~-G~IG~~va~~l-~~fg~~v~~~d~~~~~~~~~~   84 (188)
T d2naca1          43 EAMHVGTVAA-GRIGLAVLRRL-APFDVHLHYTDRHRLPESVEK   84 (188)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHH-GGGTCEEEEECSSCCCHHHHH
T ss_pred             cccceeeccc-cccchhhhhhh-hccCceEEEEeeccccccccc
Confidence            5889999997 99999999999 779999999997654444333

>d2hjsa1 c.2.1.3 (A:3-129,A:320-336) Usg-1 protein homolog PA3116 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Usg-1 protein homolog PA3116
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=80.31  E-value=0.46  Score=34.91  Aligned_cols=89  Identities=15%  Similarity=0.072  Sum_probs=48.6

Q ss_pred             cEEEEEcCCCcHHHHHHHHHHHh--CCCEEEEEeCCcchHHHHHhcCCcEEEEcCCchhHHHHHHHHhCCCcccEEEECC
Q psy1959         163 QTVLVTAAGGGLGLAAVDMATKI--YKAKVIGVCNSEDKTDLIRQKGAWAALTFTNEKSLVNKVLEVSGGKYANVVFEAV  240 (296)
Q Consensus       163 ~~vlI~Ga~g~vG~aa~~la~~~--~g~~Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~g~d~vld~~  240 (296)
                      -+|.|.|++|-+|+-.++++.+.  -..++..+..+...-+.+...+.+  +....   ..     ...-.+.|++|-+.
T Consensus         3 mnVaIvGATGyvG~eli~lL~~~~hP~~~l~~~~s~~~~Gk~i~~~~~~--~~~~~---~~-----~~~~~~~d~vf~a~   72 (144)
T d2hjsa1           3 LNVAVVGATGSVGEALVGLLDERDFPLHRLHLLASAESAGQRMGFAESS--LRVGD---VD-----SFDFSSVGLAFFAA   72 (144)
T ss_dssp             CCEEEETTTSHHHHHHHHHHHHTTCCCSCEEEEECTTTTTCEEEETTEE--EECEE---GG-----GCCGGGCSEEEECS
T ss_pred             CEEEEECCCCHHHHHHHHHHHhcCCCceEEEEEeecccCCcceeecccc--chhcc---ch-----hhhhccceEEEecC
Confidence            36899999999999999988422  244666665443322221111111  11111   00     01124689999999


Q ss_pred             CCccHHHHHHHhhccCceEEee
Q psy1959         241 GGEDKTDLIRQKGAWAALTFTN  262 (296)
Q Consensus       241 g~~~~~~~~~~lg~~~g~~~~~  262 (296)
                      +..........+ ...|...++
T Consensus        73 p~~~s~~~~~~~-~~~g~~VID   93 (144)
T d2hjsa1          73 AAEVSRAHAERA-RAAGCSVID   93 (144)
T ss_dssp             CHHHHHHHHHHH-HHTTCEEEE
T ss_pred             Ccchhhhhcccc-ccCCceEEe
Confidence            886555555555 344444343

>d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: GDP-mannose 6-dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=80.11  E-value=1.2  Score=34.27  Aligned_cols=41  Identities=29%  Similarity=0.310  Sum_probs=33.4

Q ss_pred             EEEEEcCCCcHHHHHHHHHHHhCCCEEEEEeCCcchHHHHHhc
Q psy1959         164 TVLVTAAGGGLGLAAVDMATKIYKAKVIGVCNSEDKTDLIRQK  206 (296)
Q Consensus       164 ~vlI~Ga~g~vG~aa~~la~~~~g~~Vi~~~~~~~~~~~~~~~  206 (296)
                      +|.|+|. |-+|+..+..+ ...|.+|++.|.++++.+.+++-
T Consensus         2 kI~ViGl-G~vGl~~a~~l-a~~g~~V~g~D~n~~~i~~ln~g   42 (202)
T d1mv8a2           2 RISIFGL-GYVGAVCAGCL-SARGHEVIGVDVSSTKIDLINQG   42 (202)
T ss_dssp             EEEEECC-STTHHHHHHHH-HHTTCEEEEECSCHHHHHHHHTT
T ss_pred             EEEEECC-CHhHHHHHHHH-HhCCCcEEEEeCCHHHHHHhccc
Confidence            5789997 99998865555 34699999999999998888754