Psyllid ID: psy1964

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-
MSINFIVSGNPCQYVKLNVGGSLHYTTIGTLTKHDTMLRAMFSGRMEILTDSEGWVLIDRCGKHFGIILNFLRDGQVSLPENPKDVAELLAEAKYYCITELTDLCEQTIKRKQRETEPICRVPLITSLKEEQLLLNATAKPVVKLLINRHNNKYSYTSTSDDNLLKNIELFDKLALRFSGRLLFIKDVIGSSEICCWSFFGHGKKIAEVCCTSIVYATDKKHTKQSVWLKFLKINQSIFFFNHGVSRPGYFGARPVVIRPFVTGMRPYTFPAELMQATSTRGAVAGMSSYTSDEEEERSGLARLRGILWRGQSRRINALRCQRFGRMEGWVLIDRCGKHFGIILNFLRDGQVSLPENPKDVAELLAEAKYYCITALCLNFSYFLLGIWHSKSTYWIKILQFLGLELYFSGTSHDVLPLGVSYRFSGRLLFIKDVIGSRTSHDVLPFGVSYRFSGRLLFIKDVIGSSEICCWSFFGHGKKIAEVCCTSIVYATDKKHTKVEFPEARIYEETLNIILYEARNPPDQELGHVDA
ccccccccccccccEEEEEccEEEEEccccccccccHHHHHHcccccccccccccEEEccccccHHHHHHccccccccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHccccccEEEEEEEccccccccccccHHHHHHHHHHHHHHHHcccEEEEEEcccccccEEEEEEEEcccEEEEEEEEEEEEEcccccccccEEEEEcccccccEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEcEEEEcccccccHHHHcccccccccEEEccccccHHHHHHHHccccccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHccccccccEEEEEcccccHHccccccccccEEEEEEEEcccEEEEEEcccccccccccccccccEEcccEEEEEEEccccccEEEEEEEcccEEEEEEEEccEEEcccccccEEEccccccHHHHHHEEEcccccccccccccccc
cccccccccccccEEEEEcccEEEEEcccccccccHHHHHHHccccccccccccEEEEEccccHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccEEEEEEEccHHHHHHHHHcccccEEEEEEEccccEEEcccccccHHHHHHHHHHHHHHHccccEEEEEEccccccEEEEEEEccccEEEEEEEEEEEEEccccccEEEEEHHHccHHHHHHHccccccccccccccccEEEccccccccccccHHHHccccccccccccccccccHHHHccccEEEEEEcHHHcccHcHHHHHHcccccccEEEEEcccccHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccEEEEEEEccHHHHHHEEccccccEEEEEEEccccEEEccccccccHHHHHHHHHHHHHHccccEEEEEEccccccEEEEEEEccccEEEEEEEEEEEEEccccccEEcccHHHHHHHHHHHHHHcccccccccHccccc
msinfivsgnpcqyVKLNvggslhyttigtltkHDTMLRAMFSGRMEILTDSEGWVLIDRCGKHFGIILNFLRdgqvslpenpKDVAELLAEAKYYCITELTDLCEQTIKRKqretepicrvpliTSLKEEQLLLNATAKPVVKLLINRhnnkysytstsddnLLKNIELFDKLALRFSGRLLFIKDVigsseiccwsffghgkkiAEVCCTSIvyatdkkhtKQSVWLKFLKINQSIFffnhgvsrpgyfgarpvvirpfvtgmrpytfpaeLMQATstrgavagmssytsdeeEERSGLARLRGILWRGQSRRINALRCQRFGRMEGWVLIDRCGKHFGIILNFLRdgqvslpenpKDVAELLAEAKYYCITALCLNFSYFLLGIWHSKSTYWIKILQFLGLELyfsgtshdvlplgvsyrfSGRLLFIKDVigsrtshdvlpfgvsyrfsgRLLFIKDVIgsseiccwsffghgkkiAEVCCTSIvyatdkkhtkvefpeariYEETLNIILYearnppdqelghvda
msinfivsgnpCQYVKLNVGGSLHYTTIGTLTKHDTMLRAMFSGRMEILTDSEGWVLIDRCGKHFGIILNFLRDGQVSLPENPKDVAELLAEAKYYCITELTDLCEQTIkrkqretepicrVPLITSLKEEQLLLNATAKPVVKLLINRHNNkysytstsddnllKNIELFDKLALRFSGRLLFIKDVIGSSEICCWSFFGHGKKIAEVCCTSIVYATDKKHTKQSVWLKFLKINQSIFFFNHGVSRPGYFGARPVVIRPFVTGMRPYTFPAELMQATSTRGAVAGMSSYTSDEEEERSGLARlrgilwrgqsrrinalrcQRFGRMEGWVLIDRCGKHFGIILNFLRDGQVSLPENPKDVAELLAEAKYYCITALCLNFSYFLLGIWHSKSTYWIKILQFLGLELYFSGTSHDVLPLGVSYRFSGRLLFIKDVigsrtshdvlpfgvsYRFSGRLLFIKDVIGSSEICCWSFFGHGKKIAEVCCTSIVyatdkkhtkvefpearIYEETLNIILYearnppdqelghvda
MSINFIVSGNPCQYVKLNVGGSLHYTTIGTLTKHDTMLRAMFSGRMEILTDSEGWVLIDRCGKHFGIILNFLRDGQVSLPENPKDVAELLAEAKYYCITELTDLCEQTIKRKQRETEPICRVPLITSLKEEQLLLNATAKPVVKLLINRHNNKYSYTSTSDDNLLKNIELFDKLALRFSGRLLFIKDVIGSSEICCWSFFGHGKKIAEVCCTSIVYATDKKHTKQSVWLKFLKINQSIFFFNHGVSRPGYFGARPVVIRPFVTGMRPYTFPAELMQATSTRGAVAGMSSYTSDEEEERSGLARLRGILWRGQSRRINALRCQRFGRMEGWVLIDRCGKHFGIILNFLRDGQVSLPENPKDVAELLAEAKYYCITALCLNFSYFLLGIWHSKSTYWIKILQFLGLELYFSGTSHDVLPLGVSYRFSGRLLFIKDVIGSRTSHDVLPFGVSYRFSGRLLFIKDVIGSSEICCWSFFGHGKKIAEVCCTSIVYATDKKHTKVEFPEARIYEETLNIILYEARNPPDQELGHVDA
**INFIVSGNPCQYVKLNVGGSLHYTTIGTLTKHDTMLRAMFSGRMEILTDSEGWVLIDRCGKHFGIILNFLRDGQVSLPENPKDVAELLAEAKYYCITELTDLCEQTIKRKQRETEPICRVPLITSLKEEQLLLNATAKPVVKLLINRHNNKYSYTSTSDDNLLKNIELFDKLALRFSGRLLFIKDVIGSSEICCWSFFGHGKKIAEVCCTSIVYATDKKHTKQSVWLKFLKINQSIFFFNHGVSRPGYFGARPVVIRPFVTGMRPYTFPAELM*************************LARLRGILWRGQSRRINALRCQRFGRMEGWVLIDRCGKHFGIILNFLRDGQVSLPENPKDVAELLAEAKYYCITALCLNFSYFLLGIWHSKSTYWIKILQFLGLELYFSGTSHDVLPLGVSYRFSGRLLFIKDVIGSRTSHDVLPFGVSYRFSGRLLFIKDVIGSSEICCWSFFGHGKKIAEVCCTSIVYATDKKHTKVEFPEARIYEETLNIILYE**************
**************VKLNVGGSLHYTTIGTLTKHDTMLRAMFSGRMEILTDSEGWVLIDRCGKHFGIILNFLRDGQVSLPENPKDVAELLAEAKYYCITELTDLC*****************PLITSLKEEQLLLNATAKPVVKLLINRHNNKYSYTSTSDDNLLKNIELFDKLALRFSGRLLFIKDVIGSSEICCWSFFGHGKKIAEVCCTSIVYATDK**TK*SVWLKFLKINQSIFFFNHGV*************************************AVAGMSSYTSDEEEERSGLARLRGILWRGQSRRINAL***RFGRMEGWVLIDRCGKHFGIILNFLRDGQVSLPENPKDVAELLAEAKYYCITALCLNFSYFL**********WIKILQFLG*******TSHDVLPLGVSYRFSGRLLFIKDVIGSRTSHDVLPFGVSYRFSGRLLFIKDVIGSSEICCWSFFGHGKKIAEVCCTSIVYATDKKHTKVEFPEARIYEETLNIILYE**************
MSINFIVSGNPCQYVKLNVGGSLHYTTIGTLTKHDTMLRAMFSGRMEILTDSEGWVLIDRCGKHFGIILNFLRDGQVSLPENPKDVAELLAEAKYYCITELTDLCEQTIKRKQRETEPICRVPLITSLKEEQLLLNATAKPVVKLLINRHNNKYSYTSTSDDNLLKNIELFDKLALRFSGRLLFIKDVIGSSEICCWSFFGHGKKIAEVCCTSIVYATDKKHTKQSVWLKFLKINQSIFFFNHGVSRPGYFGARPVVIRPFVTGMRPYTFPAELMQATST*******************GLARLRGILWRGQSRRINALRCQRFGRMEGWVLIDRCGKHFGIILNFLRDGQVSLPENPKDVAELLAEAKYYCITALCLNFSYFLLGIWHSKSTYWIKILQFLGLELYFSGTSHDVLPLGVSYRFSGRLLFIKDVIGSRTSHDVLPFGVSYRFSGRLLFIKDVIGSSEICCWSFFGHGKKIAEVCCTSIVYATDKKHTKVEFPEARIYEETLNIILYEARNPPDQELGHVDA
**********PCQYVKLNVGGSLHYTTIGTLTKHDTMLRAMFSGRMEILTDSEGWVLIDRCGKHFGIILNFLRDGQVSLPENPKDVAELLAEAKYYCITELTDLCEQTIKRKQRETEPICRVPLITSLKEEQLLLNATAKPVVKLLINRHNNKYSYTSTSDDNLLKNIELFDKLALRFSGRLLFIKDVIGSSEICCWSFFGHGKKIAEVCCTSIVYATDKKHTKQSVWLKFLKINQSIFFFNHGVSRPGYFGARPVVIRPFVTGMR**********************S**SDEEEERSGLARLRGILWRGQSRRINALRCQRFGRMEGWVLIDRCGKHFGIILNFLRDGQVSLPENPKDVAELLAEAKYYCITALCLNFSYFLLGIWHSKSTYWIKILQFLGLELYFSGTSHDVLPLGVSYRFSGRLLFIKDVIGSRTSHDVLPFGVSYRFSGRLLFIKDVIGSSEICCWSFFGHGKKIAEVCCTSIVYATDKKHTKVEFPEARIYEETLNIILYEAR************
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MSINFIVSGNPCQYVKLNVGGSLHYTTIGTLTKHDTMLRAMFSGRMEILTDSEGWVLIDRCGKHFGIILNFLRDGQVSLPENPKDVAELLAEAKYYCITELTDLCEQTIKRKQRETEPICRVPLITSLKEEQLLLNATAKPVVKLLINRHNNKYSYTSTSDDNLLKNIELFDKLALRFSGRLLFIKDVIGSSEICCWSFFGHGKKIAEVCCTSIVYATDKKHTKQSVWLKFLKINQSIFFFNHGVSRPGYFGARPVVIRPFVTGMRPYTFPAELMQATSTRGAVAGMSSYTSDEEEERSGLARLRGILWRGQSRRINALRCQRFGRMEGWVLIDRCGKHFGIILNFLRDGQVSLPENPKDVAELLAEAKYYCITALCLNFSYFLLGIWHSKSTYWIKILQFLGLELYFSGTSHDVLPLGVSYRFSGRLLFIKDVIGSRTSHDVLPFGVSYRFSGRLLFIKDVIGSSEICCWSFFGHGKKIAEVCCTSIVYATDKKHTKVEFPEARIYEETLNIILYEARNPPDQELGHVDA
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query531 2.2.26 [Sep-21-2011]
Q13829316 BTB/POZ domain-containing yes N/A 0.397 0.667 0.683 6e-87
Q5RBH4316 BTB/POZ domain-containing yes N/A 0.397 0.667 0.683 7e-87
Q7TNY1316 BTB/POZ domain-containing yes N/A 0.397 0.667 0.688 1e-86
Q9H3F6313 BTB/POZ domain-containing no N/A 0.416 0.706 0.681 1e-86
Q7TPL3315 BTB/POZ domain-containing no N/A 0.416 0.701 0.681 2e-86
Q5F3E8314 BTB/POZ domain-containing no N/A 0.397 0.671 0.688 2e-86
Q922M3315 BTB/POZ domain-containing yes N/A 0.416 0.701 0.681 3e-86
O70479316 BTB/POZ domain-containing no N/A 0.397 0.667 0.674 4e-85
Q8BGV7329 BTB/POZ domain-containing no N/A 0.397 0.641 0.693 1e-84
Q28DC9319 BTB/POZ domain-containing no N/A 0.397 0.661 0.683 1e-84
>sp|Q13829|BACD2_HUMAN BTB/POZ domain-containing adapter for CUL3-mediated RhoA degradation protein 2 OS=Homo sapiens GN=TNFAIP1 PE=1 SV=1 Back     alignment and function desciption
 Score =  322 bits (824), Expect = 6e-87,   Method: Compositional matrix adjust.
 Identities = 145/212 (68%), Positives = 183/212 (86%), Gaps = 1/212 (0%)

Query: 13  QYVKLNVGGSLHYTTIGTLTKHDTMLRAMFSGRMEILTDSEGWVLIDRCGKHFGIILNFL 72
           +YV+LNVGGSL+YTT+  LT+HDTML+AMFSGRME+LTD EGW+LIDRCGKHFG ILN+L
Sbjct: 28  KYVQLNVGGSLYYTTVRALTRHDTMLKAMFSGRMEVLTDKEGWILIDRCGKHFGTILNYL 87

Query: 73  RDGQVSLPENPKDVAELLAEAKYYCITELTDLCEQTIKRKQRETEPICRVPLITSLKEEQ 132
           RD  ++LP+N +++ EL+AEAKYY I  L ++C+  ++ K+   +P+C +P+ITSLKEE+
Sbjct: 88  RDDTITLPQNRQEIKELMAEAKYYLIQGLVNMCQSALQDKKDSYQPVCNIPIITSLKEEE 147

Query: 133 LLLNATAKPVVKLLINRHNNKYSYTSTSDDNLLKNIELFDKLALRFSGRLLFIKDVIGSS 192
            L+ ++ KPVVKLL NR NNKYSYTS SDD+LLKNIELFDKL+LRF+GR+LFIKDVIG  
Sbjct: 148 RLIESSTKPVVKLLYNRSNNKYSYTSNSDDHLLKNIELFDKLSLRFNGRVLFIKDVIG-D 206

Query: 193 EICCWSFFGHGKKIAEVCCTSIVYATDKKHTK 224
           EICCWSF+G G+K+AEVCCTSIVYAT+KK TK
Sbjct: 207 EICCWSFYGQGRKLAEVCCTSIVYATEKKQTK 238
Substrate-specific adapter of a BCR (BTB-CUL3-RBX1) E3 ubiquitin-protein ligase complex involved in regulation of cytoskeleton structure. The BCR(BACURD2) E3 ubiquitin ligase complex mediates the ubiquitination of RHOA, leading to its degradation by the proteasome, thereby regulating the actin cytoskeleton and cell migration. Its interaction with RHOB may regulate apoptosis. May enhance the PCNA-dependent DNA polymerase delta activity.
Homo sapiens (taxid: 9606)
>sp|Q5RBH4|BACD2_PONAB BTB/POZ domain-containing adapter for CUL3-mediated RhoA degradation protein 2 OS=Pongo abelii GN=TNFAIP1 PE=2 SV=1 Back     alignment and function description
>sp|Q7TNY1|BACD2_RAT BTB/POZ domain-containing adapter for CUL3-mediated RhoA degradation protein 2 OS=Rattus norvegicus GN=Tnfaip1 PE=1 SV=1 Back     alignment and function description
>sp|Q9H3F6|BACD3_HUMAN BTB/POZ domain-containing adapter for CUL3-mediated RhoA degradation protein 3 OS=Homo sapiens GN=KCTD10 PE=1 SV=1 Back     alignment and function description
>sp|Q7TPL3|BACD3_RAT BTB/POZ domain-containing adapter for CUL3-mediated RhoA degradation protein 3 OS=Rattus norvegicus GN=Kctd10 PE=1 SV=1 Back     alignment and function description
>sp|Q5F3E8|BACD2_CHICK BTB/POZ domain-containing adapter for CUL3-mediated RhoA degradation protein 2 OS=Gallus gallus GN=TNFAIP1 PE=2 SV=1 Back     alignment and function description
>sp|Q922M3|BACD3_MOUSE BTB/POZ domain-containing adapter for CUL3-mediated RhoA degradation protein 3 OS=Mus musculus GN=Kctd10 PE=1 SV=1 Back     alignment and function description
>sp|O70479|BACD2_MOUSE BTB/POZ domain-containing adapter for CUL3-mediated RhoA degradation protein 2 OS=Mus musculus GN=Tnfaip1 PE=1 SV=1 Back     alignment and function description
>sp|Q8BGV7|BACD1_MOUSE BTB/POZ domain-containing adapter for CUL3-mediated RhoA degradation protein 1 OS=Mus musculus GN=Kctd13 PE=2 SV=1 Back     alignment and function description
>sp|Q28DC9|BACD2_XENTR BTB/POZ domain-containing adapter for CUL3-mediated RhoA degradation protein 2 OS=Xenopus tropicalis GN=tnfaip1 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query531
242003976292 BTB/POZ domain-containing protein KCTD10 0.523 0.952 0.704 1e-116
383852232292 PREDICTED: BTB/POZ domain-containing ada 0.512 0.931 0.707 1e-114
158295484293 AGAP006173-PA [Anopheles gambiae str. PE 0.523 0.948 0.686 1e-114
307211560292 BTB/POZ domain-containing protein KCTD10 0.512 0.931 0.700 1e-112
91090202292 PREDICTED: similar to AGAP006173-PA [Tri 0.525 0.955 0.650 1e-112
322800468288 hypothetical protein SINV_12151 [Solenop 0.506 0.934 0.697 1e-111
332021444288 BTB/POZ domain-containing protein KCTD10 0.506 0.934 0.697 1e-111
350405697292 PREDICTED: BTB/POZ domain-containing ada 0.512 0.931 0.686 1e-111
357612298292 hypothetical protein KGM_05344 [Danaus p 0.536 0.976 0.678 1e-111
307189001288 BTB/POZ domain-containing protein KCTD10 0.506 0.934 0.694 1e-110
>gi|242003976|ref|XP_002422930.1| BTB/POZ domain-containing protein KCTD10, putative [Pediculus humanus corporis] gi|212505823|gb|EEB10192.1| BTB/POZ domain-containing protein KCTD10, putative [Pediculus humanus corporis] Back     alignment and taxonomy information
 Score =  424 bits (1091), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 212/301 (70%), Positives = 242/301 (80%), Gaps = 23/301 (7%)

Query: 6   IVSGNPCQYVKLNVGGSLHYTTIGTLTKHDTMLRAMFSGRMEILTDSEGWVLIDRCGKHF 65
           ++ GNP QYVKLN+GGSLHYTTIGTLTKHDTMLRAMFSGRME+LTDSEGW+LIDRCGKHF
Sbjct: 8   VIKGNPSQYVKLNIGGSLHYTTIGTLTKHDTMLRAMFSGRMEVLTDSEGWILIDRCGKHF 67

Query: 66  GIILNFLRDGQVSLPENPKDVAELLAEAKYYCITELTDLCEQTIKRKQRETEPICRVPLI 125
           G ILNFLRDG   L E  + +AELLAEAKYYC+TEL + CE+ + +K RE EPICRVPLI
Sbjct: 68  GTILNFLRDGSTPLSEETRAIAELLAEAKYYCVTELVEFCERVLAQKSREAEPICRVPLI 127

Query: 126 TSLKEEQLLLNATAKPVVKLLINRHNNKYSYTSTSDDNLLKNIELFDKLALRFSGRLLFI 185
           TS KEEQLL++ ++KPVVKL INRHNNKYSYT+TSDDNLLKNIELFD+L+LRFSGR+LFI
Sbjct: 128 TSKKEEQLLISNSSKPVVKLHINRHNNKYSYTTTSDDNLLKNIELFDRLSLRFSGRVLFI 187

Query: 186 KDVIGSSEICCWSFFGHGKKIAEVCCTSIVYATDKKHTKQSVWLKFLKINQSIFFFNHGV 245
           KDVIGS+EICCW+F+GHGKK+AEVCCTSIVY TDKKHTK  V     +I           
Sbjct: 188 KDVIGSNEICCWTFYGHGKKVAEVCCTSIVYTTDKKHTK--VDFPEARI----------- 234

Query: 246 SRPGYFGARPVVIRPFVTGMRPYTFPAELMQATSTRGAV-AGMSSYTSDEEEERSGLARL 304
               Y  +  +++    TG        ELMQATSTRGAV AGMS+YTSDEEEERSGLARL
Sbjct: 235 ----YEESLNILLYENRTGP-----DLELMQATSTRGAVSAGMSAYTSDEEEERSGLARL 285

Query: 305 R 305
           R
Sbjct: 286 R 286

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|383852232|ref|XP_003701632.1| PREDICTED: BTB/POZ domain-containing adapter for CUL3-mediated RhoA degradation protein 3-like [Megachile rotundata] Back     alignment and taxonomy information
>gi|158295484|ref|XP_316233.3| AGAP006173-PA [Anopheles gambiae str. PEST] gi|157016060|gb|EAA11352.3| AGAP006173-PA [Anopheles gambiae str. PEST] Back     alignment and taxonomy information
>gi|307211560|gb|EFN87638.1| BTB/POZ domain-containing protein KCTD10 [Harpegnathos saltator] Back     alignment and taxonomy information
>gi|91090202|ref|XP_967447.1| PREDICTED: similar to AGAP006173-PA [Tribolium castaneum] gi|270013767|gb|EFA10215.1| hypothetical protein TcasGA2_TC012411 [Tribolium castaneum] Back     alignment and taxonomy information
>gi|322800468|gb|EFZ21472.1| hypothetical protein SINV_12151 [Solenopsis invicta] Back     alignment and taxonomy information
>gi|332021444|gb|EGI61812.1| BTB/POZ domain-containing protein KCTD10 [Acromyrmex echinatior] Back     alignment and taxonomy information
>gi|350405697|ref|XP_003487521.1| PREDICTED: BTB/POZ domain-containing adapter for CUL3-mediated RhoA degradation protein 3-like [Bombus impatiens] Back     alignment and taxonomy information
>gi|357612298|gb|EHJ67905.1| hypothetical protein KGM_05344 [Danaus plexippus] Back     alignment and taxonomy information
>gi|307189001|gb|EFN73518.1| BTB/POZ domain-containing protein KCTD10 [Camponotus floridanus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query531
FB|FBgn0033017301 CG10465 [Drosophila melanogast 0.410 0.724 0.754 2.3e-97
UNIPROTKB|F1NW24314 KCTD10 "Uncharacterized protei 0.397 0.671 0.707 2.2e-84
UNIPROTKB|F1RGB8316 KCTD10 "Uncharacterized protei 0.397 0.667 0.707 2.8e-84
UNIPROTKB|F1PXR3310 KCTD10 "Uncharacterized protei 0.395 0.677 0.712 4.5e-84
UNIPROTKB|Q9H3F6313 KCTD10 "BTB/POZ domain-contain 0.395 0.670 0.712 4.5e-84
UNIPROTKB|A6QLV6315 KCTD10 "KCTD10 protein" [Bos t 0.395 0.666 0.712 7.3e-84
RGD|1591979315 Kctd10 "potassium channel tetr 0.395 0.666 0.712 9.3e-84
ZFIN|ZDB-GENE-040426-2843313 kctd10 "potassium channel tetr 0.412 0.699 0.696 1.2e-83
MGI|MGI:2141207315 Kctd10 "potassium channel tetr 0.395 0.666 0.712 1.2e-83
UNIPROTKB|Q13829316 TNFAIP1 "BTB/POZ domain-contai 0.401 0.674 0.680 2.5e-81
FB|FBgn0033017 CG10465 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 884 (316.2 bits), Expect = 2.3e-97, Sum P(2) = 2.3e-97
 Identities = 166/220 (75%), Positives = 191/220 (86%)

Query:     6 IVSGNPCQYVKLNVGGSLHYTTIGTLTKH-DTMLRAMFSGRMEILTDSEGWVLIDRCGKH 64
             ++ G+  QY+KLNVGG L+YTTIGTLTK+ DTML AMFSGRME+LTDSEGW+LIDRCG H
Sbjct:    12 LLKGHSSQYLKLNVGGHLYYTTIGTLTKNNDTMLSAMFSGRMEVLTDSEGWILIDRCGNH 71

Query:    65 FGIILNFLRDGQVSLPENPKDVAELLAEAKYYCITELTDLCEQTIKRKQRETEPICRVPL 124
             FGIILN+LRDG V LPE  K++AELLAEAKYYCITEL   CE+ +   Q E +PICR+PL
Sbjct:    72 FGIILNYLRDGTVPLPETNKEIAELLAEAKYYCITELAISCERALYAHQ-EPKPICRIPL 130

Query:   125 ITSLKEEQLLLNATAKPVVKLLINRHNNKYSYTSTSDDNLLKNIELFDKLALRFSGRLLF 184
             ITS KEEQLLL+ + KP V L++ R NNKYSYTSTSDDNLLKNIELFDKL+LRF+ R+LF
Sbjct:   131 ITSQKEEQLLLSVSLKPAVILVVQRQNNKYSYTSTSDDNLLKNIELFDKLSLRFNERILF 190

Query:   185 IKDVIGSSEICCWSFFGHGKKIAEVCCTSIVYATDKKHTK 224
             IKDVIG SEICCWSF+GHGKK+AEVCCTSIVYATD+KHTK
Sbjct:   191 IKDVIGPSEICCWSFYGHGKKVAEVCCTSIVYATDRKHTK 230
GO:0051260 "protein homooligomerization" evidence=IEA
UNIPROTKB|F1NW24 KCTD10 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F1RGB8 KCTD10 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|F1PXR3 KCTD10 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|Q9H3F6 KCTD10 "BTB/POZ domain-containing adapter for CUL3-mediated RhoA degradation protein 3" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|A6QLV6 KCTD10 "KCTD10 protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
RGD|1591979 Kctd10 "potassium channel tetramerization domain containing 10" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-040426-2843 kctd10 "potassium channel tetramerisation domain containing 10" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
MGI|MGI:2141207 Kctd10 "potassium channel tetramerisation domain containing 10" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|Q13829 TNFAIP1 "BTB/POZ domain-containing adapter for CUL3-mediated RhoA degradation protein 2" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q13829BACD2_HUMANNo assigned EC number0.68390.39730.6677yesN/A
Q922M3BACD3_MOUSENo assigned EC number0.68160.41610.7015yesN/A
Q7TNY1BACD2_RATNo assigned EC number0.68860.39730.6677yesN/A
Q5RBH4BACD2_PONABNo assigned EC number0.68390.39730.6677yesN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query531
pfam0221492 pfam02214, K_tetra, K+ channel tetramerisation dom 6e-20
smart0022597 smart00225, BTB, Broad-Complex, Tramtrack and Bric 2e-18
pfam0221492 pfam02214, K_tetra, K+ channel tetramerisation dom 1e-07
smart0022597 smart00225, BTB, Broad-Complex, Tramtrack and Bric 9e-07
>gnl|CDD|202161 pfam02214, K_tetra, K+ channel tetramerisation domain Back     alignment and domain information 
 Score = 84.1 bits (209), Expect = 6e-20
 Identities = 34/94 (36%), Positives = 45/94 (47%), Gaps = 5/94 (5%)

Query: 15  VKLNVGGSLHYTTIGTLTK-HDTMLRAMFSGRMEILTDSEGWVLIDRCGKHFGIILNFLR 73
           V+LNVGG    T+  TLT+  DT+L  +   R +   D       DR  KHF  ILNF R
Sbjct: 1   VRLNVGGKRFETSKSTLTRFPDTLLGRLLK-RCDFYDDDTNEYFFDRSPKHFETILNFYR 59

Query: 74  DGQVSLPENP-KDVAELLAEAKYYCITELT-DLC 105
            G   L       +   L E ++Y + EL  +LC
Sbjct: 60  TG-GKLHRPEEVCLDSFLEELEFYGLGELAIELC 92

The N-terminal, cytoplasmic tetramerisation domain (T1) of voltage-gated K+ channels encodes molecular determinants for subfamily-specific assembly of alpha-subunits into functional tetrameric channels. It is distantly related to the BTB/POZ domain pfam00651. Length = 92
>gnl|CDD|197585 smart00225, BTB, Broad-Complex, Tramtrack and Bric a brac Back     alignment and domain information
>gnl|CDD|202161 pfam02214, K_tetra, K+ channel tetramerisation domain Back     alignment and domain information
>gnl|CDD|197585 smart00225, BTB, Broad-Complex, Tramtrack and Bric a brac Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 531
KOG2716|consensus230 100.0
KOG2715|consensus210 99.97
KOG2716|consensus230 99.97
PF0221494 BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassi 99.88
KOG1665|consensus302 99.85
KOG2714|consensus465 99.81
KOG2723|consensus221 99.78
KOG1665|consensus302 99.72
KOG2715|consensus210 99.58
KOG3713|consensus477 99.53
KOG4390|consensus632 99.46
PF0221494 BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassi 99.45
KOG2714|consensus 465 99.37
KOG2723|consensus221 99.31
smart0022590 BTB Broad-Complex, Tramtrack and Bric a brac. Doma 98.87
KOG1545|consensus507 98.52
smart0022590 BTB Broad-Complex, Tramtrack and Bric a brac. Doma 97.8
KOG4390|consensus 632 97.58
PHA03098534 kelch-like protein; Provisional 97.53
PF00651111 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB ( 97.45
KOG3840|consensus438 97.34
KOG3713|consensus 477 97.31
PHA02790480 Kelch-like protein; Provisional 96.8
PHA02713557 hypothetical protein; Provisional 96.57
KOG4441|consensus571 95.05
PHA03098 534 kelch-like protein; Provisional 94.66
PHA02790 480 Kelch-like protein; Provisional 94.35
PF00651111 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB ( 89.52
PHA02713 557 hypothetical protein; Provisional 88.52
KOG4441|consensus 571 85.0
>KOG2716|consensus Back     alignment and domain information 
Probab=100.00  E-value=1.6e-42  Score=340.35  Aligned_cols=216  Identities=35%  Similarity=0.446  Sum_probs=204.0

Q ss_pred             CCCceEEEEECCeEEEeeHhhhccCCCchhhhhcCCcccccCCCCcEEEcCCCCChhhhhhccccceeecCCCchhHHHH
Q psy1964          10 NPCQYVKLNVGGSLHYTTIGTLTKHDTMLRAMFSGRMEILTDSEGWVLIDRCGKHFGIILNFLRDGQVSLPENPKDVAEL   89 (531)
Q Consensus        10 ~~~~~VkLNVGG~lF~TT~sTLtk~dS~L~~mfs~r~~~~~D~~G~~FIDRDP~~F~~ILNYLR~Gkl~LP~~~~el~eL   89 (531)
                      ..++.|+|||||+.|.|+++|||++|+||+.|+++++++..|++|+|||||+|+||+.||||||+|.++||++..++.+|
T Consensus         2 ~~~~~vkLnvGG~~F~Tsk~TLtk~dg~fk~m~e~~i~~~~d~s~~IFIDRSpKHF~~ILNfmRdGdv~LPe~~kel~El   81 (230)
T KOG2716|consen    2 SMSETVKLNVGGTIFKTSKSTLTKFDGFFKTMLETDIPVEKDESGCIFIDRSPKHFDTILNFMRDGDVDLPESEKELKEL   81 (230)
T ss_pred             CccceEEEecCCeEEEeehhhhhhhhhHHHHHhhcCCccccCCcCcEEecCChhHHHHHHHhhhcccccCccchHHHHHH
Confidence            35689999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCcHHHHHHHHHHHHHhccCCCCccccccccCHHHHHHHhhccCCCEEEEEEeeeCCeeEeecCChhhHhhhhh
Q psy1964          90 LAEAKYYCITELTDLCEQTIKRKQRETEPICRVPLITSLKEEQLLLNATAKPVVKLLINRHNNKYSYTSTSDDNLLKNIE  169 (531)
Q Consensus        90 leEAeFY~L~~Lv~~ce~~l~~~e~~~~p~~~v~vlts~~ee~~lI~~s~kpvvkll~~~~~~~ysy~s~s~~nllknie  169 (531)
                      ++||+||.|++|+++|+.++........     +++++..+.+++++.+.||++.+.++++++.+.|.+.+.+....+.+
T Consensus        82 ~~EA~fYlL~~Lv~~C~~~i~~~~~~~~-----~~~~~~~e~~~ii~~~~Kp~l~i~y~~~~~~~~~~p~~f~~~~~~e~  156 (230)
T KOG2716|consen   82 LREAEFYLLDGLVELCQSAIARLIRGYI-----TPIESSEELLQIIANSSKPVLVINYNRANNELSYPPNGFDFQEFNEE  156 (230)
T ss_pred             HHHHHHhhHHHHHHHHHHHhhhcccCcc-----ccccchHHHHHHhhccCCCeEEEEecCCCCceeeCCCCCcHHHHHHH
Confidence            9999999999999999999987754322     36778889999999999999999999999999999999998889999


Q ss_pred             hhhhhhheeCCeeEEEEeccCCCceeEeEEecCceeeeeeeeeeeeeecccceeeeccch-hhHHhhcceeeeec
Q psy1964         170 LFDKLALRFSGRLLFIKDVIGSSEICCWSFFGHGKKIAEVCCTSIVYATDKKHTKQSVWL-KFLKINQSIFFFNH  243 (531)
Q Consensus       170 ~Fdkl~~~f~~ri~f~kdv~g~~eic~Wsfy~~~~k~~e~cc~~i~y~~~~k~~kv~fpe-ri~ee~~~~~~~~~  243 (531)
                      .+|++...|             +++|||+++++++|..+.||.+.+++...++++..+++ +.|.++++.|+++.
T Consensus       157 ~~d~l~i~f-------------~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  218 (230)
T KOG2716|consen  157 YSDKLDNYF-------------KESESESFELTIKKFPERCKDSEVPSWAKSFVKSFISEIRIYITSLFKLLKEI  218 (230)
T ss_pred             HHHHHHhHh-------------hhhhhhhhhccccccCCccccCCCchhhhhhhhhhhhHHHHHHHHHHHHHHHH
Confidence            999999988             59999999999999999999999999999999999999 99999999999987

>KOG2715|consensus Back     alignment and domain information
>KOG2716|consensus Back     alignment and domain information
>PF02214 BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassium channels are the most diverse group of the ion channel family [, ] Back     alignment and domain information
>KOG1665|consensus Back     alignment and domain information
>KOG2714|consensus Back     alignment and domain information
>KOG2723|consensus Back     alignment and domain information
>KOG1665|consensus Back     alignment and domain information
>KOG2715|consensus Back     alignment and domain information
>KOG3713|consensus Back     alignment and domain information
>KOG4390|consensus Back     alignment and domain information
>PF02214 BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassium channels are the most diverse group of the ion channel family [, ] Back     alignment and domain information
>KOG2714|consensus Back     alignment and domain information
>KOG2723|consensus Back     alignment and domain information
>smart00225 BTB Broad-Complex, Tramtrack and Bric a brac Back     alignment and domain information
>KOG1545|consensus Back     alignment and domain information
>smart00225 BTB Broad-Complex, Tramtrack and Bric a brac Back     alignment and domain information
>KOG4390|consensus Back     alignment and domain information
>PHA03098 kelch-like protein; Provisional Back     alignment and domain information
>PF00651 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (for BR-C, ttk and bab) [] or POZ (for Pox virus and Zinc finger) [] domain is present near the N terminus of a fraction of zinc finger (IPR007087 from INTERPRO) proteins and in proteins that contain the IPR006652 from INTERPRO motif such as Kelch and a family of pox virus proteins Back     alignment and domain information
>KOG3840|consensus Back     alignment and domain information
>KOG3713|consensus Back     alignment and domain information
>PHA02790 Kelch-like protein; Provisional Back     alignment and domain information
>PHA02713 hypothetical protein; Provisional Back     alignment and domain information
>KOG4441|consensus Back     alignment and domain information
>PHA03098 kelch-like protein; Provisional Back     alignment and domain information
>PHA02790 Kelch-like protein; Provisional Back     alignment and domain information
>PF00651 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (for BR-C, ttk and bab) [] or POZ (for Pox virus and Zinc finger) [] domain is present near the N terminus of a fraction of zinc finger (IPR007087 from INTERPRO) proteins and in proteins that contain the IPR006652 from INTERPRO motif such as Kelch and a family of pox virus proteins Back     alignment and domain information
>PHA02713 hypothetical protein; Provisional Back     alignment and domain information
>KOG4441|consensus Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query531
3drx_A202 X-Ray Crystal Structure Of Human Kctd5 Protein Crys 5e-09
3drz_A107 X-Ray Crystal Structure Of The N-Terminal Btb Domai 5e-08
>pdb|3DRX|A Chain A, X-Ray Crystal Structure Of Human Kctd5 Protein Crystallized In High- Salt Buffer Length = 202 Back     alignment and structure 
Iteration: 1

 Score = 59.3 bits (142), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 44/132 (33%), Positives = 74/132 (56%), Gaps = 10/132 (7%)
Query: 9   GNPCQYVKLNVGGSLHYTTIGTLTKH-DTMLRAMFSGRMEILTDSE--GWVLIDRCGKHF 65
           G+  ++V+LNVGG+   TT  TL +   + L  +     ++ +D +  G  LIDR   +F
Sbjct: 8   GSVSKWVRLNVGGTYFLTTRQTLCRDPKSFLYRLCQADPDLDSDKDETGAYLIDRDPTYF 67
Query: 66  GIILNFLRDGQVSLPENPKDVAE--LLAEAKYYCITELTDLCEQTIKRKQRETE--PICR 121
           G +LN+LR G++ +    KD+AE  +L EA++Y IT L  L +  I+ +  +T   P+  
Sbjct: 68  GPVLNYLRHGKLVI---NKDLAEEGVLEEAEFYNITSLIKLVKDKIRERDSKTSQVPVKH 124
Query: 122 VPLITSLKEEQL 133
           V  +   +EE+L
Sbjct: 125 VYRVLQCQEEEL 136
>pdb|3DRZ|A Chain A, X-Ray Crystal Structure Of The N-Terminal Btb Domain Of Human Kctd5 Protein Length = 107 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query531
3drx_A202 BTB/POZ domain-containing protein KCTD5; golgi, gr 6e-46
3drx_A202 BTB/POZ domain-containing protein KCTD5; golgi, gr 1e-12
3drz_A107 BTB/POZ domain-containing protein KCTD5; potassium 1e-36
3drz_A107 BTB/POZ domain-containing protein KCTD5; potassium 9e-14
1nn7_A105 Potassium channel KV4.2; teteramerization domain, 3e-20
1nn7_A105 Potassium channel KV4.2; teteramerization domain, 1e-07
1s1g_A124 Potassium voltage-gated channel subfamily D membe; 5e-20
1s1g_A124 Potassium voltage-gated channel subfamily D membe; 5e-07
3kvt_A115 Potassium channel protein SHAW; tetramerization do 5e-20
3kvt_A115 Potassium channel protein SHAW; tetramerization do 6e-07
2nz0_B140 Potassium voltage-gated channel subfamily D membe; 6e-20
2nz0_B140 Potassium voltage-gated channel subfamily D membe; 3e-07
1t1d_A100 Protein (potassium channel KV1.1); potassium chann 2e-14
1t1d_A100 Protein (potassium channel KV1.1); potassium chann 2e-05
>3drx_A BTB/POZ domain-containing protein KCTD5; golgi, grAsp55, potassium channel domain T1, pentameric assembly, HOST-virus interaction, nucleus; 3.11A {Homo sapiens} PDB: 3dry_A Length = 202 Back     alignment and structure
 Score =  158 bits (402), Expect = 6e-46
 Identities = 43/164 (26%), Positives = 81/164 (49%), Gaps = 8/164 (4%)

Query: 9   GNPCQYVKLNVGGSLHYTTIGTLTKH-DTMLRAMFSGRMEILT--DSEGWVLIDRCGKHF 65
           G+  ++V+LNVGG+   TT  TL +   + L  +     ++ +  D  G  LIDR   +F
Sbjct: 8   GSVSKWVRLNVGGTYFLTTRQTLCRDPKSFLYRLCQADPDLDSDKDETGAYLIDRDPTYF 67

Query: 66  GIILNFLRDGQVSLPENPKDVAELLAEAKYYCITELTDLCEQTIKRKQRETE--PICRVP 123
           G +LN+LR G++ + ++      +L EA++Y IT L  L +  I+ +  +T   P+  V 
Sbjct: 68  GPVLNYLRHGKLVINKD-LAEEGVLEEAEFYNITSLIKLVKDKIRERDSKTSQVPVKHVY 126

Query: 124 LITSLKEEQL--LLNATAKPVVKLLINRHNNKYSYTSTSDDNLL 165
            +   +EE+L  +++  +       +    + Y+Y +      L
Sbjct: 127 RVLQCQEEELTQMVSTMSDGWKFEQLVSIGSSYNYGNEDQAEFL 170
>3drx_A BTB/POZ domain-containing protein KCTD5; golgi, grAsp55, potassium channel domain T1, pentameric assembly, HOST-virus interaction, nucleus; 3.11A {Homo sapiens} PDB: 3dry_A Length = 202 Back     alignment and structure
>3drz_A BTB/POZ domain-containing protein KCTD5; potassium channel domain T1, pentamer, unkno function; 1.90A {Homo sapiens} Length = 107 Back     alignment and structure
>3drz_A BTB/POZ domain-containing protein KCTD5; potassium channel domain T1, pentamer, unkno function; 1.90A {Homo sapiens} Length = 107 Back     alignment and structure
>1nn7_A Potassium channel KV4.2; teteramerization domain, voltage gated potassium channel SHAL, membrane protein; 2.10A {Rattus norvegicus} SCOP: d.42.1.2 Length = 105 Back     alignment and structure
>1nn7_A Potassium channel KV4.2; teteramerization domain, voltage gated potassium channel SHAL, membrane protein; 2.10A {Rattus norvegicus} SCOP: d.42.1.2 Length = 105 Back     alignment and structure
>1s1g_A Potassium voltage-gated channel subfamily D membe; K+ channels, tetramerization domain, T1 domain, transport PR; 2.60A {Homo sapiens} SCOP: d.42.1.2 Length = 124 Back     alignment and structure
>1s1g_A Potassium voltage-gated channel subfamily D membe; K+ channels, tetramerization domain, T1 domain, transport PR; 2.60A {Homo sapiens} SCOP: d.42.1.2 Length = 124 Back     alignment and structure
>3kvt_A Potassium channel protein SHAW; tetramerization domain, molecular recogni zinc-binding; 2.00A {Aplysia californica} SCOP: d.42.1.2 Length = 115 Back     alignment and structure
>3kvt_A Potassium channel protein SHAW; tetramerization domain, molecular recogni zinc-binding; 2.00A {Aplysia californica} SCOP: d.42.1.2 Length = 115 Back     alignment and structure
>2nz0_B Potassium voltage-gated channel subfamily D membe; KV4.3, kchip1, membrane protein; 3.20A {Homo sapiens} PDB: 2i2r_A Length = 140 Back     alignment and structure
>2nz0_B Potassium voltage-gated channel subfamily D membe; KV4.3, kchip1, membrane protein; 3.20A {Homo sapiens} PDB: 2i2r_A Length = 140 Back     alignment and structure
>1t1d_A Protein (potassium channel KV1.1); potassium channels, tetramerization domain, aplysia KV1.1, proton transport, membrane protein; 1.51A {Aplysia californica} SCOP: d.42.1.2 PDB: 1eod_A 1eof_A 1eoe_A 1a68_A 1qdv_A 1exb_E* 1qdw_A 1dsx_A Length = 100 Back     alignment and structure
>1t1d_A Protein (potassium channel KV1.1); potassium channels, tetramerization domain, aplysia KV1.1, proton transport, membrane protein; 1.51A {Aplysia californica} SCOP: d.42.1.2 PDB: 1eod_A 1eof_A 1eoe_A 1a68_A 1qdv_A 1exb_E* 1qdw_A 1dsx_A Length = 100 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query531
3drx_A202 BTB/POZ domain-containing protein KCTD5; golgi, gr 100.0
3drz_A107 BTB/POZ domain-containing protein KCTD5; potassium 99.95
3kvt_A115 Potassium channel protein SHAW; tetramerization do 99.92
1s1g_A124 Potassium voltage-gated channel subfamily D membe; 99.91
1t1d_A100 Protein (potassium channel KV1.1); potassium chann 99.91
1nn7_A105 Potassium channel KV4.2; teteramerization domain, 99.9
2nz0_B140 Potassium voltage-gated channel subfamily D membe; 99.9
3drx_A202 BTB/POZ domain-containing protein KCTD5; golgi, gr 99.8
2r9r_B514 Paddle chimera voltage gated potassium channel KV; 99.74
3drz_A107 BTB/POZ domain-containing protein KCTD5; potassium 99.7
1t1d_A100 Protein (potassium channel KV1.1); potassium chann 99.54
3kvt_A115 Potassium channel protein SHAW; tetramerization do 99.52
1s1g_A124 Potassium voltage-gated channel subfamily D membe; 99.47
2nz0_B140 Potassium voltage-gated channel subfamily D membe; 99.47
1nn7_A105 Potassium channel KV4.2; teteramerization domain, 99.45
2r9r_B 514 Paddle chimera voltage gated potassium channel KV; 99.05
1r29_A127 B-cell lymphoma 6 protein; BTB domain, transcripti 98.45
2vpk_A116 Myoneurin; transcription regulation, transcription 98.36
2vkp_A109 BTB/POZ domain-containing protein 6; protein-bindi 98.26
2ppi_A144 Gigaxonin; BTB domain, protein degradation, struct 98.17
2yy9_A135 Zinc finger and BTB domain-containing protein 48; 98.12
2if5_A120 Zinc finger and BTB domain-containing protein 7A; 98.11
3b84_A119 Zinc finger and BTB domain-containing protein 48; 98.09
1buo_A121 POZ domain, protein (promyelocytic leukemia zinc f 98.03
3ga1_A129 Nucleus accumbens-associated protein 1; BTB/POZ do 98.03
3htm_A172 Speckle-type POZ protein; BTB, SPOP, ubiquitin, li 97.99
2q81_A119 MIZ-1 protein; BTB/POZ domain, transcription; HET: 97.98
2z8h_A138 Transcription regulator protein BACH1; BTB, POZ, d 97.97
3hve_A256 Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, dis 97.96
2ihc_A124 Transcription regulator protein BACH1; BRIC-A-BRAC 97.86
4eoz_A145 Speckle-type POZ protein; E3 ubiquitin ligase, nuc 97.83
3ohu_A125 Transcription regulator protein BACH2; BTB/POZ dom 97.8
3i3n_A279 Kelch-like protein 11; structural genomics, BTB, K 97.64
3m5b_A119 Zinc finger and BTB domain-containing protein 32; 97.56
3hqi_A312 Speckle-type POZ protein; SPOP, ubiquitin, puckere 97.52
3fkc_A116 Transcriptional regulator kaiso; zinc finger and B 97.28
2vpk_A116 Myoneurin; transcription regulation, transcription 97.27
2vkp_A109 BTB/POZ domain-containing protein 6; protein-bindi 97.1
1r29_A127 B-cell lymphoma 6 protein; BTB domain, transcripti 97.08
3b84_A119 Zinc finger and BTB domain-containing protein 48; 96.96
2yy9_A135 Zinc finger and BTB domain-containing protein 48; 96.93
2if5_A120 Zinc finger and BTB domain-containing protein 7A; 96.78
1buo_A121 POZ domain, protein (promyelocytic leukemia zinc f 96.74
2ppi_A144 Gigaxonin; BTB domain, protein degradation, struct 96.55
4eoz_A145 Speckle-type POZ protein; E3 ubiquitin ligase, nuc 96.41
3htm_A172 Speckle-type POZ protein; BTB, SPOP, ubiquitin, li 96.4
2z8h_A138 Transcription regulator protein BACH1; BTB, POZ, d 96.38
2q81_A119 MIZ-1 protein; BTB/POZ domain, transcription; HET: 96.11
3ga1_A129 Nucleus accumbens-associated protein 1; BTB/POZ do 95.9
2ihc_A124 Transcription regulator protein BACH1; BRIC-A-BRAC 95.57
3i3n_A279 Kelch-like protein 11; structural genomics, BTB, K 95.46
3ohu_A125 Transcription regulator protein BACH2; BTB/POZ dom 95.32
3hve_A256 Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, dis 95.07
3hqi_A312 Speckle-type POZ protein; SPOP, ubiquitin, puckere 94.81
2ast_A159 S-phase kinase-associated protein 1A; SCF-substrat 93.61
3m5b_A119 Zinc finger and BTB domain-containing protein 32; 93.06
3fkc_A116 Transcriptional regulator kaiso; zinc finger and B 91.97
1fs1_B141 SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, le 86.81
2p1m_A160 SKP1-like protein 1A; F-BOX, leucine rich repeat, 81.66
>3drx_A BTB/POZ domain-containing protein KCTD5; golgi, grAsp55, potassium channel domain T1, pentameric assembly, HOST-virus interaction, nucleus; 3.11A {Homo sapiens} PDB: 3dry_A Back     alignment and structure
Probab=100.00  E-value=4.3e-36  Score=289.28  Aligned_cols=160  Identities=27%  Similarity=0.460  Sum_probs=130.6

Q ss_pred             cccccCCCCceEEEEECCeEEEeeHhhhccC-CCchhhhhcCCccc--ccCCCCcEEEcCCCCChhhhhhccccceeecC
Q psy1964           4 NFIVSGNPCQYVKLNVGGSLHYTTIGTLTKH-DTMLRAMFSGRMEI--LTDSEGWVLIDRCGKHFGIILNFLRDGQVSLP   80 (531)
Q Consensus         4 ~~~i~~~~~~~VkLNVGG~lF~TT~sTLtk~-dS~L~~mfs~r~~~--~~D~~G~~FIDRDP~~F~~ILNYLR~Gkl~LP   80 (531)
                      .+..+++.+++|+|||||++|.|+++||+++ +|||++||+++..+  ..|++|+|||||||.+|++||||||+|++++|
T Consensus         3 ~~~~~g~~~~~V~LNVGG~~F~Tt~sTL~r~PdS~L~~lfs~~~~~~~~~De~geyFIDRDP~~F~~ILnyLRtG~L~lP   82 (202)
T 3drx_A            3 LAQRPGSVSKWVRLNVGGTYFLTTRQTLCRDPKSFLYRLCQADPDLDSDKDETGAYLIDRDPTYFGPVLNYLRHGKLVIN   82 (202)
T ss_dssp             TTSCSSCCCCEEEEEETTEEEEEETTGGGSCTTSSTHHHHSCCCC----BCTTCCEEECSCSTTHHHHHHHHHHSCCCCC
T ss_pred             cccCCCCCCCEEEEEECCEEEEEeHHHHhCCCcchHHHHhcCccccCcccCCCccEEecCChHHHHHHHHHhcCCccCCC
Confidence            4667889999999999999999999999999 89999999986543  35789999999999999999999999999999


Q ss_pred             CCchhHHHHHHHHHhcCcHHHHHHHHHHHHHhccCC--CCcccc-ccccCHHHHHH-Hh-hccCCCEEEEEEeeeCCeeE
Q psy1964          81 ENPKDVAELLAEAKYYCITELTDLCEQTIKRKQRET--EPICRV-PLITSLKEEQL-LL-NATAKPVVKLLINRHNNKYS  155 (531)
Q Consensus        81 ~~~~el~eLleEAeFY~L~~Lv~~ce~~l~~~e~~~--~p~~~v-~vlts~~ee~~-lI-~~s~kpvvkll~~~~~~~ys  155 (531)
                      ++.+. ..|++||+||+|++|+++|+++|.+++...  .|.++| +|++|++++++ |+ +|++.|.+++++|+ |++|+
T Consensus        83 ~~~~~-~~l~eEA~FygL~~Lv~~l~~~i~ere~~~~~~~~k~v~~v~qc~~~el~~~~s~~~d~~~~~~~~~~-~~~~~  160 (202)
T 3drx_A           83 KDLAE-EGVLEEAEFYNITSLIKLVKDKIRERDSKTSQVPVKHVYRVLQCQEEELTQMVSTMSDGWKFEQLVSI-GSSYN  160 (202)
T ss_dssp             TTSCH-HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCCSCCCEEEEEEECSTHHHHHHHTCCTTCEEEEEEEC------
T ss_pred             CCCCH-HHHHHHHHHCCcHHHHHHHHHHHHHHhcccccCCCcceeeeeeCCHHHHHHHHHhhccccChhheEec-ccccc
Confidence            99876 679999999999999999999998877642  345555 99999999884 55 78999999999999 99999


Q ss_pred             eecCChhhHh
Q psy1964         156 YTSTSDDNLL  165 (531)
Q Consensus       156 y~s~s~~nll  165 (531)
                      |+++++++||
T Consensus       161 ~~~~~~~e~l  170 (202)
T 3drx_A          161 YGNEDQAEFL  170 (202)
T ss_dssp             -------CEE
T ss_pred             CCCcCcceEE
Confidence            9999999998
>3drz_A BTB/POZ domain-containing protein KCTD5; potassium channel domain T1, pentamer, unkno function; 1.90A {Homo sapiens} Back     alignment and structure
>3kvt_A Potassium channel protein SHAW; tetramerization domain, molecular recogni zinc-binding; 2.00A {Aplysia californica} SCOP: d.42.1.2 Back     alignment and structure
>1s1g_A Potassium voltage-gated channel subfamily D membe; K+ channels, tetramerization domain, T1 domain, transport PR; 2.60A {Homo sapiens} SCOP: d.42.1.2 Back     alignment and structure
>1t1d_A Protein (potassium channel KV1.1); potassium channels, tetramerization domain, aplysia KV1.1, proton transport, membrane protein; 1.51A {Aplysia californica} SCOP: d.42.1.2 PDB: 1eod_A 1eof_A 1eoe_A 1a68_A 1qdv_A 1exb_E* 1qdw_A 1dsx_A Back     alignment and structure
>1nn7_A Potassium channel KV4.2; teteramerization domain, voltage gated potassium channel SHAL, membrane protein; 2.10A {Rattus norvegicus} SCOP: d.42.1.2 Back     alignment and structure
>2nz0_B Potassium voltage-gated channel subfamily D membe; KV4.3, kchip1, membrane protein; 3.20A {Homo sapiens} PDB: 2i2r_A Back     alignment and structure
>3drx_A BTB/POZ domain-containing protein KCTD5; golgi, grAsp55, potassium channel domain T1, pentameric assembly, HOST-virus interaction, nucleus; 3.11A {Homo sapiens} PDB: 3dry_A Back     alignment and structure
>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B* Back     alignment and structure
>3drz_A BTB/POZ domain-containing protein KCTD5; potassium channel domain T1, pentamer, unkno function; 1.90A {Homo sapiens} Back     alignment and structure
>1t1d_A Protein (potassium channel KV1.1); potassium channels, tetramerization domain, aplysia KV1.1, proton transport, membrane protein; 1.51A {Aplysia californica} SCOP: d.42.1.2 PDB: 1eod_A 1eof_A 1eoe_A 1a68_A 1qdv_A 1exb_E* 1qdw_A 1dsx_A Back     alignment and structure
>3kvt_A Potassium channel protein SHAW; tetramerization domain, molecular recogni zinc-binding; 2.00A {Aplysia californica} SCOP: d.42.1.2 Back     alignment and structure
>1s1g_A Potassium voltage-gated channel subfamily D membe; K+ channels, tetramerization domain, T1 domain, transport PR; 2.60A {Homo sapiens} SCOP: d.42.1.2 Back     alignment and structure
>2nz0_B Potassium voltage-gated channel subfamily D membe; KV4.3, kchip1, membrane protein; 3.20A {Homo sapiens} PDB: 2i2r_A Back     alignment and structure
>1nn7_A Potassium channel KV4.2; teteramerization domain, voltage gated potassium channel SHAL, membrane protein; 2.10A {Rattus norvegicus} SCOP: d.42.1.2 Back     alignment and structure
>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B* Back     alignment and structure
>1r29_A B-cell lymphoma 6 protein; BTB domain, transcriptional repression, transcription; 1.30A {Homo sapiens} SCOP: d.42.1.1 PDB: 1r28_A 1r2b_A 3bim_A 3lbz_A* 3e4u_A Back     alignment and structure
>2vpk_A Myoneurin; transcription regulation, transcription, metal-binding, alternative splicing, zinc, nucleus, BTB domain, zinc-finger, DNA-binding; 2.00A {Homo sapiens} Back     alignment and structure
>2vkp_A BTB/POZ domain-containing protein 6; protein-binding; 1.9A {Homo sapiens} Back     alignment and structure
>2ppi_A Gigaxonin; BTB domain, protein degradation, structural genomics, struct genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} Back     alignment and structure
>2yy9_A Zinc finger and BTB domain-containing protein 48; mouse, HKR3, structural genomics, NPPSFA; 2.60A {Mus musculus} Back     alignment and structure
>2if5_A Zinc finger and BTB domain-containing protein 7A; POZ domain, POK, proto oncogene, transcription F transcription; 2.00A {Homo sapiens} PDB: 2nn2_A Back     alignment and structure
>3b84_A Zinc finger and BTB domain-containing protein 48; krueppel related zinc finger protein 3, HKR3, ZBTB48, Z finger, oncogene; 1.74A {Homo sapiens} Back     alignment and structure
>1buo_A POZ domain, protein (promyelocytic leukemia zinc finger prote; protein-protein interaction domain, transcriptional represso finger protein; 1.90A {Homo sapiens} SCOP: d.42.1.1 PDB: 1cs3_A Back     alignment and structure
>3ga1_A Nucleus accumbens-associated protein 1; BTB/POZ domain, phosphoprotein, repressor, transcri transcription regulation; 2.10A {Homo sapiens} Back     alignment and structure
>3htm_A Speckle-type POZ protein; BTB, SPOP, ubiquitin, ligase, nucleus, UBL conjugation pathway, protein binding; 2.50A {Homo sapiens} Back     alignment and structure
>2q81_A MIZ-1 protein; BTB/POZ domain, transcription; HET: PG4; 2.10A {Homo sapiens} PDB: 3m52_A Back     alignment and structure
>2z8h_A Transcription regulator protein BACH1; BTB, POZ, disulfide bond, activator, DNA-binding, nucleus, phosphorylation, repressor; 2.50A {Mus musculus} Back     alignment and structure
>3hve_A Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, disease mutation, kelch repeat, neurodegeneration, phosphoprotein, polymorphism, UBL conjugation; 2.80A {Homo sapiens} PDB: 3hve_B Back     alignment and structure
>2ihc_A Transcription regulator protein BACH1; BRIC-A-BRAC domain,transcription factor, protein-PROT interaction; 2.44A {Homo sapiens} Back     alignment and structure
>4eoz_A Speckle-type POZ protein; E3 ubiquitin ligase, nucleus, protein binding; 2.40A {Homo sapiens} Back     alignment and structure
>3ohu_A Transcription regulator protein BACH2; BTB/POZ domain; 2.10A {Homo sapiens} SCOP: d.42.1.0 PDB: 3ohv_A Back     alignment and structure
>3i3n_A Kelch-like protein 11; structural genomics, BTB, KLHL11A, SGC, structural genomics consortium, kelch repeat, secreted, protein binding; 2.60A {Homo sapiens} PDB: 4ap2_A* 4apf_A Back     alignment and structure
>3m5b_A Zinc finger and BTB domain-containing protein 32; POZ domain, BTB/POZ domain, ZBTB32, zinc finger domain-containing protein 32; 2.00A {Homo sapiens} SCOP: d.42.1.0 Back     alignment and structure
>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A Back     alignment and structure
>3fkc_A Transcriptional regulator kaiso; zinc finger and BTB domain containing 33, kaiso transcriptio ZNF-kaiso, ZNF348,wugsc:H_DJ525N14.1; 1.70A {Homo sapiens} PDB: 3m4t_A 3m8v_A Back     alignment and structure
>2vpk_A Myoneurin; transcription regulation, transcription, metal-binding, alternative splicing, zinc, nucleus, BTB domain, zinc-finger, DNA-binding; 2.00A {Homo sapiens} Back     alignment and structure
>2vkp_A BTB/POZ domain-containing protein 6; protein-binding; 1.9A {Homo sapiens} Back     alignment and structure
>1r29_A B-cell lymphoma 6 protein; BTB domain, transcriptional repression, transcription; 1.30A {Homo sapiens} SCOP: d.42.1.1 PDB: 1r28_A 1r2b_A 3bim_A 3lbz_A* 3e4u_A Back     alignment and structure
>3b84_A Zinc finger and BTB domain-containing protein 48; krueppel related zinc finger protein 3, HKR3, ZBTB48, Z finger, oncogene; 1.74A {Homo sapiens} Back     alignment and structure
>2yy9_A Zinc finger and BTB domain-containing protein 48; mouse, HKR3, structural genomics, NPPSFA; 2.60A {Mus musculus} Back     alignment and structure
>2if5_A Zinc finger and BTB domain-containing protein 7A; POZ domain, POK, proto oncogene, transcription F transcription; 2.00A {Homo sapiens} PDB: 2nn2_A Back     alignment and structure
>1buo_A POZ domain, protein (promyelocytic leukemia zinc finger prote; protein-protein interaction domain, transcriptional represso finger protein; 1.90A {Homo sapiens} SCOP: d.42.1.1 PDB: 1cs3_A Back     alignment and structure
>2ppi_A Gigaxonin; BTB domain, protein degradation, structural genomics, struct genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} Back     alignment and structure
>4eoz_A Speckle-type POZ protein; E3 ubiquitin ligase, nucleus, protein binding; 2.40A {Homo sapiens} Back     alignment and structure
>3htm_A Speckle-type POZ protein; BTB, SPOP, ubiquitin, ligase, nucleus, UBL conjugation pathway, protein binding; 2.50A {Homo sapiens} Back     alignment and structure
>2z8h_A Transcription regulator protein BACH1; BTB, POZ, disulfide bond, activator, DNA-binding, nucleus, phosphorylation, repressor; 2.50A {Mus musculus} Back     alignment and structure
>2q81_A MIZ-1 protein; BTB/POZ domain, transcription; HET: PG4; 2.10A {Homo sapiens} PDB: 3m52_A Back     alignment and structure
>3ga1_A Nucleus accumbens-associated protein 1; BTB/POZ domain, phosphoprotein, repressor, transcri transcription regulation; 2.10A {Homo sapiens} Back     alignment and structure
>2ihc_A Transcription regulator protein BACH1; BRIC-A-BRAC domain,transcription factor, protein-PROT interaction; 2.44A {Homo sapiens} Back     alignment and structure
>3i3n_A Kelch-like protein 11; structural genomics, BTB, KLHL11A, SGC, structural genomics consortium, kelch repeat, secreted, protein binding; 2.60A {Homo sapiens} PDB: 4ap2_A* 4apf_A Back     alignment and structure
>3ohu_A Transcription regulator protein BACH2; BTB/POZ domain; 2.10A {Homo sapiens} SCOP: d.42.1.0 PDB: 3ohv_A Back     alignment and structure
>3hve_A Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, disease mutation, kelch repeat, neurodegeneration, phosphoprotein, polymorphism, UBL conjugation; 2.80A {Homo sapiens} PDB: 3hve_B Back     alignment and structure
>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A Back     alignment and structure
>3m5b_A Zinc finger and BTB domain-containing protein 32; POZ domain, BTB/POZ domain, ZBTB32, zinc finger domain-containing protein 32; 2.00A {Homo sapiens} SCOP: d.42.1.0 Back     alignment and structure
>3fkc_A Transcriptional regulator kaiso; zinc finger and BTB domain containing 33, kaiso transcriptio ZNF-kaiso, ZNF348,wugsc:H_DJ525N14.1; 1.70A {Homo sapiens} PDB: 3m4t_A 3m8v_A Back     alignment and structure
>1fs1_B SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.157.1.1 d.42.1.1 PDB: 1fs2_B 1ldk_D Back     alignment and structure
>2p1m_A SKP1-like protein 1A; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_A* 2p1o_A* 2p1p_A* 2p1q_A* 3c6n_A* 3c6o_A* 3c6p_A* 3ogk_A* 3ogl_A* 3ogm_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 531
d1t1da_100 d.42.1.2 (A:) Shaker potassium channel {California 4e-22
d1t1da_100 d.42.1.2 (A:) Shaker potassium channel {California 7e-11
d1nn7a_105 d.42.1.2 (A:) Potassium channel kv4.2 {Rat (Rattus 6e-22
d1nn7a_105 d.42.1.2 (A:) Potassium channel kv4.2 {Rat (Rattus 1e-08
d3kvta_103 d.42.1.2 (A:) akv3.1 voltage-gated potassium chann 2e-18
d3kvta_103 d.42.1.2 (A:) akv3.1 voltage-gated potassium chann 1e-07
d1buoa_121 d.42.1.1 (A:) Promyelocytic leukaemia zinc finger 0.001
>d1t1da_ d.42.1.2 (A:) Shaker potassium channel {California sea hare (Aplysia californica) [TaxId: 6500]} Length = 100 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: Tetramerization domain of potassium channels
domain: Shaker potassium channel
species: California sea hare (Aplysia californica) [TaxId: 6500]

 Score = 88.7 bits (220), Expect = 4e-22
 Identities = 22/88 (25%), Positives = 30/88 (34%), Gaps = 2/88 (2%)

Query: 15  VKLNVGGSLHYTTIGTLTKH-DTMLRAMFSGRMEILTDSEGWVLIDRCGKHFGIILNFLR 73
           V +NV G    T + TL +  DT+L      R             DR    F  IL F +
Sbjct: 3   VVINVSGLRFETQLKTLNQFPDTLLGNPQK-RNRYYDPLRNEYFFDRNRPSFDAILYFYQ 61

Query: 74  DGQVSLPENPKDVAELLAEAKYYCITEL 101
            G          +     E K+Y + E 
Sbjct: 62  SGGRLRRPVNVPLDVFSEEIKFYELGEN 89
>d1t1da_ d.42.1.2 (A:) Shaker potassium channel {California sea hare (Aplysia californica) [TaxId: 6500]} Length = 100 Back     information, alignment and structure
>d1nn7a_ d.42.1.2 (A:) Potassium channel kv4.2 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 105 Back     information, alignment and structure
>d1nn7a_ d.42.1.2 (A:) Potassium channel kv4.2 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 105 Back     information, alignment and structure
>d3kvta_ d.42.1.2 (A:) akv3.1 voltage-gated potassium channel {California sea hare (Aplysia californica) [TaxId: 6500]} Length = 103 Back     information, alignment and structure
>d3kvta_ d.42.1.2 (A:) akv3.1 voltage-gated potassium channel {California sea hare (Aplysia californica) [TaxId: 6500]} Length = 103 Back     information, alignment and structure
>d1buoa_ d.42.1.1 (A:) Promyelocytic leukaemia zinc finger (PLZF) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]} Length = 121 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query531
d1nn7a_105 Potassium channel kv4.2 {Rat (Rattus norvegicus) [ 99.9
d3kvta_103 akv3.1 voltage-gated potassium channel {California 99.89
d1t1da_100 Shaker potassium channel {California sea hare (Apl 99.89
d1nn7a_105 Potassium channel kv4.2 {Rat (Rattus norvegicus) [ 99.47
d3kvta_103 akv3.1 voltage-gated potassium channel {California 99.46
d1t1da_100 Shaker potassium channel {California sea hare (Apl 99.46
d1r29a_122 B-cell lymphoma 6 (Bcl6) protein BTB domain {Human 98.12
d1buoa_121 Promyelocytic leukaemia zinc finger (PLZF) protein 97.87
d1r29a_122 B-cell lymphoma 6 (Bcl6) protein BTB domain {Human 96.54
d1buoa_121 Promyelocytic leukaemia zinc finger (PLZF) protein 95.95
>d1nn7a_ d.42.1.2 (A:) Potassium channel kv4.2 {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: Tetramerization domain of potassium channels
domain: Potassium channel kv4.2
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.90  E-value=1e-24  Score=188.17  Aligned_cols=97  Identities=25%  Similarity=0.343  Sum_probs=84.8

Q ss_pred             eEEEEECCeEEEeeHhhhccC-CCchhhhhcCCcccccCCCCcEEEcCCCCChhhhhhccccceeecCCCchhHHHHHHH
Q psy1964          14 YVKLNVGGSLHYTTIGTLTKH-DTMLRAMFSGRMEILTDSEGWVLIDRCGKHFGIILNFLRDGQVSLPENPKDVAELLAE   92 (531)
Q Consensus        14 ~VkLNVGG~lF~TT~sTLtk~-dS~L~~mfs~r~~~~~D~~G~~FIDRDP~~F~~ILNYLR~Gkl~LP~~~~el~eLleE   92 (531)
                      +|+|||||++|.|+++||+++ +|+|++++...  ..++++|+|||||||.+|++||||||+|++++|++.+ +..|++|
T Consensus         1 iI~LNVGG~~f~t~~~TL~~~p~s~l~~~~~~~--~~~~~~~~~FiDRdp~~F~~IL~ylR~G~l~~p~~~~-~~~l~~E   77 (105)
T d1nn7a_           1 LIVLNVSGTRFQTWQDTLERYPDTLLGSSERDF--FYHPETQQYFFDRDPDIFRHILNFYRTGKLHYPRHEC-ISAYDEE   77 (105)
T ss_dssp             CEEEEETTEEEEECHHHHHTSCSSSTTSGGGGG--GEEGGGTEEEECSCTTTHHHHHHHHHHSCBCCCTTSC-HHHHHHH
T ss_pred             CEEEEECCEEEEEeHHHHhcCCCCCcccccccc--CcCCCCCcEEEeCCHHHHHHHHHHHhcCccccCCCcc-HHHHHHH
Confidence            589999999999999999999 89999987643  4568889999999999999999999999999999865 6889999


Q ss_pred             HHhcCcHHHH--HHHHHHHHHhc
Q psy1964          93 AKYYCITELT--DLCEQTIKRKQ  113 (531)
Q Consensus        93 AeFY~L~~Lv--~~ce~~l~~~e  113 (531)
                      |+||+|++++  .+|.+.+.+++
T Consensus        78 a~fygi~~~~l~~cc~~~~~~~~  100 (105)
T d1nn7a_          78 LAFFGLIPEIIGDCCYEEYKDRR  100 (105)
T ss_dssp             HHHHTCCSCCBCHHHHHHHHHHH
T ss_pred             HHHcCCCHHHHHHHHHHHHHHHH
Confidence            9999998754  67877775443
>d3kvta_ d.42.1.2 (A:) akv3.1 voltage-gated potassium channel {California sea hare (Aplysia californica) [TaxId: 6500]} Back     information, alignment and structure
>d1t1da_ d.42.1.2 (A:) Shaker potassium channel {California sea hare (Aplysia californica) [TaxId: 6500]} Back     information, alignment and structure
>d1nn7a_ d.42.1.2 (A:) Potassium channel kv4.2 {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d3kvta_ d.42.1.2 (A:) akv3.1 voltage-gated potassium channel {California sea hare (Aplysia californica) [TaxId: 6500]} Back     information, alignment and structure
>d1t1da_ d.42.1.2 (A:) Shaker potassium channel {California sea hare (Aplysia californica) [TaxId: 6500]} Back     information, alignment and structure
>d1r29a_ d.42.1.1 (A:) B-cell lymphoma 6 (Bcl6) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1buoa_ d.42.1.1 (A:) Promyelocytic leukaemia zinc finger (PLZF) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1r29a_ d.42.1.1 (A:) B-cell lymphoma 6 (Bcl6) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1buoa_ d.42.1.1 (A:) Promyelocytic leukaemia zinc finger (PLZF) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure